BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017242
(375 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|224124936|ref|XP_002329850.1| predicted protein [Populus trichocarpa]
gi|222871087|gb|EEF08218.1| predicted protein [Populus trichocarpa]
Length = 503
Score = 610 bits (1573), Expect = e-172, Method: Compositional matrix adjust.
Identities = 295/370 (79%), Positives = 327/370 (88%), Gaps = 5/370 (1%)
Query: 1 MASLTPP---STAVQPGRIRVLKQGSLDK-KRGPVVYWMFRDQRVRDNWALIHAVDQANK 56
MASL+ P +T VQPGRIRV+K+GS + GPVVYWMFRDQR++DNWALIHAVDQAN+
Sbjct: 1 MASLSSPPTQNTIVQPGRIRVIKEGSRGQVGGGPVVYWMFRDQRLQDNWALIHAVDQANR 60
Query: 57 NNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFV 116
+NVPVAVAFNLFDQFLGAKARQLGFMLRGL LQ +IEET QI FFLF GEAE+ IP F+
Sbjct: 61 SNVPVAVAFNLFDQFLGAKARQLGFMLRGLCQLQSHIEETLQIPFFLFLGEAEETIPAFL 120
Query: 117 RECGASLLVTDFSPLREIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTL 176
++CGASLLVTDFSPLR+ R C+D+IC RVSDSVTIHEVDAHNVVP+WVASEKLEYSA+TL
Sbjct: 121 KDCGASLLVTDFSPLRQFRTCQDEICKRVSDSVTIHEVDAHNVVPIWVASEKLEYSARTL 180
Query: 177 RGKINKLLPEYLIDYPMLEQPIEKWT-GTRQSIDWDSIIAAVLRKGAEVPEIGWCESGED 235
RGKINKLLPEYLID+PML+ P KW T+QSIDW+ +I VLRKGAEVPEI WCE GED
Sbjct: 181 RGKINKLLPEYLIDFPMLQLPKNKWVAATKQSIDWNDLIDNVLRKGAEVPEIKWCEPGED 240
Query: 236 AAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARK 295
AAMEVL GSKDGFLT+RLKNY TDRNNPLKP+ LSGLSPYLHFGQISAQRCALEARK R
Sbjct: 241 AAMEVLMGSKDGFLTQRLKNYSTDRNNPLKPKGLSGLSPYLHFGQISAQRCALEARKVRN 300
Query: 296 LCPEAIDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQ 355
L P++ D FLEELIVRRELADNFCFYQPNYDS+ GAWEWARK+L DHASDKREHIY+KEQ
Sbjct: 301 LSPQSADAFLEELIVRRELADNFCFYQPNYDSIHGAWEWARKTLADHASDKREHIYSKEQ 360
Query: 356 FEKAQTADPV 365
EKAQTADP+
Sbjct: 361 LEKAQTADPL 370
>gi|225470301|ref|XP_002266483.1| PREDICTED: deoxyribodipyrimidine photo-lyase-like [Vitis vinifera]
Length = 485
Score = 600 bits (1547), Expect = e-169, Method: Compositional matrix adjust.
Identities = 285/357 (79%), Positives = 317/357 (88%), Gaps = 2/357 (0%)
Query: 11 VQPGRIRVLKQGSLDKKR--GPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLF 68
VQ GRIRVLK+GS R GPVVYWMFRDQR+RDNWALIHAVDQANK NVPVA+AFNLF
Sbjct: 2 VQQGRIRVLKEGSTPSGRDAGPVVYWMFRDQRLRDNWALIHAVDQANKANVPVAIAFNLF 61
Query: 69 DQFLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDF 128
DQFLGAKARQLGFMLRGLRLL R++E+T QI FFLFQGEA + IPNF+RE GASLLVTDF
Sbjct: 62 DQFLGAKARQLGFMLRGLRLLHRDLEQTLQIPFFLFQGEAIETIPNFLREYGASLLVTDF 121
Query: 129 SPLREIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYL 188
SPLRE+++ K++IC RV V+IHEVDAHN+VP WVASEKLEYSA+T+RGKINKLLPEYL
Sbjct: 122 SPLREVQKWKEEICKRVGKKVSIHEVDAHNIVPTWVASEKLEYSARTIRGKINKLLPEYL 181
Query: 189 IDYPMLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGF 248
ID+P L+ P KW GT QSIDWD +I VLR+GAEVPEI WCESGE+AA+E+L GSK+GF
Sbjct: 182 IDFPTLQPPSIKWAGTNQSIDWDDLITEVLREGAEVPEIKWCESGENAAVEILMGSKNGF 241
Query: 249 LTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEEL 308
LTKRLKNY TDRNNPLKP ALSGLSPYLHFGQISAQRCALEA+K RK CP+A+D FLEEL
Sbjct: 242 LTKRLKNYSTDRNNPLKPGALSGLSPYLHFGQISAQRCALEAKKNRKNCPQAVDVFLEEL 301
Query: 309 IVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPV 365
IVRRELADNFCFYQP Y+SL+GAWEWARK+L DHASDKREHIYTKEQ E AQTADP+
Sbjct: 302 IVRRELADNFCFYQPRYNSLQGAWEWARKTLMDHASDKREHIYTKEQLENAQTADPL 358
>gi|255537109|ref|XP_002509621.1| DNA photolyase, putative [Ricinus communis]
gi|223549520|gb|EEF51008.1| DNA photolyase, putative [Ricinus communis]
Length = 489
Score = 600 bits (1547), Expect = e-169, Method: Compositional matrix adjust.
Identities = 287/364 (78%), Positives = 324/364 (89%), Gaps = 5/364 (1%)
Query: 1 MASLTPPSTAVQPGRIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVP 60
MASL ST++QPGR+RVLK+G L+K+ GPV+YWMFRDQR+RDNWALIHAVDQANK NVP
Sbjct: 1 MASL---STSIQPGRVRVLKEG-LEKQTGPVIYWMFRDQRLRDNWALIHAVDQANKANVP 56
Query: 61 VAVAFNLFDQFLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECG 120
VAVAFNLFDQFLGAKARQLGFML+GLRLLQ IEE QI FFLFQG AED IP F+ ECG
Sbjct: 57 VAVAFNLFDQFLGAKARQLGFMLKGLRLLQGKIEERLQIPFFLFQGAAEDTIPQFLGECG 116
Query: 121 ASLLVTDFSPLREIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKI 180
ASLLVTDFSPLREIR+ KD+IC R+SD+VTIHEVDAHN+VP+WVASEKLEYSA+T+R KI
Sbjct: 117 ASLLVTDFSPLREIRKSKDEICMRISDTVTIHEVDAHNIVPIWVASEKLEYSARTIRSKI 176
Query: 181 NKLLPEYLIDYPMLEQPIEKWT-GTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAME 239
NK LP+YLID+P L P W+ +SIDWD++I VLRKGAEVPEI WC GEDAAME
Sbjct: 177 NKRLPDYLIDFPALRPPNTMWSAAANKSIDWDTLIDEVLRKGAEVPEIEWCMPGEDAAME 236
Query: 240 VLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPE 299
VL G+K+GFLTKRLKNY TDRNNPLKP+ LSGLSPYLHFGQISAQRCALEARKA+KLCP+
Sbjct: 237 VLMGTKNGFLTKRLKNYSTDRNNPLKPQGLSGLSPYLHFGQISAQRCALEARKAQKLCPQ 296
Query: 300 AIDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKA 359
++D+FLEELIVRRELADNFCFYQP+YDSL+GAWEWAR +L DHASDKREHIY+KEQ E+A
Sbjct: 297 SVDSFLEELIVRRELADNFCFYQPHYDSLQGAWEWARNTLLDHASDKREHIYSKEQLERA 356
Query: 360 QTAD 363
QTAD
Sbjct: 357 QTAD 360
>gi|296082842|emb|CBI22143.3| unnamed protein product [Vitis vinifera]
Length = 543
Score = 583 bits (1504), Expect = e-164, Method: Compositional matrix adjust.
Identities = 281/358 (78%), Positives = 313/358 (87%), Gaps = 3/358 (0%)
Query: 11 VQPGRIRVLKQGSLDKKR--GPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLF 68
VQ GRIRVLK+GS R GPVVYWMFRDQR+RDNWALIHAVDQANK NVPVA+AFNLF
Sbjct: 2 VQQGRIRVLKEGSTPSGRDAGPVVYWMFRDQRLRDNWALIHAVDQANKANVPVAIAFNLF 61
Query: 69 DQFLGAKARQLGFMLRGLRLLQRNIEETFQI-LFFLFQGEAEDNIPNFVRECGASLLVTD 127
DQFLGAKARQLGFMLRGLRLL R++E+T QI L GEA + IPNF+RE GASLLVTD
Sbjct: 62 DQFLGAKARQLGFMLRGLRLLHRDLEQTLQIPLLDSHSGEAIETIPNFLREYGASLLVTD 121
Query: 128 FSPLREIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEY 187
FSPLRE+++ K++IC RV V+IHEVDAHN+VP WVASEKLEYSA+T+RGKINKLLPEY
Sbjct: 122 FSPLREVQKWKEEICKRVGKKVSIHEVDAHNIVPTWVASEKLEYSARTIRGKINKLLPEY 181
Query: 188 LIDYPMLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDG 247
LID+P L+ P KW GT QSIDWD +I VLR+GAEVPEI WCESGE+AA+E+L GSK+G
Sbjct: 182 LIDFPTLQPPSIKWAGTNQSIDWDDLITEVLREGAEVPEIKWCESGENAAVEILMGSKNG 241
Query: 248 FLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEE 307
FLTKRLKNY TDRNNPLKP ALSGLSPYLHFGQISAQRCALEA+K RK CP+A+D FLEE
Sbjct: 242 FLTKRLKNYSTDRNNPLKPGALSGLSPYLHFGQISAQRCALEAKKNRKNCPQAVDVFLEE 301
Query: 308 LIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPV 365
LIVRRELADNFCFYQP Y+SL+GAWEWARK+L DHASDKREHIYTKEQ E AQTADP+
Sbjct: 302 LIVRRELADNFCFYQPRYNSLQGAWEWARKTLMDHASDKREHIYTKEQLENAQTADPL 359
>gi|147862663|emb|CAN79335.1| hypothetical protein VITISV_026088 [Vitis vinifera]
Length = 514
Score = 577 bits (1487), Expect = e-162, Method: Compositional matrix adjust.
Identities = 279/371 (75%), Positives = 314/371 (84%), Gaps = 7/371 (1%)
Query: 2 ASLTPPSTAVQPGRIRVLKQGSLDKKR--GPVVYWMFRDQRVRDNWALIHAVDQANKNNV 59
+S S+ VQ GRIRVLK+GS R GPVVYWMFRDQR+RDNWALIHAVDQANK NV
Sbjct: 5 SSALNKSSMVQQGRIRVLKEGSTPSGRDAGPVVYWMFRDQRLRDNWALIHAVDQANKANV 64
Query: 60 PVAVAFNLFDQFLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNF---- 115
PVA+AFNLFDQFLGAKARQLGFMLRGLRLL R++E+T QI FFLFQ + +
Sbjct: 65 PVAIAFNLFDQFLGAKARQLGFMLRGLRLLHRDLEQTLQIPFFLFQAYTFEISASLLDSH 124
Query: 116 -VRECGASLLVTDFSPLREIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAK 174
V E GASLLVTDFSPLRE+++ K++IC RV V+IHEVDAHN+VP WVASEKLEYSA+
Sbjct: 125 SVWEYGASLLVTDFSPLREVQKWKEEICKRVGKKVSIHEVDAHNIVPTWVASEKLEYSAR 184
Query: 175 TLRGKINKLLPEYLIDYPMLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGE 234
T+RGKINKLLPEYLID+P L+ P KW GT QSIDWD +I VLR+GAEVPEI WCESGE
Sbjct: 185 TIRGKINKLLPEYLIDFPTLQPPSIKWAGTNQSIDWDDLITEVLREGAEVPEIKWCESGE 244
Query: 235 DAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKAR 294
+AA+E+L GSK+GFLTKRLKNY TDRNNPLKP ALSGLSPYLHFGQISAQRCALEA+K +
Sbjct: 245 NAAVEILMGSKNGFLTKRLKNYSTDRNNPLKPGALSGLSPYLHFGQISAQRCALEAKKIQ 304
Query: 295 KLCPEAIDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKE 354
K CP+A+D FLEELIVRRELADNFCFYQP Y+SL+GAWEWARK+L DHASDKREHIYTKE
Sbjct: 305 KNCPQAVDVFLEELIVRRELADNFCFYQPRYNSLQGAWEWARKTLMDHASDKREHIYTKE 364
Query: 355 QFEKAQTADPV 365
Q E AQTADP+
Sbjct: 365 QLENAQTADPL 375
>gi|449459676|ref|XP_004147572.1| PREDICTED: deoxyribodipyrimidine photo-lyase-like [Cucumis sativus]
gi|449517475|ref|XP_004165771.1| PREDICTED: deoxyribodipyrimidine photo-lyase-like [Cucumis sativus]
gi|13383259|dbj|BAB39480.1| CPD photolyase [Cucumis sativus]
gi|20387244|dbj|BAB91322.1| CPD photolyase [Cucumis sativus]
Length = 489
Score = 575 bits (1481), Expect = e-161, Method: Compositional matrix adjust.
Identities = 274/358 (76%), Positives = 308/358 (86%), Gaps = 2/358 (0%)
Query: 8 STAVQPGRIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNL 67
S +VQP R RVLK G+ GPVVYWMFRDQRV+DNWALIHAVD+AN+ NVPVAVAFNL
Sbjct: 6 SNSVQPCRFRVLKDGT--GSLGPVVYWMFRDQRVKDNWALIHAVDEANRANVPVAVAFNL 63
Query: 68 FDQFLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTD 127
FD+FLGAK+RQLGFMLRGL+ LQ +I+ET QI FFLFQGEAE IPNF+RECGASLLVTD
Sbjct: 64 FDRFLGAKSRQLGFMLRGLQQLQHDIQETLQIPFFLFQGEAEQTIPNFIRECGASLLVTD 123
Query: 128 FSPLREIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEY 187
FSPLRE+R+CK++IC RV +SV +HEVDAHNVVP WVASEKLEYSAKTLRGKINK LP+Y
Sbjct: 124 FSPLREVRKCKEEICKRVEESVKVHEVDAHNVVPTWVASEKLEYSAKTLRGKINKKLPDY 183
Query: 188 LIDYPMLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDG 247
LIDYP + P KW + IDWD +I LRKGA+VPE+ WC+ GE AAMEVL GSKDG
Sbjct: 184 LIDYPSMVIPTRKWPSADKFIDWDRLIDDNLRKGADVPELEWCKPGEKAAMEVLMGSKDG 243
Query: 248 FLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEE 307
FLTKRLK Y DRNNPLKP+ LSGLSPYLHFGQISAQRCALEAR RKL P+A+D FLEE
Sbjct: 244 FLTKRLKGYAIDRNNPLKPKGLSGLSPYLHFGQISAQRCALEARSIRKLNPQAVDVFLEE 303
Query: 308 LIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPV 365
LIVRRELADN+C+YQP+YDSL GAWEWARK+L DHASDKRE+IYT+EQ EKAQTADP+
Sbjct: 304 LIVRRELADNYCYYQPHYDSLLGAWEWARKTLMDHASDKREYIYTREQLEKAQTADPL 361
>gi|18391386|ref|NP_563906.1| photolyase 1 [Arabidopsis thaliana]
gi|14334576|gb|AAK59467.1| unknown protein [Arabidopsis thaliana]
gi|21280945|gb|AAM44957.1| unknown protein [Arabidopsis thaliana]
gi|332190751|gb|AEE28872.1| photolyase 1 [Arabidopsis thaliana]
Length = 490
Score = 568 bits (1463), Expect = e-159, Method: Compositional matrix adjust.
Identities = 268/365 (73%), Positives = 312/365 (85%), Gaps = 6/365 (1%)
Query: 8 STAVQPGRIRVLKQGS---LDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVA 64
+ +VQPGRIR+LK+GS LD+ GPVVYWMFRDQR++DNWALIHAVD AN+ N PVAV
Sbjct: 4 TVSVQPGRIRILKKGSWQPLDQTVGPVVYWMFRDQRLKDNWALIHAVDLANRTNAPVAVV 63
Query: 65 FNLFDQFLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLL 124
FNLFDQFL AKARQLGFML+GLR L I+ + QI FFL QG+A++ IPNF+ ECGAS L
Sbjct: 64 FNLFDQFLDAKARQLGFMLKGLRQLHHQID-SLQIPFFLLQGDAKETIPNFLTECGASHL 122
Query: 125 VTDFSPLREIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLL 184
VTDFSPLREIRRCKD++ R SDS+ IHEVDAHNVVP+W AS KLEYSA+T+RGKINKLL
Sbjct: 123 VTDFSPLREIRRCKDEVVKRTSDSLAIHEVDAHNVVPMWAASSKLEYSARTIRGKINKLL 182
Query: 185 PEYLIDYPMLEQPIEKWTGT--RQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLK 242
P+YLI++P LE P +KWTG ++ +DWDS+I V+R+GAEVPEI WC GEDA +EVL
Sbjct: 183 PDYLIEFPKLEPPKKKWTGMMDKKLVDWDSLIDKVVREGAEVPEIEWCVPGEDAGIEVLM 242
Query: 243 GSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAID 302
G+KDGFLTKRLKNY TDRNNP+KP+ALSGLSPYLHFGQ+SAQRCALEARK R P+A+D
Sbjct: 243 GNKDGFLTKRLKNYSTDRNNPIKPKALSGLSPYLHFGQVSAQRCALEARKVRSTSPQAVD 302
Query: 303 TFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTA 362
TFLEELIVRREL+DNFC+YQP+YDSLKGAWEWARKSL DHASDKREHIY+ EQ EK TA
Sbjct: 303 TFLEELIVRRELSDNFCYYQPHYDSLKGAWEWARKSLMDHASDKREHIYSLEQLEKGLTA 362
Query: 363 DPVSI 367
DP+ +
Sbjct: 363 DPLEM 367
>gi|30682738|ref|NP_849651.1| photolyase 1 [Arabidopsis thaliana]
gi|75201504|sp|Q9SB00.1|PHR_ARATH RecName: Full=Deoxyribodipyrimidine photo-lyase; AltName:
Full=AtCPDII; AltName: Full=DNA photolyase; AltName:
Full=Photoreactivating enzyme 1; AltName: Full=Protein
UV RESISTANCE 2
gi|4239819|dbj|BAA74701.1| PHR1 [Arabidopsis thaliana]
gi|332190750|gb|AEE28871.1| photolyase 1 [Arabidopsis thaliana]
Length = 496
Score = 568 bits (1463), Expect = e-159, Method: Compositional matrix adjust.
Identities = 268/363 (73%), Positives = 311/363 (85%), Gaps = 6/363 (1%)
Query: 8 STAVQPGRIRVLKQGS---LDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVA 64
+ +VQPGRIR+LK+GS LD+ GPVVYWMFRDQR++DNWALIHAVD AN+ N PVAV
Sbjct: 4 TVSVQPGRIRILKKGSWQPLDQTVGPVVYWMFRDQRLKDNWALIHAVDLANRTNAPVAVV 63
Query: 65 FNLFDQFLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLL 124
FNLFDQFL AKARQLGFML+GLR L I+ + QI FFL QG+A++ IPNF+ ECGAS L
Sbjct: 64 FNLFDQFLDAKARQLGFMLKGLRQLHHQID-SLQIPFFLLQGDAKETIPNFLTECGASHL 122
Query: 125 VTDFSPLREIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLL 184
VTDFSPLREIRRCKD++ R SDS+ IHEVDAHNVVP+W AS KLEYSA+T+RGKINKLL
Sbjct: 123 VTDFSPLREIRRCKDEVVKRTSDSLAIHEVDAHNVVPMWAASSKLEYSARTIRGKINKLL 182
Query: 185 PEYLIDYPMLEQPIEKWTGT--RQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLK 242
P+YLI++P LE P +KWTG ++ +DWDS+I V+R+GAEVPEI WC GEDA +EVL
Sbjct: 183 PDYLIEFPKLEPPKKKWTGMMDKKLVDWDSLIDKVVREGAEVPEIEWCVPGEDAGIEVLM 242
Query: 243 GSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAID 302
G+KDGFLTKRLKNY TDRNNP+KP+ALSGLSPYLHFGQ+SAQRCALEARK R P+A+D
Sbjct: 243 GNKDGFLTKRLKNYSTDRNNPIKPKALSGLSPYLHFGQVSAQRCALEARKVRSTSPQAVD 302
Query: 303 TFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTA 362
TFLEELIVRREL+DNFC+YQP+YDSLKGAWEWARKSL DHASDKREHIY+ EQ EK TA
Sbjct: 303 TFLEELIVRRELSDNFCYYQPHYDSLKGAWEWARKSLMDHASDKREHIYSLEQLEKGLTA 362
Query: 363 DPV 365
DP+
Sbjct: 363 DPL 365
>gi|8778649|gb|AAF79657.1|AC025416_31 F5O11.9 [Arabidopsis thaliana]
Length = 505
Score = 567 bits (1462), Expect = e-159, Method: Compositional matrix adjust.
Identities = 268/363 (73%), Positives = 311/363 (85%), Gaps = 6/363 (1%)
Query: 8 STAVQPGRIRVLKQGS---LDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVA 64
+ +VQPGRIR+LK+GS LD+ GPVVYWMFRDQR++DNWALIHAVD AN+ N PVAV
Sbjct: 4 TVSVQPGRIRILKKGSWQPLDQTVGPVVYWMFRDQRLKDNWALIHAVDLANRTNAPVAVV 63
Query: 65 FNLFDQFLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLL 124
FNLFDQFL AKARQLGFML+GLR L I+ + QI FFL QG+A++ IPNF+ ECGAS L
Sbjct: 64 FNLFDQFLDAKARQLGFMLKGLRQLHHQID-SLQIPFFLLQGDAKETIPNFLTECGASHL 122
Query: 125 VTDFSPLREIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLL 184
VTDFSPLREIRRCKD++ R SDS+ IHEVDAHNVVP+W AS KLEYSA+T+RGKINKLL
Sbjct: 123 VTDFSPLREIRRCKDEVVKRTSDSLAIHEVDAHNVVPMWAASSKLEYSARTIRGKINKLL 182
Query: 185 PEYLIDYPMLEQPIEKWTGT--RQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLK 242
P+YLI++P LE P +KWTG ++ +DWDS+I V+R+GAEVPEI WC GEDA +EVL
Sbjct: 183 PDYLIEFPKLEPPKKKWTGMMDKKLVDWDSLIDKVVREGAEVPEIEWCVPGEDAGIEVLM 242
Query: 243 GSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAID 302
G+KDGFLTKRLKNY TDRNNP+KP+ALSGLSPYLHFGQ+SAQRCALEARK R P+A+D
Sbjct: 243 GNKDGFLTKRLKNYSTDRNNPIKPKALSGLSPYLHFGQVSAQRCALEARKVRSTSPQAVD 302
Query: 303 TFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTA 362
TFLEELIVRREL+DNFC+YQP+YDSLKGAWEWARKSL DHASDKREHIY+ EQ EK TA
Sbjct: 303 TFLEELIVRRELSDNFCYYQPHYDSLKGAWEWARKSLMDHASDKREHIYSLEQLEKGLTA 362
Query: 363 DPV 365
DP+
Sbjct: 363 DPL 365
>gi|1617219|emb|CAA67683.1| CPD photolyase [Arabidopsis thaliana]
gi|2984707|gb|AAC08008.1| type II CPD photolyase PHR1 [Arabidopsis thaliana]
Length = 496
Score = 563 bits (1451), Expect = e-158, Method: Compositional matrix adjust.
Identities = 266/363 (73%), Positives = 309/363 (85%), Gaps = 6/363 (1%)
Query: 8 STAVQPGRIRVLKQGSL---DKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVA 64
+ +VQPGRIR+LK+GS D+ GPVVYWMFRDQR++DNWALIHAVD AN+ N PVAV
Sbjct: 4 TVSVQPGRIRILKKGSWQPSDQTVGPVVYWMFRDQRLKDNWALIHAVDLANRTNAPVAVV 63
Query: 65 FNLFDQFLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLL 124
FNLFDQFL AKARQLGFML+GLR L I+ + QI FFL QG+A++ IPNF+ ECGAS L
Sbjct: 64 FNLFDQFLDAKARQLGFMLKGLRQLHHQID-SLQIPFFLLQGDAKETIPNFLTECGASHL 122
Query: 125 VTDFSPLREIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLL 184
VTDFSPLREIRRCKD++ R SDS+ IHEVDAHNVVP+W AS KLEYSA+T+RGKINKLL
Sbjct: 123 VTDFSPLREIRRCKDEVVKRTSDSLAIHEVDAHNVVPMWAASSKLEYSARTIRGKINKLL 182
Query: 185 PEYLIDYPMLEQPIEKWTGT--RQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLK 242
P+YLI++P LE P +KWTG ++ +DWDS+I V+R+GAEVPEI WC GEDA +EVL
Sbjct: 183 PDYLIEFPKLEPPKKKWTGMMDKKLVDWDSLIDKVVREGAEVPEIEWCVPGEDAGIEVLM 242
Query: 243 GSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAID 302
G+KDGFLTKRLKNY TDRNNP+KP+ALSGLSPYLHFGQ+SAQRCALEARK R P+A+D
Sbjct: 243 GNKDGFLTKRLKNYSTDRNNPIKPKALSGLSPYLHFGQVSAQRCALEARKVRSTSPQAVD 302
Query: 303 TFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTA 362
FLEELIVRREL+DNFC+YQP+YDSLKGAWEWARKSL DHASDKREHIY+ EQ EK TA
Sbjct: 303 IFLEELIVRRELSDNFCYYQPHYDSLKGAWEWARKSLMDHASDKREHIYSLEQLEKGLTA 362
Query: 363 DPV 365
DP+
Sbjct: 363 DPL 365
>gi|297849606|ref|XP_002892684.1| hypothetical protein ARALYDRAFT_471385 [Arabidopsis lyrata subsp.
lyrata]
gi|297338526|gb|EFH68943.1| hypothetical protein ARALYDRAFT_471385 [Arabidopsis lyrata subsp.
lyrata]
Length = 496
Score = 561 bits (1446), Expect = e-157, Method: Compositional matrix adjust.
Identities = 266/363 (73%), Positives = 306/363 (84%), Gaps = 6/363 (1%)
Query: 8 STAVQPGRIRVLKQGSL---DKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVA 64
+ +VQ GRIR+LK+GS D+ GPVVYWMFRDQR+ DNWALIHAVD AN+ N PVAV
Sbjct: 4 AISVQTGRIRILKKGSWQPSDQTVGPVVYWMFRDQRLNDNWALIHAVDLANRTNAPVAVV 63
Query: 65 FNLFDQFLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLL 124
FNLFDQFLGAKARQLGFML+GLR L I+ + QI FFL QG+A++ IP F+ ECGAS L
Sbjct: 64 FNLFDQFLGAKARQLGFMLKGLRQLHHQID-SLQIPFFLLQGDAKETIPKFIAECGASHL 122
Query: 125 VTDFSPLREIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLL 184
VTDFSPLREIR CKD++ R SDS+ IHEVDAHN+VP+W AS KLEYSA+T+RGKINKLL
Sbjct: 123 VTDFSPLREIRSCKDEVVKRTSDSLAIHEVDAHNIVPMWAASGKLEYSARTIRGKINKLL 182
Query: 185 PEYLIDYPMLEQPIEKWTGT--RQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLK 242
P+YLI++P LE P +KWTG ++ +DWDS+I V+R+GAEVPEI WC GEDA MEVL
Sbjct: 183 PDYLIEFPKLELPKKKWTGMMDKKMVDWDSLIDKVVREGAEVPEIEWCVPGEDAGMEVLM 242
Query: 243 GSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAID 302
G KDGFLTKRLKNY DRNNP+KP+ALSGLSPYLHFGQISAQRCALEARK R P+A+D
Sbjct: 243 GKKDGFLTKRLKNYSADRNNPVKPKALSGLSPYLHFGQISAQRCALEARKVRNTSPQAVD 302
Query: 303 TFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTA 362
TFLEELIVRREL+DNFC+YQP+YDSLKGAWEWARKSL DHASDKREHIY+ EQ EK QTA
Sbjct: 303 TFLEELIVRRELSDNFCYYQPHYDSLKGAWEWARKSLMDHASDKREHIYSLEQLEKGQTA 362
Query: 363 DPV 365
DP+
Sbjct: 363 DPL 365
>gi|30421116|gb|AAP31406.1| CPD photolyase [Spinacia oleracea]
gi|30421159|gb|AAP31407.1| CPD photolyase [Spinacia oleracea]
Length = 491
Score = 550 bits (1416), Expect = e-154, Method: Compositional matrix adjust.
Identities = 265/365 (72%), Positives = 297/365 (81%), Gaps = 2/365 (0%)
Query: 1 MASLTPPSTAVQPGRIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVP 60
M S P+T VQP RIRVLK GS G VVYWMFRDQRVRDNWALIHAVD+ANK N P
Sbjct: 1 MTSKPVPTTTVQPERIRVLKPGS--NPNGAVVYWMFRDQRVRDNWALIHAVDEANKRNAP 58
Query: 61 VAVAFNLFDQFLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECG 120
VAVAFNLFD F GA ARQLGFMLRGL+LLQ ++ + I FFLFQGE + IP F+ ECG
Sbjct: 59 VAVAFNLFDGFKGANARQLGFMLRGLKLLQASLHNSLHIPFFLFQGEVVETIPKFLVECG 118
Query: 121 ASLLVTDFSPLREIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKI 180
ASLLVTDF+PLREIR K+++C RV DSV+IHEVDAHNVVPVW AS KLEY A+T+R KI
Sbjct: 119 ASLLVTDFTPLREIRGFKEELCKRVGDSVSIHEVDAHNVVPVWEASSKLEYGARTIRTKI 178
Query: 181 NKLLPEYLIDYPMLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEV 240
NKLLP YL DYP+L+ P W + I WD +I L+KGAEVPEI WC+ GE AA+EV
Sbjct: 179 NKLLPTYLTDYPILQPPNCSWESSSPVIQWDQLIEDRLKKGAEVPEIDWCKPGETAALEV 238
Query: 241 LKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEA 300
LKGS++GFLTKRLK+Y TDRN PLKP ALSGLSPYLHFGQISAQRCA EAR RK+ PEA
Sbjct: 239 LKGSQNGFLTKRLKSYATDRNIPLKPGALSGLSPYLHFGQISAQRCAFEARNVRKVAPEA 298
Query: 301 IDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQ 360
+D F EELIVRRELADNFC+YQPNYDSL GAWEWARK+L DHASDKREH+YT+EQ EKAQ
Sbjct: 299 VDAFTEELIVRRELADNFCYYQPNYDSLMGAWEWARKTLMDHASDKREHLYTREQLEKAQ 358
Query: 361 TADPV 365
TADP+
Sbjct: 359 TADPL 363
>gi|357481903|ref|XP_003611237.1| CPD photolyase [Medicago truncatula]
gi|355512572|gb|AES94195.1| CPD photolyase [Medicago truncatula]
Length = 517
Score = 540 bits (1391), Expect = e-151, Method: Compositional matrix adjust.
Identities = 264/382 (69%), Positives = 304/382 (79%), Gaps = 23/382 (6%)
Query: 5 TPPST--AVQPGRIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVA 62
+PPS +V GRIR LK+GS K GPVVYWMFRDQR++DNWALIHAV QANK VPVA
Sbjct: 6 SPPSMLPSVNSGRIRTLKEGS--GKTGPVVYWMFRDQRLKDNWALIHAVHQANKAKVPVA 63
Query: 63 VAFNLFDQFLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGAS 122
V FNLFD FLGAKAR LGFML+GLR L ++ + I FFL +GEAE+ + FVRECGAS
Sbjct: 64 VVFNLFDHFLGAKARHLGFMLKGLRQLCHQLQHSLHIPFFLVRGEAEETVSKFVRECGAS 123
Query: 123 LLVTDFSPLREIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINK 182
LLVTD SPLRE+++CK +IC RVSD VT+HEVDAHNVVP+WVASEKLEYSA+T+RGKINK
Sbjct: 124 LLVTDMSPLREVKKCKAEICERVSDLVTVHEVDAHNVVPLWVASEKLEYSARTIRGKINK 183
Query: 183 LLPEYLIDYPMLEQPIEKWTGTR-QSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVL 241
L +YL+D+P +E P KW T IDWD IIA VLR G+EVPE+ WCE GE AAMEVL
Sbjct: 184 KLSDYLVDFPDVEPPNTKWVITEDHVIDWDDIIAQVLRSGSEVPEVDWCEPGEIAAMEVL 243
Query: 242 KGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPE-- 299
GSK+GFLTKRL+NY TDRNNP KP ALSGLSPYLHFGQISAQRCALEARK R P+
Sbjct: 244 MGSKNGFLTKRLRNYSTDRNNPCKPTALSGLSPYLHFGQISAQRCALEARKLRASYPQVC 303
Query: 300 ----------------AIDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHA 343
A+DTFLEELIVRRELADNFC+YQP+YDS++GAWEWARK+L DHA
Sbjct: 304 FTMLFMLLHFVFPKKVAVDTFLEELIVRRELADNFCYYQPHYDSIQGAWEWARKTLLDHA 363
Query: 344 SDKREHIYTKEQFEKAQTADPV 365
SDKR+H+YT+EQ EKA+TADP+
Sbjct: 364 SDKRQHVYTREQLEKAKTADPL 385
>gi|351727839|ref|NP_001238710.1| CPD photolyase [Glycine max]
gi|169159213|dbj|BAG12106.1| CPD photolyase [Glycine max]
Length = 500
Score = 538 bits (1385), Expect = e-150, Method: Compositional matrix adjust.
Identities = 263/369 (71%), Positives = 298/369 (80%), Gaps = 5/369 (1%)
Query: 1 MASLTPPSTAVQPGRIRVLKQGSL-DKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNV 59
MAS P T VQ GR+R LK+GS + GPVVYWMFRDQRV DNWALIHAV +ANK NV
Sbjct: 1 MASTASPMT-VQAGRVRTLKEGSRGESGLGPVVYWMFRDQRVTDNWALIHAVAEANKANV 59
Query: 60 PVAVAFNLFDQFLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVREC 119
PVAV FNLF FLGAK+R LGFMLRGLR L ++ FLFQGEA++ +P F+REC
Sbjct: 60 PVAVVFNLFHTFLGAKSRHLGFMLRGLRQLCHRMQHYSSNPLFLFQGEADETVPKFLREC 119
Query: 120 GASLLVTDFSPLREIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGK 179
GASLLVTDFSPLRE+RRCK++IC RVSDSV +HEVDAHNVVP+WVAS+KLEYSA+T+R K
Sbjct: 120 GASLLVTDFSPLREVRRCKEEICKRVSDSVAVHEVDAHNVVPLWVASDKLEYSARTIRAK 179
Query: 180 INKLLPEYLIDYP--MLEQPIEKWTGTR-QSIDWDSIIAAVLRKGAEVPEIGWCESGEDA 236
I K L +YL+D+P +E P KW T SIDWD +IA VLR+GAEVPE+ WCE GE A
Sbjct: 180 ITKRLSDYLVDFPDIEVEPPAGKWVATENHSIDWDDLIADVLRRGAEVPEVDWCEPGEIA 239
Query: 237 AMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKL 296
A EVL GSK+GFLTKRLK Y DRNNP P ALSGLSPYLHFGQISAQRCALEARK R
Sbjct: 240 ASEVLMGSKNGFLTKRLKGYSLDRNNPCHPNALSGLSPYLHFGQISAQRCALEARKRRNS 299
Query: 297 CPEAIDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQF 356
P+AID FLEELIVRRELADN+CFYQP+YDSLKGAW WA+ +L +HA+DKREHIYTKEQ
Sbjct: 300 HPQAIDAFLEELIVRRELADNYCFYQPHYDSLKGAWAWAQNTLTEHATDKREHIYTKEQL 359
Query: 357 EKAQTADPV 365
EKAQTADP+
Sbjct: 360 EKAQTADPL 368
>gi|33330687|gb|AAQ10672.1| type II CPD photolyase [Stellaria longipes]
Length = 499
Score = 523 bits (1346), Expect = e-146, Method: Compositional matrix adjust.
Identities = 254/366 (69%), Positives = 297/366 (81%), Gaps = 2/366 (0%)
Query: 1 MASLTPPSTAVQPGRIRVLKQGSLD-KKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNV 59
M + P QPGRIR+LKQ + ++G VVYWM R+QR +DNW LIHAV++ANK NV
Sbjct: 1 MTTHPNPIPLTQPGRIRILKQAKPNPTQKGAVVYWMLREQRAQDNWRLIHAVNEANKMNV 60
Query: 60 PVAVAFNLFDQFLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVREC 119
P+AV FNLFD F GAKAR LGFMLRGL+LL N+ + FFLFQGE + IP F+ EC
Sbjct: 61 PIAVTFNLFDAFKGAKARHLGFMLRGLKLLHSNLLLQ-HLPFFLFQGEVVETIPKFLIEC 119
Query: 120 GASLLVTDFSPLREIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGK 179
GASLLVTDFSPLREIR+ K+++C + DSV+IHEVDAHNVVPVW AS KLEY A+T+R K
Sbjct: 120 GASLLVTDFSPLREIRKYKEELCKIIDDSVSIHEVDAHNVVPVWEASSKLEYGARTIRSK 179
Query: 180 INKLLPEYLIDYPMLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAME 239
INKLLP YLID+P L P ++W + IDWD +I +++GAEVPEI WCE GE AA+E
Sbjct: 180 INKLLPTYLIDFPTLTSPNQRWPSSPPDIDWDGLIEERIKQGAEVPEIDWCEPGETAALE 239
Query: 240 VLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPE 299
VL G KDGFLTKRLK Y TDRN PLKPRALSGLSPYLHFGQISAQRCALEAR+ RKL PE
Sbjct: 240 VLMGEKDGFLTKRLKKYGTDRNIPLKPRALSGLSPYLHFGQISAQRCALEARQVRKLSPE 299
Query: 300 AIDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKA 359
++DTFLEELIVRRELADNFC+YQP+YDS+KGAW+WARK+L DHASDKREH+YT+EQ EKA
Sbjct: 300 SVDTFLEELIVRRELADNFCYYQPHYDSIKGAWDWARKTLMDHASDKREHLYTREQLEKA 359
Query: 360 QTADPV 365
QTADP+
Sbjct: 360 QTADPL 365
>gi|33415319|gb|AAQ18175.1| type II CPD DNA photolyase [Pityrogramma austroamericana]
Length = 546
Score = 437 bits (1124), Expect = e-120, Method: Compositional matrix adjust.
Identities = 221/397 (55%), Positives = 273/397 (68%), Gaps = 42/397 (10%)
Query: 8 STAVQPGRIRVLKQGSLDK-KRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFN 66
ST V PGR+R+LKQ S + + GPVVYWM RDQR RDNWAL++A A + P+ VAFN
Sbjct: 17 STEVNPGRVRLLKQASQEVVQGGPVVYWMSRDQRSRDNWALLYAAQCAQQQGGPLCVAFN 76
Query: 67 LFDQFLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVT 126
L D FL A+AR GFMLRGLR++ N+ + I FFL +G+AE+NIP FV CGAS+LV
Sbjct: 77 LVDSFLHAEARHFGFMLRGLRVVHHNLS-SLGIPFFLLRGKAEENIPAFVERCGASILVM 135
Query: 127 DFSPLREIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPE 186
DFSPLR R ++ +C V SV++ EVDAHNVVPVWVAS+K EY+A+T+RGKI + LPE
Sbjct: 136 DFSPLRIGRVWREGVCKAVPSSVSVFEVDAHNVVPVWVASDKQEYAARTIRGKIQRHLPE 195
Query: 187 YLIDYPMLEQPIEKWTGTR-QSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKG-- 243
YL++YP L PI WT + +IDWD +I V +KGAE E+ WCES EDAAME+L G
Sbjct: 196 YLVEYPPLVAPIHTWTLEKPANIDWDLLIDEVAKKGAEGLEVKWCESREDAAMELLLGKK 255
Query: 244 -------------------------------------SKDGFLTKRLKNYPTDRNNPLKP 266
K GFLT R++NY DRN+P KP
Sbjct: 256 KGFLTTRIRNYADDRNDPSKPAGLSGLSPYLHYGQVLKKKGFLTTRIRNYADDRNDPSKP 315
Query: 267 RALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVRRELADNFCFYQPNYD 326
LSGLSPYLH+GQ+ AQRCALE RK R+ +AIDTFLEEL++RRELADNFC+YQPNYD
Sbjct: 316 AGLSGLSPYLHYGQVLAQRCALEGRKLRRSHTKAIDTFLEELVIRRELADNFCYYQPNYD 375
Query: 327 SLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTAD 363
SL+GA+EWAR +L HASDKREH+YT+E+ EK +T D
Sbjct: 376 SLQGAYEWARSTLLAHASDKREHLYTQEELEKGKTHD 412
>gi|302780533|ref|XP_002972041.1| hypothetical protein SELMODRAFT_96351 [Selaginella moellendorffii]
gi|300160340|gb|EFJ26958.1| hypothetical protein SELMODRAFT_96351 [Selaginella moellendorffii]
Length = 510
Score = 429 bits (1104), Expect = e-118, Method: Compositional matrix adjust.
Identities = 209/361 (57%), Positives = 265/361 (73%), Gaps = 9/361 (2%)
Query: 8 STAVQPGRIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNL 67
S V P R+RVL QG + GPVVYWM RDQR RDNWAL++A +QA K + PVAV FNL
Sbjct: 41 SIGVNPRRVRVLSQGD-ESHSGPVVYWMSRDQRSRDNWALLYAAEQARKRDTPVAVVFNL 99
Query: 68 FDQFLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTD 127
+ FL AKAR GF+LRGLR++++N+E+ I FFL +G ED IP FV C AS+LV D
Sbjct: 100 VESFLEAKARHFGFLLRGLRVVEKNLEK-LGIAFFLLRGRPEDTIPAFVEACNASILVLD 158
Query: 128 FSPLREIRRCKDKICNRVSDSVT--IHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLP 185
FSPLR R + + +R+ T +HEVDAHNVVPVW+AS+KLEY+A+T+R KI + LP
Sbjct: 159 FSPLRIGRTWRTGVVSRLGADTTTAVHEVDAHNVVPVWIASDKLEYAARTIRLKIQRQLP 218
Query: 186 EYLIDYPMLEQPIEKWTGTRQS-IDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGS 244
E+L+D+P LE + W G Q IDWDS+I VLR G EVPE+ WCE GED A+E L G
Sbjct: 219 EFLVDFPTLEPFSKPWPGVAQEKIDWDSLIDEVLRAGDEVPEVDWCEPGEDIALERLAG- 277
Query: 245 KDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTF 304
FL+ RL+ Y +RN+P K LS LSPY H+GQ+S QRCA E RKARKL +++D+F
Sbjct: 278 ---FLSSRLQRYSAERNDPSKLERLSDLSPYFHYGQLSPQRCAFEVRKARKLHMQSVDSF 334
Query: 305 LEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADP 364
LEELI+RREL+DNFC+YQPNYD+++GAWEWAR SL +HA+DKREHIYT++Q E +T D
Sbjct: 335 LEELIIRRELSDNFCYYQPNYDNIQGAWEWARNSLLEHANDKREHIYTRQQLEDGKTKDK 394
Query: 365 V 365
+
Sbjct: 395 L 395
>gi|168024934|ref|XP_001764990.1| PHR1 AtPHR1-like type 2 CPD DNA photolyase [Physcomitrella patens
subsp. patens]
gi|162683799|gb|EDQ70206.1| PHR1 AtPHR1-like type 2 CPD DNA photolyase [Physcomitrella patens
subsp. patens]
Length = 495
Score = 424 bits (1090), Expect = e-116, Method: Compositional matrix adjust.
Identities = 205/353 (58%), Positives = 263/353 (74%), Gaps = 5/353 (1%)
Query: 12 QPGRIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQF 71
GRI+ LK G + + GPVVYWM RD R RDNWAL+HAV QA + VPVAVAFNL + F
Sbjct: 12 HAGRIQNLKLG--ENEHGPVVYWMSRDHRSRDNWALLHAVHQAREKGVPVAVAFNLVESF 69
Query: 72 LGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPL 131
L A+AR GFMLRGLR++++N++ I FFLF+G + IP F+++C ASLLV D+S L
Sbjct: 70 LEARARHFGFMLRGLRVVEQNLK-AVNIPFFLFRGNPVETIPEFLKKCNASLLVMDYSSL 128
Query: 132 REIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDY 191
R R+ ++ +C V+ SV + EVDAHNVVPVW AS+KLEY A+T+R KIN L E+L +Y
Sbjct: 129 RIGRQWRNGVCENVASSVAVAEVDAHNVVPVWRASDKLEYGARTIRNKINNQLAEFLNEY 188
Query: 192 PMLEQPIEKW-TGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLT 250
P+LE P + W G +IDWD++IA V R G+EVPE+ WCE+GEDAA+E L G GF+
Sbjct: 189 PVLENPGKPWEAGAPDTIDWDALIAEVSRFGSEVPEVTWCEAGEDAALEALAGKSKGFVN 248
Query: 251 KRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIV 310
R++NY +RN+P KP LSGLSPYLH+G ISAQRCALEARK RK+ +++D FLEELIV
Sbjct: 249 IRIRNY-VNRNDPSKPTGLSGLSPYLHYGHISAQRCALEARKVRKVHTKSVDAFLEELIV 307
Query: 311 RRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTAD 363
R LA+NFC YQPNYD+LKGAW WA++SL+ HA DKRE +YT+ + E +T D
Sbjct: 308 RGGLAENFCHYQPNYDNLKGAWGWAQESLRIHAKDKREVVYTESELEAGKTHD 360
>gi|302781626|ref|XP_002972587.1| hypothetical protein SELMODRAFT_97206 [Selaginella moellendorffii]
gi|300160054|gb|EFJ26673.1| hypothetical protein SELMODRAFT_97206 [Selaginella moellendorffii]
Length = 510
Score = 423 bits (1088), Expect = e-116, Method: Compositional matrix adjust.
Identities = 206/361 (57%), Positives = 265/361 (73%), Gaps = 9/361 (2%)
Query: 8 STAVQPGRIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNL 67
S V P R+RVL+QG + GPVVYWM RDQR RDNWAL++A +QA K + PVAV FNL
Sbjct: 41 SIGVNPRRVRVLRQGD-ESHSGPVVYWMSRDQRSRDNWALLYAAEQARKRDTPVAVVFNL 99
Query: 68 FDQFLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTD 127
+ FL AKAR GF+LRGLR++++N+++ I FFL +G ED IP+FV C AS+LV D
Sbjct: 100 VESFLEAKARHFGFLLRGLRVVEKNLDK-LGIAFFLLRGRPEDTIPSFVEACNASILVLD 158
Query: 128 FSPLREIRRCKDKICNRVSDSVT--IHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLP 185
FS LR R + + +R+ T +HEVDAHNVVPVW+AS+KLEY+A+T+R KI + LP
Sbjct: 159 FSSLRIGRTWRTGVVSRLGADTTTAVHEVDAHNVVPVWIASDKLEYAARTIRLKIQRQLP 218
Query: 186 EYLIDYPMLEQPIEKWTGTRQS-IDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGS 244
E+L+D+P LE + W G Q IDWDS+I VLR G EVPE+ WCE GED A+E L
Sbjct: 219 EFLVDFPTLEPFSKPWPGVAQEKIDWDSLIDEVLRAGDEVPEVDWCEPGEDIALERLAV- 277
Query: 245 KDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTF 304
FL+ RL+ Y +RN+P K LS LSPY H+GQ+S QRCA E RKARKL +++D+F
Sbjct: 278 ---FLSSRLQRYSAERNDPSKLERLSDLSPYFHYGQLSPQRCAFEVRKARKLHMQSVDSF 334
Query: 305 LEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADP 364
LEELI+RREL+DNFC+YQPNYD+++GAWEWAR SL +HA+DKREHIYT++Q E +T D
Sbjct: 335 LEELIIRRELSDNFCYYQPNYDNIQGAWEWARNSLLEHANDKREHIYTRQQLEDGKTKDK 394
Query: 365 V 365
+
Sbjct: 395 L 395
>gi|194702896|gb|ACF85532.1| unknown [Zea mays]
gi|414868226|tpg|DAA46783.1| TPA: hypothetical protein ZEAMMB73_845202 [Zea mays]
gi|414868227|tpg|DAA46784.1| TPA: hypothetical protein ZEAMMB73_845202 [Zea mays]
Length = 376
Score = 419 bits (1077), Expect = e-114, Method: Compositional matrix adjust.
Identities = 215/377 (57%), Positives = 267/377 (70%), Gaps = 12/377 (3%)
Query: 6 PPS--TAVQPGRIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNN--VPV 61
PP+ + V P R+R+L G GPVVYWM RDQR+ DNWAL+HA + A + P+
Sbjct: 2 PPAIPSLVHPSRVRILHPGG-SHIHGPVVYWMLRDQRLADNWALLHAAELAAASTPAAPL 60
Query: 62 AVAFNLFDQ--FLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVREC 119
A+AF LF + LGA RQLGF+LRGLR L + F L G AE +P+ VR
Sbjct: 61 AIAFTLFPRPFLLGAHLRQLGFLLRGLRRLAADAHARGLPFFLLEGGPAE--LPSLVRRL 118
Query: 120 GASLLVTDFSPLREIRRCKDKICN---RVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTL 176
GAS LV DFSPLR +R D + R + ++ +H+VDAHNVVPVW AS KLEYSAKT
Sbjct: 119 GASALVADFSPLRPVREALDAVVQELLRDAANMAVHQVDAHNVVPVWTASGKLEYSAKTF 178
Query: 177 RGKINKLLPEYLIDYPMLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDA 236
R K+NK++ EYL++YP + Q +S+DWD++I ++ + VPEI WCE GE +
Sbjct: 179 RSKVNKVINEYLVEYPEVPQWAPWCMEQPKSVDWDALINSIFSEAENVPEINWCEPGESS 238
Query: 237 AMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKL 296
AMEVL GSKDGFLTKR+KNY T RN+P KP ALS LSPYLHFG ISAQRCALEA+K R L
Sbjct: 239 AMEVLLGSKDGFLTKRIKNYDTGRNDPTKPHALSCLSPYLHFGHISAQRCALEAKKRRHL 298
Query: 297 CPEAIDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQF 356
P+++DTFLEELI+RRELADNFC+YQP YDSL GAWEWARK+L DH DKREHIYT+EQ
Sbjct: 299 SPKSVDTFLEELIIRRELADNFCYYQPQYDSLAGAWEWARKTLTDHTGDKREHIYTREQL 358
Query: 357 EKAQTADPVSIYLWMFI 373
E A+T+DPV I +++ +
Sbjct: 359 ENAKTSDPVCISIFLVL 375
>gi|195647124|gb|ACG43030.1| hypothetical protein [Zea mays]
Length = 376
Score = 418 bits (1074), Expect = e-114, Method: Compositional matrix adjust.
Identities = 214/377 (56%), Positives = 267/377 (70%), Gaps = 12/377 (3%)
Query: 6 PPS--TAVQPGRIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNN--VPV 61
PP+ + V P R+R+L G GPVVYWM RDQR+ DNWAL+HA + A + P+
Sbjct: 2 PPAIPSLVHPSRVRILHPGG-SHIHGPVVYWMLRDQRLADNWALLHAAELAAASTPAAPL 60
Query: 62 AVAFNLFDQ--FLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVREC 119
A+AF LF + LGA RQLGF+LRGLR L + F L G AE +P+ VR
Sbjct: 61 AIAFTLFPRPFLLGAHLRQLGFLLRGLRRLAADAHARGLPFFLLEGGPAE--LPSLVRRL 118
Query: 120 GASLLVTDFSPLREIRRCKDKICN---RVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTL 176
GAS LV DFSPLR +R D + R + ++ +H+VDAHNVVPVW AS KLEYSAKT
Sbjct: 119 GASALVADFSPLRPVREALDAVVQELLRDAANMAVHQVDAHNVVPVWTASGKLEYSAKTF 178
Query: 177 RGKINKLLPEYLIDYPMLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDA 236
R K+NK++ EYL++YP + Q +S+DWD++I ++ + VPEI WCE GE +
Sbjct: 179 RSKVNKVINEYLVEYPEVPQWAPWCMEQPKSVDWDALINSIFSEAENVPEINWCEPGESS 238
Query: 237 AMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKL 296
AMEVL G+KDGFLTKR+KNY T RN+P KP ALS LSPYLHFG ISAQRCALEA+K R L
Sbjct: 239 AMEVLLGNKDGFLTKRIKNYDTGRNDPTKPHALSCLSPYLHFGHISAQRCALEAKKRRHL 298
Query: 297 CPEAIDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQF 356
P+++DTFLEELI+RRELADNFC+YQP YDSL GAWEWARK+L DH DKREHIYT+EQ
Sbjct: 299 SPKSVDTFLEELIIRRELADNFCYYQPQYDSLAGAWEWARKTLTDHTGDKREHIYTREQL 358
Query: 357 EKAQTADPVSIYLWMFI 373
E A+T+DPV I +++ +
Sbjct: 359 ENAKTSDPVCISIFLVL 375
>gi|212275870|ref|NP_001130580.1| uncharacterized protein LOC100191679 [Zea mays]
gi|194689542|gb|ACF78855.1| unknown [Zea mays]
gi|414868228|tpg|DAA46785.1| TPA: type II CPD DNA photolyase [Zea mays]
Length = 493
Score = 414 bits (1063), Expect = e-113, Method: Compositional matrix adjust.
Identities = 213/369 (57%), Positives = 262/369 (71%), Gaps = 12/369 (3%)
Query: 6 PPS--TAVQPGRIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNN--VPV 61
PP+ + V P R+R+L G GPVVYWM RDQR+ DNWAL+HA + A + P+
Sbjct: 2 PPAIPSLVHPSRVRILHPGG-SHIHGPVVYWMLRDQRLADNWALLHAAELAAASTPAAPL 60
Query: 62 AVAFNLFDQ--FLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVREC 119
A+AF LF + LGA RQLGF+LRGLR L + F L G AE +P+ VR
Sbjct: 61 AIAFTLFPRPFLLGAHLRQLGFLLRGLRRLAADAHARGLPFFLLEGGPAE--LPSLVRRL 118
Query: 120 GASLLVTDFSPLREIRRCKDKICN---RVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTL 176
GAS LV DFSPLR +R D + R + ++ +H+VDAHNVVPVW AS KLEYSAKT
Sbjct: 119 GASALVADFSPLRPVREALDAVVQELLRDAANMAVHQVDAHNVVPVWTASGKLEYSAKTF 178
Query: 177 RGKINKLLPEYLIDYPMLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDA 236
R K+NK++ EYL++YP + Q +S+DWD++I ++ + VPEI WCE GE +
Sbjct: 179 RSKVNKVINEYLVEYPEVPQWAPWCMEQPKSVDWDALINSIFSEAENVPEINWCEPGESS 238
Query: 237 AMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKL 296
AMEVL GSKDGFLTKR+KNY T RN+P KP ALS LSPYLHFG ISAQRCALEA+K R L
Sbjct: 239 AMEVLLGSKDGFLTKRIKNYDTGRNDPTKPHALSCLSPYLHFGHISAQRCALEAKKRRHL 298
Query: 297 CPEAIDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQF 356
P+++DTFLEELI+RRELADNFC+YQP YDSL GAWEWARK+L DH DKREHIYT+EQ
Sbjct: 299 SPKSVDTFLEELIIRRELADNFCYYQPQYDSLAGAWEWARKTLTDHTGDKREHIYTREQL 358
Query: 357 EKAQTADPV 365
E A+T+DP+
Sbjct: 359 ENAKTSDPL 367
>gi|326507630|dbj|BAK03208.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 507
Score = 407 bits (1047), Expect = e-111, Method: Compositional matrix adjust.
Identities = 218/367 (59%), Positives = 262/367 (71%), Gaps = 11/367 (2%)
Query: 8 STAVQPGRIRVLKQGS----LDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAV 63
+ V R+RVL G K GPVVYWM RDQR+ DNWAL+HA A + P+AV
Sbjct: 14 TAPVHQARVRVLHPGQGLPPAGAKPGPVVYWMLRDQRLADNWALLHAASLAAASAAPLAV 73
Query: 64 AFNLFDQ--FLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGA 121
AF+LF + L A+ RQLGF+LRGLR L + T +I FFL G IP VR GA
Sbjct: 74 AFSLFPKPFLLSARRRQLGFLLRGLRRLAADAA-TRRIPFFLLTG-GPTEIPALVRRLGA 131
Query: 122 SLLVTDFSPLREIRRCKDKICN---RVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRG 178
S LV DFSPLR +R D + R + SV +H+VDAHNVVPVW AS KLEYSAKT R
Sbjct: 132 SALVADFSPLRPVREALDAVVGTLGRDAASVAVHQVDAHNVVPVWAASGKLEYSAKTFRS 191
Query: 179 KINKLLPEYLIDYPMLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAM 238
K+NK+L EYL+++P L Q + + IDWD +I V + +VPEI WCE GE AAM
Sbjct: 192 KMNKVLDEYLVEFPELAQVVPWDREQPKDIDWDMLIDTVCSQAEDVPEIDWCEPGEAAAM 251
Query: 239 EVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCP 298
E L G+KDGFLTKR+K+Y +DRN P KP ALSGLSPYLHFG ISAQRCALEA+K R L P
Sbjct: 252 EALLGTKDGFLTKRIKSYDSDRNYPTKPTALSGLSPYLHFGHISAQRCALEAKKRRHLSP 311
Query: 299 EAIDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEK 358
+++D FLEELI+RRELADNFC+YQP+YDS+ GAWEWARK+LKDHA+DKREHIYT+EQ E
Sbjct: 312 KSVDAFLEELIIRRELADNFCYYQPHYDSVAGAWEWARKTLKDHAADKREHIYTREQLEN 371
Query: 359 AQTADPV 365
A+TADP+
Sbjct: 372 AKTADPL 378
>gi|357145905|ref|XP_003573808.1| PREDICTED: deoxyribodipyrimidine photo-lyase-like [Brachypodium
distachyon]
Length = 503
Score = 402 bits (1034), Expect = e-109, Method: Compositional matrix adjust.
Identities = 218/379 (57%), Positives = 262/379 (69%), Gaps = 20/379 (5%)
Query: 4 LTPPSTA---------VQPGRIRVLKQG--SLDKKRGPVVYWMFRDQRVRDNWALIHAVD 52
+TPP+T V P R+RVL G + + GPVVYWM RDQR+ DNWAL+HA
Sbjct: 1 MTPPATVSPGPVGPALVHPARVRVLHPGQPTAGARPGPVVYWMLRDQRLVDNWALLHAAS 60
Query: 53 QANKNNVPVAVAFNLFDQ--FLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAED 110
A P+A+AF+LF + L A+ RQLGF+LRGLR L + F L G E
Sbjct: 61 LAAAAAAPLAIAFSLFPKPFLLSARRRQLGFLLRGLRRLAADAAARRLPFFLLIGGPTE- 119
Query: 111 NIPNFVRECGASLLVTDFSPLREIRRCKDKICN---RVSDSVTIHEVDAHNVVPVWVASE 167
IP V GAS L+ DFSPLR +R D + R V +H+VDAHNVVPVW AS
Sbjct: 120 -IPGLVHRLGASALIADFSPLRPVREALDAVVGELRRDDAGVAVHQVDAHNVVPVWAASG 178
Query: 168 KLEYSAKTLRGKINKLLPEYLIDYPMLEQPIEKWTGT-RQSIDWDSIIAAVLRKGAEVPE 226
KLEYSAKT R K++K+L YL+D+P L + + W G + IDWD +I V R+ VPE
Sbjct: 179 KLEYSAKTFRSKVSKVLDGYLVDFPGLPE-VVPWDGELPEDIDWDVLIDRVCREAENVPE 237
Query: 227 IGWCESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRC 286
I WCE GE AA+E L GSKDGFLT R+KNY DRN+P KP+ALSGLSPYLHFG ISAQRC
Sbjct: 238 IDWCEPGEAAALETLLGSKDGFLTTRIKNYDMDRNHPTKPKALSGLSPYLHFGHISAQRC 297
Query: 287 ALEARKARKLCPEAIDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDK 346
ALEA+K R L P+++D FLEELI+RRELADNFC+YQP+YDSL GAWEWARK+LKDHA DK
Sbjct: 298 ALEAKKCRHLSPKSVDAFLEELIIRRELADNFCYYQPHYDSLAGAWEWARKTLKDHAGDK 357
Query: 347 REHIYTKEQFEKAQTADPV 365
REHIYT+EQ E A+TADP+
Sbjct: 358 REHIYTREQLENAKTADPL 376
>gi|164455180|dbj|BAF97093.1| CPD photolyase [Oryza barthii]
Length = 506
Score = 399 bits (1026), Expect = e-109, Method: Compositional matrix adjust.
Identities = 214/376 (56%), Positives = 264/376 (70%), Gaps = 16/376 (4%)
Query: 3 SLTPPSTA--------VQPGRIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQA 54
S++PP TA P R+RV+ G VVYWM RDQR+ DNWAL+HA A
Sbjct: 5 SVSPPRTAPGPANPSPAHPSRVRVIHPGGGKPGGP-VVYWMLRDQRLADNWALLHAAGLA 63
Query: 55 NKNNVPVAVAFNLFDQ--FLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNI 112
+ P+AVAF LF + L A+ RQLGF+LRGLR L + + + FFLF G + I
Sbjct: 64 AASASPLAVAFALFPRPFLLSARRRQLGFLLRGLRRLAADAA-SRHLPFFLFTGGPAE-I 121
Query: 113 PNFVRECGASLLVTDFSPLREIRRCKDKICN---RVSDSVTIHEVDAHNVVPVWVASEKL 169
P VR GAS LV DFSPLR +R D + R + V +H+VDAHNVVPVW AS K+
Sbjct: 122 PALVRRLGASTLVADFSPLRPVREALDAVVGDLRREAPGVAVHQVDAHNVVPVWTASAKM 181
Query: 170 EYSAKTLRGKINKLLPEYLIDYPMLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGW 229
EYSAKT RGK++K++ EYL+++P L + + +DWD++IA V + VPEI W
Sbjct: 182 EYSAKTFRGKVSKVMDEYLVEFPELPAVVPWDREQPEGVDWDALIARVCSEAENVPEIDW 241
Query: 230 CESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALE 289
CE GE+AA+E L GSKDGFLTKR+K+Y TDRN+P KPRALS LSPYLHFG ISAQRCALE
Sbjct: 242 CEPGEEAAIEALLGSKDGFLTKRIKSYETDRNDPTKPRALSALSPYLHFGHISAQRCALE 301
Query: 290 ARKARKLCPEAIDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREH 349
A+K R L P+++D FLEEL+VRRELADNFC+YQP YDSL GAWEWARK+L DHA+DKREH
Sbjct: 302 AKKCRHLSPKSVDAFLEELVVRRELADNFCYYQPQYDSLSGAWEWARKTLMDHAADKREH 361
Query: 350 IYTKEQFEKAQTADPV 365
IYT+EQ E A+T DP+
Sbjct: 362 IYTREQLENAKTHDPL 377
>gi|164455176|dbj|BAF97091.1| CPD photolyase [Oryza meridionalis]
Length = 506
Score = 398 bits (1022), Expect = e-108, Method: Compositional matrix adjust.
Identities = 213/376 (56%), Positives = 260/376 (69%), Gaps = 16/376 (4%)
Query: 3 SLTPPSTA--------VQPGRIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQA 54
+++PP TA P R+RV+ G VVYWM RDQR+ DNWAL+HA A
Sbjct: 5 TVSPPRTAPGPANPSPAHPSRVRVIHPGGGKPGGP-VVYWMLRDQRLADNWALLHAAGLA 63
Query: 55 NKNNVPVAVAFNLFDQ--FLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNI 112
+ P+AVAF LF + L A+ RQLGF+LRGLR L + F L G AE I
Sbjct: 64 AASASPLAVAFALFPRPFLLSARRRQLGFLLRGLRRLAADATARHLPFFLLTGGPAE--I 121
Query: 113 PNFVRECGASLLVTDFSPLREIRRCKDKICN---RVSDSVTIHEVDAHNVVPVWVASEKL 169
P VR GAS LV DFSPLR +R D + R + V +H+VDAHNVVPVW AS K+
Sbjct: 122 PALVRRLGASTLVADFSPLRPVREALDAVVGDLRREAPGVAVHQVDAHNVVPVWTASAKM 181
Query: 170 EYSAKTLRGKINKLLPEYLIDYPMLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGW 229
EYSAKT RGK++K++ EYL+++P L + + +DWD++IA V + VPEI W
Sbjct: 182 EYSAKTFRGKVSKVMDEYLVEFPELPAVVPWDREQPEGVDWDALIARVCSEAENVPEIDW 241
Query: 230 CESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALE 289
CE GE+AAME L GSK G+LTKR+K+Y TDRN+P KPRALSGLSPYLHFG ISAQRCALE
Sbjct: 242 CEPGEEAAMEALLGSKHGYLTKRIKSYETDRNDPTKPRALSGLSPYLHFGHISAQRCALE 301
Query: 290 ARKARKLCPEAIDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREH 349
A+K R L P++ID FLEEL+VRRELADNFC+YQP YDSL GAWEWARK+L DHA+DKREH
Sbjct: 302 AKKRRHLSPKSIDAFLEELVVRRELADNFCYYQPQYDSLSGAWEWARKTLMDHAADKREH 361
Query: 350 IYTKEQFEKAQTADPV 365
IYT+E E A+T DP+
Sbjct: 362 IYTREHLENAKTHDPL 377
>gi|75122626|sp|Q6F6A2.1|PHR_ORYSJ RecName: Full=Deoxyribodipyrimidine photo-lyase; AltName: Full=DNA
photolyase; AltName: Full=OsCPDII; AltName:
Full=Photoreactivating enzyme
gi|49532671|dbj|BAD26607.1| CPD photolyase [Oryza sativa Japonica Group]
gi|70067250|dbj|BAE06248.1| CPD photolyase [Oryza sativa Japonica Group]
gi|78707888|gb|ABB46863.1| Deoxyribodipyrimidine photo-lyase, putative, expressed [Oryza
sativa Japonica Group]
gi|164455166|dbj|BAF97086.1| CPD photolyase [Oryza sativa]
Length = 506
Score = 394 bits (1012), Expect = e-107, Method: Compositional matrix adjust.
Identities = 214/376 (56%), Positives = 261/376 (69%), Gaps = 16/376 (4%)
Query: 3 SLTPPSTA--------VQPGRIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQA 54
S++PP TA P R+RV+ G VVYWM RDQR+ DNWAL+HA A
Sbjct: 5 SVSPPRTAPGPANPSPAHPSRVRVIHPGGGKPGGP-VVYWMLRDQRLADNWALLHAAGLA 63
Query: 55 NKNNVPVAVAFNLFDQ--FLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNI 112
+ P+AVAF LF + L A+ RQLGF+LRGLR L + F G AE I
Sbjct: 64 AASASPLAVAFALFPRPFLLSARRRQLGFLLRGLRRLAADAAARHLPFFLFTGGPAE--I 121
Query: 113 PNFVRECGASLLVTDFSPLREIRRCKDKICN---RVSDSVTIHEVDAHNVVPVWVASEKL 169
P VR GAS LV DFSPLR +R D + R + V +H+VDAHNVVPVW AS K+
Sbjct: 122 PALVRRLGASTLVADFSPLRPVREALDAVVGDLRREAPGVAVHQVDAHNVVPVWTASAKM 181
Query: 170 EYSAKTLRGKINKLLPEYLIDYPMLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGW 229
EYSAKT RGK++K++ EYL+++P L + + +DWD++IA V + VPEI W
Sbjct: 182 EYSAKTFRGKVSKVMDEYLVEFPELPAVVPWDREQPEGVDWDALIARVCSEAENVPEIDW 241
Query: 230 CESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALE 289
CE GE+AA+E L GSKDGFLTKR+K+Y TDRN+P KPRALSGLSPYLHFG ISAQRCALE
Sbjct: 242 CEPGEEAAIEALLGSKDGFLTKRIKSYETDRNDPTKPRALSGLSPYLHFGHISAQRCALE 301
Query: 290 ARKARKLCPEAIDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREH 349
A+K R L P+++D FLEEL+VRRELADNFC+YQP YDSL GAWEWARK+L DHA+DKREH
Sbjct: 302 AKKCRHLSPKSVDAFLEELVVRRELADNFCYYQPQYDSLSGAWEWARKTLMDHAADKREH 361
Query: 350 IYTKEQFEKAQTADPV 365
IYT+EQ E A+T DP+
Sbjct: 362 IYTREQLENAKTHDPL 377
>gi|53147493|dbj|BAD52107.1| CPD photolyase [Oryza sativa Indica Group]
gi|70067245|dbj|BAE06247.1| CPD photolyase [Oryza sativa Indica Group]
gi|164455150|dbj|BAF97078.1| CPD photolyase [Oryza rufipogon]
gi|164455152|dbj|BAF97079.1| CPD photolyase [Oryza rufipogon]
gi|164455154|dbj|BAF97080.1| CPD photolyase [Oryza rufipogon]
gi|164455156|dbj|BAF97081.1| CPD photolyase [Oryza rufipogon]
gi|164455162|dbj|BAF97084.1| CPD photolyase [Oryza sativa Indica Group]
gi|164455164|dbj|BAF97085.1| CPD photolyase [Oryza sativa Indica Group]
gi|164455168|dbj|BAF97087.1| CPD photolyase [Oryza sativa]
gi|164455182|dbj|BAF97094.1| CPD photolyase [Oryza rufipogon]
Length = 506
Score = 392 bits (1008), Expect = e-106, Method: Compositional matrix adjust.
Identities = 213/376 (56%), Positives = 260/376 (69%), Gaps = 16/376 (4%)
Query: 3 SLTPPSTA--------VQPGRIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQA 54
S++PP TA P R+RV+ G VVYWM RDQR+ DNWAL+HA A
Sbjct: 5 SVSPPRTAPGPANPSPAHPSRVRVIHPGGGKPGGP-VVYWMLRDQRLADNWALLHAAGLA 63
Query: 55 NKNNVPVAVAFNLFDQ--FLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNI 112
+ P+AVAF LF + L A+ RQLGF+LRGLR L + F G AE I
Sbjct: 64 AASASPLAVAFALFPRPFLLSARRRQLGFLLRGLRRLAADAAARHLPFFLFTGGPAE--I 121
Query: 113 PNFVRECGASLLVTDFSPLREIRRCKDKICN---RVSDSVTIHEVDAHNVVPVWVASEKL 169
P VR GAS LV DFSPLR +R D + R + V +H+VDAHNVVPVW AS K+
Sbjct: 122 PALVRRLGASTLVADFSPLRPVREALDAVVGDLRREAPGVAVHQVDAHNVVPVWTASAKM 181
Query: 170 EYSAKTLRGKINKLLPEYLIDYPMLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGW 229
EYSAKT RGK++K++ EYL+++P L + + +DWD++IA V + VPEI W
Sbjct: 182 EYSAKTFRGKVSKVMDEYLVEFPELPAVVPWDREQPEGVDWDALIARVCSEAENVPEIDW 241
Query: 230 CESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALE 289
CE GE+AA+E L GSKDGFLTKR+K+Y TDRN+P KPRALSGLSPYLHFG ISA RCALE
Sbjct: 242 CEPGEEAAIEALLGSKDGFLTKRIKSYETDRNDPTKPRALSGLSPYLHFGHISAHRCALE 301
Query: 290 ARKARKLCPEAIDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREH 349
A+K R L P+++D FLEEL+VRRELADNFC+YQP YDSL GAWEWARK+L DHA+DKREH
Sbjct: 302 AKKCRHLSPKSVDAFLEELVVRRELADNFCYYQPQYDSLSGAWEWARKTLMDHAADKREH 361
Query: 350 IYTKEQFEKAQTADPV 365
IYT+EQ E A+T DP+
Sbjct: 362 IYTREQLENAKTHDPL 377
>gi|364506185|pdb|3UMV|A Chain A, Eukaryotic Class Ii Cpd Photolyase Structure Reveals A
Basis For Improved Uv-Tolerance In Plants
gi|364506186|pdb|3UMV|B Chain B, Eukaryotic Class Ii Cpd Photolyase Structure Reveals A
Basis For Improved Uv-Tolerance In Plants
gi|312261184|dbj|BAC76449.2| CPD-photolyase [Oryza sativa Japonica Group]
Length = 506
Score = 392 bits (1007), Expect = e-106, Method: Compositional matrix adjust.
Identities = 213/376 (56%), Positives = 261/376 (69%), Gaps = 16/376 (4%)
Query: 3 SLTPPSTA--------VQPGRIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQA 54
S++PP TA P R+RV+ G VVYWM RDQR+ DNWAL+HA A
Sbjct: 5 SVSPPRTAPGPANPSPAHPSRVRVIHPGGGKPGGP-VVYWMLRDQRLADNWALLHAAGLA 63
Query: 55 NKNNVPVAVAFNLFDQ--FLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNI 112
+ P+AVAF LF + L A+ RQLGF+LRGLR L + F G AE I
Sbjct: 64 AASASPLAVAFALFPRPFLLSARRRQLGFLLRGLRRLAADAAARHLPFFLFTGGPAE--I 121
Query: 113 PNFVRECGASLLVTDFSPLREIRRCKDKICN---RVSDSVTIHEVDAHNVVPVWVASEKL 169
P V+ GAS LV DFSPLR +R D + R + V +H+VDAHNVVPVW AS K+
Sbjct: 122 PALVQRLGASTLVADFSPLRPVREALDAVVGDLRREAPGVAVHQVDAHNVVPVWTASAKM 181
Query: 170 EYSAKTLRGKINKLLPEYLIDYPMLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGW 229
EYSAKT RGK++K++ EYL+++P L + + +DWD++IA V + VPEI W
Sbjct: 182 EYSAKTFRGKVSKVMDEYLVEFPELPAVVPWDREQPEGVDWDALIARVCSEAENVPEIDW 241
Query: 230 CESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALE 289
CE GE+AA+E L GSKDGFLTKR+K+Y TDRN+P KPRALSGLSPYLHFG ISAQRCALE
Sbjct: 242 CEPGEEAAIEALLGSKDGFLTKRIKSYETDRNDPTKPRALSGLSPYLHFGHISAQRCALE 301
Query: 290 ARKARKLCPEAIDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREH 349
A+K R L P+++D FLEEL+VRRELADNFC+YQP YDSL GAWEWARK+L DHA+DKREH
Sbjct: 302 AKKCRHLSPKSVDAFLEELVVRRELADNFCYYQPQYDSLSGAWEWARKTLMDHAADKREH 361
Query: 350 IYTKEQFEKAQTADPV 365
IYT+EQ E A+T DP+
Sbjct: 362 IYTREQLENAKTHDPL 377
>gi|164455170|dbj|BAF97088.1| CPD photolyase [Oryza barthii]
gi|164455178|dbj|BAF97092.1| CPD photolyase [Oryza barthii]
gi|164455184|dbj|BAF97095.1| CPD photolyase [Oryza glaberrima]
gi|164455186|dbj|BAF97096.1| CPD photolyase [Oryza glaberrima]
Length = 506
Score = 392 bits (1007), Expect = e-106, Method: Compositional matrix adjust.
Identities = 213/376 (56%), Positives = 260/376 (69%), Gaps = 16/376 (4%)
Query: 3 SLTPPSTA--------VQPGRIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQA 54
S++PP TA P R+RV+ G VVYWM RDQR+ DNWAL+HA A
Sbjct: 5 SVSPPRTAPGPANPSPAHPSRVRVIHPGGGKPGGP-VVYWMLRDQRLADNWALLHAAGLA 63
Query: 55 NKNNVPVAVAFNLFDQ--FLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNI 112
+ P+AVAF LF + L A+ RQLGF+LRGLR L + F G AE I
Sbjct: 64 AASASPLAVAFALFSRPFLLSARRRQLGFLLRGLRRLAADAAARHLPFFLFTGGPAE--I 121
Query: 113 PNFVRECGASLLVTDFSPLREIRRCKDKICN---RVSDSVTIHEVDAHNVVPVWVASEKL 169
P VR GAS LV DFSPLR +R D + R + V +H+VDAHNVVPVW AS K+
Sbjct: 122 PALVRRLGASTLVADFSPLRPVREALDAVVGDLRREAPGVAVHQVDAHNVVPVWTASAKM 181
Query: 170 EYSAKTLRGKINKLLPEYLIDYPMLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGW 229
EYSAKT RGK++K++ EYL+++P L + + +DWD++IA V + VPEI W
Sbjct: 182 EYSAKTFRGKVSKVMDEYLVEFPELPAVVPWDREQPEGVDWDALIARVCSEAENVPEIDW 241
Query: 230 CESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALE 289
CE GE+AA+E L GSKDGFLTKR+K+Y TDRN+P KPRALS LSPYLHFG ISAQRCALE
Sbjct: 242 CEPGEEAAIEALLGSKDGFLTKRIKSYETDRNDPTKPRALSALSPYLHFGHISAQRCALE 301
Query: 290 ARKARKLCPEAIDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREH 349
A+K R L P+++D FLEEL+VRRELADNFC+YQP YDSL GAWEWARK+L DHA+DKREH
Sbjct: 302 AKKCRHLSPKSVDAFLEELVVRRELADNFCYYQPQYDSLSGAWEWARKTLMDHAADKREH 361
Query: 350 IYTKEQFEKAQTADPV 365
IYT+EQ E A+T DP+
Sbjct: 362 IYTREQLENAKTHDPL 377
>gi|164455160|dbj|BAF97083.1| CPD photolyase [Oryza meridionalis]
gi|164455174|dbj|BAF97090.1| CPD photolyase [Oryza meridionalis]
Length = 506
Score = 391 bits (1005), Expect = e-106, Method: Compositional matrix adjust.
Identities = 213/376 (56%), Positives = 260/376 (69%), Gaps = 16/376 (4%)
Query: 3 SLTPPSTA--------VQPGRIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQA 54
+++PP TA P R+RV+ G VVYWM RDQR+ DNWAL+HA A
Sbjct: 5 TVSPPRTAPGPANPSPAHPSRVRVIHPGGGKPGGP-VVYWMLRDQRLADNWALLHAAGLA 63
Query: 55 NKNNVPVAVAFNLFDQ--FLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNI 112
+ P+AVAF LF + L A+ RQLGF+LRGLR L + F L G AE I
Sbjct: 64 AASASPLAVAFALFPRPFLLSARRRQLGFLLRGLRRLAADAAARHLPFFLLTGGPAE--I 121
Query: 113 PNFVRECGASLLVTDFSPLREIRRCKDKICN---RVSDSVTIHEVDAHNVVPVWVASEKL 169
P VR GAS LV DFSPLR +R D + R + V +H+VDAHNVVPVW AS K+
Sbjct: 122 PALVRRLGASTLVADFSPLRPVREALDAVVGDLRREAPGVAVHQVDAHNVVPVWTASAKM 181
Query: 170 EYSAKTLRGKINKLLPEYLIDYPMLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGW 229
EYSAKT RGK++K++ EYL+++P L + + +DWD++IA V + VPEI W
Sbjct: 182 EYSAKTFRGKVSKVMDEYLVEFPELPAVVPWDREQPEGVDWDALIARVCSEAENVPEIDW 241
Query: 230 CESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALE 289
CE GE+AAME L GSK G+LTKR+K+Y TDRN+P KPRALSGLSPYLHFG ISAQRCALE
Sbjct: 242 CEPGEEAAMEALLGSKHGYLTKRIKSYETDRNDPTKPRALSGLSPYLHFGHISAQRCALE 301
Query: 290 ARKARKLCPEAIDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREH 349
A+K R L P++ID FLEEL+VRRELADNFC+YQP YDSL GAWEWARK+L DHA+DKREH
Sbjct: 302 AKKRRHLSPKSIDAFLEELVVRRELADNFCYYQPQYDSLSGAWEWARKTLMDHAADKREH 361
Query: 350 IYTKEQFEKAQTADPV 365
IYT+E E A+T DP+
Sbjct: 362 IYTREHLENAKTHDPL 377
>gi|164455158|dbj|BAF97082.1| CPD photolyase [Oryza rufipogon]
Length = 506
Score = 391 bits (1004), Expect = e-106, Method: Compositional matrix adjust.
Identities = 212/376 (56%), Positives = 259/376 (68%), Gaps = 16/376 (4%)
Query: 3 SLTPPSTA--------VQPGRIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQA 54
S++PP T P R+RV+ G VVYWM RDQR+ DNWAL+HA A
Sbjct: 5 SVSPPRTVPGPANPSPAHPSRVRVIHPGGGKPGGP-VVYWMLRDQRLADNWALLHAAGLA 63
Query: 55 NKNNVPVAVAFNLFDQ--FLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNI 112
+ P+AVAF LF + L A+ RQLGF+LRGLR L + F G AE I
Sbjct: 64 AASASPLAVAFALFPRPFLLSARRRQLGFLLRGLRRLAADAAARHLPFFLFTGGPAE--I 121
Query: 113 PNFVRECGASLLVTDFSPLREIRRCKDKICN---RVSDSVTIHEVDAHNVVPVWVASEKL 169
P VR GAS LV DFSPLR +R D + R + V +H+VDAHNVVPVW AS K+
Sbjct: 122 PALVRRLGASTLVADFSPLRPVREALDAVVGDLRREAPGVAVHQVDAHNVVPVWTASAKM 181
Query: 170 EYSAKTLRGKINKLLPEYLIDYPMLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGW 229
EYSAKT RGK++K++ EYL+++P L + + +DWD++IA V + VPEI W
Sbjct: 182 EYSAKTFRGKVSKVMDEYLVEFPELPAVVPWDREQPEGVDWDALIARVCSEAENVPEIDW 241
Query: 230 CESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALE 289
CE GE+AA+E L GSKDGFLTKR+K+Y TDRN+P KPRALSGLSPYLHFG ISA RCALE
Sbjct: 242 CEPGEEAAIEALLGSKDGFLTKRIKSYETDRNDPTKPRALSGLSPYLHFGHISAHRCALE 301
Query: 290 ARKARKLCPEAIDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREH 349
A+K R L P+++D FLEEL+VRRELADNFC+YQP YDSL GAWEWARK+L DHA+DKREH
Sbjct: 302 AKKCRHLSPKSVDAFLEELVVRRELADNFCYYQPQYDSLSGAWEWARKTLMDHAADKREH 361
Query: 350 IYTKEQFEKAQTADPV 365
IYT+EQ E A+T DP+
Sbjct: 362 IYTREQLENAKTHDPL 377
>gi|164455172|dbj|BAF97089.1| CPD photolyase [Oryza meridionalis]
Length = 506
Score = 390 bits (1001), Expect = e-106, Method: Compositional matrix adjust.
Identities = 213/376 (56%), Positives = 259/376 (68%), Gaps = 16/376 (4%)
Query: 3 SLTPPSTA--------VQPGRIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQA 54
S++PP TA P R+RV+ G VVYWM RDQR+ DNWAL+HA A
Sbjct: 5 SVSPPRTAPGPANPSPAHPSRVRVIHPGGGKPGGP-VVYWMLRDQRLADNWALLHAAGLA 63
Query: 55 NKNNVPVAVAFNLFDQ--FLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNI 112
+ P+AVAF LF + L A+ RQLGF+LRGLR L + F L G AE I
Sbjct: 64 AASASPLAVAFALFPRPFLLSARRRQLGFLLRGLRRLAADAAARHLPFFLLTGGPAE--I 121
Query: 113 PNFVRECGASLLVTDFSPLREIRRCKDKICN---RVSDSVTIHEVDAHNVVPVWVASEKL 169
P VR GAS LV DFSPLR +R D + R + V +H+VDAHNVVPVW AS K+
Sbjct: 122 PALVRRLGASTLVADFSPLRPVREALDAVVGDLRREAPGVAVHQVDAHNVVPVWTASAKM 181
Query: 170 EYSAKTLRGKINKLLPEYLIDYPMLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGW 229
EYSAKT RGK++K++ EYL+++P L + + +DWD++IA V + VPEI W
Sbjct: 182 EYSAKTFRGKVSKVMDEYLVEFPELPAVVPWDREQPEGVDWDALIARVCSEAENVPEIDW 241
Query: 230 CESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALE 289
CE GE+AAME L GSK G+LTKR+K+Y TDRN+P KPRALSGLSPYLHFG ISAQRCALE
Sbjct: 242 CEPGEEAAMEALLGSKHGYLTKRIKSYETDRNDPTKPRALSGLSPYLHFGHISAQRCALE 301
Query: 290 ARKARKLCPEAIDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREH 349
A+K R L P++ID FLEEL+VRRELADNFC+YQP Y SL GAWEWARK+L DHA+DKREH
Sbjct: 302 AKKRRHLSPKSIDAFLEELVVRRELADNFCYYQPQYGSLSGAWEWARKTLMDHAADKREH 361
Query: 350 IYTKEQFEKAQTADPV 365
IYT+E E A+T DP+
Sbjct: 362 IYTREHLENAKTHDPL 377
>gi|76667611|dbj|BAE45635.1| photolyase [Oryza sativa Japonica Group]
Length = 481
Score = 389 bits (1000), Expect = e-105, Method: Compositional matrix adjust.
Identities = 212/376 (56%), Positives = 259/376 (68%), Gaps = 16/376 (4%)
Query: 3 SLTPPSTA--------VQPGRIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQA 54
S++PP TA P R+RV+ G VVYWM RDQR+ DNWAL+HA A
Sbjct: 5 SVSPPRTAPGPANPSPAHPSRVRVIHPGGGKPGGP-VVYWMLRDQRLADNWALLHAAGLA 63
Query: 55 NKNNVPVAVAFNLFDQ--FLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNI 112
+ P+AVAF LF + L A+ RQLGF+LRGLR L + F G AE I
Sbjct: 64 AASASPLAVAFALFPRPFLLSARRRQLGFLLRGLRRLAADAAARHLPFFLFTGGPAE--I 121
Query: 113 PNFVRECGASLLVTDFSPLREIRRCKDKICN---RVSDSVTIHEVDAHNVVPVWVASEKL 169
P VR GAS LV DFSPLR +R D + R + V +H+VDAHNVVPVW AS K+
Sbjct: 122 PALVRRLGASTLVADFSPLRPVREALDAVVGDLRREAPGVAVHQVDAHNVVPVWTASAKM 181
Query: 170 EYSAKTLRGKINKLLPEYLIDYPMLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGW 229
EYSAKT RGK++K++ EYL+++P L + + +DWD++IA V + VPEI W
Sbjct: 182 EYSAKTFRGKVSKVMDEYLVEFPELPAVVPWDREQPEGVDWDALIARVCSEAENVPEIDW 241
Query: 230 CESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALE 289
CE GE+AA+E L SKDGFLTKR+K+Y TDRN+P KPRALSGLSPYLHFG ISA RCALE
Sbjct: 242 CEPGEEAAIEALLSSKDGFLTKRIKSYETDRNDPTKPRALSGLSPYLHFGHISAHRCALE 301
Query: 290 ARKARKLCPEAIDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREH 349
A+K R L P+++D FLEEL+VRRELADNFC+YQP YDSL GAWEWARK+L DHA+DKREH
Sbjct: 302 AKKCRHLSPKSVDAFLEELVVRRELADNFCYYQPQYDSLSGAWEWARKTLMDHAADKREH 361
Query: 350 IYTKEQFEKAQTADPV 365
IYT+EQ E A+T DP+
Sbjct: 362 IYTREQLENAKTHDPL 377
>gi|222612495|gb|EEE50627.1| hypothetical protein OsJ_30831 [Oryza sativa Japonica Group]
Length = 516
Score = 387 bits (993), Expect = e-105, Method: Compositional matrix adjust.
Identities = 214/386 (55%), Positives = 261/386 (67%), Gaps = 26/386 (6%)
Query: 3 SLTPPSTA--------VQPGRIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQA 54
S++PP TA P R+RV+ G VVYWM RDQR+ DNWAL+HA A
Sbjct: 5 SVSPPRTAPGPANPSPAHPSRVRVIHPGGGKPGGP-VVYWMLRDQRLADNWALLHAAGLA 63
Query: 55 NKNNVPVAVAFNLFDQ--FLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNI 112
+ P+AVAF LF + L A+ RQLGF+LRGLR L + F G AE I
Sbjct: 64 AASASPLAVAFALFPRPFLLSARRRQLGFLLRGLRRLAADAAARHLPFFLFTGGPAE--I 121
Query: 113 PNFVRECGASLLVTDFSPLREIRRCKDKICN---RVSDSVTIHEVDAHNVVPVWVASEKL 169
P VR GAS LV DFSPLR +R D + R + V +H+VDAHNVVPVW AS K+
Sbjct: 122 PALVRRLGASTLVADFSPLRPVREALDAVVGDLRREAPGVAVHQVDAHNVVPVWTASAKM 181
Query: 170 EYSAKTLRGKINKLLPEYLIDYPMLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGW 229
EYSAKT RGK++K++ EYL+++P L + + +DWD++IA V + VPEI W
Sbjct: 182 EYSAKTFRGKVSKVMDEYLVEFPELPAVVPWDREQPEGVDWDALIARVCSEAENVPEIDW 241
Query: 230 CESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALE 289
CE GE+AA+E L GSKDGFLTKR+K+Y TDRN+P KPRALSGLSPYLHFG ISAQRCALE
Sbjct: 242 CEPGEEAAIEALLGSKDGFLTKRIKSYETDRNDPTKPRALSGLSPYLHFGHISAQRCALE 301
Query: 290 ARKARKLCP----------EAIDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSL 339
A+K R L P +++D FLEEL+VRRELADNFC+YQP YDSL GAWEWARK+L
Sbjct: 302 AKKCRHLSPKMFEVTCVLKQSVDAFLEELVVRRELADNFCYYQPQYDSLSGAWEWARKTL 361
Query: 340 KDHASDKREHIYTKEQFEKAQTADPV 365
DHA+DKREHIYT+EQ E A+T DP+
Sbjct: 362 MDHAADKREHIYTREQLENAKTHDPL 387
>gi|22655767|gb|AAN04184.1| Putative CPD photolyase [Oryza sativa Japonica Group]
Length = 565
Score = 386 bits (992), Expect = e-105, Method: Compositional matrix adjust.
Identities = 214/387 (55%), Positives = 261/387 (67%), Gaps = 26/387 (6%)
Query: 2 ASLTPPSTA--------VQPGRIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQ 53
S++PP TA P R+RV+ G VVYWM RDQR+ DNWAL+HA
Sbjct: 4 TSVSPPRTAPGPANPSPAHPSRVRVIHPGGGKPGGP-VVYWMLRDQRLADNWALLHAAGL 62
Query: 54 ANKNNVPVAVAFNLFDQ--FLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDN 111
A + P+AVAF LF + L A+ RQLGF+LRGLR L + F G AE
Sbjct: 63 AAASASPLAVAFALFPRPFLLSARRRQLGFLLRGLRRLAADAAARHLPFFLFTGGPAE-- 120
Query: 112 IPNFVRECGASLLVTDFSPLREIRRCKDKICN---RVSDSVTIHEVDAHNVVPVWVASEK 168
IP VR GAS LV DFSPLR +R D + R + V +H+VDAHNVVPVW AS K
Sbjct: 121 IPALVRRLGASTLVADFSPLRPVREALDAVVGDLRREAPGVAVHQVDAHNVVPVWTASAK 180
Query: 169 LEYSAKTLRGKINKLLPEYLIDYPMLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIG 228
+EYSAKT RGK++K++ EYL+++P L + + +DWD++IA V + VPEI
Sbjct: 181 MEYSAKTFRGKVSKVMDEYLVEFPELPAVVPWDREQPEGVDWDALIARVCSEAENVPEID 240
Query: 229 WCESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCAL 288
WCE GE+AA+E L GSKDGFLTKR+K+Y TDRN+P KPRALSGLSPYLHFG ISAQRCAL
Sbjct: 241 WCEPGEEAAIEALLGSKDGFLTKRIKSYETDRNDPTKPRALSGLSPYLHFGHISAQRCAL 300
Query: 289 EARKARKLCP----------EAIDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKS 338
EA+K R L P +++D FLEEL+VRRELADNFC+YQP YDSL GAWEWARK+
Sbjct: 301 EAKKCRHLSPKMFEVTCVLKQSVDAFLEELVVRRELADNFCYYQPQYDSLSGAWEWARKT 360
Query: 339 LKDHASDKREHIYTKEQFEKAQTADPV 365
L DHA+DKREHIYT+EQ E A+T DP+
Sbjct: 361 LMDHAADKREHIYTREQLENAKTHDPL 387
>gi|218184184|gb|EEC66611.1| hypothetical protein OsI_32845 [Oryza sativa Indica Group]
Length = 516
Score = 382 bits (980), Expect = e-103, Method: Compositional matrix adjust.
Identities = 212/386 (54%), Positives = 259/386 (67%), Gaps = 26/386 (6%)
Query: 3 SLTPPSTA--------VQPGRIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQA 54
S++PP TA P R+RV+ G VV WM RDQR+ DNWAL+HA A
Sbjct: 5 SVSPPRTAPGPANPSPAHPSRVRVIHPGGGKPGGP-VVSWMLRDQRLADNWALLHAAGLA 63
Query: 55 NKNNVPVAVAFNLFDQ--FLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNI 112
+ P+AVAF LF + L A+ RQLGF+LRGLR L + F G AE I
Sbjct: 64 AASASPLAVAFALFPRPFLLSARRRQLGFLLRGLRRLAADAAARHLPFFLFTGGPAE--I 121
Query: 113 PNFVRECGASLLVTDFSPLREIRRCKDKICN---RVSDSVTIHEVDAHNVVPVWVASEKL 169
P VR GAS LV DFSPLR +R D + R + V +H+VDAHNVVPVW AS K+
Sbjct: 122 PALVRRLGASTLVADFSPLRPVREALDAVVGDLRREAPGVAVHQVDAHNVVPVWTASAKM 181
Query: 170 EYSAKTLRGKINKLLPEYLIDYPMLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGW 229
EYSAKT RGK++K++ EYL+++P L + + +DWD++IA V + VPEI W
Sbjct: 182 EYSAKTFRGKVSKVMDEYLVEFPELPAVVPWDREQPEGVDWDALIARVCSEAENVPEIDW 241
Query: 230 CESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALE 289
CE GE+AA+E L GSKDGFLTKR+K+Y TDRN+P KPRALSGLSPYLHFG ISA RCALE
Sbjct: 242 CEPGEEAAIEALLGSKDGFLTKRIKSYETDRNDPTKPRALSGLSPYLHFGHISAHRCALE 301
Query: 290 ARKARKLCP----------EAIDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSL 339
A+K R L P +++D FLEEL+VRRELADNFC+YQP YDSL GAWEWARK+L
Sbjct: 302 AKKCRHLSPKMFEVTCVLKQSVDAFLEELVVRRELADNFCYYQPQYDSLSGAWEWARKTL 361
Query: 340 KDHASDKREHIYTKEQFEKAQTADPV 365
DHA+DKREHIYT+EQ E A+T DP+
Sbjct: 362 MDHAADKREHIYTREQLENAKTHDPL 387
>gi|307110754|gb|EFN58989.1| CPD photolyase [Chlorella variabilis]
Length = 444
Score = 380 bits (977), Expect = e-103, Method: Compositional matrix adjust.
Identities = 188/333 (56%), Positives = 243/333 (72%), Gaps = 9/333 (2%)
Query: 35 MFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQRNIE 94
M RDQRVRDNWAL+HA +A+K VPVAVAFNL ++L A ARQ GFM+RGLRL+Q ++
Sbjct: 1 MSRDQRVRDNWALLHAAAEASKRGVPVAVAFNLVTEYLHAGARQFGFMVRGLRLMQPKLQ 60
Query: 95 ETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICNRVSDSVTIHEV 154
I FL +G+ + +P V++ GASLLVTDF+PLR R ++ + ++ V HEV
Sbjct: 61 -ALNIPLFLLKGDPLETVPQLVKDTGASLLVTDFAPLRLGRHWREGVAAKIK--VPFHEV 117
Query: 155 DAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQPIEKWTG--TRQSIDWDS 212
DAHNVVPVWVAS+K EY+A+T+R KI+ LPE+L ++P LE P +W+ T +++DWD+
Sbjct: 118 DAHNVVPVWVASDKREYAARTIRPKIHSKLPEFLTEFPQLE-PQPEWSSGVTPEAVDWDA 176
Query: 213 IIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTK--RLKNYPTDRNNPLKPRALS 270
++A VL +G EVPE+ WC GEDAAME L G K GFL RL Y RN+P P ALS
Sbjct: 177 LLAEVLERGKEVPEVRWCAPGEDAAMEALSGPK-GFLGSKARLARYEEKRNDPTVPDALS 235
Query: 271 GLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVRRELADNFCFYQPNYDSLKG 330
GLSPYLHFG +S QR A+EA + + + +++ FLEELIVRRELADN+CFY PNYDSL
Sbjct: 236 GLSPYLHFGHLSPQRAAVEAARNKAVHKASVEGFLEELIVRRELADNYCFYVPNYDSLDA 295
Query: 331 AWEWARKSLKDHASDKREHIYTKEQFEKAQTAD 363
A++WAR++L DH DKREH+YT+EQFEK QT D
Sbjct: 296 AYDWARQTLNDHRGDKREHVYTREQFEKGQTHD 328
>gi|5081541|gb|AAD39433.1|AF129458_1 class II DNA photolyase [Chlamydomonas reinhardtii]
Length = 612
Score = 377 bits (968), Expect = e-102, Method: Compositional matrix adjust.
Identities = 197/358 (55%), Positives = 248/358 (69%), Gaps = 11/358 (3%)
Query: 11 VQPGRIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVD--QANKNNVPVAVAFNLF 68
V P R+RVLK GS+ K GPVVYWM RDQR+ DNWAL+HA++ Q + VAVAFNL
Sbjct: 50 VNPKRVRVLKPGSIGK--GPVVYWMSRDQRLADNWALLHAIEAAQGAAGSSQVAVAFNLV 107
Query: 69 DQFLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDF 128
FLGA ARQ GFMLRGLR L +E I F+L +G+ +P V GA LLVTD+
Sbjct: 108 PAFLGAGARQFGFMLRGLRQLAPRLEAR-GIKFYLLKGDPAHTLPQLVSGLGAGLLVTDY 166
Query: 129 SPLREIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYL 188
SPLR R +D++C+ + SV +HEVDAHNVVPVW ASEK E A+TLR KI+K LPE+L
Sbjct: 167 SPLRLGRTWRDQVCSALG-SVPVHEVDAHNVVPVWAASEKREVGARTLRPKIHKALPEFL 225
Query: 189 IDYPMLEQPIEKWTGT--RQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKD 246
++P + + WT +++DWD +I+ VL +GA+VPE+ WC GE+AA+E L G +
Sbjct: 226 REFPEVPT-LPAWTPAVAPEAVDWDGLISEVLSRGADVPEVEWCTPGEEAALEALTGPR- 283
Query: 247 GFLT-KRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFL 305
GFL+ RL Y T RN+P P ALSGLSPYLHFGQ++ QR ALEA K R A++++L
Sbjct: 284 GFLSPARLSLYDTKRNDPATPSALSGLSPYLHFGQLAPQRAALEAAKHRAKYKAAVESYL 343
Query: 306 EELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTAD 363
EEL+VRRELADNFC Y P YDSL+ A EWAR SL H +DKRE +YT++Q E T D
Sbjct: 344 EELVVRRELADNFCHYCPTYDSLEAAAEWARDSLDKHRTDKREFLYTRDQLECGATHD 401
>gi|302843525|ref|XP_002953304.1| class II photolyase [Volvox carteri f. nagariensis]
gi|300261401|gb|EFJ45614.1| class II photolyase [Volvox carteri f. nagariensis]
Length = 589
Score = 370 bits (951), Expect = e-100, Method: Compositional matrix adjust.
Identities = 191/376 (50%), Positives = 252/376 (67%), Gaps = 29/376 (7%)
Query: 11 VQPGRIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNN------------ 58
V P RIRVLK+G++ GPVV+WM RDQR+ DNWAL+HA++ A +N+
Sbjct: 33 VNPKRIRVLKEGTIGN--GPVVFWMSRDQRIEDNWALLHAIEVAQQNHRQQSAAASSGGG 90
Query: 59 ---------VPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAE 109
VAVAFNL FLGA ARQ GFMLRGLR LQ +E I FFL +G+
Sbjct: 91 GSSSSSSSEPQVAVAFNLVPAFLGAGARQFGFMLRGLRELQPKLEAK-GIAFFLLKGDPA 149
Query: 110 DNIPNFVRECGASLLVTDFSPLREIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKL 169
+P+ V GA LLVTD+SPLR R+ ++++C+ V V +HEVDAHNVVPVWVAS+K
Sbjct: 150 RTLPDLVTRLGAGLLVTDYSPLRLGRQWREQVCSSVP--VPVHEVDAHNVVPVWVASDKR 207
Query: 170 EYSAKTLRGKINKLLPEYLIDYPMLEQPIEKWTG--TRQSIDWDSIIAAVLRKGAEVPEI 227
E A+TLR KI+K LPE+L D+P + Q + W+ + ++W++++ VL +G+ VPE+
Sbjct: 208 EVGARTLRPKIHKHLPEFLTDFPEVPQ-LPPWSHEVKPEPVNWETLLEEVLTRGSAVPEV 266
Query: 228 GWCESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCA 287
WC+ GEDAA++ L+G + RL Y + RN+P PRALS LSPYLHFGQ++ QR A
Sbjct: 267 DWCKPGEDAALQALQGPAGFLSSTRLSLYDSKRNDPATPRALSNLSPYLHFGQLAPQRAA 326
Query: 288 LEARKARKLCPEAIDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKR 347
LEA K R A+++FLEEL+VRREL+DNFC Y PNYDSL A EWAR++L+ H DKR
Sbjct: 327 LEAAKHRAKFKAAVESFLEELVVRRELSDNFCHYTPNYDSLACAAEWARETLEKHRGDKR 386
Query: 348 EHIYTKEQFEKAQTAD 363
E +YT+EQ E +T D
Sbjct: 387 EFLYTREQLEAGRTHD 402
>gi|81157959|dbj|BAE48230.1| CPD photolyase [Chlorella pyrenoidosa]
Length = 448
Score = 362 bits (928), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 184/333 (55%), Positives = 237/333 (71%), Gaps = 8/333 (2%)
Query: 34 WMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQRNI 93
WM RDQRVRDNWALI+A A K VPVAVAF+L +FLGA ARQ GFM+RGL+L+Q +
Sbjct: 1 WMSRDQRVRDNWALIYAAQAAAKRGVPVAVAFSLVTEFLGAGARQFGFMVRGLQLIQPKL 60
Query: 94 EETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICNRVSDSVTIHE 153
E I FFL +G+ + IP V++ GASLLVTD++PLR R+ + + ++ V HE
Sbjct: 61 E-ALNIPFFLLKGDPSETIPKLVQDTGASLLVTDYAPLRLGRQWRQAVAEQLE--VPFHE 117
Query: 154 VDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQPIEKWTG--TRQSIDWD 211
VDAHNVVPVWVAS+K EY+A+T+R KI+ LPE+L +YP L Q W +++DW+
Sbjct: 118 VDAHNVVPVWVASDKREYAARTIRPKIHSKLPEFLKEYPELPQQA-TWAHEVKPEAVDWE 176
Query: 212 SIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTK-RLKNYPTDRNNPLKPRALS 270
++IA VL +G VPE+ WC+ GEDAAME L G K GFL+K RL Y RN+P ALS
Sbjct: 177 ALIAEVLERGKAVPEVDWCKPGEDAAMEALAGGK-GFLSKARLSKYDAQRNDPTVADALS 235
Query: 271 GLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVRRELADNFCFYQPNYDSLKG 330
LSPYLHFG ++ QR A+EA K + +++ FLEEL+VRREL+DN+C Y NYDSL
Sbjct: 236 NLSPYLHFGHLAPQRAAIEAAKHKSTHKASVEGFLEELVVRRELSDNYCHYVENYDSLDA 295
Query: 331 AWEWARKSLKDHASDKREHIYTKEQFEKAQTAD 363
A++WAR++L DH +DKREH+YTKEQFEK T D
Sbjct: 296 AYDWARQTLNDHRNDKREHVYTKEQFEKGATHD 328
>gi|255070203|ref|XP_002507183.1| predicted protein [Micromonas sp. RCC299]
gi|226522458|gb|ACO68441.1| predicted protein [Micromonas sp. RCC299]
Length = 579
Score = 356 bits (913), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 190/367 (51%), Positives = 247/367 (67%), Gaps = 31/367 (8%)
Query: 11 VQPGRIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQ 70
V R+RVLK+G + GPV+YW RDQRVRDNWALI+A + AN+ PV V F+L +
Sbjct: 5 VNEKRVRVLKEGKVGT--GPVIYWCSRDQRVRDNWALIYACETANETGAPVVVVFSLVTR 62
Query: 71 FLGAKARQLGFMLRGLR-----LLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLV 125
FLGA ARQ FML+GLR LL +NI+ F L +G+ +P F +ECGASL+V
Sbjct: 63 FLGAGARQFCFMLKGLREMEQALLAKNIK------FVLLEGDPSLTVPRFAKECGASLIV 116
Query: 126 TDFSPLREIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLP 185
D SPLR R + I + V +HEVDAHNVVPVW AS+KLE A+TLRGK+ KL P
Sbjct: 117 ADQSPLRLGRTWRVAIASSVD--CPLHEVDAHNVVPVWEASQKLEVGARTLRGKLAKLYP 174
Query: 186 EYLIDYPMLEQPI--EKWTGTRQS------IDWDSIIAAVLRKGAEVPEIGWCESGEDAA 237
E+L+++P E P+ E W + IDW+++I GA VPE+ W GE AA
Sbjct: 175 EFLVEFP--ETPVVKETWPCAAAAALPTIGIDWEALIVRARNDGAAVPEVTWAVPGEFAA 232
Query: 238 MEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLC 297
L + FLT+RLK Y RN+P KP+ALSGLSPYLHFGQISAQRCALEAR+ K
Sbjct: 233 HATL----EHFLTRRLKYY-EHRNDPAKPQALSGLSPYLHFGQISAQRCALEARRYAKSS 287
Query: 298 PEAIDTFLEELIVRRELADNFCFYQPNYDSLKG-AWEWARKSLKDHASDKREHIYTKEQF 356
+A+D FLEELIVRRELADNFC+Y P YD+++G +EWA++++++H+ DKR ++Y+ +QF
Sbjct: 288 NKAVDVFLEELIVRRELADNFCWYSPKYDTIEGQKYEWAKETVREHSKDKRAYLYSLQQF 347
Query: 357 EKAQTAD 363
E +T D
Sbjct: 348 ENGETHD 354
>gi|384252096|gb|EIE25573.1| CPD photolyase [Coccomyxa subellipsoidea C-169]
Length = 447
Score = 352 bits (902), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 180/331 (54%), Positives = 235/331 (70%), Gaps = 6/331 (1%)
Query: 35 MFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQRNIE 94
M RDQRV+DNWAL+HA + A K++ PVAV FNL +L A ARQ GFMLRGL+L+Q +E
Sbjct: 1 MSRDQRVQDNWALLHAAEVAAKSHAPVAVVFNLVPSYLNAGARQFGFMLRGLKLMQPKLE 60
Query: 95 ETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICNRVSDSVTIHEV 154
I FFL +G+ +P V+ GASLLVTDF+PLR R+ +D++ ++S V HEV
Sbjct: 61 -ALNIPFFLLKGDPVQTVPELVQRTGASLLVTDFAPLRLGRQWRDQVAEKLS--VPFHEV 117
Query: 155 DAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPML-EQPIEKWTGTRQSIDWDSI 213
DAHNVVP W AS+K EY A+T+R KI++ LPE+L YP L +QP + ++DWD+
Sbjct: 118 DAHNVVPCWEASDKREYGARTIRPKIHRQLPEFLQPYPDLGKQPKWELDVKPDAVDWDAE 177
Query: 214 IAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTK-RLKNYPTDRNNPLKPRALSGL 272
IAAV+ +G +VPE+ W + GEDAAME L G K GFL+K RL Y T RNNP P+ALS L
Sbjct: 178 IAAVVERGKDVPEVDWVKPGEDAAMEALLGEK-GFLSKERLSIYNTKRNNPNFPKALSQL 236
Query: 273 SPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVRRELADNFCFYQPNYDSLKGAW 332
SP+LHFG +SAQR ALEA K R E ++ F EE +VRREL+DN+CFY PNYD+L +
Sbjct: 237 SPFLHFGHLSAQRAALEASKLRSKFKEGVEAFNEECVVRRELSDNYCFYTPNYDTLDACY 296
Query: 333 EWARKSLKDHASDKREHIYTKEQFEKAQTAD 363
WAR++L+ H +DKRE IYT+E+ E+ +T D
Sbjct: 297 PWARETLQKHTADKREFIYTREELEEGKTHD 327
>gi|424513339|emb|CCO65961.1| CPD photolyase [Bathycoccus prasinos]
Length = 645
Score = 335 bits (858), Expect = 3e-89, Method: Compositional matrix adjust.
Identities = 180/364 (49%), Positives = 240/364 (65%), Gaps = 19/364 (5%)
Query: 11 VQPGRIRVLK-QGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFD 69
V P R+ ++ Q L + GP+VYWM RDQRV DNWA+++A++ ANK P+ V FN+
Sbjct: 136 VHPDRVMLINDQPILREGNGPIVYWMSRDQRVNDNWAMLYAIELANKEKKPLVVVFNVVT 195
Query: 70 QFLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDN--IPNFVRECGASLLVTD 127
+FLGA ARQ GFMLRGLR ++ +EE I F L G E N I F E AS +VTD
Sbjct: 196 KFLGAGARQFGFMLRGLREVESALEER-DIPFKLLHGGDEPNAEIEKFCNEVNASAVVTD 254
Query: 128 FSPLREIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEY 187
FSPLR + +D SV + VDAHN+VP WVAS KLE A+TLRGK+ KL ++
Sbjct: 255 FSPLRLGLKWRDDFAKETKRSVRV--VDAHNIVPCWVASPKLEVGARTLRGKLAKLYGDF 312
Query: 188 LI----DYPMLEQPIEKWTGTRQSI--DWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVL 241
++ ++P +E +S+ DWD ++ L +G +VPE+ W GE AAM VL
Sbjct: 313 MVPFPDNFPNVENKDAALHAKIKSVKTDWDDVLGQALERGKDVPEVTWAVPGEKAAMAVL 372
Query: 242 KGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLC-PEA 300
D FLTKR+ Y RN+P KP+ALSGLSPYLHFGQIS QRCA++A +A+K +A
Sbjct: 373 ----DNFLTKRMSLYGL-RNDPAKPQALSGLSPYLHFGQISGQRCAMKALEAKKGSNGKA 427
Query: 301 IDTFLEELIVRRELADNFCFYQPNYDSLKG-AWEWARKSLKDHASDKREHIYTKEQFEKA 359
+D F EEL+VRRELADNFC+Y P YD+++G ++WA+ +L+ HA DKRE+ YT E+FE+A
Sbjct: 428 VDVFFEELVVRRELADNFCYYSPQYDTIEGQKYDWAKDTLRMHAGDKREYTYTYEEFEQA 487
Query: 360 QTAD 363
+T D
Sbjct: 488 KTHD 491
>gi|145345173|ref|XP_001417095.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144577321|gb|ABO95388.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 506
Score = 322 bits (824), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 171/364 (46%), Positives = 231/364 (63%), Gaps = 11/364 (3%)
Query: 6 PPSTAVQPGRIRVLKQGSLDKK--RGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAV 63
P + R R L +G+ + PVVYW+ RDQRVRDNWAL+ A D A N+ PV +
Sbjct: 2 PSALCASKKRYRALTRGTKPEAGPNAPVVYWLSRDQRVRDNWALLRACDVARANDAPVVI 61
Query: 64 AFNLFDQFLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASL 123
AFNL +FLGA ARQ GFMLRGLR L+ + + E I ++ GA
Sbjct: 62 AFNLLTKFLGAGARQFGFMLRGLRELEGAAKAKNVTFAMTYGDEPAIAIDALAKKIGAKT 121
Query: 124 LVTDFSPLREIRRCKDKICNRV-SDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINK 182
+V DFSPLR+ + + ++ + S E DAHNVVP W AS+KLE A+TLRG++ K
Sbjct: 122 IVCDFSPLRDGLKWRKELAALCEARSAHCEECDAHNVVPCWEASDKLEVGARTLRGRLAK 181
Query: 183 LLPEYLIDYPMLEQPIEKWTG-TRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVL 241
PE+L ++P + + K++G ++ WD IIA L +G VPE+ W GE AA VL
Sbjct: 182 RYPEFLHEFPEVPDDLPKYSGPALDAVKWDDIIAEALSRGQAVPEVTWAIPGETAAHAVL 241
Query: 242 KGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKA-RKLCPEA 300
D F+ R+K Y RN+P KP+ALSGLSP+LHFGQIS QRCALEA+KA K P A
Sbjct: 242 ----DDFVNSRMKLY-EKRNDPSKPQALSGLSPWLHFGQISGQRCALEAKKAVGKASPPA 296
Query: 301 IDTFLEELIVRRELADNFCFYQPNYDSLKG-AWEWARKSLKDHASDKREHIYTKEQFEKA 359
++F EEL+VRREL+DNFC+Y P YD ++G ++WA+ +L+ HASDKR ++Y+ E+ E+A
Sbjct: 297 YESFFEELVVRRELSDNFCYYSPKYDQIEGQKYDWAKDTLRLHASDKRPYLYSLEELERA 356
Query: 360 QTAD 363
+T D
Sbjct: 357 KTHD 360
>gi|255078656|ref|XP_002502908.1| DNA photolyase [Micromonas sp. RCC299]
gi|226518174|gb|ACO64166.1| DNA photolyase [Micromonas sp. RCC299]
Length = 478
Score = 310 bits (794), Expect = 7e-82, Method: Compositional matrix adjust.
Identities = 183/375 (48%), Positives = 228/375 (60%), Gaps = 30/375 (8%)
Query: 13 PGRIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFL 72
P R+R L+ G + GPVVYWM RDQR DNWAL HA+ A ++ P+ V F L +F
Sbjct: 1 PRRVRSLRGGDVPVGEGPVVYWMSRDQRAMDNWALCHALAVAREHRRPLHVVFALVPEFA 60
Query: 73 GAKARQLGFMLRGLRLLQRNIEETFQILFFLFQG-EAEDNIPNFVRECGASLLVTDFSPL 131
A ARQ FMLRGLR L+ + + I F L QG + ++P G S+LVTDFSPL
Sbjct: 61 NAGARQYCFMLRGLRELESRLRD-LGIPFHLAQGPDPGVSVPAAAERLGCSMLVTDFSPL 119
Query: 132 REIRRCKDKICNRVSD-SVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLID 190
R R +D + + V + EVDAHNVVP WVASEK EY+A+T+R KIN L ++L D
Sbjct: 120 RIGRAWRDSVTTLLCPVDVPVAEVDAHNVVPAWVASEKQEYAARTIRKKINGRLTDFLTD 179
Query: 191 YPMLE---------------QPIEKWTGTRQSIDWDSII-AAVLRKGAEVPEIGWCES-- 232
+P +E P+ + SIDWD +I AA G VPE+
Sbjct: 180 FPTVEDVREAATEAAAGAEKHPVR----SAGSIDWDGLIDAARAGAGGAVPEVLSPSPPR 235
Query: 233 ----GEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCAL 288
GE AA+ L G+ FL RL Y + RN+P P ALSGLSPYLHFGQ+SAQRCA+
Sbjct: 236 SRAPGETAALAALFGTSASFLPNRLALYGS-RNDPNVPEALSGLSPYLHFGQLSAQRCAV 294
Query: 289 EARKARKLCPEAIDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKRE 348
EA K R PEA+D+FLEELIVRRELADNFC + P+YDS+ GA WAR+SL HASD RE
Sbjct: 295 EATKHRAKHPEAVDSFLEELIVRRELADNFCLHNPHYDSIAGAPGWARESLALHASDARE 354
Query: 349 HIYTKEQFEKAQTAD 363
YT E+ E ++T D
Sbjct: 355 FAYTLEELEHSRTHD 369
>gi|327284572|ref|XP_003227011.1| PREDICTED: deoxyribodipyrimidine photo-lyase-like [Anolis
carolinensis]
Length = 535
Score = 303 bits (775), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 163/351 (46%), Positives = 226/351 (64%), Gaps = 10/351 (2%)
Query: 15 RIRVLKQGSLDKKRGP--VVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFL 72
R+R++ + S D K G ++YWM RDQRV+DNWA ++A A K N+P+ VAF L +FL
Sbjct: 82 RVRMISENS-DLKEGAQGILYWMSRDQRVQDNWAFLYAQRLALKQNLPLHVAFCLVPKFL 140
Query: 73 GAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLR 132
A RQ GFML+GL+ + +E I F L G A+D +P FV + + +VTDF+PLR
Sbjct: 141 EATIRQFGFMLKGLKEVAEECQE-LSIPFHLLIGFAKDTLPPFVAKHNIAGVVTDFAPLR 199
Query: 133 EIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYP 192
+ ++ R+ V +VDAHNVVP WVASEK EY A+T+R KI+ L E+L +P
Sbjct: 200 VPMQWVQEVQERLPPDVPFVQVDAHNVVPCWVASEKQEYGARTIRRKIHDRLCEFLTGFP 259
Query: 193 MLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKR 252
+ Q + + IDWD+ +A L VPE+ W + G A + VL F+ +R
Sbjct: 260 PVIQHPHQAASQAEPIDWDAC-SASLEVDRSVPEVEWAKPGSAAGLLVL----GEFVQER 314
Query: 253 LKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVRR 312
LK + +DRNNP + ALS LSP+ HFGQ+S QR LE RK R C E+++ F+EE ++RR
Sbjct: 315 LKFFSSDRNNPNRA-ALSNLSPWFHFGQVSVQRAILEVRKHRTRCRESVEAFIEEALIRR 373
Query: 313 ELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTAD 363
ELADNFCFY PNYD ++GA+EWA+ +LK HA+DKR H+YT +Q E+ +T D
Sbjct: 374 ELADNFCFYNPNYDKVEGAYEWAKTTLKLHATDKRPHLYTLKQLEEGKTHD 424
>gi|73668073|ref|YP_304088.1| deoxyribodipyrimidine photo-lyase type II [Methanosarcina barkeri
str. Fusaro]
gi|72395235|gb|AAZ69508.1| Deoxyribodipyrimidine photo-lyase type II [Methanosarcina barkeri
str. Fusaro]
Length = 462
Score = 296 bits (758), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 170/368 (46%), Positives = 229/368 (62%), Gaps = 24/368 (6%)
Query: 11 VQPGRIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQ 70
+ P RIR + G K GPV YWM RDQRV DNWAL+ A A + +VPV V F L D+
Sbjct: 1 MNPKRIRTILSGKPGK--GPVAYWMSRDQRVEDNWALLFARKIALEADVPVFVVFCLVDK 58
Query: 71 FLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSP 130
FLGA RQ FML+GL+ ++ + +I FF QG+ E+ IP+F+ + G L+TDFSP
Sbjct: 59 FLGAIRRQYEFMLKGLQEVEATLARK-KIPFFFLQGDPEEKIPDFIEKYGIGTLITDFSP 117
Query: 131 LREIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLID 190
LR R +K+ + + V EVDAHNVVP W AS+K EY+A T R K+ +LLPE+L +
Sbjct: 118 LRIKRTWTEKVASSIK--VPFFEVDAHNVVPCWEASKKQEYAAHTFRPKLLRLLPEFLTE 175
Query: 191 YPMLEQPIE------------KWTGTRQSIDWDSIIAAVLRKGAE-VPEIGWCESGEDAA 237
YP LE +E +++ ++S + L K A +P++ E+GE AA
Sbjct: 176 YPELETNLEFPEIAVRSGKAERFSEVQKSGIGTRLPGEFLEKKAGFLPDLALFEAGETAA 235
Query: 238 MEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLC 297
+V+ D FLT +L +Y + RN+P K ALS LSPYLHFGQISAQR AL+ KA K
Sbjct: 236 RKVM----DEFLTNKLDSYSSLRNDPTKD-ALSNLSPYLHFGQISAQRVALKVEKA-KAD 289
Query: 298 PEAIDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFE 357
E+ FL+EL+VR+ELADNFC+Y P YDS G +WA+K+L H D+R HI+T E+ E
Sbjct: 290 LESKRVFLDELLVRKELADNFCYYNPFYDSFDGFPDWAKKTLNSHRRDQRSHIFTLEELE 349
Query: 358 KAQTADPV 365
+T DP+
Sbjct: 350 TGRTYDPL 357
>gi|118175518|gb|ABK76277.1| CPD photolyase [Dunaliella salina]
Length = 529
Score = 295 bits (754), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 166/368 (45%), Positives = 212/368 (57%), Gaps = 35/368 (9%)
Query: 30 PVVYWMFRDQRVRDNWALIHAVDQANKN--------------------------NVPVAV 63
PVVYWM RD RV DNWAL+ +A + P+ V
Sbjct: 51 PVVYWMSRDMRVSDNWALLQGCQEALQRLQLASHADTAAAAAAATAAHSSPALAQPPLVV 110
Query: 64 AFNLFDQFLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASL 123
AFNL QFLGA AR FML+GLR L+ + + F I F+L +G+ ED IP V A L
Sbjct: 111 AFNLVPQFLGAGARSFCFMLKGLRELETKLRQ-FNIPFYLLRGQPEDTIPQLVDALRAGL 169
Query: 124 LVTDFSPLREIRRCKDKICNRV-SDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINK 182
+V+D+SPLR ++ K ++ ++ + V VDAHNVVP +AS K EY+A+T+R KI K
Sbjct: 170 VVSDYSPLRLSKQWKQQVAAKLQAKGVGFQVVDAHNVVPAKIASNKREYAARTIRPKIEK 229
Query: 183 LLPEYLIDYPMLEQPIEKWTGTR-----QSIDWDSIIAAVLRKGAEVPEIGWCESGEDAA 237
LLPE+LI++P P T + IDW +++A V GA VPE+ W GE AA
Sbjct: 230 LLPEFLIEFPNQGLPPIMPTAGQGPHPPTPIDWPALLAEVTEAGAAVPEVDWITPGEAAA 289
Query: 238 MEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLC 297
L GS+ T R+ Y RN+P LS LSPYLHFGQ+SAQR ALEA K R
Sbjct: 290 RAALDGSQGFLTTPRIAQYHVKRNDPSCTTGLSNLSPYLHFGQLSAQRAALEASKLRSRH 349
Query: 298 PEAIDTFLEELIVRRELADNFCFYQPNYDSL--KGAWEWARKSLKDHASDKREHIYTKEQ 355
EA+D +LEELIVRRELADNFC + P+YD L A++WA KSL+ H D R YT++Q
Sbjct: 350 REAVDRYLEELIVRRELADNFCEHCPDYDKLVPGTAYDWALKSLEKHKRDPRPITYTRQQ 409
Query: 356 FEKAQTAD 363
E T D
Sbjct: 410 LESGHTGD 417
>gi|340384751|ref|XP_003390874.1| PREDICTED: deoxyribodipyrimidine photo-lyase-like [Amphimedon
queenslandica]
Length = 462
Score = 293 bits (751), Expect = 8e-77, Method: Compositional matrix adjust.
Identities = 154/367 (41%), Positives = 229/367 (62%), Gaps = 11/367 (2%)
Query: 3 SLTPPSTAVQPGRIRVLKQGSLDKK---RGPVVYWMFRDQRVRDNWALIHAVDQANKNNV 59
SL ++ R R++ + + K +GPV+YWM RDQRV+DNW L+++ + ANK+ V
Sbjct: 19 SLLIAGSSFNMKRCRLITKPTAGKSSIVKGPVLYWMSRDQRVQDNWGLVYSQELANKHGV 78
Query: 60 PVAVAFNLFDQFLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVREC 119
P+ VAF L +FL A RQ FM+ GL+ +++ + + +I F L G+A+ +P F+ +
Sbjct: 79 PLLVAFTLVPKFLDATWRQYSFMMSGLQEVEKELLK-LKIPFHLLLGKAQSCLPPFIAKE 137
Query: 120 GASLLVTDFSPLR-EIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRG 178
S++V DFSPLR + K+ V + +VDAHN+VPVW+AS+K EY+A+TLR
Sbjct: 138 SVSVVVCDFSPLRVSLGWVKETGAELDKIKVPLVQVDAHNIVPVWLASDKQEYAARTLRN 197
Query: 179 KINKLLPEYLIDYPMLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAM 238
KI+K LPE+L ++P++ T +S +W + L V E+ W G +A +
Sbjct: 198 KIHKFLPEFLTEFPLVTLHTHNSKLTMKSTNWIKAKES-LEVDMTVSEVSWATPGTNAGL 256
Query: 239 EVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCP 298
+VL D F TKRLK + RN+P K +LS LSP+ HFGQ+ QR L+ +
Sbjct: 257 KVL----DDFCTKRLKFFAAQRNDPNK-DSLSNLSPWFHFGQVGVQRAILKVKSYSSKHS 311
Query: 299 EAIDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEK 358
E++ ++EE +VRRELADNFC+Y P+YDS+ GA +WA+ +LK H DKRE+IYT+EQFE
Sbjct: 312 ESVSAYIEEAVVRRELADNFCYYNPHYDSISGAAQWAQDTLKAHKKDKREYIYTQEQFES 371
Query: 359 AQTADPV 365
+ T DP+
Sbjct: 372 SSTHDPL 378
>gi|157278339|ref|NP_001098271.1| photolyase [Oryzias latipes]
gi|1401038|dbj|BAA05043.1| photolyase [Oryzias latipes]
Length = 504
Score = 290 bits (743), Expect = 7e-76, Method: Compositional matrix adjust.
Identities = 161/346 (46%), Positives = 221/346 (63%), Gaps = 16/346 (4%)
Query: 19 LKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLF-DQFLGAKAR 77
++QGS G V+YWM RDQRV+DNWALI A A K ++P+ V F L + + R
Sbjct: 65 VRQGS-----GGVLYWMLRDQRVQDNWALIRAQQLAAKESLPLHVCFCLVVPKSELSTLR 119
Query: 78 QLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRC 137
F+L+GL +Q+ + I F L G A D +P FV +VTDFSPLRE +
Sbjct: 120 HYSFLLKGLEEVQKECKH-LNIQFHLLHGAAGDVLPGFVTGHNFGAVVTDFSPLREPLQW 178
Query: 138 KDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQP 197
+ + + + + +VDAHN+VP WVAS KLEYSA+T+RGKI LL E+L D+P++++
Sbjct: 179 LEAVKKGLPEDIPFIQVDAHNIVPCWVASPKLEYSARTIRGKITNLLSEFLTDFPLVDKH 238
Query: 198 IEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLKNYP 257
T T +++DWD +A+ L+ V E + G +A + +L + F+ RLK +
Sbjct: 239 PFSATKTAKAVDWDKTLAS-LKVDRTVGEPKLAKPGTEAGLAML----ESFIDVRLKLFG 293
Query: 258 TDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVRRELADN 317
T RN+P ALS LSP+L FGQ+SAQR AL+ RK ++ F+EEL+VRREL DN
Sbjct: 294 TQRNDP-NAAALSQLSPWLRFGQLSAQRVALQVRKN---SSPSVPAFIEELVVRRELTDN 349
Query: 318 FCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTAD 363
FCFY NYDS+ GA+EWA+K+LKDHA DKRE++YT+EQFEKAQT D
Sbjct: 350 FCFYNKNYDSVTGAYEWAQKTLKDHAKDKREYLYTREQFEKAQTHD 395
>gi|440797984|gb|ELR19058.1| type II CPD DNA photolyase [Acanthamoeba castellanii str. Neff]
Length = 577
Score = 290 bits (741), Expect = 9e-76, Method: Compositional matrix adjust.
Identities = 157/357 (43%), Positives = 225/357 (63%), Gaps = 16/357 (4%)
Query: 15 RIRVLKQ--GSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFL 72
R+RVL + G +K VVYWM RDQR DNWAL++A A K+ VP+AVAF L F
Sbjct: 31 RVRVLHEPKGKEGRKATGVVYWMSRDQRANDNWALLYAQQLAVKSGVPLAVAFCLLPSFK 90
Query: 73 GAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLR 132
GA R GFM+RGL +++ + + I L +G +D +P ++ GAS LV DFSPLR
Sbjct: 91 GASIRHFGFMVRGLTEVEKTLN-SRGIPMLLLKGLPQDELPKALKTYGASHLVCDFSPLR 149
Query: 133 EIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYP 192
R+ ++++ + + ++EVDAHN+VP+W S K EY+A+T+R KI+K +P+YL ++P
Sbjct: 150 IGRKWREEVAE--ATNAFVYEVDAHNLVPLWEVSPKQEYAARTIRPKIHKQVPKYLHEFP 207
Query: 193 MLEQPIE-----KWTGTRQSIDWDSIIAAVLRK-GAEVPEIGWCESGEDAAMEVLKGSKD 246
L + KW+ ++WDS+ + V VPE+ W + GE +L D
Sbjct: 208 ALRDHSKRNGGNKWSPAIPEVNWDSVWSYVREHVDDSVPELDWLKPGEKEGRRML----D 263
Query: 247 GFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLE 306
FLTK+LK+Y + RN P++ S LS YLH+GQ+SAQR LEA K + E+ + + E
Sbjct: 264 LFLTKKLKDYNSKRNTPVED-GQSNLSAYLHYGQLSAQRIILEAMKHKAKAKESYEAYFE 322
Query: 307 ELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTAD 363
ELIVRRELADNFC+Y +YD +G +WARKSL++HA+DKR +YT E+ E+ +T D
Sbjct: 323 ELIVRRELADNFCYYNQHYDQFEGFPDWARKSLEEHAADKRSSLYTYEELERGKTHD 379
>gi|147904876|ref|NP_001089127.1| CPD photolyase-like [Xenopus laevis]
gi|77799777|dbj|BAE46749.1| CPD photolyase-like [Xenopus laevis]
gi|126631428|gb|AAI33745.1| LOC733427 protein [Xenopus laevis]
Length = 557
Score = 290 bits (741), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 154/353 (43%), Positives = 224/353 (63%), Gaps = 10/353 (2%)
Query: 15 RIRVLK-QGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLG 73
R R+L + L + +VYWM RDQRV+DNWA ++A A K +P+ V F L +FL
Sbjct: 104 RARLLSTEADLKEDAQGIVYWMSRDQRVQDNWAFLYAQRLALKQKLPLHVTFCLVPKFLD 163
Query: 74 AKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLRE 133
A R GFML+GL+ + +E I F L G A+D +PNFV++ +VTDFSPLR
Sbjct: 164 ATIRHYGFMLKGLQEVAEECKE-LNIPFHLLIGYAKDILPNFVKDHAIGGVVTDFSPLRV 222
Query: 134 IRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYP- 192
+ + + + + V + +VDAHN+VP WVAS K EY A+T+R K++ L ++L ++P
Sbjct: 223 PLQWVEDVGKCLPEDVPLVQVDAHNIVPCWVASIKQEYGARTIRRKVHDQLSQFLTEFPP 282
Query: 193 MLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKR 252
+++ P E +++DWD + L V E+ W + G +A VL+ F+++R
Sbjct: 283 VIKHPYEP-KFEAETVDWDKCYKS-LEVDRTVGEVEWAKPGTNAGFNVLQS----FISER 336
Query: 253 LKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVRR 312
LK++ +DRNNP ALS LSP+ HFGQ+S QR LE +K R E++D+F+EE +VRR
Sbjct: 337 LKHFNSDRNNP-NQNALSNLSPWFHFGQLSVQRAILEVQKYRSKFKESVDSFVEEAVVRR 395
Query: 313 ELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPV 365
ELADNFCFY NYD ++GA++WA+ +LKDHA DKR H+YT E+ E +T DP+
Sbjct: 396 ELADNFCFYNKNYDKIEGAYDWAKNTLKDHAKDKRTHLYTLEKLEAGKTHDPL 448
>gi|340380472|ref|XP_003388746.1| PREDICTED: deoxyribodipyrimidine photo-lyase-like [Amphimedon
queenslandica]
Length = 489
Score = 290 bits (741), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 153/367 (41%), Positives = 229/367 (62%), Gaps = 11/367 (2%)
Query: 3 SLTPPSTAVQPGRIRVLKQGSLDKK---RGPVVYWMFRDQRVRDNWALIHAVDQANKNNV 59
SL ++ R R++ + + K +GPV+YWM RDQRV+DNW L+++ + ANK+ V
Sbjct: 19 SLLIAGSSFNMKRCRLITKPTAGKSSIVKGPVLYWMSRDQRVQDNWGLVYSQELANKHGV 78
Query: 60 PVAVAFNLFDQFLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVREC 119
P+ VAF L +FL A RQ FM+ GL+ +++ + + +I F L G+A+ +P+F+ +
Sbjct: 79 PLLVAFTLVPKFLDATWRQYSFMMSGLQEVEKELLK-LKIPFHLLLGKAQSCLPSFIAKE 137
Query: 120 GASLLVTDFSPLR-EIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRG 178
S++V DFSPLR + K+ V + +VDAHN+VPVW+AS+K EY+A+T+R
Sbjct: 138 SVSVVVCDFSPLRVPLGWVKETGAELDKIKVPLVQVDAHNIVPVWLASDKQEYAARTIRN 197
Query: 179 KINKLLPEYLIDYPMLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAM 238
KI+K LPE+L ++P + T +S +W + L V E+ W G +A +
Sbjct: 198 KIHKFLPEFLTEFPPVTVHTHNSKLTMKSTNWIKARES-LEVDMTVSEVSWATPGTNAGL 256
Query: 239 EVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCP 298
+VL D F TKRLK + RN+P K +LS LSP+ HFGQ+ QR L+ +
Sbjct: 257 KVL----DDFCTKRLKFFAAQRNDPNKD-SLSNLSPWYHFGQVGVQRAILKVKSYSSKHS 311
Query: 299 EAIDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEK 358
E++ ++EE +VRRELADNFC+Y P+YDS+ GA +WA+ +LK H DKRE+IYT+EQFE
Sbjct: 312 ESVSAYIEEAVVRRELADNFCYYNPHYDSISGAAQWAQDTLKAHKKDKREYIYTQEQFES 371
Query: 359 AQTADPV 365
+ T DP+
Sbjct: 372 SSTHDPL 378
>gi|50752305|ref|XP_422729.1| PREDICTED: deoxyribodipyrimidine photo-lyase-like [Gallus gallus]
Length = 499
Score = 289 bits (740), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 155/352 (44%), Positives = 223/352 (63%), Gaps = 8/352 (2%)
Query: 15 RIRVLKQGS-LDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLG 73
R R++ +GS L + ++YWM RDQRV+DNWA ++A A K +P+ V F L FL
Sbjct: 49 RARLVSRGSELKEGAECILYWMCRDQRVQDNWAFLYAQRLALKQELPLRVCFCLVPAFLD 108
Query: 74 AKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLRE 133
A R GFMLRGLR + + E I F + G +D +P+FV E G LVTDF PLR
Sbjct: 109 ATIRHYGFMLRGLREVAKECAE-LDIPFHVLLGCPKDVLPSFVVEHGVGGLVTDFCPLRV 167
Query: 134 IRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPM 193
R+ +++ R+ + V +VDAHN+VP WVAS K EYSA+T+R KI+ LPE+L ++P
Sbjct: 168 PRQWVEEVKERLPEDVPFAQVDAHNIVPCWVASPKQEYSARTIRAKIHSQLPEFLTEFPP 227
Query: 194 LEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRL 253
+ + + I WD+ ++ L+ V E+ W G A + +L+ F+T+RL
Sbjct: 228 VIRHPHPPPNPPEPIAWDACYSS-LQVDRTVTEVAWATPGTAAGLAMLQS----FITERL 282
Query: 254 KNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVRRE 313
K++ + RN+P K ALS LSP+ HFGQ+S QR LE +K R++ E++D F+EE +VRRE
Sbjct: 283 KSFGSQRNDPNKA-ALSNLSPWFHFGQVSTQRAILEVQKHRRVYKESVDAFVEEAVVRRE 341
Query: 314 LADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPV 365
LA+NFC+Y NYDS++GA++WA+ +LK HA DKR +Y Q E+A T DP+
Sbjct: 342 LAENFCYYNENYDSVRGAYDWAQSTLKLHAKDKRPFLYKLPQLEQATTHDPL 393
>gi|397690418|ref|YP_006527672.1| deoxyribodipyrimidine photolyase [Melioribacter roseus P3M]
gi|395811910|gb|AFN74659.1| deoxyribodipyrimidine photolyase [Melioribacter roseus P3M]
Length = 445
Score = 288 bits (737), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 157/356 (44%), Positives = 230/356 (64%), Gaps = 17/356 (4%)
Query: 11 VQPGRIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQ 70
V P R+R LK L K G V+YWM RDQRV DNWAL+ A +A + +P+ V FNL +
Sbjct: 2 VLPKRVRKLKDAEL--KNGAVIYWMQRDQRVYDNWALLFAYHRAKERQLPLIVIFNLVPE 59
Query: 71 FLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSP 130
FLGA RQ FM+ GL+ +++ + + I F L G IP FV+E G S L+TDF+P
Sbjct: 60 FLGASLRQYSFMINGLKQVEKKLSK-LNIGFKLLSGNPAVTIPAFVKESGCSELITDFNP 118
Query: 131 LREIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLID 190
LR R+ K ++ +++ + ++VDAHN+VP ++AS K E++A T R KI KLLPE++ D
Sbjct: 119 LRITRKWKKEVHSKIK--IPFYDVDAHNIVPCFLASGKQEFAAYTFRPKIQKLLPEFMDD 176
Query: 191 YPMLEQ-PIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFL 249
+P L++ P+ ++T + DW+++ ++ A V EI W GE+AA E+L D F+
Sbjct: 177 FPPLKKMPVNEFTNIKN--DWENL---KIKTDASVQEIDWILPGEEAAFEIL----DSFI 227
Query: 250 TKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELI 309
+L+ Y +N+P ALS LS +LHFG ISAQR ALE + R ++ ++FLEELI
Sbjct: 228 ESKLEFYSDKKNDP-NENALSNLSIHLHFGHISAQRIALEILR-RTEHSKSRESFLEELI 285
Query: 310 VRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPV 365
VR+EL+DNFC+Y YDS +G EWA+K+L +H DKRE++Y+ E+ E+ +T D +
Sbjct: 286 VRKELSDNFCYYNKKYDSFEGFPEWAQKTLNEHRRDKREYVYSLEELEEGKTHDSL 341
>gi|385809101|ref|YP_005845497.1| Deoxyribodipyrimidine photolyase [Ignavibacterium album JCM 16511]
gi|383801149|gb|AFH48229.1| Deoxyribodipyrimidine photolyase [Ignavibacterium album JCM 16511]
Length = 447
Score = 286 bits (733), Expect = 8e-75, Method: Compositional matrix adjust.
Identities = 161/353 (45%), Positives = 224/353 (63%), Gaps = 13/353 (3%)
Query: 11 VQPGRIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQ 70
V R+R+L++G ++ GP+VYWM RDQRV DNWALI + A + P+ V FNL
Sbjct: 2 VNGKRVRLLQKG--NETPGPIVYWMSRDQRVHDNWALIFSQQLALERQKPLIVLFNLVPN 59
Query: 71 FLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSP 130
FL A RQ GFML+GL ++ +++ ++I F L G E+ IP+ +++ AS+LV+DF P
Sbjct: 60 FLEATIRQYGFMLKGLEQMEVELKK-YKIPFVLSLGNPENEIPDLLKKINASVLVSDFDP 118
Query: 131 LREIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLID 190
L+ R K + ++S + +EVDAHN+VP S K+E+ A T+R KI+K LPE+L +
Sbjct: 119 LKIKRIWKRDVAKKIS--IPFYEVDAHNIVPCLYVSNKVEFGAYTIRSKIHKALPEFLDE 176
Query: 191 YPMLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLT 250
+P L + ++ +SIDW+ + L +V EI W + GE A VLK FL
Sbjct: 177 FPKL-KVMKNHELNSESIDWEKAEKS-LNINRDVKEIDWLKPGEANAQIVLKD----FLE 230
Query: 251 KRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIV 310
R NY DRN+P K ALS LSPYLHFGQISAQR AL + P A +FLEELIV
Sbjct: 231 NRFDNYAEDRNDPNK-NALSNLSPYLHFGQISAQRVALTVEQFYGNHPSA-KSFLEELIV 288
Query: 311 RRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTAD 363
RREL+DNFC++ P YDS +G +WA+K+L +H DKRE +Y+ E FE+A+T +
Sbjct: 289 RRELSDNFCYFNPKYDSFEGFPDWAKKTLNEHRKDKREFVYSLEDFEQAKTHE 341
>gi|348501075|ref|XP_003438096.1| PREDICTED: deoxyribodipyrimidine photo-lyase-like [Oreochromis
niloticus]
Length = 511
Score = 285 bits (730), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 157/346 (45%), Positives = 216/346 (62%), Gaps = 13/346 (3%)
Query: 19 LKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLF-DQFLGAKAR 77
+KQGS V+YWM RDQRV+DNWALIHA A K N+P+ V F L + + R
Sbjct: 69 IKQGSEG-----VLYWMLRDQRVQDNWALIHAQRLAVKENLPLHVCFCLVVPKSELSTLR 123
Query: 78 QLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRC 137
FML+GL + + E+ I F L G +P FV +VTDFSP+RE +
Sbjct: 124 HYSFMLKGLEEVAKECEQ-LNIQFHLLHGAPGKVLPGFVSNRSFGAVVTDFSPIREPLQW 182
Query: 138 KDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQP 197
+ + ++ + +VDAHN+VP WVAS KLEYSA+T+RGKI LL E+L D+P+++
Sbjct: 183 LEDVKKKLPKDIPFIQVDAHNIVPCWVASPKLEYSARTIRGKITNLLSEFLTDFPLVDAH 242
Query: 198 IEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLKNYP 257
T T + +DWD +A+ L V E W + G M++L + F+ RLK +
Sbjct: 243 PHTATRTAKGVDWDKTLAS-LDVDRTVKEPEWAKPGTKPGMDML----ESFIDVRLKLFG 297
Query: 258 TDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVRRELADN 317
+ RN+P P ALS LSP+L FGQISAQR A + ++ K ++I F+EEL+VRREL DN
Sbjct: 298 SQRNDPNAP-ALSQLSPWLRFGQISAQRVAWQVQRNGKNASQSIPAFIEELVVRRELTDN 356
Query: 318 FCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTAD 363
FCFY YDS++GA+EWA+K+LKDHA D+R ++YT+EQ EKA+T D
Sbjct: 357 FCFYNKKYDSVEGAYEWAQKTLKDHAKDERPYLYTREQLEKAKTHD 402
>gi|326925994|ref|XP_003209191.1| PREDICTED: deoxyribodipyrimidine photo-lyase-like [Meleagris
gallopavo]
Length = 503
Score = 285 bits (729), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 155/352 (44%), Positives = 218/352 (61%), Gaps = 8/352 (2%)
Query: 15 RIRVLKQGS-LDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLG 73
R R++ +GS L + ++YWM RDQRV+DNWA ++A A K +P+ V F L FL
Sbjct: 53 RARLVSRGSELKEGAECILYWMCRDQRVQDNWAFLYAQRLALKQELPLRVCFCLVPTFLD 112
Query: 74 AKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLRE 133
A R GFMLRGLR + E I F L G +D +P+FV E LVTDF PLR
Sbjct: 113 ATIRHYGFMLRGLREVAEECAE-LDIPFHLLLGCPKDVLPSFVVEHSVGGLVTDFCPLRV 171
Query: 134 IRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPM 193
R+ +++ R+ + V +VDAHN+VP WV S K EYSA+T+R KI+ LPE+L ++P
Sbjct: 172 PRQWVEEVKERLPEDVPFAQVDAHNIVPCWVTSPKQEYSARTIRAKIHSKLPEFLTEFPP 231
Query: 194 LEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRL 253
+ + + I WD+ ++ L+ V E+ W G A + +L+ F+TKRL
Sbjct: 232 VIRHPHPPPNPPEPIAWDACYSS-LQVDHTVTEVAWATPGTAAGLAMLQS----FITKRL 286
Query: 254 KNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVRRE 313
K++ + RN+P K ALS LSP+ HFGQ+S QR LE +K R E++D F+EE +VRRE
Sbjct: 287 KSFGSQRNDPNKA-ALSNLSPWFHFGQVSTQRAILEVQKHRCAYKESVDAFVEEAVVRRE 345
Query: 314 LADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPV 365
LA+NFC+Y NYDS++GA++WA+ +LK HA DKR +Y Q E+A T DP+
Sbjct: 346 LAENFCYYNENYDSVRGAYDWAQSTLKLHAKDKRPFLYELPQLEQATTHDPL 397
>gi|405960251|gb|EKC26192.1| Deoxyribodipyrimidine photo-lyase [Crassostrea gigas]
Length = 515
Score = 283 bits (725), Expect = 8e-74, Method: Compositional matrix adjust.
Identities = 155/351 (44%), Positives = 219/351 (62%), Gaps = 10/351 (2%)
Query: 15 RIRVLK--QGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFL 72
RI+VL Q D K G VVYWM RDQRV+DNWA+++A A K VP+ V F L +FL
Sbjct: 63 RIKVLSKVQDFPDGKNG-VVYWMSRDQRVQDNWAMLYAQRLALKMEVPLHVCFCLVPKFL 121
Query: 73 GAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLR 132
A R F+L+GL +++ +E I F L G A+D +P+FV++ ++TDFSPLR
Sbjct: 122 DATIRHYRFILKGLEEVEKECQE-LGISFHLLIGHAKDVLPSFVKDHQIGGVITDFSPLR 180
Query: 133 EIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYP 192
+ + + + +VDAHNVVP W AS KLEY A+T+R KI+ L +YL ++P
Sbjct: 181 VPAEWVSAVSKALPSDIPLCQVDAHNVVPCWEASPKLEYGARTIRNKIHNQLSQYLTEFP 240
Query: 193 MLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKR 252
+ + K Q +DW S L +V E+ W G A + +L + F +R
Sbjct: 241 PVSKHPHKPKAASQPVDW-SKAEDSLEVDRKVTEVDWAVPGSTAGLNML----ESFCHER 295
Query: 253 LKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVRR 312
LK + +DRNNP K ALS LSP++ FGQIS QRC L R+ R E++++++EE I+RR
Sbjct: 296 LKYFGSDRNNPNK-NALSNLSPWIKFGQISVQRCILTVRQYRSKYKESVESYIEEAIIRR 354
Query: 313 ELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTAD 363
EL+DNFCFY NYDS+ GA++WA+++LK HA D+R+++YTKEQ E A+T D
Sbjct: 355 ELSDNFCFYNKNYDSIDGAYDWAKQTLKVHADDERKYVYTKEQLEFAKTHD 405
>gi|170035601|ref|XP_001845657.1| deoxyribodipyrimidine photo-lyase [Culex quinquefasciatus]
gi|167877630|gb|EDS41013.1| deoxyribodipyrimidine photo-lyase [Culex quinquefasciatus]
Length = 510
Score = 283 bits (724), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 152/350 (43%), Positives = 211/350 (60%), Gaps = 8/350 (2%)
Query: 15 RIRVLKQGS-LDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLG 73
RIR+L +++ + VVYWM RD RV+DNWA + A A KN +P+ V F+L +FL
Sbjct: 56 RIRILSDAKEVEEGKAGVVYWMSRDARVQDNWAFLFAQKLAMKNELPLHVCFSLVPKFLE 115
Query: 74 AKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLRE 133
A R FML+GL + + E + I F + G A+D +P FV+ +V DFSPLR
Sbjct: 116 ATIRHFKFMLKGLEEVAKECE-SLNIQFHMLTGMAKDTVPKFVKAHKMGAVVCDFSPLRV 174
Query: 134 IRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPM 193
+ + + + V + +VDAHNVVPVWV SEKLEY+A+T+R K+N L YL +P
Sbjct: 175 PAQWVEDVRKALPAEVPLCQVDAHNVVPVWVTSEKLEYAARTIRTKVNNNLNTYLTQFPP 234
Query: 194 LEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRL 253
+ + K + IDW ++ L+ V E+ W G + L+G F+ KRL
Sbjct: 235 VVKHPHKSKLKAEPIDWPKLLD-TLQVDRTVDEVEWAVPGYTGGVATLQG----FVEKRL 289
Query: 254 KNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVRRE 313
+ + RN+P ALS LSP+ HFGQIS QR L +K K E + +F EE IVRRE
Sbjct: 290 RKFNAKRNDPTDD-ALSNLSPWFHFGQISVQRAILAVKKYGKGFSEGVASFCEEAIVRRE 348
Query: 314 LADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTAD 363
L+DNFC+Y NYD+LKGA++WARK+L DH DKR H+YT++Q E+A+T D
Sbjct: 349 LSDNFCYYNKNYDNLKGAYDWARKTLDDHRKDKRTHVYTRDQLEQAKTHD 398
>gi|464378|sp|P34205.1|PHR_CARAU RecName: Full=Deoxyribodipyrimidine photo-lyase; AltName: Full=DNA
photolyase; AltName: Full=Photoreactivating enzyme
gi|222872|dbj|BAA01987.1| DNA photolyase [Carassius auratus]
Length = 556
Score = 283 bits (723), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 148/345 (42%), Positives = 219/345 (63%), Gaps = 13/345 (3%)
Query: 19 LKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQ 78
+KQGS +YWM RDQRV+DNWALI+A A +P+ + F L ++L A RQ
Sbjct: 103 IKQGS-----DGFLYWMSRDQRVQDNWALIYAQQLALAEKLPLHICFCLVPRYLDATYRQ 157
Query: 79 LGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCK 138
FML+GL+ + + + + I F L GE N+P+FV + +VTDF+PLR +
Sbjct: 158 YAFMLKGLQEVAKECK-SLDIQFHLLSGEPGQNLPSFVEKWKFGAVVTDFNPLRIPLQWI 216
Query: 139 DKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQPI 198
+ + + V +VDAHNVVP W AS KLEY A+T+RGKI KLLPE+L + P+++
Sbjct: 217 ETVKKHLPADVPFIQVDAHNVVPCWEASGKLEYGARTIRGKITKLLPEFLTEIPLVDTHP 276
Query: 199 EKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLKNYPT 258
+ + +DW+ ++++ L V E+ W + G M +L + F+ +RL+ + T
Sbjct: 277 HSASRAAEPVDWEEVLSS-LEVERSVGEVDWAQPGTSGGMNML----ESFIDQRLRLFAT 331
Query: 259 DRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVRRELADNF 318
RNNP ALS LSP++H GQ+SAQR + ++ K E++ +F+EEL+VRRELADNF
Sbjct: 332 HRNNP-NYDALSHLSPWIHTGQLSAQRVVKQVKR-EKNASESVASFIEELVVRRELADNF 389
Query: 319 CFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTAD 363
CFY P+YD++ GA++WA+K+L+DHA D R+++YTKEQ E A+T D
Sbjct: 390 CFYNPSYDNISGAYDWAKKTLQDHAKDSRQYLYTKEQLENAKTHD 434
>gi|260783748|ref|XP_002586934.1| hypothetical protein BRAFLDRAFT_103595 [Branchiostoma floridae]
gi|229272065|gb|EEN42945.1| hypothetical protein BRAFLDRAFT_103595 [Branchiostoma floridae]
Length = 426
Score = 280 bits (717), Expect = 6e-73, Method: Compositional matrix adjust.
Identities = 153/343 (44%), Positives = 208/343 (60%), Gaps = 16/343 (4%)
Query: 22 GSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGF 81
G L + G ++YWM RDQRV+DNWAL+ A A K+ VP+ V F L +FL A R GF
Sbjct: 5 GDLKQNCGGIMYWMSRDQRVQDNWALLFAQRLAMKHKVPLYVCFCLVPKFLDANIRHYGF 64
Query: 82 MLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKI 141
ML+GL +++ + FL P FV E +VTDFSPLR + +
Sbjct: 65 MLKGLEEVEKFPSPDWLCCGFL---------PGFVDEKNIGGVVTDFSPLRTPLKWVHDL 115
Query: 142 CNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQPIEKW 201
++ V +VDAHN+VP W AS K EY A+T+RGKI+ L YL ++P + Q
Sbjct: 116 AGKLPSDVPFVQVDAHNIVPCWEASPKQEYGARTIRGKIHNQLSSYLTEFPPVSQHPHPP 175
Query: 202 TGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLKNYPTDRN 261
+ DW + A+ L+ V E+ W G + +L + F +RLKN+ TDRN
Sbjct: 176 KDKPEPTDWAAARAS-LKVDMTVAEVTWATPGTTGGLRML----ESFCKQRLKNFGTDRN 230
Query: 262 NPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVRRELADNFCFY 321
NP K RALS LSP++HFGQIS QRC L +K R E++D ++EE I+RREL+DNFCFY
Sbjct: 231 NPNK-RALSNLSPWIHFGQISVQRCILTVKKYRSKYKESVDAYIEEAIIRRELSDNFCFY 289
Query: 322 QPN-YDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTAD 363
+ YDS+KGA WA+K+LKDHA DKRE++Y++EQ E+A+T D
Sbjct: 290 NHDKYDSIKGASAWAQKTLKDHAGDKREYLYSREQLEQAKTHD 332
>gi|410924750|ref|XP_003975844.1| PREDICTED: deoxyribodipyrimidine photo-lyase-like [Takifugu
rubripes]
Length = 538
Score = 280 bits (715), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 153/353 (43%), Positives = 216/353 (61%), Gaps = 17/353 (4%)
Query: 19 LKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLF-DQFLGAKAR 77
+KQGS V+YWM RD RV+DNWALIHA A K +P+ V L + + R
Sbjct: 95 IKQGSQG-----VLYWMLRDHRVQDNWALIHAQQLAVKEKLPLHVCVCLHVPKSELSTLR 149
Query: 78 QLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRC 137
FML+GL +++ + + F L G + +P FV E +VTDFSPLRE +
Sbjct: 150 HYSFMLKGLEEVEKECK-ALDVQFHLLHGSVGEVLPGFVSERHLGAVVTDFSPLREPLKW 208
Query: 138 KDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQP 197
D + + + +VDAHN+VP WVAS KLEY+A+T+RGKINK L E+L D+P +E+
Sbjct: 209 LDDLKKEFPQDIPLIQVDAHNIVPCWVASPKLEYAARTIRGKINKHLSEFLTDFPPIEKH 268
Query: 198 IEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLKNYP 257
+ +DW+ +++ L V E W + G A + +L + F+ +RLK +
Sbjct: 269 PHTAEQAAEPVDWEETLSS-LSIDRTVGETEWAKPGAGAGLAML----ESFIDERLKLFD 323
Query: 258 TDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVRRELADN 317
+ RN+P ALS +SP++ FG +SAQR AL+ +++ K A+ +F+EEL+VRREL DN
Sbjct: 324 SQRNDP-NAAALSQMSPWIRFGHVSAQRVALQVQRSGKKAGVAVSSFIEELVVRRELTDN 382
Query: 318 FCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPVSIYLW 370
FCFY NYDS++GA EWARK+LKDHA DKR +IYT+ Q E+AQT D +LW
Sbjct: 383 FCFYNENYDSVEGAHEWARKTLKDHAKDKRPYIYTRRQLEEAQTHD----HLW 431
>gi|47227913|emb|CAF97542.1| unnamed protein product [Tetraodon nigroviridis]
Length = 508
Score = 280 bits (715), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 153/346 (44%), Positives = 214/346 (61%), Gaps = 13/346 (3%)
Query: 19 LKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNL-FDQFLGAKAR 77
++QGS V+YWM RD RV+DNWALIHA A + VP+ V L + + R
Sbjct: 67 MRQGSEG-----VLYWMLRDHRVQDNWALIHARRLALEEKVPLHVCVCLHVPKSQLSTLR 121
Query: 78 QLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRC 137
F+L+GL + + I F L +G A D +P FV E +VTDFSPLRE
Sbjct: 122 HYSFLLKGLEEVAAECK-ALGIQFHLLRGPAGDLLPGFVSEQQLGAVVTDFSPLREPLTW 180
Query: 138 KDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQP 197
+ + ++ V + +VDAHN+VP WVAS KLEY+A+T+RGKI K LPE+L D+P++E+
Sbjct: 181 LEDVKKKLPKDVPLIQVDAHNIVPCWVASPKLEYAARTIRGKITKQLPEFLTDFPLVEKH 240
Query: 198 IEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLKNYP 257
T T + +DW ++++ L V E W G A + +L + F+ RLK +
Sbjct: 241 PHAATRTAKPVDWRELLSS-LGVDRTVGETEWARPGAAAGLAML----ESFIDVRLKRFD 295
Query: 258 TDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVRRELADN 317
+ RN+P ALS LSP++ FG +SAQR AL+ ++ + + +F+EEL+VRREL DN
Sbjct: 296 SQRNDP-NAAALSQLSPWIRFGHVSAQRVALQVQRGGRKLGVGVSSFIEELVVRRELTDN 354
Query: 318 FCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTAD 363
FCFY YDS++GA+EWARK+LKDHA DKR +IYT+EQ EKA+T D
Sbjct: 355 FCFYNEKYDSVEGAYEWARKTLKDHAKDKRPYIYTREQLEKAETHD 400
>gi|357613630|gb|EHJ68626.1| DNA photolyase [Danaus plexippus]
Length = 487
Score = 279 bits (713), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 157/352 (44%), Positives = 217/352 (61%), Gaps = 10/352 (2%)
Query: 14 GRIRVLKQGSL--DKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQF 71
R+R++ Q + D G +VYWM RD RV+DNWA ++A + A KN VP+ V F L ++
Sbjct: 23 SRLRIISQEQMVSDDCEG-IVYWMSRDSRVQDNWAFLYAQELALKNKVPLHVCFCLIAKY 81
Query: 72 LGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPL 131
L A RQ F+++GL + + ++ I F L +G + +P +V + +V DF+PL
Sbjct: 82 LDASVRQFHFLIKGLEKVAADCDK-LNISFHLLEGNGAEVLPQWVIDHRIGAVVCDFNPL 140
Query: 132 REIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDY 191
R + ++ V + +VDAHNVVP WVAS K EYSA+T+R KIN L EYL ++
Sbjct: 141 RVPLGWVEGAKKKLKKDVPLIQVDAHNVVPCWVASNKQEYSARTIRNKINSKLDEYLTEF 200
Query: 192 PMLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTK 251
P + + + + IDWD I V IGW G D A++ LK FL K
Sbjct: 201 PPVIKHPHSSSFKPEPIDWDKAIE-TREADKSVGPIGWAGPGYDNAVKTLKS----FLDK 255
Query: 252 RLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVR 311
RLK + T RN+P + ALS LSP+ HFGQISAQR AL ++ + E+++++LEE IVR
Sbjct: 256 RLKVFATKRNDPTQD-ALSNLSPWFHFGQISAQRVALCVKEYKTKYTESVNSYLEEAIVR 314
Query: 312 RELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTAD 363
RELADNFCFY +YDS+KGA +WA+K+L DH +DKR HIYT EQF KA+T D
Sbjct: 315 RELADNFCFYCEHYDSIKGASQWAQKTLDDHRNDKRTHIYTLEQFCKAETHD 366
>gi|328953264|ref|YP_004370598.1| deoxyribodipyrimidine photolyase [Desulfobacca acetoxidans DSM
11109]
gi|328453588|gb|AEB09417.1| deoxyribodipyrimidine photolyase [Desulfobacca acetoxidans DSM
11109]
Length = 463
Score = 278 bits (712), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 156/352 (44%), Positives = 216/352 (61%), Gaps = 14/352 (3%)
Query: 15 RIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGA 74
R RVL QGS GPVV W+ RDQR DNWAL++A A +AV FNL FL A
Sbjct: 8 RARVLNQGSYGG--GPVVCWLSRDQRADDNWALLYAQHLALSRQAALAVVFNLVPHFLQA 65
Query: 75 KARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREI 134
RQ FML+GL L +N+ + I FFL QGE IP F+ + A +V+DF PLR
Sbjct: 66 TYRQYDFMLKGLEELTQNLGQK-NIPFFLLQGEPAATIPMFLAQSRAGAVVSDFDPLRIK 124
Query: 135 RRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPML 194
R+ KD++ R+S + +EVDAHN++P W+AS K E+ A TLR +I++LL ++L + +
Sbjct: 125 RQWKDQVLPRLS--IPFYEVDAHNIIPCWLASAKQEFGAYTLRPRIHRLLSDFLTEPRSI 182
Query: 195 EQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLK 254
E +W + IDW S++A+ + VP + WC+ GE A L F+ L
Sbjct: 183 EIHPFRWPDSVPQIDWRSVLASAAMDRS-VPPVSWCQPGESAGRARLTS----FIQLGLP 237
Query: 255 NYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCP-EAIDTFLEELIVRRE 313
Y RN+P++ S LSPYLHFGQI+AQR A E ++A + P EA FLEELIVRRE
Sbjct: 238 RYHLSRNDPIR-EGQSDLSPYLHFGQIAAQRVAWEVQRA--VAPTEARQAFLEELIVRRE 294
Query: 314 LADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPV 365
LADNFC++ P+YD G WA+++L H +D+R+++Y+ +FE A+T DP+
Sbjct: 295 LADNFCWHNPDYDRFSGFPAWAQETLNKHRTDRRDYLYSLREFESARTHDPL 346
>gi|387017650|gb|AFJ50943.1| Deoxyribodipyrimidine photo-lyase-like [Crotalus adamanteus]
Length = 526
Score = 278 bits (712), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 150/351 (42%), Positives = 218/351 (62%), Gaps = 10/351 (2%)
Query: 15 RIRVLKQGSLDKKRGP--VVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFL 72
R+R++ D K G ++YWM R+QRV+DNWA ++A A K +P+ V F L +FL
Sbjct: 73 RVRLISPAP-DLKEGAQGILYWMSREQRVQDNWAFLYAQRLALKQRLPLHVCFCLVPKFL 131
Query: 73 GAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLR 132
A R GF+L+GL + I F L G A+D +P+FV + G +VTDFSPLR
Sbjct: 132 DATIRHFGFLLKGLEEVAEECR-MLDIPFHLLTGFAKDRVPHFVTQHGIGGVVTDFSPLR 190
Query: 133 EIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYP 192
+ + ++ V + +VDAHN+VP WVAS+K EY A+T+R KI L E+L ++P
Sbjct: 191 VPLQWVRDVQEQLPSDVPLAQVDAHNIVPCWVASDKQEYGARTIRRKIQDRLAEFLTEFP 250
Query: 193 MLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKR 252
L + + + I+W++ A+ L+ V E+ W G + ++VL +GF+ R
Sbjct: 251 PLVKHPFRAGLQAEPINWEACYAS-LQVDRSVKEVEWARPGSASGLKVL----EGFIKDR 305
Query: 253 LKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVRR 312
LK + +DRNNP + ALS LSP+ HFGQ++ QR LE RK R E+++ F+EE +VRR
Sbjct: 306 LKFFASDRNNPNR-MALSNLSPWFHFGQVAVQRAILEVRKHRARYKESVEGFIEEAVVRR 364
Query: 313 ELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTAD 363
ELADNFCFY PNYD ++GA++WA+ +LK HA DKR ++YT EQ E+ +T D
Sbjct: 365 ELADNFCFYNPNYDKIEGAYDWAKTTLKLHAKDKRPYLYTLEQLEEGKTHD 415
>gi|110596745|ref|ZP_01385035.1| deoxyribodipyrimidine photolyase [Chlorobium ferrooxidans DSM
13031]
gi|110341432|gb|EAT59892.1| deoxyribodipyrimidine photolyase [Chlorobium ferrooxidans DSM
13031]
Length = 450
Score = 276 bits (706), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 160/353 (45%), Positives = 212/353 (60%), Gaps = 14/353 (3%)
Query: 11 VQPGRIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQ 70
+ P RI +L + GPV+YWM RDQRVR NWAL+ A +A + P+ V F L
Sbjct: 2 IDPRRITLL--NNCRDASGPVIYWMSRDQRVRHNWALLFARKKAEQLQQPLKVVFTLAPS 59
Query: 71 FLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSP 130
FL A R FML+GL ++R + I F+L QGE E +P F RE A +VTDFSP
Sbjct: 60 FLNAPLRHYDFMLKGLHEVERALRR-LNIPFYLVQGEPEIELPRFAREMKAGAVVTDFSP 118
Query: 131 LREIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLID 190
L+ R K ++ + + ++EVDAHN+VP +AS K EY+A+T R KI LL E L
Sbjct: 119 LKISREWKRRVGAHLP--LPLYEVDAHNIVPCRIASAKQEYAARTFRPKIKSLLGELLTG 176
Query: 191 YPMLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLT 250
+P LE P+E T +DW SI + L+ V + W + GE+AA L D FL
Sbjct: 177 FPQLE-PLEA-TTESHPVDWSSI-SCSLKADHRVAPVEWLKPGEEAAANCL----DTFLE 229
Query: 251 KRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIV 310
KRL +Y RN+P LS LSPYLHFGQISAQ AL ++R + E+ FLEELIV
Sbjct: 230 KRLSSYAELRNDP-NSGVLSNLSPYLHFGQISAQYIALRVSESR-MPDESRSAFLEELIV 287
Query: 311 RRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTAD 363
RREL+DN+CFY YDS G+ WA++SL +H +D RE++YT ++F A+T D
Sbjct: 288 RRELSDNYCFYNDRYDSFDGSPTWAKESLMNHRNDHREYLYTADEFATAKTHD 340
>gi|189499730|ref|YP_001959200.1| deoxyribodipyrimidine photolyase [Chlorobium phaeobacteroides BS1]
gi|189495171|gb|ACE03719.1| deoxyribodipyrimidine photolyase [Chlorobium phaeobacteroides BS1]
Length = 451
Score = 276 bits (706), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 154/355 (43%), Positives = 208/355 (58%), Gaps = 12/355 (3%)
Query: 11 VQPGRIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQ 70
+ P RIR+L + GPVVYWM RDQR +NWAL+ A + +NN P+ VAFNL
Sbjct: 2 IHPERIRILNHE--NPIEGPVVYWMSRDQRAENNWALLFAEQLSMQNNQPLIVAFNLVPS 59
Query: 71 FLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSP 130
+ A R FML+GL +++ +E I F + G E IP F C A +VTDFSP
Sbjct: 60 YPEATLRHYDFMLKGLMQVEQQLE-ALNIPFLVLSGNPEREIPRFTASCRAGAVVTDFSP 118
Query: 131 LREIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLID 190
L+ K+K+ + + +EVDAHN+VP AS KLE+SA+T+R KIN+LL +L
Sbjct: 119 LKISETWKNKVLEHIP--IPFYEVDAHNIVPCRTASNKLEFSARTIRPKINRLLETFLTG 176
Query: 191 YPMLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLT 250
+P L+ + ++W+ + LR V + W + G DAA + LK F+
Sbjct: 177 FPELKGQSPERKSAVPPVEWNKLYE-TLRINRAVAPVTWIDPGGDAATKTLKK----FID 231
Query: 251 KRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIV 310
RL +YP RN+P A+S LSPYLHFGQISAQ A E +A A D FLEEL++
Sbjct: 232 HRLASYPKLRNDP-NAHAVSDLSPYLHFGQISAQHVAREI-QASDAPRSAKDVFLEELVI 289
Query: 311 RRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPV 365
RRELADN+C Y +YDSLKG WA ++L+ H +D RE +YT + EKA T DP+
Sbjct: 290 RRELADNYCLYNKHYDSLKGIHPWAAETLERHRTDTREFLYTADDLEKASTHDPL 344
>gi|308802307|ref|XP_003078467.1| class II DNA photolyase (ISS) [Ostreococcus tauri]
gi|116056919|emb|CAL53208.1| class II DNA photolyase (ISS), partial [Ostreococcus tauri]
Length = 297
Score = 276 bits (705), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 146/296 (49%), Positives = 186/296 (62%), Gaps = 8/296 (2%)
Query: 32 VYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQR 91
+YWM RDQRV DNWAL+ A D A + PV +AFNL ++LGA ARQ GFMLRGLR L+
Sbjct: 1 MYWMSRDQRVDDNWALLRACDLARERGAPVVIAFNLLTKYLGAGARQFGFMLRGLRELEA 60
Query: 92 NIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLRE-IRRCKDKICNRVSDSVT 150
+ E I ++ GA +V DFSPLR+ +R KD
Sbjct: 61 KARAAKATFAMTYGDEPAAAIDALAKKIGAKTIVCDFSPLRDGVRWRKDLAVLSEKRGAH 120
Query: 151 IHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQPIEKWTGTR-QSID 209
+ E DAHNVVP W AS+KLE A+TLRG++ K PE+L ++P + + ++ G ++
Sbjct: 121 VEECDAHNVVPCWEASDKLEVGARTLRGRLAKRYPEFLKEFPAIPDDLVEYDGPAIDAVK 180
Query: 210 WDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRAL 269
WD ++A L++G VPE+ W GE AA VL D F+ R+K Y RN+P KPRAL
Sbjct: 181 WDDLLAEALKRGEAVPEVTWAIPGETAARAVL----DDFVANRMKLY-EKRNDPSKPRAL 235
Query: 270 SGLSPYLHFGQISAQRCALEARKA-RKLCPEAIDTFLEELIVRRELADNFCFYQPN 324
SGLSP+LHFGQISAQRCALEA+KA K P A D+F EEL+VRRELADNFC+Y P
Sbjct: 236 SGLSPWLHFGQISAQRCALEAKKAVGKASPAAYDSFFEELVVRRELADNFCYYCPG 291
>gi|157123882|ref|XP_001653955.1| DNA photolyase [Aedes aegypti]
gi|108882857|gb|EAT47082.1| AAEL001787-PA [Aedes aegypti]
Length = 506
Score = 275 bits (704), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 146/350 (41%), Positives = 210/350 (60%), Gaps = 8/350 (2%)
Query: 15 RIRVLKQGS-LDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLG 73
R+R+L +++ + V+YWM RD RV+DNWA + A A KN +P+ V F+L +FL
Sbjct: 53 RVRILSDAKEVEENKKGVIYWMSRDARVQDNWAFLFAQKLALKNELPLHVCFSLVPKFLD 112
Query: 74 AKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLRE 133
A R FML+GL + + E + I F + G A+D IP FV+ +V DFSPLR
Sbjct: 113 ATIRHYKFMLKGLEEVAKECE-SLNINFHMLTGMAKDTIPKFVKTHNIGAVVCDFSPLRV 171
Query: 134 IRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPM 193
+ + + + V + +VDAHN+VP+WV SEK EY+A+T+R K+N L YL +P
Sbjct: 172 PMKWVEDVRKSLPAEVPLCQVDAHNIVPLWVTSEKQEYAARTIRNKVNNNLNTYLTQFPP 231
Query: 194 LEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRL 253
+ + K + SIDW ++ + V E+ W G + VL+ F+ KRL
Sbjct: 232 VIKHPHKASFKADSIDWVKLLDTI-EVDRTVDEVDWAVPGYTGGIGVLQS----FVEKRL 286
Query: 254 KNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVRRE 313
+ + RN+P ALS LSP+ HFGQIS QRC L +K K E + F EE IVRRE
Sbjct: 287 RKFNAKRNDPTDD-ALSNLSPWFHFGQISVQRCVLAVKKYGKGYSEGVAAFCEESIVRRE 345
Query: 314 LADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTAD 363
L+DNFC+Y NYD+LKGA++WA+K+L DH DKR ++Y+++Q E+A+T D
Sbjct: 346 LSDNFCYYNKNYDNLKGAYDWAQKTLDDHRKDKRTYVYSRDQLEQARTHD 395
>gi|41055064|ref|NP_957358.1| uncharacterized protein LOC394039 [Danio rerio]
gi|32451837|gb|AAH54710.1| Zgc:66475 [Danio rerio]
Length = 516
Score = 274 bits (701), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 139/335 (41%), Positives = 214/335 (63%), Gaps = 8/335 (2%)
Query: 31 VVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQ 90
V+YWM RDQR++DNWALI++ A +P+ + F L +FL A RQ FML+GL+ +
Sbjct: 73 VLYWMSRDQRIQDNWALIYSQQLALAEKLPLHICFCLVPKFLDATYRQYAFMLKGLQEVV 132
Query: 91 RNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICNRVSDSVT 150
+ + + I F L GE N+P FV+ +VTDF+PLR + D + + +
Sbjct: 133 KECK-SLDIEFHLLSGEPVHNLPAFVKSWNIGAVVTDFNPLRISLQWIDTVKKHLPSDIP 191
Query: 151 IHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQPIEKWTGTRQSIDW 210
+VDAHNVVP W AS KLEY A+T+RGKI K L E+L D P+++ + + IDW
Sbjct: 192 FIQVDAHNVVPCWEASTKLEYGARTIRGKITKHLQEFLTDMPLVDTHPYCASRAAKIIDW 251
Query: 211 DSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALS 270
+ ++++ L V E+ W + G M +L + F+ +RL + T RNNP A+S
Sbjct: 252 EEVLSS-LEVDHNVCEVEWAQPGTTGGMFML----ESFIDQRLHIFATHRNNP-NSDAVS 305
Query: 271 GLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVRRELADNFCFYQPNYDSLKG 330
LSP++H GQ+SAQR ++ ++ +K E++ +F+EE++VRRELADNFCFY NYD++ G
Sbjct: 306 HLSPWIHAGQLSAQRVVMQVKR-KKNASESVASFIEEIVVRRELADNFCFYNQNYDNISG 364
Query: 331 AWEWARKSLKDHASDKREHIYTKEQFEKAQTADPV 365
A++WA+K+L++HA D+R+++YTK++ E A+T D +
Sbjct: 365 AYDWAKKTLQEHAKDRRQYLYTKKELESAETHDQL 399
>gi|386001823|ref|YP_005920122.1| Deoxyribodipyrimidine photo-lyase (DNA
photolyase)(Photoreactivating enzyme) [Methanosaeta
harundinacea 6Ac]
gi|357209879|gb|AET64499.1| Deoxyribodipyrimidine photo-lyase (DNA
photolyase)(Photoreactivating enzyme) [Methanosaeta
harundinacea 6Ac]
Length = 448
Score = 274 bits (700), Expect = 6e-71, Method: Compositional matrix adjust.
Identities = 161/353 (45%), Positives = 216/353 (61%), Gaps = 13/353 (3%)
Query: 13 PGRIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFL 72
P R R+ K+G + +GPV+YWM RDQR +NWAL A + A + P+AV F L ++FL
Sbjct: 3 PERARIWKEGR--EGKGPVIYWMTRDQRAEENWALAFAQELALERRAPLAVVFALKEEFL 60
Query: 73 GAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLR 132
GA RQ GFMLRGL ++R + + +I F L QG+ + +P+FVRE AS LVTDFSPL
Sbjct: 61 GAAMRQYGFMLRGLEEVERTLRDK-EIPFVLLQGDPGETVPDFVREHSASALVTDFSPLA 119
Query: 133 EIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYP 192
R +K + + + EVDAHNVVP WVAS K EY+A+T R K+ +LLP + D P
Sbjct: 120 TKRAWMEKAEEGLD--LPLREVDAHNVVPCWVASPKQEYAARTFRPKVRRLLPIFCEDPP 177
Query: 193 MLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKR 252
++ W + WD + + + VPE+ W + G AA L+ FL ++
Sbjct: 178 AVQVHPHPWD-LDAGVSWDRLRRDLRVDRS-VPEVEWIKPGAAAARRALRR----FLGEK 231
Query: 253 LKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVRR 312
L Y DRN+P S LSPYLHFGQISAQR ALEA K + P + FLEEL+VRR
Sbjct: 232 LSRYDGDRNDPTLD-GQSNLSPYLHFGQISAQRVALEAAKW-EADPRSKAAFLEELVVRR 289
Query: 313 ELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPV 365
EL+DNFCFY YD+ WARK+L +H +D RE++Y +E+ E A+T DP+
Sbjct: 290 ELSDNFCFYNRGYDTFDAFPAWARKTLDEHRNDPREYLYDQEELEGAKTHDPL 342
>gi|8134633|sp|Q28811.1|PHR_POTTR RecName: Full=Deoxyribodipyrimidine photo-lyase; AltName: Full=DNA
photolyase; AltName: Full=Photoreactivating enzyme
gi|1401039|dbj|BAA05041.1| photolyase [Potorous tridactylus]
Length = 532
Score = 273 bits (698), Expect = 9e-71, Method: Compositional matrix adjust.
Identities = 152/355 (42%), Positives = 215/355 (60%), Gaps = 14/355 (3%)
Query: 15 RIRVLKQG-SLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLG 73
R+R++ Q L + VYWM RDQRV+DNWA ++A A K +P+ V F L FLG
Sbjct: 82 RVRLISQDCHLQDQSQAFVYWMSRDQRVQDNWAFLYAQRLALKQKLPLHVCFCLAPCFLG 141
Query: 74 AKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLRE 133
A R FMLRGL + E+ I F L G +D +P FV+ G +VTDFSPL
Sbjct: 142 ATIRHYDFMLRGLEEVAEECEK-LCIPFHLLLGLPKDVLPAFVQTHGIGGIVTDFSPLLH 200
Query: 134 IRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYP- 192
+ + + + V +VDAHN+VP WVAS+K EY A+T+R KI+ LP +L ++P
Sbjct: 201 HTQWVKDVQDALPRQVPFVQVDAHNIVPCWVASDKQEYGARTIRHKIHDRLPHFLTEFPP 260
Query: 193 MLEQPIEKWTGTRQS--IDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLT 250
++ P +T Q+ +DW+ A L+ V E+ W + G + + +L+ F+
Sbjct: 261 VICHP---YTSNVQAEPVDWNGCRAG-LQVDRSVKEVSWAKPGTASGLTMLQS----FIA 312
Query: 251 KRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIV 310
+RL + +DRNNP K ALS LSP+ HFGQ+S QR LE +K R P+++ F+EE +V
Sbjct: 313 ERLPYFGSDRNNPNKD-ALSNLSPWFHFGQVSVQRAILEVQKHRSRYPDSVTNFVEEAVV 371
Query: 311 RRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPV 365
RRELADNFCFY NYD L+GA++WA+ +L+ HA DKR H+Y+ EQ E +T DP+
Sbjct: 372 RRELADNFCFYNKNYDKLEGAYDWAQTTLRLHAKDKRPHLYSLEQLESGKTHDPL 426
>gi|194757449|ref|XP_001960977.1| GF13637 [Drosophila ananassae]
gi|190622275|gb|EDV37799.1| GF13637 [Drosophila ananassae]
Length = 538
Score = 273 bits (698), Expect = 9e-71, Method: Compositional matrix adjust.
