Your job contains 1 sequence.
>017242
MASLTPPSTAVQPGRIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVP
VAVAFNLFDQFLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECG
ASLLVTDFSPLREIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKI
NKLLPEYLIDYPMLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEV
LKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEA
IDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQ
TADPVSIYLWMFILD
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 017242
(375 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2034675 - symbol:PHR1 "photolyase 1" species:3... 1439 2.4e-147 1
UNIPROTKB|Q6F6A2 - symbol:PHR "Deoxyribodipyrimidine phot... 1108 2.9e-112 1
UNIPROTKB|F1NSZ2 - symbol:LOC424919 "Uncharacterized prot... 747 5.1e-74 1
ZFIN|ZDB-GENE-040426-1644 - symbol:zgc:66475 "zgc:66475" ... 707 8.9e-70 1
TIGR_CMR|GSU_2829 - symbol:GSU_2829 "deoxyribodipyrimidin... 696 1.3e-68 1
FB|FBgn0003082 - symbol:phr "photorepair" species:7227 "D... 690 5.6e-68 1
FB|FBgn0042173 - symbol:CG18853 species:7227 "Drosophila ... 141 6.4e-07 1
TIGR_CMR|CBU_1176 - symbol:CBU_1176 "deoxyribodipyrimidin... 118 3.9e-05 2
TIGR_CMR|SPO_1917 - symbol:SPO_1917 "deoxyribodipyrimidin... 111 0.00015 2
>TAIR|locus:2034675 [details] [associations]
symbol:PHR1 "photolyase 1" species:3702 "Arabidopsis
thaliana" [GO:0003904 "deoxyribodipyrimidine photo-lyase activity"
evidence=IEA] [GO:0003913 "DNA photolyase activity"
evidence=IEA;IDA] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0009650 "UV protection" evidence=IMP] [GO:0000719
"photoreactive repair" evidence=IMP] InterPro:IPR005101
InterPro:IPR008148 Pfam:PF03441 PROSITE:PS01083 PROSITE:PS01084
InterPro:IPR006050 EnsemblPlants:AT1G12370.2 Pfam:PF00875
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0000166
GO:GO:0003677 GO:GO:0000719 Gene3D:3.40.50.620 InterPro:IPR014729
GO:GO:0009650 EMBL:AC025416 eggNOG:COG0415 GO:GO:0003913
SUPFAM:SSF52425 SUPFAM:SSF48173 PROSITE:PS51645 KO:K01669
GO:GO:0003904 UniGene:At.70097 EMBL:AF053365 EMBL:X99301
EMBL:AB010875 EMBL:AY034961 EMBL:AY113909 IPI:IPI00531343
IPI:IPI00531380 PIR:T52112 RefSeq:NP_563906.1 RefSeq:NP_849651.1
UniGene:At.19160 ProteinModelPortal:Q9SB00 SMR:Q9SB00 STRING:Q9SB00
PaxDb:Q9SB00 PRIDE:Q9SB00 GeneID:837792 KEGG:ath:AT1G12370
TAIR:At1g12370 HOGENOM:HOG000016456 InParanoid:Q9SB00 OMA:LADNFCF
PhylomeDB:Q9SB00 ProtClustDB:CLSN2687780 Genevestigator:Q9SB00
PANTHER:PTHR10211 TIGRFAMs:TIGR00591 Uniprot:Q9SB00
Length = 496
Score = 1439 (511.6 bits), Expect = 2.4e-147, P = 2.4e-147
Identities = 268/363 (73%), Positives = 311/363 (85%)
Query: 8 STAVQPGRIRVLKQGS---LDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVA 64
+ +VQPGRIR+LK+GS LD+ GPVVYWMFRDQR++DNWALIHAVD AN+ N PVAV
