BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017242
(375 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3UMV|A Chain A, Eukaryotic Class Ii Cpd Photolyase Structure Reveals A
Basis For Improved Uv-Tolerance In Plants
pdb|3UMV|B Chain B, Eukaryotic Class Ii Cpd Photolyase Structure Reveals A
Basis For Improved Uv-Tolerance In Plants
Length = 506
Score = 392 bits (1007), Expect = e-109, Method: Compositional matrix adjust.
Identities = 213/376 (56%), Positives = 261/376 (69%), Gaps = 16/376 (4%)
Query: 3 SLTPPSTA--------VQPGRIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQA 54
S++PP TA P R+RV+ G VVYWM RDQR+ DNWAL+HA A
Sbjct: 5 SVSPPRTAPGPANPSPAHPSRVRVIHPGGGKPGGP-VVYWMLRDQRLADNWALLHAAGLA 63
Query: 55 NKNNVPVAVAFNLFDQ--FLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNI 112
+ P+AVAF LF + L A+ RQLGF+LRGLR L + F G AE I
Sbjct: 64 AASASPLAVAFALFPRPFLLSARRRQLGFLLRGLRRLAADAAARHLPFFLFTGGPAE--I 121
Query: 113 PNFVRECGASLLVTDFSPLREIRRCKDKICN---RVSDSVTIHEVDAHNVVPVWVASEKL 169
P V+ GAS LV DFSPLR +R D + R + V +H+VDAHNVVPVW AS K+
Sbjct: 122 PALVQRLGASTLVADFSPLRPVREALDAVVGDLRREAPGVAVHQVDAHNVVPVWTASAKM 181
Query: 170 EYSAKTLRGKINKLLPEYLIDYPMLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGW 229
EYSAKT RGK++K++ EYL+++P L + + +DWD++IA V + VPEI W
Sbjct: 182 EYSAKTFRGKVSKVMDEYLVEFPELPAVVPWDREQPEGVDWDALIARVCSEAENVPEIDW 241
Query: 230 CESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALE 289
CE GE+AA+E L GSKDGFLTKR+K+Y TDRN+P KPRALSGLSPYLHFG ISAQRCALE
Sbjct: 242 CEPGEEAAIEALLGSKDGFLTKRIKSYETDRNDPTKPRALSGLSPYLHFGHISAQRCALE 301
Query: 290 ARKARKLCPEAIDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREH 349
A+K R L P+++D FLEEL+VRRELADNFC+YQP YDSL GAWEWARK+L DHA+DKREH
Sbjct: 302 AKKCRHLSPKSVDAFLEELVVRRELADNFCYYQPQYDSLSGAWEWARKTLMDHAADKREH 361
Query: 350 IYTKEQFEKAQTADPV 365
IYT+EQ E A+T DP+
Sbjct: 362 IYTREQLENAKTHDPL 377
>pdb|2XRY|A Chain A, X-Ray Structure Of Archaeal Class Ii Cpd Photolyase From
Methanosarcina Mazei
pdb|2XRZ|A Chain A, X-Ray Structure Of Archaeal Class Ii Cpd Photolyase From
Methanosarcina Mazei In Complex With Intact Cpd-Lesion
pdb|2XRZ|B Chain B, X-Ray Structure Of Archaeal Class Ii Cpd Photolyase From
Methanosarcina Mazei In Complex With Intact Cpd-Lesion
Length = 482
Score = 251 bits (642), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 155/380 (40%), Positives = 213/380 (56%), Gaps = 32/380 (8%)
Query: 3 SLTPPSTAVQPGRIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVA 62
L P + + P RIR LK G + GPVVYWM RDQR DNWAL+ + A + NVPV
Sbjct: 13 GLVPRGSHMNPKRIRALKSGK--QGDGPVVYWMSRDQRAEDNWALLFSRAIAKEANVPVV 70
Query: 63 VAFNLFDQFLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGAS 122
V F L D+FL A RQ FML+GL+ L+ ++ +I F +G+ + I FV++ A