Identities = 160/354 (45%), Positives = 217/354 (61%), Gaps = 14/354 (3%)
Query: 15 RIRVL-KQGSL-DKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFL 72
R+RVL K G + D G V+YWM RD RV+DNWAL+ A A K +P+AV F L +FL
Sbjct: 80 RVRVLSKNGDVGDSCEGGVIYWMSRDGRVQDNWALLFAQRLALKLELPLAVVFCLVPKFL 139
Query: 73 GAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLR 132
A R FM+ GL+ +++ E I F L G A D IP FV+ ++ DF+PLR
Sbjct: 140 NATIRHYKFMMGGLQEVEQQCRE-LDIPFHLLLGPAVDRIPEFVKSRKVGAVICDFAPLR 198
Query: 133 EIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYP 192
R+ D + + +V + +VDAHNVVPVWVAS+K EY+A+T+R KIN L EYL ++P
Sbjct: 199 VPRKWVDDVVKALPKTVPLVQVDAHNVVPVWVASDKQEYAARTIRNKINSKLSEYLTEFP 258
Query: 193 -MLEQPIEKWTGTRQ--SIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFL 249
+++ P TG R+ +DW + +L V E+ W + G AA + L F
Sbjct: 259 PVVKHP--HGTGCRKVDPVDWTAAYE-MLECDKSVDEVDWAKPGYKAACKQLYE----FC 311
Query: 250 TKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELI 309
++RL+ + RN+PL A+SGLSP+LHFGQISAQRCALE ++ R + + F EE I
Sbjct: 312 SRRLRQFNDKRNDPLAD-AISGLSPWLHFGQISAQRCALEVQRFRGQHKASAEAFCEEAI 370
Query: 310 VRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTAD 363
VRRELADNFC+Y +YDSLKG WA ++L H DKR+ Y+ E+ EKA T D
Sbjct: 371 VRRELADNFCYYNEHYDSLKGLSSWAYQTLDAHRKDKRDPCYSLEEMEKALTYD 424
>gi|224060613|ref|XP_002190613.1| PREDICTED: deoxyribodipyrimidine photo-lyase-like [Taeniopygia
guttata]
Length = 697
Score = 273 bits (698), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 147/329 (44%), Positives = 207/329 (62%), Gaps = 7/329 (2%)
Query: 37 RDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQRNIEET 96
R V DNWA ++A A K +P+ V F L +FLGA R FMLRGL+ + E
Sbjct: 268 RGCVVADNWAFLYAQRLALKQELPLHVCFCLVPKFLGATIRHYRFMLRGLQEVAEECAE- 326
Query: 97 FQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICNRVSDSVTIHEVDA 156
I F L G A+D +P FV E G LVTDFSPLR R+ + + R+ + V +VDA
Sbjct: 327 LNIPFHLLLGYAKDVLPTFVVEHGVGGLVTDFSPLRLPRQWVEDVKERLPEDVPFAQVDA 386
Query: 157 HNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQPIEKWTGTRQSIDWDSIIAA 216
HN+VP WVAS K EYSA+T+RGKI+ LPE+L ++P + + + I W++ ++
Sbjct: 387 HNIVPCWVASPKQEYSARTIRGKIHAQLPEFLTEFPPVVPHPHLPSCPAEPIAWEACYSS 446
Query: 217 VLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYL 276
L+ V E+ W G A M VLK F+ +RLK++ T RN+P K ALS LSP+L
Sbjct: 447 -LQVDHTVKEVEWATPGTAAGMAVLKS----FIAERLKSFSTHRNDPNK-AALSNLSPWL 500
Query: 277 HFGQISAQRCALEARKARKLCPEAIDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWAR 336
HFGQ+S QR LE +K R+ +++D F+EE +VRRELA+NFC+Y NYDS++GA++WA+
Sbjct: 501 HFGQVSTQRAILEVQKQRRNYKDSVDAFVEEAVVRRELAENFCYYNENYDSVQGAYDWAQ 560
Query: 337 KSLKDHASDKREHIYTKEQFEKAQTADPV 365
+LK HA DKR ++Y+ ++ E+ T DP+
Sbjct: 561 TTLKLHAKDKRPYLYSLQELEQGTTHDPL 589
>gi|312373837|gb|EFR21518.1| hypothetical protein AND_16935 [Anopheles darlingi]
Length = 529
Score = 272 bits (695), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 149/350 (42%), Positives = 209/350 (59%), Gaps = 8/350 (2%)
Query: 15 RIRVLKQGS-LDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLG 73
R+RVL +++ + V+YWM RD RV+DNWA + A A KN +P+ V FNL +FL
Sbjct: 75 RVRVLSDAKVIEEGKEGVLYWMSRDVRVQDNWAFLFAQKLALKNELPLHVCFNLVPRFLD 134
Query: 74 AKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLRE 133
A R FML GL + + E+ I F L +G A N+P FV++ +V DFSPLR
Sbjct: 135 ATIRHFKFMLNGLEEVAKECEK-LNIHFHLLRGNAGQNVPAFVKKHRIGGVVCDFSPLRV 193
Query: 134 IRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPM 193
+ + + + V + +VDAHN+VPVWV SEKLEY+A+T+R K+N L +L +P
Sbjct: 194 PMQWVEDVRKALPMEVPLCQVDAHNIVPVWVTSEKLEYAARTIRNKVNNNLGTFLTPFPP 253
Query: 194 LEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRL 253
+ + K + + IDW +I + L V E+ W G + L+ F+ KRL
Sbjct: 254 VIKHPHKASFQAEPIDWPQVIDS-LEVDRTVDEVKWATPGYTGGVATLQS----FVEKRL 308
Query: 254 KNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVRRE 313
+ RN+P + ALS LSP+ HFGQI+ QR L + K E++ +F EE IVRRE
Sbjct: 309 GKFNAKRNDPTE-NALSNLSPWFHFGQIAVQRAVLAVKSHGKRHTESVASFCEEAIVRRE 367
Query: 314 LADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTAD 363
LADNFCFY NYD+LKGA++WARK+L DH D+R + YT+E+ E A+T D
Sbjct: 368 LADNFCFYNKNYDNLKGAYDWARKTLDDHRKDRRVYCYTREELETAKTHD 417
>gi|291286943|ref|YP_003503759.1| deoxyribodipyrimidine photolyase [Denitrovibrio acetiphilus DSM
12809]
gi|290884103|gb|ADD67803.1| deoxyribodipyrimidine photolyase [Denitrovibrio acetiphilus DSM
12809]
Length = 446
Score = 271 bits (694), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 149/337 (44%), Positives = 209/337 (62%), Gaps = 15/337 (4%)
Query: 29 GPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRL 88
GPV+YWM RDQRVRDNWALI A++ A P+AV F L + A+ + FM+ GL
Sbjct: 19 GPVIYWMNRDQRVRDNWALIKAMELAESRQSPMAVVFCLIPDYPSARNQHFRFMMEGLCE 78
Query: 89 LQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICNRVSDS 148
+ +E +I FF+ G D + F+R+ GA +VTDFSPL+ R+ K ++ ++
Sbjct: 79 IDLELE-YLKIPFFMISGNPVDELSKFIRQVGAGAVVTDFSPLKFNRKMKLELAEVIN-- 135
Query: 149 VTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQPIEKWTGTRQSI 208
V + EVDAHN+VP +AS K E++A+T+R KIN LL ++L+++P L+Q KW G I
Sbjct: 136 VPLIEVDAHNIVPCRIASHKEEFAARTIRPKINGLLSQFLVEFPKLKQQRYKWKGHTAHI 195
Query: 209 DWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRA 268
DW+ +I + P +G AA E L F+T L Y RN+P
Sbjct: 196 DWERVINSFGIPNNFYP------AGIRAADEALHN----FVTGSLNGYNIKRNDPTIDHQ 245
Query: 269 LSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVRRELADNFCFYQPNYDSL 328
S LSPYLHFG ISAQRCAL+A +A E I F EEL+VRRELA+N+CFY +YDS+
Sbjct: 246 -SNLSPYLHFGNISAQRCALDAGEAF-WADEDIRAFKEELVVRRELAENYCFYNDHYDSV 303
Query: 329 KGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPV 365
+GA WA+K++++H D RE+IY ++FE+A+T DP+
Sbjct: 304 EGAHSWAKKTIEEHRDDSREYIYGYDEFEQAKTHDPL 340
>gi|74136505|ref|NP_001028149.1| DNA photolyase [Monodelphis domestica]
gi|682750|dbj|BAA06700.1| photolyase [Monodelphis domestica]
Length = 470
Score = 271 bits (694), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 148/353 (41%), Positives = 212/353 (60%), Gaps = 10/353 (2%)
Query: 15 RIRVLKQG-SLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLG 73
R+R++ Q L VYWM RDQRV+DNWA ++A A K +P+ V F L FLG
Sbjct: 20 RVRLISQDCHLQDHSQAFVYWMSRDQRVQDNWAFLYAQRLALKQKLPLHVCFCLAPCFLG 79
Query: 74 AKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLRE 133
A R FMLRGL + E+ I F L G +D +P FV+ +VTDFSPL
Sbjct: 80 ATIRHYDFMLRGLEEVAEECEK-LHIPFHLLLGLPKDVLPAFVQAHSIGGIVTDFSPLLH 138
Query: 134 IRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYP- 192
+ + + + V +VDAHN+VP W+AS+K EY A+T+R KI+ LP +L ++P
Sbjct: 139 HTQWVKDVQDGLPKQVPFVQVDAHNIVPCWIASDKQEYGARTIRHKIHDRLPHFLTEFPP 198
Query: 193 MLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKR 252
++ P + +DW++ A L+ V E+ W + G + + +L+ F+++R
Sbjct: 199 VICHPYPS-NIQAEPVDWNACRAG-LQVDRSVKEVSWAKPGTASGLTMLQS----FISQR 252
Query: 253 LKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVRR 312
L + +DRNNP K ALS LSP+ HFGQ+S QR LE +K R P+++ F+EE +VRR
Sbjct: 253 LPYFGSDRNNPNKD-ALSNLSPWFHFGQVSVQRAILEVQKHRSRYPDSVANFVEEAVVRR 311
Query: 313 ELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPV 365
ELADNFCFY NYD L+GA++WA+ +L+ HA DKR H+Y+ EQ E +T DP+
Sbjct: 312 ELADNFCFYNKNYDKLEGAYDWAQTTLRLHAKDKRPHLYSLEQLESGKTHDPL 364
>gi|198458346|ref|XP_001361001.2| GA10839 [Drosophila pseudoobscura pseudoobscura]
gi|198136308|gb|EAL25577.3| GA10839 [Drosophila pseudoobscura pseudoobscura]
Length = 540
Score = 271 bits (694), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 158/352 (44%), Positives = 213/352 (60%), Gaps = 10/352 (2%)
Query: 15 RIRVLKQGS--LDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFL 72
R+RVL + + DK G VVYWM RD RV+DNWAL+ A A K +P+AV F L +FL
Sbjct: 83 RVRVLSKVNDVQDKCSGGVVYWMSRDGRVQDNWALLFAQRLALKLEMPLAVVFCLVPKFL 142
Query: 73 GAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLR 132
A R FM+ GL+ ++ E I F L G A D +P FVR +V DF+PLR
Sbjct: 143 NATIRHYKFMMGGLQEVEEQCRE-LGIPFHLLLGPAVDRLPEFVRSKDVGAVVCDFAPLR 201
Query: 133 EIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYP 192
R+ + + + +V + +VDAHNVVP+WVAS+K EY+A+T+R KIN L E+L D+P
Sbjct: 202 VPRKWVEDVAKALPKNVPLTQVDAHNVVPLWVASDKQEYAARTIRNKINSKLGEFLSDFP 261
Query: 193 -MLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTK 251
+++ P + + IDW + A +L +V E+ W + G AA L F ++
Sbjct: 262 PVIKHPYGEGCKKVKPIDWPAAYA-MLECDMDVDEVKWAKPGYKAACLQLYE----FCSR 316
Query: 252 RLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVR 311
RL + RN+P ALSGLSP+LHFGQISAQRC LE ++ R + D + EE IVR
Sbjct: 317 RLGKFNDKRNDPTVD-ALSGLSPWLHFGQISAQRCVLEVQRYRSQHKASADAYCEEAIVR 375
Query: 312 RELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTAD 363
RELADNFC+Y NYDSLKG WA +SL+ H DKR+ YT E+ E++ T D
Sbjct: 376 RELADNFCYYNENYDSLKGLSPWAYQSLEAHRKDKRDPCYTLEELEQSLTYD 427
>gi|195154062|ref|XP_002017941.1| GL17032 [Drosophila persimilis]
gi|194113737|gb|EDW35780.1| GL17032 [Drosophila persimilis]
Length = 540
Score = 270 bits (690), Expect = 8e-70, Method: Compositional matrix adjust.
Identities = 157/352 (44%), Positives = 213/352 (60%), Gaps = 10/352 (2%)
Query: 15 RIRVLKQGS--LDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFL 72
R+RVL + + DK G VVYWM RD RV+DNWAL+ A A K +P+AV F L +FL
Sbjct: 83 RVRVLSKVNDVQDKCSGGVVYWMSRDGRVQDNWALLFAQRLALKLEMPLAVVFCLVPKFL 142
Query: 73 GAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLR 132
A R FM+ GL+ ++ + I F L G A D +P FVR +V DF+PLR
Sbjct: 143 NATIRHYKFMMGGLQEVEEQCRD-LGIPFHLLLGPAVDRLPEFVRSKDVGAVVCDFAPLR 201
Query: 133 EIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYP 192
R+ + + + +V + +VDAHNVVP+WVAS+K EY+A+T+R KIN L E+L D+P
Sbjct: 202 VPRKWVEDVAKALPKNVPLTQVDAHNVVPLWVASDKQEYAARTIRNKINSKLGEFLSDFP 261
Query: 193 -MLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTK 251
+++ P + + IDW + A +L +V E+ W + G AA L F ++
Sbjct: 262 PVIKHPYGEGCKKVKPIDWPAAYA-MLECDMDVDEVKWAKPGYKAACLQLYE----FCSR 316
Query: 252 RLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVR 311
RL + RN+P ALSGLSP+LHFGQISAQRC LE ++ R + D + EE IVR
Sbjct: 317 RLGKFNDKRNDPTVD-ALSGLSPWLHFGQISAQRCVLEVQRYRSQHKASADAYCEEAIVR 375
Query: 312 RELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTAD 363
RELADNFC+Y NYDSLKG WA +SL+ H DKR+ YT E+ E++ T D
Sbjct: 376 RELADNFCYYNENYDSLKGLSPWAYQSLEAHRKDKRDPCYTLEELEQSLTYD 427
>gi|383787199|ref|YP_005471768.1| Deoxyribodipyrimidine photo-lyase type II [Fervidobacterium
pennivorans DSM 9078]
gi|383110046|gb|AFG35649.1| Deoxyribodipyrimidine photo-lyase type II [Fervidobacterium
pennivorans DSM 9078]
Length = 465
Score = 270 bits (690), Expect = 8e-70, Method: Compositional matrix adjust.
Identities = 159/354 (44%), Positives = 213/354 (60%), Gaps = 14/354 (3%)
Query: 15 RIRVLKQ--GSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFL 72
RIRVLKQ + +GPVVYWM RDQR DNWAL++A A KNNV + V FN+ FL
Sbjct: 11 RIRVLKQVESHFSQIKGPVVYWMQRDQRAFDNWALLYAQQLALKNNVGLLVVFNIVPSFL 70
Query: 73 GAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLR 132
A R FML+GL + +EE L F F GE I ++E A LVTDF+PL+
Sbjct: 71 NAPFRHYDFMLQGLFQTKVFLEELNVPLVFTF-GEPVREISKLIKEVNACALVTDFNPLK 129
Query: 133 EIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYP 192
++ K+ + ++ + ++EVDAHN+VP + S+K EY A TLR KI K L E+L +P
Sbjct: 130 IVKNWKENLIRVLN--IPVYEVDAHNIVPAFFVSQKQEYGAYTLRPKIKKYLKEFLTSFP 187
Query: 193 MLEQ-PIEKWTGTRQSI--DWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFL 249
++ P+ + S+ +++ I+ + GA P + W + G M + + F
Sbjct: 188 APKKMPVSNLEFEKLSVFNNFEEILKRLDVDGAVAP-VNWLKPGFTEGMRLF----EEFS 242
Query: 250 TKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELI 309
K+LK Y RN+P K S LS YLHFGQI+ QR ALE + + PE++ FLEELI
Sbjct: 243 RKKLKLYKDLRNDPTKD-VTSNLSAYLHFGQIAPQRVALEIIQYERYYPESVADFLEELI 301
Query: 310 VRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTAD 363
VRRELADNFC Y NYDS G EWA+KSL H +DKRE+IY+ E+FEKA+T D
Sbjct: 302 VRRELADNFCLYNENYDSFDGFPEWAKKSLNAHRNDKREYIYSLEEFEKAKTHD 355
>gi|193652710|ref|XP_001949151.1| PREDICTED: deoxyribodipyrimidine photo-lyase-like [Acyrthosiphon
pisum]
Length = 506
Score = 270 bits (690), Expect = 9e-70, Method: Compositional matrix adjust.
Identities = 150/353 (42%), Positives = 211/353 (59%), Gaps = 14/353 (3%)
Query: 15 RIRVL-KQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLG 73
R+RVL +Q + + V+YW FRD+R+ DNWAL++A A KN V + + F QFL
Sbjct: 50 RVRVLSEQKEVPEWAEGVIYWTFRDERIHDNWALLYAQKLAIKNKVSLHITFCRLKQFLD 109
Query: 74 AKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLRE 133
R + +GL L+ + + I F G A D +P+FV++ ++ DF P+RE
Sbjct: 110 CSLRHYKHIFQGLEELETECK-SLDIQFHFLIGCAADILPDFVKKHKLGAIIVDFMPVRE 168
Query: 134 IRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYP- 192
++ +R+ V + +VDAHN+VP WVAS+K EYSA+T+R KIN LPE+L ++P
Sbjct: 169 HISWTKQLADRIGSEVPVIQVDAHNIVPCWVASDKQEYSARTIRNKINNKLPEFLTEFPP 228
Query: 193 MLEQPIEKWTGTRQSIDWDSI--IAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLT 250
+++ P T + +WD V R VP + ++G A M L + FL
Sbjct: 229 VIKHPFRS-TFKAKPTNWDEADKTLEVDRSVVSVPGL---KAGFKAGMSEL----EQFLK 280
Query: 251 KRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIV 310
KRL Y TDRNNP+K LS LSP+LHFGQISAQRC LE K K P+++ + EE IV
Sbjct: 281 KRLPKYSTDRNNPVKD-GLSKLSPWLHFGQISAQRCILEVSKLSKQYPDSVAAYREEAIV 339
Query: 311 RRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTAD 363
RREL+DNFCFY P YD ++GA WA+ SL +H DKR +YT+E+ E ++T D
Sbjct: 340 RRELSDNFCFYNPKYDKIEGAPNWAQTSLNEHRKDKRMFVYTREELESSRTHD 392
>gi|195119354|ref|XP_002004196.1| GI19782 [Drosophila mojavensis]
gi|193909264|gb|EDW08131.1| GI19782 [Drosophila mojavensis]
Length = 538
Score = 269 bits (688), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 151/357 (42%), Positives = 216/357 (60%), Gaps = 11/357 (3%)
Query: 10 AVQPGRIRVLKQGSLDKKR--GPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNL 67
A + R+RVL S K+ G VVYWM RD RV+DNWAL+ A A K +P+ V F L
Sbjct: 76 AFRKKRVRVLSSASDVKENCNGGVVYWMSRDARVQDNWALLFAQRLALKLELPLTVVFCL 135
Query: 68 FDQFLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTD 127
+FL A R FML GL+ +++ E + F L G A + +P FV++ ++ D
Sbjct: 136 VPKFLNATLRHYKFMLGGLQEVEQQCRE-LNVSFHLLLGPAVERLPQFVKDEKIGAVICD 194
Query: 128 FSPLREIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEY 187
F+PLR R+ + + + V + +VDAHNVVP+WV S+K EY+A+T+R KIN L EY
Sbjct: 195 FAPLRLPRQWVEDVVKALPAHVPLTQVDAHNVVPLWVTSDKQEYAARTIRNKINSKLSEY 254
Query: 188 LIDYP-MLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKD 246
L ++P +++ G+R S+DW + +L V + W + G AA L
Sbjct: 255 LTEFPPLIKHAYGNVKGSR-SVDWTAAYE-MLSCDKSVDAVEWAKPGYTAACRQLYD--- 309
Query: 247 GFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLE 306
F T+RL+++ RN+P+ ALSGLSP+LHFGQISAQRC LE + + + E+++ + E
Sbjct: 310 -FCTRRLRHFNDKRNDPMAD-ALSGLSPWLHFGQISAQRCVLEVGRYKTIYKESVEAYFE 367
Query: 307 ELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTAD 363
E IVRRELADNFC+Y +YDSLKG + WA +SL+ H DKR Y+ E+ E ++T D
Sbjct: 368 EAIVRRELADNFCYYNEHYDSLKGLYSWAYESLQAHRKDKRSPCYSLEELEHSRTYD 424
>gi|193213030|ref|YP_001998983.1| deoxyribodipyrimidine photolyase [Chlorobaculum parvum NCIB 8327]
gi|193086507|gb|ACF11783.1| deoxyribodipyrimidine photolyase [Chlorobaculum parvum NCIB 8327]
Length = 459
Score = 269 bits (687), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 156/355 (43%), Positives = 212/355 (59%), Gaps = 21/355 (5%)
Query: 15 RIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGA 74
R+R L Q ++ + G V+YWM RDQRVR NWAL+ A +AN+ P+ V F L FLGA
Sbjct: 11 RVRHLNQ--IEDQHGTVIYWMSRDQRVRHNWALLFASQKANQLGQPLEVVFTLAPGFLGA 68
Query: 75 KARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREI 134
R FM RGLR ++ + E +LF GE +P + A LV DFSPL+ +
Sbjct: 69 PMRHYDFMFRGLREVETRLRE-LGVLFTALYGEPGKTLPEYAASRNAGALVADFSPLKLV 127
Query: 135 RRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYP-- 192
R K ++ +S T +EVDAHN+VP W+AS K EY+A+T+R K+N L E+L D+P
Sbjct: 128 RDWKQEVAPGLS--CTFYEVDAHNIVPCWLASPKQEYAARTIRPKLNTLREEFLTDFPEP 185
Query: 193 -MLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTK 251
+ QP + ++WD + +L+ V + E GE AA L+ DG
Sbjct: 186 ELQHQPDK----LPPPVEWDEM-ETLLKVDRSVKAVPALEPGEAAAELHLRDFVDG---- 236
Query: 252 RLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAI-DTFLEELIV 310
RL Y +RN+P A+SGLSPYLHFGQ+SAQ A EA AR EA + F+EEL +
Sbjct: 237 RLSRYADERNDP-NSGAVSGLSPYLHFGQLSAQHAAFEA--ARSKASEANREAFVEELFI 293
Query: 311 RRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPV 365
RREL++N+C+Y YDS G EWA+K+L +H D+R+ IYT EQFE+AQT DP+
Sbjct: 294 RRELSENYCYYNERYDSFDGIPEWAKKTLLEHTGDRRDAIYTPEQFEQAQTHDPL 348
>gi|443696862|gb|ELT97477.1| hypothetical protein CAPTEDRAFT_152478 [Capitella teleta]
Length = 504
Score = 269 bits (687), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 144/353 (40%), Positives = 212/353 (60%), Gaps = 12/353 (3%)
Query: 14 GRIRVL---KQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQ 70
R+R L K+ S D K V+YWM RDQRV+DNWAL+++ A VP+ + F L +
Sbjct: 49 NRVRTLTPCKKPSPDSKG--VLYWMSRDQRVQDNWALLYSQKLALDLEVPLYINFCLVPK 106
Query: 71 FLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSP 130
FL A RQ GFML+GL+ +++ + + +I F L G A D++P FV + +VTDF P
Sbjct: 107 FLEATIRQFGFMLKGLQEVEKECK-SLRISFHLHLGHATDHLPQFVEDHNIGAIVTDFCP 165
Query: 131 LREIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLID 190
LR + + + D + + +VDAHN+VP W AS K EY A+T+R KI+ L +Y +
Sbjct: 166 LRVPTKWVTDLVKSLPDEIPLFQVDAHNIVPCWEASPKQEYGARTIRNKIHNQLSKYFTE 225
Query: 191 YPMLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLT 250
+P + Q + ++DW + L V E+ W G A ++ L + F+
Sbjct: 226 FPPVIQHAFEAKAPCPAVDWIEAEKS-LEVDRSVKEVDWATPGTTAGLKNL----ESFIQ 280
Query: 251 KRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIV 310
KRL N+ DRNNP K ALS +SP+ HFG ++ QR L + + +++ ++EE ++
Sbjct: 281 KRLGNFDADRNNPNK-NALSNMSPWFHFGHVAPQRAMLMVNEMKTKYSKSVAAYIEEGVI 339
Query: 311 RRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTAD 363
RREL DN+CFYQPNYD++ GA+EWAR +LK H DKRE++Y+KEQ EK +T D
Sbjct: 340 RRELCDNYCFYQPNYDNIDGAYEWARLTLKAHRKDKREYVYSKEQLEKGKTHD 392
>gi|21673346|ref|NP_661411.1| DNA deoxyribodipyrimidine photolyase, class II [Chlorobium tepidum
TLS]
gi|21646440|gb|AAM71753.1| DNA deoxyribodipyrimidine photolyase, classII [Chlorobium tepidum
TLS]
Length = 459
Score = 268 bits (686), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 146/352 (41%), Positives = 211/352 (59%), Gaps = 17/352 (4%)
Query: 17 RVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKA 76
R+L+ + ++GPV+YWM RDQRVR NWAL+ A +AN+ P+ V F L FLGA
Sbjct: 11 RILRLNQREDRQGPVIYWMSRDQRVRHNWALLFACQKANQLGQPLEVVFTLSPSFLGAPM 70
Query: 77 RQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRR 136
R FM RGLR ++ + E + F + GE + +P + + A ++V DFSPL+ +R
Sbjct: 71 RHYDFMFRGLREVETRLRE-LGVPFTVLYGEPGETLPKYTEKRNAGVVVADFSPLKLVRG 129
Query: 137 CKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYP---M 193
K + ++S +EVDAHN+VP W+AS K EY+A+T+R K+N L E+L +P +
Sbjct: 130 WKLAVAQQLS--CAFYEVDAHNIVPCWLASPKQEYAARTIRPKLNALQGEFLTGFPEPEL 187
Query: 194 LEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRL 253
QP + W+++ +L+ + + E GE AA L+ F+T RL
Sbjct: 188 RHQP----DTLPPPVQWNAM-ETLLKVDRSIKAVPGLEPGETAAEARLRS----FVTGRL 238
Query: 254 KNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVRRE 313
Y +RN+P A+SGLSPYLHFGQ+SAQ EA ++ K + F+EEL +RRE
Sbjct: 239 SRYADERNDP-NSGAVSGLSPYLHFGQLSAQHATFEAARS-KASEVNREAFVEELFIRRE 296
Query: 314 LADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPV 365
L++N+C+Y YDS G EWA+K+L +HA D R+ IYT EQFE+AQT DP+
Sbjct: 297 LSENYCYYNERYDSFDGIPEWAKKTLMEHAGDHRDAIYTPEQFERAQTHDPL 348
>gi|158292451|ref|XP_313925.3| AGAP005052-PA [Anopheles gambiae str. PEST]
gi|157016998|gb|EAA09350.3| AGAP005052-PA [Anopheles gambiae str. PEST]
Length = 549
Score = 268 bits (686), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 147/351 (41%), Positives = 210/351 (59%), Gaps = 10/351 (2%)
Query: 15 RIRVLKQGSL--DKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFL 72
R+R+L D K+G V+YWM RD RV+DNWA + A A KN++P+ V FNL +FL
Sbjct: 95 RVRILSDAKTIEDGKQG-VLYWMSRDARVQDNWAFLFAQKLALKNDLPLHVCFNLVPKFL 153
Query: 73 GAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLR 132
A R FML+GL + I F L +G A +N+P FV++ +V DFSPLR
Sbjct: 154 DATIRHFKFMLKGLEEVAEECRR-LNIQFHLLRGSAGENVPAFVKKHKIGGVVCDFSPLR 212
Query: 133 EIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYP 192
+ D++ + + + +VDAHN+VPVWV S+KLEY+A+T+R K+NK LP YL +P
Sbjct: 213 VPMKWVDEVRKALPMEIPLCQVDAHNIVPVWVTSDKLEYAARTIRTKVNKNLPTYLTPFP 272
Query: 193 MLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKR 252
L + I+W ++ L+ V + W G ++ L+ F+ KR
Sbjct: 273 PLVKHPFTANFEADPINWTQVLD-TLQVDRTVEAVEWATPGYAGGVKTLQT----FVEKR 327
Query: 253 LKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVRR 312
L + RN+P + ALS LSP+ HFGQI+ QR L +K K E++ +F EE IVRR
Sbjct: 328 LGKFNDKRNDPTE-NALSNLSPWFHFGQIAVQRAVLTVKKHGKRYSESVASFCEEAIVRR 386
Query: 313 ELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTAD 363
EL+DNFCF+ NYD+L+GA++WARK+L DH DKR + Y++E+ E A+T D
Sbjct: 387 ELSDNFCFHNKNYDNLQGAYDWARKTLDDHRKDKRVYCYSREELETAKTHD 437
>gi|195332255|ref|XP_002032814.1| GM20985 [Drosophila sechellia]
gi|194124784|gb|EDW46827.1| GM20985 [Drosophila sechellia]
Length = 555
Score = 268 bits (685), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 153/352 (43%), Positives = 214/352 (60%), Gaps = 10/352 (2%)
Query: 15 RIRVLKQGSLDKKR--GPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFL 72
R+RVL + K+ G VVYWM RD RV+DNWAL+ A A K +P+ V F L +FL
Sbjct: 99 RVRVLSKTEDVKESSLGGVVYWMSRDGRVQDNWALLFAQRLALKLELPLTVVFCLVPKFL 158
Query: 73 GAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLR 132
A R FM+ GL+ +++ I F L G A + +P FV+ +V DF+PLR
Sbjct: 159 NATIRHYKFMMGGLQEVEQQCR-ALDIPFHLLMGPAVEKLPQFVKSKDIGAVVCDFAPLR 217
Query: 133 EIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYP 192
R+ + + + +V + +VDAHNVVP+WVAS+K EY+A+T+R KIN L EYL ++P
Sbjct: 218 LPRQWVEDVGKALPQTVPLVQVDAHNVVPLWVASDKQEYAARTIRNKINSKLGEYLSEFP 277
Query: 193 -MLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTK 251
+++ P +++DW + A+ L+ EV E+ W + G AA + L F ++
Sbjct: 278 PVVQHPHGTGCKNVKAVDWSAAYAS-LQCDMEVDEVQWAKPGYKAACQQLYE----FCSR 332
Query: 252 RLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVR 311
RL+++ RN+P ALSGLSP+LHFG ISAQRCALE ++ R + D F EE IVR
Sbjct: 333 RLRHFNDKRNDPTAD-ALSGLSPWLHFGHISAQRCALEVQRFRGQHKASADAFCEEAIVR 391
Query: 312 RELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTAD 363
RELADNFCFY +YDSLKG WA ++L H DKR+ Y+ E+ EK+ T D
Sbjct: 392 RELADNFCFYNEHYDSLKGLSSWAYQTLDAHRKDKRDPCYSLEELEKSLTYD 443
>gi|1401030|dbj|BAA05042.1| photolyase [Drosophila melanogaster]
Length = 640
Score = 268 bits (685), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 154/352 (43%), Positives = 212/352 (60%), Gaps = 10/352 (2%)
Query: 15 RIRVLKQGSLDKKR--GPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFL 72
R+RVL + K+ G VVYWM RD RV+DNWAL+ A A K +P+ V F L +FL
Sbjct: 184 RVRVLSKTEDVKESSLGGVVYWMSRDGRVQDNWALLFAQRLALKLELPLTVVFCLVPKFL 243
Query: 73 GAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLR 132
A R FM+ GL+ +++ I F L G A + +P FV+ +V DF+PLR
Sbjct: 244 NATIRHYKFMMGGLQEVEQQCR-ALDIPFHLLMGSAVEKLPQFVKSKDIGAVVCDFAPLR 302
Query: 133 EIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYP 192
R+ + + + SV + +VDAHNVVP+WVAS+K EY+A+T+R KIN L EYL ++P
Sbjct: 303 LPRQWVEDVGKALPKSVPLVQVDAHNVVPLWVASDKQEYAARTIRNKINSKLGEYLSEFP 362
Query: 193 -MLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTK 251
++ P ++DW + A+ L+ EV E+ W + G AA + L F ++
Sbjct: 363 PVVRHPHGTGCKNVNTVDWSAAYAS-LQCDMEVDEVQWAKPGYKAACQQLYE----FCSR 417
Query: 252 RLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVR 311
RL+++ RN+P ALSGLSP+LHFG ISAQRCALE ++ R + D F EE IVR
Sbjct: 418 RLRHFNDKRNDPTAD-ALSGLSPWLHFGHISAQRCALEVQRFRGQHKASADAFCEEAIVR 476
Query: 312 RELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTAD 363
RELADNFCFY +YDSLKG WA ++L H DKR+ Y+ E+ EK+ T D
Sbjct: 477 RELADNFCFYNEHYDSLKGLSSWAYQTLDAHRKDKRDPCYSLEELEKSLTYD 528
>gi|195581344|ref|XP_002080494.1| GD10512 [Drosophila simulans]
gi|194192503|gb|EDX06079.1| GD10512 [Drosophila simulans]
Length = 555
Score = 267 bits (683), Expect = 6e-69, Method: Compositional matrix adjust.
Identities = 153/352 (43%), Positives = 213/352 (60%), Gaps = 10/352 (2%)
Query: 15 RIRVLKQGSLDKKR--GPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFL 72
R+RVL + K+ G VVYWM RD RV+DNWAL+ A A K +P+ V F L +FL
Sbjct: 99 RVRVLSKTEDVKESSLGGVVYWMSRDGRVQDNWALLFAQRLALKLELPLTVVFCLVPKFL 158
Query: 73 GAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLR 132
A R FM+ GL+ +++ I F L G A + +P FV+ +V DF+PLR
Sbjct: 159 NATIRHYKFMMGGLQEVEQQCR-ALDIPFHLLMGPAVEKLPQFVKSKDIGAVVCDFAPLR 217
Query: 133 EIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYP 192
R+ + + + +V + +VDAHNVVP+WVAS+K EY+A+T+R KIN L EYL ++P
Sbjct: 218 LPRQWVEDVGKALPQTVPLVQVDAHNVVPLWVASDKQEYAARTIRNKINSKLGEYLSEFP 277
Query: 193 -MLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTK 251
+++ P +++DW + A+ L+ EV E+ W + G AA + L F ++
Sbjct: 278 PVVQHPHGTGCKNVKAVDWSAAYAS-LQCDMEVDEVQWAKPGYKAACQQLYE----FCSR 332
Query: 252 RLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVR 311
RL+++ RN+P ALSGLSP+LHFG ISAQRCALE ++ R + D F EE IVR
Sbjct: 333 RLRHFNDKRNDPTAD-ALSGLSPWLHFGHISAQRCALEVQRFRGQHKASADAFCEEAIVR 391
Query: 312 RELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTAD 363
RELADNFCFY +YDSLKG WA ++L H DKR+ Y E+ EK+ T D
Sbjct: 392 RELADNFCFYNEHYDSLKGLSSWAYQTLDAHRKDKRDPCYNLEELEKSLTYD 443
>gi|395519161|ref|XP_003763719.1| PREDICTED: deoxyribodipyrimidine photo-lyase-like [Sarcophilus
harrisii]
Length = 533
Score = 267 bits (682), Expect = 7e-69, Method: Compositional matrix adjust.
Identities = 147/352 (41%), Positives = 209/352 (59%), Gaps = 8/352 (2%)
Query: 15 RIRVLKQG-SLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLG 73
R+R++ Q L VYWM RDQRV+DNWA ++A A K +P+ V F L FLG
Sbjct: 83 RVRLISQDCHLQDHSQAFVYWMARDQRVQDNWAFLYAQRLALKQKLPLHVCFCLAPCFLG 142
Query: 74 AKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLRE 133
A R FMLRGL + E+ I F L G +D +P FV++ +VTDFSPL
Sbjct: 143 ATLRHYDFMLRGLEEVAEECEK-LCIPFHLLLGLPKDVLPPFVQKHSIGGIVTDFSPLVH 201
Query: 134 IRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPM 193
+ + + + V +VDAHN+VP WVAS+K EY A+T+R KI+ LP +L ++P
Sbjct: 202 HTQWVKDVQDALPRQVPFVQVDAHNIVPCWVASDKQEYGARTIRHKIHDRLPHFLTEFPP 261
Query: 194 LEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRL 253
+ + + +DW++ A L+ V E+ W + G + +L+ F+ +RL
Sbjct: 262 IICHPYPSSIQAEPVDWNACRAG-LQVDRSVKEVSWAKPGTAFGLTMLQS----FIAERL 316
Query: 254 KNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVRRE 313
+ +DRNNP K LS LSP+ HFGQ+S QR LE +K R P+++ F+EE +VRRE
Sbjct: 317 PYFGSDRNNPNK-DVLSNLSPWFHFGQVSVQRAILEVQKHRGRYPDSVANFVEEAVVRRE 375
Query: 314 LADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPV 365
LADNFCFY NYD L+GA++WA+ +L+ HA DKR H+Y+ EQ E +T DP+
Sbjct: 376 LADNFCFYNKNYDKLEGAYDWAQTTLRLHAKDKRPHLYSLEQLESGKTHDPL 427
>gi|24586396|ref|NP_523653.2| photorepair, isoform A [Drosophila melanogaster]
gi|7304148|gb|AAF59185.1| photorepair, isoform A [Drosophila melanogaster]
gi|19527513|gb|AAL89871.1| RE21178p [Drosophila melanogaster]
gi|220948232|gb|ACL86659.1| phr-PA [synthetic construct]
gi|220960434|gb|ACL92753.1| phr-PA [synthetic construct]
Length = 555
Score = 266 bits (681), Expect = 9e-69, Method: Compositional matrix adjust.
Identities = 154/352 (43%), Positives = 211/352 (59%), Gaps = 10/352 (2%)
Query: 15 RIRVLKQGSLDKKR--GPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFL 72
R+RVL + K+ G VVYWM RD RV+DNWAL+ A A K +P+ V F L +FL
Sbjct: 99 RVRVLSKTEDVKESSLGGVVYWMSRDGRVQDNWALLFAQRLALKLELPLTVVFCLVPKFL 158
Query: 73 GAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLR 132
A R FM+ GL+ +++ I F L G A + +P FV+ +V DF+PLR
Sbjct: 159 NATIRHYKFMMGGLQEVEQQCR-ALDIPFHLLMGSAVEKLPQFVKSKDIGAVVCDFAPLR 217
Query: 133 EIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYP 192
R+ + + + SV + +VDAHNVVP+WVAS+K EY+A+T+R KIN L EYL +P
Sbjct: 218 LPRQWVEDVGKALPKSVPLVQVDAHNVVPLWVASDKQEYAARTIRNKINSKLGEYLSVFP 277
Query: 193 -MLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTK 251
++ P ++DW + A+ L+ EV E+ W + G AA + L F ++
Sbjct: 278 PVVRHPHGTGCKNVNTVDWSAAYAS-LQCDMEVDEVQWAKPGYKAACQQLYE----FCSR 332
Query: 252 RLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVR 311
RL+++ RN+P ALSGLSP+LHFG ISAQRCALE ++ R + D F EE IVR
Sbjct: 333 RLRHFNDKRNDPTAD-ALSGLSPWLHFGHISAQRCALEVQRFRGQHKASADAFCEEAIVR 391
Query: 312 RELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTAD 363
RELADNFCFY +YDSLKG WA ++L H DKR+ Y+ E+ EK+ T D
Sbjct: 392 RELADNFCFYNEHYDSLKGLSSWAYQTLDAHRKDKRDPCYSLEELEKSLTYD 443
>gi|24586398|ref|NP_724613.1| photorepair, isoform B [Drosophila melanogaster]
gi|21627730|gb|AAM68868.1| photorepair, isoform B [Drosophila melanogaster]
Length = 535
Score = 266 bits (680), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 154/352 (43%), Positives = 211/352 (59%), Gaps = 10/352 (2%)
Query: 15 RIRVLKQGSLDKKR--GPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFL 72
R+RVL + K+ G VVYWM RD RV+DNWAL+ A A K +P+ V F L +FL
Sbjct: 79 RVRVLSKTEDVKESSLGGVVYWMSRDGRVQDNWALLFAQRLALKLELPLTVVFCLVPKFL 138
Query: 73 GAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLR 132
A R FM+ GL+ +++ I F L G A + +P FV+ +V DF+PLR
Sbjct: 139 NATIRHYKFMMGGLQEVEQQCR-ALDIPFHLLMGSAVEKLPQFVKSKDIGAVVCDFAPLR 197
Query: 133 EIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYP 192
R+ + + + SV + +VDAHNVVP+WVAS+K EY+A+T+R KIN L EYL +P
Sbjct: 198 LPRQWVEDVGKALPKSVPLVQVDAHNVVPLWVASDKQEYAARTIRNKINSKLGEYLSVFP 257
Query: 193 -MLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTK 251
++ P ++DW + A+ L+ EV E+ W + G AA + L F ++
Sbjct: 258 PVVRHPHGTGCKNVNTVDWSAAYAS-LQCDMEVDEVQWAKPGYKAACQQLYE----FCSR 312
Query: 252 RLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVR 311
RL+++ RN+P ALSGLSP+LHFG ISAQRCALE ++ R + D F EE IVR
Sbjct: 313 RLRHFNDKRNDPTAD-ALSGLSPWLHFGHISAQRCALEVQRFRGQHKASADAFCEEAIVR 371
Query: 312 RELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTAD 363
RELADNFCFY +YDSLKG WA ++L H DKR+ Y+ E+ EK+ T D
Sbjct: 372 RELADNFCFYNEHYDSLKGLSSWAYQTLDAHRKDKRDPCYSLEELEKSLTYD 423
>gi|51859619|gb|AAU11091.1| class-II photolyase [Antonospora locustae]
Length = 528
Score = 265 bits (678), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 146/335 (43%), Positives = 201/335 (60%), Gaps = 11/335 (3%)
Query: 31 VVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQ 90
VVYWM RDQRV+DNWAL+ A A ++ +P+ + F L +FL A RQ FML GLR ++
Sbjct: 97 VVYWMSRDQRVQDNWALLCAQGIAVRHGLPLFICFCLVPRFLDATTRQFRFMLAGLREVE 156
Query: 91 RNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICNRVSD-SV 149
+ I F + +G A + +P FV +V DF+PLR +R +C R+ V
Sbjct: 157 TEALQ-LGIAFHVLKGSAPEALPRFVEHHKIGCVVADFNPLRVVREWCSLLCERLRGMRV 215
Query: 150 TIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLE-QPIEKWTGTRQSI 208
++ +VDAHN+VP WV S+K E A+T+R KI++ LP +L +YP + P+ R +
Sbjct: 216 SVVQVDAHNIVPAWVVSDKQEAGARTMRPKIHRHLPAFLTEYPPVAVHPVSGPASVR--V 273
Query: 209 DWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRA 268
DW ++ A+V R V + W SG AA EVL D F ++RL Y RN+P +
Sbjct: 274 DWAALEASV-RADTGVGDCSWIRSGTRAAFEVL----DVFCSERLHAYADVRNDPARD-G 327
Query: 269 LSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVRRELADNFCFYQPNYDSL 328
LS +SPY HFGQI+ QR L R+ ++D F+EE +VRRELADNFC + NYDS+
Sbjct: 328 LSNMSPYFHFGQIAVQRAVLVVCSFRRTHGVSVDVFVEEAVVRRELADNFCLHNRNYDSV 387
Query: 329 KGAWEWARKSLKDHASDKREHIYTKEQFEKAQTAD 363
+GA WAR +L H +D+REH YT EQ E AQT D
Sbjct: 388 EGASSWARGTLDAHRADRREHTYTLEQLEHAQTHD 422
>gi|195431012|ref|XP_002063542.1| GK19412 [Drosophila willistoni]
gi|194159627|gb|EDW74528.1| GK19412 [Drosophila willistoni]
Length = 534
Score = 265 bits (678), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 154/353 (43%), Positives = 210/353 (59%), Gaps = 15/353 (4%)
Query: 15 RIRVLKQGSLDKK---RGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQF 71
R+R+L + +D + RG VVYWM RD R++DNWAL+ A A K ++P+AV F L +F
Sbjct: 78 RVRILSK-VIDVREGCRGGVVYWMSRDGRIQDNWALLFAQRLALKLDLPLAVVFCLVPKF 136
Query: 72 LGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPL 131
L A R FML GL+ +++ + I F L G A + +P FVR+ ++ DF+PL
Sbjct: 137 LNATLRHYKFMLGGLKEVEKECRD-LNIGFHLLLGPAREELPKFVRDNDIGAVICDFAPL 195
Query: 132 REIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDY 191
R R+ + + + V +VDAHN+VP+WVAS+K EY+A+T+R KIN L EYL ++
Sbjct: 196 RVPRQWVEDVTKGLPKDVPFTQVDAHNIVPLWVASDKQEYAARTIRNKINSKLGEYLTEF 255
Query: 192 PML-EQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLT 250
P++ + P K + I+W S +L V E+ W + G +AA L F T
Sbjct: 256 PVVAKHPHGK---SSAKINWTSAYE-MLECDKSVDEVEWAQPGYNAACRQLYE----FCT 307
Query: 251 KRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIV 310
+RL + RNNP ALSGLSP+LHFGQISAQRC LE ++ K + + F EE IV
Sbjct: 308 RRLGKFHNQRNNPTAD-ALSGLSPWLHFGQISAQRCVLEVKRYAKQHKASTEAFCEETIV 366
Query: 311 RRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTAD 363
RRELADNFC+Y NYDSLKG WA +SL H D R+ Y E E A+T D
Sbjct: 367 RRELADNFCYYNENYDSLKGVTSWAYQSLDAHRKDPRDPCYKLEDLETARTYD 419
>gi|195474508|ref|XP_002089533.1| GE19152 [Drosophila yakuba]
gi|194175634|gb|EDW89245.1| GE19152 [Drosophila yakuba]
Length = 535
Score = 265 bits (678), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 152/352 (43%), Positives = 212/352 (60%), Gaps = 10/352 (2%)
Query: 15 RIRVLKQGSLDKKR--GPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFL 72
R+RVL + K+ G VVYWM RD RV+DNWAL+ A A K +P++V F L +FL
Sbjct: 79 RVRVLSKTDDVKESSLGGVVYWMSRDGRVQDNWALLFAQRLAFKLELPLSVVFCLVPKFL 138
Query: 73 GAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLR 132
A R FM+ GL+ +++ I F L G A + +P FV+ ++ DF+PLR
Sbjct: 139 NATIRHYKFMMGGLQEVEQQCR-ALDIPFHLLMGPAVEKLPEFVKSKDIGAVICDFAPLR 197
Query: 133 EIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYP 192
R+ + + + SV + +VDAHNVVP+WVAS+K EY+A+T+R KIN L E+L ++P
Sbjct: 198 LPRQWVENVSKALPKSVPMVQVDAHNVVPLWVASDKQEYAARTIRNKINSKLGEFLSEFP 257
Query: 193 -MLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTK 251
++ P ++DW + A+ L+ EV E+ W + G AA + L F ++
Sbjct: 258 PVVRHPFGTGCKNVNAVDWLAAYAS-LQCDMEVEEVQWAKPGYKAACQQLYE----FCSR 312
Query: 252 RLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVR 311
RL+++ RN+P ALSGLSP+LHFG ISAQRCALE ++ R + D+F EE IVR
Sbjct: 313 RLRHFNDKRNDPTAD-ALSGLSPWLHFGHISAQRCALEVQRFRGQYKASADSFCEEAIVR 371
Query: 312 RELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTAD 363
RELADNFCFY YDSLKG WA ++L H DKR+ Y E+ EK+ T D
Sbjct: 372 RELADNFCFYNDQYDSLKGLSSWAYQTLDAHRKDKRDPCYRLEELEKSLTYD 423
>gi|303245763|ref|ZP_07332046.1| deoxyribodipyrimidine photolyase [Desulfovibrio fructosovorans JJ]
gi|302493026|gb|EFL52891.1| deoxyribodipyrimidine photolyase [Desulfovibrio fructosovorans JJ]
Length = 453
Score = 265 bits (677), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 154/352 (43%), Positives = 196/352 (55%), Gaps = 13/352 (3%)
Query: 11 VQPGRIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQ 70
V P RIR L + G VVYWM RDQR DNWAL+HA A ++ P+ V F L
Sbjct: 3 VHPARIRSL--AGPPPRSGSVVYWMSRDQRAADNWALLHAASLAGESGAPLVVVFALAPA 60
Query: 71 FLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSP 130
+ GA RQ FML GL + + I + GE +P F+ A + VTDF P
Sbjct: 61 YPGATRRQYAFMLAGLAETEAALR-AHSIPLAVLTGEPGFTVPAFLHSVDAGVCVTDFDP 119
Query: 131 LREIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLID 190
LR R K + V+ + EVDAHNV P ++AS+K EY+A TLR KI++LLPE+L
Sbjct: 120 LRVKRVWKAAVA--VASPGALVEVDAHNVAPCFLASQKREYAAATLRPKIHRLLPEFLKP 177
Query: 191 YPMLEQ-PIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFL 249
+P L P G +DW + A ++ VP + G AA +VL D FL
Sbjct: 178 FPDLPTFPAANLDGF-APVDWRAA-ADFVQADPSVPPVTGIVPGSAAATQVL----DDFL 231
Query: 250 TKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELI 309
RL+ Y RN+P A SGLSPY HFGQ++ QR AL +AR E D FLEEL+
Sbjct: 232 RDRLEGYAARRNDP-NAGATSGLSPYFHFGQLAPQRAALATLEARSRAKEGADAFLEELV 290
Query: 310 VRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQT 361
VRRELADNFC Y+P YDS + EWARK+L HA+D R ++Y +E F A T
Sbjct: 291 VRRELADNFCLYEPEYDSFEALPEWARKTLAAHAADSRPYLYDRETFAAATT 342
>gi|345496163|ref|XP_001603285.2| PREDICTED: deoxyribodipyrimidine photo-lyase-like [Nasonia
vitripennis]
Length = 546
Score = 265 bits (676), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 147/352 (41%), Positives = 210/352 (59%), Gaps = 8/352 (2%)
Query: 15 RIRVLKQGS-LDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLG 73
R+R+L + + +VYWMFRD RV DNWA++ A A KN VP+ V F + +FL
Sbjct: 82 RVRILTDSDEVSSESKGIVYWMFRDARVHDNWAMLFAQKIALKNKVPLHVCFCILPKFLD 141
Query: 74 AKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLRE 133
A R F+L L ++++ +E I F L GE I NFV + ++ DF PLR
Sbjct: 142 ATIRHYKFLLEALEEVEKDCKE-LNINFHLLHGEPNTAIINFVEKYKMGAVIADFFPLRL 200
Query: 134 IRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPM 193
+ I ++ + + +VDAHN+VP WVASEKLEY+A+T+R KIN L E+L ++P
Sbjct: 201 PLFWLEDIKKKLPKKIPLCQVDAHNIVPCWVASEKLEYAARTIRNKINSKLDEFLTEFPP 260
Query: 194 LEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRL 253
+ + I+WD+ + VL + V +I W ++G + L D FL RL
Sbjct: 261 VIKHPHTSDQKFDKINWDTALDDVLVDKS-VDKITWAKAGYKGGIAEL----DKFLKIRL 315
Query: 254 KNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVRRE 313
+ Y RNNP+ ALS LSP+ HFG IS QRC LEA+K + ++++ F+EE IVRRE
Sbjct: 316 RIYDEKRNNPI-FNALSNLSPWFHFGMISVQRCILEAKKYKSQYNKSVEAFMEEAIVRRE 374
Query: 314 LADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPV 365
L+DNFCFY +YDSLKGA++WAR++L H +DKR++IYT + E T D +
Sbjct: 375 LSDNFCFYNEHYDSLKGAYDWARETLNQHRNDKRDYIYTLNELENGLTHDDL 426
>gi|356497173|ref|XP_003517437.1| PREDICTED: LOW QUALITY PROTEIN: deoxyribodipyrimidine
photo-lyase-like [Glycine max]
Length = 360
Score = 265 bits (676), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 128/183 (69%), Positives = 145/183 (79%), Gaps = 3/183 (1%)
Query: 186 EYLIDYP--MLEQPIEKWTGTRQS-IDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLK 242
+YLID+P +E P KW T IDWD +I VLR+GAEVPE+GWCE GE AA EVL
Sbjct: 46 DYLIDFPDIEVEPPTRKWMATENHYIDWDVLIGEVLRRGAEVPEVGWCEPGEIAASEVLM 105
Query: 243 GSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAID 302
G K+GFLTKRLK Y DRNNP P ALSGLSPYLHFGQISAQRCALEA K + P+AID
Sbjct: 106 GIKNGFLTKRLKGYSLDRNNPCDPNALSGLSPYLHFGQISAQRCALEAGKQQNSHPQAID 165
Query: 303 TFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTA 362
FLEELIVRRELADN+CFYQP+YDSLKGAW WA+ +L +HA+DKREHIYT+EQ EK TA
Sbjct: 166 AFLEELIVRRELADNYCFYQPHYDSLKGAWAWAQNTLIEHATDKREHIYTREQLEKTLTA 225
Query: 363 DPV 365
DP+
Sbjct: 226 DPL 228
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/44 (56%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
Query: 1 MASLTPPSTAVQPGRIRVLKQG-SLDKKRGPVVYWMFRDQRVRD 43
MAS VQ G +R LK+G + GPVVYWMFRDQRVRD
Sbjct: 1 MASTASSPMTVQAGLVRTLKEGLGGEAGSGPVVYWMFRDQRVRD 44
>gi|688103|gb|AAB32328.1| photorepair gene [Drosophila melanogaster]
Length = 536
Score = 264 bits (675), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 155/353 (43%), Positives = 213/353 (60%), Gaps = 11/353 (3%)
Query: 15 RIRVLKQGSLDKKR--GPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFL 72
R+RVL + K+ G VVYWM RD RV+DNWAL+ A A K +P+ V F L +FL
Sbjct: 79 RVRVLSKTEDVKESSLGGVVYWMSRDGRVQDNWALLFAQRLALKLELPLTVVFCLVPKFL 138
Query: 73 GAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLR 132
A R FM+ GL+ +++ I F L G A + +P FV+ +V DF+PLR
Sbjct: 139 NATIRHYKFMMGGLQEVEQQCR-ALDIPFHLLMGSAVEKLPQFVKSKDIGAVVCDFAPLR 197
Query: 133 EIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDY- 191
R+ + + + SV + +VDAHNVVP+WVAS+K EY+A+T+R KIN L EYL ++
Sbjct: 198 LPRQWVEDVGKALPKSVPLVQVDAHNVVPLWVASDKQEYAARTIRNKINSKLGEYLSEFP 257
Query: 192 PMLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTK 251
P++ P ++DW + A+ L+ EV E+ W + G AA + L F ++
Sbjct: 258 PVVRHPHGTGCKNVNTVDWSAAYAS-LQCDMEVDEVQWAKPGYKAACQQLY----EFCSR 312
Query: 252 RLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEA-IDTFLEELIV 310
RL+++ RN+P ALSGLSP+LHFG ISAQRCALE ++ R +A D F EE IV
Sbjct: 313 RLRHFNDKRNDPTAD-ALSGLSPWLHFGHISAQRCALEVQRFRGGQHKASADAFCEETIV 371
Query: 311 RRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTAD 363
RRELADNFCFY +YDSLKG WA ++L H DKR+ Y+ E+ EK+ T D
Sbjct: 372 RRELADNFCFYNEHYDSLKGLSSWAYQTLDAHRKDKRDPCYSLEELEKSLTYD 424
>gi|194863692|ref|XP_001970566.1| GG23307 [Drosophila erecta]
gi|190662433|gb|EDV59625.1| GG23307 [Drosophila erecta]
Length = 554
Score = 264 bits (675), Expect = 5e-68, Method: Compositional matrix adjust.
Identities = 152/352 (43%), Positives = 210/352 (59%), Gaps = 10/352 (2%)
Query: 15 RIRVLKQGSLDKKR--GPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFL 72
R+RVL + K+ G VVYWM RD RV+DNWAL+ A A K +P++V F L +FL
Sbjct: 99 RVRVLSKSDDVKESSLGGVVYWMSRDGRVQDNWALLFAQRLAFKLELPLSVVFCLVPKFL 158
Query: 73 GAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLR 132
A R FM+ GL+ +++ I F L G A + +P FV+ +V DF+PLR
Sbjct: 159 NATIRHYKFMMGGLQEVEQQCR-ALDIPFHLLMGPAVEKLPEFVKSKDIGAVVCDFAPLR 217
Query: 133 EIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYP 192
R+ + + + SV + +VDAHNVVP+WVAS+K EY+A+T+R KIN L E+L ++P
Sbjct: 218 LPRQWVEDVGKALPKSVPLVQVDAHNVVPLWVASDKQEYAARTIRNKINSKLGEFLSEFP 277
Query: 193 -MLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTK 251
++ P +DW + A+ L+ EV E+ W G A + L F ++
Sbjct: 278 PVVRHPYGTGCKNVNVVDWSAAYAS-LQCDMEVGEVQWATPGYKGACQQLYE----FCSR 332
Query: 252 RLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVR 311
RL+++ RN+P ALSGLSP+LHFG ISAQRCALE ++ R + D F EE IVR
Sbjct: 333 RLRHFNDKRNDPTAD-ALSGLSPWLHFGHISAQRCALEVQRFRGQHKASADAFCEEAIVR 391
Query: 312 RELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTAD 363
RELADNFCFY +YDSLKG WA ++L H DKR+ Y+ E+ EK+ T D
Sbjct: 392 RELADNFCFYNEHYDSLKGLSTWAYQTLDAHRKDKRDPCYSLEELEKSLTYD 443
>gi|320169667|gb|EFW46566.1| deoxyribodipyrimidine photo-lyase [Capsaspora owczarzaki ATCC
30864]
Length = 634
Score = 264 bits (674), Expect = 6e-68, Method: Compositional matrix adjust.
Identities = 151/371 (40%), Positives = 211/371 (56%), Gaps = 47/371 (12%)
Query: 31 VVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQ 90
V+YWM RDQRV+DNWALI+A A ++ VP+ V F L FL A RQ FM+ GLR ++
Sbjct: 130 VLYWMSRDQRVQDNWALIYAQQLAIQHRVPLFVGFCLVPHFLDATIRQYDFMMEGLREVE 189
Query: 91 RNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICNRVSDS-- 148
+ I F LF G A +++P FV +VTDFSP+R I+R ++ N ++ +
Sbjct: 190 TAL-RGLNISFHLFTGTAAEHLPGFVESKRLGAVVTDFSPVRVIQRWTTELANSLAQTTI 248
Query: 149 -----------VTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYP-MLEQ 196
+ + ++DAHNVVP W AS KLEY+A+T+R K++KLL E+L ++P +
Sbjct: 249 ATTGATQSHTGIPLIQLDAHNVVPCWHASPKLEYAARTIRPKLHKLLSEFLTEFPEVAAH 308
Query: 197 PIEK----------------------WTGTRQSIDWDSIIAA--VLRKGAEVPEIGWCES 232
P +G +DWD+ A+ V R VP+I
Sbjct: 309 PCSARQSPSSPQSARASSAASSNAHFQSGLSAPVDWDAARASLQVNRTITAVPDI---VP 365
Query: 233 GEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARK 292
G A M L+ F+ +R++ + RN+P R LS LSPY HFGQI+ QR L A
Sbjct: 366 GTRAGMTTLR----TFVEQRMRYFGAVRNDP-NERVLSNLSPYFHFGQIAPQRAILVAYA 420
Query: 293 ARKLCPEAIDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYT 352
A C E++D F+EE +VRREL+DNFCFY PNYDS+ GA WA+++L+ HA D RE +YT
Sbjct: 421 AHARCRESVDVFVEEALVRRELSDNFCFYNPNYDSIAGASAWAQETLQAHAGDAREFVYT 480
Query: 353 KEQFEKAQTAD 363
+E+ E A T D
Sbjct: 481 EEELESATTHD 491
>gi|167524661|ref|XP_001746666.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163774936|gb|EDQ88562.1| predicted protein [Monosiga brevicollis MX1]
Length = 884
Score = 262 bits (670), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 153/365 (41%), Positives = 217/365 (59%), Gaps = 17/365 (4%)
Query: 8 STAVQPG-------RIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVP 60
S + PG R+R + G K+ V+YWM RDQR DNWAL++A A + +VP
Sbjct: 378 SQGIPPGPKDFLMERVRAVTPGVDPKEGQCVLYWMSRDQRPTDNWALLYARHLAQERDVP 437
Query: 61 VAVAFNLFDQFLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECG 120
+ V F L +FL A RQ GFML GL++++ ++ + I F L G A+D +P F E
Sbjct: 438 LRVVFCLVPKFLEATIRQFGFMLDGLQVVETHLRKK-HIPFHLLTGYAKDVLPKFAEEQE 496
Query: 121 ASLLVTDFSPLREIRRCKDKICNRVSD-SVTIHEVDAHNVVPVWVASEKLEYSAKTLRGK 179
A +V D SPLR + +++ D +V +++VDAHN+VPVW AS K EY+A+T+R K
Sbjct: 497 ACAVVCDMSPLRVPMAWVKETGSKLKDMNVPLYQVDAHNIVPVWHASPKQEYAARTIRNK 556
Query: 180 INKLLPEYLIDYPMLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAME 239
I++ L L +P LE ++DW + L +V E+ W + G + M+
Sbjct: 557 IHQKLDTCLQPFPELESNSNS-VQLPDTVDWKKARES-LEINWDVKEVDWLKPGYEGGMK 614
Query: 240 VLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEAR-KARKLCP 298
+L + F+ +RL Y DRN+P ALS LSPY HFGQIS QR LE R K R
Sbjct: 615 ML----EEFINERLHRYADDRNDP-NLDALSNLSPYYHFGQISVQRVVLELRSKQRGKYA 669
Query: 299 EAIDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEK 358
E + ++EE +VRREL+DNFCFY YDS++GA WA+++L H+ DKREH+YT++Q E
Sbjct: 670 EGVKAYIEEAVVRRELSDNFCFYNHRYDSVEGASAWAQETLDVHSKDKREHLYTRKQLEN 729
Query: 359 AQTAD 363
A+TAD
Sbjct: 730 AETAD 734
>gi|303283462|ref|XP_003061022.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226457373|gb|EEH54672.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 457
Score = 262 bits (670), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 160/350 (45%), Positives = 205/350 (58%), Gaps = 22/350 (6%)
Query: 34 WMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQRNI 93
W RDQRV DNWAL+HA+ A NVPVA+ F L F A ARQ FMLRGLR + +
Sbjct: 1 WCSRDQRVDDNWALLHALSVAKSRNVPVAIVFVLVPSFASASARQYAFMLRGLREMAKTC 60
Query: 94 EETFQILFFLFQGEAEDNIPNFVREC--GASLLVTDFSPLREIRRCKDKICNRVSDS-VT 150
E T ++ F L +G+A ASL+VTDFSPLR R ++ + + + + VT
Sbjct: 61 EAT-RLPFHLVRGDANPAAAAAAAATRLDASLVVTDFSPLRAPREWRNDLSDALKRANVT 119
Query: 151 IHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQPIEKWTG------- 203
+HEVDAHNVVPVW AS K EY+A+T+R +I K L +L +P + +
Sbjct: 120 VHEVDAHNVVPVWEASNKREYAARTIRPRITKRLAAFLTSFPTRDAVRDAALAAAASPRA 179
Query: 204 ----TRQSIDWDSIIA-AVLRKGAEVPEIGWCE----SGEDAAMEVLKGSKDGFLTKRLK 254
T + +DWD++IA A R G VPE GE AA L G D FL RL
Sbjct: 180 TDVPTPERVDWDALIADARGRDGGVVPETLHPTRRKPPGEAAARRALVGGPDAFLPSRLA 239
Query: 255 NYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDT-FLEELIVRRE 313
Y RN+P PRALSGLSPYLHFGQ+SAQR ALE AR A F+EE++VR E
Sbjct: 240 MY-DKRNDPNVPRALSGLSPYLHFGQLSAQRVALETNAARTEATAAAADAFVEEVVVRSE 298
Query: 314 LADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTAD 363
L+DN+CF++PNYD++ GA WA +SL+ HA D R+ Y+ E+ E T D
Sbjct: 299 LSDNYCFHEPNYDNINGASGWAIESLRLHAEDARDPAYSLEELESGSTRD 348
>gi|321460192|gb|EFX71237.1| DNA photolyase 2 [Daphnia pulex]
Length = 523
Score = 262 bits (669), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 146/351 (41%), Positives = 213/351 (60%), Gaps = 10/351 (2%)
Query: 15 RIRVL-KQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLG 73
R R+L K L G ++YWM R+QRV+DNWAL++A A K +P+ + F L FLG
Sbjct: 64 RCRLLSKSMELGDCGGGILYWMSREQRVQDNWALLYAQRLALKMKLPLHICFCLVPTFLG 123
Query: 74 AKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLRE 133
A RQ GFML+GL ++ ++ +I F L +GE++ +P+ + + +V DFSPLR
Sbjct: 124 ATIRQFGFMLKGLEEVETECQK-LKIEFHLLKGESQICVPDLITKLKLDAVVADFSPLRV 182
Query: 134 IRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYP- 192
DK+ + +V ++DAHN+VPVWVAS+K E A+T+R KIN L E+L ++P
Sbjct: 183 PLSWIDKVKESIPKNVPFCQIDAHNIVPVWVASDKQEVGARTIRKKINDKLDEFLTEFPP 242
Query: 193 MLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKR 252
++ P T + S+DW + A L V E+ W G + ++ L F +R
Sbjct: 243 VIVHPHPAKTKAK-SVDWKAA-DAYLEVDRTVGEVDWITPGTKSGLQELFN----FCQRR 296
Query: 253 LKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVRR 312
LK Y RN+P ALS LSP+LHFGQISAQRC LE + + +++D ++EE I+RR
Sbjct: 297 LKMYAEKRNDP-NLAALSNLSPWLHFGQISAQRCILEVKGYKTKHAKSVDAYMEETIIRR 355
Query: 313 ELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTAD 363
EL+DNFCFY NYD+LKGA WA+++L+ H DKR + + +Q E+ +T D
Sbjct: 356 ELSDNFCFYNTNYDNLKGAANWAQETLEVHKKDKRPALLSAQQLEEGKTHD 406
>gi|298530238|ref|ZP_07017640.1| deoxyribodipyrimidine photolyase [Desulfonatronospira thiodismutans
ASO3-1]
gi|298509612|gb|EFI33516.1| deoxyribodipyrimidine photolyase [Desulfonatronospira thiodismutans
ASO3-1]
Length = 448
Score = 261 bits (668), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 150/356 (42%), Positives = 208/356 (58%), Gaps = 14/356 (3%)
Query: 11 VQPGRIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQ 70
V P RI+ ++ G+ D GPV+YWM RDQR++DNWAL+HA D A + P+ + F L D
Sbjct: 3 VHPRRIQEIRTGNQDS--GPVIYWMSRDQRIKDNWALVHAQDLALHLSRPLRIVFCLADG 60
Query: 71 FLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSP 130
FL A RQ FMLRGL + E+ I L +GEA +P ++ + AS LV DF P
Sbjct: 61 FLQAGLRQFDFMLRGLHECA-GVAESLNIPLDLVRGEAGLVLPAYLEKHRASFLVMDFDP 119
Query: 131 LREIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLID 190
LR + + + ++ + H VDAHN+VP W S+K EY+A+T+R KI++ L E+L D
Sbjct: 120 LRIKKSWQKAVLDKTG--IPAHLVDAHNIVPCWSTSQKQEYAARTIRPKIHRQLEEFLED 177
Query: 191 YPMLE-QPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFL 249
YP ++ P GT +D D ++ + P + W G A EVL D F+
Sbjct: 178 YPDVKPHPYPAQAGT--GVDPDGLLQEMDLDKTITP-VRWLSPGPAGAGEVL----DDFM 230
Query: 250 TKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELI 309
RL Y RN+P + LS LSPYLHFG SAQR AL+ +K ++ + FLEELI
Sbjct: 231 AHRLSLYHEQRNDP-NMQVLSNLSPYLHFGHTSAQRVALQVKKQLDTPVQSREAFLEELI 289
Query: 310 VRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPV 365
VRREL+DNFC Y NYD+ +G WA+K+L H SD R+++Y + E+ T DP+
Sbjct: 290 VRRELSDNFCHYNQNYDNFQGLPAWAQKTLDKHRSDSRDYLYEPQALEQGLTHDPL 345
>gi|195401525|ref|XP_002059363.1| GJ17708 [Drosophila virilis]
gi|194142369|gb|EDW58775.1| GJ17708 [Drosophila virilis]
Length = 530
Score = 261 bits (666), Expect = 5e-67, Method: Compositional matrix adjust.
Identities = 151/357 (42%), Positives = 211/357 (59%), Gaps = 11/357 (3%)
Query: 10 AVQPGRIRVLKQGS--LDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNL 67
A + R+RVL S ++ +G V+YWM RD RV+DNWAL+ A A K +P+ V F L
Sbjct: 68 AFKKKRVRVLSTVSDVKEQSKGGVLYWMSRDARVQDNWALLFAQRLALKLELPLTVVFCL 127
Query: 68 FDQFLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTD 127
+FL A R FML GL+ +++ E I F L G A + +P FV ++ D
Sbjct: 128 VPKFLNATLRHYKFMLGGLQEVEQQCHE-LNISFQLLLGPAAERLPEFVTAEDIGAVICD 186
Query: 128 FSPLREIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEY 187
F+PLR R+ + + V + +VDAHN+VP+WV SEK EY+A+T+R KIN L E+
Sbjct: 187 FAPLRLPRQWVADVVKALPGHVPLTQVDAHNIVPLWVTSEKQEYAARTIRNKINSKLGEF 246
Query: 188 LIDYP-MLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKD 246
L ++P ++ P K ++S DW + A +L V + W + G A L
Sbjct: 247 LSEFPPVIRHPHGK-GQAKESTDWTAAYA-LLSCDKTVDAVDWAKPGYTAGCRQLYE--- 301
Query: 247 GFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLE 306
F T+RL+++ RN+P ALSGLSP+LHFGQISAQRC LE ++ + + D F E
Sbjct: 302 -FCTRRLRHFNEKRNDPTAD-ALSGLSPWLHFGQISAQRCILEVQRYSAMHKASADAFCE 359
Query: 307 ELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTAD 363
E IVRRELADNFC+Y +YDSLKG +WA ++L+ H DKR YT E+ E+A+T D
Sbjct: 360 EAIVRRELADNFCYYNEHYDSLKGLHDWAYQTLQAHRKDKRSPCYTLEELEQARTYD 416
>gi|78188846|ref|YP_379184.1| DNA photolyase, class 2 [Chlorobium chlorochromatii CaD3]
gi|78171045|gb|ABB28141.1| Deoxyribodipyrimidine photo-lyase type II [Chlorobium
chlorochromatii CaD3]
Length = 459
Score = 260 bits (664), Expect = 9e-67, Method: Compositional matrix adjust.
Identities = 153/360 (42%), Positives = 211/360 (58%), Gaps = 20/360 (5%)
Query: 9 TAVQPGRIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLF 68
+ V P R+R+L +D G V+YWM RDQRVR NWAL+ A +A P+ V F L
Sbjct: 4 SPVDPRRVRLLNH-HIDGN-GVVIYWMSRDQRVRHNWALLFARWKAAMLQQPLMVVFTLA 61
Query: 69 DQFLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDF 128
FLGA R + GL+ ++ + I F + QGE + +P + AS++V D+
Sbjct: 62 PSFLGAPLRHYDVLFNGLQEVETELR-ALNIPFMVLQGEPSEELPRYAMHHNASMVVADY 120
Query: 129 SPLREIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYL 188
SPL R K+++ +S V ++EVDAHN+VP VAS K EY+A+T+R KINKLL E+L
Sbjct: 121 SPLHLTRCWKNQVAEALS--VPLYEVDAHNIVPCRVASPKQEYAARTIRPKINKLLGEFL 178
Query: 189 IDYPMLE---QPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSK 245
+P LE QP+ T ++W + + A V +GW +GE A L+
Sbjct: 179 TPFPELEALPQPL-----TEPPVNWQKLRSH-FHADASVAPVGWLTAGEAGAHATLQC-- 230
Query: 246 DGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFL 305
F+ ++L Y T RN+P A S LSPYLHFGQIS Q AL+ KA E D FL
Sbjct: 231 --FVQQKLNGYATQRNDP-SLEATSRLSPYLHFGQISTQFVALQV-KAAHAPQEDKDAFL 286
Query: 306 EELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPV 365
EELIVRREL+DN+C Y +YD L G WA+++L HA+D R++IY+ E FE+A+T DP+
Sbjct: 287 EELIVRRELSDNYCHYNASYDRLSGIPAWAQETLARHATDPRDYIYSHEAFEQAKTHDPL 346
>gi|387152011|ref|YP_005700947.1| DNA photolyase FAD-binding protein [Desulfovibrio vulgaris RCH1]
gi|311232455|gb|ADP85309.1| DNA photolyase FAD-binding protein [Desulfovibrio vulgaris RCH1]
Length = 478
Score = 259 bits (661), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 152/368 (41%), Positives = 211/368 (57%), Gaps = 22/368 (5%)
Query: 8 STAVQPGRIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNL 67
S V PGR V + G RGPV+YWM R+ R DNWAL+HA+ +A P+AV + L
Sbjct: 2 SGRVHPGR--VWRHGDSRAVRGPVLYWMHREHRAHDNWALVHAIGEAKAAGAPLAVVWCL 59
Query: 68 FDQFLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTD 127
+FL A RQ F+LRG+R + E I FFL QG+ D +P F G L+VTD
Sbjct: 60 SPRFLDAAYRQFHFLLRGMRGTAETLRE-HGIPFFLLQGDPADEVPRFAATHGTGLVVTD 118
Query: 128 FSPLREIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEY 187
F LR R ++ R + + +HEVD NVVP +AS+K EY+A+TLR KI++LLPEY
Sbjct: 119 FDVLRLKRAWLGQV--REALACPLHEVDGRNVVPCRMASDKREYAARTLRPKIHRLLPEY 176
Query: 188 LIDYPMLE---QPIEKWTG----TRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEV 240
L +P L + W + DWD+++AA VP + +G DA +
Sbjct: 177 LDPFPSLATEASGVAAWKAPVPDAMAAPDWDALLAA-HPADRSVPAL----TGPDAPVPG 231
Query: 241 LKGSK---DGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLC 297
+G++ + FLT R+ Y RN+P A+SGLSPYLHFG ++AQR +
Sbjct: 232 EEGARRTLETFLTSRIHRY-EKRNDP-NADAVSGLSPYLHFGMMAAQRVVQRVTASTAGS 289
Query: 298 PEAIDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFE 357
+A +F+EEL+VRRELADNFC + P+YD++ WA+ +L H D R H+Y + E
Sbjct: 290 ADARASFIEELVVRRELADNFCLHTPDYDAVTCFPAWAQGTLDRHRDDPRPHLYDEAALE 349
Query: 358 KAQTADPV 365
KA+TADP+
Sbjct: 350 KARTADPL 357
>gi|119357754|ref|YP_912398.1| deoxyribodipyrimidine photo-lyase type II [Chlorobium
phaeobacteroides DSM 266]
gi|119355103|gb|ABL65974.1| Deoxyribodipyrimidine photo-lyase type II [Chlorobium
phaeobacteroides DSM 266]
Length = 468
Score = 258 bits (659), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 154/354 (43%), Positives = 205/354 (57%), Gaps = 15/354 (4%)
Query: 11 VQPGRIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQ 70
+ P R RVL S K G V+YWM RDQR+ NWAL+ A ++A + P+ V F L
Sbjct: 15 IDPRRTRVL--NSCSDKPGAVIYWMSRDQRLNHNWALLFAREKAARKGQPLVVVFALAPS 72
Query: 71 FLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSP 130
FL A R FML+GL + +E I F L +GE + I + + A +VTDFSP
Sbjct: 73 FLDAPFRHYDFMLKGLEETSKALER-INIPFMLLEGEPDTEISRYACQSEAGAVVTDFSP 131
Query: 131 LREIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLID 190
L R K K + + + ++EVDAHN+VP W AS+K EY+A+TLR K+ L E+L+
Sbjct: 132 LNISRNWKKKAADIL--DIPLYEVDAHNIVPCWYASDKQEYAARTLRPKLQARLDEFLVP 189
Query: 191 YPMLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLT 250
+P + P+ +S DW + L+K VP + GE AA E L + F+
Sbjct: 190 FPTI-LPLPAPHVHHRSPDWKQ-VRERLQKDRSVPPVNRIAPGETAAAESL----ENFIK 243
Query: 251 KRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDT-FLEELI 309
RL Y T RN+P ALS LSPYLHFGQISAQ AL ++R P+ T FLEELI
Sbjct: 244 SRLSGYATARNDP-NSNALSQLSPYLHFGQISAQHVALRVAESR--APQKDKTAFLEELI 300
Query: 310 VRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTAD 363
+RREL+DNFC Y P+YD +G WA+++L H DKRE++YT + FEKA T D
Sbjct: 301 IRRELSDNFCNYNPSYDRFEGIPAWAKQTLLLHGQDKREYLYTIDVFEKAATHD 354
>gi|120603889|ref|YP_968289.1| deoxyribodipyrimidine photo-lyase [Desulfovibrio vulgaris DP4]
gi|120564118|gb|ABM29862.1| Deoxyribodipyrimidine photo-lyase type II [Desulfovibrio vulgaris
DP4]
Length = 473
Score = 258 bits (658), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 151/368 (41%), Positives = 210/368 (57%), Gaps = 22/368 (5%)
Query: 8 STAVQPGRIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNL 67
S V PGR V + G RGPV+YWM R+ R DNWAL+HA+ +A P+AV + L
Sbjct: 2 SGRVHPGR--VCRHGDSRAVRGPVLYWMHREHRAHDNWALLHAIGEAKAAGAPLAVVWCL 59
Query: 68 FDQFLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTD 127
+FL A RQ F+LRG+R + E I FFL QG+ D +P F G L+VTD
Sbjct: 60 SPRFLDAAYRQFHFLLRGMRGTAETLRE-HGIPFFLLQGDPADEVPRFAATHGTGLVVTD 118
Query: 128 FSPLREIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEY 187
F LR R ++ ++ +HEVD NVVP +AS+K EY+A+TLR KI++LLPEY
Sbjct: 119 FDVLRLKRAWLGQVHEALA--CPLHEVDGRNVVPCRMASDKREYAARTLRPKIHRLLPEY 176
Query: 188 LIDYPMLE---QPIEKWTG----TRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEV 240
L +P L + W + DWD+++AA VP + +G DA +
Sbjct: 177 LDPFPSLATEASGVAAWKAPVPDAMAAPDWDALLAA-HPADRSVPAL----TGPDAPVPG 231
Query: 241 LKGSK---DGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLC 297
+G++ + FLT R+ Y RN+P A+SGLSPYLHFG ++AQR +
Sbjct: 232 EEGARRTLETFLTSRIHRY-EKRNDP-NADAVSGLSPYLHFGMMAAQRVVQRVTASTAGS 289
Query: 298 PEAIDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFE 357
+A +F+EEL+VRRELADNFC + P+YD++ WA+ +L H D R H+Y + E
Sbjct: 290 ADARASFIEELVVRRELADNFCLHTPDYDAVTCFPAWAQGTLDRHRDDPRPHLYDEAALE 349
Query: 358 KAQTADPV 365
KA+TADP+
Sbjct: 350 KARTADPL 357
>gi|78355226|ref|YP_386675.1| deoxyribodipyrimidine photolyase [Desulfovibrio alaskensis G20]
gi|78217631|gb|ABB36980.1| deoxyribodipyrimidine photolyase [Desulfovibrio alaskensis G20]
Length = 487
Score = 257 bits (657), Expect = 6e-66, Method: Compositional matrix adjust.
Identities = 147/343 (42%), Positives = 201/343 (58%), Gaps = 13/343 (3%)
Query: 29 GPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRL 88
PV+YWM R+ R RDNWAL+HA A P+AV F L QF+ A R FML+GL
Sbjct: 23 APVLYWMHREMRARDNWALLHAQQCAAAGGAPLAVVFCLVPQFIDAGLRHFHFMLQGLEE 82
Query: 89 LQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRR-CKDKICNRVSD 147
R +EE I FL +G + + F + GAS +VTDF LR R+ + +
Sbjct: 83 TARILEE-LGIPLFLLRGTPPEEVVRFAQAHGASRVVTDFDTLRIKRQWIRSAVEAARQL 141
Query: 148 SVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQPIEKWTGTRQS 207
+ + VD+ NVVP AS+K EY+A+T+R KI++LL EYL P L+ W G Q
Sbjct: 142 DIAVDVVDSRNVVPCLRASDKREYAARTIRPKIHRLLDEYLDPLPALQPAAVPWKGAYQR 201
Query: 208 IDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPR 267
DW + + + L+ A V GW GE+AA+ L F+ R+ Y +RNNPL P
Sbjct: 202 PDWQAALDS-LQADASVQPAGWLPPGENAALAELTA----FIRVRMHRYAAERNNPLMP- 255
Query: 268 ALSGLSPYLHFGQISAQRCALEARKARKLCP-----EAIDTFLEELIVRRELADNFCFYQ 322
LS LSPYLHFG +SAQR LE +A+ E F+EEL+VRRELADNFC+Y+
Sbjct: 256 VLSHLSPYLHFGMLSAQRAVLEVMQAQGTAAGGTYGEGAAAFVEELVVRRELADNFCWYE 315
Query: 323 PNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPV 365
P+YDS++ +WA K+L H +D+R ++Y ++Q EKA+T DP+
Sbjct: 316 PSYDSVEAFPDWALKTLDRHRADRRPYLYDEQQLEKARTHDPL 358
>gi|46578529|ref|YP_009337.1| deoxyribodipyrimidine photolyase [Desulfovibrio vulgaris str.
Hildenborough]
gi|46447940|gb|AAS94596.1| deoxyribodipyrimidine photolyase, putative [Desulfovibrio vulgaris
str. Hildenborough]
Length = 474
Score = 257 bits (656), Expect = 7e-66, Method: Compositional matrix adjust.
Identities = 150/365 (41%), Positives = 210/365 (57%), Gaps = 22/365 (6%)
Query: 11 VQPGRIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQ 70
+ PGR V + G RGPV+YWM R+ R DNWAL+HA+ +A P+AV + L +
Sbjct: 1 MHPGR--VWRHGDSRAVRGPVLYWMHREHRAHDNWALVHAIGEAKAAGAPLAVVWCLSPR 58
Query: 71 FLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSP 130
FL A RQ F+LRG+R + E I FFL QG+ D +P F G L+VTDF
Sbjct: 59 FLDAAYRQFHFLLRGMRGTAETLRE-HGIPFFLLQGDPADEVPRFAATHGTGLVVTDFDV 117
Query: 131 LREIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLID 190
LR R ++ R + + +HEVD NVVP +AS+K EY+A+TLR KI++LLPEYL
Sbjct: 118 LRLKRAWLGQV--REALACPLHEVDGRNVVPCRMASDKREYAARTLRPKIHRLLPEYLDP 175
Query: 191 YPMLE---QPIEKWTG----TRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKG 243
+P L + W + DWD+++AA VP + +G DA + +G
Sbjct: 176 FPSLATEASGVAAWKAPVPDAMAAPDWDALLAA-HPADRSVPAL----TGPDAPVPGEEG 230
Query: 244 SK---DGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEA 300
++ + FLT R+ Y RN+P A+SGLSPYLHFG ++AQR + +A
Sbjct: 231 ARRTLETFLTSRIHRY-EKRNDP-NADAVSGLSPYLHFGMMAAQRVVQRVTASTAGSADA 288
Query: 301 IDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQ 360
+F+EEL+VRRELADNFC + P+YD++ WA+ +L H D R H+Y + EKA+
Sbjct: 289 RASFIEELVVRRELADNFCLHTPDYDAVTCFPAWAQGTLDRHRDDPRPHLYDEAALEKAR 348
Query: 361 TADPV 365
TADP+
Sbjct: 349 TADPL 353
>gi|9631430|ref|NP_048306.1| ORF MSV235 putative CPD photolyase, similar to Monodelphis
domestica GB:D31902 [Melanoplus sanguinipes
entomopoxvirus]
gi|4049783|gb|AAC97743.1| ORF MSV235 putative CPD photolyase, similar to Monodelphis
domestica GB:D31902 [Melanoplus sanguinipes
entomopoxvirus]
Length = 466
Score = 256 bits (655), Expect = 9e-66, Method: Compositional matrix adjust.
Identities = 133/347 (38%), Positives = 204/347 (58%), Gaps = 26/347 (7%)
Query: 25 DKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLR 84
+K V+YW RDQR++DNW LI+A + A K+ + + L +FL A RQ FML
Sbjct: 29 NKIYNNVLYWCVRDQRIQDNWGLIYAQELALKSKSSLHMCICLVPEFLNATIRQFDFMLN 88
Query: 85 GLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICNR 144
G++ ++ + I F L G + D +P F+++ +L+ DF P++ +++ ++
Sbjct: 89 GVKQMEEECK-NLNIHFHLLIGISVDVLPKFIKKYNIGVLIVDFYPIKIFNNWVNQLISK 147
Query: 145 VSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDY-PMLEQPIE---- 199
++ + +++VD+HN+VP W+AS KLEYSAKT+R KIN L EYL ++ P+++
Sbjct: 148 IN--IDVYQVDSHNIVPCWIASNKLEYSAKTIRNKINYKLSEYLTEFIPIIKHTYNTYIK 205
Query: 200 ---KWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLKNY 256
W QS++ D V + W +SG A ++L D F+ RLK+Y
Sbjct: 206 INNNWKKAEQSLNIDR----------NVKPVSWAKSGTKYAFKIL----DIFIQNRLKDY 251
Query: 257 PTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVRRELAD 316
RN+P A+S LSP++HFGQIS QR LE K +KL P++++ F EE I+R+EL D
Sbjct: 252 AKKRNDP-NANAISNLSPWIHFGQISTQRIILEINKYKKLYPKSVEVFCEEAIIRKELCD 310
Query: 317 NFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTAD 363
NFC+Y NYD++ GA WA K+L +H +D R+HIY+ Q E A T D
Sbjct: 311 NFCYYNENYDNINGANNWAIKTLNEHKNDTRKHIYSLYQLENALTHD 357
>gi|39997921|ref|NP_953872.1| deoxyribodipyrimidine photo-lyase [Geobacter sulfurreducens PCA]
gi|409913272|ref|YP_006891737.1| deoxyribodipyrimidine photo-lyase [Geobacter sulfurreducens KN400]
gi|39984866|gb|AAR36222.1| deoxyribodipyrimidine photolyase, putative [Geobacter
sulfurreducens PCA]
gi|298506859|gb|ADI85582.1| deoxyribodipyrimidine photolyase, putative [Geobacter
sulfurreducens KN400]
Length = 461
Score = 256 bits (655), Expect = 9e-66, Method: Compositional matrix adjust.
Identities = 157/351 (44%), Positives = 200/351 (56%), Gaps = 12/351 (3%)
Query: 14 GRIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLG 73
GRIR L QG + GPV+YWM RDQRV DNWALIHA A + P+ V F L +FLG
Sbjct: 4 GRIRSLLQGG-EATAGPVIYWMSRDQRVADNWALIHAQKLALARSAPLGVLFCLAPRFLG 62
Query: 74 AKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLRE 133
A ARQ FML+GL ++ + I FFL G+ + + F R S LVTDF PLR
Sbjct: 63 ATARQYRFMLKGLEQVRAALNR-LDIPFFLVTGDPKGAVAAFTRRHRVSYLVTDFDPLRV 121
Query: 134 IRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPM 193
R K ++ + S+ EVDAHN+VP W+ S++ E+ A T+R KI++LLP+++ +P
Sbjct: 122 KREWKRQVAGEI--SIPFDEVDAHNIVPCWITSQRQEWGAYTIRPKIHRLLPDFMEPFPP 179
Query: 194 LEQPIEKWTGTRQS-IDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKR 252
L++ W G S +W + VPE+ W SGE+AA L FL
Sbjct: 180 LQRHPFPWQGALPSDAEWRETFTGMTLD-ESVPEVSWLASGEEAAQAALA----RFLEDG 234
Query: 253 LKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVRR 312
L Y T RNNP SGLSP+LHFGQ+SAQR A A A E+ D FLEELIVRR
Sbjct: 235 LAGYATRRNNPAV-MGQSGLSPWLHFGQLSAQRVAQAAFAAAAPI-ESRDAFLEELIVRR 292
Query: 313 ELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTAD 363
ELADNFC+Y YD G EWA+++L H D R Y + E+ QT D
Sbjct: 293 ELADNFCYYNDAYDRFDGFPEWAQRTLNRHRHDPRPQCYEHDVLEQGQTHD 343
>gi|449268368|gb|EMC79236.1| Deoxyribodipyrimidine photo-lyase, partial [Columba livia]
Length = 436
Score = 256 bits (655), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 142/324 (43%), Positives = 198/324 (61%), Gaps = 9/324 (2%)
Query: 43 DNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQRNIEETFQILFF 102
DNWA ++A A K +P+ V F L +FL A R FML+GL+ + E I F
Sbjct: 1 DNWAFLYAQRLALKQELPLHVCFCLVPKFLDATIRHYDFMLKGLQEVTEECAE-LNIPFH 59
Query: 103 LFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICNRVSDSVTIHEVDAHNVVPV 162
L G +D +P FV E G LVTDFSPLR R+ + I R+ + V +VDAHN+VP
Sbjct: 60 LLLGYPKDVLPAFVVEHGVGGLVTDFSPLRLPRQWVEDIRERLPEDVPFAQVDAHNIVPC 119
Query: 163 WVASEKLEYSAKTLRGKINKLLPEYLIDYP-MLEQPIEKWTGTRQSIDWDSIIAAVLRKG 221
WVAS K EYSA T RGKIN LPE++ ++P ++ P + + I W++ ++ L+
Sbjct: 120 WVASPKQEYSAWTFRGKINSQLPEFITEFPPVICHPYPP-SCPAEPIAWEACYSS-LQVD 177
Query: 222 AEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQI 281
V E+ W G A + VL+ F+ +RLK + + RNNP K ALS LSP+ HFGQ+
Sbjct: 178 RTVKEVEWATPGTAAGLAVLQS----FIAERLKYFGSHRNNPNK-EALSNLSPWFHFGQV 232
Query: 282 SAQRCALEARKARKLCPEAIDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKD 341
S QR LE +K R E++D F+EE +VRRELA+NFC+Y NYDS++GA++WA+ +LK
Sbjct: 233 STQRAILEVQKQRGKYKESVDVFVEEAVVRRELAENFCYYNENYDSVQGAYDWAQTTLKL 292
Query: 342 HASDKREHIYTKEQFEKAQTADPV 365
HA DKR +Y ++ E+ T DP+
Sbjct: 293 HAEDKRPFLYKLQELEQGTTHDPL 316
>gi|428177800|gb|EKX46678.1| hypothetical protein GUITHDRAFT_162898 [Guillardia theta CCMP2712]
Length = 505
Score = 254 bits (649), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 143/356 (40%), Positives = 208/356 (58%), Gaps = 44/356 (12%)
Query: 10 AVQPGRIRVLKQGSLDK--KRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNL 67
AV P R R + +++ K PVVYWM RDQRV+DNWA+++A QA + P+AV FNL
Sbjct: 119 AVLPERTRAINHKNVESCPKGKPVVYWMSRDQRVQDNWAMLYAQQQALEAGAPLAVCFNL 178
Query: 68 FDQFLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTD 127
D FLGA RQ GFMLRGL+ ++ ++E I FFL +G+ IP FV++ L
Sbjct: 179 VDSFLGAGLRQFGFMLRGLKEVEEELKEL-NIPFFLLRGDCVKTIPKFVKDNNVGL---- 233
Query: 128 FSPLREIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEY 187
VVPVWVAS+K E A+TLR KI++LLP++
Sbjct: 234 -------------------------------VVPVWVASDKQEVGARTLRPKIHRLLPKF 262
Query: 188 LIDYPMLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDG 247
++P + W + D+++ + + L+ +PE+ W + G A +E L
Sbjct: 263 HQNFPAVMSHPHPWKTSPPPTDFEAALKS-LKCDESIPEVTWAKPGSAAGLENL----SK 317
Query: 248 FLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEE 307
FL ++ KN+ T RN+P + LS +SP+LHFGQ++ RCALEA+ K+ E+ +++EE
Sbjct: 318 FLMQKFKNFNTKRNDPSE-EVLSDMSPWLHFGQVAPARCALEAKSFSKMHSESYASYIEE 376
Query: 308 LIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTAD 363
L+VRREL+DNFC Y YDSL+G WA+++LK HA DKR H+Y+ + E+A+T D
Sbjct: 377 LVVRRELSDNFCHYNKKYDSLEGCAGWAQETLKVHAGDKRPHVYSLAKLEEAKTHD 432
>gi|195026713|ref|XP_001986318.1| GH21292 [Drosophila grimshawi]
gi|193902318|gb|EDW01185.1| GH21292 [Drosophila grimshawi]
Length = 530
Score = 254 bits (648), Expect = 6e-65, Method: Compositional matrix adjust.
Identities = 150/358 (41%), Positives = 214/358 (59%), Gaps = 13/358 (3%)
Query: 10 AVQPGRIRVLKQGSLDKK--RGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNL 67
A + R+ VL + K+ +G VVYWM RD RV+DNWAL+ A A K +P++V F L
Sbjct: 68 AFRKRRVHVLSNAADVKEQCKGGVVYWMSRDARVQDNWALLFAQRLALKLELPLSVVFCL 127
Query: 68 FDQFLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFV--RECGASLLV 125
+FL A R FML GL+ +++ + I F L G A + +P FV E GA +V
Sbjct: 128 VPKFLNATLRHYMFMLGGLQEVEQQCRD-LNISFQLLLGPAVERLPAFVVAEEIGA--VV 184
Query: 126 TDFSPLREIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLP 185
DF+PLR R+ + + +V + +VDAHN+VP+WV SEK EY+A+T+R KIN L
Sbjct: 185 CDFAPLRLPRQWVTDVVKALPRNVPLTQVDAHNIVPLWVTSEKQEYAARTIRNKINSKLS 244
Query: 186 EYLIDYPMLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSK 245
EYL ++P + + + +DW + A+L V + W + G A L
Sbjct: 245 EYLTEFPPVIKHPHGNGQKDKPVDW-AAAEALLTCDRSVDVVDWAKPGYTAGSRQLYE-- 301
Query: 246 DGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFL 305
F T+RL+ + RN+P ALSGLSP+LHFGQISAQRCALE ++ + + D F
Sbjct: 302 --FCTRRLRYFDEKRNDPTAD-ALSGLSPWLHFGQISAQRCALEVQRYTSMHKASADAFC 358
Query: 306 EELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTAD 363
EE IVRRELADNFC+Y +YDSLKG +WA ++L++H +D+R Y+ E+ E+++T D
Sbjct: 359 EEAIVRRELADNFCYYNEHYDSLKGLHDWAYQTLQEHRTDERNPCYSLEELEQSRTYD 416
>gi|383862709|ref|XP_003706826.1| PREDICTED: deoxyribodipyrimidine photo-lyase-like [Megachile
rotundata]
Length = 477
Score = 253 bits (647), Expect = 7e-65, Method: Compositional matrix adjust.
Identities = 133/349 (38%), Positives = 207/349 (59%), Gaps = 7/349 (2%)
Query: 15 RIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGA 74
R+R+L + + K ++YWMFRD RV+DNWAL+ A A KNNVP+ + F + FL A
Sbjct: 25 RVRLLSELNDVKDCKGILYWMFRDIRVQDNWALLFAQRTALKNNVPLHICFCIMPSFLYA 84
Query: 75 KARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREI 134
R F+L+GL ++ + I F L GE +I FV+ ++ DF+PLR
Sbjct: 85 SIRYYKFLLKGLMKVEEECK-NLNINFHLLNGEPNMSILKFVKAHRMGAVIADFNPLRLP 143
Query: 135 RRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPML 194
+ + + + + +VDAHN+VP W+AS K EY+A+T+R KIN L E+L ++P +
Sbjct: 144 MSWINDLQKDLPEYIPFCQVDAHNIVPCWIASSKQEYAARTIRSKINTKLEEFLTEFPPV 203
Query: 195 EQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLK 254
+ K + +W+ + + V EI W + G + ++ L + FL +K
Sbjct: 204 IKHPHKIKSKIEGNNWEKALQNI-SVDMSVDEITWAKPGYEYGVKAL----ENFLQNGIK 258
Query: 255 NYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVRREL 314
Y T+RN+PL ALS LSP+ HFG IS QRC LE + +K+ P+++++F+EE I+RREL
Sbjct: 259 KYATERNDPL-ANALSNLSPWFHFGMISVQRCILEITEYKKIHPKSVESFMEEAIIRREL 317
Query: 315 ADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTAD 363
+DNFCFY YD ++GA+ W ++L H DKR+++Y+ +Q E ++T D
Sbjct: 318 SDNFCFYNKKYDLIEGAYPWTIETLDKHRKDKRKYLYSLDQLENSETHD 366
>gi|328784628|ref|XP_003250474.1| PREDICTED: deoxyribodipyrimidine photo-lyase [Apis mellifera]
Length = 480
Score = 253 bits (646), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 133/336 (39%), Positives = 202/336 (60%), Gaps = 13/336 (3%)
Query: 31 VVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQ 90
++YWMFRD R++DNWAL+ A A KNNVP+ + F L FL A R F+L+GL ++
Sbjct: 42 ILYWMFRDIRIQDNWALLFAQKAALKNNVPLHICFCLISNFLNASIRYYKFLLKGLEEIE 101
Query: 91 RNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICNRVSDSVT 150
+ ++ I F L GE NI F++ ++TDF PL+ D + + +
Sbjct: 102 KECKK-LNINFHLLHGEPNINILKFIKIYNMGAIITDFYPLKLPMLWIDNVKKNLPKDIP 160
Query: 151 IHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYP-MLEQPIEKWTGTRQSID 209
I +VDAHN+VP W AS K E++AKT+R KIN L E+L ++P +++ P T++ +
Sbjct: 161 ICQVDAHNIVPCWYASSKQEFAAKTIRNKINTKLEEFLTEFPPVIKHP----YTTKEKFE 216
Query: 210 WDSIIAAV--LRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPR 267
++ A+ + V EI W + G + ++ L + FL RLK Y +RNNPL
Sbjct: 217 KNNWKIALQNVEVDKSVKEITWAKPGYENGIKEL----ENFLQNRLKKYGDERNNPL-SN 271
Query: 268 ALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVRRELADNFCFYQPNYDS 327
A+S LSP+ HFG IS QRC LE ++ +KL +++++F+EE I+R+EL+DNFCFY YD
Sbjct: 272 AISNLSPWFHFGMISVQRCILEIKEYKKLYKKSVESFMEEAIIRKELSDNFCFYNEKYDL 331
Query: 328 LKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTAD 363
++GA+ WA ++L H DKR++IY E ++T D
Sbjct: 332 IEGAYPWAIETLNKHRKDKRKYIYFLNHLENSETHD 367
>gi|330506500|ref|YP_004382928.1| deoxyribodipyrimidine photo-lyase [Methanosaeta concilii GP6]
gi|328927308|gb|AEB67110.1| deoxyribodipyrimidine photo-lyase (DNA
photolyase)(Photoreactivating enzyme) [Methanosaeta
concilii GP6]
Length = 445
Score = 252 bits (644), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 147/353 (41%), Positives = 212/353 (60%), Gaps = 17/353 (4%)
Query: 11 VQPGRIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQ 70
V P R RVL +++G V YWM R+QRV DNW L+ A + A + P+AV F + Q
Sbjct: 3 VNPKRARVLVWAK--ERKGAVFYWMSREQRVADNWPLLFAQELAIREKSPLAVLFCISPQ 60
Query: 71 FLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSP 130
FL A + Q FML+GL ++ ++ E I +L G+ IP F++ A +LV+DFSP
Sbjct: 61 FLEATSSQYKFMLKGLEEVETDLAE-LNIPLYLLSGDPAKEIPQFLQSHEAGILVSDFSP 119
Query: 131 LREIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLID 190
LR + I V+ + +EVD HN+VP W AS K E++A + R KI++LL EYL D
Sbjct: 120 LRIKMIWQRSIAKEVN--IPCYEVDGHNIVPCWQASLKQEWAAYSFRPKIHRLLDEYLTD 177
Query: 191 YPMLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLT 250
+P L+ W +++D D A + + + ++ W + GE AA + L + F+
Sbjct: 178 FPALKAHPFPWP---EAVDNDWRGAEMAIRADHISDMSWAQPGERAAKKHL----NEFID 230
Query: 251 KRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIV 310
+ L Y +DRNNP+K SGLS YLHFGQISAQR AL A FLEEL+V
Sbjct: 231 QGLVLYDSDRNNPVK-NGQSGLSFYLHFGQISAQRVALMALSGMTDS----SPFLEELVV 285
Query: 311 RRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTAD 363
RRELADNFC+Y P+YDS++G WA+++L+ H +D RE++Y+ ++ E+A+T D
Sbjct: 286 RRELADNFCYYNPHYDSVQGFPNWAQETLRQHENDPREYLYSIKELEEAKTND 338
>gi|346651880|pdb|2XRY|A Chain A, X-Ray Structure Of Archaeal Class Ii Cpd Photolyase From
Methanosarcina Mazei
gi|346651881|pdb|2XRZ|A Chain A, X-Ray Structure Of Archaeal Class Ii Cpd Photolyase From
Methanosarcina Mazei In Complex With Intact Cpd-Lesion
gi|346651882|pdb|2XRZ|B Chain B, X-Ray Structure Of Archaeal Class Ii Cpd Photolyase From
Methanosarcina Mazei In Complex With Intact Cpd-Lesion
Length = 482
Score = 251 bits (642), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 155/380 (40%), Positives = 213/380 (56%), Gaps = 32/380 (8%)
Query: 3 SLTPPSTAVQPGRIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVA 62
L P + + P RIR LK G + GPVVYWM RDQR DNWAL+ + A + NVPV
Sbjct: 13 GLVPRGSHMNPKRIRALKSGK--QGDGPVVYWMSRDQRAEDNWALLFSRAIAKEANVPVV 70
Query: 63 VAFNLFDQFLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGAS 122
V F L D+FL A RQ FML+GL+ L+ ++ +I F +G+ + I FV++ A
Sbjct: 71 VVFCLTDEFLEAGIRQYEFMLKGLQELEVSLSRK-KIPSFFLRGDPGEKISRFVKDYNAG 129
Query: 123 LLVTDFSPLREIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKI-- 180
LVTDFSPLR + +K+ + +S + EVDAHNVVP W AS+K EY+A T R K+
Sbjct: 130 TLVTDFSPLRIKNQWIEKVISGIS--IPFFEVDAHNVVPCWEASQKHEYAAHTFRPKLYA 187
Query: 181 --------------NKLLPEYLIDYPMLEQPIEKW-TGTRQSIDWDSIIAAVLRKGAEVP 225
N + PE M+E + TG + + A+L+ +
Sbjct: 188 LLPEFLEEFPELEPNSVTPELSAGAGMVETLSDVLETGVKALLP----ERALLKNKDPLF 243
Query: 226 EIGWCESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQR 285
E E GE AA +V+ + F+ RL +Y RN+P K LS LSPYLHFGQIS+QR
Sbjct: 244 EPWHFEPGEKAAKKVM----ESFIADRLDSYGALRNDPTK-NMLSNLSPYLHFGQISSQR 298
Query: 286 CALEARKARKLCPEAIDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASD 345
LE KA P + FL+E+++ +E++DNFC+Y P YD + WA++SL H +D
Sbjct: 299 VVLEVEKAES-NPGSKKAFLDEILIWKEISDNFCYYNPGYDGFESFPSWAKESLNAHRND 357
Query: 346 KREHIYTKEQFEKAQTADPV 365
R HIYT E+FE +T DP+
Sbjct: 358 VRSHIYTLEEFEAGKTHDPL 377
>gi|242278435|ref|YP_002990564.1| deoxyribodipyrimidine photolyase [Desulfovibrio salexigens DSM
2638]
gi|242121329|gb|ACS79025.1| deoxyribodipyrimidine photolyase [Desulfovibrio salexigens DSM
2638]
Length = 445
Score = 250 bits (639), Expect = 7e-64, Method: Compositional matrix adjust.
Identities = 142/353 (40%), Positives = 207/353 (58%), Gaps = 30/353 (8%)
Query: 17 RVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKA 76
R+ K S + GP+VYWM R+QRV DNW L+HA + A + VP+ V F L FLGA
Sbjct: 8 RIKKLNSAEISGGPIVYWMSREQRVFDNWGLLHARELAG-DKVPLIVVFCLVPSFLGATL 66
Query: 77 RQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRR 136
R FML G++ +++++ + F L G+ ++ +P FV A +VTDF PLR ++
Sbjct: 67 RHYDFMLNGMQQVEKDLRK-LGYDFVLLSGQPDETLPAFVSNIRAGAVVTDFDPLRIKQQ 125
Query: 137 CKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQ 196
++ + ++ + + EVD HN+VP ++K EY A+T+R KI +LLPE+L ++P L
Sbjct: 126 WQENVGQKID--IPLLEVDGHNIVPARFVTDKREYGARTIRPKIQRLLPEFLEEFPELAS 183
Query: 197 --------PIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGF 248
P+ W R SI D + V +P GE AA L D F
Sbjct: 184 AEVKGEGFPVVDWKQVRSSIKVDETVGPV----DLIP-------GESAAHAAL----DEF 228
Query: 249 LTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEEL 308
+T L Y RN+P A S LS Y HFGQ++ QR ALE A + E++D++LEEL
Sbjct: 229 VTYGLGAYAEKRNDP-NAEATSRLSAYYHFGQLAPQRAALEV--AARPTGESVDSYLEEL 285
Query: 309 IVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQT 361
I+RREL+DNFC + PNYDSL A EWA+K+L +H++D+R ++Y+ E FE+A+T
Sbjct: 286 IIRRELSDNFCLHTPNYDSLDAAPEWAQKTLSEHSADRRAYLYSYEDFEQART 338
>gi|358337824|dbj|GAA56147.1| deoxyribodipyrimidine photo-lyase, partial [Clonorchis sinensis]
Length = 893
Score = 250 bits (638), Expect = 9e-64, Method: Compositional matrix adjust.
Identities = 141/364 (38%), Positives = 205/364 (56%), Gaps = 36/364 (9%)
Query: 29 GPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRL 88
G V+YWM RDQRV+DNWA ++A A K VP+ F + +F A R F++ GL
Sbjct: 431 GGVLYWMNRDQRVQDNWAFLYAQRLALKFEVPLHACFCMVPRFQAATLRHFTFLVDGLAE 490
Query: 89 LQRNIEETFQILFFL---------------------------FQGEAEDNIPNFVRECGA 121
+++ QI F L F+G + + N V+
Sbjct: 491 VEKEC-CALQIPFHLVLTDSPSSKIPTGNKRSYAAVEESDDFFEGTVAETVVNLVQRLRI 549
Query: 122 SLLVTDFSPLREIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKIN 181
+VTDF PLRE ++ + D++ +VDAHNV+P+W AS+KLEY+A+T+R K++
Sbjct: 550 GCVVTDFCPLREPSAWVERTSRLLPDTIPFCQVDAHNVIPIWFASDKLEYAARTIRRKLH 609
Query: 182 KLLPEYLIDYPML-EQPIEKWTGT-RQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAME 239
+ L ++P+L P + + QS++W+ + + L V + W + G M+
Sbjct: 610 EKATGLLTEFPVLTTHPYPTNSKSLAQSVNWED-LKSRLDVDHSVKPVDWAKGGTRIGMQ 668
Query: 240 VLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPE 299
L F+TKRLK Y T RN+P K ALS LSP+ HFG I+ QR LE ++ R P+
Sbjct: 669 TLF----DFITKRLKAYATQRNDPTKD-ALSDLSPWFHFGHIAPQRALLEVQRVRTKDPK 723
Query: 300 AIDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKA 359
++D F+EE +RREL+DNFCFY PNYDSLKGA++WA+ +LK H+ DKR+ YT +Q E A
Sbjct: 724 SVDAFIEEAFIRRELSDNFCFYNPNYDSLKGAYQWAQDTLKCHSKDKRDPAYTSKQLEAA 783
Query: 360 QTAD 363
QT D
Sbjct: 784 QTKD 787
>gi|289740223|gb|ADD18859.1| photolyase [Glossina morsitans morsitans]
Length = 510
Score = 250 bits (638), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 139/353 (39%), Positives = 210/353 (59%), Gaps = 12/353 (3%)
Query: 15 RIRVLKQGSLDKK---RGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQF 71
R+R+L + + + +GPVVYWM+RDQRV+DNWA ++A A K +P+ V F L ++
Sbjct: 54 RVRILTENQCEVREDCQGPVVYWMYRDQRVQDNWAFLYAQRLALKLELPLCVCFCLLPKY 113
Query: 72 LGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPL 131
+ R FML GL + E+ + F L +G A ++ F+++ A+ +V DFSPL
Sbjct: 114 IHTTLRHYKFMLTGLEEVSEECED-LNVSFHLLKGPAHQSLVEFLKDVDAATVVCDFSPL 172
Query: 132 REIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDY 191
R + ++I + ++ ++DAHNVVPVW AS+K EY+A+T+R KIN L EYL ++
Sbjct: 173 RLPLQWLEEIKEVLPTTIPFIQIDAHNVVPVWFASQKQEYAARTIRNKINSQLEEYLTEF 232
Query: 192 PMLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESG-EDAAMEVLKGSKDGFLT 250
P L + ++W S+ L+ V E+ + G ++A ++L+ F
Sbjct: 233 PPLIRHKYPNRKPSTKVNWKSVYN-TLKCLKTVDEVASVKPGYKNACHQLLE-----FCQ 286
Query: 251 KRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIV 310
RLK + RN+P ALSGLSP+ +FGQIS QRC LE + +++ F EE IV
Sbjct: 287 NRLKLFHDKRNDP-NIDALSGLSPWFNFGQISIQRCILEIKTYEHKFKDSVAAFCEEAIV 345
Query: 311 RRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTAD 363
RRELADNFCFY NYD+ +G +W+RK+L +H D+R Y+ E+FE+A+T D
Sbjct: 346 RRELADNFCFYNQNYDNFQGLQDWSRKTLNEHRKDERSPCYSLEEFEQARTHD 398
>gi|380029742|ref|XP_003698524.1| PREDICTED: deoxyribodipyrimidine photo-lyase-like [Apis florea]
Length = 480
Score = 249 bits (636), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 132/336 (39%), Positives = 201/336 (59%), Gaps = 13/336 (3%)
Query: 31 VVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQ 90
++YWMFRD R++DNWAL+ A A KNNVP+ + F + FL A R F+L+GL ++
Sbjct: 42 ILYWMFRDIRIQDNWALLFAQKAALKNNVPLHICFCIMSNFLNASIRYYKFLLKGLEEIE 101
Query: 91 RNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICNRVSDSVT 150
++ I F L GE +I F++ ++TDF PL+ D + + + V
Sbjct: 102 TECKK-LNINFHLLHGEPNISILKFIKMYNMGAIITDFYPLKLPMLWIDNVKKNLPEDVP 160
Query: 151 IHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYP-MLEQPIEKWTGTRQSID 209
I +VDAHN+VP W AS K E++AKT+R KIN L E+L ++P +++ P T++ +
Sbjct: 161 ICQVDAHNIVPCWYASSKQEFAAKTIRNKINTKLEEFLTEFPPVIKHPY----TTKEKFE 216
Query: 210 WDSIIAAV--LRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPR 267
++ A+ + V EI W + G ++ L + FL RLK Y +RNNPL
Sbjct: 217 KNNWKIALQNVEVDKSVKEITWAKPGYRNGIKEL----ENFLQNRLKKYGDERNNPL-SN 271
Query: 268 ALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVRRELADNFCFYQPNYDS 327
A+S LSP+ HFG IS QRC LE ++ +KL +++++F+EE I+R+EL+DNFCFY YD
Sbjct: 272 AISNLSPWFHFGMISVQRCILEIKEYKKLYKKSVESFMEEAIIRKELSDNFCFYNEKYDL 331
Query: 328 LKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTAD 363
++GA+ WA ++L H DKR++IY E ++T D
Sbjct: 332 IEGAYPWAIETLNKHRKDKRKYIYFLNHLENSETHD 367
>gi|40556144|ref|NP_955229.1| CNPV206 putative photolyase [Canarypox virus]
gi|40233969|gb|AAR83552.1| CNPV206 putative photolyase [Canarypox virus]
Length = 472
Score = 249 bits (636), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 131/339 (38%), Positives = 196/339 (57%), Gaps = 20/339 (5%)
Query: 31 VVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQ 90
V+YWM RDQR++DNWALI+A A +P+ + F + F +R F+L GL+ +
Sbjct: 30 VLYWMVRDQRIQDNWALIYAQRIALHLKIPLRICFCIVPGFHTTTSRHFSFLLDGLKEIA 89
Query: 91 RNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICNRVSDSVT 150
+ I F G IP+ +++ +++TDF PLR + ++ + + D V
Sbjct: 90 EECIK-LSIGFNAVYGLPNVLIPSIIKKYKVGVVITDFFPLRVPEKLIKQVTSVLPDKVV 148
Query: 151 IHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQ----PIEKWTGTRQ 206
+VDAHN+VP W AS K EY A+TLR KIN +L YL ++P++ + P +
Sbjct: 149 FIQVDAHNIVPCWEASHKQEYGARTLRKKINGMLDTYLTEFPVITKHPYGPFSVSIANNK 208
Query: 207 SIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKP 266
+++D + V W G AA +VL D FL RL Y +D NNP
Sbjct: 209 GVEFDDTVHPV----------SWAVPGSKAAFKVL----DDFLKNRLAAYESDHNNP-TC 253
Query: 267 RALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVRRELADNFCFYQPNYD 326
ALS LSP+LHFG ISAQR LE K + + P+++ FL+E+I+RRELADNFC+Y YD
Sbjct: 254 EALSNLSPWLHFGHISAQRVVLETLKYKSIHPKSVSVFLDEIIIRRELADNFCYYNKRYD 313
Query: 327 SLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPV 365
S++ WAR++L+ H +D+R++IY+ +Q E+A+T DP+
Sbjct: 314 SIESTHSWARETLEAHVNDRRKYIYSLKQLERAETHDPL 352
>gi|21226954|ref|NP_632876.1| deoxyribodipyrimidine photolyase [Methanosarcina mazei Go1]
gi|20905266|gb|AAM30548.1| Deoxyribodipyrimidine photolyase [Methanosarcina mazei Go1]
Length = 464
Score = 247 bits (631), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 153/372 (41%), Positives = 210/372 (56%), Gaps = 32/372 (8%)
Query: 11 VQPGRIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQ 70
+ P RIR LK G + GPVVYWM RDQR DNWAL+ + A + NVPV V F L D+
Sbjct: 3 MNPKRIRALKSGK--QGDGPVVYWMSRDQRAEDNWALLFSRAIAKEANVPVVVVFCLTDE 60
Query: 71 FLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSP 130
FL A RQ FML+GL+ L+ ++ +I F +G+ + I FV++ A LVTDFSP
Sbjct: 61 FLEAGIRQYEFMLKGLQELEVSLSRK-KIPSFFLRGDPGEKISRFVKDYNAGTLVTDFSP 119
Query: 131 LREIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKI---------- 180
LR + +K+ + +S + EVDAHNVVP W AS+K EY+A T R K+
Sbjct: 120 LRIKNQWIEKVISGIS--IPFFEVDAHNVVPCWEASQKHEYAAHTFRPKLYALLPEFLEE 177
Query: 181 ------NKLLPEYLIDYPMLEQPIEKW-TGTRQSIDWDSIIAAVLRKGAEVPEIGWCESG 233
N + PE M+E + TG + + A+L+ + E E G
Sbjct: 178 FPELEPNSVTPELSAGAGMVETLSDVLETGVKALLP----ERALLKNKDPLFEPWHFEPG 233
Query: 234 EDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKA 293
E AA +V+ + F+ RL +Y RN+P K LS LSPYLHFGQIS+QR LE KA
Sbjct: 234 EKAAKKVM----ESFIADRLDSYGALRNDPTK-NMLSNLSPYLHFGQISSQRVVLEVEKA 288
Query: 294 RKLCPEAIDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTK 353
P + FL+E+++ +E++DNFC+Y P YD + WA++SL H +D R HIYT
Sbjct: 289 ES-NPGSKKAFLDEILIWKEISDNFCYYNPGYDGFESFPSWAKESLNAHRNDVRSHIYTL 347
Query: 354 EQFEKAQTADPV 365
E+FE +T DP+
Sbjct: 348 EEFEAGKTHDPL 359
>gi|51246428|ref|YP_066312.1| DNA photolyase [Desulfotalea psychrophila LSv54]
gi|50877465|emb|CAG37305.1| probable DNA photolyase [Desulfotalea psychrophila LSv54]
Length = 458
Score = 246 bits (628), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 149/352 (42%), Positives = 203/352 (57%), Gaps = 19/352 (5%)
Query: 15 RIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGA 74
R R LK G + GPVVYW+ RDQRVRDNWAL+ A +A + V F L +LGA
Sbjct: 13 RGRRLKNGR--RGDGPVVYWVSRDQRVRDNWALLWAQQEAISRQKGLLVVFCLVPDYLGA 70
Query: 75 KARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREI 134
K+ Q FMLRGL +Q+ + E I F LF+ +D +P F+R+ A LLV+DF PLR
Sbjct: 71 KSSQYLFMLRGLARMQKKLHE-MNIHFTLFEQSPDDILPGFLRQIDAHLLVSDFDPLRIK 129
Query: 135 RRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPML 194
R+ +++ +V I++VD HN++P W+ S+K EY+A T+R KI +LL ++L D P L
Sbjct: 130 RQWTEQLIAQVV--TPIYQVDTHNIIPAWMVSDKKEYAAYTIRPKIKRLLDDFLTDIPPL 187
Query: 195 EQPIEKWTGT---RQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTK 251
+ W T S +I+ + G E+ +GE +A + + D F+
Sbjct: 188 QHHPFSWAHTLALAGSSSLARVISTLNSSGCELRG-----AGEASA----QFAADSFIKI 238
Query: 252 RLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVR 311
L+NY RNNP SGLSPYLHFG +SAQR A + KL E + FLEELIVR
Sbjct: 239 GLENYSERRNNPCL-NGQSGLSPYLHFGHLSAQRLAWVVSRD-KLPIETKEPFLEELIVR 296
Query: 312 RELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTAD 363
REL+DNFC Y+P YD+ G WARKSL H D+R ++Y+ E T +
Sbjct: 297 RELSDNFCLYEPLYDTFAGFPAWARKSLDQHRCDERAYLYSFHDLEAGNTHE 348
>gi|320355418|ref|YP_004196757.1| Deoxyribodipyrimidine photo-lyase type II [Desulfobulbus
propionicus DSM 2032]
gi|320123920|gb|ADW19466.1| Deoxyribodipyrimidine photo-lyase type II [Desulfobulbus
propionicus DSM 2032]
Length = 451
Score = 246 bits (627), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 142/345 (41%), Positives = 194/345 (56%), Gaps = 11/345 (3%)
Query: 21 QGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLG 80
G GPV+YWM R R RDNWAL+HA QA VP+AVAF L FL A RQ
Sbjct: 2 HGGAVHTSGPVLYWMHRAFRSRDNWALLHAAQQARYLGVPLAVAFCLAPTFLDATLRQYD 61
Query: 81 FMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDK 140
F L GL R++ E I L G+ + + E +L+ TDF PLR R+
Sbjct: 62 FFLNGLEETARSLAEA-NIPLILRSGDPAEEMVRLCTELTPALVATDFDPLRVKRQWLRT 120
Query: 141 ICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQPIEK 200
+ V +HEVD+ N+VP W+AS++ E+ AKT R +I++ L ++L P L+
Sbjct: 121 VTGHVR--CPVHEVDSRNIVPAWIASDRREFMAKTFRPRIHRHLQDFLTVVPPLQPHPHA 178
Query: 201 WTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLKNYPTDR 260
W S+D+ ++ A LR V + W SGE AA + L D FL +RL Y R
Sbjct: 179 WPTLPGSLDFPAL-RARLRVDRSVQPVSWPRSGEAAAWDTL----DTFLRERLAGY-GQR 232
Query: 261 NNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVRRELADNFCF 320
N+P + S LSP+LHFG IS+ LE + R L E +D+F+EEL+VRRELADNFC
Sbjct: 233 NDPNQ-SVCSNLSPFLHFGMISSHAIVLEIGR-RGLHGEVVDSFIEELVVRRELADNFCL 290
Query: 321 YQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPV 365
+ P+YD + G EWA+++L H D R ++Y QF++AQT DP+
Sbjct: 291 HTPDYDQISGFPEWAQRTLARHRHDPRPYVYDDAQFDRAQTHDPL 335
>gi|9634828|ref|NP_039121.1| Photolyase [Fowlpox virus]
gi|7271656|gb|AAF44502.1|AF198100_149 ORF FPV158 Photolyase [Fowlpox virus]
gi|8926140|gb|AAF81696.1|AF246697_1 CPD-photolyase [Fowlpox virus]
Length = 464
Score = 246 bits (627), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 136/346 (39%), Positives = 201/346 (58%), Gaps = 20/346 (5%)
Query: 24 LDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFML 83
++K V+YWMFRDQRV+DNWALI+A A K +P+ + F + +F +R F++
Sbjct: 32 INKNSKVVLYWMFRDQRVQDNWALIYAQRLALKLKIPLRICFCVVPKFHTTTSRHFMFLI 91
Query: 84 RGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICN 143
GL+ + + I F L G + IP V++ +++TDF PLR R +
Sbjct: 92 SGLKEVAEECKR-LCIGFSLIYGVPKVIIPCIVKKYRVGVIITDFFPLRVPERLMKQTVI 150
Query: 144 RVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQ----PIE 199
+ D++ +VDAHN+VP W AS+K EY A+TLR KI L EY+ ++P++ + P
Sbjct: 151 SLPDNIPFIQVDAHNIVPCWEASDKEEYGARTLRKKIFDKLYEYMTEFPVVRKHPYGPFS 210
Query: 200 KWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLKNYPTD 259
++I D + V W G A + VLK F+ RL +Y D
Sbjct: 211 ISIAKPKNISLDKTVLPV----------KWATPGTKAGIIVLKE----FIKNRLPSYDAD 256
Query: 260 RNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVRRELADNFC 319
NNP ALS LSP+LHFG +SAQR ALE K + + ++TF++E+IVRREL+DNFC
Sbjct: 257 HNNP-TCDALSNLSPWLHFGHVSAQRVALEVLKCIRESKKNVETFIDEIIVRRELSDNFC 315
Query: 320 FYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPV 365
+Y +YDS++ WARK+L+DH +D R++IY+ +Q EKA+T DP+
Sbjct: 316 YYNKHYDSIQSTHSWARKTLEDHINDPRKYIYSIKQLEKAETHDPL 361
>gi|340719305|ref|XP_003398095.1| PREDICTED: deoxyribodipyrimidine photo-lyase-like isoform 2 [Bombus
terrestris]
Length = 480
Score = 245 bits (626), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 133/354 (37%), Positives = 206/354 (58%), Gaps = 16/354 (4%)
Query: 15 RIRVL-KQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLG 73
RI+ L K + +K ++YWMFRD R +DNWAL+ A A ++NVP+ + F + FL
Sbjct: 25 RIQYLSKLNDVKEKCKGILYWMFRDIRTQDNWALLFAQKIAVESNVPLHICFCIMPSFLN 84
Query: 74 AKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLRE 133
A R F+L+GL +++ ++ + F L GE ++I FV+ ++ DF PL+
Sbjct: 85 ASMRYYKFLLKGLMEIEKECKQ-LNLNFHLLHGEPNESILKFVKTYNMGAVIVDFYPLKL 143
Query: 134 IRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYP- 192
D + + + V I+++DAHN+VP W AS K E++AKT+R KIN L E+L ++P
Sbjct: 144 PMSWIDNVQKNLPEDVPIYQIDAHNIVPCWYASSKQEFAAKTIRNKINTKLQEFLTEFPP 203
Query: 193 MLEQPI---EKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFL 249
+++ P EK+ +WD + V EI W + G ++ L + F+
Sbjct: 204 VIKHPYLTKEKFENN----NWDITLQDV-EASKPTAEITWAKPGYRNGIKEL----ENFI 254
Query: 250 TKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELI 309
L+ Y + NNPL A+S LSP+ HFG IS QRC LE R+ + L +++++F+EE I
Sbjct: 255 QNHLQKYGDEHNNPLS-NAISNLSPWFHFGMISVQRCILEIREYKGLYKKSVESFMEEAI 313
Query: 310 VRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTAD 363
+RREL+DNFCFY YD ++GA+ WA K+L H D R++IY+ Q E ++T D
Sbjct: 314 IRRELSDNFCFYNEKYDLVEGAYPWAIKTLNKHRKDTRKYIYSLSQLENSKTHD 367
>gi|340719303|ref|XP_003398094.1| PREDICTED: deoxyribodipyrimidine photo-lyase-like isoform 1 [Bombus
terrestris]
Length = 494
Score = 245 bits (626), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 133/354 (37%), Positives = 206/354 (58%), Gaps = 16/354 (4%)
Query: 15 RIRVL-KQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLG 73
RI+ L K + +K ++YWMFRD R +DNWAL+ A A ++NVP+ + F + FL
Sbjct: 39 RIQYLSKLNDVKEKCKGILYWMFRDIRTQDNWALLFAQKIAVESNVPLHICFCIMPSFLN 98
Query: 74 AKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLRE 133
A R F+L+GL +++ ++ + F L GE ++I FV+ ++ DF PL+
Sbjct: 99 ASMRYYKFLLKGLMEIEKECKQ-LNLNFHLLHGEPNESILKFVKTYNMGAVIVDFYPLKL 157
Query: 134 IRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYP- 192
D + + + V I+++DAHN+VP W AS K E++AKT+R KIN L E+L ++P
Sbjct: 158 PMSWIDNVQKNLPEDVPIYQIDAHNIVPCWYASSKQEFAAKTIRNKINTKLQEFLTEFPP 217
Query: 193 MLEQPI---EKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFL 249
+++ P EK+ +WD + V EI W + G ++ L + F+
Sbjct: 218 VIKHPYLTKEKFENN----NWDITLQDV-EASKPTAEITWAKPGYRNGIKEL----ENFI 268
Query: 250 TKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELI 309
L+ Y + NNPL A+S LSP+ HFG IS QRC LE R+ + L +++++F+EE I
Sbjct: 269 QNHLQKYGDEHNNPLS-NAISNLSPWFHFGMISVQRCILEIREYKGLYKKSVESFMEEAI 327
Query: 310 VRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTAD 363
+RREL+DNFCFY YD ++GA+ WA K+L H D R++IY+ Q E ++T D
Sbjct: 328 IRRELSDNFCFYNEKYDLVEGAYPWAIKTLNKHRKDTRKYIYSLSQLENSKTHD 381
>gi|20092859|ref|NP_618934.1| deoxyribodipyrimidine photolyase [Methanosarcina acetivorans C2A]
gi|19918164|gb|AAM07414.1| deoxyribodipyrimidine photolyase [Methanosarcina acetivorans C2A]
Length = 462
Score = 245 bits (626), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 163/370 (44%), Positives = 213/370 (57%), Gaps = 28/370 (7%)
Query: 11 VQPGRIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQ 70
+ P RIR LK G G V YWM RDQRV DNWAL+ A A + NVPV V F L +
Sbjct: 1 MNPKRIRTLKPGK--SGDGSVAYWMSRDQRVEDNWALLFAQVIAQEANVPVVVVFCLIEG 58
Query: 71 FLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSP 130
FLGA R FML+GL+ L+ + +I F+ +G+ IP FV+E L+TDFSP
Sbjct: 59 FLGAGRRHYEFMLKGLQELEEALSRK-KIPFYFLRGDPGQKIPEFVKEYEVGTLITDFSP 117
Query: 131 LREIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLID 190
LR KI + + + EVDAHNVVP W AS K EY+A T R K+ L E+L +
Sbjct: 118 LRIKAEWVGKIISAI--EIPFFEVDAHNVVPCWEASPKQEYAAHTFRPKLYGHLSEFLEE 175
Query: 191 YPMLEQ-----PIEKWTG-------TRQSIDWDSIIAAVLRKGAEV---PEIGWCESGED 235
+P LE I TG TR++ + + ++ PE E GE
Sbjct: 176 FPELEPNSESLKIRSGTGMPGILFRTRETEIKALFPEEISDENKDLLFEPEH--FEPGEK 233
Query: 236 AAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARK 295
AA + + + FL RL +Y T RN+P K ALS LSPYLHFGQISAQR LE KA K
Sbjct: 234 AARKEM----ESFLAARLDSYNTLRNDPTK-NALSNLSPYLHFGQISAQRVVLEVEKA-K 287
Query: 296 LCPEAIDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQ 355
PE+ FL+E++V +E+ADNFC+Y P YDS + +WA+KSL H +D+R++IYT E+
Sbjct: 288 SDPESKKAFLDEILVWKEIADNFCYYNPGYDSFESFPDWAKKSLNAHRNDRRKYIYTFEE 347
Query: 356 FEKAQTADPV 365
FE +T DP+
Sbjct: 348 FEAGKTHDPL 357
>gi|145353298|ref|XP_001420955.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|145357465|ref|XP_001422939.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144581191|gb|ABO99248.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144583183|gb|ABP01298.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 477
Score = 244 bits (624), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 145/341 (42%), Positives = 201/341 (58%), Gaps = 9/341 (2%)
Query: 29 GPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAK---ARQLGFMLRG 85
GPVVYW RD+R +N AL A++ AN+ VP+ VA ++ G+ AR+ F L+G
Sbjct: 26 GPVVYWCDRDRRCANNDALGRAMELANERRVPLVVAMHVGTDLSGSGIGGARRAVFALKG 85
Query: 86 LRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICNRV 145
L+ L ++ + I AS +V DFSPLRE R ++ + V
Sbjct: 86 LKELDEDLRARGVSTRTTTGSDVAGGIVETCETLNASAVVCDFSPLREGRAAREAVARVV 145
Query: 146 SDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQPIEKWTG-T 204
V + EVDAHNVVP WV S+K EY+A+T+R KI++ L ++L L+ I T
Sbjct: 146 E--VPVIEVDAHNVVPAWVTSDKQEYAARTIRPKIHRNLGDFLTAPQALDDLIAAPDALT 203
Query: 205 RQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAME-VLKGSKDGFLTKRLKNYPTDRNNP 263
DWD++I KGA VPE+ W + GE AA+ +L + D FL +RL Y +RN P
Sbjct: 204 PSETDWDALIDTARVKGAHVPEVDWIKPGERAALAALLDPNVDSFLPQRLTLY-GERNKP 262
Query: 264 LKPRALSGLSPYLHFGQISAQRCALEARKARKLCP-EAIDTFLEELIVRRELADNFCFYQ 322
PRA+S LSPYL+ GQ+S +R A EA + R + EAID++LEELIVRREL+DN+C +
Sbjct: 263 TSPRAVSRLSPYLNHGQLSPRRAAWEAAQLRGIVDDEAIDSYLEELIVRRELSDNYCLFN 322
Query: 323 PNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTAD 363
P YDSL+GA +WA+ SL HA D RE++Y + E+ T D
Sbjct: 323 PYYDSLQGASQWAQDSLSLHARDVREYVYDYKTLERGNTHD 363
>gi|410462734|ref|ZP_11316295.1| photolyase PhrII [Desulfovibrio magneticus str. Maddingley MBC34]
gi|409984146|gb|EKO40474.1| photolyase PhrII [Desulfovibrio magneticus str. Maddingley MBC34]
Length = 449
Score = 243 bits (621), Expect = 8e-62, Method: Compositional matrix adjust.
Identities = 153/364 (42%), Positives = 199/364 (54%), Gaps = 33/364 (9%)
Query: 11 VQPGRIRVLKQGSLDKKR--GPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLF 68
V P R+R L DK R GPVVYWM RDQR DNWAL+ A A + P+ VAF L
Sbjct: 3 VHPARVRPLS----DKPRRAGPVVYWMSRDQRAEDNWALLAAAGLARETGAPLHVAFALA 58
Query: 69 DQFLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDF 128
F GA R FMLRGL + + + F L G+ +P F+ E A + VTDF
Sbjct: 59 PGFPGASLRHYDFMLRGLAETEAALRAR-GVPFHLLLGDPAAVVPPFLDELHAGVCVTDF 117
Query: 129 SPLREIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYL 188
PLR K + + + ++E DAHNVVP VAS + EY+A T R KI+K L E+L
Sbjct: 118 DPLRLKIAWKRAVAE--AHAGPLYEADAHNVVPCVVASPRREYAAATFRPKIHKRLQEFL 175
Query: 189 IDYP---------MLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAME 239
+P ++ P+ W+ R S+ AV + VP+I G +AA
Sbjct: 176 EPFPELPVFPDAALVATPLVDWSAARASL-------AVDARPGPVPDI---VPGPNAARA 225
Query: 240 VLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPE 299
L D F +RL Y RN+P A+SGLSPY HFGQ++ QR ALE AR
Sbjct: 226 AL----DAFTAERLPGYAARRNDP-NAGAVSGLSPYFHFGQLAPQRAALEVLAARGRHAA 280
Query: 300 AIDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKA 359
+D +LEEL+VRREL+DN+C Y P+YD + +WARK+L HA D+REH YT QFE A
Sbjct: 281 DVDAYLEELVVRRELSDNYCHYTPHYDRYEALPDWARKTLDAHAGDEREHRYTPAQFEAA 340
Query: 360 QTAD 363
T++
Sbjct: 341 ATSE 344
>gi|350410392|ref|XP_003489031.1| PREDICTED: deoxyribodipyrimidine photo-lyase-like isoform 1 [Bombus
impatiens]
Length = 494
Score = 241 bits (615), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 126/337 (37%), Positives = 196/337 (58%), Gaps = 15/337 (4%)
Query: 31 VVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQ 90
++YWMFRD R +DNWAL+ A A K NVP+ + F + FL A R F+L+GL ++
Sbjct: 56 ILYWMFRDIRTQDNWALLFAQKIAVKRNVPLHICFCIMPSFLNASMRYYKFLLKGLMEIE 115
Query: 91 RNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICNRVSDSVT 150
++ + F L GE ++I FV+ ++ DF PL+ D + + + +
Sbjct: 116 EECKQ-LNLNFHLLHGEPNESILKFVKTYNMGAVIVDFYPLKLPMLWIDNVQKNLPEDIP 174
Query: 151 IHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYP-MLEQPI---EKWTGTRQ 206
I+++DAHN+VP W AS K E++AKT+R KIN L E+L ++P +++ P EK+
Sbjct: 175 IYQIDAHNIVPCWYASSKQEFAAKTIRNKINTKLQEFLTEFPPVIKHPYLTKEKFENN-- 232
Query: 207 SIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKP 266
+WD + V EI W + G ++ L + F+ L+ Y +RNNPL
Sbjct: 233 --NWDITLQDV-EASKPTTEITWAKPGYRNGIKEL----ENFIQNHLQKYGDERNNPLS- 284
Query: 267 RALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVRRELADNFCFYQPNYD 326
+S LSP+ HFG IS QRC LE ++ + L +++++F+EE I+RREL+DNFCFY YD
Sbjct: 285 NVISNLSPWFHFGMISVQRCILEIQEYKGLYKKSVESFMEEAIIRRELSDNFCFYNEKYD 344
Query: 327 SLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTAD 363
++GA+ WA K+L H D R+++Y+ Q E ++T D
Sbjct: 345 LVEGAYPWAIKTLNKHRKDTRKYVYSLSQLENSKTHD 381
>gi|350410395|ref|XP_003489032.1| PREDICTED: deoxyribodipyrimidine photo-lyase-like isoform 2 [Bombus
impatiens]
Length = 480
Score = 241 bits (615), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 126/337 (37%), Positives = 196/337 (58%), Gaps = 15/337 (4%)
Query: 31 VVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQ 90
++YWMFRD R +DNWAL+ A A K NVP+ + F + FL A R F+L+GL ++
Sbjct: 42 ILYWMFRDIRTQDNWALLFAQKIAVKRNVPLHICFCIMPSFLNASMRYYKFLLKGLMEIE 101
Query: 91 RNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICNRVSDSVT 150
++ + F L GE ++I FV+ ++ DF PL+ D + + + +
Sbjct: 102 EECKQ-LNLNFHLLHGEPNESILKFVKTYNMGAVIVDFYPLKLPMLWIDNVQKNLPEDIP 160
Query: 151 IHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYP-MLEQPI---EKWTGTRQ 206
I+++DAHN+VP W AS K E++AKT+R KIN L E+L ++P +++ P EK+
Sbjct: 161 IYQIDAHNIVPCWYASSKQEFAAKTIRNKINTKLQEFLTEFPPVIKHPYLTKEKFENN-- 218
Query: 207 SIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKP 266
+WD + V EI W + G ++ L + F+ L+ Y +RNNPL
Sbjct: 219 --NWDITLQDV-EASKPTTEITWAKPGYRNGIKEL----ENFIQNHLQKYGDERNNPLS- 270
Query: 267 RALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVRRELADNFCFYQPNYD 326
+S LSP+ HFG IS QRC LE ++ + L +++++F+EE I+RREL+DNFCFY YD
Sbjct: 271 NVISNLSPWFHFGMISVQRCILEIQEYKGLYKKSVESFMEEAIIRRELSDNFCFYNEKYD 330
Query: 327 SLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTAD 363
++GA+ WA K+L H D R+++Y+ Q E ++T D
Sbjct: 331 LVEGAYPWAIKTLNKHRKDTRKYVYSLSQLENSKTHD 367
>gi|308810671|ref|XP_003082644.1| class II DNA photolyase (ISS) [Ostreococcus tauri]
gi|116061113|emb|CAL56501.1| class II DNA photolyase (ISS) [Ostreococcus tauri]
Length = 484
Score = 238 bits (607), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 144/340 (42%), Positives = 195/340 (57%), Gaps = 10/340 (2%)
Query: 31 VVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLG---AKARQLGFMLRGLR 87
VVY+ RD R N AL A AN VP+ VA ++ G AR+ F L G R
Sbjct: 36 VVYYCDRDARTSCNDALARATRMANGFGVPLVVAMHVGRDLSGRGIGGARRAVFGLEGRR 95
Query: 88 LLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICNRVSD 147
L + +A + AS +V DF+PLRE R + I +
Sbjct: 96 ELDEALRGRGAATRTTIGDDAALGVLETCEAVNASAVVCDFTPLREGRATRATIARALEC 155
Query: 148 SVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQPIEKWTGT--R 205
V EVDAHNVVP WVAS+K EY+A+T+R KI K L E+L +++ + + G+ +
Sbjct: 156 PVV--EVDAHNVVPAWVASDKQEYAARTIRPKIRKKLDEFLTAPTVMDDLVVRAAGSLAQ 213
Query: 206 QSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAM-EVLKGSKDGFLTKRLKNYPTDRNNPL 264
DW +++A GA VPE+ W + GE AA+ +L S D FL RL Y +RN P
Sbjct: 214 METDWAALVADARANGAHVPEVHWIKPGEKAALASLLDPSVDSFLPDRLALY-GERNKPT 272
Query: 265 KPRALSGLSPYLHFGQISAQRCALEARKARKLCP-EAIDTFLEELIVRRELADNFCFYQP 323
PRA+S LSPYL+ GQ++ +R A EA + R + EAID++LEELI+RREL+DNFC Y P
Sbjct: 273 SPRAVSRLSPYLNHGQLAPRRAAWEAVQLRGIVADEAIDSYLEELIIRRELSDNFCLYNP 332
Query: 324 NYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTAD 363
+YDSL+GA +WA+ SL HASDKRE++Y E+A+T D
Sbjct: 333 DYDSLRGASQWAQDSLALHASDKREYVYDYATLERAKTHD 372
>gi|226359412|gb|ACO51512.1| photolyase [Strongylocentrotus franciscanus]
Length = 367
Score = 238 bits (607), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 128/310 (41%), Positives = 184/310 (59%), Gaps = 7/310 (2%)
Query: 54 ANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIP 113
A K VP+ V F L +FL R F+L GL+ + + + I F L G A+D +P
Sbjct: 2 ALKQEVPLHVCFCLVPRFLEGTIRHFNFVLEGLKEVSQELH-LLDIPFHLLIGYAKDVLP 60
Query: 114 NFVRECGASLLVTDFSPLREIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSA 173
F+ + G +VTDFSPLR R+ + + ++ +VDAHNVVP W AS KLEY A
Sbjct: 61 GFINDHGLGGVVTDFSPLRTSRQWIKDVKEELPKNIPFCQVDAHNVVPCWEASNKLEYGA 120
Query: 174 KTLRGKINKLLPEYLIDYPMLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESG 233
+T+R KI K L YL ++P + K + IDW+ A+ L V + W + G
Sbjct: 121 RTIRPKITKQLTTYLTEFPPVICHPHKAKAKAEPIDWEGAYAS-LEVDQTVKPVDWAQPG 179
Query: 234 EDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKA 293
M++L D F+ +RL+ + + RN+P K S LSP++HFGQ+S+QR AL R
Sbjct: 180 TSEGMKML----DSFVKERLRYFSSARNDPTK-SVCSNLSPWIHFGQLSSQRAALIVRLY 234
Query: 294 RKLCPEAIDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTK 353
R E++ ++EE I RREL+DNFCFY NYDS++G +WA+K+LKDHA DKRE++Y++
Sbjct: 235 RSRFSESVAGYIEESITRRELSDNFCFYNDNYDSIEGTNDWAKKTLKDHAKDKREYVYSR 294
Query: 354 EQFEKAQTAD 363
E E+A+T D
Sbjct: 295 ETLERAKTHD 304
>gi|68304208|ref|YP_249676.1| DNA photolyase 2 [Chrysodeixis chalcites nucleopolyhedrovirus]
gi|67973037|gb|AAY84003.1| DNA photolyase 2 [Chrysodeixis chalcites nucleopolyhedrovirus]
Length = 489
Score = 238 bits (606), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 143/369 (38%), Positives = 204/369 (55%), Gaps = 17/369 (4%)
Query: 7 PSTAVQPGRIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFN 66
PS R+R L S K+ G VVYWM RD RV+DNWALI+A + A+ +P+ V F
Sbjct: 25 PSRVRVISRLRELVVASEGKEAGGVVYWMSRDSRVQDNWALIYAQELAHTAKLPLYVVFC 84
Query: 67 LFDQFLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVT 126
+ F A RQ F+++GL ++ ++ I F + G A+ + ++VRE +V
Sbjct: 85 MTKSFNNASMRQFHFLIKGLEEVRVECQK-LDITFVMLDGSADLVLNDWVREHDICAVVC 143
Query: 127 DFSPLREIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPE 186
DF+PLR +R +I +++ D+V +VDAHNVVP WVAS K EYSA +R K+N L
Sbjct: 144 DFNPLRTVREWVSRIRDQLPDTVYFAQVDAHNVVPCWVASNKQEYSAMFMRKKLNSKLEC 203
Query: 187 YLIDYPMLEQPIEKWT-----GTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVL 241
YL +P + + + + T IDW ++A+ V + W E G +A+ VL
Sbjct: 204 YLKPFPPVVRHEYRSSVVLDPCTTTHIDWQQLLAS-RDADVSVGPVDWIEPGYISALNVL 262
Query: 242 KGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRC-----ALEARKARKL 296
F+ L Y RNNP+ + S +SP+ HFGQIS QR +L+ K
Sbjct: 263 A----RFIRCNLLKYKMSRNNPV-LKTQSNMSPFYHFGQISVQRVMLHLNSLKINKNDSG 317
Query: 297 CPEAIDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQF 356
I+ ++EE VRRELADNFCFY NYD+ GA WA+++L H SD R++IY+ QF
Sbjct: 318 IDSNINDYIEECFVRRELADNFCFYNSNYDTFLGAPNWAKETLVIHKSDSRQYIYSLLQF 377
Query: 357 EKAQTADPV 365
E QT D +
Sbjct: 378 EHNQTHDEL 386
>gi|118580428|ref|YP_901678.1| deoxyribodipyrimidine photolyase [Pelobacter propionicus DSM 2379]
gi|118503138|gb|ABK99620.1| Deoxyribodipyrimidine photo-lyase type II [Pelobacter propionicus
DSM 2379]
Length = 450
Score = 237 bits (605), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 151/363 (41%), Positives = 206/363 (56%), Gaps = 24/363 (6%)
Query: 9 TAVQPGRIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLF 68
TAV RI L + + + GPVVYWM RDQR DNWAL+HA + A + P+ V F L
Sbjct: 2 TAVDIRRIHPLNR--REGQDGPVVYWMSRDQRAMDNWALLHAQELALERRAPLVVLFTLA 59
Query: 69 DQFLGAKARQLGFMLRGLRLLQRNIEETFQIL------FFLFQGEAEDNIPNFVRECGAS 122
FLGA RQ GFMLRGL ET Q+L F+L +GE + +FV
Sbjct: 60 PSFLGATLRQYGFMLRGL-------AETAQLLAKMNIPFYLLRGEPVGQLCSFVERNRVG 112
Query: 123 LLVTDFSPLREIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINK 182
+VTDF PLR ++R + R+ V EVD+HN+VP S+K EY A TLR K+ +
Sbjct: 113 TVVTDFDPLR-VKRVWREGAARLC-GVPFFEVDSHNIVPCRFVSDKQEYGAHTLRPKLRR 170
Query: 183 LLPEYLIDYPMLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLK 242
LL ++L ++P L W Q +D I++ L V E+ G AA E L+
Sbjct: 171 LLADFLHEFPPLIPHPHAWPVPFQPLDPQGILSD-LYMDRSVSELSNPLPGTRAAGERLR 229
Query: 243 GSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAID 302
F+ + L++Y RN+P S LSP+LHFGQ++ QR ALE + P + +
Sbjct: 230 S----FIAQGLEDYGLRRNDPCCD-GQSELSPWLHFGQLAPQRVALETVRTLSGSPSS-E 283
Query: 303 TFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTA 362
FL+ELIVRREL+DNFC + YD L+G WA K+L +H D+RE++YT+EQF+ A+T
Sbjct: 284 AFLDELIVRRELSDNFCLHNQAYDRLEGFPAWALKTLGEHRHDRREYLYTQEQFQDAETH 343
Query: 363 DPV 365
DP+
Sbjct: 344 DPL 346
>gi|258405445|ref|YP_003198187.1| deoxyribodipyrimidine photolyase [Desulfohalobium retbaense DSM
5692]
gi|257797672|gb|ACV68609.1| deoxyribodipyrimidine photolyase [Desulfohalobium retbaense DSM
5692]
Length = 469
Score = 236 bits (602), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 140/342 (40%), Positives = 187/342 (54%), Gaps = 12/342 (3%)
Query: 26 KKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRG 85
+ GPV YWM RDQR+ DNWAL+ A A P+ + F L + G R FML G
Sbjct: 21 RGSGPVAYWMSRDQRLHDNWALLQAQHMARTRQAPLIIVFCLVPSYSGGARRHFDFMLTG 80
Query: 86 LRLLQRNIEETFQILFFLFQGE-AEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICNR 144
LR + + + I F L GE + F R +V DF PLR ++ +
Sbjct: 81 LRQVADSAAK-LGIPFVLLTGEDPPGELAGFCRTHAIGTVVMDFDPLRTKQQWQHTFAGH 139
Query: 145 VSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQPIEKWTGT 204
EVDAHNVVP ASEK EY+A+T+R K+ + LPE+L +P L W G+
Sbjct: 140 WEGECL--EVDAHNVVPCRWASEKQEYAARTIRPKLQRQLPEFLDPFPELVPHPVPWRGS 197
Query: 205 R-QSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNP 263
DW++ + L P + W SGE+ A+++ + F+ L Y RN+P
Sbjct: 198 LLPEPDWEAA-SRSLAAPEYGPPLSWS-SGEETALDLARE----FIASGLSAYAEKRNDP 251
Query: 264 LKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVRRELADNFCFYQP 323
A+SGLSPYLHFGQI+ QR AL AR A E+ + FLEEL++RRELA+NFCFY P
Sbjct: 252 TA-GAVSGLSPYLHFGQIAPQRVALMARDANWAPAESREGFLEELVIRRELAENFCFYNP 310
Query: 324 NYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPV 365
YD G WA+++L DH D RE +YT EQ+E A+T DP+
Sbjct: 311 VYDCFGGLPAWAQQTLDDHRGDHREVVYTFEQWEAARTHDPL 352
>gi|294102825|ref|YP_003554683.1| deoxyribodipyrimidine photolyase [Aminobacterium colombiense DSM
12261]
gi|293617805|gb|ADE57959.1| deoxyribodipyrimidine photolyase [Aminobacterium colombiense DSM
12261]
Length = 456
Score = 235 bits (600), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 141/353 (39%), Positives = 203/353 (57%), Gaps = 16/353 (4%)
Query: 15 RIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGA 74
R R+L+ G GPV YWM RDQRV DNWAL+ A A N P+ V F L FL A
Sbjct: 4 RGRILQNGI--PGEGPVAYWMNRDQRVEDNWALLEAQKYALLNKKPLLVVFCLTPHFLSA 61
Query: 75 KARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREI 134
R FML GL +++ + I F L + EA ++PN +++ S L TDFSPLR
Sbjct: 62 SYRAYHFMLHGLHEVRQGLL-GLNIPFILLEQEAPLSLPNLIKKIDVSALFTDFSPLRIK 120
Query: 135 RRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYP-M 193
+ ++I ++ + +E+DAHN+VP W AS K EYSA+T R +I K +P++L P +
Sbjct: 121 KEWVEQIKKDIA--IPFYEIDAHNIVPCWEASTKKEYSARTFRPRILKKVPDFLTPIPSL 178
Query: 194 LEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRL 253
+ P + + + + ++ +P G ++G A ME L+ F+ K+L
Sbjct: 179 IRHPYNETLALKTAAPLE-MLTKYHYPQKTLPLYG-GKAGYTAGMECLQK----FIKKKL 232
Query: 254 KNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKA---RKLCPEAIDTFLEELIV 310
+ Y RN+P LS LSP+LHFGQI+ QR A+ +K + +++D+FLEELIV
Sbjct: 233 RVYKELRNDPTN-NVLSQLSPFLHFGQIAPQRVAIVIKKHGENHESIRDSVDSFLEELIV 291
Query: 311 RRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTAD 363
RRELADNFCFY P+YD +G +WA+K+L +H D R+ YT E+ E +T D
Sbjct: 292 RRELADNFCFYTPSYDCFEGFPQWAQKTLDEHRWDPRKFTYTLEELEHGKTHD 344
>gi|326427066|gb|EGD72636.1| DNA photolyase [Salpingoeca sp. ATCC 50818]
Length = 512
Score = 235 bits (600), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 142/338 (42%), Positives = 192/338 (56%), Gaps = 12/338 (3%)
Query: 31 VVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQ 90
VVYWM RDQR +DNWAL++A A VP+ V F+L +FL A R GFMLRGL
Sbjct: 31 VVYWMSRDQRAKDNWALLYARSLARSARVPLVVVFSLVPKFLDATIRHYGFMLRGLHQTA 90
Query: 91 RNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLR-EIRRCKDKICNRVSDSV 149
+++ E + F L QG A +P F + A+ ++ D SPLR +R KD + +V
Sbjct: 91 KHLHEKL-VPFHLLQGSAATTVPAFAAQHEAAAVICDMSPLRVPLRWVKDVGQALEAQNV 149
Query: 150 TIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQPIEKWTGTRQ--- 206
+ +VDAHN+VPVWV S+K EY+A+T+R KI+K L YL +P L+ + G +
Sbjct: 150 PLLQVDAHNIVPVWVTSQKQEYAARTIRPKIHKHLDTYLQPFPELDANDKDTLGDMELPP 209
Query: 207 SIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKP 266
D ++ +L V E+ W E G + M + + F R K + RNNP
Sbjct: 210 VFDLEAQFD-MLEVDTSVKEVDWIEPGYEQGM----AAAEAFGRDRAKKFDELRNNP-NE 263
Query: 267 RALSGLSPYLHFGQISAQRCALE-ARKARKLCPEAIDTFLEELIVRRELADNFCFYQPNY 325
S LSPY HFGQISA L K K + + TF+EE +VRREL+DNFCFY Y
Sbjct: 264 DVCSNLSPYFHFGQISAAAVVLLLKSKYSKKAAKGVQTFIEEAVVRRELSDNFCFYNRRY 323
Query: 326 DSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTAD 363
DS+ GA WAR +L H DKRE++YT+EQ E+ +T D
Sbjct: 324 DSIDGAAVWARDTLDTHRHDKREYVYTREQLEQGKTHD 361
>gi|374300240|ref|YP_005051879.1| DNA photolyase FAD-binding protein [Desulfovibrio africanus str.
Walvis Bay]
gi|332553176|gb|EGJ50220.1| DNA photolyase FAD-binding protein [Desulfovibrio africanus str.
Walvis Bay]
Length = 465
Score = 234 bits (598), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 135/337 (40%), Positives = 194/337 (57%), Gaps = 10/337 (2%)
Query: 29 GPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRL 88
GPV+YWM R+ RV DNW L+ A + A +VP+AVA+ L +L A RQ F+L GLR
Sbjct: 20 GPVLYWMHREHRVNDNWGLLRARELAVDRDVPLAVAYGLAPDYLEAGLRQYAFLLAGLRE 79
Query: 89 LQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICNRVSDS 148
++ +E I FFL G+ + IP+ R ++TDF PLR R +I V
Sbjct: 80 VEHGLE-AIGIPFFLLLGDPAEVIPDLARYLAVGAIITDFDPLRIKRGWLKRIAAEVQ-- 136
Query: 149 VTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQPIEKWTGTRQSI 208
+ + EVD+ N+VP SEK E++A+T R KI++LLPE+L P L+ W +
Sbjct: 137 IAVEEVDSRNIVPCRAVSEKKEWAARTFRPKIHRLLPEFLTAIPTLKPQTVPWNLDWPAN 196
Query: 209 DWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRA 268
DW + + L+ ++V + SGE AA +L F +RL Y RN+P A
Sbjct: 197 DWSQAMDS-LKVSSDVGRLSGPRSGELAAGALLAE----FTAERLSGYAVGRNDP-NGGA 250
Query: 269 LSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVRRELADNFCFYQPNYDSL 328
S LS +LHFG +SAQR AL +A E D FLE+L+VRRELA+NFC ++P YDS
Sbjct: 251 TSRLSAHLHFGMLSAQRVALVVIQA-DAPQEDKDAFLEQLVVRRELAENFCLHEPAYDSA 309
Query: 329 KGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPV 365
+ +WAR++L H D R ++Y++++ E+A T DP+
Sbjct: 310 ESFPDWARRTLDAHQGDPRPYLYSRDELEQACTHDPL 346
>gi|451946553|ref|YP_007467148.1| Deoxyribodipyrimidine photo-lyase type II [Desulfocapsa sulfexigens
DSM 10523]
gi|451905901|gb|AGF77495.1| Deoxyribodipyrimidine photo-lyase type II [Desulfocapsa sulfexigens
DSM 10523]
Length = 459
Score = 233 bits (595), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 138/354 (38%), Positives = 198/354 (55%), Gaps = 15/354 (4%)
Query: 10 AVQPGRIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFD 69
V R R+L++G L GPV+YWM RDQRV DNWAL++A ++A + + V F +
Sbjct: 6 TVDQERSRLLQRGHLGD--GPVIYWMSRDQRVHDNWALLYAQERALALHRGLIVVFCIDL 63
Query: 70 QFLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFS 129
+ A R + F+L GL LQ +++ I F+L G + +P F+++ +LL+TDF
Sbjct: 64 DYPAANLRHVAFLLHGLEELQHTLQKA-AIGFYLLHGAPDIALPPFLKKINPALLITDFD 122
Query: 130 PLREIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLI 189
PLR ++ K S + + EVDAHN+VP W+AS+K EY+A T+R KI +LLP +L
Sbjct: 123 PLRIKKQWKKDTLQYCS--MPVFEVDAHNIVPCWLASDKREYAAYTIRKKIQRLLPRFLT 180
Query: 190 DYPMLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFL 249
D+P LE+ ++ Q + + + K V E+ W GE A +L FL
Sbjct: 181 DFPPLEK--HPYSSATQPFSARTYLKQI--KDKSVAEVHWIHPGERAGKNLLA----EFL 232
Query: 250 TKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELI 309
L +Y T+RNNP S LSPY HFGQ++ QR A E K+ E + +LEELI
Sbjct: 233 AHGLHSYSTERNNPCLD-GQSNLSPYFHFGQLAPQRVAWEVEKSPADL-ENKEAYLEELI 290
Query: 310 VRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTAD 363
+RREL+DNFC+Y +YD +WA KSL H D R ++ + E A T D
Sbjct: 291 IRRELSDNFCYYSHDYDRCTTFPDWAGKSLDIHRGDVRSYVANLQTLESATTED 344
>gi|390345301|ref|XP_003726308.1| PREDICTED: LOW QUALITY PROTEIN: deoxyribodipyrimidine
photo-lyase-like [Strongylocentrotus purpuratus]
Length = 501
Score = 233 bits (594), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 135/335 (40%), Positives = 193/335 (57%), Gaps = 19/335 (5%)
Query: 31 VVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQ 90
+VYWM RDQRV+DNWAL+ A A K VP+ V F L +FL R F+L GL+
Sbjct: 79 IVYWMSRDQRVQDNWALLFAQRLAMKQEVPLHVCFCLVPKFLEGTIRHFNFVLEGLK--- 135
Query: 91 RNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICNRVSDSVT 150
E Q+ F + C + L++ F ++ + K+K + D
Sbjct: 136 ----EVSQVSSIFFSPGFSXAVICSSNIC-SRLVMCMF--IQHLDSXKNKQFLKKED--- 185
Query: 151 IHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQPIEKWTGTRQSIDW 210
I EVDAHNVVP W AS KLEY A+T+R KI K L YL ++P + +K + IDW
Sbjct: 186 IAEVDAHNVVPCWEASNKLEYGARTIRPKITKQLSTYLTEFPPVICHPQKAKAKAEPIDW 245
Query: 211 DSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALS 270
+ A+ L V + W + G M++L D F+ +RL+ + + RN+P K S
Sbjct: 246 EGAYAS-LEVDQTVKPVDWAKPGTSEGMKML----DSFVKERLRYFSSARNDPTKS-VCS 299
Query: 271 GLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVRRELADNFCFYQPNYDSLKG 330
LSP++HFGQ+S+QR AL R R E++ F+EE I+RREL+DNFCFY YDS++G
Sbjct: 300 NLSPWIHFGQLSSQRAALIVRLYRSRFSESVAAFIEESIIRRELSDNFCFYNDKYDSIEG 359
Query: 331 AWEWARKSLKDHASDKREHIYTKEQFEKAQTADPV 365
+WA+K+LKDHA DKR+++Y++E E+A+T D +
Sbjct: 360 TNDWAKKTLKDHAKDKRDYVYSRETLERAKTYDQL 394
>gi|357633977|ref|ZP_09131855.1| DNA photolyase FAD-binding [Desulfovibrio sp. FW1012B]
gi|357582531|gb|EHJ47864.1| DNA photolyase FAD-binding [Desulfovibrio sp. FW1012B]
Length = 462
Score = 233 bits (593), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 146/351 (41%), Positives = 190/351 (54%), Gaps = 9/351 (2%)
Query: 11 VQPGRIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQ 70
V P RIR L G K GPVV WM RDQR DNWAL+HA A P+ F L
Sbjct: 3 VHPARIRPL--GFTPPKPGPVVLWMGRDQRADDNWALLHAAALAKAAGAPLFALFALPPD 60
Query: 71 FLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSP 130
F A AR F+LRGL ++ + + I L G+ +P F+R A + VTDF P
Sbjct: 61 FPPATARHADFLLRGLAAVETALRD-HGIPLALVPGDPAVAVPAFLRRVRAGVCVTDFDP 119
Query: 131 LREIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLID 190
LR R ++ + + EVDAHNVVP +VAS K EY+A T R KI KLLPE+L
Sbjct: 120 LRPGRAAREAVATAPVWDGALLEVDAHNVVPAFVASAKREYAAATFRPKILKLLPEFLEP 179
Query: 191 YPMLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLT 250
+P L +DW++ A ++ + P G G +AA E L FL
Sbjct: 180 FPDLPAFAAGNLAGFAPVDWEAARAGLVLDPSVAPVAG-ITPGPEAAREALAA----FLA 234
Query: 251 KRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIV 310
RL Y RN+P A S LSP+ H G ++ QR AL+A +A+K P + FLEEL+V
Sbjct: 235 DRLPAYADRRNDP-NAGATSTLSPWFHHGHLAPQRAALDALEAKKRAPAGAEAFLEELVV 293
Query: 311 RRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQT 361
RRELADN+C ++P YD+L WA+K+L HA+D R + YT +FE A T
Sbjct: 294 RRELADNYCLHEPAYDTLAALPAWAQKTLGAHAADPRPYRYTAREFETAAT 344
>gi|294942633|ref|XP_002783619.1| DNA photolyase FAD binding domain, putative [Perkinsus marinus ATCC
50983]
gi|239896121|gb|EER15415.1| DNA photolyase FAD binding domain, putative [Perkinsus marinus ATCC
50983]
Length = 506
Score = 232 bits (591), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 144/373 (38%), Positives = 200/373 (53%), Gaps = 28/373 (7%)
Query: 7 PSTAVQPGRIRVLKQGSLD-KKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAF 65
P ++V P RIRVL Q GPV+YWM R+ R RDNWALIHA + A ++ P+ V +
Sbjct: 2 PQSSVSPDRIRVLNQPVTGLTSPGPVIYWMSREIRSRDNWALIHAQNVALRSKRPLLVVY 61
Query: 66 NLFDQFLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRE----CGA 121
NL +LG RQ F + GL+++ N+ + L F EA P F+ + G
Sbjct: 62 NLAVGYLGGGLRQHAFKVGGLKVVAANLSQ----LNIPFAIEASPKFPAFLADITERVGC 117
Query: 122 SLLVTDFSPLR---EIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRG 178
+VTDF+PLR E K R+ + VDAHNVVP WV S+K+E +A T+R
Sbjct: 118 KYVVTDFTPLRLNKEWVAAFTKHAKRLD--IRFELVDAHNVVPCWVTSDKMERAAVTIRP 175
Query: 179 KINKLLPEYLIDYPMLEQ-------PIEKWTGTRQSIDWDSIIAAVLRKGAE-VPEIGWC 230
K+ E+ YP L++ + T T ID ++ K E V I W
Sbjct: 176 KLWHHFDEFCTKYPRLKRHPYTISDDVHFHTVTTSEIDALLTNEEIVGKLDEAVKPIDWL 235
Query: 231 ESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEA 290
GEDA +++ G K + NY T RNNP P S LSPY H+G +S QR +A
Sbjct: 236 TPGEDAGLQLALG-----YVKHMPNYSTQRNNPTNP-IQSDLSPYFHYGFVSPQRVIYDA 289
Query: 291 RKARKLCPEAIDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHI 350
+ + E D F+E+ ++RRELADNFC+Y NYD +G +W + +L++HA D RE++
Sbjct: 290 YNSTDINEEDRDEFIEQCMIRRELADNFCYYNDNYDKFEGFPDWGQHTLREHAKDDREYL 349
Query: 351 YTKEQFEKAQTAD 363
Y+ EQ EKA T D
Sbjct: 350 YSLEQLEKADTHD 362
>gi|170716940|gb|ACB32172.1| DNA photolyase [Ampelophaga rubiginosa nucleopolyhedrovirus]
Length = 564
Score = 232 bits (591), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 134/366 (36%), Positives = 199/366 (54%), Gaps = 26/366 (7%)
Query: 13 PGRIRVLK--------------QGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNN 58
P R+R+LK G++D G VVYWM RD RV+DNWA+I+A A +
Sbjct: 94 PRRVRILKLGRSRTAVVDDDTLNGNID---GGVVYWMSRDSRVQDNWAMIYAQRLAIERQ 150
Query: 59 VPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRE 118
VP+ V F L FL A RQ F+L GL+ +QR E I F + G + + ++V+
Sbjct: 151 VPLHVCFCLTSSFLNASLRQFDFLLEGLKSVQRECHE-LNIGFNVLDGSGDLTLNDWVQT 209
Query: 119 CGASLLVTDFSPLREIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRG 178
S +V DF+PLR +R K+ ++++ V +VDAHN++P W AS K E A T R
Sbjct: 210 NNISAVVCDFNPLRVVRDWVTKVKSQLAPHVFFAQVDAHNIIPCWQASLKQEVYASTFRP 269
Query: 179 KINKLLPEYLIDYP-MLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAA 237
K+ L +L ++P ++ P K T IDW ++ + V + W G D A
Sbjct: 270 KVLSQLDRFLTEFPAVIVHPYGK-NCTAADIDWHYLLQS-RDANKSVSPVKWAVPGYDHA 327
Query: 238 MEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLC 297
++ L F+ L Y + RNNP +S LSP+ HFGQIS QR L+ + +
Sbjct: 328 VKSLYI----FIQDNLSKYASLRNNPTTT-VISNLSPWFHFGQISVQRVVLKILSLKSVY 382
Query: 298 PEAIDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFE 357
P+++D +++E++VRRELADNFCFY YD ++GA +WA++++ H D R +IY +
Sbjct: 383 PDSVDRYIDEVVVRRELADNFCFYNDRYDCVEGAPQWAQETIDQHKYDHRSYIYNLTELA 442
Query: 358 KAQTAD 363
QT D
Sbjct: 443 SCQTHD 448
>gi|317151798|ref|YP_004119846.1| deoxyribodipyrimidine photolyase [Desulfovibrio aespoeensis Aspo-2]
gi|316942049|gb|ADU61100.1| deoxyribodipyrimidine photolyase [Desulfovibrio aespoeensis Aspo-2]
Length = 450
Score = 230 bits (587), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 147/351 (41%), Positives = 194/351 (55%), Gaps = 18/351 (5%)
Query: 15 RIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGA 74
R+ L Q L GP++YWM R+QRVRDNW L+HA + A + + V V F L FLGA
Sbjct: 7 RLYRLNQAPLAA--GPILYWMSREQRVRDNWGLLHAREMAGQEHALVVV-FCLAPAFLGA 63
Query: 75 KARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREI 134
RQ FML GL ++ ++ I F L QG+ IP E GA +VTDF PLR
Sbjct: 64 TLRQYDFMLSGLAQVEGDLA-ALGIPFVLLQGDPGQEIPRLAAELGAGGVVTDFDPLRVK 122
Query: 135 RRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPML 194
+ + + + V+ EVD HNVVP S K EY+A+T+R KI++L+ EYL ++P L
Sbjct: 123 QGWQGAAAHALP--VSFIEVDGHNVVPARQVSPKQEYAARTIRPKIHRLIGEYLEEFPPL 180
Query: 195 EQPIEKWTGTRQSI---DWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTK 251
E + + W + A + GA P GEDAA + L D F+
Sbjct: 181 EPQVAPAPPCAATARAAHWGEVRAGLAVDGAVGPVS--LVPGEDAAHDAL----DRFVAD 234
Query: 252 RLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVR 311
RL Y RN+P S LS Y HFGQ++ QR AL A + + E +LEEL+VR
Sbjct: 235 RLHVYAGQRNDP-NADGTSRLSAYFHFGQLAPQRAALAAAASGR--GEGQAAYLEELVVR 291
Query: 312 RELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTA 362
RELADNFC + P YDSL GA WA K+L +H +D R H YT+E FE+A+T
Sbjct: 292 RELADNFCLHNPQYDSLAGAPAWALKTLGEHRADPRAHCYTRETFEQARTG 342
>gi|288573172|ref|ZP_06391529.1| Deoxyribodipyrimidine photo-lyase [Dethiosulfovibrio peptidovorans
DSM 11002]
gi|288568913|gb|EFC90470.1| Deoxyribodipyrimidine photo-lyase [Dethiosulfovibrio peptidovorans
DSM 11002]
Length = 448
Score = 229 bits (583), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 145/357 (40%), Positives = 200/357 (56%), Gaps = 22/357 (6%)
Query: 9 TAVQPGRIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLF 68
T V P RIR L++GS GPVVYWM RDQRVRDNWAL++A D A N P+ V F L
Sbjct: 6 TRVDPRRIRRLREGS--PGEGPVVYWMSRDQRVRDNWALLYAQDVALAANRPLEVVFCLS 63
Query: 69 DQFLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDF 128
F+GA R FMLRGL + + + + F + GE ++ +P + ++ ++LVTDF
Sbjct: 64 RDFIGAPIRHYDFMLRGLTETAKELSK-LNVSFKIPLGEPKEKLPLYAKKRDPAVLVTDF 122
Query: 129 SPLREIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYL 188
SPLR + + + + S I +VD HNVVP W S+K EY+A+T+R K+++ E+L
Sbjct: 123 SPLRHQKGWIESVYEYL--SCPIDQVDGHNVVPAWETSDKREYAARTIRPKLHRKFQEFL 180
Query: 189 IDYPMLEQ-PIE-KWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKD 246
+P +++ P E + T S + + +VL E+P G A L+
Sbjct: 181 TAFPEMKKLPYEDRETDRVPSTEELRLDGSVLPVEGEIP-------GSAAGEMRLR---- 229
Query: 247 GFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLE 306
F+ + L Y DRN+P S LSPY+HFGQISAQ EA A D F+E
Sbjct: 230 SFIARGLSGYDRDRNDP-NLDGTSRLSPYIHFGQISAQTVVREAFLADL---PGSDAFVE 285
Query: 307 ELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTAD 363
E +VRRELA+NFC Y+P YD + EW RK+L H SDKR +Y + E+A T D
Sbjct: 286 EAMVRRELAENFCLYEPLYDRYEALPEWGRKALDHHRSDKRPWLYGLSELEEAGTHD 342
>gi|299473188|emb|CBN78764.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 506
Score = 228 bits (582), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 141/355 (39%), Positives = 206/355 (58%), Gaps = 18/355 (5%)
Query: 15 RIRVLKQGSLDKKRGP-VVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFD-QFL 72
R+R L S+ + +G VVYWM RDQR DNWA+++A + A + VP+ VAF L Q
Sbjct: 14 RVRCLTDASVPRDQGNCVVYWMSRDQRAEDNWAMLYAKNLAQEGGVPLVVAFVLGAWQVT 73
Query: 73 GAKA--RQLGFMLRGLRLLQRNIEETFQILFFLFQG-EAEDNIPNFVRECGASLLVTDFS 129
K R GFML+GL + ++ + +I F L Q E D +P F +E GA +VTD
Sbjct: 74 EPKTTLRYAGFMLKGLEETEGDLRKK-KIPFHLLQAAEPRDVVPAFAKELGALAIVTDMC 132
Query: 130 PLRE-IRRCKD--KICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPE 186
PLR+ RR ++ + N+ D + +VDAHNVVPVW S+K E A+T+R KI+ P+
Sbjct: 133 PLRDPTRRAREVAEELNKSGDGTPLFQVDAHNVVPVWATSDKQETMARTIRPKIHAR-PD 191
Query: 187 YLIDYPMLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKD 246
+L P L P + T + DW + + L VPEI W + G A + L+
Sbjct: 192 FLGAIPEL-SPNPQGTKLPAATDWKAAQTS-LDLDRSVPEISWLKPGAKGASDNLQS--- 246
Query: 247 GFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLE 306
F+ R+K + NNP S +SPY + GQ+SAQ + + +R+ P+ + F+E
Sbjct: 247 -FIETRMKGFADLSNNP-NEDVCSHMSPYFNLGQMSAQAAVMRVKASRRH-PDGVKAFVE 303
Query: 307 ELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQT 361
+ +VRREL+DNFCFY NYD+L GA WAR+SL+ HA+D+RE Y+ ++ E+A+T
Sbjct: 304 QGVVRRELSDNFCFYNDNYDNLSGAAGWARESLEAHANDQREWTYSVQELEEAKT 358
>gi|239905196|ref|YP_002951935.1| deoxyribodipyrimidine photo-lyase [Desulfovibrio magneticus RS-1]
gi|239795060|dbj|BAH74049.1| deoxyribodipyrimidine photo-lyase [Desulfovibrio magneticus RS-1]
Length = 449
Score = 227 bits (579), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 145/360 (40%), Positives = 187/360 (51%), Gaps = 29/360 (8%)
Query: 11 VQPGRIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQ 70
V P R+R L + ++ GPVVYWM RDQR DNWAL+ A D A + P+ VAF L
Sbjct: 3 VHPARVRPLAEKP--RRAGPVVYWMSRDQRAEDNWALLAAADLARETGAPLHVAFALAPG 60
Query: 71 FLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSP 130
+ GA R FMLRGL + + + F L G+ P F+R A VTDF P
Sbjct: 61 YPGASLRHYDFMLRGLAETEAALRAR-GVPFHLLLGDPAAVAPEFLRAIAAGACVTDFDP 119
Query: 131 LREIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLID 190
+R K + + + EVDAHNVVP VAS + EY+A T R KI+K L E+L
Sbjct: 120 MRVKTLWKRAVAEAFAGPLL--EVDAHNVVPCVVASPRREYAAATFRPKIHKRLQEFLEP 177
Query: 191 YP---------MLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVL 241
+P ++ P W R S+ D+ VP+I
Sbjct: 178 FPELPAFPDVALVATPPVDWGAARASLSVDAFPG-------PVPDI-------VPGPAAA 223
Query: 242 KGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAI 301
+ + D F +RL Y RN+P A+SGLSPY HFGQ++ QR ALE AR
Sbjct: 224 RAALDAFTAERLPGYAARRNDP-NAGAVSGLSPYFHFGQLAPQRAALEVLAARAGHVADA 282
Query: 302 DTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQT 361
D +LEEL+VRREL+DN+C Y PNYD +WARK+L HA D+REH YT QFE A +
Sbjct: 283 DAYLEELLVRRELSDNYCHYTPNYDRYDALPDWARKTLDAHAGDEREHRYTPAQFEAAAS 342
>gi|145219390|ref|YP_001130099.1| deoxyribodipyrimidine photo-lyase type II [Chlorobium
phaeovibrioides DSM 265]
gi|145205554|gb|ABP36597.1| Deoxyribodipyrimidine photo-lyase type II [Chlorobium
phaeovibrioides DSM 265]
Length = 452
Score = 227 bits (579), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 142/344 (41%), Positives = 196/344 (56%), Gaps = 17/344 (4%)
Query: 25 DKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLR 84
++KRGPV+YWM RDQRV+ N AL+ + +A P+ V F L F+GA RQ FML
Sbjct: 14 EEKRGPVIYWMSRDQRVQHNRALLFSQMKAKALGQPLRVVFTLASSFIGATYRQYHFMLE 73
Query: 85 GLRLLQRNIEETFQILFFLFQGEAEDNIPN-----FVRECGASLLVTDFSPLREIRRCKD 139
GLR ++ + E I F L Q + P + GA +VTD+SPLR R+ K
Sbjct: 74 GLREIELLLGE-LNIGFVLLQCSPQSGGPGKELEGYAGSSGAGCVVTDYSPLRISRQWKQ 132
Query: 140 KICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQPIE 199
+ S V ++EVDAHN+VP AS K EY+A+T R KIN+LL E+L +E
Sbjct: 133 QAA--ASLKVPLYEVDAHNIVPCHAASGKQEYAARTFRPKINRLLGEFLQPLQAVEAMPH 190
Query: 200 KWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLKNYPTD 259
+ Q ++W + A L V I W + GE AA E L+ F++++L Y
Sbjct: 191 R--AELQKVNWREVFAN-LSVDRTVEPIDWLKPGERAASEHLRR----FISEKLPRYSEL 243
Query: 260 RNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVRRELADNFC 319
RN+P S LS YLHFGQ+SA + ALE + + E+ FLEELIVRREL+DN+C
Sbjct: 244 RNDPTA-EGTSLLSAYLHFGQLSAAQVALEVQSS-GAPEESKAAFLEELIVRRELSDNYC 301
Query: 320 FYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTAD 363
+Q YD+ +G WAR+SL+ H+ D RE +Y+ ++FE A T D
Sbjct: 302 AHQEQYDAYEGLPGWARQSLEQHSLDPRETLYSPQEFETAATHD 345
>gi|294942625|ref|XP_002783615.1| Deoxyribodipyrimidine photo-lyase, putative [Perkinsus marinus ATCC
50983]
gi|239896117|gb|EER15411.1| Deoxyribodipyrimidine photo-lyase, putative [Perkinsus marinus ATCC
50983]
Length = 506
Score = 227 bits (578), Expect = 9e-57, Method: Compositional matrix adjust.