Sbjct: 4 TVSVQPGRIRILKKGSWQPLDQTVGPVVYWMFRDQRLKDNWALIHAVDLANRTNAPVAVV 63
Query: 65 FNLFDQFLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLL 124
FNLFDQFL AKARQLGFML+GLR L I+ + QI FFL QG+A++ IPNF+ ECGAS L
Sbjct: 64 FNLFDQFLDAKARQLGFMLKGLRQLHHQID-SLQIPFFLLQGDAKETIPNFLTECGASHL 122
Query: 125 VTDFSPLREIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLL 184
VTDFSPLREIRRCKD++ R SDS+ IHEVDAHNVVP+W AS KLEYSA+T+RGKINKLL
Sbjct: 123 VTDFSPLREIRRCKDEVVKRTSDSLAIHEVDAHNVVPMWAASSKLEYSARTIRGKINKLL 182
Query: 185 PEYLIDYPMLEQPIEKWTGT--RQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLK 242
P+YLI++P LE P +KWTG ++ +DWDS+I V+R+GAEVPEI WC GEDA +EVL
Sbjct: 183 PDYLIEFPKLEPPKKKWTGMMDKKLVDWDSLIDKVVREGAEVPEIEWCVPGEDAGIEVLM 242
Query: 243 GSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAID 302
G+KDGFLTKRLKNY TDRNNP+KP+ALSGLSPYLHFGQ+SAQRCALEARK R P+A+D
Sbjct: 243 GNKDGFLTKRLKNYSTDRNNPIKPKALSGLSPYLHFGQVSAQRCALEARKVRSTSPQAVD 302
Query: 303 TFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTA 362
TFLEELIVRREL+DNFC+YQP+YDSLKGAWEWARKSL DHASDKREHIY+ EQ EK TA
Sbjct: 303 TFLEELIVRRELSDNFCYYQPHYDSLKGAWEWARKSLMDHASDKREHIYSLEQLEKGLTA 362
Query: 363 DPV 365
DP+
Sbjct: 363 DPL 365
>UNIPROTKB|Q6F6A2 [details] [associations]
symbol:PHR "Deoxyribodipyrimidine photo-lyase"
species:39947 "Oryza sativa Japonica Group" [GO:0003904
"deoxyribodipyrimidine photo-lyase activity" evidence=IDA]
[GO:0006281 "DNA repair" evidence=IDA] [GO:0009650 "UV protection"
evidence=IDA] [GO:0003914 "DNA (6-4) photolyase activity"
evidence=IDA] InterPro:IPR005101 InterPro:IPR008148 Pfam:PF03441
PROSITE:PS01083 PROSITE:PS01084 InterPro:IPR006050 Pfam:PF00875
GO:GO:0005634 GO:GO:0000166 GO:GO:0003677 GO:GO:0006281
EMBL:DP000086 EMBL:AP008216 GO:GO:0000719 Gene3D:3.40.50.620
InterPro:IPR014729 GO:GO:0009650 eggNOG:COG0415 SUPFAM:SSF52425
SUPFAM:SSF48173 PROSITE:PS51645 KO:K01669 GO:GO:0003904
PANTHER:PTHR10211 TIGRFAMs:TIGR00591 EMBL:AB096003 EMBL:AB099694
EMBL:AB198744 EMBL:AB210109 EMBL:AC131375 RefSeq:NP_001176041.1
UniGene:Os.46278 PDB:3UMV PDBsum:3UMV ProteinModelPortal:Q6F6A2
STRING:Q6F6A2 EnsemblPlants:LOC_Os10g08580.1 GeneID:9272017
KEGG:osa:9272017 Gramene:Q6F6A2 OMA:MWSICGL BRENDA:4.1.99.3
Uniprot:Q6F6A2
Length = 506
Score = 1108 (395.1 bits), Expect = 2.9e-112, P = 2.9e-112
Identities = 217/365 (59%), Positives = 265/365 (72%)
Query: 7 PSTAVQPGRIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFN 66
PS A P R+RV+ G K GPVVYWM RDQR+ DNWAL+HA A + P+AVAF
Sbjct: 18 PSPA-HPSRVRVIHPGG-GKPGGPVVYWMLRDQRLADNWALLHAAGLAAASASPLAVAFA 75
Query: 67 LFDQ--FLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLL 124
LF + L A+ RQLGF+LRGLR L + + FFLF G + IP VR GAS L
Sbjct: 76 LFPRPFLLSARRRQLGFLLRGLRRLAADAAAR-HLPFFLFTGGPAE-IPALVRRLGASTL 133
