Query 017241
Match_columns 375
No_of_seqs 265 out of 1906
Neff 7.8
Searched_HMMs 29240
Date Mon Mar 25 11:15:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017241.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017241hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ng2_A RNF4, snurf, ring finge 99.4 9.6E-14 3.3E-18 103.0 2.5 56 316-371 8-70 (71)
2 2djb_A Polycomb group ring fin 99.3 1.8E-12 6.3E-17 96.5 6.8 57 315-371 12-69 (72)
3 2xeu_A Ring finger protein 4; 99.3 3.4E-13 1.2E-17 97.7 2.7 55 317-371 2-63 (64)
4 1t1h_A Gspef-atpub14, armadill 99.3 1.6E-12 5.3E-17 98.4 5.9 58 315-372 5-63 (78)
5 2ecy_A TNF receptor-associated 99.3 3.3E-12 1.1E-16 93.5 5.6 52 316-367 13-65 (66)
6 2ecw_A Tripartite motif-contai 99.3 8.9E-12 3E-16 95.3 8.2 58 316-373 17-80 (85)
7 2d8t_A Dactylidin, ring finger 99.3 9.4E-13 3.2E-17 97.8 2.4 53 316-368 13-65 (71)
8 2yur_A Retinoblastoma-binding 99.3 4.4E-12 1.5E-16 95.0 6.0 51 315-365 12-65 (74)
9 2kre_A Ubiquitin conjugation f 99.3 5.1E-12 1.7E-16 100.4 6.3 58 314-371 25-82 (100)
10 2ecv_A Tripartite motif-contai 99.3 8E-12 2.7E-16 95.6 7.3 58 316-373 17-80 (85)
11 2kr4_A Ubiquitin conjugation f 99.3 4.3E-12 1.5E-16 97.8 5.2 57 315-371 11-67 (85)
12 2csy_A Zinc finger protein 183 99.2 7.6E-12 2.6E-16 95.3 6.2 48 316-363 13-60 (81)
13 2ysl_A Tripartite motif-contai 99.2 7.3E-12 2.5E-16 93.3 5.9 53 315-367 17-72 (73)
14 1wgm_A Ubiquitin conjugation f 99.2 1E-11 3.5E-16 98.3 6.8 57 315-371 19-76 (98)
15 3lrq_A E3 ubiquitin-protein li 99.2 1.3E-12 4.5E-17 103.9 1.6 57 316-372 20-78 (100)
16 2ect_A Ring finger protein 126 99.2 1E-11 3.5E-16 93.8 5.9 56 316-371 13-71 (78)
17 2egp_A Tripartite motif-contai 99.2 3.1E-12 1.1E-16 96.8 2.9 57 316-372 10-73 (79)
18 1g25_A CDK-activating kinase a 99.2 6.7E-12 2.3E-16 91.5 4.2 58 317-374 2-65 (65)
19 3ztg_A E3 ubiquitin-protein li 99.2 1.3E-11 4.6E-16 96.2 5.8 56 315-370 10-69 (92)
20 2ea6_A Ring finger protein 4; 99.2 7.3E-12 2.5E-16 92.0 3.7 49 316-364 13-68 (69)
21 2ct2_A Tripartite motif protei 99.2 1.6E-11 5.3E-16 94.8 5.6 57 315-371 12-75 (88)
22 1chc_A Equine herpes virus-1 r 99.2 3.2E-11 1.1E-15 88.5 5.3 47 317-363 4-51 (68)
23 2y1n_A E3 ubiquitin-protein li 99.1 3.8E-13 1.3E-17 130.5 -6.9 150 209-370 226-385 (389)
24 2kiz_A E3 ubiquitin-protein li 99.1 4E-11 1.4E-15 88.3 5.6 49 316-364 12-63 (69)
25 4ayc_A E3 ubiquitin-protein li 99.1 1.4E-11 4.8E-16 103.6 3.3 47 318-364 53-99 (138)
26 2ecn_A Ring finger protein 141 99.1 1.7E-11 6E-16 90.5 3.0 54 316-370 13-66 (70)
27 1iym_A EL5; ring-H2 finger, ub 99.1 4.9E-11 1.7E-15 83.7 4.9 47 317-363 4-54 (55)
28 2ecm_A Ring finger and CHY zin 99.1 4.2E-11 1.4E-15 84.0 4.6 47 317-363 4-54 (55)
29 1x4j_A Ring finger protein 38; 99.1 2.6E-11 8.8E-16 90.9 3.7 50 316-365 21-73 (75)
30 2y43_A E3 ubiquitin-protein li 99.1 2.5E-11 8.7E-16 96.0 3.8 54 317-370 21-75 (99)
31 2ysj_A Tripartite motif-contai 99.1 7.4E-11 2.5E-15 85.2 5.8 44 315-358 17-63 (63)
32 1jm7_A BRCA1, breast cancer ty 99.1 5.6E-11 1.9E-15 96.0 5.5 56 317-372 20-78 (112)
33 2ep4_A Ring finger protein 24; 99.1 7.2E-11 2.5E-15 88.1 5.1 49 316-364 13-64 (74)
34 3fl2_A E3 ubiquitin-protein li 99.1 4.6E-11 1.6E-15 98.5 4.3 53 317-369 51-105 (124)
35 2ckl_A Polycomb group ring fin 99.1 5.2E-11 1.8E-15 95.8 4.3 50 316-365 13-63 (108)
36 2l0b_A E3 ubiquitin-protein li 99.1 5E-11 1.7E-15 92.9 4.0 49 316-364 38-89 (91)
37 4ap4_A E3 ubiquitin ligase RNF 99.1 4.4E-11 1.5E-15 99.2 3.3 57 316-372 5-68 (133)
38 2ecj_A Tripartite motif-contai 99.1 1.4E-10 4.9E-15 82.1 5.2 43 316-358 13-58 (58)
39 2c2l_A CHIP, carboxy terminus 99.1 8.3E-11 2.8E-15 109.8 5.2 57 315-371 205-262 (281)
40 3hct_A TNF receptor-associated 99.1 5.8E-11 2E-15 97.1 3.3 56 315-370 15-71 (118)
41 2yu4_A E3 SUMO-protein ligase 99.0 1.1E-10 3.7E-15 91.6 3.9 56 316-371 5-70 (94)
42 1z6u_A NP95-like ring finger p 99.0 1.3E-10 4.3E-15 99.2 4.2 49 317-365 77-126 (150)
43 2f42_A STIP1 homology and U-bo 99.0 1.4E-10 4.9E-15 101.2 4.0 56 316-371 104-160 (179)
44 4ap4_A E3 ubiquitin ligase RNF 99.0 6.3E-11 2.2E-15 98.2 1.5 56 316-371 70-132 (133)
45 2vje_A E3 ubiquitin-protein li 99.0 1.4E-10 4.6E-15 84.4 3.1 54 317-372 7-63 (64)
46 1rmd_A RAG1; V(D)J recombinati 99.0 1.8E-10 6.2E-15 93.7 3.5 53 317-369 22-75 (116)
47 1v87_A Deltex protein 2; ring- 99.0 3.4E-10 1.2E-14 91.7 4.5 47 318-364 25-94 (114)
48 2ecl_A Ring-box protein 2; RNF 99.0 2.7E-10 9.3E-15 86.8 3.5 51 317-367 14-79 (81)
49 1jm7_B BARD1, BRCA1-associated 99.0 1.3E-10 4.5E-15 94.8 1.9 53 316-370 20-73 (117)
50 2vje_B MDM4 protein; proto-onc 99.0 1.9E-10 6.6E-15 83.3 2.4 54 317-372 6-62 (63)
51 3l11_A E3 ubiquitin-protein li 99.0 8.8E-11 3E-15 95.5 0.6 49 316-364 13-62 (115)
52 2ckl_B Ubiquitin ligase protei 98.9 3.5E-10 1.2E-14 97.9 4.1 49 316-364 52-102 (165)
53 2bay_A PRE-mRNA splicing facto 98.9 3.4E-10 1.2E-14 81.4 3.2 55 318-372 3-58 (61)
54 1bor_A Transcription factor PM 98.9 2.8E-10 9.6E-15 80.4 2.7 46 316-364 4-49 (56)
55 1e4u_A Transcriptional repress 98.9 1.1E-09 3.7E-14 82.8 5.6 53 316-368 9-66 (78)
56 4ic3_A E3 ubiquitin-protein li 98.9 4.1E-10 1.4E-14 84.3 1.5 49 317-371 23-72 (74)
57 3knv_A TNF receptor-associated 98.9 4.7E-10 1.6E-14 94.6 1.6 49 315-363 28-77 (141)
58 2ea5_A Cell growth regulator w 98.8 4.8E-09 1.6E-13 77.1 6.5 51 316-372 13-64 (68)
59 3hcs_A TNF receptor-associated 98.8 1.5E-09 5.3E-14 94.2 3.2 56 315-370 15-71 (170)
60 3dpl_R Ring-box protein 1; ubi 98.8 2.4E-09 8.4E-14 85.7 4.1 47 317-363 36-100 (106)
61 2ecg_A Baculoviral IAP repeat- 98.8 3.8E-09 1.3E-13 79.1 3.6 49 317-371 24-73 (75)
62 3htk_C E3 SUMO-protein ligase 98.7 4.9E-09 1.7E-13 96.0 2.6 55 316-370 179-238 (267)
63 4a0k_B E3 ubiquitin-protein li 98.6 4.8E-09 1.6E-13 85.3 0.6 49 317-365 47-113 (117)
64 2yho_A E3 ubiquitin-protein li 98.6 7.7E-09 2.6E-13 78.3 0.8 49 317-371 17-66 (79)
65 2d8s_A Cellular modulator of i 98.5 1.2E-07 4.1E-12 71.8 5.0 55 316-370 13-77 (80)
66 3t6p_A Baculoviral IAP repeat- 98.5 3.3E-08 1.1E-12 95.2 2.0 50 316-371 293-343 (345)
67 1wim_A KIAA0161 protein; ring 98.3 6.5E-08 2.2E-12 75.5 0.3 53 317-369 4-71 (94)
68 2ct0_A Non-SMC element 1 homol 98.2 2.6E-06 8.9E-11 63.3 5.4 47 317-363 14-63 (74)
69 3vk6_A E3 ubiquitin-protein li 97.9 5.4E-06 1.9E-10 64.3 3.4 45 320-364 3-49 (101)
70 1vyx_A ORF K3, K3RING; zinc-bi 97.7 2.2E-05 7.6E-10 55.8 3.9 48 316-363 4-58 (60)
71 3k1l_B Fancl; UBC, ring, RWD, 97.7 1.1E-05 3.6E-10 76.5 1.8 49 316-364 306-373 (381)
72 3nw0_A Non-structural maintena 96.3 0.0032 1.1E-07 57.2 4.6 47 318-364 180-229 (238)
73 3m62_A Ubiquitin conjugation f 95.4 0.0092 3.1E-07 63.8 4.2 58 314-371 887-945 (968)
74 2jun_A Midline-1; B-BOX, TRIM, 93.5 0.035 1.2E-06 42.9 2.4 31 317-347 2-35 (101)
75 2cs3_A Protein C14ORF4, MY039 92.5 0.23 8E-06 36.5 5.3 35 316-350 13-51 (93)
76 2ko5_A Ring finger protein Z; 90.1 0.49 1.7E-05 35.9 5.1 49 316-366 26-75 (99)
77 2lri_C Autoimmune regulator; Z 84.9 0.96 3.3E-05 32.2 3.9 46 317-362 11-60 (66)
78 1wd2_A Ariadne-1 protein homol 79.5 0.46 1.6E-05 33.2 0.4 34 318-351 6-47 (60)
79 3i2d_A E3 SUMO-protein ligase 74.3 2 6.9E-05 41.0 3.4 51 317-368 248-304 (371)
80 1y02_A CARP2, FYVE-ring finger 69.0 0.49 1.7E-05 38.0 -1.8 42 317-358 18-63 (120)
81 4fo9_A E3 SUMO-protein ligase 68.9 3.2 0.00011 39.5 3.5 50 318-368 215-270 (360)
82 2d8v_A Zinc finger FYVE domain 68.5 3.3 0.00011 29.2 2.5 33 316-349 6-39 (67)
83 1z60_A TFIIH basal transcripti 66.8 2.7 9.1E-05 29.2 1.8 40 319-358 16-58 (59)
84 1wil_A KIAA1045 protein; ring 66.4 7.3 0.00025 28.9 4.2 33 316-348 13-47 (89)
85 2fiy_A Protein FDHE homolog; F 65.5 0.67 2.3E-05 43.4 -1.9 46 316-361 180-231 (309)
86 1x4u_A Zinc finger, FYVE domai 65.1 3.9 0.00013 30.3 2.6 30 317-346 13-46 (84)
87 1m3v_A FLIN4, fusion of the LI 64.7 3.8 0.00013 32.4 2.7 51 317-367 31-84 (122)
88 1z2q_A LM5-1; membrane protein 64.6 3.6 0.00012 30.5 2.4 31 317-347 20-54 (84)
89 1joc_A EEA1, early endosomal a 63.7 2.9 9.9E-05 33.6 1.8 29 318-346 69-101 (125)
90 2yw8_A RUN and FYVE domain-con 62.4 3.6 0.00012 30.3 2.0 31 317-347 18-52 (82)
91 1wfk_A Zinc finger, FYVE domai 61.3 4.2 0.00014 30.5 2.2 31 317-347 8-42 (88)
92 3zyq_A Hepatocyte growth facto 60.5 4.4 0.00015 35.9 2.6 30 318-347 164-197 (226)
93 3mpx_A FYVE, rhogef and PH dom 60.2 1.8 6.3E-05 42.0 0.0 46 317-362 374-430 (434)
94 1dvp_A HRS, hepatocyte growth 59.7 3.3 0.00011 36.5 1.6 30 318-347 161-194 (220)
95 1mm2_A MI2-beta; PHD, zinc fin 58.9 4.2 0.00014 28.2 1.7 46 317-362 8-57 (61)
96 4g9i_A Hydrogenase maturation 58.5 3.2 0.00011 43.8 1.5 49 314-362 102-188 (772)
97 3t7l_A Zinc finger FYVE domain 58.1 4 0.00014 30.7 1.6 30 318-347 20-53 (90)
98 1x64_A Alpha-actinin-2 associa 57.5 23 0.00078 25.9 5.8 42 317-366 24-65 (89)
99 3ttc_A HYPF, transcriptional r 57.1 3.1 0.00011 42.9 1.1 49 314-362 13-99 (657)
100 1vfy_A Phosphatidylinositol-3- 56.8 4.8 0.00017 28.9 1.8 28 319-346 12-43 (73)
101 2l5u_A Chromodomain-helicase-D 56.2 4.6 0.00016 27.9 1.5 45 316-360 9-57 (61)
102 1x62_A C-terminal LIM domain p 55.6 17 0.00059 25.9 4.8 38 318-363 15-52 (79)
103 3vth_A Hydrogenase maturation 54.4 4.4 0.00015 42.6 1.7 49 314-362 107-193 (761)
104 2d8x_A Protein pinch; LIM doma 52.3 14 0.00047 25.6 3.6 30 318-347 31-61 (70)
105 3o36_A Transcription intermedi 50.9 5.3 0.00018 34.0 1.4 45 318-362 4-52 (184)
106 3u5n_A E3 ubiquitin-protein li 49.8 3.4 0.00012 36.0 0.0 46 317-362 6-55 (207)
107 1fp0_A KAP-1 corepressor; PHD 48.6 11 0.00037 28.3 2.6 46 316-361 23-72 (88)
108 2cor_A Pinch protein; LIM doma 47.8 24 0.00083 25.2 4.5 38 319-364 16-53 (79)
109 1weo_A Cellulose synthase, cat 47.6 32 0.0011 25.7 5.0 46 318-363 16-69 (93)
110 2dar_A PDZ and LIM domain prot 46.8 21 0.00072 26.2 4.1 42 317-366 24-65 (90)
111 2pv0_B DNA (cytosine-5)-methyl 46.2 19 0.00064 34.6 4.5 45 317-361 92-148 (386)
112 2gmg_A Hypothetical protein PF 44.3 6.4 0.00022 30.5 0.8 29 329-362 66-94 (105)
113 2lbm_A Transcriptional regulat 43.4 20 0.0007 29.3 3.7 45 316-360 61-116 (142)
114 1x4l_A Skeletal muscle LIM-pro 43.1 35 0.0012 23.5 4.6 11 318-328 35-45 (72)
115 2xjy_A Rhombotin-2; oncoprotei 42.6 17 0.00057 28.7 3.1 50 316-365 27-79 (131)
116 1v6g_A Actin binding LIM prote 42.1 19 0.00066 25.7 3.1 40 319-366 16-55 (81)
117 1wig_A KIAA1808 protein; LIM d 42.0 31 0.001 24.2 4.2 32 316-347 29-62 (73)
118 1wyh_A SLIM 2, skeletal muscle 41.6 25 0.00084 24.3 3.6 29 318-346 33-62 (72)
119 1nyp_A Pinch protein; LIM doma 41.5 19 0.00065 24.5 2.9 36 320-363 7-42 (66)
120 2cur_A Skeletal muscle LIM-pro 40.9 28 0.00095 23.9 3.7 31 317-347 30-61 (69)
121 2l43_A N-teminal domain from h 40.5 6.9 0.00024 29.3 0.4 52 316-367 23-81 (88)
122 2yql_A PHD finger protein 21A; 40.2 3.6 0.00012 27.9 -1.1 44 316-359 7-54 (56)
123 3ql9_A Transcriptional regulat 39.9 21 0.00071 28.7 3.2 44 317-360 56-110 (129)
124 2d8z_A Four and A half LIM dom 39.9 37 0.0013 23.2 4.3 31 317-347 30-61 (70)
125 2rgt_A Fusion of LIM/homeobox 39.7 35 0.0012 28.2 4.8 49 316-366 31-79 (169)
126 1x68_A FHL5 protein; four-and- 39.4 26 0.00088 24.7 3.4 36 320-363 7-46 (76)
127 2cuq_A Four and A half LIM dom 38.5 33 0.0011 24.2 3.9 27 319-345 42-69 (80)
128 2cu8_A Cysteine-rich protein 2 37.7 26 0.00088 24.6 3.2 37 319-363 10-47 (76)
129 1x63_A Skeletal muscle LIM-pro 37.7 35 0.0012 24.2 4.0 37 320-364 17-55 (82)
130 2co8_A NEDD9 interacting prote 36.4 50 0.0017 23.6 4.6 42 317-366 14-56 (82)
131 2jmo_A Parkin; IBR, E3 ligase, 36.2 3.5 0.00012 30.3 -1.9 16 335-350 55-70 (80)
132 1x4k_A Skeletal muscle LIM-pro 35.4 32 0.0011 23.7 3.4 29 318-346 33-62 (72)
133 1x61_A Thyroid receptor intera 35.0 53 0.0018 22.5 4.5 33 317-349 32-65 (72)
134 2o35_A Hypothetical protein DU 34.7 15 0.0005 28.1 1.4 11 340-350 43-53 (105)
135 3fyb_A Protein of unknown func 34.7 15 0.0005 28.1 1.4 11 340-350 42-52 (104)
136 1xwh_A Autoimmune regulator; P 34.6 6.7 0.00023 27.5 -0.5 46 316-361 6-55 (66)
137 1rut_X Flinc4, fusion protein 34.1 11 0.00036 32.2 0.6 49 317-365 31-82 (188)
138 1x6a_A LIMK-2, LIM domain kina 33.9 31 0.0011 24.5 3.1 30 318-347 41-73 (81)
139 1x3h_A Leupaxin; paxillin fami 33.4 30 0.001 24.4 3.0 11 318-328 41-51 (80)
140 2jtn_A LIM domain-binding prot 33.0 40 0.0014 28.2 4.2 48 317-366 86-133 (182)
141 1zbd_B Rabphilin-3A; G protein 32.8 13 0.00045 30.1 0.9 30 317-346 54-88 (134)
142 2dj7_A Actin-binding LIM prote 32.4 45 0.0015 23.8 3.8 38 318-363 15-53 (80)
143 3a1b_A DNA (cytosine-5)-methyl 32.1 33 0.0011 28.6 3.3 44 317-360 78-133 (159)
144 2d8y_A Eplin protein; LIM doma 32.0 74 0.0025 23.1 5.1 32 317-348 41-73 (91)
145 1f62_A Transcription factor WS 31.9 24 0.00083 22.9 2.0 41 320-360 2-49 (51)
146 3c5k_A HD6, histone deacetylas 31.6 18 0.00063 28.1 1.6 26 318-343 24-49 (109)
147 2dlo_A Thyroid receptor-intera 31.1 32 0.0011 24.5 2.8 12 318-329 41-52 (81)
148 2xqn_T Testin, TESS; metal-bin 29.7 44 0.0015 25.9 3.6 47 317-365 29-76 (126)
149 2puy_A PHD finger protein 21A; 29.2 9 0.00031 26.2 -0.6 44 318-361 5-52 (60)
150 2egq_A FHL1 protein; LIM domai 29.0 40 0.0014 23.6 3.0 39 319-365 16-59 (77)
151 2jrp_A Putative cytoplasmic pr 28.9 3.5 0.00012 30.5 -2.9 15 353-367 52-66 (81)
152 1g47_A Pinch protein; LIM doma 28.5 53 0.0018 22.8 3.6 39 318-364 11-51 (77)
153 2yt5_A Metal-response element- 28.3 9 0.00031 26.6 -0.7 48 316-363 4-63 (66)
154 2zet_C Melanophilin; complex, 28.1 19 0.00066 29.8 1.2 29 317-345 67-100 (153)
155 1weu_A Inhibitor of growth fam 28.0 1.4E+02 0.0047 22.2 5.9 44 316-363 34-87 (91)
156 2k16_A Transcription initiatio 27.1 16 0.00056 26.0 0.5 48 317-364 17-71 (75)
157 3mjh_B Early endosome antigen 26.9 9.1 0.00031 23.3 -0.8 14 318-331 5-18 (34)
158 2l4z_A DNA endonuclease RBBP8, 26.5 82 0.0028 24.6 4.7 39 317-363 60-99 (123)
159 2a20_A Regulating synaptic mem 26.4 24 0.00083 24.2 1.2 37 316-362 7-43 (62)
160 2ysm_A Myeloid/lymphoid or mix 26.3 23 0.00079 27.3 1.3 33 317-349 6-41 (111)
161 1wen_A Inhibitor of growth fam 26.0 99 0.0034 21.8 4.6 44 316-363 14-67 (71)
162 2ehe_A Four and A half LIM dom 25.9 62 0.0021 22.9 3.6 37 320-364 17-55 (82)
163 1iml_A CRIP, cysteine rich int 25.6 39 0.0013 23.6 2.4 45 316-362 25-71 (76)
164 2iyb_E Testin, TESS, TES; LIM 25.4 34 0.0012 23.2 1.9 11 353-363 33-43 (65)
165 2l3k_A Rhombotin-2, linker, LI 24.7 57 0.002 25.3 3.4 50 316-367 34-85 (123)
166 2lv9_A Histone-lysine N-methyl 23.8 40 0.0014 25.5 2.2 43 317-360 27-75 (98)
167 2lcq_A Putative toxin VAPC6; P 22.7 25 0.00084 29.1 0.9 10 353-362 149-158 (165)
168 2uzg_A Ubiquitin carboxyl-term 22.7 41 0.0014 25.4 2.1 26 318-343 25-53 (97)
169 2csz_A Synaptotagmin-like prot 20.7 1.4E+02 0.0047 21.5 4.4 30 316-345 23-57 (76)
170 1x4w_A Hypothetical protein FL 20.3 54 0.0018 23.1 2.1 27 317-343 14-44 (67)
No 1
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.38 E-value=9.6e-14 Score=103.01 Aligned_cols=56 Identities=32% Similarity=0.835 Sum_probs=51.7
Q ss_pred CCCccccccCCCCCCC-------eeeCCCCccchhhHHHHHhcCCCCCCccCCCCCCCceecc
Q 017241 316 PGVSKCTLCLSNRQDP-------TATPCGHVFCWNCIMEWCNEKPECPLCRAPITHSSLVCLY 371 (375)
Q Consensus 316 ~~~~~C~iC~~~~~~p-------~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~l~ 371 (375)
.++..|+||++.+.+| +.++|||.||..|+..|++.+..||.||+++..+++.++|
T Consensus 8 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~ 70 (71)
T 3ng2_A 8 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRYHPIY 70 (71)
T ss_dssp TTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCCCSCCCCC
T ss_pred CCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcCCCCCCCCCccChhheeecc
Confidence 4578999999998776 7889999999999999999889999999999999999987
No 2
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.33 E-value=1.8e-12 Score=96.52 Aligned_cols=57 Identities=23% Similarity=0.491 Sum_probs=51.0
Q ss_pred CCCCccccccCCCCCCCeee-CCCCccchhhHHHHHhcCCCCCCccCCCCCCCceecc
Q 017241 315 APGVSKCTLCLSNRQDPTAT-PCGHVFCWNCIMEWCNEKPECPLCRAPITHSSLVCLY 371 (375)
Q Consensus 315 ~~~~~~C~iC~~~~~~p~~~-~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~l~ 371 (375)
..+...|+||++.+.+|+.+ +|||.||..||..|++....||.||+.+...++++..