Identities = 142/375 (37%), Positives = 197/375 (52%), Gaps = 32/375 (8%)
Query: 7 PSTAVQPGRIRVLKQGSLD-KKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAF 65
P ++V P RIRVL Q + GPV+YWM R+ R RDNWALIHA + A ++ P+ V +
Sbjct: 2 PQSSVSPDRIRVLNQPATGLTSPGPVIYWMSREIRSRDNWALIHAQNVALRSKRPLLVVY 61
Query: 66 NLFDQFLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIP----NFVRECGA 121
NL +LG RQ F + GL+++ N+ + L F E P + G
Sbjct: 62 NLAVGYLGGGLRQHAFKVGGLKVVAANLSQ----LNIPFAIETSPKFPALLADITERVGC 117
Query: 122 SLLVTDFSPLR---EIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRG 178
+VTDF+PLR E K R+ + VDAHNVVP WV S+K+E +A T+R
Sbjct: 118 KYVVTDFTPLRLNKEWVAAFTKHAKRLD--IRFELVDAHNVVPCWVTSDKMERAAVTIRP 175
Query: 179 KINKLLPEYLIDYPMLEQ-------PIEKWTGTRQSID---WDSIIAAVLRKGAEVPEIG 228
K+ E+ YP L++ + T T I+ + I L K E I
Sbjct: 176 KLWHHFDEFCTKYPRLKRHAYTISDDVHFHTVTTSEIEALLTNDEIVGKLDKAVE--PID 233
Query: 229 WCESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCAL 288
W GEDA +++ G K L NY T RNNP P S LSPY H+G +S QR
Sbjct: 234 WLTPGEDAGLQLALG-----YVKNLPNYSTQRNNPTNP-IQSDLSPYFHYGFVSPQRVIY 287
Query: 289 EARKARKLCPEAIDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKRE 348
+A + + E D F+E+ ++RRELADNFC+Y NYD +G +W + +L++HA D RE
Sbjct: 288 DAYNSTDINEEDRDEFIEQCMIRRELADNFCYYNDNYDKFEGFPDWGQHTLREHAKDDRE 347
Query: 349 HIYTKEQFEKAQTAD 363
++Y+ EQ E A T D
Sbjct: 348 YLYSLEQLENADTHD 362
>gi|452853146|ref|YP_007494830.1| Deoxyribodipyrimidine photo-lyase [Desulfovibrio piezophilus]
gi|451896800|emb|CCH49679.1| Deoxyribodipyrimidine photo-lyase [Desulfovibrio piezophilus]
Length = 445
Score = 226 bits (577), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 140/349 (40%), Positives = 198/349 (56%), Gaps = 14/349 (4%)
Query: 17 RVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKA 76
R+ + D GP++YWM R+QRV+DNW L+HA + A ++ P+ V F L FLGA
Sbjct: 7 RIHRLNDADMSAGPILYWMSREQRVQDNWGLLHARELAGEDR-PLIVLFCLVPGFLGATL 65
Query: 77 RQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRR 136
RQ FML GL ++ ++ I F L G+ E+ + V E G +VTDF PLR +
Sbjct: 66 RQDDFMLNGLAEVENDLA-ALGIAFLLRLGDPEEEVIRCVLEKGVGAVVTDFDPLRIKQG 124
Query: 137 CKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQ 196
+ ++ + + V + EVD HNVVP S+K EY+A+TLR KI++L E+L D+P LE
Sbjct: 125 WQKEVASTLR--VPLIEVDGHNVVPARSVSDKQEYAARTLRPKIHRLSSEFLEDFPRLE- 181
Query: 197 PIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLKNY 256
P+ +DW S+ ++ LR V + GE AA L F+ L Y
Sbjct: 182 PLVCSASPADPVDWHSLRSS-LRMDETVSPVALV-PGESAAHAALSA----FVDHGLHGY 235
Query: 257 PTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVRRELAD 316
RN+P+ A S LS + HFG ++ QR AL + K +A+ +LEE+IVRREL+D
Sbjct: 236 AERRNDPVA-EATSRLSAFFHFGHLAPQRAALAVAGSGKGEGQAV--YLEEVIVRRELSD 292
Query: 317 NFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPV 365
NFC Y YDSL GA WA K+L +H SD R +Y+ E+FE A+T P+
Sbjct: 293 NFCLYNIRYDSLHGAPNWALKTLDEHRSDPRPFLYSHEEFEAARTHSPL 341
>gi|325947635|gb|ADZ46042.1| CPD photolyase, partial [Dunaliella tertiolecta]
Length = 236
Score = 226 bits (576), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 118/220 (53%), Positives = 150/220 (68%), Gaps = 12/220 (5%)
Query: 154 VDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQPIEKW---------TGT 204
VDAHNVVPVWVAS+K E A+T+R K++K LPE+L +YP L Q W G
Sbjct: 1 VDAHNVVPVWVASDKRETGARTIRPKVHKNLPEFLREYPALPQAPTAWPSSLSRQPDNGP 60
Query: 205 RQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLT-KRLKNYPTDRNNP 263
S+DWD++IA L++G+ VPE+ W + GE A+ L+G +GFLT RL Y RN+P
Sbjct: 61 SSSLDWDALIAEALQRGSSVPEVHWVKPGETASKLALEGP-EGFLTPSRLAQYSAKRNDP 119
Query: 264 LKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVRRELADNFCFYQP 323
+ALS LSPYLHFGQ+ AQR AL A K R EA+D FLEEL+VRRELADNFC Y P
Sbjct: 120 -SAKALSNLSPYLHFGQLLAQRIALSASKHRAKYKEAVDGFLEELVVRRELADNFCEYTP 178
Query: 324 NYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTAD 363
NYDSL A EWA++SL H +DKRE +Y+++Q E+ +T D
Sbjct: 179 NYDSLDCAAEWAKESLNVHRTDKREKLYSRDQLEQGRTHD 218
>gi|189424834|ref|YP_001952011.1| deoxyribodipyrimidine photolyase [Geobacter lovleyi SZ]
gi|189421093|gb|ACD95491.1| deoxyribodipyrimidine photolyase [Geobacter lovleyi SZ]
Length = 447
Score = 226 bits (575), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 138/335 (41%), Positives = 187/335 (55%), Gaps = 11/335 (3%)
Query: 29 GPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRL 88
GPVVYWM R+QRV DNW L HA A + + V F L D FLGA RQ GFML+GL
Sbjct: 18 GPVVYWMSREQRVADNWGLYHAQQLALERQAALLVVFILADGFLGATLRQYGFMLQGLEQ 77
Query: 89 LQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICNRVSDS 148
+ R ++ I F L +GE ++ F+ + +V DF PLR R+ D + + +
Sbjct: 78 VARKLD-GLNIPFLLLEGEPRHSMLQFIAQEQTGCVVCDFDPLRIKRQWFDGVAAAATVA 136
Query: 149 VTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQPIEKWTGTRQSI 208
V EVD HN+VP +AS K E+ A TLR K+ ++LPE+L+ P + Q W T
Sbjct: 137 VL--EVDGHNIVPCRIASVKREFGAYTLRPKLRRVLPEFLVSIPQVVQHPFAWKKTVAIP 194
Query: 209 DWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRA 268
D + + L+ A V + GE AA E L F+ + L Y + RN+P
Sbjct: 195 DTEQV-QIRLKPDAGVGVVPGFRPGEQAAFEALAD----FIAQGLNGYASRRNDP-TVHG 248
Query: 269 LSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVRRELADNFCFYQPNYDSL 328
SGLSP+LHFG +S QR AL A + E ++ LEELIVRREL+DNFC Y +YD+L
Sbjct: 249 QSGLSPWLHFGHLSPQRIALAV--ATQGDSEDVEAMLEELIVRRELSDNFCLYCASYDTL 306
Query: 329 KGAWEWARKSLKDHASDKREHIYTKEQFEKAQTAD 363
A +WA ++L+ H D R YT+ +FE+A T D
Sbjct: 307 DAAPDWAHRTLEKHRHDPRRFCYTQHEFEQAATHD 341
>gi|78186406|ref|YP_374449.1| DNA photolyase, class 2 [Chlorobium luteolum DSM 273]
gi|78166308|gb|ABB23406.1| Deoxyribodipyrimidine photo-lyase type II [Chlorobium luteolum DSM
273]
Length = 495
Score = 224 bits (571), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 157/388 (40%), Positives = 200/388 (51%), Gaps = 66/388 (17%)
Query: 29 GPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRL 88
GPV+YWM RDQRV N AL +A +A + P+ VAF L F+GA RQ FMLRGL
Sbjct: 18 GPVIYWMSRDQRVEQNRALHYARFRAVADGAPLIVAFTLSPSFIGATFRQYDFMLRGLME 77
Query: 89 LQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICNRVSDS 148
++R + E +I F L +G+ + I F G+ +VTD+SPLR RR K +
Sbjct: 78 VERRLRE-LEIGFVLLEGDPAEAIVRFRESIGSGCVVTDYSPLRISRRWKATAAAAL--P 134
Query: 149 VTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQ--PIEKWTGTRQ 206
V EVDAHN+VP +AS K EYSA+T R K+N+LL E+LI P +E+ E W T
Sbjct: 135 VLFIEVDAHNIVPCLMASPKQEYSARTFRPKVNRLLGEFLIALPPVERVPASEPWAPT-- 192
Query: 207 SIDWDSIIA--AVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPL 264
DW+ + A V R V + GE AA+ L + F+ +RL Y RN+P
Sbjct: 193 --DWERVRARLPVERPAGTVRH---PQPGEAAAIRHL----ETFIRERLAWYGERRNDP- 242
Query: 265 KPRALSGLSPYLHFGQISAQRCAL----------------------------EARKARKL 296
A SGLSPYLHFG I A A+ E R+A +
Sbjct: 243 NADATSGLSPYLHFGHIWAGTVAIAVRGVMNVVNSPSPEGWEAIGVVNSTSPEGREASGV 302
Query: 297 C----PEAID---------------TFLEELIVRRELADNFCFYQPNYDSLKGAWEWARK 337
PE + FLEELIVRREL+DN+C Y YDS G WA+
Sbjct: 303 VNSTSPEGWEATGVVNSPSPEESKAAFLEELIVRRELSDNYCAYNSRYDSFDGLPIWAQD 362
Query: 338 SLKDHASDKREHIYTKEQFEKAQTADPV 365
SL HA+D RE IYT E+FEKA T DP+
Sbjct: 363 SLARHAADLREAIYTPEEFEKAVTHDPL 390
>gi|312881041|ref|ZP_07740841.1| Deoxyribodipyrimidine photo-lyase type II [Aminomonas paucivorans
DSM 12260]
gi|310784332|gb|EFQ24730.1| Deoxyribodipyrimidine photo-lyase type II [Aminomonas paucivorans
DSM 12260]
Length = 464
Score = 222 bits (566), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 147/357 (41%), Positives = 190/357 (53%), Gaps = 20/357 (5%)
Query: 13 PGRIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFL 72
P RI L++ ++ GPV+YWM R+QR RD+W L A + A + VP+A F L FL
Sbjct: 15 PERITCLRRAP--RREGPVLYWMGREQRARDHWGLAAAQELAAERRVPLACIFTLSPTFL 72
Query: 73 GAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLR 132
GA R F+LRGLR R + I FL +G+ + F +L VTDF PLR
Sbjct: 73 GAPLRAYAFLLRGLRETARELAAR-DIPLFLLRGDPPEEAARFAIRHRVALTVTDFDPLR 131
Query: 133 EIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYP 192
R + R T EVDA NVVP S K E+SA TLR K+ LL +L P
Sbjct: 132 VRRGWTEAFLERTEG--TALEVDARNVVPCRFVSPKREWSAATLRRKLRPLLDRFL---P 186
Query: 193 MLEQPIE----KWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGF 248
L P+E WT T WD + VPE G A L + F
Sbjct: 187 FLPPPLETHPVPWTDT-PPPSWDPLDLLASGSFEGVPESP-LPPGSAAGQARL----EAF 240
Query: 249 LTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEEL 308
L + L Y DRN+PL+ SGLSPYLHFGQIS QR A E +A PE + FLEEL
Sbjct: 241 LREGLPRYARDRNDPLR-EGQSGLSPYLHFGQISPQRAAWEVLRA-DAPPEDREAFLEEL 298
Query: 309 IVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPV 365
+VR ELA+NFC + P YD+++ +WARK+L HASD+R +Y+ + E+ +T DP+
Sbjct: 299 VVRGELAENFCLHTPGYDTVEAFPDWARKTLAAHASDRRPALYSLRELEEGRTHDPL 355
>gi|256828229|ref|YP_003156957.1| deoxyribodipyrimidine photo-lyase [Desulfomicrobium baculatum DSM
4028]
gi|256577405|gb|ACU88541.1| Deoxyribodipyrimidine photo-lyase [Desulfomicrobium baculatum DSM
4028]
Length = 452
Score = 221 bits (564), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 141/355 (39%), Positives = 196/355 (55%), Gaps = 14/355 (3%)
Query: 11 VQPGRIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQ 70
+ P R+ +L+ L + GPV+YWM RD R DNW L +A QA K+ PVAV F L
Sbjct: 1 MNPRRVNMLRNAPLGQ--GPVLYWMHRDFRAADNWGLTYARLQALKSGQPVAVIFCLAPD 58
Query: 71 FLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSP 130
F A A F+L GL + + I FF G + NF R ASL+VTDF P
Sbjct: 59 FAEATAVHFNFLLDGLTKTAQTLRRQ-NIPFFALSGIPGLEVANFARTLKASLVVTDFDP 117
Query: 131 LREIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLID 190
LR + + + + +V HEVD+ N+VP V S++ E+ A+TLR KI +LL E+L +
Sbjct: 118 LRIKAQWHKDLLSAWNQAV--HEVDSRNIVPARVVSDRREFMARTLRPKIKRLLGEFLDE 175
Query: 191 YPMLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLT 250
+P+L W + D+ S+ + G + E GE A ++L FL
Sbjct: 176 FPVLPMHPHPWPTAVSAPDFSSLRHKIRDDGRR--QALRVEPGEQPARDLLCH----FLQ 229
Query: 251 KRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIV 310
+L Y +RN+P + S LS +LHFG +SAQR ALE +A L E +D FL+ELIV
Sbjct: 230 NKLPVY-ANRNDPNQ-DVCSSLSAHLHFGMLSAQRAALET-QACGLAGENVDAFLDELIV 286
Query: 311 RRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPV 365
RREL+DNFC + P YD+ +G WA++SL H D R IY+ E+ E A+T DP+
Sbjct: 287 RRELSDNFCLHTPGYDTEEGFPAWAKESLHKHLRDPRPVIYSPEELEAARTHDPL 341
>gi|218887026|ref|YP_002436347.1| deoxyribodipyrimidine photo-lyase [Desulfovibrio vulgaris str.
'Miyazaki F']
gi|218757980|gb|ACL08879.1| Deoxyribodipyrimidine photo-lyase [Desulfovibrio vulgaris str.
'Miyazaki F']
Length = 494
Score = 219 bits (559), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 148/377 (39%), Positives = 202/377 (53%), Gaps = 30/377 (7%)
Query: 8 STAVQPGRIRVLKQGSLDKK-------RGPVVYWMFRDQRVRDNWALIHAVDQANKNNVP 60
S+ V P R+ + G RGPV+YWM R+ R RDNWAL+HA +A + P
Sbjct: 13 SSVVDPRRVVGMHGGPAAHSAPGARPGRGPVLYWMHREHRARDNWALLHAHAEAARLGAP 72
Query: 61 VAVAFNLFDQFLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECG 120
+AV + L + FLGA RQ GF+LRG+ QR++ I + +G + + + R
Sbjct: 73 LAVVWCLANSFLGATIRQFGFLLRGMEETQRHLAAA-GIPLVVLRGNPPEEVVRYARSAN 131
Query: 121 ASLLVTDFSPLREIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKI 180
A+L+VTDF LR R ++ ++HEVD NVVP VAS K EY+A+TLR KI
Sbjct: 132 AALVVTDFDVLRLKRTWLASAARGLAGVCSLHEVDGRNVVPCRVASPKREYAARTLRPKI 191
Query: 181 NKLLPEYLIDYPML------------EQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIG 228
++LLPE+L P L P W R ++ D +A V +P +
Sbjct: 192 HRLLPEFLTPIPALPPASSVSGASSVPVPDVDWASLRDNLAVDRTVAEV----GPLPGMP 247
Query: 229 WCESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCAL 288
GEDAA L D F+ RL Y RN+P +SGLSPYLHFG +SAQR AL
Sbjct: 248 DIAPGEDAARAAL----DDFIHARLHRYHL-RNDP-NAHGVSGLSPYLHFGMLSAQRAAL 301
Query: 289 EARKARKLCPEAIDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKRE 348
A+ + + +FLEELIVRRELADNFC + +YD++ +WA +L H D R
Sbjct: 302 AAQAHLEAPDDCRASFLEELIVRRELADNFCLHAQDYDAVTCFPDWALATLDKHRHDPRP 361
Query: 349 HIYTKEQFEKAQTADPV 365
+Y + Q A+TADP+
Sbjct: 362 ALYDEAQLAAARTADPL 378
>gi|256071674|ref|XP_002572164.1| DNA photolyase [Schistosoma mansoni]
gi|353229929|emb|CCD76100.1| putative DNA photolyase [Schistosoma mansoni]
Length = 490
Score = 217 bits (553), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 133/349 (38%), Positives = 195/349 (55%), Gaps = 35/349 (10%)
Query: 28 RGPVVYWMFRDQRVRDNWA-----LIHAVDQANKNNVPVAVAFNLFDQFLGAKAR--QLG 80
+G V+YWM RDQRV+ N + V +K + +A ++ G K R
Sbjct: 54 QGGVLYWMSRDQRVQGNAIQGYTFFVFLVLLISKEIIFIAQPEDISS---GCKHRWSDEN 110
Query: 81 FMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDK 140
+ +++N FL++ ++ + + LVTDF PLR R K
Sbjct: 111 ALFNQTDRIEKN---------FLYETYVAKSVVDLAKLLNVGCLVTDFCPLRAPRSWVKK 161
Query: 141 ICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQPIEK 200
+ + + D++ EVDAHN+VPVW SEK EYSA+T+R K+ + P++L D+P PI K
Sbjct: 162 VTDELPDNIPFCEVDAHNIVPVWCGSEKREYSARTIRSKLFQQSPKFLTDFP----PIIK 217
Query: 201 WTGTRQ------SIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLK 254
T + + ++W+SI++ + + P + W G A +EVL F++KRLK
Sbjct: 218 HTCSDKITVLPPPVNWESILSDYVGDKSVKP-VDWAVPGTQAGLEVLYE----FISKRLK 272
Query: 255 NYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVRREL 314
+ RN+P P ALSGLSP+LHFGQI+ QR LE +K + D F+EE RREL
Sbjct: 273 KFDPHRNDPAHP-ALSGLSPWLHFGQIAPQRAVLEVVAVQKHFGRSADIFIEECFNRREL 331
Query: 315 ADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTAD 363
A+NFCF+ P YDS+KGA++WAR+SL H++DKR+ Y+K Q E AQT D
Sbjct: 332 AENFCFHTPFYDSIKGAYDWARESLMTHSTDKRDPAYSKTQMETAQTGD 380
>gi|358335722|dbj|GAA29131.2| deoxyribodipyrimidine photo-lyase [Clonorchis sinensis]
Length = 518
Score = 216 bits (551), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 130/387 (33%), Positives = 201/387 (51%), Gaps = 43/387 (11%)
Query: 14 GRIRVLK---QGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQ 70
R+R LK + + G V+YWM RDQRV+DNWA ++A A K VP+ V F L
Sbjct: 30 ARVRQLKGPDEFPAEANSGGVLYWMIRDQRVQDNWAFLYAQRLALKFQVPLHVCFCLVPC 89
Query: 71 FLGAKARQLGFMLRGLRLLQ---RNIEETFQILFF------------------------- 102
+ R FM+ GL ++ R + F +L
Sbjct: 90 YQADTLRHFSFMVGGLTQVEQECRALNIHFHLLNIADGLSPSTRSQGSKHRWAEEDSQAL 149
Query: 103 ----LFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICNRVSDSVTIHEVDAHN 158
L+ + + + + V+ +VTDFSPLR + + ++ + +VDAHN
Sbjct: 150 QPPDLYGSQVAEQLKSLVQTLNIGCIVTDFSPLRAPTMWIEHVRTQLPPQLPFCQVDAHN 209
Query: 159 VVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYP-MLEQPIEKWTGT-RQSIDWDSIIAA 216
+VPVW S+K E+SA+T+R K+ + ++L ++P +++ P T R++++W+ I
Sbjct: 210 IVPVWCGSDKCEFSARTIRPKLYEQTGQFLTEFPPLIKHPFSCSAPTCRKTVNWNKIREN 269
Query: 217 VLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYL 276
V + W + G AA VL+ F+ +RL+++ RN+P P ALSGLSP+
Sbjct: 270 YW-GDCTVQPVDWAKPGTAAAFYVLRS----FIDERLRDFDAHRNDPANP-ALSGLSPWF 323
Query: 277 HFGQISAQRCALEARKARKLCPEAIDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWAR 336
HFGQ++ QR LE + ++D F+EE RRELADNFCF+ P YD L+GA +WA+
Sbjct: 324 HFGQMAPQRAVLEVAALQHKYGRSVDVFIEEAFNRRELADNFCFHTPLYDRLQGARQWAQ 383
Query: 337 KSLKDHASDKREHIYTKEQFEKAQTAD 363
+L HA DKR+ +T+ Q E + T D
Sbjct: 384 DTLHKHAEDKRDVAFTRAQLESSGTTD 410
>gi|386391744|ref|ZP_10076525.1| deoxyribodipyrimidine photolyase [Desulfovibrio sp. U5L]
gi|385732622|gb|EIG52820.1| deoxyribodipyrimidine photolyase [Desulfovibrio sp. U5L]
Length = 462
Score = 214 bits (546), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 147/352 (41%), Positives = 190/352 (53%), Gaps = 11/352 (3%)
Query: 11 VQPGRIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQ 70
V P RIR L G K GPVV WM RDQR DNWAL+HA A P+ F L
Sbjct: 3 VHPARIRPL--GFNPPKSGPVVLWMGRDQRADDNWALLHAAALAKAAGAPLLALFALPPD 60
Query: 71 FLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSP 130
AR F+LRGL ++ + + I L G+ +P F+R A + VTDF P
Sbjct: 61 VPPGTARHADFLLRGLGTVEAALRD-HGIPLVLLPGDPAVAVPAFLRRVRAGVCVTDFDP 119
Query: 131 LREIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLID 190
LR R ++ + + EVDAHNVVP + AS K EY+A T R KI KLLPE+L
Sbjct: 120 LRPGRAAREAVAATPAWDGAFFEVDAHNVVPAFAASPKREYAAATFRPKILKLLPEFLEP 179
Query: 191 YPMLEQ-PIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFL 249
+P L P G +DW++ A ++ A P G G +AA E L FL
Sbjct: 180 FPDLPAFPAGNLAGF-APVDWEAARAGLVLDPAVAPVAG-ITPGPEAAREALAD----FL 233
Query: 250 TKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELI 309
RL Y RN+P A S LSP+LHFG ++ QR AL+A A+K P + FLEEL+
Sbjct: 234 ADRLPVYADRRNDP-NAGATSTLSPWLHFGHLAPQRAALDALAAKKRAPAGAEAFLEELV 292
Query: 310 VRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQT 361
VRRELADN+C ++P YD+ WARK+L HA+D R ++Y+ +FE A T
Sbjct: 293 VRRELADNYCLHEPAYDTFAVLPAWARKTLLAHAADPRPYVYSAREFEAAAT 344
>gi|256077044|ref|XP_002574818.1| DNA photolyase [Schistosoma mansoni]
gi|350646465|emb|CCD58864.1| DNA photolyase, putative [Schistosoma mansoni]
Length = 533
Score = 214 bits (545), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 131/381 (34%), Positives = 196/381 (51%), Gaps = 51/381 (13%)
Query: 18 VLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKAR 77
+LK G+ K G V+YWM RDQRV+DNWA + A A K VP+ V F L +F R
Sbjct: 62 ILKSGN---KMG-VLYWMIRDQRVQDNWAFLFAQRLALKFKVPLHVCFCLVPKFQAETLR 117
Query: 78 QLGFMLRGLRLLQRNIEET---FQILFFLFQGEAED------------------------ 110
FM+ GL+ +++ E F I + + +
Sbjct: 118 HYTFMVEGLKEVEKECRELCIPFHITSAITNSSSNNQPVKTGVKRKLPESVNDYCHADTV 177
Query: 111 --NIPNFVRECGASLLVTDFSPLREIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEK 168
++ + ++ S ++TDF PLRE ++ + +++ +VDAHNVVPVW AS+
Sbjct: 178 AQSVLSLIQSVNISCIITDFFPLREPTAWIKQLAELLPENIPFCQVDAHNVVPVWHASDH 237
Query: 169 LEYSAKTLRGKI----NKLLPEY--LIDYPMLEQPIEKWTGTRQSIDWDSIIAAVLRKGA 222
LEY+A+T+R K+ N L+ E+ LI +P Q + IDW+ I+
Sbjct: 238 LEYAARTIRPKLHQKANNLMTEFPPLIRHPYCHQ------SSLSPIDWNYWISK-FSGDL 290
Query: 223 EVPEIGWCESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQIS 282
V + W G + L F+ +RL Y RN+P K LS LSP+ H+GQI+
Sbjct: 291 SVKPVDWAIPGTSGGLTTLHT----FIYERLPKYADCRNDPTK-NCLSNLSPWFHYGQIA 345
Query: 283 AQRCALEARKARKLCPEAIDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDH 342
QR +E + R +++D F+EE +RREL+DNFC+Y P YDS++GAW+WA+ +L H
Sbjct: 346 PQRAIMEVKLWRHKYKDSVDAFVEEAFIRRELSDNFCYYNPKYDSIEGAWKWAQDTLAQH 405
Query: 343 ASDKREHIYTKEQFEKAQTAD 363
A DKR Y++E A+T D
Sbjct: 406 AHDKRNPSYSEEIMISAETKD 426
>gi|9633937|ref|NP_052016.1| gp127L [Rabbit fibroma virus]
gi|6578656|gb|AAF18010.1|AF170722_128 gp127L [Rabbit fibroma virus]
Length = 445
Score = 211 bits (536), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 124/339 (36%), Positives = 182/339 (53%), Gaps = 23/339 (6%)
Query: 31 VVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQ 90
VVYWM+R+ R+RDNW L +A +A + VP+ V L F +R + F+L GLR ++
Sbjct: 20 VVYWMYREHRIRDNWGLYYAQQKALRYRVPLYVCVCL-TPFHLTTSRHMAFLLEGLREVE 78
Query: 91 RN-IEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICNRVSDSV 149
++ +F F L G +D +P V++ A + DF PLR + + + D
Sbjct: 79 DECVKRSFG--FVLRYGCPKDVLPEEVKKHNARWIFVDFYPLRYPEKDISDVVTALRDVA 136
Query: 150 TIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQ---PIEKWTGTRQ 206
TI +VD+HN+VP W+AS K EYSA+T R KI KLL YL +P + + P++
Sbjct: 137 TIIQVDSHNIVPCWIASLKQEYSARTFRLKIQKLLTTYLTKFPSVIKHPYPVQ------- 189
Query: 207 SIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKP 266
D + +V I +G M L+ FL +L+ Y +N+P
Sbjct: 190 ----DVYVEDFTPTLDDVSPIRGITAGNKGGMRKLRA----FLKHKLRYYHEFKNDP-TV 240
Query: 267 RALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVRRELADNFCFYQPNYD 326
A SGLSP+L +G +SAQR LE PE++ TFL+E++VRREL+DNFC+Y YD
Sbjct: 241 DACSGLSPWLRYGHLSAQRVVLETVAYTSTYPESVATFLDEIVVRRELSDNFCYYNKLYD 300
Query: 327 SLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPV 365
S+ WA ++L DH D R ++Y E A+T DP+
Sbjct: 301 SITSTHPWALRTLDDHRQDLRPYLYDTSSLEHARTHDPL 339
>gi|226479206|emb|CAX73098.1| photorepair [Schistosoma japonicum]
Length = 530
Score = 210 bits (535), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 127/371 (34%), Positives = 190/371 (51%), Gaps = 45/371 (12%)
Query: 25 DKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLR 84
D K G V+YWM RDQRV+DNWA + A A K VP+ V F ++ R FM+
Sbjct: 66 DIKMG-VLYWMIRDQRVQDNWAFLFAQRLALKFKVPLHVCFCFVPKYQAETLRHYTFMIE 124
Query: 85 GLRLLQRNIEET---FQI-----------------------LFFLFQGEAEDNIPNFVRE 118
GL+ +++ E F I + + + +I + ++
Sbjct: 125 GLKEVEKECRELCIPFHITSATSIPDNKLIKTGIKRKLSESINDYYADKVAQSILSVIQS 184
Query: 119 CGASLLVTDFSPLREIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLR- 177
S ++TDFSPLRE + + +++ +VDAHN+VPVW AS+ LEY+A+T+R
Sbjct: 185 ANISCIITDFSPLREPSSWIKGLSEVLPENIPFCQVDAHNIVPVWHASDHLEYAARTIRP 244
Query: 178 ---GKINKLLPEY--LIDYPMLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCES 232
K N L+ E+ LI +P Q IDWD ++ V + W
Sbjct: 245 SLHQKANTLMTEFPPLIKHPCYHQ------YDLPPIDWDYWMSE-FSGDISVKPVDWIIP 297
Query: 233 GEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARK 292
G ++ + L F+ +RL Y RN+P K LS LSP+ H+GQ++ QR +E +
Sbjct: 298 GTNSGLTTLHK----FIHERLSKYADCRNDPTK-NCLSDLSPWFHYGQVAPQRALIEVKL 352
Query: 293 ARKLCPEAIDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYT 352
R +++D F+EE +RREL+DNFC+Y P YDS++GAW+WA+ +L HA DKR Y+
Sbjct: 353 WRHKYKDSVDAFVEEAFIRRELSDNFCYYNPKYDSMEGAWKWAQDTLTQHAHDKRNPSYS 412
Query: 353 KEQFEKAQTAD 363
+E A T D
Sbjct: 413 EETMVSADTKD 423
>gi|347732852|ref|ZP_08865923.1| DNA photolyase family protein [Desulfovibrio sp. A2]
gi|347518328|gb|EGY25502.1| DNA photolyase family protein [Desulfovibrio sp. A2]
Length = 450
Score = 210 bits (534), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 147/341 (43%), Positives = 195/341 (57%), Gaps = 13/341 (3%)
Query: 31 VVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQ 90
++YWM R+ R RDNWAL+HA +A + P+AV + L D FLGA RQ GF+LRG+ +
Sbjct: 1 MLYWMHREHRARDNWALLHAHAEAARLGAPLAVVWCLADTFLGATIRQFGFLLRGMAETE 60
Query: 91 RNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICNRVSDSVT 150
R++ I + +G + + R GASL+VTDF LR R ++
Sbjct: 61 RHLAAA-GIPLVVLRGNPPEEAVRYARAVGASLVVTDFDVLRVKRAWLASAARGLAGFCP 119
Query: 151 IHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQPIE-KWTGTRQSID 209
+HEVD NVVP VAS K EY+A+TLR KI++LL E+L+ P+L +WT +D
Sbjct: 120 LHEVDGRNVVPCRVASPKREYAARTLRPKIHRLLAEFLVPLPVLPPAPPVRWTLPVPEVD 179
Query: 210 WDSI--IAAVLRKGAEV---PEIGWCESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPL 264
W ++ AV R EV P I E GEDAA L F+ RL Y RN+P
Sbjct: 180 WAALRDGLAVDRAVGEVGPLPGIPAVEPGEDAAHAALGD----FVRTRLHRYHL-RNDP- 233
Query: 265 KPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVRRELADNFCFYQPN 324
+SGLSPYLHFG +SAQR AL A+ E D+FLEELIVRRELADNFC + +
Sbjct: 234 NAGGVSGLSPYLHFGMLSAQRAALAAQARGDAPGECRDSFLEELIVRRELADNFCLHAQD 293
Query: 325 YDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPV 365
YD++ +WAR +L H D R +Y + Q A+TADP+
Sbjct: 294 YDAITCFPDWARATLDKHRHDARPALYDEGQLAAARTADPL 334
>gi|294892053|ref|XP_002773871.1| Deoxyribodipyrimidine photo-lyase, putative [Perkinsus marinus ATCC
50983]
gi|239879075|gb|EER05687.1| Deoxyribodipyrimidine photo-lyase, putative [Perkinsus marinus ATCC
50983]
Length = 480
Score = 209 bits (532), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 119/337 (35%), Positives = 181/337 (53%), Gaps = 8/337 (2%)
Query: 35 MFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQRNIE 94
M R+ R DNWAL++A + A + P+ V +NL +LG RQ F + GLR+L +N+
Sbjct: 1 MSREIRSMDNWALLYAQNLALEGKQPLLVVYNLAIGYLGGGLRQHVFKVGGLRVLAKNLR 60
Query: 95 ETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICNRVSD-SVTIHE 153
+ + + + V G S +VTDF+PL+ + +D + +
Sbjct: 61 DKGISFRVDYSKDFPKALSKMVTMLGCSHVVTDFTPLKVNKAWEDAFIKEAERLGIRFDQ 120
Query: 154 VDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQPIEKWTGTRQSIDWDSI 213
VDAHN+VP WVAS+KLEY+A+T+R ++ + Y ++P L + + G I ++
Sbjct: 121 VDAHNIVPCWVASDKLEYAARTIRPRLWRNWDTYSTEFPTLHKHPYHYDGAHFEITSEAC 180
Query: 214 IAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGF-----LTKRLKNYPTDRNNPLKPRA 268
+L + G + G +VL G G K +K Y RN+P K A
Sbjct: 181 FDMLLSDNEQQLLAG-LDHGVKPVTKVLPGEDAGLEHLYTFIKNMKGYSQFRNDPTK-NA 238
Query: 269 LSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVRRELADNFCFYQPNYDSL 328
+S LSPY H+G +S QR +E KA+ + D F+EE +RRELADNFC+Y NYD
Sbjct: 239 ISDLSPYFHYGMVSPQRAVMEVAKAKSIPKPDRDAFIEEAFIRRELADNFCYYNENYDRF 298
Query: 329 KGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPV 365
+G WA+K+L+DH +DKR+++Y+ Q EKA T D +
Sbjct: 299 EGFHNWAQKTLQDHEADKRKYVYSLSQLEKASTHDEL 335
>gi|408685123|gb|AFU77559.1| m127L [Myxoma virus]
Length = 445
Score = 209 bits (532), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 122/355 (34%), Positives = 190/355 (53%), Gaps = 24/355 (6%)
Query: 15 RIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGA 74
R R L + ++ VVYWM+R+ R+RDNW L +A +A ++ VP+ V L F
Sbjct: 5 RSRTLNECE-ERPTSSVVYWMYREHRIRDNWGLYYAQQKAIRHAVPLYVCVCL-TSFHLT 62
Query: 75 KARQLGFMLRGLRLLQRN-IEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLRE 133
+R + F+L GLR ++ ++ +F F + G E +P V++ A + DF PLR
Sbjct: 63 TSRHVTFLLEGLRDVEDECVKRSFG--FVVRYGRPEVVLPEEVKKRNARWVFVDFYPLRV 120
Query: 134 IRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPM 193
+ + + D T+ +VD+HN+VP W+ S K EYSA+T R KI KLL YL +P
Sbjct: 121 PEKDISNVVESLKDVATVIQVDSHNIVPCWITSSKQEYSARTFRLKIQKLLTTYLTKFPN 180
Query: 194 LEQ---PIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLT 250
+ + P++ D + +VP I ++G ++ L+ FL
Sbjct: 181 IGKHPYPVQ-----------DVYVEDYTPVLDDVPPIRDIKAGTKEGLKTLRA----FLK 225
Query: 251 KRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIV 310
L+ Y +N+P RA SGLSP+LH+G +SAQR L+ + P ++ FL+E++V
Sbjct: 226 HTLRYYYAFKNDP-TARACSGLSPWLHYGHLSAQRVVLDTVVYASIYPASVAAFLDEIVV 284
Query: 311 RRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPV 365
RREL+DNFC+Y YDS+ WA ++L +H D R ++Y E A+T DP+
Sbjct: 285 RRELSDNFCYYNKRYDSITSTHPWALRTLDEHRRDTRPYLYDTYSLEHARTHDPL 339
>gi|9633763|ref|NP_051841.1| m127L [Myxoma virus]
gi|6523982|gb|AAF15015.1|AF170726_131 m127L [Myxoma virus]
gi|170664593|gb|ACB28750.1| m127L [Myxoma virus]
gi|170664766|gb|ACB28922.1| m127L [recombinant virus 6918VP60-T2]
gi|301134653|gb|ADK63767.1| m127L [Myxoma virus]
gi|408684620|gb|AFU77059.1| m127L [Myxoma virus]
gi|408684788|gb|AFU77226.1| m127L [Myxoma virus]
gi|408684954|gb|AFU77391.1| m127L [Myxoma virus]
gi|408685293|gb|AFU77728.1| m127L [Myxoma virus]
gi|408685462|gb|AFU77896.1| m127L [Myxoma virus]
gi|408685628|gb|AFU78061.1| m127L [Myxoma virus]
gi|408685796|gb|AFU78228.1| m127L [Myxoma virus]
gi|408686131|gb|AFU78561.1| m127L [Myxoma virus]
gi|408686300|gb|AFU78729.1| m127L [Myxoma virus]
gi|408686468|gb|AFU78896.1| m127L [Myxoma virus]
gi|408686635|gb|AFU79062.1| m127L [Myxoma virus]
gi|408686803|gb|AFU79229.1| m127L [Myxoma virus]
gi|408686971|gb|AFU79396.1| m127L [Myxoma virus]
gi|408687139|gb|AFU79563.1| m127L [Myxoma virus]
gi|408687307|gb|AFU79730.1| m127L [Myxoma virus]
gi|408687475|gb|AFU79897.1| m127L [Myxoma virus]
gi|408687642|gb|AFU80063.1| m127L [Myxoma virus]
gi|408687810|gb|AFU80230.1| m127L [Myxoma virus]
gi|408687978|gb|AFU80397.1| m127L [Myxoma virus]
gi|408688146|gb|AFU80564.1| m127L [Myxoma virus]
gi|408688315|gb|AFU80732.1| m127L [Myxoma virus]
Length = 445
Score = 209 bits (531), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 122/355 (34%), Positives = 190/355 (53%), Gaps = 24/355 (6%)
Query: 15 RIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGA 74
R R L + ++ VVYWM+R+ R+RDNW L +A +A ++ VP+ V L F
Sbjct: 5 RSRTLNECE-ERPTSSVVYWMYREHRIRDNWGLYYAQQKAIRHAVPLYVCVCL-TSFHLT 62
Query: 75 KARQLGFMLRGLRLLQRN-IEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLRE 133
+R + F+L GLR ++ ++ +F F + G E +P V++ A + DF PLR
Sbjct: 63 TSRHVTFLLEGLRDVEDECVKRSFG--FVVRYGRPEVVLPEEVKKRNARWVFVDFYPLRV 120
Query: 134 IRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPM 193
+ + + D T+ +VD+HN+VP W+ S K EYSA+T R KI KLL YL +P
Sbjct: 121 PEKDISNVVESLKDVATVIQVDSHNIVPCWITSSKQEYSARTFRLKIQKLLTTYLTKFPN 180
Query: 194 LEQ---PIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLT 250
+ + P++ D + +VP I ++G ++ L+ FL
Sbjct: 181 IGKHPYPVQ-----------DVYVEDYTPVLDDVPPIRDIKAGTKEGLKTLRA----FLK 225
Query: 251 KRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIV 310
L+ Y +N+P RA SGLSP+LH+G +SAQR L+ + P ++ FL+E++V
Sbjct: 226 HTLRYYYAFKNDP-TARACSGLSPWLHYGHLSAQRVVLDTVVYASIYPASVAAFLDEIVV 284
Query: 311 RRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPV 365
RREL+DNFC+Y YDS+ WA ++L +H D R ++Y E A+T DP+
Sbjct: 285 RRELSDNFCYYNKRYDSITSTHPWALRTLDEHRRDTRPYLYDTYSLEHARTHDPL 339
>gi|156392837|ref|XP_001636254.1| predicted protein [Nematostella vectensis]
gi|156223355|gb|EDO44191.1| predicted protein [Nematostella vectensis]
Length = 382
Score = 206 bits (524), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 115/283 (40%), Positives = 172/283 (60%), Gaps = 8/283 (2%)
Query: 82 MLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKI 141
M++GL+ +++ ++E +I F L G+ +P FV+ G +V DF PLR + + +
Sbjct: 1 MIKGLQEVEKELKEL-EISFHLLLGDPGKVLPEFVKSAGIGGIVVDFCPLRLPTQWVNDV 59
Query: 142 CNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQPIEKW 201
V V + +VDAHN+VP W AS KLEY A+T+R KI+K+L E+L ++P + +
Sbjct: 60 VKAVPKDVPVCQVDAHNIVPCWHASPKLEYGARTIRPKIHKVLTEFLTEFPPVIKHSHVS 119
Query: 202 TGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLKNYPTDRN 261
++ DWD+ + + V E+ W + G + +L + F RLK + + RN
Sbjct: 120 GEKTKTTDWDA-VDTFIEVDRSVGEVDWAKPGTAEGLFML----ESFCKDRLKYFHSSRN 174
Query: 262 NPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVRRELADNFCFY 321
+P K RALS LSP+ H GQIS QR L R R E++++F+EE I+RREL+DNFC+Y
Sbjct: 175 DPTK-RALSNLSPWFHTGQISPQRAILRVRDFRSKFRESVESFIEECIIRRELSDNFCYY 233
Query: 322 -QPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTAD 363
YDS++G EWARK+L DHA DKRE++Y + + EKAQT D
Sbjct: 234 NNEKYDSIEGTNEWARKTLNDHAKDKREYLYARGKLEKAQTHD 276
>gi|340384943|ref|XP_003390970.1| PREDICTED: deoxyribodipyrimidine photo-lyase-like [Amphimedon
queenslandica]
Length = 319
Score = 200 bits (509), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 100/213 (46%), Positives = 139/213 (65%), Gaps = 6/213 (2%)
Query: 153 EVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQPIEKWTGTRQSIDWDS 212
EVDAHN+VPVW+AS+K EY+A+T+R KI+K LPE+L ++P + T +S +W
Sbjct: 2 EVDAHNIVPVWLASDKQEYAARTIRNKIHKFLPEFLTEFPPVTVHTHNSKLTMKSTNWIK 61
Query: 213 IIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGL 272
+ L V E+ W G +A ++VL D F TKRLK + RN+P K +LS L
Sbjct: 62 AKES-LEIDMTVSEVSWATPGTNAGLKVL----DEFCTKRLKFFAAQRNDPNKD-SLSNL 115
Query: 273 SPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVRRELADNFCFYQPNYDSLKGAW 332
SP+ HFGQI QR L+ + E++ ++EE +VRRELADNFC+Y P+YDS+ GA
Sbjct: 116 SPWFHFGQIGVQRTILKVKSYSSKHSESVSAYIEEAVVRRELADNFCYYNPHYDSISGAA 175
Query: 333 EWARKSLKDHASDKREHIYTKEQFEKAQTADPV 365
+WA+ +LK H DKRE+IYT+EQFE + T DP+
Sbjct: 176 QWAQDTLKAHKKDKREYIYTQEQFESSSTHDPL 208
>gi|253761750|ref|XP_002489250.1| hypothetical protein SORBIDRAFT_0012s014620 [Sorghum bicolor]
gi|241947110|gb|EES20255.1| hypothetical protein SORBIDRAFT_0012s014620 [Sorghum bicolor]
Length = 1445
Score = 195 bits (495), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 119/253 (47%), Positives = 153/253 (60%), Gaps = 16/253 (6%)
Query: 6 PPSTA--VQPGRIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAV 63
PP++ V P R+R+L G GPVVYWM RDQR+ DNWAL+HA + A + +
Sbjct: 2 PPASPNLVHPSRVRILHPGG-GHMPGPVVYWMLRDQRLADNWALLHAAELAAASAPAAPL 60
Query: 64 A--FNLFDQ--FLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVREC 119
A F LF + LGA RQLGF+LRGLR L + F L G AE +P VR
Sbjct: 61 AIAFTLFPRPFLLGAHLRQLGFLLRGLRRLAADAHARGLPFFLLEGGPAE--VPALVRRL 118
Query: 120 GASLLVTDFSPLREIRRCKDKICN---RVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTL 176
GAS LVTDFSPLR +R D + + R + + +H+VDAHNVVPVWVA+ KLEYSAKT
Sbjct: 119 GASALVTDFSPLRPVREAFDAVVHELLRDAADMAVHQVDAHNVVPVWVATGKLEYSAKTF 178
Query: 177 RGKINKLLPEYLIDYPMLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDA 236
R K++K++ EYL++YP L + +DWD++I ++ + VPEI WCE GE A
Sbjct: 179 RSKVSKVMDEYLVEYPELPGWTPWCMEQPKDVDWDALINSIFSEAENVPEIDWCEPGEAA 238
Query: 237 AMEVLKGSKDGFL 249
AME S D FL
Sbjct: 239 AME----SVDAFL 247
Score = 87.8 bits (216), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 36/44 (81%), Positives = 41/44 (93%)
Query: 299 EAIDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDH 342
E++D FLEELI+RRELADNFC+YQPNYDSL GAWEWARK+L DH
Sbjct: 241 ESVDAFLEELIIRRELADNFCYYQPNYDSLAGAWEWARKTLMDH 284
>gi|148368871|ref|YP_001257001.1| DNA photolyase [Spodoptera litura granulovirus]
gi|147883384|gb|ABQ51993.1| DNA photolyase [Spodoptera litura granulovirus]
Length = 466
Score = 195 bits (495), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 116/355 (32%), Positives = 182/355 (51%), Gaps = 13/355 (3%)
Query: 11 VQPGRIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQ 70
V R RV+ S + VVYWM RD R+ DNWA ++A A +N P+ V F L
Sbjct: 17 VDINRTRVIHAPSSTLRYTGVVYWMSRDSRIEDNWAFLYAQQIAIQNQAPLHVCFCLVTW 76
Query: 71 FLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSP 130
F A RQ F+L GL+ +Q+ + + F L G + + ++ ++V DF+P
Sbjct: 77 FCNAGMRQFHFLLEGLKFVQQECKR-LNVSFHLLDGSGDQVLLDWCNRNDVDVIVCDFNP 135
Query: 131 LREIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLID 190
+ + + +++ +VDAHN++P W + S + R + L YL
Sbjct: 136 TVKPMEWIHNLKKTLPGHMSLTQVDAHNILPCW--RQLSAPSTHSFRKIAVRKLNRYLTQ 193
Query: 191 YPMLEQPIEKW-TGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFL 249
+P + + + T +DWD+++ + V + W E+G A++ F+
Sbjct: 194 FP--DAKVHPYGTAKFPHVDWDALLQS-RNADTSVEPVTWAEAGYHGAIKTFTK----FV 246
Query: 250 TKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELI 309
R+++Y RN P + S LSP+LHFGQISAQR L + + + IDTF++E
Sbjct: 247 KCRIQSYHELRNKPTEA-VCSNLSPWLHFGQISAQRVILHVKSLTNVKGDNIDTFVDECF 305
Query: 310 VRRELADNFCFYQPNYDSLKG-AWEWARKSLKDHASDKREHIYTKEQFEKAQTAD 363
+RRELADNFCFY YDS++ A WA +LK H D+R+++Y+ + FE A T D
Sbjct: 306 IRRELADNFCFYTKRYDSIEASAPNWALITLKAHEKDRRQYVYSLKVFENADTHD 360
>gi|219118604|ref|XP_002180071.1| class II CPD photolyase [Phaeodactylum tricornutum CCAP 1055/1]
gi|217408328|gb|EEC48262.1| class II CPD photolyase [Phaeodactylum tricornutum CCAP 1055/1]
Length = 511
Score = 191 bits (484), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 132/380 (34%), Positives = 206/380 (54%), Gaps = 45/380 (11%)
Query: 15 RIRVLKQGSLDKKRG-PVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNL------ 67
R RVL + K G VVYWM RD R DNWAL+ A D A +++VP+ V + L
Sbjct: 5 RTRVLTSEGTEPKEGQSVVYWMQRDVRSVDNWALLWARDLAMQHDVPLHVVYALPPPASS 64
Query: 68 ----FDQFLGAKARQL-------GFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFV 116
D+ L QL F+L GL + + ++E +I ++ ++ + + V
Sbjct: 65 DGSDNDRDLPPALIQLPMTKRHGAFLLGGLECVYKELKE-MKIPLYVCLPDSHEKVGETV 123
Query: 117 REC-----GASLLVTDFSPLREIRRCKDKICNRVSDS--VTIHEVDAHNVVPVWVASEKL 169
E A ++V+DFSP+RE R+ + + + V ++VDAHN+VPVW A++K
Sbjct: 124 CEAILHKYKAKIVVSDFSPIREYRQWMELQAVPILEEAKVPFYQVDAHNIVPVWTATDKR 183
Query: 170 EYSAKTLRGKINKLLPEYLIDYPMLEQPIEKWTGTRQSID---WDSI-IAAVLRKGAEVP 225
+ A+TLR +I+K+ +YL DYP L+ G S+D +D + + L+ V
Sbjct: 184 QVGARTLRPRIHKVYNDYLQDYPDLK-------GNSHSVDQPKFDRVEYESFLQMDESVE 236
Query: 226 EIGWCESGEDAAMEVLKGSKDGFLTKR-LKNYPTDRNNPLKPRALSGLSPYLHFGQISAQ 284
+ W + G +A M+ + F +K LK + RN+P++ S +SP+++ G IS Q
Sbjct: 237 SVDWAQPGTEAGMKQFE-----FFSKNGLKIFHEQRNDPVQKHVCSDMSPWINHGHISFQ 291
Query: 285 RCALEARKARKLCPEAIDTFLEELIVRRELADNFCFYQPN-YDSLKGAWEWARKSLKDHA 343
R AL + K A F+EE ++RREL+DN +Y PN YDSL+ A WAR+SL+ HA
Sbjct: 292 RLALNVKALNKHANGAA-AFIEEGVIRRELSDNMLYYSPNDYDSLETAAGWARESLQLHA 350
Query: 344 SDKREHIYTKEQFEKAQTAD 363
SD+RE +Y+ + E+ +T D
Sbjct: 351 SDEREFVYSLSELEEGRTHD 370
>gi|293652309|gb|ADE60793.1| CPD photolyase [Chrysodeixis chalcites]
Length = 237
Score = 186 bits (473), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 102/204 (50%), Positives = 130/204 (63%), Gaps = 6/204 (2%)
Query: 160 VPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQPIEKWTGTRQSIDWDSIIAAVLR 219
VP WVASEK EYSA+T+R KIN L EYL ++P + + + IDWD I +
Sbjct: 5 VPCWVASEKQEYSARTIRNKINSKLDEYLTEFPPVIKHPYTAKFDPEPIDWDEAIVS-RE 63
Query: 220 KGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFG 279
V + W G D A+++LK FL RLK + T RN+P K ALS LSP+ HFG
Sbjct: 64 ADKNVGPVAWARPGYDEAVKMLKS----FLENRLKVFATKRNDPTKD-ALSNLSPWFHFG 118
Query: 280 QISAQRCALEARKARKLCPEAIDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSL 339
QIS QR AL ++ + E+++ FLEE IVRRELADNFCFY +YDS+KGA +WA+K+L
Sbjct: 119 QISVQRVALCVQEHKSKYTESVNAFLEEAIVRRELADNFCFYCEHYDSIKGASQWAQKTL 178
Query: 340 KDHASDKREHIYTKEQFEKAQTAD 363
DH DKR HIYT EQ K++T D
Sbjct: 179 DDHRKDKRTHIYTLEQLAKSETHD 202
>gi|237837047|ref|XP_002367821.1| DNA photolyase, putative [Toxoplasma gondii ME49]
gi|211965485|gb|EEB00681.1| DNA photolyase, putative [Toxoplasma gondii ME49]
Length = 631
Score = 184 bits (467), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 133/370 (35%), Positives = 197/370 (53%), Gaps = 29/370 (7%)
Query: 15 RIRVLKQG-SLDKKRGPVVY-WMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQF- 71
R+R+L +G K G VV ++ RD RV+DNWAL+ A + A N P+ V L
Sbjct: 58 RVRLLTEGIQKPKADGKVVICYLQRDMRVQDNWALLLAQEAARSLNKPLVVIHLLVPGLA 117
Query: 72 LGAKARQLGFMLRGLRLLQRNIEETFQILFFLF-------QG---EAEDNIPNFVRECGA 121
R L F + G R ++ ++ + I F L +G EA I
Sbjct: 118 FQPTRRHLSFFMGGAREVETELK-SLNIGFELPIVSKKDPKGRLDEANKKIEEVFDALQP 176
Query: 122 SLLVTDFSPLREIRRCKDKICNRVSDSVT-IHEVDAHNVVPVWVASEKLEYSAKTLRGKI 180
+L V DF+PLR + + + ++ ++ +++VD H VVP WVAS+KLE +A+TLR K+
Sbjct: 177 ALAVCDFNPLRLPTQVVEALTRVYAECLSPLYQVDTHGVVPCWVASDKLETAARTLRPKL 236
Query: 181 NKLLPEYLIDYPMLEQPIEKWTGTRQ-SIDWDSIIAAVLRKGAEVPEIGWCESGEDAAME 239
+L+ E+ +P +++ WT T+ +D D I++ L+ P W + G AA+E
Sbjct: 237 MELVKEFATPFPKVQRMTVPWTHTKLFPLDEDRILSE-LKPDPPEPLDSW-KPGTKAALE 294
Query: 240 VLKGSKDGFLT-KRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARK-----A 293
+L F T K L Y RN+PL S LSPY+HFG IS QRC LE K A
Sbjct: 295 LLHS----FATPKNLAEYGKSRNDPLA-GVQSDLSPYIHFGHISVQRCLLEVSKLKSTAA 349
Query: 294 RKLCPEAIDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTK 353
K E + +F++E++VR +L+DNF F+ P+YD +KGA WA+++L HA DKRE Y
Sbjct: 350 DKTLKEGVMSFIDEVVVRSQLSDNFVFFNPHYDDIKGAPLWAQQTLNIHAKDKREPHYGF 409
Query: 354 EQFEKAQTAD 363
E +T D
Sbjct: 410 AALEAGKTYD 419
>gi|221505029|gb|EEE30683.1| DNA photolyase, putative [Toxoplasma gondii VEG]
Length = 631
Score = 183 bits (464), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 132/370 (35%), Positives = 197/370 (53%), Gaps = 29/370 (7%)
Query: 15 RIRVLKQG-SLDKKRGPVVY-WMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQF- 71
R+R+L +G K G VV ++ RD RV+DNWAL+ A + A N P+ V L
Sbjct: 58 RVRLLTEGIQKPKADGKVVICYLQRDMRVQDNWALLLAQEAARSLNKPLVVIHLLVPGLA 117
Query: 72 LGAKARQLGFMLRGLRLLQRNIEETFQILFFLF-------QG---EAEDNIPNFVRECGA 121
R L F + G R ++ ++ + I F L +G EA I
Sbjct: 118 FQPTRRHLSFFMGGAREVETELK-SLNIGFELPIVSKKDPKGRLDEANKKIEEVFDALQP 176
Query: 122 SLLVTDFSPLREIRRCKDKICNRVSDSVT-IHEVDAHNVVPVWVASEKLEYSAKTLRGKI 180
+L V DF+PLR + + + ++ ++ +++VD H VVP WVAS+KLE +A+TLR K+
Sbjct: 177 ALAVCDFNPLRLPTQVVEALTRVYAECLSPLYQVDTHGVVPCWVASDKLETAARTLRPKL 236
Query: 181 NKLLPEYLIDYPMLEQPIEKWTGTRQ-SIDWDSIIAAVLRKGAEVPEIGWCESGEDAAME 239
+L+ E+ +P +++ WT T+ +D D I++ L+ P W + G AA+E
Sbjct: 237 MELVKEFATPFPKVQRMTVPWTHTKLFPLDEDRILSE-LKPDPPEPLDSW-KPGTKAALE 294
Query: 240 VLKGSKDGFLT-KRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARK-----A 293
+L F T K L Y RN+P+ S LSPY+HFG IS QRC LE K A
Sbjct: 295 LLHS----FATPKNLAEYGKSRNDPVA-GVQSDLSPYIHFGHISVQRCLLEVSKLKSTAA 349
Query: 294 RKLCPEAIDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTK 353
K E + +F++E++VR +L+DNF F+ P+YD +KGA WA+++L HA DKRE Y
Sbjct: 350 DKTLKEGVMSFIDEVVVRSQLSDNFVFFNPHYDDIKGAPLWAQQTLNIHAKDKREPHYGF 409
Query: 354 EQFEKAQTAD 363
E +T D
Sbjct: 410 AALEAGKTYD 419
>gi|221481951|gb|EEE20317.1| DNA photolyase, putative [Toxoplasma gondii GT1]
Length = 631
Score = 183 bits (464), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 132/370 (35%), Positives = 197/370 (53%), Gaps = 29/370 (7%)
Query: 15 RIRVLKQG-SLDKKRGPVVY-WMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQF- 71
R+R+L +G K G VV ++ RD RV+DNWAL+ A + A N P+ V L
Sbjct: 58 RVRLLTEGIQKPKADGKVVICYLQRDMRVQDNWALLLAQEAARSLNKPLVVIHLLVPGLA 117
Query: 72 LGAKARQLGFMLRGLRLLQRNIEETFQILFFLF-------QG---EAEDNIPNFVRECGA 121
R L F + G R ++ ++ + I F L +G EA I
Sbjct: 118 FQPTRRHLSFFMGGAREVETELK-SLNIGFELPIVSKKDPKGRLDEANKKIEEVFDALQP 176
Query: 122 SLLVTDFSPLREIRRCKDKICNRVSDSVT-IHEVDAHNVVPVWVASEKLEYSAKTLRGKI 180
+L V DF+PLR + + + ++ ++ +++VD H VVP WVAS+KLE +A+TLR K+
Sbjct: 177 ALAVCDFNPLRLPTQVVEALTRVYAECLSPLYQVDTHGVVPCWVASDKLETAARTLRPKL 236
Query: 181 NKLLPEYLIDYPMLEQPIEKWTGTRQ-SIDWDSIIAAVLRKGAEVPEIGWCESGEDAAME 239
+L+ E+ +P +++ WT T+ +D D I++ L+ P W + G AA+E
Sbjct: 237 MELVKEFATPFPKVQRMTVPWTHTKLFPLDEDRILSE-LKPDPPEPLDSW-KPGTKAALE 294
Query: 240 VLKGSKDGFLT-KRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARK-----A 293
+L F T K L Y RN+P+ S LSPY+HFG IS QRC LE K A
Sbjct: 295 LLHS----FATPKNLAEYGKSRNDPVA-GVQSDLSPYIHFGHISVQRCLLEVSKLKSTAA 349
Query: 294 RKLCPEAIDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTK 353
K E + +F++E++VR +L+DNF F+ P+YD +KGA WA+++L HA DKRE Y
Sbjct: 350 DKTLKEGVMSFIDEVVVRSQLSDNFVFFNPHYDDIKGAPLWAQQTLNIHAKDKREPHYGF 409
Query: 354 EQFEKAQTAD 363
E +T D
Sbjct: 410 AALEAGKTYD 419
>gi|224002719|ref|XP_002291031.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220972807|gb|EED91138.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 468
Score = 182 bits (463), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 120/344 (34%), Positives = 178/344 (51%), Gaps = 21/344 (6%)
Query: 35 MFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQ-FLGAKARQLGFMLRGLRLLQRNI 93
M RD R DNWAL+ A A + VP+ V + L + R F+L GL+++ +
Sbjct: 1 MLRDVRTVDNWALLFAQSLAVQQKVPLRVVYALPPPPSMALTVRHGTFLLDGLKVVANEL 60
Query: 94 EET---FQILFFLFQGEAEDNIPNFVRECGASLL--VTDFSPLREIRRCKDKICNRV--S 146
+E F IL + E I + L V D PLR R+ ++ +
Sbjct: 61 QEASVPFDILCPSSRSEVGKTIHTHCTDASHDALAVVCDMCPLRYPRQWTEEQAVPLLEG 120
Query: 147 DSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLE---QPIEKWTG 203
D + +++VD HN+VPVW+AS K E A+TLR KI+ + +Y +P + E
Sbjct: 121 DDIPLYQVDTHNIVPVWIASPKREVGARTLRPKIHNVFGDYCCQFPKFQGNAHVKESGAE 180
Query: 204 TRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKR---LKNYPTDR 260
+ +DWD + L VP +G +G AME + F + LKN+ + R
Sbjct: 181 GKGGLDWDD-YESFLNMDHSVPHVGGMNAGHQVAMERF----NNFCSSTQYGLKNFDSLR 235
Query: 261 NNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVRRELADNFCF 320
N+P S LSP+++ G +S QR AL+ R +K ++EE +VRREL+DNF +
Sbjct: 236 NDPNHQSVCSNLSPWINHGHVSFQRLALDIRALKKHT-NGTAAYIEEGVVRRELSDNFVY 294
Query: 321 YQPN-YDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTAD 363
Y P+ YDSL GA +WAR SL HA D+RE++YT ++ EKA+T D
Sbjct: 295 YTPDGYDSLAGAADWARDSLTLHADDERENLYTWKELEKAETHD 338
>gi|312143870|ref|YP_003995316.1| DNA photolyase FAD-binding protein [Halanaerobium hydrogeniformans]
gi|311904521|gb|ADQ14962.1| DNA photolyase FAD-binding protein [Halanaerobium hydrogeniformans]
Length = 458
Score = 182 bits (462), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 136/361 (37%), Positives = 196/361 (54%), Gaps = 24/361 (6%)
Query: 11 VQPGRIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQ 70
+ RI+ + + L+K VVYWM QR+ N AL +A ++ANK N P+ + F +
Sbjct: 3 LNESRIKKINEADLNKA-NYVVYWMQSAQRISYNHALSYAAERANKLNQPLFIFFLIDKD 61
Query: 71 FLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSP 130
F A+ FM GL+ L+ EE I FF+F E +D I + ASL V++ S
Sbjct: 62 FPEAEYGHYEFMFAGLKELKNRFEEK-DINFFIFNYE-DDAIFEQIA-AKASLFVSEKSY 118
Query: 131 LREIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLID 190
L+ +++ K K N + + + V+ + + PV SEK EY+A T+R KINK+ +YL D
Sbjct: 119 LKNLKKWKAKTANLI--KIPFYTVETNVICPVEEVSEKEEYAAYTIRKKINKIREQYLSD 176
Query: 191 YPMLEQPIEKWTGTRQSI------DWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGS 244
Y ++ + + I D D +A + + ++ + + G AA + L
Sbjct: 177 YNEIQPENKTVLKLPEEINKYLIEDLDQYLAEMTFED-KISYKNFFKGGYQAAEQKL--- 232
Query: 245 KDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTF 304
+ FLT ++ +Y RN P S LSPYLHFGQISAQ AL A + K E F
Sbjct: 233 -NEFLTNKIADYGEKRNIPYFDYQ-SDLSPYLHFGQISAQEIALRALENSKEAEE----F 286
Query: 305 LEELIVRRELADNFCFYQPNYD-SLKGAW-EWARKSLKDHASDKREHIYTKEQFEKAQTA 362
LEELIVRREL+ NF +Y NYD SLK +WA KSLK HA+DKR++ Y+ EQ + A+T
Sbjct: 287 LEELIVRRELSFNFVYYNQNYDGSLKDVLPDWAAKSLKKHAADKRDYNYSYEQLKNAETH 346
Query: 363 D 363
D
Sbjct: 347 D 347
>gi|293652305|gb|ADE60791.1| CPD photolyase [Trichoplusia ni]
Length = 233
Score = 181 bits (459), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 99/202 (49%), Positives = 130/202 (64%), Gaps = 8/202 (3%)
Query: 163 WVASEKLEYSAKTLRGKINKLLPEYLIDYP-MLEQPIEKWTGTRQSIDWDSIIAAVLRKG 221
WVAS+K EYSA+T+R KIN L EYL ++P +++ P + IDWD I +
Sbjct: 4 WVASDKQEYSARTIRNKINSKLDEYLTEFPPVIKHPYTA-KFEPEPIDWDEAIVS-READ 61
Query: 222 AEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQI 281
V + W G D A+++LK FL RLK + T RN+P K ALS LSP+ HFGQI
Sbjct: 62 KNVGPVAWARPGYDEAVKMLKS----FLDNRLKVFATKRNDPTKD-ALSNLSPWFHFGQI 116
Query: 282 SAQRCALEARKARKLCPEAIDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKD 341
S QR AL ++ + E+++ FLEE IVRRELADNFCFY +YDS+KGA +WA+K+L D
Sbjct: 117 SVQRVALSVQEHKSKYTESVNAFLEEAIVRRELADNFCFYCEHYDSIKGASQWAQKTLDD 176
Query: 342 HASDKREHIYTKEQFEKAQTAD 363
H DKR HIYT +Q K++T D
Sbjct: 177 HRKDKRTHIYTLDQLAKSETHD 198
>gi|297623532|ref|YP_003704966.1| DNA photolyase FAD-binding protein [Truepera radiovictrix DSM
17093]
gi|297164712|gb|ADI14423.1| DNA photolyase FAD-binding protein [Truepera radiovictrix DSM
17093]
Length = 489
Score = 179 bits (453), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 131/358 (36%), Positives = 186/358 (51%), Gaps = 15/358 (4%)
Query: 9 TAVQPGRIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLF 68
T VQ R++ L L R V+YWM + QR R N AL HA AN N P+ VAF L
Sbjct: 36 TGVQDARVKALNDHDLADGR-YVLYWMQQSQRARFNHALEHAAMWANDLNKPLLVAFGLM 94
Query: 69 DQFLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDF 128
D + A AR F+L GL+ + + E +I F + +G ++ ++ A+LLV D
Sbjct: 95 DDYPEANARHYAFLLEGLQDVAEALAER-RIAFVVQRGRPDEVALRLAQD--AALLVCDR 151
Query: 129 SPLREIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYL 188
LR R ++++ + +V++ VVPV VAS+K E++A+TLR K+ + L YL
Sbjct: 152 GYLRHQRLWRERVAREAR--CRVVQVESDVVVPVEVASDKKEHAARTLRPKLTRHLETYL 209
Query: 189 IDYP--MLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKD 246
D L P + + + A L+ V + G VL+
Sbjct: 210 RDVEEVALRAPSRELGVEGLDLTDPGALLASLKLDTSVAPVRRFRGGTREGERVLRA--- 266
Query: 247 GFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLE 306
FL +R +Y RN P + +S +S YLHFGQIS ALE ++A + + +LE
Sbjct: 267 -FLRERFGDYAATRNQP-QTNNVSHMSKYLHFGQISPVFVALEVQRAG--AGKNAEVYLE 322
Query: 307 ELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADP 364
ELIVRREL NF FY+P+YD WARK+L +H D REH+YT+EQ E A+T DP
Sbjct: 323 ELIVRRELPMNFVFYEPHYDRYDALPAWARKTLDEHRGDAREHLYTREQLEAAETHDP 380
>gi|302336786|ref|YP_003801992.1| DNA photolyase FAD-binding protein [Spirochaeta smaragdinae DSM
11293]
gi|301633971|gb|ADK79398.1| DNA photolyase FAD-binding protein [Spirochaeta smaragdinae DSM
11293]
Length = 453
Score = 177 bits (450), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 130/357 (36%), Positives = 189/357 (52%), Gaps = 15/357 (4%)
Query: 11 VQPGRIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQ 70
+Q R+ +LK+G ++K V+YWM + QR R N AL +A+ +AN+ ++P+ V F +
Sbjct: 2 IQNERLFLLKKGECNEKGAYVLYWMQQSQRSRYNHALEYALGEANRRSLPLLVLFVVSRD 61
Query: 71 FLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSP 130
+LGA R F+L G+ L+ ++ + I F L G+ + F + A+L+V D
Sbjct: 62 YLGAGRRHYRFLLEGIEQLEVDLADR-GIGFLLKIGDPPGIVAEFAAD--AALVVFDTGY 118
Query: 131 LREIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLID 190
R ++R K S + EV++ VVPV AS K EYSA T+R KI LL ++
Sbjct: 119 TR-LQRSWRKAAAAGSFCAPVMEVESDLVVPVRTASGKEEYSAATIRRKITPLLFRFMQP 177
Query: 191 YPMLEQPIEKWTGTRQSIDWDSIIAAVLRKGA--EVPEIGWCESGEDAAMEVLKGSKDGF 248
I+ ++ DS A L + + EV + W G A L D F
Sbjct: 178 LKRQSAKIDSTALAGRADGLDSKAAEELLRFSQPEVEPVSWIHGGSVEAHRRL----DAF 233
Query: 249 LTK-RLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEE 307
+T L+ + +RN+P K LS +SPYLH+GQISA AL +A + + FLEE
Sbjct: 234 ITSGTLERFHEERNDPSK-EGLSCMSPYLHYGQISALEIAL---RASEHPGPGCEAFLEE 289
Query: 308 LIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADP 364
LI+RRELA NF FY YDS + WAR+ L+ H DKRE +Y Q E+A+T DP
Sbjct: 290 LIIRRELAFNFVFYNRFYDSFEALPRWAREDLEAHEGDKREVLYDDAQLEEAKTHDP 346
>gi|397576288|gb|EJK50169.1| hypothetical protein THAOC_30888 [Thalassiosira oceanica]
Length = 627
Score = 177 bits (448), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 126/360 (35%), Positives = 182/360 (50%), Gaps = 35/360 (9%)
Query: 31 VVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNL-----------------FDQFLG 73
+VYWM RD R DN AL+ A A K VP+ V F L + +
Sbjct: 147 IVYWMMRDCRTVDNHALLFAQGLATKYQVPLRVVFTLPPPPSSAPGEGADGSPPKPEDMS 206
Query: 74 AKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVREC----GASLLVTDFS 129
R F+L GL+++ +E L L +R C A LV D S
Sbjct: 207 LTLRHGDFLLDGLKVVAEELEAANVPLDVLQPACRTAVGTETIRYCINRNDALALVCDMS 266
Query: 130 PLREIRR-CKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYL 188
PLR+ R + + + V +++VDAHN+VPVW AS K E A+TLR KIN + +Y
Sbjct: 267 PLRQPRDWIETQTVPHLGQQVPVYQVDAHNIVPVWRASPKREVGARTLRPKINNVFAKYC 326
Query: 189 IDYPML----EQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGS 244
+ EK Q DW+ + + P +G+ +G +AAME +
Sbjct: 327 TQFAEFAGNAHLAAEKVDAENQH-DWEQYRRYLRLDESIEPVVGYV-AGHEAAMERFR-- 382
Query: 245 KDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTF 304
F + +LKN+ + RN+P + S LSP+++ GQ+S QR ALE R +K +
Sbjct: 383 --EFCSTKLKNFDSMRNDPNQ-DVCSNLSPWINHGQVSFQRLALEVRALKKHT-NGTAAY 438
Query: 305 LEELIVRRELADNFCFYQP-NYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTAD 363
+EE +VRREL+DNF +Y P +YDSL+GA +WAR SL+ H++DKRE++YT + E T D
Sbjct: 439 IEEGVVRRELSDNFVYYTPSSYDSLEGAADWARDSLQLHSTDKREYVYTWKVLETGMTHD 498
>gi|294495094|ref|YP_003541587.1| deoxyribodipyrimidine photo-lyase type II [Methanohalophilus mahii
DSM 5219]
gi|292666093|gb|ADE35942.1| Deoxyribodipyrimidine photo-lyase type II [Methanohalophilus mahii
DSM 5219]
Length = 457
Score = 176 bits (446), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 129/341 (37%), Positives = 187/341 (54%), Gaps = 26/341 (7%)
Query: 31 VVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQ 90
V+YWM QRV N AL A+ QANK ++P+ V F L ++ A R FML GL +
Sbjct: 21 VLYWMQSSQRVDYNHALEFAIQQANKMDLPLLVLFCL-TKYPQANLRHYTFMLEGLVQTK 79
Query: 91 RNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICNRVSDSVT 150
+++E+ I F + +G D + F R+ ASLLVTD + R ++ + S S
Sbjct: 80 KSLEK-LGIQFVMLKGNPVDVVHEFARD--ASLLVTDQDYQKLQRGWRENLA--ASISCP 134
Query: 151 IHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQPIEKWTGTRQSIDW 210
+V+++ +VPV S+K E+SA TLR KI+K L E++ +P + + ID
Sbjct: 135 FAQVESNVIVPVENVSDKEEWSAATLRRKIHKHLDEFV--HPF---ELSALANSSLEIDQ 189
Query: 211 DSI-------IAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNP 263
DS+ I + V + G A E L F+ RL +Y RN+P
Sbjct: 190 DSLDLNDFEQILNSMDIDRSVKPSPRYKGGIHQAREKLSD----FIAHRLGDYDEKRNDP 245
Query: 264 LKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVRRELADNFCFYQP 323
LSG+SPYLHFGQIS AL+ + A+K A ++EEL+VRRELA NF +Y
Sbjct: 246 -NLDFLSGMSPYLHFGQISPLEIALKVQDAKKGGSTA---YMEELVVRRELAMNFVYYDK 301
Query: 324 NYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADP 364
+YDSL +WA+K+L +H D R++IYT+E+FE+A+T DP
Sbjct: 302 DYDSLDCLPDWAKKTLAEHRDDFRQYIYTQEEFEQARTHDP 342
>gi|310779936|ref|YP_003968268.1| Deoxyribodipyrimidine photo-lyase type II [Ilyobacter polytropus
DSM 2926]
gi|309749259|gb|ADO83920.1| Deoxyribodipyrimidine photo-lyase type II [Ilyobacter polytropus
DSM 2926]
Length = 459
Score = 176 bits (445), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 123/365 (33%), Positives = 195/365 (53%), Gaps = 31/365 (8%)
Query: 15 RIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGA 74
R +++ + ++K V+YWM QR R N L + V +AN+ P+ V FNL D + A
Sbjct: 4 RFKLINEKKIEKNGEYVLYWMQGSQRTRYNHCLEYGVLKANEMKKPLIVIFNLIDGYPDA 63
Query: 75 KARQLGFMLRGLR-----LLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFS 129
R FML GL+ L R IE F++ G+ NI + AS+L+ D
Sbjct: 64 NERHYSFMLEGLKDVKKALFARKIE------FYISHGDMAKNIVKASEK--ASILICDKG 115
Query: 130 PLREIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLI 189
+ ++ + +I ++V E+D + VVPV AS+K EY+A+T+R KI + L E+L
Sbjct: 116 YMNIQKKWRAEISSKVKCQAV--EIDTNLVVPVEEASQKEEYAARTIREKIKRQLDEFLY 173
Query: 190 DYPMLEQPIEK-------WTGTRQSIDWDSI--IAAVLRKGAEVPEIGWCESGEDAAMEV 240
D+ ++ + K + + D D++ + ++ V + + GE A +
Sbjct: 174 DFEKIKYSVNKSYNKKFCFYENNLNKDLDNVGKVLDNMKLNRSVSKSSFFYGGEIEAEKR 233
Query: 241 LKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKAR-KLCPE 299
L D F+ +L++Y ++P + +S LSPYLHFG IS ALE K + + E
Sbjct: 234 L----DEFIEIKLESYSYKNSDPGEDN-VSKLSPYLHFGNISPVEIALELLKMKNETNSE 288
Query: 300 AIDTFLEELIVRRELADNFCFYQPNYDSLKG-AWEWARKSLKDHASDKREHIYTKEQFEK 358
+I+ FLEELI+RREL+ NF +Y YD G ++ WA ++L+ H SDKRE+IY+ E+ EK
Sbjct: 289 SIEAFLEELIIRRELSHNFIYYNERYDKWDGISYSWAYETLEKHRSDKRENIYSLEKLEK 348
Query: 359 AQTAD 363
+T D
Sbjct: 349 YKTHD 353
>gi|218780190|ref|YP_002431508.1| deoxyribodipyrimidine photo-lyase [Desulfatibacillum alkenivorans
AK-01]
gi|218761574|gb|ACL04040.1| Deoxyribodipyrimidine photo-lyase [Desulfatibacillum alkenivorans
AK-01]
Length = 456
Score = 175 bits (444), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 129/360 (35%), Positives = 185/360 (51%), Gaps = 26/360 (7%)
Query: 14 GRIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLG 73
RIR L + +K V+YWM + QR + N AL A+ +AN +VPV V F L +
Sbjct: 7 ARIRRLNERP-GQKGAYVLYWMQQSQRAKHNLALEFAISRANDLDVPVVVVFGLTVNYPE 65
Query: 74 AKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECG--ASLLVTDFSPL 131
A R FML GL QR + E L L E++ P + G A+L+VTD +
Sbjct: 66 ANYRHYLFMLEGLAETQRQLRERGIPLVVL-----ENSPPLAALDLGKKAALIVTDKGYM 120
Query: 132 REIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLI-- 189
R R + ++ + S V E D +VPV +AS+K E++A+T+R KIN+ L +L+
Sbjct: 121 RHQREWRAQVAEQASCQVVQVETDV--IVPVNIASQKAEWAARTIRPKINRELDNFLLLP 178
Query: 190 DYPMLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEI-----GWCESGEDAAMEVLKGS 244
+ L+ + + Q +D A L K +PE + + G AA + +
Sbjct: 179 EKCALKNKVRDFD--IQGLDLSD--PASLLKNLGMPETPPGVSAFFKGGASAAQKRM--- 231
Query: 245 KDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTF 304
D F+ K L NY N P +SG+ PYLHFGQ+SA AL + + PEA +
Sbjct: 232 -DKFIQKSLDNYSRHHNRP-DLADVSGMGPYLHFGQVSAAALALRVKNLKDADPEAQAAY 289
Query: 305 LEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADP 364
LE++IVRRELA NF + PNYD WA+K+LK+ A D R+ +YT +Q E T DP
Sbjct: 290 LEQIIVRRELAMNFVHFTPNYDQYACLPTWAQKTLKERAQDPRDPLYTPDQLEACDTHDP 349
>gi|401402998|ref|XP_003881384.1| hypothetical protein NCLIV_044160 [Neospora caninum Liverpool]
gi|325115796|emb|CBZ51351.1| hypothetical protein NCLIV_044160 [Neospora caninum Liverpool]
Length = 636
Score = 174 bits (440), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 122/370 (32%), Positives = 194/370 (52%), Gaps = 29/370 (7%)
Query: 15 RIRVLKQGSLDKKRGP--VVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQF- 71
R+R++ +G + K V+ ++ RD RV++NWAL+ A + A N P+ V L
Sbjct: 66 RVRLVTEGIREPKADGKVVICYLQRDLRVQENWALLLAQEAARALNKPLVVIHLLVPGLA 125
Query: 72 LGAKARQLGFMLRGLRLLQRNIEETFQILFFLF-------QG---EAEDNIPNFVRECGA 121
R L F + G R ++ ++ + I F L +G EA I
Sbjct: 126 FQPTRRHLSFFIGGAREVEAELK-SLNIGFELPIVAKKDPKGRLDEANKKIEEVFAALQP 184
Query: 122 SLLVTDFSPLREIRRCKDKICNRVSDSVT-IHEVDAHNVVPVWVASEKLEYSAKTLRGKI 180
+L V DF+PLR + + + ++ +++VD H VVP WVAS K E SA+T+R K+
Sbjct: 185 ALAVCDFNPLRLPTQIVEALARVYGKGLSPLYQVDTHAVVPCWVASNKAETSARTMRPKL 244
Query: 181 NKLLPEYLIDYPMLEQPIEKWTGTRQ-SIDWDSIIAAVLRKGAEVPEIGWCESGEDAAME 239
+L E+ + +P +E WT + +D D +++AV E P W + G AA+
Sbjct: 245 QAMLKEFAVPFPKVEPHPVPWTSKQLFPLDEDRVLSAVKPDPPE-PLDSW-KPGTKAALR 302
Query: 240 VLKGSKDGFLT-KRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKAR---- 294
+L+ F T + + Y RN+PL S LSPY+HFG I+ QRC +E K +
Sbjct: 303 LLQS----FATPQNIAKYGKARNDPLA-DCQSDLSPYIHFGHIAVQRCLMEVSKLKDTTG 357
Query: 295 -KLCPEAIDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTK 353
+ E + F++E++VR +L+DNF F+ P+YD +KGA +WA+++L+ HA DKRE Y
Sbjct: 358 DRAVHEGVRAFIDEVVVRSQLSDNFVFFNPHYDDIKGAPDWAKQTLEKHAKDKREPQYEF 417
Query: 354 EQFEKAQTAD 363
E+ +T D
Sbjct: 418 TALEEGKTYD 427
>gi|220931344|ref|YP_002508252.1| deoxyribodipyrimidine photo-lyase [Halothermothrix orenii H 168]
gi|219992654|gb|ACL69257.1| Deoxyribodipyrimidine photo-lyase [Halothermothrix orenii H 168]
Length = 466
Score = 173 bits (439), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 115/365 (31%), Positives = 196/365 (53%), Gaps = 23/365 (6%)
Query: 11 VQPGRIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQ 70
+ RI+ L + +++ + ++YWM QR N AL +A+ +ANK+N P+ V F +
Sbjct: 2 IHNSRIKPLNKKNINPRGEYILYWMQASQRTEYNHALEYAIIEANKSNKPLLVYFGIDTS 61
Query: 71 FLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSP 130
F A R FML GL+ +++++ I + + +I F ASLLV D
Sbjct: 62 FPEANRRHYQFMLEGLQEVKKSLYNR-GIKMIIESVPPDKDILKFAEY--ASLLVVDRGY 118
Query: 131 LREIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLID 190
L+ R ++ + ++ + +V+++ +VPV VAS K EY+A T+R K+ + LPE+L
Sbjct: 119 LKIERTWRNNVSQQID--CPLIQVESNVIVPVEVASSKEEYAAYTIRKKLYRKLPEFL-- 174
Query: 191 YPMLEQPIEKWTG-------TRQSIDWDSIIAAV--LRKGAEVPEIGWCESGEDAAMEVL 241
+P+ + I + + I D++ + L+ VPE+ G A+ +
Sbjct: 175 HPLHTRTIRVSSLDLKLSFINYKDIPLDNVTLCLDRLKVDNTVPEVNLYRGGTTRALALY 234
Query: 242 KGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARK--ARKLCPE 299
+ FL ++K+Y RN+P+K +S +SPYLHFGQ+S ++ + +
Sbjct: 235 ----NDFLHNKIKDYHEYRNDPVK-NWISNMSPYLHFGQVSPLHLIIKGNNYCKKHEIDK 289
Query: 300 AIDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKA 359
F EEL++RREL+ NF +Y P+YDS+K +WA+K+LK+H +D RE Y+ ++ E A
Sbjct: 290 GFKEFFEELVIRRELSFNFVYYNPDYDSIKSLPDWAKKTLKEHENDTREFSYSLQELEDA 349
Query: 360 QTADP 364
+T DP
Sbjct: 350 KTHDP 354
>gi|269839711|ref|YP_003324403.1| deoxyribodipyrimidine photo-lyase [Thermobaculum terrenum ATCC
BAA-798]
gi|269791441|gb|ACZ43581.1| Deoxyribodipyrimidine photo-lyase [Thermobaculum terrenum ATCC
BAA-798]
Length = 449
Score = 172 bits (436), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 120/354 (33%), Positives = 183/354 (51%), Gaps = 33/354 (9%)
Query: 31 VVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQ 90
+VY M RDQRV DN+AL+ A +A + +P+ V F L ++ G FML GL +
Sbjct: 1 MVYVMSRDQRVDDNFALLLAQREALERRLPLVVLFVLRERPGGRSREHFLFMLDGLEEVS 60
Query: 91 RNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICNRVSDSVT 150
R ++E I + L QG +RE A+ + DFSPLR R + + S
Sbjct: 61 RRLQE-LGIAWVLRQGSPSRTTLATLRELDAASVYLDFSPLRGARARAELLAREFEGST- 118
Query: 151 IHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQPIEKWTGTRQSIDW 210
H VDAHNV+P W S+K E +A T+R K++KLL YL P + + +++ +
Sbjct: 119 -HVVDAHNVIPAWEVSDKQEVAAHTMRSKVHKLLGRYLEAPPRIVRHPYSLADHLETLSF 177
Query: 211 DS---IIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPR 267
+ I+ + G + GE AA L+ F+ ++L+ Y RN+ +
Sbjct: 178 EQARDIVHGLPACGIRIAH----PPGEKAARRHLQK----FIDEKLEYYALLRND-VGRD 228
Query: 268 ALSGLSPYLHFGQISAQRCALEARKARKLCP------------------EAIDTFLEELI 309
S LSP+LH G IS+ R AL+ +A P + ++ LEE+I
Sbjct: 229 FQSDLSPWLHLGHISSLRVALQVIEAVGRPPLLLERAKLAEHSGQPSAYDGMNALLEEMI 288
Query: 310 VRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTAD 363
VR+EL+DNFC + P+Y SL+GA EW R++L+ H D RE Y+ +++E+A+T D
Sbjct: 289 VRKELSDNFCLHNPHYKSLQGAPEWGRQTLEAHREDPREFTYSLQEWEEARTHD 342
>gi|325971354|ref|YP_004247545.1| DNA photolyase FAD-binding protein [Sphaerochaeta globus str.
Buddy]
gi|324026592|gb|ADY13351.1| DNA photolyase FAD-binding protein [Sphaerochaeta globus str.
Buddy]
Length = 459
Score = 172 bits (435), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 127/360 (35%), Positives = 184/360 (51%), Gaps = 21/360 (5%)
Query: 11 VQPGRIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQ 70
++ RI +L ++K VVYWM QRVR N AL A++QAN P+ V F L
Sbjct: 2 IESQRITLLSSMPVNKAGSFVVYWMQAAQRVRQNEALAFAIEQANALGKPLVVFFGLERS 61
Query: 71 FLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECG-ASLLVTDFS 129
F GA+ R FML GL +++ ++L + IP + S+LVTD +
Sbjct: 62 FAGAQERHYRFMLEGLA----EVQQQLRLLGIPLWVHGDGIIPGLAKLVPFISVLVTDRA 117
Query: 130 PLREIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLI 189
R R+ + ++ + VS +EV+ + +VP+ S+K EYSA TLR KI ++ Y
Sbjct: 118 YTRVERQWRKQVASFVS--CPFYEVETNVIVPLEAVSDKEEYSAATLRRKIESMIA-YFA 174
Query: 190 DYPMLEQPIEKWTGTRQSIDWDSI--IAAVLRKGAEVPEIGWCE---SGEDAAMEVLKGS 244
+++P+ ++ A VL+ A G C GE A + L
Sbjct: 175 QIVAIQKPLVDGLSEEPLFACVNLGDTAMVLKALALGKMGGVCPHLVGGEIQAHQKL--- 231
Query: 245 KDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTF 304
F+ +L Y RN+P + + SGLSPYLHFGQISA R++ E + F
Sbjct: 232 -SQFIESKLSGYAIHRNDPSQQFS-SGLSPYLHFGQISAIDIY---HAVREIEVEDVPVF 286
Query: 305 LEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADP 364
LEELIVRRELA NF ++ P YD+ +G WA+KSL H D+R +Y+ + E+AQT DP
Sbjct: 287 LEELIVRRELAYNFVWFNPLYDAYEGLPSWAQKSLAFHEQDRRPILYSFAELEQAQTHDP 346
>gi|255076989|ref|XP_002502150.1| predicted protein [Micromonas sp. RCC299]
gi|226517415|gb|ACO63408.1| predicted protein [Micromonas sp. RCC299]
Length = 645
Score = 171 bits (434), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 135/397 (34%), Positives = 192/397 (48%), Gaps = 52/397 (13%)
Query: 8 STAVQPGRIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNL 67
++ V P R+R L +D + V+ W+ QR N AL +AV +AN+++VP+ F
Sbjct: 101 TSQVAPERLRRLNFKRVDPRGRYVLLWVQSAQRAMHNDALEYAVQRANEHDVPLVAVFGS 160
Query: 68 FDQFLGAKARQLGFMLRGLRLLQRNIEET--FQILFFLFQGEAEDNIPNFVRECGASLLV 125
F A R L FM +GL L+ +E T Q+L + G E GA ++
Sbjct: 161 TAGFPHANERHLAFMYQGLVELRETLERTRGVQLLAYTPVGGGEPGEVIVAASAGAREVI 220
Query: 126 TDFS---PLREIRRCKDKICNRVSDSVTIHEVDAHNVVPVW---VASEKLEYSAKTLRGK 179
D PL + RR K +R+ + EV+ VVP++ + + E +A TLR K
Sbjct: 221 VDAGYTRPLLDWRRTLAKRADRL-----VTEVECDVVVPLYGPGGGAGRSEPAAATLRPK 275
Query: 180 INKLLPEYLIDYPMLEQPIEKWTGTR-------------------------QSID--WDS 212
I LP L + P+ + R +S+D D+
Sbjct: 276 ILSRLPA-LTRNELEPTPLRRRLAARLDAEALLLGGEGEPGMAGFARVPLWESVDACLDA 334
Query: 213 IIAAVLRKGAE---VPEIGWCESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRAL 269
+ AAVL G + P G+ GE A+ L D FL +L NY + RN+P R
Sbjct: 335 LDAAVLGVGVDRSVKPASGYHVGGEREALRKL----DRFLESKLTNYASSRNDP-SLRLQ 389
Query: 270 SGLSPYLHFGQISAQRCALEARKARKLCPE---AIDTFLEELIVRRELADNFCFYQPNYD 326
S LSP++H+GQIS A ARK PE ++D FL+EL+VRRELA NFC P YD
Sbjct: 390 SHLSPHIHYGQISVVYVAHRARKVAAARPELRRSVDVFLDELVVRRELAINFCLNNPAYD 449
Query: 327 SLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTAD 363
+ +G EWAR++L HA+D R +YT EQFE+ T D
Sbjct: 450 AYEGVPEWARRTLATHATDHRSFVYTLEQFERCATHD 486
>gi|145544633|ref|XP_001458001.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124425820|emb|CAK90604.1| unnamed protein product [Paramecium tetraurelia]
Length = 453
Score = 171 bits (432), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 127/354 (35%), Positives = 193/354 (54%), Gaps = 21/354 (5%)
Query: 15 RIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGA 74
RI+ L ++ K V YW+ QR + N AL A+ +AN+ +P+ F L ++ A
Sbjct: 4 RIKYLNDKKVNVKGKYVAYWIQASQRTKYNHALELAIQKANQEQIPLFCFFGL-TKYPAA 62
Query: 75 KARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREI 134
R FML GL+ L+ ++ + +ILF + + +D + + A LL+ D LR
Sbjct: 63 NQRPYHFMLEGLQQLKTSLADR-KILFGVAKQSPDDLAISIAQ--NAKLLIVDCGYLRIQ 119
Query: 135 RRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYL--IDYP 192
++ + K+ + + E D +VPV AS+K E++AKT+R KI L + ++
Sbjct: 120 KQWRKKVADTIDCQFIQVETDV--LVPVEQASQKEEWAAKTIRPKIQSLTKYFAKELNEE 177
Query: 193 MLEQPIEKWTGTRQSIDWDSIIAAVLRKGAE--VPEIGWCESGEDAAMEVLKGSKDGFLT 250
L + ++K Q D +I + G + V + + GE A + L + FL
Sbjct: 178 TLVKQMDKLPF--QEYDISNITKVIDDLGVDKSVSIVQQFKGGEIEAQKRL----EEFLN 231
Query: 251 KRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCP-EAIDTFLEELI 309
K+LKNY +RN+P A S LSPYLHFG IS LEA K P E+ ++FLEELI
Sbjct: 232 KKLKNYAKNRNDP-SLNATSNLSPYLHFGMISPLHIYLEAMK---FPPSESRESFLEELI 287
Query: 310 VRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTAD 363
VRREL+ NFC+Y YD +G +WA+ +L++HA DKR++IYT +Q EKA+T D
Sbjct: 288 VRRELSMNFCYYNDLYDKYEGLPDWAKNTLQEHAKDKRDYIYTLDQLEKAKTHD 341
>gi|385799701|ref|YP_005836105.1| DNA photolyase FAD-binding protein [Halanaerobium praevalens DSM
2228]
gi|309389065|gb|ADO76945.1| DNA photolyase FAD-binding protein [Halanaerobium praevalens DSM
2228]
Length = 454
Score = 171 bits (432), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 126/363 (34%), Positives = 201/363 (55%), Gaps = 29/363 (7%)
Query: 11 VQPGRIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQ 70
V RI + + L KK V YWM R+ N AL +A+++AN+ N P+ + F + +
Sbjct: 3 VNKKRIEKINKSQL-KKGEFVAYWMQASPRLEYNQALGYAIEKANELNQPLLIFFLIDAK 61
Query: 71 FLGAKARQLGFMLRGLRLLQRNIE-ETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFS 129
F AK FML+GL+ L+ ++ E F F+L ++I ++ ASLL+++ +
Sbjct: 62 FPEAKTAHFKFMLQGLKELKTKLKNEDFN--FYLIDYNKLEDIKQITKK--ASLLISEKA 117
Query: 130 PLREIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLI 189
L+ +R+ K+++ +V + + V+++ + P+ S+K EY+A T+R KINK+ EYL
Sbjct: 118 YLKHLRKWKNQVAAKV--KIPFYLVESNLICPIEEVSDKEEYAAYTIRKKINKIKNEYLK 175
Query: 190 DYPMLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSK---- 245
+Y + + + I++++ ++ + E E +D + G K
Sbjct: 176 EYQL------QRLKNKNKIEFENKNLKFVKNLNQYLENKNFELQQDLSDHFRGGYKAAKL 229
Query: 246 --DGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAID- 302
+ FL +LK+Y RN P S LSPYLHFGQI+AQ AL A L E +
Sbjct: 230 KLNDFLKNKLKDYEEKRNIP-HLNFQSDLSPYLHFGQIAAQEIALAA-----LNSEYDEK 283
Query: 303 TFLEELIVRRELADNFCFYQPNYD-SLKGA-WEWARKSLKDHASDKREHIYTKEQFEKAQ 360
+FLEELIVRRELA NF +Y NYD SLK ++WA +SL +H +D+RE++YT ++ E A+
Sbjct: 284 SFLEELIVRRELAFNFVYYNQNYDGSLKDILYDWAYQSLMEHQADEREYLYTYQELENAK 343
Query: 361 TAD 363
T D
Sbjct: 344 THD 346
>gi|237756180|ref|ZP_04584748.1| deoxyribodipyrimidine photo-lyase [Sulfurihydrogenibium
yellowstonense SS-5]
gi|237691667|gb|EEP60707.1| deoxyribodipyrimidine photo-lyase [Sulfurihydrogenibium
yellowstonense SS-5]
Length = 455
Score = 171 bits (432), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 124/359 (34%), Positives = 187/359 (52%), Gaps = 25/359 (6%)
Query: 14 GRIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLG 73
GR++ L ++ ++YWM R N L +A+ +N P+ V F + D++
Sbjct: 7 GRVKALNDRQFNQSGKYIIYWMSHSHRANFNHGLEYAIKLSNDYKKPLLVYFLITDKYKY 66
Query: 74 AKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECG--ASLLVTDFSPL 131
+ AR FML G+ +++IEE I F + E D+I + E A L+TD + L
Sbjct: 67 SNARYYKFMLDGVLEAKKSIEER-GIKFII---EKSDDIKQRIIEISRSAVALITDKAYL 122
Query: 132 REIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDY 191
+ R+ I ++ + +EV++ +PV +AS+K E A LR KI LL YL+
Sbjct: 123 KYYRKLYSDIAKQLD--IPFYEVESDVCIPVEIASQKQEVYAFNLRKKIYALLDSYLLKL 180
Query: 192 PMLEQPIEKWT---GTRQ-SIDWDSIIAAVLRKGAEV---PEIGWCESGEDAAMEVLKGS 244
E I+ G ++ +++ I +L V P IG G + A LK
Sbjct: 181 APREPKIKSVNLDFGIKELTLNSSLEILDILNIDKSVSLSPFIG----GYNQAKRCLKE- 235
Query: 245 KDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTF 304
F+ K+L Y R++P + S LSPYLHFGQIS LE K E +D+F
Sbjct: 236 ---FIEKKLHKYKEYRSHP-ELDYQSNLSPYLHFGQISPIEVVLEILSEYK-KDENVDSF 290
Query: 305 LEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTAD 363
ELIV RELA NFC+Y PNY+ +G +WA+K+L+DH +DKR+++YT E+FE A+T D
Sbjct: 291 FNELIVWRELARNFCYYNPNYNHYEGIPDWAKKTLEDHKNDKRDYVYTLEEFENAKTHD 349
>gi|124506191|ref|XP_001351693.1| deoxyribodipyrimidine photolyase (photoreactivating enzyme, DNA
photolyase), putative [Plasmodium falciparum 3D7]
gi|23504621|emb|CAD51500.1| deoxyribodipyrimidine photolyase (photoreactivating enzyme, DNA
photolyase), putative [Plasmodium falciparum 3D7]
Length = 1113
Score = 170 bits (431), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 119/362 (32%), Positives = 186/362 (51%), Gaps = 54/362 (14%)
Query: 28 RGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFD-QFLGAK----ARQLGFM 82
+ V+ + RD R+ DNW+LI+A ++A +LF +L K R +
Sbjct: 629 KNNVLLLLTRDFRINDNWSLIYAYEKA------KKKKAHLFACTYLNRKEPFPKRHIDIK 682
Query: 83 LRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKIC 142
L+ L+ L+ N+++ I F+L D F+R ++ DF+PL E R I
Sbjct: 683 LKVLKNLEENMKKILNIPFYLLTIYMIDEFMEFLRIYDIKTIICDFNPLNETRIF---IQ 739
Query: 143 NRVSDS----VTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQPI 198
N V S + I +VD+HN+VP+W+ S+ E A+T++ KI + +LI+Y LE
Sbjct: 740 NLVELSNIKKIKILQVDSHNIVPIWITSKIEESCARTIKPKIQTHISTFLIEYVQLEM-- 797
Query: 199 EKWTGTRQSIDWDSII--------AAVLRKGA---EVPEIGWCESGEDAAMEVLKGSKDG 247
+D II + V +K P + E A E+L+
Sbjct: 798 -----------FDQIIKYPEPFSISEVFKKLTVYIPCPVLLNFVCTEQKAHEILQN---- 842
Query: 248 FLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDT---- 303
F +K+L+ Y +N+P ++ L+PY++FG IS+QRC LE K P +I+T
Sbjct: 843 FCSKKLERYSLKKNDP-NSEMINLLTPYINFGIISSQRCVLEVNKYANSYP-SINTISGK 900
Query: 304 --FLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQT 361
F EE+I+++ELADNFC+Y NYD+ G +WA+ SLK H SDKRE++Y + F+ A+T
Sbjct: 901 ELFSEEMIMKKELADNFCYYNKNYDNFNGGKDWAKDSLKKHDSDKREYLYDFDDFKNAKT 960
Query: 362 AD 363
D
Sbjct: 961 HD 962
>gi|402502123|ref|YP_006607781.1| DNA photolyase 2 [Apocheima cinerarium nucleopolyhedrovirus]
gi|284431213|gb|ADB84373.1| DNA photolyase 2 [Apocheima cinerarium nucleopolyhedrovirus]
Length = 395
Score = 169 bits (429), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 93/289 (32%), Positives = 163/289 (56%), Gaps = 13/289 (4%)
Query: 81 FMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDK 140
F + GL+L+ + ++ I F + G ++ + ++V++ + +V DF+PLR +RR +
Sbjct: 9 FWIEGLKLIHKECKQ-LNITFVVLNGSGDETLVDWVKKYNIAGIVCDFNPLRIVRRWTAR 67
Query: 141 ICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPM-LEQPIE 199
+ ++ V ++DAHN+VP WVAS+K E +A+T+R K+ + +L +P+ ++ I+
Sbjct: 68 VKTQLPSDVYFAQIDAHNIVPCWVASQKQEINARTMRNKLKTNMKSFLKPFPLVMKHSID 127
Query: 200 KWT----GTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLKN 255
T IDW ++ + + + W ++G + A L F+ L +
Sbjct: 128 SKARIDPATCDEIDWKKLLES-RDADKNIEPVTWAQAGYNNACVALAK----FIDDNLWH 182
Query: 256 YPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEA-IDTFLEELIVRREL 314
Y RN+P + S +SP+ HFGQIS QR A+ E+ ++T++EE VRREL
Sbjct: 183 YKETRNDP-NADSQSNMSPWYHFGQISVQRVVWYLIVAKMQHFESNVETYIEECFVRREL 241
Query: 315 ADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTAD 363
ADNFC+Y NYD +GA +WA+++L HA++ RE+ Y + + E ++T D
Sbjct: 242 ADNFCYYNINYDRFEGAPDWAKETLSLHANEGREYCYNRRELENSETHD 290
>gi|374316669|ref|YP_005063097.1| deoxyribodipyrimidine photolyase [Sphaerochaeta pleomorpha str.
Grapes]
gi|359352313|gb|AEV30087.1| deoxyribodipyrimidine photolyase [Sphaerochaeta pleomorpha str.
Grapes]
Length = 509
Score = 169 bits (429), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 121/353 (34%), Positives = 176/353 (49%), Gaps = 17/353 (4%)
Query: 15 RIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGA 74
R+++L + + VVYWM QR N AL +A+ AN + P+ V F + F A
Sbjct: 50 RLKILNDKAPNTNGDYVVYWMQASQRTIQNDALSYAIQTANAMHKPLLVYFGITANFPQA 109
Query: 75 KARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREI 134
R FML G+ +++++E L G E P + + LV D R
Sbjct: 110 NRRHYRFMLEGMEETEKDLKELGIPLLVHPYGIIEGLKPLYSH---MAYLVVDRGYTRHE 166
Query: 135 RRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPML 194
R + ++ ++ + V+++ +VPV AS K EYSA TLR KI ++ E + + P+L
Sbjct: 167 RAWRAQVAQETPCAMIM--VESNVIVPVECASTKEEYSAATLRRKITPMIGECIQELPVL 224
Query: 195 --EQPIEKWTGTRQSIDWDSIIAAVLRKG--AEVPEIGWCESGEDAAMEVLKGSKDGFLT 250
P S D I A + G E + W G+ A +LK F+
Sbjct: 225 ALSVPSLNLDTPYASADLSQIPALMEHLGIAEEASQCPWMHGGQANASAILKT----FIQ 280
Query: 251 KRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIV 310
+ L+ Y + N+P P +S LSPYLHFG IS E K P+ + FLEEL++
Sbjct: 281 ENLEGYGSKSNDPAIPH-VSHLSPYLHFGMISPVTIYQEVMKTG--LPD-VAPFLEELVI 336
Query: 311 RRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTAD 363
RRELA NF +Y P YD+ +G WAR S++ H +DKR IYTKEQ E+A+T D
Sbjct: 337 RRELAMNFVYYNPLYDAYEGLPAWARASMQKHQADKRTSIYTKEQLERAETHD 389
>gi|225873485|ref|YP_002754944.1| deoxyribodipyrimidine photolyase [Acidobacterium capsulatum ATCC
51196]
gi|225793521|gb|ACO33611.1| deoxyribodipyrimidine photolyase [Acidobacterium capsulatum ATCC
51196]
Length = 470
Score = 169 bits (427), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 118/358 (32%), Positives = 184/358 (51%), Gaps = 17/358 (4%)
Query: 12 QPGRIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQF 71
Q R+ V + G+ + VVYWM R QR DN AL A+ N+ +PV F+ F
Sbjct: 10 QDARVTVRRNGAPLPQGKCVVYWMQRAQRALDNPALDMAIRIGNELGLPVVAYFSAISNF 69
Query: 72 LGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPL 131
A R F+ +GL ++ ++ E + + F+ + +++ + E A++L+ D +P
Sbjct: 70 PHANLRHYVFLNQGLADIEEDMAE--RNVTFIVRRPPGNSLEQLLEEVQAAMLIGDENPC 127
Query: 132 REIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDY 191
RE R + I R++ + +DA VVP + K +Y R + LLP+YL+
Sbjct: 128 REPERWRQVIAKRLN--MPYWTIDADVVVPSNLFP-KHQYMVHIFRKRFEPLLPQYLVPQ 184
Query: 192 PMLEQPIEKWTGTRQSIDWD---SIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGF 248
P++ Q + W + +D + + V + G A +LK F
Sbjct: 185 PVI-QAEKSWPHPKGFEAFDVRHDVTEGWSKFDRSVKPVDSFHGGTHEAQRLLKD----F 239
Query: 249 LTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCAL---EARKARKLCPEAIDTFL 305
+T +L NYP +RN+P + S LSPYLHFG IS AL +A K + EA D++L
Sbjct: 240 VTNKLANYPKERNHP-ELDGTSRLSPYLHFGHISPLTIALAVEDAHKNKHASREACDSYL 298
Query: 306 EELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTAD 363
ELI R++A NF + P YDS + A EWA+K+L++HA D R+ IYT E+ E+A+T D
Sbjct: 299 NELIAWRDMAVNFVKFVPGYDSFEAAPEWAQKTLREHARDTRDPIYTLEELERAETCD 356
>gi|115379247|ref|ZP_01466362.1| deoxyribodipyrimidine photo-lyase [Stigmatella aurantiaca DW4/3-1]
gi|310819481|ref|YP_003951839.1| deoxyribodipyrimidine photo-lyase [Stigmatella aurantiaca DW4/3-1]
gi|115363746|gb|EAU62866.1| deoxyribodipyrimidine photo-lyase [Stigmatella aurantiaca DW4/3-1]
gi|309392553|gb|ADO70012.1| Deoxyribodipyrimidine photo-lyase [Stigmatella aurantiaca DW4/3-1]
Length = 469
Score = 168 bits (425), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 135/357 (37%), Positives = 193/357 (54%), Gaps = 15/357 (4%)
Query: 11 VQPGRIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQ 70
V+ R++ LK + K V+YWM + R N AL +A+ QAN +P+ V + L D
Sbjct: 6 VEESRLKRLKDHAA-KGGDYVLYWMQQSARAEHNPALEYAIQQANAAKLPLLVGYGLMDG 64
Query: 71 FLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSP 130
+ A R F+L GL+ QR + +I F L +G ++ R+ A+L+V D
Sbjct: 65 YPEANVRHYRFLLEGLQDCQRTLAHR-KIPFALQRGPPDEVALKLSRQ--AALVVCDRGY 121
Query: 131 LREIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLID 190
LR ++ + + + S + +V+A VVPV AS K EY+A+TLR KI++L EYL+
Sbjct: 122 LRHQKQWRQTLAAKAS--CPVVQVEADVVVPVEAASGKAEYAARTLRPKIHRLWEEYLVR 179
Query: 191 YPMLEQPIEKWTGTRQSIDWDSIIAAVLRKGAE--VPEIG-WCESGEDAAMEVLKGSKDG 247
++ + ++ D + A + R + VP + + G A VL+G
Sbjct: 180 PTSTPLEVDSLKLGVKGLNLDDVGAVLDRMALDRSVPPVHHFFRGGTSEAKRVLRG---- 235
Query: 248 FLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEE 307
F+T+ L Y +R +P + +S +S YLHFGQIS AL AR+AR L P+ DTFLEE
Sbjct: 236 FVTRHLPEYQENRPHP-ETDHVSHMSKYLHFGQISPVVVALAAREARALRPQR-DTFLEE 293
Query: 308 LIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADP 364
LIVRRELA NF Y P YD WARK+L HA DKR YTK Q E+A+T DP
Sbjct: 294 LIVRRELAQNFAEYTPQYDDYTSLPAWARKTLAAHAGDKRPFHYTKAQLEQARTHDP 350
>gi|187234360|gb|ACD01432.1| DNA photolyase [Thysanoplusia orichalcea NPV]
Length = 241
Score = 167 bits (424), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 94/219 (42%), Positives = 126/219 (57%), Gaps = 14/219 (6%)
Query: 153 EVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPML-EQPIE-----KWTGTRQ 206
+VDAHN+VP WVAS K EYSA+TLR K+N+LLP +L +P + + P +
Sbjct: 1 QVDAHNIVPCWVASNKQEYSARTLRSKLNRLLPTHLTPFPFVSKHPYDSKIDPNALSMYA 60
Query: 207 SIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKP 266
+IDW ++ + V + W +G A++ L F+ +L Y RNNP
Sbjct: 61 NIDWRHLLES-RDADVSVRPVDWASAGYINAVDTLAD----FIDTKLYKYKNLRNNP-NE 114
Query: 267 RALSGLSPYLHFGQISAQRCALE--ARKARKLCPEAIDTFLEELIVRRELADNFCFYQPN 324
S LSP+ HFGQIS QR L + K I+T++EE +VRRELADN+CFY PN
Sbjct: 115 NVQSNLSPWFHFGQISVQRVVLYLLSLDDNKAIKSHIETYVEECVVRRELADNYCFYNPN 174
Query: 325 YDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTAD 363
YD+L GA EWA +LK HA DKR + YT +Q E + T D
Sbjct: 175 YDNLAGAPEWAIATLKKHAGDKRSYCYTSDQLEYSATHD 213
>gi|195976053|gb|ACG63558.1| DNA photolyase II [Pseudoplusia includens nucleopolyhedrovirus]
Length = 241
Score = 166 bits (421), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 94/219 (42%), Positives = 126/219 (57%), Gaps = 14/219 (6%)
Query: 153 EVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPML-EQPIE-----KWTGTRQ 206
+VDAHNVVP WVAS K EYSA+TLR K+N+LLP +L +P + + P +
Sbjct: 1 QVDAHNVVPCWVASNKQEYSARTLRSKLNRLLPTHLTPFPFVSKHPYDSKIDPNALSMYA 60
Query: 207 SIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKP 266
+IDW ++ + V + W +G A++ L F+ +L Y RNNP
Sbjct: 61 NIDWRHLLES-RDADVSVRPVDWASAGYINAVDTLAD----FIDTKLYKYKNLRNNP-NE 114
Query: 267 RALSGLSPYLHFGQISAQRCALE--ARKARKLCPEAIDTFLEELIVRRELADNFCFYQPN 324
S LSP+ HFGQIS QR L + K I+T++EE +VRRELADN+CFY PN
Sbjct: 115 NVQSNLSPWFHFGQISVQRVVLYLLSLDDNKAIKSHIETYVEECVVRRELADNYCFYNPN 174
Query: 325 YDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTAD 363
YD+L GA EWA +LK HA DKR + YT +Q E + T +
Sbjct: 175 YDNLAGAPEWAIATLKKHAGDKRSYCYTSDQLEYSATHN 213
>gi|395645794|ref|ZP_10433654.1| DNA photolyase FAD-binding [Methanofollis liminatans DSM 4140]
gi|395442534|gb|EJG07291.1| DNA photolyase FAD-binding [Methanofollis liminatans DSM 4140]
Length = 444
Score = 166 bits (420), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 133/353 (37%), Positives = 175/353 (49%), Gaps = 17/353 (4%)
Query: 11 VQPGRIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQ 70
VQP RI L G V+YWM QR +N AL ++V++AN N PV V F L
Sbjct: 2 VQPERISPL-NGREAVAGEYVLYWMQSSQRAGENPALEYSVERANSINKPVYVCFGLDVS 60
Query: 71 FLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSP 130
+ A R FML GLR +++ I FF+ +G + F A L+VTD
Sbjct: 61 YPEANRRSFAFMLEGLRETGEDLK-VRGIPFFVREGPPYEVAAAFGE--AACLVVTDRGY 117
Query: 131 LREIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLID 190
LR + ++++ V V V++ VVPV VAS K E+SA T R KI + L YLI
Sbjct: 118 LRHLNAWRERVAAAVPCPVIT--VESGVVVPVEVASGKEEWSAATFRPKILRQLETYLI- 174
Query: 191 YPMLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLT 250
P+ E+ + + D L VP G G A L F +
Sbjct: 175 -PVKERQVNVPLQPDEVADAGVPAVDRLLVDGSVP-AGMFAGGTAEARRHL----GIFCS 228
Query: 251 KRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIV 310
+RL Y RN+P + LS LSPYLHFGQIS AL R A +LEE IV
Sbjct: 229 ERLSAYEDGRNDPNR-DVLSDLSPYLHFGQISPVEIALAVRATGM---PAARAYLEEAIV 284
Query: 311 RRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTAD 363
RRELA NF Y P YD+ G +WA+++L DHA D+RE+IYT + E+ +T D
Sbjct: 285 RRELAVNFVRYNPGYDAYDGLPQWAKQTLADHARDQREYIYTLRELEEGRTHD 337
>gi|359457902|ref|ZP_09246465.1| deoxyribodipyrimidine photolyase [Acaryochloris sp. CCMEE 5410]
Length = 470
Score = 166 bits (419), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 124/369 (33%), Positives = 191/369 (51%), Gaps = 32/369 (8%)
Query: 8 STAVQPGRIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNL 67
++ ++ RI++L + ++ + G V+YWM + QR N AL +A+ +AN PV V F L
Sbjct: 3 NSLIEDERIQILNKQNV-QPGGYVLYWMQQSQRAEYNHALEYAIQRANDLQQPVVVCFGL 61
Query: 68 FDQFLGAKARQLGFMLRGLR-----LLQRNIEETFQILFFLFQGEAEDNIPNFVRECG-- 120
+ G+ R FML GL+ L+QR I+ F + G N E G
Sbjct: 62 MADYPGSNLRHYTFMLEGLQDTEQALIQRGIK------FVMRYG----NPDQIALELGKD 111
Query: 121 ASLLVTDFSPLREIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKI 180
ASL+V D LR R+ +D + V +V++ VVP+ S K +Y+A+T+R +I
Sbjct: 112 ASLVVCDRGYLRFQRQWRDNVAQNALCQVA--QVESEVVVPIETTSVKADYAARTIRPRI 169
Query: 181 NKLLPEYLIDYPMLEQPIEKWTGTRQSIDWD-SIIAAVLRK---GAEVPEIG-WCESGED 235
++ L +L+ P P+++ + D S I AVL K VP + + G
Sbjct: 170 HRHLDRFLV--PFASTPVQQSSLHLDLKTLDLSNIEAVLAKLPLDCSVPPVSSLFQGGTT 227
Query: 236 AAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARK 295
A E+L + FL K Y RN P + +S +S YLHFGQIS AL+ +
Sbjct: 228 RAKEIL----EQFLQKSFAIYADHRNQP-QTDDVSYMSQYLHFGQISPLYLALQIQSMGN 282
Query: 296 LCPEAIDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQ 355
+ + +DT++EELIVRRELA NF +Y P+YD+ WA+ +L +H D R Y+ EQ
Sbjct: 283 VPRDNVDTYIEELIVRRELAMNFAYYTPDYDAYSCLPNWAKTTLDNHRHDPRIPCYSLEQ 342
Query: 356 FEKAQTADP 364
++++T DP
Sbjct: 343 LDESRTEDP 351
>gi|188996663|ref|YP_001930914.1| Deoxyribodipyrimidine photo-lyase [Sulfurihydrogenibium sp.
YO3AOP1]
gi|188931730|gb|ACD66360.1| Deoxyribodipyrimidine photo-lyase [Sulfurihydrogenibium sp.
YO3AOP1]
Length = 455
Score = 165 bits (418), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 123/359 (34%), Positives = 184/359 (51%), Gaps = 25/359 (6%)
Query: 14 GRIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLG 73
GR++ L ++ +YWM R N L +A+ +N P+ V F + D++
Sbjct: 7 GRVKALNDRQFNQSGKYTIYWMSHSHRANFNHGLEYAIKLSNDYKKPLLVYFPITDKYKY 66
Query: 74 AKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECG--ASLLVTDFSPL 131
+ AR FML G+ +++IEE I F + E D I V E A L+TD + L
Sbjct: 67 SNARYYKFMLDGVLEAKKSIEER-GIKFII---EKSDGIEQRVIEISKNAVALITDKAYL 122
Query: 132 REIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDY 191
+ R+ I ++ + +EV++ VPV +AS+K E A +R KI LL Y++
Sbjct: 123 KYYRKLYSDITKQLD--IPFYEVESDVCVPVEIASQKQEVYAFNIRKKIYDLLDSYILKL 180
Query: 192 PMLEQPIEKWT---GTRQ-SIDWDSIIAAVLRKGAEV---PEIGWCESGEDAAMEVLKGS 244
E I+ G ++ +++ I +L V P IG G A LK
Sbjct: 181 EPREPKIKSVNLDFGIKELTLNSSLEILDILNIDKSVSLSPFIG----GYSQAKRCLKE- 235
Query: 245 KDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTF 304
F+ K+L Y R++P + S LSPYLHFGQIS ALE K E +D+F
Sbjct: 236 ---FIEKKLHKYKEYRSHP-ELDYQSNLSPYLHFGQISPIEVALEILSEYK-KDENVDSF 290
Query: 305 LEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTAD 363
ELI RELA NFC+Y P+Y+ +G +WA+K+L+DH +DKR+++YT E+FE A+T D
Sbjct: 291 FNELIAWRELARNFCYYNPSYNHYEGIPDWAKKTLEDHKNDKRDYVYTLEEFENAKTHD 349
>gi|9964339|ref|NP_064807.1| putative CPD photolyase [Amsacta moorei entomopoxvirus 'L']
gi|9944548|gb|AAG02731.1|AF250284_25 AMV025 [Amsacta moorei entomopoxvirus 'L']
Length = 453
Score = 164 bits (416), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 114/369 (30%), Positives = 187/369 (50%), Gaps = 31/369 (8%)
Query: 14 GRIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLG 73
R+++ K+ +D V+Y +RD RV DNW+ +++ + A NN + V + L ++
Sbjct: 9 NRVKIHKK--IDTINKNVLYLAYRDLRVYDNWSFLYSQNIAYLNNSSMYVLY-LINKNNN 65
Query: 74 AKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLRE 133
RQ F+ GL + ++ + F L + +++ L
Sbjct: 66 INIRQYKFLYEGLPEFESQCKKC-NVSFHLLSYNNNIISNFINKYKIGHVIIEQMPLLFH 124
Query: 134 IRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPM 193
+ D + +V ++ VD+HN++PVWV S+K EY+A+T+R KINKL +YLI++P
Sbjct: 125 KKYYLDPLKKL---NVNVYIVDSHNIIPVWVTSDKQEYNARTIRIKINKLKDQYLIEFPK 181
Query: 194 LE----QPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEI-GWCESGEDAAMEVLKGSKDGF 248
++ QPI + D II +K + EI G +G + + F
Sbjct: 182 VKISNIQPI----FVENNFD---IIPNYDKKLINIYEIVGGYTNGINRM--------NNF 226
Query: 249 LTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCP---EAIDTFL 305
++ Y +NNP S LSP+LH G ISAQRC LEA K +K+ E+ID+F+
Sbjct: 227 FKNKINTYKDKKNNP-NYENTSILSPWLHCGMISAQRCVLEANKLKKIKDYNIESIDSFI 285
Query: 306 EELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPV 365
EE+ +R+EL+DNFC+Y NY S WA +L+ H +DKR I++ + E +T + +
Sbjct: 286 EEIFIRKELSDNFCYYNNNYKSFASCPNWAILTLEIHKTDKRNKIFSLRELEYGKTDNKL 345
Query: 366 SIYLWMFIL 374
Y ++L
Sbjct: 346 WNYCQYYLL 354
>gi|383789019|ref|YP_005473588.1| deoxyribodipyrimidine photo-lyase [Caldisericum exile AZM16c01]
gi|381364656|dbj|BAL81485.1| deoxyribodipyrimidine photo-lyase [Caldisericum exile AZM16c01]
Length = 448
Score = 164 bits (416), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 117/354 (33%), Positives = 179/354 (50%), Gaps = 13/354 (3%)
Query: 14 GRIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLG 73
GR ++LK ++ V+YWM QRV N AL A+++AN+ P+ V F + + F
Sbjct: 2 GRTKILKDLHINSYGKFVLYWMQSSQRVVYNLALYEAINKANEIKKPLVVLFVINENFPY 61
Query: 74 AKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLRE 133
R FML GL+ + + + I F + G+ ++ +F + AS+L+ D +
Sbjct: 62 GSRRNFLFMLEGLKEVYEELHK-LGIKFVVHVGDPVKHVVDFSK--NASILIMDVGYTKL 118
Query: 134 IRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPM 193
+R + I V+ + + V+ + +VPV +AS K EY+A T+R KI K L +YL M
Sbjct: 119 LREWRKNIVESVN--IPVLSVEDNVIVPVEIASNKEEYAAYTIRRKIQKQLNDYLKPLNM 176
Query: 194 LEQPIEKWTGTRQSIDWDSIIAAV--LRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTK 251
+ S D + A+ L + E + + G A E+L + F+
Sbjct: 177 PQIAFPPLREILFSFDVRNPKDAINRLHFRYNISETCYFKGGYSNAKEIL----NEFIQN 232
Query: 252 RLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVR 311
+L NY ++ N S LSPYLHFGQIS AL ++ E + FLEELI+R
Sbjct: 233 KLPNY-FEKKNDFSESFTSNLSPYLHFGQISPIEIALSVLESSVEQHEK-EAFLEELIIR 290
Query: 312 RELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPV 365
RELA NF +Y P YD L+G W ++L+ H D R + Y+ Q E A+T DP+
Sbjct: 291 RELAFNFVYYNPRYDRLEGLEHWEYETLQRHKFDIRTYRYSFSQLENAETHDPL 344
>gi|444917023|ref|ZP_21237131.1| Deoxyribodipyrimidine photolyase, type II [Cystobacter fuscus DSM
2262]
gi|444711669|gb|ELW52608.1| Deoxyribodipyrimidine photolyase, type II [Cystobacter fuscus DSM
2262]
Length = 469
Score = 164 bits (415), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 124/364 (34%), Positives = 197/364 (54%), Gaps = 23/364 (6%)
Query: 8 STAVQPGRIRVLKQGSLDKKRGP-VVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFN 66
+T ++ GRI+ L + + G V+YWM + R N AL A+ +AN+ +P+ V F
Sbjct: 3 NTRIEAGRIQRLN--TRESSEGDYVLYWMQQSARAEHNPALEFAIQRANEAKLPLLVGFG 60
Query: 67 LFDQFLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVT 126
L D + A AR F+L GLR R + +I F + +G E R A+L+V
Sbjct: 61 LMDDYPEANARHYRFLLEGLRDTARALARR-RIPFVVQRGSPEVVALKLARR--AALVVA 117
Query: 127 DFSPLREIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPE 186
D LR ++ + + ++ + + +V+ VVPV +AS K E++A+TLR K+++
Sbjct: 118 DRGYLRHQKQWRRTLADKAA--CPVFQVEGDVVVPVDIASNKAEWAARTLRPKLHRAWDA 175
Query: 187 YLIDYPMLEQPIEKWTGTR---QSIDWDSIIAAV--LRKGAEVPEIGWC-ESGEDAAMEV 240
YL+ P+ P+ + TR + +D + + A + L+ VP + C G A+ +
Sbjct: 176 YLV--PLAPTPL-RTDSTRLEVKGLDLEDVDALLGKLKVDRGVPPVHHCFRGGTSEALRL 232
Query: 241 LKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEA 300
L+ F+T L Y R +P + +S +S YLHFGQ+S AL AR A+ P+
Sbjct: 233 LRA----FVTDHLPEYKESRPHP-ESGHVSHMSKYLHFGQVSPVVVALAARAAKAADPQR 287
Query: 301 IDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQ 360
++FLEELIVRREL NFC + P+YD+ +WAR++L H D+R+H Y+ Q E+A+
Sbjct: 288 -ESFLEELIVRRELTQNFCEFTPHYDTYDCLPKWARETLHQHRGDERQHQYSLAQLERAR 346
Query: 361 TADP 364
T DP
Sbjct: 347 THDP 350
>gi|197105770|ref|YP_002131147.1| deoxyribodipyrimidine photolyase - classI [Phenylobacterium
zucineum HLK1]
gi|196479190|gb|ACG78718.1| deoxyribodipyrimidine photolyase - classI [Phenylobacterium
zucineum HLK1]
Length = 455
Score = 164 bits (415), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 127/338 (37%), Positives = 183/338 (54%), Gaps = 20/338 (5%)
Query: 31 VVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQ 90
V+YWM + QR N AL +AV+QAN +P+ V F L F A AR FMLRGL ++
Sbjct: 22 VLYWMQQSQRAGGNPALEYAVEQANALKLPLLVCFGL-AAFPEANARHYDFMLRGLAEVE 80
Query: 91 RNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICNRVSDSVT 150
R + I F + + + + + + + LR R ++++ ++ +
Sbjct: 81 RALAAR-GIGFVIRKRPPHELVRELAADAALVVADRGY--LRIQRAWRERLAEGLARRLV 137
Query: 151 IHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQPIEKWT-GTRQSID 209
+V+ VVPV AS K EY+A+T+R K+++L +YL +P+ E+P+ G R + D
Sbjct: 138 --QVEGDVVVPVEAASNKHEYAARTIRPKLHRLWDDYL--HPLAERPVNHPALGLRVAGD 193
Query: 210 WD----SIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLK 265
D + A L+ VP + +GE AA L D + L Y DR+ P +
Sbjct: 194 VDLSKVDAVLAGLKIDRSVPPVRRFAAGEGAARAALAAFLD----RGLARYEADRSRP-E 248
Query: 266 PRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVRRELADNFCFYQPNY 325
A+S LSPYLHFGQIS AL R+A + + T+LEELIVRRELA N F P Y
Sbjct: 249 AGAVSHLSPYLHFGQISPVEIALAVREAGVVS--GVATYLEELIVRRELAMNHAFQAPAY 306
Query: 326 DSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTAD 363
D + EWAR++L DHASD R H+YT++QFE A+T D
Sbjct: 307 DRYEVLPEWARQTLADHASDPRPHLYTRDQFEAAETHD 344
>gi|452944037|ref|YP_007500202.1| DNA photolyase FAD-binding protein [Hydrogenobaculum sp. HO]
gi|452882455|gb|AGG15159.1| DNA photolyase FAD-binding protein [Hydrogenobaculum sp. HO]
Length = 455
Score = 164 bits (414), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 119/359 (33%), Positives = 185/359 (51%), Gaps = 25/359 (6%)
Query: 14 GRIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLG 73
GR++ L ++ ++YWM R N +L +A++ +N P+ V F + D+
Sbjct: 7 GRVKALNDRQFNQSGKYIIYWMSHSHRANFNHSLEYAINLSNDYKKPLLVYFPITDKCRY 66
Query: 74 AKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVREC--GASLLVTDFSPL 131
+ AR FML G+ +++IEE I F + E D+I V E A+ L+TD + L
Sbjct: 67 SNARYYKFMLDGVLEAKKSIEER-GIRFII---EKSDDIKRRVIEISKNANALITDKAYL 122
Query: 132 REIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDY 191
+ R+ I ++ + +EV++ VPV + S+K E A +R KI +L YL+
Sbjct: 123 KYYRKLNSDIAKKLD--IPFYEVESDVCVPVEIVSQKQEVYAFNIRKKIYDVLGSYLLKL 180
Query: 192 PMLEQPIEKWT---GTRQSIDWDSI----IAAVLRKGAEVPEIGWCESGEDAAMEVLKGS 244
E I+ G + +S+ I + + + P IG G A L
Sbjct: 181 KPREPKIKSINLDFGMEEITLNNSLKILDILNIDKSISLSPFIG----GYSQAKRYL--- 233
Query: 245 KDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTF 304
+ F+ K+L Y R++P + S LSPYLHFGQIS E K E +D+F
Sbjct: 234 -EEFIEKKLHKYKDYRSHP-ELDYQSNLSPYLHFGQISPLEVVFETLSKYKR-DENVDSF 290
Query: 305 LEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTAD 363
ELIV RELA NFC+Y PNY+ +G +WA+K+L++H +DKR+++YT E+FE A+T D
Sbjct: 291 FNELIVWRELARNFCYYNPNYNHYEGIPDWAKKTLEEHKNDKRDYVYTLEEFENAKTHD 349
>gi|85858841|ref|YP_461043.1| deoxyribodipyrimidine photolyase [Syntrophus aciditrophicus SB]
gi|85721932|gb|ABC76875.1| deoxyribodipyrimidine photolyase [Syntrophus aciditrophicus SB]
Length = 460
Score = 163 bits (413), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 124/354 (35%), Positives = 182/354 (51%), Gaps = 12/354 (3%)
Query: 11 VQPGRIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQ 70
+Q R++ L + L KK V+YWM QR N AL +A+ +AN PV V F + D
Sbjct: 2 IQKERVKSLNKAEL-KKGKYVLYWMQASQRETCNHALEYAIRKANALCQPVVVFFGIVDD 60
Query: 71 FLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSP 130
F A R FML GL +R +E+ I + E + R+ ASL+V D
Sbjct: 61 FPEANERHYFFMLEGLCDAKRTLEKR-GIQLVIQHCSPELGVVMMSRD--ASLVVVDRGY 117
Query: 131 LREIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLID 190
LR I++ + D I +V++ VVP+ S K EYSA T+R KI++ L +YLI
Sbjct: 118 LR-IQKAWRNVAAASMDCPLI-QVESDVVVPIEETSSKEEYSAATIRKKIHQKLNQYLIS 175
Query: 191 YPMLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLT 250
+ + + +S D + A+LR ++ C S E + D F+
Sbjct: 176 LEETKPMADSLSLDFESFPIDDVERAILR--LDIDRSVKCVSFFRGGFEEGRKHLDVFID 233
Query: 251 KRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIV 310
++L++Y RN+P LS +SPYLHFGQIS AL + + EA +LEELIV
Sbjct: 234 QKLEHYAEHRNDPTLD-CLSLMSPYLHFGQISPLYIALRILNSGRTSSEA---YLEELIV 289
Query: 311 RRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADP 364
RREL NF FY +YD+ + WA+KSL+ H D+R + Y++++ E +T DP
Sbjct: 290 RRELGINFVFYNTHYDTFECLPGWAKKSLRTHEKDQRPYHYSRKELEDGKTHDP 343
>gi|389843393|ref|YP_006345473.1| deoxyribodipyrimidine photolyase [Mesotoga prima MesG1.Ag.4.2]
gi|387858139|gb|AFK06230.1| deoxyribodipyrimidine photolyase [Mesotoga prima MesG1.Ag.4.2]
Length = 449
Score = 163 bits (413), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 115/349 (32%), Positives = 175/349 (50%), Gaps = 28/349 (8%)
Query: 23 SLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFM 82
S D++ V+YWM QR +N AL A +A + +VP+AV F L + R FM
Sbjct: 12 SNDRRGNFVLYWMQASQRTEENHALELAKQEAKELDVPLAVLFVLNANYPSGNLRSFSFM 71
Query: 83 LRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKIC 142
GLR ++ +EE I F +F+G+ D +P + C +L+VTD LR + +I
Sbjct: 72 FDGLRDVKSELEEQ-GIRFVIFKGDPVDIVPKVSKRC--ALVVTDVGYLRHQIDWRKRIA 128
Query: 143 NRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLE------- 195
++ V+++ VVPV AS K EYSA T R K+ K E++ D+ +E
Sbjct: 129 EKLE--CPFLSVESNVVVPVRTASCKEEYSAATFRKKVMKHFAEFVNDFEAVELRSRASL 186
Query: 196 QPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLKN 255
E TG + +D + +V + V + + +EV FL+K L
Sbjct: 187 AEFEGATGI-EDVDLSDLDQSV----SVVSDFHGGQKEAKRRLEV-------FLSKNLDR 234
Query: 256 YPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVRRELA 315
+ +RN+P LS +SP+LHFG IS A R+ C + + ++EEL+VRREL
Sbjct: 235 FEEERNDP-NSGCLSEMSPFLHFGHISPSYIA---RRVIDSCSKGKNAYIEELVVRRELG 290
Query: 316 DNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADP 364
NF FY YDS + +WA+K+L +H DKR ++ + E +T DP
Sbjct: 291 VNFVFYNSKYDSFEALPQWAQKTLNEHRKDKRVRSFSLSELESGKTDDP 339
>gi|108803508|ref|YP_643445.1| deoxyribodipyrimidine photo-lyase type II [Rubrobacter xylanophilus
DSM 9941]
gi|108764751|gb|ABG03633.1| Deoxyribodipyrimidine photo-lyase type II [Rubrobacter xylanophilus
DSM 9941]
Length = 464
Score = 161 bits (408), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 120/360 (33%), Positives = 175/360 (48%), Gaps = 14/360 (3%)
Query: 8 STAVQPGRIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNL 67
+ +Q R+R L + V+YWM QR N AL +AV QAN + F L
Sbjct: 3 TAGIQQERVRHLNHRGPRESGEYVLYWMQASQRAEHNHALEYAVRQANALGRSLVCVFGL 62
Query: 68 FDQFLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTD 127
D + A R FML GL +++ + I F + +G ++ R A+L+VTD
Sbjct: 63 TDGYPEANLRHYAFMLEGLADVEKGLRRR-GIGFAVRRGSPDEVALEAGRR--AALIVTD 119
Query: 128 FSPLREIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEY 187
LR R ++ + VT +V++ +VPV AS++ EY+A+T R ++++ L +
Sbjct: 120 RGYLRHQVRWRENVAAEAGCRVT--QVESDVLVPVETASDRREYAARTFRPRVSRHLERF 177
Query: 188 LIDY--PMLEQP-IEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGS 244
L+ L +P G D ++ + P G AA +L+
Sbjct: 178 LVGLGTTALRRPSAGAGLGGLDLSDPGRVLEELDLDRGVGPVGHLYRGGTRAAKRLLRR- 236
Query: 245 KDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTF 304
FL + L Y + R+ P +S +S YLHFG IS AL AR + E + F
Sbjct: 237 ---FLEEGLPGYASGRDQP-HAGGVSHMSKYLHFGHISPLYVALRARGS-GAPEEDVGAF 291
Query: 305 LEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADP 364
LEEL+VRRELA NF Y PNYDS EWAR +L++H D RE +YT+ Q E+A T DP
Sbjct: 292 LEELVVRRELAVNFVRYTPNYDSYSCLPEWARSTLEEHRGDSRERVYTRRQLEEAATHDP 351
>gi|389584197|dbj|GAB66930.1| deoxyribodipyrimidine photolyase [Plasmodium cynomolgi strain B]
Length = 566
Score = 161 bits (408), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 110/330 (33%), Positives = 172/330 (52%), Gaps = 19/330 (5%)
Query: 40 RVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQRNIEETFQI 99
RV DNWAL +A + A K + +A ++ R + L+ L+ L++ +++ I
Sbjct: 95 RVNDNWALTYAYEIAKKKGFSL-IACTCLNRKEKVTNRFIYTKLKILKNLEQALKQ-INI 152
Query: 100 LFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICNRVSDS-VTIHEVDAHN 158
F+L D + F++ L+ D L + + +C+ + V + +VDAHN
Sbjct: 153 PFYLLPLYMIDELGEFIKTHQVKLISCDLHVLHDEKAFIKSLCHLCNKKKVKMIQVDAHN 212
Query: 159 VVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQPIEKWTGTRQSIDWDSIIA--A 216
VVP+WV S+ E S +T++ KI LLP +LI+Y ++ P E+ D + +++
Sbjct: 213 VVPMWVTSKVEECSVRTIKPKIQALLPTFLIEYVSID-PFEQNLKFPNPFDIEDVVSKLT 271
Query: 217 VLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYL 276
V A +P+ E A E+L F K L Y RN+P A S L PY+
Sbjct: 272 VSNTCAVIPDFVLTEK---KAQELL----SDFCRKVLDKYNVKRNDP-NSDAGSVLLPYV 323
Query: 277 HFGQISAQRCALEARKARKLCPE-----AIDTFLEELIVRRELADNFCFYQPNYDSLKGA 331
+ G ISAQRC LE K P ++F ++ I+R+ELADN+C+Y NYD+ +G
Sbjct: 324 NLGVISAQRCVLEVHKHAYSNPSINAVSGKESFSDDFIMRKELADNYCYYNKNYDNFEGG 383
Query: 332 WEWARKSLKDHASDKREHIYTKEQFEKAQT 361
+WA++SLK H SDKRE++Y E F A+T
Sbjct: 384 RDWAKESLKKHDSDKREYLYDYEDFRSAKT 413
>gi|390959171|ref|YP_006422928.1| deoxyribodipyrimidine photolyase [Terriglobus roseus DSM 18391]
gi|390414089|gb|AFL89593.1| deoxyribodipyrimidine photolyase [Terriglobus roseus DSM 18391]
Length = 561
Score = 161 bits (407), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 120/354 (33%), Positives = 182/354 (51%), Gaps = 15/354 (4%)
Query: 15 RIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGA 74
R+ V + G+ VVYWM R +R DN AL AV+ AN+ +PV F+ F
Sbjct: 108 RVTVRRDGAPKPDGKVVVYWMQRAERGVDNPALDVAVEVANELGLPVVAFFSGVSNFPHG 167
Query: 75 KARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREI 134
R F+ GLR ++ ++ E + F L ED + F ++ A++++ D +P+R
Sbjct: 168 VLRGYIFLNEGLRDVETDLRER-NVPFILRNAPHEDRL-QFFQDVDAAIVIGDENPMRVP 225
Query: 135 RRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDY--P 192
+ ++ +++ + VDA +VP EK Y+A T+RG++ K+LPEYL + P
Sbjct: 226 EGWRKQVQSKLK--MPFWTVDADVIVPT-KRYEKAPYAAYTIRGRLWKMLPEYLEESTNP 282
Query: 193 MLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKR 252
+ K G R + + V + + G AA+ LK F+T
Sbjct: 283 RAKHTWHKPHGFRSDDPQEDMTKGWKDLDRTVGKAEDLDGGSHAALRRLKH----FVTHL 338
Query: 253 LKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCP---EAIDTFLEELI 309
L +Y RN+P + S LSPYLHFG IS R LE KA P E+ D+FL+E++
Sbjct: 339 LPSYAQQRNHP-EVDGTSLLSPYLHFGHISPLRIYLEIEKAAAANPKLRESADSFLDEMV 397
Query: 310 VRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTAD 363
REL + + PNYD+ + A WARK+++ HA DKREH+YT +Q E A+T D
Sbjct: 398 TWRELCIAWVKWDPNYDNPETAEAWARKTVEAHAHDKREHLYTLKQLEPAETYD 451
>gi|452819843|gb|EME26894.1| deoxyribodipyrimidine photo-lyase isoform 1 [Galdieria sulphuraria]
Length = 487
Score = 161 bits (407), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 115/370 (31%), Positives = 183/370 (49%), Gaps = 35/370 (9%)
Query: 11 VQPGRIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQ 70
V R+RVL + + R V+YWM R+ N+AL +AV AN+ P+ + F L +
Sbjct: 5 VSNQRVRVLNNKPVQESREFVLYWMQAAVRLTYNYALQYAVFSANQLGKPLLICFGLTES 64
Query: 71 FLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSP 130
F A AR F+L GL+ +QR + E ++ +F E E + + A +V D +
Sbjct: 65 FPEANARHYAFLLEGLQDVQRQLAER-KLSMVVFHSEPEQMVEKLFHK--AVQVVVDMNY 121
Query: 131 LREIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKI----NKLLPE 186
LR + + ++ + + S +V+ VVPV + ++K EY+A+T+R K+ NK L
Sbjct: 122 LRVTKNWRQRVASNIDCSFI--QVETECVVPVELVTDKEEYAARTIRPKLWKHANKFLIP 179
Query: 187 Y---------LIDYPMLEQ-PIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDA 236
+ L+D P +++ + G + + L VP + GE
Sbjct: 180 WADTIHVENQLVDIPQIDELTVLDLQGEAKEL------VERLNVDKTVPPVSHFVGGETE 233
Query: 237 AMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQR--CALEARKAR 294
A L F +L++Y RN+P +S +SPYLHFG IS C ++ +A
Sbjct: 234 AKRRLAE----FCRSKLRDYEKKRNDP-SLNCVSHMSPYLHFGHISPVEIVCQVQQAQAS 288
Query: 295 KLCPEAIDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKE 354
K C D F+EE+ +RREL+ NFC+Y YD+ WA++++ +H+ D R+ YT E
Sbjct: 289 KTCK---DAFIEEVFIRRELSFNFCYYCDKYDAFDCLPTWAKQTMSEHSKDPRQFSYTLE 345
Query: 355 QFEKAQTADP 364
Q E A T DP
Sbjct: 346 QLETAVTHDP 355
>gi|221057079|ref|XP_002259677.1| deoxyribodipyrimidine photolyase (photoreactivating enzyme, DNA
photolyase) [Plasmodium knowlesi strain H]
gi|193809749|emb|CAQ40451.1| deoxyribodipyrimidine photolyase (photoreactivating enzyme, DNA
photolyase), putative [Plasmodium knowlesi strain H]
Length = 923
Score = 161 bits (407), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 111/337 (32%), Positives = 178/337 (52%), Gaps = 23/337 (6%)
Query: 37 RDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQRNIEET 96
RD RV DNWALI+A + A K + + +A ++ R + L+ L+ L+ ++++
Sbjct: 449 RDFRVNDNWALIYAYEMAKKKGLTL-IACTCLNRKEKVTNRFIHTKLKILKNLEYSLKK- 506
Query: 97 FQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIR---RCKDKICNRVSDSVTIHE 153
I F++ D F++ ++ D L + + + +CN+ V + +
Sbjct: 507 INIPFYMLPLYMIDEFGEFMKTHQVKIITCDLHVLNDEKAFIKSLSHLCNKRK--VKMFQ 564
Query: 154 VDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQPIEKWTGTRQSIDWDSI 213
VD+HN+VP+WV S+ E S +T++ KI LLP +LI+Y +E P + + D D +
Sbjct: 565 VDSHNIVPMWVTSKMEECSVRTIKPKIQALLPTFLIEYMSIE-PFVQNLKFPEPFDIDEV 623
Query: 214 IA--AVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSG 271
+ +V A VP E A E+LK F +K L Y RN+P A S
Sbjct: 624 LNKLSVSNTCAVVPNFVLTEK---KAEELLKD----FCSKVLDKYNVKRNDP-NSDAGSV 675
Query: 272 LSPYLHFGQISAQRCALEARKARKLCPE-----AIDTFLEELIVRRELADNFCFYQPNYD 326
L PY++ G IS+QRC LE K P ++F ++ I+R+ELADN+C+Y NYD
Sbjct: 676 LLPYVNLGIISSQRCVLEVHKHAYNNPSINAVSGKESFSDDFIMRKELADNYCYYNKNYD 735
Query: 327 SLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTAD 363
+ +G +WA++SLK H +DKRE++Y E F A+T +
Sbjct: 736 NFEGGRDWAKESLKKHDADKREYLYDYEDFRSAKTHN 772
>gi|322433858|ref|YP_004216070.1| DNA photolyase FAD-binding protein [Granulicella tundricola
MP5ACTX9]
gi|321161585|gb|ADW67290.1| DNA photolyase FAD-binding protein [Granulicella tundricola
MP5ACTX9]
Length = 470
Score = 161 bits (407), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 115/358 (32%), Positives = 180/358 (50%), Gaps = 15/358 (4%)
Query: 11 VQPGRIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQ 70
Q R+ + + GS D K VVYWM R QR DN A+ AV+ AN +P+ V F
Sbjct: 10 TQNPRVTIRRDGSPDPKGRCVVYWMQRAQRGIDNHAVNLAVEVANHLGLPLVVYFAAISN 69
Query: 71 FLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSP 130
F A R F+ +GL ++ ++ + + FL + ++ + + A++++ D +P
Sbjct: 70 FPHANLRHYAFLNQGLPDIEEDLAA--RNITFLMRRAPHESHEQLLADVKAAIVIGDENP 127
Query: 131 LREIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLID 190
+RE R + + ++ + VD V+P + EK +Y A T+R ++ +LLPEYL+
Sbjct: 128 MREPERWRKTLAEKIR--IPFWTVDTDVVIPSSLI-EKAQYGAYTIRPRLYRLLPEYLVP 184
Query: 191 Y--PMLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGF 248
Y P + P + + + I V + + + G A + LK F
Sbjct: 185 YENPHAQHPWHRPKSFKSDSVHEDITMGWKDLDRSVGPVEYWKGGTHAGLAQLKR----F 240
Query: 249 LTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPE---AIDTFL 305
TK L +Y RN P + S +SPYLH+G + Q AL A K P+ A D++
Sbjct: 241 TTKLLGDYEVQRNKP-EADGTSSMSPYLHYGHLGPQTIALAVDAAAKANPKLQSARDSYF 299
Query: 306 EELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTAD 363
ELI RELA NF + YD+ + A WA+K++ +HA D+REHIYT +Q E A+T D
Sbjct: 300 NELIAWRELAVNFVRFSSVYDTAECAENWAQKTIAEHARDEREHIYTTKQLEFAETYD 357
>gi|68304204|ref|YP_249672.1| DNA photolyase 1 [Chrysodeixis chalcites nucleopolyhedrovirus]
gi|67973033|gb|AAY83999.1| DNA photolyase 1 [Chrysodeixis chalcites nucleopolyhedrovirus]
Length = 512
Score = 160 bits (406), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 110/357 (30%), Positives = 171/357 (47%), Gaps = 29/357 (8%)
Query: 27 KRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGL 86
K+G VVYWM+RD RV+DNWA+I+A A K P+ + + L +L + RQ F++ GL
Sbjct: 55 KKGGVVYWMWRDCRVQDNWAMIYAQYLAFKTKSPLYIVYCLPKFYLNSTRRQYQFLIEGL 114
Query: 87 RLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICNRVS 146
L E I F + A+ + ++VR+ +V DF+PL+ + I +
Sbjct: 115 IELSEECAE-LDITFVILDDSADVVLIDWVRKHDICAVVCDFNPLQLQIKSTVNILQNLP 173
Query: 147 DSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQP-----IEKW 201
V +VDAHNVVP W+ + + KI+ L L + ++ Q +
Sbjct: 174 ADVYFAQVDAHNVVPCWLTFIADRHDYDEFKSKIDAELENLLTPFSLVIQHPYKSVVSIE 233
Query: 202 TGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLKNYPTDRN 261
+ T SIDW +++++ V I W E+G +AA+ L F+ + NY +
Sbjct: 234 SSTNTSIDWSNLLSS-RNVDHSVKRIKWTEAGYNAAILRLA----TFIQCYIYNYKNSIH 288
Query: 262 NPLKPRALSGLSPYLHFGQISAQRCALEARKA-------------RKLCPEAIDTFLEEL 308
NP+ + S LSP+ HFG ISAQR R RKL I+ F+E
Sbjct: 289 NPVSSKQ-SDLSPFFHFGFISAQRVIYHLRFCVTKKSVLQKTVFIRKL-KNNIEKFIENC 346
Query: 309 IVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPV 365
+ RRE ADNFC++ NY + A ++ + H R + Y+ + E +QT D +
Sbjct: 347 LYRREFADNFCYFNLNYITFNAASPQIKRYIAKHL---RYYTYSLNELEYSQTHDNI 400
>gi|74229751|ref|YP_308955.1| photolyase [Trichoplusia ni SNPV]
gi|72259665|gb|AAZ67436.1| photolyase [Trichoplusia ni SNPV]
Length = 502
Score = 160 bits (404), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 112/372 (30%), Positives = 179/372 (48%), Gaps = 33/372 (8%)
Query: 17 RVLKQGSLDK------KRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQ 70
R+LK +++ +G VVYWM+RD RV+DNWALI+A A K P+ + + L
Sbjct: 29 RILKLSQVNEPDQSVANKGGVVYWMWRDCRVQDNWALIYAQYLAFKTKSPLYIVYCLPKT 88
Query: 71 FLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSP 130
+L A RQ F++ GL L E I F + A+ + ++V + ++TD++P
Sbjct: 89 YLNATRRQYQFLIEGLIGLSEECVE-LDITFVILDDRADVVLIDWVLKHDICAVITDYNP 147
Query: 131 LREIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLID 190
L+ + + + +VDAHNVVP W S+ ++ + KIN+ L YL
Sbjct: 148 LQLQMNVVVTVLQNLPAEIYFAQVDAHNVVPGWTLSDTGKFDYDQFKVKINEQLENYLTR 207
Query: 191 YPML-----EQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSK 245
+ ++ + + + T +IDW+ ++++ V I W E+G DAA+ L
Sbjct: 208 FSLVIRHPYKSVVAIESSTNTAIDWNQLLSS-RSIDHSVKRINWTEAGYDAAILRLA--- 263
Query: 246 DGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRC------------ALEARKA 293
F+ L NY + L S LSP+LHFG ISAQR L+ +
Sbjct: 264 -SFIQCSLYNYKNCIQD-LTSTNQSDLSPFLHFGFISAQRVIYHLRFCITKQSVLQKTIS 321
Query: 294 RKLCPEAIDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTK 353
+ + I+ F+E + RRE ADNFC+Y NY+S ++ +K H R Y
Sbjct: 322 KVKLEKNINRFIENCLYRREFADNFCYYNSNYNSFIAPSTQSKLYIKRHI---RFFTYGL 378
Query: 354 EQFEKAQTADPV 365
++ E +QT D +
Sbjct: 379 KELENSQTHDAL 390
>gi|304315052|ref|YP_003850199.1| deoxyribodipyrimidine photo-lyase [Methanothermobacter marburgensis
str. Marburg]
gi|313104153|sp|P58818.2|PHR_METTM RecName: Full=Deoxyribodipyrimidine photo-lyase; AltName: Full=DNA
photolyase; AltName: Full=Photoreactivating enzyme
gi|302588511|gb|ADL58886.1| deoxyribodipyrimidine photo-lyase [Methanothermobacter marburgensis
str. Marburg]
Length = 444
Score = 159 bits (402), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 121/377 (32%), Positives = 182/377 (48%), Gaps = 64/377 (16%)
Query: 11 VQPGRIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQ 70
+ RIR L + V+YWM R N AL +A++ AN + P+ V F L D+
Sbjct: 2 IHDERIRSLNTEKPARDGKYVIYWMQASVRAHWNHALEYAIETANSLHKPLIVIFGLTDE 61
Query: 71 FLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSP 130
F A +R F++ GLR ++ + + + GA L+V + P
Sbjct: 62 FPNANSRHYRFLIEGLR-----------------------DVGDALMKRGARLVVENERP 98
Query: 131 LREIRRCKDKICNRVSD------------------SVTIHEVDAHNVVPVWVASEKLEYS 172
+ R D+ V D V + +V+++ +VPV AS K EYS
Sbjct: 99 PSAVMRYSDEASAVVVDRGYLDIQKEWVDELAESLHVPLMQVESNVIVPVETASPKEEYS 158
Query: 173 AKTLRGKINKLLPEYLIDYPMLEQPIEKWTGTRQSIDWD-----SIIAAVLRKGAEVPEI 227
A T R KI + L +++ P+++ S+D D + + R E+ E
Sbjct: 159 AGTFRPKITRELERFMV-------PLKERRLAVDSLDLDPGPDLNDVTGKFRASEEL-EP 210
Query: 228 GWCESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCA 287
G A+ + D FL+++L + RN+P+K LS +SPYLHFG IS A
Sbjct: 211 SIFSGGASEAIRLF----DEFLSEKLACFEKYRNDPVK-NCLSNMSPYLHFGHISPLYLA 265
Query: 288 LEARKARKLCPEAIDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKR 347
++A K + CPE FLEELIVRREL+ NF Y NY S++ EWA+K+L +HA D +
Sbjct: 266 MKASKTGE-CPE----FLEELIVRRELSMNFVHYSDNYSSIRCLPEWAQKTLMEHARDPK 320
Query: 348 EHIYTKEQFEKAQTADP 364
E+ YT +FE+A+T DP
Sbjct: 321 EYEYTLREFEEARTHDP 337
>gi|188586748|ref|YP_001918293.1| deoxyribodipyrimidine photo-lyase [Natranaerobius thermophilus
JW/NM-WN-LF]
gi|179351435|gb|ACB85705.1| Deoxyribodipyrimidine photo-lyase [Natranaerobius thermophilus
JW/NM-WN-LF]
Length = 456
Score = 159 bits (401), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 131/371 (35%), Positives = 192/371 (51%), Gaps = 38/371 (10%)
Query: 11 VQPGRIRVLKQGSLDKKRGP-VVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFD 69
+ RI +L++ + G V+YWM + QR N AL +A++QANK N+P+ V F L++
Sbjct: 2 IHKERIEILQEVQTPAQEGKYVLYWMQKAQRTHYNHALEYAIEQANKLNLPLIVYFGLYE 61
Query: 70 QFLGAKARQLGFMLRGLR-----LLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLL 124
QF A +R FML+GL+ L +RNI+ + F + G E AS++
Sbjct: 62 QFPYASSRHFQFMLQGLQDVAENLAKRNIKMIIKRTFPPY-GAIE-------LAKDASMI 113
Query: 125 VTDFSPLREIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLL 184
V D L+ + K+ + +++ S IH+++ V+PV AS K EY+A TLR K+ K+L
Sbjct: 114 VVDKGYLKFEKDWKEILSHQL--SCPIHQIETDAVIPVNTASSKEEYAAYTLRKKLLKML 171
Query: 185 PEYLIDYPMLEQPIE----KWTGTRQSIDWD------SIIAAVLRKGAEVPEIGWCESGE 234
+L P++ + + T Q D D S I L EV + + GE
Sbjct: 172 DIFLT--PLISRNPNFNSFEITNLEQYNDIDIYTKSASEILEELDIHREVQPVTDIKGGE 229
Query: 235 DAAMEVLKGSKDGFLT--KRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARK 292
+ A+E L GFL K L+ Y +N+P +A S LSPYLHFGQIS ALE
Sbjct: 230 NQALEQL----SGFLNQGKGLELYIQKKNDP-SVQATSKLSPYLHFGQISPLFIALE--- 281
Query: 293 ARKLCPEAIDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYT 352
K + FLE+LIVRREL+ N NY +L +W+ K+L +H +D R + YT
Sbjct: 282 VLKFTQDYNHEFLEQLIVRRELSLNLIEKNINYLTLSPLPQWSIKTLNEHRNDPRNNFYT 341
Query: 353 KEQFEKAQTAD 363
E+ E A T D
Sbjct: 342 LEEIEAANTHD 352
>gi|167629931|ref|YP_001680430.1| deoxyribodipyrimidine photolyase [Heliobacterium modesticaldum
Ice1]
gi|167592671|gb|ABZ84419.1| deoxyribodipyrimidine photolyase [Heliobacterium modesticaldum
Ice1]
Length = 498
Score = 158 bits (399), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 133/398 (33%), Positives = 182/398 (45%), Gaps = 64/398 (16%)
Query: 11 VQPGRIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQ 70
+Q RI+VL GS R V+YWM QR N AL +A+ +ANK +PV V F L
Sbjct: 2 IQRERIQVLNAGSAQAGR-YVLYWMQASQRAEYNHALEYAIGEANKLGLPVLVFFGLTGG 60
Query: 71 FLGAKARQLGFMLRGLRLLQRNIEETFQ---ILFFLFQGEAEDNIPNFVRECGASLLVTD 127
GA AR F+L GL ++ E Q I + + + + R A+L+VTD
Sbjct: 61 VPGANARHYRFLLEGL----CDVREALQRRGIAMIIRRIPPVEGVVALARR--AALVVTD 114
Query: 128 FSPLREIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEY 187
LR R+ ++ R+ +V++ +VPV AS K EY A T R KI +LL +
Sbjct: 115 RGYLRYQRQWREAAAARI--DCPFIQVESDVIVPVETASPKEEYGAATFRPKIKRLLDTF 172
Query: 188 LI------------------DYPMLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGW 229
L+ D + +P+ + T S SI+ A+ + P GW
Sbjct: 173 LVPLEERDTDCPAPDVEALLDEALPGEPVFADSATPLS----SIVTALSVDASISPARGW 228
Query: 230 CESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALE 289
++A + D FL K+L Y D+ +P LS LSP+LHFGQIS AL+
Sbjct: 229 RGGSKEAHRRL-----DDFLGKKLFRYHEDKKDP-SLDGLSELSPFLHFGQISPLEVALK 282
Query: 290 ARKARK---------------------LCPE---AIDTFLEELIVRRELADNFCFYQPNY 325
AR+A + P + FLEELIVRRELA NF +Y P Y
Sbjct: 283 ARQAVATDLSLDGTGLSLDGTGPSPVGVGPSPNPGLAAFLEELIVRRELAMNFAYYNPAY 342
Query: 326 DSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTAD 363
D WA+ +L H D RE YTK + E A T D
Sbjct: 343 DQFAALPAWAQATLHSHRLDSREFNYTKAELENACTHD 380
>gi|449016433|dbj|BAM79835.1| probable class II DNA photolyase [Cyanidioschyzon merolae strain
10D]
Length = 591
Score = 157 bits (398), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 118/377 (31%), Positives = 189/377 (50%), Gaps = 28/377 (7%)
Query: 8 STAVQPGRIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNL 67
++ V+P R+RV + R V+YW+ R+ +N AL +A+++AN N P+ F +
Sbjct: 88 ASTVEPERVRVANTKPVYPDRRYVLYWVQASPRILENHALEYAIERANALNKPLVACFGV 147
Query: 68 FDQFLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTD 127
D++ A R F+L GL L ++ + + F + G ++ R A +VTD
Sbjct: 148 TDKYPEANLRHYRFLLEGLSELWEDLRKKRGVAFHVLYGPPDEVAAQCARG-AACEVVTD 206
Query: 128 FSPLREIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEY 187
+R R+ ++++ + +T+ E +A VVPV +ASEK E++A+TLR +I + +
Sbjct: 207 LGYMRIQRQWRERLAQALDCRLTLVESEA--VVPVELASEKHEFAARTLRPRIWAYIQRF 264
Query: 188 LI-------DYPMLEQPIEKWTGTR--------QSIDWDSIIAAVLRKGA---EVPEIG- 228
+ + LE P++ + S + I AA+ R + VP +
Sbjct: 265 CVPQAPQTLHHSQLEIPVDHGPYSELFEECPIDDSEAPERIDAALERLESLDRSVPAVSR 324
Query: 229 WCESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCAL 288
+ G A+ L + F + +L Y RN P + S LS YLHFGQIS AL
Sbjct: 325 YFRGGTSEALRRL----EIFCSTKLSFYGEGRNQP-QSDHTSCLSAYLHFGQISPITIAL 379
Query: 289 EARKARKLCPEAIDTFLEELIVRRELADNFCFYQP-NYDSLKGAWEWARKSLKDHASDKR 347
++ E+ D F+EELIVRREL+ N C+Y+P +YD L EW ++ +H D R
Sbjct: 380 AVWSRKETPRESRDAFIEELIVRRELSFNHCWYRPDDYDKLDSLPEWVHRTYAEHRDDPR 439
Query: 348 EHIYTKEQFEKAQTADP 364
EH+Y E+AQT DP
Sbjct: 440 EHLYDLASLEQAQTHDP 456
>gi|224371018|ref|YP_002605182.1| DNA deoxyribo-dipyrimidine photolyase family protein
[Desulfobacterium autotrophicum HRM2]
gi|223693735|gb|ACN17018.1| DNA deoxyribo-dipyrimidine photolyase family protein
[Desulfobacterium autotrophicum HRM2]
Length = 453
Score = 157 bits (397), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 118/345 (34%), Positives = 171/345 (49%), Gaps = 31/345 (8%)
Query: 31 VVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQ 90
V+YWM + QR +N AL +A+ QAN+ + V V F+L + A R FML GL +
Sbjct: 21 VLYWMQQAQRAEENHALEYAIYQANQQDKMVVVVFSLTNDSPDANLRHYTFMLEGLNETR 80
Query: 91 RNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICNRVSDSVT 150
+++E+ + F G + + R+ AS++V D LR R + I + V
Sbjct: 81 KSLEKRGIRMIFRI-GHPVKEVLDIGRK--ASMIVCDRGYLRHQRAWRKAIAEKSGCPVV 137
Query: 151 IHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYL--IDYPMLEQP----------I 198
E D V+PV S+K EY+A T+R KI++ L +YL I++ L P +
Sbjct: 138 QVETDV--VIPVEQVSDKAEYAAYTIRPKISRQLDQYLTPIEHIELRNPSLEIALKSTEL 195
Query: 199 EKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLKNYPT 258
E+ + ++ D I V + + G E+ K D FL + Y
Sbjct: 196 ERIKTVLKDLNVDDSIQPV----SHIFRGGTSEA---------KARFDVFLDQHFSRYAV 242
Query: 259 DRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVRRELADNF 318
RN P K A+S +SPYLHFGQIS AL+ + + EA +LEELIVRRELA NF
Sbjct: 243 HRNEP-KYLAVSCMSPYLHFGQISPLYLALKIKACKNEAQEAAAAYLEELIVRRELAANF 301
Query: 319 CFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTAD 363
++ P YDSL W K+L +H D R+ +YTK Q +T D
Sbjct: 302 VYFNPYYDSLGCLPAWPTKTLAEHEKDVRDPVYTKSQLIACRTHD 346
>gi|355570882|ref|ZP_09042152.1| DNA photolyase FAD-binding [Methanolinea tarda NOBI-1]
gi|354826164|gb|EHF10380.1| DNA photolyase FAD-binding [Methanolinea tarda NOBI-1]
Length = 455
Score = 156 bits (395), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 119/355 (33%), Positives = 169/355 (47%), Gaps = 30/355 (8%)
Query: 16 IRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAK 75
IR L G K V+YWM R N AL +A+ A ++PV F + + A
Sbjct: 10 IRALPAG----KGKYVLYWMQSSVRSGGNMALAYALAIARTRDLPVVTCFCIDPSYPEAN 65
Query: 76 ARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIR 135
R F+ G+ + + +I L +G+ I + R+ A+L+VTD L R
Sbjct: 66 LRHFTFLAEGILSAGKRLSRR-KIPLVLRRGDPVKEISDLARD--AALVVTDRGYLSYHR 122
Query: 136 RCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLE 195
RC++ + T+ E +A +VPV AS+K E+SA T R KI +P + D P
Sbjct: 123 RCREALARETGSPFTVVEDNA--IVPVESASQKEEWSAGTFRRKIGGHVP-FFFDLPA-- 177
Query: 196 QPIEKWTGTRQSIDWDSI----IAAVLRKG--AEVPEIGWCESGEDAAMEVLKGSKDGFL 249
R+ D D I + ++ G + V GED A L + F+
Sbjct: 178 ----DAVSVRKPPDIDGIPYRDVKTLIHSGIDSTVGPSPLFRGGEDEARRRL----EIFI 229
Query: 250 TKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELI 309
+L YP+ RN+P + LS LSPYLHFG IS CA + + + FL++LI
Sbjct: 230 KDKLPIYPSRRNDPSRD-VLSHLSPYLHFGNISPLECASRVLETQG---QGTGEFLDQLI 285
Query: 310 VRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADP 364
VRRELA NF Y P YDS +G W ++L HA D RE+ YT + E+A T DP
Sbjct: 286 VRRELAINFVHYNPRYDSFQGLPSWVLETLAHHARDLREYTYTARELERAATHDP 340
>gi|88604444|ref|YP_504622.1| deoxyribodipyrimidine photolyase [Methanospirillum hungatei JF-1]
gi|88189906|gb|ABD42903.1| Deoxyribodipyrimidine photo-lyase type II [Methanospirillum
hungatei JF-1]
Length = 448
Score = 156 bits (395), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 121/356 (33%), Positives = 177/356 (49%), Gaps = 20/356 (5%)
Query: 11 VQPGRIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQ 70
+QP RI + + K ++YWM R R N AL +A++++N+ P+ V F L
Sbjct: 2 IQPERITSFN--NQEPKGSYILYWMQSAVRTRYNHALEYAIERSNELKKPLIVVFCLDHS 59
Query: 71 FLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSP 130
+ A F+ GL+ + R++ E I F + G D IP + A ++VTD
Sbjct: 60 YPEATPVHYRFLWEGLQDVNRSLTER-GIGFQILSGSPVDIIPRIADD--ACMMVTDQGW 116
Query: 131 LREIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLID 190
R R + K+ + V I V+ + +VPV VAS K E+SA T R KI + LP +L
Sbjct: 117 TRLQREWRQKVIDTAPCKVVI--VETNLIVPVHVASPKEEWSAGTFRPKITRQLPAFL-- 172
Query: 191 YPMLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPE---IGWCESGEDAAMEVLKGSKDG 247
+P++ + ++ + + + A G +PE + GE+AA L
Sbjct: 173 HPLICRHVQGESTDCEPFTGLPVGAEQQFTGKPLPEDTSTQFLPGGENAADHYLSA---- 228
Query: 248 FLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEE 307
FL++ + Y N+P A S LS YLHFG IS AL R P + FLE+
Sbjct: 229 FLSETIDRYEATHNDPTA-HATSYLSAYLHFGHISPLDIAL--RVMEHPGP-GTNAFLEQ 284
Query: 308 LIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTAD 363
LIVRREL+ NF +Y P YD +G EW RKSL+ H D RE+ YT FE+ +T D
Sbjct: 285 LIVRRELSHNFVWYNPLYDHYEGLPEWTRKSLEKHRIDTREYSYTPADFEECRTHD 340
>gi|339239563|ref|XP_003381336.1| deoxyribodipyrimidine photolyase [Trichinella spiralis]
gi|316975640|gb|EFV59048.1| deoxyribodipyrimidine photolyase [Trichinella spiralis]
Length = 515
Score = 155 bits (393), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 124/361 (34%), Positives = 182/361 (50%), Gaps = 25/361 (6%)
Query: 16 IRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNL-----FDQ 70
I +L + +++ V+YW+ RV+ N AL A +AN++ VPV F D
Sbjct: 23 IHLLNAKACNERGKYVLYWVQTSPRVKFNVALELACQKANEHQVPVLACFVFPTDKRLDN 82
Query: 71 FLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSP 130
F R+ FML GLR ++ +++ I + G+ E I C +V D
Sbjct: 83 FPPETERRCVFMLDGLRDFEKRLKKERNIDLVVLYGKCEILIAKLAENCCE--VVVDAGY 140
Query: 131 LREIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLID 190
+R + D++ N + T +V+ + VVPV + SEK E++A T+R KI K +YL++
Sbjct: 141 MRYQNK-YDEVNNNIECRFT--KVETNVVVPVELVSEKEEFAAYTIRPKIWKYAKQYLVE 197
Query: 191 YPMLEQPIEK----WTGTRQSIDW---DSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKG 243
P I K ++ ID D++I A L V ++ G A+++L
Sbjct: 198 -PECIMVIAKNKPLFSDNLPLIDLSQSDNVILAKLNADTTVKKVANIHGGHSEAVKLL-- 254
Query: 244 SKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDT 303
D F++K+L NY RN P SGLSPY++FG IS L+ A K D
Sbjct: 255 --DNFVSKKLPNYDKLRNIP-GLDGQSGLSPYINFGHISTVEIILKVN-ASKANKSVKDA 310
Query: 304 FLEELIVRRELADNFCFYQP-NYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTA 362
F+E+L+VRREL+ NF Y NYDSLK +WA +LK A KRE+IYT EQ EK +T
Sbjct: 311 FVEQLLVRRELSINFVHYNSENYDSLKCLPKWAADTLKLQAKAKREYIYTSEQLEKGETH 370
Query: 363 D 363
D
Sbjct: 371 D 371
>gi|320109156|ref|YP_004184746.1| DNA photolyase FAD-binding protein [Terriglobus saanensis SP1PR4]
gi|319927677|gb|ADV84752.1| DNA photolyase FAD-binding protein [Terriglobus saanensis SP1PR4]
Length = 479
Score = 155 bits (393), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 119/367 (32%), Positives = 184/367 (50%), Gaps = 33/367 (8%)
Query: 12 QPGRIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQF 71
Q R+ + + G + VVYWM R QR RDN AL AV A++ +PV F F
Sbjct: 15 QDPRVTLRRAGVPNPDGRCVVYWMQRAQRGRDNAALNLAVQIADELGLPVVTYFAGISNF 74
Query: 72 LGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPL 131
A R F+ +GL ++ ++ E + + F+ + E + F + A++++ D +PL
Sbjct: 75 PHANLRHYHFLQQGLLDVENDLAE--RGIGFVLRNAPECSPVQFFADAHAAIVIGDENPL 132
Query: 132 REIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDY 191
R + R + + + V +D +VP + EK +Y+A+T+R ++ K LPE+L
Sbjct: 133 RAMERWRSMVAKNIE--VPYWTIDTDVIVPSKLL-EKAQYAARTIRPRLKKFLPEFLHLV 189
Query: 192 PMLEQ--PIEKWTGTRQ------SID----WDSIIAAVLRKGAEVPEIGWCESGEDAAME 239
++ P ++W R SID W + +VL P W G AA +
Sbjct: 190 KSIDNSAPAKEWQQPRGLRHDKLSIDMTKQWPDLDRSVL------PVDEW-NGGSGAAYK 242
Query: 240 VLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPE 299
L TK L NY +RN+P + S LSP+LHFG I AL RKA + P
Sbjct: 243 RLH-----LFTKNLGNYDRERNHP-ETDGTSMLSPFLHFGHIGPLTIALAVRKAIQTNPA 296
Query: 300 AI---DTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQF 356
A + +L++LI REL NF Y+PNYD+ A WA+ ++ +HA D+R +Y+ EQ
Sbjct: 297 AKVSGEAYLDQLITWRELCINFVKYEPNYDTAACADPWAKVTIGEHARDERSPLYSLEQL 356
Query: 357 EKAQTAD 363
E+A+T D
Sbjct: 357 ERAETYD 363
>gi|68076095|ref|XP_679967.1| DNA photolyase FAD binding domain [Plasmodium berghei strain ANKA]
gi|56500825|emb|CAH99772.1| FAD binding domain of DNA photolyase, putative [Plasmodium berghei]
Length = 812
Score = 155 bits (391), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 108/357 (30%), Positives = 180/357 (50%), Gaps = 27/357 (7%)
Query: 21 QGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKN--NVPVAVAFNLFDQFLGAKARQ 78
G+ + + V+ + RD R+ DNW++I+A D A KN N+ N ++F R
Sbjct: 307 NGNENSIKKNVLLLLTRDFRIADNWSIIYAYDMAKKNKCNLLACTYINRKEKFT---ERY 363
Query: 79 LGFMLRGLRLLQRNIEETFQIL---FFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIR 135
+ L+ L+ N+EE F+ L F++ D F+R +V DF L +
Sbjct: 364 INIKLKVLK----NLEEGFKKLNIPFYVIPIFMIDEFMEFLRIHEIKTVVCDFHSLEYQK 419
Query: 136 RCKDKICNRVSDS-VTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPML 194
+ + + + + + +VD+HN++P+W+ S+ E S +T++ KI L +LI+Y L
Sbjct: 420 KFVENLVQMSNKKKIKVLQVDSHNIIPLWITSKMEESSIRTIKPKIQTHLSSFLIEYIKL 479
Query: 195 EQPIEKWTGTRQSIDWDSIIAAV-LRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRL 253
E+ ++ + D S+ + + V C E A E+L + F +L
Sbjct: 480 ER-FDQTIKYPEPFDIVSLYKKLTVNNSCSVLSNFVC--TEKKAKEIL----ENFCKNKL 532
Query: 254 KNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPE-----AIDTFLEEL 308
Y RN+P ++ L PY++ G IS+QRC LE K P + F ++L
Sbjct: 533 DKYSVKRNDP-NYDTINLLIPYINLGIISSQRCILEVNKYALQFPSIHASSGKEYFNDDL 591
Query: 309 IVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPV 365
++++ELADNFC+Y NYD+ GA +WA++SLK H DKR H+Y E F A+T + +
Sbjct: 592 LIKKELADNFCYYNKNYDNFNGAKDWAKESLKKHELDKRNHLYDYEDFRSARTHNDI 648
>gi|83315336|ref|XP_730750.1| DNA photolyase [Plasmodium yoelii yoelii 17XNL]
gi|23490568|gb|EAA22315.1| FAD binding domain of DNA photolyase, putative [Plasmodium yoelii
yoelii]
Length = 849
Score = 155 bits (391), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 110/357 (30%), Positives = 180/357 (50%), Gaps = 27/357 (7%)
Query: 21 QGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKN--NVPVAVAFNLFDQFLGAKARQ 78
G+ + + V+ + RD R+ DNW++I+A D A KN N+ N ++F R
Sbjct: 343 NGNENSIKKNVLLLLTRDFRIADNWSIIYAYDMAKKNKCNLLACTYINRKEKFT---ERY 399
Query: 79 LGFMLRGLRLLQRNIEETFQIL---FFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIR 135
+ L+ L+ N+EE F+ L F++ D F+R +V DF L +
Sbjct: 400 INIKLKVLK----NLEEEFKKLNIPFYVIPIFMIDEFMEFLRIHEIKTVVCDFHSLGYQK 455
Query: 136 RCKDKICNRVSDS-VTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPML 194
+ + + + + I +VD+HN++P+W+ S+ E S +T++ KI L +LI+Y L
Sbjct: 456 QFVENLVQMSNKKKIKILQVDSHNIIPLWITSKMEESSIRTIKPKIQTHLSSFLIEYIKL 515
Query: 195 EQPIEKWTGTRQSIDWDSIIAAV-LRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRL 253
E+ ++ + D S+ + + V C E A E+L + F +L
Sbjct: 516 ER-FDQIIKYPEPFDIVSLYKKLTVNNSCSVLSNFVC--TEKKAREIL----EDFCKNKL 568
Query: 254 KNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPE-----AIDTFLEEL 308
Y RN+P ++ L PY++ G IS+QRC LE K P + F ++L
Sbjct: 569 DKYSVKRNDP-NYDTINLLIPYINLGIISSQRCILEVNKYALQFPSIHASSGKEYFNDDL 627
Query: 309 IVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPV 365
++++ELADNFCFY NYD+ GA +WA++SLK H DKR H+Y E F A+T + +
Sbjct: 628 LIKKELADNFCFYNKNYDNFNGAKDWAKESLKKHELDKRNHLYDYEDFRNARTHNDI 684
>gi|188579437|ref|YP_001922882.1| deoxyribodipyrimidine photo-lyase [Methylobacterium populi BJ001]
gi|179342935|gb|ACB78347.1| Deoxyribodipyrimidine photo-lyase [Methylobacterium populi BJ001]
Length = 476
Score = 155 bits (391), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 124/362 (34%), Positives = 180/362 (49%), Gaps = 17/362 (4%)
Query: 7 PSTAVQPGRIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFN 66
PS +QP RI+ L V+YWM QR R N AL +AV++AN +PV V +
Sbjct: 16 PSRMIQPTRIKPLNDLPARDGASYVLYWMGLSQRARFNPALEYAVEEANGRGLPVLVCYG 75
Query: 67 LFDQFLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVT 126
L + A AR F+L G+ + + + Q E + + A+L++
Sbjct: 76 LAEGIPEANARHWAFLLEGMAEVGPELAKRGIAYVARRQPPVETAL---LYAADAALVIC 132
Query: 127 DFSPLREIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPE 186
D + L+ +RR R + +V+ VVPV AS K E +A+TLR KI +LLPE
Sbjct: 133 DRNYLKPVRRFYADFAARAP--CRVVQVEGEVVVPVETASPKHEVAARTLRPKIRRLLPE 190
Query: 187 YLIDYPMLEQPIEKWT---GTRQSIDWDSI--IAAVLRKGAEVPEIGWCESGEDAAMEVL 241
YL+ P+ E+ + ++D + + A L+ V + + G A L
Sbjct: 191 YLV--PLEERSVAHRADHLSFESTLDLSDVPRLVASLKADQSVRPVRRFKGGTTQAEATL 248
Query: 242 KGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAI 301
+L R +Y R P + A S +SPYLH+GQIS AL+ + A +
Sbjct: 249 ----SHYLDARFNHYAQIRGRP-EAGAASHMSPYLHYGQISPVAIALKVQAAATGGEDDK 303
Query: 302 DTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQT 361
+LEELIVRRELA N +Y+PNYDS + A WARK+L H D R ++YT EQFE+ +T
Sbjct: 304 AAYLEELIVRRELAMNHIYYEPNYDSYEAAPAWARKTLDAHRGDPRPYLYTPEQFERGET 363
Query: 362 AD 363
D
Sbjct: 364 HD 365
>gi|15678924|ref|NP_276041.1| DNA deoxyribodipyrimidine photolyase (photoreactivation)
[Methanothermobacter thermautotrophicus str. Delta H]
gi|2507184|sp|P12769.2|PHR_METTH RecName: Full=Deoxyribodipyrimidine photo-lyase; AltName: Full=DNA
photolyase; AltName: Full=Photoreactivating enzyme
gi|639674|dbj|BAA06411.1| photolyase [Methanothermobacter thermautotrophicus]
gi|2622000|gb|AAB85402.1| DNA deoxyribodipyrimidine photolyase (photoreactivation)
[Methanothermobacter thermautotrophicus str. Delta H]
Length = 445
Score = 154 bits (389), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 123/365 (33%), Positives = 183/365 (50%), Gaps = 40/365 (10%)
Query: 11 VQPGRIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQ 70
+ RIR L D + VVYWM R N AL +A++ AN P+ V F L D
Sbjct: 2 IHAERIRNLNGEEPDLRGSYVVYWMQASVRSHWNHALEYAIETANSLKKPLIVVFGLTDD 61
Query: 71 FLGAKARQLGFMLRGLRLLQRNIEE-TFQILFFLFQGEAEDNIPNFVRE--CGASLLVTD 127
F A +R F++ GLR ++ N+ E Q++ D+ P+ + + A+ VTD
Sbjct: 62 FPNANSRHYRFLIEGLRDVRSNLRERGIQLVV------ERDSPPSVLLKYADDAAAAVTD 115
Query: 128 FSPLREIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEY 187
L + D+ + + + +V+++ +VPV AS+K EYSA T + KI + L +
Sbjct: 116 RGYLDIQKEWVDEAAGALH--IPLTQVESNVIVPVETASDKEEYSAGTFKPKIKRHLKRF 173
Query: 188 LIDYPMLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPE-IGWCESGEDAAMEVLKGSKD 246
++ P+ T S+D L G E + + + ED V +G
Sbjct: 174 MV-------PLRMRTLKMDSLD--------LEPGPEFEDAVRDFRAPEDLEPSVFRGGTS 218
Query: 247 G-------FLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPE 299
FL ++L+ + RN+P+K LS +SPYLHFGQIS AL A +A + CPE
Sbjct: 219 TALSIFSEFLREKLECFERYRNDPVK-NCLSNMSPYLHFGQISPLYLALRASEAGE-CPE 276
Query: 300 AIDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKA 359
FLEELIVRREL+ NF Y +Y S+ EWA+++L DH +D RE+ Y+ + E A
Sbjct: 277 ----FLEELIVRRELSMNFVHYSDSYSSISCLPEWAQRTLMDHVADPREYEYSLRELESA 332
Query: 360 QTADP 364
T DP
Sbjct: 333 STHDP 337
>gi|158333885|ref|YP_001515057.1| deoxyribodipyrimidine photolyase [Acaryochloris marina MBIC11017]
gi|158304126|gb|ABW25743.1| deoxyribodipyrimidine photolyase [Acaryochloris marina MBIC11017]
Length = 465
Score = 154 bits (388), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 125/372 (33%), Positives = 192/372 (51%), Gaps = 38/372 (10%)
Query: 8 STAVQPGRIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNL 67
++ ++ RI++L + + + G V+YWM + QR N AL +A+ +AN PV V F L
Sbjct: 3 NSLIEEERIQILNKQDV-QPGGYVLYWMQQSQRAEYNHALEYAIQRANDLQQPVVVCFGL 61
Query: 68 FDQFLGAKARQLGFMLRGLR-----LLQRNIEETFQILFFLFQGEAEDNIPNFVRECG-- 120
+ G+ R FML GL+ L+QR I+ F + G N E G
Sbjct: 62 MADYPGSNLRHYTFMLEGLQDTEQALIQRGIK------FVMRYG----NPDQIALELGKD 111
Query: 121 ASLLVTDFSPLREIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKI 180
ASL+V D LR R+ +D + + +V++ VVPV AS K +Y+A+T+R +I
Sbjct: 112 ASLVVCDRGYLRFQRQWRDNVAQNAP--CQVVQVESEVVVPVETASVKADYAARTIRPRI 169
Query: 181 NKLLPEYLIDYPMLEQPIEKWTGTRQSIDWDSI----IAAVLRK---GAEVPEIG-WCES 232
++ L +L+ P P++ + +D S+ I AVL K VP + +
Sbjct: 170 HRHLDRFLV--PFASTPVQH---SSLHLDLKSLDLSNIEAVLAKLPLDCSVPPVSSLFQG 224
Query: 233 GEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARK 292
G A E+L + FL K Y RN P + +S +S YLHFGQIS AL+ +
Sbjct: 225 GTTRAKEIL----EKFLQKSFAIYADHRNQP-QTDDVSYMSQYLHFGQISPLYLALQIQS 279
Query: 293 ARKLCPEAIDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYT 352
+ + +DT++EELIVRRELA NF +Y P+YD+ WA+ +L +H D R Y+
Sbjct: 280 MGNVPRDNVDTYIEELIVRRELAMNFAYYTPDYDAYSCLPNWAKTTLDNHRHDPRTPCYS 339
Query: 353 KEQFEKAQTADP 364
EQ ++++T DP
Sbjct: 340 LEQLDESRTEDP 351
>gi|452819842|gb|EME26893.1| deoxyribodipyrimidine photo-lyase isoform 2 [Galdieria sulphuraria]
Length = 505
Score = 154 bits (388), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 117/387 (30%), Positives = 186/387 (48%), Gaps = 51/387 (13%)
Query: 11 VQPGRIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQ 70
V R+RVL + + R V+YWM R+ N+AL +AV AN+ P+ + F L +
Sbjct: 5 VSNQRVRVLNNKPVQESREFVLYWMQAAVRLTYNYALQYAVFSANQLGKPLLICFGLTES 64
Query: 71 FLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSP 130
F A AR F+L GL+ +QR + E ++ +F E E + + A +V D +
Sbjct: 65 FPEANARHYAFLLEGLQDVQRQLAER-KLSMVVFHSEPEQMVEKLFHK--AVQVVVDMNY 121
Query: 131 LREIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKI----NKLLPE 186
LR + + ++ + + S +V+ VVPV + ++K EY+A+T+R K+ NK L
Sbjct: 122 LRVTKNWRQRVASNIDCSFI--QVETECVVPVELVTDKEEYAARTIRPKLWKHANKFLIP 179
Query: 187 Y---------LIDYPMLEQ-PIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDA 236
+ L+D P +++ + G + + L VP + GE
Sbjct: 180 WADTIHVENQLVDIPQIDELTVLDLQGEAKEL------VERLNVDKTVPPVSHFVGGETE 233
Query: 237 AMEVLKGSKDGFLTKRLKNYPTDRNNP------------LKPRA-----LSGLSPYLHFG 279
A L F +L++Y RN+P + RA +S +SPYLHFG
Sbjct: 234 AKRRLAE----FCRSKLRDYEKKRNDPSLNCGKVVFLVFVCWRAKYLCLVSHMSPYLHFG 289
Query: 280 QISAQR--CALEARKARKLCPEAIDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARK 337
IS C ++ +A K C D F+EE+ +RREL+ NFC+Y YD+ WA++
Sbjct: 290 HISPVEIVCQVQQAQASKTCK---DAFIEEVFIRRELSFNFCYYCDKYDAFDCLPTWAKQ 346
Query: 338 SLKDHASDKREHIYTKEQFEKAQTADP 364
++ +H+ D R+ YT EQ E A T DP
Sbjct: 347 TMSEHSKDPRQFSYTLEQLETAVTHDP 373
>gi|310658527|ref|YP_003936248.1| Deoxyribodipyrimidine photo-lyase (DNA photolyase)
(Photoreactivating enzyme) [[Clostridium] sticklandii]
gi|308825305|emb|CBH21343.1| Deoxyribodipyrimidine photo-lyase (DNA photolyase)
(Photoreactivating enzyme) [[Clostridium] sticklandii]
Length = 447
Score = 153 bits (387), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 119/349 (34%), Positives = 178/349 (51%), Gaps = 42/349 (12%)
Query: 31 VVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQ 90
V+YWM QR N AL ++++ +NK +P+ V F + + F A R FML G+ +
Sbjct: 21 VLYWMQASQRSEYNHALEYSIEYSNKLKLPLIVLFIIMEDFPKANFRHFRFMLEGIEDVM 80
Query: 91 RNIEETFQILFFLFQGEAEDNIPNFVREC--GASLLVTDFSPLREIRRCKDKICNRVSDS 148
+ ++ +I + +GEA +P V E AS+L+TDF L+ K I +++ S
Sbjct: 81 NQL-KSRKIKMVIRKGEA---LP-IVNELSKNASILITDFGYLKHEIIMKSNIAQQLNCS 135
Query: 149 VTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYL------------IDYPMLEQ 196
+ V+++ ++PV V S K EY A T+R KINK++ +YL IDYP+ +
Sbjct: 136 ML--SVESNVIIPVEVTSNKEEYGAYTIRPKINKIIDKYLIELNSRLVMQSSIDYPIKSE 193
Query: 197 PIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLKNY 256
I S+ D I + KG V E K KD F+ + + Y
Sbjct: 194 DISDLNSFIDSLKIDKSINESIYKGGSV--------------EAEKYLKD-FIENKAQYY 238
Query: 257 PTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVRRELAD 316
+N+P + S LSPYLHFGQIS AL+ K+ ++ FLEELI RRELA
Sbjct: 239 SELKNHPGMNYS-SNLSPYLHFGQISPLYIALKIIKSD---IKSKKDFLEELITRRELAI 294
Query: 317 NFCFYQPNYDS--LKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTAD 363
N+ +Y NYDS K WA SL H +D ++++Y+ E+ E A+T D
Sbjct: 295 NYIYYNKNYDSDIEKILPSWAYDSLISHQNDLKDYLYSLEELENAKTHD 343
>gi|156095570|ref|XP_001613820.1| deoxyribodipyrimidine photolyase [Plasmodium vivax Sal-1]
gi|148802694|gb|EDL44093.1| deoxyribodipyrimidine photolyase, putative [Plasmodium vivax]
Length = 973
Score = 153 bits (386), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 111/351 (31%), Positives = 177/351 (50%), Gaps = 31/351 (8%)
Query: 25 DKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVP-VAVAF-----NLFDQFLGAKARQ 78
+++R ++ + RD R DNWAL +A + A K + +A + L +F+ AK +
Sbjct: 487 NEQRDALLLLLTRDFRANDNWALTYAYELAKKKGLNLIACTYLNRKEKLTSRFINAKLKV 546
Query: 79 LGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIR--- 135
L + + L+ Q NI LF + D F++ ++ D L + R
Sbjct: 547 LKNLEQALK--QMNIPFYILPLFMI------DEFKEFIKTHHIKVIACDLHVLNDERAFI 598
Query: 136 RCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLE 195
+ ICN+ V + +VD+HNV+P+WV S+ E S +T++ KI LLP +L +Y +L
Sbjct: 599 KSLCHICNK--RKVKVFQVDSHNVIPIWVTSKGEECSVRTIKPKIQALLPTFLTEYVLL- 655
Query: 196 QPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLKN 255
P E+ + D + + A+ L + E A E+L F + L
Sbjct: 656 SPFEQKIKFPEPFDMEEV-ASKLTVTNTCAVVSGAVFTEKKAQELL----SHFCRQVLDK 710
Query: 256 YPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPE-----AIDTFLEELIV 310
Y RN+P A + L PY++ G ISAQRC LE K P ++F ++ I+
Sbjct: 711 YNVKRNDP-NSDAATVLLPYVNMGVISAQRCILEVHKHAYSNPSINAVSGKESFTDDFIM 769
Query: 311 RRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQT 361
R+ELADN+C+Y NY + +G +WA++SLK H +DKRE++Y E F A+T
Sbjct: 770 RKELADNYCYYNRNYCTFEGGRDWAKESLKKHDADKREYLYDYEDFRTAKT 820
>gi|187234364|gb|ACD01434.1| DNA photolyase II [Chrysodeixis chalcites nucleopolyhedrovirus]
gi|195976055|gb|ACG63559.1| DNA photolyase II [Plusia acuta nucleopolyhedrovirus]
Length = 243
Score = 151 bits (382), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 91/221 (41%), Positives = 122/221 (55%), Gaps = 16/221 (7%)
Query: 153 EVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQPIEKWT-----GTRQS 207
+VDAHNVVP WVAS K EYSA +R K+N L YL +P + + + + T
Sbjct: 1 QVDAHNVVPCWVASNKQEYSAMFMRKKLNSKLECYLKPFPPVVRHEYRSSVVLDPCTTTH 60
Query: 208 IDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPR 267
IDW ++A+ V + W E G +A+ VL F+ L Y RNNP+ +
Sbjct: 61 IDWQQLLAS-RDADVSVGPVDWIEPGYISALNVLAR----FIRCNLLKYKMSRNNPVL-K 114
Query: 268 ALSGLSPYLHFGQISAQRC-----ALEARKARKLCPEAIDTFLEELIVRRELADNFCFYQ 322
S +SP+ HFGQIS QR +L+ K I+ ++EE VRRELADNFCFY
Sbjct: 115 TQSNMSPFYHFGQISVQRVMLHLNSLKINKNDSGIDSNINDYIEECFVRRELADNFCFYN 174
Query: 323 PNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTAD 363
NYD+ GA WA+++L H SD R++IY+ QFE QT D
Sbjct: 175 SNYDTFLGAPNWAKETLVIHKSDSRQYIYSLLQFEHNQTHD 215
>gi|260796887|ref|XP_002593436.1| hypothetical protein BRAFLDRAFT_206680 [Branchiostoma floridae]
gi|229278660|gb|EEN49447.1| hypothetical protein BRAFLDRAFT_206680 [Branchiostoma floridae]
Length = 316
Score = 151 bits (382), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 85/213 (39%), Positives = 129/213 (60%), Gaps = 9/213 (4%)
Query: 154 VDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQPIEKWTGTRQSIDWDSI 213
VDAHN+VP W S+K E+ A +RGKI LP YL ++P + + Q +DW S
Sbjct: 1 VDAHNIVPCWETSDKQEHRAYIIRGKIMDKLPTYLTEFPPVCKHPHPSPSKPQPVDWVST 60
Query: 214 IAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLS 273
A+ L VPE+ W G + L + F +RL+ Y DRN P +A S LS
Sbjct: 61 KAS-LEVDRTVPEVTWAMPGSVGGLRQL----ELFCKERLEVYSADRNKP-DHKAQSDLS 114
Query: 274 PYLHFGQ--ISAQRCALEARKARKLCPEAIDTFLEELIVRRELADNFCFYQPN-YDSLKG 330
P+ HFG+ +S QR L ++ + ++++ +++E ++ RE+A+N FY P+ YDSL G
Sbjct: 115 PWYHFGKCHVSVQRSILTVQQFQTEHSQSVEKYIDEAVIWREMAENSAFYNPDRYDSLLG 174
Query: 331 AWEWARKSLKDHASDKREHIYTKEQFEKAQTAD 363
A +WA+K+L+DHA DKR++IY++EQ E+A+T D
Sbjct: 175 APDWAQKTLRDHAGDKRQYIYSREQLEQARTHD 207
>gi|332295845|ref|YP_004437768.1| DNA photolyase FAD-binding protein [Thermodesulfobium narugense DSM
14796]
gi|332178948|gb|AEE14637.1| DNA photolyase FAD-binding protein [Thermodesulfobium narugense DSM
14796]
Length = 443
Score = 151 bits (382), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 118/361 (32%), Positives = 192/361 (53%), Gaps = 35/361 (9%)
Query: 17 RVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKA 76
R+ K + +K ++YWM RV+ N + +A +NK+N+P+ V + +
Sbjct: 6 RIEKVQTFEKVGKYILYWMQGAFRVKYNHSFEYAKYLSNKHNIPLLVLIIVDFSYPEGNF 65
Query: 77 RQLGFMLRGLRLLQRNIEETF--QILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREI 134
R F L GL+ + EET QI + G +D + +++ A +++TD S L +
Sbjct: 66 RSFKFFLEGLKDV---FEETISQQIGINIVVGSFQDVLKSYID--NAKIMITDKSYLPNL 120
Query: 135 RRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPML 194
K+ I + + +TI++VD + V+PV + S+K EY+A T+R KI KLL EY D+ +
Sbjct: 121 INIKNTIYS--ENKITIYQVDTNLVIPVNIVSQKKEYAAYTIRPKILKLLYEYRNDFEEI 178
Query: 195 EQPIEKWTGT----RQSIDWDSIIAAVLRKGAEV-----PEIGWCESGEDAAMEVLKGSK 245
K+ G+ + +D ++ I LRK V P IG G A ++L
Sbjct: 179 -----KYNGSFLKPKTEVDLNN-IENELRKQNLVNVLPAPYIG----GYKEAKKIL---- 224
Query: 246 DGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFL 305
D F++K+ K Y +RNNP K + S +SPYLHFG IS L+ + E +F
Sbjct: 225 DYFVSKKFKYYKDNRNNPEK-ESESNISPYLHFGNISPLEI-LDTLEIFDKSSENYYSFF 282
Query: 306 EELIVRRELADNFCFYQPNYDSLKGAW-EWARKSLKDHASDKREHIYTKEQFEKAQTADP 364
EE+++RRELA NF +Y + ++L+ WA K+ +H DKRE++Y+ E+FE ++T D
Sbjct: 283 EEMVIRRELAHNFTYYSNDLNNLENLLPAWAFKTFYEHKDDKREYVYSLEEFENSKTHDE 342
Query: 365 V 365
+
Sbjct: 343 I 343
>gi|374313608|ref|YP_005060038.1| DNA photolyase FAD-binding protein [Granulicella mallensis
MP5ACTX8]
gi|358755618|gb|AEU39008.1| DNA photolyase FAD-binding protein [Granulicella mallensis
MP5ACTX8]
Length = 487
Score = 151 bits (381), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 126/362 (34%), Positives = 181/362 (50%), Gaps = 30/362 (8%)
Query: 14 GRIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLG 73
R+ V + G+ K + VVYWM R QR RDN AL A++ AN +P F F
Sbjct: 35 ARVTVRRAGAPAKGKC-VVYWMQRAQRGRDNHALDKAIEVANVLGLPCVAYFAGIKNFPH 93
Query: 74 AKARQLGFMLRGLRLLQRNIEE--TFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPL 131
A R F+ +GL +IEE + + F+ + E++ F + A++++ D +P+
Sbjct: 94 ANLRHYAFLNQGLP----DIEEDCAARGVGFVMRRAPEEDHERFFADVDAAMVIGDENPM 149
Query: 132 REIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDY 191
RE R + K+ S V VDA +VP + EK ++SA R ++ + LPE+L DY
Sbjct: 150 REPERWRAKLAK--SLRVPFWTVDADVIVPSKLL-EKAQFSAGVARPRLYRALPEFLHDY 206
Query: 192 PMLEQP--IEKWTGTRQSIDWDSIIAAVLRKGAE-----VPEIGWCESGEDAAMEVLKGS 244
E P ++ W R + D I + R + +P W + G AAM+ L
Sbjct: 207 ---ENPAALKVWRKPR-GLHTDDIREDMTRGWKDFDRSVLPVAAW-QGGHHAAMKRLHL- 260
Query: 245 KDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPE---AI 301
F + L+ Y DRN+P + S LSPYLHFG + AL K P+ A
Sbjct: 261 ---FCGQMLETYDRDRNHP-ELDGSSKLSPYLHFGHLGPLTIALALNAQVKRQPKLAAAR 316
Query: 302 DTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQT 361
D++ ELIV RELA NF YQP YDS A WAR ++ +H D+RE +YT Q E A+T
Sbjct: 317 DSYFNELIVWRELAVNFVRYQPEYDSPGCADNWARATIAEHDRDEREVLYTLAQLEGART 376
Query: 362 AD 363
D
Sbjct: 377 HD 378
>gi|170744406|ref|YP_001773061.1| deoxyribodipyrimidine photo-lyase [Methylobacterium sp. 4-46]
gi|168198680|gb|ACA20627.1| Deoxyribodipyrimidine photo-lyase [Methylobacterium sp. 4-46]
Length = 465
Score = 150 bits (380), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 131/363 (36%), Positives = 184/363 (50%), Gaps = 24/363 (6%)
Query: 11 VQPGRIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFD- 69
++ RIR L Q + R V+Y M + R RDN AL HA+D+AN+ +PV V F L D
Sbjct: 7 IEAARIRALNQAPPRQGRY-VLYLMQQAMRSRDNPALEHAIDEANRLGLPVVVGFGLLDG 65
Query: 70 --QFLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTD 127
F A AR F+L+GL + +E I F L + + A+L V D
Sbjct: 66 GRTFPEANARHYAFLLQGLAAARAGVERR-GIAFVLRR--STPAAAALALGAEAALAVLD 122
Query: 128 FSPLREIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEY 187
L R +I ++ + +V+ VVPV AS+K E++A+TLR K+ +L Y
Sbjct: 123 RGYLTVQRAWSAEIARGLA--CPVVQVEGDVVVPVETASDKHEFAARTLRPKLQRLWDSY 180
Query: 188 LIDYPMLEQPIEKWT-GTRQSIDWD-----SIIAAVLRKGAEVPEIGWCESGEDAAMEVL 241
L P+ + + G + D D + +AA+ A P + GED AM L
Sbjct: 181 LA--PLRARRVAHAADGLALASDLDVSDPEAALAALTLDRAVRP-VRRFRGGEDEAMARL 237