Query: 125 VTDFSPLREIRRCKDKICN---RVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKIN 181
V DFSPLR +R D + R + V +H+VDAHNVVPVW AS K+EYSAKT RGK++
Sbjct: 134 VADFSPLRPVREALDAVVGDLRREAPGVAVHQVDAHNVVPVWTASAKMEYSAKTFRGKVS 193
Query: 182 KLLPEYLIDYPMLEQPIEKWTGTR-QSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEV 240
K++ EYL+++P L + W + + +DWD++IA V + VPEI WCE GE+AA+E
Sbjct: 194 KVMDEYLVEFPELPAVVP-WDREQPEGVDWDALIARVCSEAENVPEIDWCEPGEEAAIEA 252
Query: 241 LKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEA 300
L GSKDGFLTKR+K+Y TDRN+P KPRALSGLSPYLHFG ISAQRCALEA+K R L P++
Sbjct: 253 LLGSKDGFLTKRIKSYETDRNDPTKPRALSGLSPYLHFGHISAQRCALEAKKCRHLSPKS 312
Query: 301 IDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQ 360
+D FLEEL+VRRELADNFC+YQP YDSL GAWEWARK+L DHA+DKREHIYT+EQ E A+
Sbjct: 313 VDAFLEELVVRRELADNFCYYQPQYDSLSGAWEWARKTLMDHAADKREHIYTREQLENAK 372
Query: 361 TADPV 365
T DP+
Sbjct: 373 THDPL 377
>UNIPROTKB|F1NSZ2 [details] [associations]
symbol:LOC424919 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003904 "deoxyribodipyrimidine photo-lyase
activity" evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA]
InterPro:IPR005101 InterPro:IPR008148 Pfam:PF03441 PROSITE:PS01083
PROSITE:PS01084 InterPro:IPR006050 Pfam:PF00875 GO:GO:0006281
Gene3D:3.40.50.620 InterPro:IPR014729 SUPFAM:SSF52425
SUPFAM:SSF48173 GO:GO:0003904 OMA:LADNFCF PANTHER:PTHR10211
TIGRFAMs:TIGR00591 GeneTree:ENSGT00390000010302 EMBL:AADN02020635
IPI:IPI00595736 Ensembl:ENSGALT00000012188 Uniprot:F1NSZ2
Length = 487
Score = 747 (268.0 bits), Expect = 5.1e-74, P = 5.1e-74
Identities = 156/353 (44%), Positives = 224/353 (63%)
Query: 15 RIRVLKQGSLDKKRGP--VVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFL 72
R R++ +GS + K G ++YWM RDQRV+DNWA ++A A K +P+ V F L FL
Sbjct: 37 RARLVSRGS-ELKEGAECILYWMCRDQRVQDNWAFLYAQRLALKQELPLRVCFCLVPAFL 95
Query: 73 GAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLR 132
A R GFMLRGLR + + E I F + G +D +P+FV E G LVTDF PLR
Sbjct: 96 DATIRHYGFMLRGLREVAKECAE-LDIPFHVLLGCPKDVLPSFVVEHGVGGLVTDFCPLR 154
Query: 133 EIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYP 192
R+ +++ R+ + V +VDAHN+VP WVAS K EYSA+T+R KI+ LPE+L ++P
Sbjct: 155 VPRQWVEEVKERLPEDVPFAQVDAHNIVPCWVASPKQEYSARTIRAKIHSQLPEFLTEFP 214
Query: 193 MLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKR 252
+ + + I WD+ ++ L+ V E+ W G A + +L+ F+T+R
Sbjct: 215 PVIRHPHPPPNPPEPIAWDACYSS-LQVDRTVTEVAWATPGTAAGLAMLQS----FITER 269
Query: 253 LKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVRR 312
LK++ + RN+P K ALS LSP+ HFGQ+S QR LE +K R++ E++D F+EE +VRR
Sbjct: 270 LKSFGSQRNDPNKA-ALSNLSPWFHFGQVSTQRAILEVQKHRRVYKESVDAFVEEAVVRR 328
Query: 313 ELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPV 365
ELA+NFC+Y NYDS++GA++WA+ +LK HA DKR +Y Q E+A T DP+
