Query 017242
Match_columns 375
No_of_seqs 168 out of 1507
Neff 8.1
Searched_HMMs 29240
Date Mon Mar 25 11:16:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017242.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017242hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3umv_A Deoxyribodipyrimidine p 100.0 4.8E-75 1.6E-79 586.1 35.1 361 9-373 19-385 (506)
2 2xry_A Deoxyribodipyrimidine p 100.0 6.5E-69 2.2E-73 542.2 27.7 359 4-373 14-385 (482)
3 3fy4_A 6-4 photolyase; DNA rep 100.0 1.4E-62 4.9E-67 498.0 23.3 321 27-373 3-356 (537)
4 1owl_A Photolyase, deoxyribodi 100.0 1E-60 3.6E-65 481.9 27.9 316 29-373 3-341 (484)
5 1dnp_A DNA photolyase; DNA rep 100.0 5.9E-61 2E-65 481.6 22.6 315 30-373 2-333 (471)
6 3tvs_A Cryptochrome-1; circadi 100.0 1.5E-60 5.2E-65 484.1 24.5 326 28-373 3-369 (538)
7 2j07_A Deoxyribodipyrimidine p 100.0 7.7E-60 2.6E-64 467.5 28.1 298 29-373 2-302 (420)
8 2wq7_A RE11660P; lyase-DNA com 100.0 9.3E-60 3.2E-64 480.6 28.9 324 29-373 29-380 (543)
9 2e0i_A 432AA long hypothetical 100.0 2.3E-60 7.9E-65 472.7 22.5 289 31-373 3-301 (440)
10 1np7_A DNA photolyase; protein 100.0 8.2E-60 2.8E-64 476.4 26.7 318 28-373 5-347 (489)
11 1u3d_A Cryptochrome 1 apoprote 100.0 4E-58 1.4E-62 465.9 29.7 318 26-373 9-351 (509)
12 2j4d_A Cryptochrome 3, cryptoc 100.0 1.4E-57 4.7E-62 462.9 29.0 318 28-373 39-383 (525)
13 3zxs_A Cryptochrome B, rscryb; 100.0 2.3E-38 7.8E-43 315.6 20.6 310 30-373 16-368 (522)
14 3dlo_A Universal stress protei 94.6 0.25 8.4E-06 40.7 10.2 87 38-126 32-123 (155)
15 3s3t_A Nucleotide-binding prot 94.5 0.18 6.3E-06 40.5 8.9 88 38-126 13-114 (146)
16 3fg9_A Protein of universal st 94.0 0.39 1.3E-05 39.1 10.1 87 39-126 26-125 (156)
17 3fdx_A Putative filament prote 94.0 0.32 1.1E-05 38.8 9.3 83 43-126 16-112 (143)
18 3tnj_A Universal stress protei 93.7 0.28 9.7E-06 39.6 8.6 88 38-126 14-115 (150)
19 3hgm_A Universal stress protei 92.9 0.46 1.6E-05 38.0 8.6 84 42-126 14-116 (147)
20 2dum_A Hypothetical protein PH 92.8 0.37 1.3E-05 39.9 8.0 88 38-126 13-123 (170)
21 1tq8_A Hypothetical protein RV 92.7 0.39 1.3E-05 39.8 8.0 87 38-126 25-125 (163)
22 3idf_A USP-like protein; unive 91.5 1 3.6E-05 35.5 9.0 82 42-126 13-107 (138)
23 3olq_A Universal stress protei 91.4 3.6 0.00012 37.4 13.9 116 44-160 177-309 (319)
24 1mjh_A Protein (ATP-binding do 90.6 0.75 2.6E-05 37.5 7.5 88 38-126 13-126 (162)
25 3loq_A Universal stress protei 90.5 1.4 4.7E-05 39.9 9.9 107 38-155 178-289 (294)
26 2z08_A Universal stress protei 89.6 1.1 3.7E-05 35.4 7.5 84 42-126 14-105 (137)
27 1jmv_A USPA, universal stress 88.1 1.3 4.6E-05 34.9 7.1 115 38-155 10-137 (141)
28 3mt0_A Uncharacterized protein 86.5 2.8 9.4E-05 37.8 9.0 83 43-126 154-243 (290)
29 2gm3_A Unknown protein; AT3G01 85.7 5.8 0.0002 32.5 10.0 82 44-126 28-130 (175)
30 1q77_A Hypothetical protein AQ 84.3 4 0.00014 31.9 8.0 88 38-127 12-116 (138)
31 3loq_A Universal stress protei 81.9 5 0.00017 36.1 8.6 87 38-127 30-130 (294)
32 3mt0_A Uncharacterized protein 81.2 4.5 0.00015 36.4 8.0 78 38-126 15-95 (290)
33 3olq_A Universal stress protei 79.0 13 0.00044 33.6 10.4 118 38-158 15-152 (319)
34 3cis_A Uncharacterized protein 75.5 4.9 0.00017 36.5 6.4 86 38-126 179-273 (309)
35 3cis_A Uncharacterized protein 70.9 14 0.00048 33.3 8.4 115 38-157 27-162 (309)
36 3ab8_A Putative uncharacterize 70.1 7.7 0.00026 34.2 6.3 82 42-126 12-115 (268)
37 3rjz_A N-type ATP pyrophosphat 66.0 11 0.00038 33.4 6.2 90 55-153 25-121 (237)
38 3ab8_A Putative uncharacterize 57.5 15 0.0005 32.3 5.6 77 38-126 162-240 (268)
39 3fvv_A Uncharacterized protein 44.7 23 0.00079 29.9 4.6 43 83-126 94-136 (232)
40 3dx5_A Uncharacterized protein 39.7 1E+02 0.0034 27.0 8.3 77 47-124 86-167 (286)
41 3h75_A Periplasmic sugar-bindi 38.6 1.3E+02 0.0046 27.0 9.2 73 81-158 18-96 (350)
42 2l82_A Designed protein OR32; 37.1 1E+02 0.0035 23.6 6.5 52 103-156 6-60 (162)
43 3ixr_A Bacterioferritin comigr 32.6 1E+02 0.0034 25.1 6.6 40 83-123 71-110 (179)
44 3n07_A 3-deoxy-D-manno-octulos 32.3 1.4E+02 0.0047 24.9 7.5 39 91-130 62-100 (195)
45 3rfu_A Copper efflux ATPase; a 31.3 56 0.0019 33.9 5.6 45 87-132 560-604 (736)
46 3mmz_A Putative HAD family hyd 30.6 1.7E+02 0.0058 23.6 7.7 40 89-130 47-86 (176)
47 3mn1_A Probable YRBI family ph 30.5 57 0.0019 27.0 4.7 39 89-128 54-92 (189)
48 3cqj_A L-ribulose-5-phosphate 29.6 1.9E+02 0.0065 25.2 8.4 78 47-125 110-192 (295)
49 3e8m_A Acylneuraminate cytidyl 28.7 1.9E+02 0.0065 22.6 7.6 42 89-131 39-80 (164)
50 3l49_A ABC sugar (ribose) tran 28.6 2.6E+02 0.009 23.9 9.2 73 80-157 18-95 (291)
51 3ij5_A 3-deoxy-D-manno-octulos 28.4 62 0.0021 27.5 4.7 41 89-130 84-124 (211)
52 3n1u_A Hydrolase, HAD superfam 28.0 1.9E+02 0.0065 23.7 7.7 41 90-131 55-95 (191)
53 3ngf_A AP endonuclease, family 27.3 2E+02 0.0067 24.8 8.0 78 46-125 94-181 (269)
54 3ayv_A Putative uncharacterize 26.7 2.1E+02 0.0072 24.3 8.0 73 47-120 78-154 (254)
55 3ujp_A Mn transporter subunit; 26.3 2E+02 0.007 26.0 8.0 68 80-155 166-246 (307)
56 3j08_A COPA, copper-exporting 26.1 69 0.0024 32.5 5.2 47 85-132 461-507 (645)
57 2l69_A Rossmann 2X3 fold prote 26.0 2E+02 0.0069 21.3 6.8 42 84-126 13-56 (134)
58 3gi1_A LBP, laminin-binding pr 25.9 1.5E+02 0.0053 26.4 7.0 68 80-155 157-235 (286)
59 1k77_A EC1530, hypothetical pr 25.4 2.5E+02 0.0084 23.8 8.2 78 46-125 86-174 (260)
60 1toa_A Tromp-1, protein (perip 25.4 1.5E+02 0.0052 26.9 7.0 66 82-155 175-253 (313)
61 2p9j_A Hypothetical protein AQ 25.2 1.2E+02 0.0041 23.8 5.6 43 87-130 42-84 (162)
62 3jy6_A Transcriptional regulat 24.8 3.2E+02 0.011 23.2 9.0 71 80-157 20-94 (276)
63 3cx3_A Lipoprotein; zinc-bindi 24.5 1.8E+02 0.006 26.0 7.1 66 82-155 157-233 (284)
64 2prs_A High-affinity zinc upta 24.3 1.6E+02 0.0055 26.2 6.8 66 82-155 154-230 (284)
65 1i60_A IOLI protein; beta barr 23.7 3.4E+02 0.012 23.0 9.4 74 47-121 86-166 (278)
66 2pwj_A Mitochondrial peroxired 23.6 2.4E+02 0.0083 22.5 7.4 44 83-127 64-111 (171)
67 4gxt_A A conserved functionall 23.6 35 0.0012 32.3 2.3 39 82-121 222-260 (385)
68 2pr7_A Haloacid dehalogenase/e 23.6 70 0.0024 24.0 3.8 39 81-120 18-56 (137)
69 3qk7_A Transcriptional regulat 23.2 2.8E+02 0.0095 24.0 8.3 88 59-157 6-97 (294)
70 2o1e_A YCDH; alpha-beta protei 23.1 1.9E+02 0.0064 26.3 7.1 67 81-155 169-246 (312)
71 3gkn_A Bacterioferritin comigr 22.9 1.1E+02 0.0039 23.9 5.1 43 82-125 54-96 (163)
72 1pq4_A Periplasmic binding pro 22.9 1.6E+02 0.0055 26.4 6.6 66 82-155 170-244 (291)
73 1xvl_A Mn transporter, MNTC pr 22.8 2.5E+02 0.0085 25.6 7.9 66 82-155 182-260 (321)
74 1k1e_A Deoxy-D-mannose-octulos 22.6 1.1E+02 0.0039 24.6 5.1 42 88-130 42-83 (180)
75 3l23_A Sugar phosphate isomera 22.2 4E+02 0.014 23.4 9.3 54 47-104 110-165 (303)
76 3j09_A COPA, copper-exporting 21.8 90 0.0031 32.1 5.1 46 86-132 540-585 (723)
77 4fe7_A Xylose operon regulator 21.4 2.1E+02 0.0071 26.6 7.3 69 80-157 37-106 (412)
78 2r8e_A 3-deoxy-D-manno-octulos 21.3 99 0.0034 25.3 4.5 42 89-131 61-102 (188)
79 3nkl_A UDP-D-quinovosamine 4-d 21.3 1.8E+02 0.006 22.3 5.8 46 109-156 54-100 (141)
80 3uhf_A Glutamate racemase; str 21.3 1.4E+02 0.0049 26.7 5.8 61 63-124 52-114 (274)
81 3kws_A Putative sugar isomeras 20.9 4E+02 0.014 22.9 8.8 79 46-125 105-194 (287)
82 3egc_A Putative ribose operon 20.6 3.3E+02 0.011 23.3 8.1 84 59-157 8-96 (291)
83 1a76_A Flap endonuclease-1 pro 20.5 90 0.0031 28.6 4.4 41 85-126 131-171 (326)
84 3out_A Glutamate racemase; str 20.5 1.8E+02 0.0062 25.8 6.3 61 63-124 35-98 (268)
No 1
>3umv_A Deoxyribodipyrimidine photo-lyase; CPD cyclobutane pyrimidine dimers, UV damaged DNA, DNA repai flavoprotein; HET: FAD; 1.71A {Oryza sativa japonica group}
Probab=100.00 E-value=4.8e-75 Score=586.06 Aligned_cols=361 Identities=58% Similarity=1.042 Sum_probs=308.8
Q ss_pred CccccccccccccCcCCCCCCcEEEEeeCCCCccCCHHHHHHHHHHhhCCCCEEEEEEcCCC--CcCcchhHHHHHHHhH
Q 017242 9 TAVQPGRIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQ--FLGAKARQLGFMLRGL 86 (375)
Q Consensus 9 ~~~~~~r~~~~~~~~~~~~~~~~l~WfrrDLRl~DN~aL~~A~~~a~~~~~~vl~vfi~dp~--~~~~~~~r~~Fl~esL 86 (375)