Sbjct: 71 VVFCLTDEFLEAGIRQYEFMLKGLQELEVSLSRK-KIPSFFLRGDPGEKISRFVKDYNAG 129
Query: 123 LLVTDFSPLREIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKI-- 180
LVTDFSPLR + +K+ + +S + EVDAHNVVP W AS+K EY+A T R K+
Sbjct: 130 TLVTDFSPLRIKNQWIEKVISGIS--IPFFEVDAHNVVPCWEASQKHEYAAHTFRPKLYA 187
Query: 181 --------------NKLLPEYLIDYPMLEQPIEKW-TGTRQSIDWDSIIAAVLRKGAEVP 225
N + PE M+E + TG + + A+L+ +
Sbjct: 188 LLPEFLEEFPELEPNSVTPELSAGAGMVETLSDVLETGVKALLP----ERALLKNKDPLF 243
Query: 226 EIGWCESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQR 285
E E GE AA +V+ + F+ RL +Y RN+P K LS LSPYLHFGQIS+QR
Sbjct: 244 EPWHFEPGEKAAKKVM----ESFIADRLDSYGALRNDPTK-NMLSNLSPYLHFGQISSQR 298
Query: 286 CALEARKARKLCPEAIDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASD 345
LE KA P + FL+E+++ +E++DNFC+Y P YD + WA++SL H +D
Sbjct: 299 VVLEVEKAES-NPGSKKAFLDEILIWKEISDNFCYYNPGYDGFESFPSWAKESLNAHRND 357
Query: 346 KREHIYTKEQFEKAQTADPV 365
R HIYT E+FE +T DP+
Sbjct: 358 VRSHIYTLEEFEAGKTHDPL 377
>pdb|3CVX|A Chain A, Drosophila Melanogaster (6-4) Photolyase H369m Mutant
Bound To Ds Dna With A T-T (6-4) Photolesion
Length = 543
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 79/351 (22%), Positives = 138/351 (39%), Gaps = 28/351 (7%)
Query: 1 MASLTPPSTAVQPGRIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNV- 59
MAS + P K G +D +R +V+W + R+ DN AL H AN
Sbjct: 1 MASWSHPQFEKGASTSLYKKAGLMDSQRSTLVHWFRKGLRLHDNPALSHIFTAANAAPGR 60
Query: 60 ----PVAVAFNLFDQFLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNF 115
P+ + ++ A + F+ + L L + + L F+ +G+ + P
Sbjct: 61 YFVRPIFILDPGILDWMQVGANRWRFLQQTLEDLDNQLRKLNSRL-FVVRGKPAEVFPRI 119
Query: 116 VRECGASLLV--TDFSPLREIRRCKDKICNRVSDSVTIHEVDAHNVV-PVWVASEKLEYS 172
+ +L TD P R + + ++ V + +H + P V ++ L +
Sbjct: 120 FKSWRVEMLTFETDIEPYSVTRDAAVQKLAK-AEGVRVETHCSHTIYNPELVIAKNLGKA 178
Query: 173 AKTLRG--------KINKLL--PEYLIDYPMLEQPIEKWTGTRQSIDWDSIIAAVLRKGA 222
T + K+ K+L PE L + P P + + S +D L K
Sbjct: 179 PITYQKFLGIVEQLKVPKVLGVPEKLKNMPT---PPKDEVEQKDSAAYDCPTMKQLVKRP 235
Query: 223 EVPEIGWCESGEDAAMEVLKGS-KDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQI 281
E GE A+ ++ S KD R + P N L+P + + LSPYL FG +
Sbjct: 236 EELGPNKFPGGETEALRRMEESLKDEIWVARFEK-PNTAPNSLEP-STTVLSPYLKFGCL 293
Query: 282 SAQRCALEARKARKLCPEAIDTFLEEL--IVRRELADNFCFYQPNYDSLKG 330
SA+ + ++ K P+ + + ++ RE +PN+D + G
Sbjct: 294 SARLFNQKLKEIIKRQPKHSQPPVSLIGQLMWREFYYTVAAAEPNFDRMLG 344
>pdb|3CVW|A Chain A, Drosophila Melanogaster (6-4) Photolyase H365n Mutant
Bound To Ds Dna With A T-T (6-4) Photolesion And
Cofactor F0
Length = 543
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 79/351 (22%), Positives = 138/351 (39%), Gaps = 28/351 (7%)
Query: 1 MASLTPPSTAVQPGRIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNV- 59
MAS + P K G +D +R +V+W + R+ DN AL H AN