Query: 242 KGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAI 301
D +L Y T RN P + A S +SPYLHFGQIS AL+ R A PE
Sbjct: 238 ----DAYLAGPFAQYGTVRNRP-EAGAASHMSPYLHFGQISPVAIALKVRAAAAGGPEDK 292
Query: 302 DTFLEELIVRRELADNFCFYQPNYDSLKGAW-EWARKSLKDHASDKREHIYTKEQFEKAQ 360
++LEELIVRRELA N YQP YD + A +WAR++L +HA D+R+ +Y + E+ +
Sbjct: 293 ASYLEELIVRRELAMNHVHYQPGYDRYESAVPDWARRALAEHAGDRRDPLYDEAALEEGR 352
Query: 361 TAD 363
T D
Sbjct: 353 THD 355
>gi|428171171|gb|EKX40090.1| hypothetical protein GUITHDRAFT_164772 [Guillardia theta CCMP2712]
Length = 779
Score = 147 bits (372), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 121/384 (31%), Positives = 178/384 (46%), Gaps = 57/384 (14%)
Query: 31 VVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQ 90
V+YWM QR R+N AL HA+ +N P+ V F LF+++ A R FM+ GLR +
Sbjct: 214 VLYWMSAAQRTRENHALQHAISISNHMQKPLWVIFCLFEKYPEANERHFTFMVEGLREVS 273
Query: 91 RNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICNRVSDSVT 150
N++ I F + +G D P + + + V D R +R + ++ + S +
Sbjct: 274 LNLQRQ-GIKFTVVKGRPPD--PILLLQDKSCCTVLDCGYTRTVRGWRKELLAKSSTKIV 330
Query: 151 IHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLID-------YPMLEQPIEKWTG 203
+ V+ VVP VAS+ E +A T R K++K + +YL+ +P ++ E
Sbjct: 331 L--VEGEVVVPTDVASKVQEPAAATFRPKVSKWIDKYLVSAGEQRVLFPSVDMDFESNFD 388
Query: 204 TR-------QSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVL-KGSKDGFLTKRLKN 255
S+ D I++ ++ P + + GE A E+L K G K +
Sbjct: 389 KHDDLELMDMSLPLDEIMSKLVVDRTVPPCSCFLQGGETRAEELLSKFLTSGADGKAINE 448
Query: 256 YPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEA---IDTFLEELIVRR 312
Y RN+P R S LSPYL FGQIS R A++AR+ PE +D FLEELIVRR
Sbjct: 449 YQLKRNDP-SLRKQSHLSPYLQFGQISPVRIAMKAREFASKFPEHRQDVDVFLEELIVRR 507
Query: 313 ELADNFCFYQPNYDS-----------------------LKG----------AWEWARKSL 339
E A NF + P+YDS L G + A
Sbjct: 508 EFAVNFVLHNPSYDSSVAPPLVPHLTTLTLPRSDLCPCLTGREVASGPGLSSSSSADSCP 567
Query: 340 KDHASDKREHIYTKEQFEKAQTAD 363
+DHA +KR H YT+EQ E+ +T D
Sbjct: 568 RDHAHEKRTHTYTEEQLEQGRTHD 591
>gi|225848662|ref|YP_002728825.1| deoxyribodipyrimidine photo-lyase [Sulfurihydrogenibium azorense
Az-Fu1]
gi|225644140|gb|ACN99190.1| deoxyribodipyrimidine photo-lyase [Sulfurihydrogenibium azorense
Az-Fu1]
Length = 452
Score = 147 bits (372), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 108/344 (31%), Positives = 179/344 (52%), Gaps = 27/344 (7%)
Query: 31 VVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQ 90
++Y M R N++L A+ +ANK N P+ V+F + D++ + R FM+ G+ +
Sbjct: 21 ILYSMEASLREDFNFSLEFAIQKANKLNKPLLVSFFITDKYKHSNQRYYKFMIEGILKTK 80
Query: 91 RNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICNRVSDSVT 150
+ IEE I F + + + + +E A +V D + L+ R+ ++ I + V
Sbjct: 81 KAIEER-GIKFVIQKDDYVNGTLKLSKE--AVCIVLDKNYLKTQRKWRENIAK--ASQVA 135
Query: 151 IHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQPIEKWTGTRQSIDW 210
+++++ VVP+ V S+K A R ++NK++ +L +P+EK S D
Sbjct: 136 VYQLENDVVVPIQVVSDKPIPYAYLYRDRLNKVIDRFL-------KPVEKIDLKVNSKDL 188
Query: 211 D---------SIIAAVLRKGAEVPEIG-WCESGEDAAMEVLKGSKDGFLTKRLKNYPTDR 260
D ++L V + + G D A + LK F+ K+L Y R
Sbjct: 189 DVESLEFKTPDEFLSILNIDKTVSTVDKYFVGGYDEAEKRLKE----FIEKKLYKYKEFR 244
Query: 261 NNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVRRELADNFCF 320
++P K S LSPYLHFGQIS + LE K E + +F ELIV REL+ NFC+
Sbjct: 245 SDPSKDYT-SNLSPYLHFGQISPLKIVLEVLKHYDKNDENVVSFFNELIVWRELSRNFCW 303
Query: 321 YQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADP 364
Y P Y+ +G +WAR++L++H DKR+++Y+ ++FE+A+T DP
Sbjct: 304 YNPLYNQYEGIPQWARQTLEEHKKDKRDYVYSLQEFEEAKTHDP 347
>gi|320102273|ref|YP_004177864.1| DNA photolyase FAD-binding protein [Isosphaera pallida ATCC 43644]
gi|319749555|gb|ADV61315.1| DNA photolyase FAD-binding protein [Isosphaera pallida ATCC 43644]
Length = 486
Score = 147 bits (370), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 114/364 (31%), Positives = 179/364 (49%), Gaps = 18/364 (4%)
Query: 15 RIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGA 74
R+R+L QG+ V+YWM R QR + N AL A+ N +PV F L + A
Sbjct: 13 RVRLLVQGAPVADGSCVLYWMQRAQRAKANPALNLAIALGNSLKLPVWAVFGLTPSYPEA 72
Query: 75 KARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREI 134
+ R F++ GL Q + + + + G+ + V E +++V D +P+R I
Sbjct: 73 QRRHYRFLIEGLVDTQADAAQ-LGVPLVVRLGDPPAVVLKAVEESRPAVVVGDENPVR-I 130
Query: 135 RRC-KDKICNRVSDSVTIHEVDAHNVVPVWVAS--EKLEYSAKTLRGKINKLLPEYLIDY 191
+C + K+ +S + V +S K EY+A+T+R KI+++L E+L
Sbjct: 131 GQCWRAKVAESLSQRARPIPFPVVDADVVVPSSLFPKEEYAARTIRPKIHRMLHEWLKPL 190
Query: 192 PMLEQ----PIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDG 247
P+++ P ++ +G + I L V +G + E + +
Sbjct: 191 PVIKAKTPWPTDE-SGQGGPPQGEPITVEHLMGQIRVGGVGEVPNYPGGTREAERRLQR- 248
Query: 248 FLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKL------CPEAI 301
F+ +RL Y DRN P+ P S LS +LHFG IS AL +K + ++
Sbjct: 249 FVAQRLARYGKDRNEPI-PYMTSELSAHLHFGHISPLTIALAVQKEAEEAGVAAETKASV 307
Query: 302 DTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQT 361
+++LEE+IVRRELA NF P YDSL G +WAR +L HA+D R +YT Q E+A+T
Sbjct: 308 ESYLEEMIVRRELAINFVARNPKYDSLAGCPDWARATLAKHANDPRPKLYTATQLERAET 367
Query: 362 ADPV 365
DP+
Sbjct: 368 HDPL 371
>gi|383765520|ref|YP_005444501.1| deoxyribodipyrimidine photo-lyase [Phycisphaera mikurensis NBRC
102666]
gi|381385788|dbj|BAM02604.1| deoxyribodipyrimidine photo-lyase [Phycisphaera mikurensis NBRC
102666]
Length = 473
Score = 145 bits (365), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 124/368 (33%), Positives = 182/368 (49%), Gaps = 24/368 (6%)
Query: 7 PSTAVQPGRIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFN 66
PS + RI L V+Y M R R N AL A AN+ + V +
Sbjct: 5 PSPDIHADRIAALNDAEEKADGAYVLYVMEASMRSRMNHALELAAQHANRLGKRLLVLYP 64
Query: 67 LFDQFLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVT 126
L GA RQ FML+G+ L R+ +I F + +G + + + A +V
Sbjct: 65 LVGDTFGAHRRQKHFMLQGVGPL-RDKLTARRIRFAVVEGGMAETALRYAED--ACRVVL 121
Query: 127 DFSPLREIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPE 186
D LR+ R +D++ N V V++ VVPV AS+K E++A+T+R KI+K L +
Sbjct: 122 DAGYLRDHRAWRDEVGNEAEVPVEE--VESDVVVPVGTASDKKEHAARTIRPKIHKRLDD 179
Query: 187 YLIDYPMLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESG----------EDA 236
+L+ E +EK T D + +++ + G + +G+ E G EDA
Sbjct: 180 FLVALEPTE--LEKDATTMGIPDDEVDLSSDAKIGEALDRLGFGEGGVPPVPLFRGGEDA 237
Query: 237 AMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKL 296
E+L + FL+ Y RN P + +S +S YLHFG +S R AL AR KL
Sbjct: 238 GEEML----ERFLSTANGVYSDHRNQP-QTDDVSHMSKYLHFGNLSPIRIALAARD--KL 290
Query: 297 CPEAIDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQF 356
+ D FLEELIVRREL NF ++ +YD +AR++L +H D+REH+YT++Q
Sbjct: 291 SGDDRDDFLEELIVRRELTHNFVHFEEDYDKFSQLPAFARETLDEHRDDEREHVYTRQQL 350
Query: 357 EKAQTADP 364
E A T DP
Sbjct: 351 EDADTHDP 358
>gi|383790370|ref|YP_005474944.1| deoxyribodipyrimidine photolyase [Spirochaeta africana DSM 8902]
gi|383106904|gb|AFG37237.1| deoxyribodipyrimidine photolyase [Spirochaeta africana DSM 8902]
Length = 466
Score = 145 bits (365), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 119/364 (32%), Positives = 170/364 (46%), Gaps = 23/364 (6%)
Query: 12 QPGRIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQF 71
Q R+ L S V+YWM R N AL +AV AN +P+AV F L +
Sbjct: 3 QRERVTTLGAASAASPHRYVLYWMQSSLRSTWNHALEYAVHHANTRGLPLAVVFCLTPDY 62
Query: 72 LGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPL 131
A+ R F+L G+R + + I + G+ I R A+L V D L
Sbjct: 63 PDAQERHYRFLLEGIRETAAKLADR-GIRLQVVAGDPPQIIAGLSRH--AALTVLDRGYL 119
Query: 132 REIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDY 191
R + + + + +V+++ VVPV A K YSA LR +I LL +L
Sbjct: 120 RVHAGWYRYLQSHAASPLV--QVESNVVVPVHHAYHKEAYSAGILRPRIQPLLQHFLQPI 177
Query: 192 PMLEQP------IEKWTGTRQSIDWDSI-----IAAVLRKGAEVPEIGWCESGEDAAMEV 240
P +E +E + +SID + + I+ + + GE +A +
Sbjct: 178 PEVELKNSAAIDVEDFLSDIRSIDTERVTNPDYISGFFSMDSVATAVDCFSGGELSAQQR 237
Query: 241 LKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEA 300
+ FL +RL + DRN+P + S LSPYLHFG IS + AL+AR+ E
Sbjct: 238 WQD----FLDRRLDRFHLDRNDPAAAGS-SLLSPYLHFGMISPVQMALDARECGS--SEG 290
Query: 301 IDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQ 360
+D EELIVRREL+ NF Y YDS +WA ++L +HA D RE+IY E+F A
Sbjct: 291 VDVLFEELIVRRELSCNFTTYNQAYDSPDCLPDWAVRTLAEHAGDPREYIYRYEEFALAD 350
Query: 361 TADP 364
T DP
Sbjct: 351 THDP 354
>gi|269122091|ref|YP_003310268.1| DNA photolyase FAD-binding protein [Sebaldella termitidis ATCC
33386]
gi|268615969|gb|ACZ10337.1| DNA photolyase FAD-binding protein [Sebaldella termitidis ATCC
33386]
Length = 453
Score = 144 bits (364), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 112/357 (31%), Positives = 192/357 (53%), Gaps = 16/357 (4%)
Query: 13 PGRIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFL 72
RI+ + +DK ++YWM R R N +L +A+ AN + V F +F
Sbjct: 3 ENRIKSINNKKMDKNGDFIIYWMQRSIRSSYNHSLEYAIHLANDLKKNLLVIFCFDRKFS 62
Query: 73 GAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASL-LVTDFSPL 131
R F+ L+ ++N+++ I F + ++ I + S+ ++TD + L
Sbjct: 63 EMNERSCYFLFESLKDAEKNLKDR-GIRFIVL--DSSPLITKILEYSKRSVCIITDRAYL 119
Query: 132 REIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYL-ID 190
+ +R+ ++++ +VS V + ++++ VVP+ +AS K EYSA+TLRGK++K+L YL D
Sbjct: 120 KYLRKIREEVGEKVS--VRMIQIESDVVVPIEIASLKEEYSARTLRGKLHKVLDFYLNKD 177
Query: 191 YPMLEQPIEKWTGTRQSIDWDSI--IAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGF 248
+ + + + D + I I L V + + GE+ A ++L + F
Sbjct: 178 FEYTKYEMNYLDEIKTDFDLEKIHEIIESLNIDKTVRKSNYFTGGENTAKKIL----ENF 233
Query: 249 LTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEEL 308
++++L+ Y RNNP + S LSPYLHFG IS A E K+ K E+++ FLEEL
Sbjct: 234 ISEKLEGYSKFRNNP-ELEYQSNLSPYLHFGNISPLFVAKEISKSEK-NRESLEEFLEEL 291
Query: 309 IVRRELADNFCFYQPNYDSLKG-AWEWARKSLKDHASDKREHIYTKEQFEKAQTADP 364
IVRRELA NF +Y +YD + + WA +++ H +D++E++Y+ E EK++T D
Sbjct: 292 IVRRELAINFIYYNQDYDKFQNMTYLWAYETMNKHKNDQKEYVYSLEILEKSETHDE 348
>gi|83816766|ref|YP_445872.1| deoxyribodipyrimidine photolyase [Salinibacter ruber DSM 13855]
gi|83758160|gb|ABC46273.1| deoxyribodipyrimidine photolyase [Salinibacter ruber DSM 13855]
Length = 462
Score = 142 bits (359), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 113/361 (31%), Positives = 184/361 (50%), Gaps = 24/361 (6%)
Query: 13 PGRIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFL 72
P RI+ L + + V+YWM + QR + N AL A+ A++ +P+ V + D F
Sbjct: 5 PDRIQPLNDKGVQEGARYVLYWMEQSQRAQHNPALERALHHASETGLPLLVVCGVTDDFP 64
Query: 73 GAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLR 132
A R F+L GL+ ++ + + + + +G +D A++LVTD LR
Sbjct: 65 EATLRHHTFLLEGLQETKQRLADR-GLKLVVREGAPDDV--ALAHAGAAAVLVTDRGYLR 121
Query: 133 EIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYP 192
++ + ++ + +V+ VVPV ++K EY+A+T+R KI++ L L
Sbjct: 122 HQKQWRARVAEEAP--CRVEQVEGDVVVPVETVTDKAEYAARTIRPKIHEHLERCL---- 175
Query: 193 MLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSK------- 245
L +P+ T S+D D L A V + + G A ++ G
Sbjct: 176 QLPEPVPVET---PSLDLDIDSGRSLDDIAAVTDQMDLDRGVGAVSDLYPGGVSEAEAIL 232
Query: 246 DGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEA-IDTF 304
D FL + L Y +RN + A+S +S YLH+GQIS A + R+A PE+ I+++
Sbjct: 233 DDFLAEHLDGYDENRNQ-IHSHAVSHMSKYLHYGQISPVWLAQQVRRAE--GPESDIESY 289
Query: 305 LEELIVRRELADNFCFYQPN-YDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTAD 363
+EEL+VRREL N ++P+ YDS EWAR+SL +HA D+RE++Y+ ++ E T D
Sbjct: 290 IEELVVRRELTMNHVHFRPDTYDSYTCLPEWARESLAEHADDEREYVYSLDELEGGTTHD 349
Query: 364 P 364
P
Sbjct: 350 P 350
>gi|116625724|ref|YP_827880.1| deoxyribodipyrimidine photo-lyase type II [Candidatus Solibacter
usitatus Ellin6076]
gi|116228886|gb|ABJ87595.1| Deoxyribodipyrimidine photo-lyase type II [Candidatus Solibacter
usitatus Ellin6076]
Length = 456
Score = 142 bits (358), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 113/355 (31%), Positives = 171/355 (48%), Gaps = 23/355 (6%)
Query: 15 RIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGA 74
R+R+L + + V+YW ++RV N AL+HA + AN+ ++P+ V L + A
Sbjct: 4 RVRLLNDRPVRQGGKYVLYWCRWNRRVEANHALLHAAETANRMDLPLVVYERLSCAYPTA 63
Query: 75 KARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVREC---GASLLVTDFSPL 131
R F+L G+ Q + + + ++FQ + + R+ A+++VTD L
Sbjct: 64 CDRFHTFVLEGVPHFQAQLRKLG--IPYIFQLPRRKTVRDERRDAVLRDAAVVVTD-DCL 120
Query: 132 REIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDY 191
R R V + VD +VPV + Y+A ++R +I++LLP+YL
Sbjct: 121 RAAPRL----------DVRLEAVDGSCIVPVGAIPGR-SYAAYSIRPRIHRLLPKYLKAA 169
Query: 192 PMLE---QPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGF 248
P LE + E++ + +I A L E+ + + F
Sbjct: 170 PALEIRRRSRERFEDLHTEVSAPNI--ASLVAECEIDHGVRASTTFPGGRMAAEAGLQRF 227
Query: 249 LTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEEL 308
L +RL+ Y D+N P A S LSPYLH+G I A AL R+ D FLEEL
Sbjct: 228 LEERLRRYARDKNEP-SLHATSELSPYLHYGHIGALEVALAVREHAAAHKLIADEFLEEL 286
Query: 309 IVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTAD 363
IVRRELA NF Y P DSL +WARK+++DH D R+ +Y + +FE A T D
Sbjct: 287 IVRRELAHNFARYAPRLDSLDVLPDWARKTIEDHRRDTRDPVYGRAEFEGAATHD 341
>gi|170750160|ref|YP_001756420.1| deoxyribodipyrimidine photo-lyase [Methylobacterium radiotolerans
JCM 2831]
gi|170656682|gb|ACB25737.1| Deoxyribodipyrimidine photo-lyase [Methylobacterium radiotolerans
JCM 2831]
Length = 462
Score = 141 bits (356), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 122/366 (33%), Positives = 184/366 (50%), Gaps = 27/366 (7%)
Query: 10 AVQPGRIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFD 69
A+Q R+R+L V+Y + + R N AL A+++AN+ ++PV F L D
Sbjct: 2 AIQGERVRILNDVEPGGDGAYVLYLLQQANRATFNPALELAIEEANRLDLPVVACFGLLD 61
Query: 70 QFLG---AKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVT 126
G A AR F+L+GL + +E+ + + F+ + + I + E A+LLV
Sbjct: 62 GASGFPEANARHYAFLLQGLADAKAGLEK--RGVGFVMRKCSPAEIAIALAE-DAALLVL 118
Query: 127 DFSPLREIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPE 186
D L + +I V + +V+ VVPV AS K EY+A+TLR K+N+L
Sbjct: 119 DRGYLAIQKGWYREIAAAVKTRIV--QVEGDVVVPVETASPKHEYAARTLRPKLNRLWDP 176
Query: 187 YLIDYPMLEQPIEKWTGTRQSI-------DWDSIIAAVLRKGAEVPEIGWCESGEDAAME 239
+L P+ + + K + R ++ D ++++A + EV + GE A +
Sbjct: 177 FLA--PLKPRRV-KHSADRLTLKSAIDVSDPEAVLAGMTLD-REVGPVRRFTGGETQARK 232
Query: 240 VLKGS-KDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCP 298
LK KDGF Y RN P + A S +SPYLHFGQIS AL R+A+
Sbjct: 233 RLKAFLKDGF-----SGYGAGRNMP-EAAAASHMSPYLHFGQISPVEIALAVREAKVGDS 286
Query: 299 EAIDTFLEELIVRRELADNFCFYQPNYDSL-KGAWEWARKSLKDHASDKREHIYTKEQFE 357
+ +LEELIVRRELA N +Y YD + +WARK+L +HA D+R H Y++ Q
Sbjct: 287 DDRGAYLEELIVRRELAMNHVYYTEGYDDYDRAVPDWARKTLAEHARDERPHAYSEAQLA 346
Query: 358 KAQTAD 363
+T D
Sbjct: 347 AGETHD 352
>gi|303276170|ref|XP_003057379.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226461731|gb|EEH59024.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 431
Score = 140 bits (354), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 116/347 (33%), Positives = 165/347 (47%), Gaps = 27/347 (7%)
Query: 31 VVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLG--AKARQLGFMLRGLRL 88
V+ W+ QR N AL A +AN + VPV F F G + AR L FM GL
Sbjct: 4 VLLWVQSAQRASHNEALELACARANVHGVPVVAVFGGTAGFPGGGSGARHLRFMYEGLCE 63
Query: 89 LQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICNRVSDS 148
L+ + T + F GE D + R A +VTD R +RR ++K+ V +
Sbjct: 64 LEDALARTRGVRLLGFAGEVPDVVIAASRR--AVEVVTDAGYTRTLRRWREKVAGGVQCA 121
Query: 149 VTIHEVDAHNVVPVWV---ASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQPIEKWTGTR 205
T EV+ V P++ + + E +A TLR KI L +G
Sbjct: 122 TT--EVECDVVAPLYAPGGGAGRGEPAAATLRPKIWPRLEALASREATTTTLALAASGAE 179
Query: 206 QSIDWDSIIAAVLRKGAEVPEI------GWCESGEDAAMEVLKGSKDGFLTKRLKNYPTD 259
++++ AA+ A P + G+ GE A L + FL++RL +Y +
Sbjct: 180 EALELVGGAAAM----AAFPRLPVPPCPGYHAGGEAEAHRKL----EVFLSRRLDDYASK 231
Query: 260 RNNPLKPRALSGLSPYLHFGQISA---QRCALEARKARKLCPEAIDTFLEELIVRRELAD 316
RN+P S LSP++H+GQIS R ALE ++ ++D FL+EL++RRELA
Sbjct: 232 RNDP-GLGLQSHLSPHIHYGQISVVYVTRRALEVKRRDPRHARSVDVFLDELVIRRELAI 290
Query: 317 NFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTAD 363
NF P YDS G WAR +L DHA D R YT+E+FE+ T D
Sbjct: 291 NFVLNNPKYDSYDGLPRWARITLADHAGDARRWSYTREEFERGLTHD 337
>gi|70934909|ref|XP_738613.1| deoxyribodipyrimidine photolyase (photoreactivating enzyme, DNA
photolyase) [Plasmodium chabaudi chabaudi]
gi|56514975|emb|CAH79340.1| deoxyribodipyrimidine photolyase (photoreactivating enzyme, DNA
photolyase), putative [Plasmodium chabaudi chabaudi]
Length = 368
Score = 140 bits (353), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 100/324 (30%), Positives = 165/324 (50%), Gaps = 27/324 (8%)
Query: 53 QANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQRNIEETFQIL---FFLFQGEAE 109
+ NK N+ N +QF R + L+ L+ N+EE F+ L F++
Sbjct: 1 KKNKCNLLACTYINRKEQF---TERHINIKLKVLK----NLEEEFKKLNIPFYVIPIFMI 53
Query: 110 DNIPNFVRECGASLLVTDFSPLREIRRCKDKICNRVSDS-VTIHEVDAHNVVPVWVASEK 168
D F+R +V DF PL ++ + + + + + + +VD+HN++P+W+ S+
Sbjct: 54 DEFMEFLRIQEIKTVVCDFHPLEYQKQFVENLVHMSNKKKIKVLQVDSHNIIPLWMTSKM 113
Query: 169 LEYSAKTLRGKINKLLPEYLIDYPMLEQPIEKWTGTRQSIDWDSIIAAV-LRKGAEVPEI 227
E S +T++ KI L +LI+Y LE+ ++ + D +S+ + + V
Sbjct: 114 EESSTRTIKPKIQAHLSSFLIEYIKLER-FDQTIKYPEPFDIESLYKKLTVNNSCSVISD 172
Query: 228 GWCESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCA 287
C E A +VL + F +L Y RN+P ++ L PY++ G IS+QRC
Sbjct: 173 FVC--TEKKARDVL----EDFCKNKLDKYGVKRNDP-NYDTINLLMPYINLGIISSQRCI 225
Query: 288 LEARKARKLCPEAIDT------FLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKD 341
LE K P +I T F ++L++++ELADNFC+Y NYD+ GA +WA++SLK
Sbjct: 226 LEVNKYALQFP-SIHTSSGKEYFNDDLLIKKELADNFCYYNKNYDNFNGAKDWAKESLKK 284
Query: 342 HASDKREHIYTKEQFEKAQTADPV 365
H DKR H+Y E F A+T + +
Sbjct: 285 HELDKRSHLYDYEDFRNARTHNDI 308
>gi|294507782|ref|YP_003571840.1| deoxyribodipyrimidine photo-lyase [Salinibacter ruber M8]
gi|294344110|emb|CBH24888.1| Deoxyribodipyrimidine photo-lyase [Salinibacter ruber M8]
Length = 462
Score = 140 bits (353), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 112/361 (31%), Positives = 183/361 (50%), Gaps = 24/361 (6%)
Query: 13 PGRIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFL 72
P RI+ L + + V+YWM + QR + N AL A+ A++ +P+ V + D F
Sbjct: 5 PDRIQPLNDKGVQEGARYVLYWMEQSQRAQHNPALERALHHASETGLPLLVVCGVTDDFP 64
Query: 73 GAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLR 132
A R F+L GL+ ++ + + + + +G +D A++LVTD LR
Sbjct: 65 EATLRHHTFLLEGLQETKQRLADR-GLKLVVREGAPDDV--ALAYAGAAAVLVTDRGYLR 121
Query: 133 EIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYP 192
R+ + ++ + +V+ VVPV ++K EY+A+T+R K+++ L L
Sbjct: 122 HQRQWRARVAEEAP--CRVEQVEGDVVVPVETVTDKAEYAARTIRPKMHEHLERCL---- 175
Query: 193 MLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSK------- 245
L +P+ T S+D D L V + + G A ++ G
Sbjct: 176 QLPEPVPVET---PSLDLDIDSGRSLDDIEAVTDQMDLDRGVGAVSDLYPGGVSEAEAIL 232
Query: 246 DGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEA-IDTF 304
D FL + L Y +RN + A+S +S YLH+GQIS A + R+A PE+ I+++
Sbjct: 233 DDFLAEHLDGYDENRNQ-IHSHAVSHMSKYLHYGQISPVWLAQQVRRAE--GPESDIESY 289
Query: 305 LEELIVRRELADNFCFYQPN-YDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTAD 363
+EEL+VRREL N ++P+ YDS EWAR+SL +HA D+RE++Y+ ++ E T D
Sbjct: 290 IEELVVRRELTMNHVHFRPDTYDSYTCLPEWARESLAEHADDEREYVYSLDELEGGTTHD 349
Query: 364 P 364
P
Sbjct: 350 P 350
>gi|293652307|gb|ADE60792.1| CPD photolyase [Spodoptera exigua]
Length = 162
Score = 140 bits (353), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 83/170 (48%), Positives = 106/170 (62%), Gaps = 14/170 (8%)
Query: 163 WVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQPIEKWTGTR----QSIDWDSIIAAVL 218
WVAS+K EYSA+T+R KIN L EYL ++P PI K T +SIDWD I +
Sbjct: 3 WVASDKQEYSARTIRNKINSKLGEYLTEFP----PIIKHPYTAKFEPESIDWDEAIVS-R 57
Query: 219 RKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHF 278
V + W G D A+++LK FL +RLK + T RN+P K ALS LSP+ HF
Sbjct: 58 EADKNVGPVDWARPGYDNALKMLKS----FLDQRLKVFATKRNDPTKD-ALSNLSPWFHF 112
Query: 279 GQISAQRCALEARKARKLCPEAIDTFLEELIVRRELADNFCFYQPNYDSL 328
GQIS QR AL ++ + E+++ FLEE IVRRELADNFCFY +YDS+
Sbjct: 113 GQISVQRVALCVQEHKGKHTESVNAFLEEAIVRRELADNFCFYCEHYDSI 162
>gi|254561673|ref|YP_003068768.1| deoxyribodipyrimidine photolyase [Methylobacterium extorquens DM4]
gi|254268951|emb|CAX24912.1| deoxyribodipyrimidine photolyase (DNA photolyase) [Methylobacterium
extorquens DM4]
Length = 467
Score = 140 bits (352), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 124/367 (33%), Positives = 176/367 (47%), Gaps = 25/367 (6%)
Query: 10 AVQPGRIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFD 69
A+QP RIRVL + G V+Y M + RV N AL A+++AN+ +P+ V F L D
Sbjct: 2 AIQPARIRVLNDAKPREGAGYVLYLMQQAMRVPFNPALELAIEEANRLELPLLVCFGLLD 61
Query: 70 Q---FLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVT 126
F A AR F+L+GL +E+ I F L + + + A+LLV
Sbjct: 62 GANGFPEANARHYAFLLQGLADAAAALEKR-GIAFLLRRATPAEVAIDL--SADAALLVL 118
Query: 127 DFSPLREIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPE 186
D L +R I I +V+ VVP+ S K EY+A+TLR K+ KL +
Sbjct: 119 DRGYLAIQKRWYGAIEREAQ--CRIVQVEGDVVVPLETVSTKHEYAARTLRPKLRKLWDD 176
Query: 187 YL-------IDYPM--LEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAA 237
YL +D+P L Q ++ G S D + ++A + P + +AA
Sbjct: 177 YLEPVEPRGVDHPAKGLIQRLKLKDGLDVS-DPEKLLAKLTLDTTVGPVKRFRGGHTEAA 235
Query: 238 MEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLC 297
G + FL Y RN P + A S +SPYLHFG IS AL R A+
Sbjct: 236 -----GHLERFLEHAFAGYGAGRNKP-EAGAASHMSPYLHFGHISPVEIALAIRAAKDAD 289
Query: 298 PEAIDTFLEELIVRRELADNFCFYQPNYDSL-KGAWEWARKSLKDHASDKREHIYTKEQF 356
+ +LEELIVRRELA N F+ YD + +WARK+L +HA D R +Y++E+
Sbjct: 290 DDDRSAYLEELIVRRELAMNHVFHTQGYDDYARAVPDWARKTLAEHADDPRPKLYSEEEL 349
Query: 357 EKAQTAD 363
+T D
Sbjct: 350 AAGKTHD 356
>gi|240139079|ref|YP_002963554.1| deoxyribodipyrimidine photolyase (DNA photolyase) [Methylobacterium
extorquens AM1]
gi|418058150|ref|ZP_12696129.1| DNA photolyase FAD-binding [Methylobacterium extorquens DSM 13060]
gi|240009051|gb|ACS40277.1| deoxyribodipyrimidine photolyase (DNA photolyase) [Methylobacterium
extorquens AM1]
gi|373568265|gb|EHP94215.1| DNA photolyase FAD-binding [Methylobacterium extorquens DSM 13060]
Length = 467
Score = 140 bits (352), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 124/363 (34%), Positives = 176/363 (48%), Gaps = 17/363 (4%)
Query: 10 AVQPGRIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFD 69
A+QP RIRVL + G V+Y M + RV N AL A+++AN+ +P+ V F L D
Sbjct: 2 AIQPARIRVLNDVKPREGAGYVLYLMQQAMRVPFNPALELAIEEANRLKLPLLVCFGLLD 61
Query: 70 Q---FLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVT 126
F A AR F+L+GL +E+ I F L + + + A+LLV
Sbjct: 62 GANGFPEANARHYSFLLQGLADAAAALEKR-GIAFLLRRATPAEIAIDL--SADAALLVL 118
Query: 127 DFSPLREIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPE 186
D L +R +I I +V+ VVP+ AS K EY+A+TLR K+ KL +
Sbjct: 119 DRGYLAIQKRWYGEIEREAQ--CRIVQVEGDVVVPLETASTKHEYAARTLRPKLRKLWDD 176
Query: 187 YL--IDYPMLEQPIE---KWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVL 241
YL ++ ++ P E K + +D S +L K A +G + E
Sbjct: 177 YLEPVEPRQVDHPAEGLIKRLKLKDGLD-ASDPEKLLAKLALNTTVGPVKRFRGGYTEA- 234
Query: 242 KGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAI 301
G FL Y RN P + A S +SPYLHFG IS AL R A+ +
Sbjct: 235 AGHLKRFLEHAFAGYGAGRNKP-EAGAASHMSPYLHFGHISPVEIALAIRAAKDADDDDR 293
Query: 302 DTFLEELIVRRELADNFCFYQPNYDSL-KGAWEWARKSLKDHASDKREHIYTKEQFEKAQ 360
+LEELIVRRELA N F+ YD + +WARK+L +HA D R +Y++E+ + +
Sbjct: 294 SAYLEELIVRRELAMNHVFHTQGYDDYARAVPDWARKTLAEHADDPRPKLYSEEELAEGK 353
Query: 361 TAD 363
T D
Sbjct: 354 THD 356
>gi|218530705|ref|YP_002421521.1| deoxyribodipyrimidine photo-lyase [Methylobacterium extorquens CM4]
gi|218523008|gb|ACK83593.1| Deoxyribodipyrimidine photo-lyase [Methylobacterium extorquens CM4]
Length = 467
Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 123/371 (33%), Positives = 179/371 (48%), Gaps = 33/371 (8%)
Query: 10 AVQPGRIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFD 69
A+QP RIRVL + G ++Y M + RV N AL A+++AN+ +P+ V F L D
Sbjct: 2 AIQPARIRVLNDVKPREGAGYILYLMQQAMRVPFNPALELAIEEANRLKLPLLVCFGLLD 61
Query: 70 Q---FLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVT 126
F A AR F+L+GL +E+ I F L + + + A+LLV
Sbjct: 62 GANGFPEANARHYAFLLQGLADAAAALEKR-GIAFLLRRATPAEVAIDL--SADAALLVL 118
Query: 127 DFSPLREIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPE 186
D L +R +I I +V+ VVP+ S K EY+A+TLR K+ KL +
Sbjct: 119 DRGYLAIQKRWYGEIEREAQ--CRIVQVEGDVVVPLETVSTKHEYAARTLRPKLRKLWDD 176
Query: 187 YLIDYPMLEQPIEKWTGTRQSIDWDSIIAAV-LRKGAEV--PEIGWCESGEDAAMEVLKG 243
YL +P+E T + + +I + L+ G +V PE + D + +K
Sbjct: 177 YL-------EPVEPLTVDHPA---EGLIQRLKLKDGLDVSDPEKLLAKLTLDTTVGPVKR 226
Query: 244 SKDG----------FLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKA 293
+ G FL Y RN P + A S +SPYLHFG IS AL R A
Sbjct: 227 FRGGYTEAAGHLKRFLEHAFAGYGAGRNKP-EAGAASHMSPYLHFGHISPVEIALAIRAA 285
Query: 294 RKLCPEAIDTFLEELIVRRELADNFCFYQPNYDSL-KGAWEWARKSLKDHASDKREHIYT 352
+ + +LEELIVRRELA N F+ YD + +WARK+L +HA D R +Y+
Sbjct: 286 KDADDDDRSAYLEELIVRRELAMNHVFHTQGYDDYARAVPDWARKTLAEHADDPRPKLYS 345
Query: 353 KEQFEKAQTAD 363
+E+ + +T D
Sbjct: 346 EEELAEGKTHD 356
>gi|308804061|ref|XP_003079343.1| DNA deoxyribodipyrimid (ISS) [Ostreococcus tauri]
gi|116057798|emb|CAL54001.1| DNA deoxyribodipyrimid (ISS) [Ostreococcus tauri]
Length = 529
Score = 138 bits (347), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 121/364 (33%), Positives = 176/364 (48%), Gaps = 44/364 (12%)
Query: 31 VVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQ 90
V+ W+ R N AL AVD+AN + VPV F + A R +GFM GL L+
Sbjct: 49 VLLWVQASHRSTANEALETAVDRANVSGVPVIALFCSTANYPEANERHIGFMFEGLCELR 108
Query: 91 RNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICNRVSDSVT 150
+E +I F+ + I V A +V D + LR +RR ++++ R + +VT
Sbjct: 109 EALERR-KIAFYAVACSPPEAI--IVASERAVEIVVDGAYLRLLRRWREELATRATCTVT 165
Query: 151 IHEVDAHNVVP-VWVASEKLEYSAKTLRGKINKLLPEY----LIDYPMLEQPIEKWTGTR 205
EV+ VVP + + + E +A T R K+ L+ +Y P + ++ TR
Sbjct: 166 --EVETDCVVPQLSMKHARAEVAAATFRPKVLPLIGKYTRVACAVLPYIYGALDD--ATR 221
Query: 206 QSIDW--------------DSIIAAV----LRKGAEVPEIGWCESGEDAAMEVLKGSKDG 247
+S + D+ + + L + + P + G+ A L D
Sbjct: 222 KSFESTIVEFDVLPLHRGVDACLGVLDTHGLVRDPKCPRVSSHVGGQSQARAKL----DA 277
Query: 248 FLTKR-LKNYPTDRNNPLKPRALSGLSPYLHFGQISA---QRCALEARKARK----LCPE 299
FLTK+ L Y RN+P S LSP++H+GQIS R LE R A K +C
Sbjct: 278 FLTKKMLSRYHKSRNDPTLC-LQSHLSPHIHYGQISVVEIARKTLEFRDAHKEDADVCA- 335
Query: 300 AIDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKA 359
+ID FL+ELIVRRELA NF PNYD+ G WA+++L+ HA D+RE YT E+FE
Sbjct: 336 SIDVFLDELIVRRELAINFALRNPNYDTYDGLPTWAKETLEKHADDRREWTYTLEEFECG 395
Query: 360 QTAD 363
T D
Sbjct: 396 STHD 399
>gi|226228098|ref|YP_002762204.1| deoxyribodipyrimidine photolyase [Gemmatimonas aurantiaca T-27]
gi|226091289|dbj|BAH39734.1| deoxyribodipyrimidine photolyase [Gemmatimonas aurantiaca T-27]
Length = 495
Score = 137 bits (346), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 106/357 (29%), Positives = 161/357 (45%), Gaps = 36/357 (10%)
Query: 31 VVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQ 90
V+YWM R+ DNW L A+ A++ +PV V L + A AR F+L+G R
Sbjct: 37 VLYWMQSTHRLDDNWGLRAAIRTADRLKLPVVVHQGLDPTYPHASARHHTFILQGARDTA 96
Query: 91 RNIEETFQILFFLFQGEAEDNIPNFVRECGASLLV-TDFSPLREIRRCKDKICNRVSDSV 149
R E F+ + + D+ R + +V TD P +R + RV+ V
Sbjct: 97 RQAEALGIHYQFVLRPQRTDDARVVDRLAARAYVVFTDLFPTAGVRERVARFAQRVTCRV 156
Query: 150 TIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQPIEKWTGTRQSID 209
VD+ VP + EK EY+A+T+R K+ +LL + +P+E T R +
Sbjct: 157 L--AVDSVCTVPSGL-FEKAEYAARTIRPKLARLLAHAI-------EPVEDHT-PRSDVS 205
Query: 210 WD---SIIAAVLRKGAEVP-------------EIGWCESGEDAAMEVLKGSKDG------ 247
S+ A V G VP + C D + G
Sbjct: 206 TSLATSLRATVAEGGGLVPLDIAQMDDAAIARTVAGCAIDHDVCAVPMPGGSSAANARWT 265
Query: 248 -FLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLE 306
FL L Y RN S LSPYLHFGQIS+ R EA++A + +D F++
Sbjct: 266 RFLEHGLPQYDERRNEASDGEGTSRLSPYLHFGQISSARVVREAQQA-GVGAANLDAFVQ 324
Query: 307 ELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTAD 363
++ REL+ N+C P +D L W ++++++H +D R +YT++Q E+AQT D
Sbjct: 325 QITTWRELSYNWCVRTPAFDQLSALPAWVQRTMQEHVNDPRPELYTRDQLERAQTGD 381
>gi|162448261|ref|YP_001621393.1| deoxyribodipyrimidine photolyase [Acholeplasma laidlawii PG-8A]
gi|161986368|gb|ABX82017.1| deoxyribodipyrimidine photolyase [Acholeplasma laidlawii PG-8A]
Length = 458
Score = 137 bits (346), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 109/362 (30%), Positives = 183/362 (50%), Gaps = 20/362 (5%)
Query: 11 VQPGRIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQ 70
+ R++ + + +K+ ++YWM + R++ N AL +A++ ANK +P+ V FN+
Sbjct: 2 IHNDRVKKFLEHNTNKQGKFILYWMQQSMRIQYNHALNYAIELANKKKLPLIVWFNILPN 61
Query: 71 FLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSP 130
+ A R FML GL+ LQ++ + I F L G+ +NI ++ + ++ D
Sbjct: 62 YPEANLRHYTFMLEGLKELQQDFVKE-NIHFELSIGKLTENIKPYLDDVDT--IIMDRGY 118
Query: 131 LREIRRCKDKICNRVSDS--VTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYL 188
L+ R+ ++++ V D+ + I +V+ ++PV V K Y A +R K+ + LP+Y+
Sbjct: 119 LKPQRQMRNEVYKIVKDTHAIDIIQVETDLIIPVEVLYPKAAYGAYVIRPKVMEKLPQYM 178
Query: 189 IDYPMLEQ--PIEKWTGTRQSIDWDSIIAAV--LRKGAEVPEIGWCESGEDAAMEVLKGS 244
DY L + IEK T + +D +I V L V + G A + L
Sbjct: 179 -DYRELSRLDNIEK-TKVYEPLDLSNIDEVVKNLPIDMSVKPYHKFKGGRKEAYKHL--- 233
Query: 245 KDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRC--ALEARKARKLCPEAID 302
+ F + LK+Y D+ + S +S YL FGQ+S Q L K+ PE +
Sbjct: 234 -EYFFNQLLKDY--DKRSDPALHIQSYMSMYLQFGQVSDQEILRMLYDHPFYKIYPEMSE 290
Query: 303 TFLEELIVRRELADNFCFYQPNYDSLKGAWE-WARKSLKDHASDKREHIYTKEQFEKAQT 361
F+E+L+VRR LA NF Y +YD + E WA +++ +H D R HIY+ E E ++T
Sbjct: 291 GFIEQLVVRRSLAYNFVTYIKDYDVFEFMTESWAYETMYEHERDLRTHIYSLEDIEFSKT 350
Query: 362 AD 363
D
Sbjct: 351 HD 352
>gi|402466497|gb|EJW01974.1| deoxyribodipyrimidine photolyase [Edhazardia aedis USNM 41457]
Length = 460
Score = 137 bits (345), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 100/339 (29%), Positives = 172/339 (50%), Gaps = 19/339 (5%)
Query: 26 KKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRG 85
K + V+Y M RD R+ DN +LI A + + + + L + Q FM G
Sbjct: 12 KHKKNVLYIMQRDHRIYDNHSLIFAYNMSVMHKSQFYIGIELTK--IKRNKLQDTFMTEG 69
Query: 86 LRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICNRV 145
L + ++ E+ +F L +++ F + +VT+FSPLRE +++I
Sbjct: 70 LLEMHKDCEKLNYNIFIL------NSLSKFKFKFDIDCIVTEFSPLREYIEFQNEIKTFC 123
Query: 146 SDS-VTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQPIEKWTGT 204
++ V + D+HN+VP + + ++ + K ++ ++NK +Y+ + +E + T
Sbjct: 124 EENQVAFYICDSHNIVPAKILDKYVK-TPKAVKIRLNKESKKYVNE---IENVGKHLYNT 179
Query: 205 RQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPL 264
I DS L + + + G M + FL ++LKNY +RN+P+
Sbjct: 180 SMEI-CDSYTPFNLMQKPQYKNYTKFKGGYRHGMNEF----NFFLREKLKNYKINRNDPM 234
Query: 265 KPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVRRELADNFCFYQPN 324
K +S LSP+LHFGQIS R LE+ K + E ++ ++ E+ RE+A++FC +
Sbjct: 235 KDN-ISNLSPWLHFGQISPLRLMLESLKKFEHSNENLECWISEMFFWREIAEHFCMHTKE 293
Query: 325 YDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTAD 363
YDS+KGA WA+++L H DKR+ IY+ + E A+T D
Sbjct: 294 YDSIKGALPWAQETLNLHKVDKRDIIYSLDALENAKTHD 332
>gi|145346558|ref|XP_001417753.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144577981|gb|ABO96046.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 467
Score = 137 bits (345), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 127/381 (33%), Positives = 182/381 (47%), Gaps = 34/381 (8%)
Query: 3 SLTPPSTAVQPGRIRVLKQGSLDKKRGP----VVYWMFRDQRVRDNWALIHAVDQANKNN 58
S T + +V R+R L + P V+ W QR R N AL +AVD+AN
Sbjct: 11 SATLRARSVHEARVRRLNDAR--AREAPDGAYVLLWAQSAQRTRWNEALEYAVDRANDRR 68
Query: 59 VPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQ-GEAEDNIPNFVR 117
P+ V F + A R +GFML GL ++ + + +I F F E + R
Sbjct: 69 APLVVVFCSTATYPEANERHVGFMLEGLCEMRATLGKR-RIAFEAFACAPPEAALAASER 127
Query: 118 ECGASLLVTDFSPLREIRRCKDKICNRVSDSVTIHEVDAHNVVP-VWVASEKLEYSAKTL 176
A +VTD LR +R +D + R + +VT E++ VVP + + + E SA T
Sbjct: 128 ---AIEVVTDSGYLRLLRAWRDDLARRATCAVT--EIETECVVPQLGQGARRAEPSAATF 182
Query: 177 RGKINKLLPEYLIDYPMLEQPIEKWTGTRQSIDWDSII----AAVLRKGAEVPEIGWCES 232
R K+ + E+ + + ++K+ D+ + A L++ P +
Sbjct: 183 RPKVLARVREFTRN--ACAKTVDKYERLPLERGVDACLNVLDAYGLKRDPSCPRVSSHVG 240
Query: 233 GEDAAMEVLKGSKDGFLTKR-LKNYPTDRNNPLKPRALSGLSPYLHFGQISA---QRCAL 288
GE A K D FLTK L Y RN+P S LSP++H+GQIS R AL
Sbjct: 241 GESRA----KAKLDVFLTKNMLSRYHHSRNDPCLC-LQSHLSPHIHYGQISVVEVARKAL 295
Query: 289 EARKARK----LCPEAIDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHAS 344
R A +C ++D FL+ELIVRRELA NF P YDS G EWAR++L+ H
Sbjct: 296 AFRDAHADEADICA-SVDVFLDELIVRRELAVNFALRNPKYDSYDGLPEWARETLERHRG 354
Query: 345 DKREHIYTKEQFEKAQTADPV 365
D+RE YT E+FE +T D +
Sbjct: 355 DRREWTYTLEEFEHGRTHDKL 375
>gi|393769050|ref|ZP_10357579.1| deoxyribodipyrimidine photo-lyase [Methylobacterium sp. GXF4]
gi|392725510|gb|EIZ82846.1| deoxyribodipyrimidine photo-lyase [Methylobacterium sp. GXF4]
Length = 462
Score = 137 bits (345), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 120/371 (32%), Positives = 172/371 (46%), Gaps = 37/371 (9%)
Query: 10 AVQPGRIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFD 69
A+Q RIRVL V+Y + + R R N AL A+++AN+ ++PV F L D
Sbjct: 2 AIQGERIRVLNDVEPRADGRYVLYLLQQANRARFNPALEFAIEEANRLDLPVIACFGLLD 61
Query: 70 QFLG---AKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVT 126
G A AR F+L+GL + +E+ + + F+ + A I + E A+LLV
Sbjct: 62 GASGFPEANARHYAFLLQGLADAKAGLEK--RGVGFVMRKCAPAKIAIDLAEE-AALLVL 118
Query: 127 DFSPLREIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPE 186
D L + +I V + +V+ VVPV AS K E++A+TLR K+N+L
Sbjct: 119 DRGYLAIQKGWYREIAKAVKTRIV--QVEGDVVVPVETASNKHEFAARTLRPKLNRLWDP 176
Query: 187 YLIDY-------------PMLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESG 233
++ D P E + + D ++ V R G
Sbjct: 177 FIADLKPRKPKHAATDVTPEGEIDVSDPEAVLAGMSLDRVVGPVKR----------FTGG 226
Query: 234 EDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKA 293
E A + LK FL Y RN P + A S +SP+LHFGQIS AL R+A
Sbjct: 227 ETEARKRLKA----FLADGFAGYGAGRNMP-EAAAASHMSPFLHFGQISPVEIALAVREA 281
Query: 294 RKLCPEAIDTFLEELIVRRELADNFCFYQPNYDSL-KGAWEWARKSLKDHASDKREHIYT 352
+ + +LEELIVRRELA N FY YD K +WARK+L + A D R +Y+
Sbjct: 282 KVGDDDDRGAYLEELIVRRELAMNHVFYTEGYDDYDKAVPDWARKTLAEQAEDARPTLYS 341
Query: 353 KEQFEKAQTAD 363
+ Q +T D
Sbjct: 342 EAQLAAGETHD 352
>gi|163851953|ref|YP_001639996.1| deoxyribodipyrimidine photo-lyase [Methylobacterium extorquens PA1]
gi|163663558|gb|ABY30925.1| Deoxyribodipyrimidine photo-lyase [Methylobacterium extorquens PA1]
Length = 467
Score = 137 bits (345), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 125/372 (33%), Positives = 177/372 (47%), Gaps = 35/372 (9%)
Query: 10 AVQPGRIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFD 69
A+QP RIRVL + G V+Y M + RV N AL A+++AN+ +P+ V F L D
Sbjct: 2 AIQPARIRVLNDVKPREGAGYVLYLMQQAMRVPFNPALELAIEEANRLKLPLLVCFGLLD 61
Query: 70 Q---FLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVT 126
F A AR F+L+GL +E+ I F L + + + A+LLV
Sbjct: 62 GANGFPEANARHYAFLLQGLADAAAALEKR-GIAFLLRRATPAEVAIDL--SADAALLVL 118
Query: 127 DFSPLREIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPE 186
D L +R +I I +V+ VVP+ S K EY+A+TLR K+ KL +
Sbjct: 119 DRGYLAIQKRWYGEIEREAQ--CRIVQVEGDVVVPLETTSTKHEYAARTLRPKLRKLWDD 176
Query: 187 YL--IDYPMLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEV--PEIGWCESGEDAAMEVLK 242
YL ++ ++ P E G Q + LR G +V PE D + +K
Sbjct: 177 YLDPVEPRTVDHPAE---GLIQRLK--------LRDGLDVSDPEKLLATLTLDTTVGPVK 225
Query: 243 GSKDG----------FLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARK 292
+ G FL Y RN P + A S +SPYLHFG IS AL R
Sbjct: 226 RFRGGYTEAAGHLKRFLEHAFAGYGAGRNKP-EAGAASHMSPYLHFGHISPVEIALAIRA 284
Query: 293 ARKLCPEAIDTFLEELIVRRELADNFCFYQPNYDSL-KGAWEWARKSLKDHASDKREHIY 351
A+ + +LEELIVRRELA N F+ YD + +WARK+L +HA D R +Y
Sbjct: 285 AKDADDDDRSAYLEELIVRRELAMNHVFHTQGYDDYARAVPDWARKTLAEHADDPRPKLY 344
Query: 352 TKEQFEKAQTAD 363
++E+ + +T D
Sbjct: 345 SEEELAEGKTHD 356
>gi|339500100|ref|YP_004698135.1| DNA photolyase FAD-binding protein [Spirochaeta caldaria DSM 7334]
gi|338834449|gb|AEJ19627.1| DNA photolyase FAD-binding protein [Spirochaeta caldaria DSM 7334]
Length = 463
Score = 137 bits (344), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 114/352 (32%), Positives = 168/352 (47%), Gaps = 31/352 (8%)
Query: 31 VVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQ 90
++YWM R R N AL +AV+ AN+ +P+ F + D +L A ++ GL Q
Sbjct: 20 ILYWMQASIRGRSNLALDYAVEAANRRGLPLITVFCIQDNYLSASQIHYKYLFAGLTEAQ 79
Query: 91 RNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICNRVSDSVT 150
+N+ E I +L++G+ +P + A+L+V D LR R + + +R+
Sbjct: 80 QNLTEK-GIALYLYKGDPIQILPLLAQH--AALVVLDTGYLRHQRIWRTNLGSRLPCRTI 136
Query: 151 IHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQPIEKWTGTRQSIDW 210
V+++ ++PV AS K E+SA TLR KI LL ++L D E P S++
Sbjct: 137 W--VESNIIIPVETASIKEEWSAFTLRRKIIPLLDDFL-DRATDEIP------RYSSLNT 187
Query: 211 DSIIAAVLRKGAEVPEI-----GWC-ESGEDAAMEVLKGSK------DGFLTKRLKNYPT 258
D + +P + G C + + + + G + FLT R+ Y +
Sbjct: 188 DFLPHVPDHFSLNLPNLLKYPPGTCPKRMAEQTITDIPGHQIALQRFSDFLTARIDTYES 247
Query: 259 DRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKL-----CPE-AIDTFLEELIVRR 312
DRNNPL S +S LHFG IS AL ++ L C +LEELIVRR
Sbjct: 248 DRNNPLL-NGTSRMSGALHFGFISPLEMALTLQQELGLHRISACNHPGAAAYLEELIVRR 306
Query: 313 ELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADP 364
ELA NFC+Y YD+ G WA ++L + R IY E E AQT DP
Sbjct: 307 ELAINFCYYNNAYDTPAGLPSWAIQTLTEGNLHPRRQIYNLESLEMAQTDDP 358
>gi|325180777|emb|CCA15187.1| deoxyribodipyrimidine photolyase putative [Albugo laibachii Nc14]
Length = 779
Score = 136 bits (343), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 123/416 (29%), Positives = 191/416 (45%), Gaps = 66/416 (15%)
Query: 9 TAVQPGRIRVLKQG----SLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVA 64
+ Q RIR L G + +K ++YWM R + N++L +A+ A ++P+ V
Sbjct: 276 SGFQNERIRWLYDGISHARIQQKPSYLLYWMQTSVRTKYNYSLEYAIAAAAALHIPLQVV 335
Query: 65 FNLFDQ--------------FLGAKARQLGFMLRGLRLLQRNIEE---TFQILFF----- 102
+ DQ F + R F L GL ++ + E +F++L+
Sbjct: 336 YFFSDQSTVPASQLPKDPNAFAFSTERHAKFALEGLACTEKRLRERGLSFKVLYHTPEKD 395
Query: 103 --LFQGEAEDNI-PNFVRECG--ASLLVTDFSPLREIRRCKDKICNRVSDSVT---IHEV 154
L G++ + +C A L+VTD LR K S++ + ++
Sbjct: 396 PPLVDGDSSSFCRKQLLSKCAQHALLVVTDRPYLRPAALDTLKCATNASETQLPWGMVQI 455
Query: 155 DAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYL--------------IDYPMLEQPIEK 200
+ VVP S+K EY+A+T+R KI +LLP ++ +D + + P
Sbjct: 456 EGDVVVPCETTSKKEEYAARTIRPKITQLLPSFIKELEHVSVPDFVQSVDRNLFQFPTRY 515
Query: 201 WTGTRQSIDWDSIIA-----------AVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFL 249
+ + D + I A+L+ VP + GED A + K FL
Sbjct: 516 FLVKSPASDTNEDILEFNLSQLKDILALLKVDRNVPGLSNFRGGEDEASLLTKV----FL 571
Query: 250 TKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAI-DTFLEEL 308
K+L NY RN P S +S YLHFG IS R AL K + +A D FLEE+
Sbjct: 572 EKKLSNYALGRNEP-SNDGTSNISLYLHFGHISPVRIALATHKIKAASSKASRDAFLEEM 630
Query: 309 IVRRELADNFCFYQPN-YDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTAD 363
IVRREL+ N + P+ YDS++ +A+K+L+DHA+DKR +YT E+ E A+T D
Sbjct: 631 IVRRELSVNMVVFNPHTYDSMECIPNFAKKTLEDHANDKRPFLYTLEELEAAKTYD 686
>gi|94971523|ref|YP_593571.1| deoxyribodipyrimidine photo-lyase type II [Candidatus Koribacter
versatilis Ellin345]
gi|94553573|gb|ABF43497.1| Deoxyribodipyrimidine photo-lyase type II [Candidatus Koribacter
versatilis Ellin345]
Length = 446
Score = 136 bits (343), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 110/344 (31%), Positives = 164/344 (47%), Gaps = 32/344 (9%)
Query: 32 VYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQR 91
+YWM R QR DN AL AV AN +P + F + A R F+ +G+ +
Sbjct: 1 MYWMQRAQRAFDNPALDVAVQAANALKLPCVIFFAPVPFYPHANLRHYAFLQQGIPDIAE 60
Query: 92 NIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICNRVSDSVTI 151
EE + + F+ + E ++ F E A+L++ D +P+RE+R ++ ++ V +
Sbjct: 61 MAEE--RDIGFVLRRFPEHSLIKFCDEVKAALVIGDENPMRELREWREIAAKKLR--VPL 116
Query: 152 HEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQPIE--KWTGTR--QS 207
VDA +VP + K +Y+A+ +R ++ E L+ E P KW R Q
Sbjct: 117 WTVDADVIVPSKLLG-KEQYAARIIRPRLKAHFKELLVP---CENPRAHVKWHAARGLQQ 172
Query: 208 IDWDSIIAAVLRKGAEVPEIGW--------CESGEDAAMEVLKGSKDGFLTKRLKNYPTD 259
+DW +G E GW +S E L+ D F+ L YP +
Sbjct: 173 LDW---------RGTEDITEGWEIDRSVKPVDSFHGGTREALR-LLDEFVKHGLTRYP-E 221
Query: 260 RNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVRRELADNFC 319
R+N + LSPYLHFG I AL K+ K+ EA D FL+++I RELA N
Sbjct: 222 RHNQADENGTARLSPYLHFGHIGPHTVALAVEKS-KVPREAKDDFLDQVITWRELAINMV 280
Query: 320 FYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTAD 363
+ P YD+L+ WA K+L +HA D R YT +Q E A+T D
Sbjct: 281 HFNPLYDTLECGENWAHKTLGEHAKDPRPIQYTPKQLEAAETYD 324
>gi|325180775|emb|CCA15185.1| deoxyribodipyrimidine photolyase putative [Albugo laibachii Nc14]
Length = 716
Score = 136 bits (343), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 123/416 (29%), Positives = 193/416 (46%), Gaps = 66/416 (15%)
Query: 9 TAVQPGRIRVLKQG----SLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVA 64
+ Q RIR L G + +K ++YWM R + N++L +A+ A ++P+ V
Sbjct: 213 SGFQNERIRWLYDGISHARIQQKPSYLLYWMQTSVRTKYNYSLEYAIAAAAALHIPLQVV 272
Query: 65 FNLFDQ--------------FLGAKARQLGFMLRGLRLLQRNIEE---TFQILFFLFQGE 107
+ DQ F + R F L GL ++ + E +F++L+ + +
Sbjct: 273 YFFSDQSTVPASQLPKDPNAFAFSTERHAKFALEGLACTEKRLRERGLSFKVLYHTPEKD 332
Query: 108 ---AEDNIPNFVRE-----CG--ASLLVTDFSPLREIRRCKDKICNRVSDSVT---IHEV 154
+ + +F R+ C A L+VTD LR K S++ + ++
Sbjct: 333 PPLVDGDSSSFCRKQLLSKCAQHALLVVTDRPYLRPAALDTLKCATNASETQLPWGMVQI 392
Query: 155 DAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYL--------------IDYPMLEQPIEK 200
+ VVP S+K EY+A+T+R KI +LLP ++ +D + + P
Sbjct: 393 EGDVVVPCETTSKKEEYAARTIRPKITQLLPSFIKELEHVSVPDFVQSVDRNLFQFPTRY 452
Query: 201 WTGTRQSIDWDSIIA-----------AVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFL 249
+ + D + I A+L+ VP + GED A + K FL
Sbjct: 453 FLVKSPASDTNEDILEFNLSQLKDILALLKVDRNVPGLSNFRGGEDEASLLTKV----FL 508
Query: 250 TKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAI-DTFLEEL 308
K+L NY RN P S +S YLHFG IS R AL K + +A D FLEE+
Sbjct: 509 EKKLSNYALGRNEP-SNDGTSNISLYLHFGHISPVRIALATHKIKAASSKASRDAFLEEM 567
Query: 309 IVRRELADNFCFYQPN-YDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTAD 363
IVRREL+ N + P+ YDS++ +A+K+L+DHA+DKR +YT E+ E A+T D
Sbjct: 568 IVRRELSVNMVVFNPHTYDSMECIPNFAKKTLEDHANDKRPFLYTLEELEAAKTYD 623
>gi|325180778|emb|CCA15188.1| deoxyribodipyrimidine photolyase putative [Albugo laibachii Nc14]
Length = 758
Score = 136 bits (343), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 123/416 (29%), Positives = 191/416 (45%), Gaps = 66/416 (15%)
Query: 9 TAVQPGRIRVLKQG----SLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVA 64
+ Q RIR L G + +K ++YWM R + N++L +A+ A ++P+ V
Sbjct: 255 SGFQNERIRWLYDGISHARIQQKPSYLLYWMQTSVRTKYNYSLEYAIAAAAALHIPLQVV 314
Query: 65 FNLFDQ--------------FLGAKARQLGFMLRGLRLLQRNIEE---TFQILFF----- 102
+ DQ F + R F L GL ++ + E +F++L+
Sbjct: 315 YFFSDQSTVPASQLPKDPNAFAFSTERHAKFALEGLACTEKRLRERGLSFKVLYHTPEKD 374
Query: 103 --LFQGEAEDNI-PNFVRECG--ASLLVTDFSPLREIRRCKDKICNRVSDSVT---IHEV 154
L G++ + +C A L+VTD LR K S++ + ++
Sbjct: 375 PPLVDGDSSSFCRKQLLSKCAQHALLVVTDRPYLRPAALDTLKCATNASETQLPWGMVQI 434
Query: 155 DAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYL--------------IDYPMLEQPIEK 200
+ VVP S+K EY+A+T+R KI +LLP ++ +D + + P
Sbjct: 435 EGDVVVPCETTSKKEEYAARTIRPKITQLLPSFIKELEHVSVPDFVQSVDRNLFQFPTRY 494
Query: 201 WTGTRQSIDWDSIIA-----------AVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFL 249
+ + D + I A+L+ VP + GED A + K FL
Sbjct: 495 FLVKSPASDTNEDILEFNLSQLKDILALLKVDRNVPGLSNFRGGEDEASLLTKV----FL 550
Query: 250 TKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAI-DTFLEEL 308
K+L NY RN P S +S YLHFG IS R AL K + +A D FLEE+
Sbjct: 551 EKKLSNYALGRNEP-SNDGTSNISLYLHFGHISPVRIALATHKIKAASSKASRDAFLEEM 609
Query: 309 IVRRELADNFCFYQPN-YDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTAD 363
IVRREL+ N + P+ YDS++ +A+K+L+DHA+DKR +YT E+ E A+T D
Sbjct: 610 IVRRELSVNMVVFNPHTYDSMECIPNFAKKTLEDHANDKRPFLYTLEELEAAKTYD 665
>gi|325180776|emb|CCA15186.1| deoxyribodipyrimidine photolyase putative [Albugo laibachii Nc14]
Length = 737
Score = 136 bits (343), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 123/416 (29%), Positives = 193/416 (46%), Gaps = 66/416 (15%)
Query: 9 TAVQPGRIRVLKQG----SLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVA 64
+ Q RIR L G + +K ++YWM R + N++L +A+ A ++P+ V
Sbjct: 234 SGFQNERIRWLYDGISHARIQQKPSYLLYWMQTSVRTKYNYSLEYAIAAAAALHIPLQVV 293
Query: 65 FNLFDQ--------------FLGAKARQLGFMLRGLRLLQRNIEE---TFQILFFLFQGE 107
+ DQ F + R F L GL ++ + E +F++L+ + +
Sbjct: 294 YFFSDQSTVPASQLPKDPNAFAFSTERHAKFALEGLACTEKRLRERGLSFKVLYHTPEKD 353
Query: 108 ---AEDNIPNFVRE-----CG--ASLLVTDFSPLREIRRCKDKICNRVSDSVT---IHEV 154
+ + +F R+ C A L+VTD LR K S++ + ++
Sbjct: 354 PPLVDGDSSSFCRKQLLSKCAQHALLVVTDRPYLRPAALDTLKCATNASETQLPWGMVQI 413
Query: 155 DAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYL--------------IDYPMLEQPIEK 200
+ VVP S+K EY+A+T+R KI +LLP ++ +D + + P
Sbjct: 414 EGDVVVPCETTSKKEEYAARTIRPKITQLLPSFIKELEHVSVPDFVQSVDRNLFQFPTRY 473
Query: 201 WTGTRQSIDWDSIIA-----------AVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFL 249
+ + D + I A+L+ VP + GED A + K FL
Sbjct: 474 FLVKSPASDTNEDILEFNLSQLKDILALLKVDRNVPGLSNFRGGEDEASLLTKV----FL 529
Query: 250 TKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAI-DTFLEEL 308
K+L NY RN P S +S YLHFG IS R AL K + +A D FLEE+
Sbjct: 530 EKKLSNYALGRNEP-SNDGTSNISLYLHFGHISPVRIALATHKIKAASSKASRDAFLEEM 588
Query: 309 IVRRELADNFCFYQPN-YDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTAD 363
IVRREL+ N + P+ YDS++ +A+K+L+DHA+DKR +YT E+ E A+T D
Sbjct: 589 IVRRELSVNMVVFNPHTYDSMECIPNFAKKTLEDHANDKRPFLYTLEELEAAKTYD 644
>gi|324506249|gb|ADY42672.1| Deoxyribodipyrimidine photo-lyase [Ascaris suum]
Length = 549
Score = 134 bits (338), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 109/345 (31%), Positives = 182/345 (52%), Gaps = 18/345 (5%)
Query: 28 RGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLR 87
+G V ++ R R + + A A ++ANK+ VP+ +A +L+ Q F+L GL+
Sbjct: 16 KGSYVLYILRCLRTKYSAAFSFASERANKSQVPL-IALHLYVP-EHHNVPQRVFLLEGLK 73
Query: 88 LLQRNIEETFQILFFLFQGEAEDNIPNFVREC-GASLLVTDFSPLREIRRCKDKICNRVS 146
L+ ++ L + + +D + ++ C GA +V D + LR R ++++ + +
Sbjct: 74 ELKESMGSLQVKLLCVKANDNKDALKIALQLCEGACEVVLDAAYLRGDREFEEQLNHMLI 133
Query: 147 DSV-TIHEVDAHNVVPVWVASEKLEYSAKTLRGKI----NKLLPEYLIDYPMLEQPIEKW 201
+ + ++ + VP+ ++S+ E+ A+TLR KI +L E D PM+ P W
Sbjct: 134 ERCRKLTRIEGNVSVPINLSSKSAEWGARTLRPKIWQHLKAMLAEKWEDVPMI--PCGNW 191
Query: 202 TG-TRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLKNYPTDR 260
+ +I ++ + R ++ GE A +L F++ +L +Y R
Sbjct: 192 AKLIKGNIPEMNLEEELKRAQSDCKSDSGFVGGETVAQRML----SFFISNKLVSYHPGR 247
Query: 261 NNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVRRELADNFCF 320
N P + S LSPYLHFG ISA + A K AID+F+EEL+VRR+L+ NF +
Sbjct: 248 NIP-GSKYQSLLSPYLHFGMISAIEIIKRVKDA-KAPKHAIDSFIEELLVRRDLSHNFVY 305
Query: 321 Y-QPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADP 364
Y + NYDSL +WA+K+LK H +DKR++IYT E+ E A+T DP
Sbjct: 306 YAKDNYDSLDCLPDWAQKTLKQHKNDKRDYIYTSEELEDARTHDP 350
>gi|188581711|ref|YP_001925156.1| deoxyribodipyrimidine photo-lyase [Methylobacterium populi BJ001]
gi|179345209|gb|ACB80621.1| Deoxyribodipyrimidine photo-lyase [Methylobacterium populi BJ001]
Length = 467
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 126/367 (34%), Positives = 174/367 (47%), Gaps = 25/367 (6%)
Query: 10 AVQPGRIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFD 69
A+QP RIRVL + V+Y M + RV N AL A+++AN+ +P+ V F L D
Sbjct: 2 AIQPARIRVLNDEPPREDADIVLYLMQQAMRVPFNPALELAIEEANRLKLPLLVCFGLLD 61
Query: 70 Q---FLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVT 126
F A R F+L+GL ++ I F + +G + + A+LLV
Sbjct: 62 GANGFPEANERHYAFLLQGLADAAAALDRR-GIAFLVRRGTPAQVAIDLSEK--AALLVL 118
Query: 127 DFSPLREIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPE 186
D L + I + +V+ VVPV AS K EY+A+TLR K+ KL +
Sbjct: 119 DRGYLAIQKNWYGAIEREAK--CRVVQVEGDVVVPVETASAKHEYAARTLRPKLQKLWDD 176
Query: 187 YL-------IDYPMLEQPIE--KWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAA 237
YL +D+P E IE K D D+++A L+ V + G A
Sbjct: 177 YLEPLEPRAVDHPA-EGLIERLKLKDGLDVSDPDTLLAK-LKLDTTVGPVKRFRGGHTEA 234
Query: 238 MEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLC 297
E L D FL Y RN P + A S +SPYLHFG IS AL R A
Sbjct: 235 AERL----DSFLKDAFAGYGAGRNKP-EAGAASHMSPYLHFGHISPVETALAIRAAEGAD 289
Query: 298 PEAIDTFLEELIVRRELADNFCFYQPNYDSL-KGAWEWARKSLKDHASDKREHIYTKEQF 356
+ +LEELIVRRELA N F+ YD + EWARK+L +HA D R +Y++E+
Sbjct: 290 RDDRSAYLEELIVRRELAMNHVFHTEGYDDYARAVPEWARKTLAEHADDARPKLYSEEEL 349
Query: 357 EKAQTAD 363
+ +T D
Sbjct: 350 AEGKTHD 356
>gi|391332116|ref|XP_003740484.1| PREDICTED: deoxyribodipyrimidine photo-lyase-like [Metaseiulus
occidentalis]
Length = 447
Score = 130 bits (328), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 102/338 (30%), Positives = 168/338 (49%), Gaps = 32/338 (9%)
Query: 31 VVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQF--LGAKARQLGFMLRGLRL 88
++Y M RD+R+ DN H V+ K + F +F L RQ F++ GL+
Sbjct: 20 ILYLMRRDKRIFDN----HCVELGFKLSYKSKTKFYTGVEFSKLKINERQKTFVIEGLQE 75
Query: 89 LQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICNRVSD- 147
++ E I F L DN+ FV + ++ DFSPLRE ++++ SD
Sbjct: 76 MEEACRE-HNIYFDLI-----DNLEKFVEKRDIDCIIMDFSPLRECEAYRNEVEEMCSDK 129
Query: 148 SVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQPI--EKWTGTR 205
++++ VDAHN+VP + + + ++K ++ ++ +YL D+ LE+ + +K +
Sbjct: 130 ELSLYVVDAHNMVPCKLL-DVYKRTSKAVKIQLFNHWDDYLSDFKPLEKHLYNKKSETST 188
Query: 206 QSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLK 265
QS D+ + KG G M+ + + F K+ Y +RNNP
Sbjct: 189 QSNDFPKKSVKNIFKG-----------GYSHGMDTV----EHFFDKKFAIYAKNRNNP-D 232
Query: 266 PRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVRRELADNFCFYQPNY 325
ALS LSP++ GQIS+Q+ A K E +F+ E+ +E +++FC ++ NY
Sbjct: 233 VDALSNLSPWISSGQISSQKVIYLATKRFGKKNENYISFINEIFAVKENSEHFCLHEKNY 292
Query: 326 DSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTAD 363
D++ GA +WA+ SL H +DKRE IY E E +T D
Sbjct: 293 DNIDGALQWAKDSLNLHRNDKRERIYDLETLEMGKTKD 330
>gi|317416914|emb|CBI63255.1| deoxyribodipyrimidine photolyase 1 [Hyaloperonospora arabidopsidis]
Length = 596
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 128/414 (30%), Positives = 181/414 (43%), Gaps = 86/414 (20%)
Query: 29 GPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFL---------------G 73
G ++YWM R + N+AL +AV ANK +P+ V + D+ +
Sbjct: 36 GYLLYWMQTSVRTKHNYALEYAVAAANKLQLPLHVVYLFPDRSVLPPLPKSEDDHDDEWK 95
Query: 74 AKARQLG------------FMLRGL-----RLLQRNIEETFQILFFLFQGEAEDNIPN-- 114
A+ARQ F L GL RL R + +F + Q + +
Sbjct: 96 AEARQDASAHAFVTERHARFALEGLADAYERLASRGV--SFDVFHHTHQKQQQGKTKGDG 153
Query: 115 -----FVRECG--ASLLVTDFSPLREIRRCKDKICNRVSD----------------SVTI 151
+ C A+L+VTD LR R D + + D I
Sbjct: 154 LARNELLEVCARRAALVVTDRPYLRPWRSALDTLVASIEDREGGDDGDETGHSSAAEFGI 213
Query: 152 HEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYP--MLEQPIEKWTGTRQS-- 207
+V+ VVP V + K EY+A+T+R KI K L +++ LEQ + S
Sbjct: 214 VQVEGEVVVPADVVTNKEEYAARTIRPKITKHLDRFVVSLESLTLEQSCRTDGKSLLSGL 273
Query: 208 --------IDWDSIIAA-----VLRKGAEVPEIGWC-ESGEDAAMEVLKGSKDGFLT-KR 252
+D S A +L V +GWC GE AA K FLT +
Sbjct: 274 DKHEQLKLLDVTSSKAVADTLELLDVDRNVKSVGWCFRGGETAASACAKR----FLTPDK 329
Query: 253 LKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKL--CPEAIDTFLEELIV 310
L NY T RN P A S LS YL +G I A R AL A K + + E + +FLEELIV
Sbjct: 330 LANYATQRNEP-SLDASSDLSVYLRYGHICAVRIALAANKLKGVTRAKEGLASFLEELIV 388
Query: 311 RRELADNFCFY-QPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTAD 363
RREL+ N Y Q NYDS + +A+ +L++HA DKR+ +Y++++ E QT D
Sbjct: 389 RRELSVNLVVYNQDNYDSFRCLPNYAQTTLQEHADDKRDQLYSRDKLESFQTGD 442
>gi|301090094|ref|XP_002895279.1| deoxyribodipyrimidine photolyase, putative [Phytophthora infestans
T30-4]
gi|262100969|gb|EEY59021.1| deoxyribodipyrimidine photolyase, putative [Phytophthora infestans
T30-4]
Length = 582
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 132/420 (31%), Positives = 189/420 (45%), Gaps = 87/420 (20%)
Query: 15 RIRVLKQGSLDK-KRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLG 73
RI+ L +G+ + G ++YWM R + N+AL +AV AN+ +P+ V + D+ +
Sbjct: 21 RIQWLYEGTTSQPDDGYLLYWMQTSVRTKHNYALEYAVAAANELKLPLHVVYLFPDRSVT 80
Query: 74 ------------------------AKARQLGFMLRGLR-LLQRNIEETFQILFFLFQGEA 108
A R F L GL QR + F Q +
Sbjct: 81 PKLQSFQDDEWKAEAIQDANAHAFATERHALFALEGLTDAYQRLASRGLNLDVFHHQHK- 139
Query: 109 EDNIPN---FVRECG--ASLLVTDFSPLREIRRCKDKICNRVSD--------SVTIHEVD 155
E+ P + C A+L+VTD LR R DK+ + V D S I +++
Sbjct: 140 ENERPTRDELLEFCARKAALVVTDCPYLRPWRVALDKLVSSVEDKGDAGASSSFGIVQIE 199
Query: 156 AHNVVPVWVASEKLEYSAKTLRGKINKLLPEYL--IDYPMLE------------------ 195
VVP V ++K EY+A+T+R KI K L Y+ ++Y L+
Sbjct: 200 GDVVVPAAVVTDKEEYAARTIRPKITKHLDRYIAPLEYMTLDPAYYTEGKSLLAVLNEPE 259
Query: 196 --QPI-----EKWTGTRQSIDWDSIIAAVLRKGAEVPEIGW-CESGEDAAMEVLKGSKDG 247
+P+ E T + +D D + AV GW + GE AA K
Sbjct: 260 QLKPLDVTDSEAVASTLELLDVDRSVKAV----------GWHFKGGEKAASACAKK---- 305
Query: 248 FLTK-RLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKAR--KLCPEAIDTF 304
FLT L +Y T RN P A S LS YL +G I R L A K + K E + +F
Sbjct: 306 FLTADNLVSYATKRNEP-SLDAGSDLSLYLRYGHICVVRVVLAAHKLKGVKRAKEGLASF 364
Query: 305 LEELIVRRELADNFCFY-QPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTAD 363
LEELIVRREL+ N Y Q NYDS+ +A+ +L++HA DKR+ +Y++EQ E QT D
Sbjct: 365 LEELIVRRELSVNLVVYNQDNYDSMCCLPSYAQITLQEHADDKRDQLYSREQLENYQTGD 424
>gi|391335982|ref|XP_003742363.1| PREDICTED: deoxyribodipyrimidine photo-lyase-like [Metaseiulus
occidentalis]
Length = 453
Score = 127 bits (319), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 102/344 (29%), Positives = 172/344 (50%), Gaps = 40/344 (11%)
Query: 28 RGPVVYWMFRDQRVRDNWA--LIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRG 85
+ V+Y M RD+RV DN L + + A+K + + F + L +RQ F+L G
Sbjct: 14 KSNVLYLMRRDKRVYDNHCVELGYKLSYASKGRFYIGIEF----EKLKLNSRQKTFVLEG 69
Query: 86 LRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKI---C 142
L EE + L F + + FV++ ++ DFSPLRE + ++ C
Sbjct: 70 LE----EDEEACRRLNIYFSLIVD--LDRFVKQKNIDCIILDFSPLRECLAYRGEVEAYC 123
Query: 143 NRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQPIEKWT 202
+ +++ DA+N+VP + + + ++K +R ++ + P++L DY +LE+ +
Sbjct: 124 --IEKRISLRVCDANNLVPCKILA-VYKKTSKAVRSELFEHFPKFLRDYKVLEKHL---- 176
Query: 203 GTRQSIDWDSIIAAVLRKGAEVPEIGWCES----GEDAAMEVLKGSKDGFLTKRLKNYPT 258
++ ++K +E PE+ ++ G M++L + FL KR Y
Sbjct: 177 -------YNKSSETYMQK-SEFPEVPVVQNVFKGGYSQGMKML----EEFLQKRFPTYHK 224
Query: 259 DRNNPLKPRALSGLSPYLHFGQISAQRCA-LEARKARKLCPEAIDTFLEELIVRRELADN 317
R NP LS LSP++ GQIS Q+ + A++ ++ + FL E+ RE A++
Sbjct: 225 HRKNP-DADNLSNLSPWISNGQISTQKILFIIAQRFKEKKSDNYHAFLREVFAFRETAEH 283
Query: 318 FCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQT 361
FC ++ NYDSL+GA WA+ +L H D RE IY E+ EK QT
Sbjct: 284 FCLHERNYDSLEGALPWAKDTLTKHKDDDREQIYDLEKLEKGQT 327
>gi|325187408|emb|CCA21946.1| deoxyribodipyrimidine photolyase putative [Albugo laibachii Nc14]
Length = 532
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 123/418 (29%), Positives = 187/418 (44%), Gaps = 70/418 (16%)
Query: 8 STAVQPGRIRVLKQGS--LDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAF 65
S +QP RI L G D ++YWM R N++L +A++ A ++P+ V +
Sbjct: 14 SGRIQPERISWLYDGGNCEDTSAKYLLYWMQTSVRTTHNYSLEYAIEAATALSLPLQVIY 73
Query: 66 NLFDQ--------------FLGAKARQLGFMLRGL-----RLLQRNIEETFQILFF---L 103
D+ F + R F L GL RL +R I+ F+I+ +
Sbjct: 74 FFSDRSSVPEEQLSRDPNAFAFSTERHAKFALEGLASTKMRLKERGID--FKIILYRKPT 131
Query: 104 FQGEAEDNIP-------NFVRECG--ASLLVTDFSPLR----EIRRCKDKICNRVSDSVT 150
+ E E+N + + +C A L+VTD +R + RC + R
Sbjct: 132 HESENEENEDQSDATRYHLLEKCARDALLVVTDKPYIRFSANDTMRCAEYALER-QKLWG 190
Query: 151 IHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLE--------------- 195
+ +V+ VVP + S+K EYSA+T+R K+ + L ++L++ +
Sbjct: 191 LVQVEGDVVVPSAITSDKEEYSARTIRPKVTRQLTKFLVELKKQDISEKIKSSDSKLLCF 250
Query: 196 QPIEKWTGTRQSIDW--------DSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDG 247
P+E +T + S D S + L V + GED E + ++D
Sbjct: 251 LPLELFTKEKNSADCVLEIDPTRKSEVLDALDLDRSVVSVDSIIGGED---EAERHTQD- 306
Query: 248 FLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKA-RKLCPEAIDTFLE 306
F +L Y RN P S LS YLH+G IS AL + + + D FLE
Sbjct: 307 FAKNKLSKYAEARNEP-GADGSSNLSCYLHYGHISPVWIALLVKNIDNENSKNSRDAFLE 365
Query: 307 ELIVRRELADNFCFYQPN-YDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTAD 363
E+IVRREL+ NF Y PN YDS +G +A+K+L DH DKR HIY+ + E +T D
Sbjct: 366 EMIVRRELSVNFVVYNPNFYDSFEGIPNFAKKTLNDHRGDKRPHIYSLDDLESGRTDD 423
>gi|113195453|ref|YP_717590.1| DNA photolyase 2 [Clanis bilineata nucleopolyhedrosis virus]
gi|94958994|gb|ABF47395.1| DNA photolyase 2 [Clanis bilineata nucleopolyhedrosis virus]
Length = 372
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 79/216 (36%), Positives = 116/216 (53%), Gaps = 14/216 (6%)
Query: 13 PGRIRVLKQG----------SLDKK-RGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPV 61
P R+R+LK G +L+ G VVYWM RD RV+DNWA+I+A A + VP+
Sbjct: 94 PRRVRILKLGRSRTAVVNDDTLNGDVDGGVVYWMSRDSRVQDNWAMIYAQRLAIERQVPL 153
Query: 62 AVAFNLFDQFLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGA 121
V F L FL A RQ F+L GL+ +QR E I F + G + + ++V+
Sbjct: 154 HVCFCLTSSFLNASLRQFDFLLEGLKSVQRECHE-LNIGFHVLDGSGDLTLNDWVQTNNI 212
Query: 122 SLLVTDFSPLREIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKIN 181
S +V DF+PLR +R + ++++ V +VDAHN+VP W AS K E A T R K+
Sbjct: 213 SAVVCDFNPLRVVRDWVATVKSQLAPHVFFAQVDAHNIVPCWQASLKQEVYASTFRPKVL 272
Query: 182 KLLPEYLIDYP-MLEQPIEKWTGTRQSIDWDSIIAA 216
L +L ++P ++ P K T IDW ++ +
Sbjct: 273 NQLDRFLTEFPSVIVHPYGK-NRTAADIDWKYLLQS 307
>gi|393911740|gb|EJD76434.1| photolyase [Loa loa]
Length = 496
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 104/350 (29%), Positives = 169/350 (48%), Gaps = 32/350 (9%)
Query: 29 GPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRL 88
G V + R R + + + A +AN++ VPV V + Q Q F+L GL
Sbjct: 21 GKYVLLLIRCIRSQQSPSFSFASGKANEHGVPVLVTY--IYQPDRHNLAQRKFLLEGLNC 78
Query: 89 LQRNIEETFQILFFLFQGEAEDNIPNFVRECGASL-LVTDFSPLREIRRCKDKICNR-VS 146
L+ N+ L + ++ ++ A+ ++TD + LRE RR + + ++ +
Sbjct: 79 LENNLSRLHAPLLVIKANNNQEATKIVLKLSDAACEVITDAAYLREDRRLDENLNDKLIM 138
Query: 147 DSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQPIEKWTGTRQ 206
+V+ + +PV V K Y+A T+R L ++L+ EKW T +
Sbjct: 139 KCRRFTKVEGNVTIPVTVLCSKPAYNANTIRKVAWHFLDDFLL---------EKWNVTPK 189
Query: 207 --SIDWDSIIAAVL----------RKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLK 254
W SI+ L R A+ + GEDAA++V+ D F+ LK
Sbjct: 190 IHCKSWKSIVEYNLECTDISSEYTRAVADCKIGSVLKGGEDAALQVM----DYFIANNLK 245
Query: 255 NYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVRREL 314
Y +RN P + S LSPY+HFG ++ E +++ K A D FLEE++VRREL
Sbjct: 246 AYDKERNIP-NGKKQSLLSPYMHFGMLNPITIVNEVKQS-KAPKSAKDAFLEEMVVRREL 303
Query: 315 ADNFCFY-QPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTAD 363
A NF +Y + YD+ EWA+K++++H DKRE+IY ++ E+ +T D
Sbjct: 304 AHNFVYYYRDTYDTFDCLPEWAKKTMEEHRFDKREYIYNYKELEEGRTHD 353
>gi|300708917|ref|XP_002996629.1| hypothetical protein NCER_100256 [Nosema ceranae BRL01]
gi|239605945|gb|EEQ82958.1| hypothetical protein NCER_100256 [Nosema ceranae BRL01]
Length = 473
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 99/372 (26%), Positives = 175/372 (47%), Gaps = 44/372 (11%)
Query: 15 RIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGA 74
R+ VL + +G V+Y RD R+ +N + +A + + + + + D +
Sbjct: 4 RLTVLANSPI---KGNVLYISMRDLRLLNNHCIHYAYNLSYHYQSQMFIGVPIKD--IKC 58
Query: 75 KARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREI 134
Q +L + L++ E Q L+ DN+ FV+ ++ D+SPLRE
Sbjct: 59 NDVQYSLILENIEDLRK--ESIKQNLYLTIL----DNVNTFVKTNKIKNIILDWSPLRE- 111
Query: 135 RRCKDKICNRVSDSVTIH-----EVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLI 189
CN + D T ++D+HN+VP + + + ++ +++ ++ K EYL
Sbjct: 112 ---HIAFCNNIKDLCTKDKLFCIQIDSHNIVPCKIL-DVYKRTSSSVKIQLFKHFFEYLN 167
Query: 190 DYP--MLEQPIEKWTGTRQSID-----WDSIIAAVLRKGAEVPEIG----------WCES 232
+Y LE+ + T +++ WD++ +V + +
Sbjct: 168 EYDDLQLEKSVNDSNFTSKNMKFIINAWDTLEPHKFNDKKKVSSFKCNIPKYEPAKYYQG 227
Query: 233 GEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRC-ALEAR 291
A ++V+ D F + Y RNNP LS LSPY+H G +S Q+ L
Sbjct: 228 TYSAGLKVM----DDFFNNKFHIYNECRNNP-DVDGLSNLSPYIHLGILSPQKIIKLAYE 282
Query: 292 KARKLCPEAIDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIY 351
K K + +D ++ E+ + RE +++FC++ +YD++ GA EWAR SL +HA D+REH+Y
Sbjct: 283 KFYKKDKDNLDGYVAEIFIWRETSEHFCYHNKDYDNIMGALEWARDSLHEHAKDEREHLY 342
Query: 352 TKEQFEKAQTAD 363
TKE+ E +T D
Sbjct: 343 TKEELEFGKTND 354
>gi|149175245|ref|ZP_01853867.1| deoxyribodipyrimidine photolyase [Planctomyces maris DSM 8797]
gi|148845854|gb|EDL60195.1| deoxyribodipyrimidine photolyase [Planctomyces maris DSM 8797]
Length = 497
Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 110/388 (28%), Positives = 180/388 (46%), Gaps = 51/388 (13%)
Query: 15 RIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGA 74
RIR L Q SL K V+YWM ++R R N++L AV+ + + N P+ V L + A
Sbjct: 7 RIRPLNQASLQKNGDYVLYWMIANRRTRYNYSLQRAVELSKELNKPLLVFEALRCGYEWA 66
Query: 75 KARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECG--ASLLVTDFSPLR 132
R F+L+G+ + R+ + + ++ + + + A +VTD P
Sbjct: 67 SDRLHRFVLQGM-VDNRDSLQDSPVGYYCYVEPKAGHGSGLLSALATKACAVVTDDFPCF 125
Query: 133 EIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYL---- 188
I + + R+S V + +D++ ++P+ AS+ + +A R ++K LP++L
Sbjct: 126 FIPQMLKSVAPRLS--VRLEAIDSNGLLPLRAASQ-IYPTAYAFRRFLHKALPDHLDQTP 182
Query: 189 -------IDYPMLE----QPIEKWTGTRQSIDWDSIIAAVLRKGAEVP---EIGWCESGE 234
ID P + +E+W D ++ A A++P ++G +
Sbjct: 183 KINPLSHIDLPEFSSLPAKILERWPMAS-----DQLLQATPEVLADLPLDHQVG--PADF 235
Query: 235 DAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRC-------- 286
D M+ + FL R + Y +RN P + SGLSPYLHFG IS
Sbjct: 236 DGGMKAASKTLKQFLNVRFERYAEERNLP-EEEVTSGLSPYLHFGHISVHEVFKRVADRE 294
Query: 287 -----------ALEARKARKLCPEAIDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWA 335
A R E + FL+ELI REL N C+ + +YD + +WA
Sbjct: 295 DWNAAKVIDQKATGKRAGWWQMSETAEGFLDELITWRELGYNMCWQRDDYDQYESLPDWA 354
Query: 336 RKSLKDHASDKREHIYTKEQFEKAQTAD 363
R +L++HA+DKR+ YT E+FE+A+T D
Sbjct: 355 RTTLEEHAADKRDPCYTLEEFEQARTHD 382
>gi|348690945|gb|EGZ30759.1| DNA photolyase cryptochrome [Phytophthora sojae]
Length = 572
Score = 124 bits (311), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 117/397 (29%), Positives = 175/397 (44%), Gaps = 75/397 (18%)
Query: 29 GPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLG--------------- 73
G ++YWM R + N+AL +AV AN+ +P+ V + D+ +
Sbjct: 37 GYLLYWMQTSVRTKHNYALEYAVAAANELKLPLHVVYLFPDRSVAPPLQPVEDDEWKAEA 96
Query: 74 ---------AKARQLGFMLRGL-----RLLQRNIEETFQILFFLFQGEAEDNIPNFVREC 119
A R F L GL RL R + +F + +G+ + C
Sbjct: 97 VQDANAHAFATERHAQFALEGLADAHERLAGRGL--SFDVFHHRHKGDERPARNELLEFC 154
Query: 120 G--ASLLVTDFSPLREIRRCKDKICNRVSD---------SVTIHEVDAHNVVPVWVASEK 168
A+L+VTD LR R DK+ + V D I +V+ +VP V
Sbjct: 155 ARKAALVVTDRPYLRPWRAALDKLVSAVEDDGDAGSSNAGFGIVQVEGDVIVPAAV---- 210
Query: 169 LEYSAKTLRGKINKLLPEYLIDYPMLEQPIEKWTGTR--------------QSIDWDSII 214
Y+A+T+R +I K L Y++ P+ +E+ T + +D S
Sbjct: 211 --YAARTIRPRITKHLDRYVV--PLQSVSLEQEYQTEGKSLLAVLGSPKPLKPLDVTSSE 266
Query: 215 AAVLRKGA-----EVPEIGWCESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRAL 269
A G V + W G +AA +K +L +Y T+RN P A
Sbjct: 267 AVAKTLGLLDVDRSVKAVSWHFRGGEAAASAC--AKKFLTPDKLASYATERNEP-SLDAG 323
Query: 270 SGLSPYLHFGQISAQRCALEARKARKL--CPEAIDTFLEELIVRRELADNFCFY-QPNYD 326
S LS YL FG IS R L A K + + E + +FLEELIVRREL+ N Y Q NYD
Sbjct: 324 SDLSLYLRFGHISVVRVVLAAHKLKGVTRAKEGLASFLEELIVRRELSVNLVAYNQQNYD 383
Query: 327 SLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTAD 363
S++ +A+ +L++HA DKR+ +Y++E+ E QT D
Sbjct: 384 SMRCLPSYAQITLEEHAGDKRDQLYSREKLESFQTGD 420
>gi|386855815|ref|YP_006259992.1| Deoxyribodipyrimidine photo-lyase type II [Deinococcus gobiensis
I-0]
gi|379999344|gb|AFD24534.1| Deoxyribodipyrimidine photo-lyase type II [Deinococcus gobiensis
I-0]
Length = 328
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 87/242 (35%), Positives = 129/242 (53%), Gaps = 26/242 (10%)
Query: 131 LREIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLID 190
+R R+ +D + + V++ V++ VVPV VAS K EY+A+T+R KI++L +YL+
Sbjct: 1 MRVQRQWRDDLAAALK--VSLVAVESEAVVPVRVASPKQEYAARTIRPKIHRLWQDYLV- 57
Query: 191 YPMLEQPIEKWTGTRQSIDWD--------SIIAAVLRKGAEVPEIGWCESGEDAAMEVLK 242
P++ ++ DWD + +AA L V G GE AA+ L
Sbjct: 58 ------PLDTHDLAHRADDWDPGEAVDDPAALAARLPIDQSV-GAGHETGGEAAALARL- 109
Query: 243 GSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAID 302
+ F+ L +Y RN+P + S LS YLH+G +S AL A D
Sbjct: 110 ---EEFIAHDLAHYHERRNDPTIDGS-SRLSAYLHYGHLSPLTVALAALDHPG---PGTD 162
Query: 303 TFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTA 362
LEEL+VRREL+ NFC+Y P+YD +G +WARK+L++H D R YT EQ ++ +T
Sbjct: 163 ALLEELVVRRELSFNFCWYNPDYDRYEGVPDWARKTLEEHEDDPRPAHYTPEQLDRGETE 222
Query: 363 DP 364
DP
Sbjct: 223 DP 224
>gi|294888807|ref|XP_002772597.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
gi|239876941|gb|EER04413.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
Length = 198
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 77/198 (38%), Positives = 107/198 (54%), Gaps = 14/198 (7%)
Query: 7 PSTAVQPGRIRVLKQGSLD-KKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAF 65
P ++V P RIRVL Q GPV+YWM R+ R RDNWALIHA + A ++ P+ V +
Sbjct: 2 PQSSVSPDRIRVLNQPVTGLTSPGPVIYWMSREIRSRDNWALIHAQNVALRSKRPLLVVY 61
Query: 66 NLFDQFLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRE----CGA 121
NL +LG RQ F + GL+++ N+ + L F EA P F+ + G
Sbjct: 62 NLAVGYLGGGLRQHAFKVGGLKVVAANLSQ----LNIPFAIEASPKFPAFLADITERVGC 117
Query: 122 SLLVTDFSPLR---EIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRG 178
+VTDF+PLR E K R+ + VDAHNVVP WV S+K+E +A T+R
Sbjct: 118 KYVVTDFTPLRLNKEWVAAFTKHAKRL--DIRFELVDAHNVVPCWVTSDKMERAAVTIRP 175
Query: 179 KINKLLPEYLIDYPMLEQ 196
K+ E+ YP L++
Sbjct: 176 KLWHHFDEFCTKYPRLKR 193
>gi|116750550|ref|YP_847237.1| DNA photolyase, FAD-binding [Syntrophobacter fumaroxidans MPOB]
gi|116699614|gb|ABK18802.1| Deoxyribodipyrimidine photo-lyase type II [Syntrophobacter
fumaroxidans MPOB]
Length = 468
Score = 122 bits (305), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 110/343 (32%), Positives = 158/343 (46%), Gaps = 27/343 (7%)
Query: 31 VVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQ 90
V+YWM + QR N AL +A +AN P+ V F L + A R FML GL
Sbjct: 25 VLYWMQQSQRSEFNHALEYAAHRANSLRQPLVVVFGLTGDYPEANLRHYTFMLEGLEETG 84
Query: 91 RNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICNRVSDSVT 150
+++ I + D E AS LV D +R + + +
Sbjct: 85 ASLQAR-GIKLVVMHASPPDAALAAASE--ASFLVCDRGYMRH--QALWRAAVAAAAPCP 139
Query: 151 IHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQPIEKWTGTRQSIDW 210
+ +V+A +VPV AS K EY+A+TLR +++ +L + P E + S+D
Sbjct: 140 VVQVEADAIVPVETASSKAEYAARTLRPRVHTHARSFLTE----PAPAEL---RKSSLDA 192
Query: 211 D------SIIAAVLRK---GAEVPEIG-WCESGEDAAMEVLKGSKDGFLTKRLKNYPTDR 260
D + A VLRK VP + + G A E+ + FL + Y DR
Sbjct: 193 DLNGMDVTDTARVLRKLRADRSVPSVTRYYRGGTSRAKELF----ETFLRDDIGRYTEDR 248
Query: 261 NNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVRRELADNFCF 320
N P A+S +S YLHFGQIS AL + + FLE+L+VRRELA NF
Sbjct: 249 NQP-HAGAVSHMSMYLHFGQISPVYLALRLGEVGRERDTQKAAFLEQLLVRRELALNFVH 307
Query: 321 YQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTAD 363
+ NYDS + WAR++L H D+RE Y +++ E +T D
Sbjct: 308 HTRNYDSYECLPRWARETLARHRKDRREFRYGRQELENLRTHD 350
>gi|343485400|dbj|BAJ51054.1| deoxyribodipyrimidine photo-lyase [Candidatus Caldiarchaeum
subterraneum]
Length = 457
Score = 122 bits (305), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 108/364 (29%), Positives = 176/364 (48%), Gaps = 34/364 (9%)
Query: 11 VQPGRIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQ 70
++P R+ L Q +LDK+ +VY M R N AL +AV +AN+ + V +NL ++
Sbjct: 8 LRPERVTSLAQAALDKRGEYLVYVMDASLRAYGNHALEYAVFEANRLGRSLVVVYNLDEK 67
Query: 71 FLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSP 130
R+L F+ L+ ++E LF +++ V E + ++ ++
Sbjct: 68 QPFMNTRKLHFIHGALK----KVDERLSRRGILFLVRKTESLLKLVNEAVSVVVDAGYTG 123
Query: 131 LREIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLID 190
++ R K + DSV + E D VVPV AS + E A+T+R K+ L +L
Sbjct: 124 HQQTFR---KTLAKYCDSVKMVEGDV--VVPVKTASTRAEPYARTIRPKLLNKLDNFLET 178
Query: 191 YPMLEQPIEKWTGTRQSIDWDSIIAAVLRKGAE--VPEIGWCE---------SGEDAAME 239
P E P+++ S D D I + + E + + G E GED A +
Sbjct: 179 VP--EIPVKQ-----SSTDLD--IEGLRYETFEHLLKDFGSIEFVEPVKDVVGGEDEAHK 229
Query: 240 VLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPE 299
L + F+ +RL Y +R++P A S LSPYL +G IS + + R+
Sbjct: 230 RL----ETFVGERLDRYAAERSDP-GSEACSELSPYLRYGMISPVQVLKRVFEYRRRGDV 284
Query: 300 AIDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKA 359
+++ + EL+V RELA N Y P ++ +G EWAR++L HA D+RE +Y+ + E+A
Sbjct: 285 NVESLINELVVWRELARNGEVYNPFFEKYEGLPEWARETLSIHAGDRREQVYSMSELERA 344
Query: 360 QTAD 363
T D
Sbjct: 345 DTHD 348
>gi|405360763|ref|ZP_11025704.1| Deoxyribodipyrimidine photolyase, type II [Chondromyces apiculatus
DSM 436]
gi|397090452|gb|EJJ21316.1| Deoxyribodipyrimidine photolyase, type II [Myxococcus sp.
(contaminant ex DSM 436)]
Length = 488
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 112/376 (29%), Positives = 171/376 (45%), Gaps = 42/376 (11%)
Query: 10 AVQPGRIRVLKQGSL-DKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLF 68
V R++V+K L +R V+YW + R N AL A+ N+ +PV V +
Sbjct: 11 GVDSSRVQVVKDIPLPSGRREFVLYWCMVNHRAEQNHALDAAIGLGNQLGLPVVVYQAIR 70
Query: 69 DQFLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECG--ASLLVT 126
+ A R + L G+ + + + +++ P E G A+ +V+
Sbjct: 71 PDYPYASDRLHAWALEGMMDMATDCAARGLPYWLELPRTTKEHRPRLA-ELGRRAAAVVS 129
Query: 127 DFSP-------LREIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGK 179
D P LR + D V + VDA VVP+ + + + A TLR K
Sbjct: 130 DLFPTFIIPGHLRGAAKALD---------VPLFAVDASCVVPMQRIATR-QIGAYTLRPK 179
Query: 180 INKLLPEYLIDYPMLEQPIEKWTGTRQSIDWDSIIAAVLRKG----------AEVPEIGW 229
+ KL PEYL G + S D+D+ A R+ A + E G
Sbjct: 180 LKKLWPEYLERTVPSRDVKAAAAGRKLSPDFDTADAHEAREALHTFDLDHAVAPISERGG 239
Query: 230 CESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALE 289
++G LK +D F+ + L++Y T RN+P ++ SGLSP+ H+G + A
Sbjct: 240 RKAG-------LKAMRD-FVRRNLESYDTGRNDPGLAQS-SGLSPFFHWGNLFPGEAARA 290
Query: 290 ARKARKLCPEAIDTFLEELIVRRELADNFCFYQPNYDSLKGAW--EWARKSLKDHASDKR 347
A KAR ++ +F+EEL+VRREL N+C++ P L A WAR+SL H D R
Sbjct: 291 AIKARGAKDPSVQSFIEELLVRRELGFNYCYHTPGPQQLSVASLPPWARESLTKHQKDAR 350
Query: 348 EHIYTKEQFEKAQTAD 363
EH Y+ +Q E A+T D
Sbjct: 351 EHRYSMKQLETARTED 366
>gi|313672005|ref|YP_004050116.1| deoxyribodipyrimidine photo-lyase [Calditerrivibrio nitroreducens
DSM 19672]
gi|312938761|gb|ADR17953.1| Deoxyribodipyrimidine photo-lyase [Calditerrivibrio nitroreducens
DSM 19672]
Length = 444
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 105/352 (29%), Positives = 175/352 (49%), Gaps = 21/352 (5%)
Query: 15 RIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGA 74
R+R +K+ S KK ++YWM RV N +L A A ++P+ V + + A
Sbjct: 6 RVRQIKKSS--KKGDYILYWMQGAFRVEYNHSLEFAKYLALSKDLPLKVLVVVDFNYKDA 63
Query: 75 KARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREI 134
R F + G+ L ++ +I F + G ++ +P + + A L+TD + ++ +
Sbjct: 64 NYRHFKFFIDGILELIDKFKD-LKISFHVKIGSFKEIVPQYSK--NADTLITDKAYIKWL 120
Query: 135 RRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPML 194
+ +++I N+ + +TI+EVD + +VPV AS K EY A T+R KI+KL ++L D+ +
Sbjct: 121 KDVRNEIYNK--NDITIYEVDTNLMVPVQAASPKCEYGAYTIRPKIHKLKEKFLNDFVVF 178
Query: 195 EQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCE--SGEDAAMEVLKGSKDGFLTKR 252
+ + G ++ D + K V + + GE A ++L+ FL ++
Sbjct: 179 D-----YKGRSYEVENDLNGLNIDDKLKSVHYLKPVDFIGGESKADKLLR----DFLNEK 229
Query: 253 LKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVRR 312
+ R +P S LS YLHFG IS + EA K P+ +T E+L+VRR
Sbjct: 230 YLFFAEKRGDP-SLDVESNLSFYLHFGFISPIKILKEAIKI-DTDPKNYETLFEQLVVRR 287
Query: 313 ELADNFCFYQPNYDSLKGAW-EWARKSLKDHASDKREHIYTKEQFEKAQTAD 363
ELA NF +Y N L WA K++ +H D R+++Y E E +T D
Sbjct: 288 ELAHNFTYYCDNISDLFSFLPNWAVKTVIEHKDDIRKYLYKLEDLENFKTHD 339
>gi|291334324|gb|ADD93984.1| deoxyribodipyrimidine photolyase [uncultured marine bacterium
MedDCM-OCT-S09-C3]
Length = 496
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 106/386 (27%), Positives = 185/386 (47%), Gaps = 65/386 (16%)
Query: 31 VVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQ 90
VVYWM +R R N AL HAV+ AN+++VP+ V L A R F+L+G+ +
Sbjct: 21 VVYWMTSARRARWNHALDHAVELANEHHVPLIVVECLALGHRYANDRIHTFVLQGM-MDN 79
Query: 91 RNIEETFQILFFLF----QGEAEDNIPNFVRECGASLLVTDFSPL--REIRRCKDKICNR 144
R + E + + + + +A + +F ++ ++++ D+ R++ R K+
Sbjct: 80 RKLFEMSAVTYVPYVETKKFQAGGLLQSFAKD-AVAVVIDDYPTYMPRDVARRAKKLTQ- 137
Query: 145 VSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQPIEKWTGT 204
++ +D++ VVP+ A E+ +A + R I++ + ++ D P L P+++
Sbjct: 138 ----CSVRCIDSNGVVPL-RAPERSFSTAHSFRRYIHQNVLNFIAD-PPLSHPLKELNDV 191
Query: 205 RQSIDWDSIIAAVLRKGAEVP----EIGW-----CESGEDA--AMEV------LKGSKDG 247
SII + +P E W G DA A+++ + + G
Sbjct: 192 PDG----SIIVKQCFEEVNIPLTPLEFIWRVSEASREGRDALQALDIDHDVPPVDSRRGG 247
Query: 248 ----------FLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLC 297
F+ +RL Y DRN+P + SGLSP+LHFG IS+ E ++K
Sbjct: 248 SVTARTELKKFIEQRLNTYHVDRNHPER-HGGSGLSPWLHFGHISSFEIVNEVLTSQKWN 306
Query: 298 P------------------EAIDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSL 339
P E + FL+++I REL +C+ P++ S + EWA+K+L
Sbjct: 307 PMLITPPHNGRRAGWWGLSEGAEAFLDQVITWRELGFVYCYEHPDHTSYQTLPEWAKKTL 366
Query: 340 KDHASDKREHIYTKEQFEKAQTADPV 365
++HA+D+R ++YT EQ E A+T DP+
Sbjct: 367 EEHATDERPYVYTFEQLENAETHDPL 392
>gi|442320785|ref|YP_007360806.1| deoxyribodipyrimidine photolyase [Myxococcus stipitatus DSM 14675]
gi|441488427|gb|AGC45122.1| deoxyribodipyrimidine photolyase [Myxococcus stipitatus DSM 14675]
Length = 486
Score = 118 bits (295), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 118/369 (31%), Positives = 172/369 (46%), Gaps = 30/369 (8%)
Query: 10 AVQPGRIRVLKQGSLDKK-RGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLF 68
AV R+ V+K L R V+YW + R +N AL A+ N +PV V L
Sbjct: 11 AVDSARVIVVKDVPLPASGRDFVLYWCMVNHRAEENHALDTAIALGNLLGLPVVVYQALR 70
Query: 69 DQFLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECG--ASLLVT 126
A R + L G+ L + + + +++ + E G A+ +V+
Sbjct: 71 PDHPHASDRLHAWALEGMADLAQALASRGIPYWLELPRHPREHVAR-IAELGRRAAAVVS 129
Query: 127 DFSPLREIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPE 186
DF P I + V + VDA VVP+ + L+ A TLR K+ KL PE
Sbjct: 130 DFFPTYIIPGHLRGAARTLE--VPLFAVDASCVVPMQRIA-TLQAGAYTLRPKLQKLWPE 186
Query: 187 YLIDYPMLEQPIEKWTGTRQSIDWDSIIAAVLRKG-------AEVPEIGWCESGEDAAME 239
YL ML K + ++ A R+ VP + G AA++
Sbjct: 187 YLGR--MLRPRPLKVRAHTLAPGFELADAREARRTLSGFHIDHSVPPLE-ERGGRKAALK 243
Query: 240 VLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPE 299
L D FL ++L+ Y +RN+P + SGLSP+ H+G + A A A +AR
Sbjct: 244 AL----DTFLHQKLEGYDVERNDPGRSHQ-SGLSPFFHWGNLFAGEAARAALRARGTDDP 298
Query: 300 AIDTFLEELIVRRELADNFCFYQP-----NYDSLKGAWEWARKSLKDHASDKREHIYTKE 354
A+ +FLEEL+VRREL N+CF+ P + +SL G WAR++L+ H D REH+Y+ E
Sbjct: 299 AVRSFLEELLVRRELGFNYCFHTPEARQLSTESLPG---WARETLRTHQKDAREHLYSLE 355
Query: 355 QFEKAQTAD 363
Q E A TAD
Sbjct: 356 QMEHAHTAD 364
>gi|429962002|gb|ELA41546.1| deoxyribodipyrimidine photolyase [Vittaforma corneae ATCC 50505]
Length = 456
Score = 118 bits (295), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 95/344 (27%), Positives = 166/344 (48%), Gaps = 22/344 (6%)
Query: 26 KKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRG 85
++ V+Y M RDQR+ +N ++ + + KN + + L L +Q F+L G
Sbjct: 32 QEHSNVLYIMSRDQRIHENHSVALSYSLSYKNKSKLLIGIELSK--LQMNEKQKTFILEG 89
Query: 86 LRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLR-EIRRCKD--KIC 142
L L + ++ ++ + +I F+ +V DF+P+R I+R + KIC
Sbjct: 90 LVELNKEAKKYNLHVYNI------TDIEPFIISNSIGTVVLDFNPMRVYIKRQNEISKIC 143
Query: 143 NRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQPIEKWT 202
+ ++ + D+HN+VP + + ++K +R + K +YL +Y +E
Sbjct: 144 EKHKTALFV--CDSHNIVPCKTL-KVYKRTSKAVRTDLYKEWRKYLKEYEKIEPHKFNKP 200
Query: 203 GTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNN 262
T + D ++LRK + + G M+ L + F +R +Y RN+
Sbjct: 201 ETESGNNTDEF-ESLLRKNPRDKQCTFT-GGYSEGMKQL----ELFFCERFSSYSKGRND 254
Query: 263 PLKPRALSGLSPYLHFGQISA-QRCALEARKARKLCPEAIDTFLEELIVRRELADNFCFY 321
P + LS LSPY+H G ISA Q L + K + F+ E+ + RE A++F ++
Sbjct: 255 P-ETNVLSDLSPYIHAGHISALQTIFLTIERYGKDESDNYQAFINEMFIWRETAEHFVYH 313
Query: 322 QPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPV 365
+ NYD++ GA WA+ +L H D+R IY + Q E A+T DP+
Sbjct: 314 EKNYDNINGALAWAKNTLLYHVRDQRPAIYDRNQLESARTDDPL 357
>gi|338535392|ref|YP_004668726.1| deoxyribodipyrimidine photolyase [Myxococcus fulvus HW-1]
gi|337261488|gb|AEI67648.1| deoxyribodipyrimidine photolyase [Myxococcus fulvus HW-1]
Length = 488
Score = 117 bits (294), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 109/384 (28%), Positives = 167/384 (43%), Gaps = 58/384 (15%)
Query: 10 AVQPGRIRVLKQGSL-DKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLF 68
V R++V+K L +R V+YW + R N AL A+ N +PV V +
Sbjct: 11 GVDSARVQVVKDLPLPSGRREFVLYWCMVNHRAEQNHALDAAIGLGNHLGLPVVVYQAIR 70
Query: 69 DQFLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFV---RECGASLLV 125
+ A R + L G+ + + ++++ P R A +V
Sbjct: 71 PDYPYASDRLHAWALEGMMDMAAGCAARGLPYWLELPRTSKEHQPRLAWLGRRAAA--VV 128
Query: 126 TDFSP-------LREIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRG 178
+D P LR R D V + VDA VVP+ + + + A TLR
Sbjct: 129 SDLFPTFIIPGHLRGAARALD---------VPLFAVDASCVVPMQRIATR-QVGAYTLRP 178
Query: 179 KINKLLPEYL--------IDYPMLEQPIEKWTGTR---------QSIDWDSIIAAVLRKG 221
K+ KL PEYL + + +E T + D+D +A + +G
Sbjct: 179 KLKKLWPEYLERTVPHRAVKAAAAGRKLEPGFATSDAREAREALHTFDFDHGVAPLQERG 238
Query: 222 AEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQI 281
G A ++ L+ F+ +RL+ Y T RN+P ++ SGLSPY H+G +
Sbjct: 239 -----------GRKAGLQALRA----FVQRRLEGYDTGRNDPGLQQS-SGLSPYFHWGNL 282
Query: 282 SAQRCALEARKARKLCPEAIDTFLEELIVRRELADNFCFYQPNYD--SLKGAWEWARKSL 339
A A +AR ++ F+EEL+VRREL N+CF+ P S+ WAR++L
Sbjct: 283 FPGEAARAAIQARGANDASVQGFIEELLVRRELGFNYCFHTPEKQQLSVSSLPPWARETL 342
Query: 340 KDHASDKREHIYTKEQFEKAQTAD 363
H D REH Y+ +Q E A+TAD
Sbjct: 343 TRHQQDAREHRYSLKQLETARTAD 366
>gi|402471527|gb|EJW05244.1| deoxyribodipyrimidine photolyase [Edhazardia aedis USNM 41457]
Length = 431
Score = 117 bits (293), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 97/350 (27%), Positives = 166/350 (47%), Gaps = 30/350 (8%)
Query: 19 LKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQ 78
+KQ + + R V+Y M RD R++DN ++I + + N + N + RQ
Sbjct: 5 IKQSNSIQHRKNVLYIMKRDFRIQDNHSVILGYEMSEHNKSEFYILINPNEYNKNLNTRQ 64
Query: 79 LGFMLRGLRLLQRNIEE-TFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIR-- 135
FM +G+ + E ++F + E V + ++T+ SPLRE +
Sbjct: 65 KVFMRQGINEILNECENLNIHVIFNMLFNEV-------VYKYQIDCIITEESPLREAKLF 117
Query: 136 -RCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPML 194
+ C + + + ++ D+HN+VP V K SAK ++ + K P YL ++P+L
Sbjct: 118 HSILNDFC--IDNRIALYFCDSHNIVPS-VCLNKYIKSAKVVKENLYKYWPIYLSEFPVL 174
Query: 195 EQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLT-KRL 253
++ ++ +I + +V +I C + EV K ++ F K+L
Sbjct: 175 KR--HRYNKLVNNIPF------TYTDINDVSDIDVCGGYTNGMKEVNKFIEEKFHNFKKL 226
Query: 254 KNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVRRE 313
+N D NN +S L P++ GQI +Q AL K + E FL E+ + +E
Sbjct: 227 RN-QADFNN------VSNLQPWILSGQIGSQSLALYICKKYPIDDENTQDFLNEIFIWKE 279
Query: 314 LADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTAD 363
A++FC + NYD+LKGA WA ++L H +DKR I T++ EK +T +
Sbjct: 280 TAEHFCRNECNYDNLKGASTWAVETLDAHKNDKRSEICTEKNLEKLKTKN 329
>gi|159469510|ref|XP_001692906.1| CPD photolyase class II [Chlamydomonas reinhardtii]
gi|158277708|gb|EDP03475.1| CPD photolyase class II [Chlamydomonas reinhardtii]
Length = 946
Score = 117 bits (293), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 63/116 (54%), Positives = 75/116 (64%), Gaps = 5/116 (4%)
Query: 11 VQPGRIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVD--QANKNNVPVAVAFNLF 68
V P R+RVLK GS+ K GPVVYWM RDQR+ DNWAL+HA++ Q + VAVAFNL
Sbjct: 50 VNPKRVRVLKPGSIGK--GPVVYWMSRDQRLADNWALLHAIEAAQGAAGSSQVAVAFNLV 107
Query: 69 DQFLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLL 124
FLGA ARQ GFMLRGLR L +E I F+L +G+ +P V GA LL
Sbjct: 108 PAFLGAGARQFGFMLRGLRQLAPRLEAR-GIKFYLLKGDPVHTLPQLVSGLGAGLL 162
>gi|87311465|ref|ZP_01093585.1| deoxyribodipyrimidine photolyase [Blastopirellula marina DSM 3645]
gi|87285877|gb|EAQ77791.1| deoxyribodipyrimidine photolyase [Blastopirellula marina DSM 3645]
Length = 494
Score = 114 bits (286), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 105/382 (27%), Positives = 181/382 (47%), Gaps = 39/382 (10%)
Query: 15 RIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGA 74
R+ + + +R V+YWM ++R R N++L AVD A + P+ V L + A
Sbjct: 8 RLANCNEAPVRTERDYVLYWMIANRRTRCNFSLQRAVDWAQQLKKPLIVFEALRIDYPWA 67
Query: 75 KARQLGFMLRGLRLLQRNIEETFQILFFLF--QGEAEDNIPNFVRECGASLLVTDFSPLR 132
R F+L+G+R + + +L++ + G+ ED+ + ++VTD P
Sbjct: 68 SRRFHRFVLQGMRDNAAALRRS-PVLYYPYVEPGKHEDHGLFAALAARSCVIVTDDFPCF 126
Query: 133 EIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYP 192
+ R + RV V + +VD++ ++P+ A+++ A + R ++ L ++L+D+P
Sbjct: 127 FLPRMVRAVARRVD--VLLEQVDSNGILPM-RAADRTFTVAHSFRRFLHHQLRDHLVDFP 183
Query: 193 MLEQPIEKWTGTRQS--------IDWDSIIAAVLRKGAEVPE-IGWCESGEDAAME---- 239
+ P++ R + ++ + VL +E + + +S DA ME
Sbjct: 184 QAD-PLQDAQIPRAASKLIANIQTNYPPASSEVLSAASEALDALPIDQSVGDAVMEGGSV 242
Query: 240 VLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISA-----QRCALEARKAR 294
+ + D FL RL Y +RN+P + A SGLSPYLHFG ISA Q E+
Sbjct: 243 AAQQTLDSFLGDRLLRYGEERNSP-ESDAASGLSPYLHFGHISAHDIFVQLSERESWNVS 301
Query: 295 KLCPEAI-------------DTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKD 341
L +A ++FL+ELI RE+ N C + NYD + +WA +L +
Sbjct: 302 HLADKATGSREGWWNMSTDAESFLDELITWREVGYNMCSRESNYDRYQSLPDWALVTLGE 361
Query: 342 HASDKREHIYTKEQFEKAQTAD 363
H D R ++Y Q E ++T D
Sbjct: 362 HQKDPRPYVYDLAQLESSRTHD 383
>gi|296121685|ref|YP_003629463.1| DNA photolyase FAD-binding protein [Planctomyces limnophilus DSM
3776]
gi|296014025|gb|ADG67264.1| DNA photolyase FAD-binding protein [Planctomyces limnophilus DSM
3776]
Length = 493
Score = 111 bits (277), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 106/380 (27%), Positives = 173/380 (45%), Gaps = 38/380 (10%)
Query: 15 RIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGA 74
R+R L L K V+YWM +R++ N+ L AV +A N+P+ + + + +
Sbjct: 11 RVRQLNSCPLKKSGRYVLYWMISARRLQWNFGLQQAVHRAQTLNLPLVILEPIGCRAKWS 70
Query: 75 KARQLGFMLRGLRLLQRNIEE---TFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPL 131
R F++ G+ +E + G + + ++ A ++TD P
Sbjct: 71 SVRFHHFVIEGMAEHHALCQERGIAYHPYVEPEPGHGVGLVEAYAQKAAA--VITDDFPC 128
Query: 132 REIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDY 191
+ R + R+ V + VD++ + P+ A++++ +A R + K + YL ++
Sbjct: 129 YFLPRMVQTLGQRI--DVPLECVDSNGIFPM-RATDQVFTTAHAFRRFLQKNIKPYLSEF 185
Query: 192 PM---LEQPIEKWTGTRQ-SIDWDSIIAAVL-RKGAEVPEIGWCESGEDAAME-VLKGSK 245
P+ L PI Q + W +L R + + ++ ++ + AA LK ++
Sbjct: 186 PVADSLAGPILSMEIPGQIARKWSPATPGLLNRDASALAQLPIDQTVQPAAFRGGLKAAQ 245
Query: 246 DG---FLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQR-----CALEARKARKLC 297
+ F RL Y DRNNP + A SGLSPYLHFG +SA A E+ K L
Sbjct: 246 EAVARFFKSRLPRYADDRNNPEQ-EAASGLSPYLHFGHVSAHEVFSRLAAKESWKPEHL- 303
Query: 298 PE--------------AIDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHA 343
PE A + FL+ELI RE+ NF ++ +YD + WAR+SL+ HA
Sbjct: 304 PEKASGSREGWWQMSPAAEAFLDELITWREVGYNFTSHREDYDQYESLPAWARQSLEKHA 363
Query: 344 SDKREHIYTKEQFEKAQTAD 363
D R +Y Q E AQT D
Sbjct: 364 GDHRPSLYDLHQLEIAQTHD 383
>gi|404494387|ref|YP_006718493.1| deoxyribodipyrimidine photo-lyase [Pelobacter carbinolicus DSM
2380]
gi|77546390|gb|ABA89952.1| deoxyribodipyrimidine photolyase, putative [Pelobacter carbinolicus
DSM 2380]
Length = 490
Score = 108 bits (270), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 98/370 (26%), Positives = 165/370 (44%), Gaps = 44/370 (11%)
Query: 31 VVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQ 90
++YWM +R+ N+AL A+ A K + P+ V L A R F L G+
Sbjct: 24 ILYWMNATRRLSWNFALQRALSWARKLDRPLLVVETLPCDHPHANLRHHAFALDGMADNA 83
Query: 91 RNIEETFQILFFLFQGEAEDNIPNFVREC-GASLLVTDFSPLREIRRCKDKICNRVSDSV 149
R + + + + + NI A +++ D PLRE +++ R+S
Sbjct: 84 RYMADHPATYYPFVEDQPGQNIELIAALAKHACVVLCDLRPLRESLGETEQLAGRLSGR- 142
Query: 150 TIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQPIE---------- 199
+ VD++ ++P+ +A+++ +A +LR + + L +L++ P+ E E
Sbjct: 143 -LERVDSNGILPL-LAADREFTTAYSLRRFLQRHLLPHLLNMPLPEPLAEHTLPPCPAVP 200
Query: 200 -----KWTGT-RQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRL 253
+W RQ + D L G P + + G +AA + L D FL + L
Sbjct: 201 SAIRKRWPAADRQLLTEDRSRLHNLPIGQNTPAVP-TKGGSEAARKAL----DLFLREHL 255
Query: 254 KNYPTDRNNPLKPRALSGLSPYLHFGQISAQRC---------------ALEARKARKL-- 296
Y RN P + SGLSPYL +G IS+ LE R R
Sbjct: 256 DLYVAHRNQPQR-DVTSGLSPYLRWGHISSHEIVQRLLDREGWHPSDLGLETRGQRSGWW 314
Query: 297 -CPEAIDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQ 355
+ FL++L+ REL FCF + +YD ++ WA+ +L+DH D R ++Y+ E+
Sbjct: 315 GVGADAEAFLDQLVTWRELGHLFCFKRHDYDRMESLPAWAQTTLQDHMQDPRPYLYSLEE 374
Query: 356 FEKAQTADPV 365
F+ +T DP+
Sbjct: 375 FQAGRTHDPL 384
>gi|412989100|emb|CCO15691.1| deoxyribodipyrimidine photolyase [Bathycoccus prasinos]
Length = 579
Score = 108 bits (269), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 112/397 (28%), Positives = 171/397 (43%), Gaps = 70/397 (17%)
Query: 31 VVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQ 90
V+YWM QR R N AL AV++AN + PV VAF L + A R FM++GL ++
Sbjct: 65 VLYWMQSSQRARYNEALEVAVERANAHKKPVVVAFALTCDYEDANERHYNFMVKGLLDVK 124
Query: 91 RNIEETFQILFFLFQGEAE--------DNIPNFVRECG--ASLLVTDFSPLREIRRCKDK 140
+ + FFL + + IP + A ++TD LR +R ++
Sbjct: 125 EGLSRR-NVPFFLVTKKKKRKEEKEDASGIPEAILSLSKNAIEIITDCGYLRVLRIWRET 183
Query: 141 ICNRVSDSVTIHEVDAHNVVPVWV---ASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQP 197
+ +VS + I EV+ VVPV+ + KL+ SA + R E+ + P LE+
Sbjct: 184 LARKVS--IPITEVETDVVVPVFAHLSSRPKLDVSAASFRAFALPKSFEHTENVPDLEEI 241
Query: 198 IEKWTG-----TRQSI-------------------------------DWDSIIAAVLRKG 221
+ W R S+ D I++ + +
Sbjct: 242 VPLWNAEDVKKARMSVMDVLDDRFAFVIDGRIASSSSSSTPSTSAKQTADDILSVLKTEF 301
Query: 222 A--EVPEIGWCE----SGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPY 275
E P I C+ GE AM L D + ++ D + L+ S L+PY
Sbjct: 302 GLKETPHIPKCDKYHIGGEIEAMLKLDAFLDSVVLRKYGELRNDCSLGLQ----SHLAPY 357
Query: 276 LHFGQISAQRCALEAR------KARKLCPEAIDTFLEELIVRRELADNFCFYQ-PNYDSL 328
+H+GQIS A AR K + ++++ FL+ELI+RREL F + YD+
Sbjct: 358 IHYGQISVLHVAKRARRFANAHKTDEKIQKSVEVFLDELIIRRELGIQFVVKKRETYDTF 417
Query: 329 KGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPV 365
W +L+ H D+RE YT E+ EK QT DP+
Sbjct: 418 DALPIWCINTLEKH-KDERETRYTYEELEKGQTDDPL 453
>gi|108759895|ref|YP_632311.1| deoxyribodipyrimidine photolyase [Myxococcus xanthus DK 1622]
gi|108463775|gb|ABF88960.1| deoxyribodipyrimidine photolyase [Myxococcus xanthus DK 1622]
Length = 488
Score = 107 bits (268), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 108/380 (28%), Positives = 169/380 (44%), Gaps = 50/380 (13%)
Query: 10 AVQPGRIRVLKQGSL-DKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLF 68
V R++V+K L +R V+YW + R N AL A+ N +PV V +
Sbjct: 11 GVDSARVQVVKDLPLPSGRRDFVLYWCMVNHRAEQNHALDAAIGLGNHLGLPVVVYQAIR 70
Query: 69 DQFLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECG--ASLLVT 126
+ A R + L G+ + + ++++ P + G A+ +V+
Sbjct: 71 PDYPHASDRLHAWALEGMMDMATGCAARGLPYWLELPRTSKEHRPRLA-QLGRRAAAIVS 129
Query: 127 DFSPLREIR---RCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKL 183
D P I R K + V + VDA VVP+ + + + A TLR K+ KL
Sbjct: 130 DLFPTYIIPGHLRGAAKALD-----VPLFAVDASCVVPMQRIATR-QIGAYTLRPKLKKL 183
Query: 184 LPEYLIDYPMLEQPIEKWTGTRQ------------------SIDWDSIIAAVLRKGAEVP 225
PEYL D + + ++ R+ + D+D +A + +G
Sbjct: 184 WPEYL-DRAVPNRAVKAAAAGRKLEPDFATSDARESRESLDAFDFDHSVAPIQERG---- 238
Query: 226 EIGWCESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQR 285
G A ++ L+ F+ +RL+ Y RN+P R S LSP+ H+G + A
Sbjct: 239 -------GRKAGLDALQA----FVHQRLEGYDEGRNDPGLARQ-SNLSPFFHWGNLFAGE 286
Query: 286 CALEARKARKLCPEAIDTFLEELIVRRELADNFCFYQPNYDSLKGAW--EWARKSLKDHA 343
A A +AR ++ FLEEL+VRREL N+CF+ P L A WA+++L H
Sbjct: 287 AARAAIRARGAQDASVQGFLEELLVRRELGFNYCFHTPGPQQLSVASLPPWAKETLTRHQ 346
Query: 344 SDKREHIYTKEQFEKAQTAD 363
D REH Y+ +Q E A+TAD
Sbjct: 347 KDAREHRYSLKQLETARTAD 366
>gi|41023443|emb|CAE52697.1| hypothetical photolyase [Fowlpox virus isolate HP-438/Munich]
Length = 200
Score = 107 bits (268), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 57/152 (37%), Positives = 87/152 (57%), Gaps = 1/152 (0%)
Query: 24 LDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFML 83
++K V+YWMFRDQRV+DNWALI+A A K +P+ + F + +F +R F++
Sbjct: 32 INKNSKVVLYWMFRDQRVQDNWALIYAQRLALKLKIPLRICFCVVPKFHTTTSRHFMFLI 91
Query: 84 RGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICN 143
GL+ + + I F L G + IP V++ +++TDF PLR R +
Sbjct: 92 SGLKEVAEECKR-LCIGFSLIYGVPKVIIPCIVKKYRVGVIITDFFPLRVPERLMKQTVI 150
Query: 144 RVSDSVTIHEVDAHNVVPVWVASEKLEYSAKT 175
+ D++ +VDAHN+VP W AS+K EY A+T
Sbjct: 151 SLPDNIPFIQVDAHNIVPCWEASDKEEYGART 182
>gi|220918322|ref|YP_002493626.1| DNA photolyase FAD-binding [Anaeromyxobacter dehalogenans 2CP-1]
gi|219956176|gb|ACL66560.1| DNA photolyase FAD-binding [Anaeromyxobacter dehalogenans 2CP-1]
Length = 486
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 113/392 (28%), Positives = 163/392 (41%), Gaps = 57/392 (14%)
Query: 15 RIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGA 74
RIR L L +R V++WM +R R N AL A + + PV V L + A
Sbjct: 7 RIRALNAAPLRPERAVVLHWMTSARRTRSNPALERAAELGRELGRPVLVVEPLRCGYPHA 66
Query: 75 KARQLGFMLRGLR-----LLQRNIEETFQILFFLFQGEAEDNIPNFV-RECGASLLVTDF 128
R F+L G+R L R + + GE + + R C +++ DF
Sbjct: 67 SDRLHAFLLEGMRDNAAALAGRAL---YHPWVERRAGEGDGLLEALAARAC--AVIADDF 121
Query: 129 SPLREIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYL 188
P + R+ V + VDA VVP +A + +A R + + LP +L
Sbjct: 122 -PTGFPAQAIHAAAARLD--VRLEAVDASCVVPFRLAGKDFP-TAHAYRRHLQRTLPTWL 177
Query: 189 IDYPMLEQ------------PIE---KWTGTRQS-IDWDSIIAAVLRKGAEVPEIGWCES 232
P + P+E +W R + +D + +AA L VP G
Sbjct: 178 DRLPAEDPLARAPPPWGASVPVEIRRRWPAARGAELDRPAALAAGLPIDHGVPPAG--RG 235
Query: 233 GEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISA--------- 283
G AA L FL + L Y RN P +PR SGLSP+LHFG +S+
Sbjct: 236 GSVAARRRLAA----FLREGLDGYAERRNAPDEPRGSSGLSPWLHFGHVSSFEVLRAVLR 291
Query: 284 ------QRCALEARKARK----LCPEAIDTFLEELIVRRELADNFCFYQPNYDSLKGAWE 333
A R AR L P A + FL++L+ RELA C + P + +
Sbjct: 292 REGWTPPAVATPPRGARAGWWALSPSA-EAFLDQLLTWRELAFVTCAHVPEHRAYASLPA 350
Query: 334 WARKSLKDHASDKREHIYTKEQFEKAQTADPV 365
WAR +L HA+D R +Y + E A+T DP+
Sbjct: 351 WARATLARHAADPRPAVYARAALEAAETHDPL 382
>gi|283779092|ref|YP_003369847.1| DNA photolyase FAD-binding protein [Pirellula staleyi DSM 6068]
gi|283437545|gb|ADB15987.1| DNA photolyase FAD-binding protein [Pirellula staleyi DSM 6068]
Length = 824
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 105/368 (28%), Positives = 169/368 (45%), Gaps = 42/368 (11%)
Query: 15 RIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGA 74
R+RV+ + V+YW+ R +N AL A++ AN+ +P+ V L +++ A
Sbjct: 23 RVRVVTDRPIASSGKLVLYWLRTAMRAHENPALDLAIEFANQLALPLVVYQGLSEKYPYA 82
Query: 75 KARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGA--SLLVTDFSPLR 132
RQ F++ G+ L + E + + +L E ++ ++++ A ++++T+ P+
Sbjct: 83 SDRQHRFVIEGMINLASEMRE--RGIHYLPHIERGEHREPYLQKLAAQAAVVITEEMPVD 140
Query: 133 EIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLE--YSAKTLRGKI---NKLLP-- 185
+RR + V + VD V P+ + + ++ + G N LP
Sbjct: 141 PLRRWTSLASRHTTGPV--YTVDTACVWPMPRMPQSYDRAFAFRDAAGDYYDKNLTLPWD 198
Query: 186 -EYLIDYPMLE-QPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGED--AAMEVL 241
E L P E IE + Q+I IIAA CE AA E
Sbjct: 199 EEQLTSRPTPELADIEPTPISPQNIA--EIIAA-------------CEIDHTLAAAAETR 243
Query: 242 KGSKDG------FLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARK 295
GS G F L+NY RN+PL P S +S YLH+G +S R A R+A
Sbjct: 244 GGSVAGYERWNQFRQTGLRNYAARRNDPLHP-TTSRMSAYLHYGMVSPLRIA---REASA 299
Query: 296 LCPEAIDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQ 355
+ +L+EL+V RELA N+C++ D L WA+++L HA D+R +IY+ EQ
Sbjct: 300 QGGAGAEKYLDELLVWRELAYNYCYFHRAIDRLSTLPRWAQETLAQHAGDRRPNIYSWEQ 359
Query: 356 FEKAQTAD 363
+ QT D
Sbjct: 360 LARGQTDD 367
>gi|197123524|ref|YP_002135475.1| DNA photolyase FAD-binding [Anaeromyxobacter sp. K]
gi|196173373|gb|ACG74346.1| DNA photolyase FAD-binding [Anaeromyxobacter sp. K]
Length = 486
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 113/392 (28%), Positives = 162/392 (41%), Gaps = 57/392 (14%)
Query: 15 RIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGA 74
RIR L L +R V++WM +R R N AL A + + PV V L + A
Sbjct: 7 RIRALNAAPLRPERAVVLHWMTSARRTRSNPALERAAELGRELGRPVLVLEPLRCGYPHA 66
Query: 75 KARQLGFMLRGLR-----LLQRNIEETFQILFFLFQGEAEDNIPNFV-RECGASLLVTDF 128
R F+L G+R L R + + GE + + R C +++ DF
Sbjct: 67 SDRLHTFLLEGMRDNAAALAGRAL---YHPWVERRAGEGDGLLEALAARAC--AVIADDF 121
Query: 129 SPLREIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYL 188
P + R+ V + VDA VVP +A + +A R + + LP +L
Sbjct: 122 -PTGFPAQAIHAAAARLD--VRLEAVDASCVVPFRLAGKDFP-TAHAYRRHLQRTLPAWL 177
Query: 189 IDYPMLEQ------------PIE---KWTGTRQS-IDWDSIIAAVLRKGAEVPEIGWCES 232
P + P+E +W R + +D + +AA L VP G
Sbjct: 178 DRLPAEDPLARAPPPWGASVPVEIRRRWPAARGAELDRPAALAAGLPIDHGVPPAG--RG 235
Query: 233 GEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISA--------- 283
G AA L FL L Y RN P +PR SGLSP+LHFG +S+
Sbjct: 236 GSVAARRRLAA----FLRDGLDGYSERRNAPDEPRGSSGLSPWLHFGHVSSFEVLRAVLR 291
Query: 284 ------QRCALEARKARK----LCPEAIDTFLEELIVRRELADNFCFYQPNYDSLKGAWE 333
A R AR L P A + FL++L+ RELA C + P++ +
Sbjct: 292 REGWTPPAVAAPPRGARAGWWALSPSA-EAFLDQLLTWRELAFVTCAHVPDHRAYASLPA 350
Query: 334 WARKSLKDHASDKREHIYTKEQFEKAQTADPV 365
WAR +L HA+D R Y + E A+T DP+
Sbjct: 351 WARATLARHAADPRPASYGRAALEAAETHDPL 382
>gi|170595219|ref|XP_001902292.1| FAD binding domain of DNA photolyase family protein [Brugia malayi]
gi|158590106|gb|EDP28860.1| FAD binding domain of DNA photolyase family protein [Brugia malayi]
Length = 442
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 79/257 (30%), Positives = 127/257 (49%), Gaps = 29/257 (11%)
Query: 121 ASLLVTDFSPLREIRRCKDKICNR-VSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGK 179
A ++ D + LRE R + + ++ V +V+ + +PV K Y+A T+R
Sbjct: 68 ACEVIIDAAYLREDRNFDENLNDKLVMKCRRFTKVEGNVTIPVATLCNKPAYNANTIRKV 127
Query: 180 INKLLPEYLIDYPMLEQPIEKWTGTRQSI--DWDSII----------AAVLRKGAEVPEI 227
L ++L+ EKW T + W+SI+ + R +
Sbjct: 128 AWHFLDDFLL---------EKWNVTPKIYCESWESIVEYNLECMDISSECTRAYNDCRTS 178
Query: 228 GWCESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCA 287
+ GEDAA++VL D F+ L Y +RN P + S LSPY+HFG ++
Sbjct: 179 SVLKGGEDAALQVL----DYFIVNNLNTYDEERNIPNSGKQ-SLLSPYIHFGMLNPIMIV 233
Query: 288 LEARKARKLCPEAIDTFLEELIVRRELADNFCFY-QPNYDSLKGAWEWARKSLKDHASDK 346
++ +++ + A D FLEEL+VRRELA NF Y + YD+ EWA+K++ +H DK
Sbjct: 234 VKVKQS-EAPKSAKDAFLEELVVRRELAHNFVXYXRDTYDTFDCLPEWAKKAMDEHRHDK 292
Query: 347 REHIYTKEQFEKAQTAD 363
RE+IY+ ++ E+ T D
Sbjct: 293 REYIYSYKELEEGCTHD 309
>gi|47834993|gb|AAT39131.1| type II CPD DNA photolyase [Zea mays]
Length = 118
Score = 101 bits (252), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 43/56 (76%), Positives = 49/56 (87%)
Query: 310 VRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPV 365
VRRELADNFC+YQP YDSL GAWEWARK+L DH DKREHIYT+EQ E A+T+DP+
Sbjct: 1 VRRELADNFCYYQPQYDSLAGAWEWARKTLTDHTGDKREHIYTREQLENAKTSDPL 56
>gi|262198146|ref|YP_003269355.1| DNA photolyase FAD-binding protein [Haliangium ochraceum DSM 14365]
gi|262081493|gb|ACY17462.1| DNA photolyase FAD-binding protein [Haliangium ochraceum DSM 14365]
Length = 496
Score = 101 bits (251), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 107/398 (26%), Positives = 165/398 (41%), Gaps = 46/398 (11%)
Query: 1 MASLTPPSTAVQPGRIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVP 60
MA+ PP A+ R+R + + + R V+YWM +R R N+AL A+ + P
Sbjct: 1 MANSLPPVPAL---RVRAVGDAPVHESRRFVLYWMIAARRTRYNFALERALAWSRALGKP 57
Query: 61 VAVAFNLFDQFLGAKARQLGFMLRGLRLLQRNIEETFQILF-FLFQGEAEDNIPNFVREC 119
+ V L + A R F++ G+ +T + +L
Sbjct: 58 LVVLEALRCDYPWASERLHRFVVDGMSDQSAAFADTPVAYYPYLEPRPGAGRGLLAALAA 117
Query: 120 GASLLVTDFSPLREIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGK 179
A ++VTD P + R S V + VD + + P+ A+E++ +A + R
Sbjct: 118 HACVVVTDEFPCFFLPRMVAAAAR--SLDVQVQAVDGNGLYPL-AATERVFTTAASFRRH 174
Query: 180 INKLLPEYLIDYPMLEQ-----PIEKWTGTRQSIDWDSIIAAVLRKGAE----------- 223
+ K LP +L D PM E P + +I A++ R GA
Sbjct: 175 LQKELPAHLGDMPMAEPLAHAPPRDAAHALPAAIRKRWPPASLGRPGASDALLSALRFDR 234
Query: 224 VPEIGWCESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISA 283
E G AA E L + F+ L Y RN P P S LSPYLHFG ISA
Sbjct: 235 AVEAAPVRGGARAAGETL----ERFVRAGLPRYLEARNQPADP-VTSQLSPYLHFGHISA 289
Query: 284 QRC-----ALEARKARKLCPEA-------------IDTFLEELIVRRELADNFCFYQPNY 325
A + ++ P A ++ FL+ELI RE+ N + +Y
Sbjct: 290 HEVFRRVMARDQWTPDRMAPRATGSREGFWGASSEVEGFLDELITWREIGYNMAAKRDDY 349
Query: 326 DSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTAD 363
D + WA+ +L++H D R H+Y ++FE+A+T D
Sbjct: 350 DRYESLPAWAQTTLEEHTGDPRPHLYELDEFEQARTHD 387
>gi|187234362|gb|ACD01433.1| DNA photolyase I [Chrysodeixis chalcites nucleopolyhedrovirus]
gi|187234370|gb|ACD01437.1| DNA photolyase I [Plusia acuta nucleopolyhedrovirus]
Length = 247
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 69/231 (29%), Positives = 107/231 (46%), Gaps = 28/231 (12%)
Query: 153 EVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQP-----IEKWTGTRQS 207
+VDAHNVVP W+ + + KI+ L L + ++ Q + + T S
Sbjct: 1 QVDAHNVVPCWLTFIADRHDYDEFKSKIDAELENLLTPFSLVIQHPYKSVVSIESSTNTS 60
Query: 208 IDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPR 267
IDW +++++ V I W E+G +AA+ L F+ + NY +NP+ +
Sbjct: 61 IDWSNLLSS-RNVDHSVKRIKWTEAGYNAAILRLAT----FIQCYIYNYKNSIHNPVSSK 115
Query: 268 ALSGLSPYLHFGQISAQRCALEARKA-------------RKLCPEAIDTFLEELIVRREL 314
S LSP+ HFG ISAQR R RKL I+ F+E + RRE
Sbjct: 116 Q-SDLSPFFHFGFISAQRVIYHLRFCVTKKSVLQKTVFIRKL-KNNIEKFIENCLYRREF 173
Query: 315 ADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPV 365
ADNFC++ NY + A ++ + H R + Y+ + E +QT D +
Sbjct: 174 ADNFCYFNLNYITFNAASPQIKRYIAKHL---RYYTYSLNELEYSQTHDNI 221
>gi|301057335|ref|ZP_07198453.1| FAD binding domain of DNA photolyase [delta proteobacterium NaphS2]
gi|300448565|gb|EFK12212.1| FAD binding domain of DNA photolyase [delta proteobacterium NaphS2]
Length = 499
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 103/395 (26%), Positives = 170/395 (43%), Gaps = 54/395 (13%)
Query: 10 AVQPGRIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFD 69
AV RIR ++ + +YWM +RV N++L AV+ A K N P+ + L
Sbjct: 4 AVSESRIRSANDAPINSRGHFALYWMTACRRVHWNYSLDRAVEWALKLNKPLVILEALRT 63
Query: 70 QFLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQG--EAEDNIPNFVRECGASLLVTD 127
+ A R GF++ G+R + +++ +L++ + E D A+++VTD
Sbjct: 64 GYPWASDRFHGFIMAGMRDNRAALKDR-NVLYYPYVAPDENADKGLLEALALKAAIVVTD 122
Query: 128 FSPL----REIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKL 183
P IR + + +V + +VD + ++P+ ++++ +A + R + K
Sbjct: 123 DFPAFFLPNMIRSAAETL------TVRLEQVDGNGILPI-ADTDRIFTTAYSFRRFLQKN 175
Query: 184 LPEYLIDYP----------------MLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEI 227
L +L P ++E+ +KW + D + + I
Sbjct: 176 LIPHLCAPPKASALKGRSLKNPSRSLVEEIQKKWPPAPLN---DLNATPLNLNPYPIDHI 232
Query: 228 GWCESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISA---- 283
GE A+ L+ K F+ L +Y RN P +P SGLSPYLHFG +S
Sbjct: 233 IPPVPGEGGAVRGLRMLKR-FIMSGLPHYADGRNQPDQP-VTSGLSPYLHFGHVSPHQVF 290
Query: 284 -----------QRCALEARKARKL----CPEAIDTFLEELIVRRELADNFCFYQPNYDSL 328
Q+ A + R+ E + FL++LI REL N C + YD
Sbjct: 291 HEIARNQGWQRQKSAEKKVDGRRAGWWGMDENAEAFLDQLITWRELGFNMCRHDEKYDRY 350
Query: 329 KGAWEWARKSLKDHASDKREHIYTKEQFEKAQTAD 363
+W R +L+ H DKR ++Y E FE AQT D
Sbjct: 351 ASLPQWVRDTLEAHEKDKRPYVYALEDFENAQTHD 385
>gi|189911853|ref|YP_001963408.1| deoxyribodipyrimidine photolyase [Leptospira biflexa serovar Patoc
strain 'Patoc 1 (Ames)']
gi|167776529|gb|ABZ94830.1| Deoxyribodipyrimidine photolyase [Leptospira biflexa serovar Patoc
strain 'Patoc 1 (Ames)']
Length = 523
Score = 98.2 bits (243), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 108/406 (26%), Positives = 181/406 (44%), Gaps = 61/406 (15%)
Query: 2 ASLTPPSTAVQPGRIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPV 61
+L+PP V+ RIRV + + ++ V+YWM +R N A HAV+ A + N +
Sbjct: 19 GNLSPPLIGVKSDRIRVCNEKPIQLEKSYVLYWMQAYRRFDANHAFNHAVNLAKELNKEL 78
Query: 62 AVAFNLFDQFLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVREC-- 119
V L + R F+L G+ Q +E +I ++ F ++ ++E
Sbjct: 79 IVYEGLRMDYPWNSERIHQFILEGMIENQTRADE-LEIKYWPFVETPKNLGKGLLKEISE 137
Query: 120 GASLLVTDFSPLREIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGK 179
AS++VTD P I +K+ ++ + +D ++++P + K +A+ LR
Sbjct: 138 NASVVVTDDFPCFIIPEQTEKLAKKI--HCQLLAIDGNSLIP-FSRFAKQASAARILRLW 194
Query: 180 INKLLPEYLIDYPMLE----------------QPIEKWTGTRQSIDWDSIIAAVLRKGAE 223
I+K L ++P + P E+ G +SI D I+ + +
Sbjct: 195 IHKELNR---EFPKMNTIIWKNEDLSKLNGKTNPPER-IGLPKSI--DGILKLIPFQNIV 248
Query: 224 VPEIGWCESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPR--ALSGLSPYLHFGQI 281
P G + G + A+ +L + FL +L Y T R+ P +P A SGLSPYLHFG I
Sbjct: 249 SPVKG-VKGGRNEALRLL----NDFLKHKLDLYLTKRSEPNRPELTATSGLSPYLHFGWI 303
Query: 282 SAQR---CALEARKARKLCPE------------------AIDTFLEELIVRRELADNFCF 320
L+ K PE + + FL+ELI R++ + F
Sbjct: 304 GLDEIFVAVLKHSAKGKWNPERMSHEKPGDREHFYSPSVSANHFLDELITWRDIG--YLF 361
Query: 321 Y---QPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTAD 363
+ +P +L +W + + + H +D RE++YT EQFE A+T D
Sbjct: 362 FWKDKPKQINLSHLPDWVKTNFQKHQNDHREYVYTLEQFESAKTHD 407
>gi|374725105|gb|EHR77185.1| DNA deoxyribodipyrimidine photolyase [uncultured marine group II
euryarchaeote]
Length = 498
Score = 95.9 bits (237), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 101/408 (24%), Positives = 169/408 (41%), Gaps = 78/408 (19%)
Query: 15 RIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGA 74
R+ L ++++ V+YWM ++R N AL +A A + NVP+ V + + A
Sbjct: 8 RVSTLNTNPVNEQGKYVLYWMIANRRYHSNAALEYAAHMAKQQNVPLLVLEEISTRHKFA 67
Query: 75 KARQLGFMLRGL----RLLQRN-------IEETFQILFFLFQGEAEDNIPNFVRECGASL 123
R FM++G+ R+ + N +E AED A +
Sbjct: 68 NDRITSFMVQGMLDNIRVFRDNKIRYIPWVETPISGQIGKLHELAED----------AVM 117
Query: 124 LVTDFSPLREIRRCKDKICNRVSDSVTIHEVDAHNVVPV-WVASEKLEYSAKTLRGKINK 182
+++D P R+ + +S V VD++ V P+ W +E+ +A R +++
Sbjct: 118 VISDDFPTYFPRKAIESASKSLS--VRFLAVDSNGVFPMSW--TERAYPTAHGFRRFVHE 173
Query: 183 LLPEYLIDYPMLEQPIEK----WTGTRQ--SIDWDSIIAA-----VLRKGAE-------- 223
E + +P PI W + +I DS + + R G +
Sbjct: 174 RFVECMETWPS-HNPIPADHTLWMEDNEFNTIVQDSKLGVTPFEWLWRAGEQGSSGRDAL 232
Query: 224 --------VPEIGWCESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPY 275
VP + + G D A+ +L+ FL+ RL Y DRN P A SGLSP+
Sbjct: 233 STLDIDHSVPPVANVKGGRDTAVRMLRE----FLSNRLSRYHEDRNQVKNP-ATSGLSPW 287
Query: 276 LHFGQISAQRCALE------------------ARKARKLCPEAIDTFLEELIVRRELADN 317
HFG +S AR PE ++ FL+++I REL N
Sbjct: 288 FHFGHLSTVEVVQRILDSNGWMPDLINAPRRGARAGWWGLPEPVEAFLDQIITWRELGFN 347
Query: 318 FCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPV 365
++ P ++ +WA+++L +HA D+R YT +Q +A T D +
Sbjct: 348 NAYHNPEHNHFTSLPDWAKRTLSEHADDERT-TYTLDQIREADTHDEI 394
>gi|421609017|ref|ZP_16050222.1| deoxyribodipyrimidine photolyase [Rhodopirellula baltica SH28]
gi|408500213|gb|EKK04667.1| deoxyribodipyrimidine photolyase [Rhodopirellula baltica SH28]
Length = 507
Score = 95.5 bits (236), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 102/382 (26%), Positives = 178/382 (46%), Gaps = 54/382 (14%)
Query: 31 VVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQ 90
VVYWM +R+ N+AL HA+D+A + P+ + L ++ A R F++ G+R
Sbjct: 25 VVYWMIAQRRLHWNFALQHAIDRALEFEKPLLIFEPLRVRYQWASDRIHRFIIEGMRDNA 84
Query: 91 RNIEETFQILFFLFQGEAEDNIPNFVREC-GASLLVTDFSPLREIRRCKDKICNRVSDSV 149
E + + + + P R A +VTD P + D + +++ +
Sbjct: 85 TEAESLPVVYYPYVEPKPGVGSPLLHRLAKHACTVVTDEYPCFFLPHMIDAVKDKLPARL 144
Query: 150 TIHEVDAHNVVPVWVASEKLEYSAKTLRGKINK-LLPEYLIDYPMLEQPIEKWTGTRQSI 208
+ +D++ V+P+ A+EK A + R + K +LP ++ +L P+++ R ++
Sbjct: 145 EL--IDSNGVLPL-RAAEKTYTVAHSYRRFMQKNILPA--LEQLLLANPLDR-NSNRPAL 198
Query: 209 ---DWDSII--------AAVLRKG--AEVPEI----GWCESGEDAAMEVLKGSKDG---- 247
D +S+ + +L K AE+ ++ G E D ++ + + G
Sbjct: 199 PCPDGESMAERRKKLLPSKILSKWPVAELEKLLGQDGLSEIPIDHSVRPSQATPGGTAEA 258
Query: 248 ------FLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRC--------ALEARKA 293
FL K+L Y DRN+P + A +GLSP+LHFG ISA A +
Sbjct: 259 SRRWQEFLNKKLSRYNDDRNHPDE-HATTGLSPHLHFGHISAHEMVSSLLDHEGWSADQT 317
Query: 294 RKL---------CPEAIDTFLEELIVRRELADNFCFYQPN-YDSLKGAWEWARKSLKDHA 343
K E + L++L+ RE+ N+ F P+ YDSL+ +WA+K+L +
Sbjct: 318 SKPNGKNHGFWNVGENAEALLDQLLTWREIGFNWSFQNPDTYDSLESLPDWAQKTLNETR 377
Query: 344 SDKREHIYTKEQFEKAQTADPV 365
D+R H+YT +FE A+T D +
Sbjct: 378 DDERPHLYTLAEFENAETHDEI 399
>gi|1197525|gb|AAC43723.1| photolyase [Myxococcus xanthus DZF1]
gi|1589149|prf||2210323A photolyase
Length = 400
Score = 95.1 bits (235), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 77/235 (32%), Positives = 115/235 (48%), Gaps = 38/235 (16%)
Query: 149 VTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQPIEKWTGTRQ-- 206
V + VDA VVP+ + + + A TLR K+ KL PEYL D + + ++ R+
Sbjct: 62 VPLFAVDASCVVPMQRIATR-QIGAYTLRPKLKKLWPEYL-DRAVPNRAVKAAAAGRKLE 119
Query: 207 ----------------SIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLT 250
+ D+D +A + +G G A ++ L+ F+
Sbjct: 120 PDFATSDARESRESLDAFDFDHSVAPIQERG-----------GRKAGLDALQA----FVH 164
Query: 251 KRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIV 310
+RL+ Y RN+P R S LSP+ H+G + A A A +AR ++ FLEEL+V
Sbjct: 165 QRLEGYDEGRNDPGLARQ-SNLSPFFHWGNLFAGEAARAAIRARGAQDASVQGFLEELLV 223
Query: 311 RRELADNFCFYQPNYDSLKGAW--EWARKSLKDHASDKREHIYTKEQFEKAQTAD 363
RREL N+CF+ P L A WA+++L H D REH Y+ +Q E A+TAD
Sbjct: 224 RRELGFNYCFHTPGPQQLSVASLPPWAKETLTRHQKDAREHRYSLKQLETARTAD 278
>gi|187234366|gb|ACD01435.1| DNA photolyase I [Pseudoplusia includens nucleopolyhedrovirus]
Length = 243
Score = 95.1 bits (235), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 71/228 (31%), Positives = 108/228 (47%), Gaps = 30/228 (13%)
Query: 153 EVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQ-------PIEKWTGTR 205
+VDAHNVVP W+ S + + T R KIN+ L YL +P++ + P+E T T
Sbjct: 1 QVDAHNVVPCWLVSNQPIFD--TFRDKINEQLQNYLKPFPIVVKHPHKSVVPVESSTNT- 57
Query: 206 QSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLK 265
IDW ++I + + + W ++G AM L F+ L Y N
Sbjct: 58 -YIDWYALITS-RNIDQSIDTVKWTKAGYRPAMLRLAS----FIEFSLYMYNNRLENAFS 111
Query: 266 PRALSGLSPYLHFGQISAQRCA-------LEARK---ARKLCPEAIDTFLEELIVRRELA 315
S LSP+ HFG +S QR L+ R ++ + ++ FLE L+ RRE A
Sbjct: 112 INQ-SDLSPFFHFGFLSTQRVIYYLTFHILKTRGRYGSKGKLKKNVERFLENLLYRREYA 170
Query: 316 DNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTAD 363
DN+C + NY+ K E R + H + ++Y+ E+ E +QT D
Sbjct: 171 DNYCLFNANYNKFKILVEHNRYYFEHHTT---VYLYSLEELEFSQTYD 215
>gi|383455823|ref|YP_005369812.1| deoxyribodipyrimidine photolyase [Corallococcus coralloides DSM
2259]
gi|380733831|gb|AFE09833.1| deoxyribodipyrimidine photolyase [Corallococcus coralloides DSM
2259]
Length = 470
Score = 94.7 bits (234), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 96/346 (27%), Positives = 151/346 (43%), Gaps = 27/346 (7%)
Query: 31 VVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQ 90
V+YW + R +N AL A+ N +PV V + + A R + L G+ +
Sbjct: 33 VLYWCMVNHRWEENHALDAAIALGNHLGLPVVVYQAIRPDYPYASERLHAWALEGMADMA 92
Query: 91 RNIEETFQILFFLFQGEAEDNIPNFVRECG--ASLLVTDFSPLREIRRCKDKICNRVSDS 148
+ + +++ P G A+ +V+D P I +
Sbjct: 93 KGCTARGLPYWLELPRTKKEHKPRLA-SLGRRAAAVVSDLFPTYIIPGHLRGAAKALR-- 149
Query: 149 VTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQPIEKWTGTRQSI 208
V + VDA VVP+ + A LR K+ KL PEYL L + +G +
Sbjct: 150 VPLIAVDASCVVPM-QRIPAAQVGAYALRPKLRKLWPEYLER--TLPRRKVHVSGAKLQP 206
Query: 209 DWDSIIAAVLRKGAEVPEIGWC------ESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNN 262
D++ A R + + G A ++ L D FL +RL+ Y T RN+
Sbjct: 207 DFELSDAVQARAALDTFALDHSVKPLSERGGRKAGLKAL----DAFLDERLEGYDTGRND 262
Query: 263 PLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVRRELADNFCFYQ 322
P + S LSP+ H+G + A A A+ A+ +F+EEL+VRREL N+CF+
Sbjct: 263 PGLGQQ-SNLSPWFHWGNLFPGEAARAAIAAKGKDHPAVQSFVEELLVRRELGFNYCFHT 321
Query: 323 P-----NYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTAD 363
P + DSL WAR++L H D R H+Y+ E+ ++ +T D
Sbjct: 322 PGPKQLSVDSLP---PWARETLSRHRKDPRPHLYSFEELDQGRTQD 364
>gi|156340369|ref|XP_001620432.1| hypothetical protein NEMVEDRAFT_v1g223118 [Nematostella vectensis]
gi|156205346|gb|EDO28332.1| predicted protein [Nematostella vectensis]
Length = 366
Score = 94.4 bits (233), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 45/85 (52%), Positives = 60/85 (70%), Gaps = 1/85 (1%)
Query: 280 QISAQRCALEARKARKLCPEAIDTFLEELIVRRELADNFCFYQ-PNYDSLKGAWEWARKS 338
QI QR L R R E++++F+EE I+RREL+DNFC+Y YDS++G EWARK+
Sbjct: 217 QILPQRAILRVRDFRSKFRESVESFIEECIIRRELSDNFCYYNNEKYDSIEGTNEWARKT 276
Query: 339 LKDHASDKREHIYTKEQFEKAQTAD 363
L DHA DKRE++Y + + EKAQT D
Sbjct: 277 LNDHAKDKREYLYARGKLEKAQTHD 301
Score = 84.7 bits (208), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 46/115 (40%), Positives = 68/115 (59%), Gaps = 1/115 (0%)
Query: 78 QLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRC 137
Q G ++ + QR ++E +I F L G+ +P FV+ G +V DF PLR +
Sbjct: 67 QCGGVVYWMWRDQRELKE-LEISFHLLLGDPGKVLPEFVKTAGIGGIVVDFCPLRLPTQW 125
Query: 138 KDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYP 192
+ + V V I +VDAHN+VP W AS KLEY A+T+R KI+K+L E+L ++P
Sbjct: 126 VNDVVKAVPKDVPICQVDAHNIVPCWHASPKLEYGARTIRPKIHKVLTEFLTEFP 180
>gi|255671641|gb|ACU26402.1| deoxyribodipyrimidine photolyase [uncultured bacterium
HF186_25m_30B18]
Length = 487
Score = 94.4 bits (233), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 94/402 (23%), Positives = 168/402 (41%), Gaps = 67/402 (16%)
Query: 8 STAVQPGRIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNL 67
++ + R++ +++ + +R V+YWM +R DN+ L HA+ A VP+ V L
Sbjct: 2 TSPIPQSRVQTIQRAPIRPERRFVLYWMVSARRTTDNFGLQHALYHAETLGVPLVVFEPL 61
Query: 68 FDQFLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGAS---LL 124
+ A R F+L G+R + + + + E E + + E A+ ++
Sbjct: 62 RVGYRWASERFHAFVLEGMRDNAEAFDGVAGVTYLPYV-EPEAGAGSGLLEALAAQACMV 120
Query: 125 VTDFSPLREIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLL 184
V+D P + R DK R+ V + VD++ ++P++ A + +A + R ++K +
Sbjct: 121 VSDHFPCFFVPRMVDKAAKRLDVQVDV--VDSNGILPLFAAPREFT-TAHSFRRHVHKNV 177
Query: 185 PEYLIDYPMLE------------------QPIEKWTG------TRQSIDWDSIIAAVLRK 220
E++ + P E P +TG T ++ D + V +
Sbjct: 178 LEHVAEMPEAEPLASAELPPAPARDALNIAPWAAYTGEGALNVTLSALPIDHSVTPVSTR 237
Query: 221 GAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQ 280
G G A L D FL ++L Y N ++ +GLSP+LHFG
Sbjct: 238 G-----------GRQEAWRRL----DAFLGRQLNAY--GERNQVERDIGTGLSPHLHFGH 280
Query: 281 ISAQRCALEARKARKLCP------------------EAIDTFLEELIVRRELADNFCFYQ 322
I A E + + P E ++FL++++ REL FC +
Sbjct: 281 IGAHTILRELIERERWSPDQVAPKPTGSRAGWWGMSEGAESFLDQVLTWRELGYTFCHVR 340
Query: 323 -PNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTAD 363
+YD + WA +L+ HA D+R +Y E + +T D
Sbjct: 341 WRDYDRFESLPPWALTTLEAHARDRRPVLYDFEALDAGKTHD 382
>gi|402581048|gb|EJW74997.1| hypothetical protein WUBG_14096, partial [Wuchereria bancrofti]
Length = 182
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 54/134 (40%), Positives = 79/134 (58%), Gaps = 7/134 (5%)
Query: 231 ESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEA 290
E GEDAA+ VL + F+ L Y +RN P + S LSPY+HFG ++ ++
Sbjct: 29 EGGEDAALRVL----NYFIANNLNTYDKERNIPNSGKQ-SLLSPYIHFGMLNPIMIVVKV 83
Query: 291 RKARKLCPEAIDTFLEELIVRRELADNFCFY-QPNYDSLKGAWEWARKSLKDHASDKREH 349
+++ A D FLEEL+VRRELA NF +Y + YD+ EWA+K++ +H DKRE+
Sbjct: 84 KQSEAP-KSAKDAFLEELVVRRELAHNFVYYYRDTYDTFDCLPEWAKKAMDEHRHDKREY 142
Query: 350 IYTKEQFEKAQTAD 363
IY ++ E+ T D
Sbjct: 143 IYGYKELEEGCTHD 156
>gi|32475397|ref|NP_868391.1| deoxyribodipyrimidine photolyase [Rhodopirellula baltica SH 1]
gi|32445938|emb|CAD78669.1| deoxyribodipyrimidine photolyase [Rhodopirellula baltica SH 1]
Length = 507
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 100/381 (26%), Positives = 175/381 (45%), Gaps = 52/381 (13%)
Query: 31 VVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQ 90
VVYW+ +R+ N+AL HA+D+A + P+ + L ++ A R F++ G+R
Sbjct: 25 VVYWLIAQRRLHWNFALQHAIDRALEFEKPLLIFEPLRVRYQWASDRIHRFIIEGMRDNA 84
Query: 91 RNIEETFQILFFLFQGEAEDNIPNFVREC-GASLLVTDFSPLREIRRCKDKICNRVSDSV 149
E + + + + P R A +VTD P + D + +++ +
Sbjct: 85 AEAESLPVVYYPYVEPKPGVGSPLLHRLAKHACTVVTDEYPCFFLPHMIDAVKDKLPARL 144
Query: 150 TIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQPIEKWTGTRQSI- 208
+ +D++ V+P+ A+EK A + R + K + L P L P+++ R ++
Sbjct: 145 EL--IDSNGVLPL-RAAEKTYTVAHSYRRFMQKNILPALEQLP-LANPLDR-NSNRPALP 199
Query: 209 --DWDSII--------AAVLRK--GAEVPEI----GWCESGEDAAMEVLKGSKDG----- 247
D +S+ + +L K A++ ++ G E D ++ + + G
Sbjct: 200 CPDGESMAERRKKLLPSKILSKWPAADLEKLLGQDGLSEIPIDHSVRPSQATPGGTVEAT 259
Query: 248 -----FLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRC--------ALEARKAR 294
FL K+L Y DRN+P + A +GLSP+LHFG ISA A +
Sbjct: 260 RRWQEFLNKKLSRYNDDRNHPDE-HATTGLSPHLHFGHISAHEMVSSILEHEGWSADQTS 318
Query: 295 KL---------CPEAIDTFLEELIVRRELADNFCFYQPN-YDSLKGAWEWARKSLKDHAS 344
K E + L++L+ RE+ N+ F P+ YDSL+ +WA+K+L +
Sbjct: 319 KPNGKNHSFWNVGENAEALLDQLLTWREIGFNWSFQNPDTYDSLESLPDWAQKTLNETRD 378
Query: 345 DKREHIYTKEQFEKAQTADPV 365
D+R H+YT +FE A+T D +
Sbjct: 379 DERPHLYTLAEFENAETHDEI 399
>gi|359689450|ref|ZP_09259451.1| deoxyribodipyrimidine photolyase [Leptospira licerasiae serovar
Varillal str. MMD0835]
gi|418749894|ref|ZP_13306182.1| putative deoxyribodipyrimidine photo-lyase [Leptospira licerasiae
str. MMD4847]
gi|418759280|ref|ZP_13315460.1| putative deoxyribodipyrimidine photo-lyase [Leptospira licerasiae
serovar Varillal str. VAR 010]
gi|384113771|gb|EIE00036.1| putative deoxyribodipyrimidine photo-lyase [Leptospira licerasiae
serovar Varillal str. VAR 010]
gi|404274779|gb|EJZ42097.1| putative deoxyribodipyrimidine photo-lyase [Leptospira licerasiae
str. MMD4847]
Length = 503
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 95/378 (25%), Positives = 173/378 (45%), Gaps = 57/378 (15%)
Query: 31 VVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQ 90
++YW+ ++R+ N +L +++ A K P+ + ++ + + R F+L G+
Sbjct: 25 ILYWIRANRRLAWNHSLDYSIHLAKKFKKPLVLFESVMMDYEWSSPRLHQFLLEGI---C 81
Query: 91 RNIEETFQILFFLF------QGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICNR 144
E+ ++ F + + + +P +++ AS+++TD P + +KI
Sbjct: 82 DTAEDASRVGFTYWPFVETKEHSLSEIVPGILKK--ASVVITDDFPCFFLPEHAEKIAEI 139
Query: 145 VSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKIN-------------KLLPEYLIDY 191
+ + + VD++++ P+ + Y A+ LR K++ K P+ +
Sbjct: 140 LDCKLLL--VDSNSITPLASYEKSFGY-ARVLRPKLHDRFVESYMHRSERKPSPKRIPSS 196
Query: 192 PMLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTK 251
L++P ++G ++ I S + + + V + G +++LK FL +
Sbjct: 197 DTLKKPDFLFSGKKEEIP--SYLQKMNSQFPNVLPVPGKIGGRKEGLDLLKK----FLKE 250
Query: 252 RLKNYPTDRNNPLKPRAL--SGLSPYLHFGQISAQR---CALEARKARKLCPEA------ 300
L Y +R+ P P S LSPYLHFG IS + LEA P+
Sbjct: 251 GLPYYSEERSEPRPPEKTKSSYLSPYLHFGMISVEEIVTAVLEADPKVNWTPDTLNHSYR 310
Query: 301 ------------IDTFLEELIVRRELADNFCFYQPNY-DSLKGAWEWARKSLKDHASDKR 347
I++FL+EL+ REL + +P++ L +WA+ SLK H+ DKR
Sbjct: 311 GKNEGFFHPNPNINSFLDELLTWRELGYLLFYKEPSFRKDLSILPDWAKLSLKVHSVDKR 370
Query: 348 EHIYTKEQFEKAQTADPV 365
E+IYTKEQFE A T DP+
Sbjct: 371 EYIYTKEQFENAMTHDPI 388
>gi|47834995|gb|AAT39132.1| type II CPD DNA photolyase [Picea glauca]
Length = 118
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 40/56 (71%), Positives = 49/56 (87%)
Query: 310 VRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPV 365
VRREL+DNFC+YQPNYDSL+GA+EWAR +L HASDKREHIYT+E+ EK +T D +
Sbjct: 1 VRRELSDNFCYYQPNYDSLQGAYEWARSTLLAHASDKREHIYTQEELEKGKTHDEL 56
>gi|315425180|dbj|BAJ46850.1| deoxyribodipyrimidine photo-lyase [Candidatus Caldiarchaeum
subterraneum]
gi|374852319|dbj|BAL55255.1| deoxyribodipyrimidine photo-lyase [uncultured crenarchaeote]
Length = 360
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 77/235 (32%), Positives = 117/235 (49%), Gaps = 27/235 (11%)
Query: 140 KICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQPIE 199
K + DSV + E D VVPV AS + E A+T+R K+ L +L P E P++
Sbjct: 33 KTLAKYCDSVKMVEGDV--VVPVKTASTRAEPYARTIRPKLLNKLDNFLETVP--EIPVK 88
Query: 200 KWTGTRQSIDWDSIIAAVLRKGAE--VPEIGWCE---------SGEDAAMEVLKGSKDGF 248
+ S D D I + + E + + G E GED A + L + F
Sbjct: 89 Q-----SSTDLD--IEGLRYETFEHLLKDFGSIEFVEPVKDVVGGEDEAHKRL----ETF 137
Query: 249 LTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEEL 308
+ +RL Y +R++P A S LSPYL +G IS + + R+ +++ + EL
Sbjct: 138 VGERLDRYAAERSDP-GSEACSELSPYLRYGMISPVQVLKRVFEYRRRGDVNVESLINEL 196
Query: 309 IVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTAD 363
+V RELA N Y P ++ +G EWAR++L HA D+RE +Y+ + E+A T D
Sbjct: 197 VVWRELARNGEVYNPFFEKYEGLPEWARETLSIHAGDRREQVYSMSELERADTHD 251
>gi|27262422|gb|AAN87492.1| Deoxyribodipyrimidine photolyase [Heliobacillus mobilis]
Length = 257
Score = 92.4 bits (228), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 56/134 (41%), Positives = 73/134 (54%), Gaps = 7/134 (5%)
Query: 231 ESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEA 290
+ G AA KG D F+ +L++Y RN+P +S LSPYLHFGQIS AL
Sbjct: 26 QGGASAA----KGLLDRFIATKLEHYGERRNDP-SLEYVSSLSPYLHFGQISPLYMALRV 80
Query: 291 RKARKLCPEAIDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHI 350
+++ ++D +LEELIVRREL+ NF Y YD EWAR++L H D RE
Sbjct: 81 QESN--IRASVDAYLEELIVRRELSINFVHYNLRYDEFTALPEWARQTLYTHRVDCREFN 138
Query: 351 YTKEQFEKAQTADP 364
Y + E T DP
Sbjct: 139 YGLSELENGLTDDP 152
>gi|187234368|gb|ACD01436.1| DNA photolyase [Pseudoplusia includens nucleopolyhedrovirus]
Length = 242
Score = 92.4 bits (228), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 70/226 (30%), Positives = 106/226 (46%), Gaps = 30/226 (13%)
Query: 155 DAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQ-------PIEKWTGTRQS 207
DAHNVVP W+ S + + T R KIN+ L YL +P++ + P+E T T
Sbjct: 2 DAHNVVPCWLVSNQPIFD--TFRDKINEQLQNYLKPFPIVVKHPHKSVVPVESSTNT--Y 57
Query: 208 IDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPR 267
IDW ++I + + + W ++G AM L F+ L Y N
Sbjct: 58 IDWYALITS-RNIDQSIDTVKWTKAGYRPAMLRLAS----FIEFSLYMYNNRLENAFSIN 112
Query: 268 ALSGLSPYLHFGQISAQRCA-------LEARK---ARKLCPEAIDTFLEELIVRRELADN 317
S LSP+ HFG +S QR L+ R ++ + ++ FLE L+ RRE ADN
Sbjct: 113 Q-SDLSPFFHFGFLSTQRVIYYLTFHILKTRGRYGSKGKLKKNVERFLENLLYRREYADN 171
Query: 318 FCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTAD 363
+C + NY+ K E R + H + ++Y+ E+ E +QT D
Sbjct: 172 YCLFNANYNKFKILVEHNRYYFEHHTT---VYLYSLEELEFSQTYD 214
>gi|395864000|gb|AFN80538.1| phytolase, partial [Pseudoplusia includens single
nucleopolyhedrovirus]
gi|395864002|gb|AFN80539.1| phytolase, partial [Pseudoplusia includens single
nucleopolyhedrovirus]
gi|395864004|gb|AFN80540.1| phytolase, partial [Pseudoplusia includens single
nucleopolyhedrovirus]
gi|395864006|gb|AFN80541.1| phytolase, partial [Pseudoplusia includens single
nucleopolyhedrovirus]
Length = 239
Score = 92.4 bits (228), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 70/226 (30%), Positives = 106/226 (46%), Gaps = 30/226 (13%)
Query: 155 DAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQ-------PIEKWTGTRQS 207
DAHNVVP W+ S + + T R KIN+ L YL +P++ + P+E T T
Sbjct: 1 DAHNVVPCWLVSNQPIFD--TFRDKINEQLQNYLKPFPIVVKHPHKSVVPVESSTNT--Y 56
Query: 208 IDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPR 267
IDW ++I + + + W ++G AM L F+ L Y N
Sbjct: 57 IDWYALITS-RNIDQSIDTVKWTKAGYRPAMLRLAS----FIEFSLYMYNNRLENAFSIN 111
Query: 268 ALSGLSPYLHFGQISAQRCA-------LEARK---ARKLCPEAIDTFLEELIVRRELADN 317
S LSP+ HFG +S QR L+ R ++ + ++ FLE L+ RRE ADN
Sbjct: 112 Q-SDLSPFFHFGFLSTQRVIYYLTFHILKTRGRYGSKGKLKKNVERFLENLLYRREYADN 170
Query: 318 FCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTAD 363
+C + NY+ K E R + H + ++Y+ E+ E +QT D
Sbjct: 171 YCLFNANYNKFKILVEHNRYYFEHHTT---VYLYSLEELEFSQTYD 213
>gi|32475803|ref|NP_868797.1| deoxyribodipyrimidine photolyase [Rhodopirellula baltica SH 1]
gi|32446346|emb|CAD76174.1| probable deoxyribodipyrimidine photolyase [Rhodopirellula baltica
SH 1]
Length = 837
Score = 92.0 bits (227), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 92/343 (26%), Positives = 156/343 (45%), Gaps = 25/343 (7%)
Query: 31 VVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQ 90
V+YWM R +N AL A+ A+K +P+ V L +++ A R F+++G R +Q
Sbjct: 30 VLYWMHNALRGHENPALDAAIWMAHKTGLPLLVYHGLSEKYPYASDRHHAFIMQGARDVQ 89
Query: 91 RNIEETFQILFFLFQ--GEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICNRVSDS 148
R ++ F + G+ ++ + R A++LV++ P+ I +++ + V+
Sbjct: 90 RELQARGITYAFHLERHGQRGPHLRDLCRR--AAVLVSEEMPVAPIACWVERLRSLVTTP 147
Query: 149 VTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQPIE----KWTGT 204
+ + VD +VP + + + A R I L E + P E P K+TG
Sbjct: 148 IML--VDTSCIVPS-QSVDAVPTRAFEFRRLIQSEL-ENRLSRPYEELPANLLPAKFTGP 203
Query: 205 R--QSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNN 262
ID + A L +V + M D F K L Y RN+
Sbjct: 204 LGFAPIDLQDVDLAELISQCKVDHSVGPVADTPGGMRAGYARWDRFREKSLTQYSRQRNH 263
Query: 263 PLKPRALSGLSPYLHFGQISAQRCALEARK--ARKLCPEAIDTFLEELIVRRELADNFCF 320
P P +S LS YLH+G IS R A EA ARK +++EL+V RE+ FC
Sbjct: 264 PDDPLGVSRLSGYLHYGMISPFRIAREAAAMGARK--------YVDELVVWREMVFRFCL 315
Query: 321 -YQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTA 362
+ + D++ +W+R++L+ HA D R+ + E + +++
Sbjct: 316 EHVEDLDTMAVLPKWSRETLEKHAEDSRDEVLDWETLARGKSS 358
>gi|395864010|gb|AFN80543.1| phytolase, partial [Pseudoplusia includens single
nucleopolyhedrovirus]
gi|395864012|gb|AFN80544.1| phytolase, partial [Pseudoplusia includens single
nucleopolyhedrovirus]
Length = 239
Score = 92.0 bits (227), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 70/226 (30%), Positives = 106/226 (46%), Gaps = 30/226 (13%)
Query: 155 DAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQ-------PIEKWTGTRQS 207
DAHNVVP W+ S + + T R KIN+ L YL +P++ + P+E T T
Sbjct: 1 DAHNVVPCWLVSNQPIFD--TFRDKINEQLQNYLKPFPIVVKHPHKSVVPVESSTNT--Y 56
Query: 208 IDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPR 267
IDW ++I + + + W ++G AM L F+ L Y N
Sbjct: 57 IDWYALITS-RNIDQYIDTVKWTKAGYRPAMLRLAS----FIEFSLYMYNNRLENAFSIN 111
Query: 268 ALSGLSPYLHFGQISAQRCA-------LEARK---ARKLCPEAIDTFLEELIVRRELADN 317
S LSP+ HFG +S QR L+ R ++ + ++ FLE L+ RRE ADN
Sbjct: 112 Q-SDLSPFFHFGFLSTQRVIYYLTFXILKTRGRYGSKGKLKKNVERFLENLLYRREYADN 170
Query: 318 FCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTAD 363
+C + NY+ K E R + H + ++Y+ E+ E +QT D
Sbjct: 171 YCLFNANYNKFKILVEHNRYYFEHHTT---VYLYSLEELEFSQTYD 213
>gi|395864008|gb|AFN80542.1| phytolase, partial [Pseudoplusia includens single
nucleopolyhedrovirus]
Length = 239
Score = 92.0 bits (227), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 70/226 (30%), Positives = 106/226 (46%), Gaps = 30/226 (13%)
Query: 155 DAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQ-------PIEKWTGTRQS 207
DAHNVVP W+ S + + T R KIN+ L YL +P++ + P+E T T
Sbjct: 1 DAHNVVPCWLVSNQPIFD--TFRDKINEQLQNYLKPFPIVVKHPHKSVVPVESSTNT--Y 56
Query: 208 IDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPR 267
IDW ++I + + + W ++G AM L F+ L Y N
Sbjct: 57 IDWYALITS-RNIDQYIDTVKWTKAGYRPAMLRLAS----FIEFSLYMYNNRLENAFSIN 111
Query: 268 ALSGLSPYLHFGQISAQRCA-------LEARK---ARKLCPEAIDTFLEELIVRRELADN 317
S LSP+ HFG +S QR L+ R ++ + ++ FLE L+ RRE ADN
Sbjct: 112 Q-SDLSPFFHFGFLSTQRVIYYLTFYILKTRGRYGSKGKLKKNVERFLENLLYRREYADN 170
Query: 318 FCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTAD 363
+C + NY+ K E R + H + ++Y+ E+ E +QT D
Sbjct: 171 YCLFNANYNKFKILVEHNRYYFEHHTT---VYLYSLEELEFSQTYD 213
>gi|296120560|ref|YP_003628338.1| DNA photolyase FAD-binding protein [Planctomyces limnophilus DSM
3776]
gi|296012900|gb|ADG66139.1| DNA photolyase FAD-binding protein [Planctomyces limnophilus DSM
3776]
Length = 843
Score = 91.3 bits (225), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 89/352 (25%), Positives = 154/352 (43%), Gaps = 37/352 (10%)
Query: 31 VVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQ 90
V+YWM R +N AL A+ A+ P+ V L + A R+ F+L+G R +
Sbjct: 47 VLYWMHHSLRGHENPALDVAIHLAHWLEKPLLVYQGLSEDHPYANDRRHTFILQGARDVH 106
Query: 91 RNIEETFQILFFLFQGEAEDNIPNF-VRECGASLLVTDFSPLREIRRCKDKICNRVSDSV 149
+ E +I L AED P+ A++LVTD P ++++ + +
Sbjct: 107 AELAEQ-KISSVLHVARAEDRGPHLKTLAAHAAVLVTDDVPTAPTIHWRNRLAASIKTPI 165
Query: 150 TIHEVDAHNVVP----------VWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQPIE 199
V+ +VP + E + KT + +L +P+ ++P
Sbjct: 166 VC--VNGACIVPPQLVKRAFDRAFAYREATAWLYKTRNTRPWPVLRYAGKPFPLDQRPF- 222
Query: 200 KWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDG------FLTKRL 253
QS+D A L +++ + + GS+ G F + L
Sbjct: 223 ------QSVDLQQTSIADLLAISQI------DHSVGPVQHTVGGSQAGYTRWENFKKQGL 270
Query: 254 KNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVRRE 313
+ Y RN+ LK +S +S YLH+G +S R ++ + + +L+EL++ RE
Sbjct: 271 RRYADQRNDALK-DGVSRMSAYLHYGMVSPFTL---VRDCFEVGGASAEKYLDELLIWRE 326
Query: 314 LADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPV 365
LA FC Y+ ++++L WAR++LK +D R +Y +E +AQT DP+
Sbjct: 327 LAWCFCHYRTDHEALSALPTWARQALKAGEADTRPALYDEETLARAQTHDPL 378
>gi|442771801|gb|AGC72477.1| deoxyribodipyrimidine photolyase, type II [uncultured bacterium
A1Q1_fos_499]
Length = 485
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 94/371 (25%), Positives = 156/371 (42%), Gaps = 45/371 (12%)
Query: 31 VVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQ 90
V+YWM +R+ N+AL A+ A + P+ V L + A R F+L G+
Sbjct: 12 VLYWMTAQRRLAWNYALDRAIAWATELGKPLVVLEALRCDYRWANDRIHRFVLEGMAENA 71
Query: 91 RNIEETFQILFFLFQGEAEDNIPNFVRECG--ASLLVTDFSPLREIRRCKDKICNRVSDS 148
R ++L+ + +R A+L+VTD P + R D +V
Sbjct: 72 RRATGK-RLLYLPYVEPTPGAGKGLLRALSQRAALIVTDDFPCFFLPRMLDAAARQVE-- 128
Query: 149 VTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPM------LEQPIEKWT 202
+ VD + ++P+ ++ +A R + + LP +L P L+ P K
Sbjct: 129 CRLESVDGNGLLPL-SETDAASPTAYAFRRILQRKLPAFLDSAPAAAPVDRLDLPALKKL 187
Query: 203 GTRQ---SIDW--DSIIAAVLRKGAEVP-----EIGWCESGEDAAMEVLKGSKDGFLTKR 252
++ S DW D+++A + A +P G G AA E FL ++
Sbjct: 188 SVKEGDRSWDWATDTLLAGDEKALAGLPIDHSVAPGLARGGSQAAEERWSS----FLYRK 243
Query: 253 LKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAI----------- 301
L Y +RN P + A SGLS YLHFG +S + + + PE +
Sbjct: 244 LLLYAENRNQPDEDGA-SGLSSYLHFGHLSVHQVLHDLAAVERWSPEDVAAGASGARTGW 302
Query: 302 -------DTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKE 354
+ FL++++ RE+ +FC ++ +YD WA +L HA+D R Y +
Sbjct: 303 WRMSPSAEAFLDQVVTWREVGYHFCHHRADYDRFSSLPPWALATLAKHATDLRSPRYELD 362
Query: 355 QFEKAQTADPV 365
A+T DP+
Sbjct: 363 DLAAARTYDPL 373
>gi|283778509|ref|YP_003369264.1| DNA photolyase FAD-binding protein [Pirellula staleyi DSM 6068]
gi|283436962|gb|ADB15404.1| DNA photolyase FAD-binding protein [Pirellula staleyi DSM 6068]
Length = 502
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 104/393 (26%), Positives = 175/393 (44%), Gaps = 59/393 (15%)
Query: 15 RIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGA 74
RIRVL+ + V+YWM +R R N++L AV+ A + P+ + + ++ A
Sbjct: 8 RIRVLRDLPVRADGEFVLYWMIAFRRRRSNFSLQRAVEWARELRKPLVILEAVRTRYEWA 67
Query: 75 KARQLGFMLRGLRLLQRNIEETFQ--ILFFLFQGEAEDNIPNFVRECG--ASLLVTDFSP 130
R F++ G++ ++ E Q +++ + + A++++TD P
Sbjct: 68 SDRLHRFIIEGMQDNAHDLGELRQSGVVYHPYVEPTHGAGAGLLEALAKRAAVVITDDFP 127
Query: 131 LREIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYL-- 188
+ + +V V + +D + ++P+ A++K A R + K L +L
Sbjct: 128 CFFLPQMTKVAARKVP--VRMETIDGNGILPM-RAADKTFTMAFHFRRWLQKNLKPHLAE 184
Query: 189 -----------IDYPMLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVP---------EIG 228
+ P L++ + T + D+ ++ A R A++P E+G
Sbjct: 185 EAFPEEDPLARVKLPALKKLPAEITERWPAADFKQLLGA--RGLAQLPIDHSVTPTSEVG 242
Query: 229 WCESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQIS----AQ 284
G +A VL + FL RL Y +RN P A SGLSP+LHFG +S A+
Sbjct: 243 ----GAASAARVL----ERFLDSRLSRY-GERNEP-DANAASGLSPWLHFGHVSVHDIAR 292
Query: 285 RC-ALEARKARKLCPE-------------AIDTFLEELIVRRELADNFCFYQPNYDSLKG 330
R A E+ KL + A + FL+ELI RE+ NFC N+D +
Sbjct: 293 RALARESWSHAKLSAKTDGKAGAWWGVSAACEGFLDELITWREIGFNFCSRNDNFDQDES 352
Query: 331 AWEWARKSLKDHASDKREHIYTKEQFEKAQTAD 363
W +K+L HA D R ++YT +QFE + T D
Sbjct: 353 LPTWVQKTLDKHAVDPRPNLYTLDQFESSTTHD 385
>gi|417302748|ref|ZP_12089836.1| deoxyribodipyrimidine photolyase [Rhodopirellula baltica WH47]
gi|327540991|gb|EGF27547.1| deoxyribodipyrimidine photolyase [Rhodopirellula baltica WH47]
Length = 837
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 91/343 (26%), Positives = 156/343 (45%), Gaps = 25/343 (7%)
Query: 31 VVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQ 90
V+YWM R +N AL A+ A+K +P+ V L +++ A R F+++G R +Q
Sbjct: 30 VLYWMHNALRGHENPALDAAIWMAHKTGLPLLVYHGLSEKYPYASDRHHAFIMQGARDVQ 89
Query: 91 RNIEETFQILFFLFQ--GEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICNRVSDS 148
R ++ F + G+ ++ + R A++LV++ P+ I +++ + V+
Sbjct: 90 RELQARGITYAFHLERHGQRGPHLRDLCRR--AAVLVSEEMPVAPIACWVERLRSLVTTP 147
Query: 149 VTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQPIE----KWTGT 204
+ + VD +VP + + + A R I L E + P E P K+TG+
Sbjct: 148 IML--VDTSCIVPS-QSIDAVPTRAFEFRRLIQSDL-ENRLSRPYEELPANLLPAKFTGS 203
Query: 205 R--QSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNN 262
ID + A L +V + D F K L Y RN+
Sbjct: 204 LGFAPIDLQDVDLAELISQCKVDHSVGPVADTPGGTRAGYARWDRFREKSLTQYSRQRNH 263
Query: 263 PLKPRALSGLSPYLHFGQISAQRCALEARK--ARKLCPEAIDTFLEELIVRRELADNFCF 320
P P +S LS YLH+G IS R A EA ARK +++EL+V RE+ FC
Sbjct: 264 PDDPLGVSRLSGYLHYGMISPFRIAREAAAMGARK--------YVDELVVWREMVFRFCL 315
Query: 321 -YQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTA 362
+ + D++ +W+R++L+ HA D R+ + E + +++
Sbjct: 316 EHVEDLDTMAVLPKWSRETLEKHAEDSRDEVLDWETLARGKSS 358
>gi|153005863|ref|YP_001380188.1| DNA photolyase FAD-binding [Anaeromyxobacter sp. Fw109-5]
gi|152029436|gb|ABS27204.1| DNA photolyase FAD-binding [Anaeromyxobacter sp. Fw109-5]
Length = 493
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 102/393 (25%), Positives = 161/393 (40%), Gaps = 58/393 (14%)
Query: 15 RIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAV--AFNLFDQFL 72
RIR + ++R V+YWM +RVR N AL A+ A + PVA+ A + D +
Sbjct: 12 RIRAANDAPVRRERAYVLYWMTAARRVRFNPALERAIALARELERPVAILEALRVGDPY- 70
Query: 73 GAKARQLGFMLRGL-----RLLQRNIEETFQILFFLFQGEAEDNIPNFV-RECGASLLVT 126
A R F+L+G+ RL R + + GE E + R C +VT
Sbjct: 71 -ASDRLHAFVLQGMAENARRLAGRVLHHPY---VERAPGEGEGLLEALAARACA---VVT 123
Query: 127 DFSPLREIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPE 186
D P + R +V V + VD VVP +A + +A R + +LLP
Sbjct: 124 DDLPTFFLPRQCAAAAAQVD--VRVEAVDGSCVVPFRLAGKDFP-TAHAYRRHLQRLLPA 180
Query: 187 YLIDYPMLEQP---------------IEKWTG-TRQSIDWDSIIAAVLRKGAEVPEIGWC 230
+L P + ++W T ++ + + A L VP
Sbjct: 181 WLDRLPSADPLARAALPPPPALSRGIAQRWPAVTPDALARPARLTASLPIDHGVPPAPLR 240
Query: 231 ESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISA---QRCA 287
A + + + +L + L Y R++P + SGLSP+LHFG +S+ R
Sbjct: 241 GGARAAGVRLAR-----WLEQGLPRYADARSDPDEEGVASGLSPWLHFGHVSSFEVVRAV 295
Query: 288 LE---------------ARKARKLCPEAIDTFLEELIVRRELADNFCFYQPNYDSLKGAW 332
L AR A + FL++L+ REL C ++ ++
Sbjct: 296 LRREGWTPALLSPGVTGARSGWWGVSAAAEAFLDQLVTWRELGFATCAHRADHREYGSLP 355
Query: 333 EWARKSLKDHASDKREHIYTKEQFEKAQTADPV 365
WAR +L+ HA D R H Y ++ + A+T DP+
Sbjct: 356 AWARATLEAHAGDPRPHAYDRDTLDAARTHDPL 388
>gi|183221779|ref|YP_001839775.1| deoxyribodipyrimidine photo-lyase [Leptospira biflexa serovar Patoc
strain 'Patoc 1 (Paris)']
gi|167780201|gb|ABZ98499.1| Deoxyribodipyrimidine photolyase (DNA photolyase; Photoreactivating
enzyme) [Leptospira biflexa serovar Patoc strain 'Patoc
1 (Paris)']
Length = 496
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 104/397 (26%), Positives = 176/397 (44%), Gaps = 61/397 (15%)
Query: 11 VQPGRIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQ 70
++ RIRV + + ++ V+YWM +R N A HAV+ A + N + V L
Sbjct: 1 MKSDRIRVCNEKPIQLEKSYVLYWMQAYRRFDANHAFNHAVNLAKELNKELIVYEGLRMD 60
Query: 71 FLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECG--ASLLVTDF 128
+ R F+L G+ Q +E +I ++ F ++ ++E AS++VTD
Sbjct: 61 YPWNSERIHQFILEGMIENQTRADE-LEIKYWPFVETPKNLGKGLLKEISENASVVVTDD 119
Query: 129 SPLREIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYL 188
P I +K+ ++ + +D ++++P + K +A+ LR I+K L
Sbjct: 120 FPCFIIPEQTEKLAKKIH--CQLLAIDGNSLIP-FSRFAKQASAARILRLWIHKELNR-- 174
Query: 189 IDYPMLE----------------QPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCES 232
++P + P E+ G +SID I+ + + P G +
Sbjct: 175 -EFPKMNTIIWKNEDLSKLNGKTNPPER-IGLPKSID--GILKLIPFQNIVSPVKG-VKG 229
Query: 233 GEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPR--ALSGLSPYLHFGQISAQR---CA 287
G + A+ +L + FL +L Y T R+ P +P A SGLSPYLHFG I
Sbjct: 230 GRNEALRLL----NDFLKHKLDLYLTKRSEPNRPELTATSGLSPYLHFGWIGLDEIFVAV 285
Query: 288 LEARKARKLCPE------------------AIDTFLEELIVRRELADNFCFY---QPNYD 326
L+ K PE + + FL+ELI R++ + F+ +P
Sbjct: 286 LKHSAKGKWNPERMSHEKPGDREHFYSPSVSANHFLDELITWRDIG--YLFFWKDKPKQI 343
Query: 327 SLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTAD 363
+L +W + + + H +D RE++YT EQFE A+T D
Sbjct: 344 NLSHLPDWVKTNFQKHQNDHREYVYTLEQFESAKTHD 380
>gi|440716033|ref|ZP_20896552.1| deoxyribodipyrimidine photolyase [Rhodopirellula baltica SWK14]
gi|436438979|gb|ELP32478.1| deoxyribodipyrimidine photolyase [Rhodopirellula baltica SWK14]
Length = 837
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 91/343 (26%), Positives = 155/343 (45%), Gaps = 25/343 (7%)
Query: 31 VVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQ 90
V+YWM R +N AL A+ A+K +P+ V L +++ A R F+++G R +Q
Sbjct: 30 VLYWMHNALRGHENPALDAAIWMAHKTGLPLLVYHGLSEKYPYASDRHHAFIMQGARDVQ 89
Query: 91 RNIEETFQILFFLFQ--GEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICNRVSDS 148
R ++ F + G+ ++ + R A++LV++ P+ I +++ + V+
Sbjct: 90 RELQARGITYAFHLERHGQRGPHLRDLCRR--AAVLVSEEMPVAPIACWVERLRSLVTTP 147
Query: 149 VTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQPIE----KWTGT 204
+ + VD +VP + + + A R I L E + P E P K+TG
Sbjct: 148 IML--VDTSCIVPS-QSVDAVPTRAFEFRRLIQSEL-ENRLSRPYEELPANLLPAKFTGP 203
Query: 205 R--QSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNN 262
ID + A L +V + D F K L Y RN+
Sbjct: 204 LGFAPIDLQDVDLAELISQCKVDHSVGPVADTPGGTRAGYARWDRFREKSLTQYSKQRNH 263
Query: 263 PLKPRALSGLSPYLHFGQISAQRCALEARK--ARKLCPEAIDTFLEELIVRRELADNFCF 320
P P +S LS YLH+G IS R A EA ARK +++EL+V RE+ FC
Sbjct: 264 PDDPLGVSRLSGYLHYGMISPFRIAREAAAMGARK--------YVDELVVWREMVFRFCL 315
Query: 321 -YQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTA 362
+ + D++ +W+R++L+ HA D R+ + E + +++
Sbjct: 316 EHVEDLDTMAVLPKWSRETLEKHAEDSRDEVLDWEALARGKSS 358
>gi|398338796|ref|ZP_10523499.1| deoxyribodipyrimidine photolyase [Leptospira kirschneri serovar Bim
str. 1051]
Length = 532
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 103/406 (25%), Positives = 177/406 (43%), Gaps = 73/406 (17%)
Query: 15 RIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGA 74
R+R L Q + +K+ ++YWM +R+ N +L +++ + K + + L + +
Sbjct: 25 RVRELGQNPILEKKPYILYWMSMARRLTWNHSLDYSIHLSQKYKKELLIYEPLKMNYPWS 84
Query: 75 KARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVREC------GASLLVTDF 128
R F+L G+ N++E Q L ++ E + N + E A+L+VTD
Sbjct: 85 SPRLHKFILEGMSY---NVKEA-QRLGLTYRAFVETH-GNPIEEVFEKISSEAALVVTDD 139
Query: 129 SPLREIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYL 188
P + +++ ++ + VD+++++P+ + E +A+ LR +++KL PE +
Sbjct: 140 YPAYIVPELLEQVSKKIRCKFLV--VDSNSIIPLTLYGE-FASAARILRPRVHKLFPE-V 195
Query: 189 IDYPMLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVP--EIGWCESGEDAAMEVLK---- 242
+ +P + + S W L K P +I W E G D E+ K
Sbjct: 196 WKFRSFHKPHKPFREKENS--W-------LEKNPNSPLKKIVWFEGGVDQIPEICKNCNF 246
Query: 243 ---------GSKDG----------FLTKRLKNYPTDRNNPLKPRAL--SGLSPYLHFGQI 281
G K G FL L Y R+NP P S LSPYLHFG I
Sbjct: 247 NFQNILPAPGKKGGREEGIRLLRKFLKHGLFGYAELRSNPKPPEESYSSFLSPYLHFGHI 306
Query: 282 SAQRCALEA--------------------RKARKLCPEA-IDTFLEELIVRRELADNFCF 320
S + E RK P+ +++FL+ELI R++ +
Sbjct: 307 SQEEIVSEVLNWNLDGPWTPGVIIPENKNRKEGYFHPDPNVNSFLDELITWRDVGFLMFW 366
Query: 321 YQPNY-DSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPV 365
+P++ L +W +K+L H +D R +IYTKEQ E ++T D +
Sbjct: 367 KKPSFRKDLSILPDWIQKNLDFHKNDVRPYIYTKEQLENSKTHDVI 412
>gi|126735514|ref|ZP_01751259.1| probable deoxyribodipyrimidine photolyase [Roseobacter sp. CCS2]
gi|126714701|gb|EBA11567.1| probable deoxyribodipyrimidine photolyase [Roseobacter sp. CCS2]
Length = 487
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 89/343 (25%), Positives = 138/343 (40%), Gaps = 18/343 (5%)
Query: 31 VVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQ 90
V+ W+ + R DN + A+D N+ +PV V L + + A R F+LR R LQ
Sbjct: 29 VLCWIQQTLRSDDNPLIDAAIDLGNRLGLPVLVYHGLREDYPHASDRLHHFILRASRDLQ 88
Query: 91 RN-IEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICNRVSDSV 149
R + + + F+ Q + + + A+ ++TD P+ R+ D R +V
Sbjct: 89 RECVRRGLRCVTFVDQAQTREKGLVYRLAATAAAVLTDDQPVFVARQQADNFAARCDRAV 148
Query: 150 TIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQPIEKWTG------ 203
VD +VP V L+ + R L P+Y + +TG
Sbjct: 149 --FAVDTARLVPTRVLPAGLK-TTPAFRKASGALRPQYEVHRNNFVPDCPAYTGDVCFKD 205
Query: 204 ---TRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLKNYPTDR 260
+ S + + A +P E AA L DGF+T L YP R
Sbjct: 206 ANLAQASNTALNDLMAHCDIDHSLPPAPDFEPSAAAARSAL----DGFVTDALATYPYRR 261
Query: 261 NNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVRRELADNFCF 320
NN +S LSPYLHFG + ++ R A + A +L+EL+ RE +
Sbjct: 262 NNAADKAGVSRLSPYLHFGVLGPRKMTAAVRAA-DVTANAKWKYLDELLTWREYFHYLAY 320
Query: 321 YQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTAD 363
N+ S + + R SL+ H+SD R +Y T D
Sbjct: 321 QDDNFASFRSLPDAPRTSLEAHSSDPRPTLYALTDLVHGNTGD 363
>gi|418676413|ref|ZP_13237694.1| FAD binding domain of DNA photolyase [Leptospira kirschneri serovar
Grippotyphosa str. RM52]
gi|418688139|ref|ZP_13249296.1| FAD binding domain of DNA photolyase [Leptospira kirschneri serovar
Grippotyphosa str. Moskva]
gi|418742734|ref|ZP_13299104.1| FAD binding domain of DNA photolyase [Leptospira kirschneri serovar
Valbuzzi str. 200702274]
gi|421091796|ref|ZP_15552561.1| FAD binding domain of DNA photolyase [Leptospira kirschneri str.