..++++|||.||+++ .+.++.+|||||||||++||+||.+|++.|++.+.+|+||||+||. +...+.+|++||++||
T Consensus 19 ~~~~~~r~~~l~~~~-~~~~~~vlvWFRrDLRl~DN~AL~~A~~~a~~~~~pVl~vfildp~~~~~~~~~~r~~FL~~sL 97 (506)
T 3umv_A 19 SPAHPSRVRVIHPGG-GKPGGPVVYWMLRDQRLADNWALLHAAGLAAASASPLAVAFALFPRPFLLSARRRQLGFLLRGL 97 (506)
T ss_dssp CCSCGGGEEEEECCC-SCTTSCEEEEESSCCCSTTCHHHHHHHHHHHHHTCCEEEEEECCCTTCGGGCCHHHHHHHHHHH
T ss_pred cccCHhHhhhhccCC-CCCCCEEEEEeCCCcchhhcHHHHHHHHhhhhcCCCEEEEEeccchhhccCCCHHHHHHHHHHH
Confidence 567899999999987 6678899999999999999999999999887677899999999998 4468899999999999
Q ss_pred HHHHHHHHHhcCCcEEEEcCCccchHHHHHHHhCCCEEEEcCCcchHHHHHHHHHHHHc---CCCceEEEecCCeeeecc
Q 017242 87 RLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICNRV---SDSVTIHEVDAHNVVPVW 163 (375)
Q Consensus 87 ~~L~~~L~~~~g~~L~v~~g~~~~~l~~l~~~~~~~~V~~~~~p~~~~~~rd~~v~~~l---~~~i~~~~~~~~~l~~~~ 163 (375)
.+|+++| +++|++|+|+.|++.++ ++|+++++|+.|++|++|...+++||++|++.| +.||++++|++++|++|+
T Consensus 98 ~dL~~~L-~~lG~~L~v~~G~p~~v-~~L~~~~~a~~V~~d~ep~~~~r~rD~~V~~~l~~~~~gi~~~~~~~~~l~~p~ 175 (506)
T 3umv_A 98 RRLAADA-AARHLPFFLFTGGPAEI-PALVQRLGASTLVADFSPLRPVREALDAVVGDLRREAPGVAVHQVDAHNVVPVW 175 (506)
T ss_dssp HHHHHHH-HHTTCCEEEESSCTTHH-HHHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHHHCTTSEEEEECCSCSSCHH
T ss_pred HHHHHHH-HHcCCceEEEecChHHH-HHHHHhcCCCEEEeccChhHHHHHHHHHHHHHHhhccCCeEEEEeCCcEEECcc
Confidence 9999999 99999999999999999 999999999999999999987788999999887 579999999999999999
Q ss_pred cccccCCcchhhhHHHHHhhCCCcCCCCCCCCCCCCccCC-CCCCCChHHHHHHHHhcCCCCCCcccCCCcHHHHHHHHc
Q 017242 164 VASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQPIEKWTG-TRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLK 242 (375)
Q Consensus 164 ~~~~~~~~~~~t~~~~~~~~~~~~~~~~p~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~gGe~~A~~~L~ 242 (375)
.+.++.+|+++||++++++.+..++.+.|.. +...+++. .+..+++..+.+.+...+..++...++.|||++|+++|+
T Consensus 176 ~v~~~~~~~~~t~~~~~~~~~~~~~~~~p~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~Ge~~A~~~L~ 254 (506)
T 3umv_A 176 TASAKMEYSAKTFRGKVSKVMDEYLVEFPEL-PAVVPWDREQPEGVDWDALIARVCSEAENVPEIDWCEPGEEAAIEALL 254 (506)
T ss_dssp HHCSSCCSSHHHHHHHHHTTHHHHSCCCCCC-CCCCCCCSCCCCCCCHHHHHHHHHHTSCCCCCCCSSCCSHHHHHHHHH
T ss_pred cccCCCCCCccCHHHHHHHhccccccCCCCC-CCccccccccccccChhhhhhhhccccccccccCCCCCCHHHHHHHHH
Confidence 9888889999999999887654444444432 11111111 122345554433222333334434467899999999998
Q ss_pred cchhHHHhhhcCCCCCcCCCCCCCCCCccCchhhhcCcccHHHHHHHHHHHhhcCcchHHHHHHHhHHHHHHhhhhhhcC
Q 017242 243 GSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVRRELADNFCFYQ 322 (375)
Q Consensus 243 ~~~~~Fl~~~l~~Y~~~Rd~p~~~~~tS~LSpyL~~G~IS~R~v~~~~~~~~~~~~~~~~~fl~eL~wRrEf~~~~~~~~ 322 (375)
|+++.|+.+++.+|+++||.|+..++||+|||||+||+||||+|++++.+......++.++|++||+||||||+++++++
T Consensus 255 ~~~~~Fl~~~l~~Y~~~Rd~p~~~~~tS~LSPyL~~G~lS~r~v~~~~~~~~~~~~~~~~~f~~eL~WRREf~~~~~~~~ 334 (506)
T 3umv_A 255 GSKDGFLTKRIKSYETDRNDPTKPRALSGLSPYLHFGHISAQRCALEAKKCRHLSPKSVDAFLEELVVRRELADNFCYYQ 334 (506)
T ss_dssp CTTTCHHHHTGGGHHHHTTCTTCGGGSCCCHHHHHHTSSCHHHHHHHHHHHGGGSHHHHHHHHHHHTHHHHHHHHHHHHC
T ss_pred hhHHHHHHhHHhhhccccCCccccCCCccCCHHHhCCCcCHHHHHHHHHHHHhhccccHHHHHHHHHHhHHHHHHHHHhC
Confidence 88889999999999999999976579999999999999999999999987654455678899999999889999999999
Q ss_pred CCCCCCcCchHHHHHhHhhhhcCCcccCCCHHHHhhCCCCchhhhHhhhhh
Q 017242 323 PNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPVSIYLWMFI 373 (375)
Q Consensus 323 P~~~~~~~~~~W~~~~l~~~~~d~~~w~~~~e~~~~G~TG~PiVDA~~~~~ 373 (375)
|+|+.+.+.++|+..++.+|..|.+++.|+.++|++|+||||+|||+|.-|
T Consensus 335 p~~~~~~~~~~w~~~~l~~~~~d~~~~~~~~~~w~~G~TG~p~vDA~mrqL 385 (506)
T 3umv_A 335 PQYDSLSGAWEWARKTLMDHAADKREHIYTREQLENAKTHDPLWNASQLEM 385 (506)
T ss_dssp TTTTSGGGSCHHHHHHHHHTTTSCCSCCCCHHHHHTTCSSCHHHHHHHHHH
T ss_pred cchhhhhccchhhhhhhhhhcccchhhhccHHHHHcCCCCCHHHHHHHHHH
Confidence 999988888999999999998888889899999999999999999999755
No 2
>2xry_A Deoxyribodipyrimidine photolyase; DNA damage, DNA repair; HET: FAD; 1.50A {Methanosarcina mazei} PDB: 2xrz_A*
Probab=100.00 E-value=6.5e-69 Score=542.23 Aligned_cols=359 Identities=43% Similarity=0.709 Sum_probs=290.9
Q ss_pred CCCCCCccccccccccccCcCCCCCCcEEEEeeCCCCccCCHHHHHHHHHHhhCCCCEEEEEEcCCCCcCcchhHHHHHH
Q 017242 4 LTPPSTAVQPGRIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFML 83 (375)
Q Consensus 4 ~~~~~~~~~~~r~~~~~~~~~~~~~~~~l~WfrrDLRl~DN~aL~~A~~~a~~~~~~vl~vfi~dp~~~~~~~~r~~Fl~ 83 (375)
+.+....++.+|||.+|+++. ++| .+|+|||+|||++||+||.+|++.|++.+.+|+||||+||.++..+.+|++||+
T Consensus 14 ~~~~~~~~~~~r~~~~~~~~~-~~g-~~l~WfrrDLRl~DN~aL~~A~~~a~~~~~~v~~vfi~dp~~~~~~~~r~~Fl~ 91 (482)
T 2xry_A 14 LVPRGSHMNPKRIRALKSGKQ-GDG-PVVYWMSRDQRAEDNWALLFSRAIAKEANVPVVVVFCLTDEFLEAGIRQYEFML 91 (482)
T ss_dssp CCCTTCCCCGGGEEEEECCCC-CSS-CEEEECSSCCCSSSCHHHHHHHHHHHHHTSCEEEEEEECTTGGGSCHHHHHHHH
T ss_pred cCcccccCCHHHhHHhhcCCC-CCC-cEEEEecCCCCccccHHHHHHHHHHHHcCCcEEEEEEeChhhhccCHHHHHHHH
Confidence 345566788999999999874 455 899999999999999999999987766678999999999998889999999999
Q ss_pred HhHHHHHHHHHHhcCCcEEEEcCCccchHHHHHHHhCCCEEEEcCCcchHHHHHHHHHHHHcCCCceEEEecCCeeeecc
Q 017242 84 RGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICNRVSDSVTIHEVDAHNVVPVW 163 (375)
Q Consensus 84 esL~~L~~~L~~~~g~~L~v~~g~~~~~l~~l~~~~~~~~V~~~~~p~~~~~~rd~~v~~~l~~~i~~~~~~~~~l~~~~ 163 (375)
+||++|+++| +++|++|+++.|++.++|++|+++++|+.|+++.++...+++++++|++.+ ||+++++++++|++++
T Consensus 92 ~sL~~L~~~L-~~~G~~L~v~~g~~~~~l~~l~~~~~~~~V~~~~~~~~~~~~~~~~v~~~l--gi~~~~~~~~~l~~~~ 168 (482)
T 2xry_A 92 KGLQELEVSL-SRKKIPSFFLRGDPGEKISRFVKDYNAGTLVTDFSPLRIKNQWIEKVISGI--SIPFFEVDAHNVVPCW 168 (482)
T ss_dssp HHHHHHHHHH-HHTTCCEEEEESCHHHHHHHHHHHTTCSEEEEECCCSHHHHHHHHHHHHHC--CSCEEEECCSSSSCHH
T ss_pred HHHHHHHHHH-HHcCCcEEEEeCCHHHHHHHHHHHcCCCEEEEecccchhHHHHHHHHHHHc--CCEEEEEeCCEEcccc
Confidence 9999999999 999999999999999999999999999999998777766788999999877 9999999999999999
Q ss_pred cccccCCcchhhhHHHHHhhCCCcCCCCCCCCCCCCccCC-CCCCC-C-hHHHHH--HHHhc-----CCCCCCc---ccC
Q 017242 164 VASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQPIEKWTG-TRQSI-D-WDSIIA--AVLRK-----GAEVPEI---GWC 230 (375)
Q Consensus 164 ~~~~~~~~~~~t~~~~~~~~~~~~~~~~p~~~~~~~~~~~-~~~~~-~-~~~~~~--~~~~~-----~~~~~~~---~~~ 230 (375)
.+.++.+|.++||++++.+.+..++.+.|...|.+.+... .+... + .+.+.. .+... +...... ..|
T Consensus 169 ~~~~~~~~~v~tf~~~~~~~~~~~~~~~p~~~p~~~~~~lp~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~ 248 (482)
T 2xry_A 169 EASQKHEYAAHTFRPKLYALLPEFLEEFPELEPNSVTPELSAGAGMVETLSDVLETGVKALLPERALLKNKDPLFEPWHF 248 (482)
T ss_dssp HHCSSCCSSHHHHHHHHHHHHHHHCCCCCCCCCCSSCCC---------CHHHHHHHHHHHHGGGCCBCTTSCBCCCTTSC
T ss_pred ccccCCCCceecchHHHHHHHHhhccccCCCCCCCCccccCCccchhhhhhhhcccCCCCCcchhhhccccccccccCCC
Confidence 8888778999999998766443223222210011100000 00000 0 111110 11111 1111111 157
Q ss_pred CCcHHHHHHHHccchhHHHhhhcCCCCCcCCCCCCCCCCccCchhhhcCcccHHHHHHHHHHHhhcCcchHHHHHHHhHH
Q 017242 231 ESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIV 310 (375)
Q Consensus 231 ~gGe~~A~~~L~~~~~~Fl~~~l~~Y~~~Rd~p~~~~~tS~LSpyL~~G~IS~R~v~~~~~~~~~~~~~~~~~fl~eL~w 310 (375)
+|||++|+++| ++|+++++.+|++.||.|+. ++||+|||||+||+||||+|++++.+... ..++.++|++||+|
T Consensus 249 ~~Ge~~A~~~L----~~Fl~~~l~~Y~~~Rd~p~~-~~tS~LSPyL~~G~LSpR~v~~~~~~~~~-~~~~~e~fl~ELi~ 322 (482)
T 2xry_A 249 EPGEKAAKKVM----ESFIADRLDSYGALRNDPTK-NMLSNLSPYLHFGQISSQRVVLEVEKAES-NPGSKKAFLDEILI 322 (482)
T ss_dssp CCSHHHHHHHH----HHHHHHTHHHHHHHTTCTTS-CCSCCCHHHHHTTSSCHHHHHHHHHHCCC-CTTHHHHHHHHHTH
T ss_pred CCcHHHHHHHH----HHHHHHHHhhhccccCCCCc-cCCCCcCHHHhCCccCHHHHHHHHHHhhc-ccccHHHHHHHHHH
Confidence 89999999999 99999999999999999988 99999999999999999999999876532 35678899999994
Q ss_pred HHHHhhhhhhcCCCCCCCcCchHHHHHhHhhhhcCCcccCCCHHHHhhCCCCchhhhHhhhhh
Q 017242 311 RRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPVSIYLWMFI 373 (375)
Q Consensus 311 RrEf~~~~~~~~P~~~~~~~~~~W~~~~l~~~~~d~~~w~~~~e~~~~G~TG~PiVDA~~~~~ 373 (375)
|||||+++++++|+|+.+.+.++|++.++..|..|.++|.+..++|++|+||||||||+|.=|
T Consensus 323 WREf~~~~~~~~P~~~~~~~~~~w~~~~~~~~~~d~~~~~~~~~aw~~G~TG~P~VDAaMrqL 385 (482)