T Consensus 12 ~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~ 69 (72)
T 2djb_A 12 LTPYILCSICKGYLIDATTITECLHTFCKSCIVRHFYYSNRCPKCNIVVHQTQPLSGP 69 (72)
T ss_dssp CCGGGSCTTTSSCCSSCEECSSSCCEECHHHHHHHHHHCSSCTTTCCCCCSSCSCCCC
T ss_pred cCCCCCCCCCChHHHCcCEECCCCCHHHHHHHHHHHHcCCcCCCcCcccCcccccccC
Confidence 34578999999999999987 9999999999999999889999999999988776654
No 3
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.33 E-value=3.4e-13 Score=97.75 Aligned_cols=55 Identities=31% Similarity=0.821 Sum_probs=50.7
Q ss_pred CCccccccCCCCCCC-------eeeCCCCccchhhHHHHHhcCCCCCCccCCCCCCCceecc
Q 017241 317 GVSKCTLCLSNRQDP-------TATPCGHVFCWNCIMEWCNEKPECPLCRAPITHSSLVCLY 371 (375)
Q Consensus 317 ~~~~C~iC~~~~~~p-------~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~l~ 371 (375)
++..|+||++.+.+| +.++|||.||..|+..|++.+..||.||+++..+++.++|
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~ 63 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRYHPIY 63 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHHCSBCTTTCCBCTTTCEEECC
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHcCCCCCCCCccCCccceeeee
Confidence 357899999988766 7889999999999999999899999999999999999997
No 4
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.32 E-value=1.6e-12 Score=98.36 Aligned_cols=58 Identities=22% Similarity=0.517 Sum_probs=52.2
Q ss_pred CCCCccccccCCCCCCCeeeCCCCccchhhHHHHHhc-CCCCCCccCCCCCCCceeccC
Q 017241 315 APGVSKCTLCLSNRQDPTATPCGHVFCWNCIMEWCNE-KPECPLCRAPITHSSLVCLYH 372 (375)
Q Consensus 315 ~~~~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~l~~ 372 (375)
..+...|+||++.+.+|+.++|||+||..||..|+.. ...||.|++++...++.|.+.
T Consensus 5 ~~~~~~C~IC~~~~~~Pv~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~~~l~~n~~ 63 (78)
T 1t1h_A 5 FPEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLTPNYV 63 (78)
T ss_dssp CSSSSSCTTTSCCCSSEEEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSSCCCEECTT
T ss_pred CcccCCCCCccccccCCEEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCChhhCccCHH
Confidence 3567999999999999999999999999999999986 789999999999888887653
No 5
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.28 E-value=3.3e-12 Score=93.45 Aligned_cols=52 Identities=29% Similarity=0.694 Sum_probs=47.1
Q ss_pred CCCccccccCCCCCCCeeeCCCCccchhhHHHHHh-cCCCCCCccCCCCCCCc
Q 017241 316 PGVSKCTLCLSNRQDPTATPCGHVFCWNCIMEWCN-EKPECPLCRAPITHSSL 367 (375)
Q Consensus 316 ~~~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~-~~~~CP~Cr~~~~~~~~ 367 (375)
.+...|+||++.+.+|+.++|||+||..|+..|+. ....||.||+++..+++
T Consensus 13 ~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~i 65 (66)
T 2ecy_A 13 EDKYKCEKCHLVLCSPKQTECGHRFCESCMAALLSSSSPKCTACQESIVKDKV 65 (66)
T ss_dssp CCCEECTTTCCEESSCCCCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCTTTC
T ss_pred CcCCCCCCCChHhcCeeECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCChhhc
Confidence 45789999999999999999999999999999994 56799999999987765
No 6
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.28 E-value=8.9e-12 Score=95.34 Aligned_cols=58 Identities=31% Similarity=0.720 Sum_probs=52.2
Q ss_pred CCCccccccCCCCCCCeeeCCCCccchhhHHHHHhc------CCCCCCccCCCCCCCceeccCC
Q 017241 316 PGVSKCTLCLSNRQDPTATPCGHVFCWNCIMEWCNE------KPECPLCRAPITHSSLVCLYHS 373 (375)
Q Consensus 316 ~~~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~~------~~~CP~Cr~~~~~~~~~~l~~~ 373 (375)
.+...|+||++.+.+|+.++|||.||..|+..|+.. ...||.||..+...++.+.+..
T Consensus 17 ~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~n~~l 80 (85)
T 2ecw_A 17 KEEVTCPICLELLKEPVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFGNLKPNLHV 80 (85)
T ss_dssp CTTTSCTTTCSCCSSCEECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTTCCEECSCC
T ss_pred ccCCCCcCCChhhCcceeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHHhCCcCHHH
Confidence 457899999999999999999999999999999976 6799999999998888887643
No 7
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.28 E-value=9.4e-13 Score=97.84 Aligned_cols=53 Identities=34% Similarity=0.752 Sum_probs=47.8
Q ss_pred CCCccccccCCCCCCCeeeCCCCccchhhHHHHHhcCCCCCCccCCCCCCCce
Q 017241 316 PGVSKCTLCLSNRQDPTATPCGHVFCWNCIMEWCNEKPECPLCRAPITHSSLV 368 (375)
Q Consensus 316 ~~~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~ 368 (375)
.+...|+||++.+.+|+.++|||+||..||..|+.....||+||..+...+++
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~ 65 (71)
T 2d8t_A 13 LTVPECAICLQTCVHPVSLPCKHVFCYLCVKGASWLGKRCALCRQEIPEDFLD 65 (71)
T ss_dssp SSCCBCSSSSSBCSSEEEETTTEEEEHHHHHHCTTCSSBCSSSCCBCCHHHHS
T ss_pred CCCCCCccCCcccCCCEEccCCCHHHHHHHHHHHHCCCcCcCcCchhCHhhcc
Confidence 45689999999999999999999999999999999889999999998865543
No 8
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.27 E-value=4.4e-12 Score=95.03 Aligned_cols=51 Identities=27% Similarity=0.623 Sum_probs=44.9
Q ss_pred CCCCccccccCCCCCCCeeeC-CCCccchhhHHHHHhcC--CCCCCccCCCCCC
Q 017241 315 APGVSKCTLCLSNRQDPTATP-CGHVFCWNCIMEWCNEK--PECPLCRAPITHS 365 (375)
Q Consensus 315 ~~~~~~C~iC~~~~~~p~~~~-CgH~fC~~Ci~~~~~~~--~~CP~Cr~~~~~~ 365 (375)
..+...|+||++.+.+|+.++ |||.||..||..|+... ..||.||+++...
T Consensus 12 ~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~ 65 (74)
T 2yur_A 12 IPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSP 65 (74)
T ss_dssp SCGGGSCSSSCCCCTTCEECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCCT
T ss_pred CCCCCCCcCCChHHhCCeEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCCc
Confidence 356789999999999999999 99999999999999755 6999999986543
No 9
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=99.27 E-value=5.1e-12 Score=100.41 Aligned_cols=58 Identities=24% Similarity=0.280 Sum_probs=53.4
Q ss_pred CCCCCccccccCCCCCCCeeeCCCCccchhhHHHHHhcCCCCCCccCCCCCCCceecc
Q 017241 314 AAPGVSKCTLCLSNRQDPTATPCGHVFCWNCIMEWCNEKPECPLCRAPITHSSLVCLY 371 (375)
Q Consensus 314 ~~~~~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~l~ 371 (375)
...+.+.|+||++.+.+|+.++|||+||..||..|+.....||.|+.++...+++|..
T Consensus 25 ~~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~~L~pn~ 82 (100)
T 2kre_A 25 DAPDEFRDPLMDTLMTDPVRLPSGTIMDRSIILRHLLNSPTDPFNRQTLTESMLEPVP 82 (100)
T ss_dssp SCSTTTBCTTTCSBCSSEEEETTTEEEEHHHHHHHTTSCSBCSSSCCBCCTTSSEECH
T ss_pred cCcHhhCCcCccCcccCCeECCCCCEEchHHHHHHHHcCCCCCCCCCCCChhhceECH
Confidence 3457899999999999999999999999999999999889999999999999988864
No 10
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.27 E-value=8e-12 Score=95.59 Aligned_cols=58 Identities=26% Similarity=0.645 Sum_probs=52.1
Q ss_pred CCCccccccCCCCCCCeeeCCCCccchhhHHHHHhc------CCCCCCccCCCCCCCceeccCC
Q 017241 316 PGVSKCTLCLSNRQDPTATPCGHVFCWNCIMEWCNE------KPECPLCRAPITHSSLVCLYHS 373 (375)
Q Consensus 316 ~~~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~~------~~~CP~Cr~~~~~~~~~~l~~~ 373 (375)
.+...|+||++.+.+|+.++|||.||..|+..|+.. ...||.||..+...++.+.+..
T Consensus 17 ~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~n~~l 80 (85)
T 2ecv_A 17 KEEVTCPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPENIRPNRHV 80 (85)
T ss_dssp CCCCCCTTTCSCCSSCBCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSSSCCCSCCC
T ss_pred cCCCCCCCCCcccCCceeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHHhcCccHHH
Confidence 457899999999999999999999999999999876 6899999999998888877654
No 11
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=99.26 E-value=4.3e-12 Score=97.81 Aligned_cols=57 Identities=26% Similarity=0.274 Sum_probs=52.5
Q ss_pred CCCCccccccCCCCCCCeeeCCCCccchhhHHHHHhcCCCCCCccCCCCCCCceecc
Q 017241 315 APGVSKCTLCLSNRQDPTATPCGHVFCWNCIMEWCNEKPECPLCRAPITHSSLVCLY 371 (375)
Q Consensus 315 ~~~~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~l~ 371 (375)
..+.+.|+||++.+.+|+.++|||+||..||..|+.....||.|++++...+++|..
T Consensus 11 ~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~~l~pn~ 67 (85)
T 2kr4_A 11 APDEFRDPLMDTLMTDPVRLPSGTVMDRSIILRHLLNSPTDPFNRQMLTESMLEPVP 67 (85)
T ss_dssp CCTTTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCGGGCEECH
T ss_pred CchheECcccCchhcCCeECCCCCEECHHHHHHHHhcCCCCCCCcCCCChHhcchHH
Confidence 356899999999999999999999999999999999889999999999988888764
No 12
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.25 E-value=7.6e-12 Score=95.32 Aligned_cols=48 Identities=31% Similarity=0.751 Sum_probs=45.0
Q ss_pred CCCccccccCCCCCCCeeeCCCCccchhhHHHHHhcCCCCCCccCCCC
Q 017241 316 PGVSKCTLCLSNRQDPTATPCGHVFCWNCIMEWCNEKPECPLCRAPIT 363 (375)
Q Consensus 316 ~~~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 363 (375)
.....|+||++.+.+|+.++|||+||..|+..|+.....||.||.++.
T Consensus 13 ~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 60 (81)
T 2csy_A 13 EIPFRCFICRQAFQNPVVTKCRHYFCESCALEHFRATPRCYICDQPTG 60 (81)
T ss_dssp CCCSBCSSSCSBCCSEEECTTSCEEEHHHHHHHHHHCSBCSSSCCBCC
T ss_pred CCCCCCcCCCchhcCeeEccCCCHhHHHHHHHHHHCCCcCCCcCcccc
Confidence 457899999999999999999999999999999998899999999986
No 13
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.25 E-value=7.3e-12 Score=93.29 Aligned_cols=53 Identities=30% Similarity=0.770 Sum_probs=47.1
Q ss_pred CCCCccccccCCCCCCCeeeCCCCccchhhHHHHHh---cCCCCCCccCCCCCCCc
Q 017241 315 APGVSKCTLCLSNRQDPTATPCGHVFCWNCIMEWCN---EKPECPLCRAPITHSSL 367 (375)
Q Consensus 315 ~~~~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~---~~~~CP~Cr~~~~~~~~ 367 (375)
..+...|+||++.+.+|+.++|||.||..|+..|++ ....||.||+++..+++
T Consensus 17 ~~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~ 72 (73)
T 2ysl_A 17 LQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRKNAI 72 (73)
T ss_dssp CCCCCBCTTTCSBCSSEEECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCCCC
T ss_pred CccCCEeccCCcccCCeEEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCcccC
Confidence 345789999999999999999999999999999996 45699999999987765
No 14
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=99.24 E-value=1e-11 Score=98.30 Aligned_cols=57 Identities=16% Similarity=0.066 Sum_probs=52.9
Q ss_pred CCCCccccccCCCCCCCeeeCCC-CccchhhHHHHHhcCCCCCCccCCCCCCCceecc
Q 017241 315 APGVSKCTLCLSNRQDPTATPCG-HVFCWNCIMEWCNEKPECPLCRAPITHSSLVCLY 371 (375)
Q Consensus 315 ~~~~~~C~iC~~~~~~p~~~~Cg-H~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~l~ 371 (375)
..+++.|+||++.+.+|+.++|| |+||..||..|+.....||.|++++...+++|..
T Consensus 19 ~p~~~~CpI~~~~m~dPV~~~cG~htf~r~cI~~~l~~~~~cP~~~~~l~~~~L~pn~ 76 (98)
T 1wgm_A 19 ACDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLSDQTDPFNRSPLTMDQIRPNT 76 (98)
T ss_dssp CCTTTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHTTTSCBCTTTCSBCCTTTSEECH
T ss_pred CcHhcCCcCccccccCCeECCCCCeEECHHHHHHHHHhCCCCCCCCCCCChhhceEcH
Confidence 45689999999999999999999 9999999999998888999999999999988864
No 15
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.24 E-value=1.3e-12 Score=103.85 Aligned_cols=57 Identities=32% Similarity=0.829 Sum_probs=51.4
Q ss_pred CCCccccccCCCCCCCee-eCCCCccchhhHHHHHhcC-CCCCCccCCCCCCCceeccC
Q 017241 316 PGVSKCTLCLSNRQDPTA-TPCGHVFCWNCIMEWCNEK-PECPLCRAPITHSSLVCLYH 372 (375)
Q Consensus 316 ~~~~~C~iC~~~~~~p~~-~~CgH~fC~~Ci~~~~~~~-~~CP~Cr~~~~~~~~~~l~~ 372 (375)
.+...|+||++.+.+|+. ++|||.||+.||..|+... ..||.||.++...++++.+.
T Consensus 20 ~~~~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~l~~~~~ 78 (100)
T 3lrq_A 20 AEVFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQLRELVNCRW 78 (100)
T ss_dssp HHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCEECTT
T ss_pred CCCCCCccCCccccCccccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCCHHHhHhhHH
Confidence 356899999999999999 9999999999999999877 79999999999888887654
No 16
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.23 E-value=1e-11 Score=93.78 Aligned_cols=56 Identities=25% Similarity=0.628 Sum_probs=48.3
Q ss_pred CCCccccccCCCCCCC---eeeCCCCccchhhHHHHHhcCCCCCCccCCCCCCCceecc
Q 017241 316 PGVSKCTLCLSNRQDP---TATPCGHVFCWNCIMEWCNEKPECPLCRAPITHSSLVCLY 371 (375)
Q Consensus 316 ~~~~~C~iC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~l~ 371 (375)
.+...|+||++.+.++ ..++|||.||..||..|++.+..||+||+.+...++.+.-
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~ 71 (78)
T 2ect_A 13 GSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSLTGQNTATNP 71 (78)
T ss_dssp SSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTTTCSCTTTCCCCCCSCSCCCC
T ss_pred CCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHcCCcCcCcCCccCCcccCCCC
Confidence 4578999999998765 4469999999999999999889999999999988776643
No 17
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.22 E-value=3.1e-12 Score=96.78 Aligned_cols=57 Identities=30% Similarity=0.679 Sum_probs=50.6
Q ss_pred CCCccccccCCCCCCCeeeCCCCccchhhHHHHHhc-------CCCCCCccCCCCCCCceeccC
Q 017241 316 PGVSKCTLCLSNRQDPTATPCGHVFCWNCIMEWCNE-------KPECPLCRAPITHSSLVCLYH 372 (375)
Q Consensus 316 ~~~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~~-------~~~CP~Cr~~~~~~~~~~l~~ 372 (375)
.+...|+||++.+.+|+.++|||.||..|+..|+.. ...||.||..+...++.+.+.
T Consensus 10 ~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~~l~~n~~ 73 (79)
T 2egp_A 10 QEEVTCPICLELLTEPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFEHLQANQH 73 (79)
T ss_dssp CCCCEETTTTEECSSCCCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSSGGGTCSS
T ss_pred ccCCCCcCCCcccCCeeECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHhhCCcCHH
Confidence 457899999999999999999999999999999875 579999999999888776654
No 18
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.22 E-value=6.7e-12 Score=91.47 Aligned_cols=58 Identities=24% Similarity=0.615 Sum_probs=49.1
Q ss_pred CCccccccCC-CCCCC----eeeCCCCccchhhHHHHHh-cCCCCCCccCCCCCCCceeccCCC
Q 017241 317 GVSKCTLCLS-NRQDP----TATPCGHVFCWNCIMEWCN-EKPECPLCRAPITHSSLVCLYHSD 374 (375)
Q Consensus 317 ~~~~C~iC~~-~~~~p----~~~~CgH~fC~~Ci~~~~~-~~~~CP~Cr~~~~~~~~~~l~~~~ 374 (375)
++..|+||++ .+.+| +.++|||+||..|+..|+. ....||.||+++..+++.+.+.-|
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~d 65 (65)
T 1g25_A 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKSNFRVQLFED 65 (65)
T ss_dssp CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSSCCCEEECCCC
T ss_pred CCCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCccccccceeecccC
Confidence 3578999999 77777 4679999999999999965 446899999999999999887544
No 19
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.21 E-value=1.3e-11 Score=96.20 Aligned_cols=56 Identities=27% Similarity=0.612 Sum_probs=47.7
Q ss_pred CCCCccccccCCCCCCCeeeC-CCCccchhhHHHHHhc--CCCCCCccCCC-CCCCceec
Q 017241 315 APGVSKCTLCLSNRQDPTATP-CGHVFCWNCIMEWCNE--KPECPLCRAPI-THSSLVCL 370 (375)
Q Consensus 315 ~~~~~~C~iC~~~~~~p~~~~-CgH~fC~~Ci~~~~~~--~~~CP~Cr~~~-~~~~~~~l 370 (375)
..+...|+||++.+.+|+.++ |||.||..||..|+.. ...||.||.++ ....+.+.
T Consensus 10 ~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~~~~n 69 (92)
T 3ztg_A 10 IPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDALIAN 69 (92)
T ss_dssp CCTTTEETTTTEECSSCEECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSCCTTSCEEC
T ss_pred CCcCCCCCCCChhhcCceECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCCCccccCcC
Confidence 456799999999999999999 9999999999999864 36999999997 45566553
No 20
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.20 E-value=7.3e-12 Score=92.03 Aligned_cols=49 Identities=35% Similarity=0.918 Sum_probs=44.1
Q ss_pred CCCccccccCCCCCCC-------eeeCCCCccchhhHHHHHhcCCCCCCccCCCCC
Q 017241 316 PGVSKCTLCLSNRQDP-------TATPCGHVFCWNCIMEWCNEKPECPLCRAPITH 364 (375)
Q Consensus 316 ~~~~~C~iC~~~~~~p-------~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 364 (375)
.+...|+||++.+.++ +.++|||.||..||..|+.....||+||+++..
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 13 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH 68 (69)
T ss_dssp TCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHHCSSCTTTCCCCCC
T ss_pred CCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHcCCCCCCCCCccCc
Confidence 4578999999998776 788999999999999999989999999998864
No 21
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.19 E-value=1.6e-11 Score=94.80 Aligned_cols=57 Identities=26% Similarity=0.658 Sum_probs=48.9
Q ss_pred CCCCccccccCCCCCC----CeeeCCCCccchhhHHHHHhcC---CCCCCccCCCCCCCceecc
Q 017241 315 APGVSKCTLCLSNRQD----PTATPCGHVFCWNCIMEWCNEK---PECPLCRAPITHSSLVCLY 371 (375)
Q Consensus 315 ~~~~~~C~iC~~~~~~----p~~~~CgH~fC~~Ci~~~~~~~---~~CP~Cr~~~~~~~~~~l~ 371 (375)
..+...|+||++.+.+ |+.++|||.||..|+..|+... ..||.||+.+...++..+.
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~i~~l~ 75 (88)
T 2ct2_A 12 LREVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRITSLTQLT 75 (88)
T ss_dssp CCSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCSSTTTSE
T ss_pred ccCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccchhHHHHH
Confidence 3457899999999988 8999999999999999999865 7999999998876665443
No 22
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.15 E-value=3.2e-11 Score=88.53 Aligned_cols=47 Identities=38% Similarity=1.125 Sum_probs=43.0
Q ss_pred CCccccccCCCCCCC-eeeCCCCccchhhHHHHHhcCCCCCCccCCCC
Q 017241 317 GVSKCTLCLSNRQDP-TATPCGHVFCWNCIMEWCNEKPECPLCRAPIT 363 (375)
Q Consensus 317 ~~~~C~iC~~~~~~p-~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 363 (375)
.+..|+||++.+.+| +.++|||.||..|+..|+..+..||.||.++.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~ 51 (68)
T 1chc_A 4 VAERCPICLEDPSNYSMALPCLHAFCYVCITRWIRQNPTCPLCKVPVE 51 (68)
T ss_dssp CCCCCSSCCSCCCSCEEETTTTEEESTTHHHHHHHHSCSTTTTCCCCC
T ss_pred CCCCCeeCCccccCCcEecCCCCeeHHHHHHHHHhCcCcCcCCChhhH
Confidence 457899999999986 77899999999999999998899999999886
No 23
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=99.15 E-value=3.8e-13 Score=130.52 Aligned_cols=150 Identities=21% Similarity=0.387 Sum_probs=85.9
Q ss_pred cccchhhhhhcCc-----eEEeecCCCCCChhHHHHHHHHHHHHHHHHhhchhccccccccccccccccccccccCC-CC
Q 017241 209 GLYYHISKRTAGI-----RYVFIGKPTNQRPRYQILGVFLLIQLCIIAAEGLRRSNLSSIASSVHHTSLGFQQASTG-RG 282 (375)
Q Consensus 209 G~Yy~l~kRi~gi-----ryv~~~~~~~~~~sy~~Lg~lll~ql~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~-~~ 282 (375)
=.|+++.+|+-|. .|+|.- ...+.++.+||+++++|.+++.+...+........+ ...+.+.-+.+ ..
T Consensus 226 ~ty~ev~~~Lk~~~~~~GsYIfRl--s~trlGq~~LG~v~~~q~ivqti~~~ksl~~~l~d~----~~~g~yl~p~g~~~ 299 (389)
T 2y1n_A 226 LTYDEVKARLQKFIHKPGSYIFRL--SCTRLGQWAIGYVTADGNILQTIPHNKPLFQALIDG----FREGFYLFPDGRNQ 299 (389)
T ss_dssp CCHHHHHHHHGGGTTSTTEEEEEE--CSSSTTSEEEEEECTTSCEEEECCCSSCHHHHHHHH----HHTTSSCEETTCSC
T ss_pred ccHHHHHHHHHHhhccCCceEecc--CcchHhHHHHHHHHHHHHHHHHHHhHHHHHHHHhhh----cccCccccCCCCcC
Confidence 3688999999999 888853 234556778888888877766665554433211110 00000000000 00
Q ss_pred CcccCCCCCCCCCCCCCCCccccCCCCc-c--cCCCCCCccccccCCCCCCCeeeCCCCccchhhHHHHHh-cCCCCCCc
Q 017241 283 LPVLNEEGSLIPSESDKGGWVLDSTSTS-E--SQAAPGVSKCTLCLSNRQDPTATPCGHVFCWNCIMEWCN-EKPECPLC 358 (375)
Q Consensus 283 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~-~~~~CP~C 358 (375)
.+.+.. ........ ..+..... + .........|+||++.+.+|+.+||||.||+.|+..|+. ....||.|
T Consensus 300 ~p~l~~----l~~~~~~~--~i~ls~e~~~~~~e~~~~~~~C~ICle~~~~pv~lpCGH~FC~~Ci~~wl~~~~~~CP~C 373 (389)
T 2y1n_A 300 NPDLTG----LCEPTPQD--HIKVTQEQYELYCEMGSTFQLCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFC 373 (389)
T ss_dssp CCCCTT----TTC---------CCCHHHHHHHHHTTTSSSBCTTTSSSBCCEEEETTCCEECHHHHHHHHHHTCSBCTTT
T ss_pred Cccccc----cccccccc--cccccHHHHHHHHhhcCCCCCCCccCcCCCCeEEeCCCChhhHHHHHHHHhcCCCCCCCC
Confidence 000000 00000000 00000000 0 011233479999999999999999999999999999998 67899999
Q ss_pred cCCCCCCCceec
Q 017241 359 RAPITHSSLVCL 370 (375)
Q Consensus 359 r~~~~~~~~~~l 370 (375)
|.++....++.+
T Consensus 374 R~~i~~~~~i~v 385 (389)
T 2y1n_A 374 RCEIKGTEPIVV 385 (389)
T ss_dssp CCBCCEEEECSC
T ss_pred CCccCCceeEec
Confidence 999987655443
No 24
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.15 E-value=4e-11 Score=88.31 Aligned_cols=49 Identities=37% Similarity=0.823 Sum_probs=42.7
Q ss_pred CCCccccccCCCCC---CCeeeCCCCccchhhHHHHHhcCCCCCCccCCCCC
Q 017241 316 PGVSKCTLCLSNRQ---DPTATPCGHVFCWNCIMEWCNEKPECPLCRAPITH 364 (375)
Q Consensus 316 ~~~~~C~iC~~~~~---~p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 364 (375)
.....|+||++.+. .+..++|||.||..||..|+..+..||+||..+..