200802841]
gi|400323241|gb|EJO71094.1| FAD binding domain of DNA photolyase [Leptospira kirschneri serovar
Grippotyphosa str. RM52]
gi|409999541|gb|EKO50232.1| FAD binding domain of DNA photolyase [Leptospira kirschneri str.
200802841]
gi|410737563|gb|EKQ82304.1| FAD binding domain of DNA photolyase [Leptospira kirschneri serovar
Grippotyphosa str. Moskva]
gi|410750109|gb|EKR07092.1| FAD binding domain of DNA photolyase [Leptospira kirschneri serovar
Valbuzzi str. 200702274]
Length = 516
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 103/406 (25%), Positives = 177/406 (43%), Gaps = 73/406 (17%)
Query: 15 RIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGA 74
R+R L Q + +K+ ++YWM +R+ N +L +++ + K + + L + +
Sbjct: 9 RVRELGQNPILEKKPYILYWMSMARRLTWNHSLDYSIHLSQKYKKELLIYEPLKMNYPWS 68
Query: 75 KARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVREC------GASLLVTDF 128
R F+L G+ N++E Q L ++ E + N + E A+L+VTD
Sbjct: 69 SPRLHKFILEGMSY---NVKEA-QRLGLTYRAFVETH-GNPIEEVFEKISSEAALVVTDD 123
Query: 129 SPLREIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYL 188
P + +++ ++ + VD+++++P+ + E +A+ LR +++KL PE +
Sbjct: 124 YPAYIVPELLEQVSKKIRCKFLV--VDSNSIIPLTLYGE-FASAARILRPRVHKLFPE-V 179
Query: 189 IDYPMLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVP--EIGWCESGEDAAMEVLK---- 242
+ +P + + S W L K P +I W E G D E+ K
Sbjct: 180 WKFRSFHKPHKPFREKENS--W-------LEKNPNSPLKKIVWFEGGVDQIPEICKNCNF 230
Query: 243 ---------GSKDG----------FLTKRLKNYPTDRNNPLKPRAL--SGLSPYLHFGQI 281
G K G FL L Y R+NP P S LSPYLHFG I
Sbjct: 231 NFQNILPAPGKKGGREEGIRLLRKFLKHGLFGYAELRSNPKPPEESYSSFLSPYLHFGHI 290
Query: 282 SAQRCALEA--------------------RKARKLCPEA-IDTFLEELIVRRELADNFCF 320
S + E RK P+ +++FL+ELI R++ +
Sbjct: 291 SQEEIVSEVLNWNLDGPWTPGVIIPENKNRKEGYFHPDPNVNSFLDELITWRDVGFLMFW 350
Query: 321 YQPNY-DSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPV 365
+P++ L +W +K+L H +D R +IYTKEQ E ++T D +
Sbjct: 351 KKPSFRKDLSILPDWIQKNLDFHKNDVRPYIYTKEQLENSKTHDVI 396
>gi|312091466|ref|XP_003146989.1| DNA photolyase 1 [Loa loa]
Length = 261
Score = 89.0 bits (219), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 49/119 (41%), Positives = 73/119 (61%), Gaps = 3/119 (2%)
Query: 246 DGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFL 305
D F+ LK Y +RN P + S LSPY+HFG ++ E +++ K A D FL
Sbjct: 2 DYFIANNLKAYDKERNIP-NGKKQSLLSPYMHFGMLNPITIVNEVKQS-KAPKSAKDAFL 59
Query: 306 EELIVRRELADNFCFY-QPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTAD 363
EE++VRRELA NF +Y + YD+ EWA+K++++H DKRE+IY ++ E+ +T D
Sbjct: 60 EEMVVRRELAHNFVYYYRDTYDTFDCLPEWAKKTMEEHRFDKREYIYNYKELEEGRTHD 118
>gi|421612943|ref|ZP_16054037.1| deoxyribodipyrimidine photolyase [Rhodopirellula baltica SH28]
gi|408496253|gb|EKK00818.1| deoxyribodipyrimidine photolyase [Rhodopirellula baltica SH28]
Length = 837
Score = 89.0 bits (219), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 91/343 (26%), Positives = 155/343 (45%), Gaps = 25/343 (7%)
Query: 31 VVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQ 90
V+YWM R +N AL A+ A+K +P+ V L +++ A R F+++G R +Q
Sbjct: 30 VLYWMHNALRGHENPALDAAIWMAHKTGLPLLVYHGLSEKYPYASDRHHAFIMQGARDVQ 89
Query: 91 RNIEETFQILFFLFQ--GEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICNRVSDS 148
R ++ F + G+ ++ + R A++LV++ P+ I +++ + V+
Sbjct: 90 RELQARGITYAFHLERHGQRGPHLRDLCRR--AAVLVSEEMPVAPIACWVERLRSLVTTP 147
Query: 149 VTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQPIE----KWTGT 204
+ + VD +VP + + + A R I L E + P E P K+TG
Sbjct: 148 IML--VDTSCIVPS-QSIDAVPTRAFEFRRLIQSDL-ENRLSRPYEELPANLLPAKFTGP 203
Query: 205 R--QSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNN 262
ID + A L +V + D F K L Y RN+
Sbjct: 204 LGFDPIDLQDVDLAELISQCKVDHSVGPVADTPGGTRAGYARWDRFREKSLTQYSRQRNH 263
Query: 263 PLKPRALSGLSPYLHFGQISAQRCALEARK--ARKLCPEAIDTFLEELIVRRELADNFCF 320
P P +S LS YLH+G IS R A EA ARK +++EL+V RE+ FC
Sbjct: 264 PDDPLGVSRLSGYLHYGMISPFRIAREAAAMGARK--------YVDELVVWREMVFRFCL 315
Query: 321 -YQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTA 362
+ + D++ +W+R++L+ HA D R+ + E + +++
Sbjct: 316 EHVEDLDTMAVLPKWSRETLEKHAEDSRDEVLDWETLARGKSS 358
>gi|421114254|ref|ZP_15574679.1| putative deoxyribodipyrimidine photo-lyase [Leptospira santarosai
str. JET]
gi|410800416|gb|EKS06609.1| putative deoxyribodipyrimidine photo-lyase [Leptospira santarosai
str. JET]
Length = 503
Score = 88.2 bits (217), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 99/402 (24%), Positives = 176/402 (43%), Gaps = 65/402 (16%)
Query: 15 RIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGA 74
R+R L Q + +++ ++YWM +R+ N +L +A+ + K + + L + +
Sbjct: 9 RVRDLNQKPIREEKPILLYWMSTARRLVWNHSLDYAIHLSQKYKKELLICEPLKTDYPWS 68
Query: 75 KARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGA--SLLVTDFSPLR 132
R F+L G+ N E + + ++ +I + + + A SL+VTD P
Sbjct: 69 SPRLHRFILEGM-ASNVNTAEKLGLTYRALVETSDGSIADVMEKIAAKASLVVTDDYPAY 127
Query: 133 EIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYP 192
+ ++ + + VD++++VP+ + E +A+ LR +++KL PE +
Sbjct: 128 IVPEMLSEMGRKFE--CKLFAVDSNSIVPLSLYGE-FASAARILRPRVHKLFPE-AWKFR 183
Query: 193 MLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVP--EIGWCESGEDAAMEVLK-------- 242
+P + + +S W L K ++ P +I WC ED ++ K
Sbjct: 184 SSPKPAKPYRDPGES--W-------LEKNSDSPLNKIRWCNQKEDTIEKICKNSNFICSN 234
Query: 243 ---------GSKDG------FLTKRLKNYPTDRNNPLKPRAL--SGLSPYLHFGQISAQR 285
G ++G FL + L Y R+ P P+ S LSPYLHFG +S +
Sbjct: 235 VLPVSGKIGGREEGLKLLKRFLKQGLNGYAQLRSQPKDPKESYSSLLSPYLHFGHVSQEE 294
Query: 286 CA-------LEA-------------RKARKLCP-EAIDTFLEELIVRRELADNFCFYQPN 324
LE RK P E +++FL+EL+ R++ + P+
Sbjct: 295 VISAVLDWNLEEPWNPGIIVPENKNRKEGYFHPDENVNSFLDELVTWRDVGFLMFWKNPS 354
Query: 325 Y-DSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPV 365
+ L +W RK+L H +D R +YTKEQ E A+T D +
Sbjct: 355 FRKDLSILPDWIRKNLDFHKNDARPFLYTKEQLENAKTHDAI 396
>gi|449136587|ref|ZP_21771963.1| deoxyribodipyrimidine photolyase [Rhodopirellula europaea 6C]
gi|448884760|gb|EMB15236.1| deoxyribodipyrimidine photolyase [Rhodopirellula europaea 6C]
Length = 837
Score = 87.8 bits (216), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 91/347 (26%), Positives = 156/347 (44%), Gaps = 33/347 (9%)
Query: 31 VVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQ 90
V+YWM R +N AL A+ A+K +P+ V L +++ A R ++++G R +Q
Sbjct: 30 VLYWMHNAVRGHENPALDAAIWMAHKTGLPLLVYHGLSEKYPYASDRHHAYIMQGARDVQ 89
Query: 91 RNIEETFQILFFLFQ--GEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICNRVSDS 148
R + F + G ++ + R A++LV++ P+ I +++ + V+
Sbjct: 90 RELHARGVSYAFHLERHGHRGPHLRDLCRR--AAVLVSEEMPVAPISCWVERLRSLVTTP 147
Query: 149 VTIHEVDAHNVVPVW----VASEKLEYS---AKTLRGKINKL---LPEYLIDYPMLEQPI 198
+ + VD VVP V + E+ L ++ + LP L+ E P+
Sbjct: 148 IML--VDTSCVVPSQLIDSVPTRAFEFRRLIQNELESRLTRSYEELPANLVPSKFTE-PL 204
Query: 199 EKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLKNYPT 258
Q +D+ +I+ + V + G A D F K L Y
Sbjct: 205 GFAPIDLQDVDFADLISQC-KIDHSVGPVTDTPGGTRAGY----ARWDRFREKSLSQYSR 259
Query: 259 DRNNPLKPRALSGLSPYLHFGQISAQRCALEARK--ARKLCPEAIDTFLEELIVRRELAD 316
RN+P P +S LS YLH+G IS R A EA ARK +++EL+V RE+
Sbjct: 260 QRNHPDDPLGVSRLSGYLHYGMISPFRIAREAAAMGARK--------YVDELVVWREMVF 311
Query: 317 NFCF-YQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTA 362
FC + + D++ +WAR++L+ HA D RE + E + +++
Sbjct: 312 RFCLEHVEDLDTMAVLPKWARETLEKHADDPREEVLDWETLARGKSS 358
>gi|340384749|ref|XP_003390873.1| PREDICTED: deoxyribodipyrimidine photo-lyase-like, partial
[Amphimedon queenslandica]
Length = 154
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 53/144 (36%), Positives = 78/144 (54%), Gaps = 14/144 (9%)
Query: 97 FQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLR-------EIRRCKDKICNRVSDSV 149
+I F L G+A+ +P F+ + S++V DFSPLR E DKI V
Sbjct: 5 LKIPFHLLLGKAQSCLPPFIAKESVSVVVCDFSPLRVPLGWVKETGAELDKI------KV 58
Query: 150 TIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQPIEKWTGTRQSID 209
+ +VDAHN+VPVW+AS+K EY+A+T+R KI+K LPE+L ++P + T +S +
Sbjct: 59 PLVQVDAHNIVPVWLASDKQEYAARTIRNKIHKFLPEFLTEFPPVTVHTHNSKLTMKSTN 118
Query: 210 WDSIIAAVLRKGAEVPEIGWCESG 233
W + L V E+ W G
Sbjct: 119 WIKAKES-LEIDMTVSEVSWVTPG 141
>gi|418744279|ref|ZP_13300635.1| putative deoxyribodipyrimidine photo-lyase [Leptospira santarosai
str. CBC379]
gi|418753809|ref|ZP_13310049.1| putative deoxyribodipyrimidine photo-lyase [Leptospira santarosai
str. MOR084]
gi|409965852|gb|EKO33709.1| putative deoxyribodipyrimidine photo-lyase [Leptospira santarosai
str. MOR084]
gi|410794730|gb|EKR92630.1| putative deoxyribodipyrimidine photo-lyase [Leptospira santarosai
str. CBC379]
Length = 503
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 99/402 (24%), Positives = 175/402 (43%), Gaps = 65/402 (16%)
Query: 15 RIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGA 74
R+R L Q + +++ ++YWM +R+ N +L +A+ + K + + L + +
Sbjct: 9 RVRDLNQKPIREEKPILLYWMSMARRLVWNHSLDYAIHLSQKYKKELLICEPLKTDYPWS 68
Query: 75 KARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGA--SLLVTDFSPLR 132
R F+L G+ N E + + + +I + + + A SL+VTD P
Sbjct: 69 SPRLHRFILEGM-ASNVNTAEKLGLTYRALVETPDGSIADVMEKIAAKASLVVTDDYPAY 127
Query: 133 EIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYP 192
+ ++ + + VD++++VP+ + E +A+ LR +++KL PE +
Sbjct: 128 IVPEMLSEMGRKFE--CKLFAVDSNSIVPLSLYGE-FASAARILRPRVHKLFPE-AWKFR 183
Query: 193 MLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVP--EIGWCESGEDAAMEVLK-------- 242
+P + + +S W L K ++ P +I WC ED ++ K
Sbjct: 184 SSPKPAKPYRDPGES--W-------LEKNSDSPLNKIRWCNQKEDTIEKICKNSNFICSN 234
Query: 243 ---------GSKDG------FLTKRLKNYPTDRNNPLKPRAL--SGLSPYLHFGQISAQR 285
G ++G FL + L Y R+ P P+ S LSPYLHFG +S +
Sbjct: 235 VLPVSGKIGGREEGLKLLKRFLKQGLNGYAQLRSQPKDPKESYSSLLSPYLHFGHVSQEE 294
Query: 286 CA-------LEA-------------RKARKLCP-EAIDTFLEELIVRRELADNFCFYQPN 324
LE RK P E +++FL+EL+ R++ + P+
Sbjct: 295 VISAVLDWNLEEPWNPGIIVPENKNRKEGYFHPDENVNSFLDELVTWRDVGFLMFWKNPS 354
Query: 325 Y-DSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPV 365
+ L +W RK+L H +D R +YTKEQ E A+T D +
Sbjct: 355 FRKDLSILPDWIRKNLDFHKNDARPFLYTKEQLENAKTHDAI 396
>gi|47834997|gb|AAT39133.1| type II CPD DNA photolyase [Marchantia polymorpha]
Length = 118
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 37/54 (68%), Positives = 47/54 (87%)
Query: 310 VRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTAD 363
VRREL DN+C+YQPNYD+L+GA+ WAR+SL+ HA+D RE++YTKEQ EK QT D
Sbjct: 1 VRRELGDNYCYYQPNYDNLQGAFPWARESLQKHAADPREYVYTKEQLEKGQTYD 54
>gi|418693942|ref|ZP_13254990.1| FAD binding domain of DNA photolyase [Leptospira kirschneri str.
H1]
gi|421130863|ref|ZP_15591055.1| FAD binding domain of DNA photolyase [Leptospira kirschneri str.
2008720114]
gi|409958294|gb|EKO17187.1| FAD binding domain of DNA photolyase [Leptospira kirschneri str.
H1]
gi|410357966|gb|EKP05171.1| FAD binding domain of DNA photolyase [Leptospira kirschneri str.
2008720114]
Length = 532
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 101/406 (24%), Positives = 177/406 (43%), Gaps = 73/406 (17%)
Query: 15 RIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGA 74
R+R L Q + +++ ++YWM +R+ N +L +++ + K + + L + +
Sbjct: 25 RVRELGQNPILEEKPYILYWMSMARRLTWNHSLDYSIHLSQKYKKELLIYEPLKMNYPWS 84
Query: 75 KARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVREC------GASLLVTDF 128
R F+L G+ N++E Q L ++ E + N + E A+L++TD
Sbjct: 85 SPRLHKFILEGMSY---NVKEA-QRLGLTYRAFVETH-GNPIEEVFEKISSEAALVITDD 139
Query: 129 SPLREIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYL 188
P + ++ ++ + VD+++++P+ + E +A+ LR +++KL PE +
Sbjct: 140 YPAYIVPELLGQVSKKIRCKFLV--VDSNSIIPLTLYGE-FASAARILRPRVHKLFPE-V 195
Query: 189 IDYPMLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVP--EIGWCESGEDAAMEVLK---- 242
+ +P + + S W L K P +I W E G D E+ K
Sbjct: 196 WKFRSFHKPHKPFREKENS--W-------LEKNPNSPLKKIVWFEGGVDQIPEICKNCNF 246
Query: 243 ---------GSKDG----------FLTKRLKNYPTDRNNPLKPRAL--SGLSPYLHFGQI 281
G K G FL + L Y R+NP P S LSPYLHFG I
Sbjct: 247 NFQNILPAPGKKGGREEGIKLLRKFLKRGLFGYAELRSNPKPPEESYSSFLSPYLHFGHI 306
Query: 282 SAQRCALEA--------------------RKARKLCPEA-IDTFLEELIVRRELADNFCF 320
S + E RK P+ +++FL+ELI R++ +
Sbjct: 307 SQEEIVSEVLNWNLDGPWTPGVIIPENKNRKEGYFHPDPNVNSFLDELITWRDVGFLMFW 366
Query: 321 YQPNY-DSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPV 365
+P++ L +W +K+L H +D R +IYTKEQ E ++T D +
Sbjct: 367 KKPSFRKDLSILPDWIQKNLDFHKNDVRPYIYTKEQLENSKTHDVI 412
>gi|421105640|ref|ZP_15566220.1| FAD binding domain of DNA photolyase [Leptospira kirschneri str.
H2]
gi|410009326|gb|EKO62982.1| FAD binding domain of DNA photolyase [Leptospira kirschneri str.
H2]
Length = 532
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 101/406 (24%), Positives = 177/406 (43%), Gaps = 73/406 (17%)
Query: 15 RIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGA 74
R+R L Q + +++ ++YWM +R+ N +L +++ + K + + L + +
Sbjct: 25 RVRELGQNPILEEKPYILYWMSMARRLTWNHSLDYSIHLSQKYKKELLIYEPLKMNYPWS 84
Query: 75 KARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVREC------GASLLVTDF 128
R F+L G+ N++E Q L ++ E + N + E A+L++TD
Sbjct: 85 SPRLHKFILEGMSY---NVKEA-QRLGLTYRAFVETH-GNPIEEVFEKISSEAALVITDD 139
Query: 129 SPLREIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYL 188
P + ++ ++ + VD+++++P+ + E +A+ LR +++KL PE +
Sbjct: 140 YPAYIVPELLGQVSKKIRCKFLV--VDSNSIIPLTLYGE-FASAARILRPRVHKLFPE-V 195
Query: 189 IDYPMLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVP--EIGWCESGEDAAMEVLK---- 242
+ +P + + S W L K P +I W E G D E+ K
Sbjct: 196 WKFRSFHKPHKPFREKENS--W-------LEKNPNSPLKKIVWFEGGVDQIPEICKNCNF 246
Query: 243 ---------GSKDG----------FLTKRLKNYPTDRNNPLKPRAL--SGLSPYLHFGQI 281
G K G FL + L Y R+NP P S LSPYLHFG I
Sbjct: 247 NFQNIPPAPGKKGGREEGIKLLRKFLKRGLFGYAELRSNPKPPEESYSSFLSPYLHFGHI 306
Query: 282 SAQRCALEA--------------------RKARKLCPEA-IDTFLEELIVRRELADNFCF 320
S + E RK P+ +++FL+ELI R++ +
Sbjct: 307 SQEEIVSEVLNWNLDGPWTPGVIIPENKNRKEGYFHPDPNVNSFLDELITWRDVGFLMFW 366
Query: 321 YQPNY-DSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPV 365
+P++ L +W +K+L H +D R +IYTKEQ E ++T D +
Sbjct: 367 KKPSFRKDLSILPDWIQKNLDFHKNDVRPYIYTKEQLENSKTHDVI 412
>gi|410451480|ref|ZP_11305486.1| putative deoxyribodipyrimidine photo-lyase [Leptospira sp. Fiocruz
LV3954]
gi|410014696|gb|EKO76822.1| putative deoxyribodipyrimidine photo-lyase [Leptospira sp. Fiocruz
LV3954]
Length = 503
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 98/402 (24%), Positives = 176/402 (43%), Gaps = 65/402 (16%)
Query: 15 RIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGA 74
R+R L Q + +++ ++YWM +R+ N +L +A+ + K + + L + +
Sbjct: 9 RVRDLNQKPIREEKPILLYWMSMARRLVWNHSLDYAIHLSQKYKKELLICEPLKTDYPWS 68
Query: 75 KARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGA--SLLVTDFSPLR 132
R F+L G+ N E + + + +I + + + A +L+VTD P
Sbjct: 69 SPRLHRFILEGMSS-NVNTAEKLGLTYRALVETPDGSIADVMEKIAAKAALVVTDDYPAY 127
Query: 133 EIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYP 192
+ ++ + + VD++++VP+ + E +A+ LR +++KL PE +
Sbjct: 128 IVPEMLSEMGRKFE--CKLFAVDSNSIVPLSLYGE-FASAARILRPRVHKLFPE-AWKFR 183
Query: 193 MLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVP--EIGWCESGEDAAMEVLK-------- 242
+P + + +S W L K ++ P +I WC ED ++ K
Sbjct: 184 SSPKPAKPYRDPGES--W-------LEKNSDSPLNKIRWCNQKEDTIEKICKNSNFICSN 234
Query: 243 ---------GSKDG------FLTKRLKNYPTDRNNPLKPRAL--SGLSPYLHFGQISAQR 285
G ++G FL + L Y R+ P P+ S LSPYLHFG +S +
Sbjct: 235 VLPVSGKIGGREEGLKLLKRFLKQGLNGYAQLRSQPKDPKESYSSLLSPYLHFGHVSQEE 294
Query: 286 CA-------LEA-------------RKARKLCP-EAIDTFLEELIVRRELADNFCFYQPN 324
LE RK P E +++FL+EL+ R++ + +P+
Sbjct: 295 VISAVLDWNLEEPWNPGIIVPENKNRKEGYFHPDENVNSFLDELVTWRDVGFLMFWKKPS 354
Query: 325 Y-DSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPV 365
+ L +W RK+L H +D R +YTKEQ E A+T D +
Sbjct: 355 FRKDLSILPDWIRKNLDFHKNDARPFLYTKEQLENAKTHDAI 396
>gi|359686417|ref|ZP_09256418.1| deoxyribodipyrimidine photolyase [Leptospira santarosai str.
2000030832]
Length = 503
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 98/402 (24%), Positives = 175/402 (43%), Gaps = 65/402 (16%)
Query: 15 RIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGA 74
R+R L Q + +++ ++YWM +R+ N +L +A+ + K + + L + +
Sbjct: 9 RVRDLNQKPIREEKPILLYWMSMARRLVWNHSLDYAIHLSQKYKKELLICEPLKTDYPWS 68
Query: 75 KARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGA--SLLVTDFSPLR 132
R F+L G+ N E + + + +I + + + A +L+VTD P
Sbjct: 69 SPRLHRFILEGMSS-NVNTAEKLGLTYRALVETPDGSIADVMEKIAAKAALVVTDDYPAY 127
Query: 133 EIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYP 192
+ ++ + + VD++++VP+ + E +A+ LR +++KL PE +
Sbjct: 128 IVPEMLSEMGRKFE--CKLFAVDSNSIVPLSLYGE-FASAARILRPRVHKLFPE-AWKFR 183
Query: 193 MLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVP--EIGWCESGEDAAMEVLK-------- 242
+P + + +S W L K ++ P +I WC ED ++ K
Sbjct: 184 SSPKPAKPYRDPGES--W-------LEKNSDSPLNKIRWCNQKEDTIEKICKNSNFICSN 234
Query: 243 ---------GSKDG------FLTKRLKNYPTDRNNPLKPRAL--SGLSPYLHFGQISAQR 285
G ++G FL + L Y R+ P P+ S LSPYLHFG +S +
Sbjct: 235 VLPVSGKIGGREEGLKLLKRFLKQGLNGYAQLRSQPKDPKESYSSLLSPYLHFGHVSQEE 294
Query: 286 CA-------LEA-------------RKARKLCP-EAIDTFLEELIVRRELADNFCFYQPN 324
LE RK P E +++FL+EL+ R++ + P+
Sbjct: 295 VISAVLDWNLEEPWNPGIIVPENKNRKEGYFHPDENVNSFLDELVTWRDVGFLMFWKNPS 354
Query: 325 Y-DSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPV 365
+ L +W RK+L H +D R +YTKEQ E A+T D +
Sbjct: 355 FRKDLSILPDWIRKNLDFHKNDARPFLYTKEQLENAKTHDAI 396
>gi|422005434|ref|ZP_16352619.1| deoxyribodipyrimidine photolyase [Leptospira santarosai serovar
Shermani str. LT 821]
gi|417255878|gb|EKT85328.1| deoxyribodipyrimidine photolyase [Leptospira santarosai serovar
Shermani str. LT 821]
Length = 503
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 98/402 (24%), Positives = 175/402 (43%), Gaps = 65/402 (16%)
Query: 15 RIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGA 74
R+R L Q + +++ ++YWM +R+ N +L +A+ + K + + L + +
Sbjct: 9 RVRDLNQKPIREEKPILLYWMSMARRLVWNHSLDYAIHLSQKYKKELLICEPLKTDYPWS 68
Query: 75 KARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGA--SLLVTDFSPLR 132
R F+L G+ N E + + + +I + + + A +L+VTD P
Sbjct: 69 SPRLHRFILEGM-ASNVNTAEKLGLTYRTLVETPDGSIADVMEKIAAKAALVVTDDYPAY 127
Query: 133 EIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYP 192
+ ++ + + VD++++VP+ + E +A+ LR +++KL PE +
Sbjct: 128 IVPEMLSEMGRKFE--CKLFAVDSNSIVPLSLYGE-FASAARILRPRVHKLFPE-AWKFR 183
Query: 193 MLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVP--EIGWCESGEDAAMEVLK-------- 242
+P + + +S W L K ++ P +I WC ED ++ K
Sbjct: 184 SSPKPAKPYRDPGES--W-------LEKNSDSPLNKIRWCNQKEDTIEKICKNSNFICSN 234
Query: 243 ---------GSKDG------FLTKRLKNYPTDRNNPLKPRAL--SGLSPYLHFGQISAQR 285
G ++G FL + L Y R+ P P+ S LSPYLHFG +S +
Sbjct: 235 VLPVSGKIGGREEGLKLLKRFLKQGLNGYAQLRSQPKDPKESYSSLLSPYLHFGHVSQEE 294
Query: 286 CA-------LEA-------------RKARKLCP-EAIDTFLEELIVRRELADNFCFYQPN 324
LE RK P E +++FL+EL+ R++ + P+
Sbjct: 295 VISAVLDWNLEEPWNPGIIVPENKNRKEGYFHPDENVNSFLDELVTWRDVGFLMFWKNPS 354
Query: 325 Y-DSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPV 365
+ L +W RK+L H +D R +YTKEQ E A+T D +
Sbjct: 355 FRKDLSILPDWIRKNLDFHKNDARPFLYTKEQLENAKTHDAI 396
>gi|456874649|gb|EMF89921.1| putative deoxyribodipyrimidine photo-lyase [Leptospira santarosai
str. ST188]
Length = 503
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 99/402 (24%), Positives = 174/402 (43%), Gaps = 65/402 (16%)
Query: 15 RIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGA 74
R+R L Q + +++ ++YWM +R+ N +L +A+ + K + + L + +
Sbjct: 9 RVRDLNQKPIREEKPILLYWMSMARRLVWNHSLDYAIHLSQKYKKELLICEPLKTDYPWS 68
Query: 75 KARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGA--SLLVTDFSPLR 132
R F+L G+ N E + + + +I + + + A SL+VTD P
Sbjct: 69 SPRLHRFILEGM-ASNVNTAEKLGLTYRALVETPDGSIADVMEKIAAKASLVVTDDYPAY 127
Query: 133 EIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYP 192
+ ++ + + VD++++VP+ + E +A+ LR +++KL PE +
Sbjct: 128 IVPEMLSEMGRKFE--CKLFAVDSNSIVPLSLYGE-FASAARILRPRVHKLFPE-AWKFR 183
Query: 193 MLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVP--EIGWCESGEDAAMEVLKGS------ 244
+P + + +S W L K ++ P +I WC ED ++ K S
Sbjct: 184 SSPKPAKPYRDPGES--W-------LEKNSDSPLNKIRWCNQKEDTIEKICKNSNFICSN 234
Query: 245 -----------KDG------FLTKRLKNYPTDRNNPLKPRAL--SGLSPYLHFGQISAQR 285
++G FL L Y R+ P P+ S LSPYLHFG +S +
Sbjct: 235 VLPVSGKIGEREEGLKLLKRFLKHGLNGYAQLRSQPKDPKESYSSLLSPYLHFGHVSQEE 294
Query: 286 CA-------LEA-------------RKARKLCP-EAIDTFLEELIVRRELADNFCFYQPN 324
LE RK P E +++FL+EL+ R++ + P+
Sbjct: 295 VISAVLDWNLEEPWNPGIIVPENKNRKEGYFHPDENVNSFLDELVTWRDVGFLMFWKNPS 354
Query: 325 Y-DSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPV 365
+ L +W RK+L H +D R +YTKEQ E A+T D +
Sbjct: 355 FRKDLSILPDWIRKNLDFHKNDARPFLYTKEQLENAKTHDAI 396
>gi|410939373|ref|ZP_11371200.1| FAD binding domain of DNA photolyase [Leptospira noguchii str.
2006001870]
gi|410785241|gb|EKR74205.1| FAD binding domain of DNA photolyase [Leptospira noguchii str.
2006001870]
Length = 516
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 99/406 (24%), Positives = 174/406 (42%), Gaps = 73/406 (17%)
Query: 15 RIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGA 74
R+R L + +++ ++YWM +R+ N +L +++ + K + + L + +
Sbjct: 9 RVRELDPKPILEEKPYILYWMSMARRLAWNHSLDYSIHLSQKYKKELLIYEPLKMNYPWS 68
Query: 75 KARQLGFMLRGLRLLQRNIEE------TFQILFFLFQGEAEDNIPNFVRECGASLLVTDF 128
R F+L G+ N++E T++ + E+ E A+L++TD
Sbjct: 69 SPRLHKFILDGM---SSNVKEAKKLGLTYRAFVETHENPIEETFEKISSE--AALVITDD 123
Query: 129 SPLREIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYL 188
P + ++ ++ + I VD+++++P+ E +A+ LR +++KL PE +
Sbjct: 124 YPAYIVPELLEQFSKKLKCKLLI--VDSNSIIPLTFYGE-FASAARILRPRVHKLFPE-V 179
Query: 189 IDYPMLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVP--EIGWCESGEDAAMEVLK---- 242
+ +P + + S W L K P +I W E GED ++ K
Sbjct: 180 WKFRSFHKPDKPFREKENS--W-------LEKNPNSPLKKIIWFEGGEDQISKICKNCNF 230
Query: 243 ---------GSKDG----------FLTKRLKNYPTDRNNPLKPRAL--SGLSPYLHFGQI 281
G K G FL + L Y R+NP P S LSPYLHFG I
Sbjct: 231 NFQNILPVPGKKGGREEGIRLLQKFLKRGLSGYAELRSNPRPPEESYSSFLSPYLHFGHI 290
Query: 282 SAQRCALEA-----------------RKARK----LCPEAIDTFLEELIVRRELADNFCF 320
S + E K RK +++FL+ELI R++ +
Sbjct: 291 SQEEIVSEVLNWNLDGPWTPGIIIPENKNRKEGYFHSDPNVNSFLDELITWRDVGFLMFW 350
Query: 321 YQPNY-DSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPV 365
+P++ L +W +K+L H +D R +IYTKEQ E ++T D +
Sbjct: 351 KKPSFRKDLSILPDWIQKNLDFHKNDVRPYIYTKEQLESSKTHDTI 396
>gi|449138593|ref|ZP_21773849.1| deoxyribodipyrimidine photolyase [Rhodopirellula europaea 6C]
gi|448882783|gb|EMB13341.1| deoxyribodipyrimidine photolyase [Rhodopirellula europaea 6C]
Length = 477
Score = 85.5 bits (210), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 101/374 (27%), Positives = 166/374 (44%), Gaps = 51/374 (13%)
Query: 35 MFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQRNIE 94
M +R+ N+AL HA+D+A + P+ + L ++ A R F++ G+R E
Sbjct: 1 MIAQRRLHWNFALQHAIDRAIEFEKPLLIFEPLRVRYQWASDRIHRFIIEGMRDNAAAAE 60
Query: 95 ETFQILFFLFQGEAEDNIPNFVREC-GASLLVTDFSPLREIRRCKDKICNRVSDSVTIHE 153
+ + + + P R A +VTD P + D + +++ + +
Sbjct: 61 SLPVVYYPYVEPKPGAGSPLLHRLAKNACTVVTDEYPCFFLPHMIDAVKDKLPARLEL-- 118
Query: 154 VDAHNVVPVWVASEKLEYSAKTLRGKINK-LLP--EYLI--------DYPMLEQPIEKWT 202
+D++ V+P+ A+EK A + R + K +LP E+L D P L P +
Sbjct: 119 IDSNGVLPL-RAAEKTYTVAHSYRRFMQKNILPALEHLPLANPLAPDDRPALPCPDGESM 177
Query: 203 GTRQSIDWDSII-----AAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDG---------- 247
R+ S + AA L K + E G + D ++ K + G
Sbjct: 178 AERRKKLLPSNVLSKWPAANLEK--LLSEGGLSKIPIDHSVRPSKATPGGTVEGSRRWKE 235
Query: 248 FLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRC--------ALEARKARKL--- 296
FL +L Y DRN+P + A +GLSP+LHFG IS A + K
Sbjct: 236 FLDSKLSQYNDDRNHPDE-HATTGLSPHLHFGHISVHEMVSSLLEHEGWSADQTSKPNGK 294
Query: 297 ------CPEAIDTFLEELIVRRELADNFCFYQPN-YDSLKGAWEWARKSLKDHASDKREH 349
E + L++L+ RE+ N+ F P+ YDSL+ +WA+K+L + D+R H
Sbjct: 295 NHGFWNVGENAEALLDQLLTWREIGFNWSFQNPDTYDSLESLPDWAKKTLAETRDDERPH 354
Query: 350 IYTKEQFEKAQTAD 363
+YT E+FE A+T D
Sbjct: 355 LYTLEEFENAETHD 368
>gi|417305703|ref|ZP_12092653.1| deoxyribodipyrimidine photolyase [Rhodopirellula baltica WH47]
gi|327538009|gb|EGF24703.1| deoxyribodipyrimidine photolyase [Rhodopirellula baltica WH47]
Length = 479
Score = 84.3 bits (207), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 97/377 (25%), Positives = 170/377 (45%), Gaps = 52/377 (13%)
Query: 35 MFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQRNIE 94
M +R+ N+AL HA+D+A + P+ + L ++ A R F++ G+R E
Sbjct: 1 MIAQRRLNWNFALQHAIDRALEFEKPLLIFEPLRVRYQWASDRIHRFIIEGMRDNAAEAE 60
Query: 95 ETFQILFFLFQGEAEDNIPNFVREC-GASLLVTDFSPLREIRRCKDKICNRVSDSVTIHE 153
+ + + + P R A +VTD P + D + +++ + +
Sbjct: 61 SLPVVYYPYVEPKPGVGSPLLHRLAKHACTVVTDEYPCFFLPHMIDAVKDKLPARLEL-- 118
Query: 154 VDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQPIEKWTGTRQSI---DW 210
+D++ ++P+ A+EK A + R + K + L P L P+++ R ++ D
Sbjct: 119 IDSNGILPL-RAAEKTYTVAHSYRRFMQKNILPALEQLP-LANPLDR-NSNRPALPCPDG 175
Query: 211 DSII--------AAVLRKG--AEVPEI----GWCESGEDAAMEVLKGSKDG--------- 247
+S+ + +L K AE+ ++ G E D ++ + + G
Sbjct: 176 ESMAERRKKLLPSKILSKWPVAELEKLLGQDGLSEIPIDHSVRPSQATPGGTAEASRRWQ 235
Query: 248 -FLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRC--------ALEARKARKL-- 296
FL K+L Y DRN+P A +GLSP+LHFG ISA A + K
Sbjct: 236 EFLNKKLSRYNDDRNHP-DEHATTGLSPHLHFGHISAHEMVSSLLDHEGWSADQTSKPNG 294
Query: 297 -------CPEAIDTFLEELIVRRELADNFCFYQPN-YDSLKGAWEWARKSLKDHASDKRE 348
E + L++L+ RE+ N+ F P+ YDSL+ +WA+K+L + D+R
Sbjct: 295 KNHGFWNVGENAEALLDQLLTWREIGFNWSFQNPDTYDSLESLPDWAQKTLNETRDDERP 354
Query: 349 HIYTKEQFEKAQTADPV 365
H+YT +FE A+T D +
Sbjct: 355 HLYTLAEFENAETHDEI 371
>gi|417770573|ref|ZP_12418480.1| FAD binding domain of DNA photolyase [Leptospira interrogans
serovar Pomona str. Pomona]
gi|418682059|ref|ZP_13243279.1| FAD binding domain of DNA photolyase [Leptospira interrogans
serovar Pomona str. Kennewicki LC82-25]
gi|400326069|gb|EJO78338.1| FAD binding domain of DNA photolyase [Leptospira interrogans
serovar Pomona str. Kennewicki LC82-25]
gi|409947500|gb|EKN97497.1| FAD binding domain of DNA photolyase [Leptospira interrogans
serovar Pomona str. Pomona]
gi|455670122|gb|EMF35162.1| FAD binding domain of DNA photolyase [Leptospira interrogans
serovar Pomona str. Fox 32256]
Length = 516
Score = 84.3 bits (207), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 94/398 (23%), Positives = 175/398 (43%), Gaps = 57/398 (14%)
Query: 15 RIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGA 74
R+R +KQ + +++ ++YWM +R+ N +L +++ + K + + L + +
Sbjct: 9 RVREIKQNPILEEKPYILYWMSMARRLVWNHSLDYSIHLSQKYKKELLIYEPLKMNYPWS 68
Query: 75 KARQLGFMLRGLRLLQRNIEET--FQILFFLFQGEAEDNIPNFVRECG--ASLLVTDFSP 130
R F+L G+ NI+E + + F + I + A+L++TD P
Sbjct: 69 SPRLHKFILEGMSY---NIKEAKRLGLTYRAFVETPGNRIEEAFEKISSEAALVITDDYP 125
Query: 131 LREIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPE---- 186
I +++ ++ VD+++++P+ E + +A+ LR +++KL PE
Sbjct: 126 AYIIPELLEQVSKKIK--CKFLAVDSNSIIPLTFYGEFVS-AARILRPRVHKLFPEVWKF 182
Query: 187 ---YLIDYPM-----------LEQPIEKWTGTRQSIDWDSIIAAVLRKGAE-VPEIGWCE 231
+ D P L P++K +D S I + +P + +
Sbjct: 183 RSFHKPDKPFREKGDSWLEKNLNSPLKKIIWFEGDVDQISEICKKCNFNFQNIPPVPGKK 242
Query: 232 SGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRAL--SGLSPYLHFGQISAQRCALE 289
G D +++L+ FL + L Y R+NP P S LS Y+HFG IS + E
Sbjct: 243 GGRDEGIKLLQK----FLKRGLSGYAELRSNPKPPEESYSSFLSSYIHFGHISQEEIVSE 298
Query: 290 A--------------------RKARKLCPEA-IDTFLEELIVRRELADNFCFYQPNY-DS 327
RK P+ +++FL+ELI R++ + +P++
Sbjct: 299 VLNWNLDGSWTPGVIIPENKNRKEGYFHPDPNVNSFLDELITWRDVGFLMFWKKPSFRKD 358
Query: 328 LKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPV 365
L +W +K+L H +D R +IYTKEQ E ++T D +
Sbjct: 359 LSILPDWIQKNLDFHKNDVRPYIYTKEQLENSKTHDVI 396
>gi|302343405|ref|YP_003807934.1| deoxyribodipyrimidine photo-lyase [Desulfarculus baarsii DSM 2075]
gi|301640018|gb|ADK85340.1| Deoxyribodipyrimidine photo-lyase [Desulfarculus baarsii DSM 2075]
Length = 492
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 98/381 (25%), Positives = 154/381 (40%), Gaps = 41/381 (10%)
Query: 15 RIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGA 74
RIR L Q LD V+YWM +R N+ L A A + P+ + L + A
Sbjct: 8 RIRPLNQRPLDPAGDYVLYWMCAQRRTGWNFGLQRAAWLAGELKRPLVILEALRLDYPHA 67
Query: 75 KARQLGFMLRGLRLLQRNIEETFQILFFLFQ---GEAEDNIPNFVRECGASLLVTDFSPL 131
R F+L+G+ + + + + G + + + A +V D P
Sbjct: 68 SERLHCFILQGMAANAAALAGRGALYYPYVEPARGAGKGLLAALAQR--ACAVVADDYPT 125
Query: 132 REIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDY 191
I + + VD+ ++P+ AS+ +A R + K LPE+L
Sbjct: 126 FFI--PAMLAAAAAQCAARLEAVDSCGLLPL-AASDHAFPTAHAFRRFLQKNLPEHLAQP 182
Query: 192 PMLEQP---------IEKWTGTRQSIDWDSIIA--AVLRKGAEVPEIGWCESGEDAAMEV 240
P+ + + +W R W + +A L G + G
Sbjct: 183 PVADPLAGLPAPPPILPRWIIERWPPAWSADLARPQALIAGLAIDHAVGPVVGRVGGAAA 242
Query: 241 LKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISA---------------QR 285
+ FL + L Y RN P + SGLSPYLHFG I+A QR
Sbjct: 243 AGATLARFLGRGLALYDQLRNQPAEDVG-SGLSPYLHFGHIAAHQVFAALADVEGWSPQR 301
Query: 286 CALEARKARK----LCPEAIDTFLEELIVRRELADNFCFYQPNYDS-LKGAWEWARKSLK 340
A+ AR+ L P A + F ++ I REL NFC ++P + L+ +WA ++L
Sbjct: 302 VGGPAKGARQGWWGLSPTA-EAFADQFITWRELGYNFCHHRPGQEGKLESLPDWAGQTLA 360
Query: 341 DHASDKREHIYTKEQFEKAQT 361
HA+D R ++Y E+ E A+T
Sbjct: 361 AHAADPRPYVYDLERLETART 381
>gi|440716313|ref|ZP_20896824.1| deoxyribodipyrimidine photolyase [Rhodopirellula baltica SWK14]
gi|436438659|gb|ELP32184.1| deoxyribodipyrimidine photolyase [Rhodopirellula baltica SWK14]
Length = 479
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 97/377 (25%), Positives = 170/377 (45%), Gaps = 52/377 (13%)
Query: 35 MFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQRNIE 94
M +R+ N+AL HA+D+A + P+ + L ++ A R F++ G+R E
Sbjct: 1 MIAQRRLHWNFALQHAIDRALEFKKPLLIFEPLRVRYQWASDRIHRFIIEGMRDNAAEAE 60
Query: 95 ETFQILFFLFQGEAEDNIPNFVREC-GASLLVTDFSPLREIRRCKDKICNRVSDSVTIHE 153
+ + + + P R A +VTD P + D + +++ + +
Sbjct: 61 SLPVVYYPYVELKPGVGSPLLHRLAKHACTVVTDEYPCFFLPHMIDAVKDKLPARLEL-- 118
Query: 154 VDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQPIEKWTGTRQSI---DW 210
+D++ V+P+ A+EK A + R + K + L P L P+++ R ++ D
Sbjct: 119 IDSNGVLPL-RAAEKTYSVAHSYRRFMQKNILPALEQLP-LANPLDR-NSNRPALPCPDG 175
Query: 211 DSII--------AAVLRK--GAEVPEI----GWCESGEDAAMEVLKGSKDG--------- 247
+S+ + +L K A++ ++ G E D ++ + + G
Sbjct: 176 ESMAERRKKLLPSKILSKWPAADLEKLLGQDGLSEIPIDHSVRPSQATPGGTAEASRRWQ 235
Query: 248 -FLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRC--------ALEARKARKL-- 296
FL K+L Y DRN+P A +GLSP+LHFG ISA A + K
Sbjct: 236 EFLNKKLSRYNDDRNHP-DEHATTGLSPHLHFGHISAHEMVSSLLDHEGWSADQTSKPNG 294
Query: 297 -------CPEAIDTFLEELIVRRELADNFCFYQPN-YDSLKGAWEWARKSLKDHASDKRE 348
E + L++L+ RE+ N+ F P+ YDSL+ +WA+K+L + D+R
Sbjct: 295 KNHGFWNVGENAEALLDQLLTWREIGFNWSFQNPDTYDSLESLPDWAQKTLNETRDDERP 354
Query: 349 HIYTKEQFEKAQTADPV 365
H+YT +FE A+T D +
Sbjct: 355 HLYTLAEFENAETHDEI 371
>gi|417759360|ref|ZP_12407397.1| FAD binding domain of DNA photolyase [Leptospira interrogans str.
2002000624]
gi|417766677|ref|ZP_12414627.1| FAD binding domain of DNA photolyase [Leptospira interrogans
serovar Bulgarica str. Mallika]
gi|417777477|ref|ZP_12425295.1| FAD binding domain of DNA photolyase [Leptospira interrogans str.
2002000621]
gi|417786343|ref|ZP_12434037.1| FAD binding domain of DNA photolyase [Leptospira interrogans str.
C10069]
gi|418669448|ref|ZP_13230830.1| FAD binding domain of DNA photolyase [Leptospira interrogans
serovar Pyrogenes str. 2006006960]
gi|418674168|ref|ZP_13235476.1| FAD binding domain of DNA photolyase [Leptospira interrogans str.
2002000623]
gi|418723082|ref|ZP_13281925.1| FAD binding domain of DNA photolyase [Leptospira interrogans str.
UI 12621]
gi|418733053|ref|ZP_13290420.1| FAD binding domain of DNA photolyase [Leptospira interrogans str.
UI 12758]
gi|421119788|ref|ZP_15580103.1| FAD binding domain of DNA photolyase [Leptospira interrogans str.
Brem 329]
gi|421125489|ref|ZP_15585741.1| FAD binding domain of DNA photolyase [Leptospira interrogans
serovar Grippotyphosa str. 2006006986]
gi|421136582|ref|ZP_15596685.1| FAD binding domain of DNA photolyase [Leptospira interrogans
serovar Grippotyphosa str. Andaman]
gi|400350815|gb|EJP03067.1| FAD binding domain of DNA photolyase [Leptospira interrogans
serovar Bulgarica str. Mallika]
gi|409944835|gb|EKN90415.1| FAD binding domain of DNA photolyase [Leptospira interrogans str.
2002000624]
gi|409950564|gb|EKO05089.1| FAD binding domain of DNA photolyase [Leptospira interrogans str.
C10069]
gi|409963433|gb|EKO27158.1| FAD binding domain of DNA photolyase [Leptospira interrogans str.
UI 12621]
gi|410019278|gb|EKO86100.1| FAD binding domain of DNA photolyase [Leptospira interrogans
serovar Grippotyphosa str. Andaman]
gi|410347340|gb|EKO98248.1| FAD binding domain of DNA photolyase [Leptospira interrogans str.
Brem 329]
gi|410437067|gb|EKP86171.1| FAD binding domain of DNA photolyase [Leptospira interrogans
serovar Grippotyphosa str. 2006006986]
gi|410572717|gb|EKQ35781.1| FAD binding domain of DNA photolyase [Leptospira interrogans str.
2002000621]
gi|410578927|gb|EKQ46780.1| FAD binding domain of DNA photolyase [Leptospira interrogans str.
2002000623]
gi|410754751|gb|EKR16398.1| FAD binding domain of DNA photolyase [Leptospira interrogans
serovar Pyrogenes str. 2006006960]
gi|410773279|gb|EKR53309.1| FAD binding domain of DNA photolyase [Leptospira interrogans str.
UI 12758]
Length = 516
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 93/398 (23%), Positives = 177/398 (44%), Gaps = 57/398 (14%)
Query: 15 RIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGA 74
R+R +KQ + +++ ++YWM +R+ N +L +++ + K + + L + +
Sbjct: 9 RVREIKQNPILEEKPYILYWMSMARRLVWNHSLDYSIHLSQKYKKELLIYEPLKMNYPWS 68
Query: 75 KARQLGFMLRGLRLLQRNIEET--FQILFFLFQGEAEDNIPNFVRECG--ASLLVTDFSP 130
R F+L G+ NI+E + + F + I + A+L++TD P
Sbjct: 69 SPRLHKFILEGMSY---NIKEAKRLGLTYRAFVETPGNRIEEAFEKISSEAALVITDDYP 125
Query: 131 LREIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPE---- 186
I +++ ++ VD+++++P+ E + +A+ LR +++KL PE
Sbjct: 126 AYIIPELLEQVSKKI--KCKFLAVDSNSIIPLTFYGEFVS-AARILRPRVHKLFPEVWKF 182
Query: 187 ---YLIDYPMLEQ-----------PIEKWTGTRQSIDWDSIIAAVLRKGAE-VPEIGWCE 231
+ + P E+ P++K +D S I + +P + +
Sbjct: 183 RSFHKPNKPFREKGDSWLEKNPNSPLKKNIWFEGDVDQISEICKKCNFNFQNIPPVPGKK 242
Query: 232 SGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRA--LSGLSPYLHFGQISAQRCALE 289
G + +++L+ FL + L Y R+NP P S LSPY+HFG IS + E
Sbjct: 243 GGREEGIKLLQ----KFLKRGLSGYAELRSNPKPPEESYSSFLSPYIHFGHISQEEIVSE 298
Query: 290 A--------------------RKARKLCPEA-IDTFLEELIVRRELADNFCFYQPNY-DS 327
RK P+ +++FL+ELI R++ + +P++
Sbjct: 299 VLNWNLDGSWTPGVIIPENKNRKEGYFHPDPNVNSFLDELITWRDVGFLMFWKKPSFRKD 358
Query: 328 LKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPV 365
L +W +K+L H +D R +IYTKEQ E ++T D +
Sbjct: 359 LSILPDWIQKNLDFHKNDVRPYIYTKEQLENSKTHDVI 396
>gi|24215349|ref|NP_712830.1| deoxyribodipyrimidine photolyase [Leptospira interrogans serovar
Lai str. 56601]
gi|45657217|ref|YP_001303.1| deoxyribodipyrimidine photolyase [Leptospira interrogans serovar
Copenhageni str. Fiocruz L1-130]
gi|386074624|ref|YP_005988941.1| deoxyribodipyrimidine photolyase [Leptospira interrogans serovar
Lai str. IPAV]
gi|421084078|ref|ZP_15544942.1| FAD binding domain of DNA photolyase [Leptospira santarosai str.
HAI1594]
gi|421105129|ref|ZP_15565722.1| FAD binding domain of DNA photolyase [Leptospira interrogans
serovar Icterohaemorrhagiae str. Verdun LP]
gi|24196458|gb|AAN49848.1| deoxyribodipyrimidine photolyase [Leptospira interrogans serovar
Lai str. 56601]
gi|45600455|gb|AAS69940.1| deoxyribodipyrimidine photolyase [Leptospira interrogans serovar
Copenhageni str. Fiocruz L1-130]
gi|353458413|gb|AER02958.1| deoxyribodipyrimidine photolyase [Leptospira interrogans serovar
Lai str. IPAV]
gi|410365439|gb|EKP20834.1| FAD binding domain of DNA photolyase [Leptospira interrogans
serovar Icterohaemorrhagiae str. Verdun LP]
gi|410433250|gb|EKP77597.1| FAD binding domain of DNA photolyase [Leptospira santarosai str.
HAI1594]
gi|456988275|gb|EMG23389.1| FAD binding domain of DNA photolyase [Leptospira interrogans
serovar Copenhageni str. LT2050]
Length = 516
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 93/398 (23%), Positives = 177/398 (44%), Gaps = 57/398 (14%)
Query: 15 RIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGA 74
R+R +KQ + +++ ++YWM +R+ N +L +++ + K + + L + +
Sbjct: 9 RVREIKQNPILEEKPYILYWMSMARRLVWNHSLDYSIHLSQKYKKELLIYEPLKMNYPWS 68
Query: 75 KARQLGFMLRGLRLLQRNIEET--FQILFFLFQGEAEDNIPNFVRECG--ASLLVTDFSP 130
R F+L G+ NI+E + + F + I + A+L++TD P
Sbjct: 69 SLRLHKFILEGMSY---NIKEAKRLGLTYRAFVETPGNRIEEAFEKISSEAALVITDDYP 125
Query: 131 LREIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPE---- 186
I +++ ++ VD+++++P+ E + +A+ LR +++KL PE
Sbjct: 126 AYIIPELLEQVSKKI--KCKFLAVDSNSIIPLTFYGEFVS-AARILRPRVHKLFPEVWKF 182
Query: 187 ---YLIDYPMLEQ-----------PIEKWTGTRQSIDWDSIIAAVLRKGAE-VPEIGWCE 231
+ + P E+ P++K +D S I + +P + +
Sbjct: 183 RSFHKPNKPFREKGDSWLEKNPNSPLKKNIWFEGDVDQISEICKKCNFNFQNIPPVPGKK 242
Query: 232 SGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRA--LSGLSPYLHFGQISAQRCALE 289
G + +++L+ FL + L Y R+NP P S LSPY+HFG IS + E
Sbjct: 243 GGREEGIKLLQ----KFLKRGLSGYAELRSNPKPPEESYSSFLSPYIHFGHISQEEIVSE 298
Query: 290 A--------------------RKARKLCPEA-IDTFLEELIVRRELADNFCFYQPNY-DS 327
RK P+ +++FL+ELI R++ + +P++
Sbjct: 299 VLNWNLDGSWTPGVIIPENKNRKEGYFHPDPNVNSFLDELITWRDVGFLMFWKKPSFRKD 358
Query: 328 LKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPV 365
L +W +K+L H +D R +IYTKEQ E ++T D +
Sbjct: 359 LSILPDWIQKNLDFHKNDVRPYIYTKEQLENSKTHDVI 396
>gi|259416145|ref|ZP_05740065.1| deoxyribodipyrimidine photo-lyase type I [Silicibacter sp.
TrichCH4B]
gi|259347584|gb|EEW59361.1| deoxyribodipyrimidine photo-lyase type I [Silicibacter sp.
TrichCH4B]
Length = 474
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 88/301 (29%), Positives = 146/301 (48%), Gaps = 22/301 (7%)
Query: 30 PVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKAR-QLGFMLRGLRL 88
PV++W+ RD R+RDN AL A++ +P+ + + D+ LGA + +LG GL
Sbjct: 6 PVIWWIRRDLRLRDNPALTAALETGGP-IIPLYI-HDPQDEALGAAPKFRLGL---GLER 60
Query: 89 LQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTD--FSPLREIRRCKDKICNRVS 146
+ +E L L +G+A + + ++E GA +V + P R + K + +
Sbjct: 61 FAKTLEGHGSRL-TLRKGDALEVLREVIKESGAGHVVWSRLYDPEAIKRDTEIKEQLKAA 119
Query: 147 DSVTIHEVDAHNVVPVWVASEK--LEYSAKTLRGK-INKLLPEYLIDYPMLEQPIEKWTG 203
D +T+ + W K Y T K + E LID P + W
Sbjct: 120 D-ITVKSTGGRLMFEPWTVETKDGGMYKVYTPFWKAVRDREVEGLIDAPANLPKPDAWPA 178
Query: 204 TRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNP 263
T + D++ I+A +R+GAE+ G+C G+DAA+E L D FL +R++ Y DR+ P
Sbjct: 179 TDELADYN--ISAAMRRGAEI-VAGYCRVGDDAALEQL----DRFLEERVQTYKADRDFP 231
Query: 264 LKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVRRELADNFCFYQP 323
+ A S LS L +G+IS R +A + + + FL+E +V RE A + ++ P
Sbjct: 232 SRA-ATSELSENLAWGEISPHRMWHLGAQAMRDGKQGAEHFLKE-VVWREFAYHLMYHSP 289
Query: 324 N 324
+
Sbjct: 290 H 290
>gi|418708517|ref|ZP_13269320.1| FAD binding domain of DNA photolyase [Leptospira interrogans
serovar Grippotyphosa str. UI 08368]
gi|410771197|gb|EKR46407.1| FAD binding domain of DNA photolyase [Leptospira interrogans
serovar Grippotyphosa str. UI 08368]
gi|456825238|gb|EMF73634.1| FAD binding domain of DNA photolyase [Leptospira interrogans
serovar Canicola str. LT1962]
Length = 516
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 93/398 (23%), Positives = 176/398 (44%), Gaps = 57/398 (14%)
Query: 15 RIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGA 74
R+R +KQ + +++ ++YWM +R+ N +L +++ + K + + L + +
Sbjct: 9 RVREIKQNPILEEKPYILYWMSMARRLVWNHSLDYSIHLSQKYKKELLIYEPLKMNYPWS 68
Query: 75 KARQLGFMLRGLRLLQRNIEET--FQILFFLFQGEAEDNIPNFVRECG--ASLLVTDFSP 130
R F+L G+ NI+E + + F + I + A+L++TD P
Sbjct: 69 SPRLHKFILEGMSY---NIKEAKRLGLTYRAFVETPGNRIEEAFEKISSEAALVITDDYP 125
Query: 131 LREIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPE---- 186
I +++ ++ VD+++++P+ E + +A+ LR +++KL PE
Sbjct: 126 AYIIPELLEQVSKKI--KCKFLAVDSNSIIPLTFYGEFVS-AARILRPRVHKLFPEVWKF 182
Query: 187 ---YLIDYPMLEQ-----------PIEKWTGTRQSIDWDSIIAAVLRKGAE-VPEIGWCE 231
+ + P E+ P +K +D S I + +P + +
Sbjct: 183 RSFHKPNKPFREKGDSWLEKNPNSPFKKNIWFEGDVDQISEICKKCNFNFQNIPPVPGKK 242
Query: 232 SGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRA--LSGLSPYLHFGQISAQRCALE 289
G + +++L+ FL + L Y R+NP P S LSPY+HFG IS + E
Sbjct: 243 GGREEGIKLLQ----KFLKRGLSGYAELRSNPKPPEESYSSFLSPYIHFGHISQEEIVSE 298
Query: 290 A--------------------RKARKLCPEA-IDTFLEELIVRRELADNFCFYQPNY-DS 327
RK P+ +++FL+ELI R++ + +P++
Sbjct: 299 VLNWNLDGSWTPGVIIPENKNRKEGYFHPDPNVNSFLDELITWRDVGFLMFWKKPSFRKD 358
Query: 328 LKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPV 365
L +W +K+L H +D R +IYTKEQ E ++T D +
Sbjct: 359 LSILPDWIQKNLDFHKNDVRPYIYTKEQLENSKTHDVI 396
>gi|384250739|gb|EIE24218.1| Cryptochrome/photolyase FAD-binding domain-containing protein
[Coccomyxa subellipsoidea C-169]
Length = 653
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 100/406 (24%), Positives = 160/406 (39%), Gaps = 70/406 (17%)
Query: 15 RIRVLKQGSLDKKRG---------PVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAF 65
RIR + G+ RG PV+YWM R +N AL A A + VP+ +A
Sbjct: 120 RIRDFRSGNTADWRGAAGSRGDGRPVLYWMRTALRGHENPALDVARAAAERRGVPLHIAA 179
Query: 66 NLFDQFLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQG----EAEDNIPNFVRECGA 121
L R+ F ++GLR Q + + L G ++E +
Sbjct: 180 FLLRSHTHPTERRYSFWMQGLRDTQLELRQQGVELLVYLDGMSGPQSEGWAALTALAAAS 239
Query: 122 SLLVTDFSPLREIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKIN 181
SL++T+ P+ + + + V + VD + P+ + T R
Sbjct: 240 SLVITEEMPVSPYAQWTKDLAAALPPDVAVWAVDTACLYPMRL----------TARAPAK 289
Query: 182 KLLPEYLIDYPMLEQPIEKWTGTRQSIDWDSII--AAVLRKGAE-----------VPE-I 227
+ D P E+ +++ T + DW ++ AA + KG E +PE +
Sbjct: 290 AYIFRSSTDRPRRER-LQRLPYTDGATDWARLLGGAAAVAKGMEELREDPPARGPIPEGL 348
Query: 228 GW-----CESGED----------------AAMEVLKGSKDG------FLTKRLKNYPTDR 260
GW G D A + GS +G F TK L Y R
Sbjct: 349 GWDPLNLSAPGADIAALLAQCDWIDRRVPAVSHMHGGSGEGYARWEAFRTKGLDLYAAHR 408
Query: 261 NNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVRRELADNFCF 320
NN LK +S LS Y H+G +S + A +A AR +++E RE+A FC
Sbjct: 409 NNALKRDGVSRLSAYHHYGMVSPFKVARDALLARS---NGATKYVDEFFTWREVAHAFCL 465
Query: 321 YQ-PNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPV 365
P ++++ +WA+++L H+ D RE + Q E+ T D +
Sbjct: 466 RSWPVLENVQALPQWAQQTLGRHSGDARE-CKSMRQLEEGTTGDHI 510
>gi|418719179|ref|ZP_13278379.1| FAD binding domain of DNA photolyase [Leptospira borgpetersenii
str. UI 09149]
gi|410744332|gb|EKQ93073.1| FAD binding domain of DNA photolyase [Leptospira borgpetersenii
str. UI 09149]
Length = 506
Score = 82.0 bits (201), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 96/404 (23%), Positives = 173/404 (42%), Gaps = 69/404 (17%)
Query: 15 RIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGA 74
R+R L Q + +++ V+YWM +R+ N +L +++ + K + + L + +
Sbjct: 9 RVRELGQNPILEEKPYVLYWMSMARRLAWNHSLDYSIHLSQKYKKELLIYEPLKMDYPWS 68
Query: 75 KARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVREC--GASLLVTDFSPLR 132
R F+L G+ R+ ++ + + F ++I + + A+L+VTD P
Sbjct: 69 SPRLHKFILDGMSYNARDAKKN-GLYYAAFVETPNNSIADVFEKLTENAALVVTDDYPAY 127
Query: 133 EIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEY--LID 190
+ +K+ ++ + VD+++++P+ E +A+ LR ++++L PE
Sbjct: 128 IVPELLEKVSKKIRCKFLV--VDSNSIIPLSFYGE-FASAARILRPRVHRLFPEAWKFRS 184
Query: 191 YPMLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVP--EIGWCESGEDAAMEVLK------ 242
+ E+P R+ D + L K P I W E D E+ K
Sbjct: 185 FHKPEKPF------REKGD------SWLEKNPNSPLKRIVWFEGDADQISEICKNFNFHF 232
Query: 243 -------GSKDG----------FLTKRLKNYPTDRNNPLKPRAL--SGLSPYLHFGQISA 283
G K G FL + L Y R++P P S LSPYL FG IS
Sbjct: 233 QKIPPVPGKKGGREEGIKLLKKFLKRGLSGYAELRSHPKPPEEAYSSFLSPYLRFGHISQ 292
Query: 284 QRCALEA--------------------RKARKLCPEA-IDTFLEELIVRRELADNFCFYQ 322
+ E RK P++ +++FL+ELI R++ + +
Sbjct: 293 EEIVSEVLNWNLNGPWTPGVIIPENKNRKEGYFHPDSNVNSFLDELITWRDVGFLMFWKK 352
Query: 323 PNY-DSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPV 365
P++ L +W +K+L H +D R +IY+KEQ E + T D +
Sbjct: 353 PSFRKDLSILPDWIQKNLDFHKNDVRPYIYSKEQLESSSTHDVI 396
>gi|418698808|ref|ZP_13259778.1| FAD binding domain of DNA photolyase [Leptospira interrogans
serovar Bataviae str. L1111]
gi|410762152|gb|EKR28320.1| FAD binding domain of DNA photolyase [Leptospira interrogans
serovar Bataviae str. L1111]
Length = 516
Score = 82.0 bits (201), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 92/398 (23%), Positives = 177/398 (44%), Gaps = 57/398 (14%)
Query: 15 RIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGA 74
R+R +KQ + +++ ++YWM +R+ N +L +++ + K + + L + +
Sbjct: 9 RVREIKQNPILEEKPYILYWMSMARRLVWNHSLDYSIHLSQKYKKELLIYEPLKMNYPWS 68
Query: 75 KARQLGFMLRGLRLLQRNIEET--FQILFFLFQGEAEDNIPNFVRECG--ASLLVTDFSP 130
R F+L G+ NI+E + + F + I + A+L++TD P
Sbjct: 69 SPRLHKFILEGMSY---NIKEAKRLGLTYRAFVETPGNRIEEAFEKISSEAALVITDDYP 125
Query: 131 LREIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPE---- 186
I +++ ++ VD+++++P+ E + +A+ LR +++KL PE
Sbjct: 126 AYIIPELLEQVSKKIK--CKFLAVDSNSIIPLTFYGEFVS-AARILRPRVHKLFPEVWKF 182
Query: 187 ---YLIDYPMLEQ-----------PIEKWTGTRQSIDWDSIIAAVLRKGAE-VPEIGWCE 231
+ + P E+ P++K ++ S I + +P + +
Sbjct: 183 RSFHKPNKPFREKGDSWLEKNPNSPLKKNIWFEGDVNQISEICKKCNFNFQNIPPVPGKK 242
Query: 232 SGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRAL--SGLSPYLHFGQISAQRCALE 289
G + +++L+ FL + L Y R+NP P S LSPY+HFG IS + E
Sbjct: 243 GGREEGIKLLQK----FLKRGLSGYAELRSNPKPPEESYSSFLSPYIHFGHISQEEIVSE 298
Query: 290 A--------------------RKARKLCPEA-IDTFLEELIVRRELADNFCFYQPNY-DS 327
RK P+ +++FL+ELI R++ + +P++
Sbjct: 299 VLNWNLDGSWTPGVIIPENKNRKEGYFHPDPNVNSFLDELITWRDVGFLMFWKKPSFRKD 358
Query: 328 LKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPV 365
L +W +K+L H +D R +IYTKEQ E ++T D +
Sbjct: 359 LSILPDWIQKNLDFHKNDVRPYIYTKEQLENSKTHDVI 396
>gi|15636683|gb|AAL02137.1| deoxyribodipyrimidine photo-lyase [Branchiostoma belcheri]
Length = 202
Score = 81.6 bits (200), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 41/85 (48%), Positives = 55/85 (64%), Gaps = 1/85 (1%)
Query: 29 GPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRL 88
G +VYWM RDQRV+DNWAL++A A K+ VP+ V F L +FL A R GFML+GL
Sbjct: 119 GGIVYWMSRDQRVQDNWALLYAQQLAMKHQVPLYVCFCLVPKFLEASIRHYGFMLKGLEE 178
Query: 89 LQRNIEETFQILFFLFQGEAEDNIP 113
++R + ++ I F L G A D +P
Sbjct: 179 VEREL-QSLDISFHLLTGYAVDVLP 202
>gi|86159449|ref|YP_466234.1| deoxyribodipyrimidine photo-lyase type II [Anaeromyxobacter
dehalogenans 2CP-C]
gi|85775960|gb|ABC82797.1| Deoxyribodipyrimidine photo-lyase type II [Anaeromyxobacter
dehalogenans 2CP-C]
Length = 490
Score = 81.6 bits (200), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 99/390 (25%), Positives = 144/390 (36%), Gaps = 53/390 (13%)
Query: 15 RIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGA 74
RIR L L +R V++WM +R R N AL A + PV V L + A
Sbjct: 11 RIRALNAAPLRPERAFVLHWMTSARRTRSNPALERAAELGRALGRPVLVLEPLRCGYPHA 70
Query: 75 KARQLGFMLRGLR-----LLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFS 129
R F+L G+R L R + + GE D + + + +++ DF
Sbjct: 71 SDRLHAFLLEGMRDNAAALAGRAL---YHPWVERRAGEG-DGLLDALAARACAVIADDF- 125
Query: 130 PLREIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYL- 188
P R+ V + VDA VVP +A + +A R + + LP +L
Sbjct: 126 PTGFPAAAIGAAAARLD--VRLEAVDASCVVPFRLAGKDFP-TAHAYRRHLQRALPAWLD 182
Query: 189 ---IDYPMLEQPIEKWTGTRQSIDWDSIIAAVLRKGA------------EVPEIGWCESG 233
+ P+ P I A VP G G
Sbjct: 183 RLPAEDPLAGVPPPGGASVPAEIRRRWPAARAAELARPAALAAALPIDHRVPPAG--RGG 240
Query: 234 EDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKA 293
AA L FL L Y RN P + R SGLSP+LHFG + + +
Sbjct: 241 SVAARRRLSA----FLRDGLDAYAERRNAPDEARGASGLSPWLHFGHLGSFEILRAVLRR 296
Query: 294 RKLCPEAI------------------DTFLEELIVRRELADNFCFYQPNYDSLKGAWEWA 335
P + + FL++L+ RELA C + P + + WA
Sbjct: 297 EGWTPPPVAAPARGARAGWWGLSASAEAFLDQLLTWRELAFVTCAHVPEHRAYASLPAWA 356
Query: 336 RKSLKDHASDKREHIYTKEQFEKAQTADPV 365
R +L HA+D R +Y + E A+T DP+
Sbjct: 357 RATLARHAADPRPAVYARAALEAAETHDPL 386
>gi|255671724|gb|ACU26482.1| deoxyribodipyrimidine photolyase [uncultured bacterium
HF186_25m_13D19]
Length = 459
Score = 81.6 bits (200), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 87/360 (24%), Positives = 150/360 (41%), Gaps = 37/360 (10%)
Query: 35 MFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQRNIE 94
M +R DN+ L HA+ A VP+ V L + A R F+L G+R +
Sbjct: 1 MVSARRTTDNFGLQHALYHAETLGVPLVVFEPLRVGYRWASERFHAFVLEGMRDNAEAFD 60
Query: 95 ETFQILFFLFQGEAEDNIPNFVRECGAS---LLVTDFSPLREIRRCKDKICNRVSDSVTI 151
+ + + E E + + E A+ ++V+D P + R DK R+ V +
Sbjct: 61 GVAGVTYLPYV-EPEAGAGSGLLEALAAQACMVVSDHFPCFFVPRMVDKAAKRLDVQVDV 119
Query: 152 HEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQPIEKWTGTRQSIDWD 211
VD++ ++P++ A + +A + R ++K + E+L + P E + D
Sbjct: 120 --VDSNGILPLFAAPREFT-TAHSFRRHVHKNVLEHLAEMPEAEPLASAELPPAPARDAL 176
Query: 212 SII--AAVLRKGAEVPEIGWCESGEDAAMEVLKGSK-------DGFLTKRLKNYPTDRNN 262
+I AA +GA + +G + D FL ++L Y N
Sbjct: 177 NIAPWAACTGEGALNVTLSALPIDHSVTPVSTRGGRQEAWRRLDAFLGRQLNAY--GERN 234
Query: 263 PLKPRALSGLSPYLHFGQISAQRCALEARKARKLCP------------------EAIDTF 304
++ +GLSP+LHFG I A E + + P E ++F
Sbjct: 235 QVERDIGTGLSPHLHFGHIGAHTILRELIERERWSPDQVAPKPTGSRAGWWGMSEGAESF 294
Query: 305 LEELIVRRELADNFCFYQ-PNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTAD 363
L++++ REL FC + +YD + WA +L+ HA D+R +Y E + +T D
Sbjct: 295 LDQVLTWRELGYTFCHVRWRDYDRFESLPPWALTTLEAHARDRRPVLYDFEALDAGKTHD 354
>gi|421118158|ref|ZP_15578508.1| FAD binding domain of DNA photolyase [Leptospira interrogans
serovar Canicola str. Fiocruz LV133]
gi|410010368|gb|EKO68509.1| FAD binding domain of DNA photolyase [Leptospira interrogans
serovar Canicola str. Fiocruz LV133]
Length = 516
Score = 81.6 bits (200), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 97/404 (24%), Positives = 175/404 (43%), Gaps = 69/404 (17%)
Query: 15 RIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGA 74
R+R +KQ + +++ ++YWM +R+ N +L +++ + K + + L + +
Sbjct: 9 RVREIKQNPILEEKPYILYWMSMARRLVWNHSLDYSIHLSQKYKKELLIYEPLKMNYPWS 68
Query: 75 KARQLGFMLRGLRLLQRNIEET--FQILFFLFQGEAEDNIPNFVRECG--ASLLVTDFSP 130
R F+L G+ NI+E + + F + I + A+L++TD P
Sbjct: 69 SPRLHKFILEGMSY---NIKEAKRLGLTYRAFVETPGNRIEEAFEKISSEAALVITDDYP 125
Query: 131 LREIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLID 190
I +++ ++ VD+++++P+ E + +A+ LR +++KL PE +
Sbjct: 126 AYIIPELLEQVSKKI--KCKFLAVDSNSIIPLTFYGEFVS-AARILRPRVHKLFPE-VWK 181
Query: 191 YPMLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVP--EIGWCESGEDAAMEVLK------ 242
+ +P + + R+ D + L K P + W E D E+ K
Sbjct: 182 FRSFHKPNKPF---REKGD------SWLEKNPNSPLKKNIWFEGDVDQISEICKKCNFNF 232
Query: 243 -------GSKDG----------FLTKRLKNYPTDRNNPLKPRA--LSGLSPYLHFGQISA 283
G K G FL + L Y R+NP P S LSPY+HFG IS
Sbjct: 233 QNILPVPGKKGGREEGIKLLQKFLKRGLSGYAELRSNPKPPEESYSSFLSPYIHFGHISQ 292
Query: 284 QRCALEA--------------------RKARKLCPEA-IDTFLEELIVRRELADNFCFYQ 322
+ E RK P+ +++FL+ELI R++ + +
Sbjct: 293 EEIVSEVLNWNLDGSWTPGVIIPENKNRKEGYFHPDPNVNSFLDELITWRDVGFLMFWKK 352
Query: 323 PNY-DSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPV 365
P++ L +W +K+L H +D R +IYTKEQ E ++T D +
Sbjct: 353 PSFRKDLSILPDWIQKNLDFHKNDVRPYIYTKEQLENSKTHDVI 396
>gi|418737232|ref|ZP_13293630.1| putative deoxyribodipyrimidine photo-lyase [Leptospira
borgpetersenii serovar Castellonis str. 200801910]
gi|410747391|gb|EKR00297.1| putative deoxyribodipyrimidine photo-lyase [Leptospira
borgpetersenii serovar Castellonis str. 200801910]
Length = 506
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 89/396 (22%), Positives = 176/396 (44%), Gaps = 53/396 (13%)
Query: 15 RIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGA 74
R+R L Q + +++ V+YWM +R+ N +L +++ + K + + L + +
Sbjct: 9 RVRELGQNPILEEKPYVLYWMSMARRLAWNHSLDYSIHLSQKYKKELLIYEPLKMDYPWS 68
Query: 75 KARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVREC--GASLLVTDFSPLR 132
R F+L G+ R+ ++ + + F + I + + ++L+VTD P
Sbjct: 69 SPRLHKFILDGMSYNARDAKKN-GLYYAAFVETPNNPIADVFEKLTENSALVVTDDYPAY 127
Query: 133 EIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYL---- 188
+ +K+ ++ + VD+++++P+ E + +A+ LR ++++L PE
Sbjct: 128 IVPELLEKVSKKIRCKFLV--VDSNSIIPLSFYGEFVS-AARILRPRVHRLFPEAWKFRS 184
Query: 189 ---IDYPMLEQ-----------PIEKWTGTRQSIDWDSIIAAVLR-KGAEVPEIGWCESG 233
+ P E+ P+++ +D S I ++P + + G
Sbjct: 185 SSKPEKPFREKGDSWLEKNPNSPLKRIVWFEGDVDQISEICKNFNFHFQKIPPVPGKKGG 244
Query: 234 EDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRAL--SGLSPYLHFGQISAQRCALEA- 290
+ +++LK FL + L Y R++P P S LSPYL FG IS + E
Sbjct: 245 REEGIKLLK----KFLKRGLSGYAELRSHPKPPEEAYSSFLSPYLRFGHISQEEIVSEVL 300
Query: 291 -------------------RKARKLCPEA-IDTFLEELIVRRELADNFCFYQPNY-DSLK 329
RK P++ +++FL+ELI R++ + +P++ L
Sbjct: 301 NWNLNGPWTPGVIIPENKNRKEGYFHPDSNVNSFLDELITWRDVGFLMFWKKPSFRKDLS 360
Query: 330 GAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPV 365
+W +K+L H +D R +IY+KEQ E + T D +
Sbjct: 361 ILPDWIQKNLDFHKNDVRPYIYSKEQLESSSTHDVI 396
>gi|254476074|ref|ZP_05089460.1| deoxyribodipyrimidine photolyase [Ruegeria sp. R11]
gi|214030317|gb|EEB71152.1| deoxyribodipyrimidine photolyase [Ruegeria sp. R11]
Length = 478
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 90/304 (29%), Positives = 136/304 (44%), Gaps = 28/304 (9%)
Query: 30 PVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKAR-QLGFMLRGLRL 88
PV++W+ RD R+ DN AL AVD + +PV + F+ D+ LGA R +LG GL
Sbjct: 10 PVIWWIRRDLRLSDNAALTAAVD-SGAPVLPVFI-FDSQDEDLGAAPRFRLGL---GLEH 64
Query: 89 LQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLL--VTDFSPLREIRRCKDKICNRV- 145
L + +E L L +G A + + ++E GA + + P R +D +
Sbjct: 65 LAQRLERLGSRL-ILRRGSALQVLQDLLKETGAQAVHWTRAYDP---ASRARDTLIKETL 120
Query: 146 -SDSVTIHEVDAHNVVPVWVASEKLE--YSAKT--LRGKINKLLPEYLIDYPMLEQPIEK 200
S V H + + W K Y T R + +P L+ + P E+
Sbjct: 121 KSQGVAAHSYSGNLLFEPWTVETKTGGMYRVYTPFWRAVRGRDVPGLLVAPGTIPAP-EQ 179
Query: 201 WTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLKNYPTDR 260
W + Q W +AA +R+GA V C GE+AA + L D F+ + Y R
Sbjct: 180 WPNSDQLDTWK--LAAAMRRGAPVLAAH-CRVGEEAAQDRL----DEFIETGIARYQDLR 232
Query: 261 NNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVRRELADNFCF 320
+ P SGLS L +G+IS QR +A +TFL+E +V RE A + F
Sbjct: 233 DLPAV-DGTSGLSENLAWGEISPQRMWHRGAEAMAQGAAGAETFLKE-VVWREFAYHLMF 290
Query: 321 YQPN 324
+ P+
Sbjct: 291 HTPH 294
>gi|421092949|ref|ZP_15553677.1| FAD binding domain of DNA photolyase [Leptospira borgpetersenii
str. 200801926]
gi|410364325|gb|EKP15350.1| FAD binding domain of DNA photolyase [Leptospira borgpetersenii
str. 200801926]
gi|456890517|gb|EMG01331.1| FAD binding domain of DNA photolyase [Leptospira borgpetersenii
str. 200701203]
Length = 506
Score = 78.6 bits (192), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 95/404 (23%), Positives = 172/404 (42%), Gaps = 69/404 (17%)
Query: 15 RIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGA 74
R+R L Q + +++ V+YWM +R+ N +L +++ + K + + L + +
Sbjct: 9 RVRELGQNPILEEKPYVLYWMSMARRLAWNHSLDYSIHLSQKYKKELLIYEPLKMDYPWS 68
Query: 75 KARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVREC--GASLLVTDFSPLR 132
R F+L G+ R+ ++ + + F + I + + ++L+VTD P
Sbjct: 69 SPRLHKFILDGMSYNARDAKKN-GLYYAAFVETPNNPIADVFEKLTENSALVVTDDYPAY 127
Query: 133 EIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEY--LID 190
+ +K+ ++ + VD+++++P+ E + +A+ LR ++++L PE
Sbjct: 128 IVPELLEKVSKKIRCKFLV--VDSNSIIPLSFYGEFVS-AARILRPRVHRLFPEAWKFRS 184
Query: 191 YPMLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVP--EIGWCESGEDAAMEVLK------ 242
E+P R+ D + L K P I W E D E+ K
Sbjct: 185 SSKPEKPF------REKGD------SWLEKNPNSPLKRIVWFEGDADQISEICKNFNFHF 232
Query: 243 -------GSKDG----------FLTKRLKNYPTDRNNPLKPRAL--SGLSPYLHFGQISA 283
G K G FL + L Y R++P P S LSPYL FG IS
Sbjct: 233 QKIPPVPGKKGGREEGIKLLKKFLKRGLSGYAELRSHPKPPEEAYSSFLSPYLRFGHISQ 292
Query: 284 QRCALEA--------------------RKARKLCPEA-IDTFLEELIVRRELADNFCFYQ 322
+ E RK P++ +++FL+ELI R++ + +
Sbjct: 293 EEIVSEVLNWNLNGPWTPGVIIPENKNRKEGYFHPDSNVNSFLDELITWRDVGFLMFWKK 352
Query: 323 PNY-DSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPV 365
P++ L +W +K+L H +D R +IY+KEQ E + T D +
Sbjct: 353 PSFRKDLSILPDWIQKNLDFHKNDVRPYIYSKEQLESSSTHDVI 396
>gi|418690299|ref|ZP_13251415.1| FAD binding domain of DNA photolyase [Leptospira interrogans str.
FPW2026]
gi|418713632|ref|ZP_13274356.1| FAD binding domain of DNA photolyase [Leptospira interrogans str.
UI 08452]
gi|400360484|gb|EJP16456.1| FAD binding domain of DNA photolyase [Leptospira interrogans str.
FPW2026]
gi|410789792|gb|EKR83489.1| FAD binding domain of DNA photolyase [Leptospira interrogans str.
UI 08452]
Length = 516
Score = 78.2 bits (191), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 96/404 (23%), Positives = 174/404 (43%), Gaps = 69/404 (17%)
Query: 15 RIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGA 74
R+R +KQ + +++ ++YWM +R+ N +L +++ + K + + L + +
Sbjct: 9 RVREIKQNPILEEKPYILYWMSMARRLVWNHSLDYSIHLSQKYKKELLIYEPLKMNYPWS 68
Query: 75 KARQLGFMLRGLRLLQRNIEET--FQILFFLFQGEAEDNIPNFVRECG--ASLLVTDFSP 130
R F+L G+ NI+E + + F + I + A+L++TD P
Sbjct: 69 SPRLHKFILEGMSY---NIKEAKRLGLTYRAFVETPGNRIEEAFEKISSEAALVITDDYP 125
Query: 131 LREIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLID 190
I +++ ++ VD+++++P+ E + +A+ LR +++KL PE +
Sbjct: 126 AYIIPELLEQVSKKI--KCKFLAVDSNSIIPLTFYGEFVS-AARILRPRVHKLFPE-VWK 181
Query: 191 YPMLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVP--EIGWCESGEDAAMEVLK------ 242
+ +P + + R+ D + L K P + W E D E+ K
Sbjct: 182 FRSFHKPNKPF---REKGD------SWLEKNPNSPLKKNIWFEGDVDQISEICKKCNFNF 232
Query: 243 -------GSKDG----------FLTKRLKNYPTDRNNPLKPRA--LSGLSPYLHFGQISA 283
G K G FL + L Y R+NP P S LS Y+HFG IS
Sbjct: 233 QNILPVPGKKGGREEGIKLLQKFLKRGLSGYAELRSNPKPPEESYSSFLSSYIHFGHISQ 292
Query: 284 QRCALEA--------------------RKARKLCPEA-IDTFLEELIVRRELADNFCFYQ 322
+ E RK P+ +++FL+ELI R++ + +
Sbjct: 293 EEIVSEVLNWNLDGSWTPGVIIPENKNRKEGYFHPDPNVNSFLDELITWRDVGFLMFWKK 352
Query: 323 PNY-DSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPV 365
P++ L +W +K+L H +D R +IYTKEQ E ++T D +
Sbjct: 353 PSFRKDLSILPDWIQKNLDFHKNDVRPYIYTKEQLENSKTHDVI 396
>gi|168702415|ref|ZP_02734692.1| deoxyribodipyrimidine photolyase [Gemmata obscuriglobus UQM 2246]
Length = 524
Score = 78.2 bits (191), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 112/422 (26%), Positives = 172/422 (40%), Gaps = 85/422 (20%)
Query: 15 RIRVLKQGSLDKKRGPVVYW--MFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFL 72
RIR + V+YW MFR R+ N AL HA+ A ++ P+ V L +
Sbjct: 5 RIRFANAARPNPNGRYVLYWPQMFR--RLHSNHALDHALKLAGEHKKPLVVYEGLKLNYP 62
Query: 73 GAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECG--ASLLVTDFSP 130
A AR F+L+G+R R ++ + ++ F +D V A +VTD P
Sbjct: 63 WANARHHTFILQGMRDNARAAQK-LGLAYWPFVETPDDPGRGLVARLSKDAVCVVTDDYP 121
Query: 131 LREIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEY--- 187
+ + +++ + + VD +VVP+ + +A LR +I+KL E
Sbjct: 122 AYIVPAHNRALADKIDVPLVL--VDGSSVVPLSRLGAPVA-AAAHLRPRIHKLFAEAWRH 178
Query: 188 ----LIDYP-----MLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAM 238
D P L P E W T Q I + A L VP + G A
Sbjct: 179 RAKNAPDVPKVARSTLAPPFEPWDAT-QDI---AKFVAGLPIDQSVPAVAGATGGAAAGT 234
Query: 239 EVLKGSKDGFLTKRLKNYPTDRNNPLKP--RALSGLSPYLHFGQIS----AQRCALEARK 292
L + F++ +L Y +RN P P A S LS YLH+G IS Q ++
Sbjct: 235 AAL----EAFVSDKLPRYSEERNAPDDPAKSAASALSAYLHYGHISIEQVTQAVLGDSWS 290
Query: 293 ARKLCPEA------------IDTFLEELIVRRELADNFCFY------------------- 321
+++ P+ ++ FL+E I R++ ++ F
Sbjct: 291 EQEINPKTRNKDDFFCRDPNVNDFLDEAITWRDVGYHWHFRRNLECDNRDAELKNVSWSG 350
Query: 322 -------QPNYDSLKGAW-----------EWARKSLKDHASDKREHIYTKEQFEKAQTAD 363
Q N++++ A EWAR SLK HA D REHIY+ +FE A+T D
Sbjct: 351 ASSSAVPQFNFETMDFASGGELTLDVVLPEWARASLKKHAGDPREHIYSLGEFEGARTHD 410
Query: 364 PV 365
P+
Sbjct: 411 PL 412
>gi|418704527|ref|ZP_13265400.1| FAD binding domain of DNA photolyase [Leptospira interrogans
serovar Hebdomadis str. R499]
gi|410765923|gb|EKR36617.1| FAD binding domain of DNA photolyase [Leptospira interrogans
serovar Hebdomadis str. R499]
Length = 516
Score = 78.2 bits (191), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 96/404 (23%), Positives = 174/404 (43%), Gaps = 69/404 (17%)
Query: 15 RIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGA 74
R+R +KQ + +++ ++YWM +R+ N +L +++ + K + + L + +
Sbjct: 9 RVREIKQNPILEEKPYILYWMSMARRLVWNHSLDYSIHLSQKYKKELLIYEPLKMNYPWS 68
Query: 75 KARQLGFMLRGLRLLQRNIEET--FQILFFLFQGEAEDNIPNFVRECG--ASLLVTDFSP 130
R F+L G+ NI+E + + F + I + A+L++TD P
Sbjct: 69 SPRLHKFILEGMSY---NIKEAKRLGLTYRAFVETPGNRIEEAFEKISSEAALVITDDYP 125
Query: 131 LREIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLID 190
I +++ ++ VD+++++P+ E + +A+ LR +++KL PE +
Sbjct: 126 AYIIPELLEQVSKKI--KCKFLAVDSNSIIPLTFYGEFVS-AARILRPRVHKLFPE-VWK 181
Query: 191 YPMLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVP--EIGWCESGEDAAMEVLK------ 242
+ +P + + R+ D + L K P + W E D E+ K
Sbjct: 182 FRSFHKPNKPF---REKGD------SWLEKNPNSPLKKNIWFEGDVDQISEICKKCNFNF 232
Query: 243 -------GSKDG----------FLTKRLKNYPTDRNNPLKPRA--LSGLSPYLHFGQISA 283
G K G FL + L Y R+NP P S LS Y+HFG IS
Sbjct: 233 QNILPVPGKKGGREEGIKLLQKFLKRGLSGYAELRSNPKPPEESYSSFLSSYIHFGHISQ 292
Query: 284 QRCALEA--------------------RKARKLCPEA-IDTFLEELIVRRELADNFCFYQ 322
+ E RK P+ +++FL+ELI R++ + +
Sbjct: 293 EEIVSEVLNWNLDGSWTPGVIIPENKNRKEGYFHPDPNVNSFLDELITWRDVGFLMFWKK 352
Query: 323 PNY-DSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPV 365
P++ L +W +K+L H +D R +IYTKEQ E ++T D +
Sbjct: 353 PSFRKDLSILPDWIQKNLDFHKNDVRPYIYTKEQLENSKTHDVI 396
>gi|408792497|ref|ZP_11204107.1| putative deoxyribodipyrimidine photo-lyase [Leptospira meyeri
serovar Hardjo str. Went 5]
gi|408463907|gb|EKJ87632.1| putative deoxyribodipyrimidine photo-lyase [Leptospira meyeri
serovar Hardjo str. Went 5]
Length = 472
Score = 78.2 bits (191), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 92/364 (25%), Positives = 161/364 (44%), Gaps = 51/364 (14%)
Query: 39 QRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQRNIEETFQ 98
+R N + AV A + + V L + + R F++ G+ Q +E
Sbjct: 5 RRFDSNHSFSFAVHLAKEQKKELIVYEGLRSDYPWSSERIHKFIIEGMYDNQTRADE-LG 63
Query: 99 ILFFLFQGEAEDNIPNFVRECG--ASLLVTDFSPLREIRRCKDKICNRVSDSVTIHEVDA 156
I ++ F ++ ++E A+ +VTD P I K+ +++ + VD+
Sbjct: 64 INYWPFIESKKNPARGILKELSKNAAAIVTDDFPCFIIPEQTKKLAEKIN--CPLFAVDS 121
Query: 157 HNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQP---IEKWTGTRQSI----- 208
++++P + EK +A+ LR I+K E+L P P E G Q+
Sbjct: 122 NSLIP-FSRFEKEASAARILRIWIHK---EFLKGIPERANPNWKKEDLEGLHQNSKPPKG 177
Query: 209 -----DWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNP 263
+ ++ + + K +P + G + A+++LK F++K+L +Y T R+ P
Sbjct: 178 FGLPKELNTFLNSFDFKNNVIPAKD-VKGGRNEALKILKT----FVSKKLMDYATGRSQP 232
Query: 264 LKPR--ALSGLSPYLHFGQISAQ---RCALEARKARKLCPE------------------A 300
P A SGLSPYLHFG I + + L+ K PE +
Sbjct: 233 NPPEFTATSGLSPYLHFGHIGIEEIFQSVLDTSSKGKWNPERMSHQKPGDREHFYSESTS 292
Query: 301 IDTFLEELIVRRELADNFCFYQPNYD-SLKGAWEWARKSLKDHASDKREHIYTKEQFEKA 359
+ FL+ELI R++ F + + + +L +W + + K H SD RE++Y+ EQFE A
Sbjct: 293 ANHFLDELITWRDIGYLFFWKSKSQNINLDNLPDWVKTNFKKHKSDTREYLYSLEQFESA 352
Query: 360 QTAD 363
+T D
Sbjct: 353 KTHD 356
>gi|398336551|ref|ZP_10521256.1| deoxyribodipyrimidine photolyase [Leptospira kmetyi serovar
Malaysia str. Bejo-Iso9]
Length = 511
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 100/409 (24%), Positives = 182/409 (44%), Gaps = 79/409 (19%)
Query: 15 RIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGA 74
R++ L Q + +++ ++YWM +R+ N +L +A+ + K + + + + +
Sbjct: 9 RVKDLNQKPILEEKPYLLYWMSMARRLAWNHSLDYAIHLSKKYKKELLIYEPVKMDYPWS 68
Query: 75 KARQLGFMLRGLRLLQRNIEET--FQILFFLFQGEAEDNIPNFVRECG--ASLLVTDFSP 130
R F+L G+ N +E +++ F ++ I + + ASL+VTD P
Sbjct: 69 SPRFHKFILEGM---ASNAKEAKKLGLIYRAFVETPDNPISEVLGKIASNASLIVTDDYP 125
Query: 131 LREIRRCKDKICNRVSDSV--TIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPE-- 186
I ++ RVS+ V + VD+++++P+ + E +A+ LR +++KL PE
Sbjct: 126 AYII----PEMLERVSEIVECKLLAVDSNSIIPLSLYGE-FASAARILRPRVHKLFPEAW 180
Query: 187 ------------------YLIDYPMLEQPIEK---WTGTRQSID-----WDSIIAAVLRK 220
+L++ P P++K + G SID + I + VL
Sbjct: 181 KFRSSSKPEKPHREKENSWLLENP--NSPLKKISWFDGNPDSIDPICKKCNFIFSDVLPV 238
Query: 221 GAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPR--ALSGLSPYLHF 278
++ G + +++L FL + L Y R+ P P+ S LSPYLHF
Sbjct: 239 EGKI-------GGREEGLKLL----GNFLKRGLAGYAELRSQPKSPKDSYSSLLSPYLHF 287
Query: 279 GQISAQRCA-------LEA-------------RKARKLCP-EAIDTFLEELIVRRELADN 317
G IS + LE RK P + +++FL+EL+ R++
Sbjct: 288 GHISQEEVVSAVLDWELEEPWNPGVIVPENKNRKEGYFHPNDNVNSFLDELVTWRDVGFL 347
Query: 318 FCFYQPNY-DSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPV 365
+ P++ L+ +W +K+L H D R ++YTK+Q E A T D V
Sbjct: 348 MFWKNPSFRKDLRILPDWIQKNLDFHGRDSRPYLYTKDQLENAVTHDAV 396
>gi|194336953|ref|YP_002018747.1| DNA photolyase, class 2 [Pelodictyon phaeoclathratiforme BU-1]
gi|194309430|gb|ACF44130.1| DNA photolyase, class 2 [Pelodictyon phaeoclathratiforme BU-1]
Length = 104
Score = 74.7 bits (182), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 42/97 (43%), Positives = 56/97 (57%), Gaps = 3/97 (3%)
Query: 11 VQPGRIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQ 70
+ P RIR+L + G V+YWM RDQRVR NWAL+ A +A P+ V F L
Sbjct: 2 IDPRRIRLLNEKH--DGEGAVIYWMSRDQRVRHNWALLFARRKAELLQQPLVVLFTLAPT 59
Query: 71 FLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGE 107
FLGA R FML+GLR ++ ++ +T I F L Q +
Sbjct: 60 FLGAPLRHYDFMLKGLREVEADL-KTLNIPFLLLQSQ 95
>gi|70939369|ref|XP_740236.1| hypothetical protein [Plasmodium chabaudi chabaudi]
gi|56517812|emb|CAH84909.1| hypothetical protein PC301304.00.0 [Plasmodium chabaudi chabaudi]
Length = 204
Score = 74.7 bits (182), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 52/175 (29%), Positives = 91/175 (52%), Gaps = 13/175 (7%)
Query: 28 RGPVVYWMFRDQRVRDNWALIHAVDQANKN--NVPVAVAFNLFDQFLGAKARQLGFMLRG 85
+ V+ + RD R+ DNW++I+A D A KN N+ N +QF R + L+
Sbjct: 30 KKNVLLLLTRDFRIADNWSIIYAHDLAKKNKCNLLACTYINRKEQF---TERHINIKLKV 86
Query: 86 LRLLQRNIEETFQIL---FFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKIC 142
L+ N+EE F+ L F++ D F+R +V DF PL ++ + +
Sbjct: 87 LK----NLEEEFKKLNIPFYVIPIFMIDEFMEFLRIQEIKTVVCDFHPLEYQKQFVENLV 142
Query: 143 NRVSDS-VTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQ 196
+ + + + +VD+HN++P+W+ S+ E S +T++ KI L +LI+Y LE+
Sbjct: 143 HMSNKKKIKVLQVDSHNIIPLWMTSKMEESSTRTIKPKIQAHLSSFLIEYIKLER 197
>gi|149924015|ref|ZP_01912399.1| deoxyribodipyrimidine photolyase [Plesiocystis pacifica SIR-1]
gi|149815144|gb|EDM74696.1| deoxyribodipyrimidine photolyase [Plesiocystis pacifica SIR-1]
Length = 229
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 44/122 (36%), Positives = 60/122 (49%), Gaps = 27/122 (22%)
Query: 268 ALSGLSPYLHFGQISAQRCALEARKARKLCP--------------------EAIDTFLEE 307
A SGLSP+LHFGQ+ A + +A P E+ + FL+E
Sbjct: 2 ASSGLSPWLHFGQVGAHQVLHAVLRAEDWSPALLGEAKALRGSRRGWWGLSESAEGFLDE 61
Query: 308 LIVRRELADNFCFYQPN----YDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTAD 363
L++ REL FC++ P+ Y SL EWAR +L+DH D R YT Q + AQT D
Sbjct: 62 LVIWRELGQVFCWHHPDAYLRYGSLP---EWARTTLEDHREDDRPSPYTLAQLDGAQTHD 118
Query: 364 PV 365
+
Sbjct: 119 EI 120
>gi|399992584|ref|YP_006572824.1| deoxyribodipyrimidine photo-lyase PhrB [Phaeobacter gallaeciensis
DSM 17395 = CIP 105210]
gi|398657139|gb|AFO91105.1| deoxyribodipyrimidine photo-lyase PhrB [Phaeobacter gallaeciensis
DSM 17395 = CIP 105210]
Length = 479
Score = 71.2 bits (173), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 91/333 (27%), Positives = 139/333 (41%), Gaps = 42/333 (12%)
Query: 30 PVVYWMFRDQRVRDNWALIHAVDQANKNNVPV--AVAFNLFDQFLGAKAR-QLGFMLRGL 86
P+++W+ RD R+ DN A+ A VPV F D+ LGA R +LG GL
Sbjct: 10 PIIWWVRRDLRLADN----PALAAAVAAGVPVIPVFIFETLDEDLGAAPRFRLGL---GL 62
Query: 87 RLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLL--VTDFSPLREIRRCKDKICNR 144
L + +E+ L L +G A++ + + E GA + + P + I R
Sbjct: 63 AHLAKELEQRGARLI-LRRGPAQEVLTQLITETGAGAVHWTRAYDP-QAIARDTGIKEQL 120
Query: 145 VSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEY-----------LIDYPM 193
+ H + W + +T G + ++ Y LI P
Sbjct: 121 KGQGIAAKSFGGHLLFEPW--------TVETKTGGMYRVYSPYWKSVRDRDVDGLIAAPS 172
Query: 194 LEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRL 253
W + W +AA +R+GA+V +C GEDAA E L FL R+
Sbjct: 173 RIPAPAHWPTSDDLDSWQ--MAAAMRRGADV-VAQYCRVGEDAAQERLAE----FLDTRV 225
Query: 254 KNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVRRE 313
+Y DR+ P A SGLS L +G+IS +R +AR+ + FL+E IV RE
Sbjct: 226 ADYKQDRDFPAV-DATSGLSENLAWGEISPRRMWHHGLEARRAGKSGAEHFLKE-IVWRE 283
Query: 314 LADNFCFYQPNYDSLKGAWEWARKSLKDHASDK 346
A + F+ P+ + EW + + DK
Sbjct: 284 FAYHLMFHTPHILTRNWRPEWEHFNWSERDDDK 316
>gi|162454692|ref|YP_001617059.1| hypothetical protein sce6412 [Sorangium cellulosum So ce56]
gi|161165274|emb|CAN96579.1| phr [Sorangium cellulosum So ce56]
Length = 508
Score = 67.8 bits (164), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 89/387 (22%), Positives = 156/387 (40%), Gaps = 64/387 (16%)
Query: 31 VVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQ 90
V+YWM +R R N+ L A+ + + P+ V L + A R F++ G+
Sbjct: 26 VLYWMIASRRTRYNFGLERAIAWSMALDRPLVVLEALRCGYRWASDRIHRFVIDGMADNA 85
Query: 91 RNIEETFQILFFLFQGEAEDNIPNFVRECGA--SLLVTDFSPLREIRRCKDKICNRVSDS 148
R + + + AE + A ++VTD P + R +
Sbjct: 86 RRLAAA-GVAHHPYVEPAEGAGKGLLGALAARACVVVTDDYPCFFLPRMVASAARQAP-- 142
Query: 149 VTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLE----------QPI 198
V + +VD++ ++P+ A++++ +A++ R +++ E+L P ++ P+
Sbjct: 143 VRLEQVDSNGLLPM-RAADRVFTTARSFRIFWQRVIGEHLGAQPAVDPLKRAKLRPAAPL 201
Query: 199 -----EKWTGTRQSI-DWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKR 252
+W ++ D + L VP C G +AA + L F+ R
Sbjct: 202 PRAIARRWPAASPALLGGDPAALSALPIDHTVPPAP-CRGGPEAAGKALAR----FVADR 256
Query: 253 LKNYPTDRNNPLKPRALSGLSPYLHFGQISAQR--CALEARKARKL-------------- 296
L Y +R++P A SGLSPYLHFG ++A A+ R+A ++
Sbjct: 257 LPRYLEERDHP-DAGATSGLSPYLHFGHLAAHEVFAAVARREAFRVERLGRPGDGVKRPS 315
Query: 297 --------CPEAIDTFLEELIVRRELADN-FCFYQPNYDSLKGAW-----------EWAR 336
+ + FLE+L+ REL N F D + +W +WA
Sbjct: 316 GSREGFWGMSASAEAFLEQLVTWRELGFNAFALGASEGDGPRPSWKRDPTEYESLPDWAL 375
Query: 337 KSLKDHASDKREHIYTKEQFEKAQTAD 363
+L+ HA D+R +Y E T D
Sbjct: 376 ATLEKHARDRRPRVYPIEALAAGATYD 402
>gi|400754263|ref|YP_006562631.1| deoxyribodipyrimidine photo-lyase PhrB [Phaeobacter gallaeciensis
2.10]
gi|398653416|gb|AFO87386.1| deoxyribodipyrimidine photo-lyase PhrB [Phaeobacter gallaeciensis
2.10]
Length = 479
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 84/309 (27%), Positives = 133/309 (43%), Gaps = 38/309 (12%)
Query: 30 PVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKAR-QLGFMLRGLRL 88
P+++W+ RD R+ +N + A A +PV + F+ D+ LGA R +LG GL
Sbjct: 10 PILWWVRRDLRLAEN-PALDAAVAAGAPVIPVFI-FDTLDEDLGAAPRFRLGL---GLAH 64
Query: 89 LQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLL--VTDFSPLREIRRCKDKICNRVS 146
L + +E L L +G A++ + + E GA + + P + I R
Sbjct: 65 LAKGLERRGARLI-LRRGPAQEVLTQLITETGAGAIHWTRAYDP-QAIARDTAIKKQLKG 122
Query: 147 DSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEY-----------LIDYPMLE 195
+ H + W + +T G + ++ Y LI P
Sbjct: 123 QGIAAKSFGGHLLFEPW--------TVETKTGGMYRVYSPYWKSVRDRDVDGLIAAPSRI 174
Query: 196 QPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLKN 255
+W + W +AA +R+GA+V +C GEDAA L FL R+ +
Sbjct: 175 PAPAQWPASDDLDSWQ--LAAGMRRGADV-VAQYCRVGEDAAQARLAE----FLDTRVAD 227
Query: 256 YPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVRRELA 315
Y DR+ P A SGLS L +G+IS +R +AR+ + FL+E IV RE A
Sbjct: 228 YKQDRDFPAV-DATSGLSENLAWGEISPRRMWHHGLEARRAGKSGAEHFLKE-IVWREFA 285
Query: 316 DNFCFYQPN 324
+ F+ P+
Sbjct: 286 YHLMFHTPH 294
>gi|254465900|ref|ZP_05079311.1| deoxyribodipyrimidine photolyase [Rhodobacterales bacterium Y4I]
gi|206686808|gb|EDZ47290.1| deoxyribodipyrimidine photolyase [Rhodobacterales bacterium Y4I]
Length = 474
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 84/310 (27%), Positives = 137/310 (44%), Gaps = 32/310 (10%)
Query: 26 KKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKAR-QLGFMLR 84
R PV++W+ RD R+ DN AL A ++ +PV + + D+ LGA + +LG
Sbjct: 2 SSRAPVIWWIRRDLRLCDNPALTAAA-ESGAPVLPVYI-LDEQDEALGAAPKFRLGL--- 56
Query: 85 GLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTD--FSPLREIRRCKDKIC 142
GL + + + L L +G+A + + + E GA + + P + IRR +
Sbjct: 57 GLDHFGQELAKAGSCLI-LRRGKALRVLQDLIEETGAGAVHWSRLYDP-QAIRRDSEIKQ 114
Query: 143 NRVSDSVTIHEVDAHNVVPVWVASEKLE-----YSA--KTLRGK-INKLLPEYLIDYPML 194
V + + W K Y+ K +R + ++ LLP P
Sbjct: 115 TLKEQGVAVKSHGGRLLFEPWTVETKAGGMYKVYTPFWKAVRSRDVDSLLPA-----PGK 169
Query: 195 EQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLK 254
+ W + DW +AA +R+GA+V +C GE AA+E L + FL +
Sbjct: 170 IAAPDNWPASEDLADWR--MAAAMRRGADV-VARYCRVGETAALERL----ETFLEDSVD 222
Query: 255 NYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVRREL 314
Y R+ P + A SGLS L +G+IS R + A + + + FL+E IV RE
Sbjct: 223 AYKARRDYPAE-DATSGLSENLAWGEISPHRMWHQGSAAMERGSQGAEHFLKE-IVWREF 280
Query: 315 ADNFCFYQPN 324
A + + P+
Sbjct: 281 AYHLMYNSPH 290
>gi|126735833|ref|ZP_01751578.1| deoxyribodipyrimidine photolyase, putative [Roseobacter sp. CCS2]
gi|126715020|gb|EBA11886.1| deoxyribodipyrimidine photolyase, putative [Roseobacter sp. CCS2]
Length = 472
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 81/317 (25%), Positives = 136/317 (42%), Gaps = 30/317 (9%)
Query: 28 RGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLR 87
+ P++ W RD R+ D+ AL A D A++ +PV + L + A +LG + L
Sbjct: 3 KSPILMWFRRDLRLGDHEALTAACD-ADRPVIPVFIYDELTESMGAAPKMRLGLSVADL- 60
Query: 88 LLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTD--FSPLREIRRCKDKICNRV 145
++ E L L +G+A D + +++ GA + + P + R K +
Sbjct: 61 --AASLNEKGSKLI-LRRGKALDVLRELIKDTGADTVYWSRLYDPDGKTRDTDVKAALK- 116
Query: 146 SDSVTIHEVDAHNVVPVWVASEKLE-----YSA--KTLRGKINKLLPEYLIDYPMLEQPI 198
D +T H + W K+ Y+ K++RG +P L + P
Sbjct: 117 DDGITAESFKGHVLFEPWTVETKIGGFYKVYTPMWKSVRGND---VPAALPTPGTIPVP- 172
Query: 199 EKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLKNYPT 258
+ W + DW + A + +GA+ + C GE AA L F+ + NY
Sbjct: 173 DSWPKSDDIADWQ--MDAAMHRGADTLKSH-CTVGEAAASHRLGA----FIANHVANYVK 225
Query: 259 DRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVRRELADNF 318
+R+ P SGLS L +G+IS ++C +A +TFL+EL V RE A +
Sbjct: 226 NRDLPAV-DGTSGLSENLTYGEISPRKCWHSGWQALNDGKGDAETFLKEL-VWREFAYHL 283
Query: 319 CFYQP--NYDSLKGAWE 333
++ P D+ K W+
Sbjct: 284 AYHTPRITTDNWKEDWD 300
>gi|213983211|ref|NP_001135721.1| CPD photolyase-like [Xenopus (Silurana) tropicalis]
gi|197246287|gb|AAI69177.1| Unknown (protein for MGC:189672) [Xenopus (Silurana) tropicalis]
Length = 157
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/57 (50%), Positives = 39/57 (68%)
Query: 31 VVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLR 87
+VYWM RDQRV+DNWA ++A A K +P+ V F L +FL A R GFM++GL+
Sbjct: 93 IVYWMSRDQRVQDNWAFLYAQRLALKQKLPLHVTFCLVPKFLDATIRHYGFMVKGLQ 149
>gi|374723916|gb|EHR75996.1| putative DNA deoxyribodipyrimidine photolyase [uncultured marine
group II euryarchaeote]
Length = 456
Score = 65.1 bits (157), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 81/354 (22%), Positives = 150/354 (42%), Gaps = 28/354 (7%)
Query: 29 GPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRL 88
GPVV W+ R+ +N A+ A ++N P+ + + +++ A R +L
Sbjct: 25 GPVVVWLKSSFRLHENPAIDLGRHIAAEHNRPLLIYHGIDERYPHASLRHHTMLLDAAVD 84
Query: 89 LQRNIEETFQILFFLFQGEAEDNIPNFVR--ECGASLLVTDFSPLREIRRCKDKICNRVS 146
+ + L ++ + + P+ ++ AS ++TD PL D I S
Sbjct: 85 MDEGCRKAG--LRYVLHVARDGHRPSVMKAFSQSASCIITDLFPLPPWTNWVDSIA--AS 140
Query: 147 DSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYL-IDYPMLEQPIEKWTG-- 203
+ + +VD H V+P+ + + ++ K R K+ + L +P ++ E +TG
Sbjct: 141 AACPVFDVDCHCVIPMPLFGKSVDRPYK-FRDATKKMRKKRLQATWPTIDVRPEAYTGPL 199
Query: 204 ------TRQSIDWDSIIAAVLRKGAEVPEI--GWCE-SGEDAAMEVLKGSKDGFLTKRLK 254
+ I S +L K + P + W E GE A+ + F K L
Sbjct: 200 PFEPVNVNEDIKNLSKRFELLSKCSIDPSVLPVWHERGGEKEALSKWQR----FYDKGLN 255
Query: 255 NYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVRREL 314
Y RNN P +S LS H+G +S R AR+A + ++ + +L+EL++ RE
Sbjct: 256 GYARRRNNAADPNGVSRLSAAFHYGFLSPMRV---AREAAAVGTKSAEKYLDELLIFREH 312
Query: 315 ADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPVSIY 368
+ F + EWA +S ++ + D R + + E A P++++
Sbjct: 313 PWHHIFAASDPYDASNLPEWALQSWRETSDDPR--VVRLKDHEMEYAASPLTLW 364
>gi|114707205|ref|ZP_01440103.1| DNA photolyase [Fulvimarina pelagi HTCC2506]
gi|114537401|gb|EAU40527.1| DNA photolyase [Fulvimarina pelagi HTCC2506]
Length = 492
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 84/313 (26%), Positives = 125/313 (39%), Gaps = 35/313 (11%)
Query: 15 RIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGA 74
R + K + D++ GP+V W+ D R+ DN AL A + N+ VP+ V D
Sbjct: 3 RSKAPKSETADQETGPIVVWLRDDLRLDDNPALALAA-ETNRPIVPLVVLDEESDGVRAL 61
Query: 75 KARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREI 134
++ L ++ L L +G+A+D + + + + GAS L + +
Sbjct: 62 GGAHKWWLHHSLESFASSLRGKGSRL-TLRRGKAKDQVLDVIEKTGASALFFNRRYDQAS 120
Query: 135 RRCKDKICNRVSDSVTIHEVDA---HNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDY 191
R D I + D V++ A H+ V S K+++ P ID
Sbjct: 121 RAVDDAIGEALGDQVSVERFTANLLHDPENVETTSGGYYKVFTPFWRKVSESGPRDPIDP 180
Query: 192 P-MLEQP--------IEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLK 242
P L+QP +E W DW IA W GE AA + +
Sbjct: 181 PDGLKQPDTFPQSDDLEDWELLPTKPDWSGGIADF-----------WT-PGEKAAHDRFE 228
Query: 243 GSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEAR---KARKLCP- 298
F L +Y R P S +SPYL +G+IS R A+ RK P
Sbjct: 229 ----TFCDDLLSDYHKGRERPYADDT-SRMSPYLRWGEISPYRLWHTAQAYANRRKTVPD 283
Query: 299 EAIDTFLEELIVR 311
EAI TFL+EL+ R
Sbjct: 284 EAIRTFLQELVWR 296
>gi|99081282|ref|YP_613436.1| deoxyribodipyrimidine photo-lyase type I [Ruegeria sp. TM1040]
gi|99037562|gb|ABF64174.1| Deoxyribodipyrimidine photo-lyase type I [Ruegeria sp. TM1040]
Length = 474
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 85/301 (28%), Positives = 131/301 (43%), Gaps = 24/301 (7%)
Query: 30 PVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKAR-QLGFMLRGLRL 88
PV++W+ RD R+RDN AL A +A +P+ + + ++ LGA + +LG GL
Sbjct: 6 PVIWWIRRDLRLRDNPAL-RAAQEAGGPIIPLYI-HDAQEEALGAAPKFRLGL---GLER 60
Query: 89 LQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTD--FSPLREIRRCKDKICNRVS 146
+ +EE L + +G+A + + + E GA ++ + P R K K + S
Sbjct: 61 FAKTLEEKGSRLI-VRRGDALEVLREVIAESGAGHVIWSRLYDPAATKRDAKIKEALKAS 119
Query: 147 DSVTIHEVDAHNVVPVWVASEK--LEYSAKT--LRGKINKLLPEYLIDYPMLEQPIEKWT 202
D + + W K Y T + + + E L P E W
Sbjct: 120 D-IKAKSTGGRLLFEPWTVDTKDGGMYRVYTPFWKAVRTRDVAELTAAPSRLAAP-ESWP 177
Query: 203 GTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNN 262
D + AA+ R GA V + C GEDAA+ L D FLT+R+ NY R+
Sbjct: 178 SGEALADL-GMDAAMRRGGAIVAQH--CRVGEDAALAQL----DDFLTERVSNYKAHRDF 230
Query: 263 PLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVRRELADNFCFYQ 322
P + A S LS L +G+IS R +A + + FL+E +V RE A +
Sbjct: 231 PARA-ATSELSENLAWGEISPHRMWHLGAQAMQDGQPGAEHFLKE-VVWREFAYHLMHRS 288
Query: 323 P 323
P
Sbjct: 289 P 289
>gi|402502124|ref|YP_006607782.1| DNA photolyase 1 [Apocheima cinerarium nucleopolyhedrovirus]
gi|284431214|gb|ADB84374.1| DNA photolyase 1 [Apocheima cinerarium nucleopolyhedrovirus]
Length = 123
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/78 (43%), Positives = 46/78 (58%), Gaps = 8/78 (10%)
Query: 13 PGRIRVLKQ--------GSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVA 64
P RIRVL + + + G +VYWM RD RV+DNWA+I+A + AN N+P+ V
Sbjct: 45 PRRIRVLSSLCQSVNQNANNNGRNGGIVYWMSRDSRVQDNWAMIYAQELANAQNLPLYVV 104
Query: 65 FNLFDQFLGAKARQLGFM 82
F L +FL A RQ F+
Sbjct: 105 FCLTKRFLNASLRQFHFL 122
>gi|110679555|ref|YP_682562.1| deoxyribodipyrimidine photolyase [Roseobacter denitrificans OCh
114]
gi|109455671|gb|ABG31876.1| deoxyribodipyrimidine photolyase, putative [Roseobacter
denitrificans OCh 114]
Length = 472
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 86/314 (27%), Positives = 129/314 (41%), Gaps = 32/314 (10%)
Query: 30 PVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQF--LGAKAR-QLGFMLRGL 86
PV+ W RD R+ D+ A+D A K+ PV F DQ LGA R +LG G+
Sbjct: 5 PVLVWFRRDLRLSDH----PALDAAVKSGNPVIPVFIHDDQVETLGAAPRWRLGL---GI 57
Query: 87 RLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTD--FSPLREIRRCKDKICNR 144
L +E L +G A + + + E GA + + P R + K +
Sbjct: 58 GHLSETLE-GLNSRLILRRGPALETLRTLILETGAGAVFWSRLYDPAAVERDTEVKAALK 116
Query: 145 VSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPM-----LEQPIE 199
D + H + W K K N ++ +D P+ ++ P
Sbjct: 117 -QDGIDARSFGGHLMFEPWTVETKTGGFYKVYTPFWN-MVKNRDVDAPLSAPSRIDAPA- 173
Query: 200 KWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLKNYPTD 259
W G+ DW+ + A + +GA V + GE AA L + F+ K + Y T
Sbjct: 174 AWPGSDTLSDWN--MGAAMDRGAAV-VAPYVRLGEAAAQTRL----NTFIDKIVAGYDTT 226
Query: 260 RNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVRRELADNFC 319
R+ P SGLS L G+IS +C +AR+ +TFL+EL V RE A +
Sbjct: 227 RDQPAI-DGTSGLSENLALGEISPHQCWYAGLRAREEEKPGAETFLKEL-VWREFAYHLM 284
Query: 320 FYQPNYDSLKGAWE 333
+ P L G W+
Sbjct: 285 HHTPRI--LTGNWK 296
>gi|83953690|ref|ZP_00962411.1| deoxyribodipyrimidine photolyase [Sulfitobacter sp. NAS-14.1]
gi|83841635|gb|EAP80804.1| deoxyribodipyrimidine photolyase [Sulfitobacter sp. NAS-14.1]
Length = 473
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 77/305 (25%), Positives = 125/305 (40%), Gaps = 28/305 (9%)
Query: 28 RGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLR 87
+ P++ W RD R+ D+ AL A + A + +PV + D A +LG G+
Sbjct: 4 KSPILLWYRRDLRLSDHPALSAAAN-AGRPVIPVFIKDKSVDALGAAPKWRLGL---GIG 59
Query: 88 LLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLL----VTDFSPLREIRRCKDKICN 143
L ++E L L +G+A + + ++E GA + + D ++ + K+ +CN
Sbjct: 60 ALADSLEGVSSRLI-LREGDALEVLQALIKETGAGTVYWSRLYDPDSVKRDSKIKETLCN 118
Query: 144 RVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQPI----- 198
D + H + W K K N + + P L P
Sbjct: 119 ---DGIEAKSFGGHVMFEPWTVETKAGDCYKVYTPFWNNVKTRDV--EPPLSAPSDLPAP 173
Query: 199 EKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLKNYPT 258
E W + WD + A + +GA+V C GE AA L F+ + +Y
Sbjct: 174 ESWPDSDALDGWD--LGAAMDRGADVVRPFVC-LGEKAAQSRLGA----FMAHGVADYKQ 226
Query: 259 DRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVRRELADNF 318
R+ P S LS L G+IS +C A++A + +TFL+EL V RE A +
Sbjct: 227 TRDIP-GTDGTSNLSENLSLGEISPHQCWHAAQRALHDGKQGAETFLKEL-VWREFAYHL 284
Query: 319 CFYQP 323
+ P
Sbjct: 285 MHHTP 289
>gi|255261881|ref|ZP_05341223.1| deoxyribodipyrimidine photo-lyase [Thalassiobium sp. R2A62]
gi|255104216|gb|EET46890.1| deoxyribodipyrimidine photo-lyase [Thalassiobium sp. R2A62]
Length = 473
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 82/312 (26%), Positives = 130/312 (41%), Gaps = 24/312 (7%)
Query: 30 PVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLL 89
P++ W RD R+ D+ AL AV + VP+ + + + A +LGF + L
Sbjct: 6 PIILWFRRDLRLGDHPALAAAV-ATGRPIVPLFIHDEVVEGQGAAPKMRLGFSVEAL--- 61
Query: 90 QRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTD--FSPLREIRRCKDKICNRVSD 147
R++ T L L +G A D + + E GA + + PL + R K + D
Sbjct: 62 DRSLHGTGSRLV-LRRGRALDVLRKVITETGAGAVYWSRLYDPLSKERDTAVKSALK-DD 119
Query: 148 SVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKL----LPEYLIDYPMLEQPIEKWTG 203
VT H + W K K + LP LE P ++W
Sbjct: 120 GVTAQSFAGHLLFEPWTVETKTGGFYKVFTPMWKAVRGTDLPVSTPAPNRLEAP-QEWPA 178
Query: 204 TRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNP 263
+ DW + A + +G +V +C GE AA+ L + F+ +R+ NY T+R+ P
Sbjct: 179 SDALADW--AMDAAMMRGRDV-LAAFCTVGEQAALSRL----ETFINERVGNYQTNRDLP 231
Query: 264 LKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVRRELADNFCFYQP 323
+ S LS L +G+I+ C A + FL+EL V RE A + + P
Sbjct: 232 -RVDGTSRLSENLTYGEIAPLTCWHAGWAALNHGDADAEVFLKEL-VWREFAYHLVHHTP 289
Query: 324 NY--DSLKGAWE 333
+ D+ K W+
Sbjct: 290 HITTDNWKPDWD 301
>gi|114764326|ref|ZP_01443554.1| deoxyribodipyrimidine photolyase [Pelagibaca bermudensis HTCC2601]
gi|114543274|gb|EAU46291.1| deoxyribodipyrimidine photolyase [Roseovarius sp. HTCC2601]
Length = 473
Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 80/314 (25%), Positives = 130/314 (41%), Gaps = 26/314 (8%)
Query: 30 PVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLL 89
P++ W+ RD R+ D+ A +H ++ + +PV + + DQ A +LG GL
Sbjct: 6 PIIVWIRRDLRLSDH-ATLHEAGKSGRPVIPVFIRDHTVDQLGAAPKWRLGL---GLGCF 61
Query: 90 QRNIEETFQILFFLFQGEAEDNIPNFVRECGASLL----VTDFSPLREIRRCKDKICNRV 145
+ E L L G A + + + E GA + D + + K + +R
Sbjct: 62 GEALAEKGSRLI-LRAGPAREVLDALIDETGAGAVWWQRAYDPASVERDTAVKSALKDRE 120
Query: 146 SDSVTIHEVDAHNVVPVWVASEKLE--YSAKT--LRGKINKLLPEYLIDYPMLEQPIEKW 201
D+ + H + W K Y T R ++ +PE L L P E W
Sbjct: 121 IDARSFA---GHLLFEPWTVETKQGGFYKVYTPFWRAVCDRDVPEPLPAPSKLAAP-ESW 176
Query: 202 TGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLKNYPTDRN 261
+ DW + +R+GA V E + + GE AA L F + ++ +Y RN
Sbjct: 177 PESDALDDWG--LGDAMRRGAAVVEP-YVQLGERAAQARLGA----FTSGKIADYDKGRN 229
Query: 262 NPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVRRELADNFCFY 321
+ S LS L G+IS +C A +A+ E +T+ +EL V RE A + ++
Sbjct: 230 L-VAEDGCSTLSENLALGEISPAQCWHAAMRAKDAGKEGAETWAKEL-VWREFAYHLLWH 287
Query: 322 QPNYDSLKGAWEWA 335
P+ EWA
Sbjct: 288 TPHLAESNWREEWA 301
>gi|159488927|ref|XP_001702452.1| CPD photolyase type II [Chlamydomonas reinhardtii]
gi|158271120|gb|EDO96947.1| CPD photolyase type II [Chlamydomonas reinhardtii]
Length = 894
Score = 62.0 bits (149), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 39/111 (35%), Positives = 57/111 (51%), Gaps = 5/111 (4%)
Query: 253 LKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVRR 312
+ Y RN+ ++ S +S YLH+G +S R EA + FL+EL+V R
Sbjct: 663 VGRYAASRNDAMQRGGTSRMSAYLHWGMVSPFRVTREAAASGG---SGCAKFLDELLVWR 719
Query: 313 ELADNFCFYQ-PNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTA 362
ELA +FCF++ DSL WA+ +L HASD R + + +Q E T
Sbjct: 720 ELAYSFCFHRCGQLDSLAVLPRWAQDTLAAHASDPRA-VRSLQQLETGTTG 769
>gi|429964158|gb|ELA46156.1| hypothetical protein VCUG_02358 [Vavraia culicis 'floridensis']
Length = 675
Score = 61.6 bits (148), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 48/143 (33%), Positives = 67/143 (46%), Gaps = 28/143 (19%)
Query: 248 FLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQ---RCALE-------ARKARKLC 297
F+ L Y RN+ LSG+S Y++ GQISA R ++ + K RK
Sbjct: 431 FMKNSLIIYDKYRNSA-DQNVLSGVSAYINDGQISAGDVVRAVIQWGEGGDRSAKRRKTG 489
Query: 298 PEA----------------IDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKD 341
+ T+L E+ + RE A+ F NYD+ GA +WA+ +L
Sbjct: 490 SSIRAITGSADSKDEKMVNVTTYLNEVFIWRETAEYFITRNANYDNFYGALKWAQDTLMA 549
Query: 342 HASDKREHIYTKEQFEKAQTADP 364
H SD REH YT EQ A+T+DP
Sbjct: 550 HLSDPREH-YTLEQLVLARTSDP 571
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/146 (28%), Positives = 66/146 (45%), Gaps = 17/146 (11%)
Query: 31 VVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQ 90
V+Y RD+R+ DN AL + A+ V F + +++ Q F+ GL L+
Sbjct: 19 VLYLSRRDKRIVDNAALFYCYTLADH------VIFGVKPEYIVGNHMQRKFIAEGLAELK 72
Query: 91 RNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKI---CNRVSD 147
++ + I F L I V C +V D SPLR R D++ C R
Sbjct: 73 QSCRQ-HNIPFVLIH-----RIDELVSTCNVECIVLDHSPLRYARAVDDQLHEYCKR--R 124
Query: 148 SVTIHEVDAHNVVPVWVASEKLEYSA 173
+ + VDAHN+VP V + ++ S+
Sbjct: 125 DIALVRVDAHNIVPYGVVKDDVKSSS 150
>gi|339503748|ref|YP_004691168.1| deoxyribodipyrimidine photo-lyase PhrB [Roseobacter litoralis Och
149]
gi|338757741|gb|AEI94205.1| deoxyribodipyrimidine photo-lyase PhrB [Roseobacter litoralis Och
149]
Length = 472
Score = 61.6 bits (148), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 81/312 (25%), Positives = 124/312 (39%), Gaps = 24/312 (7%)
Query: 30 PVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLL 89
PV+ W RD R+ D+ AL AV N +PV + + + A +LG G+ L
Sbjct: 5 PVLVWFRRDLRLSDHPALNAAVKSGNPV-IPVFIHDDQVETLGAAPKWRLGL---GIDHL 60
Query: 90 QRNIEETFQILFFLFQGEAEDNIPNFVRECGA-SLLVTDFSPLREIRRCKDKICNRVSDS 148
+E L +G A + + V+E GA ++ T + R + D
Sbjct: 61 SETLE-GLNSRLILRRGPALETLRTLVQETGAGAVFWTRLYDPAAVDRDTELKAALKQDG 119
Query: 149 VTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQPI-----EKWTG 203
+ H + W K K N ++ +D P L P + W
Sbjct: 120 IDARSFGGHLMFEPWTVETKTGGFYKVYTPFWN-MVKNRDVDAP-LSAPAKIPAPDAWPS 177
Query: 204 TRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNP 263
+ DW+ + A + +GA V + GE AA L F+ K + Y T R+ P
Sbjct: 178 SEALSDWN--MGAAMDRGAAV-VAPYVRLGEAAAQTRLST----FIDKIVARYDTTRDQP 230
Query: 264 LKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVRRELADNFCFYQP 323
SGLS L G+IS +C +AR+ +TFL+EL V RE A + + P
Sbjct: 231 AV-DGTSGLSENLALGEISPHQCWHAGLRARQEGKPGAETFLKEL-VWREFAYHLMHHTP 288
Query: 324 NY--DSLKGAWE 333
D+ K W+
Sbjct: 289 RILTDNWKEGWD 300
>gi|295689308|ref|YP_003593001.1| deoxyribodipyrimidine photo-lyase [Caulobacter segnis ATCC 21756]
gi|295431211|gb|ADG10383.1| Deoxyribodipyrimidine photo-lyase [Caulobacter segnis ATCC 21756]
Length = 481
Score = 61.2 bits (147), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 94/359 (26%), Positives = 145/359 (40%), Gaps = 74/359 (20%)
Query: 21 QGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAK---AR 77
G + G V+ W +D R+ DN AL HA D PV V + D+ G + A
Sbjct: 5 SGDSEASPGAVIVWFRKDLRIADNPALRHAADSGR----PV-VCLYILDETPGVRPMGAA 59
Query: 78 QLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLV------------ 125
L ++ + L+ L + +E+ L L +G A D + + E GA+ +V
Sbjct: 60 SLWWLDKSLKSLAQELEKLGNRLV-LRKGVAADVLDALIAETGATGVVWNRLYDKASVDR 118
Query: 126 --TDFSPLREIR-RCKDKICNRVSDSVTIHEVDAHN---VVPVWVASEK------LEYSA 173
T + L+E C+ +++ T+ P W A+ + +E +
Sbjct: 119 DATIKARLKEAGVDCQSFNAGLLNEPWTVQNGSGQPYKVFTPYWRAARQHLDDVTVEPAP 178
Query: 174 KTLRGKINKLLPEYLIDYPMLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESG 233
K LR +D + +P+ W DW KG ++ G E+G
Sbjct: 179 KVLR----------CLDKAVRSEPLAAWDLHPTRPDWS--------KGFDLWTPG--EAG 218
Query: 234 EDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKA 293
A + D FL+ + Y R+ P P A S LSP+LHFG+I ++ L AR A
Sbjct: 219 ARARL-------DAFLSGPITGYGEKRDIPSAP-ATSRLSPHLHFGEIGPRQVWLAARNA 270
Query: 294 RKL--CPEA-IDTFLEELIVRRELADNFCFYQP-----NYDSLKGAWEWARKSLKDHAS 344
+ P A D FL EL RE + F+ P N+ + WA KDHA+
Sbjct: 271 AEAGDIPTAEADKFLSEL-GWREFNHSILFHWPQLPARNFKPEFDGFPWA----KDHAA 324
>gi|440492998|gb|ELQ75517.1| Deoxyribodipyrimidine photolyase/cryptochrome [Trachipleistophora
hominis]
Length = 651
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 42/64 (65%), Gaps = 1/64 (1%)
Query: 301 IDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQ 360
+ T+L E+ V RE A+ F PNYD+ GA +WA+ +L H SD+R+H YT +Q A+
Sbjct: 481 VTTYLNEIFVWRETAEYFILRNPNYDNFYGALKWAQDTLTAHLSDQRQH-YTLDQLILAR 539
Query: 361 TADP 364
T+DP
Sbjct: 540 TSDP 543
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 79/172 (45%), Gaps = 14/172 (8%)
Query: 31 VVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQ 90
V+Y RD+R+ DN AL + ++ V F + +++ Q F+ GL L+
Sbjct: 19 VLYLSRRDKRIHDNAALFYCYTLTDR------VIFGIKPEYIVGNYMQRRFIAEGLAELK 72
Query: 91 RNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICNRV-SDSV 149
+ I F L Q I VR +V D SPLR R D++ S+ +
Sbjct: 73 GACRQ-HNIPFVLIQ-----RIDELVRTHCIDCIVVDHSPLRYSRAVDDQLYRYCKSNCI 126
Query: 150 TIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQPIEKW 201
+ VDAHN+VP V + ++ S+ ++ ++ + E++ + ++E+ W
Sbjct: 127 ALVRVDAHNIVPYAVVKDDVK-SSSAVKKRLLERFGEFVDERYLVERRECMW 177
>gi|302383034|ref|YP_003818857.1| deoxyribodipyrimidine photo-lyase [Brevundimonas subvibrioides ATCC
15264]
gi|302193662|gb|ADL01234.1| Deoxyribodipyrimidine photo-lyase [Brevundimonas subvibrioides ATCC
15264]
Length = 490
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 84/321 (26%), Positives = 131/321 (40%), Gaps = 42/321 (13%)
Query: 30 PVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLG---AKARQLGFMLRGL 86
PV+ W RD R+ DN A+++A+ PV V + D+ A A L ++ + L
Sbjct: 11 PVILWFRRDLRLADN----PALNKAHATGRPV-VPVYIHDEGTAVRPAGAASLWWLDKSL 65
Query: 87 RLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTD--FSPLREIRRCKDKICNR 144
R L ++ E L L +G++E + + + GA + + F P R D
Sbjct: 66 RALAGSLAERGATLI-LRRGDSETELRRLIDQTGADTVFLNRLFEP-EAWTRDADIAHGL 123
Query: 145 VSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQPIEKWTGT 204
+D V + + L S G K+ ++ +P TG
Sbjct: 124 KTDGVECRGSNGSLLA--------LPGSLLNGSGGPYKVFTPFMKALRAQAEPPAHTTGP 175
Query: 205 RQ-----SIDWDSIIAAVLRKGAEVPEIGW-CESGEDAAMEVLKGSKDGFLTKRLKNYPT 258
RQ ++ D + A L G+ GED A L F++ L +Y
Sbjct: 176 RQLGAAPGLESDDLDAWGLHPTRPDWSKGFDWTPGEDGATAALHR----FVSGGLADYSN 231
Query: 259 DRNNPLKPRALSGLSPYLHFGQISAQRCALEARKAR---KLCPEAIDTFLEELIVR---R 312
R+ P +P A S LSP+LHFG+IS R + AR A K+ D F+ ELI R
Sbjct: 232 GRDRPAEP-ATSRLSPHLHFGEISPWRAWIAARDAADGGKVTSGEADKFIAELIWRDFSA 290
Query: 313 ELADNFCF-----YQPNYDSL 328
L +F ++P YD++
Sbjct: 291 HLLHHFPTLPDKAFRPEYDAM 311
>gi|393215739|gb|EJD01230.1| hypothetical protein FOMMEDRAFT_169392 [Fomitiporia mediterranea
MF3/22]
Length = 1055
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 82/310 (26%), Positives = 132/310 (42%), Gaps = 61/310 (19%)
Query: 26 KKRGPVVYWM-FRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAK---ARQLGF 81
KK VVYW+ D RV DN AL A +QA +N+P+ V F + Q A R++ F
Sbjct: 116 KKGESVVYWLRMEDLRVVDNRALSLASEQAQSHNIPLLVLFVISPQDYEAHDRGPRRIDF 175
Query: 82 MLRGLRLLQRNIEETFQILFFLFQGEAEDNIP----NFVRECGASLLVTDFS-PLREIRR 136
MLR ++++Q ++++ I ++ E +IP + + + GA+ L + S + E+RR
Sbjct: 176 MLRNVKVIQDDLDK-LHIPLYIVTVEPRHSIPSRVISLLEDWGATQLFANISYEVDELRR 234
Query: 137 --------CKDKI-CNRVSDSVTIH-------EVDAHNVVPVW------VASEKLEY--- 171
K I C+ + D + ++ A+ V W +E LE+
Sbjct: 235 DIKIHAAGKKANIKCDFIQDKLVVNPGILKTKNGRAYTVYSPWQRNWVTTLNESLEWIEE 294
Query: 172 ------------SAKTLRGKINKLLPEYLIDYPMLEQP--IEKW-TGTRQSIDWDSIIAA 216
S+ G +PE++ + ++ E W GT+ ++ ++
Sbjct: 295 APMPKANDKAIRSSGRFSGLFESKVPEFVDRFECADKDKMAEYWPGGTKVAL---QMLDR 351
Query: 217 VLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYL 276
L A +IG D A E K S R++ Y T R N S LSPYL
Sbjct: 352 FLHTKARSSQIGETSPLSDGAEESNKSS-------RIQEYSTGR-NLTDMDTTSRLSPYL 403
Query: 277 HFGQISAQRC 286
G ISA+ C
Sbjct: 404 ASGVISARAC 413
>gi|302850180|ref|XP_002956618.1| photolyase [Volvox carteri f. nagariensis]
gi|300258145|gb|EFJ42385.1| photolyase [Volvox carteri f. nagariensis]
Length = 667
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 41/101 (40%), Positives = 56/101 (55%), Gaps = 7/101 (6%)
Query: 270 SGLSPYLHFGQIS----AQRCALE-ARKARKLCPEAIDTFLEELIVRRELADNFCFYQ-P 323
S +SPYLH+G +S A+R E AR+A FL+EL+V REL+ +FCFY+
Sbjct: 463 SRMSPYLHWGMVSPFRSAERGGYEIAREAAASGGSGAGKFLDELLVWRELSYSFCFYRYS 522
Query: 324 NYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADP 364
SL WA+ +L HA+D R + T +Q E T DP
Sbjct: 523 QLQSLSVLPRWAQDTLAAHATDPRV-VKTLQQLELGATGDP 562
>gi|335425144|ref|ZP_08554132.1| Deoxyribodipyrimidine photo-lyase [Salinisphaera shabanensis E1L3A]
gi|334886580|gb|EGM24937.1| Deoxyribodipyrimidine photo-lyase [Salinisphaera shabanensis E1L3A]
Length = 483
Score = 58.5 bits (140), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 83/312 (26%), Positives = 126/312 (40%), Gaps = 39/312 (12%)
Query: 31 VVYWMFRDQRVRDNWALIHAVDQANKNNVPVAV--AFNLFDQFLGAKARQLGFMLRGLRL 88
V+ W RD R+ DN AL A+D + VPV + L D GA R ++ L
Sbjct: 5 VIIWFRRDLRLADNPALRAALDDDFDSIVPVYIHAPHELGDWAPGAAQRV--WLHDSLAA 62
Query: 89 LQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTD--FSPLREIRRCKDKICNRVS 146
+E L + +G+ D + + E GA+ + + + PL I R K +
Sbjct: 63 FSDALEALGSRL-VIRRGDTTDVLDTLIAESGATSVYWNRLYDPL-TIARDKKVKQHLAD 120
Query: 147 DSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQPI--EKWTGT 204
+ + AH + W K K K + +D P+ E W+
Sbjct: 121 NDIETASFKAHLLHEPWTVETKQGGPYKVFT-PFWKAIKNRAVDTPLAAPDALPEVWS-- 177
Query: 205 RQSIDWDSIIAAVLRKGAEVPEIGW-------CESGEDAAMEVLKGSKDGFLTKRLKNYP 257
I +S+ + LR P+IGW GED A E L + FL LK Y
Sbjct: 178 --RIGSESLASLELR-----PKIGWDRGIRETWSPGEDGAHERL----ETFLADALKTYD 226
Query: 258 TDRNNPLKPRALSGLSPYLHFGQISAQRCA------LEARKARKLCPEAIDTFLEELIVR 311
R+ P +P S LSP+LH+G+I ++ L+ + K D+FL E I
Sbjct: 227 EARDEPARP-GTSYLSPHLHWGEIGPRQIVHRVEEWLDDHREIKTLRTQADSFLSE-IGW 284
Query: 312 RELADNFCFYQP 323
RE A + ++ P
Sbjct: 285 REFAHHVLYHFP 296
>gi|82548258|gb|ABB82949.1| putative DNA deoxyribodipyrimidine photolyase [uncultured organism
HF70_19B12]
Length = 738
Score = 58.2 bits (139), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 78/349 (22%), Positives = 139/349 (39%), Gaps = 29/349 (8%)
Query: 31 VVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQ 90
V++WM R+ +N A A ++P+ + + +++ A R F++ G +
Sbjct: 27 VIHWMRAALRLDENPTFDVARTIAKNLSLPLLIYQGIDERYPYASYRHHRFLIEGAADVA 86
Query: 91 RNIEETF--QILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICNRVSDS 148
+ +L G E N+ +E A+++VTD L + + R+
Sbjct: 87 HRANQIGVKYLLHVSRDGHREPNLQYIAQE--AAVVVTDLVDLSPWSNWTESVA-RIRPV 143
Query: 149 VTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQPI----EKWTGT 204
+ EVDAH V+P V + + ++ +P I + WT
Sbjct: 144 I---EVDAHCVLPRPVFGRTFDRPFRFRDATKREMKRRMAQPWPSTNHEITSFPDTWTPP 200
Query: 205 RQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAA--MEVLKGSK------DGFLTKRLKNY 256
+D + LRK + C+ +++ G+ + FL++ L Y
Sbjct: 201 FTPVD----ASLELRKDGAQSLLAACQIDPTVVPVTDMIGGASVAMTRWNNFLSEGLSRY 256
Query: 257 PTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVRRELAD 316
RNN K +SG+SP+LH G I+A R R A + FL+E++V RE A
Sbjct: 257 HRTRNNAAKRGGVSGMSPWLHHGMIAATRL---VRDAANSPTKGAQKFLDEMLVFREHAY 313
Query: 317 NFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPV 365
+ N + WAR+S ++ K ++ E+ T DP+
Sbjct: 314 HHAHEVDNPLEWRHLPGWARESWQNTCLVKYPLLWM--DLERGNTDDPL 360
>gi|83942471|ref|ZP_00954932.1| deoxyribodipyrimidine photolyase [Sulfitobacter sp. EE-36]
gi|83846564|gb|EAP84440.1| deoxyribodipyrimidine photolyase [Sulfitobacter sp. EE-36]
Length = 473
Score = 58.2 bits (139), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 75/305 (24%), Positives = 124/305 (40%), Gaps = 28/305 (9%)
Query: 28 RGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLR 87
+ P++ W RD R+ D+ AL A + A + +PV + + A +LG G+
Sbjct: 4 KSPILLWYRRDLRLSDHPALSAAAN-AGRPVIPVFIKDKSVNALGAAPKWRLGL---GVG 59
Query: 88 LLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLL----VTDFSPLREIRRCKDKICN 143
L ++E L L +G+A + + ++E GA + + D ++ + K+ +CN
Sbjct: 60 ALADSLEGVSSRLI-LREGDALEALQALIKETGAGTVYWSRLYDPDSVQRDSKIKETLCN 118
Query: 144 RVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQPI----- 198
D + H + W K K N + + P L P
Sbjct: 119 ---DGIEAKSFGGHVMFEPWTVETKAGDCYKVYTPFWNNVKTRDV--EPPLSAPSDLPAP 173
Query: 199 EKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLKNYPT 258
E W + W + A + +GA+V C GE AA L F+ + +Y
Sbjct: 174 ESWPDSDALDGWG--LGAAMDRGADVVRRFVC-LGEKAAQSRLGA----FMAHGVADYKL 226
Query: 259 DRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVRRELADNF 318
R+ P S LS L G+IS +C A++A + +TFL+EL V RE A +
Sbjct: 227 TRDIP-GTDGTSNLSENLSLGEISPHQCWHAAQRALHDGKQGAETFLKEL-VWREFAYHL 284
Query: 319 CFYQP 323
+ P
Sbjct: 285 MHHTP 289
>gi|119477185|ref|ZP_01617421.1| putative photolyase [marine gamma proteobacterium HTCC2143]
gi|119449548|gb|EAW30786.1| putative photolyase [marine gamma proteobacterium HTCC2143]
Length = 477
Score = 57.8 bits (138), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 76/306 (24%), Positives = 136/306 (44%), Gaps = 40/306 (13%)
Query: 34 WMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRG-LRLLQRN 92
W +D R+ DN AL A ++ +PV + L DQ GA ++G R L +
Sbjct: 2 WFRQDLRLADNPALCAACERGEI--IPVYI---LDDQ--GAGQWKMGGASRWWLHFALAD 54
Query: 93 IEETFQILFFLFQGEAEDNIPNFVRECGASLLVTD--FSPLREIRRCKDKICNRVSDSVT 150
+ + + ++QG+A + + + GA+ +V + + P R R K + S
Sbjct: 55 LNASLKQCLQIYQGDALTILGDLADQTGAATVVWNRCYEPWRIGRDATIKTSLKESGL-- 112
Query: 151 IHEVDAHNVVPVWVASEKLE--------YSAKTLRGKINKLLPEYLIDYPMLEQPIEKWT 202
+V + N +W + L+ ++ RG ++ + P +D P + ++ +
Sbjct: 113 --DVQSFNGSLLWEPWQVLKKDGTPYKVFTPYYRRGCLSTVAPRRPMDPP---KTLKVFV 167
Query: 203 GTRQSIDWDSIIAAVLRKGAEVPEIGWCESGE---DAAMEVLKGSKDGFLTKRLKNYPTD 259
+ S++ D++ +P+I W ES + D + D F+ L++Y
Sbjct: 168 DSGDSLELDNLNL--------LPKIAWDESMKACWDISEAAAHARLDEFVMNELQDYREG 219
Query: 260 RNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLC--PEAIDTFLEELIVRRELADN 317
RN P K + +S LSPYLHFGQIS A +A +++DTF+ EL RE +
Sbjct: 220 RNFPAK-QNVSRLSPYLHFGQISPNSAWYRAAEAGAFINNEQSLDTFMSEL-GWREFSYY 277
Query: 318 FCFYQP 323
++ P
Sbjct: 278 LLYHWP 283
>gi|455789357|gb|EMF41286.1| deoxyribodipyrimidine photo-lyase domain protein [Leptospira
interrogans serovar Lora str. TE 1992]
Length = 257
Score = 57.8 bits (138), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 42/137 (30%), Positives = 65/137 (47%), Gaps = 24/137 (17%)
Query: 253 LKNYPTDRNNPLKPRAL--SGLSPYLHFGQISAQRCALEA-------------------- 290
+ Y R+NP P S LSPY+HFG IS + E
Sbjct: 1 MSGYAELRSNPKPPEESYSSFLSPYIHFGHISQEEIVSEVLNWNLDGSWTPGVIIPENKN 60
Query: 291 RKARKLCPEA-IDTFLEELIVRRELADNFCFYQPNY-DSLKGAWEWARKSLKDHASDKRE 348
RK P+ +++FL+ELI R++ + +P++ L +W +K+L H +D R
Sbjct: 61 RKEGYFHPDPNVNSFLDELITWRDVGFLMFWKKPSFRKDLSILPDWIQKNLDFHKNDVRP 120
Query: 349 HIYTKEQFEKAQTADPV 365
+IYTKEQ E ++T D +
Sbjct: 121 YIYTKEQLENSKTHDVI 137
>gi|76157554|gb|AAX28442.2| SJCHGC08270 protein [Schistosoma japonicum]
Length = 165
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 47/90 (52%), Gaps = 5/90 (5%)
Query: 25 DKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLR 84
D K G V+YWM RDQRV+DNWA + A A K VP+ V F ++ R FM+
Sbjct: 79 DIKMG-VLYWMIRDQRVQDNWAFLFAQRLALKFKVPLHVCFCFVPKYQAETLRHYTFMIE 137
Query: 85 GLRLLQRNIEETFQILFFLFQGEAEDNIPN 114
GL+ +++ E L F + +IP+
Sbjct: 138 GLKEVEKECRE----LCIPFHITSASSIPD 163
>gi|424881257|ref|ZP_18304889.1| deoxyribodipyrimidine photolyase [Rhizobium leguminosarum bv.
trifolii WU95]
gi|392517620|gb|EIW42352.1| deoxyribodipyrimidine photolyase [Rhizobium leguminosarum bv.
trifolii WU95]
Length = 483
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 83/326 (25%), Positives = 123/326 (37%), Gaps = 61/326 (18%)
Query: 30 PVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAK---ARQLGFMLRGL 86
PV+ W +D R+ DN A+D A+++ P+ + + G A Q ++ L
Sbjct: 8 PVILWFRKDLRLDDN----RALDAAHRSGRPIIPLYISEPEASGTGPLGAAQAWWLHHSL 63
Query: 87 RLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTD--FSPLR------------ 132
L R++ E Q L GEA + + F+RE GA + + + P
Sbjct: 64 EALDRSLRER-QARLVLASGEALEVLCTFIRESGAEAVFWNRRYDPSGISIDAHIKHELE 122
Query: 133 ----EIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEK-------LEYSAKTLRGKIN 181
E R ++ + S +T + P W A E LE AK +I
Sbjct: 123 KQAIEARSFGGQLLHEPSRLMTGNGTPYRVYTPFWRALEGGGEPEQPLEAPAKL---RIA 179
Query: 182 KLLPEYLIDYPMLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVL 241
LP+ + +E W DW AV P GED A E L
Sbjct: 180 SQLPK--------SEALESWKLLPTKPDW-----AVHFTDLWTP-------GEDGAHEKL 219
Query: 242 KGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAI 301
+ F+ L Y +R+ P +P A S LSP+L FG+IS R R K A
Sbjct: 220 RA----FIEDALDGYKENRDYPARP-ATSLLSPHLAFGEISPARIWDATRGLSKRVAAAD 274
Query: 302 DTFLEELIVRRELADNFCFYQPNYDS 327
+ I RE + + F+ P S
Sbjct: 275 VVHFRKEIAWREFSYHLLFHFPRLAS 300
>gi|116753557|ref|YP_842675.1| deoxyribodipyrimidine photolyase-like [Methanosaeta thermophila PT]
gi|116665008|gb|ABK14035.1| Deoxyribodipyrimidine photolyase-like protein [Methanosaeta
thermophila PT]
Length = 114
Score = 57.4 bits (137), Expect = 1e-05, Method: Composition-based stats.