T 2xry_A 323 WKEISDNFCYYNPGYDGFESFPSWAKESLNAHRNDVRSHIYTLEEFEAGKTHDPLWNASQMEL 385 (482)
T ss_dssp HHHHHHHHHHHCTTTTSGGGSCHHHHHHHHHTTTSCCSCCCCHHHHHTTCSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCcccccccchHHHhhhhhhcccCchhhhHHHHHHHhCCcCCHHHHHHHHHH
Confidence 459999999999999988888899999997777777889999999999999999999999654
No 3
>3fy4_A 6-4 photolyase; DNA repair, clock cryptochrome; HET: MES FAD; 2.70A {Arabidopsis thaliana}
Probab=100.00 E-value=1.4e-62 Score=498.00 Aligned_cols=321 Identities=17% Similarity=0.188 Sum_probs=251.2
Q ss_pred CCCcEEEEeeCCCCccCCHHHHHHHHHHhhCCCCEEEEEEcCCCCcC------------cchhHHHHHHHhHHHHHHHHH
Q 017242 27 KRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLG------------AKARQLGFMLRGLRLLQRNIE 94 (375)
Q Consensus 27 ~~~~~l~WfrrDLRl~DN~aL~~A~~~a~~~~~~vl~vfi~dp~~~~------------~~~~r~~Fl~esL~~L~~~L~ 94 (375)
.++++|||||||||++||+||++|++ .+.+|+||||+||.++. .+++|++||++||.+|+++|
T Consensus 3 ~~~~~lvWFRrDLRl~DN~AL~~A~~----~~~~vlpvfi~dp~~~~~~~~~~~~g~~~~g~~r~~Fl~~sL~~L~~~L- 77 (537)
T 3fy4_A 3 TGSGSLIWFRKGLRVHDNPALEYASK----GSEFMYPVFVIDPHYMESDPSAFSPGSSRAGVNRIRFLLESLKDLDSSL- 77 (537)
T ss_dssp -CCEEEEEESSCCCSTTCHHHHHHHT----TCSCEEEEEEECHHHHSCCTTSSSSBCSSCBHHHHHHHHHHHHHHHHHH-
T ss_pred CCCcEEEEeCCCcccchhHHHHHHHh----cCCCEEEEEEeChhhhcccccccccccccCCHHHHHHHHHHHHHHHHHH-
Confidence 35678999999999999999999987 46799999999997643 78999999999999999999
Q ss_pred HhcCCcEEEEcCCccchHHHHHHHhCCCEEEEcCCcchHHHHHHHHHHHHc-CCCceEEEecCCeeeecccccc---cCC
Q 017242 95 ETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICNRV-SDSVTIHEVDAHNVVPVWVASE---KLE 170 (375)
Q Consensus 95 ~~~g~~L~v~~g~~~~~l~~l~~~~~~~~V~~~~~p~~~~~~rd~~v~~~l-~~~i~~~~~~~~~l~~~~~~~~---~~~ 170 (375)
+++|++|+|+.|++.++|++|+++++|++|+++.++...+++||++|++.| +.||+++++++++|++|+.+.+ +.+
T Consensus 78 ~~~G~~L~v~~G~~~~vl~~L~~~~~~~~V~~n~~~~p~~~~RD~~v~~~l~~~gI~~~~~~~~~L~~p~~v~~~~~~~~ 157 (537)
T 3fy4_A 78 KKLGSRLLVFKGEPGEVLVRCLQEWKVKRLCFEYDTDPYYQALDVKVKDYASSTGVEVFSPVSHTLFNPAHIIEKNGGKP 157 (537)
T ss_dssp HHTTCCCEEEESCHHHHHHHHHTTSCEEEEEECCCCSHHHHHHHHHHHHHHHHTTCEEECCCCSSSSCHHHHHHHTSSSC
T ss_pred HHcCCceEEEECCHHHHHHHHHHHcCCCEEEEeccccHHHHHHHHHHHHHHHHcCCeEEEecCCEEEchhhcccCCCCCC
Confidence 999999999999999999999999999999997655555789999999999 7899999999999999998752 348
Q ss_pred cchhhhHHHHHhhCCCcCCC---CCCCCCCCCccCC-CCCCCChHHHHHHHHhcCCC---CCCcccCCCcHHHHHHHHcc
Q 017242 171 YSAKTLRGKINKLLPEYLID---YPMLEQPIEKWTG-TRQSIDWDSIIAAVLRKGAE---VPEIGWCESGEDAAMEVLKG 243 (375)
Q Consensus 171 ~~~~t~~~~~~~~~~~~~~~---~p~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~---~~~~~~~~gGe~~A~~~L~~ 243 (375)
|.+||+|++.+........| .|...|....... ....++ ++.+++.. ......|+|||++|+++|
T Consensus 158 y~vftpf~k~~~~~~~~~~p~~~~p~~~~~~~~~~~~~~~~~p------~l~~l~~~~~~~~~~~~~~~Ge~~A~~~L-- 229 (537)
T 3fy4_A 158 PLSYQSFLKVAGEPSCAKSELVMSYSSLPPIGDIGNLGISEVP------SLEELGYKDDEQADWTPFRGGESEALKRL-- 229 (537)
T ss_dssp CSSHHHHHHHHCCCTTTTCCCCCCCSCCCCCCCCCSSCCCCCC------CTTTTTCCGGGSSCCCSCCCSHHHHHHHH--
T ss_pred CCccCHHHHHHHhhcCCcCCCCCccccCCCcccccccccccCC------cHHhcCCCcccccccCCCCccHHHHHHHH--
Confidence 99999888766532210111 1110010000000 000010 01011110 001224789999999999
Q ss_pred chhHHHhh--hcCCCCCcCCCCCC--CCCCccCchhhhcCcccHHHHHHHHHHHhhc---CcchHHHHHHHhHHHHHHhh
Q 017242 244 SKDGFLTK--RLKNYPTDRNNPLK--PRALSGLSPYLHFGQISAQRCALEARKARKL---CPEAIDTFLEELIVRRELAD 316 (375)
Q Consensus 244 ~~~~Fl~~--~l~~Y~~~Rd~p~~--~~~tS~LSpyL~~G~IS~R~v~~~~~~~~~~---~~~~~~~fl~eL~wRrEf~~ 316 (375)
++|+.+ .+.+|++.||.|+. .++||+|||||+|||||||+|++++.+.... ..++.++|++||+|| |||+
T Consensus 230 --~~Fl~~~~~l~~Y~~~rd~p~~~~~~~tS~LSpyL~~G~lS~r~v~~~~~~~~~~~~~~~~~~~~f~~eL~WR-ef~~ 306 (537)
T 3fy4_A 230 --TKSISDKAWVANFEKPKGDPSAFLKPATTVMSPYLKFGCLSSRYFYQCLQNIYKDVKKHTSPPVSLLGQLLWR-EFFY 306 (537)
T ss_dssp --HHHTCCHHHHHTCCGGGCCTTCCSSCSSCCCHHHHHTTSSCHHHHHHHHHHHHHTTSCCCCTTTSHHHHHHHH-HHHH
T ss_pred --HHHHhCchHHhhhcccccCccccCCCCCccCCHHHhCCCcCHHHHHHHHHHHHhhcccccccHHHHHHHHHHH-HHHH
Confidence 999987 69999999999972 4899999999999999999999999874421 234567899999998 9999
Q ss_pred hhhhcCCCCCCCcCchHHHHHhHhhhhcCCcccCCCHH---HHhhCCCCchhhhHhhhhh
Q 017242 317 NFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKE---QFEKAQTADPVSIYLWMFI 373 (375)
Q Consensus 317 ~~~~~~P~~~~~~~~~~W~~~~l~~~~~d~~~w~~~~e---~~~~G~TG~PiVDA~~~~~ 373 (375)
++++++|+++.+...+ .++.++|.++++ +|++|+||||||||+|.-|
T Consensus 307 ~~~~~~p~~~~~~~~~----------~~~~~~w~~~~~~~~aW~~G~TG~P~vDA~MrqL 356 (537)
T 3fy4_A 307 TTAFGTPNFDKMKGNR----------ICKQIPWNEDHAMLAAWRDGKTGYPWIDAIMVQL 356 (537)
T ss_dssp HHHHTCTTTTSSTTCT----------TSCCCCCBCCHHHHHHHHTTCSSCHHHHHHHHHH
T ss_pred HHHHHCcchhcccCCh----------hhhcCCchhhhHHHHHHHcCCCCCHHHHHHHHHH
Confidence 9999999987765543 467889988865 4669999999999999654
No 4
>1owl_A Photolyase, deoxyribodipyrimidine photolyase; DNA repair, flavin enzyme, photoreactivating enzyme; HET: FAD; 1.80A {Synechococcus elongatus} SCOP: a.99.1.1 c.28.1.1 PDB: 1owm_A* 1own_A* 1owo_A* 1owp_A* 1qnf_A* 1tez_A*
Probab=100.00 E-value=1e-60 Score=481.91 Aligned_cols=316 Identities=19% Similarity=0.179 Sum_probs=248.3
Q ss_pred CcEEEEeeCCCCccCCHHHHHHHHHHhhCCCCEEEEEEcCCCCc---CcchhHHHHHHHhHHHHHHHHHHhcCCcEEEEc
Q 017242 29 GPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFL---GAKARQLGFMLRGLRLLQRNIEETFQILFFLFQ 105 (375)
Q Consensus 29 ~~~l~WfrrDLRl~DN~aL~~A~~~a~~~~~~vl~vfi~dp~~~---~~~~~r~~Fl~esL~~L~~~L~~~~g~~L~v~~ 105 (375)
+++|+|||+|||++||+||.+|++. +.+|+||||+||.++ ..+.+|++||++||++|+++| +++|++|+++.
T Consensus 3 ~~~l~WfrrDLRl~Dn~aL~~A~~~----~~~v~~vfi~dp~~~~~~~~~~~r~~fl~~sL~~L~~~L-~~~G~~L~v~~ 77 (484)
T 1owl_A 3 APILFWHRRDLRLSDNIGLAAARAQ----SAQLIGLFCLDPQILQSADMAPARVAYLQGCLQELQQRY-QQAGSRLLLLQ 77 (484)
T ss_dssp CCEEEEESSCCCSSSCHHHHHHHHH----CSCEEEEEEECHHHHTCTTCCHHHHHHHHHHHHHHHHHH-HHHTSCEEEEE
T ss_pred ccEEEEECCCCCcchhHHHHHHHhc----CCCEEEEEEEcchhhcCCCCCHHHHHHHHHHHHHHHHHH-HHCCCeEEEEe
Confidence 5689999999999999999999873 348999999999764 478999999999999999999 99999999999
Q ss_pred CCccchHHHHHHHhCCCEEEEcCCcchHHHHHHHHHHHHc-CCCceEEEecCCeeeecccccc--cCCcchhhhHHHHH-
Q 017242 106 GEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICNRV-SDSVTIHEVDAHNVVPVWVASE--KLEYSAKTLRGKIN- 181 (375)
Q Consensus 106 g~~~~~l~~l~~~~~~~~V~~~~~p~~~~~~rd~~v~~~l-~~~i~~~~~~~~~l~~~~~~~~--~~~~~~~t~~~~~~- 181 (375)
|++.++|++|+++++|+.|+++.++...+++||++|++.| +.||+++++++++|++|+.+.+ |++|.+||+|++.+
T Consensus 78 g~~~~~l~~l~~~~~~~~v~~~~~~~p~~~~rd~~v~~~l~~~gi~~~~~~~~~l~~~~~~~~~~g~~~~vft~f~~~~~ 157 (484)
T 1owl_A 78 GDPQHLIPQLAQQLQAEAVYWNQDIEPYGRDRDGQVAAALKTAGIRAVQLWDQLLHSPDQILSGSGNPYSVYGPFWKNWQ 157 (484)
T ss_dssp SCHHHHHHHHHHHTTCSEEEEECCCSHHHHHHHHHHHHHHHHTTCEEEEECCSSSSCTTTCCCTTSCCCSSHHHHHHHHH
T ss_pred CCHHHHHHHHHHHcCCCEEEEeccCChhHHHHHHHHHHHHHHcCcEEEEecCCEEEchhhhcccCCCCchhhHHHHHHHH
Confidence 9999999999999999999997655555789999999999 7899999999999999998764 46899999666544
Q ss_pred hhCCCcCCCCCCCCCCCCccCCC-------CC-CCChHHHHHHHHhcCCCCCCcccCCCcHHHHHHHHccchhHHHhhhc
Q 017242 182 KLLPEYLIDYPMLEQPIEKWTGT-------RQ-SIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRL 253 (375)
Q Consensus 182 ~~~~~~~~~~p~~~~~~~~~~~~-------~~-~~~~~~~~~~~~~~~~~~~~~~~~~gGe~~A~~~L~~~~~~Fl~~~l 253 (375)
+.+. ..|.|. |...+.... +. ......+ ..+ .++.... . .|+|||++|+++| ++|+++++
T Consensus 158 ~~~~--~~p~~~--p~~~~~~~~~~~~~~~~~~~~~~~~~-~~l-~~~~~~~-~-~~~~Ge~~A~~~L----~~Fl~~~l 225 (484)
T 1owl_A 158 AQPK--PTPVAT--PTELVDLSPEQLTAIAPLLLSELPTL-KQL-GFDWDGG-F-PVEPGETAAIARL----QEFCDRAI 225 (484)
T ss_dssp HSCC--CCCCCC--CCSCCCCCHHHHHHHGGGCCSSCCCT-GGG-TCCCCSC-C-SSCSSHHHHHHHH----HHHHHTGG
T ss_pred HhcC--CCCCCC--ccccccccccccccccccccCCCCCH-HHc-CCCcccc-C-cCCCCHHHHHHHH----HHHHHHHH
Confidence 4332 122222 111110000 00 0000000 000 1111111 2 4789999999999 99999999
Q ss_pred CCCCCcCCCCCCCCCCccCchhhhcCcccHHHHHHHHHHHhhc-----CcchHHHHHHHhHHHHHHhhhhhhcCCCCCCC
Q 017242 254 KNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKL-----CPEAIDTFLEELIVRRELADNFCFYQPNYDSL 328 (375)
Q Consensus 254 ~~Y~~~Rd~p~~~~~tS~LSpyL~~G~IS~R~v~~~~~~~~~~-----~~~~~~~fl~eL~wRrEf~~~~~~~~P~~~~~ 328 (375)
.+|++.||.|+. ++||+|||||+||+||||+|++++.+.... ..++.++|++||+|| |||+++++++|++...