Sbjct: 1 MASWSHPQFEKGASTSLYKKAGLMDSQRSTLVHWFRKGLRLHDNPALSHIFTAANAAPGR 60
Query: 60 ----PVAVAFNLFDQFLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNF 115
P+ + ++ A + F+ + L L + + L F+ +G+ + P
Sbjct: 61 YFVRPIFILDPGILDWMQVGANRWRFLQQTLEDLDNQLRKLNSRL-FVVRGKPAEVFPRI 119
Query: 116 VRECGASLLV--TDFSPLREIRRCKDKICNRVSDSVTIHEVDAHNVV-PVWVASEKLEYS 172
+ +L TD P R + + ++ V + +H + P V ++ L +
Sbjct: 120 FKSWRVEMLTFETDIEPYSVTRDAAVQKLAK-AEGVRVETHCSHTIYNPELVIAKNLGKA 178
Query: 173 AKTLRG--------KINKLL--PEYLIDYPMLEQPIEKWTGTRQSIDWDSIIAAVLRKGA 222
T + K+ K+L PE L + P P + + S +D L K
Sbjct: 179 PITYQKFLGIVEQLKVPKVLGVPEKLKNMPT---PPKDEVEQKDSAAYDCPTMKQLVKRP 235
Query: 223 EVPEIGWCESGEDAAMEVLKGS-KDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQI 281
E GE A+ ++ S KD R + P N L+P + + LSPYL FG +
Sbjct: 236 EELGPNKFPGGETEALRRMEESLKDEIWVARFEK-PNTAPNSLEP-STTVLSPYLKFGCL 293
Query: 282 SAQRCALEARKARKLCPEAIDTFLEEL--IVRRELADNFCFYQPNYDSLKG 330
SA+ + ++ K P+ + + ++ RE +PN+D + G
Sbjct: 294 SARLFNQKLKEIIKRQPKHSQPPVSLIGQLMWREFYYTVAAAEPNFDRMLG 344
>pdb|3CVU|A Chain A, Drosophila Melanogaster (6-4) Photolyase Bound To Ds Dna
With A T-T (6-4) Photolesion
pdb|3CVY|A Chain A, Drosophila Melanogaster (6-4) Photolyase Bound To Repaired
Ds Dna
pdb|2WB2|A Chain A, Drosophila Melanogaster (6-4) Photolyase Bound To Double
Stranded Dna Containing A T(6-4)c Photolesion
pdb|3CVV|A Chain A, Drosophila Melanogaster (6-4) Photolyase Bound To Ds Dna
With A T-T (6-4) Photolesion And F0 Cofactor
pdb|2WQ6|A Chain A, Structure Of The 6-4 Photolyase Of D. Melanogaster In
Complex With The Non-Natural N4-Methyl T(Dewar)c Lesion
pdb|2WQ7|A Chain A, Structure Of The 6-4 Photolyase Of D. Melanogaster In
Complex With The Non-Natural N4-Methyl T(6-4)c Lesion
Length = 543
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 79/351 (22%), Positives = 138/351 (39%), Gaps = 28/351 (7%)
Query: 1 MASLTPPSTAVQPGRIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNV- 59
MAS + P K G +D +R +V+W + R+ DN AL H AN
Sbjct: 1 MASWSHPQFEKGASTSLYKKAGLMDSQRSTLVHWFRKGLRLHDNPALSHIFTAANAAPGR 60
Query: 60 ----PVAVAFNLFDQFLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNF 115
P+ + ++ A + F+ + L L + + L F+ +G+ + P
Sbjct: 61 YFVRPIFILDPGILDWMQVGANRWRFLQQTLEDLDNQLRKLNSRL-FVVRGKPAEVFPRI 119
Query: 116 VRECGASLLV--TDFSPLREIRRCKDKICNRVSDSVTIHEVDAHNVV-PVWVASEKLEYS 172
+ +L TD P R + + ++ V + +H + P V ++ L +
Sbjct: 120 FKSWRVEMLTFETDIEPYSVTRDAAVQKLAK-AEGVRVETHCSHTIYNPELVIAKNLGKA 178
Query: 173 AKTLRG--------KINKLL--PEYLIDYPMLEQPIEKWTGTRQSIDWDSIIAAVLRKGA 222
T + K+ K+L PE L + P P + + S +D L K
Sbjct: 179 PITYQKFLGIVEQLKVPKVLGVPEKLKNMPT---PPKDEVEQKDSAAYDCPTMKQLVKRP 235
Query: 223 EVPEIGWCESGEDAAMEVLKGS-KDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQI 281