Identities = 31/75 (41%), Positives = 42/75 (56%), Gaps = 1/75 (1%)
Query: 58 NVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVR 117
N +AV F L QF GA R FML GLR L++ + + I F G+ + IP +
Sbjct: 6 NASLAVVFCLAPQFPGAGDRSYRFMLDGLRELEQRLS-SLGIAFIFTHGDPGNVIPEIID 64
Query: 118 ECGASLLVTDFSPLR 132
+ GA +L+ DFSPLR
Sbjct: 65 DSGAGMLIADFSPLR 79
>gi|395328781|gb|EJF61171.1| hypothetical protein DICSQDRAFT_61271 [Dichomitus squalens LYAD-421
SS1]
Length = 588
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 83/319 (26%), Positives = 126/319 (39%), Gaps = 74/319 (23%)
Query: 31 VVYWM-FRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGA---KARQLGFMLRGL 86
VVYWM D R+RDN A+ A QA K++VP+ V L Q A AR++ F+LR L
Sbjct: 69 VVYWMRMEDLRIRDNRAIAQASAQARKDSVPLIVLHVLSPQDYIAHDRSARKIDFVLRNL 128
Query: 87 RLLQRNIEETFQILFFLFQGEAEDNIPNFV----RECGASLLVTDFS----------PLR 132
++++ + E I + E IP F+ ++ AS L + L
Sbjct: 129 QIIRSRLSE-LDIPLYTVSHEPRTKIPAFIHGLLQQWKASHLFANMEYEVDELRRDIALS 187
Query: 133 EIRRCKDKI-CNRVSDSVTI--HEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLI 189
I R K+ C + D + EV + V S L +T + I++ +Y+
Sbjct: 188 GIARKHGKVSCTFLHDRCIVPPGEVTTKDGRGYTVYSPFL----RTWKSTIDQATSDYIG 243
Query: 190 DYPMLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPE--------------IGWC-ESGE 234
+ P+ P+ R + ++ EVP + C +GE
Sbjct: 244 EAPL---PVANDPAVRSHPVYSNLF------DVEVPHEVEGFTLDPKVRERMASCWPAGE 294
Query: 235 DAAMEVL-----------------------KGSKDGFLTKRLKNYPTDRNNPLKPRALSG 271
DAA EVL K +K+ RL Y D+ + + S
Sbjct: 295 DAAHEVLRRFLETMSRTSHLGVTDPLSESAKMAKNPSTQSRLGKY-NDQRDRVDADTTSR 353
Query: 272 LSPYLHFGQISAQRCALEA 290
+SPYL G ISA+ C EA
Sbjct: 354 MSPYLAAGVISARTCVREA 372
>gi|260427905|ref|ZP_05781884.1| deoxyribodipyrimidine photo-lyase [Citreicella sp. SE45]
gi|260422397|gb|EEX15648.1| deoxyribodipyrimidine photo-lyase [Citreicella sp. SE45]
Length = 475
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 73/303 (24%), Positives = 120/303 (39%), Gaps = 26/303 (8%)
Query: 30 PVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLL 89
P++ W+ RD R+ D+ A +H ++ + +PV + + D A +LG +GL
Sbjct: 8 PIIVWIRRDLRLTDH-AALHEAGRSGRPVIPVFIRDHGVDSLGAAPKWRLG---QGLGHF 63
Query: 90 QRNIEETFQILFFLFQGEAEDNIPNFVRECGASLL----VTDFSPLREIRRCKDKICNRV 145
+ + + L L G A + + + E A + D + + K + +R
Sbjct: 64 AKLLGDKGSRLV-LRAGPAREVLEALIDETAAGAVWWQRAYDPAAIERDTAVKAALKDRG 122
Query: 146 SDSVTIHEVDAHNVVPVWVASEKLEYSAKTL----RGKINKLLPEYLIDYPMLEQPIEKW 201
+D + H + W K K R + +PE L P P E W
Sbjct: 123 TD---VRSFAGHLLFEPWTVETKQGGYYKVYSPFWRAVCERDVPEPLA-APSKLTPPESW 178
Query: 202 TGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLKNYPTDRN 261
DW + A +R+G V E GE+ A L F+ + Y D
Sbjct: 179 PEGEALDDWQ--LGAAMRRGGPVVEAH-VRLGEETAQARLGA----FMANGVDGY-KDGR 230
Query: 262 NPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVRRELADNFCFY 321
N + SGLS L G+IS +C A +AR +T+ +EL V RE A + ++
Sbjct: 231 NLVAEDGCSGLSENLSLGEISPAQCWHAAMRARDAGKAGAETWAKEL-VWREFAYHLMWH 289
Query: 322 QPN 324
P+
Sbjct: 290 TPH 292
>gi|24586404|ref|NP_724615.1| CG18853 [Drosophila melanogaster]
gi|21627731|gb|AAG22302.2| CG18853 [Drosophila melanogaster]
gi|162944954|gb|ABY20546.1| TA01342p [Drosophila melanogaster]
Length = 330
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/51 (50%), Positives = 34/51 (66%)
Query: 315 ADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPV 365
ADNFCFY +YDSLKG WA ++L H DKR+ Y+ E+ EK+ T D +
Sbjct: 170 ADNFCFYNEHYDSLKGLSSWAYQTLDAHRKDKRDPCYSLEELEKSLTYDDL 220
>gi|325110039|ref|YP_004271107.1| deoxyribodipyrimidine photo-lyase type I [Planctomyces brasiliensis
DSM 5305]
gi|324970307|gb|ADY61085.1| deoxyribodipyrimidine photo-lyase type I [Planctomyces brasiliensis
DSM 5305]
Length = 502
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 74/312 (23%), Positives = 126/312 (40%), Gaps = 25/312 (8%)
Query: 25 DKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLR 84
D GPV+ W+ +D R+RDN AL A + V + D F G A ++
Sbjct: 21 DLSEGPVLVWLRQDLRLRDNPALYAAANTGRSVIVVYLLPNRNDDWFPGGAASW--WLHH 78
Query: 85 GLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICNR 144
L L N+ + L L G A + +C A+ + + R +K ++
Sbjct: 79 SLDALTTNLHKRHHQL-ILRSGSAATEMTRLAEDCKAAAVFWNRCYEPADRERDEKTADK 137
Query: 145 VSDS-VTIHEVDAHNVVPVWVASEKL--EYSAKTLRGKINKLLPEYLIDYPMLE--QPIE 199
++ + + ++ W S K Y T K + E+ P E + +
Sbjct: 138 LAQAGYQVRSFPGSLLIEPWTLSTKQGDPYQVFTPFWKAARSRVEFASPLPAPESLKTPD 197
Query: 200 KWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLKNYPTD 259
+W + + DW + L E PE + GEDAA + FL + Y T+
Sbjct: 198 QWPDSEELADWK--LLPTLDWADEFPER--WKPGEDAAHAAWQ----KFLDDNIAEYGTE 249
Query: 260 RNNPLKPRALSGLSPYLHFGQISAQRCALEA-------RKARKLCPEAIDTFLEELIVRR 312
R+ P S LSP+LH+G+IS ++ EA + A + + ++ +L E I R
Sbjct: 250 RDVPSH-HGTSRLSPHLHYGEISPRQIYAEAVEKMNRKQTATESFEKNVNVYLSE-IGWR 307
Query: 313 ELADNFCFYQPN 324
E + ++ P+
Sbjct: 308 EFGYHVLYHFPH 319
>gi|83594235|ref|YP_427987.1| deoxyribodipyrimidine photo-lyase type I [Rhodospirillum rubrum
ATCC 11170]
gi|386350987|ref|YP_006049235.1| deoxyribodipyrimidine photo-lyase type I [Rhodospirillum rubrum
F11]
gi|83577149|gb|ABC23700.1| Deoxyribodipyrimidine photo-lyase type I [Rhodospirillum rubrum
ATCC 11170]
gi|346719423|gb|AEO49438.1| deoxyribodipyrimidine photo-lyase type I [Rhodospirillum rubrum
F11]
Length = 478
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 84/325 (25%), Positives = 125/325 (38%), Gaps = 67/325 (20%)
Query: 30 PVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLG-----FMLR 84
PV+ W D R+ DN AL A+D + PV + F L D R LG ++ R
Sbjct: 4 PVLVWFRDDLRLADNPALCAALD----SGAPV-IPFYLLDDSTSDGHRPLGGATRWWLGR 58
Query: 85 GLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTD----FSPLRE-----IR 135
L L +I + L L +GEA +P E A+ L + LR+ +
Sbjct: 59 SLTSLAESIAQRGGRL-VLRRGEALSAVPELAAETDAAALFANRLYGMDSLRDDDLFMVL 117
Query: 136 RCKDKICNRVSDSVTIHEVDAHNV---------VPVWVASEKLEYSAKTLRGKINKLLPE 186
R + R+ DS +H +A P W KTL ++ LP
Sbjct: 118 RVA-GLTVRLFDSGLLHRPEAVTTKTGRPFRVFTPFW----------KTLSATLDPGLPL 166
Query: 187 YLID-YPMLEQP------IEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAME 239
D +P ++ P + W+ + DW + + G E+G A +E
Sbjct: 167 AAPDSFPPVDDPPPASDSLADWSLEPTTPDWAGGLRDTWQPG---------EAGAQARLE 217
Query: 240 VLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPE 299
F + +Y + R+ P KP S LSP+L FG+IS ++ AR
Sbjct: 218 A-------FFNGPVADYASGRDRPDKPLT-SKLSPHLRFGEISPRQVWTAARHHPPGG-- 267
Query: 300 AIDTFLEELIVRRELADNFCFYQPN 324
+D FL EL RE + F P
Sbjct: 268 GMDAFLREL-GWREFCHHLLFQAPT 291
>gi|347758242|ref|YP_004865804.1| DNA photolyase family protein [Micavibrio aeruginosavorus ARL-13]
gi|347590760|gb|AEP09802.1| DNA photolyase family protein [Micavibrio aeruginosavorus ARL-13]
Length = 476
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 77/311 (24%), Positives = 123/311 (39%), Gaps = 37/311 (11%)
Query: 30 PVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLG---FMLRGL 86
PV+ W +D R++DN A A ++ P+ F L D G R ++ L
Sbjct: 5 PVILWFRQDLRLQDN----PAYHAALESGSPILPVFILDDDNAGLWKRGAASRWWLYHSL 60
Query: 87 RLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTD--FSPLREIRRCKDKICNR 144
L +++ T I F+G+A IP V A + + + P R R K K
Sbjct: 61 SSLNKSLNGTLAI----FRGDATKIIPELVEAACAHAVFWNRCYEPWRIARDSKIKTALE 116
Query: 145 VSDSVTIHEVDAHNVVPVWVASEKLEYSAKTL-----RGKINKLLPEYLIDYPMLEQPIE 199
S S+ + +A + W S+ K +G + + P + P
Sbjct: 117 QS-SIAVKSSNASLLYEPWTVSKDDGTPYKVFTPFFRKGCLGRGEPPVPLGLP--HHVPT 173
Query: 200 KWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKD---GFLTKRLKNY 256
+ +QS+ D + +P I W + D G+++ FL LK Y
Sbjct: 174 FFPRLKQSLHIDDLDL--------LPSIKWDKGFHDIWTPGEHGARERLGQFLDHGLKGY 225
Query: 257 PTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEA---IDTFLEELIVRRE 313
RN+P + +S LSP+LHFG+IS + R A + P D FL EL RE
Sbjct: 226 KEGRNHPDR-ENVSRLSPHLHFGEISPRTAWHAVRHAMEADPTIETDGDCFLSEL-GWRE 283
Query: 314 LADNFCFYQPN 324
+ + + P+
Sbjct: 284 FSYSLLYTHPD 294
>gi|443475122|ref|ZP_21065081.1| Deoxyribodipyrimidine photo-lyase [Pseudanabaena biceps PCC 7429]
gi|443020045|gb|ELS34048.1| Deoxyribodipyrimidine photo-lyase [Pseudanabaena biceps PCC 7429]
Length = 489
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 85/330 (25%), Positives = 137/330 (41%), Gaps = 33/330 (10%)
Query: 7 PSTAVQPGRIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAF- 65
P A G+ R + G + + W RD R+ DN AL A+ Q + +
Sbjct: 2 PQIASNSGKNREILSGQI------ALVWHRRDLRIDDNPALSEAIAQVGDQGKVLGLFIF 55
Query: 66 --NLFDQFLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASL 123
++ D + + ++ FML LR LQ N L F++ GE ++ + + S
Sbjct: 56 DPDILDDGV-TEGSKVDFMLGCLRELQTNYRRLGSDLLFMY-GEPITSLCSLAKAINTSH 113
Query: 124 LV--TDFSPLREIRRCKDKICNRVSDSVTIHE-VDAHNVVPVWVASEKLE-YSAKT--LR 177
L D P I+R ++ V + VD + P +A++ E Y T R
Sbjct: 114 LFFNQDVEPF-AIKRDREATQALQEIGVKVQSFVDIGLIAPDAIATQAGEPYKVYTPFWR 172
Query: 178 GKINKLLPEYLIDYPMLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAA 237
+K P+ L D P +K TG + I LR+ + +I ESGE AA
Sbjct: 173 NWQSKPKPQPL-DAP------QKLTGLASYENLPVIPLPSLRELKFINDITLPESGESAA 225
Query: 238 MEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLC 297
+ +L+ DG + Y T+R+ P S LSP+L FG + +R +A A++L
Sbjct: 226 LALLEAFCDG---NGILRYQTERDFPAH-AGTSTLSPHLRFGTVGIRRVWEKAIAAQQLV 281
Query: 298 PEAID----TFLEELIVRRELADNFCFYQP 323
D T ++ + RE + F+ P
Sbjct: 282 RSDEDLAGITIWQQELAWREFYQHVLFHFP 311
>gi|254450032|ref|ZP_05063469.1| deoxyribodipyrimidine photolyase [Octadecabacter arcticus 238]
gi|198264438|gb|EDY88708.1| deoxyribodipyrimidine photolyase [Octadecabacter arcticus 238]
Length = 469
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 79/305 (25%), Positives = 125/305 (40%), Gaps = 30/305 (9%)
Query: 30 PVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFML-RGLRL 88
PV+YW+ RD R+ DN AL A + PV +A + D+ + F L G+R+
Sbjct: 3 PVIYWVRRDFRIGDNAAL----SAACASGRPV-IALFICDEVVEGHGAAPKFRLGEGVRV 57
Query: 89 LQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTD--FSPLREIRRCKDKICNRVS 146
+ E L L +G+A + V + G + + + P + R K +
Sbjct: 58 FGAALAEAGSRL-ILRRGDALAVLRELVVQTGVQAIYWNRLYDPASKARDTGVKAALK-D 115
Query: 147 DSVTIHEVDAHNVVPVWVASEKLE--YSA-----KTLRGKINKLLPEYLIDYPMLEQPIE 199
D + + H + W K Y KT+RG+ P I P +
Sbjct: 116 DGIEVASFAGHLLFEPWTVETKTGGFYRVFTPLWKTVRGR-EVATP---IAAPASVPVPD 171
Query: 200 KWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLKNYPTD 259
W + Q DW + +R+G +V C GE+AA L D F+ +R+++Y T+
Sbjct: 172 VWPASDQLDDWK--LGGAMRRGRDVLAAHIC-VGEEAARSRL----DTFIDERVQSYQTN 224
Query: 260 RNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVRRELADNFC 319
R+ P S LS L +G+IS C A + F +EL V RE A +
Sbjct: 225 RDMP-SVDGTSRLSENLTYGEISPAVCWHAGWAAIHSGKGQAEVFCKEL-VWREFAYHLV 282
Query: 320 FYQPN 324
+ P+
Sbjct: 283 HHTPH 287
>gi|242786746|ref|XP_002480866.1| deoxyribodipyrimidine photo-lyase Phr1, putative [Talaromyces
stipitatus ATCC 10500]
gi|218721013|gb|EED20432.1| deoxyribodipyrimidine photo-lyase Phr1, putative [Talaromyces
stipitatus ATCC 10500]
Length = 593
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 79/285 (27%), Positives = 130/285 (45%), Gaps = 21/285 (7%)
Query: 26 KKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKAR---QLGFM 82
K R VV+W D R+ DN AL A + A KN +P+ + + Q L A ++ F
Sbjct: 94 KPRNAVVHWFKGDLRLNDNRALKMASELAAKNEIPLVCMYIMSPQDLTAHCSSPARVDFT 153
Query: 83 LRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVREC----GASLLVTDFS-PLREIRRC 137
LR LR+LQR + T I ++ E NIP + E GAS L + + E+RR
Sbjct: 154 LRNLRVLQREL-GTLDIPLYIETQERRRNIPERIGELCEQWGASHLFANIEYEVDELRR- 211
Query: 138 KDKICNRVSDSVTIHEV--DAHNVVPVWVASEK-LEYSAKT--LRGKINKLLPEYLIDYP 192
+ K+ ++D E D+ V P + S++ +Y+ + R + L +
Sbjct: 212 EAKLVRLLADKGIAFETAHDSCVVTPGALQSQQGKQYAVYSPWYRAWMGYLHQHGDHNLR 271
Query: 193 MLEQPIEKWTGTRQSID--WDSII--AAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGF 248
+LE P + R +DS I A+ R+ ++ + + + + E K D F
Sbjct: 272 VLEPPGKNHESARSHFGDLFDSQIPGASENRRLSDEEKQRFEKMYPEGEQEARK-RLDEF 330
Query: 249 LTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKA 293
+T R+K Y R+ + + + LSPYL G +SA+ +A+ A
Sbjct: 331 ITTRVKEYSKKRSM-VDGQYTAILSPYLASGVLSARTAVSKAKDA 374
>gi|242786742|ref|XP_002480865.1| deoxyribodipyrimidine photo-lyase Phr1, putative [Talaromyces
stipitatus ATCC 10500]
gi|218721012|gb|EED20431.1| deoxyribodipyrimidine photo-lyase Phr1, putative [Talaromyces
stipitatus ATCC 10500]
Length = 771
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 80/286 (27%), Positives = 131/286 (45%), Gaps = 23/286 (8%)
Query: 26 KKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKAR---QLGFM 82
K R VV+W D R+ DN AL A + A KN +P+ + + Q L A ++ F
Sbjct: 272 KPRNAVVHWFKGDLRLNDNRALKMASELAAKNEIPLVCMYIMSPQDLTAHCSSPARVDFT 331
Query: 83 LRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVREC----GASLLVTDFS-PLREIRRC 137
LR LR+LQR + T I ++ E NIP + E GAS L + + E+RR
Sbjct: 332 LRNLRVLQREL-GTLDIPLYIETQERRRNIPERIGELCEQWGASHLFANIEYEVDELRR- 389
Query: 138 KDKICNRVSDSVTIHEVDAHN---VVPVWVASEK-LEYSAKT--LRGKINKLLPEYLIDY 191
+ K+ ++D E AH+ V P + S++ +Y+ + R + L +
Sbjct: 390 EAKLVRLLADKGIAFET-AHDSCVVTPGALQSQQGKQYAVYSPWYRAWMGYLHQHGDHNL 448
Query: 192 PMLEQPIEKWTGTRQSID--WDSII--AAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDG 247
+LE P + R +DS I A+ R+ ++ + + + + E K D
Sbjct: 449 RVLEPPGKNHESARSHFGDLFDSQIPGASENRRLSDEEKQRFEKMYPEGEQEARK-RLDE 507
Query: 248 FLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKA 293
F+T R+K Y R+ + + + LSPYL G +SA+ +A+ A
Sbjct: 508 FITTRVKEYSKKRSM-VDGQYTAILSPYLASGVLSARTAVSKAKDA 552
>gi|85708828|ref|ZP_01039894.1| hypothetical protein NAP1_06295 [Erythrobacter sp. NAP1]
gi|85690362|gb|EAQ30365.1| hypothetical protein NAP1_06295 [Erythrobacter sp. NAP1]
Length = 463
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 76/307 (24%), Positives = 127/307 (41%), Gaps = 34/307 (11%)
Query: 30 PVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQF-----LGAKARQLGFMLR 84
P + W+ RD R+ DN AL HA PV + L D+ +G +R ++
Sbjct: 4 PQILWLRRDLRMADNPALYHAAKAG-----PVVCVYVLDDEAPEHHRMGGASRW--WLHH 56
Query: 85 GLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLV--TDFSPL--REIRRCKDK 140
L L +++ T L +G+A + + GA + T + P + ++ KD+
Sbjct: 57 SLESLSKSL-GTRNAKLILRRGDAVEELTTVANAVGADTIHANTHYEPWWRKAQKKLKDE 115
Query: 141 ICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQPIEK 200
I ++ D V + A +V + + + + +L P ++ P +
Sbjct: 116 IDLQLYDGVYL--FPAGHVTT--GSGDPYKIYTPFYKALRQELPPRDVLPEPETLSSPDD 171
Query: 201 WTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLKNYPTDR 260
W + + DW+ + G + E GEDAA E L +D + +Y R
Sbjct: 172 WPASDELADWNLLPTKPDWSGGIA---DFWEVGEDAAHERLSEWED-----HVADYEDKR 223
Query: 261 NNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVRRELADNFCF 320
N P + S LSP+LHFG+IS + + R + ++F ELI R A+ C
Sbjct: 224 NFPSVDKT-SRLSPHLHFGEISPVQVWHALKHKRS---DGWNSFESELIWRDYAANVICE 279
Query: 321 YQPNYDS 327
Y P Y S
Sbjct: 280 Y-PAYAS 285
>gi|309791051|ref|ZP_07685587.1| Deoxyribodipyrimidine photo-lyase [Oscillochloris trichoides DG-6]
gi|308226906|gb|EFO80598.1| Deoxyribodipyrimidine photo-lyase [Oscillochloris trichoides DG6]
Length = 459
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 73/315 (23%), Positives = 121/315 (38%), Gaps = 43/315 (13%)
Query: 31 VVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQ 90
+++W RD R+ DN AL A + + +PV + L A + F++ GLR L
Sbjct: 2 IIHWFRRDLRLSDNPALSAAALASGGHVLPVYILDPTLLNGLWASPARSAFLIAGLRALD 61
Query: 91 RNIEETFQILFFLFQGEAEDNIPNFVRECGASLLV--TDFSPLREIRRCKDKICNRVSDS 148
++ + + GE + + V E GAS + D+SP R + +
Sbjct: 62 AQLQH-HGLRLIVRHGEPVATLLHLVAETGASAVTWNRDYSPYSRRRDQAIEAALHAAGC 120
Query: 149 VTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQPIEKWTGTRQSI 208
H D P +++L + Y + +W
Sbjct: 121 AVQHTHDVAICPP-------------------DQILTKNATPYSVYTPYARQWRTWLAHA 161
Query: 209 DWDSIIAAVLRKGAEVP----------EIGWCESGEDAAMEVLKGSKDGFLTKRLKNYPT 258
D + A +L+ ++P +GE AA +L D F L+ Y T
Sbjct: 162 DLRPVAAPILQPCRDLPVSHAIPDLLAPHPLPPAGELAAQTIL----DEFTRTSLRTYAT 217
Query: 259 DRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVRRELADNF 318
R+ P P S LSPYL FG I+ ++C A+ DT++ EL R+
Sbjct: 218 QRDLPAVP-GTSRLSPYLRFGMIAVRQCLAVAQAHPG---PGADTWIAEL-AWRDFYIQV 272
Query: 319 CFYQPNYDSLKGAWE 333
F+ P+ L+GA++
Sbjct: 273 LFHHPHV--LRGAFK 285
>gi|114321405|ref|YP_743088.1| deoxyribodipyrimidine photo-lyase type I [Alkalilimnicola ehrlichii
MLHE-1]
gi|114227799|gb|ABI57598.1| deoxyribodipyrimidine photo-lyase type I [Alkalilimnicola ehrlichii
MLHE-1]
Length = 479
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/96 (38%), Positives = 53/96 (55%), Gaps = 8/96 (8%)
Query: 231 ESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEA 290
++GE AA+ L + F RL Y DR+ P +P SGLSP LHFG++S ++ +
Sbjct: 204 QAGESAALARL----EAFAADRLARYAQDRDRPAEP-GTSGLSPALHFGELSPRQVWWQV 258
Query: 291 RKARKL-CPE-AIDTFLEELIVRRELADNFCFYQPN 324
AR+ PE A +TFL EL RE A + + P+
Sbjct: 259 MAAREAGVPEDACETFLSELGW-REFAHHLLWSHPD 293
>gi|90419365|ref|ZP_01227275.1| putative deoxyribodipyrimidine photolyase [Aurantimonas
manganoxydans SI85-9A1]
gi|90336302|gb|EAS50043.1| putative deoxyribodipyrimidine photolyase [Aurantimonas
manganoxydans SI85-9A1]
Length = 483
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 73/298 (24%), Positives = 120/298 (40%), Gaps = 35/298 (11%)
Query: 30 PVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLL 89
P+V W+ D R+ DN AL A D + + VP+ V D ++ L+
Sbjct: 9 PIVVWLRDDLRLDDNPALAEAAD-SGRPVVPLVVLDEESDGVRSLGGTHKWWLHHSLQCF 67
Query: 90 QRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICNRVSDSV 149
+++ + L L +G+A +++ + V GA+ L+ + + R D + + V
Sbjct: 68 GKDLADKGAPLI-LRRGKASEHVVDIVESTGATTLLMNRRYDQASRAVDDAVEAALGSDV 126
Query: 150 TIHEVDA---HNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYP-----MLEQP---- 197
+ A H+ V + + + P ID P + +QP
Sbjct: 127 EVQRFTANILHDPDKVRTKTGGWYKVYTPFWKNLAEDEPRDPIDPPDKLASLDDQPRSDR 186
Query: 198 IEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLKNYP 257
+E+W DW IAA + GE AA E + D +L +YP
Sbjct: 187 LEEWDLLPTRPDWSGGIAAFWK------------VGEAAAHERFEEFSDEWLN----DYP 230
Query: 258 TDRNNPLKPRALSGLSPYLHFGQISAQR---CALEARKARKLCP-EAIDTFLEELIVR 311
R+ P A S +SP+L +G+IS R A RK P +A+ TF +EL+ R
Sbjct: 231 DGRDRP-GDDATSRMSPHLRWGEISPYRLWHMAEACANRRKTIPGDALKTFKKELVWR 287
>gi|83644572|ref|YP_433007.1| deoxyribodipyrimidine photolyase [Hahella chejuensis KCTC 2396]
gi|83632615|gb|ABC28582.1| Deoxyribodipyrimidine photolyase [Hahella chejuensis KCTC 2396]
Length = 481
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 74/303 (24%), Positives = 124/303 (40%), Gaps = 43/303 (14%)
Query: 31 VVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKAR---QLGFMLRGLR 87
++W D R RDN AL A +A + N + F + + + +L FMLR L+
Sbjct: 4 TLHWFRNDLRTRDNPALYAAAQRAREQNSELIACFLVSPEQWRSHDMADIKLDFMLRNLK 63
Query: 88 LLQRNIEETFQILFFLFQGEAEDNIPNFV------RECGASLLVTDFSPLREIRRCKDKI 141
LQ + + I F+ D P + +C A +F + E RR K
Sbjct: 64 ALQAELAK-LNIPLFILDAPRFDEAPTKLLTLMQQHQCSALTFNEEFG-VNERRRDKAVK 121
Query: 142 CNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLID-YPMLEQPIEK 200
++ + + +++P S +T +G + Y + + IE
Sbjct: 122 ETLNAEGLEALKFRDQSILPA--------GSIRTGQGTPYAVFTPYKRAWFSQCPEHIEL 173
Query: 201 WTGTRQSIDWDSIIAAVLRKGAEVPEI--GWCE-------SGEDAAMEVLKGSKDGFLTK 251
W + + + +VPE G+ + +GEDAA++ L D FL
Sbjct: 174 WPEPAKQP------SPMQTPEGDVPESVSGFDKVSSQTYAAGEDAALQKL----DDFLEH 223
Query: 252 RLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCP---EAIDTFLEEL 308
++ Y R+ P +S LSPYL G +S ++C A++ R P E +DT++ EL
Sbjct: 224 KVDRYHEQRDFPAI-DGVSQLSPYLALGVLSGRQCFHAAQRHRHASPNASEGVDTWINEL 282
Query: 309 IVR 311
I R
Sbjct: 283 IWR 285
>gi|451981013|ref|ZP_21929393.1| Deoxyribodipyrimidine photo-lyase [Nitrospina gracilis 3/211]
gi|451761776|emb|CCQ90640.1| Deoxyribodipyrimidine photo-lyase [Nitrospina gracilis 3/211]
Length = 483
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 77/319 (24%), Positives = 134/319 (42%), Gaps = 47/319 (14%)
Query: 34 WMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQ-RN 92
W+ RD R+RD+ AL A QA + V N+ + R++ F+ L+ +Q R
Sbjct: 10 WVRRDLRLRDHTALTAATRQAREVIVVFVFDTNILRKLEDKDDRRVNFIHHSLKEMQARL 69
Query: 93 IEETFQILFFLFQGEAEDNIPNFVRECGASLLVT--DFSPLREIRRCKDKICNRVSDSVT 150
+++ +L + G+ +IP +E + T D+ P R +D+I V +
Sbjct: 70 VKKGADLL--VCHGDPVLDIPRLAQELKVDAVFTNRDYDPYA---RKRDRI---VEQKLK 121
Query: 151 IHEVDAHNVVPVWV---------ASEKLEYSAKTLRGKINKLLPEYLID-YPMLEQ--PI 198
I +V H+ + V E + + L PE++ + P L++ P+
Sbjct: 122 IWDVTFHSYMDQVVFEYPDIATRQGEPFKVFTPYKNAWLGALRPEHVAEEKPNLKRLAPV 181
Query: 199 EKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLKNYPT 258
+ + + D S+ G + E+ W + GE+ A + K + Y
Sbjct: 182 KVFKEWIEPWDLGSL-------GFKENEL-WVQPGEEGARAAWRK-----FQKYIHRYHK 228
Query: 259 DRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVR---RELA 315
DR+ P SGLS +L FG IS + R A E T+L ELI R + +
Sbjct: 229 DRDFPALKHGTSGLSVHLRFGTISIREL---VRNAMGRKNEGARTWLSELIWRDFYQTIL 285
Query: 316 DNFCF-----YQPNYDSLK 329
D + + ++P YDS++
Sbjct: 286 DRYSYVVRGAFRPEYDSIR 304
>gi|159044861|ref|YP_001533655.1| deoxyribodipyrimidine photo-lyase [Dinoroseobacter shibae DFL 12]
gi|157912621|gb|ABV94054.1| deoxyribodipyrimidine photo-lyase [Dinoroseobacter shibae DFL 12]
Length = 476
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 81/331 (24%), Positives = 136/331 (41%), Gaps = 26/331 (7%)
Query: 23 SLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFM 82
S R PV++W+ RD R+ DN AL+ AV + +PV + + D LGA A + F
Sbjct: 2 SSQTDRAPVIWWVRRDLRLSDNRALVAAV-ETGAPVIPVFLCDPILDS-LGA-APKWRFG 58
Query: 83 LRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTD--FSPLREIRRCKDK 140
L L + ++++ +G+A + + V E GA + + P ++ R K
Sbjct: 59 LGAAALDAALRDRGSRLIY--RKGDALETLRALVSETGAETVYWSRAYDP-DQVARDKAV 115
Query: 141 ICNRVSDSVTIHEVDAHNVVPVWVASEKLE--YSAKT--LRGKINKLLPEYLIDYPMLEQ 196
D V H ++ W Y T + ++ +PE +
Sbjct: 116 KSGLQDDGVDARSFTGHLLIEPWTVETGSGGFYKVYTPFWKAVRDRAMPEPQPAPDRIPA 175
Query: 197 PIEKWTGTRQSIDWDSIIAAVLRKGAEV--PEIGWCESGEDAAMEVLKGSKDGFLTKRLK 254
P + W + + W + A + +GA + P + GEDAA +G F+ R+
Sbjct: 176 P-DNWPESDRLDYW--ALGAAMNRGAAIVAPHLA---IGEDAA----RGRLGAFIAHRVG 225
Query: 255 NYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVRREL 314
+Y R+ P S LS L +G+I C ++A +TFL+EL V RE
Sbjct: 226 DYDRARDIP-GIEGTSRLSENLTYGEIGPATCWQAGQRALAEGKAGAETFLKEL-VWREF 283
Query: 315 ADNFCFYQPNYDSLKGAWEWARKSLKDHASD 345
A + ++ P+ EW +D +D
Sbjct: 284 AYHLVWHTPHLIEKNWRAEWDHFPWRDDNAD 314
>gi|392568851|gb|EIW62025.1| hypothetical protein TRAVEDRAFT_44861 [Trametes versicolor
FP-101664 SS1]
Length = 572
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 87/322 (27%), Positives = 124/322 (38%), Gaps = 75/322 (23%)
Query: 31 VVYWM-FRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAK---ARQLGFMLRGL 86
VVYWM D R+RDN AL HA QA K+ VP+ F L Q A AR++ F LR L
Sbjct: 54 VVYWMRMEDMRIRDNRALAHASAQAQKDGVPLLALFVLSPQDYAAHDRGARRIDFTLRIL 113
Query: 87 RLLQRNIEETFQILFFLFQGEAEDNIPNFVREC----GASLLVTDFS-PLREIRRCKDKI 141
++ + + I + IP+F+ + AS L + + E+RR
Sbjct: 114 ENIKSELAK-LDIPLYTTSHSPRTKIPSFIHDLLLQWNASHLFGNIEYEVDELRR----- 167
Query: 142 CNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLR---GKINKLLPEYLIDY-PMLEQ- 196
D H V +K +R G+ + +L + P+LE+
Sbjct: 168 -----DLALCQIAKKHGKVACLFGHDKCIMPPGDVRTKDGRGYTVYSPFLRSWAPLLEKA 222
Query: 197 --------PIEKWTGTRQSIDWDSIIAAVLRKGAEVP-EIGWCESG-------------- 233
P+ K S+ + AA+ + EVP E+ G
Sbjct: 223 SSHHLDELPLPK--ANNPSVRQHPVFAALFK--IEVPREVTGFSLGPEERERISTFWHAE 278
Query: 234 EDAAMEVLK--------------------GSKDGFLTK--RLKNYPTDRNNPLKPRALSG 271
E AA E+L+ G++D TK RL Y D + + S
Sbjct: 279 EQAAHEMLRRFLSTAARPTQFGAVDPLTHGAQDVDPTKKSRLAKY-GDARDRMDADTTSR 337
Query: 272 LSPYLHFGQISAQRCALEARKA 293
LSPYL G ISA+ C EA KA
Sbjct: 338 LSPYLSAGVISARACVREALKA 359
>gi|227114750|ref|ZP_03828406.1| deoxyribodipyrimidine photolyase [Pectobacterium carotovorum subsp.
brasiliensis PBR1692]
Length = 492
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 77/294 (26%), Positives = 126/294 (42%), Gaps = 30/294 (10%)
Query: 32 VYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQR 91
V W+ D RV DN AL A N + V +A + + RQ F+L LRL+Q+
Sbjct: 9 VVWLRNDLRVTDNLALYAACQDPNATVLAVFIATPVQWEKHDMAPRQAAFLLENLRLVQQ 68
Query: 92 NIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTD--FSPLREI-RRCKDK-ICNRVSD 147
+ E L + + ++ V+ C A TD ++ EI R +DK + +R++D
Sbjct: 69 ALAEKGIPLHYHECADFAASVDWLVQFC-AQQQATDLFYNYQYEINERLRDKQVKDRLAD 127
Query: 148 SVTIHEVDAHNVVP---VWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQPIEKWTGT 204
SV H ++P V + ++ R K L E D + P +
Sbjct: 128 SVVCHGYHDSLLLPPGSVLTGNGEMYKVFTPFRQAFIKRLLE--SDTTCVPAPDARGEPI 185
Query: 205 RQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPL 264
++ +A EV + SGE AA++ L+ F +++++Y R+ P
Sbjct: 186 NNMVE----LAPFSYPQREVDGDDF-PSGERAALQQLR----RFCREQVQDYDQQRDFPA 236
Query: 265 KPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAID-------TFLEELIVR 311
P S LSPYL G +S ++C + R CPE ++ T+ EL+ R
Sbjct: 237 LP-GTSKLSPYLALGIVSPRQC---FNRLRAECPEMLERREGGAFTWFNELVWR 286
>gi|345872727|ref|ZP_08824656.1| DNA photolyase FAD-binding [Thiorhodococcus drewsii AZ1]
gi|343918048|gb|EGV28819.1| DNA photolyase FAD-binding [Thiorhodococcus drewsii AZ1]
Length = 477
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 79/314 (25%), Positives = 134/314 (42%), Gaps = 44/314 (14%)
Query: 31 VVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQ 90
+ W RD R+ DN AL A+ + + +PV + + A ++ R L+ L
Sbjct: 3 AILWFRRDLRLDDNPALAAAL-ASGRPVLPVYIHAPHEEAPWAPGAASRWWLHRSLQSLD 61
Query: 91 RNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIR-RCKDKICNRVSDSV 149
R++++ L+ + +G++ + V GA+ + ++ L + R R +D + +
Sbjct: 62 RSLQDRGSRLW-ITRGDSLAELRRIVAATGAAEV--HWNRLYDPRIRDRDAAIEQAIRAD 118
Query: 150 TIHEVDAHNVVPVWVASEKLEYSAKTLR------GKINKLLPEYLIDYPMLEQPIEKWTG 203
+H ++HN ++ E L + R K LP+ QP T
Sbjct: 119 GLH-CESHNGSLLFEPWEILTAQGQPYRVFSAFWRNATKRLPDI--------QP----TA 165
Query: 204 TRQSIDWDSIIAAV----LRKGAEVPEIGW-------CESGEDAAMEVLKGSKDGFLTKR 252
+ I W I + ++ A PEI W GE AA ++ FL R
Sbjct: 166 PTKDIQWTRIEPPLPGLEIKDLALQPEIAWDAGLQETWTPGEQAAQDMAAH----FLDTR 221
Query: 253 LKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCP--EAIDTFLEELIV 310
L Y DR+ P P S LSP+LHFG+IS +R LE ++R P + + F+ E +
Sbjct: 222 LSRYGEDRDRPDMP-GTSRLSPHLHFGEISPRRL-LELTRSRVADPSEDPAEPFIRE-VG 278
Query: 311 RRELADNFCFYQPN 324
RE A + ++ P
Sbjct: 279 WREFAHHLLYHFPQ 292
>gi|426198450|gb|EKV48376.1| CPD photolyase [Agaricus bisporus var. bisporus H97]
Length = 562
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 54/92 (58%), Gaps = 5/92 (5%)
Query: 17 RVLKQGSLDKKRGPVV-YWM-FRDQRVRDNWALIHAVDQANKNNVPVAVAFNLF--DQFL 72
++++ G D +G VV YWM F D R+ DN AL A +QA K+ +P+AV F L D F
Sbjct: 18 QLIEHGMPDPDKGKVVFYWMRFADLRITDNRALHKASEQAQKDGIPLAVLFVLSPEDYFA 77
Query: 73 GAK-ARQLGFMLRGLRLLQRNIEETFQILFFL 103
+ +R++ F+LR L+LLQ + L+ +
Sbjct: 78 HDRSSRRIDFVLRNLKLLQEAFSKLHIPLYVI 109
>gi|302924301|ref|XP_003053859.1| predicted protein [Nectria haematococca mpVI 77-13-4]
gi|256734800|gb|EEU48146.1| predicted protein [Nectria haematococca mpVI 77-13-4]
Length = 597
Score = 51.6 bits (122), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 84/302 (27%), Positives = 126/302 (41%), Gaps = 25/302 (8%)
Query: 31 VVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKAR---QLGFMLRGLR 87
VV+W D R+ DN AL A D+A + VP+ F + Q A R ++ FMLR L
Sbjct: 104 VVHWFKMDLRISDNKALALASDKAKQAGVPLIAMFIVSPQDYEAHLRAPVRVDFMLRTLA 163
Query: 88 LLQRNIEETFQILFFLFQGEAEDNIPN----FVRECGASLLVTDFS-PLREIRRCKDKIC 142
+L+ ++ + I ++ E NIP+ + E GAS + + + E+RR I
Sbjct: 164 VLKEDLAK-LDIPLYVETVEKRRNIPDRILELMDEWGASHMYANMEYEVDELRREAAMIR 222
Query: 143 NRVSDSVTIHEVDAHNVVP---VWVASEKLEYSAKT--LRGKINKLL--PEYLIDY-PML 194
+ + V VVP + + K +Y+ T R + + P+ L Y P
Sbjct: 223 DFAENGKAFEAVHDTCVVPPGKLQTGAGK-QYAVYTPWYRAWVAHIHENPDLLELYDPPE 281
Query: 195 EQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLK 254
+ P ++ D D I A K + E S K D F + +
Sbjct: 282 KNPASARKTFKKLFDID-IPDAPKNKQLDTEEKKRLRSLWPCGEHEAKKRLDKFCEEMIG 340
Query: 255 NYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEAR---KARKL--CPEAIDTFLEELI 309
NY RN P S LS +L G ISA+ C AR K +KL E I T++ E+
Sbjct: 341 NYHKKRNIP-SDLGTSCLSVHLASGTISARTCVRTARDRNKTKKLNAGSEGIQTWISEVA 399
Query: 310 VR 311
R
Sbjct: 400 WR 401
>gi|149202510|ref|ZP_01879482.1| Deoxyribodipyrimidine photolyase [Roseovarius sp. TM1035]
gi|149143792|gb|EDM31826.1| Deoxyribodipyrimidine photolyase [Roseovarius sp. TM1035]
Length = 473
Score = 51.6 bits (122), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 79/309 (25%), Positives = 127/309 (41%), Gaps = 24/309 (7%)
Query: 30 PVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLL 89
P + W+ RD R+ D+ AL A+ +PV + + A +LG L L
Sbjct: 6 PSIVWLRRDLRLADHPALCAAL-AGGGAVIPVFIHDESVEALGAAPKWRLGLSLASL--- 61
Query: 90 QRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTD--FSPLREIRRCKDKICNRVSD 147
R++ L L +G A D + V E GA + + P + I R K
Sbjct: 62 ARDLAACGSRLI-LRRGAALDVLRALVAETGAGAVHWSRLYDP-QSIARDKAVKSALREA 119
Query: 148 SVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPML---EQPIEK-WTG 203
V H + W K + + + + + + P+ + P K W
Sbjct: 120 GVDAQSHPGHVMFEPWTVETKTGGFYRVY-SPMWRAVKDRDVAVPLTAPGQIPAPKVWPA 178
Query: 204 TRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNP 263
+ DW + A + +GA+V + + GE AAME L DG + + Y RN P
Sbjct: 179 SDSLDDWQ--MGAAMYRGADVC-LPYQRVGEAAAMERLHAFADGAIAE----YQDARNFP 231
Query: 264 LKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVRRELADNFCFYQP 323
A S LS L +G+IS ++C ++A + +T+L+EL V RE A + ++ P
Sbjct: 232 AV-DATSALSENLTYGEISPRQCWHAGQRALHGGAKGAETWLKEL-VWREFAYHLMYHTP 289
Query: 324 NYDSLKGAW 332
+ L G W
Sbjct: 290 HI--LSGNW 296
>gi|294085609|ref|YP_003552369.1| deoxyribodipyrimidine photo-lyase [Candidatus Puniceispirillum
marinum IMCC1322]
gi|292665184|gb|ADE40285.1| Deoxyribodipyrimidine photo-lyase [Candidatus Puniceispirillum
marinum IMCC1322]
Length = 477
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 79/324 (24%), Positives = 131/324 (40%), Gaps = 51/324 (15%)
Query: 31 VVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQ 90
+++W +D R+ DN +L+ A + + + N D GA R ++ L L
Sbjct: 6 IIHWFRQDLRLADNPSLVAAAQAGDVLPLFILDDDNAGDHKTGAAGRS--WLHHALNALN 63
Query: 91 RNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTD--FSPLREIRRCKDKICNRVSDS 148
+++ ++ +G+ D IP V + GAS + + + P R I R K N +++
Sbjct: 64 MSLDGKLCVM----RGDPVDIIPKLVAKVGASGVFWNRCYEPWR-IARDKMLKTNLTNNN 118
Query: 149 VTIHEVDAHNVVPVWVA--SEKLEYSAKT---LRGKINKLLPEYLIDYPMLEQPIEKWTG 203
+ + + + W + Y T RG +N P + P Q +
Sbjct: 119 IQVESFNGSLLWEPWTVLKGDGTPYRVFTPFYRRGCLNAAPPRLPLARPDAMQLVAD-PE 177
Query: 204 TRQSIDWDSIIAAVLRKGAEVPEIGWC-------ESGEDAAMEVLKGSKDGFLTKRLKNY 256
+ SID +++ P+ W + GE AAM L F+ L Y
Sbjct: 178 SSMSIDALNLL----------PDHDWGAKMASHWQIGEAAAMTRLH----DFVEGGLNGY 223
Query: 257 PTDRNNPLKPRALSGLSPYLHFGQIS---AQRCALEARKARKLCPEAIDTFLEELIVRRE 313
RN P +P S LS +LH+G+IS A A+E R + ID FL EL RE
Sbjct: 224 KDGRNFPARPHT-SRLSAHLHWGEISPNMAWYAAIEKRDQAGFDND-IDVFLSEL-GWRE 280
Query: 314 LADNFCFY---------QPNYDSL 328
+ + ++ QP +DS
Sbjct: 281 FSHSLLYHFPHLPRQNLQPKFDSF 304
>gi|389751445|gb|EIM92518.1| hypothetical protein STEHIDRAFT_143862 [Stereum hirsutum FP-91666
SS1]
Length = 559
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 34/83 (40%), Positives = 45/83 (54%), Gaps = 5/83 (6%)
Query: 26 KKRGPVVYWM-FRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGA---KARQLGF 81
+K VVYWM D R+ DN AL A +QA K +VP+ V F + Q A R++ F
Sbjct: 40 RKGDAVVYWMRMEDMRISDNRALHQASEQAKKEDVPLLVLFTISPQDYAAHDRSPRRIDF 99
Query: 82 MLRGLRLLQRN-IEETFQILFFL 103
LR LR LQ + +EE F L +
Sbjct: 100 TLRNLRCLQASLVEELFVPLHIV 122
>gi|46107828|ref|XP_380973.1| hypothetical protein FG00797.1 [Gibberella zeae PH-1]
Length = 635
Score = 51.2 bits (121), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 81/310 (26%), Positives = 131/310 (42%), Gaps = 41/310 (13%)
Query: 31 VVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKAR---QLGFMLRGLR 87
VV+W D R+ DN AL A D+A + VP+ + + Q A R ++ FMLR L
Sbjct: 143 VVHWFKMDLRISDNRALALASDKAKEAGVPLIALYIISPQDYEAHLRAPVRIDFMLRTLS 202
Query: 88 LLQRNIEETFQILFFLFQGEAEDNIPN----FVRECGASLLVTDFS-PLREIRRCKDKIC 142
+++ ++ + I ++ E ++P+ + E GAS L + + E+RR I
Sbjct: 203 VIKEDLAK-LDIPLYVETVEKRKHLPDRILELMDEWGASHLYANMEYEVDELRREAAMIK 261
Query: 143 NRVSDSVTIHEVDAHNVVP-----VWVASEKLEYSA--KTLRGKINKLLPEYLIDYPMLE 195
+ + V +VP + Y+ KT I++ L D L
Sbjct: 262 DFAENGKAFEVVHDTCIVPPGELHTGAGKQYAVYTPWFKTWIAHIHENL-----DLLELY 316
Query: 196 QPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCES---------GEDAAMEVLKGSKD 246
+P EK + + + + A + + + +G E GE A + L D
Sbjct: 317 EPPEKNPDSARK-KFKKLFNAEIPEAPKSKRLGDEEKERLRSLWPCGEHEAKKRL----D 371
Query: 247 GFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEAR---KARKL--CPEAI 301
F +R+ NY RN P A S LS +L G ISA+ C AR K +KL + I
Sbjct: 372 KFCEERIGNYHEKRNIPADA-ATSSLSVHLASGTISARTCVRTARDRNKTKKLNGGNDGI 430
Query: 302 DTFLEELIVR 311
T++ E+ R
Sbjct: 431 QTWISEVAWR 440
>gi|85702996|ref|ZP_01034100.1| deoxyribodipyrimidine photolyase [Roseovarius sp. 217]
gi|85671924|gb|EAQ26781.1| deoxyribodipyrimidine photolyase [Roseovarius sp. 217]
Length = 473
Score = 51.2 bits (121), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 74/301 (24%), Positives = 123/301 (40%), Gaps = 22/301 (7%)
Query: 30 PVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLL 89
P++ W RD R+ D+ AL A++ P+ F D G A + L L
Sbjct: 6 PILVWFRRDLRLADHPALCAAIEGGG----PIIPVFIHDDSVAGLGAAPKWRLGLSLASL 61
Query: 90 QRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTD--FSPLREIRRCKDKICNRVSD 147
R++E+ L L +G A + + V E GA + + P + I R K D
Sbjct: 62 ARDLEDRGSRLI-LRRGSALEVLRALVAETGAGAVHWSRLYDP-QAIERDKAVKSALRED 119
Query: 148 SVTIHEVDAHNVVPVWVASEK----LEYSAKTLRGKINKLLPEYLIDYPMLEQPIEKWTG 203
H + W K + R ++ + L + P + W
Sbjct: 120 GAAAQSHAGHVMFEPWTVETKTGGFYRVYSPMWRAVKDREVAVPLRAPSTILAP-DMWPV 178
Query: 204 TRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNP 263
+ DW + A + +GAEV + + GE AAM+ L DG ++ +Y RN P
Sbjct: 179 SDGLDDWH--MGAAMVRGAEVC-LPYQRVGEAAAMDRLHAFTDGAIS----DYKDARNFP 231
Query: 264 LKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVRRELADNFCFYQP 323
A S LS L +G++S ++C ++A + + +L+EL V RE A + ++ P
Sbjct: 232 AV-EATSSLSENLTYGEVSPRQCWHAGQRALHAGAQGAEHWLKEL-VWREFAYHLMYHTP 289
Query: 324 N 324
+
Sbjct: 290 H 290
>gi|448410083|ref|ZP_21575032.1| photolyase/cryptochrome [Halosimplex carlsbadense 2-9-1]
gi|445672363|gb|ELZ24939.1| photolyase/cryptochrome [Halosimplex carlsbadense 2-9-1]
Length = 461
Score = 51.2 bits (121), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 85/324 (26%), Positives = 140/324 (43%), Gaps = 52/324 (16%)
Query: 32 VYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQR 91
++W RD R+RDN L A A+ VPV V F + +G ARQ F++RG+R L
Sbjct: 3 LFWHQRDLRLRDNRGLATAA--ADGPVVPVFVYDTDFLEHVG--ARQRAFLMRGVRELHE 58
Query: 92 NIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTD--FSPL-REIRRCKDKICNRVSDS 148
E L + G + +P E GA +V + + P RE ++ + +C+R ++
Sbjct: 59 AYRERGGDL-VVRTGRPSEVLPEVAAEFGADTVVYNEHYRPARRERQQLVEAVCDR-TEI 116
Query: 149 VTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQPIEKWTGTRQSI 208
T+ E D V P G+++ P + + +Q + K + +
Sbjct: 117 DTVAETDLVLVDP----------------GRLDDRYPNHSQFHNDWQQ-VPKQSPA-PAP 158
Query: 209 DWDSIIAAVLRKGAEVP----EIGWCESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNN-P 263
D D + A + A VP +I E+G DAA E D FL + + +Y R++ P
Sbjct: 159 DPDEL--ADIDSSATVPVPDADIDLPEAGYDAARE----RYDAFLQEGIYSYNDTRDDLP 212
Query: 264 L---KP-RALSGLSPYLHFGQISAQRCALEARKARKLCPEA----IDTFLEELIVRRELA 315
+ +P +A+S +SPYL G + + +A + + + EL RE
Sbjct: 213 MAVERPTQAVSRMSPYLAAGMVGIRELWRDATEIHDSVSGGEQRNVQKYRYELSW-REQN 271
Query: 316 DNFCFYQP-----NYDSLKGAWEW 334
+ +Y P NY S+ EW
Sbjct: 272 YHLLYYNPDLPTENYKSIPNPIEW 295
>gi|309811658|ref|ZP_07705437.1| putative deoxyribodipyrimidine photo-lyase [Dermacoccus sp.
Ellin185]
gi|308434459|gb|EFP58312.1| putative deoxyribodipyrimidine photo-lyase [Dermacoccus sp.
Ellin185]
Length = 463
Score = 51.2 bits (121), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 37/92 (40%), Positives = 51/92 (55%), Gaps = 10/92 (10%)
Query: 233 GEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARK 292
GEDAA E+L FL + +Y T R+ P KP A S LSP+L FG+IS Q AR+
Sbjct: 227 GEDAAHELLAD----FLDDAVVHYATQRDEPSKP-ATSRLSPHLRFGEISPQTIWHAARR 281
Query: 293 ARKLCPEAIDTFLEELIVRRELADNFCFYQPN 324
+ K ++TFL E + RE A + + P+
Sbjct: 282 SGK----DVETFLSE-VGWREFAWHTLYDNPD 308
>gi|365857119|ref|ZP_09397117.1| putative deoxyribodipyrimidine photo-lyase [Acetobacteraceae
bacterium AT-5844]
gi|363716733|gb|EHM00129.1| putative deoxyribodipyrimidine photo-lyase [Acetobacteraceae
bacterium AT-5844]
Length = 484
Score = 51.2 bits (121), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 51/103 (49%), Gaps = 6/103 (5%)
Query: 225 PEIGWCESGEDAAMEVLKGSKDG---FLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQI 281
PE W G++D FL L YP RN P + + S LSP+LH+G+I
Sbjct: 198 PEPDWAAGFSSLWQPGEAGARDQLQRFLNDALAEYPDGRNRPGEDGS-SRLSPHLHWGEI 256
Query: 282 SAQRCALEARKARKLCPEAIDTFLEELIVRRELADNFCFYQPN 324
SA++ R++ A DTFL+E I+ RE + N ++ P
Sbjct: 257 SARQVWHAVRESEAPA-SAADTFLKE-IIWREFSHNILWHHPG 297
>gi|119497467|ref|XP_001265492.1| deoxyribodipyrimidine photo-lyase Phr1, putative [Neosartorya
fischeri NRRL 181]
gi|119413654|gb|EAW23595.1| deoxyribodipyrimidine photo-lyase Phr1, putative [Neosartorya
fischeri NRRL 181]
Length = 584
Score = 51.2 bits (121), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 78/287 (27%), Positives = 127/287 (44%), Gaps = 32/287 (11%)
Query: 31 VVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGA---KARQLGFMLRGLR 87
VVYW D R+ DN AL A + A ++N+P+ + L Q L A ++ +LR L
Sbjct: 93 VVYWFKSDLRLYDNRALRLAYETAKEHNIPLIALYILSPQDLTAHLLSPARVDLILRTLH 152
Query: 88 LLQRNIEETFQILFFLFQGEAEDNIP----NFVRECGASLLVTDFS-PLREIRRCKD--K 140
L+R++ E I +L E NIP + ++ GA+ L + + E+RR +
Sbjct: 153 QLKRDLSE-LDIPLYLETQEIRKNIPQRIVDLCQQWGANHLYANLEYEVDELRREAKLVR 211
Query: 141 ICNRVSDSV-TIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYP----MLE 195
+C + T H DA V P V S++ + A + + YL + P + E
Sbjct: 212 LCAKNGIKFDTAH--DACVVPPGQVTSQQGKQYA--VYSPWYRTWLAYLNENPDCLELSE 267
Query: 196 QPIEKWTGTRQSID--WDSIIAAVLRKGA----EVPEIGWC-ESGEDAAMEVLKGSKDGF 248
+P R+ +DS + A E +G +GE A+ L + F
Sbjct: 268 EPGSNPGDARKYFKELFDSEVPAAPENKQLSEEEKQHLGQLYPAGEHEALRRL----EAF 323
Query: 249 LTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARK 295
L +++++Y RN + + S LSPY G +SA+ AR+A K
Sbjct: 324 LEEKVRDYAEARNM-VSGQTTSILSPYFASGLLSARTAIEHARRANK 369
>gi|402548804|ref|ZP_10845657.1| deoxyribodipyrimidine photolyase [SAR86 cluster bacterium SAR86C]
Length = 471
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/96 (37%), Positives = 48/96 (50%), Gaps = 10/96 (10%)
Query: 232 SGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEAR 291
+GE AA++ LK FL + NY DRN+P+ S +SPYL G IS++RC LE
Sbjct: 205 TGEQAALDRLKN----FLENKASNYSKDRNDPIID-GTSRMSPYLALGIISSKRCILEGL 259
Query: 292 KARKL----CPEAIDTFLEELIVRRELADNFCFYQP 323
K I +++E IV RE N F P
Sbjct: 260 KLNNFEFNSGNNGIIKWIDE-IVWREFYRNIMFSFP 294
>gi|171913802|ref|ZP_02929272.1| Deoxyribodipyrimidine photo-lyase [Verrucomicrobium spinosum DSM
4136]
Length = 475
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 82/305 (26%), Positives = 117/305 (38%), Gaps = 32/305 (10%)
Query: 32 VYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQR 91
++W RD R+ DN AL HA A+ +P V + + F+ L L +
Sbjct: 9 LHWFRRDLRLTDNTAL-HAAQTASTQVIPFYVLSSWKKAHAWTGPNRQHFLCGNLESLAK 67
Query: 92 NIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSP---LREIRRCKDKICNRVSDS 148
N+E L + GE I +RE GA+ L T+ P + I +CN++
Sbjct: 68 NLEAIGSRLI-IRSGETVSEIERLIRETGATALYTNRDPDPYGQTIETHVIALCNKL--G 124
Query: 149 VTIHEV-DAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPML--EQPIEK--WTG 203
V H DA V + E T G ++ Y ++ L QP+ K G
Sbjct: 125 VAFHTCKDA-------VLHQPQE--VLTGNGGPYRVFTPYSKNWLSLPKAQPLSKVRTLG 175
Query: 204 TRQSIDWDSI-IAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNN 262
S S+ + V+ P GE AA + +K D RL Y RN
Sbjct: 176 DAPSPKIKSLPLPTVVHWHLPEPTATLPTPGEKAARDRMKTFVDSV---RLPRYEETRNF 232
Query: 263 PLKPRALSGLSPYLHFGQISA----QRC--ALEARKARKLCPEAIDTFLEELIVRRELAD 316
P P S LSP L +G IS RC AL + I+T+++EL R
Sbjct: 233 PSVP-GTSQLSPDLRYGLISIRELYHRCQQALAQAGGQPAAQSGINTYIKELAWREFYMA 291
Query: 317 NFCFY 321
FY
Sbjct: 292 VLHFY 296
>gi|242208527|ref|XP_002470114.1| hypothetical DNA photolyase [Postia placenta Mad-698-R]
gi|220730866|gb|EED84717.1| hypothetical DNA photolyase [Postia placenta Mad-698-R]
Length = 543
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 47/90 (52%), Gaps = 5/90 (5%)
Query: 31 VVYWM-FRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGA---KARQLGFMLRGL 86
+VYWM D R RDN AL A +QA +++VP+ F L A AR++ F LR L
Sbjct: 17 IVYWMRIEDLRTRDNRALAQASEQAREDHVPLIALFVLSPHDYIAHDRSARRIDFTLRNL 76
Query: 87 RLLQRNIEETFQILFFLFQGEAEDNIPNFV 116
R ++ ++ E + + NIP++V
Sbjct: 77 RCIRSSLAE-LHVPLYTTTHTPRTNIPSYV 105
>gi|418296029|ref|ZP_12907873.1| deoxyribodipyrimidine photo-lyase [Agrobacterium tumefaciens
CCNWGS0286]
gi|355539461|gb|EHH08699.1| deoxyribodipyrimidine photo-lyase [Agrobacterium tumefaciens
CCNWGS0286]
Length = 479
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 81/325 (24%), Positives = 121/325 (37%), Gaps = 64/325 (19%)
Query: 30 PVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLL 89
P + W +D R+ DN AL+ AV+ +PV V GA Q ++ L L
Sbjct: 7 PAIVWFRKDLRLSDNLALLAAVEHGGP-VIPVYVREKSCGPLGGA---QEWWLHHSLACL 62
Query: 90 QRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLV----TDFSPLREIRRCKDKICNRV 145
+E+T L L G+A + + + E GA + D + + + K K+ +
Sbjct: 63 SAALEKTGSRL-VLASGDAGETLRQLISETGADAVFWNRRYDPAGMATDKALKQKLRD-- 119
Query: 146 SDSVTIHEVDAHNV-----------------VPVWVASEKLEY------SAKTLRGKINK 182
D +T+ H + P W A E E + K+L+
Sbjct: 120 -DGLTVRSFSGHLLHEPSRLQTKSGGPYRVYTPFWRALEGGEEPHAPADAPKSLKAPKAW 178
Query: 183 LLPEYLIDYPMLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLK 242
L E L D+ +L DW + + W GE A E L
Sbjct: 179 LESEKLSDWKLLP----------TKPDWAKHFSDI-----------WA-PGEGGAQEKL- 215
Query: 243 GSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARK-ARKLCPEAI 301
D F+ LK Y R+ P K A S LSP+L G+IS + +R + I
Sbjct: 216 ---DDFIDGALKGYEEGRDFPAK-DATSMLSPHLALGEISPATVWHATKGLSRHIASNDI 271
Query: 302 DTFLEELIVRRELADNFCFYQPNYD 326
F +E IV RE + F+ P D
Sbjct: 272 SRFRKE-IVWREFCYHLLFHFPGLD 295
>gi|407781615|ref|ZP_11128833.1| deoxyribodipyrimidine photolyase family protein [Oceanibaculum
indicum P24]
gi|407207832|gb|EKE77763.1| deoxyribodipyrimidine photolyase family protein [Oceanibaculum
indicum P24]
Length = 497
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 82/314 (26%), Positives = 131/314 (41%), Gaps = 46/314 (14%)
Query: 30 PVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKA---RQLGFMLRGL 86
P++ W +D R+ DN AL AV+ P+ + L D+ GA A ++ L
Sbjct: 21 PLLLWFRQDLRLADNPALRAAVESGQ----PILPVYILDDETPGAWAIGGAARWWLHHSL 76
Query: 87 RLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTD--FSPLREIRR-------C 137
L +++ L L +G++ + I + VRE GA+ + + + P R
Sbjct: 77 TALSHDLKALGAPLI-LRRGDSREVIDSLVREAGATAVYWNRCYEPFARKRDEAIKATLK 135
Query: 138 KDKICNRVSDSVTIHE---VDAHNVVPVWVASEKLEYSAKTLRGKINKLLP--EYLIDYP 192
+D I R +S +HE V+ + P V S + A +GK +K LP E L+
Sbjct: 136 QDGIEARSFNSALLHEPWTVENKSGEPFRVYSAF--WRACLAKGKPDKPLPAPETLVAAS 193
Query: 193 M-LEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTK 251
I W +W A+ E W GE+ A E L G FL +
Sbjct: 194 APASDSIGDWKLLPTKPNW-----------AKRFESAWT-PGENGAQERLTG----FLDE 237
Query: 252 RLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQR---CALEARKARKLCPEAIDTFLEEL 308
+ Y +R+ P A S LSP+LHFG+I ++ A A L + + FL E
Sbjct: 238 AVNRYKAERDRP-DIEATSRLSPHLHFGEIGPRQIWHATRAAMAAHDLNEASAEKFLSE- 295
Query: 309 IVRRELADNFCFYQ 322
+ RE + + ++
Sbjct: 296 VGWREFSHHLLYHN 309
>gi|449549826|gb|EMD40791.1| hypothetical protein CERSUDRAFT_149213 [Ceriporiopsis subvermispora
B]
Length = 568
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/139 (30%), Positives = 66/139 (47%), Gaps = 19/139 (13%)
Query: 31 VVYWM-FRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAK---ARQLGFMLRGL 86
V+YWM +D R+ DN AL A Q+ +NNVP+ F L Q A AR++ FMLR L
Sbjct: 45 VIYWMRMQDLRITDNRALAQASAQSQENNVPLLALFVLSPQDYIAHDRGARRIDFMLRNL 104
Query: 87 RLLQRNIEETFQILFFLFQGEAEDNIPNFV----RECGASLLVTDFSP-----LREIRRC 137
R L+ ++ + I ++ +P F+ ++ AS L + R+IR C
Sbjct: 105 RELKASLADV-NIPLYVTSHAPRRTLPEFILSLLKKWNASHLFANIEHEVDELRRDIRVC 163
Query: 138 K-----DKICNRVSDSVTI 151
+ + C V+D I
Sbjct: 164 QLAKESNIACAFVNDKCVI 182
>gi|254438207|ref|ZP_05051701.1| deoxyribodipyrimidine photolyase family [Octadecabacter antarcticus
307]
gi|198253653|gb|EDY77967.1| deoxyribodipyrimidine photolyase family [Octadecabacter antarcticus
307]
Length = 533
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 76/304 (25%), Positives = 126/304 (41%), Gaps = 28/304 (9%)
Query: 30 PVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLL 89
PV+YW+ RD R+ DN A + A + +PV + + + A +LG G+R+
Sbjct: 67 PVIYWVRRDFRIGDN-AALSAACATGRPVIPVFICDEVVESHGAAPKFRLG---EGVRVF 122
Query: 90 QRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTD--FSPLREIRRCKDKICNRVSD 147
+ L L +G+A + V + GA+ + + + P + R K + +D
Sbjct: 123 GAALAVVGSRL-VLRRGDALAVLREVVAQTGATGVYWNRLYDPASKARDTGVKAALK-AD 180
Query: 148 SVTIHEVDAHNVVPVWVASEKLE--YSA-----KTLRGKINKLLPEYLIDYPMLEQPIEK 200
V + H + W K Y KT+RG+ + P I P +
Sbjct: 181 GVEVASFTGHLLFEPWTVETKTGGFYRVFTPLWKTVRGR-DVATP---IPAPASVPAPDV 236
Query: 201 WTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLKNYPTDR 260
W + + DW + A + +G +V C GE AA L + F+ R+++Y T+R
Sbjct: 237 WPTSDRLDDW--ALGAAMVRGRDVLAAHIC-VGEAAARTRL----ETFIEGRVQSYQTNR 289
Query: 261 NNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVRRELADNFCF 320
+ P S LS L +G+IS C A + F +EL V RE A +
Sbjct: 290 DLP-GVDGTSRLSENLTYGEISPAVCWHAGWAAIHSGKGQAEIFCKEL-VWREFAYHLVH 347
Query: 321 YQPN 324
+ P+
Sbjct: 348 HTPH 351
>gi|294055436|ref|YP_003549094.1| deoxyribodipyrimidine photo-lyase [Coraliomargarita akajimensis DSM
45221]
gi|293614769|gb|ADE54924.1| Deoxyribodipyrimidine photo-lyase [Coraliomargarita akajimensis DSM
45221]
Length = 476
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/107 (35%), Positives = 51/107 (47%), Gaps = 11/107 (10%)
Query: 231 ESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEA 290
ES + + E K D FL+ R++ Y TDR+ P S LSPYLHFGQI ++ E
Sbjct: 201 ESKWEPSEEGAKQQVDEFLSLRVERYDTDRDRP-DLDGTSALSPYLHFGQIGPRQLVHEL 259
Query: 291 RKARKLCPEAIDTFLEELIVRRELADNFCFY---------QPNYDSL 328
L + FL+E I RE A N ++ QP Y+S
Sbjct: 260 ELRADLEEQGPFIFLKE-IYWREFAYNVLYHFPRTAESPLQPQYESF 305
>gi|334143281|ref|YP_004536437.1| deoxyribodipyrimidine photo-lyase [Thioalkalimicrobium cyclicum
ALM1]
gi|333964192|gb|AEG30958.1| Deoxyribodipyrimidine photo-lyase [Thioalkalimicrobium cyclicum
ALM1]
Length = 478
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/115 (33%), Positives = 56/115 (48%), Gaps = 9/115 (7%)
Query: 212 SIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSG 271
S + A+ P I + GE AA+ FLT +++YP R+ P S
Sbjct: 182 SRLKAIANTDWAKPLISQWKVGEQAAI----NQATHFLTTHIQHYPERRDFPAI-NGTSQ 236
Query: 272 LSPYLHFGQISAQRCALEARKARKLCP---EAIDTFLEELIVRRELADNFCFYQP 323
LS +LHFG+IS+ R R+A+ P EAI +F+ +LI RE + F+ P
Sbjct: 237 LSIHLHFGEISSTRLLESCRQAQANQPGHSEAIQSFIRQLIW-REFSRYLLFFNP 290
>gi|389878514|ref|YP_006372079.1| Deoxyribodipyrimidine photolyase [Tistrella mobilis KA081020-065]
gi|388529298|gb|AFK54495.1| Deoxyribodipyrimidine photolyase [Tistrella mobilis KA081020-065]
Length = 489
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 79/320 (24%), Positives = 119/320 (37%), Gaps = 45/320 (14%)
Query: 30 PVVYWMFRDQRVRDNWAL--------------IHAVDQANKNNVPVAVAFNLFDQFLGAK 75
P++ W +D R+ DN AL +H D ++VP + LG
Sbjct: 5 PLIVWFRQDLRIADNPALHRASRSGSRLVCVYVHEDDDPAHDDVPAP-------RPLGGA 57
Query: 76 ARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTD--FSPLRE 133
AR ++ R L L ++ L L +G A IP R GA ++ + + P
Sbjct: 58 ARW--WLHRSLLALDADLRAIGGRLLLL-KGPAAREIPALARRIGAGAVLINRVYDPEGA 114
Query: 134 IRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPM 193
R D+ + IH + HN + + E KT G P +
Sbjct: 115 AR---DRAIGERLKADGIH-MAGHNAL---LLHEPWTIETKT-GGPYQVFTPFWRAARDK 166
Query: 194 LEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKD---GFLT 250
E P R + D+ L +P I W + G++D GFL
Sbjct: 167 GEIPPPLAAPDRLDLVEDAPEGVPLAALDLLPRIDWAGGIAASWTPGSAGARDRLAGFLN 226
Query: 251 KRLKNYPTDRNNPLKPRALSGLSPYLHFGQIS------AQRCALEARKARKLCPEAIDTF 304
+ L Y DR+ P S LSP+L FG+I A A+EA+ + DTF
Sbjct: 227 RALTGYKPDRDRPAG-ETTSRLSPHLRFGEIGPRTVWHAVHHAIEAQGLTGPARASADTF 285
Query: 305 LEELIVRRELADNFCFYQPN 324
L EL RE + + + P+
Sbjct: 286 LTELGW-REFSYHLLHHFPH 304
>gi|350631876|gb|EHA20245.1| hypothetical protein ASPNIDRAFT_45910 [Aspergillus niger ATCC 1015]
Length = 585
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 76/285 (26%), Positives = 124/285 (43%), Gaps = 28/285 (9%)
Query: 31 VVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGA---KARQLGFMLRGLR 87
VV+W D R+ DN L A A ++ +P+ + L + L A A ++ MLR L
Sbjct: 94 VVHWFKTDLRLHDNRGLQMAYQVAREHKLPLIGLYILSPEDLTAHLSSAPRVDLMLRTLE 153
Query: 88 LLQRNIEETFQILFFLFQGEAEDNIP----NFVRECGASLLVTDFS-PLREIRRCKD--K 140
LL+R++ E I ++ E ++IP + +E GA+ L + + E+RR +
Sbjct: 154 LLRRDLSE-LDIPLYMETQEKRNDIPQRIIDLCQEWGATHLFANLEYEVDELRREAKLVR 212
Query: 141 ICNRVSDSVTIHEVDAHNVVPV----WVASEKLEYSAKT--LRGKINKL--LPEYL--ID 190
+C R I AH+ V V+ + +Y+ + R L PEYL D
Sbjct: 213 LCARNG----IRFEAAHDTCVVTPGKLVSQQGKQYAVYSPWFRAWCAFLNENPEYLEVAD 268
Query: 191 YPMLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLT 250
P P E + + +A ++ +E + + E + E L+ + FL
Sbjct: 269 EPG-SNPGEARKHFKTLFGCEVPVAPENKRLSEEEKTRFRELYPEGEHEALR-RLEAFLE 326
Query: 251 KRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARK 295
++ +Y D N L R S LSPY G +SA+ +ARK K
Sbjct: 327 EKANDY-DDLRNTLAGRNTSVLSPYFASGSLSARTAVFQARKKNK 370
>gi|417097726|ref|ZP_11959367.1| deoxyribodipyrimidine photo-lyase protein [Rhizobium etli CNPAF512]
gi|327193153|gb|EGE60063.1| deoxyribodipyrimidine photo-lyase protein [Rhizobium etli CNPAF512]
Length = 482
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/149 (30%), Positives = 62/149 (41%), Gaps = 23/149 (15%)
Query: 198 IEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLKNYP 257
+E W DW S A + C GE+ A E L+ F+ RL Y
Sbjct: 187 LESWKLLSTQPDWASNFADL------------CTPGEEGAQEKLRT----FIEDRLDGYK 230
Query: 258 TDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVRRELADN 317
+R+ P KP A S LSP+L G+IS R R K P A + I RE + +
Sbjct: 231 ENRDYPAKP-ATSMLSPHLALGEISPARIWDATRGLSKHVPAADIVHFRKEIAWREFSYH 289
Query: 318 FCFYQP-----NYDSLKGAWEWARKSLKD 341
+ P N+D +EW R++ KD
Sbjct: 290 LLAHFPRLATANWDDRFDGFEW-RRAEKD 317
>gi|153209159|ref|ZP_01947255.1| deoxyribodipyrimidine photolyase [Coxiella burnetii 'MSU Goat
Q177']
gi|212218603|ref|YP_002305390.1| deoxyribodipyrimidine photolyase [Coxiella burnetii CbuK_Q154]
gi|120575482|gb|EAX32106.1| deoxyribodipyrimidine photolyase [Coxiella burnetii 'MSU Goat
Q177']
gi|212012865|gb|ACJ20245.1| deoxyribodipyrimidine photolyase [Coxiella burnetii CbuK_Q154]
Length = 472
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/92 (39%), Positives = 47/92 (51%), Gaps = 13/92 (14%)
Query: 233 GEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARK 292
GE A VLK F+ + LKNYP R+ P + S LSPYLHFG+IS ++ +
Sbjct: 198 GEKNAQIVLKK----FIKENLKNYPAHRDRP-DISSTSHLSPYLHFGEISIRQVWTAITQ 252
Query: 293 AR---KLCPEAIDTFLEELIVRRELADNFCFY 321
A K +A D FL +LI R F +Y
Sbjct: 253 ATIQDKNLQKAADVFLRQLIWRE-----FAYY 279
>gi|209364020|ref|YP_002268317.1| deoxyribodipyrimidine photolyase [Coxiella burnetii Dugway
5J108-111]
gi|207081953|gb|ACI23155.1| deoxyribodipyrimidine photolyase [Coxiella burnetii Dugway
5J108-111]
Length = 452
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/92 (39%), Positives = 47/92 (51%), Gaps = 13/92 (14%)
Query: 233 GEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARK 292
GE A VLK F+ + LKNYP R+ P + S LSPYLHFG+IS ++ +
Sbjct: 198 GEKNAQIVLKK----FIKENLKNYPAHRDRP-DISSTSHLSPYLHFGEISIRQVWTAITQ 252
Query: 293 AR---KLCPEAIDTFLEELIVRRELADNFCFY 321
A K +A D FL +LI R F +Y
Sbjct: 253 ATIQDKNLQKAADVFLRQLIWRE-----FAYY 279
>gi|420239237|ref|ZP_14743574.1| deoxyribodipyrimidine photolyase [Rhizobium sp. CF080]
gi|398081725|gb|EJL72497.1| deoxyribodipyrimidine photolyase [Rhizobium sp. CF080]
Length = 477
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 78/312 (25%), Positives = 122/312 (39%), Gaps = 46/312 (14%)
Query: 26 KKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRG 85
+K P + W +D R+ DN AL HA +A +PV + A Q ++
Sbjct: 4 EKPAPAILWFRKDLRLDDNPAL-HAAIEAGGPVIPVYIREPAHLNIGPLGAAQAWWLHHS 62
Query: 86 LRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLRE-------IRRCK 138
L L+ +++ L F+ G+AED + + VR+ A + + + R I K
Sbjct: 63 LAALKASLKSLSGDLIFI-SGKAEDVLTDLVRKTNAKTVFVNRAYERTLFDRGIAIELKK 121
Query: 139 DKICNRVSDSVTIHE-----VDAHNV----VPVWVASEKLEYSAKTLRGKINKLLPEYLI 189
I R +HE A N P W A +K+ + PE+
Sbjct: 122 HDIAIRAFHGQLLHEPKSIRTGAGNAFKVFTPFWNALQKVGEPQEPTDAPTKIPSPEH-- 179
Query: 190 DYPMLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFL 249
+P+ E ++ W + DW + + W GE A E L D
Sbjct: 180 -FPLSEN-LDHWALLPKKPDWAADFGRM-----------WT-PGEAGAQEKLADVVD--- 222
Query: 250 TKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELI 309
+ L++Y R+ P A S LSP+L G++S R R L P+A +
Sbjct: 223 -RDLQDYKRGRDLP-SVHATSLLSPHLAHGEVSPARI---WHAVRGLPPKASEDVAH--- 274
Query: 310 VRRELA-DNFCF 320
RRELA +FC+
Sbjct: 275 FRRELAWRDFCY 286
>gi|419859751|ref|ZP_14382401.1| putative riboflavin biosynthesis
diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Corynebacterium diphtheriae bv. intermedius str. NCTC
5011]
gi|387983794|gb|EIK57249.1| putative riboflavin biosynthesis
diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Corynebacterium diphtheriae bv. intermedius str. NCTC
5011]
Length = 446
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 74/279 (26%), Positives = 106/279 (37%), Gaps = 56/279 (20%)
Query: 30 PVVYWMFRDQRVRDNWALIHAVDQANKNNV---PVAVAFNLFDQFLGAKAR---QLGFML 83
PVV W D RV DN AL+ A + N V +A + + LG + +
Sbjct: 4 PVVVWFRDDLRVHDNPALMKAWELVRANPADLHAVYIANEVGVRPLGGAVKWWLHHSLLA 63
Query: 84 RGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICN 143
+L QR + + G+ +P V CGA+ + + R D
Sbjct: 64 LSEQLAQRGVR------LHVLSGDPLTLLPQLVTSCGATAVT--------MNRRYDPAAR 109
Query: 144 RVSDSVTIHEVDAHNV----VPVWVASEKLEYSAKT-------------LRGKINKLLPE 186
+ D+ + + AH+V P + +E E + T LR I L +
Sbjct: 110 SIDDAF-VADASAHDVEVYDFPCHLLAEPGEITTTTGGSYKVFTPFSRNLRDAIGDLPLD 168
Query: 187 YLIDYPMLEQPIEKWTGTRQSI---DWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKG 243
L P EQPI+ T T+ +I WD+ AA + K GE AA E L
Sbjct: 169 TLAAPPKAEQPIDD-TETQAAIADLGWDAWWAASISKA--------WTPGEPAAREALAE 219
Query: 244 SKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQIS 282
L L Y DR+ P S LSP L FG++S
Sbjct: 220 -----LDDILPRYLDDRDRP-DIDGTSRLSPRLRFGELS 252
>gi|29654479|ref|NP_820171.1| deoxyribodipyrimidine photolyase [Coxiella burnetii RSA 493]
gi|212212435|ref|YP_002303371.1| deoxyribodipyrimidine photolyase [Coxiella burnetii CbuG_Q212]
gi|29541746|gb|AAO90685.1| deoxyribodipyrimidine photolyase [Coxiella burnetii RSA 493]
gi|212010845|gb|ACJ18226.1| deoxyribodipyrimidine photolyase [Coxiella burnetii CbuG_Q212]
Length = 472
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/92 (39%), Positives = 47/92 (51%), Gaps = 13/92 (14%)
Query: 233 GEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARK 292
GE A VLK F+ + LKNYP R+ P + S LSPYLHFG+IS ++ +
Sbjct: 198 GEKNAQIVLKK----FIKENLKNYPAHRDRP-DISSTSHLSPYLHFGEISIRQVWTAITQ 252
Query: 293 AR---KLCPEAIDTFLEELIVRRELADNFCFY 321
A K +A D FL +LI R F +Y
Sbjct: 253 ATIQDKNLQKAADVFLRQLIWRE-----FAYY 279
>gi|395490722|ref|ZP_10422301.1| DNA photolyase FAD-binding protein [Sphingomonas sp. PAMC 26617]
Length = 488
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 90/383 (23%), Positives = 142/383 (37%), Gaps = 64/383 (16%)
Query: 12 QPGRIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQF 71
Q R+R L + V+ W+ + R DN + A+ N +PV V + + +
Sbjct: 15 QAPRVRALNDKVPAQNGRYVLCWLQQALRASDNPVIDAAIRLGNALRLPVLVYHGVREDY 74
Query: 72 LGAKARQLGFML------------RGLRLLQR--NIEETFQILFFLFQGEAEDNIPNFVR 117
A R F+L RGL +Q + L + GEA
Sbjct: 75 PYASDRLHHFILGASIDLAEGCRQRGLACVQHVDRAGRREKGLVYRLGGEA--------- 125
Query: 118 ECGASLLVTDFSPLREIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLR 177
A++L+ D P R +++ RV V + V+A +VP V + ++ LR
Sbjct: 126 ---AAILLED-QPTFVARWQSERVAARVD--VPVFAVNAACLVPPAVIGDDVQGRTAFLR 179
Query: 178 -------------GKINKLLPEYLIDYPMLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEV 224
+I + P Y P T R D + A L +
Sbjct: 180 RHEPARAVWAAWDEEIATIAP-YAGALPF--------TPDRLCADELGTLIAGLDIDHSL 230
Query: 225 PEIGWCESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQ 284
P + +G AA + L + L Y + RN+ + SGLSPYLHFG +
Sbjct: 231 PVVPMHPAGRRAAEDRLAR----LVADVLPGYASTRNDATRADGASGLSPYLHFG-VLGP 285
Query: 285 RCALEARKARKLCPEAIDTFLEELIVRRELADNFCFYQPNYDSLKGAWE----WARKSLK 340
R + A + F +E++ RE + YQ + + ++ WAR++L
Sbjct: 286 REVMAAVNGSAAGGQHKRKFADEVLGWRE----WFHYQARHLAAPERYDRIAPWARQTLT 341
Query: 341 DHASDKREHIYTKEQFEKAQTAD 363
DHA D R T K +T D
Sbjct: 342 DHAGDLRPDQETLSALLKGETRD 364
>gi|376247446|ref|YP_005139390.1| putative riboflavin biosynthesis
diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Corynebacterium diphtheriae HC04]
gi|372114014|gb|AEX80072.1| putative riboflavin biosynthesis protein [Corynebacterium
diphtheriae HC04]
Length = 446
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 74/279 (26%), Positives = 106/279 (37%), Gaps = 56/279 (20%)
Query: 30 PVVYWMFRDQRVRDNWALIHAVDQANKNNV---PVAVAFNLFDQFLGAKAR---QLGFML 83
PVV W D RV DN AL+ A + N V +A + + LG + +
Sbjct: 4 PVVVWFRDDLRVHDNPALMKAWELVRANPADLHAVYIANEVGVRPLGGAVKWWLHHSLLA 63
Query: 84 RGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICN 143
+L QR + + G+ +P V CGA+ + + R D
Sbjct: 64 LSEQLAQRGVR------LHVLSGDPLTLLPQLVTSCGATAVT--------MNRRYDPAAR 109
Query: 144 RVSDSVTIHEVDAHNV----VPVWVASEKLEYSAKT-------------LRGKINKLLPE 186
+ D+ + + AH+V P + +E E + T LR I L +
Sbjct: 110 SIDDAF-VADASAHDVEVYDFPCHLLAEPGEITTTTGGSYKVFTPFSRNLRDAIGDLPLD 168
Query: 187 YLIDYPMLEQPIEKWTGTRQSI---DWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKG 243
L P EQPI+ T T+ +I WD+ AA + K GE AA E L
Sbjct: 169 TLAAPPKAEQPIDD-TETQAAIADLGWDAWWAASISKA--------WTPGEPAAREALAE 219
Query: 244 SKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQIS 282
L L Y DR+ P S LSP L FG++S
Sbjct: 220 -----LDDILPRYLDDRDRP-DIDGTSRLSPRLRFGELS 252
>gi|376256094|ref|YP_005143985.1| putative riboflavin biosynthesis
diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Corynebacterium diphtheriae VA01]
gi|372118611|gb|AEX82345.1| putative riboflavin biosynthesis protein [Corynebacterium
diphtheriae VA01]
Length = 446
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 74/279 (26%), Positives = 106/279 (37%), Gaps = 56/279 (20%)
Query: 30 PVVYWMFRDQRVRDNWALIHAVDQANKNNV---PVAVAFNLFDQFLGAKAR---QLGFML 83
PVV W D RV DN AL+ A + N V +A + + LG + +
Sbjct: 4 PVVVWFRDDLRVHDNPALMKAWELVRANPADLHAVYIANEVGVRPLGGAVKWWLHHSLLA 63
Query: 84 RGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICN 143
+L QR + + G+ +P V CGA+ + + R D
Sbjct: 64 LSEQLAQRGVR------LHVLSGDPLTLLPQLVTSCGAAAVT--------MNRRYDPAAR 109
Query: 144 RVSDSVTIHEVDAHNV----VPVWVASEKLEYSAKT-------------LRGKINKLLPE 186
+ D+ + + AH+V P + +E E + T LR I L +
Sbjct: 110 SIDDAF-VADASAHDVEVYDFPCHLLAEPGEITTTTGGSYKVFTPFSRNLRDAIGDLPLD 168
Query: 187 YLIDYPMLEQPIEKWTGTRQSI---DWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKG 243
L P EQPI+ T T+ +I WD+ AA + K GE AA E L
Sbjct: 169 TLAAPPKAEQPIDD-TETQAAIADLGWDAWWAASISKA--------WTPGEPAAREALAE 219
Query: 244 SKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQIS 282
L L Y DR+ P S LSP L FG++S
Sbjct: 220 -----LDDILPRYLDDRDRP-DIDGTSRLSPRLRFGELS 252
>gi|376286643|ref|YP_005159209.1| putative riboflavin biosynthesis
diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Corynebacterium diphtheriae BH8]
gi|371583977|gb|AEX47642.1| putative riboflavin biosynthesis protein [Corynebacterium
diphtheriae BH8]
Length = 446
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 74/279 (26%), Positives = 106/279 (37%), Gaps = 56/279 (20%)
Query: 30 PVVYWMFRDQRVRDNWALIHAVDQANKNNV---PVAVAFNLFDQFLGAKAR---QLGFML 83
PVV W D RV DN AL+ A + N V +A + + LG + +
Sbjct: 4 PVVVWFRDDLRVHDNPALMKAWELVRANPADLHAVYIANEVGVRPLGGAVKWWLHHSLLA 63
Query: 84 RGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICN 143
+L QR + + G+ +P V CGA+ + + R D
Sbjct: 64 LSEQLAQRGVR------LHVLSGDPLTLLPQLVTSCGATAVT--------MNRRYDPAAR 109
Query: 144 RVSDSVTIHEVDAHNV----VPVWVASEKLEYSAKT-------------LRGKINKLLPE 186
+ D+ + + AH+V P + +E E + T LR I L +
Sbjct: 110 SIDDAF-VADASAHDVEVYDFPCHLLAEPGEITTTTGGSYKVFTPFSRNLRDAIGDLPLD 168
Query: 187 YLIDYPMLEQPIEKWTGTRQSI---DWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKG 243
L P EQPI+ T T+ +I WD+ AA + K GE AA E L
Sbjct: 169 TLAAPPKAEQPIDD-TETQAAIADLGWDAWWAASISKA--------WTPGEPAAREALAE 219
Query: 244 SKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQIS 282
L L Y DR+ P S LSP L FG++S
Sbjct: 220 -----LDDILPRYLDDRDRP-DIDGTSRLSPRLRFGELS 252
>gi|440226410|ref|YP_007333501.1| deoxyribodipyrimidine photo-lyase [Rhizobium tropici CIAT 899]
gi|440037921|gb|AGB70955.1| deoxyribodipyrimidine photo-lyase [Rhizobium tropici CIAT 899]
Length = 485
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 78/316 (24%), Positives = 131/316 (41%), Gaps = 47/316 (14%)
Query: 26 KKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAV---AFNLFDQFLGAKARQLGFM 82
K+ P++ W +D R+ DN AL A +++ +PV + GA+ L +
Sbjct: 6 KEPNPILLWFRKDLRLDDNHALQSAA-TSSRPLIPVYIREPGVTERGPLGGAQEWWLHYS 64
Query: 83 LRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKIC 142
L L++ + L GEA + V+E GA +V + R ++
Sbjct: 65 LAALQIALDAVGSKL----ILRHGEALTVLEKLVKETGAEAVVWN----RRYDPAGVEVD 116
Query: 143 NRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQ------ 196
++ ++ ++A++ + +L + LR Y + EQ
Sbjct: 117 TQIKKALRSKGIEANSF------AGQLLHEPTRLRTGTGNHYKTYTPFWRAFEQSGEPPF 170
Query: 197 PIE---------KWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDG 247
PIE +W + S+D S++ A +E +I W GE AA++ LK DG
Sbjct: 171 PIEAPRRLLAPGRWPQS-DSLDAWSLLPAKPNWASEFADI-WT-PGEAAALDKLKDFVDG 227
Query: 248 FLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARK-ARKLCPEAIDTFLE 306
L +Y R+ P KP A S LSP+L G+IS R R K+ + + F +
Sbjct: 228 ----ALNDYAIGRDFPDKP-ATSLLSPHLALGEISPARMWHATRGLPDKVGTDNVVRFRK 282
Query: 307 ELIVRRELADNFCFYQ 322
E+I R FC++Q
Sbjct: 283 EIIWR-----EFCYHQ 293
>gi|84517100|ref|ZP_01004456.1| deoxyribodipyrimidine photolyase [Loktanella vestfoldensis SKA53]
gi|84508995|gb|EAQ05456.1| deoxyribodipyrimidine photolyase [Loktanella vestfoldensis SKA53]
Length = 471
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 77/317 (24%), Positives = 123/317 (38%), Gaps = 34/317 (10%)
Query: 30 PVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFL---GAKARQLGFMLR-- 84
P++ W+ RD R+ D+ AL A + PV + DQ GA+ +L L
Sbjct: 5 PIIVWVRRDLRLADHPALTAACESGQ----PVIAVYIHDDQVASLGGAQKLRLDLALAQF 60
Query: 85 GLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTD--FSPLREIRRCKDKIC 142
G L R L +G A + + +RE GA + + R K
Sbjct: 61 GKTLADRGSR------LILRKGPALGVLRDLIRETGAGAVYWSRLYHATANDRDAAVKSA 114
Query: 143 NRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKL----LPEYLIDYPMLEQPI 198
+ +D + H + W + K K N + + E L + P
Sbjct: 115 LK-ADGIVARSFTGHLLFEPWTVATKTGGFYKVYTPMWNAVRGNEVAEPLPCPAKITAP- 172
Query: 199 EKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLKNYPT 258
W + DW + +++G ++ C GEDAA + L F+ R+ NY
Sbjct: 173 AVWPASDALADWQ--LRRAMQRGGDILARH-CTVGEDAARDRLGA----FIADRVANYVK 225
Query: 259 DRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVRRELADNF 318
R+ P + S LS L FG+IS + C ++A + + FL+EL V RE A +
Sbjct: 226 GRDLPAI-KGTSNLSENLTFGEISPRMCWHAGQRALRDGKADAEVFLKEL-VWREFAYHL 283
Query: 319 CFYQPNY--DSLKGAWE 333
+ P D+ K W+
Sbjct: 284 AHHTPRILTDNWKEDWD 300
>gi|376253206|ref|YP_005141665.1| putative riboflavin biosynthesis
diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Corynebacterium diphtheriae PW8]
gi|372116290|gb|AEX68760.1| putative riboflavin biosynthesis protein [Corynebacterium
diphtheriae PW8]
Length = 446
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 74/279 (26%), Positives = 106/279 (37%), Gaps = 56/279 (20%)
Query: 30 PVVYWMFRDQRVRDNWALIHAVDQANKNNV---PVAVAFNLFDQFLGAKAR---QLGFML 83
PVV W D RV DN AL+ A + N V +A + + LG + +
Sbjct: 4 PVVVWFRDDLRVHDNPALMKAWELVRANPADLHAVYIANEVGVRPLGGAVKWWLHHSLLA 63
Query: 84 RGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICN 143
+L QR + + G+ +P V CGA+ + + R D
Sbjct: 64 LSEQLAQRGVR------LHVLSGDPLTLLPQLVTSCGATAVT--------MNRRYDPAAR 109
Query: 144 RVSDSVTIHEVDAHNV----VPVWVASEKLEYSAKT-------------LRGKINKLLPE 186
+ D+ + + AH+V P + +E E + T LR I L +
Sbjct: 110 SIDDAF-VADASAHDVEVYDFPCHLLAEPGEITTTTGGSYKVFTPFSRNLRDAIGDLPLD 168
Query: 187 YLIDYPMLEQPIEKWTGTRQSI---DWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKG 243
L P EQPI+ T T+ +I WD+ AA + K GE AA E L
Sbjct: 169 TLAAPPKAEQPIDD-TETQAAIADLGWDAWWAASISKA--------WTPGEPAAREALAE 219
Query: 244 SKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQIS 282
L L Y DR+ P S LSP L FG++S
Sbjct: 220 -----LDDILPRYLDDRDRP-DIDGTSRLSPRLRFGELS 252
>gi|376250251|ref|YP_005137132.1| putative riboflavin biosynthesis
diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Corynebacterium diphtheriae HC03]
gi|372111755|gb|AEX77814.1| putative riboflavin biosynthesis protein [Corynebacterium
diphtheriae HC03]
Length = 446
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 75/279 (26%), Positives = 107/279 (38%), Gaps = 56/279 (20%)
Query: 30 PVVYWMFRDQRVRDNWALIHAVDQANKNNV---PVAVAFNLFDQFLGAKAR---QLGFML 83
PVV W D RV DN AL+ A + N V +A + + LG + +
Sbjct: 4 PVVVWFRDDLRVHDNPALMKAWELVRANPADLHAVYIANEVGVRPLGGAVKWWLHHSLLA 63
Query: 84 RGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICN 143
+L QR + + G+ +P V CGA+ + + R D
Sbjct: 64 LSEQLAQRGVR------LHVLSGDPLTLLPQLVTSCGAAAVT--------MNRRYDPAAR 109
Query: 144 RVSDSVTIHEVDAHNV----VPVWVASEKLEYSAKT-------------LRGKINKLLPE 186
+ D+ + + AH+V P + +E E + T LR I L +
Sbjct: 110 SIDDAF-VADASAHDVEVYDFPCHLLAEPGEITTTTGGSYKVFTPFSRNLRDAIGDLPLD 168
Query: 187 YLIDYPMLEQPIEKWTGTRQSI---DWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKG 243
L P EQPI+ T T+ +I WD+ AA + K W GE AA E L
Sbjct: 169 TLAAPPKAEQPIDD-TETQAAIADLGWDAWWAASISK-------AWT-PGEPAAREALAE 219
Query: 244 SKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQIS 282
L L Y DR+ P S LSP L FG++S
Sbjct: 220 -----LDDILPRYLDDRDRP-DIDGTSRLSPRLRFGELS 252
>gi|406025137|ref|YP_006705438.1| deoxyribodipyrimidine photo-lyase [Cardinium endosymbiont cEper1 of
Encarsia pergandiella]
gi|404432736|emb|CCM10018.1| Deoxyribodipyrimidine photo-lyase [Cardinium endosymbiont cEper1 of
Encarsia pergandiella]
Length = 476
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 75/313 (23%), Positives = 130/313 (41%), Gaps = 37/313 (11%)
Query: 32 VYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQR 91
+ W+ R+ R++DN A+ +K + QF R+L F+ L LL
Sbjct: 6 IVWLRRNLRLQDNKPFAAALRHVDKVLPIFIFDTTILKQFPNPYDRRLSFLAHTLCLLHD 65
Query: 92 NIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTD--FSPLREIRRCKDKICNRVSDSV 149
++ + F+F G + IP V + + D + P I R + + ++
Sbjct: 66 ALKR-LEGSLFVFHGTPLEIIPKLVNDLKVEAIYADEDYEP-ANIERDR-TLQKALAPHC 122
Query: 150 TIHEVDAHNVVP-------------VWVASEKLEYSAKTLRGKI--NKLLPEYLIDYPML 194
T+H H ++ V+ A K + +G + N+LL EY +Y +
Sbjct: 123 TLHLYCDHLLIKPGTMRTQSNQPYKVYTAYMKAFRAYIAAQGALAQNRLLIEY--NYTLE 180
Query: 195 EQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSK--DGFLTKR 252
+ +SID + + VL+ ++G+ +D+ + G DGFL +
Sbjct: 181 GRLFIPSALDGRSIDLNVGVEKVLK------QVGYIYK-KDSLWDPKNGVNPLDGFLKNQ 233
Query: 253 LKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPE-AIDTFLEELIVR 311
+ +Y +R+ L+ S PYL FG IS + C RKA L + T++ ELI
Sbjct: 234 VDHYKANRDF-LELNGTSRCGPYLRFGLISIRSC---YRKACALASNVGVTTWINELI-W 288
Query: 312 RELADNFCFYQPN 324
RE N ++ PN
Sbjct: 289 REFYANILYHFPN 301
>gi|222096635|ref|YP_002530692.1| deoxyribodipyrimidine photolyase [Bacillus cereus Q1]
gi|221240693|gb|ACM13403.1| deoxyribodipyrimidine photolyase [Bacillus cereus Q1]
Length = 476
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 70/302 (23%), Positives = 126/302 (41%), Gaps = 38/302 (12%)
Query: 37 RDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQRNIEET 96
+D R+ DN AL A VPV V F +G+ ++ ++ + ++R +E
Sbjct: 11 KDFRLYDNPALFEAAQSGEV--VPVYVHDETFS--IGSASK--WWLHHTIIDVKRQLEAL 64
Query: 97 FQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICNRVSD-SVTIHEVD 155
L + +G + I + +++ G + + + E + K+ + D +T E +
Sbjct: 65 GSTLI-IRKGNTLEEILSLIKQLGITAVYWNICYDPERLQFNQKMKMMLEDKGITCKEFN 123
Query: 156 AHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQPIEKWTGTRQSIDWDSIIA 215
+H ++ W+ +K K N + ++ +PI K QSI W S +
Sbjct: 124 SHLLLEPWIIKKKDNTEYKVFTPFYNAFQKQ------VISKPISK----VQSIKWGSSLP 173
Query: 216 AVLRKGAE--VPEIGWC-------ESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKP 266
A L +P I W E E+ A + K F + +L +Y R+ P
Sbjct: 174 ASLSVSELHLLPTIPWTSHMESIWEPTEEGAYKTFKK----FFSSKLVSYSEGRDFP-NQ 228
Query: 267 RALSGLSPYLHFGQISAQRC--ALEARKARKLCP---EAIDTFLEELIVRRELADNFCFY 321
A S L+PYL FGQIS + L + K C + +++F+ + I RE + ++
Sbjct: 229 NAHSMLAPYLSFGQISVKLMYHYLINKSNEKQCSLFEQQVNSFIRQFI-WREFSYYLLYH 287
Query: 322 QP 323
P
Sbjct: 288 YP 289
>gi|145258924|ref|XP_001402217.1| deoxyribodipyrimidine photo-lyase [Aspergillus niger CBS 513.88]
gi|134074832|emb|CAK38946.1| unnamed protein product [Aspergillus niger]
Length = 584
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 75/285 (26%), Positives = 124/285 (43%), Gaps = 28/285 (9%)
Query: 31 VVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGA---KARQLGFMLRGLR 87
VV+W D R+ DN L A A ++ +P+ + L + L A A ++ MLR L
Sbjct: 94 VVHWFKTDLRLHDNRGLQMAYQVAREHKLPLVGLYILSPEDLTAHLSSAPRVDLMLRTLE 153
Query: 88 LLQRNIEETFQILFFLFQGEAEDNIP----NFVRECGASLLVTDFS-PLREIRRCKD--K 140
LL+R++ E I ++ E ++IP + +E GA+ L + + E+RR +
Sbjct: 154 LLRRDLSE-LDIPLYMETQEKRNDIPQRIIDLCQEWGATHLFANLEYEVDELRREAKLVR 212
Query: 141 ICNRVSDSVTIHEVDAHNVVPV----WVASEKLEYSAKT--LRGKINKL--LPEYL--ID 190
+C R I AH+ V V+ + +Y+ + R L PEYL D
Sbjct: 213 LCARNG----IRFEAAHDTCVVTPGKLVSQQGKQYAVYSPWFRAWCAFLNENPEYLEVAD 268
Query: 191 YPMLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLT 250
P P + + + +A ++ +E + + E + E L+ + FL
Sbjct: 269 EPG-SNPGDARKHFKTLFGCEVPVAPENKRLSEEEKTRFRELYPEGEHEALR-RLEAFLE 326
Query: 251 KRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARK 295
++ +Y D N L R S LSPY G +SA+ +ARK K
Sbjct: 327 EKANDY-DDLRNTLAGRNTSVLSPYFASGSLSARTAVFQARKKNK 370
>gi|424865450|ref|ZP_18289315.1| deoxyribodipyrimidine photo-lyase [SAR86 cluster bacterium SAR86B]
gi|400758718|gb|EJP72920.1| deoxyribodipyrimidine photo-lyase [SAR86 cluster bacterium SAR86B]
Length = 388
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 39/66 (59%), Gaps = 5/66 (7%)
Query: 231 ESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEA 290
E GE+ A ++LK FL ++K Y DRN+P+ S +SPYL G +S++RC LEA
Sbjct: 119 ELGEEGAKKILKN----FLKNKVKRYNEDRNDPI-IEGTSRISPYLALGILSSKRCILEA 173
Query: 291 RKARKL 296
K L
Sbjct: 174 LKLNDL 179
>gi|392592765|gb|EIW82091.1| hypothetical protein CONPUDRAFT_53990 [Coniophora puteana
RWD-64-598 SS2]
Length = 562
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 84/349 (24%), Positives = 143/349 (40%), Gaps = 72/349 (20%)
Query: 19 LKQGSLDKKRG-PVVYWM-FRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGA-- 74
LKQ + K+G VV+WM D R+ DN AL A +A +NN+P+ + F + Q A
Sbjct: 33 LKQPVKNPKKGRSVVHWMRMCDLRLVDNRALSRASIEAKENNIPLVILFVVSPQDYIAHD 92
Query: 75 -KARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIP----NFVRECGASLLVTDFS 129
AR++ F LR L +L+ ++ E I + ++P +FV+ A+ L +
Sbjct: 93 RSARRIDFTLRNLEVLKTSLNE-MNIPLYAITHSPRTSLPERVISFVQSVDATCLFANME 151
Query: 130 P-----LREIRRCKDKICNRVSDSVTIHEVDAH---------NVVPVWVASEKLEYSAKT 175
R+I+ C+ N + + + A V+ ++L +
Sbjct: 152 YEVDELRRDIKVCQLAKTNNIKTTFFHDKCIAEPGLCMTKDGRAYTVYSPYQRL--WSTI 209
Query: 176 LRGKINKLL----------PEYLID---YPMLEQPIEKWTG------------TR----- 205
+ G ++ + E + D P+ EQPI ++ G TR
Sbjct: 210 VNGNLDTYMREAPPIAANSAEVMKDPTLSPLFEQPIPEFVGGFKLETNNKDVMTRVWPAG 269
Query: 206 QSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLK 265
+ +++ LR A ++G + +L+G+++ RLK Y R+ +
Sbjct: 270 HDAAKEVVLSRFLRTKARASQLGEVDP-------LLEGAEESDRKSRLKEYGNARDR-VD 321
Query: 266 PRALSGLSPYLHFGQISAQRC---ALEARKARKLCPEAIDTFLEELIVR 311
S LS YL G IS + C +E +KA K +DT E I R
Sbjct: 322 KDTTSRLSAYLAAGVISPRECVRATMELQKAGK-----VDTSRENGIGR 365
>gi|347754095|ref|YP_004861659.1| deoxyribodipyrimidine photo-lyase type I [Candidatus
Chloracidobacterium thermophilum B]
gi|347586613|gb|AEP11143.1| deoxyribodipyrimidine photo-lyase type I [Candidatus
Chloracidobacterium thermophilum B]
Length = 475
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 83/331 (25%), Positives = 128/331 (38%), Gaps = 63/331 (19%)
Query: 31 VVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQ 90
++ W RD R+ DN + A A + VPV + + A ++ F+L LR L
Sbjct: 5 ILCWFRRDLRLDDN-TALLAAYAAAEEVVPVFIFDDAILSRPDTGAVRVAFLLESLRNLD 63
Query: 91 RNIEETFQILFFLFQGEAEDNIPNFVRECGASLLV--TDFSPLREIRRCKDKICNRVSDS 148
N+ L L +G E + V E AS + D P R + + +
Sbjct: 64 ENLRARGSRLL-LRRGRPEHVLAQLVTETAASAVYFNRDVEPFALARDAR--VRAHLEGR 120
Query: 149 VTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYP----MLEQPIEKWTGT 204
+ D + A E + A T Y + P +L QPI +
Sbjct: 121 CAVEGFDDGGLT----APEAVRTKAGT----------PYTVFTPYRQAVLAQPIPR---- 162
Query: 205 RQSIDWDSIIAAVLRKGAEVPEIGWCE--------------SGEDAAMEVLKGSKDGFLT 250
+ A+LR A+VP W GE +A L+G F+
Sbjct: 163 ------PRLAPAMLRTPADVPSDPWPSLKDLGFATSVSPPPGGETSAQARLQG----FIQ 212
Query: 251 KRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIV 310
L Y T+R+ L S LSPYL FG +S +R AR+A +++++ ELI
Sbjct: 213 NGLARYATERDV-LSADGTSRLSPYLRFGCLSPRRAYWAAREAVPEGSPGMESWIAELIW 271
Query: 311 R---RELADNFCF-----YQPNYDSLKGAWE 333
R R++ +F + ++ YD L AWE
Sbjct: 272 RDFYRQILFHFPYVETGAFRRAYDDL--AWE 300
>gi|114797406|ref|YP_760502.1| deoxyribodipyrimidine photolyase family protein [Hyphomonas
neptunium ATCC 15444]
gi|114737580|gb|ABI75705.1| deoxyribodipyrimidine photolyase family protein [Hyphomonas
neptunium ATCC 15444]
Length = 485
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 83/326 (25%), Positives = 124/326 (38%), Gaps = 55/326 (16%)
Query: 30 PVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLG-----FMLR 84
P + W D R+ DN AL AV+ P+ + L + GA R++G ++ +
Sbjct: 6 PAILWFREDLRLTDNPALNAAVNSGR----PLICVY-LRETGAGAP-REMGGASRWWLNK 59
Query: 85 GLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFS---PLREIRRCKDKI 141
L L ++E L L G AE IP V E GA+ + + P RE K
Sbjct: 60 SLASLGASLEAIGGKLT-LRTGPAEKIIPALVEETGAAAVFWNRRYGLPERETDAAIKKT 118
Query: 142 -------CNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLP--EYLIDYP 192
C + + + D W + A + K +P + +
Sbjct: 119 LKDNGVECQSFNGRLLMEPWDLKTGSGGWYKVFTPFWRALQAQYKPPAFIPSPKKIAGAS 178
Query: 193 MLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKR 252
+ ++ W + DW IAA E GE A + L D FL
Sbjct: 179 AETENLKDWGLHPEKPDWSGGIAAA------------WEPGEVGAQKRL----DAFLDGP 222
Query: 253 LKNYPTDRNNPLKPRALSGLSPYLHFGQIS------AQRCALEARKARKLCPEAIDTFLE 306
+ +Y RN P S LSP+L FG+I A R LEA++A + ++ FL
Sbjct: 223 VSDYVGTRNLPGVSTGTSRLSPHLRFGEIGPAQIWRAVRARLEAQQADE---DSARVFLS 279
Query: 307 ELIVRRELADNFCFYQP-----NYDS 327
E I RE + +Y P NY+S
Sbjct: 280 E-IAWREFSYTLLYYNPALATENYNS 304
>gi|409079787|gb|EKM80148.1| hypothetical protein AGABI1DRAFT_38863 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 539
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 49/84 (58%), Gaps = 5/84 (5%)
Query: 25 DKKRGPVV-YWM-FRDQRVRDNWALIHAVDQANKNNVPVAVAFNLF--DQFLGAK-ARQL 79
D +G VV YWM F D R+ DN AL A +QA K+ +P+AV F L D F + +R++
Sbjct: 3 DPDKGKVVFYWMRFADLRITDNRALHKASEQAQKDGIPLAVLFVLSPEDYFAHDRSSRRI 62
Query: 80 GFMLRGLRLLQRNIEETFQILFFL 103
F+LR L+LLQ + L+ +
Sbjct: 63 DFVLRNLKLLQEAFSKLHIPLYVI 86
>gi|228915743|ref|ZP_04079325.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar
pulsiensis BGSC 4CC1]
gi|228843918|gb|EEM88985.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar
pulsiensis BGSC 4CC1]
Length = 476
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 65/302 (21%), Positives = 122/302 (40%), Gaps = 38/302 (12%)
Query: 37 RDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQRNIEET 96
+D R+ DN AL A + ++D+ + ++ + ++R +E T
Sbjct: 11 KDFRLYDNPALFEAAQSGE------VLPLYVYDETFSIGSASKWWLHHTIIDVKRQLE-T 63
Query: 97 FQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICNRVSD-SVTIHEVD 155
+ +G + I + +++ G + + + E + K+ + D +T E +
Sbjct: 64 LGSTLIIRKGNTLEEILSLIKQLGITAVYWNICYDPERLQFNQKMKMMLEDKGITCKEFN 123
Query: 156 AHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQPIEKWTGTRQSIDWDSIIA 215
+H ++ W+ +K K N + ++ +PI K QSI W S +
Sbjct: 124 SHLLLEPWIIKKKDNTEYKVFTPFYNAFQKQ------VISKPISK----VQSIKWGSSLP 173
Query: 216 AVLRKGAE--VPEIGWC-------ESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKP 266
A L +P I W E E+ A + K F + +L +Y R+ P
Sbjct: 174 ASLSVSELHLLPTIPWTSHMESIWEPTEEGAYKTFKK----FFSSKLVSYSEGRDFP-NQ 228
Query: 267 RALSGLSPYLHFGQISAQRC--ALEARKARKLCP---EAIDTFLEELIVRRELADNFCFY 321
A S L+PYL FGQIS + L + K C + +++F+ + I RE + ++
Sbjct: 229 NAHSMLAPYLSFGQISVKLIYHYLINKSNEKQCSLFEQQVNSFIRQFI-WREFSYYLLYH 287
Query: 322 QP 323
P
Sbjct: 288 YP 289
>gi|163746389|ref|ZP_02153747.1| deoxyribodipyrimidine photolyase, putative [Oceanibulbus indolifex
HEL-45]
gi|161380274|gb|EDQ04685.1| deoxyribodipyrimidine photolyase, putative [Oceanibulbus indolifex
HEL-45]
Length = 473
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 77/305 (25%), Positives = 127/305 (41%), Gaps = 32/305 (10%)
Query: 30 PVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLL 89
P++ W RD R+ D+ AL A + + +P+ + N D A +LG L L
Sbjct: 6 PLIVWFRRDLRLSDHPALAAAC-KTGRPVIPLFIHDNQSDALGAAPKFRLGL---ALACL 61
Query: 90 QRNIEETFQILFFLFQGEAEDNIPNFVRECGASLL----VTDFSPLREIRRCKDKICNRV 145
++E L L +G+A D + + + + GA + + D + + + KD +
Sbjct: 62 GDTLKEKGSRLI-LRRGDALDVLRDVIEQTGAGAVYWSRLYDPAAIDRDTKVKDAL---K 117
Query: 146 SDSVTIHEVDAHNVVPVWVASEKLE--YSA-----KTLRGKINKLLPEYLIDYPMLEQPI 198
D V H + W K Y K++RG+ + E L + P
Sbjct: 118 EDGVEACSFAGHLMFEPWTVETKTGGFYKVFTPYWKSVRGRD---VAEPLATPSEIRAP- 173
Query: 199 EKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLKNYPT 258
E W + DW + A +++G +V + GE AA L GS F+ + Y
Sbjct: 174 EDWPDSDVLDDWQ--MDAEMQRGRDVVRP-YVRLGEAAAQARL-GS---FIADIVDGYDE 226
Query: 259 DRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVRRELADNF 318
R+ P + SGLS L G+IS C ++A + +TFL+EL RE A +
Sbjct: 227 SRDMPGED-GTSGLSENLSLGEISPAHCWHAGQRAMQEGKRGAETFLKEL-AWREFAYHL 284
Query: 319 CFYQP 323
++ P
Sbjct: 285 MYHTP 289
>gi|408388110|gb|EKJ67801.1| hypothetical protein FPSE_12017 [Fusarium pseudograminearum CS3096]
Length = 593
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 81/314 (25%), Positives = 129/314 (41%), Gaps = 49/314 (15%)
Query: 31 VVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKAR---QLGFMLRGLR 87
VV+W D R+ DN AL A D+A + VP+ + + Q A R ++ FMLR L
Sbjct: 101 VVHWFKMDLRISDNRALALASDKAKEAGVPLIALYIISPQDYEAHVRAPVRIDFMLRTLS 160
Query: 88 LLQRNIEETFQILFFLFQGEAEDNIPN----FVRECGASLLVTDFS-PLREIRRCKDKIC 142
+++ ++ + I ++ E ++P+ + E GAS L + + E+RR I
Sbjct: 161 VIKEDLAK-LDIPLYVETVEKRKHLPDRILELMDEWGASHLYANMEYEVDELRREAAMIK 219
Query: 143 NRVSDSVTIHEVDAHNVVP-----VWVASEKLEYSA--KTLRGKINKLLPEYLIDYPMLE 195
+ + V +VP + Y+ KT I++ L D L
Sbjct: 220 DFAENGKAFEVVHDTCIVPPGELHTGAGKQYAVYTPWLKTWIAHIHENL-----DLLELY 274
Query: 196 QPIEKWTGTRQSIDWDSIIAAVLRK--GAEVPEIGWCESGEDAAMEVLK-----GSKDG- 247
+P EK + + +K E+PE + D E L+ G +
Sbjct: 275 EPPEKNPDSARK---------KFKKLFNVEIPEAPKSKRLGDGEKERLRSLWPCGEHEAK 325
Query: 248 -----FLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEAR---KARKL--C 297
F +R+ NY RN P A S LS +L G ISA+ C AR K +KL
Sbjct: 326 KRLGKFCEERIGNYHEKRNIPADA-ATSSLSVHLASGTISARTCVRTARDRNKTKKLNGG 384
Query: 298 PEAIDTFLEELIVR 311
+ I T++ E+ R
Sbjct: 385 NDGIQTWISEVAWR 398
>gi|170780895|ref|YP_001709227.1| deoxyribodipyrimidine photolyase [Clavibacter michiganensis subsp.
sepedonicus]
gi|169155463|emb|CAQ00571.1| putative deoxyribodipyrimidine photolyase [Clavibacter
michiganensis subsp. sepedonicus]
Length = 508
Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 77/322 (23%), Positives = 133/322 (41%), Gaps = 46/322 (14%)
Query: 25 DKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLR 84
D+ GP + W+ D RV DN A+ AV++ P+ V + L ++ G R LG R
Sbjct: 18 DQAHGPTIVWLRDDLRVADNPAMHAAVERGE----PIVVLYVLDEESAG--IRPLGGAAR 71
Query: 85 -GLRLLQRNIEETFQIL---FFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDK 140
L + + E+ + L L +G+A D + + VRE GA ++ +
Sbjct: 72 WWLHMSLSRLGESLRGLGSPLVLRRGKAADVVDDLVREVGAGAVLWNRRYGGAEIAVDTA 131
Query: 141 ICNRVSD-SVTIHEVDAHNVVPVWVASEKL--EYSAKTLRGKINKLLPEYLIDYP---ML 194
I + D + + +V W K + T K + E +P L
Sbjct: 132 IKKDLGDRGLDVRSFQGSLLVEPWTVVNKQGEPFRVYTPFWKTAQDREEPRKPFPAPDAL 191
Query: 195 EQP--------IEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKD 246
E P ++ W DW AA LR+ C+ GE A ++ L+
Sbjct: 192 EAPRKAPRSDDLDDWGLLPTKPDW----AAGLREA--------CDPGEAAGLQRLE---- 235
Query: 247 GFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRC--ALEARKARKLCPEAIDT- 303
F+ L++Y R+ P S LS YL +G++S + ++ + +K+ + ++
Sbjct: 236 DFVHHELEDYAAQRDEPAA-MTTSRLSAYLRWGEVSPFQVWHRVQRTRGKKVGGDEVNAT 294
Query: 304 -FLEELIVRRELADNFCFYQPN 324
FL EL RE + + ++QP+
Sbjct: 295 KFLSELGW-REFSYHLLYHQPD 315
>gi|407800097|ref|ZP_11146965.1| deoxyribodipyrimidine photolyase, putative [Oceaniovalibus
guishaninsula JLT2003]
gi|407058089|gb|EKE44057.1| deoxyribodipyrimidine photolyase, putative [Oceaniovalibus
guishaninsula JLT2003]
Length = 474
Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 48/160 (30%), Positives = 68/160 (42%), Gaps = 17/160 (10%)
Query: 179 KINKLLPEYLIDYPMLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEV--PEIGWCESGEDA 236
K+ P + P Q + W T W + + +GA + P C GE A
Sbjct: 155 KVKDRDPGPALTAPTALQAPDGWPETDDPAIWG--LGTAMNRGAAIVAPH---CHVGEAA 209
Query: 237 AMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKL 296
A L FL R++ Y T R+ P SGLS L +G+IS + C A++A
Sbjct: 210 AQTRLAV----FLRDRVEGYATARDIPAM-HGTSGLSENLTYGEISIRSCWHSAQRAIAE 264
Query: 297 CPEAIDTFLEELIVRRELADNFCFYQPNYDSLKGAW--EW 334
TFL+EL V RE A + ++ P + G W EW
Sbjct: 265 GKRGAPTFLKEL-VWREFAYHLLYHTPRL--ITGNWRPEW 301
>gi|229199867|ref|ZP_04326458.1| Deoxyribodipyrimidine photolyase [Bacillus cereus m1293]
gi|228583609|gb|EEK41836.1| Deoxyribodipyrimidine photolyase [Bacillus cereus m1293]
Length = 476
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 65/302 (21%), Positives = 122/302 (40%), Gaps = 38/302 (12%)
Query: 37 RDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQRNIEET 96
+D R+ DN AL A + ++D+ + ++ + ++R +E
Sbjct: 11 KDFRLYDNPALFEAAQSGE------VLPLYVYDETFSIGSASKWWLHHTIIDVKRQLEAL 64
Query: 97 FQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICNRVSD-SVTIHEVD 155
L + +G + I + +++ G + + + E + K+ + D +T E +
Sbjct: 65 GSTLI-IRKGNILEEILSLIKQLGITAVYWNICYDPERLQFNQKVKMMLEDKGITCKEFN 123
Query: 156 AHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQPIEKWTGTRQSIDWDSIIA 215
+H ++ W+ +K K N + ++ +PI K QSI W S +
Sbjct: 124 SHLLLEPWIIKKKDNTEYKVFTPFYNAFQKQ------VISKPISK----VQSIKWGSSLP 173
Query: 216 AVLRKGAE--VPEIGWC-------ESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKP 266
A L +P I W E E+ A + K F + +L +Y R+ P
Sbjct: 174 ASLSVSELHLLPTIPWTSHMESIWEPTEEGAYKTFKK----FFSSKLVSYSEGRDFP-NQ 228
Query: 267 RALSGLSPYLHFGQISAQRC--ALEARKARKLCP---EAIDTFLEELIVRRELADNFCFY 321
A S L+PYL FGQIS + L + K C + +++F+ + I RE + ++
Sbjct: 229 NAHSMLAPYLSFGQISVKVMYHYLINKSNEKQCSLFEQQVNSFIRQFI-WREFSYYLLYH 287
Query: 322 QP 323
P
Sbjct: 288 YP 289
>gi|89054480|ref|YP_509931.1| deoxyribodipyrimidine photo-lyase type I [Jannaschia sp. CCS1]
gi|88864029|gb|ABD54906.1| deoxyribodipyrimidine photo-lyase type I [Jannaschia sp. CCS1]
Length = 468
Score = 48.1 bits (113), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 73/311 (23%), Positives = 124/311 (39%), Gaps = 26/311 (8%)
Query: 31 VVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQ 90
+YW+ RD R+ DN AL+ A ++ VP+ + + + A +LG G+
Sbjct: 3 TIYWVRRDFRLSDNPALVAACERGAV--VPLFICDEVIEGHGAAPKWRLGL---GVEAFA 57
Query: 91 RNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTD--FSPLREIRRCKDKICNRVSDS 148
+ L L +G+A + + + A+ + + + P R K + D
Sbjct: 58 EALHAVGSKLI-LRRGDALPTLRAVIADVSANAVHWNRLYDPDSRKRDEAVKAALK-EDG 115
Query: 149 VTIHEVDAHNVVPVWVASEKLE--YSAKTLRGK-INKLLPEYLIDYPMLEQPIEKWTGTR 205
V H + W K Y T K + P + P + P + W +
Sbjct: 116 VEAISHKGHVLFEPWTVETKTGGYYKVYTPFWKMVRDRSPGEALAAPKIPAP-DTWPASD 174
Query: 206 QSIDWDSIIAAVLRKGAEV--PEIGWCESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNP 263
DW + + +GAEV P + GE AA +G F+ + +Y R+N
Sbjct: 175 DLSDWH--LGKAMNRGAEVVAPHL---NVGEQAA----QGRLGAFIGNGIDDYADARDN- 224
Query: 264 LKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVRRELADNFCFYQP 323
L S LS L +G+ISA++C ++A +TFL+E +V R+ A + + P
Sbjct: 225 LAKNGTSLLSENLAYGEISARQCWHAGQRAMADGKPGAETFLKE-VVWRDFAYHLVHHTP 283
Query: 324 NYDSLKGAWEW 334
+ EW
Sbjct: 284 RITTANWREEW 294
>gi|346992466|ref|ZP_08860538.1| deoxyribodipyrimidine photo-lyase [Ruegeria sp. TW15]
Length = 477
Score = 48.1 bits (113), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 77/324 (23%), Positives = 136/324 (41%), Gaps = 37/324 (11%)
Query: 24 LDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQF--LGAKAR-QLG 80
+D P++ W RD R+RD AL AV ++ P+ F L DQ LGA + +LG
Sbjct: 1 MDPGHSPIILWFRRDLRLRDYPALTAAV----RSGRPIVPVFILDDQVQALGAAPKWRLG 56
Query: 81 FMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTD--FSPLREIRRCK 138
GL + +++ L L +G A + + + E GA + + P + I R K
Sbjct: 57 L---GLEAFAKALDQIGSNL-ILRRGTALRVLKDLIHETGAGAVFWSRAYDP-KAINRDK 111
Query: 139 DKICNRVSDSVTIHEVDAHNVVPVWVASEK-------LEYSAKTLRGKINKLLPEYLIDY 191
+ + + H + W + K +++ G+ + +PE
Sbjct: 112 HIKASLNEQGIEVRSFAGHLLFEPWTIATKAGQPFRVFTPMWRSVSGR-DVAMPE---PT 167
Query: 192 PMLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTK 251
P + W + + DW+ + +++GA + + GE AA++ L D FL +
Sbjct: 168 PARIAKPDLWPASDRLSDWN--LDRDMQRGATIVR-PFVRPGEAAALDQL----DRFL-E 219
Query: 252 RLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVR 311
+ +Y R+ L S LS YL G+I + + A + + FL +L V
Sbjct: 220 NIDHYQEARDR-LDQVGTSDLSEYLSLGEIGPRTIWHRVQNADRTGSRGGEAFLRQL-VW 277
Query: 312 RELADNFCFYQPNY--DSLKGAWE 333
RE A + ++ P+ D+ K W+
Sbjct: 278 REFAYHLMYHWPHLLTDNWKPEWD 301
>gi|120555269|ref|YP_959620.1| deoxyribodipyrimidine photo-lyase [Marinobacter aquaeolei VT8]
gi|120325118|gb|ABM19433.1| deoxyribodipyrimidine photo-lyase type I [Marinobacter aquaeolei
VT8]
Length = 463
Score = 48.1 bits (113), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 55/95 (57%), Gaps = 13/95 (13%)
Query: 232 SGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSG---LSPYLHFGQISAQRCAL 288
+GEDAA E L + FLT+R K+Y +R+ P AL G LSPYL G +S ++C +
Sbjct: 202 TGEDAAHEQL----EAFLTERAKDYKDNRDFP----ALDGTSQLSPYLANGVLSGRQCLI 253
Query: 289 EARKARKLCPEAIDTFLEELIVRRELADNFCFYQP 323
A+++ L E ++T++ E I R+ + ++ P
Sbjct: 254 AAKQS-GLSGEGVETWINE-IAWRDFYIHILYHYP 286
>gi|121703429|ref|XP_001269979.1| deoxyribodipyrimidine photo-lyase Phr1, putative [Aspergillus
clavatus NRRL 1]
gi|119398122|gb|EAW08553.1| deoxyribodipyrimidine photo-lyase Phr1, putative [Aspergillus
clavatus NRRL 1]
Length = 586
Score = 48.1 bits (113), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 78/314 (24%), Positives = 131/314 (41%), Gaps = 28/314 (8%)
Query: 2 ASLTPPSTAVQPGRIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPV 61
+L P A Q Q + K VV+W D R+ DN AL A A ++N+P+
Sbjct: 66 GTLERPIEARQKAYEETQNQRKVIKPNNAVVHWFKSDLRLHDNRALQMAYQTAKEHNIPL 125
Query: 62 AVAFNLFDQFLGA---KARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIP----N 114
+ L Q L A ++ LR L L+R++ E I ++ E +IP +
Sbjct: 126 IGLYILSPQDLTAHLSSPARVDLTLRTLDQLKRDLNE-LDIPLYMETQETRKDIPQRIID 184
Query: 115 FVRECGASLLVTDFS-PLREIRRCKDKICNRVSDSVTIHEV-DAHNVVPVWVASEKLEYS 172
+E G + + + + E+RR + + + DA V P VAS++ +
Sbjct: 185 LCQEWGVNNIFANLEYEVDELRREAKLVRMCAQNGIKFETAHDACVVTPGAVASQQGKQY 244
Query: 173 AKTLRGKINKLLPEYLIDYP----MLEQPIEKWTGTRQSID--WDSIIAAVLRKGAEVPE 226
A + + +L + P + E+P R+ ++S + A E
Sbjct: 245 A--VYSPWYRAWLVHLRENPDCLELSEEPGSNPGNARKHFAKLFESEVPAAPENKRLSDE 302
Query: 227 ----IGWC-ESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQI 281
G +GE A++ L + F+ +R+K+Y D N + + S LSPY G +
Sbjct: 303 QRKYFGQLYPAGEHEALDRL----EKFVEERVKDY-ADARNMMFGQTTSILSPYFASGSL 357
Query: 282 SAQRCALEARKARK 295
SA+ + ARKA K
Sbjct: 358 SARTAVVHARKANK 371
>gi|423575239|ref|ZP_17551358.1| hypothetical protein II9_02460 [Bacillus cereus MSX-D12]
gi|401209847|gb|EJR16604.1| hypothetical protein II9_02460 [Bacillus cereus MSX-D12]
Length = 476
Score = 47.8 bits (112), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 65/302 (21%), Positives = 122/302 (40%), Gaps = 38/302 (12%)
Query: 37 RDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQRNIEET 96
+D R+ DN AL A + ++D+ + ++ + ++R +E
Sbjct: 11 KDFRLYDNPALFEAAQSGE------VLPLYVYDETFSIGSASKWWLHHTIIDVKRQLEAL 64
Query: 97 FQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICNRVSD-SVTIHEVD 155
L + +G + I + +++ G + + + E + K+ + D +T E +
Sbjct: 65 GSTLI-IRKGNILEEILSLIKQLGITAVYWNICYDPERLQFNQKMKMMLEDKGITCKEFN 123
Query: 156 AHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQPIEKWTGTRQSIDWDSIIA 215
+H ++ W+ +K K N + ++ +PI K QSI W S +
Sbjct: 124 SHLLLEPWIIKKKDNTEYKVFTPFYNAFQKQ------VISKPISK----VQSIKWGSSLP 173
Query: 216 AVLRKGAE--VPEIGWC-------ESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKP 266
A L +P I W E E+ A + K F + +L +Y R+ P
Sbjct: 174 ASLSVSELHLLPTIPWTSHMESIWEPTEEGAYKTFKK----FFSSKLVSYSEGRDFP-NQ 228
Query: 267 RALSGLSPYLHFGQISAQRC--ALEARKARKLCP---EAIDTFLEELIVRRELADNFCFY 321
A S L+PYL FGQIS + L + K C + +++F+ + I RE + ++
Sbjct: 229 NAHSMLAPYLSFGQISVKVMYHYLINKSNEKQCSLFEQQVNSFIRQFI-WREFSYYLLYH 287
Query: 322 QP 323
P
Sbjct: 288 YP 289
>gi|365887145|ref|ZP_09426019.1| Deoxyribodipyrimidine photo-lyase (DNA photolyase)
(Photoreactivating enzyme) [Bradyrhizobium sp. STM 3809]
gi|365337300|emb|CCD98550.1| Deoxyribodipyrimidine photo-lyase (DNA photolyase)
(Photoreactivating enzyme) [Bradyrhizobium sp. STM 3809]
Length = 481
Score = 47.8 bits (112), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 84/326 (25%), Positives = 128/326 (39%), Gaps = 66/326 (20%)
Query: 30 PVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQ------FLGAKARQLGFML 83
P + W R+ D+ AL A K+ PV ++ ++DQ LGA R ++
Sbjct: 5 PTIVWFRESLRLSDHPALYAAA----KSGGPVVCSY-IYDQESSGLRHLGAATRW--WLA 57
Query: 84 RGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLL----VTDFSPLR-----EI 134
+ LR LQ +++ T + +G A + RE AS + V P R E
Sbjct: 58 QSLRALQADLK-TLGADLIIRRGRAAQVLVELARETRASAVYWNDVAQAGPRRVASSVEA 116
Query: 135 RRCKDKICNRV------SDSVTIHEVDAHN---VVPVWVASEKLEYSAKTLR--GKINKL 183
+ + +RV D T+ D P W L K L G++ +
Sbjct: 117 GLGEIGVASRVFPDDLLVDPATMSGKDGRGPRVFTPFWKRVLALGDPPKPLPTPGRLAAV 176
Query: 184 --LPEYLIDYPMLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVL 241
+ +D MLE W G ++ ++GE AA + L
Sbjct: 177 PNVVSLTVDELMLEPTRPDWAGGLRAT---------------------WQAGERAAQQRL 215
Query: 242 KGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKA---RKLCP 298
GS FL + +Y DR+ P A S LSP+L FG+IS ++ AR A R
Sbjct: 216 -GS---FLESAVGSYAGDRDRP-DIDATSRLSPHLRFGEISPRQIWYAARFAAEERPALA 270
Query: 299 EAIDTFLEELIVRRELADNFCFYQPN 324
+ ID FL E I RE + + + P+
Sbjct: 271 KGIDKFLSE-IGWREFSRHLLYNNPD 295
>gi|301054669|ref|YP_003792880.1| deoxyribodipyrimidine photolyase [Bacillus cereus biovar anthracis
str. CI]
gi|300376838|gb|ADK05742.1| deoxyribodipyrimidine photolyase [Bacillus cereus biovar anthracis
str. CI]
Length = 476
Score = 47.8 bits (112), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 69/302 (22%), Positives = 125/302 (41%), Gaps = 38/302 (12%)
Query: 37 RDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQRNIEET 96
+D R+ DN AL A +PV V F +G+ ++ ++ + ++R +E
Sbjct: 11 KDFRLYDNPALFEAAQSGEV--LPVYVHDETFS--IGSASK--WWLHHTIIDVKRQLEAL 64
Query: 97 FQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICNRVSD-SVTIHEVD 155
L + +G + I + + + G + + + E + K+ + D +T E +
Sbjct: 65 GSTLI-IRKGNTMEEILSLIEQLGITAVYWNICYDPERLQFNQKMKMMLEDKGITCKEFN 123
Query: 156 AHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQPIEKWTGTRQSIDWDSIIA 215
+H ++ W+ +K K N + ++ +PI K QSI W S +
Sbjct: 124 SHLLLEPWIIKKKDNTEYKVFTPFYNAFQKQ------VISKPISK----VQSIKWGSSLP 173
Query: 216 AVLRKGAE--VPEIGWC-------ESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKP 266
A L +P I W E E+ A + K F + +L +Y R+ P
Sbjct: 174 ASLSVSELHLLPTIPWTSHMESIWEPTEEGAYKTFKK----FFSSKLVSYSEGRDFP-NQ 228
Query: 267 RALSGLSPYLHFGQISAQRC--ALEARKARKLCP---EAIDTFLEELIVRRELADNFCFY 321
A S L+PYL FGQIS + L + K C + +++F+ + I RE + ++
Sbjct: 229 NAHSMLAPYLSFGQISVKLIYHYLINKSNEKQCSLFEQQVNSFIRQFI-WREFSYYLLYH 287
Query: 322 QP 323
P
Sbjct: 288 YP 289
>gi|392553658|ref|ZP_10300795.1| deoxyribodipyrimidine photolyase [Pseudoalteromonas spongiae
UST010723-006]
Length = 467
Score = 47.8 bits (112), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 78/316 (24%), Positives = 132/316 (41%), Gaps = 46/316 (14%)
Query: 31 VVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQ 90
+YW+ RD R+ DN AL +A+ Q ++ V + A+ + Q Q+ F+ R L
Sbjct: 3 TLYWIRRDFRLDDNPALFYALQQNCQHAVFI-TAYETW-QAHNHSGIQIDFIERHLNWFS 60
Query: 91 RNIEETFQILFFLFQGEAEDNIPN---FVRECGASLLVTDFSP-LREIRRCKDKICNRVS 146
+ + + F+ E I F +E + +V + P LRE + +D N+ +
Sbjct: 61 DQLAKLGIKVSFIECDTFEQQIAQLTEFCQENDITSVVANSEPELRE--KIRD---NKAA 115
Query: 147 DSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQPIEK-WTGTR 205
+ + DA ++P Y A + K N++ + P +K W T
Sbjct: 116 QQLELTLYDADTILP---------YGA--VLNKQNEMFKVF--------TPYKKAWVKTL 156
Query: 206 QSIDWDSIIAAVLRKGAEVPE----IGWCESGEDA-----AMEVLKGSKDGFLTKRLKNY 256
Q ++ A +++ E P I + + +D+ A E ++ FL ++ +Y
Sbjct: 157 QQHGFNQNYLAAIKQSEESPNQASNITFNYAKQDSSKWPLAHEFMQHVLPRFLNDKVIDY 216
Query: 257 PTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPE----AIDTFLEELIVRR 312
DR+ P + SG+SPYL G IS +R + E I T+L ELI R
Sbjct: 217 ARDRDFP-AIKGTSGISPYLTIGAISPKRVLYDLLSYYPHILEDVKAPIFTWLNELI-WR 274
Query: 313 ELADNFCFYQPNYDSL 328
E N PN + L
Sbjct: 275 EFYRNVLLSFPNLNKL 290
>gi|383936686|ref|ZP_09990108.1| deoxyribodipyrimidine photo-lyase [Rheinheimera nanhaiensis E407-8]
gi|383702233|dbj|GAB60199.1| deoxyribodipyrimidine photo-lyase [Rheinheimera nanhaiensis E407-8]
Length = 472
Score = 47.4 bits (111), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 70/301 (23%), Positives = 122/301 (40%), Gaps = 41/301 (13%)
Query: 31 VVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAF----NLFDQFLGAKARQLGFMLRGL 86
V W D R DN L A+D A ++N + F + Q A +Q F+ R +
Sbjct: 5 TVVWFRNDLRTLDNAVLCSAIDHAARHNTALVGLFIATPQTWAQHDMAPIKQ-DFIRRRV 63
Query: 87 RLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFS----PLREIRRCKDKIC 142
+ L+ + I +G + +P + VT F+ LRE +R K+
Sbjct: 64 QALRTEL-TALNIPLLAVEGSSYQQVPALFGQLSQVFQVTVFAQTEYELREQQR-DAKVA 121
Query: 143 NRVS-DSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDY-PMLEQPIEK 200
R+S + + + D ++P S +T +G I K+ + + L Q +
Sbjct: 122 QRLSANKGVLVQFDTQCIMP--------PGSIRTQQGDIYKVFTPFKRSWLARLHQQGVQ 173
Query: 201 WTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAM------EVLKGSKDGFLTKRLK 254
G + ++ + ++PE + G+D++ E++ F +R+
Sbjct: 174 CFGRPKRVNQPPL---------QLPEHSVMQPGDDSSANWPVTEELMLTRLRTFCQQRVA 224
Query: 255 NYPTDRNNPLKPRALSGLSPYLHFGQISAQRCA----LEARKARKLCPEAIDTFLEELIV 310
+Y R+ P S LSPYL G ISA +C LEA+++ + +L ELI
Sbjct: 225 DYQQQRDFP-AVDGTSKLSPYLAIGAISAMQCVARLQLEAKESWAREKSGAEVWLSELIW 283
Query: 311 R 311
R
Sbjct: 284 R 284
>gi|205372682|ref|ZP_03225493.1| deoxyribodipyrimidine photolyase [Bacillus coahuilensis m4-4]
Length = 482
Score = 47.4 bits (111), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 81/323 (25%), Positives = 133/323 (41%), Gaps = 51/323 (15%)
Query: 32 VYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQR 91
+ W+ RD R++D+ L A + V V D+ L R L F+L L +Q
Sbjct: 3 IVWLKRDIRLQDHRPLYEASLRGETLVVYVVEPSIWKDEPLSM--RHLHFILESLEEMQN 60
Query: 92 NIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICNRVSDSVTI 151
+ L +F GE D + SLL T + P R + K+ +
Sbjct: 61 SFNSIGGKLA-VFHGEMIDAL---------SLLYTQYGPFR-LWSHKEYGPKAL------ 103
Query: 152 HEVDAHNVVPVWVASEKL---EYSAKTLRGK---INKLLPEY--LIDYPMLEQPIEKWTG 203
++ + +V W+ L EY A + K I + E+ +D P+L +PI
Sbjct: 104 --LERNKIVKDWMEKNGLHWTEYQATAISQKSSSIKQFKKEWQVFMDEPVLPKPIRIQAP 161
Query: 204 TRQSIDWDSIIAAVLRKGAEV---PEIGWCESGEDAAMEVLKGSKDGFLTKRLKNYPTDR 260
+ + +A +K + P + GE A + L+ FL +R +Y T++
Sbjct: 162 DKLPSSFIKDLAGYKKKSQGIKGEPIRFGQQGGELLAWDTLQT----FLDERFVHYETNQ 217
Query: 261 NNPLKPRALSG--LSPYLHFGQISA----QRCALEARKARKLCPEAIDTFLEELIVR--- 311
NPL ++SG LSPYL FG IS+ Q +K E +D FL ++ R
Sbjct: 218 MNPLA-SSISGSRLSPYLAFGNISSRDVYQTVLSSKQKGESHSLEQLDLFLSRILRRDFL 276
Query: 312 -RELADNFCFYQ----PNYDSLK 329
+ L +N +Q P +D ++
Sbjct: 277 HQRLIENPTLHQYSLHPLFDGVR 299
>gi|423551107|ref|ZP_17527434.1| hypothetical protein IGW_01738 [Bacillus cereus ISP3191]
gi|401188440|gb|EJQ95508.1| hypothetical protein IGW_01738 [Bacillus cereus ISP3191]
Length = 476
Score = 47.4 bits (111), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 69/302 (22%), Positives = 125/302 (41%), Gaps = 38/302 (12%)
Query: 37 RDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQRNIEET 96
+D R+ DN AL A +PV V F +G+ ++ ++ + ++R +E
Sbjct: 11 KDFRLYDNPALFEAAQSGEV--LPVYVHDETFS--IGSASK--WWLHHTIIDVKRQLEAL 64
Query: 97 FQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICNRVSD-SVTIHEVD 155
L + +G + I + + + G + + + E + K+ + D +T E +
Sbjct: 65 GSTLI-IRKGNTMEEILSLIEQLGITAVYWNICYDPERLQFNQKMKMMLEDKGITCKEFN 123
Query: 156 AHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQPIEKWTGTRQSIDWDSIIA 215
+H ++ W+ +K K N + ++ +PI K QSI W S +
Sbjct: 124 SHLLLEPWIIKKKDNTEYKVFTPFYNAFQKQ------VISKPISK----VQSIKWGSSLP 173
Query: 216 AVLRKGAE--VPEIGWC-------ESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKP 266
A L +P I W E E+ A + K F + +L +Y R+ P
Sbjct: 174 ASLSVSELHLLPTILWTSHMESIWEPTEEGAYKTFKK----FFSSKLVSYSEGRDFP-NQ 228
Query: 267 RALSGLSPYLHFGQISAQRC--ALEARKARKLCP---EAIDTFLEELIVRRELADNFCFY 321
A S L+PYL FGQIS + L + K C + +++F+ + I RE + ++
Sbjct: 229 NAHSMLAPYLSFGQISVKLIYHYLINKSNEKQCSLFEQQVNSFIRQFI-WREFSYYLLYH 287
Query: 322 QP 323
P
Sbjct: 288 YP 289
>gi|328544427|ref|YP_004304536.1| deoxyribodipyrimidine photolyase family protein [Polymorphum gilvum
SL003B-26A1]
gi|326414169|gb|ADZ71232.1| Deoxyribodipyrimidine photolyase family [Polymorphum gilvum
SL003B-26A1]
Length = 480
Score = 47.0 bits (110), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 89/336 (26%), Positives = 128/336 (38%), Gaps = 43/336 (12%)
Query: 31 VVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQ 90
+ W +D R+ DN AL A A + +PV V D+ G LG R L
Sbjct: 3 TLVWFRQDLRIADNPALFEAA--ARGSVLPVFV----LDEGPGDNTHPLGAASR--WWLH 54
Query: 91 RNIEETFQIL--FFLFQGEAEDNIPNFVRECGASLLVTD--FSPLREIRRCKDKICNRVS 146
++E + L L G+ + IP R G + + + P +RR ++
Sbjct: 55 HSLEALARDLGRLVLLHGDPQRLIPELARAAGVGAVHWNRCYEP-HAVRRDTALKAALIA 113
Query: 147 DSVTIHEVDAHNVVPVWVASEKLEYSAKTL----RGKINKLLPEYLIDYPMLEQPIEKWT 202
V + +A + W K K R + + + L P LE +
Sbjct: 114 AGVEVRSFNAALLNEPWELETKTGGPFKVFSPYWRAALARPVATPLPRPPRLEIAAGQ-A 172
Query: 203 GTRQSIDWDSIIAAVLRKGAEVPEIGW---CESGEDAAMEVLKGSKDGFLTKRLKNYPTD 259
G R DW LR A GW GE A E L + FL L Y T
Sbjct: 173 GDRLD-DWR------LRPTAPDWAAGWRDLWHPGEAGAAERL----EHFLEAGLDGYATL 221
Query: 260 RNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCP---EAIDTFLEELIVRRELAD 316
R+ P +S LSP+LHFG++S ++ R A P D FL E I RE +
Sbjct: 222 RDRP-DLSHVSRLSPHLHFGEVSPRQVVARTRFAAGRTPGLERDADKFLAE-IGWREFSH 279
Query: 317 NFCFYQP-----NYDSLKGAWEWARKSLKDHASDKR 347
+ ++ P N+ S A+ W R S D A +R
Sbjct: 280 HLLYHFPRLPERNWKSTFDAYPW-RDSSGDLAVWQR 314
>gi|209549047|ref|YP_002280964.1| deoxyribodipyrimidine photo-lyase [Rhizobium leguminosarum bv.
trifolii WSM2304]
gi|209534803|gb|ACI54738.1| Deoxyribodipyrimidine photo-lyase [Rhizobium leguminosarum bv.
trifolii WSM2304]
Length = 483
Score = 47.0 bits (110), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 75/316 (23%), Positives = 113/316 (35%), Gaps = 41/316 (12%)
Query: 30 PVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLL 89
PV+ W RD R+ DN AL +A + + +PV + A Q ++ L L
Sbjct: 8 PVILWFRRDLRLDDNQAL-NAAHLSGRPIIPVYINEPAAAGTGPLGAAQAWWLHHSLEAL 66
Query: 90 QRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTD--FSPLR--------------- 132
R++ E Q L G+A + + +++ GA + + + P
Sbjct: 67 DRSLHER-QGELVLASGDALEVLRAVIKKSGAEAVFWNRRYDPSGISVDTHIKQELEKQA 125
Query: 133 -EIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDY 191
E R ++ + S +T + P W A E + L L
Sbjct: 126 IEARSFGGQLLHEPSRLMTGNGTPYRVYTPFWRALEGAGEAEPPLEAPAKLRLAS---QR 182
Query: 192 PMLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTK 251
P E ++ W DW A + W GE A E L F+
Sbjct: 183 PASET-LKSWKLLPTKPDWAKGFADL-----------WT-PGEQGARERLSA----FVED 225
Query: 252 RLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVR 311
LK Y +R+ P KP A S LSP+L G+IS R R P A + I
Sbjct: 226 ELKGYKENRDYPAKP-ATSMLSPHLALGEISPARIWDATRGLSNRVPAADIVHFRKEIAW 284
Query: 312 RELADNFCFYQPNYDS 327
RE + + F+ P S
Sbjct: 285 REFSYHLLFHFPRLAS 300
>gi|83718773|ref|YP_442347.1| deoxyribodipyrimidine photolyase [Burkholderia thailandensis E264]
gi|257138547|ref|ZP_05586809.1| deoxyribodipyrimidine photolyase [Burkholderia thailandensis E264]
gi|83652598|gb|ABC36661.1| deoxyribodipyrimidine photolyase [Burkholderia thailandensis E264]
Length = 486
Score = 47.0 bits (110), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 47/93 (50%), Gaps = 13/93 (13%)
Query: 233 GEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQ---RCALE 289
GEDAA +L+ F+ RL Y T+R+ P + S LSPY+ FG +S + + A++
Sbjct: 215 GEDAAHSLLRA----FVDSRLGGYATERDRP-GIASTSRLSPYVRFGNLSVRQIWQAAVD 269
Query: 290 ARKARKLCPEAIDTFLEELIVRRELADNFCFYQ 322
A R +D FL EL R FC+ Q
Sbjct: 270 AHAHRAATQADLDKFLSELGWR-----EFCWAQ 297
>gi|38232742|ref|NP_938509.1| riboflavin biosynthesis protein [Corynebacterium diphtheriae NCTC
13129]
gi|38199000|emb|CAE48617.1| Putative riboflavin biosynthesis protein [Corynebacterium
diphtheriae]
Length = 446
Score = 47.0 bits (110), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 74/278 (26%), Positives = 106/278 (38%), Gaps = 56/278 (20%)
Query: 31 VVYWMFRDQRVRDNWALIHAVDQANKNNV---PVAVAFNLFDQFLGAKAR---QLGFMLR 84
VV W D RV DN AL+ A + N V +A + + LG + +
Sbjct: 5 VVVWFRDDLRVHDNPALMKAWELVRANPADLHAVYIANEVGVRPLGGAVKWWLHHSLLAL 64
Query: 85 GLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICNR 144
+L QR + + G+ +P V CGA+ + + R D
Sbjct: 65 SEQLAQRGVR------LHVLSGDPLTLLPQLVTSCGATAVT--------MNRRYDPAARS 110
Query: 145 VSDSVTIHEVDAHNV----VPVWVASEKLEYSAKT-------------LRGKINKLLPEY 187
+ D+ + + AH+V P + +E E + T LR I L +
Sbjct: 111 IDDAF-VADASAHDVEVYDFPCHLLAEPGEITTTTGGSYKVFTPFSRNLRDAIGDLPLDT 169
Query: 188 LIDYPMLEQPIEKWTGTRQSI---DWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGS 244
L P EQPI+ T T+ +I WD+ AA + K W GE AA E L
Sbjct: 170 LAAPPKAEQPIDD-TETQAAIADLGWDAWWAASISK-------AWT-PGEPAAREALAE- 219
Query: 245 KDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQIS 282
L L Y DR+ P S LSP L FG++S
Sbjct: 220 ----LDDILPRYLDDRDRP-DIDGTSRLSPRLRFGELS 252
>gi|404252236|ref|ZP_10956204.1| DNA photolyase FAD-binding protein [Sphingomonas sp. PAMC 26621]
Length = 535
Score = 47.0 bits (110), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 87/383 (22%), Positives = 141/383 (36%), Gaps = 64/383 (16%)
Query: 12 QPGRIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQF 71
Q R+R L + V+ W+ + R DN + A+ N +PV V + + +
Sbjct: 15 QAPRVRALNDKVPAQNGRYVLCWLQQALRASDNPVIDAAIRFGNALRLPVLVYHGVREDY 74
Query: 72 LGAKARQLGFML------------RGLRLLQR--NIEETFQILFFLFQGEAEDNIPNFVR 117
A R F+L RGL +Q + L + GEA
Sbjct: 75 PYASDRLHHFILGASIDLAEGCRQRGLACVQHVDRAGRREKGLVYRLGGEA--------- 125
Query: 118 ECGASLLVTDFSPLREIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLR 177
+ +V + P R +++ RV V + V+A +VP V ++ LR
Sbjct: 126 ----AAIVLEDQPTFVARWQSERVAARVD--VPVFAVNAACLVPPAVICPDVQGRTAFLR 179
Query: 178 -------------GKINKLLPEYLIDYPMLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEV 224
+I + P Y P +T + +D + A L +
Sbjct: 180 RHEPARAVWAAWDAEIADIAP-YAGALP--------FTPDKLRVDELGTLIAGLDIDHSL 230
Query: 225 PEIGWCESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQ 284
P + +G AA E L + L Y + RN+ + SGLSPYLHFG +
Sbjct: 231 PVVPMHPAGRRAAEERLAR----LVADVLPGYASTRNDATRADGASGLSPYLHFG-VLGP 285
Query: 285 RCALEARKARKLCPEAIDTFLEELIVRRELADNFCFYQPNYDSLKGAWE----WARKSLK 340
R + A + F +E++ RE + YQ + + ++ WAR++L
Sbjct: 286 REVMAAVNGSAAGGQHKRKFADEVLGWRE----WFHYQARHLAAPERYDRIAPWARQTLI 341
Query: 341 DHASDKREHIYTKEQFEKAQTAD 363
DHA D R T + +T D
Sbjct: 342 DHAGDLRPDQETLTALLRGETRD 364
>gi|376289283|ref|YP_005161530.1| putative riboflavin biosynthesis
diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Corynebacterium diphtheriae C7 (beta)]
gi|372102679|gb|AEX66276.1| putative riboflavin biosynthesis protein [Corynebacterium
diphtheriae C7 (beta)]
Length = 446
Score = 47.0 bits (110), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 74/278 (26%), Positives = 106/278 (38%), Gaps = 56/278 (20%)
Query: 31 VVYWMFRDQRVRDNWALIHAVDQANKNNV---PVAVAFNLFDQFLGAKAR---QLGFMLR 84
VV W D RV DN AL+ A + N V +A + + LG + +
Sbjct: 5 VVVWFRDDLRVHDNPALMKAWELVRANPADLHAVYIANEVGVRPLGGAVKWWLHHSLLAL 64
Query: 85 GLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICNR 144
+L QR + + G+ +P V CGA+ + + R D
Sbjct: 65 SEQLAQRGVR------LHVLSGDPLTLLPQLVTSCGATAVT--------MNRRYDPAARS 110
Query: 145 VSDSVTIHEVDAHNV----VPVWVASEKLEYSAKT-------------LRGKINKLLPEY 187
+ D+ + + AH+V P + +E E + T LR I L +
Sbjct: 111 IDDAF-VADASAHDVEVYDFPCHLLAEPGEITTTTGGSYKVFTPFSRNLRDAIGDLPLDT 169
Query: 188 LIDYPMLEQPIEKWTGTRQSI---DWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGS 244
L P EQPI+ T T+ +I WD+ AA + K W GE AA E L
Sbjct: 170 LAAPPKAEQPIDD-TETQAAIADLGWDAWWAASISK-------AWT-PGEPAAREALAE- 219
Query: 245 KDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQIS 282
L L Y DR+ P S LSP L FG++S
Sbjct: 220 ----LDDILPRYLDDRDRP-DIDGTSRLSPRLRFGELS 252
>gi|206974530|ref|ZP_03235446.1| deoxyribodipyrimidine photolyase family protein [Bacillus cereus
H3081.97]
gi|206747173|gb|EDZ58564.1| deoxyribodipyrimidine photolyase family protein [Bacillus cereus
H3081.97]
Length = 476
Score = 47.0 bits (110), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 65/301 (21%), Positives = 122/301 (40%), Gaps = 31/301 (10%)
Query: 35 MF-RDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQRNI 93
MF +D R+ DN AL A + ++D+ + ++ + ++R +
Sbjct: 8 MFQKDFRLYDNPALFEAAQSGE------VLPLYVYDETFSIGSASKWWLHHTIIDVKRQL 61
Query: 94 EETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICNRVSD-SVTIH 152
E L + +G + I + + + G + + + + + K+ + D +T
Sbjct: 62 EALGSTLI-IRKGNTMEEILSLIEQLGITAVYWNICYDPDRLQSNQKMKMMLEDKGITCK 120
Query: 153 EVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQPIEKWTGTRQSIDWDS 212
E ++H ++ W+ +K K N + ++ +PI K QSI W S
Sbjct: 121 EFNSHLLLEPWIIKKKDNTEYKVFTPFYNAFQKQ------VISKPISK----VQSIKWGS 170
Query: 213 IIAAVLRKGAE--VPEIGWCESGEDAAMEVLKGSKDG---FLTKRLKNYPTDRNNPLKPR 267
+ A L +P I W E +G+ F + +L +Y R+ P
Sbjct: 171 SLPASLSVSELHLLPTIPWTSHMESIWEPTEEGAYKTCKKFFSSKLVSYSEGRDFP-NQN 229
Query: 268 ALSGLSPYLHFGQISAQRC--ALEARKARKLCP---EAIDTFLEELIVRRELADNFCFYQ 322
A S L+PYL FGQIS + L + K C + +++F+ +LI RE + ++
Sbjct: 230 AHSMLAPYLSFGQISVKLMYHYLINKSNEKQCSLFEKQVNSFIRQLI-WREFSYYLLYHY 288
Query: 323 P 323
P
Sbjct: 289 P 289
>gi|56696791|ref|YP_167152.1| deoxyribodipyrimidine photolyase [Ruegeria pomeroyi DSS-3]
gi|56678528|gb|AAV95194.1| deoxyribodipyrimidine photolyase [Ruegeria pomeroyi DSS-3]
Length = 481
Score = 46.6 bits (109), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 76/323 (23%), Positives = 123/323 (38%), Gaps = 48/323 (14%)
Query: 31 VVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQ 90
++YW+ RD R+ D+ L A + + VPV + A A +LG GL
Sbjct: 7 IIYWLRRDLRLADHPGLA-AAAASGRPVVPVFIHDESVAALGAAPAFRLGL---GLERFG 62
Query: 91 RNIEETFQILFFLFQGEAEDNIPNFVRECGASLL--VTDFSPLREIRRCKDKICNRVSD- 147
+ + L L +G A + + E GA + +++P R K + +
Sbjct: 63 ATLGDMGSRLI-LRRGSAPAVLQALIAETGAGAVWWTREYTPQAITRDSALKTALQQAGI 121
Query: 148 --------------SVTIHEVDAHNV-VPVWVASEKLEYSAKTLRGKINKLLPEYLIDYP 192
+V + V P W A + E SA P
Sbjct: 122 EARSFGGALLFEPWTVETGAGGFYKVYTPFWRAVSQREVSAPD--------------PAP 167
Query: 193 MLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKR 252
+P E W G+ DW + A +R+GA V GE AA+E L D F+
Sbjct: 168 ARVRPPEAWPGSEALSDWG--LGAPMRRGAAVVATH-QAPGEAAALERL----DRFIATG 220
Query: 253 LKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVRR 312
+ Y R+ P S LS L G+I + A +A + +TFL++L V R
Sbjct: 221 IGQYDACRDLPAG-DGTSTLSDALSLGEIGPRTLWHRAGEAAHKGAQGAETFLKQL-VWR 278
Query: 313 ELADNFCFYQPNY--DSLKGAWE 333
+ A + ++ P+ ++ + WE
Sbjct: 279 DFAYHLMYHTPHLLSENWRPGWE 301
>gi|423605178|ref|ZP_17581071.1| hypothetical protein IIK_01759 [Bacillus cereus VD102]
gi|401244326|gb|EJR50690.1| hypothetical protein IIK_01759 [Bacillus cereus VD102]
Length = 476
Score = 46.6 bits (109), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 68/304 (22%), Positives = 122/304 (40%), Gaps = 42/304 (13%)
Query: 37 RDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQRNIEET 96
+D R+ DN AL A + ++D+ + ++ + ++R +E
Sbjct: 11 KDFRLYDNPALFEAAQSGE------VLPLYVYDETFSIGSASKWWLHHTIIDVKRQLEAL 64
Query: 97 FQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICNRVSD-SVTIHEVD 155
L + +G + I + + + G + + + E + K+ + D +T E +
Sbjct: 65 GSTLI-IRKGNTMEEILSLIEQLGITAVYWNICYDPERLQFNQKMKMMLEDKGITCKEFN 123
Query: 156 AHNVVPVWVASEK--LEYSAKTLRGKINKLLPEYLIDYPMLEQPIEKWTGTRQSIDWDSI 213
+H ++ W+ +K EY T P Y + +Q I K QSI W S
Sbjct: 124 SHLLLEPWIIKKKDNTEYKVFT---------PFY---HAFQKQVISKPISKVQSIKWGSS 171
Query: 214 IAAVLRKGAE--VPEIGWC-------ESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPL 264
+ A L +P I W E E+ A + K F + +L +Y R+ P
Sbjct: 172 LPASLSVSELHLLPTIPWTSHMESIWEPTEEGAYKTFKK----FFSSKLVSYSEGRDFP- 226
Query: 265 KPRALSGLSPYLHFGQISAQRC--ALEARKARKLCP---EAIDTFLEELIVRRELADNFC 319
A S L+PYL FGQIS + L + K C + +++F+ + I RE +
Sbjct: 227 NQNAHSMLAPYLSFGQISVKLIYHYLINKSNEKQCSLFEQQVNSFIRQFI-WREFSYYLL 285
Query: 320 FYQP 323
++ P
Sbjct: 286 YHYP 289
>gi|148358421|ref|YP_001249628.1| deoxyribodipyrimidine photolyase [Legionella pneumophila str.
Corby]
gi|148280194|gb|ABQ54282.1| deoxyribodipyrimidine photolyase [Legionella pneumophila str.