T Consensus 226 ~~Y~~~rd~p~~-~~tS~LSpyL~~G~lSpr~v~~~~~~~~~~~~~~~~~~~~~~fl~eL~WR-Ef~~~~~~~~P~~~~~ 303 (484)
T 1owl_A 226 ADYDPQRNFPAE-AGTSGLSPALKFGAIGIRQAWQAASAAHALSRSDEARNSIRVWQQELAWR-EFYQHALYHFPSLADG 303 (484)
T ss_dssp GGHHHHTTCTTS-CCSCCCHHHHHTTSSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH-HHHHHHHHHCGGGGGS
T ss_pred HHhccccCCCCc-cCCcCccHhHcCCCcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHH-HHHHHHHHhCCccccc
Confidence 999999999987 999999999999999999999999865431 134678999999998 9999999999998643
Q ss_pred cCchHHHHHhHhhhhcCCcccCCCHH---HHhhCCCCchhhhHhhhhh
Q 017242 329 KGAWEWARKSLKDHASDKREHIYTKE---QFEKAQTADPVSIYLWMFI 373 (375)
Q Consensus 329 ~~~~~W~~~~l~~~~~d~~~w~~~~e---~~~~G~TG~PiVDA~~~~~ 373 (375)
.. +..++.++|.++++ .|++|+||||||||+|.=|
T Consensus 304 ~~----------~~~~~~l~w~~d~~~~~aW~~G~TG~P~vDAaMrqL 341 (484)
T 1owl_A 304 PY----------RSLWQQFPWENREALFTAWTQAQTGYPIVDAAMRQL 341 (484)
T ss_dssp CC----------STGGGGCCCCCCHHHHHHHHTTCSSCHHHHHHHHHH
T ss_pred cC----------ChhhhcCCCcCCHHHHHHHHcCCCCChhHHHHHHHH
Confidence 22 33456789988865 4669999999999999654
No 5
>1dnp_A DNA photolyase; DNA repair, electron transfer, excitation energy transfer, carbon-carbon, lyase (carbon-carbon); HET: DNA FAD MHF; 2.30A {Escherichia coli} SCOP: a.99.1.1 c.28.1.1
Probab=100.00 E-value=5.9e-61 Score=481.65 Aligned_cols=315 Identities=17% Similarity=0.139 Sum_probs=246.5
Q ss_pred cEEEEeeCCCCccCCHHHHHHHHHHhhCCCCEEEEEEcCCCCc---CcchhHHHHHHHhHHHHHHHHHHhcCCcEEEE--
Q 017242 30 PVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFL---GAKARQLGFMLRGLRLLQRNIEETFQILFFLF-- 104 (375)
Q Consensus 30 ~~l~WfrrDLRl~DN~aL~~A~~~a~~~~~~vl~vfi~dp~~~---~~~~~r~~Fl~esL~~L~~~L~~~~g~~L~v~-- 104 (375)
++|||||||||++||+||.+|++. + ..+|+||||+||.++ ..+.+|++||++||++|+++| +++|++|+++
T Consensus 2 ~~l~WfrrDLRl~DN~aL~~A~~~--~-~~~v~~vfi~dp~~~~~~~~~~~r~~fl~~sL~~L~~~L-~~~G~~L~v~~~ 77 (471)
T 1dnp_A 2 THLVWFRQDLRLHDNLALAAACRN--S-SARVLALYIATPRQWATHNMSPRQAELINAQLNGLQIAL-AEKGIPLLFREV 77 (471)
T ss_dssp EEEEECSSCCCSTTCHHHHHHSSS--T-TSEEEEEEEECHHHHHHTTCCHHHHHHHHHHHHHHHHHH-HHTTCCEEEEEC
T ss_pred CEEEEeCCCCcccchHHHHHHHhC--C-CCCEEEEEEECchhhccCCCCHHHHHHHHHHHHHHHHHH-HHCCCeEEEEEc
Confidence 579999999999999999999862 1 249999999999864 589999999999999999999 9999999999
Q ss_pred --cCCccchHHHHHHHhCCCEEEEcCCcchHHHHHHHHHHHHcCCCceEEEecCCeeeecccccc--cCCcchhhhHHH-
Q 017242 105 --QGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASE--KLEYSAKTLRGK- 179 (375)
Q Consensus 105 --~g~~~~~l~~l~~~~~~~~V~~~~~p~~~~~~rd~~v~~~l~~~i~~~~~~~~~l~~~~~~~~--~~~~~~~t~~~~- 179 (375)
.|++.++|.+|+++++|+.|+++.++...+++||++|++.|.. |+++++++++|++|+.+.+ |.+|.+||+|++
T Consensus 78 ~~~g~~~~~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~l~~-i~~~~~~~~~l~~~~~~~~~~g~~~~vft~f~~~ 156 (471)
T 1dnp_A 78 DDFVASVEIVKQVCAENSVTHLFYNYQYEVNERARDVEVERALRN-VVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNA 156 (471)
T ss_dssp SSHHHHHHHHHHHHHHHTCCEEEEECCCSHHHHHHHHHHHHHCTT-SEEEEECCSSSSCTTSSCCTTSCCCSSHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHcCCCEEEEecccCchHHHHHHHHHHHhcC-cEEEEecCCEEEchhhcccCCCCCCcchHHHHHH
Confidence 9999999999999999999999766555578999999999954 9999999999999998764 478999996655
Q ss_pred HHhhCCC-cCCCCCCCCCCCCccCCC-CCCCChHHHHHHHHhcCCCCCCcccCCCcHHHHHHHHccchhHHHhhhcCCCC
Q 017242 180 INKLLPE-YLIDYPMLEQPIEKWTGT-RQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLKNYP 257 (375)
Q Consensus 180 ~~~~~~~-~~~~~p~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~gGe~~A~~~L~~~~~~Fl~~~l~~Y~ 257 (375)
+.+.+.. ...+.|. |...+.+.. ...++ ++ ..+........|+|||++|+++| ++|+++++.+|+
T Consensus 157 ~~~~l~~~~p~~~~~--p~~~~~~~~~~~~~~------~l-~~~~~~~~~~~~~~Ge~~A~~~L----~~Fl~~~l~~Y~ 223 (471)
T 1dnp_A 157 WLKRLREGMPECVAA--PKVRSSGSIEPSPSI------TL-NYPRQSFDTAHFPVEEKAAIAQL----RQFCQNGAGEYE 223 (471)
T ss_dssp HHHHHHTCCCCCCCC--CCCCTTCCCCCCCCC------CC-CSCCCCCCTTTSCCSHHHHHHHH----HHHHHTHHHHHH
T ss_pred HHHhccccCCCCCCC--ccccCcccccCCCCc------cc-CCCccccccccCCCCHHHHHHHH----HHHHHHHHHHhh
Confidence 4443221 1111221 111110000 00111 00 11111011134789999999999 999999999999
Q ss_pred CcCCCCCCCCCCccCchhhhcCcccHHHHHHHHHHHhhc-Ccch-HHHHHHHhHHHHHHhhhhhhcCCCCCCCcCchHHH
Q 017242 258 TDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKL-CPEA-IDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWA 335 (375)
Q Consensus 258 ~~Rd~p~~~~~tS~LSpyL~~G~IS~R~v~~~~~~~~~~-~~~~-~~~fl~eL~wRrEf~~~~~~~~P~~~~~~~~~~W~ 335 (375)
+.||.|+. ++||+|||||+||+||||+|++++.+.... ..++ .++|++||+|| |||+++++++|+++...+.
T Consensus 224 ~~rd~p~~-~~tS~LSpyL~~G~lSpr~v~~~~~~~~~~~~~~~~~~~fl~eL~WR-Ef~~~~~~~~P~~~~~~~~---- 297 (471)
T 1dnp_A 224 QQRDFPAV-EGTSRLSASLATGGLSPRQCLHRLLAEQPQALDGGAGSVWLNELIWR-EFYRHLITYHPSLCKHRPF---- 297 (471)
T ss_dssp HHTTCTTS-CCSCCCHHHHHHTSSCHHHHHHHHHHHCGGGGGTSTTHHHHHHHHHH-HHHHHHHHHCGGGGGTCCS----
T ss_pred hccCCcCc-cCCCCCCHhHcCCCcCHHHHHHHHHHHhccccccccHHHHHHHHHHH-HHHHHHHHhCCchhccCCc----
Confidence 99999987 899999999999999999999999875432 1346 78999999998 9999999999998654222
Q ss_pred HHhHhhhhcCCcccCCCHHH---HhhCCCCchhhhHhhhhh
Q 017242 336 RKSLKDHASDKREHIYTKEQ---FEKAQTADPVSIYLWMFI 373 (375)
Q Consensus 336 ~~~l~~~~~d~~~w~~~~e~---~~~G~TG~PiVDA~~~~~ 373 (375)
+..++.++|.++++. |++|+||||||||+|.=|
T Consensus 298 -----~~~~~~l~w~~d~~~~~aW~~G~TG~P~vDAaMrqL 333 (471)
T 1dnp_A 298 -----IAWTDRVQWQSNPAHLQAWQEGKTGYPIVDAAMRQL 333 (471)
T ss_dssp -----SGGGGGSCCCCCHHHHHHHHHTCSSCHHHHHHHHHH
T ss_pred -----chhhhcCCCcCCHHHHHHHHhCCCCCHHHHHHHHHH
Confidence 234567899888765 559999999999999644
No 6
>3tvs_A Cryptochrome-1; circadian clock light entrainment, jetlag, phosphorylation, gene regulation, signaling protein; HET: TPO FAD; 2.30A {Drosophila melanogaster} PDB: 4gu5_A*
Probab=100.00 E-value=1.5e-60 Score=484.14 Aligned_cols=326 Identities=14% Similarity=0.135 Sum_probs=247.1
Q ss_pred CCcEEEEeeCCCCccCCHHHHHHHHHHhhCCCCEEEEEEcCCCCcC---cchhHHHHHHHhHHHHHHHHHHhc---CCcE
Q 017242 28 RGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLG---AKARQLGFMLRGLRLLQRNIEETF---QILF 101 (375)
Q Consensus 28 ~~~~l~WfrrDLRl~DN~aL~~A~~~a~~~~~~vl~vfi~dp~~~~---~~~~r~~Fl~esL~~L~~~L~~~~---g~~L 101 (375)
.+.+|||||||||++||+||.+|++.+. .+.+|+||||+||.++. .+.+|++||++||.+|+++| +++ |++|
T Consensus 3 ~~~~lvWFRrDLRl~DN~AL~~A~~~~~-~g~~vl~vfi~dp~~~~~~~~~~~r~~Fl~~sL~~L~~~L-~~~~~~G~~L 80 (538)
T 3tvs_A 3 RGANVIWFRHGLRLHDNPALLAALADKD-QGIALIPVFIFDGESAGTKNVGYNRMRFLLDSLQDIDDQL-QAATDGRGRL 80 (538)
T ss_dssp SCEEEEEESSCCCSSSCHHHHTTTGGGT-TTCBCCEEEEECSSSSCSTTCCHHHHHHHHHHHHHHHHHG-GGSCSSSSCC
T ss_pred CCcEEEEeCCCcchhhhHHHHHHHHhCC-CCCCEEEEEecChhhhccCCCCHHHHHHHHHHHHHHHHHH-HHhhcCCCeE
Confidence 4578999999999999999999987432 33499999999998764 78999999999999999999 999 9999
Q ss_pred EEEcCCccchHHHHHHHhCCCEEEEcCCcchHHHHHHHHHHHHc-CCCceEEEecCCeeeecccccc--c-CCcchhhhH
Q 017242 102 FLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICNRV-SDSVTIHEVDAHNVVPVWVASE--K-LEYSAKTLR 177 (375)
Q Consensus 102 ~v~~g~~~~~l~~l~~~~~~~~V~~~~~p~~~~~~rd~~v~~~l-~~~i~~~~~~~~~l~~~~~~~~--~-~~~~~~t~~ 177 (375)
+|+.|++.++|++|+++++|++|+++.++...+++||++|++.| +.||+++++++++|++|+.+.+ + .+|.+||.|
T Consensus 81 ~v~~G~~~~vl~~L~~~~~a~~V~~n~~~~~~~~~RD~~v~~~l~~~gi~~~~~~~~~l~~p~~v~~~~~~~~~~~f~~f 160 (538)
T 3tvs_A 81 LVFEGEPAYIFRRLHEQVRLHRICIEQDCEPIWNERDESIRSLCRELNIDFVEKVSHTLWDPQLVIETNGGIPPLTYQMF 160 (538)