T Consensus 12 ~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 63 (69)
T 2kiz_A 12 DTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDIEA 63 (69)
T ss_dssp TCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHHCSBCTTTCSBSCS
T ss_pred CCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHcCCCCcCcCccccC
Confidence 45679999999875 35678999999999999999988899999998864
No 25
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.14 E-value=1.4e-11 Score=103.64 Aligned_cols=47 Identities=36% Similarity=0.872 Sum_probs=44.1
Q ss_pred CccccccCCCCCCCeeeCCCCccchhhHHHHHhcCCCCCCccCCCCC
Q 017241 318 VSKCTLCLSNRQDPTATPCGHVFCWNCIMEWCNEKPECPLCRAPITH 364 (375)
Q Consensus 318 ~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 364 (375)
+..|+||++.+.+|+.++|||.||..||..|+..+..||.||+++..
T Consensus 53 ~~~C~iC~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 99 (138)
T 4ayc_A 53 ELQCIICSEYFIEAVTLNCAHSFCSYCINEWMKRKIECPICRKDIKS 99 (138)
T ss_dssp HSBCTTTCSBCSSEEEETTSCEEEHHHHHHHTTTCSBCTTTCCBCCC
T ss_pred cCCCcccCcccCCceECCCCCCccHHHHHHHHHcCCcCCCCCCcCCC
Confidence 46899999999999999999999999999999999999999999864
No 26
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.13 E-value=1.7e-11 Score=90.52 Aligned_cols=54 Identities=31% Similarity=0.871 Sum_probs=47.4
Q ss_pred CCCccccccCCCCCCCeeeCCCCccchhhHHHHHhcCCCCCCccCCCCCCCceec
Q 017241 316 PGVSKCTLCLSNRQDPTATPCGHVFCWNCIMEWCNEKPECPLCRAPITHSSLVCL 370 (375)
Q Consensus 316 ~~~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~l 370 (375)
.+...|+||++.+.+ +.++|||.||..|+..|+.....||.||+++...+...+
T Consensus 13 ~~~~~C~IC~~~~~~-~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~ 66 (70)
T 2ecn_A 13 TDEEECCICMDGRAD-LILPCAHSFCQKCIDKWSDRHRNCPICRLQMTGANESSG 66 (70)
T ss_dssp CCCCCCSSSCCSCCS-EEETTTEEECHHHHHHSSCCCSSCHHHHHCTTCCCCCCC
T ss_pred CCCCCCeeCCcCccC-cccCCCCcccHHHHHHHHHCcCcCCCcCCcccCCCcccc
Confidence 456899999999988 899999999999999999988999999999986654443
No 27
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.12 E-value=4.9e-11 Score=83.69 Aligned_cols=47 Identities=34% Similarity=0.890 Sum_probs=41.7
Q ss_pred CCccccccCCCCCC---CeeeC-CCCccchhhHHHHHhcCCCCCCccCCCC
Q 017241 317 GVSKCTLCLSNRQD---PTATP-CGHVFCWNCIMEWCNEKPECPLCRAPIT 363 (375)
Q Consensus 317 ~~~~C~iC~~~~~~---p~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 363 (375)
++..|+||++.+.+ +..++ |||.||..|+..|++.+..||.||+++.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~ 54 (55)
T 1iym_A 4 DGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV 54 (55)
T ss_dssp CSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred CCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcCCcCcCCCCEeE
Confidence 46789999999876 67776 9999999999999999999999998764
No 28
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.12 E-value=4.2e-11 Score=83.99 Aligned_cols=47 Identities=36% Similarity=0.868 Sum_probs=41.8
Q ss_pred CCccccccCCCCCC----CeeeCCCCccchhhHHHHHhcCCCCCCccCCCC
Q 017241 317 GVSKCTLCLSNRQD----PTATPCGHVFCWNCIMEWCNEKPECPLCRAPIT 363 (375)
Q Consensus 317 ~~~~C~iC~~~~~~----p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 363 (375)
++..|+||++.+.+ ++.++|||.||..|+..|++....||+||+++.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLCSGPSS 54 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHTCCCTTSCCSSC
T ss_pred CCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcCCcCCCCCCcCC
Confidence 45789999999865 677899999999999999998899999998874
No 29
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.12 E-value=2.6e-11 Score=90.93 Aligned_cols=50 Identities=28% Similarity=0.765 Sum_probs=44.2
Q ss_pred CCCccccccCCCCCCC---eeeCCCCccchhhHHHHHhcCCCCCCccCCCCCC
Q 017241 316 PGVSKCTLCLSNRQDP---TATPCGHVFCWNCIMEWCNEKPECPLCRAPITHS 365 (375)
Q Consensus 316 ~~~~~C~iC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 365 (375)
.+...|+||++.+.++ ..++|||.||..||..|++.+..||+||+.+.+.
T Consensus 21 ~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~~ 73 (75)
T 1x4j_A 21 SEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRADSGPS 73 (75)
T ss_dssp SSCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHHCSSCTTTCCCCCCC
T ss_pred CCCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHcCCcCcCcCCcCCCC
Confidence 3567999999988876 6789999999999999999889999999988754
No 30
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.12 E-value=2.5e-11 Score=96.01 Aligned_cols=54 Identities=24% Similarity=0.604 Sum_probs=48.9
Q ss_pred CCccccccCCCCCCCeee-CCCCccchhhHHHHHhcCCCCCCccCCCCCCCceec
Q 017241 317 GVSKCTLCLSNRQDPTAT-PCGHVFCWNCIMEWCNEKPECPLCRAPITHSSLVCL 370 (375)
Q Consensus 317 ~~~~C~iC~~~~~~p~~~-~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~l 370 (375)
+...|+||++.+.+|+.+ +|||.||..|+..|+..+..||.||..+...++.+.
T Consensus 21 ~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~l~~n 75 (99)
T 2y43_A 21 DLLRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTVTEPDLKNN 75 (99)
T ss_dssp HHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCGGGCEEC
T ss_pred CCCCcccCChhhCCcCEECCCCCHhhHHHHHHHHHCCCCCCCCCCcCChhhCCcC
Confidence 468999999999999888 899999999999999988999999999987777654
No 31
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.12 E-value=7.4e-11 Score=85.25 Aligned_cols=44 Identities=36% Similarity=0.836 Sum_probs=39.6
Q ss_pred CCCCccccccCCCCCCCeeeCCCCccchhhHHHHHh---cCCCCCCc
Q 017241 315 APGVSKCTLCLSNRQDPTATPCGHVFCWNCIMEWCN---EKPECPLC 358 (375)
Q Consensus 315 ~~~~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~---~~~~CP~C 358 (375)
..+...|+||++.+.+|+.++|||+||..||..|++ ....||.|
T Consensus 17 ~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 17 LQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCCBCTTTCSBCSSCEECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred CccCCCCCcCCchhCCeEEeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 346789999999999999999999999999999997 45689998
No 32
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.11 E-value=5.6e-11 Score=95.96 Aligned_cols=56 Identities=36% Similarity=0.841 Sum_probs=49.4
Q ss_pred CCccccccCCCCCCCeeeCCCCccchhhHHHHHhcC---CCCCCccCCCCCCCceeccC
Q 017241 317 GVSKCTLCLSNRQDPTATPCGHVFCWNCIMEWCNEK---PECPLCRAPITHSSLVCLYH 372 (375)
Q Consensus 317 ~~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~---~~CP~Cr~~~~~~~~~~l~~ 372 (375)
+...|+||++.+.+|+.++|||.||..|+..|+... ..||.||.++...++.+...
T Consensus 20 ~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~ 78 (112)
T 1jm7_A 20 KILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSLQESTR 78 (112)
T ss_dssp HHTSCSSSCCCCSSCCBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTTCBCCCS
T ss_pred CCCCCcccChhhcCeEECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHhhcCccHH
Confidence 357899999999999999999999999999999754 48999999999888876543
No 33
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.10 E-value=7.2e-11 Score=88.13 Aligned_cols=49 Identities=29% Similarity=0.828 Sum_probs=42.7
Q ss_pred CCCccccccCCCCCCCeee---CCCCccchhhHHHHHhcCCCCCCccCCCCC
Q 017241 316 PGVSKCTLCLSNRQDPTAT---PCGHVFCWNCIMEWCNEKPECPLCRAPITH 364 (375)
Q Consensus 316 ~~~~~C~iC~~~~~~p~~~---~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 364 (375)
.+...|+||++.+.++..+ +|||.||..||..|++.+..||+||+++..
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~~ 64 (74)
T 2ep4_A 13 NLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKVCPLCNMPVLQ 64 (74)
T ss_dssp CCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHCSBCTTTCCBCSS
T ss_pred CCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcCCcCCCcCccccc
Confidence 4567999999998776544 999999999999999988899999998864
No 34
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.10 E-value=4.6e-11 Score=98.55 Aligned_cols=53 Identities=23% Similarity=0.518 Sum_probs=46.0
Q ss_pred CCccccccCCCCCCCeeeCCCCccchhhHHHHHhcC-CCCCCccCCCCC-CCcee
Q 017241 317 GVSKCTLCLSNRQDPTATPCGHVFCWNCIMEWCNEK-PECPLCRAPITH-SSLVC 369 (375)
Q Consensus 317 ~~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~-~~CP~Cr~~~~~-~~~~~ 369 (375)
+...|+||++.+.+|+.++|||.||..||..|+... ..||.||.++.. ..+.+
T Consensus 51 ~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~ 105 (124)
T 3fl2_A 51 ETFQCICCQELVFRPITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGRSYAMQV 105 (124)
T ss_dssp HHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTTCCCCC
T ss_pred cCCCCCcCChHHcCcEEeeCCCcccHHHHHHHHhHCcCCCCCCCccCCCCCCCCC
Confidence 467999999999999999999999999999999754 599999999976 44433
No 35
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.09 E-value=5.2e-11 Score=95.77 Aligned_cols=50 Identities=28% Similarity=0.658 Sum_probs=46.1
Q ss_pred CCCccccccCCCCCCCeee-CCCCccchhhHHHHHhcCCCCCCccCCCCCC
Q 017241 316 PGVSKCTLCLSNRQDPTAT-PCGHVFCWNCIMEWCNEKPECPLCRAPITHS 365 (375)
Q Consensus 316 ~~~~~C~iC~~~~~~p~~~-~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 365 (375)
.+...|+||++.+.+|+.+ +|||.||..||..|+.....||.|+..+...
T Consensus 13 ~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 63 (108)
T 2ckl_A 13 NPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLETSKYCPICDVQVHKT 63 (108)
T ss_dssp GGGTBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHTSCSBCTTTCCBSCSS
T ss_pred CCcCCCccCChHHhCcCEeCCCCChhhHHHHHHHHHhCCcCcCCCcccccc
Confidence 3578999999999999998 9999999999999999889999999998765
No 36
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=99.09 E-value=5e-11 Score=92.92 Aligned_cols=49 Identities=29% Similarity=0.681 Sum_probs=43.6
Q ss_pred CCCccccccCCCCCC---CeeeCCCCccchhhHHHHHhcCCCCCCccCCCCC
Q 017241 316 PGVSKCTLCLSNRQD---PTATPCGHVFCWNCIMEWCNEKPECPLCRAPITH 364 (375)
Q Consensus 316 ~~~~~C~iC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 364 (375)
.++..|+||++.+.+ +..++|||.||..||..|++.+..||+||..+..
T Consensus 38 ~~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 38 GQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQKSGTCPVCRCMFPP 89 (91)
T ss_dssp SSCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTTTCBCTTTCCBSSC
T ss_pred CCCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHcCCcCcCcCccCCC
Confidence 457899999998876 6778999999999999999988999999998864
No 37
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.07 E-value=4.4e-11 Score=99.18 Aligned_cols=57 Identities=32% Similarity=0.808 Sum_probs=52.4
Q ss_pred CCCccccccCCCCCCC-------eeeCCCCccchhhHHHHHhcCCCCCCccCCCCCCCceeccC
Q 017241 316 PGVSKCTLCLSNRQDP-------TATPCGHVFCWNCIMEWCNEKPECPLCRAPITHSSLVCLYH 372 (375)
Q Consensus 316 ~~~~~C~iC~~~~~~p-------~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~l~~ 372 (375)
.++..|+||++.+.+| +.++|||+||+.||..|++.+..||.||+.+...++.+++.
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~l~~l~i 68 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRYHPIYI 68 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTCSBCTTTCCBCTTTCEEECBC
T ss_pred CCCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHhCCCCCCCCCcCcccccccccc
Confidence 4568999999999888 88999999999999999999999999999999999998874
No 38
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.06 E-value=1.4e-10 Score=82.09 Aligned_cols=43 Identities=35% Similarity=0.988 Sum_probs=38.5
Q ss_pred CCCccccccCCCCCCCeeeCCCCccchhhHHHHHh---cCCCCCCc
Q 017241 316 PGVSKCTLCLSNRQDPTATPCGHVFCWNCIMEWCN---EKPECPLC 358 (375)
Q Consensus 316 ~~~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~---~~~~CP~C 358 (375)
.+...|+||++.+.+|+.++|||+||..||..|+. ....||.|
T Consensus 13 ~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 13 QVEASCSVCLEYLKEPVIIECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CCCCBCSSSCCBCSSCCCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred ccCCCCccCCcccCccEeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 45789999999999999999999999999999954 55799998
No 39
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.06 E-value=8.3e-11 Score=109.84 Aligned_cols=57 Identities=21% Similarity=0.285 Sum_probs=50.6
Q ss_pred CCCCccccccCCCCCCCeeeCCCCccchhhHHHHHhcC-CCCCCccCCCCCCCceecc
Q 017241 315 APGVSKCTLCLSNRQDPTATPCGHVFCWNCIMEWCNEK-PECPLCRAPITHSSLVCLY 371 (375)
Q Consensus 315 ~~~~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~-~~CP~Cr~~~~~~~~~~l~ 371 (375)
..+.+.|+||++.+.+|+.++|||+||..||..|+... ..||.|+.++...+++|..
T Consensus 205 ~~~~~~c~i~~~~~~dPv~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~~~l~~n~ 262 (281)
T 2c2l_A 205 IPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQLIPNL 262 (281)
T ss_dssp CCSTTBCTTTCSBCSSEEECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCGGGCEECH
T ss_pred CCcccCCcCcCCHhcCCeECCCCCEECHHHHHHHHHHCCCCCcCCCCCCchhcCcccH
Confidence 35678999999999999999999999999999999754 4599999999988888753
No 40
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=99.06 E-value=5.8e-11 Score=97.11 Aligned_cols=56 Identities=27% Similarity=0.631 Sum_probs=49.2
Q ss_pred CCCCccccccCCCCCCCeeeCCCCccchhhHHHHHhcCC-CCCCccCCCCCCCceec
Q 017241 315 APGVSKCTLCLSNRQDPTATPCGHVFCWNCIMEWCNEKP-ECPLCRAPITHSSLVCL 370 (375)
Q Consensus 315 ~~~~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~-~CP~Cr~~~~~~~~~~l 370 (375)
..+...|+||++.+.+|+.++|||+||..||..|+.... .||.||.++...++.+.
T Consensus 15 ~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~ 71 (118)
T 3hct_A 15 LESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPD 71 (118)
T ss_dssp CCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGCEEC
T ss_pred CCCCCCCCcCChhhcCeEECCcCChhhHHHHHHHHhhCCCCCCCCCCCcCHHhcccC
Confidence 345789999999999999999999999999999997654 99999999988776653
No 41
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.03 E-value=1.1e-10 Score=91.63 Aligned_cols=56 Identities=21% Similarity=0.466 Sum_probs=48.4
Q ss_pred CCCccccccCCCCCCCeeeC-CCCccchhhHHHHHhcC------CCCCC--ccCC-CCCCCceecc
Q 017241 316 PGVSKCTLCLSNRQDPTATP-CGHVFCWNCIMEWCNEK------PECPL--CRAP-ITHSSLVCLY 371 (375)
Q Consensus 316 ~~~~~C~iC~~~~~~p~~~~-CgH~fC~~Ci~~~~~~~------~~CP~--Cr~~-~~~~~~~~l~ 371 (375)
.+.+.|+||++.+.+|+.++ |||+||..||..|+... ..||. |+.. +...+++|..
T Consensus 5 ~~~~~CPI~~~~~~dPV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~~~~L~pn~ 70 (94)
T 2yu4_A 5 SSGFTCPITKEEMKKPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRKSDLIQDE 70 (94)
T ss_dssp SSCCBCTTTCSBCSSEEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBCGGGEEECH
T ss_pred CcEeECcCcCchhcCCEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccCHhhCcCCH
Confidence 45789999999999999996 99999999999999743 59999 8877 8878887753
No 42
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=99.02 E-value=1.3e-10 Score=99.22 Aligned_cols=49 Identities=24% Similarity=0.568 Sum_probs=44.7
Q ss_pred CCccccccCCCCCCCeeeCCCCccchhhHHHHHhcC-CCCCCccCCCCCC
Q 017241 317 GVSKCTLCLSNRQDPTATPCGHVFCWNCIMEWCNEK-PECPLCRAPITHS 365 (375)
Q Consensus 317 ~~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~-~~CP~Cr~~~~~~ 365 (375)
+...|+||++.+.+|+.++|||.||..||..|+... ..||.||..+...
T Consensus 77 ~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 126 (150)
T 1z6u_A 77 QSFMCVCCQELVYQPVTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQN 126 (150)
T ss_dssp HHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTT
T ss_pred cCCEeecCChhhcCCEEcCCCCchhHHHHHHHHHhCCCcCCCCCccCCCC
Confidence 457999999999999999999999999999999865 4899999999876
No 43
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=99.01 E-value=1.4e-10 Score=101.19 Aligned_cols=56 Identities=21% Similarity=0.288 Sum_probs=50.7
Q ss_pred CCCccccccCCCCCCCeeeCCCCccchhhHHHHHhcC-CCCCCccCCCCCCCceecc
Q 017241 316 PGVSKCTLCLSNRQDPTATPCGHVFCWNCIMEWCNEK-PECPLCRAPITHSSLVCLY 371 (375)
Q Consensus 316 ~~~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~-~~CP~Cr~~~~~~~~~~l~ 371 (375)
++.+.|+||++.+.+|+.++|||+||..||..|+... ..||.|+.++...+++|..
T Consensus 104 p~~f~CPI~~elm~DPV~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~~~L~pN~ 160 (179)
T 2f42_A 104 PDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQDQLIPNL 160 (179)
T ss_dssp CGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCEECH
T ss_pred cHhhcccCccccCCCCeECCCCCEECHHHHHHHHHhCCCCCCCCcCCCChhhCcchH
Confidence 5679999999999999999999999999999999753 4799999999988888864
No 44
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.00 E-value=6.3e-11 Score=98.24 Aligned_cols=56 Identities=32% Similarity=0.835 Sum_probs=51.4
Q ss_pred CCCccccccCCCCCCC-------eeeCCCCccchhhHHHHHhcCCCCCCccCCCCCCCceecc
Q 017241 316 PGVSKCTLCLSNRQDP-------TATPCGHVFCWNCIMEWCNEKPECPLCRAPITHSSLVCLY 371 (375)
Q Consensus 316 ~~~~~C~iC~~~~~~p-------~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~l~ 371 (375)
.+...|+||++.+.++ +.++|||+||..|+.+|++....||.||.++..++++|+|
T Consensus 70 ~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~ 132 (133)
T 4ap4_A 70 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRYHPIY 132 (133)
T ss_dssp SSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHHCSBCTTTCCBCCGGGEEEEC
T ss_pred CCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHcCCCCCCCCCcCChhcceeee
Confidence 4567899999988765 7889999999999999999999999999999999999987
No 45
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=99.00 E-value=1.4e-10 Score=84.40 Aligned_cols=54 Identities=26% Similarity=0.745 Sum_probs=47.8
Q ss_pred CCccccccCCCCCCCeee--CCCCc-cchhhHHHHHhcCCCCCCccCCCCCCCceeccC
Q 017241 317 GVSKCTLCLSNRQDPTAT--PCGHV-FCWNCIMEWCNEKPECPLCRAPITHSSLVCLYH 372 (375)
Q Consensus 317 ~~~~C~iC~~~~~~p~~~--~CgH~-fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~l~~ 372 (375)
++..|+||++...+++.+ ||||. ||+.|+..|.+.+..||+||+++. +++++|.
T Consensus 7 ~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~--~~i~i~~ 63 (64)
T 2vje_A 7 AIEPCVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPIQ--MIVLTYF 63 (64)
T ss_dssp GGSCCTTTSSSCSCEEEEETTEEEEEECHHHHHHHHHTTCCCTTTCCCCC--EEEEEEC
T ss_pred CcCCCCcCCCCCCCEEEECCCCCChhhHHHHHHHHHHcCCcCCCcCcchh--ceEeeec
Confidence 457899999999999887 99999 899999999988889999999986 6777764
No 46
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=98.98 E-value=1.8e-10 Score=93.74 Aligned_cols=53 Identities=32% Similarity=0.701 Sum_probs=47.9
Q ss_pred CCccccccCCCCCCCeeeCCCCccchhhHHHHHhc-CCCCCCccCCCCCCCcee
Q 017241 317 GVSKCTLCLSNRQDPTATPCGHVFCWNCIMEWCNE-KPECPLCRAPITHSSLVC 369 (375)
Q Consensus 317 ~~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~ 369 (375)
+...|+||++.+.+|+.++|||.||..||..|+.. ...||.||.++...++.+
T Consensus 22 ~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~ 75 (116)
T 1rmd_A 22 KSISCQICEHILADPVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTDLES 75 (116)
T ss_dssp HHTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCBC
T ss_pred CCCCCCCCCcHhcCcEEcCCCCcccHHHHHHHHhHCcCcCCCCCCCCCHhhccc
Confidence 46899999999999999999999999999999986 679999999998777654
No 47
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=98.97 E-value=3.4e-10 Score=91.75 Aligned_cols=47 Identities=21% Similarity=0.605 Sum_probs=39.8
Q ss_pred CccccccCCCCCCCe------------------eeCCCCccchhhHHHHHh-----cCCCCCCccCCCCC
Q 017241 318 VSKCTLCLSNRQDPT------------------ATPCGHVFCWNCIMEWCN-----EKPECPLCRAPITH 364 (375)
Q Consensus 318 ~~~C~iC~~~~~~p~------------------~~~CgH~fC~~Ci~~~~~-----~~~~CP~Cr~~~~~ 364 (375)
+..|+||++.+..+. .++|||.||..||..|+. .+..||+||..+..
T Consensus 25 ~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~ 94 (114)
T 1v87_A 25 EEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGE 94 (114)
T ss_dssp SCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSS
T ss_pred CCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCC
Confidence 468999999986654 678999999999999994 46799999998864
No 48
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.96 E-value=2.7e-10 Score=86.77 Aligned_cols=51 Identities=24% Similarity=0.640 Sum_probs=41.7
Q ss_pred CCccccccCCCCCC--------------Ceee-CCCCccchhhHHHHHhcCCCCCCccCCCCCCCc
Q 017241 317 GVSKCTLCLSNRQD--------------PTAT-PCGHVFCWNCIMEWCNEKPECPLCRAPITHSSL 367 (375)
Q Consensus 317 ~~~~C~iC~~~~~~--------------p~~~-~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 367 (375)
++..|+||++.+.+ ++.+ +|||.||..||..|++.+..||+||+++..+++
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~~~~ 79 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWVVQRI 79 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCCBCTTTCCBCCEEEE
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCCCCCCcCCCcchhhc
Confidence 35679999988865 3444 599999999999999999999999999875543
No 49
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.96 E-value=1.3e-10 Score=94.80 Aligned_cols=53 Identities=26% Similarity=0.696 Sum_probs=47.1
Q ss_pred CCCccccccCCCCCCCeee-CCCCccchhhHHHHHhcCCCCCCccCCCCCCCceec
Q 017241 316 PGVSKCTLCLSNRQDPTAT-PCGHVFCWNCIMEWCNEKPECPLCRAPITHSSLVCL 370 (375)
Q Consensus 316 ~~~~~C~iC~~~~~~p~~~-~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~l 370 (375)
.+...|+||++.+.+|+.+ +|||.||..||..|+. ..||.||.++...++.+.
T Consensus 20 ~~~~~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~~--~~CP~Cr~~~~~~~~~~n 73 (117)
T 1jm7_B 20 EKLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIG--TGCPVCYTPAWIQDLKIN 73 (117)
T ss_dssp HHTTSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGTT--TBCSSSCCBCSCSSCCCC
T ss_pred hhCCCCCCCChHhhCccEeCCCCCHHHHHHHHHHhc--CCCcCCCCcCcccccccc
Confidence 3578999999999999999 9999999999999987 789999999987776653
No 50
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=98.96 E-value=1.9e-10 Score=83.28 Aligned_cols=54 Identities=22% Similarity=0.636 Sum_probs=47.1
Q ss_pred CCccccccCCCCCCCeee--CCCCc-cchhhHHHHHhcCCCCCCccCCCCCCCceeccC
Q 017241 317 GVSKCTLCLSNRQDPTAT--PCGHV-FCWNCIMEWCNEKPECPLCRAPITHSSLVCLYH 372 (375)
Q Consensus 317 ~~~~C~iC~~~~~~p~~~--~CgH~-fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~l~~ 372 (375)
....|+||++...+++.+ ||||. ||+.|+..|.+....||+||+++. +++.+|.