Corby]
Length = 471
Score = 46.6 bits (109), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 38/109 (34%), Positives = 52/109 (47%), Gaps = 8/109 (7%)
Query: 224 VPEIGWCESGEDAAMEVLKGSK---DGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQ 280
+P I W + KG++ D F+ L Y DR+ P K A S LSP+LHFG+
Sbjct: 184 LPAINWAARFSEYWTPGEKGAQKKLDEFIIHHLSGYKRDRDFPAK-NATSRLSPHLHFGE 242
Query: 281 ISAQRC--ALEARKARKLCPEA-IDTFLEELIVRRELADNFCFYQPNYD 326
IS ALE K + C A ++ FL EL RE + ++ P D
Sbjct: 243 ISPWVILRALELTKLEQTCDLASVEHFLSEL-GWREFSVYLLYHFPKLD 290
>gi|163756034|ref|ZP_02163150.1| deoxyribodipyrimidine photolyase-class I [Kordia algicida OT-1]
gi|161323908|gb|EDP95241.1| deoxyribodipyrimidine photolyase-class I [Kordia algicida OT-1]
Length = 433
Score = 46.6 bits (109), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 70/302 (23%), Positives = 127/302 (42%), Gaps = 59/302 (19%)
Query: 27 KRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGL 86
K V++W RD R+ DN L HA++ K + +FD
Sbjct: 2 KDNYVLFWHRRDLRIEDNIGLYHALNSGKK-----VIPLFIFDS---------------- 40
Query: 87 RLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICNRVS 146
+L++ ++ ++ F E + I ++ AS+LV PL + K + +S
Sbjct: 41 DILEKLPKDDARVTFIY---EELEKINTTLQSHDASILVKHGKPLEVLEEIIGK--HEIS 95
Query: 147 DSVTIHEVDAHNV-----VPVWVASEKLEYSAKTLRGKI----NKLLPE----YLIDYPM 193
T H+ + + + V +AS+ +E+ KT + ++ N+++ Y+I P
Sbjct: 96 AVYTNHDYEPYAIARDKEVGELLASKNIEF--KTYKDQVIFERNEVVKADGDPYIIYTPY 153
Query: 194 LEQPIEKWT-GTRQSIDWDSIIAAVLRKGAEVP---EIGWCESGEDAAMEVLKGSKDGFL 249
++ ++K T S+D S +K P +IG+ S +++VL +
Sbjct: 154 SKKWLDKLTKNDYTSVDCASYYKNYAKKSFNFPSLKDIGFTAS----SIKVLPYT---MA 206
Query: 250 TKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELI 309
+ NY RN P S LSP+L FG IS ++C ++ + FL+EL+
Sbjct: 207 ENMIDNYEDTRNFP-AIEGTSRLSPHLRFGTISVRKCVQNGLQSEN------NVFLKELV 259
Query: 310 VR 311
R
Sbjct: 260 WR 261
>gi|376241775|ref|YP_005132627.1| putative riboflavin biosynthesis
diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Corynebacterium diphtheriae CDCE 8392]
gi|372105017|gb|AEX71079.1| putative riboflavin biosynthesis protein [Corynebacterium
diphtheriae CDCE 8392]
Length = 446
Score = 46.6 bits (109), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 73/278 (26%), Positives = 105/278 (37%), Gaps = 56/278 (20%)
Query: 31 VVYWMFRDQRVRDNWALIHAVDQANKNNV---PVAVAFNLFDQFLGAKAR---QLGFMLR 84
VV W D RV DN AL+ A + N V +A + + LG + +
Sbjct: 5 VVVWFRDDLRVHDNPALMKAWELVRANPADLHAVYIANEVGVRPLGGAVKWWLHHSLLAL 64
Query: 85 GLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICNR 144
+L QR + + G+ +P V CGA+ + + R D
Sbjct: 65 SEQLAQRGVR------LHVLSGDPLTLLPQLVTSCGATAVT--------MNRRYDPAARS 110
Query: 145 VSDSVTIHEVDAHNV----VPVWVASEKLEYSAKT-------------LRGKINKLLPEY 187
+ D+ + + AH+V P + +E E + T LR I L +
Sbjct: 111 IDDAF-VADASAHDVEVYDFPCHLLAEPGEITTTTGGSYKVFTPFSRNLRDAIGDLPLDT 169
Query: 188 LIDYPMLEQPIEKWTGTRQSI---DWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGS 244
L P EQPI+ T T+ +I WD+ AA + K GE AA E L
Sbjct: 170 LAAPPKAEQPIDD-TETQAAIAQLGWDAWWAASISKA--------WTPGEPAAREALAE- 219
Query: 245 KDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQIS 282
L L Y DR+ P S LSP L FG++S
Sbjct: 220 ----LDDILPRYLDDRDRP-DIDGTSRLSPRLRFGELS 252
>gi|167581248|ref|ZP_02374122.1| deoxyribodipyrimidine photolyase [Burkholderia thailandensis TXDOH]
Length = 311
Score = 46.6 bits (109), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 47/93 (50%), Gaps = 13/93 (13%)
Query: 233 GEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQR---CALE 289
GEDAA +L+ F+ RL Y T+R+ P + S LSPY+ FG +S ++ A++
Sbjct: 40 GEDAAHSLLRA----FVDSRLGGYATERDRP-GIASTSRLSPYVRFGNLSVRQIWHAAVD 94
Query: 290 ARKARKLCPEAIDTFLEELIVRRELADNFCFYQ 322
A R +D FL EL R FC+ Q
Sbjct: 95 AHAHRAATQADLDKFLSELGWR-----EFCWAQ 122
>gi|407785596|ref|ZP_11132743.1| deoxyribodipyrimidine photo-lyase [Celeribacter baekdonensis B30]
gi|407202546|gb|EKE72536.1| deoxyribodipyrimidine photo-lyase [Celeribacter baekdonensis B30]
Length = 465
Score = 46.6 bits (109), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 44/153 (28%), Positives = 73/153 (47%), Gaps = 20/153 (13%)
Query: 175 TLRGK-INKLLPEYLIDYPMLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEV--PEIGWCE 231
T+R + + LLP + +P + W + +DW + +++GA V P C
Sbjct: 149 TVRARSVADLLPAPDVIWP------QDWPKSEALVDWQ--MGGKMQRGAAVVLPH---CH 197
Query: 232 SGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEAR 291
GE AA+ L D F+ + ++ Y R+ P +P SGLS L +G+IS +R
Sbjct: 198 IGEAAALARL----DAFIERHVEAYKAKRDFPAEP-VCSGLSENLTYGEISPRRIWHAGW 252
Query: 292 KARKLCPEAIDTFLEELIVRRELADNFCFYQPN 324
A + + FL+EL V RE A + + +P+
Sbjct: 253 HAMEAGAAGAEHFLKEL-VWREFAYHLLYREPD 284
>gi|167619333|ref|ZP_02387964.1| deoxyribodipyrimidine photolyase [Burkholderia thailandensis Bt4]
Length = 311
Score = 46.6 bits (109), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 47/93 (50%), Gaps = 13/93 (13%)
Query: 233 GEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQ---RCALE 289
GEDAA +L+ F+ RL Y T+R+ P + S LSPY+ FG +S + + A++
Sbjct: 40 GEDAAHSLLRA----FVDSRLGGYATERDRP-GIASTSRLSPYVRFGNLSVRQIWQAAVD 94
Query: 290 ARKARKLCPEAIDTFLEELIVRRELADNFCFYQ 322
A R +D FL EL R FC+ Q
Sbjct: 95 AHAHRAATQADLDKFLSELGWR-----EFCWAQ 122
>gi|375289840|ref|YP_005124380.1| putative riboflavin biosynthesis protein [Corynebacterium
diphtheriae 241]
gi|376244673|ref|YP_005134912.1| putative riboflavin biosynthesis
diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Corynebacterium diphtheriae HC01]
gi|371579511|gb|AEX43178.1| putative riboflavin biosynthesis protein [Corynebacterium
diphtheriae 241]
gi|372107303|gb|AEX73364.1| putative riboflavin biosynthesis protein [Corynebacterium
diphtheriae HC01]
Length = 446
Score = 46.6 bits (109), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 73/279 (26%), Positives = 104/279 (37%), Gaps = 56/279 (20%)
Query: 30 PVVYWMFRDQRVRDNWALIHAVDQANKNNV---PVAVAFNLFDQFLGAKAR---QLGFML 83
PVV W D RV DN AL+ A + N V +A + + LG + +
Sbjct: 4 PVVVWFRDDLRVHDNPALMKAWELVRANPADLHAVYIANEVGVRPLGGAVKWWLHHSLLA 63
Query: 84 RGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICN 143
+L QR + + G+ +P V CGA+ + + R D
Sbjct: 64 LSEQLAQRGVR------LHVLSGDPLTLLPQLVTSCGATAVT--------MNRRYDPAAR 109
Query: 144 RVSDSVTIHEVDAHNV----VPVWVASEKLEYSAKT-------------LRGKINKLLPE 186
+ D+ + + AH V P + +E E + T LR I L +
Sbjct: 110 SIDDAF-VADASAHGVEVYDFPCHLLAEPGEITTTTGGSYKVFTPFSRNLRDAIGDLPLD 168
Query: 187 YLIDYPMLEQPIEKWTGTRQSI---DWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKG 243
L P QPI+ T T+ +I WD+ AA + K GE AA E L
Sbjct: 169 TLAAPPKSAQPIDD-TETQAAIADLGWDAWWAASISKA--------WTPGEPAAREALAE 219
Query: 244 SKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQIS 282
L L Y DR+ P S LSP L FG++S
Sbjct: 220 -----LDDILPRYLEDRDRP-DIDGTSRLSPRLRFGELS 252
>gi|372281898|ref|ZP_09517934.1| deoxyribodipyrimidine photo-lyase [Oceanicola sp. S124]
Length = 472
Score = 46.6 bits (109), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 73/308 (23%), Positives = 117/308 (37%), Gaps = 36/308 (11%)
Query: 30 PVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLL 89
P + W+ RD R D+ AL A K PV F D G A + GL
Sbjct: 4 PCLLWIRRDLRTTDHEALAAAC----KRGGPVIPVFIRDDSVTGLGAAPALRLDLGLAAF 59
Query: 90 QRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTD--FSPLREIRRCKDKICNRVSD 147
++E L L G + + + +E GA + + P R + K R D
Sbjct: 60 AARLKEKGSRLI-LRSGNPLEVLRDLAKETGAGAVYWQRLYDPAAIKRDSRVKTALR-ED 117
Query: 148 SVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDY------PMLEQPIE-- 199
+ H + W + +T +G K+ + P L P +
Sbjct: 118 GLDAESFAGHLLFEPW--------TVETGQGGFYKVYSPFWKAVRGRDVGPALSAPSDIP 169
Query: 200 ---KWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLKNY 256
W + DW ++A +R+G V GE AA + L F R+ +Y
Sbjct: 170 APDAWPDSEALADWQ--LSAPMRRGRAVVAAH-VTPGEQAAQQQLAL----FARDRIADY 222
Query: 257 PTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVRRELAD 316
R+ P + S LS +L G+IS ++C +A + +TFL+E +V RE A
Sbjct: 223 KDQRDFPDR-EGTSDLSHHLTVGEISPRQCWHAGWRALEEGKPGAETFLKE-VVWREFAY 280
Query: 317 NFCFYQPN 324
+ ++ P+
Sbjct: 281 HLMYHSPH 288
>gi|77362362|ref|YP_341936.1| deoxyribodipyrimidine photolyase [Pseudoalteromonas haloplanktis
TAC125]
gi|76877273|emb|CAI89490.1| putative deoxyribodipyrimidine photolyase [Pseudoalteromonas
haloplanktis TAC125]
Length = 468
Score = 46.6 bits (109), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 63/271 (23%), Positives = 114/271 (42%), Gaps = 26/271 (9%)
Query: 31 VVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKAR--QLGFMLRGLRL 88
++W RD R+ N ALI A++ N A+ F Q+ +A Q+ + R +
Sbjct: 3 TLFWFRRDLRLFSNEALIQALN----NGANHAIFFICEKQWQQHQAAPIQIDLLKRRITY 58
Query: 89 LQRNIEE---TFQILFFLFQGEAEDNIPNFVRECGASLLVTDFS-PLREIRRCKDKI--C 142
L + + + T I+ + + E + +F + ++ + L E+ R K + C
Sbjct: 59 LHQQLADHGITLHIIDAPYFADCETQLIDFCKANNVKHVIANTEYELNEVNRDKAILAKC 118
Query: 143 NRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYL-IDYPMLEQPIEKW 201
+ +S + T++E D + PV + K L +Y+ + + + + P+E
Sbjct: 119 DELSITFTLYEGDL--IAPVGSVKNQSNEMYKVFTPFKRAWLKQYIEVHFSLPQWPVEHV 176
Query: 202 TGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLKNYPTDRN 261
+G Q S L KG E W + A V D F+ +L +Y R+
Sbjct: 177 SGGAQL----SKNETNLLKGDSSSE-KWPVDDKTLATVV-----DNFICDKLTSYDDHRD 226
Query: 262 NPLKPRALSGLSPYLHFGQISAQRCALEARK 292
P + SGLSPYL G IS ++ + ++
Sbjct: 227 IP-SIKGTSGLSPYLALGIISTKQLLINIQQ 256
>gi|114769238|ref|ZP_01446864.1| DNA photolyase, Cryptochrome 1 apoprotein (Blue light
photoreceptor) [Rhodobacterales bacterium HTCC2255]
gi|114550155|gb|EAU53036.1| DNA photolyase, Cryptochrome 1 apoprotein (Blue light
photoreceptor) [Rhodobacterales bacterium HTCC2255]
Length = 465
Score = 46.2 bits (108), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 71/324 (21%), Positives = 124/324 (38%), Gaps = 50/324 (15%)
Query: 28 RGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLR 87
+ P++ W RD R D+ AL A + + +P+ + +F+ A +LG +
Sbjct: 4 QAPIIIWFRRDFRFSDHEAL-SAAHSSGRPIIPIFIFDEVFEALGAAPKWRLGL---AIE 59
Query: 88 LLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICNRVSD 147
++ +E L L +G A + + V E GA D +R D
Sbjct: 60 CFKKKLERMGSNLI-LRRGNACEILQELVNETGAL----------------DVYWSRAYD 102
Query: 148 SVTIH------------EVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPM-- 193
V+IH H + WV K + K + + ++ +
Sbjct: 103 PVSIHRDTKVKSLLNGTSFKGHVLFEPWVPKTKSGENFKVYTPFWRHVSSQLTVNSTLSK 162
Query: 194 ---LEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLT 250
L P W + +W + + +G V + GE+ A+ L + F+
Sbjct: 163 ISKLHSP-HVWPKSDLLSNWG--LGEEMNRGRNVVS-KYINVGEEVALNKL----ENFIV 214
Query: 251 KRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIV 310
++ Y DR+ P++ A SGLS L +G+IS + R + FL+EL V
Sbjct: 215 SKVNGYKIDRDFPMR-HATSGLSENLTYGEISPRLIFNSLRNTFDKNDLGAEHFLKEL-V 272
Query: 311 RRELADNFCFYQPNYDS--LKGAW 332
RE A + ++ P D+ +G W
Sbjct: 273 WREFAYHLLWHFPKLDTQCWRGEW 296
>gi|330817717|ref|YP_004361422.1| Deoxyribodipyrimidine photolyase [Burkholderia gladioli BSR3]
gi|327370110|gb|AEA61466.1| Deoxyribodipyrimidine photolyase [Burkholderia gladioli BSR3]
Length = 487
Score = 46.2 bits (108), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 51/94 (54%), Gaps = 8/94 (8%)
Query: 234 EDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKA 293
E+AA+E+L + FL K+++ Y R+ P +P A S LSPYL FGQ+SA++ A A
Sbjct: 215 EEAALELL----ERFLDKKIRGYGEARDRPDRP-ATSRLSPYLRFGQLSARQVWHAAMAA 269
Query: 294 RKLCPEAIDTFLEELIVR---RELADNFCFYQPN 324
+ A+ +E+ + RE + ++ P
Sbjct: 270 AREGGAAVAADIEKFVSELGWREFDTSLLYHFPE 303
>gi|342877946|gb|EGU79364.1| hypothetical protein FOXB_10147 [Fusarium oxysporum Fo5176]
Length = 589
Score = 46.2 bits (108), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 80/316 (25%), Positives = 134/316 (42%), Gaps = 38/316 (12%)
Query: 23 SLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKAR---QL 79
S+D K+ VV+W D R+ DN AL A D+A + VP+ + + Q A R ++
Sbjct: 90 SIDVKKA-VVHWFKMDLRLSDNRALALASDKAKEAGVPLIAMYIISPQDYEAHLRSPVRV 148
Query: 80 GFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPN----FVRECGASLLVTDFS-PLREI 134
FMLR L +++ ++ + I ++ E +P+ + E GAS + + + E+
Sbjct: 149 DFMLRTLEVIKHDLAK-LDIPLYVETVEKRKRVPDRILELMDEWGASHVYANMEYEVDEL 207
Query: 135 RRCKDKICNRVSDSVTIHEVDAHNVVP---VWVASEKLEYSAKT--LRGKINKLLPEYLI 189
RR I + + V VVP + + K +Y+ T R + + +
Sbjct: 208 RREASMIRDFAENGKAFEVVHDTCVVPPGELHTGAGK-QYAVYTPWYRSWVAHIHEN--L 264
Query: 190 DYPMLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCES---------GEDAAMEV 240
D L +P EK + + D+ + + + + E GE A +
Sbjct: 265 DLLELYEPPEKNPSSARK-DFAKLFDVEIPDAPKSKRLDGEEKERLRSLWPCGEHEAKKR 323
Query: 241 LKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEAR---KARKL- 296
L D F + + NY RN P + S +S +L G ISA+ C AR K +KL
Sbjct: 324 L----DKFCEEMIGNYQKKRNIPTEA-GTSSISVHLASGTISARTCVRTARDRNKTKKLN 378
Query: 297 -CPEAIDTFLEELIVR 311
E I T++ E+ R
Sbjct: 379 GGNEGIQTWISEVAWR 394
>gi|75763261|ref|ZP_00743014.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar
israelensis ATCC 35646]
gi|74489251|gb|EAO52714.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar
israelensis ATCC 35646]
Length = 478
Score = 46.2 bits (108), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 68/305 (22%), Positives = 128/305 (41%), Gaps = 39/305 (12%)
Query: 35 MF-RDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQRNI 93
MF +D R+ DN AL AV +PV + F +G+ A+ ++ + +Q+ +
Sbjct: 10 MFQKDFRLYDNPALFEAVQSGEV--LPVYIQDETFS--IGSAAK--WWLHHAIIDVQKQL 63
Query: 94 EETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICNRVSD-SVTIH 152
+ F + G+ ++ I + + + + + + + + K+ + D +
Sbjct: 64 K-ALGSTFIIRNGKTQEEILSLIEQLDITAVYWNICYDPDRLQSNQKMKMMLEDKGIICK 122
Query: 153 EVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQPIEKWTGTRQSIDWDS 212
E ++H ++ W+ +K K N + ++ +PI K QSI W S
Sbjct: 123 EFNSHLLLEPWIIKKKDNTEYKVFTPFYNAFQKQ------VIPKPISK----VQSIKWGS 172
Query: 213 IIAAVLRKGAE--VPEIGWC-------ESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNP 263
+ A L +P I W E E+ A + K F + +L +Y R+ P
Sbjct: 173 SLPASLSVSELHLLPTIPWTSHIESIWEPTEEGAYKTFKK----FFSSKLASYSEGRDFP 228
Query: 264 LKPRALSGLSPYLHFGQISAQRC--ALEARKARKLCP---EAIDTFLEELIVRRELADNF 318
A S L+PYL FGQIS + L + + C + +++F+ +LI RE +
Sbjct: 229 -NQNAHSMLAPYLSFGQISVKLMYHYLINKSTERQCSLFEKQVNSFIRQLI-WREFSYYL 286
Query: 319 CFYQP 323
++ P
Sbjct: 287 LYHYP 291
>gi|423562452|ref|ZP_17538728.1| hypothetical protein II5_01856 [Bacillus cereus MSX-A1]
gi|401200617|gb|EJR07502.1| hypothetical protein II5_01856 [Bacillus cereus MSX-A1]
Length = 476
Score = 46.2 bits (108), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 70/305 (22%), Positives = 128/305 (41%), Gaps = 39/305 (12%)
Query: 35 MF-RDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQRNI 93
MF +D R+ DN AL AV +PV V F +G+ A+ ++ + +++ +
Sbjct: 8 MFQKDFRLYDNPALFEAVQSGEV--LPVYVQDETFS--IGSAAK--WWLHHAVIDVKKQL 61
Query: 94 EETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICNRVSD-SVTIH 152
E L + +G E+ I + + + + + + + + K+ + D +
Sbjct: 62 EALGSTLI-IRKGRTEEEILSLIEQLDITAVYWNICYDPDRLQSNQKMKMMLEDKGIICK 120
Query: 153 EVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQPIEKWTGTRQSIDWDS 212
E ++H ++ W+ +K K N + ++ +PI K QSI W S
Sbjct: 121 EFNSHLLLEPWIIKKKDNTEYKVFTPFYNAFQKQ------VIPKPISK----VQSIKWGS 170
Query: 213 IIAAVLRKGAE--VPEIGWC-------ESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNP 263
+ A L +P I W E E+ A + K F + +L +Y R+ P
Sbjct: 171 SLPASLSVSELHLLPTIPWTSHIESIWEPTEEGAYKTFKK----FFSSKLASYSEGRDFP 226
Query: 264 LKPRALSGLSPYLHFGQISAQRC--ALEARKARKLCP---EAIDTFLEELIVRRELADNF 318
A S L+PYL FGQIS + L + + C + +++F+ +LI RE +
Sbjct: 227 -NQNAHSMLAPYLSFGQISVKLMYHYLINKSTERQCSLFEKQVNSFIRQLI-WREFSYYL 284
Query: 319 CFYQP 323
++ P
Sbjct: 285 LYHYP 289
>gi|375285088|ref|YP_005105527.1| deoxyribodipyrimidine photolyase family protein [Bacillus cereus
NC7401]
gi|358353615|dbj|BAL18787.1| deoxyribodipyrimidine photolyase family protein [Bacillus cereus
NC7401]
Length = 469
Score = 46.2 bits (108), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 64/302 (21%), Positives = 121/302 (40%), Gaps = 38/302 (12%)
Query: 37 RDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQRNIEET 96
+D R+ DN AL A + ++D+ + ++ + ++R +E
Sbjct: 4 KDFRLYDNPALFEAAQSGE------VLPLYVYDETFSIGSASKWWLHHTIIDVKRQLEAL 57
Query: 97 FQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICNRVSD-SVTIHEVD 155
L + +G + I + + + G + + + + + K+ + D +T E +
Sbjct: 58 GSTLI-IRKGNTMEEILSLIEQLGITAVYWNICYDPDRLQSNQKMKMMLEDKGITCKEFN 116
Query: 156 AHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQPIEKWTGTRQSIDWDSIIA 215
+H ++ W+ +K K N + ++ +PI K QSI W S +
Sbjct: 117 SHLLLEPWIIKKKDNTEYKVFTPFYNAFQKQ------VISKPISK----VQSIKWGSSLP 166
Query: 216 AVLRKGAE--VPEIGWC-------ESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKP 266
A L +P I W E E+ A + K F + +L +Y R+ P
Sbjct: 167 ASLSVSELHLLPTIPWTSHMESIWEPTEEGAYKTCKK----FFSSKLVSYSEGRDFP-NQ 221
Query: 267 RALSGLSPYLHFGQISAQRC--ALEARKARKLCP---EAIDTFLEELIVRRELADNFCFY 321
A S L+PYL FGQIS + L + K C + +++F+ + I RE + ++
Sbjct: 222 NAHSMLAPYLSFGQISVKLMYHYLINKSNEKQCSLFEQQVNSFIRQFI-WREFSYYLLYH 280
Query: 322 QP 323
P
Sbjct: 281 YP 282
>gi|423436667|ref|ZP_17413648.1| hypothetical protein IE9_02848 [Bacillus cereus BAG4X12-1]
gi|401122403|gb|EJQ30190.1| hypothetical protein IE9_02848 [Bacillus cereus BAG4X12-1]
Length = 476
Score = 46.2 bits (108), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 77/344 (22%), Positives = 143/344 (41%), Gaps = 47/344 (13%)
Query: 37 RDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQRNIEET 96
+D R+ DN AL AV +PV V F +G+ A+ ++ + +Q+ ++
Sbjct: 11 KDFRLYDNPALFEAVQSGEV--LPVYVQDETFS--IGSAAK--WWLRHAIMDVQKQLKAL 64
Query: 97 FQILFFLFQGEAEDNIPNFVRECGASLLVTD--FSPLREIRRCKDKICNRVSDSVTIHEV 154
L + +G ++ I + +++ + + + + P R K K+ + E
Sbjct: 65 GSTLI-IRKGNTQEEILSLIKQLDITAVYWNSCYDPDRLKSNQKMKMILE-DKGIICKEF 122
Query: 155 DAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQPIEKWTGTRQSIDWDSII 214
++H ++ W+ +K K N + ++ +PI + QSI W S +
Sbjct: 123 NSHLLLEPWIIKKKDNTEYKVFTPFYNAFQKQ------VIPKPISR----VQSIKWGSSL 172
Query: 215 AAVLRKGAE--VPEIGWC-------ESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLK 265
A L +P I W E E+ A + K F + +L +Y R+ P
Sbjct: 173 PASLSVSELHLLPTIPWTSHMEAIWEPTEEGAYKTFKK----FFSSKLASYSEGRDFP-N 227
Query: 266 PRALSGLSPYLHFGQISAQRC--ALEARKARKLCP---EAIDTFLEELIVRRELADNFCF 320
A S L+PYL FGQIS + L + + C + +++F+ +LI RE + +
Sbjct: 228 QNAHSMLAPYLSFGQISVKLMFHYLINKSTERQCSLFEKQVNSFIRQLI-WREFSYYLLY 286
Query: 321 YQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADP 364
+ P S KS ++ DK E + + ++K +T P
Sbjct: 287 HYPFTVSKP-----LNKSFENFPWDKEEELLS--VWQKGETGYP 323
>gi|217960578|ref|YP_002339142.1| deoxyribodipyrimidine photolyase family protein [Bacillus cereus
AH187]
gi|229139780|ref|ZP_04268347.1| Deoxyribodipyrimidine photolyase [Bacillus cereus BDRD-ST26]
gi|423352873|ref|ZP_17330500.1| hypothetical protein IAU_00949 [Bacillus cereus IS075]
gi|423373016|ref|ZP_17350356.1| hypothetical protein IC5_02072 [Bacillus cereus AND1407]
gi|423567933|ref|ZP_17544180.1| hypothetical protein II7_01156 [Bacillus cereus MSX-A12]
gi|217063006|gb|ACJ77256.1| deoxyribodipyrimidine photolyase family protein [Bacillus cereus
AH187]
gi|228643660|gb|EEK99924.1| Deoxyribodipyrimidine photolyase [Bacillus cereus BDRD-ST26]
gi|401090879|gb|EJP99030.1| hypothetical protein IAU_00949 [Bacillus cereus IS075]
gi|401097348|gb|EJQ05371.1| hypothetical protein IC5_02072 [Bacillus cereus AND1407]
gi|401211272|gb|EJR18020.1| hypothetical protein II7_01156 [Bacillus cereus MSX-A12]
Length = 476
Score = 46.2 bits (108), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 62/298 (20%), Positives = 119/298 (39%), Gaps = 30/298 (10%)
Query: 37 RDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQRNIEET 96
+D R+ DN AL A + ++D+ + ++ + ++R +E
Sbjct: 11 KDFRLYDNPALFEAAQSGE------VLPLYVYDETFSIGSASKWWLHHTIIDVKRQLEAL 64
Query: 97 FQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICNRVSD-SVTIHEVD 155
L + +G + I + + + G + + + + + K+ + D +T E +
Sbjct: 65 GSTLI-IRKGNTMEEILSLIEQLGITAVYWNICYDPDRLQSNQKMKMMLEDKGITCKEFN 123
Query: 156 AHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQPIEKWTGTRQSIDWDSIIA 215
+H ++ W+ +K K N + ++ +PI K QSI W S +
Sbjct: 124 SHLLLEPWIIKKKDNTEYKVFTPFYNAFQKQ------VISKPISK----VQSIKWGSSLP 173
Query: 216 AVLRKGAE--VPEIGWCESGEDAAMEVLKGSKDG---FLTKRLKNYPTDRNNPLKPRALS 270
A L +P I W E +G+ F + +L +Y R+ P A S
Sbjct: 174 ASLSVSELHLLPTIPWTSHMESIWEPTEEGAYKTCKKFFSSKLVSYSEGRDFP-NQNAHS 232
Query: 271 GLSPYLHFGQISAQRC--ALEARKARKLCP---EAIDTFLEELIVRRELADNFCFYQP 323
L+PYL FGQIS + L + K C + +++F+ + I RE + ++ P
Sbjct: 233 MLAPYLSFGQISVKLMYHYLINKSNEKQCSLFEQQVNSFIRQFI-WREFSYYLLYHYP 289
>gi|218898230|ref|YP_002446641.1| deoxyribodipyrimidine photolyase [Bacillus cereus G9842]
gi|218544312|gb|ACK96706.1| deoxyribodipyrimidine photolyase family protein [Bacillus cereus
G9842]
Length = 476
Score = 46.2 bits (108), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 70/305 (22%), Positives = 128/305 (41%), Gaps = 39/305 (12%)
Query: 35 MF-RDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQRNI 93
MF +D R+ DN AL AV +PV V F +G+ A+ ++ + +++ +
Sbjct: 8 MFQKDFRLYDNPALFEAVQSGEV--LPVYVQDETFS--IGSAAK--WWLHHAVIDVKKQL 61
Query: 94 EETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICNRVSD-SVTIH 152
E L + +G E+ I + + + + + + + + K+ + D +
Sbjct: 62 EALGSTLI-IRKGRTEEEILSLIEQLDITAVYWNICYDPDRLQSNQKMKMMLEDKGIICK 120
Query: 153 EVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQPIEKWTGTRQSIDWDS 212
E ++H ++ W+ +K K N + ++ +PI K QSI W S
Sbjct: 121 EFNSHLLLEPWIIKKKDNTEYKVFTPFYNAFQKQ------VIPKPISK----VQSIKWGS 170
Query: 213 IIAAVLRKGAE--VPEIGWC-------ESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNP 263
+ A L +P I W E E+ A + K F + +L +Y R+ P
Sbjct: 171 SLPASLSVSELHLLPTIPWTSHIESIWEPTEEGAYKTFKK----FFSSKLASYSEGRDFP 226
Query: 264 LKPRALSGLSPYLHFGQISAQRC--ALEARKARKLCP---EAIDTFLEELIVRRELADNF 318
A S L+PYL FGQIS + L + + C + +++F+ +LI RE +
Sbjct: 227 -NQNAHSMLAPYLSFGQISVKLMYHYLINKSTERQCSLFEKQVNSFIRQLI-WREFSYYL 284
Query: 319 CFYQP 323
++ P
Sbjct: 285 LYHYP 289
>gi|378776172|ref|YP_005184602.1| deoxyribodipyrimidine photolyase [Legionella pneumophila subsp.
pneumophila ATCC 43290]
gi|364506979|gb|AEW50503.1| deoxyribodipyrimidine photolyase [Legionella pneumophila subsp.
pneumophila ATCC 43290]
Length = 472
Score = 46.2 bits (108), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 40/113 (35%), Positives = 52/113 (46%), Gaps = 16/113 (14%)
Query: 224 VPEIGWCE-------SGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYL 276
+P I W GE+ A + L D F+ L Y DR+ P K A S LSP+L
Sbjct: 185 LPAINWAARFSEYWIPGEEGAQKKL----DEFIVHHLSGYKRDRDFPAK-NATSRLSPHL 239
Query: 277 HFGQISAQRC--ALEARKARKLCPEA-IDTFLEELIVRRELADNFCFYQPNYD 326
HFG+IS ALE K C A ++ FL EL RE + ++ P D
Sbjct: 240 HFGEISPWVILRALELAKLEHTCDLASVEHFLSEL-GWREFSVYLLYHFPKLD 291
>gi|52840467|ref|YP_094266.1| deoxyribodipyrimidine photolyase [Legionella pneumophila subsp.
pneumophila str. Philadelphia 1]
gi|52627578|gb|AAU26319.1| deoxyribodipyrimidine photolyase [Legionella pneumophila subsp.
pneumophila str. Philadelphia 1]
Length = 471
Score = 46.2 bits (108), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 40/113 (35%), Positives = 52/113 (46%), Gaps = 16/113 (14%)
Query: 224 VPEIGWCE-------SGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYL 276
+P I W GE+ A + L D F+ L Y DR+ P K A S LSP+L
Sbjct: 184 LPAINWAARFSEYWIPGEEGAQKKL----DEFIVHHLSGYKRDRDFPAK-NATSRLSPHL 238
Query: 277 HFGQISAQRC--ALEARKARKLCPEA-IDTFLEELIVRRELADNFCFYQPNYD 326
HFG+IS ALE K C A ++ FL EL RE + ++ P D
Sbjct: 239 HFGEISPWVILRALELAKLEHTCDLASVEHFLSEL-GWREFSVYLLYHFPKLD 290
>gi|350563289|ref|ZP_08932111.1| Deoxyribodipyrimidine photo-lyase [Thioalkalimicrobium aerophilum
AL3]
gi|349779153|gb|EGZ33500.1| Deoxyribodipyrimidine photo-lyase [Thioalkalimicrobium aerophilum
AL3]
Length = 478
Score = 46.2 bits (108), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 36/103 (34%), Positives = 51/103 (49%), Gaps = 15/103 (14%)
Query: 231 ESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQIS------AQ 284
+ GE AA + + FLT + +YP R+ P S LS +LHFG+IS A
Sbjct: 201 QMGEQAAWQ----QANNFLTDSIHHYPKQRDFP-SIMGTSQLSIHLHFGEISSVAILEAC 255
Query: 285 RCALEARKARKLCPEAIDTFLEELIVRRELADNFCFYQPNYDS 327
R A+ +R A EAI F+ +LI RE A F+ P+ +
Sbjct: 256 RNAITSRPADS---EAIHAFIRQLI-WREFARYLLFFNPDLQT 294
>gi|83951316|ref|ZP_00960048.1| deoxyribodipyrimidine photolyase [Roseovarius nubinhibens ISM]
gi|83836322|gb|EAP75619.1| deoxyribodipyrimidine photolyase [Roseovarius nubinhibens ISM]
Length = 473
Score = 45.8 bits (107), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 68/282 (24%), Positives = 107/282 (37%), Gaps = 38/282 (13%)
Query: 69 DQFLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLL--VT 126
DQ G A + G+ + R + E L L G+A + + V E GA +
Sbjct: 39 DQMHGLGAAPKWRLGLGIEAMGRALAEKGSRLI-LRSGQAAEVLSALVEETGAGAVYWTR 97
Query: 127 DFSPLREIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPE 186
+ P I R + V+ V H + W +T +G K+
Sbjct: 98 AYDP-ESIARDRGVKETLVAAGVEAQSHAGHLLFEPW--------EVETGQGSYYKVYTP 148
Query: 187 YL-------IDYPMLEQPIE-----KWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGE 234
Y + P L P E W + DW + A +++GA V C +
Sbjct: 149 YWNAVKSRDVAAP-LTAPAEITAPAHWPESEDLDDW--ALGAAMQRGAAV-----CLPHQ 200
Query: 235 DAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKAR 294
+G F+ + + Y R+ P + SGLS L G+IS ++C A +AR
Sbjct: 201 HVGEATAQGRLGAFMAQGIAEYRARRDLPGEA-GTSGLSENLSLGEISIRQCWHAAMRAR 259
Query: 295 KLCPEAIDTFLEELIVRRELADNFCFYQPNYDSLKGAW--EW 334
+ +T+ +EL V RE A + ++ P S G W EW
Sbjct: 260 QEGAAGAETWAKEL-VWREFAYHLIYHTPRLAS--GNWREEW 298
>gi|387824331|ref|YP_005823802.1| Deoxyribodipyrimidine photolyase [Francisella cf. novicida 3523]
gi|328675930|gb|AEB28605.1| Deoxyribodipyrimidine photolyase [Francisella cf. novicida 3523]
Length = 464
Score = 45.8 bits (107), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 55/107 (51%), Gaps = 17/107 (15%)
Query: 225 PEIGW------CESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHF 278
P++ W + GE AA ++L + FLT ++K+Y R+ + A S LSPYLHF
Sbjct: 184 PKLTWQNIIKQWQVGEKAAAQLL----EQFLTTKIKDYKIARD-YMSTDATSTLSPYLHF 238
Query: 279 GQISAQRCALEARKARKLCPEAIDTFLEELIVRRELADNFCFYQPNY 325
G+IS + A ++ + F++EL+ R +F +YQ Y
Sbjct: 239 GEISPNQI-FNAVQSLDSIGNNEEHFIKELVWR-----DFSYYQIYY 279
>gi|42782239|ref|NP_979486.1| deoxyribodipyrimidine photolyase [Bacillus cereus ATCC 10987]
gi|42738164|gb|AAS42094.1| deoxyribodipyrimidine photolyase family protein [Bacillus cereus
ATCC 10987]
Length = 476
Score = 45.8 bits (107), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 68/299 (22%), Positives = 127/299 (42%), Gaps = 32/299 (10%)
Query: 37 RDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQRNIEET 96
+D R+ DN AL A VPV V F +G+ ++ ++ + +++ +E
Sbjct: 11 KDFRLYDNPALFKATQSGEV--VPVYVHDETFS--MGSASK--WWLHHAIIDVKKQLEAL 64
Query: 97 FQILFFLFQGEAEDNIPNFVRECGASLLVTD--FSPLREIRRCKDKICNRVSDSVTIHEV 154
L + +G E+ I + + + G + + + + P R ++ ++ +T E
Sbjct: 65 GSTLI-IRKGSTEEEILSLIEQLGITAVYWNICYDPDR-LQFNQNMKMMLEDKGITCKEF 122
Query: 155 DAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQPIEKWTGTRQSIDWDSII 214
++H ++ W+ +K K N + ++ +PI K QSI W S +
Sbjct: 123 NSHLLLEPWMIKKKDNTEYKVFTPFYNAFQKQ------VISKPISK----VQSIKWGSSL 172
Query: 215 AAVLR--KGAEVPEIGWC---ESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRAL 269
L + +P I W ES D E + F + +L +Y R+ P A
Sbjct: 173 PESLSVTELHLLPTIPWTSHIESIWDPTEEGAYKTCKKFFSSKLASYSEGRDFP-NQNAH 231
Query: 270 SGLSPYLHFGQISAQRC--ALEARKARKLCP---EAIDTFLEELIVRRELADNFCFYQP 323
S L+PYL FGQIS + L + + C + +++F+ +LI RE + ++ P
Sbjct: 232 SMLAPYLSFGQISVRWMYHYLINKSTERQCSLFEKQVNSFIRQLI-WREFSYYLLYHYP 289
>gi|386828473|ref|ZP_10115580.1| deoxyribodipyrimidine photolyase [Beggiatoa alba B18LD]
gi|386429357|gb|EIJ43185.1| deoxyribodipyrimidine photolyase [Beggiatoa alba B18LD]
Length = 477
Score = 45.8 bits (107), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 56/112 (50%), Gaps = 17/112 (15%)
Query: 224 VPEIGW-------CESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYL 276
+P+I W + GE A +L + + + + Y T R+ P P ++S LSPYL
Sbjct: 189 LPKITWDSGFYQTWQVGEVHAQHLL----NQWCEQAMMEYATQRDFPANPVSVSHLSPYL 244
Query: 277 HFGQISAQRCALEARKARKLCPEAIDT----FLEELIVRRELADNFCFYQPN 324
HFG++S ++ KA+ L P AI T +L +L RE A ++ P+
Sbjct: 245 HFGELSPRQVFHAILKAQALNP-AITTGGNAYLRQL-YWREFAHYLLYHFPH 294
>gi|424793391|ref|ZP_18219508.1| Putative photolyase [Xanthomonas translucens pv. graminis
ART-Xtg29]
gi|422796635|gb|EKU25108.1| Putative photolyase [Xanthomonas translucens pv. graminis
ART-Xtg29]
Length = 473
Score = 45.8 bits (107), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 72/304 (23%), Positives = 121/304 (39%), Gaps = 28/304 (9%)
Query: 31 VVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQ 90
+ W RD R+ D+ +HA A VPV V + A A L ++ R L L
Sbjct: 4 AIVWFRRDLRLHDH-PALHAALAAGHTPVPVYVHSPGDEGAWAAGAASLSWLQRALAALD 62
Query: 91 RNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTD--FSPLREIRRCKDKICNRVSDS 148
++ L L QG AE + + ECGA + + + P + R + K R +
Sbjct: 63 AQLQARGSRLI-LRQGPAETVLRELIAECGAVAVYWNRRYEPATQPRDARLKRELR-AQG 120
Query: 149 VTIHEVDAHNVVPVW-VASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQPIEKWTGTRQS 207
+ +H + + W +A+++ G P + + P+ +
Sbjct: 121 LEVHSYNGALLFEPWQLATQQ--------GGPYKVFTPFWRSALSHWQVPVLRPAPKTLP 172
Query: 208 IDWDSIIAAVLRKGAEVPEIGW-------CESGEDAAMEVLKGSKDGFLTKRLKNYPTDR 260
++ + L++ P +GW + GE A E L+ DG L+ Y R
Sbjct: 173 PPPPALPSLPLQQLGLAPALGWDRGFWDVWQPGEAGAHEALEVFVDG----ALRGYVAGR 228
Query: 261 NNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCP-EAIDTFLEELIVRRELADNFC 319
+ P + S LSP+LHFG+I+ R AR AID ++ +L R+ A +
Sbjct: 229 DRPDQ-IGTSRLSPHLHFGEIAPWRIVAALENARSAATGAAIDGYIRQLGW-RDFAHHLL 286
Query: 320 FYQP 323
+ P
Sbjct: 287 HHFP 290
>gi|121997706|ref|YP_001002493.1| deoxyribodipyrimidine photo-lyase [Halorhodospira halophila SL1]
gi|121589111|gb|ABM61691.1| Deoxyribodipyrimidine photo-lyase [Halorhodospira halophila SL1]
Length = 477
Score = 45.8 bits (107), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 43/132 (32%), Positives = 60/132 (45%), Gaps = 22/132 (16%)
Query: 196 QPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLKN 255
QP+E G I WD +A + GA +G +E FL
Sbjct: 180 QPLET-LGLLPRIRWDEKLAPCWQPGA---------AGAQQRLER-------FLDGAGPA 222
Query: 256 YPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCP---EAIDTFLEELIVRR 312
Y R+ P +P S LSP+LHFG+IS + R A+++ P +A+DTFL EL R
Sbjct: 223 YGERRDFPAQP-GTSRLSPHLHFGEISIRAVWHAVRDAQQMQPAAADALDTFLAELGW-R 280
Query: 313 ELADNFCFYQPN 324
E A + + QP
Sbjct: 281 EFAYHLLWQQPE 292
>gi|254485504|ref|ZP_05098709.1| deoxyribodipyrimidine photolyase [Roseobacter sp. GAI101]
gi|214042373|gb|EEB83011.1| deoxyribodipyrimidine photolyase [Roseobacter sp. GAI101]
Length = 465
Score = 45.8 bits (107), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 69/297 (23%), Positives = 119/297 (40%), Gaps = 24/297 (8%)
Query: 34 WMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQRNI 93
W RD R+ D+ AL A Q + +PV + + A +LG G+ +
Sbjct: 2 WFRRDLRLTDHPAL-SAAAQTGRPVIPVFIRDDAVAGLGAAPKWRLGL---GIGAFDDAL 57
Query: 94 EETFQILFFLFQGEAEDNIPNFVRECGASLLVTD--FSPLREIRRCKDKICNRVSDSVTI 151
E L L +G+A + + + ++E GA + + P R K + +D V
Sbjct: 58 REKSSRLI-LRKGDALEVLQDLIKETGAGAVYWSRLYDPQATARDADIKEALKGAD-VEA 115
Query: 152 HEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPM-----LEQPIEKWTGTRQ 206
H + W K + K N + +D P+ L P + W +
Sbjct: 116 RSFGGHLMFEPWTVETKTGGNYKVYTPFWNAV-KNTGVDAPLSAPKNLTAP-DTWPRSDD 173
Query: 207 SIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKP 266
+W + +++GA+V + + GE +A L F+ + +Y +R+ P
Sbjct: 174 LAEW--TMGGAMQRGADVVRP-FVQLGEKSAQSRLGA----FMAHGVADYKANRDLP-GV 225
Query: 267 RALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVRRELADNFCFYQP 323
S LS L G+IS +C ++A + +TFL+EL V RE A + + P
Sbjct: 226 DGTSNLSENLALGEISPHQCWHAGQRALHDGKQGAETFLKEL-VWREFAYHLMHHSP 281
>gi|387813308|ref|YP_005428790.1| deoxyribodipyrimidine photolyase, FAD-binding (Photoreactivating
enzyme) [Marinobacter hydrocarbonoclasticus ATCC 49840]
gi|381338320|emb|CCG94367.1| deoxyribodipyrimidine photolyase, FAD-binding (Photoreactivating
enzyme) [Marinobacter hydrocarbonoclasticus ATCC 49840]
Length = 463
Score = 45.8 bits (107), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 53/95 (55%), Gaps = 13/95 (13%)
Query: 232 SGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSG---LSPYLHFGQISAQRCAL 288
+GEDAA E L + FL R K+Y +R+ P AL G LSPYL G +S ++C +
Sbjct: 202 TGEDAAHEQL----EAFLADRAKDYKDNRDFP----ALDGTSQLSPYLANGVLSGRQCLI 253
Query: 289 EARKARKLCPEAIDTFLEELIVRRELADNFCFYQP 323
A+++ L E ++T++ E I R+ + ++ P
Sbjct: 254 AAKQS-GLSGEGVETWINE-IAWRDFYIHILYHYP 286
>gi|374619940|ref|ZP_09692474.1| deoxyribodipyrimidine photolyase [gamma proteobacterium HIMB55]
gi|374303167|gb|EHQ57351.1| deoxyribodipyrimidine photolyase [gamma proteobacterium HIMB55]
Length = 481
Score = 45.8 bits (107), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 38/107 (35%), Positives = 53/107 (49%), Gaps = 18/107 (16%)
Query: 222 AEVPE--IGW---CESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYL 276
A VP+ GW E GED A L + FL + +Y R+ P + R S LSP+L
Sbjct: 191 AGVPDWAAGWEDIWEPGEDGAHNAL----EAFLDAPVAHYSEGRDLPAR-RYTSRLSPHL 245
Query: 277 HFGQISAQRCALEARKARKLCPE---AIDTFLEELIVRRELADNFCF 320
FG+IS ++ A++ + PE AID FL E+ R FC+
Sbjct: 246 KFGEISPRQVWASAQQRKLSAPEWTSAIDKFLAEIGWRE-----FCY 287
>gi|387906116|ref|YP_006336453.1| Deoxyribodipyrimidine photolyase [Burkholderia sp. KJ006]
gi|387581008|gb|AFJ89722.1| Deoxyribodipyrimidine photolyase [Burkholderia sp. KJ006]
Length = 505
Score = 45.4 bits (106), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 68/293 (23%), Positives = 110/293 (37%), Gaps = 50/293 (17%)
Query: 19 LKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQ 78
+ + L + PVV W DQR+ DN AL HA+D + PV + R
Sbjct: 1 MTRSDLPHEARPVVVWFRDDQRLADNPALTHALDTGH----PVVCVY--VHDAAPKHGRA 54
Query: 79 LGFMLRGLRLLQRNIEETFQIL------FFLFQGEAEDNIPNFVRECGASLLVTDFSPLR 132
+G R L ++ + L L +G + I F GA+++V + +
Sbjct: 55 MGGAQRWW--LHESLSKLDDALAAHGGSLILLRGNEHEAITGFASAIGAAMVVWNRRYAK 112
Query: 133 EIRRCKDKICNRVSD-SVTIHEVDAHNVVPVWVASEKLE-----YSAKTLRGKINKLLP- 185
I + D + + + H + W + + +SA + + P
Sbjct: 113 AQTGTDASIKRDLIDRGIAVSTFNGHLLREPWTVTTREGLPFQVFSAYWRAARRDDFFPP 172
Query: 186 ------EYLIDYPMLEQPIEKWTGTRQ------SIDWDSIIAAVLRKGAEVPEIGWCESG 233
++ +P+ R+ + DW A LR+ + G
Sbjct: 173 VPLPAPSHIRFFPVPAHATPHVCTLRELELQPSAPDW----AGGLRET--------WQCG 220
Query: 234 EDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRC 286
E AA + L + FL L +YPT R+ P RA S LSPYL FG IS ++
Sbjct: 221 EQAASDQL----EAFLENSLSDYPTLRDFPAA-RATSRLSPYLRFGNISVRQV 268
>gi|397662777|ref|YP_006504315.1| deoxyribodipyrimidine photo-lyase [Legionella pneumophila subsp.
pneumophila]
gi|395126188|emb|CCD04368.1| Deoxyribodipyrimidine photo-lyase [Legionella pneumophila subsp.
pneumophila]
Length = 471
Score = 45.4 bits (106), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 42/124 (33%), Positives = 57/124 (45%), Gaps = 16/124 (12%)
Query: 213 IIAAVLRKGAEVPEIGWC-------ESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLK 265
I + L K +P I W GE+ A + L + F+ L Y DR+ P K
Sbjct: 173 ITSDDLGKWKLLPAINWAARFSEYWTPGEEGAQKKL----NEFVVHHLSGYKRDRDFPAK 228
Query: 266 PRALSGLSPYLHFGQISAQRC--ALEARKARKLCPEA-IDTFLEELIVRRELADNFCFYQ 322
A S LSP+LHFG+IS ALE K + C A ++ FL EL RE + ++
Sbjct: 229 -NATSRLSPHLHFGEISPWVILRALELAKLEQTCDLASVEHFLSEL-GWREFSVYLLYHF 286
Query: 323 PNYD 326
P D
Sbjct: 287 PKLD 290
>gi|47564301|ref|ZP_00235346.1| deoxyribodipyrimidine photolyase classI [Bacillus cereus G9241]
gi|47558453|gb|EAL16776.1| deoxyribodipyrimidine photolyase classI [Bacillus cereus G9241]
Length = 476
Score = 45.4 bits (106), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 64/298 (21%), Positives = 118/298 (39%), Gaps = 30/298 (10%)
Query: 37 RDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQRNIEET 96
+D R+ DN AL A VPV V F +G+ A+ ++ + +Q+ ++
Sbjct: 11 KDFRLYDNPALFEAAQSGEV--VPVYVQDETFS--IGSAAK--WWLHHAIIDVQKQLK-A 63
Query: 97 FQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICNRVSD-SVTIHEVD 155
F + +G+ ++ I + + + + + + + + K+ + D + E +
Sbjct: 64 LGATFIIRKGKTQEEILSLIEQLDITAVYWNICYEPDRLQSNQKMKMMLEDKGIICKEFN 123
Query: 156 AHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQPIEKWTGTRQSIDWDSIIA 215
+H ++ W+ +K K N +Q I K T QSI W S +
Sbjct: 124 SHLLLEPWIIKKKDNTEYKVFTPFYNAFQ----------KQAIPKPTSKVQSIKWGSSLP 173
Query: 216 AVLRKGAE--VPEIGWCESGEDAAMEVLKGSKDGF---LTKRLKNYPTDRNNPLKPRALS 270
A L +P I W E +G+ F + +L Y R+ P S
Sbjct: 174 ASLSVSELHLLPTIPWTSHMESIWNPTEEGAYKTFKKFFSSKLTFYSEGRDFP-NQNVHS 232
Query: 271 GLSPYLHFGQISAQ-----RCALEARKARKLCPEAIDTFLEELIVRRELADNFCFYQP 323
L+PYL FGQIS + + L + +++F+ +LI RE + ++ P
Sbjct: 233 MLAPYLSFGQISVKLMFHYLINKSTERQSSLFEKQVNSFIRQLI-WREFSYYLLYHYP 289
>gi|134291309|ref|YP_001115078.1| deoxyribodipyrimidine photo-lyase type I [Burkholderia
vietnamiensis G4]
gi|134134498|gb|ABO58823.1| deoxyribodipyrimidine photo-lyase type I [Burkholderia
vietnamiensis G4]
Length = 505
Score = 45.4 bits (106), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 68/293 (23%), Positives = 110/293 (37%), Gaps = 50/293 (17%)
Query: 19 LKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQ 78
+ + L + PVV W DQR+ DN AL HA+D + PV + R
Sbjct: 1 MTRSDLPHEARPVVVWFRDDQRLADNPALTHALDTGH----PVVCVY--VHDAAPKHGRA 54
Query: 79 LGFMLRGLRLLQRNIEETFQIL------FFLFQGEAEDNIPNFVRECGASLLVTDFSPLR 132
+G R L ++ + L L +G + I F GA+++V + +
Sbjct: 55 MGGAQRWW--LHESLSKLDDALAAHGGSLILLRGNEHEAITGFAAAIGAAMVVWNRRYAK 112
Query: 133 EIRRCKDKICNRVSD-SVTIHEVDAHNVVPVWVASEKLE-----YSAKTLRGKINKLLP- 185
I + D + + + H + W + + +SA + + P
Sbjct: 113 AQTGTDASIKRDLIDRGIAVSTFNGHLLREPWTVTTREGLPFQVFSAYWRAARRDDFFPP 172
Query: 186 ------EYLIDYPMLEQPIEKWTGTRQ------SIDWDSIIAAVLRKGAEVPEIGWCESG 233
++ +P+ R+ + DW A LR+ + G
Sbjct: 173 VPLPAPSHIRFFPVPAHATPHVCTLRELELQPSAPDW----AGGLRET--------WQCG 220
Query: 234 EDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRC 286
E AA + L + FL L +YPT R+ P RA S LSPYL FG IS ++
Sbjct: 221 EQAASDQL----EAFLENSLSDYPTLRDFPAA-RATSRLSPYLRFGNISVRQV 268
>gi|54296244|ref|YP_122613.1| hypothetical protein lpp0271 [Legionella pneumophila str. Paris]
gi|53750029|emb|CAH11419.1| hypothetical protein lpp0271 [Legionella pneumophila str. Paris]
Length = 471
Score = 45.4 bits (106), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 42/124 (33%), Positives = 57/124 (45%), Gaps = 16/124 (12%)
Query: 213 IIAAVLRKGAEVPEIGWC-------ESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLK 265
I + L K +P I W GE+ A + L D F+ L Y +R+ P K
Sbjct: 173 ITSDDLGKWKLLPAINWAARFSEYWTPGEEGAQKKL----DEFIVHHLSGYKRERDFPAK 228
Query: 266 PRALSGLSPYLHFGQISAQRC--ALEARKARKLCPEA-IDTFLEELIVRRELADNFCFYQ 322
A S LSP+LHFG+IS ALE K + C A ++ FL EL RE + ++
Sbjct: 229 -NATSRLSPHLHFGEISPWVILRALELAKLEQTCDLASVEHFLSEL-GWREFSVYLLYHF 286
Query: 323 PNYD 326
P D
Sbjct: 287 PKLD 290
>gi|409400169|ref|ZP_11250320.1| deoxyribodipyrimidine photo-lyase [Acidocella sp. MX-AZ02]
gi|409130775|gb|EKN00515.1| deoxyribodipyrimidine photo-lyase [Acidocella sp. MX-AZ02]
Length = 467
Score = 45.4 bits (106), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 45/83 (54%), Gaps = 4/83 (4%)
Query: 242 KGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAI 301
K + FL +++Y T R+ P + S LSP+ HFG+IS + AR A E +
Sbjct: 201 KARLEAFLAGPVQDYATARDIPGR-HGTSKLSPHAHFGEISPRYVWHRARAAG--AGEGV 257
Query: 302 DTFLEELIVRRELADNFCFYQPN 324
+TFL+EL+ RE + N + P+
Sbjct: 258 ETFLKELLW-REFSINLLWQHPD 279
>gi|30315019|gb|AAP30741.1|AF500083_1 photolyase [Fusarium oxysporum]
Length = 630
Score = 45.4 bits (106), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 80/318 (25%), Positives = 133/318 (41%), Gaps = 42/318 (13%)
Query: 23 SLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKAR---QL 79
S+D K+ VV+W D R+ DN AL A D+A + VP+ + + Q A R ++
Sbjct: 131 SIDVKKA-VVHWFKMDLRLSDNRALALASDKAKEAGVPLIAMYIISPQDYEAHLRSPVRV 189
Query: 80 GFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVREC----GASLLVTDFS-PLREI 134
FMLR L +++ ++ + I ++ E +P+ + E GA L + + E+
Sbjct: 190 DFMLRTLEVIKHDLAK-LDIPLYVETVEKRKRVPDRILELMDQWGAGHLYANMEYEVDEL 248
Query: 135 RRCKDKICNRVSDSVTIHEVDAHNVVP---VWVASEKLEYSAKT--LRGKINKLLPEYLI 189
RR I + + V VVP + + K +Y+ T R + + +
Sbjct: 249 RREASMIRDFAENGKAFEVVHDTCVVPPGELHTGAGK-QYAVYTPWYRSWVAHIHEN--L 305
Query: 190 DYPMLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVL-------- 241
D L +P EK + + + A + E+P+ + + E L
Sbjct: 306 DLLELYEPPEKNPSSAR-----KVFAKLF--DVEIPDAPKSKRLDGEEKERLRSLWPCGE 358
Query: 242 ---KGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEAR---KARK 295
K D F + + NY RN P + S +S +L G ISA+ C AR K +K
Sbjct: 359 HEAKKRLDKFCEEMIGNYQKKRNIPAEA-GTSSISVHLASGTISARTCVRTARDRNKTKK 417
Query: 296 L--CPEAIDTFLEELIVR 311
L E I T++ E+ R
Sbjct: 418 LNGGNEGIQTWISEVAWR 435
>gi|395493322|ref|ZP_10424901.1| deoxyribodipyrimidine photo-lyase [Sphingomonas sp. PAMC 26617]
Length = 456
Score = 45.4 bits (106), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 77/319 (24%), Positives = 122/319 (38%), Gaps = 59/319 (18%)
Query: 30 PVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQF-----LGAKARQLGFMLR 84
P++ W+ RD R+ D AL+ A+ N+ PV + L D +G +R ++
Sbjct: 3 PIILWLRRDLRLADQPALLAAI-----NDGPVIPVYILDDDTPEKYAMGGASRW--WLHH 55
Query: 85 GLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLL--VTDFSPL-----REIRRC 137
L L ++ E L L +G+ + + E GA+ + + F P + +
Sbjct: 56 SLEGLDSDLREKGSRLI-LRRGKCVEVLAQLAEETGATQVHCIRHFEPWWRKAEEAVAKH 114
Query: 138 KDKICNRVS-----DSVTIHEVDAHNV-VPVWVASEKLEYSAKTLRGKINKLLPEYLIDY 191
D +C+ + S+T + + P W A ++ + P I
Sbjct: 115 LDLVCHDGNYLARPGSITTGSGGQYKIYTPFWRALKQ-------------HMPPPAPIHK 161
Query: 192 PMLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCES---GEDAAMEVLKGSKDGF 248
P KW + DW L G+ + GEDAA L K
Sbjct: 162 PAKIPAPSKWPKSDVLADW------TLLPTKPDWSTGFSDDWTPGEDAAHNRLNAFK--- 212
Query: 249 LTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEEL 308
K+ +Y RN P + S LSP+LHFG++SA + A ++D FL E
Sbjct: 213 --KQADDYDDTRNFPSQ-EGSSRLSPHLHFGELSAA----QVWHAVADVGGSVDVFLSE- 264
Query: 309 IVRRELADNFCFYQPNYDS 327
I R+ A N P Y S
Sbjct: 265 IGWRDYAQNVILQYPEYGS 283
>gi|397665892|ref|YP_006507429.1| deoxyribodipyrimidine photo-lyase [Legionella pneumophila subsp.
pneumophila]
gi|395129303|emb|CCD07533.1| Deoxyribodipyrimidine photo-lyase [Legionella pneumophila subsp.
pneumophila]
Length = 471
Score = 45.1 bits (105), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 42/124 (33%), Positives = 57/124 (45%), Gaps = 16/124 (12%)
Query: 213 IIAAVLRKGAEVPEIGWC-------ESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLK 265
I + L K +P I W GE+ A + L D F+ L Y +R+ P K
Sbjct: 173 ITSDDLGKWKLLPAINWAARFSEYWTPGEEGAQKKL----DEFIVHNLSGYKRERDFPAK 228
Query: 266 PRALSGLSPYLHFGQISAQRC--ALEARKARKLCPEA-IDTFLEELIVRRELADNFCFYQ 322
A S LSP+LHFG+IS ALE K + C A ++ FL EL RE + ++
Sbjct: 229 -NATSRLSPHLHFGEISPWVILRALELAKLEQTCDLASVEHFLSEL-GWREFSVYLLYHF 286
Query: 323 PNYD 326
P D
Sbjct: 287 PKLD 290
>gi|376292230|ref|YP_005163904.1| putative riboflavin biosynthesis
diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Corynebacterium diphtheriae HC02]
gi|372109553|gb|AEX75613.1| putative riboflavin biosynthesis protein [Corynebacterium
diphtheriae HC02]
Length = 446
Score = 45.1 bits (105), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 72/278 (25%), Positives = 105/278 (37%), Gaps = 56/278 (20%)
Query: 31 VVYWMFRDQRVRDNWALIHAVDQANKNNV---PVAVAFNLFDQFLGAKAR---QLGFMLR 84
VV W D RV DN AL+ A + N V +A + + LG + +
Sbjct: 5 VVVWFRDDLRVHDNPALMKAWELVRANPADLHAVYIANEVGVRPLGGAVKWWLHHSLLAL 64
Query: 85 GLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICNR 144
+L QR + + G+ +P V CGA+ + + R D
Sbjct: 65 SEQLAQRGVR------LHVLSGDPLTLLPQLVTSCGATAVT--------MNRRYDPAARS 110
Query: 145 VSDSVTIHEVDAHNV----VPVWVASEKLEYSAKT-------------LRGKINKLLPEY 187
+ D+ + + AH+V P + +E E + T LR I L +
Sbjct: 111 IDDAF-VADASAHDVEVYDFPCHLLAEPGEITTTTGGSYKVFTPFSRNLRDAIGDLPLDT 169
Query: 188 LIDYPMLEQPIEKWTGTRQSI---DWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGS 244
L P +QPI+ T T+ +I WD+ AA + K GE AA E L
Sbjct: 170 LAAPPKAKQPIDD-TETQAAIADLGWDAWWAASISKA--------WTPGEPAAREALAE- 219
Query: 245 KDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQIS 282
L L Y DR+ P S LSP L FG++S
Sbjct: 220 ----LDDILPRYLDDRDRP-DIDGTSRLSPRLRFGELS 252
>gi|54293218|ref|YP_125633.1| hypothetical protein lpl0266 [Legionella pneumophila str. Lens]
gi|53753050|emb|CAH14497.1| hypothetical protein lpl0266 [Legionella pneumophila str. Lens]
Length = 471
Score = 45.1 bits (105), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 42/124 (33%), Positives = 57/124 (45%), Gaps = 16/124 (12%)
Query: 213 IIAAVLRKGAEVPEIGWC-------ESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLK 265
I + L K +P I W GE+ A + L D F+ L Y +R+ P K
Sbjct: 173 ITSDDLGKWKLLPAINWAARFSEYWTPGEEGAQKKL----DEFIVHHLSGYKRERDFPAK 228
Query: 266 PRALSGLSPYLHFGQISAQRC--ALEARKARKLCPEA-IDTFLEELIVRRELADNFCFYQ 322
A S LSP+LHFG+IS ALE K + C A ++ FL EL RE + ++
Sbjct: 229 -NATSRLSPHLHFGEISPWVILRALELAKLEQTCDLASVEHFLSEL-GWREFSVYLLYHF 286
Query: 323 PNYD 326
P D
Sbjct: 287 PKLD 290
>gi|375292051|ref|YP_005126590.1| putative riboflavin biosynthesis protein [Corynebacterium
diphtheriae INCA 402]
gi|371581722|gb|AEX45388.1| putative riboflavin biosynthesis protein [Corynebacterium
diphtheriae INCA 402]
Length = 446
Score = 45.1 bits (105), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 72/278 (25%), Positives = 105/278 (37%), Gaps = 56/278 (20%)
Query: 31 VVYWMFRDQRVRDNWALIHAVDQANKNNV---PVAVAFNLFDQFLGAKAR---QLGFMLR 84
VV W D RV DN AL+ A + N V +A + + LG + +
Sbjct: 5 VVVWFRDDLRVHDNPALMKAWELVRANPADLHAVYIANEVGVRPLGGAVKWWLHHSLLAL 64
Query: 85 GLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICNR 144
+L QR + + G+ +P V CGA+ + + R D
Sbjct: 65 SEQLAQRGVR------LHVLSGDPLTLLPQLVTSCGATAVT--------MNRRYDPAARS 110
Query: 145 VSDSVTIHEVDAHNV----VPVWVASEKLEYSAKT-------------LRGKINKLLPEY 187
+ D+ + + AH+V P + +E E + T LR I L +
Sbjct: 111 IDDAF-VADASAHDVEVYDFPCHLLAEPGEITTTTGGSYKVFTPFSRNLRDAIGDLPLDT 169
Query: 188 LIDYPMLEQPIEKWTGTRQSI---DWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGS 244
L P +QPI+ T T+ +I WD+ AA + K GE AA E L
Sbjct: 170 LAAPPKAKQPIDD-TETQAAIADLGWDAWWAASISKA--------WTPGEPAAREALAE- 219
Query: 245 KDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQIS 282
L L Y DR+ P S LSP L FG++S
Sbjct: 220 ----LDDILPRYLDDRDRP-DIDGTSRLSPRLRFGELS 252
>gi|367475309|ref|ZP_09474774.1| Deoxyribodipyrimidine photo-lyase (DNA photolyase)
(Photoreactivating enzyme) [Bradyrhizobium sp. ORS 285]
gi|365272410|emb|CCD87242.1| Deoxyribodipyrimidine photo-lyase (DNA photolyase)
(Photoreactivating enzyme) [Bradyrhizobium sp. ORS 285]
Length = 415
Score = 45.1 bits (105), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 50/97 (51%), Gaps = 9/97 (9%)
Query: 231 ESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEA 290
++GE AA + L + FLT + Y DR+ P A S LSP+L FG+IS ++ A
Sbjct: 139 QAGERAAQQRL----NDFLTSSVGTYAADRDRP-DVEATSRLSPHLRFGEISPRQIFHAA 193
Query: 291 RKA---RKLCPEAIDTFLEELIVRRELADNFCFYQPN 324
R A R + ID FL E + RE + + + P+
Sbjct: 194 RFAAEERPALAKGIDKFLSE-VGWREFSRHLLYNNPD 229
>gi|229191248|ref|ZP_04318236.1| Deoxyribodipyrimidine photolyase [Bacillus cereus ATCC 10876]
gi|228592263|gb|EEK50094.1| Deoxyribodipyrimidine photolyase [Bacillus cereus ATCC 10876]
Length = 476
Score = 45.1 bits (105), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 69/304 (22%), Positives = 128/304 (42%), Gaps = 42/304 (13%)
Query: 37 RDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQRNIEET 96
+D R+ DN AL AV +PV V F +G+ A+ ++ + +Q+ +E
Sbjct: 11 KDFRLYDNPALFEAVQSGEV--LPVYVQDETFS--IGSAAK--WWLHHAIIDVQKQLEAL 64
Query: 97 FQILFFLFQGEAEDNIPNFVRECGASLLVTD--FSPLREIRRCKDKICNRVSD-SVTIHE 153
L + +G ++ I + +++ + + + + P R + K+ + D + E
Sbjct: 65 GSTLI-IRKGNTQEEILSLIKQLDITAVYWNSCYDPDR--LKSNQKMKMMLEDKGIICKE 121
Query: 154 VDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQPIEKWTGTRQSIDWDSI 213
++H ++ W+ +K K N + ++ +PI + QSI W S
Sbjct: 122 FNSHLLLEPWIIKKKDNTEYKVFTPFYNAFQKQ------VIPKPISR----VQSIKWGSS 171
Query: 214 IAAVLRKGAE--VPEIGWC-------ESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPL 264
+ A L +P I W E E+ A + K F + +L +Y R+ P
Sbjct: 172 LPASLSVSELHLLPTIPWTSHMEAIWEPTEEGAYKTFKK----FFSSKLASYSEGRDFP- 226
Query: 265 KPRALSGLSPYLHFGQISAQRC--ALEARKARKLCP---EAIDTFLEELIVRRELADNFC 319
A S L+PYL FGQIS + L + + C + + +F+ +LI RE +
Sbjct: 227 NQNAHSMLAPYLSFGQISVKLMYHYLINKSTERQCSFFEKQVISFIRQLI-WREFSYYLL 285
Query: 320 FYQP 323
++ P
Sbjct: 286 YHYP 289
>gi|359434961|ref|ZP_09225201.1| deoxyribodipyrimidine photo-lyase [Pseudoalteromonas sp. BSi20652]
gi|357918397|dbj|GAA61450.1| deoxyribodipyrimidine photo-lyase [Pseudoalteromonas sp. BSi20652]
Length = 464
Score = 44.7 bits (104), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 67/295 (22%), Positives = 118/295 (40%), Gaps = 36/295 (12%)
Query: 31 VVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQ 90
++W RD R+ N ALI A++ K+ + V+ + Q A Q+ + R + LQ
Sbjct: 3 TLFWFRRDLRLFSNEALIQALNNGAKHAI-FFVSEKQWQQHQAAPI-QIDLLKRRVTYLQ 60
Query: 91 RNIEETFQILFFLFQGEAEDNIPNFVRECGAS----LLVTDFSPLREIRRCKDKI--CNR 144
+ + L + D + C A+ ++ L E+ R K + C+
Sbjct: 61 SQLADYGITLHIIEAPSFCDCTHELINFCKANSVKHIIANTEYELNEVNRDKAILNRCDE 120
Query: 145 VSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEY----LIDYPMLEQPIEK 200
+S + T++E D + PV S K ++ K+ + L Y + + +
Sbjct: 121 LSITFTLYEGDL--IAPV--------GSVKNQSNEMYKVFTPFKRAWLKQYQNIHFSLPQ 170
Query: 201 WTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLKNYPTDR 260
W T + I +D +++ + C E L D F+ +L +Y R
Sbjct: 171 WPLTSELIKFDE---------SDLLQSDGCSDKWPVDDETLTTVVDNFICDKLTSYDEQR 221
Query: 261 NNPLKPRALSGLSPYLHFGQISAQR--CALEARKARKLCPEAIDTF--LEELIVR 311
+ P + SGLSPYL G +S ++ ++ R L TF + ELI R
Sbjct: 222 DIP-SIKGTSGLSPYLALGIVSTKQLLINIQQRYPDILTTSKSKTFTWINELIWR 275
>gi|449016982|dbj|BAM80384.1| similar to DNA photolyase [Cyanidioschyzon merolae strain 10D]
Length = 690
Score = 44.7 bits (104), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 36/63 (57%), Gaps = 3/63 (4%)
Query: 301 IDTFLEELIVRRELADNFCFYQPNYDSLKGAWE-WARKSLKDHASDKREHI-YTKEQFEK 358
+ F+E + RRELA NF Y YDS GA WAR+SL D AS + H Y++ +
Sbjct: 488 VRKFMENMY-RRELAYNFVMYNKRYDSFDGAVPVWARRSLYDRASRRTSHYQYSETDWYN 546
Query: 359 AQT 361
A+T
Sbjct: 547 ART 549
>gi|302693713|ref|XP_003036535.1| hypothetical protein SCHCODRAFT_49182 [Schizophyllum commune H4-8]
gi|300110232|gb|EFJ01633.1| hypothetical protein SCHCODRAFT_49182 [Schizophyllum commune H4-8]
Length = 587
Score = 44.7 bits (104), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 39/69 (56%), Gaps = 4/69 (5%)
Query: 31 VVYWM-FRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAK---ARQLGFMLRGL 86
VVYWM +D R+ DN AL A +A K P+ + + Q A AR++ FMLR L
Sbjct: 71 VVYWMRMQDMRIEDNRALALASAEAQKTKKPLVAIYVISPQDYAAHDRGARRIDFMLRNL 130
Query: 87 RLLQRNIEE 95
R+++ ++E
Sbjct: 131 RIIKIKLDE 139
>gi|374261679|ref|ZP_09620257.1| deoxyribodipyrimidine photolyase [Legionella drancourtii LLAP12]
gi|363537773|gb|EHL31189.1| deoxyribodipyrimidine photolyase [Legionella drancourtii LLAP12]
Length = 477
Score = 44.7 bits (104), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 35/94 (37%), Positives = 48/94 (51%), Gaps = 13/94 (13%)
Query: 231 ESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRC--AL 288
E GE AM L + F+ L++Y RN+P K A S L+P+LHFG+IS + A+
Sbjct: 197 EPGEHGAMNKL----NFFIEHHLQDYQEARNHPSK-TATSRLAPHLHFGEISPWQVWNAI 251
Query: 289 EARKARKLCP-EAIDTFLEELIVRRELADNFCFY 321
E K + C + D FL EL R F +Y
Sbjct: 252 EEAKLQPKCDLRSADHFLAELGWRE-----FSYY 280
>gi|423384690|ref|ZP_17361946.1| hypothetical protein ICE_02436 [Bacillus cereus BAG1X1-2]
gi|401639360|gb|EJS57099.1| hypothetical protein ICE_02436 [Bacillus cereus BAG1X1-2]
Length = 476
Score = 44.7 bits (104), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 72/339 (21%), Positives = 141/339 (41%), Gaps = 37/339 (10%)
Query: 37 RDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQRNIEET 96
+D R+ DN AL AV +PV + F +G+ A+ ++ ++ +++ +E
Sbjct: 11 KDFRLYDNPALFEAVQSGEV--LPVYIQDETFS--IGSAAK--WWLHHAVKDVKKQLEAL 64
Query: 97 FQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICNRVSD-SVTIHEVD 155
L + +G E+ I + + + + + + + + K+ + D + E +
Sbjct: 65 GSTLI-IRKGRTEEEILSLIEQLDITAVYWNICYDPDRLQSNQKMKMMLEDKGIICKEFN 123
Query: 156 AHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQPIEKWTGTRQSIDWDSIIA 215
+H ++ W+ +K K N + ++ +PI + QSI W + +
Sbjct: 124 SHLLLEPWIIKKKDNTEYKVFTPFYNAFQKQ------VIPKPISR----VQSIKWGNSLP 173
Query: 216 AVLRKGAE--VPEIGWCESGE---DAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALS 270
A L +P I W E D E + F + +L +Y R+ P + S
Sbjct: 174 ASLSVSELHLLPTIPWTSHMEAIWDPTEEGAYKTFKKFFSSKLASYSEGRDFPDQ-NVHS 232
Query: 271 GLSPYLHFGQISAQRC--ALEARKARKLCP---EAIDTFLEELIVRRELADNFCFYQPNY 325
L+PYL FGQIS + L + + C + +++F+ +LI RE + ++ P
Sbjct: 233 MLAPYLSFGQISVKLMFHYLVNKSTERQCSLFEKQVNSFIRQLI-WREFSYYLLYHYPFT 291
Query: 326 DSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADP 364
S KS ++ DK E + + ++K +T P
Sbjct: 292 VSKP-----LNKSFENFPWDKEEELLS--VWQKGETGYP 323
>gi|220934567|ref|YP_002513466.1| Deoxyribodipyrimidine photo-lyase [Thioalkalivibrio sulfidophilus
HL-EbGr7]
gi|219995877|gb|ACL72479.1| Deoxyribodipyrimidine photo-lyase [Thioalkalivibrio sulfidophilus
HL-EbGr7]
Length = 483
Score = 44.7 bits (104), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 55/112 (49%), Gaps = 18/112 (16%)
Query: 224 VPEIGWC-------ESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYL 276
+P+I W + GE A+ L F+ + + +Y RN P + + S LSPYL
Sbjct: 187 LPDIDWAAGFTELWQPGEAGALARLAE----FMDEAVADYDEMRNRPDRDGS-SRLSPYL 241
Query: 277 HFGQISAQRCALEARKAR-----KLCPEAIDTFLEELIVRRELADNFCFYQP 323
HFG+I ++ A + A+ K + ID+FL E I RE A + ++ P
Sbjct: 242 HFGEIGPRQAAAACQVAKDRHGGKAAHQGIDSFLRE-IGWREFAHHLLYHFP 292
>gi|406832861|ref|ZP_11092455.1| hypothetical protein SpalD1_14519 [Schlesneria paludicola DSM
18645]
Length = 511
Score = 44.3 bits (103), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 80/321 (24%), Positives = 126/321 (39%), Gaps = 42/321 (13%)
Query: 23 SLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFM 82
SLD P + W D R++D AL+ AV + + +PV + D A ++
Sbjct: 27 SLDTMTHPSLVWFRHDLRLQDQPALVAAVARG-EPVIPVYIWSPDEDGDWPPGAASRWWL 85
Query: 83 LRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLL--VTDFSP--LREIRRCK 138
L L +EE L + QG A + + + + GA + + P ++ R K
Sbjct: 86 HHSLHQLNEQLEELGSRLI-IRQGNALTELLSLIDDTGADAVYWTRRYEPAAIQRDSRVK 144
Query: 139 DKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYP------ 192
++ R +V + + W K + L + D P
Sbjct: 145 TELRQR---NVLAQSFNGQLLFEPWQIETKQGRPYQVFTAFWKTCLTQRTPDEPEPAPSD 201
Query: 193 -MLEQPIEKWT-----GTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKD 246
+ +P K R +I WD+ A VP GE AA + L
Sbjct: 202 FLSPRPWPKSAKLNDLSLRPTIAWDTGFAERW-----VP-------GEKAARQELHR--- 246
Query: 247 GFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEA-RKARKLC--PEAIDT 303
FL + +Y T R+ P S LSP+LHFG+IS + E R+ R+ P + +T
Sbjct: 247 -FLESPVFDYVTMRDLPAL-HGTSRLSPHLHFGEISPRTIWHETQRRLRQHSQDPTSAET 304
Query: 304 FLEELIVRRELADNFCFYQPN 324
FL+E + RE A + F+ PN
Sbjct: 305 FLKE-VGWREFAHHLLFHFPN 324
>gi|387887266|ref|YP_006317565.1| deoxyribodipyrimidine photo-lyase [Francisella noatunensis subsp.
orientalis str. Toba 04]
gi|386872082|gb|AFJ44089.1| deoxyribodipyrimidine photo-lyase [Francisella noatunensis subsp.
orientalis str. Toba 04]
Length = 464
Score = 44.3 bits (103), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 53/107 (49%), Gaps = 17/107 (15%)
Query: 225 PEIGW------CESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHF 278
P++ W + GEDA+ ++L + FL ++K Y T R+ + + S LSPYLHF
Sbjct: 184 PKLSWQNIIDQWQIGEDASHQIL----EEFLDNKVKEYKTARD-FMSTDSTSKLSPYLHF 238
Query: 279 GQISAQRCALEARKARKLCPEAIDTFLEELIVRRELADNFCFYQPNY 325
G+IS + A + F++EL+ R +F +YQ Y
Sbjct: 239 GEISPNQI-FNAVQNLDYIGNNEKHFIKELVWR-----DFSYYQIYY 279
>gi|347760850|ref|YP_004868411.1| deoxyribodipyrimidine photo-lyase [Gluconacetobacter xylinus NBRC
3288]
gi|347579820|dbj|BAK84041.1| deoxyribodipyrimidine photo-lyase [Gluconacetobacter xylinus NBRC
3288]
Length = 466
Score = 44.3 bits (103), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 69/296 (23%), Positives = 117/296 (39%), Gaps = 31/296 (10%)
Query: 28 RGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLR 87
R P V W D R+ DN AL A Q PV + + D A + ++ L
Sbjct: 4 RAPTVMWFRDDLRLADNPALTDAATQG-----PV-ICLYVHDPAFALGAAERWWLHDALT 57
Query: 88 LLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICNRVSD 147
L ++ L + +G A+ + ++ GA+ +V + R ++ +
Sbjct: 58 ALDHDLRARGGQLCIM-EGSAQAVVQWLAQQAGATAVVWN----RRYGGPARQVDTDIKT 112
Query: 148 SVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQPIEKWTGTRQS 207
++ + +DA + P + E + +T +G ++ + +E P+ S
Sbjct: 113 ALKVMGIDARSH-PGNMLHEP--WQVRTRQGTPFRVYTPWWRAVQAMEAPLPP-VSVPAS 168
Query: 208 IDWDSIIAAV---------LRKGAEVPEIGWCESGEDA---AMEVLKGSKDGFLTKRLKN 255
+ + S+ AV LR P+ W + D + + D F+ KR+
Sbjct: 169 LTFASLPPAVGEQQLAPSALRLLPTRPD--WAQGLRDTWQPGEQAGQARLDSFVAKRMAG 226
Query: 256 YPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVR 311
Y R+ P +P A S LSPYL FG +S+ R A A K E FL E+ R
Sbjct: 227 YARQRDLPARP-ATSALSPYLRFGHVSS-RQVWHAVAAGKEMDEDGACFLSEVGWR 280
>gi|423528953|ref|ZP_17505398.1| hypothetical protein IGE_02505 [Bacillus cereus HuB1-1]
gi|402449821|gb|EJV81656.1| hypothetical protein IGE_02505 [Bacillus cereus HuB1-1]
Length = 476
Score = 44.3 bits (103), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 73/339 (21%), Positives = 141/339 (41%), Gaps = 37/339 (10%)
Query: 37 RDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQRNIEET 96
+D R+ DN AL AV +PV + F +G+ A+ ++ ++ +++ +E
Sbjct: 11 KDFRLYDNPALFEAVQSGEV--LPVYIQDETFS--IGSAAK--WWLHHAVKDVKKQLEAL 64
Query: 97 FQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICNRVSD-SVTIHEVD 155
L + +G E+ I + + + + + + + + K+ + D + E +
Sbjct: 65 GSTLI-IRKGRTEEEILSLIEQLDITAVYWNICYDPDRVQSNQKMKMMLEDKGIICKEFN 123
Query: 156 AHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQPIEKWTGTRQSIDWDSIIA 215
+H ++ W+ +K K N + ++ +PI K QSI W S +
Sbjct: 124 SHLLLEPWIIKKKDNTEYKVFTPFYNAFQKQ------VIPKPIRK----VQSIKWGSSLP 173
Query: 216 AVLRKGAE--VPEIGWCESGEDAAMEVLKGSKDGF---LTKRLKNYPTDRNNPLKPRALS 270
A L +P I W E +G+ F + +L +Y R+ P + S
Sbjct: 174 ASLSVSELHLLPTIPWTSHMEAIWNPTEEGAYKTFKKFFSSKLVSYSEGRDFPDQ-NVHS 232
Query: 271 GLSPYLHFGQISAQRC--ALEARKARKLCP---EAIDTFLEELIVRRELADNFCFYQPNY 325
L+PYL FGQIS + L + + C + +++F+ +LI RE + ++ P
Sbjct: 233 MLAPYLSFGQISVKLMFHYLINKSTERQCSLFEKQVNSFIRQLI-WREFSYYLLYHYPFT 291
Query: 326 DSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADP 364
S KS ++ DK E + + ++K +T P
Sbjct: 292 VSKP-----LNKSFENFPWDKEEELLS--VWQKGETGYP 323
>gi|434376106|ref|YP_006610750.1| deoxyribodipyrimidine photolyase [Bacillus thuringiensis HD-789]
gi|401874663|gb|AFQ26830.1| deoxyribodipyrimidine photolyase [Bacillus thuringiensis HD-789]
Length = 476
Score = 44.3 bits (103), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 68/302 (22%), Positives = 126/302 (41%), Gaps = 38/302 (12%)
Query: 37 RDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQRNIEET 96
+D R+ DN AL AV +PV V + FL +A + ++ + +++ +E
Sbjct: 11 KDFRLYDNPALFEAVQSGEV--LPVYVQD---EDFLMGEASKW-WLHHAVIDVKKQLEAL 64
Query: 97 FQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICNRVSD-SVTIHEVD 155
L + +G E+ I + + + + + + + + K+ + D + E +
Sbjct: 65 GSTLI-IRKGRTEEEILSLIEQLDITAVYWNICYDPDRLQSNQKMKMMLEDKGIICKEFN 123
Query: 156 AHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQPIEKWTGTRQSIDWDSIIA 215
+H ++ W+ +K K N + ++ +PI K QSI W S +
Sbjct: 124 SHLLLEPWIIKKKDNTEYKVFTPFYNAFQKQ------VIPKPISK----VQSIKWGSSLP 173
Query: 216 AVLRKGAE--VPEIGWC-------ESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKP 266
A L +P I W E E+ A + K F + +L +Y R+ P
Sbjct: 174 ASLSVSELHLLPTIPWTSHIESIWEPTEEGAYKTFKK----FFSSKLASYSEGRDFP-NQ 228
Query: 267 RALSGLSPYLHFGQISAQRC--ALEARKARKLCP---EAIDTFLEELIVRRELADNFCFY 321
A S L+PYL FGQIS + L + + C + +++F+ +LI RE + ++
Sbjct: 229 NAHSMLAPYLSFGQISVKLMYHYLINKSTERQCSLFEKQVNSFIRQLI-WREFSYYLLYH 287
Query: 322 QP 323
P
Sbjct: 288 YP 289
>gi|228966105|ref|ZP_04127168.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar
sotto str. T04001]
gi|402559511|ref|YP_006602235.1| deoxyribodipyrimidine photolyase [Bacillus thuringiensis HD-771]
gi|423359850|ref|ZP_17337353.1| hypothetical protein IC1_01830 [Bacillus cereus VD022]
gi|228793590|gb|EEM41130.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar
sotto str. T04001]
gi|401083011|gb|EJP91275.1| hypothetical protein IC1_01830 [Bacillus cereus VD022]
gi|401788163|gb|AFQ14202.1| deoxyribodipyrimidine photolyase [Bacillus thuringiensis HD-771]
Length = 476
Score = 44.3 bits (103), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 68/302 (22%), Positives = 126/302 (41%), Gaps = 38/302 (12%)
Query: 37 RDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQRNIEET 96
+D R+ DN AL AV +PV V + FL +A + ++ + +++ +E
Sbjct: 11 KDFRLYDNPALFEAVQSGEV--LPVYVQD---EDFLMGEASKW-WLHHAVIDVKKQLEAL 64
Query: 97 FQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICNRVSD-SVTIHEVD 155
L + +G E+ I + + + + + + + + K+ + D + E +
Sbjct: 65 GSTLI-IRKGRTEEEILSLIEQLDITAVYWNICYDPDRLQSNQKMKMMLEDKGIICKEFN 123
Query: 156 AHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQPIEKWTGTRQSIDWDSIIA 215
+H ++ W+ +K K N + ++ +PI K QSI W S +
Sbjct: 124 SHLLLEPWIIKKKDNTEYKVFTPFYNAFQKQ------VIPKPISK----VQSIKWGSSLP 173
Query: 216 AVLRKGAE--VPEIGWC-------ESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKP 266
A L +P I W E E+ A + K F + +L +Y R+ P
Sbjct: 174 ASLSVSELHLLPTIPWTSHIESIWEPTEEGAYKTFKK----FFSSKLASYSEGRDFP-NQ 228
Query: 267 RALSGLSPYLHFGQISAQRC--ALEARKARKLCP---EAIDTFLEELIVRRELADNFCFY 321
A S L+PYL FGQIS + L + + C + +++F+ +LI RE + ++
Sbjct: 229 NAHSMLAPYLSFGQISVKLMYHYLINKSTERQCSLFEKQVNSFIRQLI-WREFSYYLLYH 287
Query: 322 QP 323
P
Sbjct: 288 YP 289
>gi|424865467|ref|ZP_18289332.1| deoxyribodipyrimidine photo-lyase [SAR86 cluster bacterium SAR86B]
gi|400758735|gb|EJP72937.1| deoxyribodipyrimidine photo-lyase [SAR86 cluster bacterium SAR86B]
Length = 471
Score = 44.3 bits (103), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 36/64 (56%), Gaps = 5/64 (7%)
Query: 233 GEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARK 292
GE A VL D FL + +Y +RN+P+K S +SPYL G +S++RC +E+ K
Sbjct: 204 GEKGAKHVL----DDFLKFKASHYDKNRNDPIKDNT-SRISPYLALGILSSKRCIIESIK 258
Query: 293 ARKL 296
L
Sbjct: 259 LNNL 262
>gi|255950764|ref|XP_002566149.1| Pc22g22550 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211593166|emb|CAP99543.1| Pc22g22550 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 581
Score = 44.3 bits (103), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 79/301 (26%), Positives = 133/301 (44%), Gaps = 39/301 (12%)
Query: 23 SLDKKRG-----PVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKAR 77
+ DK+R VV+W D R+ D+ AL A A ++ VP+ + + + A +
Sbjct: 80 TADKRRSINVGSAVVHWFKSDLRLHDSRALYAAYQFAKEHQVPLIGLYVVSPEDWTAHST 139
Query: 78 ---QLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVREC----GASLLVTDFS- 129
++ F LR L+ LQ+++ E I ++ + IPN + E GA L +
Sbjct: 140 SPARVDFTLRTLKRLQQDLGE-LDIPLYMETQDKRKTIPNRIVELCQQWGAKSLYANIEY 198
Query: 130 PLREIRRCKDKICNRVSDSVTIHEVDAHN---VVPVWVASEK-LEYSAKT--LRGKIN-- 181
+ E+RR + K+ +D+ I+ +H+ V P +AS++ +YS T R +
Sbjct: 199 EVDELRR-EAKLVRLCADN-DINFTPSHDTCVVTPGALASQQGKQYSVYTPWYRSWLAFL 256
Query: 182 KLLPEYLIDYPMLEQPIEKWTGTRQSID--WDSIIAAVLRKGAEVPE-----IGWCESGE 234
K P+YL + E+P RQ +D + A + E G +GE
Sbjct: 257 KENPDYL---EVSEEPGSNPGNARQQFKDFFDCNVPAAPNTHILLDEEQKRFEGLYPAGE 313
Query: 235 DAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKAR 294
A++ L D FL ++ K Y R+ L + S LSPY G +SA+ A++
Sbjct: 314 HEALQRL----DNFLEEKGKEYEETRSM-LSGESTSVLSPYFACGALSARTAVATAKRIN 368
Query: 295 K 295
K
Sbjct: 369 K 369
>gi|221134512|ref|ZP_03560817.1| DNA photolyase [Glaciecola sp. HTCC2999]
Length = 487
Score = 44.3 bits (103), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 69/318 (21%), Positives = 125/318 (39%), Gaps = 48/318 (15%)
Query: 31 VVYWMFRDQRVRDNWALIHAVDQANKNN--VPVAVAFNLFDQFLGAKARQLGFMLRGLRL 88
V+ W D R+ DN AL A++ A ++ +P+ + ++ + L
Sbjct: 6 VIMWFRHDLRLNDNPALYRAIELAGEHGTVLPIFIHDTSAPDLAKLGEASQWWLHQSLAS 65
Query: 89 LQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTD--FSPLREIRRCKDKICNRVS 146
L + + Q LFQG+ I + + + A+ ++ + + P + R K +
Sbjct: 66 LSASTGQHLQ----LFQGDPLAIIESLINQYDATHVIWNRGYEPWQITRDSHIKAT--LK 119
Query: 147 DSVTIHEVDAHNVVPVWVASEKLE--------YSAKTLRGKINKLLPEYLIDYPMLEQPI 198
D V + + H + W + L+ ++ +G + + P Y P
Sbjct: 120 DCVEVLSCNGHLL---WEPMQVLKKDNTPYKVFTPYYRKGCLTRSAPRYPESIP------ 170
Query: 199 EKWTGTRQSIDWDSIIAAV-------LRKGAEVPEIGWCESGEDAAMEVLKGSKD---GF 248
+ + W + I + L + +P I W ++ +G+KD +
Sbjct: 171 -------EHLPWATRINSTNIFEPLTLDELKLMPSIQWYDTIAAQWQPGEQGAKDRLATY 223
Query: 249 LTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCP--EAIDTFLE 306
+ + Y DRN P + S LSP+LHFG+IS + A K P E DT+L
Sbjct: 224 IEEAAGRYREDRNLPAV-KGTSLLSPHLHFGEISVNTVWYAIKDAFKDDPENEHADTYLS 282
Query: 307 ELIVRRELADNFCFYQPN 324
EL RE + F+ P+
Sbjct: 283 EL-GWREFSHYLLFHFPH 299
>gi|385332709|ref|YP_005886660.1| deoxyribodipyrimidine photo-lyase [Marinobacter adhaerens HP15]
gi|311695859|gb|ADP98732.1| deoxyribodipyrimidine photo-lyase [Marinobacter adhaerens HP15]
Length = 538
Score = 44.3 bits (103), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 65/276 (23%), Positives = 107/276 (38%), Gaps = 47/276 (17%)
Query: 31 VVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQ 90
V W RD R RD+ L+ A + +P+ V + + Q RQ F+ L
Sbjct: 30 TVVWFKRDLRTRDHAPLVAAAS-LGEPVIPLYVIEDDYWQLPDTSGRQWAFIRDSL---- 84
Query: 91 RNIEETFQILFFLFQGEAEDNIPNFVRECGASLLV-----TDFSPLREIRRCKDKI-CNR 144
D++ +R+ G+ LLV TD + R+ D+I C++
Sbjct: 85 -------------------DDLDRQLRKAGSQLLVIRGSVTDALKKLQARQGIDRIFCHQ 125
Query: 145 VSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPE--------YLIDYPMLEQ 196
+ E D V W + ++E+ G + +L L+ P+LE
Sbjct: 126 ETGGHWTFERD--RAVIGWCSENQVEFREWNQFGVVRRLSDRDVWDRAWTELMRQPVLEA 183
Query: 197 PIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLKNY 256
P T DW AA +G EVP+ C + + + FL +R Y
Sbjct: 184 PTAIPTSDTLKTDW----AADNGQGFEVPDS--CPDRQKGGSARGEKLLESFLDRRCVGY 237
Query: 257 PTDRNNP-LKPRALSGLSPYLHFGQISAQRCALEAR 291
+ ++P RA S LSP++ +G +S + EA+
Sbjct: 238 QYNISSPNTAVRACSRLSPHIAYGTVSLREIYQEAK 273
>gi|365160129|ref|ZP_09356302.1| hypothetical protein HMPREF1014_01765 [Bacillus sp. 7_6_55CFAA_CT2]
gi|363624172|gb|EHL75256.1| hypothetical protein HMPREF1014_01765 [Bacillus sp. 7_6_55CFAA_CT2]
Length = 476
Score = 43.9 bits (102), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 68/303 (22%), Positives = 126/303 (41%), Gaps = 40/303 (13%)
Query: 37 RDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQRNIEET 96
+D R+ DN AL AV +PV V F +G+ A+ ++ + +Q+ ++
Sbjct: 11 KDFRLYDNPALFEAVQSGEV--LPVYVQDETFS--IGSAAK--WWLRHAIMDVQKQLKAL 64
Query: 97 FQILFFLFQGEAEDNIPNFVRECGASLLVTD--FSPLREIRRCKDKICNRVSDSVTIHEV 154
L + +G ++ I + +++ + + + + P R K K+ + E
Sbjct: 65 GSTLI-IRKGNTQEEILSLIKQLDITAVYWNSCYDPDRLKSNQKMKMILE-DKGIICKEF 122
Query: 155 DAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQPIEKWTGTRQSIDWDSII 214
++H ++ W+ +K K N + ++ +PI + QSI W S +
Sbjct: 123 NSHLLLEPWIIKKKDNTEYKVFTPFYNAFQKQ------VIPKPISR----VQSIKWGSSL 172
Query: 215 AAVLRKGAE--VPEIGWC-------ESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLK 265
A L +P I W E E+ A + K F + +L +Y R+ P
Sbjct: 173 PASLSVSELHLLPTIPWTSHMEAIWEPTEEGAYKTFKK----FFSSKLASYSEGRDFP-N 227
Query: 266 PRALSGLSPYLHFGQISAQRC--ALEARKARKLCP---EAIDTFLEELIVRRELADNFCF 320
A S L+PYL FGQIS + L + + C + + +F+ +LI RE + +
Sbjct: 228 QNAHSMLAPYLSFGQISVKLMYHYLINKSTERQCSFFEKQVISFIRQLI-WREFSYYLLY 286
Query: 321 YQP 323
+ P
Sbjct: 287 HYP 289
>gi|228986230|ref|ZP_04146370.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar
tochigiensis BGSC 4Y1]
gi|228773492|gb|EEM21918.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar
tochigiensis BGSC 4Y1]
Length = 476
Score = 43.9 bits (102), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 66/304 (21%), Positives = 121/304 (39%), Gaps = 42/304 (13%)
Query: 37 RDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQRNIEET 96
+D R+ DN AL A + ++D+ + ++ + ++R +E
Sbjct: 11 KDFRLYDNPALFEAAQSGE------VLPLYVYDETFSIGSASKWWLHHTIIDVKRQLEAL 64
Query: 97 FQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICNRVSD-SVTIHEVD 155
L + +G + I + + + G + + + + + K+ + D + E +
Sbjct: 65 GSTLI-IRKGNTMEEILSLIEQLGMTAVYWNICYDPDRLQSNQKMKMMLEDKGIICKEFN 123
Query: 156 AHNVVPVWVASEK--LEYSAKTLRGKINKLLPEYLIDYPMLEQPIEKWTGTRQSIDWDSI 213
+H ++ W+ +K EY T P Y + +Q I K QSI W S
Sbjct: 124 SHLLLEPWIIKKKDNTEYKVFT---------PFY---HAFQKQVISKPISKVQSIKWGSS 171
Query: 214 IAAVLRKGAE--VPEIGWC-------ESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPL 264
+ A L +P I W E E+ A + K F + +L +Y R+ P
Sbjct: 172 LPASLSVSELHLLPTIPWTSHMESIWEPTEEGAYKTFKK----FFSSKLVSYSEGRDFP- 226
Query: 265 KPRALSGLSPYLHFGQISAQRC--ALEARKARKLCP---EAIDTFLEELIVRRELADNFC 319
A S L+PYL FGQIS + L + K C + +++F+ + I RE +
Sbjct: 227 NQNAHSMLAPYLSFGQISVKLIYHYLINKSNEKQCSLFEQQVNSFIRQFI-WREFSYYLL 285
Query: 320 FYQP 323
++ P
Sbjct: 286 YHYP 289
>gi|254448088|ref|ZP_05061551.1| deoxyribodipyrimidine photolyase [gamma proteobacterium HTCC5015]
gi|198262214|gb|EDY86496.1| deoxyribodipyrimidine photolyase [gamma proteobacterium HTCC5015]
Length = 486
Score = 43.9 bits (102), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 69/273 (25%), Positives = 110/273 (40%), Gaps = 38/273 (13%)
Query: 31 VVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFD--QFL--GAKARQLGFMLRGL 86
+ W D R DN AL A +QAN N+P+ +AF + Q+L A Q+ F+LR L
Sbjct: 7 LAVWFRSDLRCHDNRALSRAAEQANAQNLPL-IAFYIATPKQWLEHDVSALQVDFILRHL 65
Query: 87 RLLQRNIEETFQILFFLFQGEAEDNIPNFVRE-CG----ASLLVTDFSPLREIRRCKDKI 141
+LQ + +QI F ++ + +P + E C L P+ EI+R +
Sbjct: 66 PILQTQLAR-YQIPFRVWVCDDFSQVPELLLEQCQNWNIQQLFANREYPVNEIQRDQRVA 124
Query: 142 CNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEY------------LI 189
S S+ H D ++ S +T +G K+ + +
Sbjct: 125 RTLESTSIETHFFDDFTLL--------APGSVRTGQGDPYKVFTPFKKQCFKQLQEADIA 176
Query: 190 DYPMLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFL 249
+ P E + QS +S+ + E W +GE AA+E L + F
Sbjct: 177 EAPTARIEAEAPSHFAQSPP-ESLADFAPHLDTKTLEHLW-PAGESAALERL----ETFA 230
Query: 250 TKRLKNYPTDRNNPLKPRALSGLSPYLHFGQIS 282
RL +Y R+ P + S +S YL G +S
Sbjct: 231 EHRLHHYQQRRDYP-NAKGTSAISAYLAIGSLS 262
>gi|118497711|ref|YP_898761.1| deoxyribodipyrimidine photolyase [Francisella novicida U112]
gi|194323683|ref|ZP_03057459.1| deoxyribodipyrimidine photolyase family protein [Francisella
novicida FTE]
gi|208779776|ref|ZP_03247120.1| deoxyribodipyrimidine photolyase family protein [Francisella
novicida FTG]
gi|118423617|gb|ABK90007.1| deoxyribodipyrimidine photolyase [Francisella novicida U112]
gi|194322047|gb|EDX19529.1| deoxyribodipyrimidine photolyase family protein [Francisella
tularensis subsp. novicida FTE]
gi|208744231|gb|EDZ90531.1| deoxyribodipyrimidine photolyase family protein [Francisella
novicida FTG]
Length = 464
Score = 43.9 bits (102), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 49/93 (52%), Gaps = 11/93 (11%)
Query: 233 GEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARK 292
GE A+ ++L + FL ++K Y T R+ + + S LSPYLHFG+IS + A +
Sbjct: 198 GESASHQIL----EEFLNNKVKEYKTARD-FMSTDSTSKLSPYLHFGEISPSQI-FNAVQ 251
Query: 293 ARKLCPEAIDTFLEELIVRRELADNFCFYQPNY 325
+ + F++EL+ R +F +YQ Y
Sbjct: 252 SLDYIGNNEEHFIKELVWR-----DFSYYQIYY 279
>gi|396469420|ref|XP_003838401.1| hypothetical protein LEMA_P113370.1 [Leptosphaeria maculans JN3]
gi|312214969|emb|CBX94922.1| hypothetical protein LEMA_P113370.1 [Leptosphaeria maculans JN3]
Length = 633
Score = 43.9 bits (102), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 73/279 (26%), Positives = 113/279 (40%), Gaps = 31/279 (11%)
Query: 31 VVYWMF-RDQRVRDNWALIHAVDQANKNN---VPVAVAFNLFDQFLGAKARQLGFMLRGL 86
V +W +D R++DN AL HA A KN V V V + + G A ++ FM GL
Sbjct: 147 VAHWFHPKDLRIQDNTALHHASQLAQKNKQHLVCVYVNCAADESWHGTSAARVDFMYEGL 206
Query: 87 RLLQRNIEETFQILFFLFQGEAEDNIPNFV---RECGASLLVTDFS-PLREIRRCKDKIC 142
+L+Q+ +++ L FL +D + + +E G S + + + EIRR K+
Sbjct: 207 KLIQKELKDLNIPLVFLECENRKDIVSTVISWFKEQGVSHVFGNIEYEIDEIRR-DIKLV 265
Query: 143 NRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLR--GKINKLLPEYLIDYPML--EQPI 198
+ D + +V H+ V L S K ++ K + + D P L P
Sbjct: 266 KTIGDDI---QVSLHHDQTVVEPGTMLTGSGKPMKIFTPYFKAWLDIVKDQPSLLDTNPP 322
Query: 199 EKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGED---------AAMEVLKGSKDGFL 249
D +S+ + A+ + E+ ED D FL
Sbjct: 323 PAVNPASAKQDLESLFDTPAPRPAKDKQF---ENDEDKKRIRKFWPPGYTAASTRMDKFL 379
Query: 250 TKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCAL 288
K + NY R++P K + S LSPY G S R AL
Sbjct: 380 -KHIPNYAATRSDPSK-DSTSRLSPYFSAGMYSV-RSAL 415
>gi|293609792|ref|ZP_06692094.1| deoxyribodipyrimidine photolyase [Acinetobacter sp. SH024]
gi|427424953|ref|ZP_18915065.1| FAD binding domain of DNA photolyase [Acinetobacter baumannii
WC-136]
gi|292828244|gb|EFF86607.1| deoxyribodipyrimidine photolyase [Acinetobacter sp. SH024]
gi|425698270|gb|EKU67914.1| FAD binding domain of DNA photolyase [Acinetobacter baumannii
WC-136]
Length = 480
Score = 43.9 bits (102), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 49/102 (48%), Gaps = 9/102 (8%)
Query: 214 IAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLS 273
I A + G +GE+ A+E L D F+ RL +Y +R+ P R S LS
Sbjct: 197 IEAFFDPSVSKEQQGLWPAGENFALEQL----DIFIKDRLSDYKLERDFP-NVRGTSQLS 251
Query: 274 PYLHFGQISAQRCALEARKAR----KLCPEAIDTFLEELIVR 311
PYL+ G +S ++C +A L E T+L+ELI R
Sbjct: 252 PYLNIGILSIRQCLQALFRAEHGNFHLTNEGQQTWLDELIWR 293
>gi|429099734|ref|ZP_19161840.1| Deoxyribodipyrimidine photolyase [Cronobacter dublinensis 582]
gi|426286074|emb|CCJ87953.1| Deoxyribodipyrimidine photolyase [Cronobacter dublinensis 582]
Length = 473
Score = 43.9 bits (102), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 85/324 (26%), Positives = 129/324 (39%), Gaps = 44/324 (13%)
Query: 34 WMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQRNI 93
W D RV DN AL A + + + +A + RQ F+ + L LQ+ +
Sbjct: 7 WFRADLRVFDNLALAAACRDPDARVIGLFIATPQQWRDHTLAPRQAAFIWQNLEALQQAL 66
Query: 94 EETFQILFFLFQGEAED------NIPNFVRECGASLLVTDFS-PLREIRRCKDKICNRVS 146
+ LF EA D + F E S L ++ L E RR + R++
Sbjct: 67 AKRG---IPLFTREAHDFAAAVETLATFCDEHQVSALFYNYQYELNEARR-DAAVERRLA 122
Query: 147 DSVTIHEVDAHNVVP---VWVASEKL-----EYSAKTLRGKINKLLPEYLIDYPMLEQPI 198
+ V D ++P V S ++ YS LR ++ + LP P + P
Sbjct: 123 ERVACQGFDDSVMLPPGSVVTGSGEMYKVFTPYSRAFLR-RLGEGLP------PCVNAPK 175
Query: 199 EKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLKNYPT 258
+ G D A E P+ +GE+AA++ L+ F +YP
Sbjct: 176 PRPGGAIS----DVPALAPFDYPCETPDALLFPAGEEAALQRLRE----FCQTAAGDYPE 227
Query: 259 DRNNPLKPRALSGLSPYLHFGQISAQRCA--LEARKARKLCPEAIDTFLEELIVR---RE 313
R+ P R S LSPYL G +S ++C L A R L ++ +L ELI R R
Sbjct: 228 KRDFPAI-RGTSLLSPYLAIGVLSPRQCLHRLLAEHPRALEGDSGAVWLNELIWREFYRH 286
Query: 314 LA---DNFCFYQPNYD-SLKGAWE 333
L C +QP D + + AW+
Sbjct: 287 LIVAWPRLCRHQPFVDWTARVAWQ 310
>gi|260809703|ref|XP_002599644.1| hypothetical protein BRAFLDRAFT_205790 [Branchiostoma floridae]
gi|229284925|gb|EEN55656.1| hypothetical protein BRAFLDRAFT_205790 [Branchiostoma floridae]
Length = 289
Score = 43.9 bits (102), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 37/152 (24%), Positives = 69/152 (45%), Gaps = 29/152 (19%)
Query: 36 FRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRG-----LRLLQ 90
F+ Q W+L AV++A + +P+ + G ++L ++LR + +LQ
Sbjct: 97 FKGQTYTGYWSLCAAVNRAMEEGIPITNP----GYYAGMTEKELAYLLRSDSDTDMPMLQ 152
Query: 91 R---NIEETFQILFFLFQGEAEDNIPNFVRECGA------SLLVTDFSPLREIRRCKDKI 141
N++E ++L F G + N +R+CG SL+V++FS R+ + KDK
Sbjct: 153 ERVNNLQEAGKVLKEKFDG----SFVNCIRKCGGSSQKLLSLVVSNFSSYRDEAKYKDK- 207
Query: 142 CNRVSDSVTIHEVDAHNVVPVWVASEKLEYSA 173
+V I++ + +W E Y +
Sbjct: 208 ------TVAIYKRAQILIADIWSCFEGQGYGS 233
>gi|376283622|ref|YP_005156832.1| putative riboflavin biosynthesis
diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Corynebacterium diphtheriae 31A]
gi|371577137|gb|AEX40805.1| putative riboflavin biosynthesis protein [Corynebacterium
diphtheriae 31A]
Length = 446
Score = 43.9 bits (102), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 70/278 (25%), Positives = 101/278 (36%), Gaps = 54/278 (19%)
Query: 30 PVVYWMFRDQRVRDNWALIHAVDQANKNNV---PVAVAFNLFDQFLGAKAR---QLGFML 83
PVV W D RV DN AL+ A + N V +A + + LG + +
Sbjct: 4 PVVVWFRDDLRVHDNPALMKAWELVRANPADLHAVYIANEVGVRPLGGAVKWWLHHSLLA 63
Query: 84 RGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICN 143
+L QR + + G+ +P V CGA+ + + R D
Sbjct: 64 LSEQLAQRGVR------LHVLSGDPLTLLPQLVTSCGATAVT--------MNRRYDPAAR 109
Query: 144 RVSDSVTIHEVDAHNV----VPVWVASEKLEYSAKT-------------LRGKINKLLPE 186
+ D+ + + AH V P + +E E + T LR I L +
Sbjct: 110 SIDDAF-VADASAHGVEVYDFPCHLLAEPGEITTTTGGSYKVFTPFSRNLRDAIGDLPLD 168
Query: 187 YLIDYPMLEQPIE--KWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGS 244
L P QPI+ + + WD+ AA + K GE AA E L
Sbjct: 169 TLAAPPKSAQPIDDRETQAAIADLGWDAWWAASISKA--------WTPGEPAAREALAE- 219
Query: 245 KDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQIS 282
L L Y DR+ P S LSP L FG++S
Sbjct: 220 ----LDDILPRYLEDRDRP-DIDGTSRLSPRLRFGELS 252
>gi|452844325|gb|EME46259.1| hypothetical protein DOTSEDRAFT_42802 [Dothistroma septosporum
NZE10]
Length = 598
Score = 43.9 bits (102), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 64/138 (46%), Gaps = 9/138 (6%)
Query: 31 VVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNL----FDQFLGAKARQLGFMLRGL 86
VV+W RD R+ DN AL A ++A NVP+ F + + L + AR + F LR L
Sbjct: 97 VVHWFKRDLRLFDNKALHLASEKAKSKNVPLVCVFVVSPQDYQAHLTSPAR-VDFELRSL 155
Query: 87 RLLQRNIEETFQILFFLFQGEAEDNIPNFVREC---GASLLVTDFS-PLREIRRCKDKIC 142
++++++ L+ + D IP + +C GA L + + E+RR +
Sbjct: 156 EIMKQDLAGLDIPLYMTTIEDRRDVIPKILSKCAEWGAKHLFCNIEYEVDELRRETKLVK 215
Query: 143 NRVSDSVTIHEVDAHNVV 160
+ + I V ++V
Sbjct: 216 AGLKQGIAIEAVHDDSIV 233
>gi|238028072|ref|YP_002912303.1| deoxyribodipyrimidine photolyase [Burkholderia glumae BGR1]
gi|237877266|gb|ACR29599.1| Deoxyribodipyrimidine photolyase [Burkholderia glumae BGR1]
Length = 489
Score = 43.9 bits (102), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 45/82 (54%), Gaps = 6/82 (7%)
Query: 246 DGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEA----I 301
+ FL K+++ Y R+ P +P A S LSPYL FGQ+SA++ A+ A + A I
Sbjct: 225 EAFLDKQIRGYGDARDRPDRP-ATSRLSPYLRFGQLSARQVWHAAQAAGREGGAAVAADI 283
Query: 302 DTFLEELIVRRELADNFCFYQP 323
+ FL EL RE + ++ P
Sbjct: 284 EKFLSELGW-REFNTSLLYHFP 304
>gi|91977566|ref|YP_570225.1| deoxyribodipyrimidine photolyase [Rhodopseudomonas palustris BisB5]
gi|91684022|gb|ABE40324.1| Deoxyribodipyrimidine photo-lyase type I [Rhodopseudomonas
palustris BisB5]
Length = 487
Score = 43.9 bits (102), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 90/341 (26%), Positives = 137/341 (40%), Gaps = 49/341 (14%)
Query: 30 PVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFD----QFLGAKARQLG----- 80
PV+ W D R+ D+ A+ QA + P+ + +FD Q +AR LG
Sbjct: 8 PVIVWFRDDLRLSDH----PALHQAAASGGPL-ICIYVFDEDSAQLRSPQARPLGGASRW 62
Query: 81 FMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLV---TDFSPLREIRRC 137
++ + LR L ++E+ L L +G A I R+ AS + + +P R
Sbjct: 63 WLAQSLRALAASLEKRGARLI-LRRGPAAAIIAELARQVDASAVHWNEIEIAPHR----- 116
Query: 138 KDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEY-----LIDYP 192
+ + +++++++ +D H +AS E K RG + P + L D P
Sbjct: 117 --AVADDLAEALSVAGIDHHRHRGDLLASPA-EVRTKEGRG-LRVFTPFWRRVLGLGDPP 172
Query: 193 MLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCES---GEDAAMEVLKGSKDGFL 249
L P K Q D + + +L G ES GE AA + L D
Sbjct: 173 KL-LPAPKTLSAAQGPSGDQLDSWMLEPTEPDWAGGLRESWTPGEGAAQDNLTAFLDA-- 229
Query: 250 TKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKA---RKLCPEAIDTFLE 306
L Y R+ P A S LSP+L FG+IS ++ AR A R ID FL
Sbjct: 230 ---LPGYTEGRDRP-DCAATSRLSPHLRFGEISPRQVWYAARFAAAERPAIAGDIDKFLS 285
Query: 307 EL----IVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHA 343
EL R L D+ + N + A+ W + HA
Sbjct: 286 ELGWREFCRHLLHDHPDLAERNLQASFDAFPWITDAAALHA 326
>gi|332535427|ref|ZP_08411214.1| deoxyribodipyrimidine photolyase [Pseudoalteromonas haloplanktis
ANT/505]
gi|332035151|gb|EGI71663.1| deoxyribodipyrimidine photolyase [Pseudoalteromonas haloplanktis
ANT/505]
Length = 464
Score = 43.9 bits (102), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 60/268 (22%), Positives = 106/268 (39%), Gaps = 24/268 (8%)
Query: 31 VVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQ 90
++W RD R+ N ALI A++ K+ + V+ + Q A Q+ + R + LQ
Sbjct: 3 TLFWFRRDLRLFSNEALIQALNNGAKHAI-FFVSEKQWQQHQAAPI-QIDLLKRRVAYLQ 60
Query: 91 RNIEETFQILFFLFQGEAEDNIPNFVRECGAS----LLVTDFSPLREIRRCKDKI--CNR 144
+ + L + D + C A+ ++ L E+ R K + C+
Sbjct: 61 SQLADYGITLHIIEAPSFCDCTRELINFCKANDVKHVIANTEYELNEVNRDKAILHECDE 120
Query: 145 VSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQPIEKWTGT 204
+S + T++E D + PV + K L +Y + L Q W T
Sbjct: 121 LSITFTLYEGDL--IAPVGTVKNQSNEMYKVFTPFKRAWLKQYQDTHFSLPQ----WPLT 174
Query: 205 RQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPL 264
I++D + +L+ C E L D F+ +L +Y R+ P
Sbjct: 175 SDPIEFDE--SDLLKSDG-------CSDKWPVDDETLSTVVDNFICDKLTSYDDQRDIP- 224
Query: 265 KPRALSGLSPYLHFGQISAQRCALEARK 292
+ SGLSPYL G +S ++ + ++
Sbjct: 225 SVKGTSGLSPYLALGIVSTKQLLINIQQ 252
>gi|433647152|ref|YP_007292154.1| deoxyribodipyrimidine photolyase [Mycobacterium smegmatis JS623]
gi|433296929|gb|AGB22749.1| deoxyribodipyrimidine photolyase [Mycobacterium smegmatis JS623]
Length = 426
Score = 43.5 bits (101), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 76/296 (25%), Positives = 113/296 (38%), Gaps = 54/296 (18%)
Query: 30 PVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKA--RQLGFMLRGLR 87
P + W RD R+ D L+ A A+ V +A L D L A A R+L ++ LR
Sbjct: 2 PTLLWFRRDLRLHDLPPLLDAA--ASDGEV---LACYLLDPRLTASAGPRRLQYLYDALR 56
Query: 88 LLQRNIEETFQILFFLFQGEAEDNIPNFVRECGAS--LLVTDFSPLREIRRCKDKICNRV 145
L +++ + +G E IP +E GAS + D+SP R +D
Sbjct: 57 DLHESLDGRLHVT----RGRPEKVIPKLAKEIGASSVHVSADYSPF---GRRRDVAVRSA 109
Query: 146 SDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQPIEKW--TG 203
V + E + P V+ ++ S T Y + + W G
Sbjct: 110 LGDVALEEAGS----PYLVSPGRVAKSDGT--------------PYKVFTPFFDAWRRHG 151
Query: 204 TRQSIDWDS-----IIAAVLRKGAEVPEIGW---CESGEDAAMEVLKGSKDGFLTKRLKN 255
R D D+ I A L G +P+ G +GE AA + DG L++
Sbjct: 152 WRPPADSDANSARWIEPADLPGGVNIPDSGVELELPAGETAARKQWARFVDG----GLED 207
Query: 256 YPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVR 311
Y DR+ P A S +S +L FG I + A + + FL EL R
Sbjct: 208 YADDRDRP-DLDATSRMSAHLKFGTIHPRTMAADVNSGK-----GAQAFLRELAFR 257
>gi|238612106|ref|XP_002398132.1| hypothetical protein MPER_01320 [Moniliophthora perniciosa FA553]
gi|215474046|gb|EEB99062.1| hypothetical protein MPER_01320 [Moniliophthora perniciosa FA553]
Length = 228
Score = 43.5 bits (101), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 42/79 (53%), Gaps = 5/79 (6%)
Query: 13 PGRIRVLKQGSLDKKRGP-VVYWM-FRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQ 70
P ++ +K G + +G VVYWM D R+ DN AL A QA + N+P+ V F + Q
Sbjct: 18 PKLLQAVKDGVKNPNKGECVVYWMRMADLRISDNRALSLASAQAKEENIPLVVIFVISPQ 77
Query: 71 FLGAK---ARQLGFMLRGL 86
A AR++ F LR L
Sbjct: 78 DYIAHDRGARRIDFTLRNL 96
>gi|384181025|ref|YP_005566787.1| deoxyribodipyrimidine photolyase family protein [Bacillus
thuringiensis serovar finitimus YBT-020]
gi|324327109|gb|ADY22369.1| deoxyribodipyrimidine photolyase family protein [Bacillus
thuringiensis serovar finitimus YBT-020]
Length = 476
Score = 43.5 bits (101), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 69/298 (23%), Positives = 125/298 (41%), Gaps = 30/298 (10%)
Query: 37 RDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQRNIEET 96
+D R+ DN AL A VPV V F +G+ ++ ++ + +QR +E
Sbjct: 11 KDFRLYDNPALFEAAQSGEV--VPVYVHDETFS--IGSASK--WWLHHAIIDVQRQLEAV 64
Query: 97 FQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICNRVSD-SVTIHEVD 155
L + +G + I + +++ G + + + E + K+ + D +T E +
Sbjct: 65 GSTLI-IRKGNILEEILSLIKQLGITAVYWNICYDPERLQFNQKMKMMLEDKGITCKEFN 123
Query: 156 AHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQPIEKWTGTRQSIDWDSIIA 215
+H ++ WV +K K N + ++ +PI K Q I + +
Sbjct: 124 SHLLLEPWVIKKKDNTEYKVFTPFYNAFQKQ------IVPKPISK----VQRIKGGNSLP 173
Query: 216 AVLRKGAE--VPEIGWC---ESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALS 270
A L +P I W ES D E + F + +L +Y R+ P A S
Sbjct: 174 ASLSVSELHLLPTIRWTTHMESIWDPTEEGAYKTCKKFFSSKLASYSEGRDFP-NENAHS 232
Query: 271 GLSPYLHFGQISAQ---RCALEARKARK--LCPEAIDTFLEELIVRRELADNFCFYQP 323
L+PYL FGQIS + ++ R+ L + +++F+ +LI RE + ++ P
Sbjct: 233 MLAPYLSFGQISVKWMYHYLIDKSTERQCSLFEKQVNSFIRQLI-WREFSYYLLYHYP 289
>gi|254877189|ref|ZP_05249899.1| deoxyribodipyrimidine photolyase [Francisella philomiragia subsp.
philomiragia ATCC 25015]
gi|254843210|gb|EET21624.1| deoxyribodipyrimidine photolyase [Francisella philomiragia subsp.
philomiragia ATCC 25015]
Length = 464
Score = 43.5 bits (101), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 54/107 (50%), Gaps = 17/107 (15%)
Query: 225 PEIGW------CESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHF 278
P++ W + GEDA+ ++L + FL ++K Y R+ + + S LSPYLHF
Sbjct: 184 PKLSWQNIIDQWQIGEDASHQIL----EEFLDGKVKEYKIARDF-MSTDSTSKLSPYLHF 238
Query: 279 GQISAQRCALEARKARKLCPEAIDTFLEELIVRRELADNFCFYQPNY 325
G+IS + A ++ + F++EL+ R +F +YQ Y
Sbjct: 239 GEISPNQI-FNAVQSLDYIGNNEEHFIKELVWR-----DFSYYQIYY 279
>gi|254283655|ref|ZP_04958623.1| deoxyribodipyrimidine photo-lyase [gamma proteobacterium NOR51-B]
gi|219679858|gb|EED36207.1| deoxyribodipyrimidine photo-lyase [gamma proteobacterium NOR51-B]
Length = 477
Score = 43.5 bits (101), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 47/91 (51%), Gaps = 13/91 (14%)
Query: 233 GEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARK 292
GE+ A L D FL +K+Y R+ P + S LSP+L FG+IS ++ A+
Sbjct: 204 GEEGATRRL----DDFLAGTVKHYGDGRDIPAEAYT-SRLSPHLKFGEISPRQIWHAAQY 258
Query: 293 ARKLCPEA---IDTFLEELIVRRELADNFCF 320
A++ PEA ID FL E+ R FC+
Sbjct: 259 AKQRLPEAAESIDKFLSEIGWR-----EFCY 284
>gi|241204354|ref|YP_002975450.1| deoxyribodipyrimidine photo-lyase [Rhizobium leguminosarum bv.
trifolii WSM1325]
gi|240858244|gb|ACS55911.1| Deoxyribodipyrimidine photo-lyase [Rhizobium leguminosarum bv.
trifolii WSM1325]
Length = 482
Score = 43.5 bits (101), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 76/340 (22%), Positives = 123/340 (36%), Gaps = 63/340 (18%)
Query: 30 PVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLL 89
PV+ W +D R+ DN AL A ++ + +P+ + A Q ++ L L
Sbjct: 8 PVILWFRKDLRLDDNQALT-AAHRSGRPIIPLYIREPAAAGTGPLGAAQAWWLHHSLEAL 66
Query: 90 QRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTD--FSPLR--------------- 132
R++++ L L GEA + + F++E A + + + P
Sbjct: 67 NRSLQKLNGRLV-LASGEALEVLCAFIKESAAEAVFWNRRYDPAGISIDARIKHELEKQA 125
Query: 133 -EIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDY 191
E R ++ + S +T + P W A LE + PE +D
Sbjct: 126 IEARSFGGQLLHEPSRLMTGNGTPYRVYTPFWRA---LEGGGE----------PEPPLDA 172
Query: 192 P----MLEQP----IEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKG 243
P + QP + W DW + G E G + V
Sbjct: 173 PAKLRLASQPKSEVLGSWKLLPTKPDWAGDFVDLWTPG---------EEGAQQRLHV--- 220
Query: 244 SKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDT 303
F+ L+ Y +R+ P +P A S LSP+L G+IS R R + P A
Sbjct: 221 ----FVEDALEGYKENRDYPARP-ATSMLSPHLALGEISPARIWDATRGLSQRVPAADIV 275
Query: 304 FLEELIVRRELADNFCFYQP-----NYDSLKGAWEWARKS 338
E I RE + + F+ P N++ +EW S
Sbjct: 276 HFREEIAWREFSYHLLFHFPRLASANWNDRFDGFEWRNNS 315
>gi|254374529|ref|ZP_04990010.1| deoxyribodipyrimidine photolyase [Francisella novicida GA99-3548]
gi|385793100|ref|YP_005826076.1| hypothetical protein [Francisella cf. novicida Fx1]
gi|151572248|gb|EDN37902.1| deoxyribodipyrimidine photolyase [Francisella novicida GA99-3548]
gi|332678425|gb|AEE87554.1| Deoxyribodipyrimidine photolyase [Francisella cf. novicida Fx1]
Length = 464
Score = 43.5 bits (101), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 49/93 (52%), Gaps = 11/93 (11%)
Query: 233 GEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARK 292
GE A+ ++L + FL ++K Y T R+ + + S LSPYLHFG+IS + A +
Sbjct: 198 GESASHQIL----EEFLDNKVKEYKTARD-FMSTDSTSKLSPYLHFGEISPNQI-FNAVQ 251
Query: 293 ARKLCPEAIDTFLEELIVRRELADNFCFYQPNY 325
+ + F++EL+ R +F +YQ Y
Sbjct: 252 SLDYIGNNEEHFIKELVWR-----DFSYYQIYY 279
>gi|384918306|ref|ZP_10018388.1| deoxyribodipyrimidine photo-lyase [Citreicella sp. 357]
gi|384467791|gb|EIE52254.1| deoxyribodipyrimidine photo-lyase [Citreicella sp. 357]
Length = 473
Score = 43.5 bits (101), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 71/321 (22%), Positives = 126/321 (39%), Gaps = 42/321 (13%)
Query: 30 PVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLL 89
P++ W+ RD R+ D+ AL A + +PV + + D A +LG GL +
Sbjct: 6 PILVWIRRDLRLTDHAALSKAAGM-GRPVIPVFIRDHTVDALGAAPKWRLGL---GLAVY 61
Query: 90 QRNIEETFQILFFLFQGEAEDNIPNFVRECGASLL----VTDFSPLREIRRCKDKICNRV 145
+ L L G A + + + E GA + D + KD + R
Sbjct: 62 ADRLAAMGSALV-LRAGPAREVLERLLDETGADTVYWQRAYDPDSVERDTAVKDALRAR- 119
Query: 146 SDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYL--IDYPMLEQPI----- 198
V H + W + +T +G K+ Y + + + +P+
Sbjct: 120 --GVEAQSFAGHLLFEPW--------TVETRQGGYYKVYSPYWRAVQHRGVARPLSAPAE 169
Query: 199 ----EKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLK 254
W + + DW + A +R+GA V + + GE AA + L F +
Sbjct: 170 LSAPHTWPTSERLDDWQ--LGAQMRRGAAV-AAPYQQVGEQAAQDRLAS----FARDAIA 222
Query: 255 NYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVRREL 314
+Y D N + S LS L G+IS +C R+A + + + +++EL V R+
Sbjct: 223 DY-RDGRNMVATDGCSMLSENLSLGEISPAQCWHAGRRAMQAGKDGAEPWVKEL-VWRDF 280
Query: 315 ADNFCFYQPNYD--SLKGAWE 333
A + ++ P+ S + W+
Sbjct: 281 AWHLLWHTPHIADRSWRAGWQ 301
>gi|167628126|ref|YP_001678626.1| deoxyribodipyrimidine photo-lyase [Francisella philomiragia subsp.
philomiragia ATCC 25017]
gi|167598127|gb|ABZ88125.1| Deoxyribodipyrimidine photo-lyase [Francisella philomiragia subsp.
philomiragia ATCC 25017]
Length = 464
Score = 43.5 bits (101), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 54/107 (50%), Gaps = 17/107 (15%)
Query: 225 PEIGW------CESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHF 278
P++ W + GEDA+ ++L + FL ++K Y R+ + + S LSPYLHF
Sbjct: 184 PKLSWQNIIDQWQIGEDASHQIL----EEFLDGKVKEYKIARD-FMSTDSTSKLSPYLHF 238
Query: 279 GQISAQRCALEARKARKLCPEAIDTFLEELIVRRELADNFCFYQPNY 325
G+IS + A ++ + F++EL+ R +F +YQ Y
Sbjct: 239 GEISPNQI-FNAVQSLDYIGNNEEHFIKELVWR-----DFSYYQIYY 279
>gi|134302129|ref|YP_001122098.1| deoxyribodipyrimidine photolyase [Francisella tularensis subsp.
tularensis WY96-3418]
gi|421751949|ref|ZP_16188985.1| deoxyribodipyrimidine photolyase [Francisella tularensis subsp.
tularensis AS_713]
gi|421753807|ref|ZP_16190796.1| deoxyribodipyrimidine photolyase [Francisella tularensis subsp.
tularensis 831]
gi|421757530|ref|ZP_16194409.1| deoxyribodipyrimidine photolyase [Francisella tularensis subsp.
tularensis 80700103]
gi|421759384|ref|ZP_16196217.1| deoxyribodipyrimidine photolyase [Francisella tularensis subsp.
tularensis 70102010]
gi|424674702|ref|ZP_18111618.1| deoxyribodipyrimidine photolyase [Francisella tularensis subsp.
tularensis 70001275]
gi|134049906|gb|ABO46977.1| deoxyribodipyrimidine photolyase [Francisella tularensis subsp.
tularensis WY96-3418]
gi|409086284|gb|EKM86404.1| deoxyribodipyrimidine photolyase [Francisella tularensis subsp.
tularensis AS_713]
gi|409086489|gb|EKM86608.1| deoxyribodipyrimidine photolyase [Francisella tularensis subsp.
tularensis 831]
gi|409091110|gb|EKM91115.1| deoxyribodipyrimidine photolyase [Francisella tularensis subsp.
tularensis 70102010]
gi|409092478|gb|EKM92451.1| deoxyribodipyrimidine photolyase [Francisella tularensis subsp.
tularensis 80700103]
gi|417434746|gb|EKT89688.1| deoxyribodipyrimidine photolyase [Francisella tularensis subsp.
tularensis 70001275]
Length = 464
Score = 43.5 bits (101), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 49/93 (52%), Gaps = 11/93 (11%)
Query: 233 GEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARK 292
GE A+ ++L + FL ++K Y T R+ + + S LSPYLHFG+IS + A +
Sbjct: 198 GESASHQIL----EEFLDNKVKEYKTARD-FMSTDSTSKLSPYLHFGEISPNQI-FNAVQ 251
Query: 293 ARKLCPEAIDTFLEELIVRRELADNFCFYQPNY 325
+ + F++EL+ R +F +YQ Y
Sbjct: 252 SLDYIGNNEEHFIKELVWR-----DFSYYQIYY 279
>gi|389783153|ref|ZP_10194647.1| deoxyribodipyrimidine photo lyase [Rhodanobacter spathiphylli B39]
gi|388435091|gb|EIL92009.1| deoxyribodipyrimidine photo lyase [Rhodanobacter spathiphylli B39]
Length = 469
Score = 43.5 bits (101), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 75/309 (24%), Positives = 119/309 (38%), Gaps = 50/309 (16%)
Query: 37 RDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQRNIEET 96
RD R+ DN A A + + + +PV + + D+ A + ++ LR L R++ +
Sbjct: 10 RDLRLADNPAWSAACAE-HAHVLPVFIHAD--DEACPAGSASRWWLHHALRALDRDLRDA 66
Query: 97 FQILFFLFQGEAEDNIPNFVRECGASLLVTD--FSPLREIRRCKDKICNRVSDSVTIHEV 154
L L +GE D + +R GA + + + P R + K R D + +H
Sbjct: 67 GAALH-LRRGELLDVLRELIRRSGAVAVYWNRLYEPAAISRDTQLKSALR-QDGIAVHSH 124
Query: 155 DAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQPIEKW-----------TG 203
+A W + K KL PE P+ + W
Sbjct: 125 NAALWCEPWRIATGQGQPYKVFTPYWRKLRPELQAVAPLPAPRVPGWRELPDGLPLEALE 184
Query: 204 TRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNP 263
IDW + A + G ++G +E+ F + +Y R+ P
Sbjct: 185 LLPRIDWAGGLRAHWQPG---------QAGARELLEI-------FADDAINDYARARDLP 228
Query: 264 LKPRALSGLSPYLHFGQISAQRCALEA-RKARKLCPEAIDT--------FLEELIVRREL 314
+ S LSP+LHFG+IS ++ E R+A AIDT FL EL RE
Sbjct: 229 AR-HGTSRLSPHLHFGEISPRQIHFELDRRA-----GAIDTRRRPDLEPFLRELGW-REF 281
Query: 315 ADNFCFYQP 323
A + F+ P
Sbjct: 282 AHHLLFHFP 290
>gi|329894045|ref|ZP_08270030.1| Deoxyribodipyrimidine photolyase [gamma proteobacterium IMCC3088]
gi|328923217|gb|EGG30537.1| Deoxyribodipyrimidine photolyase [gamma proteobacterium IMCC3088]
Length = 467
Score = 43.5 bits (101), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 78/301 (25%), Positives = 117/301 (38%), Gaps = 47/301 (15%)
Query: 32 VYWMFRDQRVRDNWALIHAVDQANKNNVPVAVA----FNLFDQFLGAKARQLGFMLRGLR 87
+ W +D RV DN AL HA + + + A + L D A R+ F+ R L
Sbjct: 5 LVWFRQDLRVYDNTALWHACLDPEADVIALFCATPQQWRLHDM---APVRE-RFLWRNLT 60
Query: 88 LLQRNIEETFQILFFLFQGEAED---NIPNFVRECGASLLVTDFS-PLREIRRCKDKICN 143
L+ + E L ED ++P G + L + P+ E +R + I
Sbjct: 61 ALKERLGELNIPLVVKHCQTFEDCVQDVPTLCEALGVTNLYANCEYPVNEQKRDR-AIRE 119
Query: 144 RVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQPIEKWTG 203
++D V+ H + P+ G + K Y + P IE+W
Sbjct: 120 ALADKVSCHWHHDFGIKPL---------------GLLTKTGNPYTVFSPFKRAWIERWRA 164
Query: 204 TRQSI----DWDSIIAAV-----LRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLK 254
I + AAV L + + W +GEDAAM L F R+
Sbjct: 165 DPAPIYPAPEPRRCSAAVPGSELLASDKQAMDQFW-PAGEDAAMNRLA----HFCEDRID 219
Query: 255 NYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARK----LCPEAIDTFLEELIV 310
+Y R+ P +P S LSPYL G IS + C A +A + + DT++ ELI
Sbjct: 220 HYKAKRDLPAEP-GTSELSPYLAAGVISPRVCLDAAIRANRGDIHEGRQGPDTWISELIW 278
Query: 311 R 311
R
Sbjct: 279 R 279
>gi|365880713|ref|ZP_09420069.1| Deoxyribodipyrimidine photo-lyase (DNA photolyase)
(Photoreactivating enzyme) [Bradyrhizobium sp. ORS 375]
gi|365291224|emb|CCD92600.1| Deoxyribodipyrimidine photo-lyase (DNA photolyase)
(Photoreactivating enzyme) [Bradyrhizobium sp. ORS 375]
Length = 422
Score = 43.5 bits (101), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 49/97 (50%), Gaps = 9/97 (9%)
Query: 231 ESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEA 290
+ GE A + L+G FL + +Y DR+ P A S LSP+L FG+IS ++ A
Sbjct: 146 QPGERTAQQRLRG----FLESAVSSYAADRDRP-DIDATSRLSPHLRFGEISPRQIWHAA 200
Query: 291 RKA---RKLCPEAIDTFLEELIVRRELADNFCFYQPN 324
R A R + ID FL E + RE + + + P+
Sbjct: 201 RFAAEERPALAKGIDKFLSE-VGWREFSRHLLYNNPD 236
>gi|424914362|ref|ZP_18337726.1| deoxyribodipyrimidine photolyase [Rhizobium leguminosarum bv.
trifolii WSM597]
gi|392850538|gb|EJB03059.1| deoxyribodipyrimidine photolyase [Rhizobium leguminosarum bv.
trifolii WSM597]
Length = 507
Score = 43.5 bits (101), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 73/316 (23%), Positives = 111/316 (35%), Gaps = 41/316 (12%)
Query: 30 PVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLL 89
PV+ W RD R+ DN AL +A + + +P+ + A Q ++ L L
Sbjct: 32 PVILWFRRDLRLDDNQAL-NAAHLSGRPIIPLYINEPAAAGTGPLGAAQAWWLHHSLEAL 90
Query: 90 QRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTD--FSPLR--------------- 132
R++ E Q L G+A + + +++ GA + + + P
Sbjct: 91 DRSLHER-QGGLVLASGDALEVLRAVIKKSGAEAVFWNRRYDPSGISVDTHIKQELEKQA 149
Query: 133 -EIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDY 191
E R ++ + S +T P W A E + L L
Sbjct: 150 IEARSFGGQLLHEPSRLMTGSGTPYRVYTPFWRALEGAGEAEPPLEAPAKLRL---AAQR 206
Query: 192 PMLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTK 251
P E ++ W DW + W GE A E L F+
Sbjct: 207 PASET-LKSWKLLPTKPDWAKDFTDL-----------WT-PGEQGARERLSA----FVED 249
Query: 252 RLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVR 311
LK Y +R+ P KP A S LSP+L G+IS R R P A + I
Sbjct: 250 ELKGYKENRDYPAKP-ATSMLSPHLALGEISPARIWDATRGLSNRVPAADIVHFRKEIAW 308
Query: 312 RELADNFCFYQPNYDS 327
RE + + F+ P S
Sbjct: 309 REFSYHLLFHFPRLAS 324
>gi|254797170|ref|YP_003082010.1| deoxyribodipyrimidine photolyase [Neorickettsia risticii str.
Illinois]
gi|254590408|gb|ACT69770.1| deoxyribodipyrimidine photolyase [Neorickettsia risticii str.
Illinois]
Length = 469
Score = 43.5 bits (101), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 41/80 (51%), Gaps = 6/80 (7%)
Query: 248 FLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEE 307
F+ K+L NY DR+ P K S LSPY++FGQIS R + P++I FL E
Sbjct: 222 FVDKKLDNYHIDRDYPGK-NGTSTLSPYINFGQISPNRIWF---ALVRFLPQSIQ-FLTE 276
Query: 308 LIVRRELADNFCFYQPNYDS 327
L+ RE A N P S
Sbjct: 277 LLW-REFAYNILNTNPELGS 295
>gi|228908916|ref|ZP_04072746.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis IBL 200]
gi|228850638|gb|EEM95462.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis IBL 200]
Length = 476
Score = 43.5 bits (101), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 66/302 (21%), Positives = 125/302 (41%), Gaps = 38/302 (12%)
Query: 37 RDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQRNIEET 96
+D R+ DN AL AV +PV V F +G ++ ++ + +++ +E
Sbjct: 11 KDFRLYDNPALFEAVQSGEV--LPVYVQDEAFS--MGEASK--WWLHHAVIDVKKQLEAL 64
Query: 97 FQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICNRVSD-SVTIHEVD 155
L + +G E+ I + + + + + + + + K+ + D + E +
Sbjct: 65 GSTLI-IRKGRTEEAILSLIEKLDITAVYWNICYDPDRLKSNQKMKMMLEDKGIICKEFN 123
Query: 156 AHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQPIEKWTGTRQSIDWDSIIA 215
+H ++ W+ +K K N + ++ +P+ K QSI W S +
Sbjct: 124 SHLLLESWIIKKKDNTEYKVFTPFYNAFQKQ------VIPKPVSK----VQSIKWGSSLP 173
Query: 216 AVLRKGAE--VPEIGWC-------ESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKP 266
A L +P I W E E+ A + K F + +L +Y R+ P
Sbjct: 174 ASLSVSELHLLPTIPWTSHIESMWEPTEEGAYKTFKK----FFSSKLASYSEGRDFP-NQ 228
Query: 267 RALSGLSPYLHFGQISAQRC--ALEARKARKLCP---EAIDTFLEELIVRRELADNFCFY 321
A S L+PYL FGQIS + L + + C + +++F+ +LI RE + ++
Sbjct: 229 NAHSMLAPYLSFGQISVKLMYHYLINKSTERQCSLFEKQVNSFIRQLI-WREFSYYLLYH 287
Query: 322 QP 323
P
Sbjct: 288 YP 289
>gi|254373077|ref|ZP_04988566.1| hypothetical protein FTCG_00652 [Francisella tularensis subsp.
novicida GA99-3549]
gi|151570804|gb|EDN36458.1| hypothetical protein FTCG_00652 [Francisella novicida GA99-3549]
Length = 464
Score = 43.5 bits (101), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 49/93 (52%), Gaps = 11/93 (11%)
Query: 233 GEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARK 292
GE A+ ++L + FL ++K Y T R+ + + S LSPYLHFG+IS + A +
Sbjct: 198 GESASHQIL----EEFLDNKVKEYKTARD-FMSTDSTSKLSPYLHFGEISPNQI-FNAVQ 251
Query: 293 ARKLCPEAIDTFLEELIVRRELADNFCFYQPNY 325
+ + F++EL+ R +F +YQ Y
Sbjct: 252 SLDYIGNNEEHFIKELVWR-----DFSYYQIYY 279
>gi|332185330|ref|ZP_08387079.1| DNA photolyase family protein [Sphingomonas sp. S17]
gi|332015054|gb|EGI57110.1| DNA photolyase family protein [Sphingomonas sp. S17]
Length = 455
Score = 43.5 bits (101), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 70/308 (22%), Positives = 123/308 (39%), Gaps = 34/308 (11%)
Query: 30 PVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLG---AKARQLGFMLRGL 86
P + W +D R+ D AL+ A + PV + L D+ G Q ++ L
Sbjct: 4 PHIVWFRQDLRLHDQPALLAAAEAG-----PVLPVYILDDETPGDWKMGGAQRWWLHHSL 58
Query: 87 RLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLL--VTDFSPLREIRRCKDKICNR 144
L ++++ L L +G A + + +E GA + + + P R+ +D++ +R
Sbjct: 59 EALAKDLKALGSRLI-LRRGRAVEVLQALSKEAGAEAIHAIRHYEPW--WRKAEDELGDR 115
Query: 145 VSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQPIEKWTGT 204
+ H V + + + +G + PE+ ++ P ++W +
Sbjct: 116 LCLYDGNHLARPELVTTG--SGKPFRIYSAFWKGLQGHMPPEHPLEAPDALTAPDRWPAS 173
Query: 205 RQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPL 264
+ DWD + + + W GE A E + + Y T RN P
Sbjct: 174 DKLADWD--LLPTKPDWSTGFDADWT-PGEATARERMAD-----FVAKAAAYDTARNMPS 225
Query: 265 KPRALSGLSPYLHFGQISAQRC--ALEARKARKLCPEAIDTFLEELIVRRELADNFCFYQ 322
+ S LSP+LHFG++S + AL+ RKA +TF +EL R+ D
Sbjct: 226 E-EGSSRLSPHLHFGEVSPRAVWHALD-RKAE------TETFRKEL-AWRDFTDGVVMAI 276
Query: 323 PNYDSLKG 330
P+Y G
Sbjct: 277 PDYADRNG 284
>gi|423398956|ref|ZP_17376156.1| hypothetical protein ICU_04649 [Bacillus cereus BAG2X1-1]
gi|423410080|ref|ZP_17387228.1| hypothetical protein ICY_04764 [Bacillus cereus BAG2X1-3]
gi|401645588|gb|EJS63241.1| hypothetical protein ICU_04649 [Bacillus cereus BAG2X1-1]
gi|401650994|gb|EJS68562.1| hypothetical protein ICY_04764 [Bacillus cereus BAG2X1-3]
Length = 476
Score = 43.5 bits (101), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 66/299 (22%), Positives = 125/299 (41%), Gaps = 32/299 (10%)
Query: 37 RDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQRNIEET 96
+D R+ DN AL AV +PV + F +G+ A+ ++ + +++ +E
Sbjct: 11 KDFRLYDNPALFEAVQSGEV--LPVYIQDATFS--IGSAAK--WWLHHAVIDVKKQLEAL 64
Query: 97 FQILFFLFQGEAEDNIPNFVRECGASLLVTD--FSPLREIRRCKDKICNRVSDSVTIHEV 154
L + +G E+ I + + + + + + + P R K K+ +T E
Sbjct: 65 GSTLI-IRKGRTEEEILSLIEQLDITAVYWNICYDPDRLQSNQKMKMMLE-GKGITCKEF 122
Query: 155 DAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQPIEKWTGTRQSIDWDSII 214
++H ++ W+ +K K N + ++ +PI + QSI W + +
Sbjct: 123 NSHLLLEPWIIKKKNNTEYKVFTPFYNAFQKQ------VIPKPISR----VQSIKWGNSL 172
Query: 215 AAVLRKGAE--VPEIGWCESGE---DAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRAL 269
A L +P I W E D+ E + F + +L +Y R+ P
Sbjct: 173 PASLSVSELHLLPTIPWTSHMEAIWDSTEEGAYKAFKKFFSSKLVSYSEGRDFP-DQNVH 231
Query: 270 SGLSPYLHFGQISAQRC--ALEARKARKLCP---EAIDTFLEELIVRRELADNFCFYQP 323
S L+PYL FGQIS + L + + C + +++F+ +LI RE + ++ P
Sbjct: 232 SMLAPYLSFGQISVKLMFHYLINKSTERQCSLFEKQVNSFIRQLI-WREFSYYLLYHYP 289
>gi|229179435|ref|ZP_04306788.1| Deoxyribodipyrimidine photolyase [Bacillus cereus 172560W]
gi|228603936|gb|EEK61404.1| Deoxyribodipyrimidine photolyase [Bacillus cereus 172560W]
Length = 476
Score = 43.5 bits (101), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 68/303 (22%), Positives = 126/303 (41%), Gaps = 40/303 (13%)
Query: 37 RDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQRNIEET 96
+D R+ DN AL AV +PV V F +G+ A+ ++ + +Q+ ++
Sbjct: 11 KDFRLYDNPALFEAVQSGEV--LPVYVQDETFS--IGSAAK--WWLHHAIIDVQKQLKAL 64
Query: 97 FQILFFLFQGEAEDNIPNFVRECGASLLVTD--FSPLREIRRCKDKICNRVSDSVTIHEV 154
L + +G ++ I + +++ + + + + P R K K+ + E
Sbjct: 65 GSTLI-IRKGNTQEEILSLIKQLDITAVYWNSCYDPDRLKSNQKMKMILE-DKGIICKEF 122
Query: 155 DAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQPIEKWTGTRQSIDWDSII 214
++H ++ W+ +K K N + ++ +PI + QSI W S +
Sbjct: 123 NSHLLLEPWIIKKKDNTEYKVFTPFYNAFQKQ------VIPKPISR----VQSIKWGSSL 172
Query: 215 AAVLRKGAE--VPEIGWC-------ESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLK 265
A L +P I W E E+ A + K F + +L +Y R+ P
Sbjct: 173 PASLSVSELHLLPTIPWTSHMEAIWEPTEEGAYKTFKK----FFSSKLASYSEGRDFP-N 227
Query: 266 PRALSGLSPYLHFGQISAQRC--ALEARKARKLCP---EAIDTFLEELIVRRELADNFCF 320
A S L+PYL FGQIS + L + + C + + +F+ +LI RE + +
Sbjct: 228 QNAHSMLAPYLSFGQISVKLMYHYLINKSTERQCSFFEKQVISFIRQLI-WREFSYYLLY 286
Query: 321 YQP 323
+ P
Sbjct: 287 HYP 289
>gi|289662993|ref|ZP_06484574.1| photolyase [Xanthomonas campestris pv. vasculorum NCPPB 702]
Length = 484
Score = 43.5 bits (101), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 50/93 (53%), Gaps = 13/93 (13%)
Query: 231 ESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCA--L 288
+ GE A E+L+ DG L+ Y +R+ P + S LSP+LHFG+I+ R A L
Sbjct: 215 QPGEAGAHEMLEIFIDGALS----GYRENRDRPDR-VGTSQLSPHLHFGEIAPWRIASTL 269
Query: 289 EARKARKLCPEAIDTFLEELIVRRELADNFCFY 321
EA + + C E ID ++ +L R +F +Y
Sbjct: 270 EAHRTARNCAE-IDGYIRQLGWR-----DFAYY 296
>gi|83858274|ref|ZP_00951796.1| Deoxyribodipyrimidine photolyase [Oceanicaulis sp. HTCC2633]
gi|83853097|gb|EAP90949.1| Deoxyribodipyrimidine photolyase [Oceanicaulis sp. HTCC2633]
Length = 480
Score = 43.1 bits (100), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 57/123 (46%), Gaps = 19/123 (15%)
Query: 248 FLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEE 307
FL + +Y R+ P + S LSP+LHFG+IS ++ +++ DT+L E
Sbjct: 220 FLKAAVSDYSDRRDLPGQ-SGTSRLSPHLHFGEISPRQVWHAVKQSDHARTGGADTYLSE 278
Query: 308 LIVRRELADNFCFYQP-----NYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTA 362
I RE + N ++ P N+ S A+EW D DK + ++K QT
Sbjct: 279 -IAWREFSYNLLYHFPDLPEANFQSKFDAFEW------DECEDKL------KAWQKGQTG 325
Query: 363 DPV 365
P+
Sbjct: 326 YPI 328
>gi|218231250|ref|YP_002367872.1| deoxyribodipyrimidine photolyase [Bacillus cereus B4264]
gi|218159207|gb|ACK59199.1| deoxyribodipyrimidine photo-lyase [Bacillus cereus B4264]
Length = 476
Score = 43.1 bits (100), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 68/303 (22%), Positives = 126/303 (41%), Gaps = 40/303 (13%)
Query: 37 RDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQRNIEET 96
+D R+ DN AL AV +PV V F +G+ A+ ++ + +Q+ ++
Sbjct: 11 KDFRLYDNPALFEAVQSGEV--LPVYVQDETFS--IGSAAK--WWLHHAIIDVQKQLKAL 64
Query: 97 FQILFFLFQGEAEDNIPNFVRECGASLLVTD--FSPLREIRRCKDKICNRVSDSVTIHEV 154
L + +G ++ I + +++ + + + + P R K K+ + E
Sbjct: 65 GSTLI-IRKGNTQEEILSLIKQLDITAVYWNSCYDPDRLKSNQKMKMILE-DKGIICKEF 122
Query: 155 DAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQPIEKWTGTRQSIDWDSII 214
++H ++ W+ +K K N + ++ +PI + QSI W S +
Sbjct: 123 NSHLLLEPWIIKKKDNTEYKVFTPFYNAFQKQ------VIPKPISR----VQSIKWGSSL 172
Query: 215 AAVLRKGAE--VPEIGWC-------ESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLK 265
A L +P I W E E+ A + K F + +L +Y R+ P
Sbjct: 173 PASLSVSELHLLPTIPWTSHMEAIWEPTEEGAYKTFKK----FFSSKLASYSEGRDFP-N 227
Query: 266 PRALSGLSPYLHFGQISAQRC--ALEARKARKLCP---EAIDTFLEELIVRRELADNFCF 320
A S L+PYL FGQIS + L + + C + + +F+ +LI RE + +
Sbjct: 228 QNAHSMLAPYLSFGQISVKLMYHYLINKSTERQCSFFEKQVISFIRQLI-WREFSYYLLY 286
Query: 321 YQP 323
+ P
Sbjct: 287 HYP 289
>gi|119944756|ref|YP_942436.1| deoxyribodipyrimidine photo-lyase [Psychromonas ingrahamii 37]
gi|119863360|gb|ABM02837.1| deoxyribodipyrimidine photo-lyase type I [Psychromonas ingrahamii
37]
Length = 453
Score = 43.1 bits (100), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 51/99 (51%), Gaps = 16/99 (16%)
Query: 232 SGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEAR 291
+GE AA+ L+ FL + +++Y +R+ P SGLS YL FG ISA+RC E
Sbjct: 196 AGETAALRRLRH----FLLQDIEDYHHNRDIP-SLDGTSGLSAYLKFGVISAKRCVYEVL 250
Query: 292 KARKLCPEAID-------TFLEELIVRRELADNFCFYQP 323
A P+A+D +++ E IV RE + + P
Sbjct: 251 AA---FPDALDAQDSSVFSWINE-IVWREFYRHLMIFNP 285
>gi|219127169|ref|XP_002183813.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217404536|gb|EEC44482.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 495
Score = 43.1 bits (100), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 49/182 (26%), Positives = 78/182 (42%), Gaps = 32/182 (17%)
Query: 172 SAKTLRGKINKLLPEYLIDYPMLEQPIEKWTGTRQSI---------DW-DSIIAAVLRKG 221
+A RG++ ++ E D P L P + S +W DS I A R+
Sbjct: 225 TAPKRRGEVMGVVEEGHFDAPTLSMPSPADFLSNPSFASLYSVLPAEWKDSKIPAPGRRP 284
Query: 222 ---AEVPEIGWCE------SGEDAAM----EVLKGSKDG------FLTKRLKNYPTDRNN 262
A++ I C+ SG D+++ + G++ G FL L Y RNN
Sbjct: 285 WSVADLTSIADCKAWALQWSGADSSVAPCVQTHGGARAGMKRWTVFLNHHLVKYARTRNN 344
Query: 263 PLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVRRELADNFCFYQ 322
+P A+S LS YL+ G IS + + + A + FL+E++ RE+ CF
Sbjct: 345 ITQPHAVSRLSCYLNLGVISIFQVLFDLYNRDR---NATEKFLDEIVKWREIGYVHCFAF 401
Query: 323 PN 324
P+
Sbjct: 402 PH 403
>gi|424894750|ref|ZP_18318324.1| deoxyribodipyrimidine photolyase [Rhizobium leguminosarum bv.
trifolii WSM2297]
gi|393178977|gb|EJC79016.1| deoxyribodipyrimidine photolyase [Rhizobium leguminosarum bv.
trifolii WSM2297]
Length = 482
Score = 43.1 bits (100), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 75/316 (23%), Positives = 118/316 (37%), Gaps = 42/316 (13%)
Query: 30 PVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLL 89
PV+ W +D R+ DN AL +A + + +P+ ++ A Q ++ L L
Sbjct: 8 PVILWFRKDLRLDDNQAL-NAAHLSGRPVIPLYIS-EPAAGAGPLGAAQAWWLHHSLEAL 65
Query: 90 QRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTD--FSP------LR--------- 132
R + + Q L GEA + + F+ E GA+ + + + P +R
Sbjct: 66 DRALRKR-QGQLVLASGEALEVLRAFISESGAAAVFWNRRYDPSCTTIDIRIKHELKKQA 124
Query: 133 -EIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDY 191
E+R ++ + S +T P W A E A L + L L
Sbjct: 125 IEVRSFGGQLLHEPSRLMTGSGTPYRVYTPFWRALEGAGELALPLEAPVKLQLAAQL--- 181
Query: 192 PMLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTK 251
P E+ +E W DW + W GE + L+ F+
Sbjct: 182 PKSER-LESWKLLPTKPDWARDFGDL-----------WT-PGEQGGRDKLR----AFVED 224
Query: 252 RLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVR 311
L Y +R+ P K +A S LSP+L G+IS R R K P A + I
Sbjct: 225 TLDGYRENRDYPAK-QATSMLSPHLALGEISPARIWDATRGLSKRVPAADIVHFRKEIAW 283
Query: 312 RELADNFCFYQPNYDS 327
RE + + F+ P S
Sbjct: 284 REFSYHLLFHFPRLAS 299
>gi|254875029|ref|ZP_05247739.1| phrB, deoxyribodipyrimidine photolyase [Francisella tularensis
subsp. tularensis MA00-2987]
gi|254841028|gb|EET19464.1| phrB, deoxyribodipyrimidine photolyase [Francisella tularensis
subsp. tularensis MA00-2987]
Length = 355
Score = 43.1 bits (100), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 49/93 (52%), Gaps = 11/93 (11%)
Query: 233 GEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARK 292
GE A+ ++L + FL ++K Y T R+ + + S LSPYLHFG+IS + A +
Sbjct: 89 GESASHQIL----EEFLDNKVKEYKTARDF-MSTDSTSKLSPYLHFGEISPNQI-FNAVQ 142
Query: 293 ARKLCPEAIDTFLEELIVRRELADNFCFYQPNY 325
+ + F++EL+ R +F +YQ Y
Sbjct: 143 SLDYIGNNEEHFIKELVWR-----DFSYYQIYY 170
>gi|290975950|ref|XP_002670704.1| predicted protein [Naegleria gruberi]
gi|284084266|gb|EFC37960.1| predicted protein [Naegleria gruberi]
Length = 553
Score = 43.1 bits (100), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 80/365 (21%), Positives = 142/365 (38%), Gaps = 47/365 (12%)
Query: 34 WMFRDQRVRDNWALIHAVDQANKNNV--------------PVAVAFNLFDQFLGAKARQL 79
W D R+ DN +LI + AN +N P F+ +F A A +
Sbjct: 14 WFRNDLRLHDNESLIKTLRLANSSNNNTSKVGVLPLYCFDPRHFGFSRIGKFRKANANRT 73
Query: 80 GFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKD 139
F+ + L++N+ + + + G E+ IP+ + + D +E+ +
Sbjct: 74 RFLTESVDNLRKNLMNEWGLKLMIQIGHPEEIIPHLCSQYEIEQVFAD----KEVTSEET 129
Query: 140 KICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLE-QPI 198
I + + ++ ++V V K+E K+ LI P+L+ P
Sbjct: 130 SIEQVLEKQINVNYSYGFSMVHVEDLPFKIENLPHVFTDFRRKVENPKLIVRPLLQLSPN 189
Query: 199 EKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLK---------GSKDGFL 249
EK + + ++ A L K ++ +G+ + ME LK G +D L
Sbjct: 190 EKKLISSRVVNLIQDENA-LGKTPDLKVLGYTDEEISEMMENLKDPRSVLHFKGGEDEAL 248
Query: 250 TK---------RLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEA 300
+ RLK Y RN + S LSP+L G IS ++ E ++ K E
Sbjct: 249 ARLNDYLWTQDRLKTYKETRNGLVGEAYSSKLSPWLSLGCISPRKIYHEVKRYEKERVEN 308
Query: 301 IDTFLEELIVRRELADNFCFYQPNYDS----LKGAWEWARKS---LKDHASDKREHIYTK 353
T+ LI D F F+ + + LKG + K + D +S+K E Y +
Sbjct: 309 DSTYW--LIFELLWRDYFRFFAEKFGNHIFMLKGVTRASSKRKGLIGDSSSNKVESKYDE 366
Query: 354 EQFEK 358
++++
Sbjct: 367 TRWKQ 371
>gi|427429184|ref|ZP_18919220.1| Deoxyribodipyrimidine photolyase [Caenispirillum salinarum AK4]
gi|425880864|gb|EKV29558.1| Deoxyribodipyrimidine photolyase [Caenispirillum salinarum AK4]
Length = 481
Score = 43.1 bits (100), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 84/318 (26%), Positives = 122/318 (38%), Gaps = 48/318 (15%)
Query: 30 PVVYWMFRDQ-RVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRG-LR 87
PV+ +FRD R+ D+ AL AV +P+ V G AR LG +R L
Sbjct: 9 PVIV-LFRDDLRLADHRALSAAVGT-GAPVIPLYVVDTAHGLGAGETARPLGGAVRWWLH 66
Query: 88 LLQRNIEETFQIL---FFLFQGEAEDNIPNFVRECGAS--LLVTDFSPLR--EIRRCKDK 140
++ E + L L G + +P E GA+ LL P RR
Sbjct: 67 YSLESLSEGLRALGSRLILRAGRPHEVVPQVAAETGAARVLLNETVVPTHRESARRMAAA 126
Query: 141 ICNRVSDSVTIHE------------VDAHNVV--PVWVASEKLEYSAKTLRGKINKLLPE 186
+ ++ ++VT+ H V P W A ++ +TL P+
Sbjct: 127 LEDQGVEAVTLRPDALVWPSELKTGTGGHYKVYTPFWKALKQAVGDPETLPPPERLPAPD 186
Query: 187 YLIDYPMLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKD 246
+ D P+ ++ T DW A LR+ GED A L D
Sbjct: 187 HWPD----STPLAEFRLTPAMPDW----AGGLRES--------WTPGEDGAWACLHTFID 230
Query: 247 GFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLE 306
G L + Y T RN P + S LSP+L FG+ISA R A ++ + D +L
Sbjct: 231 GALAR----YRTGRNLPAE-VGTSRLSPHLRFGEISA-RQVWNAVRSMAEPNASTDAYLS 284
Query: 307 ELIVRRELADNFCFYQPN 324
E I RE F+ P+
Sbjct: 285 E-IGWREFNRYQLFHNPD 301
>gi|357384343|ref|YP_004899067.1| deoxyribodipyrimidine photolyase [Pelagibacterium halotolerans B2]
gi|351592980|gb|AEQ51317.1| deoxyribodipyrimidine photolyase [Pelagibacterium halotolerans B2]
Length = 466
Score = 43.1 bits (100), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 84/354 (23%), Positives = 138/354 (38%), Gaps = 58/354 (16%)
Query: 31 VVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNL-----FDQFLGAKARQLGFMLRG 85
+ W+ D R+ DN AL A+ ++ PV + L GA L L
Sbjct: 5 TLVWLRNDLRIADNPALAAAL----RHEGPVHAVYVLETDRELRGLGGAAKVWLHESLAA 60
Query: 86 LR--LLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTD--FSPLREIRRCKDKI 141
L L +R + +F+ +GE+ IP VRE A + + + P K
Sbjct: 61 LSGALAERGVRLSFR------EGESGKIIPEMVRETKAERVYWNRRYDPAGRTHDAAIKT 114
Query: 142 CNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQPIEKW 201
R +D + +A +V W + K +G + + + E+PI
Sbjct: 115 ALR-ADGAEVASFNASLLVEPWDIATK--------QGTPYGVFTPFWT--ALREKPIPDP 163
Query: 202 TGTRQSIDWDSIIAAVLRKGAEVPEIG-----WCESGEDAAMEVLKGSKDGFLTKRLKNY 256
G + + +I A L G G W GEDAA VL FL L +Y
Sbjct: 164 IGRIEKHE--AISAPALDFGKRPAWAGGILERWA-IGEDAAKRVLSD----FLDDLLADY 216
Query: 257 PTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARK---ARKLCPEAIDTFLEELIVRRE 313
P DR+ P K S +SP+L FG+I ++ R ++ A + FL E + RE
Sbjct: 217 PNDRDLPRK-DGTSRMSPHLRFGEIGPRQIWFAVRHLIDSKPSMASAGEKFLSE-VAWRE 274
Query: 314 LADNFCFYQPNYDSLKGAWEWARKSLKDHAS--DKREHIYTKEQFEKAQTADPV 365
+ + +++ + AR S+++ + R + ++K QT P+
Sbjct: 275 FSYHLLYHRDDI---------ARHSMQERFDEIEWRSDSKALKAWQKGQTGIPI 319
>gi|423581405|ref|ZP_17557516.1| hypothetical protein IIA_02920 [Bacillus cereus VD014]
gi|401216170|gb|EJR22885.1| hypothetical protein IIA_02920 [Bacillus cereus VD014]
Length = 476
Score = 43.1 bits (100), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 68/303 (22%), Positives = 124/303 (40%), Gaps = 40/303 (13%)
Query: 37 RDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQRNIEET 96
+D R+ DN AL AV +P+ + F +G+ A+ ++ + +++ +E
Sbjct: 11 KDFRLYDNPALFEAVQSGEV--LPIYIQDETFS--IGSAAK--WWLHHAIIDIKKQLEAL 64
Query: 97 FQILFFLFQGEAEDNIPNFVRECGASLLVTD--FSPLREIRRCKDKICNRVSDSVTIHEV 154
L + +G ++ I + +++ + + + + P R K K+ + E
Sbjct: 65 GSTLI-IRKGNIQEEILSLIKQLDITAVYWNSCYDPDRLKSNQKMKMILE-DKGIICKEF 122
Query: 155 DAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQPIEKWTGTRQSIDWDSII 214
++H ++ W+ +K K N +Q I K T QSI W S +
Sbjct: 123 NSHLLLEPWIIKKKDNTEYKVFTPFYNAFQ----------KQVIPKPTSKVQSIKWGSSL 172
Query: 215 AAVLRKGAE--VPEIGWC-------ESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLK 265
A L +P I W + E+ A +V K F + +L Y R+ P
Sbjct: 173 PASLSVSELHLLPTIPWTSHMEAIWDPTEEGAYKVFKK----FFSSKLAFYSEGRDFP-N 227
Query: 266 PRALSGLSPYLHFGQISAQRC--ALEARKARKLCP---EAIDTFLEELIVRRELADNFCF 320
A S L+PYL FGQIS + L + + C + + +F+ +LI RE + +
Sbjct: 228 QNAHSMLAPYLSFGQISVKLMYHYLINKSTERQCSLFEKQVISFIRQLI-WREFSYYLLY 286
Query: 321 YQP 323
+ P
Sbjct: 287 HYP 289
>gi|254504495|ref|ZP_05116646.1| deoxyribodipyrimidine photolyase family [Labrenzia alexandrii
DFL-11]
gi|222440566|gb|EEE47245.1| deoxyribodipyrimidine photolyase family [Labrenzia alexandrii
DFL-11]
Length = 478
Score = 43.1 bits (100), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 36/102 (35%), Positives = 47/102 (46%), Gaps = 8/102 (7%)
Query: 229 WCESGEDAAMEVLKGSKD---GFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQR 285
W E ED G+KD FL L Y RN P P +S LSP+LHFG IS ++
Sbjct: 189 WAEGWEDIWQPGAAGAKDRLIEFLDHGLSGYGDKRNRPDLPN-VSRLSPHLHFGDISPKQ 247
Query: 286 --CALEARKARKLCPEA-IDTFLEELIVRRELADNFCFYQPN 324
A + ARK + FL E I RE + + ++ P
Sbjct: 248 VWSATQHATARKSSLSSDGHKFLSE-IAWREFSYHLLYHYPQ 288
>gi|229075148|ref|ZP_04208142.1| Deoxyribodipyrimidine photolyase [Bacillus cereus Rock4-18]
gi|228707925|gb|EEL60104.1| Deoxyribodipyrimidine photolyase [Bacillus cereus Rock4-18]
Length = 476
Score = 43.1 bits (100), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 64/298 (21%), Positives = 121/298 (40%), Gaps = 30/298 (10%)
Query: 37 RDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQRNIEET 96
+D R+ DN AL A VPV V F +G+ ++ + L + + ET
Sbjct: 11 KDFRLYDNPALFEAAQSGEV--VPVYVHDETFP--MGSASK---WWLHHAIIDVKKQLET 63
Query: 97 FQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICNRVSD-SVTIHEVD 155
+ +G ++ I + + + G + + + + + K+ + D + E +
Sbjct: 64 LGSTLIIRKGNTQEEIFSLIEQLGITAVYWNICYDPDRLQSNQKMKMMLEDKGIVCKEFN 123
Query: 156 AHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQPIEKWTGTRQSIDWDSIIA 215
+H ++ W+ +K K N + ++ +PI + QSI W + +
Sbjct: 124 SHLLLEPWIIKKKDNTEYKVFTPFYNAFQKQ------VIPKPISR----VQSIKWGNSLP 173
Query: 216 AVL--RKGAEVPEIGWCESGE---DAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALS 270
A L + +P I W E D E + F + +L +Y R+ P S
Sbjct: 174 ASLFVSELHLLPTIPWTSHMEVIWDPTEEGAYKTFKKFFSSKLVSYSEGRDFP-NQNVHS 232
Query: 271 GLSPYLHFGQISAQRC--ALEARKARKLCP---EAIDTFLEELIVRRELADNFCFYQP 323
L+PYL FGQIS + L + + C + +++F+ +LI RE + ++ P
Sbjct: 233 MLAPYLSFGQISVKLMFHYLINKSTERQCSLFEKQVNSFIRQLI-WREFSYYLLYHYP 289
>gi|332141440|ref|YP_004427178.1| deoxyribodipyrimidine photo-lyase [Alteromonas macleodii str. 'Deep
ecotype']
gi|327551462|gb|AEA98180.1| deoxyribodipyrimidine photo-lyase [Alteromonas macleodii str. 'Deep
ecotype']
Length = 474
Score = 43.1 bits (100), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 81/314 (25%), Positives = 128/314 (40%), Gaps = 53/314 (16%)
Query: 32 VYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLG-----FMLRGL 86
+ W +D RV+DN AL A D VP+ + FD+ R G ++ L
Sbjct: 7 IMWFRQDLRVKDNPALNAACDMGKI--VPIYI----FDE-SAPDGRMPGGASKWWLHHSL 59
Query: 87 RLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTD--FSPLREIRRCKDKICNR 144
+ L + + QI F+G+ + IP + AS + + + P +I R K
Sbjct: 60 KSLNKRLNGHLQI----FKGDPQTLIPKLMESFNASSIFWNRCYEPW-QINRDK-----A 109
Query: 145 VSDSVTIHEVDAH--NVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQP----I 198
+ S+ + +AH N +W + L+ R P Y +E+P
Sbjct: 110 IKKSLLGSDYEAHSFNGSSLWEPMKVLKKDGTPYR----VFTPYYKNGCLQIEEPRYPKA 165
Query: 199 EKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCES-------GEDAAMEVLKGSKDGFLTK 251
T +D +S A L A +P I W ++ GED A + L F+
Sbjct: 166 PPARITYADVDDNSDGLAAL---ALLPTIKWDDTIAKEWTPGEDGAADNLSD----FIEN 218
Query: 252 RLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPE--AIDTFLEELI 309
+ Y R+ P + S LSP+LHFG++S + A K R E +I+T+L EL
Sbjct: 219 SARRYKDGRDIP-SAKGTSRLSPHLHFGEVSPNQVWY-AIKDRFGTSEDKSIETYLSEL- 275
Query: 310 VRRELADNFCFYQP 323
RE + F+ P
Sbjct: 276 GWREFSYYLLFHFP 289
>gi|206969086|ref|ZP_03230041.1| deoxyribodipyrimidine photolyase family protein [Bacillus cereus
AH1134]
gi|206736127|gb|EDZ53285.1| deoxyribodipyrimidine photolyase family protein [Bacillus cereus
AH1134]
Length = 476
Score = 43.1 bits (100), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 74/340 (21%), Positives = 141/340 (41%), Gaps = 39/340 (11%)
Query: 37 RDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQRNIEET 96
+D R+ DN AL AV +PV V F +G+ A+ ++ + +Q+ ++
Sbjct: 11 KDFRLYDNPALFEAVQSGEV--LPVYVQDETFS--IGSAAK--WWLRHAIMDVQKQLKAL 64
Query: 97 FQILFFLFQGEAEDNIPNFVRECGASLLVTD--FSPLREIRRCKDKICNRVSDSVTIHEV 154
L + +G ++ I + +++ + + + + P R K K+ + E
Sbjct: 65 GSTLI-IRKGNTQEEILSLIKQLDITAVYWNSCYDPDRLKSNQKMKMILE-DKGIICKEF 122
Query: 155 DAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQPIEKWTGTRQSIDWDSII 214
++H ++ W+ +K K N + ++ +PI + QSI W + +
Sbjct: 123 NSHLLLEPWIIKKKDNTEYKVFTPFYNAFQKQ------VIPKPISR----VQSIKWGNSL 172
Query: 215 AAVLRKGAE--VPEIGWCESGE---DAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRAL 269
A L +P I W E D E + F + +L +Y R+ P +
Sbjct: 173 PASLSVSELHLLPTIPWTSHMEAIWDPTEEGAYKTFKKFFSSKLASYSEGRDFPDQ-NVH 231
Query: 270 SGLSPYLHFGQISAQRC--ALEARKARKLCP---EAIDTFLEELIVRRELADNFCFYQPN 324
S L+PYL FGQIS + L + + C + +++F+ +LI RE + ++ P
Sbjct: 232 SMLAPYLSFGQISVKLMFHYLINKSTERQCSLFEKQVNSFIRQLI-WREFSYYLLYHYPF 290
Query: 325 YDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADP 364
S KS ++ DK E + + ++K +T P
Sbjct: 291 TVSKP-----LNKSFENFPWDKEEELLS--VWQKGETGYP 323
>gi|149914833|ref|ZP_01903363.1| deoxyribodipyrimidine photolyase, putative [Roseobacter sp.
AzwK-3b]
gi|149811626|gb|EDM71461.1| deoxyribodipyrimidine photolyase, putative [Roseobacter sp.