T ss_dssp EEEESCHHHHHHHHHHHHCEEEECEECCCCGGGHHHHHHHHHHHHHSSCCCCEECCSSSSCTTHHHHHTTTSCCCSHHHH
T ss_pred EEEeCCHHHHHHHHHHHcCCCEEEEccCCCHHHHHHHHHHHHHHHhCCceEEEecCCEEEChhhcccCCCCCCCcchHHH
Confidence 99999999999999999999999996555545689999999999 7899999999999999998753 2 467778866
Q ss_pred HHHHhhCCCcCCCCCCCCCCC--CccCCCCCCC--Ch---HHHHHHHHhcCC--CCC---CcccCCCcHHHHHHHHccch
Q 017242 178 GKINKLLPEYLIDYPMLEQPI--EKWTGTRQSI--DW---DSIIAAVLRKGA--EVP---EIGWCESGEDAAMEVLKGSK 245 (375)
Q Consensus 178 ~~~~~~~~~~~~~~p~~~~~~--~~~~~~~~~~--~~---~~~~~~~~~~~~--~~~---~~~~~~gGe~~A~~~L~~~~ 245 (375)
.+.++.+.....|.+. |.. ......+... +. ..+ +.+.+++. ... ....|+|||++|+++|
T Consensus 161 ~~~~~~~~~~~~p~~~--p~~~~~~~~~~p~~~~~~~~~~~~~-p~l~~l~~~~~~~~~~~~~~~~~Ge~~A~~~L---- 233 (538)
T 3tvs_A 161 LHTVQIIGLPPRPTAD--ARLEDATFVELDPEFCRSLKLFEQL-PTPEHFNVYGDNMGFLAKINWRGGETQALLLL---- 233 (538)
T ss_dssp HHHHTTTTCSSCCCCC--CCCCCCCCCCCCTTTTTTSCCBSSC-CCTTTTSCCCCCSSCCCCCCCCCCHHHHHHHH----
T ss_pred HHHHHhhCCCCCCCCC--ccccccccccCCcccccccccccCC-CCHHHcCCCcccccccccCCCCCCHHHHHHHH----
Confidence 5554433322222222 110 0000000000 00 000 00111111 100 1234789999999999
Q ss_pred hHHHh--h--hcCCCCCcCCCCCC-CCCCccCchhhhcCcccHHHHHHHHHHHhhcC----------cchHHHHHHHhHH
Q 017242 246 DGFLT--K--RLKNYPTDRNNPLK-PRALSGLSPYLHFGQISAQRCALEARKARKLC----------PEAIDTFLEELIV 310 (375)
Q Consensus 246 ~~Fl~--~--~l~~Y~~~Rd~p~~-~~~tS~LSpyL~~G~IS~R~v~~~~~~~~~~~----------~~~~~~fl~eL~w 310 (375)
++|+. . .+.+|++.||.|.. .++||+|||||+||+||||+|++++.+..... ..+.++|++||+|
T Consensus 234 ~~Fl~~~~~~~l~~y~~~r~~~~~~~~~tS~LSpyL~~G~lS~r~v~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~eL~W 313 (538)
T 3tvs_A 234 DERLKVEQHAFERGFYLPNQALPNIHDSPKSMSAHLRFGCLSVRRFYWSVHDLFKNVQLRACVRGVQMTGGAHITGQLIW 313 (538)
T ss_dssp HHHHHHHHHHHHSCCCCTTTTSCCSSCCSCCCHHHHHTTSSCHHHHHHHHHHHTCSSSCCCCCSSSCCTTTTTTHHHHHH
T ss_pred HHHHHhhhhhhHhhhcccccCcccccCCCcCCCHHHhCCCcCHHHHHHHHHHHHhhhcccccccccccchHHHHHHHHHH
Confidence 99994 2 39999999999863 37999999999999999999999998754321 1345789999999
Q ss_pred HHHHhhhhhhcCCCCCCCcCchHHHHHhHhhhhcCCcccCC-CH---HHHhhCCCCchhhhHhhhhh
Q 017242 311 RRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIY-TK---EQFEKAQTADPVSIYLWMFI 373 (375)
Q Consensus 311 RrEf~~~~~~~~P~~~~~~~~~~W~~~~l~~~~~d~~~w~~-~~---e~~~~G~TG~PiVDA~~~~~ 373 (375)
| |||+++++++|+++.+... ..++.++|.. ++ ++|++|+||||||||+|.-|
T Consensus 314 R-ef~~~~~~~~p~~~~~~~~----------~~~~~~~w~~~~~~~~~aW~~G~TG~P~VDA~MrqL 369 (538)
T 3tvs_A 314 R-EYFYTMSVNNPNYDRMEGN----------DICLSIPWAKPNENLLQSWRLGQTGFPLIDGAMRQL 369 (538)
T ss_dssp H-HHHHHHHHHSSCTTSSSSC----------SSCCCCCCCCCCSSHHHHHHTTCSSCHHHHHHHHHH
T ss_pred H-HHHHHHHHhCcchhhccCC----------hhhhcCCccccCHHHHHHHHhCCCCCHHHHHHHHHH
Confidence 8 9999999999998766553 3567788876 54 46779999999999999654
No 7
>2j07_A Deoxyribodipyrimidine photo-lyase; flavoprotein, nucleotide-binding, DNA repair; HET: FAD HDF; 1.95A {Thermus thermophilus} SCOP: a.99.1.1 c.28.1.1 PDB: 1iqu_A* 1iqr_A* 2j08_A* 2j09_A*
Probab=100.00 E-value=7.7e-60 Score=467.49 Aligned_cols=298 Identities=20% Similarity=0.238 Sum_probs=244.5
Q ss_pred CcEEEEeeCCCCccCCHHHHHHHHHHhhCCCCEEEEEEcCCCCcCcchhHHHHHHHhHHHHHHHHHHhcCCcEEEEcCCc
Q 017242 29 GPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEA 108 (375)
Q Consensus 29 ~~~l~WfrrDLRl~DN~aL~~A~~~a~~~~~~vl~vfi~dp~~~~~~~~r~~Fl~esL~~L~~~L~~~~g~~L~v~~g~~ 108 (375)
+.+|+|||+|||++||+||.+|++ .+ +|+||||+||.++..+.+|++|+++||++|+++| +++|++|+++.|++
T Consensus 2 ~~~l~WfrrDlRl~Dn~aL~~A~~----~~-~v~~vfi~d~~~~~~~~~r~~fl~~sL~~l~~~L-~~~g~~l~~~~g~~ 75 (420)
T 2j07_A 2 GPLLVWHRGDLRLHDHPALLEALA----RG-PVVGLVVLDPNNLKTTPRRRAWFLENVRALREAY-RARGGALWVLEGLP 75 (420)
T ss_dssp CCEEEEESSCCCSTTCHHHHHHHT----TS-CEEEEEEECHHHHSSCHHHHHHHHHHHHHHHHHH-HHTTCCEEEEESCH
T ss_pred ceEEEEeCCCCCccccHHHHHHHh----CC-CEEEEEEECCccccCCHHHHHHHHHHHHHHHHHH-HHCCCeEEEEeCCH
Confidence 368999999999999999999986 35 9999999998765348999999999999999999 99999999999999
Q ss_pred cchHHHHHHHhCCCEEEEcCCcchHHHHHHHHHHHHcCCCceEEEecCCeeeecccccccCCcchhhhHHHHHhhCCCcC
Q 017242 109 EDNIPNFVRECGASLLVTDFSPLREIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYL 188 (375)
Q Consensus 109 ~~~l~~l~~~~~~~~V~~~~~p~~~~~~rd~~v~~~l~~~i~~~~~~~~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~ 188 (375)
.++|++|+++++|+.|+++.++...+++||++|++.| ||+++++++++|++++. |.+|.+||+|++.+..+ .
T Consensus 76 ~~~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~l--~i~~~~~~~~~l~~~~~---~~~~~~~t~f~k~~~~~---~ 147 (420)
T 2j07_A 76 WEKVPEAARRLKAKAVYALTSHTPYGRYRDGRVREAL--PVPLHLLPAPHLLPPDL---PRAYRVYTPFSRLYRGA---A 147 (420)
T ss_dssp HHHHHHHHHHTTCSEEEEECCCSHHHHHHHHHHHHHC--SSCEEEECCCCSSCTTC---SSCCSSHHHHHTTCCCC---C
T ss_pred HHHHHHHHHHcCCCEEEEecccChhHHHHHHHHHHHc--CCeEEEeCCCEEEccCC---CCccccccHHHHHHhhc---c
Confidence 9999999999999999997666555789999999998 99999999999999987 78899999888765411 1
Q ss_pred CCCCCCCCCCCccCCCCCCCChHHHHHHHHhcCCCCCCcccCCCcHHHHHHHHccchhHHHhhhcCCCCCcCCCCCCCCC
Q 017242 189 IDYPMLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRA 268 (375)
Q Consensus 189 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gGe~~A~~~L~~~~~~Fl~~~l~~Y~~~Rd~p~~~~~ 268 (375)
.|.+. |...+. | ++.. .++........|+|||++|+++| ++|+++++.+|++.||.|+. ++
T Consensus 148 ~p~~~--p~~~~~---p--~~~~-------~l~~~~~~~~~~~~Ge~~A~~~L----~~Fl~~~l~~Y~~~rd~p~~-~~ 208 (420)
T 2j07_A 148 PPLPP--PEALPK---G--PEEG-------EIPREDPGLPLPEPGEEAALAGL----RAFLEAKLPRYAEERDRLDG-EG 208 (420)
T ss_dssp CCCCC--CSSCCC---C--CCCC-------CCCCCCCSSCCCCCSHHHHHHHH----HHHHHHTGGGHHHHTTCTTC-TT
T ss_pred CCCCC--ccccCC---C--Cccc-------cCCCcccccccCCCcHHHHHHHH----HHHHHHHHhhhhhccCCCCc-cC
Confidence 22222 111111 1 1100 01110011234789999999999 99999999999999999987 99
Q ss_pred CccCchhhhcCcccHHHHHHHHHHHhhcCcchHHHHHHHhHHHHHHhhhhhhcCCCCCCCcCchHHHHHhHhhhhcCCcc
Q 017242 269 LSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKRE 348 (375)
Q Consensus 269 tS~LSpyL~~G~IS~R~v~~~~~~~~~~~~~~~~~fl~eL~wRrEf~~~~~~~~P~~~~~~~~~~W~~~~l~~~~~d~~~ 348 (375)
||+|||||+||+||||+|++++.+.. .++.++|++||+|| |||+++++++|++..... +..++.++
T Consensus 209 tS~LSpyL~~G~lSpr~v~~~~~~~~---~~~~~~f~~eL~WR-Ef~~~~~~~~p~~~~~~~----------~~~~~~l~ 274 (420)
T 2j07_A 209 GSRLSPYFALGVLSPRLAAWEAERRG---GEGARKWVAELLWR-DFSYHLLYHFPWMAERPL----------DPRFQAFP 274 (420)
T ss_dssp SCCCHHHHHTTSSCHHHHHHHHHHHC---SHHHHHHHHHHHHH-HHHHHHHHHCGGGGTSCS----------SGGGTTCC
T ss_pred CCCcchhhcCCccCHHHHHHHHHHHh---ccCHHHHHHHHHHH-HHHHHHHHhCCccccccc----------chhhhcCC
Confidence 99999999999999999999998653 46788999999997 999999999999854322 33467789
Q ss_pred cCCCHH---HHhhCCCCchhhhHhhhhh
Q 017242 349 HIYTKE---QFEKAQTADPVSIYLWMFI 373 (375)
Q Consensus 349 w~~~~e---~~~~G~TG~PiVDA~~~~~ 373 (375)
|.++++ .|++|+||||+|||+|.=|
T Consensus 275 w~~d~~~~~~w~~G~TG~P~vDAaMrqL 302 (420)
T 2j07_A 275 WQEDEALFQAWYEGKTGVPLVDAAMREL 302 (420)
T ss_dssp CCCCHHHHHHHHTTCSSCHHHHHHHHHH
T ss_pred cccCHHHHHHHHcCCCCcHhHHHHHHHH
Confidence 998864 5669999999999999654
No 8
>2wq7_A RE11660P; lyase-DNA complex, DNA repair, DNA lesion, lyase; HET: TDY Z FAD; 2.00A {Drosophila melanogaster} PDB: 2wb2_A* 2wq6_A* 3cvu_A* 3cvv_A* 3cvy_A* 3cvw_A* 3cvx_A*
Probab=100.00 E-value=9.3e-60 Score=480.61 Aligned_cols=324 Identities=17% Similarity=0.170 Sum_probs=252.1
Q ss_pred CcEEEEeeCCCCccCCHHHHHHHHHHhh--CCCCEEEEEEcCCCCcC---cchhHHHHHHHhHHHHHHHHHHhcCCcEEE