T Consensus 6 ~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~--~~i~i~~ 62 (63)
T 2vje_B 6 LLKPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKAGASCPICKKEIQ--LVIKVFI 62 (63)
T ss_dssp GGSBCTTTSSSBSCEEEEETTEEEEEECHHHHHHHHHTTCBCTTTCCBCC--EEEEEEE
T ss_pred cCCCCcccCCcCCCeEEEecCCCCHhHHHHHHHHHHHhCCcCCCcCchhh--ceEEEec
Confidence 356899999999998877 99998 999999999888889999999986 6777763
No 51
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=98.95 E-value=8.8e-11 Score=95.47 Aligned_cols=49 Identities=24% Similarity=0.738 Sum_probs=44.0
Q ss_pred CCCccccccCCCCCCCeeeCCCCccchhhHHHHHhc-CCCCCCccCCCCC
Q 017241 316 PGVSKCTLCLSNRQDPTATPCGHVFCWNCIMEWCNE-KPECPLCRAPITH 364 (375)
Q Consensus 316 ~~~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~ 364 (375)
.++..|+||++.+.+|+.++|||.||..||..|+.. ...||.||..+..
T Consensus 13 ~~~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (115)
T 3l11_A 13 LSECQCGICMEILVEPVTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVSS 62 (115)
T ss_dssp HHHHBCTTTCSBCSSCEECTTSCEECHHHHCCCCCTTTSBCTTTCCBCHH
T ss_pred CCCCCCccCCcccCceeEcCCCCHHhHHHHHHHHhHCcCCCCCCCcccCc
Confidence 356899999999999999999999999999999875 6799999998763
No 52
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=98.95 E-value=3.5e-10 Score=97.86 Aligned_cols=49 Identities=31% Similarity=0.725 Sum_probs=44.2
Q ss_pred CCCccccccCCCCCCCeee-CCCCccchhhHHHHHhc-CCCCCCccCCCCC
Q 017241 316 PGVSKCTLCLSNRQDPTAT-PCGHVFCWNCIMEWCNE-KPECPLCRAPITH 364 (375)
Q Consensus 316 ~~~~~C~iC~~~~~~p~~~-~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~ 364 (375)
.+...|+||++.+.+|+.+ +|||.||..||..|+.. ...||.||.++..
T Consensus 52 ~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 102 (165)
T 2ckl_B 52 HSELMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVS 102 (165)
T ss_dssp HHHHBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCCS
T ss_pred CCCCCCcccChHhhCcCEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCCC
Confidence 3567999999999999988 99999999999999986 6899999999854
No 53
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=98.94 E-value=3.4e-10 Score=81.41 Aligned_cols=55 Identities=11% Similarity=0.261 Sum_probs=51.0
Q ss_pred CccccccCCCCCCCeee-CCCCccchhhHHHHHhcCCCCCCccCCCCCCCceeccC
Q 017241 318 VSKCTLCLSNRQDPTAT-PCGHVFCWNCIMEWCNEKPECPLCRAPITHSSLVCLYH 372 (375)
Q Consensus 318 ~~~C~iC~~~~~~p~~~-~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~l~~ 372 (375)
.+.|+||++.+.+|+.+ +|||+||+.||..|++.+..||.+++++...+++|+..
T Consensus 3 ~~~CpIs~~~m~dPV~~~~sG~~yer~~I~~~l~~~~~cP~t~~~L~~~~Lip~~~ 58 (61)
T 2bay_A 3 HMLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSIEEIVEIVP 58 (61)
T ss_dssp -CCCTTTCSCCSSEEEETTTTEEEEHHHHHHHHHHHSBCTTTCCBCCGGGCEECCC
T ss_pred eEEecCCCCCCCCCEEeCCCCcEEcHHHHHHHHHhCCCCcCCcCCCChhhcEECcc
Confidence 47899999999999999 89999999999999987778999999999999999874
No 54
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.94 E-value=2.8e-10 Score=80.36 Aligned_cols=46 Identities=28% Similarity=0.753 Sum_probs=40.6
Q ss_pred CCCccccccCCCCCCCeeeCCCCccchhhHHHHHhcCCCCCCccCCCCC
Q 017241 316 PGVSKCTLCLSNRQDPTATPCGHVFCWNCIMEWCNEKPECPLCRAPITH 364 (375)
Q Consensus 316 ~~~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 364 (375)
.+...|+||++.+.+|+.++|||.||..|+.. ....||.||+.+..
T Consensus 4 ~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~---~~~~CP~Cr~~~~~ 49 (56)
T 1bor_A 4 FQFLRCQQCQAEAKCPKLLPCLHTLCSGCLEA---SGMQCPICQAPWPL 49 (56)
T ss_dssp CCCSSCSSSCSSCBCCSCSTTSCCSBTTTCSS---SSSSCSSCCSSSSC
T ss_pred ccCCCceEeCCccCCeEEcCCCCcccHHHHcc---CCCCCCcCCcEeec
Confidence 45688999999999999999999999999976 35789999998864
No 55
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=98.92 E-value=1.1e-09 Score=82.77 Aligned_cols=53 Identities=30% Similarity=0.655 Sum_probs=42.7
Q ss_pred CCCccccccCCCCC--CCeeeC--CCCccchhhHHHHHh-cCCCCCCccCCCCCCCce
Q 017241 316 PGVSKCTLCLSNRQ--DPTATP--CGHVFCWNCIMEWCN-EKPECPLCRAPITHSSLV 368 (375)
Q Consensus 316 ~~~~~C~iC~~~~~--~p~~~~--CgH~fC~~Ci~~~~~-~~~~CP~Cr~~~~~~~~~ 368 (375)
.++..|+||++.+. ++...| |||.||..|+..+.. ....||.||+++....+.
T Consensus 9 ~~~~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~~~~ 66 (78)
T 1e4u_A 9 EDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPEDPAV 66 (78)
T ss_dssp CCCCBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCSSCSSC
T ss_pred ccCCcCCccCccCccccccccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccCCCchh
Confidence 45789999999874 345555 999999999999874 457999999999876653
No 56
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.87 E-value=4.1e-10 Score=84.27 Aligned_cols=49 Identities=27% Similarity=0.647 Sum_probs=43.1
Q ss_pred CCccccccCCCCCCCeeeCCCCc-cchhhHHHHHhcCCCCCCccCCCCCCCceecc
Q 017241 317 GVSKCTLCLSNRQDPTATPCGHV-FCWNCIMEWCNEKPECPLCRAPITHSSLVCLY 371 (375)
Q Consensus 317 ~~~~C~iC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~l~ 371 (375)
++..|+||++.+.+++.+||||. ||..|+..| ..||.||+++. ..+++|
T Consensus 23 ~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~--~~~~i~ 72 (74)
T 4ic3_A 23 EEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAV----DKCPMCYTVIT--FKQKIL 72 (74)
T ss_dssp HHTBCTTTSSSBCCEEEETTCCBCCCHHHHTTC----SBCTTTCCBCS--EEEECB
T ss_pred cCCCCCCCCCCCCCEEEcCCCChhHHHHhhhcC----ccCCCcCcCcc--CcEEEe
Confidence 46799999999999999999999 999999877 89999999887 455555
No 57
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=98.86 E-value=4.7e-10 Score=94.64 Aligned_cols=49 Identities=20% Similarity=0.509 Sum_probs=43.8
Q ss_pred CCCCccccccCCCCCCCeeeCCCCccchhhHHHHHhcC-CCCCCccCCCC
Q 017241 315 APGVSKCTLCLSNRQDPTATPCGHVFCWNCIMEWCNEK-PECPLCRAPIT 363 (375)
Q Consensus 315 ~~~~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~-~~CP~Cr~~~~ 363 (375)
..+.+.|+||++.+.+|+.++|||.||..||..|+... ..||.||.++.
T Consensus 28 l~~~~~C~IC~~~~~~pv~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~ 77 (141)
T 3knv_A 28 LEAKYLCSACRNVLRRPFQAQCGHRYCSFCLASILSSGPQNCAACVHEGI 77 (141)
T ss_dssp CCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHGGGSCEECHHHHHTTC
T ss_pred CCcCcCCCCCChhhcCcEECCCCCccCHHHHHHHHhcCCCCCCCCCCccc
Confidence 35678999999999999999999999999999999765 49999999764
No 58
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.84 E-value=4.8e-09 Score=77.06 Aligned_cols=51 Identities=24% Similarity=0.622 Sum_probs=44.1
Q ss_pred CCCccccccCCCCCCCeeeCCCCc-cchhhHHHHHhcCCCCCCccCCCCCCCceeccC
Q 017241 316 PGVSKCTLCLSNRQDPTATPCGHV-FCWNCIMEWCNEKPECPLCRAPITHSSLVCLYH 372 (375)
Q Consensus 316 ~~~~~C~iC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~l~~ 372 (375)
.+...|.||++...+++.+||||. ||+.|+.. ...||+||.++. ..+++|.
T Consensus 13 ~~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~----~~~CP~CR~~i~--~~~~i~~ 64 (68)
T 2ea5_A 13 ENSKDCVVCQNGTVNWVLLPCRHTCLCDGCVKY----FQQCPMCRQFVQ--ESFALSG 64 (68)
T ss_dssp CCSSCCSSSSSSCCCCEETTTTBCCSCTTHHHH----CSSCTTTCCCCC--CEECCCS
T ss_pred CCCCCCCCcCcCCCCEEEECCCChhhhHHHHhc----CCCCCCCCcchh--ceEEeec
Confidence 457899999999999999999999 99999973 479999999887 5667764
No 59
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=98.81 E-value=1.5e-09 Score=94.24 Aligned_cols=56 Identities=27% Similarity=0.634 Sum_probs=49.1
Q ss_pred CCCCccccccCCCCCCCeeeCCCCccchhhHHHHHhcC-CCCCCccCCCCCCCceec
Q 017241 315 APGVSKCTLCLSNRQDPTATPCGHVFCWNCIMEWCNEK-PECPLCRAPITHSSLVCL 370 (375)
Q Consensus 315 ~~~~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~-~~CP~Cr~~~~~~~~~~l 370 (375)
..+.+.|+||++.+.+|+.++|||+||..||..|+... ..||.||.++...++.|.
T Consensus 15 ~~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~ 71 (170)
T 3hcs_A 15 LESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPD 71 (170)
T ss_dssp CCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGCEEC
T ss_pred CCCCCCCCCCChhhcCcEECCCCCHHHHHHHHHHHHhCCCCCCCCccCcchhhhhhh
Confidence 35678999999999999999999999999999999754 599999999988776653
No 60
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=98.81 E-value=2.4e-09 Score=85.66 Aligned_cols=47 Identities=28% Similarity=0.674 Sum_probs=40.6
Q ss_pred CCccccccCCCCCCC------------------eeeCCCCccchhhHHHHHhcCCCCCCccCCCC
Q 017241 317 GVSKCTLCLSNRQDP------------------TATPCGHVFCWNCIMEWCNEKPECPLCRAPIT 363 (375)
Q Consensus 317 ~~~~C~iC~~~~~~p------------------~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 363 (375)
++..|+||++.+..+ +.++|||.||..||..|+..+..||+||+.+.
T Consensus 36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~ 100 (106)
T 3dpl_R 36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWE 100 (106)
T ss_dssp CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTCSBCSSSCSBCC
T ss_pred CCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHcCCcCcCCCCcce
Confidence 356899999988754 33789999999999999999999999999865
No 61
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.76 E-value=3.8e-09 Score=79.11 Aligned_cols=49 Identities=27% Similarity=0.706 Sum_probs=41.6
Q ss_pred CCccccccCCCCCCCeeeCCCCc-cchhhHHHHHhcCCCCCCccCCCCCCCceecc
Q 017241 317 GVSKCTLCLSNRQDPTATPCGHV-FCWNCIMEWCNEKPECPLCRAPITHSSLVCLY 371 (375)
Q Consensus 317 ~~~~C~iC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~l~ 371 (375)
+...|+||++.+.+|+.+||||. ||..|+.. ...||.||.++.. .+++|
T Consensus 24 ~~~~C~IC~~~~~~~~~~pCgH~~~C~~C~~~----~~~CP~Cr~~i~~--~~~i~ 73 (75)
T 2ecg_A 24 EEKLCKICMDRNIAIVFVPCGHLVTCKQCAEA----VDKCPMCYTVITF--KQKIF 73 (75)
T ss_dssp HHHSCSSSCSSCCCBCCSSSCCCCBCHHHHHH----CSBCTTTCCBCCC--CCBCC
T ss_pred CCCCCCcCCCCCCCEEEecCCCHHHHHHHhhC----CCCCccCCceecC--cEEEe
Confidence 46789999999999999999999 99999953 4789999999873 45554
No 62
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=98.68 E-value=4.9e-09 Score=95.99 Aligned_cols=55 Identities=20% Similarity=0.413 Sum_probs=48.9
Q ss_pred CCCccccccCCCCCCCeee-CCCCccchhhHHHHHhcC--CCCCC--ccCCCCCCCceec
Q 017241 316 PGVSKCTLCLSNRQDPTAT-PCGHVFCWNCIMEWCNEK--PECPL--CRAPITHSSLVCL 370 (375)
Q Consensus 316 ~~~~~C~iC~~~~~~p~~~-~CgH~fC~~Ci~~~~~~~--~~CP~--Cr~~~~~~~~~~l 370 (375)
..+..|+||++.+.+|+.. .|||+||..||..|+... ..||. |++.+...+++|-
T Consensus 179 ~~el~CPIcl~~f~DPVts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~~dL~pN 238 (267)
T 3htk_C 179 KIELTCPITCKPYEAPLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSMRDFVRD 238 (267)
T ss_dssp BCCSBCTTTSSBCSSEEEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEECGGGEEEC
T ss_pred ceeeECcCccCcccCCeeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCchhhCCcC
Confidence 4678999999999999985 999999999999999754 58999 9999998888774
No 63
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=98.63 E-value=4.8e-09 Score=85.28 Aligned_cols=49 Identities=27% Similarity=0.640 Sum_probs=0.8
Q ss_pred CCccccccCCCCCCCe------------------eeCCCCccchhhHHHHHhcCCCCCCccCCCCCC
Q 017241 317 GVSKCTLCLSNRQDPT------------------ATPCGHVFCWNCIMEWCNEKPECPLCRAPITHS 365 (375)
Q Consensus 317 ~~~~C~iC~~~~~~p~------------------~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 365 (375)
++..|+||++.+.++. .++|+|.||..||..|++.+..||+||+++..+
T Consensus 47 ~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~~~~~ 113 (117)
T 4a0k_B 47 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWEFQ 113 (117)
T ss_dssp CC-----------------------------------------------------------------
T ss_pred CCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcCCcCCCCCCeeeee
Confidence 3468999999886531 248999999999999999999999999987543
No 64
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.59 E-value=7.7e-09 Score=78.27 Aligned_cols=49 Identities=31% Similarity=0.852 Sum_probs=41.5
Q ss_pred CCccccccCCCCCCCeeeCCCCc-cchhhHHHHHhcCCCCCCccCCCCCCCceecc
Q 017241 317 GVSKCTLCLSNRQDPTATPCGHV-FCWNCIMEWCNEKPECPLCRAPITHSSLVCLY 371 (375)
Q Consensus 317 ~~~~C~iC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~l~ 371 (375)
+...|+||++...+++.+||||. ||..|+..| ..||.||.++.. .+.+|
T Consensus 17 ~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~~--~~~i~ 66 (79)
T 2yho_A 17 EAMLCMVCCEEEINSTFCPCGHTVCCESCAAQL----QSCPVCRSRVEH--VQHVY 66 (79)
T ss_dssp HHTBCTTTSSSBCCEEEETTCBCCBCHHHHTTC----SBCTTTCCBCCE--EEECB
T ss_pred CCCEeEEeCcccCcEEEECCCCHHHHHHHHHhc----CcCCCCCchhhC--eEEEE
Confidence 45689999999999999999999 999999765 499999998873 45554
No 65
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.49 E-value=1.2e-07 Score=71.82 Aligned_cols=55 Identities=24% Similarity=0.616 Sum_probs=43.3
Q ss_pred CCCccccccCCCCC--CCeeeCCC-----CccchhhHHHHHhcC--CCCCCccCCCCC-CCceec
Q 017241 316 PGVSKCTLCLSNRQ--DPTATPCG-----HVFCWNCIMEWCNEK--PECPLCRAPITH-SSLVCL 370 (375)
Q Consensus 316 ~~~~~C~iC~~~~~--~p~~~~Cg-----H~fC~~Ci~~~~~~~--~~CP~Cr~~~~~-~~~~~l 370 (375)
.+...|.||++.+. ++..+||. |.||..||..|+..+ ..||+|+..+.. ..+.|+
T Consensus 13 ~~~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~~~~~~P~ 77 (80)
T 2d8s_A 13 SSQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIMETKLSGP 77 (80)
T ss_dssp TTSCCCSSSCCCCCSSSCEECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCCCCCSCCC
T ss_pred CCCCCCeEcCccccCCCeeEeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeecCcccCCC
Confidence 45678999998764 57778996 999999999999754 599999999864 334443
No 66
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.48 E-value=3.3e-08 Score=95.15 Aligned_cols=50 Identities=28% Similarity=0.775 Sum_probs=43.5
Q ss_pred CCCccccccCCCCCCCeeeCCCCc-cchhhHHHHHhcCCCCCCccCCCCCCCceecc
Q 017241 316 PGVSKCTLCLSNRQDPTATPCGHV-FCWNCIMEWCNEKPECPLCRAPITHSSLVCLY 371 (375)
Q Consensus 316 ~~~~~C~iC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~l~ 371 (375)
.++..|+||++.+.+|+.+||||. ||..|+..| ..||.||.++. ..+.+|
T Consensus 293 ~~~~~C~IC~~~~~~~v~lpCgH~~fC~~C~~~~----~~CP~CR~~i~--~~~~i~ 343 (345)
T 3t6p_A 293 QEERTCKVCMDKEVSVVFIPCGHLVVCQECAPSL----RKCPICRGIIK--GTVRTF 343 (345)
T ss_dssp HTTCBCTTTSSSBCCEEEETTCCEEECTTTGGGC----SBCTTTCCBCC--EEEECC
T ss_pred cCCCCCCccCCcCCceEEcCCCChhHhHHHHhcC----CcCCCCCCCcc--CeEEee
Confidence 356899999999999999999999 999999876 78999999887 455555
No 67
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.34 E-value=6.5e-08 Score=75.50 Aligned_cols=53 Identities=28% Similarity=0.726 Sum_probs=41.4
Q ss_pred CCccccccCCCCCCCeee---CCCCccchhhHHHHHhc--------CCCCCC--ccCC--CCCCCcee
Q 017241 317 GVSKCTLCLSNRQDPTAT---PCGHVFCWNCIMEWCNE--------KPECPL--CRAP--ITHSSLVC 369 (375)
Q Consensus 317 ~~~~C~iC~~~~~~p~~~---~CgH~fC~~Ci~~~~~~--------~~~CP~--Cr~~--~~~~~~~~ 369 (375)
+...|+||++.+..+..+ +|||.||..|+..++.. ...||. |+.. +.+..+..
T Consensus 4 ~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~~~~~~~~i~~ 71 (94)
T 1wim_A 4 GSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQGHLQENEIEC 71 (94)
T ss_dssp SBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSCCEECHHHHHH
T ss_pred CCcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCCCccCHHHHHH
Confidence 467899999998877543 79999999999998752 248999 9998 66555443
No 68
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.15 E-value=2.6e-06 Score=63.25 Aligned_cols=47 Identities=23% Similarity=0.609 Sum_probs=39.2
Q ss_pred CCccccccCCCCCCCe-eeCCCCccchhhHHHHHhcC--CCCCCccCCCC
Q 017241 317 GVSKCTLCLSNRQDPT-ATPCGHVFCWNCIMEWCNEK--PECPLCRAPIT 363 (375)
Q Consensus 317 ~~~~C~iC~~~~~~p~-~~~CgH~fC~~Ci~~~~~~~--~~CP~Cr~~~~ 363 (375)
....|+||.+.+.... ...|+|.|+..||..|++.. ..||+|+....
T Consensus 14 ~i~~C~IC~~~i~~g~~C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~ 63 (74)
T 2ct0_A 14 AVKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWP 63 (74)
T ss_dssp SSCBCSSSCCBCSSSEECSSSCCEECHHHHHHHSTTCSSCCCTTTCSCCC
T ss_pred CCCcCcchhhHcccCCccCCCCchhhHHHHHHHHHhcCCCCCCCCcCcCC
Confidence 3568999999886543 34799999999999999876 89999998865
No 69
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=97.92 E-value=5.4e-06 Score=64.25 Aligned_cols=45 Identities=29% Similarity=0.719 Sum_probs=37.0
Q ss_pred cccccCCCCCC-CeeeCCCCccchhhHHHHHh-cCCCCCCccCCCCC
Q 017241 320 KCTLCLSNRQD-PTATPCGHVFCWNCIMEWCN-EKPECPLCRAPITH 364 (375)
Q Consensus 320 ~C~iC~~~~~~-p~~~~CgH~fC~~Ci~~~~~-~~~~CP~Cr~~~~~ 364 (375)
-|..|.-++.. ...+||+|+||++|+..|.+ ....||.|+.++..
T Consensus 3 fC~~C~~Pi~iygRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~r 49 (101)
T 3vk6_A 3 FCDKCGLPIKVYGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQR 49 (101)
T ss_dssp BCTTTCSBCSEEEEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCSE
T ss_pred ecCccCCCeEEEeeeccccccHHHHHHHHHHhccCCCCcCcCCeeee
Confidence 58888777664 45679999999999999975 56899999998863
No 70
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=97.75 E-value=2.2e-05 Score=55.79 Aligned_cols=48 Identities=19% Similarity=0.540 Sum_probs=38.8
Q ss_pred CCCccccccCCCCCCCeeeCCC--C---ccchhhHHHHHhc--CCCCCCccCCCC
Q 017241 316 PGVSKCTLCLSNRQDPTATPCG--H---VFCWNCIMEWCNE--KPECPLCRAPIT 363 (375)
Q Consensus 316 ~~~~~C~iC~~~~~~p~~~~Cg--H---~fC~~Ci~~~~~~--~~~CP~Cr~~~~ 363 (375)
.+...|.||++...++...||. + .|+..|+..|+.. +..||+|+..+.
T Consensus 4 ~~~~~CrIC~~~~~~~l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~ 58 (60)
T 1vyx_A 4 EDVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN 58 (60)
T ss_dssp CSCCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCCEeEEeecCCCCceecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence 3467899999876667778865 4 7999999999964 579999998875
No 71
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=97.68 E-value=1.1e-05 Score=76.48 Aligned_cols=49 Identities=27% Similarity=0.736 Sum_probs=38.4
Q ss_pred CCCccccccCCCCCC----C--ee--eCCCCccchhhHHHHHhcC-----------CCCCCccCCCCC
Q 017241 316 PGVSKCTLCLSNRQD----P--TA--TPCGHVFCWNCIMEWCNEK-----------PECPLCRAPITH 364 (375)
Q Consensus 316 ~~~~~C~iC~~~~~~----p--~~--~~CgH~fC~~Ci~~~~~~~-----------~~CP~Cr~~~~~ 364 (375)
.....|+||++.+.+ | ++ ..|||.|+..|+.+|++.. ..||.|+++++.
T Consensus 306 e~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~ 373 (381)
T 3k1l_B 306 NEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLST 373 (381)
T ss_dssp CSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEG
T ss_pred cCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCc
Confidence 457799999997765 2 12 3799999999999999732 379999998763
No 72
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=96.29 E-value=0.0032 Score=57.17 Aligned_cols=47 Identities=26% Similarity=0.648 Sum_probs=38.1
Q ss_pred CccccccCCCCCCCe-eeCCCCccchhhHHHHHhcC--CCCCCccCCCCC
Q 017241 318 VSKCTLCLSNRQDPT-ATPCGHVFCWNCIMEWCNEK--PECPLCRAPITH 364 (375)
Q Consensus 318 ~~~C~iC~~~~~~p~-~~~CgH~fC~~Ci~~~~~~~--~~CP~Cr~~~~~ 364 (375)
-..|.+|.+...... +..|+|.|+..|+..|++.. ..||.|+...+.
T Consensus 180 i~~C~iC~~iv~~g~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~ 229 (238)
T 3nw0_A 180 VKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPH 229 (238)
T ss_dssp CCBCTTTCSBCSSCEECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCCS
T ss_pred CCcCcchhhHHhCCcccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCCC
Confidence 568999999877544 34599999999999999754 599999987654
No 73
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=95.42 E-value=0.0092 Score=63.79 Aligned_cols=58 Identities=16% Similarity=0.118 Sum_probs=53.2
Q ss_pred CCCCCccccccCCCCCCCeeeCCC-CccchhhHHHHHhcCCCCCCccCCCCCCCceecc
Q 017241 314 AAPGVSKCTLCLSNRQDPTATPCG-HVFCWNCIMEWCNEKPECPLCRAPITHSSLVCLY 371 (375)
Q Consensus 314 ~~~~~~~C~iC~~~~~~p~~~~Cg-H~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~l~ 371 (375)
+.++.+.|||-.+.+.+|+.+|.| ++|-..+|..|+..+..||.-|++++..+++|..