AzwK-3b]
Length = 473
Score = 43.1 bits (100), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 51/113 (45%), Gaps = 7/113 (6%)
Query: 211 DSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALS 270
D +AA + +GA + C + E +G F + Y T R+ P + S
Sbjct: 184 DWRLAAAMDRGAAI-----CRPYQRVGEEAAQGRLGWFTGHAIGAYDTARDLPAE-DGTS 237
Query: 271 GLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVRRELADNFCFYQP 323
GLS L G+IS +RC +A +T+L+EL V RE A + ++ P
Sbjct: 238 GLSENLALGEISPRRCWHAGMRAMHEGKPGAETWLKEL-VWREFAYHLAWHTP 289
>gi|421589294|ref|ZP_16034459.1| deoxyribodipyrimidine photo-lyase, partial [Rhizobium sp. Pop5]
gi|403705804|gb|EJZ21280.1| deoxyribodipyrimidine photo-lyase, partial [Rhizobium sp. Pop5]
Length = 316
Score = 43.1 bits (100), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 44/95 (46%), Gaps = 5/95 (5%)
Query: 233 GEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARK 292
GE A E L+ F+ L Y +R++P + A S LSP+L G+IS R E R
Sbjct: 211 GEQGAREKLRA----FVEHGLAGYKENRDHPAR-DATSMLSPHLALGEISPARIWDETRG 265
Query: 293 ARKLCPEAIDTFLEELIVRRELADNFCFYQPNYDS 327
K P A + I RE + + F+ P+ S
Sbjct: 266 LSKQVPAADIVHFRKEIAWREFSYHLLFHFPHLAS 300
>gi|296105770|ref|YP_003617470.1| deoxyribodipyrimidine photo-lyase [Legionella pneumophila 2300/99
Alcoy]
gi|295647671|gb|ADG23518.1| deoxyribodipyrimidine photo-lyase [Legionella pneumophila 2300/99
Alcoy]
Length = 471
Score = 43.1 bits (100), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 41/124 (33%), Positives = 57/124 (45%), Gaps = 16/124 (12%)
Query: 213 IIAAVLRKGAEVPEIGWC-------ESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLK 265
I + L K +P I W GE+ A + L + F+ L Y +R+ P K
Sbjct: 173 ITSDDLGKWKLLPAINWAARFSEYWTPGEEGAQKKL----NEFVVHHLSGYKRERDFPAK 228
Query: 266 PRALSGLSPYLHFGQISAQRC--ALEARKARKLCPEA-IDTFLEELIVRRELADNFCFYQ 322
A S LSP+LHFG+IS ALE K + C A ++ FL EL RE + ++
Sbjct: 229 -NATSRLSPHLHFGEISPWVILRALELAKLEQTCDLASLEHFLSEL-GWREFSVYLLYHF 286
Query: 323 PNYD 326
P D
Sbjct: 287 PKLD 290
>gi|146340206|ref|YP_001205254.1| deoxyribodipyrimidine photo-lyase [Bradyrhizobium sp. ORS 278]
gi|146193012|emb|CAL77021.1| Deoxyribodipyrimidine photo-lyase (DNA photolyase)
(Photoreactivating enzyme) [Bradyrhizobium sp. ORS 278]
Length = 415
Score = 43.1 bits (100), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 51/100 (51%), Gaps = 9/100 (9%)
Query: 231 ESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEA 290
++GE AA + L+ FL + Y DR+ P A S LSP+L FG+I+ ++ A
Sbjct: 139 QAGERAAQQRLRS----FLESTVSGYAADRDRP-DIDATSRLSPHLRFGEITPRQIWHAA 193
Query: 291 RKARKLCP---EAIDTFLEELIVRRELADNFCFYQPNYDS 327
R A + P + ID FL E I RE + + + P+ S
Sbjct: 194 RFAAEERPAQAKGIDKFLSE-IGWREFSRHLLYNNPDLAS 232
>gi|194334030|ref|YP_002015890.1| deoxyribodipyrimidine photo-lyase [Prosthecochloris aestuarii DSM
271]
gi|194311848|gb|ACF46243.1| Deoxyribodipyrimidine photo-lyase [Prosthecochloris aestuarii DSM
271]
Length = 477
Score = 42.7 bits (99), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 80/319 (25%), Positives = 133/319 (41%), Gaps = 52/319 (16%)
Query: 27 KRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRG- 85
KR V+ W +D R+ DN AL A ++ +PV + L D G Q+G R
Sbjct: 2 KRKTVICWFRQDLRLEDNPALFVAAEEGYV--LPVYI---LDDSSPGT--WQMGSATRCW 54
Query: 86 LRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTD--FSPLREIRRCKDKICN 143
L ++ +F +F+GE + + R+ A +V + + P R ++R +
Sbjct: 55 LHHSLVSLNRSFDGKLGIFRGEPLEILKTLARQHKAEKIVWNRCYEPWR-MKRDQGIKAT 113
Query: 144 RVSDSVTIHEVDAHNVVPVWVASEKLE--------YSAKTLRGKINKLLPEYLIDYP--- 192
++ + EV + N +W E L+ ++ RG +N L P + P
Sbjct: 114 LQAEGI---EVSSFNGSLLWEPHEVLKQNNTPYRVFTPFFRRGCLNALPPRTPLPAPQRM 170
Query: 193 MLEQPIEKWTGTRQ-----SIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDG 247
++ I+ + SI WDS + I GE++A + L
Sbjct: 171 LMADTIDNSISVQDLNLLPSIPWDSQL------------ISHWSVGENSARQSLLR---- 214
Query: 248 FLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEE 307
FL + L Y R+ P + +S LSP LHFG++S EA++ + +D FL E
Sbjct: 215 FLDQGLNGYKEGRDFPGQ-NHVSRLSPALHFGELSPNTVWYEAKRCGS--GQDLDHFLSE 271
Query: 308 LIVRRELADNFCFYQPNYD 326
L RE A ++ N+D
Sbjct: 272 L-GWREFAYTLLYH--NHD 287
>gi|448734435|ref|ZP_21716661.1| deoxyribodipyrimidine photolyase [Halococcus salifodinae DSM 8989]
gi|445800483|gb|EMA50838.1| deoxyribodipyrimidine photolyase [Halococcus salifodinae DSM 8989]
Length = 479
Score = 42.7 bits (99), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 65/272 (23%), Positives = 107/272 (39%), Gaps = 35/272 (12%)
Query: 31 VVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFL----GAKARQLGFMLRGL 86
V W D R DN AL+ AVD+ + FD+ + + F++ +
Sbjct: 5 AVVWFRTDLRTHDNEALVRAVDEYDTVLPVYCFDPREFDETMFDLPKTGPYRARFLVDSV 64
Query: 87 RLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICNRVS 146
R L+R++ + L + QG+ E+ +P E GA ++ +P E R I N V+
Sbjct: 65 RDLRRSLRQAGGDL-LVRQGKTENVVPQLAAEHGADIVHYHTTPATEER----AIENGVT 119
Query: 147 DSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQPIEKWTGTRQ 206
D + H +D+ + W K Y + L ++ ++ + Q +E R
Sbjct: 120 DGLDEHGIDSRD---FW---GKTLYHVEDLPTRVERIDDTFT----PWRQTVEDGATVRD 169
Query: 207 SIDWDSIIAAVLRKGAE---VPEIGWC-----ESGEDAAMEVLKGSKDGF--LTK----- 251
+D + I G E +P G E + AA+E + G G LT+
Sbjct: 170 PLDAPTSIVLPESAGDEPGTIPTPGDLGIEEREPDDRAAIEFVGGESAGLRRLTEYVWEG 229
Query: 252 -RLKNYPTDRNNPLKPRALSGLSPYLHFGQIS 282
L+ Y RN L S S +L G +S
Sbjct: 230 DHLREYKETRNGLLGADYSSKFSAWLAVGCLS 261
>gi|190891474|ref|YP_001978016.1| deoxyribodipyrimidine photo-lyase [Rhizobium etli CIAT 652]
gi|190696753|gb|ACE90838.1| deoxyribodipyrimidine photo-lyase protein [Rhizobium etli CIAT 652]
Length = 482
Score = 42.7 bits (99), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 48/108 (44%), Gaps = 10/108 (9%)
Query: 233 GEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARK 292
GE+ A E L+ F+ RL Y +R+ P KP A S LSP+L G+IS R R
Sbjct: 210 GEEGAQEKLRT----FIEDRLDGYKENRDYPAKP-ATSMLSPHLALGEISPARIWDATRG 264
Query: 293 ARKLCPEAIDTFLEELIVRRELADNFCFYQP-----NYDSLKGAWEWA 335
K P A + I R+ + + + P N+D +EW
Sbjct: 265 LSKHLPAADIVHFRKEIAWRDFSYHLLAHFPRLATANWDDRFDRFEWG 312
>gi|344204249|ref|YP_004789392.1| deoxyribodipyrimidine photo-lyase [Muricauda ruestringensis DSM
13258]
gi|343956171|gb|AEM71970.1| Deoxyribodipyrimidine photo-lyase [Muricauda ruestringensis DSM
13258]
Length = 437
Score = 42.7 bits (99), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 56/290 (19%), Positives = 121/290 (41%), Gaps = 38/290 (13%)
Query: 31 VVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAF----NLFDQFLGAKARQLGFMLRGL 86
+++W RD R+ DN QA +N+VPV F + + A AR + F+ + +
Sbjct: 6 ILFWFRRDLRLDDNVGFY----QALQNDVPVLPLFIFDTEILENLPKADAR-VTFIHKQI 60
Query: 87 RLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVT--DFSPLREIRRCKDKICNR 144
+ L + + F + +++ + T D+ P + R +
Sbjct: 61 QKLNNQLSANYGSGIAQFHDSPKAVFKKLIQDYTVEAVYTNHDYEPYAKKRDSQ------ 114
Query: 145 VSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQPIEKWTGT 204
I E+ N +P +++ + + + + Y++ P + + E + +
Sbjct: 115 ------IKEILVQNDIPFKTFKDQVIFEKEEV---VKDDGDPYVVYTPYVRKWKENFNPS 165
Query: 205 RQSIDWDSI--IAAVLRKGAEVPEIGWCESG-EDAAMEVLKGSKDGFLTKRLKNYPTDRN 261
+++D++ + L + +P++ + G E+++++V + L ++ Y R+
Sbjct: 166 VHLVEYDTLSDLRKNLYQSKSLPQLSLEDMGFEESSVKVPDFTVSSELIQK---YEDTRD 222
Query: 262 NPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVR 311
P K + S L P+L FG +S ++ +K E +TF ELI R
Sbjct: 223 YPAKEKGTSRLGPHLRFGTVSIRKM------VKKAVDEKNETFWNELIWR 266
>gi|422295899|gb|EKU23198.1| cryptochrome [Nannochloropsis gaditana CCMP526]
Length = 560
Score = 42.7 bits (99), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 42/154 (27%), Positives = 69/154 (44%), Gaps = 21/154 (13%)
Query: 18 VLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKAR 77
V K G+ R ++W + R+ DN AL+ A + A V F L F AK
Sbjct: 6 VSKPGAKGAARTVSLHWFRKGLRLHDNPALLEACEGATH----VYPVFILDPHF--AKPD 59
Query: 78 QLG-----FMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLV--TDFSP 130
+G FML+ ++ L N+ E L F+ +G+ + +P RE G S L +D P
Sbjct: 60 VIGVLRYRFMLQTIKNLDDNLREIGSRL-FVVKGQPAEALPRLFREWGVSKLTFESDTEP 118
Query: 131 LREIR-------RCKDKICNRVSDSVTIHEVDAH 157
++R K ++ + S T+H+ +A+
Sbjct: 119 YAKVRDRHVCELAAKHQVHVQTFPSHTLHDPEAY 152
>gi|410861788|ref|YP_006977022.1| deoxyribodipyrimidine photo-lyase [Alteromonas macleodii AltDE1]
gi|410819050|gb|AFV85667.1| deoxyribodipyrimidine photo-lyase [Alteromonas macleodii AltDE1]
Length = 474
Score = 42.7 bits (99), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 82/312 (26%), Positives = 128/312 (41%), Gaps = 49/312 (15%)
Query: 32 VYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLG-----FMLRGL 86
+ W +D RV+DN AL A D VP+ + FD+ R G ++ L
Sbjct: 7 IMWFRQDLRVKDNPALNAACDMGKI--VPIYI----FDE-SAPDGRMPGGASKWWLHHSL 59
Query: 87 RLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTD--FSPLREIRRCKDKICNR 144
+ L + + QI F+G+ + IP + AS + + + P +I R K I
Sbjct: 60 KSLNKRLNGHLQI----FKGDPQTLIPKLMESFNASSIFWNRCYEPW-QINRDK-AIKKS 113
Query: 145 VSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQP----IEK 200
+ DS +E + N +W + L+ R P Y +E+P
Sbjct: 114 LLDSD--YEAHSFNGSLLWEPMKVLKKDGTPYR----VFTPYYKNGCLQIEEPRYPKAPP 167
Query: 201 WTGTRQSIDWDSIIAAVLRKGAEVPEIGWCES-------GEDAAMEVLKGSKDGFLTKRL 253
T +D +S A L A +P I W ++ GED A + L F+
Sbjct: 168 ARITYADVDDNSDGLAAL---ALLPTIKWDDTIAKEWTPGEDGAADNLSD----FIENSA 220
Query: 254 KNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPE--AIDTFLEELIVR 311
+ Y R+ P + S LSP+LHFG++S + A K R E +I+T+L EL
Sbjct: 221 RRYKDGRDIP-SAKGTSRLSPHLHFGEVSPNQVWY-AIKDRFGTSEDKSIETYLSEL-GW 277
Query: 312 RELADNFCFYQP 323
RE + F+ P
Sbjct: 278 REFSYYLLFHFP 289
>gi|349688251|ref|ZP_08899393.1| deoxyribodipyrimidine photo-lyase [Gluconacetobacter oboediens
174Bp2]
Length = 461
Score = 42.7 bits (99), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 47/94 (50%), Gaps = 7/94 (7%)
Query: 231 ESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEA 290
+ GE AA L D F+ +++ Y T R P +P A SGLSPYL FG +SA++ A
Sbjct: 218 QPGEAAAHARL----DSFVAEQVHGYATRRELPAQP-ATSGLSPYLRFGHVSARQI-WHA 271
Query: 291 RKARKLCPEAIDTFLEELIVRRELADNFCFYQPN 324
A + FL E + R+ A + F P+
Sbjct: 272 VDATGQGDQDTACFLSE-VGWRDFAQSTLFDFPD 304
>gi|392532976|ref|ZP_10280113.1| deoxyribodipyrimidine photolyase [Pseudoalteromonas arctica A
37-1-2]
Length = 464
Score = 42.7 bits (99), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 59/268 (22%), Positives = 105/268 (39%), Gaps = 24/268 (8%)
Query: 31 VVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQ 90
++W RD R+ N ALI A++ K+ + V+ + Q A Q+ + R + LQ
Sbjct: 3 TLFWFRRDLRLFSNEALIQALNNGAKHAI-FFVSEKQWQQHQTAPI-QIDLLKRRVTYLQ 60
Query: 91 RNIEETFQILFFLFQGEAEDNIPNFVRECGAS----LLVTDFSPLREIRRCKDKI--CNR 144
+ + L + D + C A+ ++ L E+ R K + C+
Sbjct: 61 SQLADYGITLHVIEAPSFSDCTRELIDFCKANDVKHVIANTEYELNEVNRDKAILHECDE 120
Query: 145 VSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQPIEKWTGT 204
+S + T++E D + PV + K L +Y + L Q W T
Sbjct: 121 LSITFTLYEGDL--IAPVGTVKNQSNEMYKVFTPFKRAWLKQYQDTHFSLPQ----WPLT 174
Query: 205 RQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPL 264
+ +D + +L+ C E L D F+ +L +Y R+ P
Sbjct: 175 SEPTKFDE--SGLLKSDG-------CSDKWPVDDETLSTVVDNFICDKLTSYDDQRDIP- 224
Query: 265 KPRALSGLSPYLHFGQISAQRCALEARK 292
+ SGLSPYL G +S ++ + ++
Sbjct: 225 SVKGTSGLSPYLALGIVSTKQLLINIQQ 252
>gi|184201932|ref|YP_001856139.1| deoxyribodipyrimidine photo-lyase [Kocuria rhizophila DC2201]
gi|183582162|dbj|BAG30633.1| deoxyribodipyrimidine photo-lyase [Kocuria rhizophila DC2201]
Length = 441
Score = 42.7 bits (99), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 76/278 (27%), Positives = 107/278 (38%), Gaps = 64/278 (23%)
Query: 35 MFRDQ-RVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLG-----FMLRGLRL 88
+FRD RV D+ AL AV PV + L ++ G R LG ++ L
Sbjct: 6 LFRDDLRVTDHPALHEAVSHGE----PVVCLYVLDEESEGV--RPLGGAAKWWLHHSLTS 59
Query: 89 LQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTD---FSPLREIRRCKDKIC--N 143
L ++ E + L +G A +P+ VRE GA L+ + P R + + N
Sbjct: 60 LASDLSE-LGVPLTLRRGPAGKVVPHVVRETGADRLLWNRRYGGPERAVDAGLKEWAGEN 118
Query: 144 RVSD------------SVTIHEVDAHNV-VPVWVA--SEKLEYSAKTLRGKINKLLP--- 185
V +V+ D + V P W A S I+ P
Sbjct: 119 GVEAHSYAGSLMFEPWTVSTQNGDPYRVFTPFWRACTSGPPPREPYPAPSSIDHADPAPA 178
Query: 186 -EYLIDYPMLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGS 244
E L+D+ +L DW +A GE AA E L
Sbjct: 179 SEDLVDWELLPT----------HPDWSGGLART------------WTVGERAAHERL--- 213
Query: 245 KDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQIS 282
D FL +RL Y DR+ P +P A SGLSP+L +G+IS
Sbjct: 214 -DEFLDERLPRYTQDRDVPARP-ATSGLSPHLRWGEIS 249
>gi|332529962|ref|ZP_08405912.1| deoxyribodipyrimidine photolyase [Hylemonella gracilis ATCC 19624]
gi|332040435|gb|EGI76811.1| deoxyribodipyrimidine photolyase [Hylemonella gracilis ATCC 19624]
Length = 501
Score = 42.7 bits (99), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 74/308 (24%), Positives = 119/308 (38%), Gaps = 38/308 (12%)
Query: 31 VVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQ 90
+ W+ D R+ DN AL HA + + + V V + + +L F R L LL
Sbjct: 3 ALVWLRNDLRLHDNPAL-HAAAELRQGVIAVYVHCDAYVTRFPIAPSRLDFARRHLHLLT 61
Query: 91 RNIEE---TFQILFFLFQGEAEDNIPNFVRECGASLLVTDFS-PLREIRRCKDKICNRV- 145
+ Q+L E + R+ G S + PL E+ R D+ N++
Sbjct: 62 TELARHHIALQVLRVAQVSEIAPALARLARDHGISHCFFNAEYPLDELNR--DQQVNQLL 119
Query: 146 -SDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRG------KINKLLPEYLIDYPMLEQPI 198
+ VT+ V+P + K ++ LLP ++ P + +
Sbjct: 120 RAQGVTVKRCHDRVVIPPGKVRNEAGTPYKVFTPYKRKWLQLASLLPLRPVEAPAHQAAL 179
Query: 199 EKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLKNYPT 258
+ + Q ID L +G E+ ++ + A V + F+ + L +Y T
Sbjct: 180 PCPSASAQDID-------HLFEGQELRDL---STPWPAGEAVARARLQRFVAQDLDHYQT 229
Query: 259 DRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKL----CPEAIDTFLEELIVRREL 314
R+ P SGLSPYL G +S R AL A +R + T++ ELI R
Sbjct: 230 QRDLPAV-AGTSGLSPYLAIGALSP-RQALAAVLSRTGGDWNANAGVSTWISELIWRE-- 285
Query: 315 ADNFCFYQ 322
FYQ
Sbjct: 286 -----FYQ 288
>gi|312796611|ref|YP_004029533.1| Deoxyribodipyrimidine photolyase [Burkholderia rhizoxinica HKI 454]
gi|312168386|emb|CBW75389.1| Deoxyribodipyrimidine photolyase (EC 4.1.99.3) [Burkholderia
rhizoxinica HKI 454]
Length = 522
Score = 42.7 bits (99), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 48/103 (46%), Gaps = 22/103 (21%)
Query: 231 ESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQR---CA 287
+ GE A L D FL L Y + R+ P +A S LSPYL FG +SA++ A
Sbjct: 229 QCGEQAGQTQL----DAFLANALTRYASGRDVPAM-QATSRLSPYLRFGNLSARQVWHAA 283
Query: 288 LEARKARKLCPEA---------IDTFLEELIVRRELADNFCFY 321
L A + + C +A +D FL+EL R F +Y
Sbjct: 284 LSAARVGRHCGDARRTCTASSGVDKFLDELGWR-----EFSYY 321
>gi|337755263|ref|YP_004647774.1| deoxyribodipyrimidine photolyase [Francisella sp. TX077308]
gi|336446868|gb|AEI36174.1| Deoxyribodipyrimidine photolyase [Francisella sp. TX077308]
Length = 468
Score = 42.7 bits (99), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 54/107 (50%), Gaps = 17/107 (15%)
Query: 225 PEIGW------CESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHF 278
P++ W + GE A+ ++L + FL ++K Y T R+ + + S LSPYLHF
Sbjct: 184 PKLSWQNIIDQWQIGEVASHQIL----EEFLDSKVKEYKTARD-FMSTDSTSKLSPYLHF 238
Query: 279 GQISAQRCALEARKARKLCPEAIDTFLEELIVRRELADNFCFYQPNY 325
G+IS + A ++ + F++EL+ R +F +YQ Y
Sbjct: 239 GEISPNQI-FNAVQSLDYIGNNEEHFIKELVWR-----DFSYYQIYY 279
>gi|388457015|ref|ZP_10139310.1| deoxyribodipyrimidine photolyase [Fluoribacter dumoffii Tex-KL]
Length = 469
Score = 42.7 bits (99), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 37/110 (33%), Positives = 51/110 (46%), Gaps = 17/110 (15%)
Query: 213 IIAAVLRKGAEVPEIGWCES-------GEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLK 265
+ + VL+ +P I W GE A + L F+ L +Y +R+ P+K
Sbjct: 173 VQSEVLKDWKLLPAINWAAQFSEYWTPGEAGAQQKLHE----FIEHHLNDYKKNRDFPIK 228
Query: 266 PRALSGLSPYLHFGQISAQRCALEARKARKLCP----EAIDTFLEELIVR 311
A S LSP+LHFG+IS L A + KL P + D FL EL R
Sbjct: 229 -NATSRLSPHLHFGEISPW-TILRAIELAKLNPNCDLSSADHFLSELGWR 276
>gi|261278636|pdb|3CVX|A Chain A, Drosophila Melanogaster (6-4) Photolyase H369m Mutant
Bound To Ds Dna With A T-T (6-4) Photolesion
Length = 543
Score = 42.4 bits (98), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 79/351 (22%), Positives = 138/351 (39%), Gaps = 28/351 (7%)
Query: 1 MASLTPPSTAVQPGRIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNV- 59
MAS + P K G +D +R +V+W + R+ DN AL H AN
Sbjct: 1 MASWSHPQFEKGASTSLYKKAGLMDSQRSTLVHWFRKGLRLHDNPALSHIFTAANAAPGR 60
Query: 60 ----PVAVAFNLFDQFLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNF 115
P+ + ++ A + F+ + L L + + L F+ +G+ + P
Sbjct: 61 YFVRPIFILDPGILDWMQVGANRWRFLQQTLEDLDNQLRKLNSRL-FVVRGKPAEVFPRI 119
Query: 116 VRECGASLLV--TDFSPLREIRRCKDKICNRVSDSVTIHEVDAHNVV-PVWVASEKLEYS 172
+ +L TD P R + + ++ V + +H + P V ++ L +
Sbjct: 120 FKSWRVEMLTFETDIEPYSVTRDAAVQKLAK-AEGVRVETHCSHTIYNPELVIAKNLGKA 178
Query: 173 AKTLRG--------KINKLL--PEYLIDYPMLEQPIEKWTGTRQSIDWDSIIAAVLRKGA 222
T + K+ K+L PE L + P P + + S +D L K
Sbjct: 179 PITYQKFLGIVEQLKVPKVLGVPEKLKNMPT---PPKDEVEQKDSAAYDCPTMKQLVKRP 235
Query: 223 EVPEIGWCESGEDAAMEVLKGS-KDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQI 281
E GE A+ ++ S KD R + P N L+P + + LSPYL FG +
Sbjct: 236 EELGPNKFPGGETEALRRMEESLKDEIWVARFEK-PNTAPNSLEP-STTVLSPYLKFGCL 293
Query: 282 SAQRCALEARKARKLCPEAIDTFLEEL--IVRRELADNFCFYQPNYDSLKG 330
SA+ + ++ K P+ + + ++ RE +PN+D + G
Sbjct: 294 SARLFNQKLKEIIKRQPKHSQPPVSLIGQLMWREFYYTVAAAEPNFDRMLG 344
>gi|261278633|pdb|3CVW|A Chain A, Drosophila Melanogaster (6-4) Photolyase H365n Mutant
Bound To Ds Dna With A T-T (6-4) Photolesion And
Cofactor F0
Length = 543
Score = 42.4 bits (98), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 79/351 (22%), Positives = 138/351 (39%), Gaps = 28/351 (7%)
Query: 1 MASLTPPSTAVQPGRIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNV- 59
MAS + P K G +D +R +V+W + R+ DN AL H AN
Sbjct: 1 MASWSHPQFEKGASTSLYKKAGLMDSQRSTLVHWFRKGLRLHDNPALSHIFTAANAAPGR 60
Query: 60 ----PVAVAFNLFDQFLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNF 115
P+ + ++ A + F+ + L L + + L F+ +G+ + P
Sbjct: 61 YFVRPIFILDPGILDWMQVGANRWRFLQQTLEDLDNQLRKLNSRL-FVVRGKPAEVFPRI 119
Query: 116 VRECGASLLV--TDFSPLREIRRCKDKICNRVSDSVTIHEVDAHNVV-PVWVASEKLEYS 172
+ +L TD P R + + ++ V + +H + P V ++ L +
Sbjct: 120 FKSWRVEMLTFETDIEPYSVTRDAAVQKLAK-AEGVRVETHCSHTIYNPELVIAKNLGKA 178
Query: 173 AKTLRG--------KINKLL--PEYLIDYPMLEQPIEKWTGTRQSIDWDSIIAAVLRKGA 222
T + K+ K+L PE L + P P + + S +D L K
Sbjct: 179 PITYQKFLGIVEQLKVPKVLGVPEKLKNMPT---PPKDEVEQKDSAAYDCPTMKQLVKRP 235
Query: 223 EVPEIGWCESGEDAAMEVLKGS-KDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQI 281
E GE A+ ++ S KD R + P N L+P + + LSPYL FG +
Sbjct: 236 EELGPNKFPGGETEALRRMEESLKDEIWVARFEK-PNTAPNSLEP-STTVLSPYLKFGCL 293
Query: 282 SAQRCALEARKARKLCPEAIDTFLEEL--IVRRELADNFCFYQPNYDSLKG 330
SA+ + ++ K P+ + + ++ RE +PN+D + G
Sbjct: 294 SARLFNQKLKEIIKRQPKHSQPPVSLIGQLMWREFYYTVAAAEPNFDRMLG 344
>gi|211939158|pdb|3CVU|A Chain A, Drosophila Melanogaster (6-4) Photolyase Bound To Ds Dna
With A T-T (6-4) Photolesion
gi|211939161|pdb|3CVY|A Chain A, Drosophila Melanogaster (6-4) Photolyase Bound To Repaired
Ds Dna
gi|225697970|pdb|2WB2|A Chain A, Drosophila Melanogaster (6-4) Photolyase Bound To Double
Stranded Dna Containing A T(6-4)c Photolesion
gi|240104285|pdb|3CVV|A Chain A, Drosophila Melanogaster (6-4) Photolyase Bound To Ds Dna
With A T-T (6-4) Photolesion And F0 Cofactor
gi|289526487|pdb|2WQ6|A Chain A, Structure Of The 6-4 Photolyase Of D. Melanogaster In
Complex With The Non-Natural N4-Methyl T(Dewar)c Lesion
gi|289526490|pdb|2WQ7|A Chain A, Structure Of The 6-4 Photolyase Of D. Melanogaster In
Complex With The Non-Natural N4-Methyl T(6-4)c Lesion
Length = 543
Score = 42.4 bits (98), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 79/351 (22%), Positives = 138/351 (39%), Gaps = 28/351 (7%)
Query: 1 MASLTPPSTAVQPGRIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNV- 59
MAS + P K G +D +R +V+W + R+ DN AL H AN
Sbjct: 1 MASWSHPQFEKGASTSLYKKAGLMDSQRSTLVHWFRKGLRLHDNPALSHIFTAANAAPGR 60
Query: 60 ----PVAVAFNLFDQFLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNF 115
P+ + ++ A + F+ + L L + + L F+ +G+ + P
Sbjct: 61 YFVRPIFILDPGILDWMQVGANRWRFLQQTLEDLDNQLRKLNSRL-FVVRGKPAEVFPRI 119
Query: 116 VRECGASLLV--TDFSPLREIRRCKDKICNRVSDSVTIHEVDAHNVV-PVWVASEKLEYS 172
+ +L TD P R + + ++ V + +H + P V ++ L +
Sbjct: 120 FKSWRVEMLTFETDIEPYSVTRDAAVQKLAK-AEGVRVETHCSHTIYNPELVIAKNLGKA 178
Query: 173 AKTLRG--------KINKLL--PEYLIDYPMLEQPIEKWTGTRQSIDWDSIIAAVLRKGA 222
T + K+ K+L PE L + P P + + S +D L K
Sbjct: 179 PITYQKFLGIVEQLKVPKVLGVPEKLKNMPT---PPKDEVEQKDSAAYDCPTMKQLVKRP 235
Query: 223 EVPEIGWCESGEDAAMEVLKGS-KDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQI 281
E GE A+ ++ S KD R + P N L+P + + LSPYL FG +
Sbjct: 236 EELGPNKFPGGETEALRRMEESLKDEIWVARFEK-PNTAPNSLEP-STTVLSPYLKFGCL 293
Query: 282 SAQRCALEARKARKLCPEAIDTFLEEL--IVRRELADNFCFYQPNYDSLKG 330
SA+ + ++ K P+ + + ++ RE +PN+D + G
Sbjct: 294 SARLFNQKLKEIIKRQPKHSQPPVSLIGQLMWREFYYTVAAAEPNFDRMLG 344
>gi|262278230|ref|ZP_06056015.1| deoxyribodipyrimidine photolyase FAD-binding [Acinetobacter
calcoaceticus RUH2202]
gi|262258581|gb|EEY77314.1| deoxyribodipyrimidine photolyase FAD-binding [Acinetobacter
calcoaceticus RUH2202]
Length = 480
Score = 42.4 bits (98), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 65/138 (47%), Gaps = 16/138 (11%)
Query: 232 SGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEAR 291
+GED A+E L D F+ L +Y +R+ P + S LSPYL+ G +S ++C
Sbjct: 215 TGEDFALEQL----DLFINDHLSHYKLERDFP-NVKGTSQLSPYLNLGILSIRQCLQALF 269
Query: 292 KAR----KLCPEAIDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKR 347
+A L E T+L+EL+ RE + F ++ + + + + + + +
Sbjct: 270 RAEHGNFHLTNEGQQTWLDELL-WREFYQHILF---DFPHVSKHYPFKKNTQNIKWENNQ 325
Query: 348 EHIYTKEQFEKAQTADPV 365
EH+ ++ QT P+
Sbjct: 326 EHLVA---WQNGQTGIPI 340
>gi|89069099|ref|ZP_01156472.1| deoxyribodipyrimidine photolyase [Oceanicola granulosus HTCC2516]
gi|89045272|gb|EAR51338.1| deoxyribodipyrimidine photolyase [Oceanicola granulosus HTCC2516]
Length = 478
Score = 42.4 bits (98), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 56/122 (45%), Gaps = 7/122 (5%)
Query: 214 IAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLS 273
+ A +R+GA+V GE AA L + F+ +RL +YP RN SGLS
Sbjct: 186 LGAEMRRGADVVAEH-VVVGEAAAARRL----ERFVEERLADYPQARNR-FDVEGTSGLS 239
Query: 274 PYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVRRELADNFCFYQPNYDSLKGAWE 333
L G+ISA+ C AR +TFL+E + R+ A + + P + E
Sbjct: 240 ENLAVGEISARSCWQAGLMARDAGNPGAETFLKE-VAWRDFAYHLLHHTPRLATDNWRPE 298
Query: 334 WA 335
WA
Sbjct: 299 WA 300
>gi|384422583|ref|YP_005631942.1| Deoxyribodipyrimidine photolyase [Vibrio cholerae LMA3984-4]
gi|327485291|gb|AEA79697.1| Deoxyribodipyrimidine photolyase [Vibrio cholerae LMA3984-4]
Length = 469
Score = 42.4 bits (98), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 47/104 (45%), Gaps = 4/104 (3%)
Query: 236 AAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCA--LEARKA 293
A E ++ GF +R+++Y R+ P + S LSPYL G +SA++C L +
Sbjct: 204 ADFETVRAQLRGFCRERVQDYHQARDFPAR-EGTSSLSPYLAIGVLSARQCVARLYHESS 262
Query: 294 RKLCPEAIDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARK 337
E +L ELI RE + +PN + EW +
Sbjct: 263 MGELSEGAQVWLSELIW-REFYQHLVAIEPNLSKSRDFVEWGAR 305
>gi|148256271|ref|YP_001240856.1| deoxyribodipyrimidine photo-lyase type I [Bradyrhizobium sp. BTAi1]
gi|146408444|gb|ABQ36950.1| deoxyribodipyrimidine photo-lyase type I [Bradyrhizobium sp. BTAi1]
Length = 481
Score = 42.4 bits (98), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 35/96 (36%), Positives = 47/96 (48%), Gaps = 9/96 (9%)
Query: 232 SGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEAR 291
+GE AA L FL ++ Y DR+ P A S LSP+L FG+IS ++ AR
Sbjct: 206 AGERAAQARLAK----FLETTVRGYAADRDRP-DIEATSRLSPHLRFGEISPRQIWHAAR 260
Query: 292 KARKLCP---EAIDTFLEELIVRRELADNFCFYQPN 324
A + P ID FL EL RE + + F P+
Sbjct: 261 FAAEQQPAFARGIDKFLSELGW-REFSRHLLFNNPD 295
>gi|349701797|ref|ZP_08903426.1| deoxyribodipyrimidine photo-lyase [Gluconacetobacter europaeus LMG
18494]
Length = 466
Score = 42.4 bits (98), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 32/56 (57%), Gaps = 5/56 (8%)
Query: 231 ESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRC 286
+ GE AA L D F+ +R+ Y T R P +P A SGLSPYL FG +S ++
Sbjct: 206 QPGEAAAHARL----DAFVAERVHGYATQRELPAQP-ATSGLSPYLRFGHVSPRQV 256
>gi|307945306|ref|ZP_07660642.1| cryptochrome-2 [Roseibium sp. TrichSKD4]
gi|307771179|gb|EFO30404.1| cryptochrome-2 [Roseibium sp. TrichSKD4]
Length = 486
Score = 42.4 bits (98), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 49/102 (48%), Gaps = 8/102 (7%)
Query: 229 WCESGEDAAMEVLKGSKDG---FLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQR 285
W E E+ +G+++ FL + L Y RN P P +S LSP+L FG+IS +
Sbjct: 196 WAEGWENVWTPGEQGARERLCVFLDQGLNGYGELRNRPDLPN-VSRLSPHLRFGEISPTQ 254
Query: 286 CALEARKARKLCPEA---IDTFLEELIVRRELADNFCFYQPN 324
+ + PE D FL E IV RE + + F+ P+
Sbjct: 255 IWATTQMHADVHPEHATDADKFLSE-IVWREFSYHLLFHFPD 295
>gi|338731144|ref|YP_004660536.1| DNA photolyase FAD-binding protein [Thermotoga thermarum DSM 5069]
gi|335365495|gb|AEH51440.1| DNA photolyase FAD-binding protein [Thermotoga thermarum DSM 5069]
Length = 420
Score = 42.4 bits (98), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 68/276 (24%), Positives = 107/276 (38%), Gaps = 48/276 (17%)
Query: 32 VYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFD--QFLG-AKARQLGFMLRGLRL 88
++W+ RD R+ DN LIHA + N F LFD +F G + +++ F+ R L
Sbjct: 6 IWWIRRDMRIEDNRVLIHAAEDGN-----AVFPFYLFDPSEFTGEGQEKKVNFIFRQLVN 60
Query: 89 LQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICNRVSDS 148
L R + + F + G+A+D L T F K C + S
Sbjct: 61 LNRELAK-FGTAITICYGKAKDVF---------GWLKTQFP------EAKVFTCVELGHS 104
Query: 149 VTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQPIEKWTGTRQS- 207
+A +PV SE S +R K K+L + + +EK Q
Sbjct: 105 ACQAVKEAEKFLPVVEVSEGYLLSFDKIRSKKGKILTTFFHFKNAAYKELEKLEAIYQEK 164
Query: 208 --IDWDSI-IAAVLRKGAEVPE--------IGW------CESGEDAAMEVLKGSKDGFLT 250
++W S+ + V + G E E +G+ E +A E+L+
Sbjct: 165 PKVEWLSVSMPCVYKIGEEKAEKLDFSLSSLGFEEIELVHEGAVKSAEELLER-----FE 219
Query: 251 KRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRC 286
K L Y R+ P S LS +L +G IS ++
Sbjct: 220 KILPEYEKLRDFP-AVNGTSLLSAHLRYGTISIRKV 254
>gi|119503382|ref|ZP_01625466.1| DNA photolyase [marine gamma proteobacterium HTCC2080]
gi|119461028|gb|EAW42119.1| DNA photolyase [marine gamma proteobacterium HTCC2080]
Length = 481
Score = 42.4 bits (98), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 47/99 (47%), Gaps = 16/99 (16%)
Query: 227 IGWCE---SGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISA 283
GW E GE A L+ FL + +Y R+ P +P S LSPYL FG+IS
Sbjct: 196 TGWEELWSPGEAGASGALRT----FLDSHVDSYGNGRDFPAQPNT-SRLSPYLKFGEISP 250
Query: 284 QRCALEARKARKLCPE---AIDTFLEELIVRRELADNFC 319
++ A+ ++ P+ +ID FL E+ R FC
Sbjct: 251 RQIWWTAQNTKQSNPDEGSSIDKFLSEIGWRE-----FC 284
>gi|218516572|ref|ZP_03513412.1| deoxyribodipyrimidine photo-lyase protein [Rhizobium etli 8C-3]
Length = 277
Score = 42.4 bits (98), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 42/91 (46%), Gaps = 5/91 (5%)
Query: 233 GEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARK 292
GE+ A E L+ F+ RL Y +R+ P KP A S LSP+L G+IS R R
Sbjct: 5 GEEGAQEKLRT----FIEDRLDGYKENRDYPAKP-ATSMLSPHLALGEISPARIWDATRG 59
Query: 293 ARKLCPEAIDTFLEELIVRRELADNFCFYQP 323
K P A + I R+ + + + P
Sbjct: 60 LSKHLPAADIVHFRKEIAWRDFSYHLLAHFP 90
>gi|389772571|ref|ZP_10192146.1| deoxyribodipyrimidine photo lyase [Rhodanobacter sp. 115]
gi|388429582|gb|EIL86900.1| deoxyribodipyrimidine photo lyase [Rhodanobacter sp. 115]
Length = 471
Score = 42.4 bits (98), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 58/121 (47%), Gaps = 22/121 (18%)
Query: 208 IDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPR 267
I WDS +A + GED A E+L + F + +Y R+ P +
Sbjct: 191 IGWDSGLAET------------WQPGEDGAHELL----EIFADDAIGDYAHARDLPAR-H 233
Query: 268 ALSGLSPYLHFGQISAQRCALEA-RKARKLCPEA---IDTFLEELIVRRELADNFCFYQP 323
S LSP+LHFG+IS ++ E R+AR + + I+ +L EL RE A + ++ P
Sbjct: 234 GTSRLSPHLHFGEISPRQIHFELDRRARAIDAKRRPDIEPYLRELGW-REFAHHLLYHFP 292
Query: 324 N 324
+
Sbjct: 293 H 293
>gi|85818699|gb|EAQ39859.1| DNA photolyase/cryptochrome, animal cryptochrome and (6-4)
photolyase subfamily [Dokdonia donghaensis MED134]
Length = 494
Score = 42.0 bits (97), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 45/95 (47%), Gaps = 11/95 (11%)
Query: 246 DGFLTKRLKNYPTDRNNPLKPR-ALSGLSPYLHFGQISAQRCALEARKARKLCP--EAID 302
D FL R+KNY + PL R + S LSPY+ +G +S + A+K R+ P ID
Sbjct: 208 DSFLRDRIKNYNAHISKPLLARKSCSRLSPYIAWGNLSVREVWQRAKKLRQASPYKRQID 267
Query: 303 TFLEEL------IVRRELADNFCFYQPN--YDSLK 329
F L I + E+ D F N + SLK
Sbjct: 268 GFTSRLRWSAHFIQKFEMEDTMEFVSVNRGFHSLK 302
>gi|374623477|ref|ZP_09695986.1| Deoxyribodipyrimidine photo-lyase [Ectothiorhodospira sp. PHS-1]
gi|373942587|gb|EHQ53132.1| Deoxyribodipyrimidine photo-lyase [Ectothiorhodospira sp. PHS-1]
Length = 485
Score = 42.0 bits (97), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 58/122 (47%), Gaps = 23/122 (18%)
Query: 208 IDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPR 267
I WD +AA + GED A L + FL + Y TDR+ P +P
Sbjct: 192 IPWDQGMAACW------------QPGEDGAHRAL----ERFLAGAVLTYKTDRDLPGQP- 234
Query: 268 ALSGLSPYLHFGQISAQRCA-----LEARKARKLCPEAIDTFLEELIVRRELADNFCFYQ 322
S +SP+LHFG+I ++ L+A+ A +++TF+ E I RE A + F+
Sbjct: 235 GTSRMSPHLHFGEIGPRQLIRACRYLQAQGAGATAGASVETFVRE-IGWREFAFHLLFHF 293
Query: 323 PN 324
P+
Sbjct: 294 PH 295
>gi|156039880|ref|XP_001587047.1| hypothetical protein SS1G_12076 [Sclerotinia sclerotiorum 1980]
gi|154696133|gb|EDN95871.1| hypothetical protein SS1G_12076 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 595
Score = 42.0 bits (97), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 57/115 (49%), Gaps = 11/115 (9%)
Query: 31 VVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNL----FDQFLGAKARQLGFMLRGL 86
VV+W D R RDN AL A ++A + VP+ + + F+ L A R + F+LR L
Sbjct: 111 VVHWFKCDLRTRDNTALWMASEKAKEKGVPLVAMYIISPQDFEAHLTAPVR-VDFILRTL 169
Query: 87 RLLQRNIEETFQILFFLFQGE----AEDNIPNFVRECGASLLVTDFS-PLREIRR 136
+L+R++ E + ++ E E I + E GAS L + + E+RR
Sbjct: 170 EILKRDLAE-LDVPLYVETVEKRKGVEGRILELLGEWGASHLYANMEYEVDELRR 223
>gi|86749484|ref|YP_485980.1| deoxyribodipyrimidine photolyase [Rhodopseudomonas palustris HaA2]
gi|86572512|gb|ABD07069.1| Deoxyribodipyrimidine photo-lyase type I [Rhodopseudomonas
palustris HaA2]
Length = 487
Score = 42.0 bits (97), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 83/331 (25%), Positives = 130/331 (39%), Gaps = 43/331 (12%)
Query: 30 PVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLG-----FMLR 84
PV+ W D R+ D+ AL HA + + + V Q +AR +G ++ +
Sbjct: 8 PVIVWFRDDLRLSDHPAL-HAAAASGSPLICIYVHDEQSPQLRPPQARPIGGAARWWLAQ 66
Query: 85 GLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICNR 144
LR L +E+ L L +G A + R+ A+ + + + R D +
Sbjct: 67 SLRALAAELEQRGARLI-LRRGPAAAIVGELARQVDAAAVHWNEIEIAPHRAIADDLAET 125
Query: 145 VSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEY------LIDYPMLEQPI 198
+S S H +++ VA ++ +T G+ ++ + L D P +P+
Sbjct: 126 LSMSGIDHHRHPGDLL---VAPSEI----RTKDGRGLRVFTPFWRRVLGLGDPP---KPL 175
Query: 199 EKWTGTRQSIDWDSIIAAVLRKGAEVPE------IGWCESGEDAAMEVLKGSKDGFLTKR 252
R D S A + P+ W GE AA ++L D R
Sbjct: 176 PAPAMLRAGPDIASDDPATWQLEPTAPDWAGGLRASWT-PGERAAHDLLTAFLD-----R 229
Query: 253 LKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEAR---KARKLCPEAIDTFLEEL- 308
L Y DR+ P + A S LSP+L FG+IS ++ AR R ID FL EL
Sbjct: 230 LPGYAADRDRPDR-DATSLLSPHLRFGEISPRQLWYAARFAAAKRPAIAADIDKFLSELG 288
Query: 309 ---IVRRELADNFCFYQPNYDSLKGAWEWAR 336
R L D+ + N S A+ W R
Sbjct: 289 WREFCRHLLHDHPDLAERNLQSAFDAFPWTR 319
>gi|167570597|ref|ZP_02363471.1| deoxyribodipyrimidine photolyase [Burkholderia oklahomensis C6786]
Length = 486
Score = 42.0 bits (97), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 78/326 (23%), Positives = 116/326 (35%), Gaps = 70/326 (21%)
Query: 30 PVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLG----FMLRG 85
P V W D RV D+ AL+ A + PV A+ +FD+ G R LG + L G
Sbjct: 9 PAVVWFRDDLRVSDHPALVRAAESGR----PVIGAY-VFDECAGG--RPLGGAARWWLHG 61
Query: 86 LRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICNRV 145
L G+ D I +F GA + + R + + N V
Sbjct: 62 SLRALDAALAALGSRLVLLSGDEADTITSFAAALGAGAVYWN----RRYALAQRAVDNTV 117
Query: 146 SDSVTIHEVDAHNVVPVWVASEKLEYS-AKTLRGKINKLLPEYLIDYPMLEQPIEKWTGT 204
++ +D V + AS E T G+ ++ Y
Sbjct: 118 QTALEARGID----VETFNASLLFEPGDLVTDSGRPYQVFTAYWR------------AAM 161
Query: 205 RQSIDWDSIIAAVLRKGAEVP-----------EIG-------WCES-------GEDAAME 239
R+ + + A KG E+P +G W GEDAA
Sbjct: 162 RRGVHAAPLAAPRRLKGCELPPRLAQRQVELDALGLAPARPDWAGGLRETWTCGEDAAHR 221
Query: 240 VLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQR---CALEARKARKL 296
L+ F+ RL Y T R+ P + S LSP++ FG +S ++ A++A
Sbjct: 222 RLRA----FVDSRLGGYATGRDRP-GAASTSRLSPFVRFGNLSVRQVWHAAVDAHAHGAA 276
Query: 297 CPEAIDTFLEELIVRRELADNFCFYQ 322
+DTF EL R FC+ Q
Sbjct: 277 TQADLDTFCRELGWR-----EFCYGQ 297
>gi|421852148|ref|ZP_16284838.1| deoxyribodipyrimidine photolyase [Acetobacter pasteurianus subsp.
pasteurianus LMG 1262 = NBRC 106471]
gi|371479515|dbj|GAB30041.1| deoxyribodipyrimidine photolyase [Acetobacter pasteurianus subsp.
pasteurianus LMG 1262 = NBRC 106471]
Length = 473
Score = 42.0 bits (97), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 35/98 (35%), Positives = 44/98 (44%), Gaps = 10/98 (10%)
Query: 219 RKGAEVPEI--GWCESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYL 276
R G + P + GW SGE AA L F+ L +Y T R+ P S LSPY+
Sbjct: 195 RVGTKPPALPPGWT-SGEKAAHANLHR----FIENALADYETQRDRADAPHGTSLLSPYI 249
Query: 277 HFGQISAQRCALEARKARKLCPE---AIDTFLEELIVR 311
GQIS ++ R A P A + FL EL R
Sbjct: 250 RVGQISVRQIWHAIRHAEHQNPHLATAAEKFLAELGWR 287
>gi|375135573|ref|YP_004996223.1| deoxyribodipyrimidine photolyase (photoreactivation), FAD-binding
protein [Acinetobacter calcoaceticus PHEA-2]
gi|325123018|gb|ADY82541.1| deoxyribodipyrimidine photolyase (photoreactivation), FAD-binding
protein [Acinetobacter calcoaceticus PHEA-2]
Length = 480
Score = 42.0 bits (97), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 76/313 (24%), Positives = 118/313 (37%), Gaps = 63/313 (20%)
Query: 34 WMFRDQRVRDNWALIHAVDQA--------------NKNNVPVAVAFNLFD-QFLGAKARQ 78
W +D RVRD+ AL HA Q ++ P+ + F L Q L + Q
Sbjct: 9 WFRQDLRVRDHAALWHASQQGPCIGLIILSPEQWQTHHDAPIKINFYLRQLQQLKKELEQ 68
Query: 79 LGFMLR--------------GLRLLQRNIEETF-QILFFLFQGEAEDNIPNFVRECGASL 123
L L G +Q NIE + I F + + + + + +F+ + G L
Sbjct: 69 LNIPLIIQVIPYWKDIADYIGELSIQLNIENVYSNIEFGVNELKRDKTVQDFLNQQGKEL 128
Query: 124 LVTDFSPLREIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKL 183
+ R +C+ + S ++V A +K YS + G
Sbjct: 129 FLFH-------DRTIFPLCSIRNQSQQPYQVFG--------AFKKACYSKLDISGLPQCY 173
Query: 184 -LPEYLIDYPMLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLK 242
+PE YP I T I A + G +GE+ A+E L
Sbjct: 174 PIPEKQSSYPASFSKINSLTLED--------IEAFFDPSVSKEQQGLWPAGENFALEQL- 224
Query: 243 GSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKAR----KLCP 298
D F+ L +Y +R+ P R S LSPYL+ G +S ++C +A L
Sbjct: 225 ---DIFIKDHLSDYKLERDFP-NVRGTSQLSPYLNIGILSIRQCLQALFRAEHGNFHLTN 280
Query: 299 EAIDTFLEELIVR 311
E T+L+EL+ R
Sbjct: 281 EGQQTWLDELLWR 293
>gi|359440272|ref|ZP_09230193.1| deoxyribodipyrimidine photo-lyase [Pseudoalteromonas sp. BSi20429]
gi|358037809|dbj|GAA66442.1| deoxyribodipyrimidine photo-lyase [Pseudoalteromonas sp. BSi20429]
Length = 464
Score = 41.6 bits (96), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 58/268 (21%), Positives = 105/268 (39%), Gaps = 24/268 (8%)
Query: 31 VVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQ 90
++W RD R+ N ALI A++ K+ + V+ + Q A Q+ + R + LQ
Sbjct: 3 TLFWFRRDLRLFSNEALIQALNNGAKHAI-FFVSEKQWQQHQTAPI-QIDLLKRRVTYLQ 60
Query: 91 RNIEETFQILFFLFQGEAEDNIPNFVRECGAS----LLVTDFSPLREIRRCKDKI--CNR 144
+ + L + D + C ++ ++ L E+ R K + C+
Sbjct: 61 SQLADYGITLHVIEAPSFSDCTRELIDFCKSNDVKHVIANTEYELNEVNRDKAILHECDE 120
Query: 145 VSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQPIEKWTGT 204
+S + T++E D + PV + K L +Y + L Q W T
Sbjct: 121 LSITFTLYEGDL--IAPVGTVKNQSNEMYKVFTPFKRAWLKQYQDTHFSLPQ----WPLT 174
Query: 205 RQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPL 264
+ +D + +L+ C E L D F+ +L +Y R+ P
Sbjct: 175 SEPTKFDE--SGLLKSDG-------CSDKWPVDDETLSTVVDNFICDKLTSYDDQRDIP- 224
Query: 265 KPRALSGLSPYLHFGQISAQRCALEARK 292
+ SGLSPYL G +S ++ + ++
Sbjct: 225 SVKGTSGLSPYLALGIVSTKQLLINIQQ 252
>gi|120556015|ref|YP_960366.1| deoxyribodipyrimidine photo-lyase [Marinobacter aquaeolei VT8]
gi|120325864|gb|ABM20179.1| deoxyribodipyrimidine photo-lyase family protein (cryptochrome)
[Marinobacter aquaeolei VT8]
Length = 505
Score = 41.6 bits (96), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 64/264 (24%), Positives = 105/264 (39%), Gaps = 42/264 (15%)
Query: 31 VVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQ 90
VV W RD RV D+ L AV Q+ + VP+ V + Q RQ F+ L L+
Sbjct: 3 VVVWFKRDLRVEDHGPLYAAV-QSGQPVVPLYVVEPEYWQQPDTSRRQWQFVAESLESLR 61
Query: 91 RNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICNRVSDSVT 150
+ ++ L + GE + + ++ G + + C++ +
Sbjct: 62 KQLKRLGSDLL-IAHGEVIRTLDDLKQQYGITQV----------------FCHQETGGDW 104
Query: 151 IHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLP--------EYLIDYPMLEQPIEKWT 202
+ D V W S+++E+ G + +L+ +I L P
Sbjct: 105 TFQRD--KAVIAWCQSQQIEFREWQGFGVVRRLVNRDDWDQHWNRIIKSTRLPAP----E 158
Query: 203 GTRQ--SIDW-DSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLKNYPTD 259
G R + W S+ A G P+ G + A+ +L D FL +R Y +
Sbjct: 159 GIRSPDTSGWPQSLPAPAQLNGGPCPDRQ--AGGSERAIALL----DSFLERRCVGYQYN 212
Query: 260 RNNPLK-PRALSGLSPYLHFGQIS 282
++PL PRA S LSP+L +G IS
Sbjct: 213 MSSPLTAPRACSRLSPHLAWGTIS 236
>gi|406596893|ref|YP_006748023.1| deoxyribodipyrimidine photo-lyase [Alteromonas macleodii ATCC
27126]
gi|406374214|gb|AFS37469.1| deoxyribodipyrimidine photo-lyase [Alteromonas macleodii ATCC
27126]
Length = 474
Score = 41.6 bits (96), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 74/313 (23%), Positives = 121/313 (38%), Gaps = 51/313 (16%)
Query: 32 VYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQR 91
+ W +D RV+DN AL A D VP+ + + ++ L L +
Sbjct: 7 IMWFRQDLRVKDNPALNAACDMGKI--VPIYIYDDTAPNGREPGGASKWWLHHSLSSLNK 64
Query: 92 NIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTD--FSPLREIRRCKDKICNRVSDSV 149
+ QI F+G+ + IP ++ A + + + P +I R K + ++
Sbjct: 65 RLNGHLQI----FKGDPQTLIPKLMKSFNAKGIFWNRCYEPW-QINRDK-----TIKKTL 114
Query: 150 TIHEVDAH--NVVPVWVASEKLEYSAKTLR--------GKINKLLPEY------LIDYPM 193
HE +AH N +W + L+ R G + P Y I Y
Sbjct: 115 IEHEYEAHSCNGSLLWEPMKVLKKDGTPYRVFTPYYKKGCLQVEEPRYPKAPPARITYAD 174
Query: 194 LEQPIEKWTGTR--QSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTK 251
++ + T SI+WD+ I E W GED A + L F+
Sbjct: 175 VDNDSDGLTSLDLLPSINWDATI-----------EKEWS-PGEDGAADNLAD----FIEN 218
Query: 252 RLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEAR-KARKLCPEAIDTFLEELIV 310
+ Y R+ P S LSP+LHFG++S + + K ++I+T+L EL
Sbjct: 219 SARKYKDGRDIP-SANGTSRLSPHLHFGEVSPNQVWYAIKDKFGNSEDKSIETYLSEL-G 276
Query: 311 RRELADNFCFYQP 323
RE + F+ P
Sbjct: 277 WREFSYYLLFHFP 289
>gi|336465567|gb|EGO53807.1| deoxyribodipyrimidine photolyase [Neurospora tetrasperma FGSC 2508]
gi|350295132|gb|EGZ76109.1| deoxyribodipyrimidine photolyase [Neurospora tetrasperma FGSC 2509]
Length = 642
Score = 41.6 bits (96), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 52/104 (50%), Gaps = 8/104 (7%)
Query: 28 RGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKAR---QLGFMLR 84
R VV+W D R+ DN +L A +A + VP+ + L + L A R ++ FMLR
Sbjct: 134 RQAVVHWFKMDLRLHDNRSLWLASQKAKEAGVPLICLYVLSPEDLEAHLRAPIRVDFMLR 193
Query: 85 GLRLLQRNIEETFQILFFLFQGEAEDNIPNFVREC----GASLL 124
L +L ++E+ I ++ E +PN ++E GAS L
Sbjct: 194 TLEVLMTDLED-LGIPLWVETVEKRKEVPNRIKELMKSWGASHL 236
>gi|149925197|ref|ZP_01913492.1| deoxyribodipyrimidine photolyase [Plesiocystis pacifica SIR-1]
gi|149813925|gb|EDM73576.1| deoxyribodipyrimidine photolyase [Plesiocystis pacifica SIR-1]
Length = 231
Score = 41.6 bits (96), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 47/198 (23%), Positives = 84/198 (42%), Gaps = 11/198 (5%)
Query: 15 RIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGA 74
R+R + +L+ V++WM +R R N+AL HA+ A + P+ V L + A
Sbjct: 12 RVRAVNPAALNPDGTHVLHWMIAHRRTRHNFALQHALFHAERLQKPLVVLEPLRVGYRWA 71
Query: 75 KARQLGFMLRGLRLLQRNIEETFQILFFLFQ---GEAEDNIPNFVRECGASLLVTDFSPL 131
R F+L G+ + R + + G + ++ A L+ TD P
Sbjct: 72 SDRMHRFVLEGMAVNARRFAKAGVTYLPYVEDRPGAGSGLLAALAQD--ACLVTTDDYPC 129
Query: 132 REIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLI-- 189
+ R ++ V + VDA+ V+P+ A++ +A + R + E L
Sbjct: 130 FFLPRMIASAGRQL--PVRLEAVDANGVIPL-QATDHAFPTAHSFRRWFQRNAAEQLSPG 186
Query: 190 DYPMLEQPIEKWTGTRQS 207
P++ P+ +WT R S
Sbjct: 187 GRPLV-NPLARWTARRPS 203
>gi|359454744|ref|ZP_09244013.1| deoxyribodipyrimidine photo-lyase [Pseudoalteromonas sp. BSi20495]
gi|358048121|dbj|GAA80262.1| deoxyribodipyrimidine photo-lyase [Pseudoalteromonas sp. BSi20495]
Length = 464
Score = 41.2 bits (95), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 56/268 (20%), Positives = 107/268 (39%), Gaps = 24/268 (8%)
Query: 31 VVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQ 90
++W RD R+ N ALI A++ K+ + V+ + Q A Q+ + R + LQ
Sbjct: 3 TLFWFRRDLRLFSNEALIQALNNGAKHAI-FFVSEKQWQQHQTAPI-QIDLLKRRVTYLQ 60
Query: 91 RNIEETFQILFFLFQGEAEDNIPNFVRECGAS----LLVTDFSPLREIRRCKDKI--CNR 144
+ + L + D + C A+ ++ L E+ R K + C+
Sbjct: 61 SQLADYGITLHIIEAPSFCDCTRELINFCKANDVKHVIANTEYELNEVNRDKAILHECDE 120
Query: 145 VSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQPIEKWTGT 204
+S + T++E D + P + ++ + + +L Y + +W T
Sbjct: 121 LSITFTLYEGDL--IAP----AGSVKNQSNEMYKVFTPFKRAWLKQYQDTHFSLTQWPLT 174
Query: 205 RQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPL 264
I++D + +L+ C E L D F+ +L +Y R+ P
Sbjct: 175 SDPIEFDE--SDLLKNDG-------CSDKWPVDDETLSTVVDNFICDKLTSYDDQRDIP- 224
Query: 265 KPRALSGLSPYLHFGQISAQRCALEARK 292
+ SGLSPYL G +S ++ + ++
Sbjct: 225 SVKGTSGLSPYLALGIVSTKQLLINIQQ 252
>gi|300023724|ref|YP_003756335.1| DNA photolyase FAD-binding protein [Hyphomicrobium denitrificans
ATCC 51888]
gi|299525545|gb|ADJ24014.1| DNA photolyase FAD-binding protein [Hyphomicrobium denitrificans
ATCC 51888]
Length = 482
Score = 41.2 bits (95), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 81/323 (25%), Positives = 121/323 (37%), Gaps = 61/323 (18%)
Query: 30 PVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLG-----FMLR 84
P+V W D R+ D+ AL+ AV P+ + L D K ++G ++ +
Sbjct: 5 PIVLWFRNDLRLGDHAALVAAV----HTGAPILPLYILDDA--SPKQWKMGGASHWWLDK 58
Query: 85 GLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGAS--LLVTDFSPLREI--RRCKDK 140
L L ++ L L +G++E + + E GA+ + P +R K K
Sbjct: 59 SLAALAGDLASRGGPLV-LRRGDSETELLRMIEETGAAAVYFTRSYEPWAVALEQRLKTK 117
Query: 141 I------CNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKT--LRGKINKLLPEYLIDYP 192
+ C R + D S Y T R + L+P + P
Sbjct: 118 LDDANVACRRFGGRLLREPEDMRT-------SNGGFYKVYTPFSRAIMKDLVPAKSVRAP 170
Query: 193 -----MLEQP----IEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKG 243
+ +QP + W Q DW AA + GE A + L
Sbjct: 171 ERIATLEKQPKSERLRDWALHPQKPDWSKGFAAA------------WQPGEAGARKRL-- 216
Query: 244 SKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKA---RKLCPEA 300
F+ LK+Y DRN P P S LSP+L FG+IS C A A A
Sbjct: 217 --SDFVRTALKSYARDRNCPATP-GTSRLSPHLAFGEISPAACWHAAAHAGGKTNGSDNA 273
Query: 301 IDTFLEELIVRRELADNFCFYQP 323
+TFL+EL+ RE + F+ P
Sbjct: 274 AETFLKELLW-REFSAGLLFHFP 295
>gi|410447903|ref|ZP_11301995.1| putative deoxyribodipyrimidine photo-lyase [SAR86 cluster bacterium
SAR86E]
gi|409979483|gb|EKO36245.1| putative deoxyribodipyrimidine photo-lyase [SAR86 cluster bacterium
SAR86E]
Length = 475
Score = 41.2 bits (95), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 59/273 (21%), Positives = 115/273 (42%), Gaps = 30/273 (10%)
Query: 32 VYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQR 91
+ W D R+ DN AL+ A+D+ ++ + N ++ + + L F+++ L +L++
Sbjct: 6 LIWFRTDLRLDDNPALLDAIDKCDEVAGIYIFSENQWNDHNESNVK-LSFLIKNLEILEK 64
Query: 92 NIEETFQILFFLFQGEAEDNIP----NF-VRECGASLLVTDFSPLREIRRCKDKICNRVS 146
++ I + ++P NF V + + + E +R D + ++
Sbjct: 65 SLS-NLNIPLITLNTNSFKSLPKDLNNFSVTNNINQVFWNNEFGINESKR--DDLSAQIL 121
Query: 147 DSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLP-------EYLIDYPMLEQPIE 199
++ IH V +++ Y LR K ++ ++ M I
Sbjct: 122 NNSNIH---------VSRFDDQVIYEPGILRTGQGKPFSVFTPFKRRWIENFDMNFLEIR 172
Query: 200 KWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLKNYPTD 259
K + ++SI ++ + + +I +GEDAA L FL + ++Y
Sbjct: 173 KPSALKKSISLNNESSKIQYSKIHKVDIDLWPAGEDAAAARLSN----FLELKSRDYNQS 228
Query: 260 RNNPLKPRALSGLSPYLHFGQISAQRCALEARK 292
RN+P+ S +SPYL G +S +RC LE K
Sbjct: 229 RNSPILD-GTSRISPYLALGILSPRRCILEGMK 260
>gi|374851431|dbj|BAL54391.1| deoxyribodipyrimidine photo-lyase [uncultured gamma
proteobacterium]
Length = 491
Score = 41.2 bits (95), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 52/107 (48%), Gaps = 17/107 (15%)
Query: 224 VPEIGWCES-------GEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYL 276
+P IGW GE A+ L+ + G L + Y + R+ P P A S LSP+L
Sbjct: 192 MPRIGWYRGLAQTWRPGEAGALARLEAFRSGPLAE----YASLRDRPDLP-ATSRLSPHL 246
Query: 277 HFGQISAQRCALEARKARKLCPEAIDTFLEELIVRRELADNFCFYQP 323
HFG+IS ++ A + + + FL ELI RE + + ++ P
Sbjct: 247 HFGEISPKQVAASILASG----HSGEAFLRELIW-REFSHHLLYHFP 288
>gi|289670152|ref|ZP_06491227.1| photolyase [Xanthomonas campestris pv. musacearum NCPPB 4381]
Length = 484
Score = 41.2 bits (95), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 50/97 (51%), Gaps = 15/97 (15%)
Query: 224 VPEIGW-------CESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYL 276
VP + W + GE A E+L+ DG L+ Y +R+ P + S LSP+L
Sbjct: 201 VPSLNWDQGFWEHGQPGEAGAHEMLEIFIDGALS----GYRENRDRPDR-VGTSQLSPHL 255
Query: 277 HFGQISAQRCA--LEARKARKLCPEAIDTFLEELIVR 311
HFG+I+ R A LEAR+ + E ID ++ +L R
Sbjct: 256 HFGEIAPWRIASTLEARRTARNGAE-IDGYIRQLGWR 291
>gi|456354652|dbj|BAM89097.1| deoxyribodipyrimidine photo-lyase type I [Agromonas oligotrophica
S58]
Length = 437
Score = 41.2 bits (95), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 50/97 (51%), Gaps = 9/97 (9%)
Query: 231 ESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEA 290
++GE AA E L FL +++Y DR+ P A S +SP+L FG+IS ++ A
Sbjct: 161 QAGERAAQERL----GKFLETAVRSYAADRDRP-DIDATSRMSPHLRFGEISPRQIWHAA 215
Query: 291 RKARKLCP---EAIDTFLEELIVRRELADNFCFYQPN 324
R A + P I+ FL EL RE + + + P+
Sbjct: 216 RFAAEEHPAFARGIEKFLSELGW-REFSRHLLYNNPD 251
>gi|424813932|ref|ZP_18239110.1| deoxyribodipyrimidine photolyase [Candidatus Nanosalina sp.
J07AB43]
gi|339757548|gb|EGQ42805.1| deoxyribodipyrimidine photolyase [Candidatus Nanosalina sp.
J07AB43]
Length = 471
Score = 41.2 bits (95), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 66/287 (22%), Positives = 122/287 (42%), Gaps = 37/287 (12%)
Query: 37 RDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQRNIEET 96
R R DN AL+ A ++ ++ VP+ V + + + ++ F L+ L++++ ET
Sbjct: 9 RSLREHDNTALVKASEEHDEV-VPLYVVDDSYFEQAELGYPRVKFWHDSLKELEQDLSET 67
Query: 97 FQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICNRVSDSVTIHEVDA 156
+ G+ + I V E A + + R+ R K +V D + + V +
Sbjct: 68 DGKQLVVRNGDPAEEIQRVVEETEADAVYHN----RDYRPYSKKRDQKVEDEIEV-PVKS 122
Query: 157 HNVVPVWVASEKLEYSAKTLRG---------KINKLLPEYLIDYPMLEQPIEKWTGTRQS 207
+ ++ E L S + K +K P+ + DY T +S
Sbjct: 123 FKDIVMFEKEEILTNSGTPYKVYSYYKKKWFKNDKRRPQKVKDYS---------TPELES 173
Query: 208 IDWDSIIAAVLRKGAEVPE-IGWCESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKP 266
++ I +V G E PE + E G + ++ +K K + +K+Y R+ +
Sbjct: 174 VE----IPSVSELGFEKPEDMSVWEGGRENGLQRMKQFK-----QNIKDYDQARDYAWRD 224
Query: 267 RALSGLSPYLHFGQISAQRCALEARKARK--LCPEAIDTFLEELIVR 311
+ S LSP+L FG +S + EA + ++ E I+T+ EEL R
Sbjct: 225 -STSKLSPHLKFGTVSIREVFWEAERMKEDDSDSEGIETWQEELAWR 270
>gi|398384297|ref|ZP_10542330.1| deoxyribodipyrimidine photolyase [Sphingobium sp. AP49]
gi|397722893|gb|EJK83422.1| deoxyribodipyrimidine photolyase [Sphingobium sp. AP49]
Length = 458
Score = 41.2 bits (95), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 40/130 (30%), Positives = 55/130 (42%), Gaps = 23/130 (17%)
Query: 198 IEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLKNYP 257
++ W +S DW S A G E G +A + L YP
Sbjct: 178 LDDWPLLPRSPDWASAFHADWTPG---------EKGAEAHLSAF--------MDELDEYP 220
Query: 258 TDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVRRELADN 317
RN P + S LSP+LHFG+IS + +A A+ +A+ FL ELI R+ A N
Sbjct: 221 DARNLPSR-EGTSRLSPHLHFGEISPAQVWHQAANAQG---DAM-IFLRELIW-RDYAHN 274
Query: 318 FCFYQPNYDS 327
+ P Y S
Sbjct: 275 QIWTMPTYGS 284
>gi|456970171|gb|EMG11026.1| hypothetical protein LEP1GSC151_2606 [Leptospira interrogans
serovar Grippotyphosa str. LT2186]
Length = 217
Score = 41.2 bits (95), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 38/176 (21%), Positives = 84/176 (47%), Gaps = 10/176 (5%)
Query: 15 RIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGA 74
R+R +KQ + +++ ++YWM +R+ N +L +++ + K + + L + +
Sbjct: 9 RVREIKQNPILEEKPYILYWMSMARRLVWNHSLDYSIHLSQKYKKELLIYEPLKMNYPWS 68
Query: 75 KARQLGFMLRGLRLLQRNIEET--FQILFFLFQGEAEDNIPNFVRECG--ASLLVTDFSP 130
R F+L G + NI+E + + F + I + A+L++TD P
Sbjct: 69 SPRLHKFILEG---MSYNIKEAKRLGLTYRAFVETPGNRIEEAFEKISSEAALVITDDYP 125
Query: 131 LREIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPE 186
I +++ ++ VD+++++P+ E + +A+ LR +++KL PE
Sbjct: 126 AYIIPELLEQVSKKI--KCKFLAVDSNSIIPLTFYGEFVS-AARILRPRVHKLFPE 178
>gi|455789407|gb|EMF41336.1| hypothetical protein LEP1GSC067_0821 [Leptospira interrogans
serovar Lora str. TE 1992]
Length = 217
Score = 40.8 bits (94), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 38/176 (21%), Positives = 84/176 (47%), Gaps = 10/176 (5%)
Query: 15 RIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGA 74
R+R +KQ + +++ ++YWM +R+ N +L +++ + K + + L + +
Sbjct: 9 RVREIKQNPILEEKPYILYWMSMARRLVWNHSLDYSIHLSQKYKKELLIYEPLKMNYPWS 68
Query: 75 KARQLGFMLRGLRLLQRNIEET--FQILFFLFQGEAEDNIPNFVRECG--ASLLVTDFSP 130
R F+L G + NI+E + + F + I + A+L++TD P
Sbjct: 69 SPRLHKFILEG---MSYNIKEAKRLGLTYRAFVETPGNRIEEAFEKISSEAALVITDDYP 125
Query: 131 LREIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPE 186
I +++ ++ VD+++++P+ E + +A+ LR +++KL PE
Sbjct: 126 AYIIPELLEQVSKKI--KCKFLAVDSNSIIPLTFYGEFVS-AARILRPRVHKLFPE 178
>gi|343515133|ref|ZP_08752192.1| deoxyribodipyrimidine photolyase [Vibrio sp. N418]
gi|342798665|gb|EGU34263.1| deoxyribodipyrimidine photolyase [Vibrio sp. N418]
Length = 483
Score = 40.8 bits (94), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 57/125 (45%), Gaps = 15/125 (12%)
Query: 248 FLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRC---ALEARKARK----LCPEA 300
F +R+ NY DR+ P A S LSPYL G +S ++C L + +A + L E
Sbjct: 223 FCHERVDNYHNDRDKP-ALNATSMLSPYLAIGALSVRQCVARVLYSAQAHQITSPLLGEG 281
Query: 301 IDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQ 360
I T++ EL V R+ + ++P + W K H ++H+ ++K
Sbjct: 282 IHTWISEL-VWRDFYQHLLHFEPKLCKGRHFVTWTEKM---HWPGSKQHLAA---WQKGM 334
Query: 361 TADPV 365
T P+
Sbjct: 335 TGYPI 339
>gi|71403553|ref|XP_804566.1| DNA photolyase [Trypanosoma cruzi strain CL Brener]
gi|70867603|gb|EAN82715.1| DNA photolyase, putative [Trypanosoma cruzi]
Length = 398
Score = 40.8 bits (94), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 47/113 (41%), Gaps = 13/113 (11%)
Query: 31 VVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLG---------- 80
+V + D RV DN+ L A +A +A + D A+ +G
Sbjct: 221 MVVFAANDMRVHDNYTLALAAVRAEAAGGLPVIAVAVIDYRTFAQPSAVGGYFRQSPMRA 280
Query: 81 -FMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGAS--LLVTDFSP 130
F L L L+ IEE + + G E+++P ECGA+ + T ++P
Sbjct: 281 RFFLESLAKLRATIEEELHVPLLIRCGRPEEHVPRLAVECGATDVFMTTQYAP 333
>gi|258622171|ref|ZP_05717197.1| deoxyribodipyrimidine photolyase, cyclobutane pyrimidine
dimer-specific [Vibrio mimicus VM573]
gi|424808742|ref|ZP_18234131.1| deoxyribodipyrimidine photolyase, cyclobutane pyrimidine
dimer-specific [Vibrio mimicus SX-4]
gi|258585495|gb|EEW10218.1| deoxyribodipyrimidine photolyase, cyclobutane pyrimidine
dimer-specific [Vibrio mimicus VM573]
gi|342323694|gb|EGU19477.1| deoxyribodipyrimidine photolyase, cyclobutane pyrimidine
dimer-specific [Vibrio mimicus SX-4]
Length = 469
Score = 40.8 bits (94), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 46/102 (45%), Gaps = 4/102 (3%)
Query: 238 MEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCA--LEARKARK 295
EV++ F +R+++Y R+ P + S LSPYL G +SA++C L A
Sbjct: 206 FEVIRTQLRDFCRERVQDYHQWRDFPAR-EGTSVLSPYLAIGALSARQCVARLYRESAMS 264
Query: 296 LCPEAIDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARK 337
E +L ELI RE + +PN + EW +
Sbjct: 265 ALSEGAQVWLSELIW-REFYQHLVAIEPNISKSRDFLEWGAR 305
>gi|338999060|ref|ZP_08637715.1| deoxyribodipyrimidine photolyase [Halomonas sp. TD01]
gi|338764081|gb|EGP19058.1| deoxyribodipyrimidine photolyase [Halomonas sp. TD01]
Length = 470
Score = 40.8 bits (94), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 37/102 (36%), Positives = 52/102 (50%), Gaps = 15/102 (14%)
Query: 232 SGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRC--ALE 289
+GEDAA + L + FL R ++Y R+ P K R S LSPYL G IS ++C A+
Sbjct: 204 AGEDAASDNL----ERFLRFRGRHYKQQRDFP-KVRGTSELSPYLALGMISYRQCLQAVM 258
Query: 290 ARKARKLC--PEAIDTFLEELIVR---RELADNF---CFYQP 323
+ L + T++ ELI R + +A F C YQP
Sbjct: 259 SENGGHLADGDAGLTTWVNELIWREFYQHVAVGFPKVCRYQP 300
>gi|212543459|ref|XP_002151884.1| deoxyribodipyrimidine photo-lyase Phr1, putative [Talaromyces
marneffei ATCC 18224]
gi|210066791|gb|EEA20884.1| deoxyribodipyrimidine photo-lyase Phr1, putative [Talaromyces
marneffei ATCC 18224]
Length = 452
Score = 40.8 bits (94), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 54/116 (46%), Gaps = 19/116 (16%)
Query: 26 KKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRG 85
K R V++W D R++DN AL A + A KNN+ A ++ F LR
Sbjct: 322 KPRNAVLHWFKGDLRLKDNRALTMASELAAKNNIVRCPA-------------RVDFTLRN 368
Query: 86 LRLLQRNIEETFQILFFLFQGEAEDNIPNFVREC----GASLLVTDFS-PLREIRR 136
L++LQ+ + + I ++ E N+P + E GAS L + + E+RR
Sbjct: 369 LKVLQQKL-DNLDIPLYMETQEQRRNVPGRIAELCERWGASHLFANIEYEVDELRR 423
>gi|258541536|ref|YP_003186969.1| deoxyribodipyrimidine photolyase [Acetobacter pasteurianus IFO
3283-01]
gi|384041457|ref|YP_005480201.1| deoxyribodipyrimidine photolyase [Acetobacter pasteurianus IFO
3283-12]
gi|384049972|ref|YP_005477035.1| deoxyribodipyrimidine photolyase [Acetobacter pasteurianus IFO
3283-03]
gi|384053082|ref|YP_005486176.1| deoxyribodipyrimidine photolyase [Acetobacter pasteurianus IFO
3283-07]
gi|384056314|ref|YP_005488981.1| deoxyribodipyrimidine photolyase [Acetobacter pasteurianus IFO
3283-22]
gi|384058955|ref|YP_005498083.1| deoxyribodipyrimidine photolyase [Acetobacter pasteurianus IFO
3283-26]
gi|384062249|ref|YP_005482891.1| deoxyribodipyrimidine photolyase [Acetobacter pasteurianus IFO
3283-32]
gi|384118325|ref|YP_005500949.1| deoxyribodipyrimidine photolyase [Acetobacter pasteurianus IFO
3283-01-42C]
gi|256632614|dbj|BAH98589.1| deoxyribodipyrimidine photolyase [Acetobacter pasteurianus IFO
3283-01]
gi|256635671|dbj|BAI01640.1| deoxyribodipyrimidine photolyase [Acetobacter pasteurianus IFO
3283-03]
gi|256638726|dbj|BAI04688.1| deoxyribodipyrimidine photolyase [Acetobacter pasteurianus IFO
3283-07]
gi|256641780|dbj|BAI07735.1| deoxyribodipyrimidine photolyase [Acetobacter pasteurianus IFO
3283-22]
gi|256644835|dbj|BAI10783.1| deoxyribodipyrimidine photolyase [Acetobacter pasteurianus IFO
3283-26]
gi|256647890|dbj|BAI13831.1| deoxyribodipyrimidine photolyase [Acetobacter pasteurianus IFO
3283-32]
gi|256650943|dbj|BAI16877.1| deoxyribodipyrimidine photolyase [Acetobacter pasteurianus IFO
3283-01-42C]
gi|256653934|dbj|BAI19861.1| deoxyribodipyrimidine photolyase [Acetobacter pasteurianus IFO
3283-12]
Length = 309
Score = 40.8 bits (94), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 35/104 (33%), Positives = 46/104 (44%), Gaps = 10/104 (9%)
Query: 213 IIAAVLRKGAEVPEI--GWCESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALS 270
+ A + R G + P + GW SGE AA L F+ L +Y T R+ P S
Sbjct: 25 LCARLHRVGTQPPALPSGWT-SGEKAAHANLHR----FIENALADYETQRDRADAPHGTS 79
Query: 271 GLSPYLHFGQISAQRCALEARKARKLCPE---AIDTFLEELIVR 311
LSPY+ GQIS ++ R A P + FL EL R
Sbjct: 80 LLSPYIRVGQISVRQIWHAIRHAEHQNPHLATPAEKFLAELGWR 123
>gi|403416444|emb|CCM03144.1| predicted protein [Fibroporia radiculosa]
Length = 591
Score = 40.8 bits (94), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 85/324 (26%), Positives = 127/324 (39%), Gaps = 61/324 (18%)
Query: 16 IRVLKQGSLDKKRG-PVVYWM-FRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLG 73
+ LK + +G VVYWM D R+ DN AL A A K+NVP+ V F L Q
Sbjct: 55 LNALKDNARSSPKGASVVYWMRMEDLRISDNRALAQASALAQKDNVPLVVLFVLSPQDYI 114
Query: 74 A---KARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFV----RECGASLLVT 126
A AR++ F LR L ++ ++ E + +IP+ V +E GA+ L
Sbjct: 115 AHDRSARRIDFTLRNLHEIKSSLAE-HHVPLCTTSHTPRISIPSHVLSLLKEWGATQLFA 173
Query: 127 DFSP-----LREIRRC----KDKI-CNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKT- 175
+ R+I+ C K+ I C+ V D + D + E YS +
Sbjct: 174 NIEHEVDELRRDIKLCELAKKEGIDCSFVHDKCIVPPGDI-------LTKEGKAYSVYSP 226
Query: 176 -LRGKINKLLPE----YLIDYPMLEQPI-----EKWTGTRQSIDWDSIIAAVLRKGAEVP 225
LR I L + +L P L G + + + E
Sbjct: 227 FLRSWIKHLSLKKEDIHLTHAPTLADNAFSIRDHSTFGRLFEVPVPEEVEGFTLQPDEKE 286
Query: 226 EIGWC-ESGEDAAMEVL--------KGSKDGFLTKRLKNYPTDRNNPLKPR--------- 267
+ +C +GEDAA ++L +GS+ G + +N RN+ R
Sbjct: 287 RMRFCWPAGEDAARQILDRFVHTMARGSQLGAVNPLPENAKAPRNSAKDSRLGKYKAARD 346
Query: 268 -----ALSGLSPYLHFGQISAQRC 286
S LSPYL G ISA++C
Sbjct: 347 KVDADTTSRLSPYLAAGVISARQC 370
>gi|302541523|ref|ZP_07293865.1| deoxyribodipyrimidine photolyase [Streptomyces hygroscopicus ATCC
53653]
gi|302459141|gb|EFL22234.1| deoxyribodipyrimidine photolyase [Streptomyces himastatinicus ATCC
53653]
Length = 445
Score = 40.8 bits (94), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 40/91 (43%), Gaps = 8/91 (8%)
Query: 221 GAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQ 280
G+ P G E GE A L D +L L Y DR + L A S LSPYLHFG
Sbjct: 192 GSGSPSPGLPEGGERAGRRRL----DAWLRSGLGAY-ADRQDDLAGDATSRLSPYLHFGC 246
Query: 281 ISAQRCALEARKARKLCPEAIDTFLEELIVR 311
+S +ARK D F+ +L R
Sbjct: 247 LSPVEL---VHRARKSGGPGADAFVRQLAWR 274
>gi|449145685|ref|ZP_21776486.1| deoxyribodipyrimidine photolyase [Vibrio mimicus CAIM 602]
gi|449078633|gb|EMB49566.1| deoxyribodipyrimidine photolyase [Vibrio mimicus CAIM 602]
Length = 469
Score = 40.8 bits (94), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 46/102 (45%), Gaps = 4/102 (3%)
Query: 238 MEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCA--LEARKARK 295
EV++ F +R+++Y R+ P + S LSPYL G +SA++C L A
Sbjct: 206 FEVIRTQLRDFCRERVQDYHQWRDFPAR-EGTSVLSPYLAIGALSARQCVARLYRESAMS 264
Query: 296 LCPEAIDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARK 337
E +L ELI RE + +PN + EW +
Sbjct: 265 ALSEGAQVWLSELIW-REFYQHLVAIEPNISKSRDFLEWGAR 305
>gi|262164645|ref|ZP_06032383.1| deoxyribodipyrimidine photolyase [Vibrio mimicus VM223]
gi|262027025|gb|EEY45692.1| deoxyribodipyrimidine photolyase [Vibrio mimicus VM223]
Length = 469
Score = 40.8 bits (94), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 46/102 (45%), Gaps = 4/102 (3%)
Query: 238 MEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCA--LEARKARK 295
EV++ F +R+++Y R+ P + S LSPYL G +SA++C L A
Sbjct: 206 FEVIRTQLRDFCRERVQDYHQWRDFPAR-EGTSVLSPYLAIGALSARQCVARLYRESAMS 264
Query: 296 LCPEAIDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARK 337
E +L ELI RE + +PN + EW +
Sbjct: 265 ALSEGAQVWLSELIW-REFYQHLVAIEPNISKSRDFLEWGAR 305
>gi|258624237|ref|ZP_05719186.1| deoxyribodipyrimidine photolyase, cyclobutane pyrimidine
dimer-specific [Vibrio mimicus VM603]
gi|258583388|gb|EEW08188.1| deoxyribodipyrimidine photolyase, cyclobutane pyrimidine
dimer-specific [Vibrio mimicus VM603]
Length = 469
Score = 40.8 bits (94), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 46/102 (45%), Gaps = 4/102 (3%)
Query: 238 MEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCA--LEARKARK 295
EV++ F +R+++Y R+ P + S LSPYL G +SA++C L A
Sbjct: 206 FEVIRTQLRDFCRERVQDYHQWRDFPAR-EGTSVLSPYLAIGALSARQCVARLYRESAMS 264
Query: 296 LCPEAIDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARK 337
E +L ELI RE + +PN + EW +
Sbjct: 265 ALSEGAQVWLSELIW-REFYQHLVAIEPNISKSRDFLEWGAR 305
>gi|449303844|gb|EMC99851.1| hypothetical protein BAUCODRAFT_62992 [Baudoinia compniacensis UAMH
10762]
Length = 599
Score = 40.8 bits (94), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 46/92 (50%), Gaps = 3/92 (3%)
Query: 31 VVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGA---KARQLGFMLRGLR 87
VV+W RD R DN AL A +A VP+ F + Q A A ++ F LR L
Sbjct: 98 VVHWFKRDLRTFDNRALSMASAKAKSKGVPLICMFIVSPQDYQAHLTSAPRVDFELRTLE 157
Query: 88 LLQRNIEETFQILFFLFQGEAEDNIPNFVREC 119
+++ ++ E L+ E ++ IP+ +++C
Sbjct: 158 VMKEDLAEKDIPLYVTTIEERKNVIPHIMQKC 189
>gi|440229885|ref|YP_007343678.1| deoxyribodipyrimidine photolyase [Serratia marcescens FGI94]
gi|440051590|gb|AGB81493.1| deoxyribodipyrimidine photolyase [Serratia marcescens FGI94]
Length = 476
Score = 40.8 bits (94), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 70/306 (22%), Positives = 122/306 (39%), Gaps = 54/306 (17%)
Query: 32 VYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGL----- 86
+ W+ D R+ DN AL A V + +A + RQ F+ L
Sbjct: 5 LVWLRNDLRITDNKALYAACRDPQAQVVALFIATPQQWRRHEMAPRQAAFIYANLLQLRS 64
Query: 87 RLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICNRVS 146
+L QR I Q A + ++ R G L + RR ++ + ++
Sbjct: 65 QLAQRGIPLVVQQCDDF--AAAARWLTDYCRATGVDALFYNRQYELNERRRDRQVESALA 122
Query: 147 DSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQPIEKWTGTRQ 206
+++T H D ++P S +T G++ Y + P + +++
Sbjct: 123 ETLTCHAFDDALLLP--------PGSVQTGSGEM------YQVFTPFRKAFLQRLL---- 164
Query: 207 SIDWDSIIAAVLRKGAEV-----------PEIGWCES---GEDAAMEVLKGSKDGFLTKR 252
S+D S+ A +R G + P+ W + GE+ A+ L+ F ++
Sbjct: 165 SVDVHSLPAPSVRAGGAIAEPAAPEPFAYPDAEWDAAFPPGEEHALRRLRA----FCREQ 220
Query: 253 LKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAID-------TFL 305
+++Y R+ P A SGLSPYL G +S ++C + R CP+ + T+L
Sbjct: 221 VEDYRQQRDFPAL-DATSGLSPYLALGVLSPRQC---FNRLRLTCPDLLTQPESGAFTWL 276
Query: 306 EELIVR 311
ELI R
Sbjct: 277 NELIWR 282
>gi|270159915|ref|ZP_06188571.1| deoxyribodipyrimidine photo-lyase [Legionella longbeachae D-4968]
gi|289165333|ref|YP_003455471.1| deoxyribodipyrimidine photolyase phrB [Legionella longbeachae
NSW150]
gi|269988254|gb|EEZ94509.1| deoxyribodipyrimidine photo-lyase [Legionella longbeachae D-4968]
gi|288858506|emb|CBJ12387.1| putative deoxyribodipyrimidine photolyase phrB [Legionella
longbeachae NSW150]
Length = 472
Score = 40.4 bits (93), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 46/99 (46%), Gaps = 17/99 (17%)
Query: 224 VPEIGWCE-------SGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYL 276
+P I W GE A + LK F+ L Y +R+ P+K A S LSP+L
Sbjct: 184 LPTINWAARFSEYWIPGEGGAQQKLKE----FIEHHLNGYKNNRDFPIK-NATSRLSPHL 238
Query: 277 HFGQISAQRCALEARKARKLCPE----AIDTFLEELIVR 311
HFG+IS L A + KL P + + FL EL R
Sbjct: 239 HFGEISPW-TILRAIELAKLNPNCDLASAEHFLSELGWR 276
>gi|316933592|ref|YP_004108574.1| DNA photolyase FAD-binding protein [Rhodopseudomonas palustris
DX-1]
gi|315601306|gb|ADU43841.1| DNA photolyase FAD-binding protein [Rhodopseudomonas palustris
DX-1]
Length = 483
Score = 40.4 bits (93), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 79/326 (24%), Positives = 120/326 (36%), Gaps = 50/326 (15%)
Query: 30 PVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQF--LGAKARQLGFMLRGLR 87
PV+ W D R+ D+ AL HA Q+ + V V + D+ LG AR ++ + LR
Sbjct: 9 PVIVWFRDDLRLADHPAL-HAAAQSGAPVLCVYVLDEVSDEVRALGGAARW--WLAQSLR 65
Query: 88 LLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLV---TDFSPLREIRRCKDKICNR 144
L+ + +L L +G A + ++ A+ + + +P R +
Sbjct: 66 SLEAELRAAGALLI-LRRGPAAAVLAELAQQSDAAAVHWNEIEIAPHRAVADALADALTM 124
Query: 145 VSDSVTIHEVDAHNVVPVWVASEK-------LEYSAKTLR-GKINKLLPEYLIDYPMLEQ 196
+ H D V P + S+ + + L G + LP P
Sbjct: 125 AGIAYHRHSGDT-LVAPSAIRSKDGRGMRVFTPFWRRVLSLGDPPQPLPRPAALRPAPAL 183
Query: 197 P---IEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRL 253
P + W + DW + A R G E ++ RL
Sbjct: 184 PGAQLSDWQLEPTAPDWAGGLRATWRPG-----------------EAAAKTRLADFLARL 226
Query: 254 KNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKA---RKLCPEAIDTFLEEL-- 308
Y R+ P + SGLSPYL FG+IS ++ AR A R ID FL EL
Sbjct: 227 PGYAEGRDYPDR-HVTSGLSPYLRFGEISPRQVWYAARFAAAERPAIAPDIDKFLSELGW 285
Query: 309 --IVRRELADNFCF----YQPNYDSL 328
R LAD+ QP +D+
Sbjct: 286 REFCRHLLADHPDLAARNLQPAFDAF 311
>gi|393725140|ref|ZP_10345067.1| deoxyribodipyrimidine photo-lyase [Sphingomonas sp. PAMC 26605]
Length = 457
Score = 40.4 bits (93), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 45/98 (45%), Gaps = 11/98 (11%)
Query: 233 GEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARK 292
GEDAA + L +D + Y RN P S LSP+LHFG++SA +
Sbjct: 201 GEDAAHKRLNAFRD-----QAARYDETRNLP-SIDGSSRLSPHLHFGELSAAQVWHAVTD 254
Query: 293 ARKLCPEAIDTFLEELIVRRELADNFCFYQPNYDSLKG 330
A ++D FL E I R+ A N P+Y + G
Sbjct: 255 AGG----SVDVFLSE-IGWRDYAQNVILQYPDYGTRNG 287
>gi|157827751|ref|YP_001496815.1| deoxyribodipyrimidine photo-lyase [Rickettsia bellii OSU 85-389]
gi|157803055|gb|ABV79778.1| Deoxyribodipyrimidine photo-lyase [Rickettsia bellii OSU 85-389]
Length = 475
Score = 40.4 bits (93), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 75/316 (23%), Positives = 134/316 (42%), Gaps = 43/316 (13%)
Query: 32 VYWMFRDQRVRDNWALIHAVDQANKNNVPVAV-AFNLFDQFLGAKARQLGFMLRGLRLLQ 90
+ W+ R+ R+ DN + A+ ++K +P+ + + ++F R+L F+ L L+
Sbjct: 6 IVWLRRNLRLHDNKSFAAALRNSDKI-LPIFIFDTTILERFKNPHDRRLSFLANTLCLIN 64
Query: 91 RNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTD--FSPLREIRRCK---------- 138
+++ L +F G+ D IP + D + P I R K
Sbjct: 65 DELKKLKGKLL-VFYGKPLDIIPKLAATLKIKNIYADEDYEP-NNIERDKKVQELLGSNC 122
Query: 139 --DKICNRV---SDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPM 193
+ C+ + D V + A+ V ++ + + ++ A NKLL Y +
Sbjct: 123 TLNLYCDHLLIKPDRVLTKDNKAYKVYTPYMQAFR-KFIADNGSISHNKLLTNYSYN--- 178
Query: 194 LEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGED-----AAMEVLKGSKDGF 248
++ T Q I+ +I + K + +IG+ ++ A VL D F
Sbjct: 179 ----LDGKLYTPQDIELKTIDLNI-GKSEALKQIGYVYKEDELWQPKNAQNVL----DKF 229
Query: 249 LTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEEL 308
+T+R+ Y DR+ L S +SPYL FG +S + C +A A P +I T++ EL
Sbjct: 230 ITRRINRYKIDRD-FLYLDGTSTISPYLRFGLVSIRECYRKAFNAAS-NPGSI-TWINEL 286
Query: 309 IVRRELADNFCFYQPN 324
I RE ++ PN
Sbjct: 287 IW-REFYATILYHFPN 301
>gi|115525443|ref|YP_782354.1| deoxyribodipyrimidine photolyase [Rhodopseudomonas palustris
BisA53]
gi|115519390|gb|ABJ07374.1| Deoxyribodipyrimidine photo-lyase type I [Rhodopseudomonas
palustris BisA53]
Length = 483
Score = 40.4 bits (93), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 64/284 (22%), Positives = 105/284 (36%), Gaps = 62/284 (21%)
Query: 30 PVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLG-----FMLR 84
P + W D R+ D+ A++ A + PV + L +Q G R LG ++ +
Sbjct: 8 PSLVWFRDDLRLSDH----PALNAAASSGRPVLCLYVLDEQSPGG--RPLGGAARWWLAQ 61
Query: 85 GLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICNR 144
LR LQ+ + E L L +G A + RE A ++ + + R ++
Sbjct: 62 SLRSLQQILSERGATLM-LRRGAAAQVVAGLARETNAEVVYYNDIAMAPARTVAAELAAT 120
Query: 145 VSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLL---------------PEYLI 189
++D H + H L + +T+R K + L P +
Sbjct: 121 LAD----HGIAVHQ------HPGDLLAAPETIRTKEGRGLRVFTPFWKRVLSLGDPAKPL 170
Query: 190 DYPMLEQP--------IEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVL 241
P P ++ W + DW + A + GE AA L
Sbjct: 171 PAPTALGPPPAAASDRLDDWALEPTAPDWAGGLRAA------------WQPGEAAAQRAL 218
Query: 242 KGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQR 285
FLT + Y DR+ P +P S LSP+L FG+I ++
Sbjct: 219 TD----FLTTGIAGYAGDRDRPDRP-GTSLLSPHLRFGEIGPRQ 257
>gi|149184696|ref|ZP_01863014.1| hypothetical protein ED21_28298 [Erythrobacter sp. SD-21]
gi|148832016|gb|EDL50449.1| hypothetical protein ED21_28298 [Erythrobacter sp. SD-21]
Length = 464
Score = 40.4 bits (93), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 71/308 (23%), Positives = 124/308 (40%), Gaps = 36/308 (11%)
Query: 30 PVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQ------FLGAKARQLGFML 83
P + W+ RD RV D AL HA QA PV + L D+ + GA L + L
Sbjct: 4 PQIVWLRRDLRVADQPAL-HAAAQAG----PVIPVYVLDDERAGDHAYGGASKVWLHYSL 58
Query: 84 RGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLL--VTDFSPLREIRRCKDKI 141
L + QI+ L +G+A + E GA + + + P + +D++
Sbjct: 59 ESL--CKSFGNRRSQIV--LRKGDAPQVLAGIADEVGAGCIHAIRHYEPW--WKEAEDEL 112
Query: 142 CNRVSDSVTIHEVDAHNVVP----VWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQP 197
+ + + + D + ++P + + + + + + P ++ P
Sbjct: 113 RDALEEDRKLCLYDGNYLLPPGSVTTGSGDPYKIYTPFSKSMLEVMPPRDVLGEPETISS 172
Query: 198 IEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLKNYP 257
+ W + DW+ + + G + + GEDAA E L+ + + +Y
Sbjct: 173 PDNWPESDALEDWELLPSKPDWAGGIR---DFWDFGEDAAHERLE-----WWADEVADYD 224
Query: 258 TDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVRRELADN 317
RN P S LSP+LH+G+IS + + R + TF +E I+ R+ A N
Sbjct: 225 EGRNLPSN-DITSRLSPHLHWGEISPAQVWHALKDKRS---DGWKTFAKE-IIWRDYAQN 279
Query: 318 FCFYQPNY 325
PNY
Sbjct: 280 VIDQFPNY 287
>gi|171694686|ref|XP_001912267.1| hypothetical protein [Podospora anserina S mat+]
gi|170947585|emb|CAP59746.1| unnamed protein product [Podospora anserina S mat+]
Length = 734
Score = 40.4 bits (93), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 55/117 (47%), Gaps = 11/117 (9%)
Query: 29 GPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNL----FDQFLGAKARQLGFMLR 84
G VV+W D R DN AL A +A VP+ + L F+ L A R + FMLR
Sbjct: 240 GAVVHWFKMDLRTTDNTALFCASQKAQAAGVPLIALYILSPQDFEAHLTAPVR-VDFMLR 298
Query: 85 GLRLLQRNIEETFQILFFLFQGEAEDNIPN----FVRECGASLLVTDFS-PLREIRR 136
L +L++++ I ++ + IP+ + E GAS L + + E+RR
Sbjct: 299 TLEILKKDL-AALDIPLWVETVKKRKEIPSRIVELMGEWGASHLFANMEYEVDELRR 354
>gi|417822869|ref|ZP_12469467.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HE48]
gi|419836871|ref|ZP_14360311.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-46B1]
gi|421343000|ref|ZP_15793404.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-43B1]
gi|421355393|ref|ZP_15805724.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HE-45]
gi|423734313|ref|ZP_17707526.1| DNA photolyase family protein [Vibrio cholerae HC-41B1]
gi|424008597|ref|ZP_17751545.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-44C1]
gi|340048999|gb|EGR09915.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HE48]
gi|395941567|gb|EJH52244.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-43B1]
gi|395950063|gb|EJH60682.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HE-45]
gi|408631158|gb|EKL03717.1| DNA photolyase family protein [Vibrio cholerae HC-41B1]
gi|408857421|gb|EKL97109.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-46B1]
gi|408865383|gb|EKM04786.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-44C1]
Length = 469
Score = 40.4 bits (93), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 47/104 (45%), Gaps = 4/104 (3%)
Query: 236 AAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCA--LEARKA 293
A E ++ F +R+++Y R+ P++ S LSPYL G +SA++C L +
Sbjct: 204 ADFETVRAQLRDFCRERVQDYHQARDFPVR-EGTSSLSPYLAIGVLSARQCVARLYHESS 262
Query: 294 RKLCPEAIDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARK 337
E +L ELI RE + +PN + EW +
Sbjct: 263 MGELSEGAQVWLSELIW-REFYQHLVAIEPNLSKSRDFVEWGAR 305
>gi|90415238|ref|ZP_01223172.1| putative photolyase [gamma proteobacterium HTCC2207]
gi|90332561|gb|EAS47731.1| putative photolyase [marine gamma proteobacterium HTCC2207]
Length = 445
Score = 40.4 bits (93), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 46/103 (44%), Gaps = 11/103 (10%)
Query: 224 VPEIGW---CESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQ 280
+P I W D + + K D F+ +++Y RN P K + +S LSPY HFGQ
Sbjct: 154 LPAIDWDKKLHGDWDISEDGAKDRLDDFVFNGIQDYREGRNFPNK-KNVSRLSPYFHFGQ 212
Query: 281 ISAQRCALEARKARKLCPEA--IDTFLEELIVRRELADNFCFY 321
+S A A L +DTFL EL R F +Y
Sbjct: 213 MSVNTAWYAANDAAALIDNESNLDTFLSELGWRE-----FSYY 250
>gi|71659265|ref|XP_821356.1| DNA photolyase [Trypanosoma cruzi strain CL Brener]
gi|70886733|gb|EAN99505.1| DNA photolyase, putative [Trypanosoma cruzi]
Length = 875
Score = 40.4 bits (93), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 47/113 (41%), Gaps = 13/113 (11%)
Query: 31 VVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLG---------- 80
+V + D RV DN+ L A +A +A + D A+ +G
Sbjct: 226 MVVFAANDMRVHDNYTLALAAVRAEAAGGLPVIAVAVIDYRTFAQPSAVGGYFRQSPMRA 285
Query: 81 -FMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGAS--LLVTDFSP 130
F L L L+ IEE + + G E+++P ECGA+ + T ++P
Sbjct: 286 RFFLESLAKLRATIEEELHVPLLIRCGRPEEHVPRLAVECGATDVFMTTQYAP 338
>gi|343509312|ref|ZP_08746596.1| deoxyribodipyrimidine photolyase [Vibrio scophthalmi LMG 19158]
gi|342805079|gb|EGU40359.1| deoxyribodipyrimidine photolyase [Vibrio scophthalmi LMG 19158]
Length = 483
Score = 40.0 bits (92), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 57/125 (45%), Gaps = 15/125 (12%)
Query: 248 FLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRC---ALEARKARK----LCPEA 300
F +R+ NY DR+ P A S LSPYL G +S ++C L + +A + L E
Sbjct: 223 FCHERVDNYHNDRDKPAL-NATSMLSPYLAIGALSVRQCVARVLYSAQAHQITSPLLGEG 281
Query: 301 IDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQ 360
I T++ EL V R+ + ++P + W K H ++H+ ++K
Sbjct: 282 IHTWISEL-VWRDFYQHLLHFEPKLCKGRHFVTWTEKL---HWPGSKQHLAA---WQKGM 334
Query: 361 TADPV 365
T P+
Sbjct: 335 TGYPI 339
>gi|197336881|ref|YP_002158424.1| deoxyribodipyrimidine photo-lyase [Vibrio fischeri MJ11]
gi|197314133|gb|ACH63582.1| deoxyribodipyrimidine photo-lyase [Vibrio fischeri MJ11]
Length = 464
Score = 40.0 bits (92), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 42/78 (53%), Gaps = 3/78 (3%)
Query: 248 FLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEAR-KARKLCPEAIDTFLE 306
F +++ Y +R+ P + + S LSPYL G ISA++CAL +A + D +L+
Sbjct: 207 FCRQKVSQYHNNRDYP-EIQGTSQLSPYLAIGAISAKQCALRLHLEANYELNQGEDIWLD 265
Query: 307 ELIVRRELADNFCFYQPN 324
ELI RE + + PN
Sbjct: 266 ELI-WREFYTHLLHFYPN 282
>gi|59713936|ref|YP_206711.1| deoxyribodipyrimidine photolyase Phr, FAD-binding [Vibrio fischeri
ES114]
gi|59482184|gb|AAW87823.1| deoxyribodipyrimidine photolyase Phr, FAD-binding [Vibrio fischeri
ES114]
Length = 479
Score = 40.0 bits (92), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 42/78 (53%), Gaps = 3/78 (3%)
Query: 248 FLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEAR-KARKLCPEAIDTFLE 306
F +++ Y +R+ P + + S LSPYL G ISA++CAL +A + D +L+
Sbjct: 222 FCRQKVSQYHNNRDYP-EIQGTSQLSPYLAIGAISAKQCALRLHLEANYELNQGEDIWLD 280
Query: 307 ELIVRRELADNFCFYQPN 324
ELI RE + + PN
Sbjct: 281 ELI-WREFYTHLLHFYPN 297
>gi|262403201|ref|ZP_06079761.1| deoxyribodipyrimidine photolyase [Vibrio sp. RC586]
gi|262350700|gb|EEY99833.1| deoxyribodipyrimidine photolyase [Vibrio sp. RC586]
Length = 469
Score = 40.0 bits (92), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 45/100 (45%), Gaps = 4/100 (4%)
Query: 238 MEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCA--LEARKARK 295
E ++ F +R+++Y R+ P + S LSPYL G +SA++C L A
Sbjct: 206 FETIRNQLRDFCRERVQDYHQWRDFPART-GTSSLSPYLAIGALSARQCVARLYRESAMG 264
Query: 296 LCPEAIDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWA 335
+ E +L ELI RE + +PN + EW
Sbjct: 265 VLGEGAQVWLSELIW-REFYQHLVAREPNLSKSRDFHEWG 303
>gi|390601020|gb|EIN10414.1| hypothetical protein PUNSTDRAFT_119399 [Punctularia strigosozonata
HHB-11173 SS5]
Length = 528
Score = 40.0 bits (92), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 43/90 (47%), Gaps = 5/90 (5%)
Query: 31 VVYWM-FRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGA---KARQLGFMLRGL 86
VVYWM +D RV DN AL A QA VP+ F + Q A R++ F+LR L
Sbjct: 14 VVYWMRMQDMRVDDNRALSQASKQAVHEGVPLITLFIISPQDYQAHDRSPRRIDFVLRNL 73
Query: 87 RLLQRNIEETFQILFFLFQGEAEDNIPNFV 116
+++ + E I ++ + +FV
Sbjct: 74 WIIKERLAE-LHIPLYIVTHVPRRTLSDFV 102
>gi|423688023|ref|ZP_17662826.1| deoxyribodipyrimidine photo-lyase [Vibrio fischeri SR5]
gi|371492526|gb|EHN68132.1| deoxyribodipyrimidine photo-lyase [Vibrio fischeri SR5]
Length = 479
Score = 40.0 bits (92), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 42/78 (53%), Gaps = 3/78 (3%)
Query: 248 FLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEAR-KARKLCPEAIDTFLE 306
F +++ Y +R+ P + + S LSPYL G ISA++CAL +A + D +L+
Sbjct: 222 FCRQKVSQYHNNRDYP-EIQGTSQLSPYLAIGAISAKQCALRLHLEANYELNQGEDIWLD 280
Query: 307 ELIVRRELADNFCFYQPN 324
ELI RE + + PN
Sbjct: 281 ELI-WREFYTHLLHFYPN 297
>gi|257454814|ref|ZP_05620065.1| deoxyribodipyrimidine photo-lyase [Enhydrobacter aerosaccus SK60]
gi|257447747|gb|EEV22739.1| deoxyribodipyrimidine photo-lyase [Enhydrobacter aerosaccus SK60]
Length = 515
Score = 40.0 bits (92), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 34/64 (53%), Gaps = 7/64 (10%)
Query: 232 SGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPR---ALSGLSPYLHFGQISAQRCAL 288
+GE AA L D FL K + +Y T R+ P A S LSPYL G +S + C L
Sbjct: 238 AGEAAAQSRL----DDFLKKHIADYNTARDVPALNNHLGATSRLSPYLAIGMLSPRLCYL 293
Query: 289 EARK 292
EAR+
Sbjct: 294 EARQ 297
>gi|118590290|ref|ZP_01547693.1| DNA photolyase [Stappia aggregata IAM 12614]
gi|118437262|gb|EAV43900.1| DNA photolyase [Stappia aggregata IAM 12614]
Length = 478
Score = 40.0 bits (92), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 44/136 (32%), Positives = 63/136 (46%), Gaps = 16/136 (11%)
Query: 233 GEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQR---CALE 289
GE A E L GS FL + LK Y RN P P +S LSP+LHFG+IS ++ +
Sbjct: 200 GEAGASERL-GS---FLEEGLKGYGKLRNRPDLPN-VSRLSPHLHFGEISPRQIWHATQD 254
Query: 290 ARKARKLCPEAIDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREH 349
R + FL E I RE + N ++ P S E R + ++ +E
Sbjct: 255 VMDRRSSLGDDGMKFLSE-IAWREFSHNLLYHFPKLPS-----ENWRSTFDEYPW--KEP 306
Query: 350 IYTKEQFEKAQTADPV 365
E+++K QT P+
Sbjct: 307 DGELEKWQKGQTGYPI 322
>gi|85115208|ref|XP_964834.1| hypothetical protein NCU08626 [Neurospora crassa OR74A]
gi|130155|sp|P27526.1|PHR_NEUCR RecName: Full=Deoxyribodipyrimidine photo-lyase; AltName: Full=DNA
photolyase; AltName: Full=Photoreactivating enzyme
gi|3054|emb|CAA41549.1| deoxyribodipyrimidine photolyase [Neurospora crassa]
gi|28926629|gb|EAA35598.1| hypothetical protein NCU08626 [Neurospora crassa OR74A]
Length = 642
Score = 40.0 bits (92), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 52/104 (50%), Gaps = 8/104 (7%)
Query: 28 RGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKAR---QLGFMLR 84
R VV+W D R+ DN +L A +A + VP+ + L + L A R ++ FMLR
Sbjct: 134 RQAVVHWFKMDLRLHDNRSLWLASQKAKEAGVPLICLYVLSPEDLEAHLRAPIRVDFMLR 193
Query: 85 GLRLLQRNIEETFQILFFLFQGEAEDNIPNFVREC----GASLL 124
L +L+ ++E+ I ++ E +P ++E GAS L
Sbjct: 194 TLEVLKTDLED-LGIPLWVETVEKRKEVPTKIKELMKSWGASHL 236
>gi|257868228|ref|ZP_05647881.1| deoxyribodipyrimidine photo-lyase type I [Enterococcus
casseliflavus EC30]
gi|257874499|ref|ZP_05654152.1| deoxyribodipyrimidine photo-lyase type I [Enterococcus
casseliflavus EC10]
gi|257802342|gb|EEV31214.1| deoxyribodipyrimidine photo-lyase type I [Enterococcus
casseliflavus EC30]
gi|257808663|gb|EEV37485.1| deoxyribodipyrimidine photo-lyase type I [Enterococcus
casseliflavus EC10]
Length = 469
Score = 40.0 bits (92), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 42/79 (53%), Gaps = 7/79 (8%)
Query: 233 GEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARK 292
GED A + L+ F+ KRL Y DR+ P + S LSP+L FGQIS ++ ++
Sbjct: 202 GEDYAHKQLQA----FVQKRLAAYEKDRDIP-SIKGTSRLSPFLSFGQISIRKVWAACQE 256
Query: 293 ARKLCPEAIDTFLEELIVR 311
+A TFL+EL R
Sbjct: 257 MPSSTGKA--TFLKELAWR 273
>gi|189184449|ref|YP_001938234.1| deoxyribodipyrimidine photolyase, DNA photolyase [Orientia
tsutsugamushi str. Ikeda]
gi|189181220|dbj|BAG41000.1| deoxyribodipyrimidine photolyase, DNA photolyase [Orientia
tsutsugamushi str. Ikeda]
Length = 505
Score = 40.0 bits (92), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 68/316 (21%), Positives = 130/316 (41%), Gaps = 27/316 (8%)
Query: 32 VYWMFRDQRVRDNWALIHAVDQANKNNVPVAV-AFNLFDQFLGAKARQLGFMLRGLRLLQ 90
+ W+ R+ R+ DN A+ +++K +P+ + + F R+L F+ + L
Sbjct: 8 IVWLRRNLRLEDNKPFAEAL-KSSKKIIPIFIFDTTILQNFSNPLDRRLSFLANTIYNLN 66
Query: 91 RNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTD--FSPLREIRRCKDKICNRVSDS 148
++E L L+ G + + IP + + + D + P IR K +
Sbjct: 67 SELQELEGNLLVLY-GNSVEIIPKLIEKLNIQTIYADEEYDPENVIRDQKITNLLEFNGK 125
Query: 149 VTIHEVDAHNVV-PVWVASEKLEYSAKTLRGKINKLLPEYL-IDYPMLEQP---IEKWTG 203
+ V H ++ P + + K +Y + N +YL + +E+ ++
Sbjct: 126 SKLELVCDHLLLKPGSIVTHKKQYYMRY--NPYNTAFKQYLRKNCSCIERSNYRLDHRLV 183
Query: 204 TRQSIDWDSIIAAV--LRKGAE--VPEIGWCESGEDAAMEV-LKGSKDGFLTKRLKNYPT 258
+ +SID S+ + L GA + +IG+ ++ + K + F+ + +Y T
Sbjct: 184 SLESIDLSSLNLKIINLNHGASEILNQIGYTYQKDNIWQPIKAKNILNNFIQNNITSYRT 243
Query: 259 DRNNP--LKPRALSGLSPYLHFGQISAQRC---ALEARKARKLCPEAIDTFLEEL----- 308
+ N L S +SPYL FG +S + C A+ A + EAI +E
Sbjct: 244 NNTNQNLLYLNNSSTISPYLRFGLVSIRECFSKAIAADSKALITDEAIGKTEKEKGWIDG 303
Query: 309 IVRRELADNFCFYQPN 324
++ RE + F PN
Sbjct: 304 LIHREFYASLLFRFPN 319
>gi|238797755|ref|ZP_04641249.1| Deoxyribodipyrimidine photo-lyase [Yersinia mollaretii ATCC 43969]
gi|238718396|gb|EEQ10218.1| Deoxyribodipyrimidine photo-lyase [Yersinia mollaretii ATCC 43969]
Length = 481
Score = 40.0 bits (92), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 72/307 (23%), Positives = 118/307 (38%), Gaps = 54/307 (17%)
Query: 32 VYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLG--AKARQLGFMLRGLRLL 89
+ W D R+ DN AL HA Q + V +AV Q+ RQ F+ + L LL
Sbjct: 5 LVWFRHDLRITDNLAL-HAACQDEQAKV-MAVFIATPKQWAAHDMAPRQAAFLRQNLHLL 62
Query: 90 QRNIEETFQILFFLFQGEAEDNIPNFVRECGA----SLLVTDFSPLREIRRCKDKICNRV 145
Q + + L + + +D+I C +L L E+RR +
Sbjct: 63 QAALADRGIPLHYHQCADFQDSILWLADFCQQQQVDALFYNQQYELNEMRRDEAFTVQLN 122
Query: 146 SDSVTIHEVDAHNVVPVWVA----SEKLEYSAKTLRGKINKLLPEYLIDYP--------- 192
S+ H ++P +E + R I +L+ P
Sbjct: 123 RRSIACHSFHDSVLLPPGSVQTGNNEMYKIFTPFRRAFIQRLMMSDCRSVPAPKARQNAG 182
Query: 193 -MLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTK 251
+ P+E + +QS+D A GE+AA++ L+ F +
Sbjct: 183 AITLTPLEPFDYPQQSVDSQLFPA-----------------GEEAALQRLRS----FCRE 221
Query: 252 RLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAID-------TF 304
++++Y R+ P SGLSPYL G +S ++C + R CP+ ++ T+
Sbjct: 222 QVQDYLQQRDLPAVA-GTSGLSPYLALGILSPRQC---FNRLRAECPDLLESSDSGAFTW 277
Query: 305 LEELIVR 311
L ELI R
Sbjct: 278 LNELIWR 284
>gi|148241324|ref|YP_001226481.1| deoxyribodipyrimidine photolyase [Synechococcus sp. RCC307]
gi|147849634|emb|CAK27128.1| Deoxyribodipyrimidine photolyase [Synechococcus sp. RCC307]
Length = 467
Score = 40.0 bits (92), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 72/276 (26%), Positives = 109/276 (39%), Gaps = 52/276 (18%)
Query: 29 GPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNL-FDQFLGAKARQLGFMLRGLR 87
GP ++W RD R+ DN L AV + V V + A AR+ F+L LR
Sbjct: 2 GPWLFWHRRDLRLADNLGLA-AVSAITPEVMGVFVLDPAELEHPTMAPARRW-FLLESLR 59
Query: 88 LLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLV--TDFSPL-----REIRRCKDK 140
LQ+ + L L +G + +P ++ GA+ + D PL RE+
Sbjct: 60 ELQQRWRQAGSQL-LLLEGNPVELLPRLAQQLGAAGVAWNRDVEPLVRQRDRELAAALKA 118
Query: 141 ICNRVS----------DSVTIHEVDAHNVV-PVWVASEKLEYSAKTLRG--KINKLLPEY 187
I RV+ + + D + V P W + EK + AK + ++ LL
Sbjct: 119 IGVRVAADWDQLLVPPEQLKTGGGDPYRVYGPYWRSWEK-QPKAKPVPAPSELKALLKPD 177
Query: 188 LIDYPML-EQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKD 246
L P+L E P+E W G ++ C GE AA+E L +
Sbjct: 178 LSGLPVLNEVPVEPWEGA---------------------DLCPCRPGETAALEQL----E 212
Query: 247 GFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQIS 282
F + +++Y RN P S LS L G +S
Sbjct: 213 HFAARAMEHYCEGRNLP-GDEGTSTLSAALRAGSLS 247
>gi|323137318|ref|ZP_08072396.1| DNA photolyase, FAD-binding [Methylocystis sp. ATCC 49242]
gi|322397305|gb|EFX99828.1| DNA photolyase, FAD-binding [Methylocystis sp. ATCC 49242]
Length = 472
Score = 40.0 bits (92), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 70/317 (22%), Positives = 116/317 (36%), Gaps = 62/317 (19%)
Query: 29 GPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQF-----LGAKARQLGFML 83
P V W D R+ DN AL A ++ P+ + L D+ +G+ +R ++
Sbjct: 3 APAVVWFRNDLRLADNPALTAAA----RSGAPIIALYVLDDESAGEWRMGSASRW--WLH 56
Query: 84 RGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDF----------SPLRE 133
L L ++ + L +G AE + N V + GA + + S ++
Sbjct: 57 HSLTALAHDLAR-LGVTLTLRRGRAEFVLENIVADAGAGAVYWNRLYEPWAMRRDSEIKS 115
Query: 134 IRRCKDKICNRVSDSVTIHEVDAHN--------VVPVWVASEKLEYSAKTLRGKINKLLP 185
R + + + S+ N P W A E L P
Sbjct: 116 QLRARGVMVESFNGSLLFEPGGLRNKQGEPFRVFTPFWRACLAAEAPDAPLPA------P 169
Query: 186 EYLIDYPM-LEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGS 244
+ L P + W DW + R +GE AA+E L
Sbjct: 170 KKLTAAPPPASDALADWRLLPTKPDWAGGLRETWR------------AGEHAALERLAE- 216
Query: 245 KDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTF 304
F KR+++Y DR+ + +S +SP+LHFG++S +R E +A +A +
Sbjct: 217 ---FAKKRVRDYKIDRDF-MAREGVSRMSPHLHFGEVSPRRIWAEITEA---AGDAGAAY 269
Query: 305 LEELIVRRELADNFCFY 321
L E+ R FC +
Sbjct: 270 LREIGWR-----EFCHH 281
>gi|348533530|ref|XP_003454258.1| PREDICTED: methyltransferase-like protein 14-like [Oreochromis
niloticus]
Length = 456
Score = 40.0 bits (92), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 43/173 (24%), Positives = 76/173 (43%), Gaps = 46/173 (26%)
Query: 114 NFVRECGASLLVTDFSPLREIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSA 173
NF+R+ G + ++ LRE+ R KD++ + N P+++ ++ +
Sbjct: 131 NFIRDVGLADRFEEYPKLRELIRLKDEL------------IATTNTPPMYLQADPEHFDL 178
Query: 174 KTLRGKINKLLPEYLIDYPMLEQPIEKW------TGTRQSIDWDSIIAAVLRKGAEVPEI 227
K L+ K + +L LE P+E++ + T + WD I+ E+ EI
Sbjct: 179 KDLKCKFDVIL---------LEPPLEEYYRESGISHTERFWTWDDIMR------LEIEEI 223
Query: 228 G--------WCESGEDAAMEVLKGSKDGFLTKRLKN---YPTDRNNPLKPRAL 269
WC SGE + + K GF +R ++ T++NNP K +AL
Sbjct: 224 SALRSFVFLWCGSGEGLDLGRMCLRKWGF--RRCEDICWIKTNKNNPGKTKAL 274
>gi|194759941|ref|XP_001962202.1| GF14557 [Drosophila ananassae]
gi|190615899|gb|EDV31423.1| GF14557 [Drosophila ananassae]
Length = 539
Score = 39.7 bits (91), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 74/329 (22%), Positives = 136/329 (41%), Gaps = 30/329 (9%)
Query: 24 LDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNV-----PVAVAFNLFDQFLGAKARQ 78
+D K +V+W + RV DN AL AN P+ + ++ A +
Sbjct: 1 MDAKHATLVHWFRKGLRVHDNPALSQIFKVANTAPGKYFVRPIFILDPGILDWMQVGANR 60
Query: 79 LGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLV--TDFSPLREIRR 136
F+ + L L + +++ L F+ +G+ + P + LL TD P R
Sbjct: 61 WRFLQQTLHDLDQQLQKLGSRL-FVVRGKPAEVFPRIFKSWRVELLTFETDIEPYSLAR- 118
Query: 137 CKDKICNRV--SDSVTIHEVDAHNVV-PVWVASEKLEYSAKTLR---GKINKLLPEYLID 190
D ++ SD V + +H + P V ++ L + T + G + KL ++D
Sbjct: 119 --DSAVQKLAKSDGVKVETHCSHTIYNPELVIAKNLGKAPITYQKFLGIVEKLKLPTVLD 176
Query: 191 YP-MLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPE-IGWCE--SGEDAAMEVLKGS-K 245
P L++ ++ + D ++ + + + PE +G + GE A+ ++ S K
Sbjct: 177 LPEKLKEKVQPPKDDIEEKDSEAYDCPTMEQLVKRPEDLGPLKFPGGETEALRRMEESLK 236
Query: 246 DGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISA----QRCALEARKARKLCPEAI 301
D R + P N L+P + + LSPYL FG +S+ QR ++ K +
Sbjct: 237 DELWVARFEK-PNTAPNSLEP-STTVLSPYLKFGCLSSRLFHQRLKEILKRQTKHSQPPV 294
Query: 302 DTFLEELIVRRELADNFCFYQPNYDSLKG 330
+ ++ RE +PN+D + G
Sbjct: 295 SLIGQ--MMWREFYYTVAAAEPNFDRMLG 321
>gi|432845282|ref|XP_004065805.1| PREDICTED: methyltransferase-like protein 14-like [Oryzias latipes]
Length = 455
Score = 39.7 bits (91), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 38/167 (22%), Positives = 78/167 (46%), Gaps = 34/167 (20%)
Query: 114 NFVRECGASLLVTDFSPLREIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSA 173
NF+R+ G + ++ LRE+ R KD++ + + N P+++ ++ +
Sbjct: 131 NFIRDVGLADRFEEYPKLRELIRLKDEL------------IASTNTPPMYLQADPEHFDL 178
Query: 174 KTLRGKINKLLPEYLIDYPMLEQPIEKW------TGTRQSIDWDSIIAAVLRKGAEVPEI 227
+ L+ + + +L LE P+E++ + T + WD I+ + + +++
Sbjct: 179 RELKSQFDVIL---------LEPPLEEYYRESGISHTERFWTWDDIMRLEIEEISDLRSF 229
Query: 228 G--WCESGEDAAMEVLKGSKDGFLTKRLKN---YPTDRNNPLKPRAL 269
WC SGE + + K GF +R ++ T++NNP K +AL
Sbjct: 230 VFLWCGSGEGLDLGRMCLRKWGF--RRCEDICWIKTNKNNPGKTKAL 274
>gi|261213071|ref|ZP_05927355.1| deoxyribodipyrimidine photolyase [Vibrio sp. RC341]
gi|260838136|gb|EEX64813.1| deoxyribodipyrimidine photolyase [Vibrio sp. RC341]
Length = 469
Score = 39.7 bits (91), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 36/144 (25%), Positives = 56/144 (38%), Gaps = 10/144 (6%)
Query: 196 QPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLKN 255
QP E WT + + W A + P + E ++ F +++N
Sbjct: 170 QPAEPWTLSSEWASWVWNSAQTF----DYPRVD--SQSWPVDFETIRNQLRDFCRDQVQN 223
Query: 256 YPTDRNNPLKPRALSGLSPYLHFGQISAQRCA--LEARKARKLCPEAIDTFLEELIVRRE 313
Y R+ P + S LSPYL G +SA++C L + E +L ELI RE
Sbjct: 224 YHQQRDFPAR-EGTSVLSPYLAIGALSARQCVARLYRESSMGALSEGAQVWLSELIW-RE 281
Query: 314 LADNFCFYQPNYDSLKGAWEWARK 337
+ +PN + EW +
Sbjct: 282 FYQHLVAIEPNISKSRDFHEWGSR 305
>gi|74025462|ref|XP_829297.1| DNA photolyase [Trypanosoma brucei brucei strain 927/4 GUTat10.1]
gi|70834683|gb|EAN80185.1| DNA photolyase, putative [Trypanosoma brucei brucei strain 927/4
GUTat10.1]
Length = 848
Score = 39.7 bits (91), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 49/113 (43%), Gaps = 13/113 (11%)
Query: 31 VVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLG---------- 80
+V + D RV DN+AL A +A +A + D + A+ +G
Sbjct: 208 MVVFAANDMRVHDNYALALAATRAEAAGGLPVIAVTVVDYRMFAQPSAVGGFFRQSPMRA 267
Query: 81 -FMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGA--SLLVTDFSP 130
F L L L+ +E +I + G ED+IP V ECGA L T ++P
Sbjct: 268 RFFLETLAALRYKLERELRIPLLVRCGRPEDHIPRLVVECGAIDVFLTTQYTP 320
>gi|424863513|ref|ZP_18287426.1| deoxyribodipyrimidine photo-lyase [SAR86 cluster bacterium SAR86A]
gi|400758134|gb|EJP72345.1| deoxyribodipyrimidine photo-lyase [SAR86 cluster bacterium SAR86A]
Length = 472
Score = 39.7 bits (91), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 39/81 (48%), Gaps = 6/81 (7%)
Query: 247 GFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKL----CPEAID 302
+L K + Y DRN+P+ S LS YL G IS +RC LEA K + I
Sbjct: 216 SYLDKNIFKYAQDRNDPI-IDGTSRLSAYLASGIISPKRCILEALKLNNFELDSGEKGIV 274
Query: 303 TFLEELIVRRELADNFCFYQP 323
+++E I+ RE N F P
Sbjct: 275 KWIDE-IIWREFYKNIMFSFP 294
>gi|19528415|gb|AAL90322.1| RE11660p [Drosophila melanogaster]
Length = 540
Score = 39.7 bits (91), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 73/328 (22%), Positives = 131/328 (39%), Gaps = 28/328 (8%)
Query: 24 LDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNV-----PVAVAFNLFDQFLGAKARQ 78
+D +R +V+W + R+ DN AL H AN P+ + ++ A +
Sbjct: 1 MDSQRSTLVHWFRKGLRLHDNPALSHIFTAANAAPGRYFVRPIFILDPGILDWMQVGANR 60
Query: 79 LGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLV--TDFSPLREIRR 136
F+ + L L + + L F+ +G+ + P + +L TD P R
Sbjct: 61 WRFLQQTLEDLDNQLRKLNSRL-FVVRGKPAEVFPRIFKSWRVEMLTFETDIEPYSVTRD 119
Query: 137 CKDKICNRVSDSVTIHEVDAHNVV-PVWVASEKLEYSAKTLRG--------KINKLL--P 185
+ + ++ V + +H + P V ++ L + T + K+ K+L P
Sbjct: 120 AAVQKLAK-AEGVRVETHCSHTIYNPELVIAKNLGKAPITYQKFLGIVEQLKVPKVLGVP 178
Query: 186 EYLIDYPMLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGS- 244
E L + P P + + S +D L K E GE A+ ++ S
Sbjct: 179 EKLKNMPT---PPKDEVEQKDSAAYDCPTMKQLVKRPEELGPNKFPGGETEALRRMEESL 235
Query: 245 KDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTF 304
KD R + P N L+P + + LSPYL FG +SA+ + ++ K P+
Sbjct: 236 KDEIWVARFEK-PNTAPNSLEP-STTVLSPYLKFGCLSARLFNQKLKEIIKRQPKHSQPP 293
Query: 305 LEEL--IVRRELADNFCFYQPNYDSLKG 330
+ + ++ RE +PN+D + G
Sbjct: 294 VSLIGQLMWREFYYTVAAAEPNFDRMLG 321
>gi|17137248|ref|NP_477188.1| (6-4)-photolyase, isoform B [Drosophila melanogaster]
gi|24585455|ref|NP_724274.1| (6-4)-photolyase, isoform A [Drosophila melanogaster]
gi|442628599|ref|NP_001260632.1| (6-4)-photolyase, isoform C [Drosophila melanogaster]
gi|442628601|ref|NP_001260633.1| (6-4)-photolyase, isoform D [Drosophila melanogaster]
gi|7298691|gb|AAF53904.1| (6-4)-photolyase, isoform B [Drosophila melanogaster]
gi|22946921|gb|AAN11080.1| (6-4)-photolyase, isoform A [Drosophila melanogaster]
gi|201065459|gb|ACH92139.1| FI01404p [Drosophila melanogaster]
gi|440213996|gb|AGB93167.1| (6-4)-photolyase, isoform C [Drosophila melanogaster]
gi|440213997|gb|AGB93168.1| (6-4)-photolyase, isoform D [Drosophila melanogaster]
Length = 540
Score = 39.7 bits (91), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 73/328 (22%), Positives = 131/328 (39%), Gaps = 28/328 (8%)
Query: 24 LDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNV-----PVAVAFNLFDQFLGAKARQ 78
+D +R +V+W + R+ DN AL H AN P+ + ++ A +
Sbjct: 1 MDSQRSTLVHWFRKGLRLHDNPALSHIFTAANAAPGKYFVRPIFILDPGILDWMQVGANR 60
Query: 79 LGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLV--TDFSPLREIRR 136
F+ + L L + + L F+ +G+ + P + +L TD P R
Sbjct: 61 WRFLQQTLEDLDNQLRKLNSRL-FVVRGKPAEVFPRIFKSWRVEMLTFETDIEPYSVTRD 119
Query: 137 CKDKICNRVSDSVTIHEVDAHNVV-PVWVASEKLEYSAKTLRG--------KINKLL--P 185
+ + ++ V + +H + P V ++ L + T + K+ K+L P
Sbjct: 120 AAVQKLAK-AEGVRVETHCSHTIYNPELVIAKNLGKAPITYQKFLGIVEQLKVPKVLGVP 178
Query: 186 EYLIDYPMLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGS- 244
E L + P P + + S +D L K E GE A+ ++ S
Sbjct: 179 EKLKNMPT---PPKDEVEQKDSAAYDCPTMKQLVKRPEELGPNKFPGGETEALRRMEESL 235
Query: 245 KDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTF 304
KD R + P N L+P + + LSPYL FG +SA+ + ++ K P+
Sbjct: 236 KDEIWVARFEK-PNTAPNSLEP-STTVLSPYLKFGCLSARLFNQKLKEIIKRQPKHSQPP 293
Query: 305 LEEL--IVRRELADNFCFYQPNYDSLKG 330
+ + ++ RE +PN+D + G
Sbjct: 294 VSLIGQLMWREFYYTVAAAEPNFDRMLG 321
>gi|422933175|ref|ZP_16966098.1| hypothetical protein HMPREF9094_0510, partial [Fusobacterium
nucleatum subsp. animalis ATCC 51191]
gi|339891487|gb|EGQ80461.1| hypothetical protein HMPREF9094_0510 [Fusobacterium nucleatum
subsp. animalis ATCC 51191]
Length = 1307
Score = 39.7 bits (91), Expect = 2.5, Method: Composition-based stats.
Identities = 32/141 (22%), Positives = 61/141 (43%), Gaps = 30/141 (21%)
Query: 245 KDGFLTKRLKNYPTDRNNPLKPRALSGLS----PYLHFGQISAQR-----CALEARKARK 295
KDG T ++ + ++RN ++ + + L+ Y G++S L+ +K K
Sbjct: 373 KDGIFTNKVGDIESERNIKIEAKDIKNLAEVKGSYKVVGKVSGNESNVDMSKLDIKKYNK 432
Query: 296 LCPEAIDTFLEELIVRRELADNFCFYQPN----------------YDSL-KGAWEWARKS 338
L + +++F +E I+++ D + + N D L GAW+W +
Sbjct: 433 LSADIVNSFFKEYIIKKVAKDKNIYIRDNDIEATEQGGNFRVGPLKDRLASGAWDWEKDK 492
Query: 339 LKD----HASDKREHIYTKEQ 355
K ++DK E YT E+
Sbjct: 493 SKAGVYLSSADKIESNYTSEK 513
>gi|336265663|ref|XP_003347602.1| hypothetical protein SMAC_04910 [Sordaria macrospora k-hell]
gi|380096469|emb|CCC06517.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 554
Score = 39.7 bits (91), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 39/70 (55%), Gaps = 3/70 (4%)
Query: 28 RGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKAR---QLGFMLR 84
R VV+W D R+ DN +L A +A + VP+ + L + L A R ++ FMLR
Sbjct: 108 RQAVVHWFKMDLRLHDNRSLWLASQKAQEAGVPLICLYVLSPEDLEAHLRAPIRVDFMLR 167
Query: 85 GLRLLQRNIE 94
L +L+R++E
Sbjct: 168 TLEILKRDLE 177
>gi|429886347|ref|ZP_19367906.1| Deoxyribodipyrimidine photolyase [Vibrio cholerae PS15]
gi|429226676|gb|EKY32756.1| Deoxyribodipyrimidine photolyase [Vibrio cholerae PS15]
Length = 469
Score = 39.7 bits (91), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 46/104 (44%), Gaps = 4/104 (3%)
Query: 236 AAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCA--LEARKA 293
A E ++ F +R+++Y R+ P + S LSPYL G +SA++C L +
Sbjct: 204 ADFETVRAQLRDFCRERVQDYHQTRDFPAQ-EGTSSLSPYLAIGVLSARQCVARLYHESS 262
Query: 294 RKLCPEAIDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARK 337
E +L ELI RE + +PN + EW +
Sbjct: 263 MGEISEGAQVWLSELIW-REFYQHLVAIEPNLSKSRDFVEWGAR 305
>gi|375133173|ref|YP_005049581.1| deoxyribodipyrimidine photolyase, cyclobutane pyrimidine
dimer-specific [Vibrio furnissii NCTC 11218]
gi|315182348|gb|ADT89261.1| deoxyribodipyrimidine photolyase, cyclobutane pyrimidine
dimer-specific [Vibrio furnissii NCTC 11218]
Length = 475
Score = 39.7 bits (91), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 51/122 (41%), Gaps = 15/122 (12%)
Query: 229 WCES--------GEDA---AMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLH 277
WCES DA + ++G F ++L +Y R+ P + S LSPYL
Sbjct: 186 WCESQPFTHPRVSSDAWPVDFDTIRGRLRAFCQEQLDDYKQQRDFPAQ-DGTSSLSPYLA 244
Query: 278 FGQISAQRCA--LEARKARKLCPEAIDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWA 335
G +S ++C + A A + T+L ELI RE + ++P K W
Sbjct: 245 IGALSPRQCIARVYAESAMGALSDGAQTWLSELIW-REFYQHLLTFEPKLSKSKDFLAWG 303
Query: 336 RK 337
+
Sbjct: 304 AR 305
>gi|330446256|ref|ZP_08309908.1| putative uncharacterized protein [Photobacterium leiognathi subsp.
mandapamensis svers.1.1.]
gi|328490447|dbj|GAA04405.1| putative uncharacterized protein [Photobacterium leiognathi subsp.
mandapamensis svers.1.1.]
Length = 395
Score = 39.3 bits (90), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 46/86 (53%), Gaps = 1/86 (1%)
Query: 38 DQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQRNIEETF 97
DQ W++I+A+ ANK+ PV + LF+ + +++ G+M R L L ++++
Sbjct: 71 DQAREQIWSIINAIALANKHQQPVTLQVGLFEYGVEHQSKHDGYM-RLLSPLTSDLDQFS 129
Query: 98 QILFFLFQGEAEDNIPNFVRECGASL 123
+ LF + G +++ P ++E L
Sbjct: 130 EALFAIKIGGSKEYAPKAIKEAANRL 155
>gi|410926259|ref|XP_003976596.1| PREDICTED: methyltransferase-like protein 14-like [Takifugu
rubripes]
Length = 455
Score = 39.3 bits (90), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 41/173 (23%), Positives = 77/173 (44%), Gaps = 46/173 (26%)
Query: 114 NFVRECGASLLVTDFSPLREIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSA 173
NF+R+ G + ++ LRE+ R KD++ + + N P+++ ++ +
Sbjct: 131 NFIRDVGLADRFEEYPKLRELIRLKDEL------------ISSTNTPPMYLQADPEHFDL 178
Query: 174 KTLRGKINKLLPEYLIDYPMLEQPIEKW------TGTRQSIDWDSIIAAVLRKGAEVPEI 227
+ L+ K + +L LE P+E++ + T + WD I+ E+ EI
Sbjct: 179 QDLKCKFDVIL---------LEPPLEEYYRESGISHTERFWTWDDIMK------LEIEEI 223
Query: 228 G--------WCESGEDAAMEVLKGSKDGFLTKRLKN---YPTDRNNPLKPRAL 269
WC SGE + + K GF +R ++ T++NNP K +A+
Sbjct: 224 SALRSFVFLWCGSGEGLDLGRMCLRKWGF--RRCEDICWIKTNKNNPGKTKAM 274
>gi|422909456|ref|ZP_16944104.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HE-09]
gi|424658839|ref|ZP_18096090.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HE-16]
gi|341635145|gb|EGS59869.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HE-09]
gi|408053914|gb|EKG88912.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HE-16]
Length = 469
Score = 39.3 bits (90), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 46/104 (44%), Gaps = 4/104 (3%)
Query: 236 AAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCA--LEARKA 293
A E ++ F +R+++Y R+ P + S LSPYL G +SA++C L +
Sbjct: 204 ADFETVRAQLRDFCRERVQDYHQARDFPAR-EGTSSLSPYLAIGVLSARQCVARLYHESS 262
Query: 294 RKLCPEAIDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARK 337
E +L ELI RE + +PN + EW +
Sbjct: 263 MGELSEGAQVWLSELIW-REFYQHLVAIEPNLSKSRDFVEWGAR 305
>gi|262173169|ref|ZP_06040846.1| deoxyribodipyrimidine photolyase [Vibrio mimicus MB-451]
gi|261890527|gb|EEY36514.1| deoxyribodipyrimidine photolyase [Vibrio mimicus MB-451]
Length = 469
Score = 39.3 bits (90), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 47/102 (46%), Gaps = 4/102 (3%)
Query: 238 MEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLC 297
EV++ F +R+++Y R+ P + S LSPYL G +SA++C + ++
Sbjct: 206 FEVIRTQLRDFCRERVQDYHQWRDFPAR-EGTSILSPYLAIGALSARQCVARLYRESEMS 264
Query: 298 --PEAIDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARK 337
E +L ELI RE + +PN + EW +
Sbjct: 265 ALSEGAQVWLSELIW-REFYQHLVAIEPNISKSRDFLEWGAR 305
>gi|297180123|gb|ADI16346.1| deoxyribodipyrimidine photolyase [uncultured bacterium HF130_01F24]
Length = 478
Score = 39.3 bits (90), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 46/95 (48%), Gaps = 10/95 (10%)
Query: 233 GEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARK 292
GE +VLK FL + L NY R+ P K A+S LSPYLHFG++S +
Sbjct: 205 GERGGEQVLKL----FLERGLCNYKIGRDFPDK-EAVSRLSPYLHFGELSPNYVWHKVNN 259
Query: 293 ARKLCPEAIDTFLEEL---IVRRELADNFCFYQPN 324
L E I+T E +V RE + + Y P+
Sbjct: 260 FAVL--ENIETQAEHFHRELVWREFSYSLIHYFPD 292
>gi|15600828|ref|NP_232458.1| deoxyribodipyrimidine photolyase [Vibrio cholerae O1 biovar El Tor
str. N16961]
gi|121585968|ref|ZP_01675761.1| deoxyribodipyrimidine photolyase, cyclobutane pyrimidine
dimer-specific [Vibrio cholerae 2740-80]
gi|153820061|ref|ZP_01972728.1| deoxyribodipyrimidine photolyase, cyclobutane pyrimidine
dimer-specific [Vibrio cholerae NCTC 8457]
gi|227811685|ref|YP_002811695.1| deoxyribodipyrimidine photolyase [Vibrio cholerae M66-2]
gi|229506767|ref|ZP_04396276.1| deoxyribodipyrimidine photolyase [Vibrio cholerae BX 330286]
gi|229510438|ref|ZP_04399918.1| deoxyribodipyrimidine photolyase [Vibrio cholerae B33]
gi|229517431|ref|ZP_04406876.1| deoxyribodipyrimidine photolyase [Vibrio cholerae RC9]
gi|229605241|ref|YP_002875945.1| deoxyribodipyrimidine photolyase [Vibrio cholerae MJ-1236]
gi|254850324|ref|ZP_05239674.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae MO10]
gi|255746116|ref|ZP_05420063.1| deoxyribodipyrimidine photolyase [Vibrio cholera CIRS 101]
gi|262158603|ref|ZP_06029717.1| deoxyribodipyrimidine photolyase [Vibrio cholerae INDRE 91/1]
gi|298499922|ref|ZP_07009728.1| deoxyribodipyrimidine photolyase [Vibrio cholerae MAK 757]
gi|360038062|ref|YP_004939824.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae O1 str.
2010EL-1786]
gi|379743509|ref|YP_005334561.1| deoxyribodipyrimidine photolyase [Vibrio cholerae IEC224]
gi|417812104|ref|ZP_12458765.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-49A2]
gi|417816596|ref|ZP_12463226.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HCUF01]
gi|418329963|ref|ZP_12940997.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-06A1]
gi|418337496|ref|ZP_12946391.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-23A1]
gi|418339492|ref|ZP_12948380.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-28A1]
gi|418349168|ref|ZP_12953900.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-43A1]
gi|418353785|ref|ZP_12956510.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-61A1]
gi|419824099|ref|ZP_14347628.1| DNA photolyase family protein [Vibrio cholerae CP1033(6)]
gi|421316788|ref|ZP_15767358.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae CP1032(5)]
gi|421319836|ref|ZP_15770394.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae CP1038(11)]
gi|421323878|ref|ZP_15774405.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae CP1041(14)]
gi|421326850|ref|ZP_15777368.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae CP1042(15)]
gi|421331937|ref|ZP_15782416.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae CP1046(19)]
gi|421335570|ref|ZP_15786033.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae CP1048(21)]
gi|421341106|ref|ZP_15791536.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-20A2]
gi|421346109|ref|ZP_15796493.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-46A1]
gi|422885232|ref|ZP_16931672.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-40A1]
gi|422897943|ref|ZP_16935363.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-48A1]
gi|422904100|ref|ZP_16939052.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-70A1]
gi|422915375|ref|ZP_16949824.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HFU-02]
gi|422926998|ref|ZP_16960003.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-38A1]
gi|423146338|ref|ZP_17133906.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-19A1]
gi|423148099|ref|ZP_17135477.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-21A1]
gi|423151885|ref|ZP_17139116.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-22A1]
gi|423158508|ref|ZP_17145521.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-32A1]
gi|423162314|ref|ZP_17149186.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-33A2]
gi|423162508|ref|ZP_17149374.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-48B2]
gi|423732330|ref|ZP_17705627.1| DNA photolyase family protein [Vibrio cholerae HC-17A1]
gi|423736965|ref|ZP_17710078.1| DNA photolyase family protein [Vibrio cholerae HC-50A2]
gi|423900591|ref|ZP_17727949.1| DNA photolyase family protein [Vibrio cholerae HC-62A1]
gi|423912133|ref|ZP_17728649.1| DNA photolyase family protein [Vibrio cholerae HC-77A1]
gi|423999959|ref|ZP_17743116.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-17A2]
gi|424004591|ref|ZP_17747596.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-37A1]
gi|424021751|ref|ZP_17761460.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-62B1]
gi|424028401|ref|ZP_17767998.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-69A1]
gi|424587687|ref|ZP_18027259.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae CP1030(3)]
gi|424592498|ref|ZP_18031913.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae CP1040(13)]
gi|424596361|ref|ZP_18035668.1| deoxyribodipyrimidine photo-lyase [Vibrio Cholerae CP1044(17)]
gi|424603214|ref|ZP_18042348.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae CP1047(20)]
gi|424605046|ref|ZP_18044033.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae CP1050(23)]
gi|424607951|ref|ZP_18046885.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-39A1]
gi|424614591|ref|ZP_18053371.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-41A1]
gi|424617076|ref|ZP_18055761.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-42A1]
gi|424620972|ref|ZP_18059501.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-47A1]
gi|424643041|ref|ZP_18080819.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-56A2]
gi|424650106|ref|ZP_18087709.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-57A2]
gi|424654938|ref|ZP_18092256.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-81A2]
gi|440711204|ref|ZP_20891845.1| deoxyribodipyrimidine photolyase [Vibrio cholerae 4260B]
gi|443505134|ref|ZP_21072075.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-64A1]
gi|443509033|ref|ZP_21075783.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-65A1]
gi|443512877|ref|ZP_21079500.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-67A1]
gi|443516423|ref|ZP_21082923.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-68A1]
gi|443521124|ref|ZP_21087454.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-71A1]
gi|443521284|ref|ZP_21087606.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-72A2]
gi|443530056|ref|ZP_21096073.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-7A1]
gi|443532706|ref|ZP_21098709.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-80A1]
gi|443537421|ref|ZP_21103279.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-81A1]
gi|449057517|ref|ZP_21735813.1| Deoxyribodipyrimidine photolyase [Vibrio cholerae O1 str. Inaba
G4222]
gi|81858027|sp|Q9KNA8.1|PHR_VIBCH RecName: Full=Deoxyribodipyrimidine photo-lyase; AltName: Full=DNA
photolyase; AltName: Full=Photoreactivating enzyme
gi|9657440|gb|AAF95971.1| deoxyribodipyrimidine photolyase [Vibrio cholerae O1 biovar El Tor
str. N16961]
gi|121549904|gb|EAX59924.1| deoxyribodipyrimidine photolyase, cyclobutane pyrimidine
dimer-specific [Vibrio cholerae 2740-80]
gi|126509396|gb|EAZ71990.1| deoxyribodipyrimidine photolyase, cyclobutane pyrimidine
dimer-specific [Vibrio cholerae NCTC 8457]
gi|227010827|gb|ACP07038.1| deoxyribodipyrimidine photolyase [Vibrio cholerae M66-2]
gi|229345467|gb|EEO10440.1| deoxyribodipyrimidine photolyase [Vibrio cholerae RC9]
gi|229352883|gb|EEO17823.1| deoxyribodipyrimidine photolyase [Vibrio cholerae B33]
gi|229357118|gb|EEO22036.1| deoxyribodipyrimidine photolyase [Vibrio cholerae BX 330286]
gi|229371727|gb|ACQ62149.1| deoxyribodipyrimidine photolyase [Vibrio cholerae MJ-1236]
gi|254846029|gb|EET24443.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae MO10]
gi|255735870|gb|EET91268.1| deoxyribodipyrimidine photolyase [Vibrio cholera CIRS 101]
gi|262029483|gb|EEY48133.1| deoxyribodipyrimidine photolyase [Vibrio cholerae INDRE 91/1]
gi|297541903|gb|EFH77954.1| deoxyribodipyrimidine photolyase [Vibrio cholerae MAK 757]
gi|340039746|gb|EGR00719.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HCUF01]
gi|340044924|gb|EGR05872.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-49A2]
gi|341630144|gb|EGS55247.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-70A1]
gi|341631059|gb|EGS56000.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-40A1]
gi|341631141|gb|EGS56081.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-48A1]
gi|341631864|gb|EGS56740.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HFU-02]
gi|341645075|gb|EGS69231.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-38A1]
gi|356421241|gb|EHH74744.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-19A1]
gi|356424231|gb|EHH77646.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-21A1]
gi|356426470|gb|EHH79778.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-06A1]
gi|356430880|gb|EHH84085.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-23A1]
gi|356434968|gb|EHH88128.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-32A1]
gi|356436434|gb|EHH89548.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-22A1]
gi|356440411|gb|EHH93352.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-33A2]
gi|356442892|gb|EHH95725.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-28A1]
gi|356446030|gb|EHH98830.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-43A1]
gi|356454850|gb|EHI07497.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-61A1]
gi|356457717|gb|EHI10224.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-48B2]
gi|356649216|gb|AET29270.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae O1 str.
2010EL-1786]
gi|378796103|gb|AFC59573.1| deoxyribodipyrimidine photolyase [Vibrio cholerae IEC224]
gi|395919246|gb|EJH30069.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae CP1032(5)]
gi|395921892|gb|EJH32711.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae CP1041(14)]
gi|395924724|gb|EJH35526.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae CP1038(11)]
gi|395930735|gb|EJH41481.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae CP1046(19)]
gi|395933775|gb|EJH44514.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae CP1042(15)]
gi|395935252|gb|EJH45987.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae CP1048(21)]
gi|395938590|gb|EJH49282.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-20A2]
gi|395947636|gb|EJH58291.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-46A1]
gi|395964476|gb|EJH74693.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-42A1]
gi|395966295|gb|EJH76422.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-56A2]
gi|395969260|gb|EJH79147.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-57A2]
gi|395971527|gb|EJH81187.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae CP1030(3)]
gi|395973176|gb|EJH82746.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae CP1047(20)]
gi|395975239|gb|EJH84735.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-47A1]
gi|408009783|gb|EKG47676.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-41A1]
gi|408015828|gb|EKG53399.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-39A1]
gi|408043105|gb|EKG79126.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae CP1040(13)]
gi|408048055|gb|EKG83526.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae CP1050(23)]
gi|408049864|gb|EKG85052.1| deoxyribodipyrimidine photo-lyase [Vibrio Cholerae CP1044(17)]
gi|408058760|gb|EKG93545.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-81A2]
gi|408613762|gb|EKK87048.1| DNA photolyase family protein [Vibrio cholerae CP1033(6)]
gi|408620829|gb|EKK93833.1| DNA photolyase family protein [Vibrio cholerae HC-17A1]
gi|408652134|gb|EKL23366.1| DNA photolyase family protein [Vibrio cholerae HC-50A2]
gi|408653028|gb|EKL24205.1| DNA photolyase family protein [Vibrio cholerae HC-62A1]
gi|408664204|gb|EKL35043.1| DNA photolyase family protein [Vibrio cholerae HC-77A1]
gi|408850645|gb|EKL90594.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-37A1]
gi|408854708|gb|EKL94456.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-17A2]
gi|408877826|gb|EKM16851.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-69A1]
gi|408880773|gb|EKM19691.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-62B1]
gi|439972691|gb|ELP48934.1| deoxyribodipyrimidine photolyase [Vibrio cholerae 4260B]
gi|443430432|gb|ELS73001.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-64A1]
gi|443434270|gb|ELS80427.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-65A1]
gi|443438064|gb|ELS87794.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-67A1]
gi|443442174|gb|ELS95487.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-68A1]
gi|443445153|gb|ELT01875.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-71A1]
gi|443452607|gb|ELT12789.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-72A2]
gi|443459626|gb|ELT27020.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-7A1]
gi|443464052|gb|ELT35000.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-80A1]
gi|443467430|gb|ELT42086.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-81A1]
gi|448263228|gb|EMB00475.1| Deoxyribodipyrimidine photolyase [Vibrio cholerae O1 str. Inaba
G4222]
Length = 469
Score = 39.3 bits (90), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 46/104 (44%), Gaps = 4/104 (3%)
Query: 236 AAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCA--LEARKA 293
A E ++ F +R+++Y R+ P + S LSPYL G +SA++C L +
Sbjct: 204 ADFETVRAQLRDFCRERVQDYHQARDFPAR-EGTSSLSPYLAIGVLSARQCVARLYHESS 262
Query: 294 RKLCPEAIDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARK 337
E +L ELI RE + +PN + EW +
Sbjct: 263 MGELSEGAQVWLSELIW-REFYQHLVAIEPNLSKSRDFVEWGAR 305
>gi|261335266|emb|CBH18260.1| DNA photolyase, putative [Trypanosoma brucei gambiense DAL972]
Length = 848
Score = 39.3 bits (90), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 49/113 (43%), Gaps = 13/113 (11%)
Query: 31 VVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLG---------- 80
+V + D RV DN+AL A +A +A + D + A+ +G
Sbjct: 208 MVVFAANDMRVHDNYALALAATRAEAAGGLPVIAVTVVDYRMFAQPSAVGGFFRQSPMRA 267
Query: 81 -FMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGA--SLLVTDFSP 130
F L L L+ +E +I + G ED+IP V ECGA L T ++P
Sbjct: 268 RFFLETLAALRYKLERELRIPLLVRCGRPEDHIPRLVVECGAIDVFLTTQYAP 320
>gi|386718155|ref|YP_006184481.1| Deoxyribodipyrimidine photolyase [Stenotrophomonas maltophilia
D457]
gi|384077717|emb|CCH12306.1| Deoxyribodipyrimidine photolyase [Stenotrophomonas maltophilia
D457]
Length = 471
Score = 39.3 bits (90), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 42/82 (51%), Gaps = 6/82 (7%)
Query: 231 ESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEA 290
+ GE A+E L +DG L+ Y R+ P + S LSP+LHFG+I+ R A
Sbjct: 201 QPGEAGALEALSVFEDG----ALRGYREQRDLPDR-VGTSRLSPHLHFGEIAPWRIAHAL 255
Query: 291 RKARKLCPEA-IDTFLEELIVR 311
+ R +A ID +L +L R
Sbjct: 256 ERLRSAGTDADIDGYLRQLGWR 277
>gi|338738139|ref|YP_004675101.1| DNA photolyase FAD-binding protein [Hyphomicrobium sp. MC1]
gi|337758702|emb|CCB64527.1| DNA photolyase FAD-binding protein [Hyphomicrobium sp. MC1]
Length = 487
Score = 39.3 bits (90), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 85/338 (25%), Positives = 122/338 (36%), Gaps = 58/338 (17%)
Query: 31 VVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQF-----LGAKARQLGFMLRG 85
+ W D R+ D+ AL AV K PV F L D LG +R ++ +
Sbjct: 9 TIVWFRNDLRLCDHPALTAAV----KRGGPVIALFVLDDAAAGCWKLGGASRW--WLAKS 62
Query: 86 LRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGAS--LLVTDFSPLRE---------- 133
L L +I + L L +G+ E + V E GA+ + + P +
Sbjct: 63 LEALSHDIAQRGARLI-LRRGDTESILKRLVDESGATAVYVTRGYEPWAKGLEEKLHKSF 121
Query: 134 ------IRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEY 187
+R ++ D T P W K E+SA L P
Sbjct: 122 GGSGVVFKRFGGRLLREPEDLRTSSGAAYQVFTPFWRVFRK-EFSAPKALAAPRHLGP-- 178
Query: 188 LIDYPMLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDG 247
+ + I W DW +A R G E A LK
Sbjct: 179 -VPDAIASDDISDWKLAPTKPDWSGGLAEAWRPG------------ERGAQLRLKN---- 221
Query: 248 FLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPE---AIDTF 304
F+++ L NY R+ L S LSP+L FG+IS C A +A A++TF
Sbjct: 222 FVSEGLSNYDDGRDR-LNAEGTSRLSPHLAFGEISPAACWRAAAEASHQTHSSDGAVETF 280
Query: 305 LEELIVRR-ELADNFCFYQPNYDSLK---GAWEWARKS 338
L+EL R A F F Q + L+ A+ WA+ S
Sbjct: 281 LKELAWREFSYALLFQFPQMPDEPLRDEFAAFPWAKSS 318
>gi|183179740|ref|ZP_02957951.1| deoxyribodipyrimidine photolyase, cyclobutane pyrimidine
dimer-specific [Vibrio cholerae MZO-3]
gi|183013151|gb|EDT88451.1| deoxyribodipyrimidine photolyase, cyclobutane pyrimidine
dimer-specific [Vibrio cholerae MZO-3]
Length = 469
Score = 39.3 bits (90), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 46/104 (44%), Gaps = 4/104 (3%)
Query: 236 AAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCA--LEARKA 293
A E ++ F +R+++Y R+ P + S LSPYL G +SA++C L +
Sbjct: 204 ADFETVRAQLRDFCRERVQDYHQARDFPAR-EGTSSLSPYLAIGVLSARQCVARLYHESS 262
Query: 294 RKLCPEAIDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARK 337
E +L ELI RE + +PN + EW +
Sbjct: 263 MGELSEGAQVWLSELIW-REFYQHLVAIEPNLSKSRDFVEWGAR 305
>gi|229527954|ref|ZP_04417345.1| deoxyribodipyrimidine photolyase [Vibrio cholerae 12129(1)]
gi|229334316|gb|EEN99801.1| deoxyribodipyrimidine photolyase [Vibrio cholerae 12129(1)]
Length = 469
Score = 39.3 bits (90), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 46/104 (44%), Gaps = 4/104 (3%)
Query: 236 AAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCA--LEARKA 293
A E ++ F +R+++Y R+ P + S LSPYL G +SA++C L +
Sbjct: 204 ADFETVRAQLRDFCRERVQDYHQARDFPAR-EGTSSLSPYLAIGVLSARQCVARLYHESS 262
Query: 294 RKLCPEAIDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARK 337
E +L ELI RE + +PN + EW +
Sbjct: 263 MGELSEGAQVWLSELIW-REFYQHLVAIEPNLSKSRDFVEWGAR 305
>gi|407406842|gb|EKF30945.1| DNA photolyase, putative,cryptochrome, putative [Trypanosoma cruzi
marinkellei]
Length = 874
Score = 39.3 bits (90), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 47/113 (41%), Gaps = 13/113 (11%)
Query: 31 VVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLG---------- 80
+V + D R+ DN+ L A +A +A + D A+ +G
Sbjct: 225 MVVFAANDMRIHDNYTLALAAVRAEAAGGLPVIAVAVIDYRTFAQPSAVGGYFRQSPMRA 284
Query: 81 -FMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGAS--LLVTDFSP 130
F L L L+ IEE + + G E+++P ECGA+ + T ++P
Sbjct: 285 RFFLETLAKLRATIEEELHVPLLIRCGRPEEHVPRLAVECGATDVFMTTQYAP 337
>gi|297579803|ref|ZP_06941730.1| deoxyribodipyrimidine photolyase [Vibrio cholerae RC385]
gi|297535449|gb|EFH74283.1| deoxyribodipyrimidine photolyase [Vibrio cholerae RC385]
Length = 469
Score = 39.3 bits (90), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 46/104 (44%), Gaps = 4/104 (3%)
Query: 236 AAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCA--LEARKA 293
A E ++ F +R+++Y R+ P + S LSPYL G +SA++C L +
Sbjct: 204 ADFETVRAQLRDFCRERVQDYHQARDFPAR-EGTSSLSPYLAIGVLSARQCVARLYHESS 262
Query: 294 RKLCPEAIDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARK 337
E +L ELI RE + +PN + EW +
Sbjct: 263 MGELSEGAQVWLSELIW-REFYQHLVAIEPNLSKSRDFVEWGAR 305
>gi|153212812|ref|ZP_01948448.1| deoxyribodipyrimidine photolyase, cyclobutane pyrimidine
dimer-specific [Vibrio cholerae 1587]
gi|422306345|ref|ZP_16393526.1| DNA photolyase family protein [Vibrio cholerae CP1035(8)]
gi|124116325|gb|EAY35145.1| deoxyribodipyrimidine photolyase, cyclobutane pyrimidine
dimer-specific [Vibrio cholerae 1587]
gi|408626618|gb|EKK99461.1| DNA photolyase family protein [Vibrio cholerae CP1035(8)]
Length = 469
Score = 39.3 bits (90), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 46/104 (44%), Gaps = 4/104 (3%)
Query: 236 AAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCA--LEARKA 293
A E ++ F +R+++Y R+ P + S LSPYL G +SA++C L +
Sbjct: 204 ADFETVRAQLRDFCRERVQDYHQARDFPAR-EGTSSLSPYLAIGVLSARQCVARLYHESS 262
Query: 294 RKLCPEAIDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARK 337
E +L ELI RE + +PN + EW +
Sbjct: 263 MGELSEGAQVWLSELIW-REFYQHLVAIEPNLSKSRDFVEWGAR 305
>gi|195580452|ref|XP_002080051.1| GD21692 [Drosophila simulans]
gi|194192060|gb|EDX05636.1| GD21692 [Drosophila simulans]
Length = 540
Score = 39.3 bits (90), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 70/325 (21%), Positives = 130/325 (40%), Gaps = 22/325 (6%)
Query: 24 LDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNV-----PVAVAFNLFDQFLGAKARQ 78
+D +R +V+W + RV DN AL H AN P+ + ++ A +
Sbjct: 1 MDAQRSTLVHWFRKGLRVHDNPALSHIFTAANAAPGKYFVRPIFILDPGILDWMQVGANR 60
Query: 79 LGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLV--TDFSPLREIRR 136
F+ + L L + + L F+ +G+ + P + +L TD P R
Sbjct: 61 WRFLQQTLEDLDNQLRKLDSRL-FVVRGKPAEVFPRIFKSWRVEMLTFETDIEPYSLTRD 119
Query: 137 CKDKICNRVSDSVTIHEVDAHNVV-PVWVASEKLEYSAKTLR---GKINKLLPEYLIDYP 192
+ + ++ V + +H + P V ++ L + T + G +++L ++ P
Sbjct: 120 AAVQKLAK-AEGVKVETHCSHTIYNPELVIAKNLGKAPITYQKFLGIVDQLKVPKVLGVP 178
Query: 193 ----MLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGS-KDG 247
+ P + + S +D L K E GE A+ ++ S KD
Sbjct: 179 EKLKKMHTPPKDEVEQKDSAAYDCPTMEQLVKRPEELGPNKFPGGETEALRRMEESLKDE 238
Query: 248 FLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEE 307
R + P N L+P + + LSPYL FG +SA+ + ++ K P+ +
Sbjct: 239 IWVARFEK-PNTAPNSLEP-STTVLSPYLKFGCLSARLFNQKLKEIIKRQPKHSQPPVSL 296
Query: 308 L--IVRRELADNFCFYQPNYDSLKG 330
+ ++ RE +PN+D + G
Sbjct: 297 IGQLMWREFYYTVAAAEPNFDRMLG 321
>gi|229514567|ref|ZP_04404028.1| deoxyribodipyrimidine photolyase [Vibrio cholerae TMA 21]
gi|229348547|gb|EEO13505.1| deoxyribodipyrimidine photolyase [Vibrio cholerae TMA 21]
Length = 469
Score = 39.3 bits (90), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 46/104 (44%), Gaps = 4/104 (3%)
Query: 236 AAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCA--LEARKA 293
A E ++ F +R+++Y R+ P + S LSPYL G +SA++C L +
Sbjct: 204 ADFETVRAQLRDFCRERVQDYHQARDFPAQ-EGTSSLSPYLAIGVLSARQCVARLYHESS 262
Query: 294 RKLCPEAIDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARK 337
E +L ELI RE + +PN + EW +
Sbjct: 263 MGELSEGAQVWLSELIW-REFYQHLVAIEPNLSKSRDFVEWGAR 305
>gi|414070032|ref|ZP_11406021.1| deoxyribodipyrimidine photo-lyase [Pseudoalteromonas sp. Bsw20308]
gi|410807544|gb|EKS13521.1| deoxyribodipyrimidine photo-lyase [Pseudoalteromonas sp. Bsw20308]
Length = 464
Score = 39.3 bits (90), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 56/273 (20%), Positives = 110/273 (40%), Gaps = 34/273 (12%)
Query: 31 VVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQ 90
++W RD R+ N ALI A++ K+ + V+ + Q A Q+ + R + LQ
Sbjct: 3 TLFWFRRDLRLFSNEALIQALNNGAKHAI-FFVSEKQWQQHQTAPI-QIDLLKRRVTYLQ 60
Query: 91 RNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRC---KDKICNRVS- 146
+ + + I + + P+F C + + +F +++ + N V+
Sbjct: 61 SQLAD-YGITLHIIEA------PSF---CDCTRELINFCKANDVKHVIANTEYELNEVNR 110
Query: 147 DSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLP-------EYLIDYPMLEQPIE 199
D +HE D + + L A +++ + N++ +L Y +
Sbjct: 111 DKAILHECDERTITFTLYEGD-LIAPAGSVKNQSNEMYKVFTPFKRAWLKQYQDTHFSLP 169
Query: 200 KWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLKNYPTD 259
+W T I++D + +L+ C E L D F+ +L +Y
Sbjct: 170 QWPLTSDPIEFDE--SDLLKNDG-------CSDKWPVDDETLSTVVDNFICDKLTSYDDQ 220
Query: 260 RNNPLKPRALSGLSPYLHFGQISAQRCALEARK 292
R+ P + SGLSPYL G +S ++ + ++
Sbjct: 221 RDIP-SVKGTSGLSPYLALGIVSTKQLLINIQQ 252
>gi|153827504|ref|ZP_01980171.1| deoxyribodipyrimidine photolyase, cyclobutane pyrimidine
dimer-specific [Vibrio cholerae MZO-2]
gi|149738567|gb|EDM52922.1| deoxyribodipyrimidine photolyase, cyclobutane pyrimidine
dimer-specific [Vibrio cholerae MZO-2]
Length = 469
Score = 39.3 bits (90), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 46/104 (44%), Gaps = 4/104 (3%)
Query: 236 AAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCA--LEARKA 293
A E ++ F +R+++Y R+ P + S LSPYL G +SA++C L +
Sbjct: 204 ADFETVRAQLRDFCRERVQDYHQARDFPAQ-EGTSSLSPYLAIGVLSARQCVARLYHESS 262
Query: 294 RKLCPEAIDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARK 337
E +L ELI RE + +PN + EW +
Sbjct: 263 MGELSEGAQVWLSELIW-REFYQHLVAIEPNLSKSRDFVEWGAR 305
>gi|254224596|ref|ZP_04918212.1| deoxyribodipyrimidine photolyase, cyclobutane pyrimidine
dimer-specific [Vibrio cholerae V51]
gi|125622659|gb|EAZ50977.1| deoxyribodipyrimidine photolyase, cyclobutane pyrimidine
dimer-specific [Vibrio cholerae V51]
Length = 469
Score = 39.3 bits (90), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 46/104 (44%), Gaps = 4/104 (3%)
Query: 236 AAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCA--LEARKA 293
A E ++ F +R+++Y R+ P + S LSPYL G +SA++C L +
Sbjct: 204 ADFETVRAQLRDFCRERVQDYHQARDFPAQ-EGTSSLSPYLAIGVLSARQCVARLYHESS 262
Query: 294 RKLCPEAIDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARK 337
E +L ELI RE + +PN + EW +
Sbjct: 263 MGELSEGAQVWLSELIW-REFYQHLVAIEPNLSKSRDFVEWGAR 305
>gi|397619713|gb|EJK65369.1| hypothetical protein THAOC_13774 [Thalassiosira oceanica]
Length = 673
Score = 38.9 bits (89), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 27/110 (24%), Positives = 47/110 (42%), Gaps = 15/110 (13%)
Query: 253 LKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARK---------------LC 297
+ Y +RN+P K + S +S YL+ G +S R E ++A+K
Sbjct: 372 MSRYGKERNDPRKVHSPSRMSAYLNLGVVSIFRLVWEVKRAQKQEQKGKSSSSHTKNRWN 431
Query: 298 PEAIDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKR 347
D + EE++ RE + F + +YD + W+ L +H + R
Sbjct: 432 KSGCDKYEEEIVKWREFSYAHAFSREDYDDVLSLPRWSMNCLDNHRNRSR 481
>gi|229526306|ref|ZP_04415710.1| deoxyribodipyrimidine photolyase [Vibrio cholerae bv. albensis
VL426]
gi|229336464|gb|EEO01482.1| deoxyribodipyrimidine photolyase [Vibrio cholerae bv. albensis
VL426]
Length = 469
Score = 38.9 bits (89), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 46/104 (44%), Gaps = 4/104 (3%)
Query: 236 AAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCA--LEARKA 293
A E ++ F +R+++Y R+ P + S LSPYL G +SA++C L +
Sbjct: 204 ADFETVRAQLRDFCRERVQDYHQARDFPAQ-EGTSSLSPYLAIGVLSARQCVARLYHESS 262
Query: 294 RKLCPEAIDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARK 337
E +L ELI RE + +PN + EW +
Sbjct: 263 MGELSEGAQVWLSELIW-REFYQHLVAIEPNLSKSRDFVEWGAR 305
>gi|254284783|ref|ZP_04959750.1| deoxyribodipyrimidine photolyase, cyclobutane pyrimidine
dimer-specific [Vibrio cholerae AM-19226]
gi|417818812|ref|ZP_12465432.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HE39]
gi|421349744|ref|ZP_15800113.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HE-25]
gi|423938868|ref|ZP_17732353.1| DNA photolyase family protein [Vibrio cholerae HE-40]
gi|423968686|ref|ZP_17735903.1| DNA photolyase family protein [Vibrio cholerae HE-46]
gi|150425568|gb|EDN17344.1| deoxyribodipyrimidine photolyase, cyclobutane pyrimidine
dimer-specific [Vibrio cholerae AM-19226]
gi|340043526|gb|EGR04484.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HE39]
gi|395956361|gb|EJH66955.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HE-25]
gi|408664649|gb|EKL35479.1| DNA photolyase family protein [Vibrio cholerae HE-40]
gi|408667250|gb|EKL38000.1| DNA photolyase family protein [Vibrio cholerae HE-46]
Length = 469
Score = 38.9 bits (89), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 46/104 (44%), Gaps = 4/104 (3%)
Query: 236 AAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCA--LEARKA 293
A E ++ F +R+++Y R+ P + S LSPYL G +SA++C L +
Sbjct: 204 ADFETVRAQLRDFCRERVQDYHQARDFPAQ-EGTSSLSPYLAIGVLSARQCVARLYHESS 262
Query: 294 RKLCPEAIDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARK 337
E +L ELI RE + +PN + EW +
Sbjct: 263 MGELSEGAQVWLSELIW-REFYQHLVAIEPNLSKSRDFVEWGAR 305
>gi|350532818|ref|ZP_08911759.1| deoxyribodipyrimidine photolyase [Vibrio rotiferianus DAT722]
Length = 471
Score = 38.9 bits (89), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 49/117 (41%), Gaps = 13/117 (11%)
Query: 248 FLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCA--LEARKARKLCPEAIDTFL 305
F +R Y +R+ P S LSPYL G +S+++C L A E T+L
Sbjct: 218 FARERSDAYKAERDRP-AADGTSQLSPYLAIGALSSRQCIARLYAESPHSELTEGKATWL 276
Query: 306 EELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTA 362
E I+ RE + ++P KG W DK E Y + FE+ +T
Sbjct: 277 SE-IIWREFYQHLLVFEPKLVKGKGFIPW---------EDKIEWSYDETAFERWKTG 323
>gi|451972713|ref|ZP_21925917.1| deoxyribodipyrimidine photolyase family [Vibrio alginolyticus
E0666]
gi|451931406|gb|EMD79096.1| deoxyribodipyrimidine photolyase family [Vibrio alginolyticus
E0666]
Length = 471
Score = 38.9 bits (89), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 60/133 (45%), Gaps = 17/133 (12%)
Query: 231 ESGED---AAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCA 287
ES ED + +VLK ++ F +R Y DR+ P S LSPYL G +S ++C
Sbjct: 199 ESSEDWFASTNDVLKQLRE-FARERSDAYKEDRDFP-AIDGTSQLSPYLAIGALSPRQCI 256
Query: 288 --LEARKARKLCPEAIDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASD 345
L A + E T+L E I+ RE + ++P KG +W D
Sbjct: 257 ARLYAENQQNDLTEGKATWLSE-IIWREFYQHLLVFEPKLVKGKGFIDW---------ED 306
Query: 346 KREHIYTKEQFEK 358
K + Y ++ FE+
Sbjct: 307 KIQWSYDEQAFER 319
>gi|91223275|ref|ZP_01258541.1| deoxyribodipyrimidine photolyase [Vibrio alginolyticus 12G01]
gi|91192088|gb|EAS78351.1| deoxyribodipyrimidine photolyase [Vibrio alginolyticus 12G01]
Length = 471
Score = 38.5 bits (88), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 63/137 (45%), Gaps = 17/137 (12%)
Query: 231 ESGED---AAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCA 287
ES ED + ++LK ++ F +R Y ++R+ P S LSPYL G +S ++C
Sbjct: 199 ESSEDWLASTNDILKQLRE-FARERSDAYQSERDFP-AIDGTSQLSPYLAIGALSPRQCI 256
Query: 288 --LEARKARKLCPEAIDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASD 345
L A + E T+L E I+ RE + ++P KG +W D
Sbjct: 257 ARLYAENQQNDLTEGKATWLSE-IIWREFYQHLLVFEPKLVKGKGFIDW---------ED 306
Query: 346 KREHIYTKEQFEKAQTA 362
K + Y ++ FE+ +T
Sbjct: 307 KIQWSYDEKAFERWKTG 323
>gi|269965348|ref|ZP_06179468.1| deoxyribodipyrimidine photolyase [Vibrio alginolyticus 40B]
gi|269829994|gb|EEZ84223.1| deoxyribodipyrimidine photolyase [Vibrio alginolyticus 40B]
Length = 471
Score = 38.5 bits (88), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 63/137 (45%), Gaps = 17/137 (12%)
Query: 231 ESGED---AAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCA 287
ES ED + ++LK ++ F +R Y ++R+ P S LSPYL G +S ++C
Sbjct: 199 ESSEDWLASTNDILKQLRE-FARERSDAYQSERDFP-AIDGTSQLSPYLAIGALSPRQCI 256
Query: 288 --LEARKARKLCPEAIDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASD 345
L A + E T+L E I+ RE + ++P KG +W D
Sbjct: 257 ARLYAENQQNDLTEGKATWLSE-IIWREFYQHLLVFEPKLVKGKGFIDW---------ED 306
Query: 346 KREHIYTKEQFEKAQTA 362
K + Y ++ FE+ +T
Sbjct: 307 KIQWSYDEKAFERWKTG 323
>gi|424590980|ref|ZP_18030413.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae CP1037(10)]
gi|408033486|gb|EKG70033.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae CP1037(10)]
Length = 469
Score = 38.5 bits (88), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 46/104 (44%), Gaps = 4/104 (3%)
Query: 236 AAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCA--LEARKA 293
A E ++ F +R+++Y R+ P + S LSPYL G +SA++C L +
Sbjct: 204 ADFETVRAQLREFCRERVQDYHQARDFPAQ-EGTSSLSPYLAIGVLSARQCVARLYHESS 262
Query: 294 RKLCPEAIDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARK 337
E +L ELI RE + +PN + EW +
Sbjct: 263 MGELSEGAQAWLSELIW-REFYQHLVAIEPNLSKSRDFVEWGAR 305
>gi|121730224|ref|ZP_01682610.1| deoxyribodipyrimidine photolyase, cyclobutane pyrimidine
dimer-specific [Vibrio cholerae V52]
gi|147672153|ref|YP_001214921.1| deoxyribodipyrimidine photolyase, cyclobutane pyrimidine
dimer-specific [Vibrio cholerae O395]
gi|227119239|ref|YP_002821134.1| deoxyribodipyrimidine photolyase [Vibrio cholerae O395]
gi|262168985|ref|ZP_06036679.1| deoxyribodipyrimidine photolyase [Vibrio cholerae RC27]
gi|121628028|gb|EAX60578.1| deoxyribodipyrimidine photolyase, cyclobutane pyrimidine
dimer-specific [Vibrio cholerae V52]
gi|146314536|gb|ABQ19076.1| deoxyribodipyrimidine photolyase, cyclobutane pyrimidine
dimer-specific [Vibrio cholerae O395]
gi|227014689|gb|ACP10898.1| deoxyribodipyrimidine photolyase [Vibrio cholerae O395]
gi|262022684|gb|EEY41391.1| deoxyribodipyrimidine photolyase [Vibrio cholerae RC27]
Length = 469
Score = 38.5 bits (88), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 46/104 (44%), Gaps = 4/104 (3%)
Query: 236 AAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCA--LEARKA 293
A E ++ F +R+++Y R+ P + S LSPYL G +SA++C L +
Sbjct: 204 ADFETVRAQLREFCRERVQDYHQARDFPAQ-EGTSSLSPYLAIGVLSARQCVARLYHESS 262
Query: 294 RKLCPEAIDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARK 337
E +L ELI RE + +PN + EW +
Sbjct: 263 MGELSEGAQAWLSELIW-REFYQHLVAIEPNLSKSRDFVEWGAR 305
>gi|407846250|gb|EKG02478.1| DNA photolyase, putative,cryptochrome, putative [Trypanosoma cruzi]
Length = 871
Score = 38.5 bits (88), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 47/113 (41%), Gaps = 13/113 (11%)
Query: 31 VVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLG---------- 80
+V + D RV DN+ L A +A +A + D A+ +G
Sbjct: 222 MVVFAANDMRVHDNYTLALAAVRAEAAGGLPVIAVAVIDYRTFAQPSAVGGYFRQSPMRA 281
Query: 81 -FMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGAS--LLVTDFSP 130
F L L L+ +EE + + G E+++P ECGA+ + T ++P
Sbjct: 282 RFFLESLAKLRAKLEEELNVPLLIRCGRPEEHVPRLAVECGATDVFMTTQYAP 334
>gi|406707087|ref|YP_006757439.1| FAD-binding protein, DNA photolyase family,DNA photolyase [alpha
proteobacterium HIMB59]
gi|406652863|gb|AFS48262.1| FAD-binding protein, DNA photolyase family,DNA photolyase [alpha
proteobacterium HIMB59]
Length = 447
Score = 38.5 bits (88), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 54/114 (47%), Gaps = 13/114 (11%)
Query: 233 GEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARK 292
GE AA + L +L + Y R+ P + S LSPYL FG+IS + L K
Sbjct: 182 GEKAAQDQL----SRYLKTDIDIYKDARDRPDLDQT-SKLSPYLRFGEISPRTVVLNILK 236
Query: 293 ARKLCPEAIDTFLEELIVRRELADNFCFYQPNYDSLK-----GAWEWARKSLKD 341
++ L + T+L E I RE + + +Y N S+ + W RKS+KD
Sbjct: 237 SKNLSTSVL-TYLSE-IGWREFSYSLLYYSKNLSSVPINLKFQNFPW-RKSVKD 287
>gi|195995781|ref|XP_002107759.1| hypothetical protein TRIADDRAFT_18352 [Trichoplax adhaerens]
gi|190588535|gb|EDV28557.1| hypothetical protein TRIADDRAFT_18352 [Trichoplax adhaerens]
Length = 503
Score = 38.1 bits (87), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 74/327 (22%), Positives = 128/327 (39%), Gaps = 65/327 (19%)
Query: 31 VVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQ-------LGFML 83
+ W+ +D R+ DN AL HA + + +FD+ K R L L
Sbjct: 9 TLVWLRQDLRLIDNPALFHAAKRGQ------LITVYIFDEDCSGKRRTGQACLWWLYHSL 62
Query: 84 RGLR--LLQRNI-------EETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREI 134
+ LR L Q NI ++ F IL L D I + C + P
Sbjct: 63 KSLRNQLSQWNIPLIVKSGKDAFTILKELLDSYNADAI--YWNRC--------YEPFEYN 112
Query: 135 RRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEY---LIDY 191
R C + ++ ++VT+ + W + KT +G ++ + +
Sbjct: 113 RDCSIEEKLKM-ENVTVETYQDRVLFEPW--------TIKTAKGGPVQIYVHFWNQCLSL 163
Query: 192 PMLEQPIEK-----WTGTRQSIDWDSIIAAVLRKGAEVP---EIGWCESGEDAAMEVLKG 243
P +P +K TG + D ++ + + ++P + W GE+ A+ LK
Sbjct: 164 PQPRKPYDKPKFKNQTGCQSKCDEPAVWQRLAKLSQDMPMKLQDFW-HPGEEQAISKLKS 222
Query: 244 SKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQIS------AQRCALEARKARKLC 297
F+ L Y +++ L+ S LSPYLHFG+IS + R A + + +
Sbjct: 223 ----FIKNSLNAY-AEKSQCLRLNTTSNLSPYLHFGEISPFTVWHSVRHASSSAEPPAVK 277
Query: 298 PEAIDTFLEELIVRRELADNFCFYQPN 324
E++ +L L RE + F+ P+
Sbjct: 278 SESLKQYLRSL-GWREYTCHLLFHYPD 303
>gi|71896697|ref|NP_001026319.1| methyltransferase-like protein 14 [Gallus gallus]
gi|82081940|sp|Q5ZK35.1|MTL14_CHICK RecName: Full=Methyltransferase-like protein 14
gi|53132487|emb|CAG31908.1| hypothetical protein RCJMB04_13h15 [Gallus gallus]
Length = 459
Score = 38.1 bits (87), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 40/173 (23%), Positives = 74/173 (42%), Gaps = 46/173 (26%)
Query: 114 NFVRECGASLLVTDFSPLREIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSA 173
NF+R+ G + ++ LRE+ R KD++ + N P+++ ++ +
Sbjct: 132 NFIRDVGLADRFEEYPKLRELIRLKDEL------------ISKSNTPPMYLQADLEAFDI 179
Query: 174 KTLRGKINKLLPEYLIDYPMLEQPIEKW------TGTRQSIDWDSIIAAVLRKGAEVPEI 227
+ L+ K + +L LE P+E++ T + WD I+ E+ EI
Sbjct: 180 RELKSKFDVIL---------LEPPLEEYYRETGITANEKCWTWDDIMK------LEIEEI 224
Query: 228 G--------WCESGEDAAMEVLKGSKDGFLTKRLKN---YPTDRNNPLKPRAL 269
WC SGE + + K G+ +R ++ T++NNP K + L
Sbjct: 225 AAPRSFVFLWCGSGEGLDLGRVCLRKWGY--RRCEDICWIKTNKNNPGKTKTL 275
>gi|326918994|ref|XP_003205769.1| PREDICTED: methyltransferase-like protein 14-like [Meleagris
gallopavo]
Length = 490
Score = 37.7 bits (86), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 40/173 (23%), Positives = 74/173 (42%), Gaps = 46/173 (26%)
Query: 114 NFVRECGASLLVTDFSPLREIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSA 173
NF+R+ G + ++ LRE+ R KD++ + N P+++ ++ +
Sbjct: 163 NFIRDVGLADRFEEYPKLRELIRLKDEL------------ISKSNTPPMYLQADLEAFDI 210
Query: 174 KTLRGKINKLLPEYLIDYPMLEQPIEKW------TGTRQSIDWDSIIAAVLRKGAEVPEI 227
+ L+ K + +L LE P+E++ T + WD I+ E+ EI
Sbjct: 211 RELKSKFDVIL---------LEPPLEEYYRETGITANEKCWTWDDIMK------LEIEEI 255
Query: 228 G--------WCESGEDAAMEVLKGSKDGFLTKRLKN---YPTDRNNPLKPRAL 269
WC SGE + + K G+ +R ++ T++NNP K + L
Sbjct: 256 AAPRSFVFLWCGSGEGLDLGRVCLRKWGY--RRCEDICWIKTNKNNPGKTKTL 306
>gi|224049178|ref|XP_002186611.1| PREDICTED: methyltransferase-like protein 14 [Taeniopygia guttata]
Length = 459
Score = 37.7 bits (86), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 40/173 (23%), Positives = 74/173 (42%), Gaps = 46/173 (26%)
Query: 114 NFVRECGASLLVTDFSPLREIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSA 173
NF+R+ G + ++ LRE+ R KD++ + N P+++ ++ +
Sbjct: 132 NFIRDVGLADRFEEYPKLRELIRLKDEL------------ISKSNTPPMYLQADLEAFDI 179
Query: 174 KTLRGKINKLLPEYLIDYPMLEQPIEKW------TGTRQSIDWDSIIAAVLRKGAEVPEI 227
+ L+ K + +L LE P+E++ T + WD I+ E+ EI
Sbjct: 180 RELKSKFDVIL---------LEPPLEEYYRETGITANEKCWTWDDIMK------LEIEEI 224
Query: 228 G--------WCESGEDAAMEVLKGSKDGFLTKRLKN---YPTDRNNPLKPRAL 269
WC SGE + + K G+ +R ++ T++NNP K + L
Sbjct: 225 AAPRSFVFLWCGSGEGLDLGRVCLRKWGY--RRCEDICWIKTNKNNPGKTKTL 275
>gi|195119085|ref|XP_002004062.1| GI19664 [Drosophila mojavensis]
gi|193914637|gb|EDW13504.1| GI19664 [Drosophila mojavensis]
Length = 532
Score = 37.7 bits (86), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 77/322 (23%), Positives = 129/322 (40%), Gaps = 22/322 (6%)
Query: 27 KRGPVVYWMFRDQRVRDNWALIHAVDQA----NKNNV-PVAVAFNLFDQFLGAKARQLGF 81
+R +++W + RV DN ALI ++A +K +V P+ V ++ A + F
Sbjct: 4 ERRTLIHWFRKGLRVHDNPALIQIFNKAGASPDKFSVRPIFVLDPGILDWMKVGANRWRF 63
Query: 82 MLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLV--TDFSPLREIRRCKD 139
+ + L L +N++E L+ + +G+ D PN LL TD P ++R K
Sbjct: 64 LQQSLLDLDKNLKELNSRLY-IVRGKPVDIFPNLFDRWNVELLTFETDIEPY-AVKRDKA 121
Query: 140 KICNRVSDSVTIHEVDAHNVV-PVWVASEKLEYSAKTLR---GKINKLLPEYLIDYPML- 194
+ V + +H + P V ++ + T + + KL ++D P
Sbjct: 122 VQDIAAAHGVKVDTHCSHTIYNPEIVIAKNFGRAPITYQKFLSVVEKLKLPKVLDKPQRL 181
Query: 195 ---EQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGS-KDGFLT 250
QPI QS ++ L K + I GE A+ L S D
Sbjct: 182 PNGVQPIADELEMGQSDVYECPTLDQLVKRPQELGINKFPGGEREALRRLDTSLSDEHWV 241
Query: 251 KRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAID--TFLEEL 308
+ P N L+P + + LSPYL FG +SA+ + K P+ L
Sbjct: 242 ASFEK-PNTAPNSLEP-STTVLSPYLKFGCLSARLVHQRLHEILKRHPKHSKPPVSLVGQ 299
Query: 309 IVRRELADNFCFYQPNYDSLKG 330
++ RE +PN+D + G
Sbjct: 300 LLWREFYYTAAAVEPNFDRMLG 321
>gi|254418176|ref|ZP_05031900.1| deoxyribodipyrimidine photolyase family [Brevundimonas sp. BAL3]
gi|196184353|gb|EDX79329.1| deoxyribodipyrimidine photolyase family [Brevundimonas sp. BAL3]
Length = 488
Score = 37.7 bits (86), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 30/52 (57%), Gaps = 8/52 (15%)
Query: 231 ESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQIS 282
E+G DAA+ FL + LK Y R++P P S LSP+LH+G+IS
Sbjct: 209 EAGADAALS-------DFLARGLKTYAKGRDHPALP-TTSRLSPHLHWGEIS 252
>gi|89094232|ref|ZP_01167174.1| Deoxyribodipyrimidine photolyase [Neptuniibacter caesariensis]
gi|89081487|gb|EAR60717.1| Deoxyribodipyrimidine photolyase [Neptuniibacter caesariensis]
Length = 468
Score = 37.7 bits (86), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 47/81 (58%), Gaps = 7/81 (8%)
Query: 232 SGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEAR 291
+G +AA ++L+ ++ +++ +Y R+ P +P S LSPYL G +S ++C L A
Sbjct: 208 AGTEAAHKLLQH----YVLEKVADYKQSRDFPAEP-GTSSLSPYLSVGVLSTRQC-LAAM 261
Query: 292 KARKLCPEAIDT-FLEELIVR 311
+A PE D+ ++ ELI R
Sbjct: 262 QAYFDQPEWFDSQWVTELIWR 282
>gi|449271137|gb|EMC81685.1| Methyltransferase-like protein 14, partial [Columba livia]
Length = 438
Score = 37.7 bits (86), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 40/173 (23%), Positives = 74/173 (42%), Gaps = 46/173 (26%)
Query: 114 NFVRECGASLLVTDFSPLREIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSA 173
NF+R+ G + ++ LRE+ R KD++ + N P+++ ++ +
Sbjct: 111 NFIRDVGLADRFEEYPKLRELIRLKDEL------------ISKSNTPPMYLQADLEAFDI 158
Query: 174 KTLRGKINKLLPEYLIDYPMLEQPIEKW------TGTRQSIDWDSIIAAVLRKGAEVPEI 227
+ L+ K + +L LE P+E++ T + WD I+ E+ EI
Sbjct: 159 RELKSKFDVIL---------LEPPLEEYYRETGITANEKCWTWDDIMK------LEIEEI 203
Query: 228 G--------WCESGEDAAMEVLKGSKDGFLTKRLKN---YPTDRNNPLKPRAL 269
WC SGE + + K G+ +R ++ T++NNP K + L
Sbjct: 204 AAPRSFVFLWCGSGEGLDLGRVCLRKWGY--RRCEDICWIKTNKNNPGKTKTL 254
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.321 0.137 0.420
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,947,236,709
Number of Sequences: 23463169
Number of extensions: 246280110
Number of successful extensions: 519170
Number of sequences better than 100.0: 776
Number of HSP's better than 100.0 without gapping: 373
Number of HSP's successfully gapped in prelim test: 403
Number of HSP's that attempted gapping in prelim test: 517402
Number of HSP's gapped (non-prelim): 964
length of query: 375
length of database: 8,064,228,071
effective HSP length: 144
effective length of query: 231
effective length of database: 8,980,499,031
effective search space: 2074495276161
effective search space used: 2074495276161
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 78 (34.7 bits)