Sbjct: 329 ELAENFCYYNENYDSVRGAYDWAQSTLKLHAKDKRPFLYKLPQLEQATTHDPL 381
>ZFIN|ZDB-GENE-040426-1644 [details] [associations]
symbol:zgc:66475 "zgc:66475" species:7955 "Danio
rerio" [GO:0006281 "DNA repair" evidence=IEA] [GO:0003904
"deoxyribodipyrimidine photo-lyase activity" evidence=IEA]
[GO:0003913 "DNA photolyase activity" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR005101
InterPro:IPR008148 Pfam:PF03441 PROSITE:PS01083 PROSITE:PS01084
InterPro:IPR006050 Pfam:PF00875 ZFIN:ZDB-GENE-040426-1644
GO:GO:0006281 Gene3D:3.40.50.620 InterPro:IPR014729 eggNOG:COG0415
SUPFAM:SSF52425 SUPFAM:SSF48173 KO:K01669 GO:GO:0003904
HOGENOM:HOG000016456 PANTHER:PTHR10211 TIGRFAMs:TIGR00591
GeneTree:ENSGT00390000010302 EMBL:CU855922 EMBL:BC054710
IPI:IPI00500266 RefSeq:NP_957358.1 UniGene:Dr.76607 STRING:Q7SYI9
Ensembl:ENSDART00000077278 GeneID:394039 KEGG:dre:394039
HOVERGEN:HBG008186 InParanoid:Q7SYI9 OrthoDB:EOG42BX8G
NextBio:20815001 Uniprot:Q7SYI9
Length = 516
Score = 707 (253.9 bits), Expect = 8.9e-70, P = 8.9e-70
Identities = 143/350 (40%), Positives = 219/350 (62%)
Query: 15 RIRVLKQGSLDKKRGP-VVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLG 73
R+R L K+ V+YWM RDQR++DNWALI++ A +P+ + F L +FL
Sbjct: 56 RLRYLSDTQKVKQSSQGVLYWMSRDQRIQDNWALIYSQQLALAEKLPLHICFCLVPKFLD 115
Query: 74 AKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLRE 133
A RQ FML+GL+ + + + + I F L GE N+P FV+ +VTDF+PLR
Sbjct: 116 ATYRQYAFMLKGLQEVVKECK-SLDIEFHLLSGEPVHNLPAFVKSWNIGAVVTDFNPLRI 174
Query: 134 IRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPM 193
+ D + + + +VDAHNVVP W AS KLEY A+T+RGKI K L E+L D P+
Sbjct: 175 SLQWIDTVKKHLPSDIPFIQVDAHNVVPCWEASTKLEYGARTIRGKITKHLQEFLTDMPL 234
Query: 194 LEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRL 253
++ + + IDW+ ++++ L V E+ W + G M +L + F+ +RL
Sbjct: 235 VDTHPYCASRAAKIIDWEEVLSS-LEVDHNVCEVEWAQPGTTGGMFML----ESFIDQRL 289
Query: 254 KNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVRRE 313
+ T RNNP A+S LSP++H GQ+SAQR ++ ++ +K E++ +F+EE++VRRE
Sbjct: 290 HIFATHRNNP-NSDAVSHLSPWIHAGQLSAQRVVMQVKR-KKNASESVASFIEEIVVRRE 347
Query: 314 LADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTAD 363
LADNFCFY NYD++ GA++WA+K+L++HA D+R+++YTK++ E A+T D
Sbjct: 348 LADNFCFYNQNYDNISGAYDWAKKTLQEHAKDRRQYLYTKKELESAETHD 397
>TIGR_CMR|GSU_2829 [details] [associations]
symbol:GSU_2829 "deoxyribodipyrimidine photolyase,
putative" species:243231 "Geobacter sulfurreducens PCA" [GO:0003904
"deoxyribodipyrimidine photo-lyase activity" evidence=ISS]
[GO:0006281 "DNA repair" evidence=ISS] InterPro:IPR005101
InterPro:IPR008148 Pfam:PF03441 PROSITE:PS01083 InterPro:IPR006050
Pfam:PF00875 GO:GO:0006281 EMBL:AE017180 GenomeReviews:AE017180_GR
Gene3D:3.40.50.620 InterPro:IPR014729 SUPFAM:SSF52425
SUPFAM:SSF48173 KO:K01669 GO:GO:0003904 HOGENOM:HOG000016456