T Consensus 887 ~iP~~F~cPIs~~lM~DPVilpsG~~TydR~~I~~wl~~~~tdP~Tr~~L~~~~liPN~ 945 (968)
T 3m62_A 887 DVPDEFLDPLMYTIMKDPVILPASKMNIDRSTIKAHLLSDSTDPFNRMPLKLEDVTPNE 945 (968)
T ss_dssp CSCGGGBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCGGGCEECH
T ss_pred CCcHHhCCcchhhHHhCCeEcCCCCEEECHHHHHHHHhcCCCCCCCCCCCCcccccccH
Confidence 457789999999999999999998 5899999999999889999999999999998864
No 74
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=93.46 E-value=0.035 Score=42.94 Aligned_cols=31 Identities=23% Similarity=0.619 Sum_probs=25.9
Q ss_pred CCccccccCCC-CCCCee--eCCCCccchhhHHH
Q 017241 317 GVSKCTLCLSN-RQDPTA--TPCGHVFCWNCIME 347 (375)
Q Consensus 317 ~~~~C~iC~~~-~~~p~~--~~CgH~fC~~Ci~~ 347 (375)
++..|.+|.+. ..+++. +.|+|.||..|+..
T Consensus 2 ee~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~ 35 (101)
T 2jun_A 2 EKVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKA 35 (101)
T ss_dssp CCCBCTTCCSSSCCBCCEEETTTTEEECHHHHHH
T ss_pred CCCCCcCCCCCCCCCceEECCcCChHHhHHHCHH
Confidence 35789999975 556665 89999999999998
No 75
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=92.45 E-value=0.23 Score=36.48 Aligned_cols=35 Identities=31% Similarity=0.706 Sum_probs=29.3
Q ss_pred CCCccccccCCCCCCCeeeCC----CCccchhhHHHHHh
Q 017241 316 PGVSKCTLCLSNRQDPTATPC----GHVFCWNCIMEWCN 350 (375)
Q Consensus 316 ~~~~~C~iC~~~~~~p~~~~C----gH~fC~~Ci~~~~~ 350 (375)
.....|.+|.+.+.+.....| +|.||..|-...++
T Consensus 13 ~a~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr~sIk 51 (93)
T 2cs3_A 13 SGPLCCTICHERLEDTHFVQCPSVPSHKFCFPCSRESIK 51 (93)
T ss_dssp CCSCCCSSSCSCCSSTTSEECSSCSSCEECHHHHHHHHH
T ss_pred CCeeEeecchhhhccCceeeCCCccCCeeeccccHHHHH
Confidence 456899999999998776655 68899999988876
No 76
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=90.05 E-value=0.49 Score=35.93 Aligned_cols=49 Identities=24% Similarity=0.688 Sum_probs=39.1
Q ss_pred CCCccccccCCCCCCCeeeCCC-CccchhhHHHHHhcCCCCCCccCCCCCCC
Q 017241 316 PGVSKCTLCLSNRQDPTATPCG-HVFCWNCIMEWCNEKPECPLCRAPITHSS 366 (375)
Q Consensus 316 ~~~~~C~iC~~~~~~p~~~~Cg-H~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~ 366 (375)
-....|..|.-..+ ..+.|. |-.|..|+...+.....||+|..++..+-
T Consensus 26 ~G~~nCKsCWf~~k--~LV~C~dHYLCl~CLtlmL~~SdrCpIC~~pLPtkl 75 (99)
T 2ko5_A 26 LGPQFCKSCWFENK--GLVECNNHYLCLNCLTLLLSVSNRCPICKMPLPTKL 75 (99)
T ss_dssp SCCCCCCSSCSCCS--SEEECSSCEEEHHHHHHTCSSSSEETTTTEECCCCS
T ss_pred cCcccChhhccccC--CeeeecchhhHHHHHHHHHhhccCCcccCCcCCcce
Confidence 45688999987644 455665 77999999999999999999999886543
No 77
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=84.86 E-value=0.96 Score=32.17 Aligned_cols=46 Identities=20% Similarity=0.557 Sum_probs=32.5
Q ss_pred CCccccccCCCCCCCeeeCCCCccchhhHHHHHhcC----CCCCCccCCC
Q 017241 317 GVSKCTLCLSNRQDPTATPCGHVFCWNCIMEWCNEK----PECPLCRAPI 362 (375)
Q Consensus 317 ~~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~----~~CP~Cr~~~ 362 (375)
....|.+|.+.-..-..-.|...|+.+|+...+... -.||.|....
T Consensus 11 ~~~~C~vC~~~~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~~ 60 (66)
T 2lri_C 11 PGARCGVCGDGTDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGDV 60 (66)
T ss_dssp TTCCCTTTSCCTTCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTCC
T ss_pred CCCCcCCCCCCCeEEECCCCCCceecccCCCccCcCCCCCEECccccCCC
Confidence 456799998753322344799999999997666533 4899997644
No 78
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=79.50 E-value=0.46 Score=33.21 Aligned_cols=34 Identities=24% Similarity=0.761 Sum_probs=23.5
Q ss_pred CccccccCCCCCCC------eeeC--CCCccchhhHHHHHhc
Q 017241 318 VSKCTLCLSNRQDP------TATP--CGHVFCWNCIMEWCNE 351 (375)
Q Consensus 318 ~~~C~iC~~~~~~p------~~~~--CgH~fC~~Ci~~~~~~ 351 (375)
...||-|...+... +... |++.|||.|...|...
T Consensus 6 ~k~CP~C~~~Iek~~GCnhmtC~~~~C~~~FCw~C~~~~~~~ 47 (60)
T 1wd2_A 6 TKECPKCHVTIEKDGGCNHMVCRNQNCKAEFCWVCLGPWEPH 47 (60)
T ss_dssp CCCCTTTCCCCSSCCSCCSSSCCSSGGGSCCSSSSCSCSGGG
T ss_pred ceECcCCCCeeEeCCCCCcEEECCCCcCCEEeeCcCCCcccC
Confidence 45788887766531 2233 8999999999887653
No 79
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=74.35 E-value=2 Score=41.04 Aligned_cols=51 Identities=20% Similarity=0.584 Sum_probs=38.5
Q ss_pred CCccccccCCCCCCCeee-CCCCccchhhHHHHHh-----cCCCCCCccCCCCCCCce
Q 017241 317 GVSKCTLCLSNRQDPTAT-PCGHVFCWNCIMEWCN-----EKPECPLCRAPITHSSLV 368 (375)
Q Consensus 317 ~~~~C~iC~~~~~~p~~~-~CgH~fC~~Ci~~~~~-----~~~~CP~Cr~~~~~~~~~ 368 (375)
-...|++-...+..|+.- .|.|.-|.+-. .|+. ....||.|.+.+...+|+
T Consensus 248 vSL~CPlS~~ri~~PvRg~~C~HlQCFDl~-sfL~~~~~~~~W~CPIC~k~~~~~dL~ 304 (371)
T 3i2d_A 248 MSLQCPISYTRMKYPSKSINCKHLQCFDAL-WFLHSQLQIPTWQCPVCQIDIALENLA 304 (371)
T ss_dssp EESBCTTTSSBCSSEEEETTCCSSCCEEHH-HHHHHHHHSCCCBCTTTCCBCCGGGEE
T ss_pred EeecCCCccccccccCcCCcCCCcceECHH-HHHHHhhcCCceeCCCCCcccCHHHee
Confidence 357999999999998765 69999887653 3332 346999999998877764
No 80
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=69.00 E-value=0.49 Score=37.95 Aligned_cols=42 Identities=26% Similarity=0.543 Sum_probs=26.9
Q ss_pred CCccccccCCCCCC----CeeeCCCCccchhhHHHHHhcCCCCCCc
Q 017241 317 GVSKCTLCLSNRQD----PTATPCGHVFCWNCIMEWCNEKPECPLC 358 (375)
Q Consensus 317 ~~~~C~iC~~~~~~----p~~~~CgH~fC~~Ci~~~~~~~~~CP~C 358 (375)
+...|..|...+.. -.+-.||.+||..|..........|-.|
T Consensus 18 ~~~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~~~~vRVC~~C 63 (120)
T 1y02_A 18 LEPSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVGNGPRLCLLC 63 (120)
T ss_dssp --CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC----CCEEHHH
T ss_pred ccCcccCcCCccccccccccCCCCCCeeCHHHhCCCCCCceECHHH
Confidence 34689999988753 2456899999999975443334456555
No 81
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=68.85 E-value=3.2 Score=39.46 Aligned_cols=50 Identities=22% Similarity=0.470 Sum_probs=38.2
Q ss_pred CccccccCCCCCCCeee-CCCCccchhhHHHHHh-----cCCCCCCccCCCCCCCce
Q 017241 318 VSKCTLCLSNRQDPTAT-PCGHVFCWNCIMEWCN-----EKPECPLCRAPITHSSLV 368 (375)
Q Consensus 318 ~~~C~iC~~~~~~p~~~-~CgH~fC~~Ci~~~~~-----~~~~CP~Cr~~~~~~~~~ 368 (375)
...|++-...+..|+.- .|.|.-|.+-. .|+. ....||.|.+.+...+|+
T Consensus 215 SL~CPlS~~ri~~P~Rg~~C~HlqCFDl~-sfL~~~~~~~~W~CPiC~k~~~~~dL~ 270 (360)
T 4fo9_A 215 SLMCPLGKMRLTIPCRAVTCTHLQCFDAA-LYLQMNEKKPTWICPVCDKKAAYESLI 270 (360)
T ss_dssp ESBCTTTCSBCSSEEEETTCCCCCCEEHH-HHHHHHHHSCCCBCTTTCSBCCGGGEE
T ss_pred eeeCCCccceeccCCcCCCCCCCccCCHH-HHHHHHhhCCCeECCCCCcccCHHHeE
Confidence 57999999999988764 69999777653 3332 346999999998877664
No 82
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=68.47 E-value=3.3 Score=29.25 Aligned_cols=33 Identities=24% Similarity=0.702 Sum_probs=25.9
Q ss_pred CCCccccccCCCCCCCeeeCC-CCccchhhHHHHH
Q 017241 316 PGVSKCTLCLSNRQDPTATPC-GHVFCWNCIMEWC 349 (375)
Q Consensus 316 ~~~~~C~iC~~~~~~p~~~~C-gH~fC~~Ci~~~~ 349 (375)
++..-|.||.+.- .-.+..| |-+||..|..+.-
T Consensus 6 ee~pWC~ICneDA-tlrC~gCdgDLYC~rC~rE~H 39 (67)
T 2d8v_A 6 SGLPWCCICNEDA-TLRCAGCDGDLYCARCFREGH 39 (67)
T ss_dssp CCCSSCTTTCSCC-CEEETTTTSEEECSSHHHHHT
T ss_pred cCCCeeEEeCCCC-eEEecCCCCceehHHHHHHHc
Confidence 4567899999983 3456789 7899999998764
No 83
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=66.80 E-value=2.7 Score=29.17 Aligned_cols=40 Identities=28% Similarity=0.634 Sum_probs=28.4
Q ss_pred ccccccCCCCCCCe---eeCCCCccchhhHHHHHhcCCCCCCc
Q 017241 319 SKCTLCLSNRQDPT---ATPCGHVFCWNCIMEWCNEKPECPLC 358 (375)
Q Consensus 319 ~~C~iC~~~~~~p~---~~~CgH~fC~~Ci~~~~~~~~~CP~C 358 (375)
..|-.|...+.+.. ...|++.||.+|=.=....-..||-|
T Consensus 16 ~~C~~C~~~~~~~~~y~C~~C~~~FC~dCD~fiHe~Lh~CPgC 58 (59)
T 1z60_A 16 RFCYGCQGELKDQHVYVCAVCQNVFCVDCDVFVHDSLHSCPGC 58 (59)
T ss_dssp CEETTTTEECTTSEEECCTTTTCCBCHHHHHTTTTTSCSSSTT
T ss_pred CcccccCcccCCCccEECCccCcCcccchhHHHHhhccCCcCC
Confidence 46999988876544 45799999999943222334689987
No 84
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=66.43 E-value=7.3 Score=28.92 Aligned_cols=33 Identities=18% Similarity=0.368 Sum_probs=23.1
Q ss_pred CCCccccccCCCCCC--CeeeCCCCccchhhHHHH
Q 017241 316 PGVSKCTLCLSNRQD--PTATPCGHVFCWNCIMEW 348 (375)
Q Consensus 316 ~~~~~C~iC~~~~~~--p~~~~CgH~fC~~Ci~~~ 348 (375)
..+..|.||...-.+ --+--|+.+|+..|+.+.
T Consensus 13 ~~D~~C~VC~~~t~~~l~pCRvC~RvfH~~CL~r~ 47 (89)
T 1wil_A 13 VNDEMCDVCEVWTAESLFPCRVCTRVFHDGCLRRM 47 (89)
T ss_dssp CCSCCCTTTCCCCSSCCSSCSSSSSCCCHHHHHHH
T ss_pred CCCcccCccccccccceeccccccccccHhhcccc
Confidence 356799999743221 123458999999999986
No 85
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=65.48 E-value=0.67 Score=43.40 Aligned_cols=46 Identities=22% Similarity=0.471 Sum_probs=35.1
Q ss_pred CCCccccccCCCCCCCeee----CCC--CccchhhHHHHHhcCCCCCCccCC
Q 017241 316 PGVSKCTLCLSNRQDPTAT----PCG--HVFCWNCIMEWCNEKPECPLCRAP 361 (375)
Q Consensus 316 ~~~~~C~iC~~~~~~p~~~----~Cg--H~fC~~Ci~~~~~~~~~CP~Cr~~ 361 (375)
+....||+|.......+.. .=| +.+|..|-.+|-.....||.|...
T Consensus 180 ~~~~~CPvCGs~P~~s~l~~~g~~~G~R~l~Cs~C~t~W~~~R~~C~~Cg~~ 231 (309)
T 2fiy_A 180 ESRTLCPACGSPPMAGMIRQGGKETGLRYLSCSLCACEWHYVRIKCSHCEES 231 (309)
T ss_dssp TTCSSCTTTCCCEEEEEEEC----CCEEEEEETTTCCEEECCTTSCSSSCCC
T ss_pred ccCCCCCCCCCcCceeEEeecCCCCCcEEEEeCCCCCEEeecCcCCcCCCCC
Confidence 4567999999976544333 234 568999999998888999999875
No 86
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=65.08 E-value=3.9 Score=30.30 Aligned_cols=30 Identities=27% Similarity=0.677 Sum_probs=23.0
Q ss_pred CCccccccCCCCCC----CeeeCCCCccchhhHH
Q 017241 317 GVSKCTLCLSNRQD----PTATPCGHVFCWNCIM 346 (375)
Q Consensus 317 ~~~~C~iC~~~~~~----p~~~~CgH~fC~~Ci~ 346 (375)
+...|.+|...+.- -..-.||.+||..|..
T Consensus 13 ~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~ 46 (84)
T 1x4u_A 13 NFGNCTGCSATFSVLKKRRSCSNCGNSFCSRCCS 46 (84)
T ss_dssp CCSSCSSSCCCCCSSSCCEECSSSCCEECTTTSC
T ss_pred CCCcCcCcCCccccchhhhhhcCCCcEEChhhcC
Confidence 35689999998753 2456899999999964
No 87
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=64.72 E-value=3.8 Score=32.37 Aligned_cols=51 Identities=16% Similarity=0.222 Sum_probs=39.1
Q ss_pred CCccccccCCCCCC---CeeeCCCCccchhhHHHHHhcCCCCCCccCCCCCCCc
Q 017241 317 GVSKCTLCLSNRQD---PTATPCGHVFCWNCIMEWCNEKPECPLCRAPITHSSL 367 (375)
Q Consensus 317 ~~~~C~iC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 367 (375)
+-+.|..|...+.+ .....=|..||..|.......+..|..|.+++....+
T Consensus 31 ~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~cy~~~f~~~~~C~~C~~~I~~~~~ 84 (122)
T 1m3v_A 31 RCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNSGAGGSGGHMGSGGDV 84 (122)
T ss_dssp HHHCCSSSCCCTTTSEECCEEETTEEECHHHHHHHHCCCCSSSCSSCCSCCEES
T ss_pred hCCCcCCCCCcccccCCeEEEECCeeecHHHHHHHcCCCCccccCCCCcCchhe
Confidence 45789999988862 3455678899999998776555589999998886544
No 88
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=64.64 E-value=3.6 Score=30.45 Aligned_cols=31 Identities=23% Similarity=0.506 Sum_probs=23.8
Q ss_pred CCccccccCCCCCC----CeeeCCCCccchhhHHH
Q 017241 317 GVSKCTLCLSNRQD----PTATPCGHVFCWNCIME 347 (375)
Q Consensus 317 ~~~~C~iC~~~~~~----p~~~~CgH~fC~~Ci~~ 347 (375)
+...|.+|...+.- -..-.||++||..|...
T Consensus 20 ~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~ 54 (84)
T 1z2q_A 20 DAPACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRH 54 (84)
T ss_dssp TCCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCC
T ss_pred CCCCCcCcCCccccchhcccccCCCcEEChHHhCC
Confidence 45689999988753 24568999999999754
No 89
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=63.70 E-value=2.9 Score=33.57 Aligned_cols=29 Identities=28% Similarity=0.709 Sum_probs=22.6
Q ss_pred CccccccCCCCCC----CeeeCCCCccchhhHH
Q 017241 318 VSKCTLCLSNRQD----PTATPCGHVFCWNCIM 346 (375)
Q Consensus 318 ~~~C~iC~~~~~~----p~~~~CgH~fC~~Ci~ 346 (375)
...|.+|...|.- -.+-.||++||..|..
T Consensus 69 ~~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~ 101 (125)
T 1joc_A 69 VQNCMACGKGFSVTVRRHHCRQCGNIFCAECSA 101 (125)
T ss_dssp CCBCTTTCCBCCSSSCCEECTTTCCEECGGGSC
T ss_pred CCCCcCcCCccccccccccCCCCCeEEChHHhC
Confidence 4589999987753 2456899999999964
No 90
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=62.42 E-value=3.6 Score=30.34 Aligned_cols=31 Identities=26% Similarity=0.686 Sum_probs=23.5
Q ss_pred CCccccccCCCCCC----CeeeCCCCccchhhHHH
Q 017241 317 GVSKCTLCLSNRQD----PTATPCGHVFCWNCIME 347 (375)
Q Consensus 317 ~~~~C~iC~~~~~~----p~~~~CgH~fC~~Ci~~ 347 (375)
+...|.+|...+.- -..-.||.+||..|...
T Consensus 18 ~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~ 52 (82)
T 2yw8_A 18 EATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSN 52 (82)
T ss_dssp CCCBCTTTCCBCBTTBCCEECTTTCCEECSGGGCE
T ss_pred cCCcccCcCCcccCccccccCCCCCCEEChHHhCC
Confidence 35689999987753 24568999999999753
No 91
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=61.30 E-value=4.2 Score=30.49 Aligned_cols=31 Identities=26% Similarity=0.498 Sum_probs=23.6
Q ss_pred CCccccccCCCCCC----CeeeCCCCccchhhHHH
Q 017241 317 GVSKCTLCLSNRQD----PTATPCGHVFCWNCIME 347 (375)
Q Consensus 317 ~~~~C~iC~~~~~~----p~~~~CgH~fC~~Ci~~ 347 (375)
+...|.+|...+.- -....||.+||..|...
T Consensus 8 ~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~ 42 (88)
T 1wfk_A 8 MESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSF 42 (88)
T ss_dssp CCSBCTTTCCBCCSSSCEEECSSSCCEEETTTSCE
T ss_pred cCCCCcCcCCcccCccccccCCCCCCEEChhHcCC
Confidence 45689999987753 24568999999999754
No 92
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=60.48 E-value=4.4 Score=35.95 Aligned_cols=30 Identities=23% Similarity=0.654 Sum_probs=23.2
Q ss_pred CccccccCCCCCC----CeeeCCCCccchhhHHH
Q 017241 318 VSKCTLCLSNRQD----PTATPCGHVFCWNCIME 347 (375)
Q Consensus 318 ~~~C~iC~~~~~~----p~~~~CgH~fC~~Ci~~ 347 (375)
...|..|...+.- ..+..||++||..|...
T Consensus 164 ~~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~~ 197 (226)
T 3zyq_A 164 AEECHRCRVQFGVMTRKHHCRACGQIFCGKCSSK 197 (226)
T ss_dssp CSBCTTTCCBCBTTBCCEECTTTCCEECTTTCCE
T ss_pred CCCCcCcCCCCCccccccccCCCcCEeChhhcCC
Confidence 4589999987652 34678999999999753
No 93
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=60.18 E-value=1.8 Score=41.97 Aligned_cols=46 Identities=22% Similarity=0.442 Sum_probs=0.0
Q ss_pred CCccccccCCCCCC----CeeeCCCCccchhhHHHHHh-------cCCCCCCccCCC
Q 017241 317 GVSKCTLCLSNRQD----PTATPCGHVFCWNCIMEWCN-------EKPECPLCRAPI 362 (375)
Q Consensus 317 ~~~~C~iC~~~~~~----p~~~~CgH~fC~~Ci~~~~~-------~~~~CP~Cr~~~ 362 (375)
+...|..|...+.- -.+..||++||..|...... ....|-.|-..+
T Consensus 374 ~~~~c~~c~~~f~~~~r~h~Cr~Cg~~~C~~Cs~~~~~~~~~~~~~~rvC~~C~~~l 430 (434)
T 3mpx_A 374 HVMMCMNCGCDFSLTLRRHHCHACGKIVCRNCSRNKYPLKYLKDRMAKVCDGCFGEL 430 (434)
T ss_dssp ---------------------------------------------------------
T ss_pred cCCcCCCcCCCCCCcchhhhcccCcCEeehhhCCCeeeCCCCCCCcCEecHHHHHHH
Confidence 35689999887642 35678999999999865431 124677775544
No 94
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=59.66 E-value=3.3 Score=36.52 Aligned_cols=30 Identities=27% Similarity=0.585 Sum_probs=23.1
Q ss_pred CccccccCCCCCC----CeeeCCCCccchhhHHH
Q 017241 318 VSKCTLCLSNRQD----PTATPCGHVFCWNCIME 347 (375)
Q Consensus 318 ~~~C~iC~~~~~~----p~~~~CgH~fC~~Ci~~ 347 (375)
...|..|...+.- -.+-.||++||..|...
T Consensus 161 ~~~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs~~ 194 (220)
T 1dvp_A 161 GRVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTAK 194 (220)
T ss_dssp CSBCTTTCCBCCSSSCCEECTTTCCEECSTTSCE
T ss_pred CCccCCCCCccCCcccccccCCcCCEEChHHhCC
Confidence 4689999987652 34568999999999643
No 95
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=58.91 E-value=4.2 Score=28.16 Aligned_cols=46 Identities=17% Similarity=0.430 Sum_probs=30.1
Q ss_pred CCccccccCCCCCCCeeeCCCCccchhhHHHHHh----cCCCCCCccCCC
Q 017241 317 GVSKCTLCLSNRQDPTATPCGHVFCWNCIMEWCN----EKPECPLCRAPI 362 (375)
Q Consensus 317 ~~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~----~~~~CP~Cr~~~ 362 (375)
.+..|.+|.+.-.--..-.|...|+..|+..-+. ..-.||.|....
T Consensus 8 ~~~~C~vC~~~g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~ 57 (61)
T 1mm2_A 8 HMEFCRVCKDGGELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCPA 57 (61)
T ss_dssp SCSSCTTTCCCSSCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTTC
T ss_pred CCCcCCCCCCCCCEEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCch
Confidence 4567999986432223346888899999875333 234799996643
No 96
>4g9i_A Hydrogenase maturation protein HYPF; zinc finger, ATP binding, carbamoyla transferase; 4.50A {Thermococcus kodakarensis}
Probab=58.46 E-value=3.2 Score=43.78 Aligned_cols=49 Identities=33% Similarity=0.767 Sum_probs=37.6
Q ss_pred CCCCCccccccCCCCCCC----------eeeCCCCcc--------------------chhhHHHHHhc--------CCCC
Q 017241 314 AAPGVSKCTLCLSNRQDP----------TATPCGHVF--------------------CWNCIMEWCNE--------KPEC 355 (375)
Q Consensus 314 ~~~~~~~C~iC~~~~~~p----------~~~~CgH~f--------------------C~~Ci~~~~~~--------~~~C 355 (375)
..++--.|+-|+.++.+| .||.||..| |..|-.++-.. -..|
T Consensus 102 i~pD~a~C~~Cl~e~~dp~~rry~ypF~nCt~CGPR~tii~~lPYDR~~TsM~~F~mC~~C~~EY~dp~dRRfhAqp~aC 181 (772)
T 4g9i_A 102 IPPDIAICDDCLRELFDPTNKRYMYPFIVCTNCGPRFTIIEDLPYDRENTTMKEFPMCDFCRSEYEDPLNRRYHAEPTAC 181 (772)
T ss_dssp CCCCCCCCHHHHHHHSSTTSTTTTCTTCCCTTSSCCGGGCCSSSCCGGGSGGGGSCCCHHHHHHHHCSSSTTTTCTTCCC
T ss_pred cCCchhhhHHHHHHhcCCCCCccCCccccCCCCCchhhhhhcCCCCCCCCcCCCCCCChhHHHHhCCCCCCCCcCCCCCC
Confidence 557788999999887765 367788777 99999998752 2389
Q ss_pred CCccCCC
Q 017241 356 PLCRAPI 362 (375)
Q Consensus 356 P~Cr~~~ 362 (375)
|.|.-.+
T Consensus 182 ~~CGP~l 188 (772)
T 4g9i_A 182 PVCGPSY 188 (772)
T ss_dssp TTTSCCE
T ss_pred ccCCceE
Confidence 9997654
No 97
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=58.15 E-value=4 Score=30.73 Aligned_cols=30 Identities=27% Similarity=0.594 Sum_probs=23.0
Q ss_pred CccccccCCCCCC----CeeeCCCCccchhhHHH
Q 017241 318 VSKCTLCLSNRQD----PTATPCGHVFCWNCIME 347 (375)
Q Consensus 318 ~~~C~iC~~~~~~----p~~~~CgH~fC~~Ci~~ 347 (375)
...|.+|...+.- -....||++||..|...