Q 017242 29 GPVVYWMFRDQRVRDNWALIHAVDQANK--NNVPVAVAFNLFDQFLG---AKARQLGFMLRGLRLLQRNIEETFQILFFL 103 (375)
Q Consensus 29 ~~~l~WfrrDLRl~DN~aL~~A~~~a~~--~~~~vl~vfi~dp~~~~---~~~~r~~Fl~esL~~L~~~L~~~~g~~L~v 103 (375)
..+|+|||+|||++||+||.+|++.+.. .+.||+||||+||.++. .+.+|++||++||++|+++| +++|++|++
T Consensus 29 ~~vl~WfrrDLRl~DN~aL~~A~~~~~~~~~~~pv~~vfi~dp~~~~~~~~~~~r~~Fl~~sL~~L~~~L-~~~G~~L~v 107 (543)
T 2wq7_A 29 STLVHWFRKGLRLHDNPALSHIFTAANAAPGRYFVRPIFILDPGILDWMQVGANRWRFLQQTLEDLDNQL-RKLNSRLFV 107 (543)
T ss_dssp EEEEEEESSCCCSTTCHHHHHHHHHHHHSTTTEEEEEEEEECTTGGGCTTSCHHHHHHHHHHHHHHHHHH-HHTTCCCEE
T ss_pred ceEEEEeCCCcCcchHHHHHHHHHhCccccCCCeEEEEEEECchhhcccCCCHHHHHHHHHHHHHHHHHH-HHCCCeEEE
Confidence 3559999999999999999999986644 35569999999998764 78999999999999999999 999999999
Q ss_pred EcCCccchHHHHHHHhCCCEEEEcCCcchHHHHHHHHHHHHc-CCCceEEEecCCeeeeccccc---ccCCcchhhhHHH
Q 017242 104 FQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICNRV-SDSVTIHEVDAHNVVPVWVAS---EKLEYSAKTLRGK 179 (375)
Q Consensus 104 ~~g~~~~~l~~l~~~~~~~~V~~~~~p~~~~~~rd~~v~~~l-~~~i~~~~~~~~~l~~~~~~~---~~~~~~~~t~~~~ 179 (375)
+.|++.++|.+|+++++|++|+++.++...+++||+.|++.| +.||+++.+++++|++|+.+. .+.+|.+||+|++
T Consensus 108 ~~g~~~~~l~~l~~~~~~~~v~~~~~~~p~~~~rd~~v~~~~~~~gi~~~~~~~~~l~~p~~v~~~~~g~~~~vft~F~~ 187 (543)
T 2wq7_A 108 VRGKPAEVFPRIFKSWRVEMLTFETDIEPYSVTRDAAVQKLAKAEGVRVETHCSHTIYNPELVIAKNLGKAPITYQKFLG 187 (543)
T ss_dssp EESCHHHHHHHHHHHTTEEEEEEECCCSHHHHHHHHHHHHHHHHHTCEEEEECCSSSSCHHHHHHHTTTSCCCSHHHHHH
T ss_pred EeCCHHHHHHHHHHHcCCCEEEEecCcCHHHHHHHHHHHHHHHHcCCEEEEecCCEEECccccccccCCCCCccHHHHHH
Confidence 999999999999999999999996444444678999999998 679999999999999998743 3578899998887
Q ss_pred HHhhCCCcCCCCCCCCCCCCccCCCCCC----------CChHHHHHHHHhcCCCCCCcccCCCcHHHHHHHHccchhHHH
Q 017242 180 INKLLPEYLIDYPMLEQPIEKWTGTRQS----------IDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFL 249 (375)
Q Consensus 180 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~gGe~~A~~~L~~~~~~Fl 249 (375)
.+..+.... |.+. |...+....+.. ..... ...+ .++........|+|||++|+++| ++|+
T Consensus 188 ~~~~~~~~~-p~~~--p~~~~~~~~p~~~~~~~~~~~~~~~p~-l~~l-~~~~~~~~~~~~~~Ge~~A~~~L----~~Fl 258 (543)
T 2wq7_A 188 IVEQLKVPK-VLGV--PEKLKNMPTPPKDEVEQKDSAAYDCPT-MKQL-VKRPEELGPNKFPGGETEALRRM----EESL 258 (543)
T ss_dssp HHTTSCCCC-CCCC--CCCCSSCCCCCCCHHHHHCTTTTSCCC-HHHH-CSCGGGCCCCCSCCSHHHHHHHH----HHHH
T ss_pred HHHHccCCC-CCCc--chhccccccccccccccccccccCCCC-HHHc-CCCccccccCCCCCCHHHHHHHH----HHHH
Confidence 655432111 2221 110000000000 00000 1111 11111111234799999999999 9999
Q ss_pred hhh--cCCCCCcCCCCCC-CCCCccCchhhhcCcccHHHHHHHHHHHhhc---CcchHHHHHHHhHHHHHHhhhhhhcCC
Q 017242 250 TKR--LKNYPTDRNNPLK-PRALSGLSPYLHFGQISAQRCALEARKARKL---CPEAIDTFLEELIVRRELADNFCFYQP 323 (375)
Q Consensus 250 ~~~--l~~Y~~~Rd~p~~-~~~tS~LSpyL~~G~IS~R~v~~~~~~~~~~---~~~~~~~fl~eL~wRrEf~~~~~~~~P 323 (375)
+++ +.+|++.||.|+. .++||+|||||+||+||||+|++++.+.... ..++.++|++||+|| |||+++++++|
T Consensus 259 ~~~~~l~~Y~~~Rd~p~~~~~~tS~LSPyL~~G~LSpR~v~~~~~~~~~~~~~~~~~~~~f~~eL~WR-Ef~~~~~~~~P 337 (543)
T 2wq7_A 259 KDEIWVARFEKPNTAPNSLEPSTTVLSPYLKFGCLSARLFNQKLKEIIKRQPKHSQPPVSLIGQLMWR-EFYYTVAAAEP 337 (543)
T ss_dssp TCHHHHHHCCGGGSCSSCSSCSSCCCHHHHHHTSSCHHHHHHHHHHHHHHCSSCCCTTTSHHHHHHHH-HHHHHHHHTCT
T ss_pred hCChhhhhhcccccCccccccCCCCcCHhHhCCCCCHHHHHHHHHHHHhccccccccHHHHHHHHHHH-HHHHHHHHhCC
Confidence 999 9999999999974 4899999999999999999999999864322 345677899999998 99999999999
Q ss_pred CCCCCcCchHHHHHhHhhhhcCCcccCCCHH---HHhhCCCCchhhhHhhhhh
Q 017242 324 NYDSLKGAWEWARKSLKDHASDKREHIYTKE---QFEKAQTADPVSIYLWMFI 373 (375)
Q Consensus 324 ~~~~~~~~~~W~~~~l~~~~~d~~~w~~~~e---~~~~G~TG~PiVDA~~~~~ 373 (375)
+++.....+ .++.++|..+.+ +|++|+||||||||+|.=|
T Consensus 338 ~~~~~~~~~----------~~~~~~w~~~~~~~~aW~~G~TG~P~VDAaMrqL 380 (543)
T 2wq7_A 338 NFDRMLGNV----------YCMQIPWQEHPDHLEAWTHGRTGYPFIDAIMRQL 380 (543)
T ss_dssp TTTSSTTCT----------TCCCCCCCCCHHHHHHHHTTCSSCHHHHHHHHHH
T ss_pred ccccccCCh----------HhhcCCCccCHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 998765543 577889988765 5669999999999999654
No 9
>2e0i_A 432AA long hypothetical deoxyribodipyrimidine PHO; photolyase, FAD, DNA repair, lyase; HET: FAD; 2.80A {Sulfolobus tokodaii}
Probab=100.00 E-value=2.3e-60 Score=472.69 Aligned_cols=289 Identities=16% Similarity=0.112 Sum_probs=237.1
Q ss_pred EEEEeeCCCCccCCHHHHHHHHHHhhCCCCEEEEEEcCCCCcC----cchhHHHHHHHhHHHHHHHHHHhcCCcEEEEcC
Q 017242 31 VVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLG----AKARQLGFMLRGLRLLQRNIEETFQILFFLFQG 106 (375)
Q Consensus 31 ~l~WfrrDLRl~DN~aL~~A~~~a~~~~~~vl~vfi~dp~~~~----~~~~r~~Fl~esL~~L~~~L~~~~g~~L~v~~g 106 (375)
+|||||||||++||+||.+|++. +.+|+||||+||.++. .+.+|++||++||++|+++| +++|++|+++.|
T Consensus 3 ~l~WfrrDLRl~DN~aL~~A~~~----~~~v~~vfi~dp~~~~~~~~~~~~r~~Fl~~sL~~L~~~L-~~~G~~L~v~~g 77 (440)
T 2e0i_A 3 CIFIFRRDLRLEDNTGLNYALSE----CDRVIPVFIADPRQLINNPYKSEFAVSFMINSLLELDDEL-RKKGSRLNVFFG 77 (440)
T ss_dssp EEEEESSCCCSSSCHHHHHHHHH----SSEEEEEEEECHHHHSSCTTCCHHHHHHHHHHHHHHHHHH-HTTTCCCEEEES
T ss_pred EEEEeCCCCccchhHHHHHHHhc----CCCEEEEEEeChhhhccCCcCCHHHHHHHHHHHHHHHHHH-HHcCCeEEEEEC
Confidence 79999999999999999999973 6799999999997643 78999999999999999999 999999999999
Q ss_pred CccchHHHHHHHhCCCEEEEcCCcchHHHHHHHHHHHHc-CCCceEEEecCCeeeecccccccCCcchhhhHHHHHhhC-
Q 017242 107 EAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICNRV-SDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLL- 184 (375)
Q Consensus 107 ~~~~~l~~l~~~~~~~~V~~~~~p~~~~~~rd~~v~~~l-~~~i~~~~~~~~~l~~~~~~~~~~~~~~~t~~~~~~~~~- 184 (375)
++.++|++|++ +|+.|+++.++...+++||++|++.| +.||+++++++++|++|+.+ +|++||+|++.+...
T Consensus 78 ~~~~~l~~l~~--~~~~v~~~~~~~~~~~~rd~~v~~~l~~~gi~~~~~~~~~l~~~~~~----~y~vftpf~~~~~~~~ 151 (440)
T 2e0i_A 78 EAEKVVSRFFN--KVDAIYVNEDYTPFSISRDEKIRKVCEENGIEFKAYEDYLLTPKSLF----HHRNFTSFYNEVSKVK 151 (440)
T ss_dssp CHHHHHHHHCT--TCSEEEEECCCSHHHHHHHHHHHHHHHTTTCEEEEECCSCSSCGGGC----CCSSHHHHHHHHTTSC
T ss_pred CHHHHHHHHHc--CCCEEEEecccChHHHHHHHHHHHHHHHcCceEEEecCCEEEccccc----CcccCcHHHHHHHHhc
Confidence 99999999999 99999997666555789999999999 78999999999999999987 799999777655432
Q ss_pred -CCcCCCCCCCCCCCCccCCCCCCCChHHHHHHHHhcCCCCCCcccCCCcHHHHHHHHccchhHHHhhhcCCCCCcCCCC
Q 017242 185 -PEYLIDYPMLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNP 263 (375)
Q Consensus 185 -~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gGe~~A~~~L~~~~~~Fl~~~l~~Y~~~Rd~p 263 (375)
..+..+.|. +...+. +. .+.++ + . ....++|||++|+++| + |+++++.+| +.||.|
T Consensus 152 ~~~p~~~~~~--~~~~~~---p~--~~~~l-p---~------~~~~~~~Ge~~A~~~L----~-Fl~~~l~~Y-~~rd~p 208 (440)
T 2e0i_A 152 VREPETMEGS--FDVTDS---SM--NVDFL-L---T------FKKIESPLFRGGRREG----L-YLLHRNVDF-RRRDYP 208 (440)
T ss_dssp CCCCCCCCCC--BCCCSS---SB--CGGGG-G---G------TCCCCCTTCCCSHHHH----H-HHHTCCCCG-GGTTCT
T ss_pred ccccccCCCC--cccCCC---cc--hhhhC-C---c------cccCCCCCHHHHHHHH----H-HHHhhhhcC-CcCCCc
Confidence 110111111 111111 11 11111 0 1 1124689999999999 9 999999999 999999
Q ss_pred CCCCCCccCchhhhcCcccHHHHHHHHHHHhhcCcchHHHHHHHhHHHHHHhhhhhhcCCCCCCCcCchHHHHHhHhhhh
Q 017242 264 LKPRALSGLSPYLHFGQISAQRCALEARKARKLCPEAIDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHA 343 (375)
Q Consensus 264 ~~~~~tS~LSpyL~~G~IS~R~v~~~~~~~~~~~~~~~~~fl~eL~wRrEf~~~~~~~~P~~~~~~~~~~W~~~~l~~~~ 343 (375)
+. ++||+|||||+||+||||+|++++ ++.++|++||+|| |||+++++++|++..... +..