OMA:LADNFCF PANTHER:PTHR10211 TIGRFAMs:TIGR00591 RefSeq:NP_953872.1
ProteinModelPortal:Q749B5 GeneID:2686850 KEGG:gsu:GSU2829
PATRIC:22028503 ProtClustDB:CLSK2761237
BioCyc:GSUL243231:GH27-2781-MONOMER Uniprot:Q749B5
Length = 461
Score = 696 (250.1 bits), Expect = 1.3e-68, P = 1.3e-68
Identities = 157/351 (44%), Positives = 201/351 (57%)
Query: 14 GRIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLG 73
GRIR L QG + GPV+YWM RDQRV DNWALIHA A + P+ V F L +FLG
Sbjct: 4 GRIRSLLQGG-EATAGPVIYWMSRDQRVADNWALIHAQKLALARSAPLGVLFCLAPRFLG 62
Query: 74 AKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLRE 133
A ARQ FML+GL ++ + I FFL G+ + + F R S LVTDF PLR
Sbjct: 63 ATARQYRFMLKGLEQVRAALNR-LDIPFFLVTGDPKGAVAAFTRRHRVSYLVTDFDPLRV 121
Query: 134 IRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPM 193
R K ++ +S + EVDAHN+VP W+ S++ E+ A T+R KI++LLP+++ +P
Sbjct: 122 KREWKRQVAGEIS--IPFDEVDAHNIVPCWITSQRQEWGAYTIRPKIHRLLPDFMEPFPP 179
Query: 194 LEQPIEKWTGTRQS-IDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKR 252
L++ W G S +W + VPE+ W SGE+AA L FL
Sbjct: 180 LQRHPFPWQGALPSDAEWRETFTG-MTLDESVPEVSWLASGEEAAQAALAR----FLEDG 234
Query: 253 LKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVRR 312
L Y T RNNP SGLSP+LHFGQ+SAQR A +A A E+ D FLEELIVRR
Sbjct: 235 LAGYATRRNNPAV-MGQSGLSPWLHFGQLSAQRVA-QAAFAAAAPIESRDAFLEELIVRR 292
Query: 313 ELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTAD 363
ELADNFC+Y YD G EWA+++L H D R Y + E+ QT D
Sbjct: 293 ELADNFCYYNDAYDRFDGFPEWAQRTLNRHRHDPRPQCYEHDVLEQGQTHD 343
>FB|FBgn0003082 [details] [associations]
symbol:phr "photorepair" species:7227 "Drosophila
melanogaster" [GO:0006281 "DNA repair" evidence=ISS] [GO:0003904
"deoxyribodipyrimidine photo-lyase activity" evidence=ISS;NAS]
InterPro:IPR005101 InterPro:IPR008148 Pfam:PF03441 PROSITE:PS01083
PROSITE:PS01084 InterPro:IPR006050 Pfam:PF00875 GO:GO:0006281
Gene3D:3.40.50.620 InterPro:IPR014729 SUPFAM:SSF52425
SUPFAM:SSF48173 GO:GO:0003904 PANTHER:PTHR10211 TIGRFAMs:TIGR00591
FlyBase:FBgn0003082 ChiTaRS:phr EMBL:D26021 PIR:S52047
ProteinModelPortal:Q24443 STRING:Q24443 PRIDE:Q24443
InParanoid:Q24443 ArrayExpress:Q24443 Bgee:Q24443 Uniprot:Q24443
Length = 640
Score = 690 (248.0 bits), Expect = 5.6e-68, P = 5.6e-68
Identities = 156/354 (44%), Positives = 215/354 (60%)
Query: 15 RIRVLKQGSLDKKR--GPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFL 72
R+RVL + K+ G VVYWM RD RV+DNWAL+ A A K +P+ V F L +FL
Sbjct: 184 RVRVLSKTEDVKESSLGGVVYWMSRDGRVQDNWALLFAQRLALKLELPLTVVFCLVPKFL 243
Query: 73 GAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLR 132
A R FM+ GL+ +++ I F L G A + +P FV+ +V DF+PLR
Sbjct: 244 NATIRHYKFMMGGLQEVEQQCR-ALDIPFHLLMGSAVEKLPQFVKSKDIGAVVCDFAPLR 302
Query: 133 EIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYP 192