E GE A+ ++ S KD R + P N L+P + + LSPYL FG +
Sbjct: 236 EELGPNKFPGGETEALRRMEESLKDEIWVARFEK-PNTAPNSLEP-STTVLSPYLKFGCL 293
Query: 282 SAQRCALEARKARKLCPEAIDTFLEEL--IVRRELADNFCFYQPNYDSLKG 330
SA+ + ++ K P+ + + ++ RE +PN+D + G
Sbjct: 294 SARLFNQKLKEIIKRQPKHSQPPVSLIGQLMWREFYYTVAAAEPNFDRMLG 344
>pdb|1TEZ|A Chain A, Complex Between Dna And The Dna Photolyase From Anacystis
Nidulans
pdb|1TEZ|B Chain B, Complex Between Dna And The Dna Photolyase From Anacystis
Nidulans
pdb|1TEZ|C Chain C, Complex Between Dna And The Dna Photolyase From Anacystis
Nidulans
pdb|1TEZ|D Chain D, Complex Between Dna And The Dna Photolyase From Anacystis
Nidulans
Length = 474
Score = 35.0 bits (79), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 86/382 (22%), Positives = 143/382 (37%), Gaps = 96/382 (25%)
Query: 29 GPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLG----AKARQLGFMLR 84
P+++W RD R+ DN L A Q+ + + F L Q L A AR + ++
Sbjct: 2 APILFWHRRDLRLSDNIGLAAARAQSAQ----LIGLFCLDPQILQSADMAPAR-VAYLQG 56
Query: 85 GLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLV--TDFSP------------ 130
L+ LQ+ ++ L L QG+ + IP ++ A + D P
Sbjct: 57 CLQELQQRYQQAGSRLLLL-QGDPQHLIPQLAQQLQAEAVYWNQDIEPYGRDRDGQVAAA 115
Query: 131 -----LREIR------RCKDKICNRVSDSVTIHEVDAHN------VVPVWVASEKLEYSA 173
+R ++ D+I + + +++ N PV +E ++ S
Sbjct: 116 LKTAGIRAVQLWDQLLHSPDQILSGSGNPYSVYGPFWKNWQAQPKPTPVATPTELVDLSP 175
Query: 174 KTLRGKINKLLPEYLIDYPMLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESG 233
+ L + P L + P L+Q DWD E G
Sbjct: 176 EQL----TAIAPLLLSELPTLKQ---------LGFDWDGGFP--------------VEPG 208
Query: 234 EDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKA 293
E AA+ L+ F + + +Y RN P + SGLSP L FG I ++ A A
Sbjct: 209 ETAAIARLQE----FCDRAIADYDPQRNFPAE-AGTSGLSPALKFGAIGIRQAWQAASAA 263
Query: 294 RKL-----CPEAIDTFLEELIVRRELADNFCFYQPN-----YDSLKGAWEWARKSLKDHA 343
L +I + +EL RE + ++ P+ Y SL + W
Sbjct: 264 HALSRSDEARNSIRVWQQEL-AWREFYQHALYHFPSLADGPYRSLWQQFPW--------- 313
Query: 344 SDKREHIYTKEQFEKAQTADPV 365
+ RE ++T + +AQT P+
Sbjct: 314 -ENREALFTA--WTQAQTGYPI 332
>pdb|1OWL|A Chain A, Structure Of Apophotolyase From Anacystis Nidulans
pdb|1OWM|A Chain A, Data1:dna Photolyase RECEIVED X-Rays Dose 1.2 Exp15
PhotonsMM2
pdb|1OWN|A Chain A, Data3:dna Photolyase RECEIVED X-Rays Dose 4.8 Exp15
PhotonsMM2
pdb|1OWO|A Chain A, Data4:photoreduced Dna Photolyase RECEIVED X-Rays Dose
1.2 Exp15 PhotonsMM2
pdb|1OWP|A Chain A, Data6:photoreduced Dna Pholyase RECEIVED X-Rays Dose 4.8
Exp15 PhotonsMM2
pdb|1QNF|A Chain A, Structure Of Photolyase
Length = 484
Score = 35.0 bits (79), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 86/382 (22%), Positives = 143/382 (37%), Gaps = 96/382 (25%)
Query: 29 GPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLG----AKARQLGFMLR 84