T Consensus 209 ~~-~~tS~LSPyL~~G~lSpr~v~~~~--------~~~~~fl~eL~WR-Ef~~~~~~~~P~~~~~~~----------~~~ 268 (440)
T 2e0i_A 209 AE-NNNYRLSPHLKFGTISMREAYYTQ--------KGKEEFVRELYWR-DFFTLLAYYNPHVFGHCY----------RRE 268 (440)
T ss_dssp TT-TCCCCCHHHHHTTSSCHHHHHHHS--------TTCHHHHHHHHHH-HHHHHHHHHCGGGTTSCS----------SGG
T ss_pred cc-cCCCCccHhHhCCCCCHHHHHHHh--------cCHHHHHHHHHHH-HHHHHHHHhCCCcccccc----------chh
Confidence 87 999999999999999999999987 3567999999998 999999999999865422 335
Q ss_pred cCCcccCCCHHH---HhhCCCCchhhhHhhhhh
Q 017242 344 SDKREHIYTKEQ---FEKAQTADPVSIYLWMFI 373 (375)
Q Consensus 344 ~d~~~w~~~~e~---~~~G~TG~PiVDA~~~~~ 373 (375)
++.++|.++++. |++|+||||||||+|.=|
T Consensus 269 ~~~l~W~~d~~~~~aW~~G~TG~P~vDAaMrqL 301 (440)
T 2e0i_A 269 YDNISWENNESYFEAWKEGRTGYPIIDAGMRML 301 (440)
T ss_dssp GGGCCCCCCHHHHHHHHHTCSSCHHHHHHHHHH
T ss_pred hhcCCcccchHHHHHHHhCCCCCHHHHHHHHHH
Confidence 667899988654 569999999999999644
No 10
>1np7_A DNA photolyase; protein with FAD cofactor; HET: DNA FAD; 1.90A {Synechocystis SP} SCOP: a.99.1.1 c.28.1.1
Probab=100.00 E-value=8.2e-60 Score=476.40 Aligned_cols=318 Identities=13% Similarity=0.084 Sum_probs=248.5
Q ss_pred CCcEEEEeeCCCCccCCHHHHHHHHHHhhCCCCEEEEEEcCCCCc--------CcchhHHHHHHHhHHHHHHHHHHhcCC
Q 017242 28 RGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFL--------GAKARQLGFMLRGLRLLQRNIEETFQI 99 (375)
Q Consensus 28 ~~~~l~WfrrDLRl~DN~aL~~A~~~a~~~~~~vl~vfi~dp~~~--------~~~~~r~~Fl~esL~~L~~~L~~~~g~ 99 (375)
++++|+|||+|||++||+||.+|++ .+.+|+||||+||.++ ..+.+|++||++||++|+++| +++|+
T Consensus 5 ~~~~l~WfrrDLRl~DN~aL~~A~~----~~~~v~~vfi~dp~~~~~~~~~~~~~~~~r~~Fl~~sL~~L~~~L-~~~G~ 79 (489)
T 1np7_A 5 PPTVLVWFRNDLRLHDHEPLHRALK----SGLAITAVYCYDPRQFAQTHQGFAKTGPWRSNFLQQSVQNLAESL-QKVGN 79 (489)
T ss_dssp CCEEEEEESSCCCSTTCHHHHHHHH----TTSEEEEEEEECGGGGSBCTTSCBSSCHHHHHHHHHHHHHHHHHH-HHTTC
T ss_pred CCcEEEEeCCCCCcchHHHHHHHHh----cCCCEEEEEEECchhhcccccccCCCCHHHHHHHHHHHHHHHHHH-HHCCC
Confidence 3578999999999999999999987 4679999999999754 378999999999999999999 99999
Q ss_pred cEEEEcCCccchHHHHHHHhCCCEEEEcCCcchHHHHHHHHHHHHc-CCCceEEEecCCeeeecccccc--cCCcchhhh
Q 017242 100 LFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICNRV-SDSVTIHEVDAHNVVPVWVASE--KLEYSAKTL 176 (375)
Q Consensus 100 ~L~v~~g~~~~~l~~l~~~~~~~~V~~~~~p~~~~~~rd~~v~~~l-~~~i~~~~~~~~~l~~~~~~~~--~~~~~~~t~ 176 (375)
+|+++.|++.++|++|+++++|++|+++.++...+++||++|++.| +.||+++++++++|++|+++.+ +.+|.+||+
T Consensus 80 ~L~v~~g~~~~~l~~l~~~~~~~~V~~~~~~~~~~~~rd~~v~~~l~~~gi~~~~~~~~~l~~~~~~~~~~g~~~~vft~ 159 (489)
T 1np7_A 80 KLLVTTGLPEQVIPQIAKQINAKTIYYHREVTQEELDVERNLVKQLTILGIEAKGYWGSTLCHPEDLPFSIQDLPDLFTK 159 (489)
T ss_dssp CEEEEESCHHHHHHHHHHHTTEEEEEEECCCSHHHHHHHHHHHHHHHHHTCEEEEECCSSSSCGGGSSSCGGGCCSSHHH
T ss_pred cEEEEECCHHHHHHHHHHHcCCCEEEEecccCHHHHHHHHHHHHHHHhcCCeEEEecCCeeeCccccccCCCCCCchHHH
Confidence 9999999999999999999999999998766666789999999998 6799999999999999998764 568999998
Q ss_pred HHHHHh-hCCCcCCCCCCCCCCCC-ccC--CCCCCCChHHHHHHHHhcCC---CCCCcccCCCcHHHHHHHHccchhHHH
Q 017242 177 RGKINK-LLPEYLIDYPMLEQPIE-KWT--GTRQSIDWDSIIAAVLRKGA---EVPEIGWCESGEDAAMEVLKGSKDGFL 249 (375)
Q Consensus 177 ~~~~~~-~~~~~~~~~p~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~gGe~~A~~~L~~~~~~Fl 249 (375)
|++.+. .......|.|. |... +.+ ..+..++ .+..++. .......|+|||++|+++| ++|+
T Consensus 160 F~~~~~~~~~~~~~p~~~--p~~~~~~~~~~~~~~~~------~~~~l~~~~~~~~~~~~~~~Ge~~A~~~L----~~Fl 227 (489)
T 1np7_A 160 FRKDIEKKKISIRPCFFA--PSQLLPSPNIKLELTAP------PPEFFPQINFDHRSVLAFQGGETAGLARL----QDYF 227 (489)
T ss_dssp HHHHHHTTTCCCCCCCCC--CSCCCCCCCCCCCCCCC------CGGGSCCCCCCTTSSCCCCCSHHHHHHHH----HHHH
T ss_pred HHHHHHHhccCCCCCCCC--cccccCccccccccCCC------CHhhcCCCCcCccccCCCCCcHHHHHHHH----HHHH
Confidence 777554 21111122222 1110 000 0001111 0111111 1112235799999999999 9999
Q ss_pred --hhhcCCCCCcCCCCCCCCCCccCchhhhcCcccHHHHHHHHHHHhhc--CcchHHHHHHHhHHHHHHhhhhhhcCCCC
Q 017242 250 --TKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKL--CPEAIDTFLEELIVRRELADNFCFYQPNY 325 (375)
Q Consensus 250 --~~~l~~Y~~~Rd~p~~~~~tS~LSpyL~~G~IS~R~v~~~~~~~~~~--~~~~~~~fl~eL~wRrEf~~~~~~~~P~~ 325 (375)
++++.+|++.||.|...++||+|||||+||+||||+|++++.+.... ..++.+.|++||+|| |||+++++++|++
T Consensus 228 ~~~~~l~~Y~~~Rd~~~~~~~tS~LSpyL~~G~lSpr~v~~~~~~~~~~~~~~~~~~~f~~eL~WR-ef~~~~~~~~p~~ 306 (489)
T 1np7_A 228 WHGDRLKDYKETRNGMVGADYSSKFSPWLALGCLSPRFIYQEVKRYEQERVSNDSTHWLIFELLWR-DFFRFVAQKYGNK 306 (489)
T ss_dssp TTSCCGGGHHHHTTCCSSSTTSCCCHHHHHTTSSCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHH-HHHHHHHHHHGGG
T ss_pred hcchhHhhhhhcccCCccccCCcCcChhhcCCCCCHHHHHHHHHHHhhcccccchHHHHHHHHHHH-HHHHHHHHHCcch
Confidence 57899999999988534899999999999999999999999874322 234566799999998 9999999999987
Q ss_pred CCCcCchHHHHHhHhhhhcCCcccCCCHH---HHhhCCCCchhhhHhhhhh
Q 017242 326 DSLKGAWEWARKSLKDHASDKREHIYTKE---QFEKAQTADPVSIYLWMFI 373 (375)
Q Consensus 326 ~~~~~~~~W~~~~l~~~~~d~~~w~~~~e---~~~~G~TG~PiVDA~~~~~ 373 (375)
......+ .++.++|.++.+ +|++|+||||||||+|.=|
T Consensus 307 ~~~~~~~----------~~~~~~W~~d~~~~~aW~~G~TG~P~vDAaMrqL 347 (489)
T 1np7_A 307 LFNRGGL----------LNKNFPWQEDQVRFELWRSGQTGYPLVDANMREL 347 (489)
T ss_dssp GGSTTTT----------TTCCCCCBCCHHHHHHHHTTCSSCHHHHHHHHHH
T ss_pred hhhhcCc----------ccccCCCccCHHHHHHHHcCCCCChhHHHHHHHH
Confidence 5433322 356789988865 4569999999999999654
No 11
>1u3d_A Cryptochrome 1 apoprotein; photolyase, AMPPNP, signaling protein; HET: FAD ANP NDS; 2.45A {Arabidopsis thaliana} SCOP: a.99.1.1 c.28.1.1 PDB: 1u3c_A*
Probab=100.00 E-value=4e-58 Score=465.94 Aligned_cols=318 Identities=17% Similarity=0.187 Sum_probs=239.4
Q ss_pred CCCCcEEEEeeCCCCccCCHHHHHHHHHHhhCCCCEEEEEEcCCCCcC---cchhHHHHHHHhHHHHHHHHHHhcCCcEE
Q 017242 26 KKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLG---AKARQLGFMLRGLRLLQRNIEETFQILFF 102 (375)
Q Consensus 26 ~~~~~~l~WfrrDLRl~DN~aL~~A~~~a~~~~~~vl~vfi~dp~~~~---~~~~r~~Fl~esL~~L~~~L~~~~g~~L~ 102 (375)
..++.+|+|||+|||++||+||.+|++. + +|+||||+||.++. .+..+..||++||++|+++| +++|++|+
T Consensus 9 ~~~~~~l~WfrrDLRl~DN~aL~~A~~~----~-~v~pvfi~dp~~~~~~~~~~~~~~fl~~sL~~L~~~L-~~~G~~L~ 82 (509)
T 1u3d_A 9 GSGGCSIVWFRRDLRVEDNPALAAAVRA----G-PVIALFVWAPEEEGHYHPGRVSRWWLKNSLAQLDSSL-RSLGTCLI 82 (509)
T ss_dssp ----CEEEEESSCCCSTTCHHHHHHHHH----S-CEEEEEEECGGGGTTCCCCHHHHHHHHHHHHHHHHHH-HHTTCCEE
T ss_pred CCCCcEEEEECCCCccchhHHHHHHHhC----C-CEEEEEEECchhcccCCcchHHHHHHHHHHHHHHHHH-HHCCCeEE
Confidence 3467889999999999999999999973 3 89999999998643 35667779999999999999 99999999
Q ss_pred EEc-CCccchHHHHHHHhCCCEEEEc--CCcchHHHHHHHHHHHHc-CCCceEEEecCCeeeecccccc--cCCcchhhh
Q 017242 103 LFQ-GEAEDNIPNFVRECGASLLVTD--FSPLREIRRCKDKICNRV-SDSVTIHEVDAHNVVPVWVASE--KLEYSAKTL 176 (375)
Q Consensus 103 v~~-g~~~~~l~~l~~~~~~~~V~~~--~~p~~~~~~rd~~v~~~l-~~~i~~~~~~~~~l~~~~~~~~--~~~~~~~t~ 176 (375)
++. |++.++|++|+++++|++|+++ ++|. +++||++|++.| +.||+++++++++|++|+.+.+ +.+|.+||+
T Consensus 83 v~~~g~~~~~l~~l~~~~~~~~V~~~~~~~p~--~~~rd~~v~~~l~~~gi~~~~~~~~~l~~p~~v~~~~g~~~~vftp 160 (509)
T 1u3d_A 83 TKRSTDSVASLLDVVKSTGASQIFFNHLYDPL--SLVRDHRAKDVLTAQGIAVRSFNADLLYEPWEVTDELGRPFSMFAA 160 (509)
T ss_dssp EEECSCHHHHHHHHHHHHTCCEEEEECCCSHH--HHHHHHHHHHHHHTTTCEEEEECCSCSSCGGGCCCSSSCCCSSHHH
T ss_pred EEeCCCHHHHHHHHHHHcCCCEEEEecccCHH--HHHHHHHHHHHHHHcCcEEEEECCCEEEcCCcccCCCCCCchhHHH
Confidence 998 6899999999999999999996 5555 679999999999 7899999999999999998764 467888887
Q ss_pred HHHHHhhCC-CcCCCCCCCCCCCCccCC--C--CCCCChHHHHHHHHhcCCCCCCcccCCCcHHHHHHHHccchhHHHhh
Q 017242 177 RGKINKLLP-EYLIDYPMLEQPIEKWTG--T--RQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTK 251 (375)
Q Consensus 177 ~~~~~~~~~-~~~~~~p~~~~~~~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~~~gGe~~A~~~L~~~~~~Fl~~ 251 (375)
|++.+.... .+..+.+. |...+.+. . ...+........ .. ... ....|+|||++|+++| ++|+++
T Consensus 161 f~r~~~~~~~~~~~~~~~--p~~~~~~~~~~~~~~~l~~~~~~~~--~~-~~~-~~~~~~~Ge~~A~~~L----~~Fl~~ 230 (509)
T 1u3d_A 161 FWERCLSMPYDPESPLLP--PKKIISGDVSKCVADPLVFEDDSEK--GS-NAL-LARAWSPGWSNGDKAL----TTFING 230 (509)
T ss_dssp HHHHHHTCSSCCCCCCCC--CSCCCBTTGGGSSCCCCCCCCHHHH--HH-HTT-HHHHCCCSHHHHHHHH----HHHHTT
T ss_pred HHHHHHhccCCCCCCCCC--ccccCccccCCCChhHhCCCccccc--ch-hhh-ccccCCCcHHHHHHHH----HHHHHH
Confidence 776543221 11111111 11000000 0 000000000000 00 000 0013689999999999 999999
Q ss_pred hcCCCCCcCCCCCCCCCCccCchhhhcCcccHHHHHHHHHHHh-----hc---CcchHHHHHHHhHHHHHHhhhhhhcCC
Q 017242 252 RLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKAR-----KL---CPEAIDTFLEELIVRRELADNFCFYQP 323 (375)
Q Consensus 252 ~l~~Y~~~Rd~p~~~~~tS~LSpyL~~G~IS~R~v~~~~~~~~-----~~---~~~~~~~fl~eL~wRrEf~~~~~~~~P 323 (375)
++.+|+++||.|+. ++||+|||||+||+||||+|++++.+.. .. ..++.++|++||+|| |||+++++++|