R+ + + + SV + +VDAHNVVP+WVAS+K EY+A+T+R KIN L EYL ++P
Sbjct: 303 LPRQWVEDVGKALPKSVPLVQVDAHNVVPLWVASDKQEYAARTIRNKINSKLGEYLSEFP 362
Query: 193 -MLEQPIEKWTGTRQ--SIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFL 249
++ P TG + ++DW + A+ L+ EV E+ W + G AA + L F
Sbjct: 363 PVVRHP--HGTGCKNVNTVDWSAAYAS-LQCDMEVDEVQWAKPGYKAACQQLYE----FC 415
Query: 250 TKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELI 309
++RL+++ RN+P ALSGLSP+LHFG ISAQRCALE ++ R + D F EE I
Sbjct: 416 SRRLRHFNDKRNDPTAD-ALSGLSPWLHFGHISAQRCALEVQRFRGQHKASADAFCEEAI 474
Query: 310 VRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTAD 363
VRRELADNFCFY +YDSLKG WA ++L H DKR+ Y+ E+ EK+ T D
Sbjct: 475 VRRELADNFCFYNEHYDSLKGLSSWAYQTLDAHRKDKRDPCYSLEELEKSLTYD 528
>FB|FBgn0042173 [details] [associations]
symbol:CG18853 species:7227 "Drosophila melanogaster"
[GO:0006281 "DNA repair" evidence=IEA] [GO:0003904
"deoxyribodipyrimidine photo-lyase activity" evidence=IEA]
InterPro:IPR005101 InterPro:IPR008148 Pfam:PF03441 PROSITE:PS01084
EMBL:AE013599 GO:GO:0006281 eggNOG:COG0415 SUPFAM:SSF48173
KO:K01669 GO:GO:0003904 Gene3D:2.40.30.70 InterPro:IPR001378
InterPro:IPR023370 Pfam:PF01980 SUPFAM:SSF118196 PANTHER:PTHR10211
GeneTree:ENSGT00390000010302 EMBL:BT031305 RefSeq:NP_724615.1
UniGene:Dm.6978 SMR:A1Z758 EnsemblMetazoa:FBtr0089426 GeneID:246511
KEGG:dme:Dmel_CG18853 UCSC:CG18853-RA FlyBase:FBgn0042173
InParanoid:A1Z758 OrthoDB:EOG4M0CH8 GenomeRNAi:246511
NextBio:842749 Uniprot:A1Z758
Length = 330
Score = 141 (54.7 bits), Expect = 6.4e-07, P = 6.4e-07
Identities = 26/49 (53%), Positives = 33/49 (67%)
Query: 315 ADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTAD 363
ADNFCFY +YDSLKG WA ++L H DKR+ Y+ E+ EK+ T D
Sbjct: 170 ADNFCFYNEHYDSLKGLSSWAYQTLDAHRKDKRDPCYSLEELEKSLTYD 218
>TIGR_CMR|CBU_1176 [details] [associations]
symbol:CBU_1176 "deoxyribodipyrimidine photolyase - class
I" species:227377 "Coxiella burnetii RSA 493" [GO:0003904
"deoxyribodipyrimidine photo-lyase activity" evidence=ISS]
[GO:0006281 "DNA repair" evidence=ISS] InterPro:IPR002081
InterPro:IPR005101 InterPro:IPR018394 Pfam:PF03441 PRINTS:PR00147
PROSITE:PS00394 PROSITE:PS00691 InterPro:IPR006050 Pfam:PF00875
GO:GO:0006281 EMBL:AE016828 GenomeReviews:AE016828_GR GO:GO:0018298
Gene3D:3.40.50.620 InterPro:IPR014729 SUPFAM:SSF52425
SUPFAM:SSF48173 HOGENOM:HOG000245621 OMA:CKVDFWL KO:K01669
GO:GO:0003904 RefSeq:NP_820171.1 HSSP:P00914
ProteinModelPortal:Q83CE4 GeneID:1209079 KEGG:cbu:CBU_1176
PATRIC:17931093 ProtClustDB:CLSK2394345
BioCyc:CBUR227377:GJ7S-1162-MONOMER Uniprot:Q83CE4
Length = 472
Score = 118 (46.6 bits), Expect = 3.9e-05, Sum P(2) = 3.9e-05
Identities = 39/98 (39%), Positives = 53/98 (54%)
Query: 229 WCESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRC-- 286