P+++W RD R+ DN L A Q+ + + F L Q L A AR + ++
Sbjct: 3 APILFWHRRDLRLSDNIGLAAARAQSAQ----LIGLFCLDPQILQSADMAPAR-VAYLQG 57
Query: 85 GLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLV--TDFSP------------ 130
L+ LQ+ ++ L L QG+ + IP ++ A + D P
Sbjct: 58 CLQELQQRYQQAGSRLLLL-QGDPQHLIPQLAQQLQAEAVYWNQDIEPYGRDRDGQVAAA 116
Query: 131 -----LREIR------RCKDKICNRVSDSVTIHEVDAHN------VVPVWVASEKLEYSA 173
+R ++ D+I + + +++ N PV +E ++ S
Sbjct: 117 LKTAGIRAVQLWDQLLHSPDQILSGSGNPYSVYGPFWKNWQAQPKPTPVATPTELVDLSP 176
Query: 174 KTLRGKINKLLPEYLIDYPMLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESG 233
+ L + P L + P L+Q DWD E G
Sbjct: 177 EQL----TAIAPLLLSELPTLKQ---------LGFDWDGGFP--------------VEPG 209
Query: 234 EDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKA 293
E AA+ L+ F + + +Y RN P + SGLSP L FG I ++ A A
Sbjct: 210 ETAAIARLQE----FCDRAIADYDPQRNFPAE-AGTSGLSPALKFGAIGIRQAWQAASAA 264
Query: 294 RKL-----CPEAIDTFLEELIVRRELADNFCFYQPN-----YDSLKGAWEWARKSLKDHA 343
L +I + +EL RE + ++ P+ Y SL + W
Sbjct: 265 HALSRSDEARNSIRVWQQEL-AWREFYQHALYHFPSLADGPYRSLWQQFPW--------- 314
Query: 344 SDKREHIYTKEQFEKAQTADPV 365
+ RE ++T + +AQT P+
Sbjct: 315 -ENREALFTA--WTQAQTGYPI 333
>pdb|3FY4|A Chain A, (6-4) Photolyase Crystal Structure
pdb|3FY4|B Chain B, (6-4) Photolyase Crystal Structure
pdb|3FY4|C Chain C, (6-4) Photolyase Crystal Structure
Length = 537
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 41/84 (48%), Gaps = 8/84 (9%)
Query: 253 LKNYPTDRNNP---LKPRALSGLSPYLHFGQISAQ---RCALEARKARKLCPEAIDTFLE 306
+ N+ + +P LKP A + +SPYL FG +S++ +C K K + L
Sbjct: 239 VANFEKPKGDPSAFLKP-ATTVMSPYLKFGCLSSRYFYQCLQNIYKDVKKHTSPPVSLLG 297
Query: 307 ELIVRRELADNFCFYQPNYDSLKG 330
+L+ RE F PN+D +KG
Sbjct: 298 QLLW-REFFYTTAFGTPNFDKMKG 320
>pdb|1RU3|A Chain A, Crystal Structure Of The Monomeric Acetyl-Coa Synthase
From Carboxydothermus Hydrogenoformans
Length = 732
Score = 29.6 bits (65), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 27/59 (45%)
Query: 276 LHFGQISAQRCALEARKARKLCPEAIDTFLEELIVRRELADNFCFYQPNYDSLKGAWEW 334
L +I+ ++ A + R+L EA+DT+ L+ + + C P L GA W
Sbjct: 478 LELREIARKKYAERDARLRELSDEAVDTYYSCLLCQSFAPTHVCIVSPERVGLCGAISW 536
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.420
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,277,178
Number of Sequences: 62578
Number of extensions: 473832
Number of successful extensions: 1097
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1076
Number of HSP's gapped (non-prelim): 19
length of query: 375
length of database: 14,973,337
effective HSP length: 100
effective length of query: 275
effective length of database: 8,715,537
effective search space: 2396772675
effective search space used: 2396772675
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)