T Consensus 20 ~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~ 53 (90)
T 3t7l_A 20 APNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNR 53 (90)
T ss_dssp CCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCE
T ss_pred CCcCcCCCCcccchhhCccccCCCCEECCcccCC
Confidence 4679999987652 34568999999999754
No 98
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=57.47 E-value=23 Score=25.89 Aligned_cols=42 Identities=14% Similarity=0.253 Sum_probs=29.4
Q ss_pred CCccccccCCCCCCCeeeCCCCccchhhHHHHHhcCCCCCCccCCCCCCC
Q 017241 317 GVSKCTLCLSNRQDPTATPCGHVFCWNCIMEWCNEKPECPLCRAPITHSS 366 (375)
Q Consensus 317 ~~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~ 366 (375)
....|..|.+.+.......-+..|+..| +.|-.|...+....
T Consensus 24 ~~~~C~~C~~~I~~~~~~a~~~~~H~~C--------F~C~~C~~~L~~~~ 65 (89)
T 1x64_A 24 RMPLCDKCGSGIVGAVVKARDKYRHPEC--------FVCADCNLNLKQKG 65 (89)
T ss_dssp SCCBCTTTCCBCCSCCEESSSCEECTTT--------CCCSSSCCCTTTSC
T ss_pred cCCCcccCCCEecccEEEECCceECccC--------CEecCCCCCCCCCC
Confidence 4567888888777655556677777777 56888887776543
No 99
>3ttc_A HYPF, transcriptional regulatory protein; Zn finger, nucleotide binding, hydrogenase maturation factor transferase; HET: ADP; 1.86A {Escherichia coli} PDB: 3tsp_A* 3tsu_A* 3ttf_A* 3ttd_A 3tsq_A
Probab=57.10 E-value=3.1 Score=42.94 Aligned_cols=49 Identities=31% Similarity=0.757 Sum_probs=35.6
Q ss_pred CCCCCccccccCCCCCCC----------eeeCCCCcc--------------------chhhHHHHHhc--------CCCC
Q 017241 314 AAPGVSKCTLCLSNRQDP----------TATPCGHVF--------------------CWNCIMEWCNE--------KPEC 355 (375)
Q Consensus 314 ~~~~~~~C~iC~~~~~~p----------~~~~CgH~f--------------------C~~Ci~~~~~~--------~~~C 355 (375)
...+--.|.-|+.++.+| .+|.||..| |..|..++-.. -..|
T Consensus 13 i~pD~a~C~~Cl~e~~dp~~Rry~YpF~nCt~CGPR~tii~~lPYDR~~TsM~~F~mC~~C~~EY~dp~dRRfHAqp~aC 92 (657)
T 3ttc_A 13 IVPDAATCPACLAEMNTPGERRYRYPFINCTHCGPRFTIIRAMPYDRPFTVMAAFPLCPACDKEYRDPLDRRFHAQPVAC 92 (657)
T ss_dssp CCCCBCCCHHHHHHHTSTTSTTTTCTTCCBTTBBCSGGGBSSSSCSGGGBGGGGSCCCHHHHHHHHCTTSTTTTCTTCCC
T ss_pred cCCchhhhHHHHHHhcCCCCcccCCccccCcCCCchHHhcccCCCCCCCCcccCCCCChHHHHHhCCCCCCcCcCCCCcC
Confidence 445667888888776654 256777766 99999998752 2489
Q ss_pred CCccCCC
Q 017241 356 PLCRAPI 362 (375)
Q Consensus 356 P~Cr~~~ 362 (375)
|.|.-.+
T Consensus 93 p~CGP~l 99 (657)
T 3ttc_A 93 PECGPYL 99 (657)
T ss_dssp TTTSCCE
T ss_pred cccCccc
Confidence 9997655
No 100
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=56.81 E-value=4.8 Score=28.89 Aligned_cols=28 Identities=25% Similarity=0.580 Sum_probs=21.7
Q ss_pred ccccccCCCCCC----CeeeCCCCccchhhHH
Q 017241 319 SKCTLCLSNRQD----PTATPCGHVFCWNCIM 346 (375)
Q Consensus 319 ~~C~iC~~~~~~----p~~~~CgH~fC~~Ci~ 346 (375)
..|.+|...+.- -..-.||.+||..|..
T Consensus 12 ~~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~ 43 (73)
T 1vfy_A 12 DACMICSKKFSLLNRKHHCRSCGGVFCQEHSS 43 (73)
T ss_dssp SBCTTTCCBCBTTBCCEECTTTCCEECGGGSC
T ss_pred CcccCCCCccCCccccccCCCCCEEEcccccC
Confidence 479999987653 2346899999999964
No 101
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=56.16 E-value=4.6 Score=27.93 Aligned_cols=45 Identities=18% Similarity=0.410 Sum_probs=29.9
Q ss_pred CCCccccccCCCCCCCeeeCCCCccchhhHHHHHh----cCCCCCCccC
Q 017241 316 PGVSKCTLCLSNRQDPTATPCGHVFCWNCIMEWCN----EKPECPLCRA 360 (375)
Q Consensus 316 ~~~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~----~~~~CP~Cr~ 360 (375)
..+..|.+|...-.--..-.|...|+..|+..-+. ..-.||.|..
T Consensus 9 ~~~~~C~vC~~~g~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~ 57 (61)
T 2l5u_A 9 DHQDYCEVCQQGGEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEK 57 (61)
T ss_dssp CCCSSCTTTSCCSSEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGG
T ss_pred CCCCCCccCCCCCcEEECCCCChhhhhhccCCCCCCCCCCceECccccc
Confidence 44678999987422112236888899999976432 2348999964
No 102
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=55.62 E-value=17 Score=25.88 Aligned_cols=38 Identities=13% Similarity=0.216 Sum_probs=25.0
Q ss_pred CccccccCCCCCCCeeeCCCCccchhhHHHHHhcCCCCCCccCCCC
Q 017241 318 VSKCTLCLSNRQDPTATPCGHVFCWNCIMEWCNEKPECPLCRAPIT 363 (375)
Q Consensus 318 ~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 363 (375)
...|..|.+.+.......-+..|+..| +.|-.|+.++.
T Consensus 15 ~~~C~~C~~~I~~~~~~a~~~~~H~~C--------F~C~~C~~~L~ 52 (79)
T 1x62_A 15 LPMCDKCGTGIVGVFVKLRDRHRHPEC--------YVCTDCGTNLK 52 (79)
T ss_dssp CCCCSSSCCCCCSSCEECSSCEECTTT--------TSCSSSCCCHH
T ss_pred CCccccCCCCccCcEEEECcceeCcCc--------CeeCCCCCCCC
Confidence 457888877766555555666666666 45777766654
No 103
>3vth_A Hydrogenase maturation factor; carbamoyltransfer, maturation of [NIFE]-hydrogenase, carbamoylphosphate, iron, HYPE; HET: APC AP2; 2.00A {Thermoanaerobacter tengcongensis} PDB: 3vti_A
Probab=54.42 E-value=4.4 Score=42.57 Aligned_cols=49 Identities=31% Similarity=0.737 Sum_probs=36.7
Q ss_pred CCCCCccccccCCCCCCC----------eeeCCCCcc--------------------chhhHHHHHhc--------CCCC
Q 017241 314 AAPGVSKCTLCLSNRQDP----------TATPCGHVF--------------------CWNCIMEWCNE--------KPEC 355 (375)
Q Consensus 314 ~~~~~~~C~iC~~~~~~p----------~~~~CgH~f--------------------C~~Ci~~~~~~--------~~~C 355 (375)
..++--.|+-|+.++.+| .+|.||..| |..|..++-.. ...|
T Consensus 107 i~pD~a~C~~Cl~e~~dp~~Rry~ypF~nCt~CGPR~tii~~lPYDR~~TsM~~F~mC~~C~~EY~dp~~RRfhAqp~aC 186 (761)
T 3vth_A 107 VSPDMGVCEDCLRELKDPKDRRYRYPFINCTNCGPRFSIIEDIPYDRAKTSMKVFPMCEKCSREYHDPHDRRFHAQPVAC 186 (761)
T ss_dssp CCCCBCCCHHHHHHHTCTTSTTTTCTTCCBTTBBCSGGGBCSSSCCGGGBGGGGSCCCHHHHHHHTCTTSTTTTCTTCCC
T ss_pred cCCCccccHHHHHHhcCCCccccCCCcccCCCCCcchhhhccCCCCCCCCccccCCCCHHHHHHhcCcccccccCCCCcC
Confidence 556778999999887765 367788655 99999998652 2379
Q ss_pred CCccCCC
Q 017241 356 PLCRAPI 362 (375)
Q Consensus 356 P~Cr~~~ 362 (375)
|.|.-.+
T Consensus 187 ~~CGP~l 193 (761)
T 3vth_A 187 FDCGPSL 193 (761)
T ss_dssp TTTSCCE
T ss_pred CccCCee
Confidence 9997654
No 104
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=52.26 E-value=14 Score=25.61 Aligned_cols=30 Identities=23% Similarity=0.493 Sum_probs=12.9
Q ss_pred CccccccCCCCCCC-eeeCCCCccchhhHHH
Q 017241 318 VSKCTLCLSNRQDP-TATPCGHVFCWNCIME 347 (375)
Q Consensus 318 ~~~C~iC~~~~~~p-~~~~CgH~fC~~Ci~~ 347 (375)
-+.|..|...+... ....-|.+||..|...
T Consensus 31 CF~C~~C~~~L~~~~f~~~~g~~yC~~c~~~ 61 (70)
T 2d8x_A 31 CFRCDLCQEVLADIGFVKNAGRHLCRPCHNR 61 (70)
T ss_dssp TSBCSSSCCBCSSSCCEEETTEEECHHHHHH
T ss_pred CCEeCCCCCcCCCCccEeECCeEECHHHhhh
Confidence 34555554444332 1222344455555443
No 105
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=50.86 E-value=5.3 Score=34.05 Aligned_cols=45 Identities=20% Similarity=0.429 Sum_probs=30.4
Q ss_pred CccccccCCCCCCCeeeCCCCccchhhHHHHHh----cCCCCCCccCCC
Q 017241 318 VSKCTLCLSNRQDPTATPCGHVFCWNCIMEWCN----EKPECPLCRAPI 362 (375)
Q Consensus 318 ~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~----~~~~CP~Cr~~~ 362 (375)
+..|.+|...-.--.+-.|...||..|+..-+. ....||.|+..-
T Consensus 4 ~~~C~~C~~~g~ll~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~~ 52 (184)
T 3o36_A 4 EDWCAVCQNGGELLCCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDLS 52 (184)
T ss_dssp CSSCTTTCCCSSCEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCccccCCCCCeeeecCCCCcccCccccCCCCCCCCCCCEECccccCcc
Confidence 456999986533233446888899999865443 234799997654
No 106
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=49.79 E-value=3.4 Score=36.03 Aligned_cols=46 Identities=20% Similarity=0.362 Sum_probs=30.4
Q ss_pred CCccccccCCCCCCCeeeCCCCccchhhHHHHHh----cCCCCCCccCCC
Q 017241 317 GVSKCTLCLSNRQDPTATPCGHVFCWNCIMEWCN----EKPECPLCRAPI 362 (375)
Q Consensus 317 ~~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~----~~~~CP~Cr~~~ 362 (375)
.+..|.+|...-.--.+-.|...||..|+..-+. ....||.|+..-
T Consensus 6 ~~~~C~~C~~~g~ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~ 55 (207)
T 3u5n_A 6 NEDWCAVCQNGGDLLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDIG 55 (207)
T ss_dssp SCSSBTTTCCCEEEEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCCCCCCCCCCCceEEcCCCCCccCCccCCCCCCCCCCCCEEeCceeCcc
Confidence 3457999986422223346888999999865443 234899997643
No 107
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=48.62 E-value=11 Score=28.32 Aligned_cols=46 Identities=17% Similarity=0.476 Sum_probs=30.8
Q ss_pred CCCccccccCCCCCCCeeeCCCCccchhhHHHHHhc----CCCCCCccCC
Q 017241 316 PGVSKCTLCLSNRQDPTATPCGHVFCWNCIMEWCNE----KPECPLCRAP 361 (375)
Q Consensus 316 ~~~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~~----~~~CP~Cr~~ 361 (375)
..+..|.+|...-.--.+-.|...|+.+|+.+-+.. ...||.|...
T Consensus 23 ~n~~~C~vC~~~g~LL~CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~~ 72 (88)
T 1fp0_A 23 DSATICRVCQKPGDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 72 (88)
T ss_dssp SSSSCCSSSCSSSCCEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCCC
T ss_pred CCCCcCcCcCCCCCEEECCCCCCceecccCCCCCCCCcCCCcCCccccCC
Confidence 345689999875322233468888999999665433 2479999653
No 108
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=47.80 E-value=24 Score=25.17 Aligned_cols=38 Identities=13% Similarity=0.218 Sum_probs=19.2
Q ss_pred ccccccCCCCCCCeeeCCCCccchhhHHHHHhcCCCCCCccCCCCC
Q 017241 319 SKCTLCLSNRQDPTATPCGHVFCWNCIMEWCNEKPECPLCRAPITH 364 (375)
Q Consensus 319 ~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 364 (375)
..|.-|.+.+.......-|..|+..| +.|..|+.++..
T Consensus 16 ~~C~~C~~~I~~~~v~a~~~~~H~~C--------F~C~~C~~~L~~ 53 (79)
T 2cor_A 16 YICQKCHAIIDEQPLIFKNDPYHPDH--------FNCANCGKELTA 53 (79)
T ss_dssp CBCTTTCCBCCSCCCCCSSSCCCTTT--------SBCSSSCCBCCT
T ss_pred CCCccCCCEecceEEEECcceeCCCC--------CEeCCCCCccCC
Confidence 45666665554433334444444444 455555555543
No 109
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=47.56 E-value=32 Score=25.71 Aligned_cols=46 Identities=20% Similarity=0.444 Sum_probs=33.3
Q ss_pred CccccccCCCCCC-----C--eeeCCCCccchhhHHHHHh-cCCCCCCccCCCC
Q 017241 318 VSKCTLCLSNRQD-----P--TATPCGHVFCWNCIMEWCN-EKPECPLCRAPIT 363 (375)
Q Consensus 318 ~~~C~iC~~~~~~-----p--~~~~CgH~fC~~Ci~~~~~-~~~~CP~Cr~~~~ 363 (375)
.-.|.||-+.+-. + .+-.|+-..|..|..--.+ .+..||.|+....
T Consensus 16 ~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYk 69 (93)
T 1weo_A 16 GQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYK 69 (93)
T ss_dssp SCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCC
T ss_pred CCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCccc
Confidence 4689999987531 1 2335888889999965444 5679999988775
No 110
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=46.84 E-value=21 Score=26.15 Aligned_cols=42 Identities=14% Similarity=0.309 Sum_probs=27.3
Q ss_pred CCccccccCCCCCCCeeeCCCCccchhhHHHHHhcCCCCCCccCCCCCCC
Q 017241 317 GVSKCTLCLSNRQDPTATPCGHVFCWNCIMEWCNEKPECPLCRAPITHSS 366 (375)
Q Consensus 317 ~~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~ 366 (375)
....|..|.+.+.......-|..|+..| +.|..|+.++....
T Consensus 24 ~~~~C~~C~~~I~~~~v~a~~~~~H~~C--------F~C~~C~~~L~~~~ 65 (90)
T 2dar_A 24 RTPMCAHCNQVIRGPFLVALGKSWHPEE--------FNCAHCKNTMAYIG 65 (90)
T ss_dssp CCCBBSSSCCBCCSCEEEETTEEECTTT--------CBCSSSCCBCSSSC
T ss_pred CCCCCccCCCEecceEEEECCccccccC--------CccCCCCCCCCCCE
Confidence 3457888877776555555666666666 56777777766443
No 111
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=46.23 E-value=19 Score=34.56 Aligned_cols=45 Identities=22% Similarity=0.558 Sum_probs=32.6
Q ss_pred CCccccccCCCCCCCeee--CCCCccchhhHHHHHh----------cCCCCCCccCC
Q 017241 317 GVSKCTLCLSNRQDPTAT--PCGHVFCWNCIMEWCN----------EKPECPLCRAP 361 (375)
Q Consensus 317 ~~~~C~iC~~~~~~p~~~--~CgH~fC~~Ci~~~~~----------~~~~CP~Cr~~ 361 (375)
.+.-|.+|-+--.--.+- .|...||..||...+- ..-.|-.|.-.
T Consensus 92 ~~~yCr~C~~Gg~l~~Cdn~~C~r~FC~~Ci~~n~g~~~~~~i~~~d~W~Cf~C~p~ 148 (386)
T 2pv0_B 92 YQSYCSICCSGETLLICGNPDCTRCYCFECVDSLVGPGTSGKVHAMSNWVCYLCLPS 148 (386)
T ss_dssp SBCSCTTTCCCSSCEECCSTTCCCEECHHHHHHHTCTTHHHHHHHCSSCCCTTTSSC
T ss_pred CcccceEcCCCCeEEEeCCCCCCcchHHHHHHHhcChhHHHHhhccCCceEEEcCCc
Confidence 457899998865433444 7999999999998762 23589888543
No 112
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=44.30 E-value=6.4 Score=30.50 Aligned_cols=29 Identities=28% Similarity=0.560 Sum_probs=18.4
Q ss_pred CCCeeeCCCCccchhhHHHHHhcCCCCCCccCCC
Q 017241 329 QDPTATPCGHVFCWNCIMEWCNEKPECPLCRAPI 362 (375)
Q Consensus 329 ~~p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~ 362 (375)
..+.+..||+.|+. -+.....||.|+..-
T Consensus 66 ~p~~C~~CG~~F~~-----~~~kPsrCP~CkSe~ 94 (105)
T 2gmg_A 66 KPAQCRKCGFVFKA-----EINIPSRCPKCKSEW 94 (105)
T ss_dssp CCCBBTTTCCBCCC-----CSSCCSSCSSSCCCC
T ss_pred ECcChhhCcCeecc-----cCCCCCCCcCCCCCc
Confidence 34566679999831 122336899997653
No 113
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=43.36 E-value=20 Score=29.29 Aligned_cols=45 Identities=20% Similarity=0.475 Sum_probs=31.7
Q ss_pred CCCccccccCCCCCCCeeeCCCCccchhhHHHHHh-----------cCCCCCCccC
Q 017241 316 PGVSKCTLCLSNRQDPTATPCGHVFCWNCIMEWCN-----------EKPECPLCRA 360 (375)
Q Consensus 316 ~~~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~-----------~~~~CP~Cr~ 360 (375)
..+..|.+|.+--.--..-.|-.+||..|+..-+. ....||.|..
T Consensus 61 g~~d~C~vC~~GG~LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~ 116 (142)
T 2lbm_A 61 GMDEQCRWCAEGGNLICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHP 116 (142)
T ss_dssp SCBCSCSSSCCCSSEEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCC
T ss_pred CCCCeecccCCCCcEEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccC
Confidence 34578999987543233447889999999986442 2358999964
No 114
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=43.11 E-value=35 Score=23.54 Aligned_cols=11 Identities=18% Similarity=0.410 Sum_probs=4.8
Q ss_pred CccccccCCCC
Q 017241 318 VSKCTLCLSNR 328 (375)
Q Consensus 318 ~~~C~iC~~~~ 328 (375)
-+.|..|...+
T Consensus 35 CF~C~~C~~~L 45 (72)
T 1x4l_A 35 CFNCKKCSLSL 45 (72)
T ss_dssp TCBCSSSCCBC
T ss_pred cCEeccCCCcC
Confidence 34444444433
No 115
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=42.61 E-value=17 Score=28.67 Aligned_cols=50 Identities=16% Similarity=0.289 Sum_probs=35.3
Q ss_pred CCCccccccCCCCC---CCeeeCCCCccchhhHHHHHhcCCCCCCccCCCCCC
Q 017241 316 PGVSKCTLCLSNRQ---DPTATPCGHVFCWNCIMEWCNEKPECPLCRAPITHS 365 (375)
Q Consensus 316 ~~~~~C~iC~~~~~---~p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 365 (375)
.+-+.|..|...+. .+....=|..||..|..........|..|.+++...
T Consensus 27 ~~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~~y~~~~~~~~~C~~C~~~I~~~ 79 (131)
T 2xjy_A 27 EDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCDKRIRAY 79 (131)
T ss_dssp TTTCBCTTTCCBCSSTTCCEEEETTEEECHHHHHHHHCCCEECTTTCCEECTT
T ss_pred HHHcccCcCCCccccCCCeEEEECCEEeecCchhhhCCCccChhhcCCccCcc
Confidence 35688888988774 244556778899988876554434788888888653
No 116
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=42.07 E-value=19 Score=25.69 Aligned_cols=40 Identities=20% Similarity=0.554 Sum_probs=24.6
Q ss_pred ccccccCCCCCCCeeeCCCCccchhhHHHHHhcCCCCCCccCCCCCCC
Q 017241 319 SKCTLCLSNRQDPTATPCGHVFCWNCIMEWCNEKPECPLCRAPITHSS 366 (375)
Q Consensus 319 ~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~ 366 (375)
..|+.|.+.+.......-+..|+..| +.|-.|++++...+
T Consensus 16 ~~C~~C~~~I~~~~v~a~~~~wH~~C--------F~C~~C~~~L~~~~ 55 (81)
T 1v6g_A 16 TRCFSCDQFIEGEVVSALGKTYHPDC--------FVCAVCRLPFPPGD 55 (81)
T ss_dssp CBCTTTCCBCCSCCEEETTEEECTTT--------SSCSSSCCCCCSSS
T ss_pred CcCccccCEeccceEEECCceeCccC--------CccccCCCCCCCCC
Confidence 36777777666444445556666665 56777777765433
No 117
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=42.05 E-value=31 Score=24.18 Aligned_cols=32 Identities=13% Similarity=0.234 Sum_probs=18.9
Q ss_pred CCCccccccCCCCC--CCeeeCCCCccchhhHHH
Q 017241 316 PGVSKCTLCLSNRQ--DPTATPCGHVFCWNCIME 347 (375)
Q Consensus 316 ~~~~~C~iC~~~~~--~p~~~~CgH~fC~~Ci~~ 347 (375)
.+-+.|..|...+. ......=|.+||..|...
T Consensus 29 ~~CF~C~~C~~~L~~~~~f~~~~~~~yC~~C~~~ 62 (73)
T 1wig_A 29 PSCALCVRCGQMFAEGEEMYLQGSSIWHPACRQA 62 (73)
T ss_dssp TTTSCCSSSCCCCCSSCCCEEETTEEECTTHHHH
T ss_pred CCcCEeCCCCCCCCCCCeeEeeCCEEEChHHChH
Confidence 34567777777665 233334556677777654
No 118
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=41.64 E-value=25 Score=24.31 Aligned_cols=29 Identities=17% Similarity=0.342 Sum_probs=13.5
Q ss_pred CccccccCCCCCC-CeeeCCCCccchhhHH
Q 017241 318 VSKCTLCLSNRQD-PTATPCGHVFCWNCIM 346 (375)
Q Consensus 318 ~~~C~iC~~~~~~-p~~~~CgH~fC~~Ci~ 346 (375)
-+.|..|...+.. +....=|.+||..|..
T Consensus 33 CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~ 62 (72)
T 1wyh_A 33 CFLCSGCEQPLGSRSFVPDKGAHYCVPCYE 62 (72)
T ss_dssp TCBCTTTCCBTTTSCEEEETTEEEEHHHHH
T ss_pred cCeECCCCCcCCCCccCCcCCeEECHHHHH
Confidence 4555555554443 2222344455555543
No 119
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=41.49 E-value=19 Score=24.53 Aligned_cols=36 Identities=17% Similarity=0.386 Sum_probs=16.9
Q ss_pred cccccCCCCCCCeeeCCCCccchhhHHHHHhcCCCCCCccCCCC
Q 017241 320 KCTLCLSNRQDPTATPCGHVFCWNCIMEWCNEKPECPLCRAPIT 363 (375)
Q Consensus 320 ~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 363 (375)
.|+.|.+.+.......-|..|+..| +.|..|+.++.
T Consensus 7 ~C~~C~~~I~~~~~~a~~~~~H~~C--------F~C~~C~~~L~ 42 (66)
T 1nyp_A 7 ICGACRRPIEGRVVNAMGKQWHVEH--------FVCAKCEKPFL 42 (66)
T ss_dssp EETTTTEECCSCEECCTTSBEETTT--------CBCTTTCCBCS
T ss_pred CCcccCCEecceEEEECccccccCc--------CEECCCCCCCC
Confidence 4555555444333333444444444 34555555544
No 120
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=40.86 E-value=28 Score=23.88 Aligned_cols=31 Identities=13% Similarity=0.372 Sum_probs=15.5
Q ss_pred CCccccccCCCCCCC-eeeCCCCccchhhHHH
Q 017241 317 GVSKCTLCLSNRQDP-TATPCGHVFCWNCIME 347 (375)
Q Consensus 317 ~~~~C~iC~~~~~~p-~~~~CgH~fC~~Ci~~ 347 (375)
+-+.|..|...+... ....=|.+||..|...