W + GE A VLK F+ + LKNYP R+ P + S LSPYLHFG+IS ++
Sbjct: 195 W-KPGEKNAQIVLKK----FIKENLKNYPAHRDRP-DISSTSHLSPYLHFGEISIRQVWT 248
Query: 287 AL-EARKARKLCPEAIDTFLEELIVRRELADNFCFYQP 323
A+ +A K +A D FL +LI R E A ++ P
Sbjct: 249 AITQATIQDKNLQKAADVFLRQLIWR-EFAYYLLWHFP 285
Score = 52 (23.4 bits), Expect = 3.9e-05, Sum P(2) = 3.9e-05
Identities = 10/32 (31%), Positives = 20/32 (62%)
Query: 32 VYWMFRDQRVRDNWALIHAVDQANKNNVPVAV 63
++W +D R+ DN AL+ A A+ + +P+ +
Sbjct: 4 IFWFRQDLRLSDNPALVEAAKSAD-HLIPLYI 34
>TIGR_CMR|SPO_1917 [details] [associations]
symbol:SPO_1917 "deoxyribodipyrimidine photolyase"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0003904
"deoxyribodipyrimidine photo-lyase activity" evidence=ISS]
[GO:0006281 "DNA repair" evidence=ISS] InterPro:IPR002081
InterPro:IPR005101 InterPro:IPR018394 Pfam:PF03441 PRINTS:PR00147
PROSITE:PS00394 InterPro:IPR006050 Pfam:PF00875 EMBL:CP000031
GenomeReviews:CP000031_GR GO:GO:0006281 GO:GO:0018298
Gene3D:3.40.50.620 InterPro:IPR014729 SUPFAM:SSF52425
SUPFAM:SSF48173 HOGENOM:HOG000245621 OMA:CKVDFWL KO:K01669
GO:GO:0003904 RefSeq:YP_167152.1 ProteinModelPortal:Q5LS53
GeneID:3192692 KEGG:sil:SPO1917 PATRIC:23377163
ProtClustDB:CLSK933677 Uniprot:Q5LS53
Length = 481
Score = 111 (44.1 bits), Expect = 0.00015, Sum P(2) = 0.00015
Identities = 43/149 (28%), Positives = 67/149 (44%)
Query: 192 PMLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTK 251
P +P E W G+ DW + A +R+GA V GE AA+E L D F+
Sbjct: 167 PARVRPPEAWPGSEALSDWG--LGAPMRRGAAVVATHQAP-GEAAALERL----DRFIAT 219
Query: 252 RLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVR 311
+ Y R+ P S LS L G+I + A +A + +TFL++L V
Sbjct: 220 GIGQYDACRDLPAGD-GTSTLSDALSLGEIGPRTLWHRAGEAAHKGAQGAETFLKQL-VW 277
Query: 312 RELADNFCFYQPNY--DSLKGAWE---WA 335
R+ A + ++ P+ ++ + WE WA
Sbjct: 278 RDFAYHLMYHTPHLLSENWRPGWEVFPWA 306
Score = 54 (24.1 bits), Expect = 0.00015, Sum P(2) = 0.00015
Identities = 25/103 (24%), Positives = 42/103 (40%)
Query: 31 VVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLR-GLRLL 89
++YW+ RD R+ D+ L A PV F + D+ + A F L GL
Sbjct: 7 IIYWLRRDLRLADHPGLAAAAASGR----PVVPVF-IHDESVAALGAAPAFRLGLGLERF 61
Query: 90 QRNIEETFQILFFLFQGEAEDNIPNFVRECGASLL--VTDFSP 130
+ + L L +G A + + E GA + +++P
Sbjct: 62 GATLGDMGSRLI-LRRGSAPAVLQALIAETGAGAVWWTREYTP 103
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.321 0.137 0.420 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 375 375 0.00088 117 3 11 22 0.37 34
34 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 9
No. of states in DFA: 625 (66 KB)
Total size of DFA: 271 KB (2143 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 29.16u 0.10s 29.26t Elapsed: 00:00:02
Total cpu time: 29.16u 0.10s 29.26t Elapsed: 00:00:02
Start: Sat May 11 00:07:45 2013 End: Sat May 11 00:07:47 2013