T Consensus 30 ~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~ 61 (69)
T 2cur_A 30 DCFVCVTCSKKLAGQRFTAVEDQYYCVDCYKN 61 (69)
T ss_dssp TTTBCTTTCCBCTTSCEEECSSCEEEHHHHHH
T ss_pred CcCEECCCCCCCCCCccEeECCEEECHHHhHH
Confidence 345566665554432 2233455566666544
No 121
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=40.50 E-value=6.9 Score=29.26 Aligned_cols=52 Identities=13% Similarity=0.274 Sum_probs=32.6
Q ss_pred CCCccccccCCCCC-C--C--eeeCCCCccchhhHHHHHh--cCCCCCCccCCCCCCCc
Q 017241 316 PGVSKCTLCLSNRQ-D--P--TATPCGHVFCWNCIMEWCN--EKPECPLCRAPITHSSL 367 (375)
Q Consensus 316 ~~~~~C~iC~~~~~-~--p--~~~~CgH~fC~~Ci~~~~~--~~~~CP~Cr~~~~~~~~ 367 (375)
.++..|.+|...-. + . .+-.|.-.|+..|+..-.. ....||.|......+.+
T Consensus 23 ~~~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p~~vP~g~W~C~~C~~~~~~~~~ 81 (88)
T 2l43_A 23 DEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQSRARPAL 81 (88)
T ss_dssp CCCCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTCSSCCSSCCCCHHHHHHTTSCC-
T ss_pred CCCCcCCcCCCCCCCCCCCEEECCCCCchhhcccCCCCccCCCceECccccCccchhhh
Confidence 45678999987531 1 1 1236888899999864322 23579999766554443
No 122
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=40.24 E-value=3.6 Score=27.91 Aligned_cols=44 Identities=20% Similarity=0.454 Sum_probs=27.3
Q ss_pred CCCccccccCCCCCCCeeeCCCCccchhhHHHHHhc----CCCCCCcc
Q 017241 316 PGVSKCTLCLSNRQDPTATPCGHVFCWNCIMEWCNE----KPECPLCR 359 (375)
Q Consensus 316 ~~~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~~----~~~CP~Cr 359 (375)
..+..|.+|...-.--..-.|...|+..|+..-+.. .-.||.|.
T Consensus 7 ~~~~~C~vC~~~g~ll~Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~ 54 (56)
T 2yql_A 7 GHEDFCSVCRKSGQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQ 54 (56)
T ss_dssp SSCCSCSSSCCSSCCEECSSSSCEECSSSSSSCCCSCCCSSCCCHHHH
T ss_pred CCCCCCccCCCCCeEEEcCCCCcceECccCCCCcCCCCCCceEChhhh
Confidence 345679999875322233468888999998643322 23577774
No 123
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=39.87 E-value=21 Score=28.74 Aligned_cols=44 Identities=23% Similarity=0.523 Sum_probs=30.1
Q ss_pred CCccccccCCCCCCCeeeCCCCccchhhHHHHH-----------hcCCCCCCccC
Q 017241 317 GVSKCTLCLSNRQDPTATPCGHVFCWNCIMEWC-----------NEKPECPLCRA 360 (375)
Q Consensus 317 ~~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~-----------~~~~~CP~Cr~ 360 (375)
.+..|.+|.+--.-...-.|-..||..||..-+ ...-.|+.|..
T Consensus 56 ~~~~C~vC~dGG~LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~ 110 (129)
T 3ql9_A 56 MDEQCRWCAEGGNLICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHP 110 (129)
T ss_dssp CBSSCTTTCCCSEEEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCC
T ss_pred CCCcCeecCCCCeeEecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCC
Confidence 345699998753323334688999999998642 12358999954
No 124
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=39.85 E-value=37 Score=23.20 Aligned_cols=31 Identities=19% Similarity=0.472 Sum_probs=15.8
Q ss_pred CCccccccCCCCCC-CeeeCCCCccchhhHHH
Q 017241 317 GVSKCTLCLSNRQD-PTATPCGHVFCWNCIME 347 (375)
Q Consensus 317 ~~~~C~iC~~~~~~-p~~~~CgH~fC~~Ci~~ 347 (375)
+-+.|..|...+.. +....=|.+||..|...
T Consensus 30 ~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~ 61 (70)
T 2d8z_A 30 ECFVCTACRKQLSGQRFTARDDFAYCLNCFCD 61 (70)
T ss_dssp TTSBCSSSCCBCTTSCCEESSSSEECHHHHHH
T ss_pred CCCccCCCCCcCCcCceEeeCCeEECHHHHHH
Confidence 34566666655543 22233455666666543
No 125
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=39.67 E-value=35 Score=28.21 Aligned_cols=49 Identities=16% Similarity=0.368 Sum_probs=34.9
Q ss_pred CCCccccccCCCCCCCeeeCCCCccchhhHHHHHhcCCCCCCccCCCCCCC
Q 017241 316 PGVSKCTLCLSNRQDPTATPCGHVFCWNCIMEWCNEKPECPLCRAPITHSS 366 (375)
Q Consensus 316 ~~~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~ 366 (375)
.+-+.|..|...+.......=|..||..|..... .+.|..|.+.+...+
T Consensus 31 ~~CF~C~~C~~~L~~~~f~~~g~~yC~~~y~~~f--~~~C~~C~~~I~~~~ 79 (169)
T 2rgt_A 31 SKCLKCSDCHVPLAERCFSRGESVYCKDDFFKRF--GTKCAACQLGIPPTQ 79 (169)
T ss_dssp TTTSBCTTTCCBCCSCCEESSSCEECHHHHHHHH--SCBCTTTCCBCCTTS
T ss_pred cccCccCCCCCcCCCCCcccCCeeeecccccccc--cccccccccccCCCc
Confidence 3578899998877654445567889988876543 467888888776544
No 126
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=39.43 E-value=26 Score=24.66 Aligned_cols=36 Identities=14% Similarity=0.323 Sum_probs=16.7
Q ss_pred cccccCCCCCC----CeeeCCCCccchhhHHHHHhcCCCCCCccCCCC
Q 017241 320 KCTLCLSNRQD----PTATPCGHVFCWNCIMEWCNEKPECPLCRAPIT 363 (375)
Q Consensus 320 ~C~iC~~~~~~----p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 363 (375)
.|+.|.+.+.. .....-+..|+..| +.|..|+.++.
T Consensus 7 ~C~~C~~~I~~~g~~~~~~a~~~~wH~~C--------F~C~~C~~~L~ 46 (76)
T 1x68_A 7 GCVACSKPISGLTGAKFICFQDSQWHSEC--------FNCGKCSVSLV 46 (76)
T ss_dssp CCTTTCCCCCTTTTCCEEEETTEEEEGGG--------CBCTTTCCBCS
T ss_pred CCccCCCcccCCCCceeEEECCcccCccc--------CChhhCCCcCC
Confidence 45555555443 23333444444444 34555555444
No 127
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=38.52 E-value=33 Score=24.24 Aligned_cols=27 Identities=19% Similarity=0.416 Sum_probs=10.7
Q ss_pred ccccccCCCCCC-CeeeCCCCccchhhH
Q 017241 319 SKCTLCLSNRQD-PTATPCGHVFCWNCI 345 (375)
Q Consensus 319 ~~C~iC~~~~~~-p~~~~CgH~fC~~Ci 345 (375)
+.|..|...+.. .....=|.+||..|.
T Consensus 42 F~C~~C~~~L~~~~~~~~~~~~yC~~cy 69 (80)
T 2cuq_A 42 LVCTGCQTPLAGQQFTSRDEDPYCVACF 69 (80)
T ss_dssp CBCSSSCCBCTTCCEEECSSSEEEHHHH
T ss_pred CCcccCCCcCCCCeeEeECCEEECHHHH
Confidence 444444444332 122233344444444
No 128
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=37.72 E-value=26 Score=24.64 Aligned_cols=37 Identities=24% Similarity=0.493 Sum_probs=16.3
Q ss_pred ccccccCCCCC-CCeeeCCCCccchhhHHHHHhcCCCCCCccCCCC
Q 017241 319 SKCTLCLSNRQ-DPTATPCGHVFCWNCIMEWCNEKPECPLCRAPIT 363 (375)
Q Consensus 319 ~~C~iC~~~~~-~p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 363 (375)
..|+.|.+.+. ......-+..|+..| +.|..|+.++.
T Consensus 10 ~~C~~C~~~I~~~~~v~a~~~~~H~~C--------F~C~~C~~~L~ 47 (76)
T 2cu8_A 10 SKCPKCDKTVYFAEKVSSLGKDWHKFC--------LKCERCSKTLT 47 (76)
T ss_dssp CBCTTTCCBCCTTTEEEETTEEEETTT--------CBCSSSCCBCC
T ss_pred CCCcCCCCEeECCeEEEECCeEeeCCC--------CCCCCCCCccC
Confidence 34555555444 222233344444444 34555555444
No 129
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=37.69 E-value=35 Score=24.20 Aligned_cols=37 Identities=27% Similarity=0.549 Sum_probs=17.7
Q ss_pred cccccCCCCC--CCeeeCCCCccchhhHHHHHhcCCCCCCccCCCCC
Q 017241 320 KCTLCLSNRQ--DPTATPCGHVFCWNCIMEWCNEKPECPLCRAPITH 364 (375)
Q Consensus 320 ~C~iC~~~~~--~p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 364 (375)
.|..|.+.+. +.+...-+..|+..| +.|-.|++++..
T Consensus 17 ~C~~C~~~I~~~~~~~~a~~~~~H~~C--------F~C~~C~~~L~~ 55 (82)
T 1x63_A 17 KCKGCFKAIVAGDQNVEYKGTVWHKDC--------FTCSNCKQVIGT 55 (82)
T ss_dssp BCSSSCCBCCSSSCEEECSSCEEETTT--------CCCSSSCCCCTT
T ss_pred cCccCCcccccCceEEEECcccccccc--------CchhhCCCccCC
Confidence 5555555544 223333444444444 345555555543
No 130
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=36.41 E-value=50 Score=23.63 Aligned_cols=42 Identities=24% Similarity=0.443 Sum_probs=25.1
Q ss_pred CCccccccCCCCCC-CeeeCCCCccchhhHHHHHhcCCCCCCccCCCCCCC
Q 017241 317 GVSKCTLCLSNRQD-PTATPCGHVFCWNCIMEWCNEKPECPLCRAPITHSS 366 (375)
Q Consensus 317 ~~~~C~iC~~~~~~-p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~ 366 (375)
....|..|.+.+.. .....-+..|+..| +.|-.|+.++....
T Consensus 14 ~~~~C~~C~~~I~~~e~v~a~~~~wH~~C--------F~C~~C~~~L~~~~ 56 (82)
T 2co8_A 14 AGDLCALCGEHLYVLERLCVNGHFFHRSC--------FRCHTCEATLWPGG 56 (82)
T ss_dssp SSCBCSSSCCBCCTTTBCCBTTBCCBTTT--------CBCSSSCCBCCTTS
T ss_pred CCCCCcccCCCcccceEEEECCCeeCCCc--------CEEcCCCCCcCCCc
Confidence 34678888876643 23334455666666 56777777665443
No 131
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=36.23 E-value=3.5 Score=30.27 Aligned_cols=16 Identities=31% Similarity=0.945 Sum_probs=13.7
Q ss_pred CCCCccchhhHHHHHh
Q 017241 335 PCGHVFCWNCIMEWCN 350 (375)
Q Consensus 335 ~CgH~fC~~Ci~~~~~ 350 (375)
.||+.||..|...|..
T Consensus 55 ~C~~~FC~~C~~~wH~ 70 (80)
T 2jmo_A 55 GCGFAFCRECKEAYHE 70 (80)
T ss_dssp CCSCCEETTTTEECCS
T ss_pred CCCCeeccccCccccC
Confidence 6999999999887754
No 132
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=35.40 E-value=32 Score=23.65 Aligned_cols=29 Identities=17% Similarity=0.298 Sum_probs=12.7
Q ss_pred CccccccCCCCCCC-eeeCCCCccchhhHH
Q 017241 318 VSKCTLCLSNRQDP-TATPCGHVFCWNCIM 346 (375)
Q Consensus 318 ~~~C~iC~~~~~~p-~~~~CgH~fC~~Ci~ 346 (375)
-+.|..|...+... ....=|..||..|..
T Consensus 33 CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~ 62 (72)
T 1x4k_A 33 CFICHRCQQPIGTKSFIPKDNQNFCVPCYE 62 (72)
T ss_dssp TTCCSSSCCCCCSSSEEEETTEEEEHHHHH
T ss_pred CCcccccCCccCCCccCccCCeEECHHHHh
Confidence 34555555444332 222234445555543
No 133
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=34.97 E-value=53 Score=22.51 Aligned_cols=33 Identities=15% Similarity=0.358 Sum_probs=18.9
Q ss_pred CCccccccCCCCCCC-eeeCCCCccchhhHHHHH
Q 017241 317 GVSKCTLCLSNRQDP-TATPCGHVFCWNCIMEWC 349 (375)
Q Consensus 317 ~~~~C~iC~~~~~~p-~~~~CgH~fC~~Ci~~~~ 349 (375)
+-+.|..|...+... ....=|..||..|..+.+
T Consensus 32 ~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~~ 65 (72)
T 1x61_A 32 GCFVCSTCRAQLRGQHFYAVERRAYCEGCYVATL 65 (72)
T ss_dssp TTCBCSSSCCBCTTSCEEESSSCEEEHHHHHHHH
T ss_pred cCCcccccCCcCCcCcCEeeCCeEECHHHHHHHH
Confidence 456666676665432 334456667777765544
No 134
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=34.70 E-value=15 Score=28.11 Aligned_cols=11 Identities=45% Similarity=1.467 Sum_probs=9.6
Q ss_pred cchhhHHHHHh
Q 017241 340 FCWNCIMEWCN 350 (375)
Q Consensus 340 fC~~Ci~~~~~ 350 (375)
||..|+..|..
T Consensus 43 FCRNCLskWy~ 53 (105)
T 2o35_A 43 FCRNCLSNWYR 53 (105)
T ss_dssp CCHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 89999999975
No 135
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=34.70 E-value=15 Score=28.06 Aligned_cols=11 Identities=45% Similarity=1.392 Sum_probs=9.7
Q ss_pred cchhhHHHHHh
Q 017241 340 FCWNCIMEWCN 350 (375)
Q Consensus 340 fC~~Ci~~~~~ 350 (375)
||..|+..|..
T Consensus 42 FCRNCLskWy~ 52 (104)
T 3fyb_A 42 FCRNCLAKWLM 52 (104)
T ss_dssp CCHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 89999999976
No 136
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=34.62 E-value=6.7 Score=27.50 Aligned_cols=46 Identities=15% Similarity=0.375 Sum_probs=29.1
Q ss_pred CCCccccccCCCCCCCeeeCCCCccchhhHHHHHh----cCCCCCCccCC
Q 017241 316 PGVSKCTLCLSNRQDPTATPCGHVFCWNCIMEWCN----EKPECPLCRAP 361 (375)
Q Consensus 316 ~~~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~----~~~~CP~Cr~~ 361 (375)
..+..|.+|...-.--..-.|...|+..|+..-+. ..-.||.|...
T Consensus 6 ~~~~~C~vC~~~g~ll~CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~~ 55 (66)
T 1xwh_A 6 KNEDECAVCRDGGELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQA 55 (66)
T ss_dssp SCCCSBSSSSCCSSCEECSSCCCEECTTTSSSCCSSCCSSCCCCHHHHHT
T ss_pred CCCCCCccCCCCCCEEEcCCCChhhcccccCCCcCcCCCCCeECccccCc
Confidence 34678999987532223346888899999864332 22478888543
No 137
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=34.12 E-value=11 Score=32.18 Aligned_cols=49 Identities=24% Similarity=0.506 Sum_probs=33.6
Q ss_pred CCccccccCCCCCC---CeeeCCCCccchhhHHHHHhcCCCCCCccCCCCCC
Q 017241 317 GVSKCTLCLSNRQD---PTATPCGHVFCWNCIMEWCNEKPECPLCRAPITHS 365 (375)
Q Consensus 317 ~~~~C~iC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 365 (375)
+-+.|..|...+.. +....=|..||..|.......+..|..|.+++...
T Consensus 31 ~CF~C~~C~~~L~~~g~~~~~~~g~~yC~~cy~~~~~~~~~C~~C~~~I~~~ 82 (188)
T 1rut_X 31 RCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNSGACSACGQSIPAS 82 (188)
T ss_dssp GGCBCTTTCCBHHHHCSEEEEETTEEECHHHHHHHHSCCEECTTTCCEECTT
T ss_pred cCcccCCCCcccccCCceEEEeCCccccccccccccccCCccccCCCccccC
Confidence 46788888877653 44455678888888766544333688888887653
No 138
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=33.87 E-value=31 Score=24.46 Aligned_cols=30 Identities=23% Similarity=0.452 Sum_probs=13.0
Q ss_pred CccccccCCCCCC--Cee-eCCCCccchhhHHH
Q 017241 318 VSKCTLCLSNRQD--PTA-TPCGHVFCWNCIME 347 (375)
Q Consensus 318 ~~~C~iC~~~~~~--p~~-~~CgH~fC~~Ci~~ 347 (375)
-+.|..|...+.. ... ..=|..||..|...
T Consensus 41 CF~C~~C~~~L~~g~~f~~~~~~~~~C~~c~~~ 73 (81)
T 1x6a_A 41 CFACMSCKVIIEDGDAYALVQHATLYCGKCHNE 73 (81)
T ss_dssp SCBCTTTCCBCCTTSCEEECSSSCEEEHHHHHH
T ss_pred cCCccCCCCccCCCCcEEEeeCCEEECHHHHHH
Confidence 4455555554432 222 13344555555443
No 139
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=33.43 E-value=30 Score=24.44 Aligned_cols=11 Identities=18% Similarity=0.443 Sum_probs=4.8
Q ss_pred CccccccCCCC
Q 017241 318 VSKCTLCLSNR 328 (375)
Q Consensus 318 ~~~C~iC~~~~ 328 (375)
-+.|..|...+
T Consensus 41 CF~C~~C~~~L 51 (80)
T 1x3h_A 41 CFVCGDCFTSF 51 (80)
T ss_dssp TCBCSSSCCBS
T ss_pred cCChhhCCCCC
Confidence 34444444443
No 140
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=33.00 E-value=40 Score=28.22 Aligned_cols=48 Identities=17% Similarity=0.365 Sum_probs=32.2
Q ss_pred CCccccccCCCCCCCeeeCCCCccchhhHHHHHhcCCCCCCccCCCCCCC
Q 017241 317 GVSKCTLCLSNRQDPTATPCGHVFCWNCIMEWCNEKPECPLCRAPITHSS 366 (375)
Q Consensus 317 ~~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~ 366 (375)
+-+.|..|...+.......=|..||..|... .-.+.|..|.+++...+
T Consensus 86 ~CF~C~~C~~~L~~~~f~~~g~~yC~~~y~~--~f~~kC~~C~~~I~~~~ 133 (182)
T 2jtn_A 86 KCLKCSDCHVPLAERCFSRGESVYCKDDFFK--RFGTKCAACQLGIPPTQ 133 (182)
T ss_dssp STTSCTTTCCCCSSCCEEETTEEECHHHHHH--TTSCCCTTTCCCCCSSC
T ss_pred ccCccCCCCCccCCCceeECCEeeecCcccc--ccccccccCCCccCCCc
Confidence 5677888877766543444567788888654 23468888888876543
No 141
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=32.82 E-value=13 Score=30.08 Aligned_cols=30 Identities=27% Similarity=0.645 Sum_probs=21.2
Q ss_pred CCccccccCCCCC---C--CeeeCCCCccchhhHH
Q 017241 317 GVSKCTLCLSNRQ---D--PTATPCGHVFCWNCIM 346 (375)
Q Consensus 317 ~~~~C~iC~~~~~---~--p~~~~CgH~fC~~Ci~ 346 (375)
+...|.+|...+. + ..+..|.|.+|..|-.
T Consensus 54 ~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~ 88 (134)
T 1zbd_B 54 GVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGV 88 (134)
T ss_dssp SSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEE
T ss_pred CCccccccCCCcccccCCCCCCCCCCcccccccCC
Confidence 3578999999873 1 1345688888888853
No 142
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=32.36 E-value=45 Score=23.82 Aligned_cols=38 Identities=18% Similarity=0.432 Sum_probs=21.2
Q ss_pred CccccccCCCCCC-CeeeCCCCccchhhHHHHHhcCCCCCCccCCCC
Q 017241 318 VSKCTLCLSNRQD-PTATPCGHVFCWNCIMEWCNEKPECPLCRAPIT 363 (375)
Q Consensus 318 ~~~C~iC~~~~~~-p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 363 (375)
...|.-|.+.+.. .....-+..|+..| +.|..|+.++.
T Consensus 15 ~~~C~~C~~~I~~~~~v~a~~~~wH~~C--------F~C~~C~~~L~ 53 (80)
T 2dj7_A 15 PSHCAGCKEEIKHGQSLLALDKQWHVSC--------FKCQTCSVILT 53 (80)
T ss_dssp CSCCTTTCCCCSSSCCEEETTEEECTTT--------CBCSSSCCBCS
T ss_pred CCCCcCcCCeeCCCeEEEECCccccccc--------CCcCcCCCCcC
Confidence 4567777766542 23333455555555 45666666665
No 143
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=32.14 E-value=33 Score=28.58 Aligned_cols=44 Identities=25% Similarity=0.549 Sum_probs=30.0
Q ss_pred CCccccccCCCCCCCeee--CCCCccchhhHHHHHhc----------CCCCCCccC
Q 017241 317 GVSKCTLCLSNRQDPTAT--PCGHVFCWNCIMEWCNE----------KPECPLCRA 360 (375)
Q Consensus 317 ~~~~C~iC~~~~~~p~~~--~CgH~fC~~Ci~~~~~~----------~~~CP~Cr~ 360 (375)
-+.-|.+|-+--.--..- +|...||..||...+-. .-.|-+|.-
T Consensus 78 ~~~yC~wC~~Gg~l~~Cdn~~C~r~FC~~CI~~nvG~~~~~~i~~~d~W~Cy~C~P 133 (159)
T 3a1b_A 78 YQSYCTICCGGREVLMCGNNNCCRCFCVECVDLLVGPGAAQAAIKEDPWNCYMCGH 133 (159)
T ss_dssp SBSSCTTTSCCSEEEECSSTTTCCEEEHHHHHHHTCTTHHHHHHTSSSCCCTTTCS
T ss_pred CcceeeEecCCCeEEeeCCCCCCCchhHHHHHHhcCHhHHHHHhccCCCEEEecCC
Confidence 356899998753222222 58889999999887632 237988853
No 144
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=31.95 E-value=74 Score=23.06 Aligned_cols=32 Identities=16% Similarity=0.369 Sum_probs=19.3
Q ss_pred CCccccccCCCCCCC-eeeCCCCccchhhHHHH
Q 017241 317 GVSKCTLCLSNRQDP-TATPCGHVFCWNCIMEW 348 (375)
Q Consensus 317 ~~~~C~iC~~~~~~p-~~~~CgH~fC~~Ci~~~ 348 (375)
+-+.|..|...+... ....=|.+||..|....
T Consensus 41 ~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~~ 73 (91)
T 2d8y_A 41 SCFRCSYCNNKLSLGTYASLHGRIYCKPHFNQL 73 (91)
T ss_dssp TTCBCTTTCCBCCTTTCCCSSSCCCCHHHHHHH
T ss_pred CCCeeCCCCCCCCCCCcEeECCEEECHHHHHHH
Confidence 456777777665542 33345667777776543
No 145
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=31.93 E-value=24 Score=22.95 Aligned_cols=41 Identities=24% Similarity=0.671 Sum_probs=25.3
Q ss_pred cccccCCCCCCC---eeeCCCCccchhhHHHHHhc----CCCCCCccC
Q 017241 320 KCTLCLSNRQDP---TATPCGHVFCWNCIMEWCNE----KPECPLCRA 360 (375)
Q Consensus 320 ~C~iC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~----~~~CP~Cr~ 360 (375)
.|.+|...-... ..-.|...|+..|+..-+.. .-.||.|..
T Consensus 2 ~C~vC~~~~~~~~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKKGEDDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSSCCSCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCCCCCCCCCCCCEEECCCCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence 477787542211 12368888999999653332 247999864
No 146
>3c5k_A HD6, histone deacetylase 6; HDAC6, zinc finger, actin-binding, chromatin regulator, cytoplasm, hydrolase, metal-binding, nucleus, phosphoprotein; 1.55A {Homo sapiens} PDB: 3gv4_A 3phd_A
Probab=31.60 E-value=18 Score=28.08 Aligned_cols=26 Identities=19% Similarity=0.473 Sum_probs=20.8
Q ss_pred CccccccCCCCCCCeeeCCCCccchh
Q 017241 318 VSKCTLCLSNRQDPTATPCGHVFCWN 343 (375)
Q Consensus 318 ~~~C~iC~~~~~~p~~~~CgH~fC~~ 343 (375)
...|..|...-..-+++.|||++|.+
T Consensus 24 ~~~C~~C~~~~~~W~CL~CG~vgCgr 49 (109)
T 3c5k_A 24 TQPCGDCGTIQENWVCLSCYQVYCGR 49 (109)
T ss_dssp TCCCTTTCCCSSEEEETTTCCEEECT
T ss_pred CCcCccccCCCCeeeeeecCccccCC
Confidence 46799998876556789999999953
No 147
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=31.11 E-value=32 Score=24.48 Aligned_cols=12 Identities=17% Similarity=0.531 Sum_probs=5.6
Q ss_pred CccccccCCCCC
Q 017241 318 VSKCTLCLSNRQ 329 (375)
Q Consensus 318 ~~~C~iC~~~~~ 329 (375)
-+.|..|...+.
T Consensus 41 CF~C~~C~~~L~ 52 (81)
T 2dlo_A 41 CFTCVVCHRGLD 52 (81)
T ss_dssp TCBCSSSCCBCT
T ss_pred hcCcccCCCccC
Confidence 344555544443
No 148
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=29.66 E-value=44 Score=25.95 Aligned_cols=47 Identities=17% Similarity=0.209 Sum_probs=34.7
Q ss_pred CCccccccCCCCCCC-eeeCCCCccchhhHHHHHhcCCCCCCccCCCCCC
Q 017241 317 GVSKCTLCLSNRQDP-TATPCGHVFCWNCIMEWCNEKPECPLCRAPITHS 365 (375)
Q Consensus 317 ~~~~C~iC~~~~~~p-~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 365 (375)
+-+.|..|...+... ....-|..||..|.... ..+.|..|.+++...
T Consensus 29 ~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~--~~~~C~~C~~~I~~~ 76 (126)
T 2xqn_T 29 KHFCCFDCDSILAGEIYVMVNDKPVCKPCYVKN--HAVVCQGCHNAIDPE 76 (126)
T ss_dssp GGSBCTTTCCBCTTSEEEEETTEEEEHHHHHHH--SCCBCTTTCSBCCTT
T ss_pred CCCCcCCCCCCCCcCEEEeECCEEechHHhCcC--cCccCcccCCcCCcC
Confidence 468899998877653 34557788999887543 457899999988853
No 149
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=29.16 E-value=9 Score=26.20 Aligned_cols=44 Identities=20% Similarity=0.468 Sum_probs=26.8
Q ss_pred CccccccCCCCCCCeeeCCCCccchhhHHHHHh----cCCCCCCccCC
Q 017241 318 VSKCTLCLSNRQDPTATPCGHVFCWNCIMEWCN----EKPECPLCRAP 361 (375)
Q Consensus 318 ~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~----~~~~CP~Cr~~ 361 (375)
+..|.+|...-.--..-.|...|+..|+..-+. ..-.||.|...
T Consensus 5 ~~~C~vC~~~g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~ 52 (60)
T 2puy_A 5 EDFCSVCRKSGQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQDQ 52 (60)
T ss_dssp CSSCTTTCCCSSCEECSSSSCEECGGGSSSCCSSCCCSCCCCHHHHHH
T ss_pred CCCCcCCCCCCcEEEcCCCCcCEECCcCCCCcCCCCCCceEChhccCh
Confidence 467888887422222346888888888864332 22368877543
No 150
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=28.97 E-value=40 Score=23.56 Aligned_cols=39 Identities=18% Similarity=0.409 Sum_probs=25.1
Q ss_pred ccccccCCCCCC-----CeeeCCCCccchhhHHHHHhcCCCCCCccCCCCCC
Q 017241 319 SKCTLCLSNRQD-----PTATPCGHVFCWNCIMEWCNEKPECPLCRAPITHS 365 (375)
Q Consensus 319 ~~C~iC~~~~~~-----p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 365 (375)
..|+.|.+.+.. .....-+..|+..| +.|-.|+.++...
T Consensus 16 ~~C~~C~~~I~~~g~~~~~~~a~~~~~H~~C--------F~C~~C~~~L~~~ 59 (77)
T 2egq_A 16 KKCAGCKNPITGFGKGSSVVAYEGQSWHDYC--------FHCKKCSVNLANK 59 (77)
T ss_dssp CCCSSSCCCCCCCSSCCCEEEETTEEEETTT--------CBCSSSCCBCTTS
T ss_pred ccCcccCCcccCCCCCceeEEECcceeCccc--------CEehhcCCCCCCC
Confidence 478888877664 33444556666666 5677787777644
No 151
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=28.93 E-value=3.5 Score=30.50 Aligned_cols=15 Identities=13% Similarity=0.133 Sum_probs=8.3
Q ss_pred CCCCCccCCCCCCCc
Q 017241 353 PECPLCRAPITHSSL 367 (375)
Q Consensus 353 ~~CP~Cr~~~~~~~~ 367 (375)
.-|+.|..-+..+.+
T Consensus 52 yFC~~C~~LiSkkrv 66 (81)
T 2jrp_A 52 YFCQNGHGLISKKRV 66 (81)
T ss_dssp ECCTTTTCCCCTTSS
T ss_pred eeeccCCCEeecceE
Confidence 455666555555554
No 152
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=28.45 E-value=53 Score=22.85 Aligned_cols=39 Identities=15% Similarity=0.440 Sum_probs=19.5
Q ss_pred CccccccCCCCC--CCeeeCCCCccchhhHHHHHhcCCCCCCccCCCCC
Q 017241 318 VSKCTLCLSNRQ--DPTATPCGHVFCWNCIMEWCNEKPECPLCRAPITH 364 (375)
Q Consensus 318 ~~~C~iC~~~~~--~p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 364 (375)
...|+.|.+.+. ..+...-|..|+..| +.|-.|+.++..
T Consensus 11 ~~~C~~C~~~I~~~~~~~~a~~~~~H~~C--------F~C~~C~~~L~~ 51 (77)
T 1g47_A 11 SATCERCKGGFAPAEKIVNSNGELYHEQC--------FVCAQCFQQFPE 51 (77)
T ss_dssp CCBCSSSCCBCCSTTTCEEETTEEECTTT--------CCCTTTCCCCGG
T ss_pred CCCchhcCCccCCCceEEEeCccEecccc--------CeECCCCCCCCC
Confidence 346666666553 222233444555544 455556555543
No 153
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=28.26 E-value=9 Score=26.63 Aligned_cols=48 Identities=23% Similarity=0.443 Sum_probs=30.4
Q ss_pred CCCccccccCCCCC---CCe--eeCCCCccchhhHHHHH-------hcCCCCCCccCCCC
Q 017241 316 PGVSKCTLCLSNRQ---DPT--ATPCGHVFCWNCIMEWC-------NEKPECPLCRAPIT 363 (375)
Q Consensus 316 ~~~~~C~iC~~~~~---~p~--~~~CgH~fC~~Ci~~~~-------~~~~~CP~Cr~~~~ 363 (375)
.++..|.+|..... +.. .-.|...|+..|+..-+ ...-.|+.|.....
T Consensus 4 ~~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~~~ 63 (66)
T 2yt5_A 4 GSSGVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFATT 63 (66)
T ss_dssp CCCCCBSSSCCCCCBTTBCEEECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHTTS
T ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCChHHHhhhCCCcccccccCCCCCEECCCCcCccc
Confidence 34678999987532 222 23688889999986422 13357888865443
No 154
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=28.07 E-value=19 Score=29.79 Aligned_cols=29 Identities=21% Similarity=0.619 Sum_probs=21.8
Q ss_pred CCccccccCCCCC---C--CeeeCCCCccchhhH
Q 017241 317 GVSKCTLCLSNRQ---D--PTATPCGHVFCWNCI 345 (375)
Q Consensus 317 ~~~~C~iC~~~~~---~--p~~~~CgH~fC~~Ci 345 (375)
++..|.+|...+. + ..+..|.|.+|..|-
T Consensus 67 ~~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~ 100 (153)
T 2zet_C 67 NETHCARCLQPYRLLLNSRRQCLECSLFVCKSCS 100 (153)
T ss_dssp GGTBCTTTCCBGGGCSSCCEECTTTCCEECGGGE
T ss_pred CCccchhhcCccccccCCCCcCCCCCchhhcccc
Confidence 3679999999753 2 245579999999986
No 155
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=28.04 E-value=1.4e+02 Score=22.25 Aligned_cols=44 Identities=23% Similarity=0.469 Sum_probs=26.7
Q ss_pred CCCccccccCCCCCCCeee---C--CC-CccchhhHHHHHh----cCCCCCCccCCCC
Q 017241 316 PGVSKCTLCLSNRQDPTAT---P--CG-HVFCWNCIMEWCN----EKPECPLCRAPIT 363 (375)
Q Consensus 316 ~~~~~C~iC~~~~~~p~~~---~--Cg-H~fC~~Ci~~~~~----~~~~CP~Cr~~~~ 363 (375)
.+..-| +|...... ..+ . |. .-|+..|+. +. ....||.|+..-.
T Consensus 34 ~e~~yC-iC~~~~~g-~MI~CD~~dC~~~WfH~~CVg--l~~~p~g~W~Cp~C~~~~~ 87 (91)
T 1weu_A 34 NEPTYC-LCHQVSYG-EMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQESG 87 (91)
T ss_dssp CCCBCS-TTCCBCCS-CCCCCSCSSCSCCCCCSTTTT--CSSCCCSSCCCTTTCCCCS
T ss_pred CCCcEE-ECCCCCCC-CEeEecCCCCCCCCEecccCC--cCcCCCCCEECcCccCcCC
Confidence 345666 99875332 223 3 54 458999985 22 3458999976543
No 156
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=27.12 E-value=16 Score=25.98 Aligned_cols=48 Identities=19% Similarity=0.472 Sum_probs=30.8
Q ss_pred CCccccccCCCCCCCee---eCCCCccchhhHHHHHh----cCCCCCCccCCCCC
Q 017241 317 GVSKCTLCLSNRQDPTA---TPCGHVFCWNCIMEWCN----EKPECPLCRAPITH 364 (375)
Q Consensus 317 ~~~~C~iC~~~~~~p~~---~~CgH~fC~~Ci~~~~~----~~~~CP~Cr~~~~~ 364 (375)
+...|.+|...-..... -.|..-|+..|+..-.. ....||.|...+..
T Consensus 17 ~~~~C~~C~~~~~~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~~k 71 (75)
T 2k16_A 17 QIWICPGCNKPDDGSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKIKK 71 (75)
T ss_dssp EEECBTTTTBCCSSCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHHCS
T ss_pred CCcCCCCCCCCCCCCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCchhh
Confidence 45679999875432222 35777899999854332 24589999776543
No 157
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=26.87 E-value=9.1 Score=23.33 Aligned_cols=14 Identities=14% Similarity=0.351 Sum_probs=9.0
Q ss_pred CccccccCCCCCCC
Q 017241 318 VSKCTLCLSNRQDP 331 (375)
Q Consensus 318 ~~~C~iC~~~~~~p 331 (375)
.+.||+|+..+.++
T Consensus 5 GFiCP~C~~~l~s~ 18 (34)
T 3mjh_B 5 GFICPQCMKSLGSA 18 (34)
T ss_dssp EEECTTTCCEESSH
T ss_pred ccCCcHHHHHcCCH
Confidence 46777777665543
No 158
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=26.46 E-value=82 Score=24.58 Aligned_cols=39 Identities=18% Similarity=0.404 Sum_probs=29.3
Q ss_pred CCccccccCCCCCCCe-eeCCCCccchhhHHHHHhcCCCCCCccCCCC
Q 017241 317 GVSKCTLCLSNRQDPT-ATPCGHVFCWNCIMEWCNEKPECPLCRAPIT 363 (375)
Q Consensus 317 ~~~~C~iC~~~~~~p~-~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 363 (375)
....|.-|.+.+.... ...-+..|+..| +.|-.|+.++.
T Consensus 60 ~~~~C~~C~~~I~~~~~v~a~~~~wH~~C--------F~C~~C~~~L~ 99 (123)
T 2l4z_A 60 SWKRCAGCGGKIADRFLLYAMDSYWHSRC--------LKCSSCQAQLG 99 (123)
T ss_dssp SCSBBSSSSSBCCSSSEEEETTEEEETTT--------SBCTTTCCBGG
T ss_pred cCCcCcCCCCCcCCcEEEEeCCcEEcccc--------cCcCcCCCccc
Confidence 3568999999877653 455677777777 67888988875
No 159
>2a20_A Regulating synaptic membrane exocytosis protein 2; zinc-finger domain, metal binding protein; NMR {Rattus norvegicus} PDB: 2cjs_C
Probab=26.41 E-value=24 Score=24.22 Aligned_cols=37 Identities=27% Similarity=0.758 Sum_probs=22.0
Q ss_pred CCCccccccCCCCCCCeeeCCCCccchhhHHHHHhcCCCCCCccCCC
Q 017241 316 PGVSKCTLCLSNRQDPTATPCGHVFCWNCIMEWCNEKPECPLCRAPI 362 (375)
Q Consensus 316 ~~~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~ 362 (375)
.+...|.||...- .+-.|||. |.+| ....|-.|.-.+
T Consensus 7 ~d~~~C~iC~KTK---FADG~Gh~-C~yC------k~r~CaRCGg~v 43 (62)
T 2a20_A 7 GDAPTCGICHKTK---FADGCGHN-CSYC------QTKFCARCGGRV 43 (62)
T ss_dssp SCCCCCSSSSCSC---CCSSCCEE-BTTT------CCEECTTSEEEE
T ss_pred CCcchhhhhccce---eccCCCcc-cccc------CCeeecccCCEe
Confidence 3567999998742 23457774 5555 234566665443
No 160
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=26.32 E-value=23 Score=27.26 Aligned_cols=33 Identities=21% Similarity=0.351 Sum_probs=23.0
Q ss_pred CCccccccCCCCCC---CeeeCCCCccchhhHHHHH
Q 017241 317 GVSKCTLCLSNRQD---PTATPCGHVFCWNCIMEWC 349 (375)
Q Consensus 317 ~~~~C~iC~~~~~~---p~~~~CgH~fC~~Ci~~~~ 349 (375)
.+..|.+|.+.-.. -....|+..|+..|+....
T Consensus 6 ~~~~C~~C~~~g~~~~ll~C~~C~~~~H~~Cl~~~~ 41 (111)
T 2ysm_A 6 SGANCAVCDSPGDLLDQFFCTTCGQHYHGMCLDIAV 41 (111)
T ss_dssp CCSCBTTTCCCCCTTTSEECSSSCCEECTTTTTCCC
T ss_pred CCCCCcCCCCCCCCcCCeECCCCCCCcChHHhCCcc
Confidence 45689999775332 2345789999999986544
No 161
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=26.03 E-value=99 Score=21.76 Aligned_cols=44 Identities=23% Similarity=0.469 Sum_probs=27.1
Q ss_pred CCCccccccCCCCCCCeee---C--CC-CccchhhHHHHHh----cCCCCCCccCCCC
Q 017241 316 PGVSKCTLCLSNRQDPTAT---P--CG-HVFCWNCIMEWCN----EKPECPLCRAPIT 363 (375)
Q Consensus 316 ~~~~~C~iC~~~~~~p~~~---~--Cg-H~fC~~Ci~~~~~----~~~~CP~Cr~~~~ 363 (375)
.+..-| +|...-.. ..+ . |. .-|+..|+. +. ....||.|...-.
T Consensus 14 ~~~~~C-~C~~~~~g-~MI~CD~~~C~~~wfH~~Cvg--l~~~p~g~w~Cp~C~~~~~ 67 (71)
T 1wen_A 14 NEPTYC-LCHQVSYG-EMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQESG 67 (71)
T ss_dssp TSCCCS-TTCCCSCS-SEECCSCSSCSCCCEETTTTT--CSSCCSSCCCCTTTSSCSS
T ss_pred CCCCEE-ECCCCCCC-CEeEeeCCCCCCccEecccCC--cCcCCCCCEECCCCCcccc
Confidence 345667 79875332 233 3 55 468999986 22 3358999976543
No 162
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=25.93 E-value=62 Score=22.86 Aligned_cols=37 Identities=16% Similarity=0.312 Sum_probs=17.9
Q ss_pred cccccCCCCC--CCeeeCCCCccchhhHHHHHhcCCCCCCccCCCCC
Q 017241 320 KCTLCLSNRQ--DPTATPCGHVFCWNCIMEWCNEKPECPLCRAPITH 364 (375)
Q Consensus 320 ~C~iC~~~~~--~p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 364 (375)
.|..|...+. ..+...-+..|+..| +.|-.|..++..
T Consensus 17 ~C~~C~~~I~~~~~~~~a~~~~~H~~C--------F~C~~C~~~L~~ 55 (82)
T 2ehe_A 17 TCAECQQLIGHDSRELFYEDRHFHEGC--------FRCCRCQRSLAD 55 (82)
T ss_dssp BCTTTCCBCCSSCCBCCCSSCCCBTTT--------SBCTTTCCBCSS
T ss_pred cCccCCCccccCcEEEEeCCccccccC--------CeecCCCCccCC
Confidence 5666666554 222222344454444 345556555543
No 163
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=25.64 E-value=39 Score=23.60 Aligned_cols=45 Identities=18% Similarity=0.184 Sum_probs=31.8
Q ss_pred CCCccccccCCCCCC-CeeeCCCCccch-hhHHHHHhcCCCCCCccCCC
Q 017241 316 PGVSKCTLCLSNRQD-PTATPCGHVFCW-NCIMEWCNEKPECPLCRAPI 362 (375)
Q Consensus 316 ~~~~~C~iC~~~~~~-p~~~~CgH~fC~-~Ci~~~~~~~~~CP~Cr~~~ 362 (375)
.+-+.|..|...+.. +....=|..||. .|.... -.+.|..|....
T Consensus 25 ~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~cy~~~--f~~~C~~C~~~~ 71 (76)
T 1iml_A 25 RPCLKCEKCGKTLTSGGHAEHEGKPYCNHPCYSAM--FGPKGFGRGGAE 71 (76)
T ss_dssp TTTCBCTTTCCBCCTTTEEEETTEEEETTTHHHHH--SSCCCSSCCCSS
T ss_pred CCCCCccccCccCCCCceECcCCeEeeCHHHHHHH--hCccCCCcCCce
Confidence 356899999888765 445567788998 597543 456788886543
No 164
>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM domain EVH1 DO cell motility, phosphorylation, cytoskeleton; 2.35A {Homo sapiens}
Probab=25.37 E-value=34 Score=23.21 Aligned_cols=11 Identities=18% Similarity=0.419 Sum_probs=5.1
Q ss_pred CCCCCccCCCC
Q 017241 353 PECPLCRAPIT 363 (375)
Q Consensus 353 ~~CP~Cr~~~~ 363 (375)
+.|-.|+.++.
T Consensus 33 F~C~~C~~~L~ 43 (65)
T 2iyb_E 33 FLCSCCSKCLI 43 (65)
T ss_dssp SBCTTTCCBCT
T ss_pred EECCCCCCcCC
Confidence 34444544443
No 165
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=24.72 E-value=57 Score=25.32 Aligned_cols=50 Identities=16% Similarity=0.198 Sum_probs=33.1
Q ss_pred CCCccccccCCCCC--CCeeeCCCCccchhhHHHHHhcCCCCCCccCCCCCCCc
Q 017241 316 PGVSKCTLCLSNRQ--DPTATPCGHVFCWNCIMEWCNEKPECPLCRAPITHSSL 367 (375)
Q Consensus 316 ~~~~~C~iC~~~~~--~p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 367 (375)
.+-+.|..|...+. ......-|..||..|...... +.|..|.......+.
T Consensus 34 ~~CF~C~~C~~~L~~g~~f~~~~g~~yC~~cy~~~~~--~~~~~~~~~~~~~~~ 85 (123)
T 2l3k_A 34 LECFKCAACQKHFSVGDRYLLINSDIVCEQDIYEWTK--INGGSGGSGGSGGDV 85 (123)
T ss_dssp TTTCBCTTTCCBCCTTCEEEECSSSEEEGGGHHHHHH--HHTCCCCCCSCCSCC
T ss_pred cccCccccCCCCCCCCCcEEeeCCEEEcHHHhHHHhc--cccCCCCCCCccCCC
Confidence 46788999988873 234556788999999876653 345666555444443
No 166
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=23.77 E-value=40 Score=25.47 Aligned_cols=43 Identities=19% Similarity=0.400 Sum_probs=26.7
Q ss_pred CCccccccCCCCCCCeee---CCCCccchhhHHHHHh---cCCCCCCccC
Q 017241 317 GVSKCTLCLSNRQDPTAT---PCGHVFCWNCIMEWCN---EKPECPLCRA 360 (375)
Q Consensus 317 ~~~~C~iC~~~~~~p~~~---~CgH~fC~~Ci~~~~~---~~~~CP~Cr~ 360 (375)
+...| ||.........+ .|..-|+..|+..-.. ....||.|+.
T Consensus 27 d~vrC-iC~~~~~~~~mi~Cd~C~~w~H~~C~~~~~~~~p~~w~C~~C~~ 75 (98)
T 2lv9_A 27 DVTRC-ICGFTHDDGYMICCDKCSVWQHIDCMGIDRQHIPDTYLCERCQP 75 (98)
T ss_dssp CBCCC-TTSCCSCSSCEEEBTTTCBEEETTTTTCCTTSCCSSBCCTTTSS
T ss_pred CCEEe-ECCCccCCCcEEEcCCCCCcCcCcCCCCCccCCCCCEECCCCcC
Confidence 44677 787654433333 5777788889854222 2358999964
No 167
>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii}
Probab=22.72 E-value=25 Score=29.14 Aligned_cols=10 Identities=30% Similarity=0.856 Sum_probs=7.0
Q ss_pred CCCCCccCCC
Q 017241 353 PECPLCRAPI 362 (375)
Q Consensus 353 ~~CP~Cr~~~ 362 (375)
..||.|+.++
T Consensus 149 ~~Cp~CG~~~ 158 (165)
T 2lcq_A 149 GVCPDCGSKV 158 (165)
T ss_dssp GBCTTTCCBE
T ss_pred CcCCCCCCcc
Confidence 4688887664
No 168
>2uzg_A Ubiquitin carboxyl-terminal hydrolase 33; UBL conjugation pathway, DE-ubiquitination, alternative splicing, metal-binding, thiol protease; NMR {Homo sapiens} SCOP: g.44.1.5
Probab=22.68 E-value=41 Score=25.39 Aligned_cols=26 Identities=19% Similarity=0.392 Sum_probs=19.4
Q ss_pred CccccccCCCCCC-CeeeC--CCCccchh
Q 017241 318 VSKCTLCLSNRQD-PTATP--CGHVFCWN 343 (375)
Q Consensus 318 ~~~C~iC~~~~~~-p~~~~--CgH~fC~~ 343 (375)
...|..|...-.+ -.++. |||++|.+
T Consensus 25 ~~~C~~C~~~~~~lw~CL~~~Cg~vgCgr 53 (97)
T 2uzg_A 25 LGTCQDCKVQGPNLWACLENRCSYVGCGE 53 (97)
T ss_dssp TTCCSSSCCCCSSCEEECCTTCCCEECCT
T ss_pred CCcCcCcCCCCCCceeeecccCCCcccCC
Confidence 4589999854444 57888 99999954
No 169
>2csz_A Synaptotagmin-like protein 4; exophilin 2, granuphilin, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.68 E-value=1.4e+02 Score=21.55 Aligned_cols=30 Identities=23% Similarity=0.589 Sum_probs=21.8
Q ss_pred CCCccccccCCCCCC-----CeeeCCCCccchhhH
Q 017241 316 PGVSKCTLCLSNRQD-----PTATPCGHVFCWNCI 345 (375)
Q Consensus 316 ~~~~~C~iC~~~~~~-----p~~~~CgH~fC~~Ci 345 (375)
..+..|+.|.+.+-- .+...|.|..|..|-
T Consensus 23 ~~~r~CarC~~~LG~l~~~g~~C~~Ck~rVC~~Cr 57 (76)
T 2csz_A 23 YSDRTCARCQESLGRLSPKTNTCRGCNHLVCRDCR 57 (76)
T ss_dssp CCCCBCSSSCCBCSSSCTTTSEETTTTEECCTTSE
T ss_pred CCccchhhhCccccccccCCCcCcccChhhccccc
Confidence 457899999987642 345578888888774
No 170
>1x4w_A Hypothetical protein FLJ13222; ZF-AN1 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.32 E-value=54 Score=23.12 Aligned_cols=27 Identities=26% Similarity=0.580 Sum_probs=19.7
Q ss_pred CCccccccCCCCCCC----eeeCCCCccchh
Q 017241 317 GVSKCTLCLSNRQDP----TATPCGHVFCWN 343 (375)
Q Consensus 317 ~~~~C~iC~~~~~~p----~~~~CgH~fC~~ 343 (375)
....|..|.....-+ ..--||.+||..
T Consensus 14 ~~~rC~~C~kk~gL~~~egf~CrCg~~FC~~ 44 (67)
T 1x4w_A 14 SRRRCFQCQTKLELVQQELGSCRCGYVFCML 44 (67)
T ss_dssp CTTBCSSSCCBCCHHHHHHHCCSSSCCCCTT
T ss_pred cCCcchhhCCeecccccCceEecCCCEehhc
Confidence 457999998876644 233799999974
Done!