T Consensus 231 ~l~~Y~~~Rd~p~~-~~tS~LSPyL~~G~LSpR~v~~~~~~~~~~~~~~~~~~~~~s~~~fl~eL~WR-Ef~~~~~~~~p 308 (509)
T 1u3d_A 231 PLLEYSKNRRKADS-ATTSFLSPHLHFGEVSVRKVFHLVRIKQVAWANEGNEAGEESVNLFLKSIGLR-EYSRYISFNHP 308 (509)
T ss_dssp GGGGTTTTTTCSSS-TTSCCCHHHHHTTSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH-HHHHHHHHSST
T ss_pred HHHhhhhccCCCCC-CCCCCCChhhccCCCCHHHHHHHHHHHhhhhcccccccccchHHHHHHHHHHH-HHHHHHHHhCc
Confidence 99999999999988 8999999999999999999999987642 11 124567899999997 99999999999
Q ss_pred CCCCCcCchHHHHHhHhhhhcCCcccCCCHH---HHhhCCCCchhhhHhhhhh
Q 017242 324 NYDSLKGAWEWARKSLKDHASDKREHIYTKE---QFEKAQTADPVSIYLWMFI 373 (375)
Q Consensus 324 ~~~~~~~~~~W~~~~l~~~~~d~~~w~~~~e---~~~~G~TG~PiVDA~~~~~ 373 (375)
++... ++ ...++.++|.++++ .|++|+||||||||+|.=|
T Consensus 309 ~~~~~--~~--------~~~~~~lpW~~d~~~~~aW~~G~TG~P~VDAaMrqL 351 (509)
T 1u3d_A 309 YSHER--PL--------LGHLKFFPWAVDENYFKAWRQGRTGYPLVDAGMREL 351 (509)
T ss_dssp TTTTS--CS--------CCTTTTCCCCCCHHHHHHHHHTCSSCHHHHHHHHHH
T ss_pred ccccc--ch--------hhhhccCCCcCChHHHHHHHcCCCCCHhHHHHHHHH
Confidence 86432 21 23466788999875 4669999999999999654
No 12
>2j4d_A Cryptochrome 3, cryptochrome DASH; DNA-binding protein, flavoprotein, FAD, mitochondrion, plastid, chromophore, chloroplast; HET: FAD MHF; 1.9A {Arabidopsis thaliana} PDB: 2vtb_A* 2ijg_X* 2vtb_B*
Probab=100.00 E-value=1.4e-57 Score=462.87 Aligned_cols=318 Identities=18% Similarity=0.137 Sum_probs=244.6
Q ss_pred CCcEEEEeeCCCCccCCHHHHHHHHHHhhCCCCEEEEEEcCCCCc---------CcchhHHHHHHHhHHHHHHHHHHhcC
Q 017242 28 RGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFL---------GAKARQLGFMLRGLRLLQRNIEETFQ 98 (375)
Q Consensus 28 ~~~~l~WfrrDLRl~DN~aL~~A~~~a~~~~~~vl~vfi~dp~~~---------~~~~~r~~Fl~esL~~L~~~L~~~~g 98 (375)
++++|+|||+|||++||+||.+|++ .+.+|+||||+||.++ ..+.+|++||++||++|+++| +++|
T Consensus 39 ~~~~l~WfrrDLRl~DN~AL~~A~~----~~~~v~~vfi~dp~~~~~~~~~~~~~~~~~r~~Fl~~sL~~L~~~L-~~~G 113 (525)
T 2j4d_A 39 KGVTILWFRNDLRVLDNDALYKAWS----SSDTILPVYCLDPRLFHTTHFFNFPKTGALRGGFLMECLVDLRKNL-MKRG 113 (525)
T ss_dssp CCEEEEEESSCCCSTTCHHHHHHHH----TCSEEEEEEEECGGGGSBCTTTCCBSSCHHHHHHHHHHHHHHHHHH-HHTT
T ss_pred CCeEEEEeCCCcCcchhHHHHHHHh----cCCcEEEEEEECchhhcccccccCCCCCHHHHHHHHHHHHHHHHHH-HHcC
Confidence 5678999999999999999999987 4568999999999754 368999999999999999999 9999
Q ss_pred CcEEEEcCCccchHHHHHHHhCCCEEEEcCCcchHHHHHHHHHHHHc-CCC--ceEEEecCCeeeecccccc--cCCcch
Q 017242 99 ILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICNRV-SDS--VTIHEVDAHNVVPVWVASE--KLEYSA 173 (375)
Q Consensus 99 ~~L~v~~g~~~~~l~~l~~~~~~~~V~~~~~p~~~~~~rd~~v~~~l-~~~--i~~~~~~~~~l~~~~~~~~--~~~~~~ 173 (375)
++|+++.|++.++|++|+++++|++|+++.++...+++||++|++.| +.| |+++++++++|++|+++.+ +.+|.+
T Consensus 114 ~~L~v~~g~~~~~l~~l~~~~~~~~V~~~~~~~p~~~~rd~~v~~~l~~~gv~i~~~~~~~~~L~~p~~v~~~~g~~~~v 193 (525)
T 2j4d_A 114 LNLLIRSGKPEEILPSLAKDFGARTVFAHKETCSEEVDVERLVNQGLKRVGNSTKLELIWGSTMYHKDDLPFDVFDLPDV 193 (525)
T ss_dssp CCCEEEESCHHHHHHHHHHHHTCSEEEEECCCSHHHHHHHHHHHHHHHTTCSSCEEEEECCSCSSCGGGSSSCGGGCCSS
T ss_pred CeEEEEeCCHHHHHHHHHHHcCCCEEEEeccCCHHHHHHHHHHHHHHHhcCCceEEEEecCCEEEccccccccCCCCccc
Confidence 99999999999999999999999999997666666889999999999 778 8999999999999998864 467888
Q ss_pred hhhHHHHH-hhCCCcCCCCCCCCCCCCccCC---CCCCCChHHHHHHHHhcCCC-CCCcccCCCcHHHHHHHHccchhHH
Q 017242 174 KTLRGKIN-KLLPEYLIDYPMLEQPIEKWTG---TRQSIDWDSIIAAVLRKGAE-VPEIGWCESGEDAAMEVLKGSKDGF 248 (375)
Q Consensus 174 ~t~~~~~~-~~~~~~~~~~p~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~-~~~~~~~~gGe~~A~~~L~~~~~~F 248 (375)
||+|++.+ +.+. ...|.|. |...+... ....+.. + ..+ .+... ......|+|||++|+++| ++|
T Consensus 194 ft~F~r~~~~~~~-~~~p~~~--p~~~~~~~~~~~~~~~~~--l-~~l-~~~~~~~~~~~~~~~Ge~~A~~~L----~~F 262 (525)
T 2j4d_A 194 YTQFRKSVEAKCS-IRSSTRI--PLSLGPTPSVDDWGDVPT--L-EKL-GVEPQEVTRGMRFVGGESAGVGRV----FEY 262 (525)
T ss_dssp HHHHHHHHHHHCC-CCCCCCB--CSCCCCCCCCSCCCCCCC--T-TTT-TCCCCCCCSEEEECCSHHHHHHHH----HHH
T ss_pred HHHHHHHHHHhcC-CCCCCCC--ccccCCccccccccCCCC--H-HHc-CCCcccccccCCCCCcHHHHHHHH----HHH
Confidence 88776644 4332 1222222 11111000 0000110 0 000 01110 111234789999999999 999
Q ss_pred H-h-hhcCCCCCcCCCCCCCCCCccCchhhhcCcccHHHHHHHHHHHhhc--CcchHHHHHHHhHHHHHHhhhhhhcC-C
Q 017242 249 L-T-KRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKL--CPEAIDTFLEELIVRRELADNFCFYQ-P 323 (375)
Q Consensus 249 l-~-~~l~~Y~~~Rd~p~~~~~tS~LSpyL~~G~IS~R~v~~~~~~~~~~--~~~~~~~fl~eL~wRrEf~~~~~~~~-P 323 (375)
+ + +++.+|++.||.|...++||+|||||+||+||||+|++++.++... ..++.+.|++||+|| |||+++++++ |
T Consensus 263 l~~~~~l~~Y~~~Rd~~~~~~~tS~LSPyL~~G~LSpR~v~~~~~~~~~~~~~~~~~~~f~~EL~WR-Ef~~~~~~~~~~ 341 (525)
T 2j4d_A 263 FWKKDLLKVYKETRNGMLGPDYSTKFSPWLAFGCISPRFIYEEVQRYEKERVANNSTYWVLFELIWR-DYFRFLSIKCGN 341 (525)
T ss_dssp HTTSCCGGGHHHHTTCCSSSTTSCCCHHHHHTTSSCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHH-HHHHHHHHHHGG
T ss_pred HhhCchHhhhcccCCCccccccCCCcChhhcCCcCCHHHHHHHHHHHhhcccccccHHHHHHHHHHH-HHHHHHHHHcCc
Confidence 9 6 5799999999987333999999999999999999999999865432 234456799999998 9999998866 5
Q ss_pred CCCCCcCchHHHHHhHhhhhcCCcccCCCH---HHHhhCCCCchhhhHhhhhh
Q 017242 324 NYDSLKGAWEWARKSLKDHASDKREHIYTK---EQFEKAQTADPVSIYLWMFI 373 (375)
Q Consensus 324 ~~~~~~~~~~W~~~~l~~~~~d~~~w~~~~---e~~~~G~TG~PiVDA~~~~~ 373 (375)
.++...+.. .+.++|.++. +.|++|+||||||||+|.=|
T Consensus 342 ~~~~~~~~~-----------~~~~~w~~~~~~~~aW~~G~TG~P~VDAaMrqL 383 (525)
T 2j4d_A 342 SLFHLGGPR-----------NVQGKWSQDQKLFESWRDAKTGYPLIDANMKEL 383 (525)
T ss_dssp GGTSTTTTT-----------TCCCCCBCCHHHHHHHHTTCSSCHHHHHHHHHH
T ss_pred hhhhccCch-----------hhcCCCCCCHHHHHHHHcCCCCChHHHHHHHHH
Confidence 555544432 3567898875 45679999999999999754
No 13
>3zxs_A Cryptochrome B, rscryb; lyase, cryPro, lumazine, iron-sulfur-cluster; HET: FAD DLZ; 2.70A {Rhodobacter sphaeroides}
Probab=100.00 E-value=2.3e-38 Score=315.60 Aligned_cols=310 Identities=12% Similarity=0.080 Sum_probs=217.4
Q ss_pred cEEEEeeCCCCccCCHHHHHHHHHHhhCCCCEEEEEEcC-CCCcCcchhHHHHHHHhHHHHHHHHHHhcCCcEEEEc---
Q 017242 30 PVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLF-DQFLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQ--- 105 (375)
Q Consensus 30 ~~l~WfrrDLRl~DN~aL~~A~~~a~~~~~~vl~vfi~d-p~~~~~~~~r~~Fl~esL~~L~~~L~~~~g~~L~v~~--- 105 (375)
+++.|.--|.-..++++|..+-. ....|+.+-+.. ..+...+.+|+.|++.||++++++| ++.|.+|+++.
T Consensus 16 ~~~~~ilgdQL~~~~~~~~~~~~----~~~~~~~~E~~~~~~~~~~h~~Ki~~l~saMr~fa~~L-~~~G~~v~y~~~~~ 90 (522)
T 3zxs_A 16 TRLILVLGDQLSDDLPALRAADP----AADLVVMAEVMEEGTYVPHHPQKIALILAAMRKFARRL-QERGFRVAYSRLDD 90 (522)
T ss_dssp CCEEECCTTCCCTTCHHHHTCCT----TTCEEEEECCHHHHHSSCCCHHHHHHHHHHHHHHHHHH-HHTTCCEEEECTTC
T ss_pred heeEEeecccCCCccchhhhcCC----CCCEEEEEEechHhccCCcHHHHHHHHHHHHHHHHHHH-HhCCCeEEEEeccC
Confidence 35899999999999999975411 112232222221 1134578999999999999999999 99999999988
Q ss_pred ----CCccchHHHHHHHhCCCEEEEcCCcchHHHHHHHHHHHHcCCCceEEEecCC-eeeeccccc----ccCCcchhhh
Q 017242 106 ----GEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICNRVSDSVTIHEVDAH-NVVPVWVAS----EKLEYSAKTL 176 (375)
Q Consensus 106 ----g~~~~~l~~l~~~~~~~~V~~~~~p~~~~~~rd~~v~~~l~~~i~~~~~~~~-~l~~~~~~~----~~~~~~~~t~ 176 (375)
|++.++|++++++++++.|++. +|. +++++++|++. ||++..+++. .|++|+++. .+++|.+..|
T Consensus 91 ~~~~g~~~~~L~~l~~~~~~~~v~~~-~P~--e~r~~~~l~~~---gi~v~~~~~~~fL~~~~e~~~~~~~~k~~~me~F 164 (522)
T 3zxs_A 91 PDTGPSIGAELLRRAAETGAREAVAT-RPG--DWRLIEALEAM---PLPVRFLPDDRFLCPADEFARWTEGRKQLRMEWF 164 (522)
T ss_dssp TTCCSSHHHHHHHHHHHHTCCCEEEE-CCS--CHHHHHHHHHS---SSCEEEECCCCSSSCHHHHHHHHTTCSSCCHHHH
T ss_pred ccccCCHHHHHHHHHHHcCCCEEEEe-Ccc--hHHHHHHHHHc---CCcEEEeCCCCcccCHHHHHHhhcCCCCeEeeHH
Confidence 8889999999999999999998 776 45778888754 8999999986 688998875 3578999766
Q ss_pred HHHHHhhCCCcCC-----------------CCCCCCCCCCccCCCCCCCCh-HHHHHHHHhc-CCCC--CCcccCCCcHH
Q 017242 177 RGKINKLLPEYLI-----------------DYPMLEQPIEKWTGTRQSIDW-DSIIAAVLRK-GAEV--PEIGWCESGED 235 (375)
Q Consensus 177 ~~~~~~~~~~~~~-----------------~~p~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~--~~~~~~~gGe~ 235 (375)
++.+.+.....+. +.|.. ...|.+..+.+-.. .++.+.+... +... .....|++||+
T Consensus 165 YR~~Rkr~~iLm~~~~P~GG~WnfD~~NRk~~p~~--~~~p~~~~~~~d~~~~~v~~~v~~~~~~~~G~~~~~~~~~ge~ 242 (522)
T 3zxs_A 165 YREMRRRTGLLMEGDEPAGGKWNFDTENRKPAAPD--LLRPRPLRFEPDAEVRAVLDLVEARFPRHFGRLRPFHWATDRA 242 (522)
T ss_dssp HHHHHHHHTTTEETTEEGGGSSCCGGGSCCCCCCC--TTCCCCCCCCCCHHHHHHHHHHHHHCTTSSSCCCSCCCCCSHH
T ss_pred HHHHHHHhCcCCCCCCCCCCccCccccccccCCCC--CCCCCCCCCCCchhHHHHHHHHHHhccCCcCccccCCCCCCHH
Confidence 6656554221111 11210 00010000011001 1122222211 1111 11245799999
Q ss_pred HHHHHHccchhHHHhhhcCCCCCcCCCCCCCC----CCccCchhhhcCcccHHHHHHHHHHHhhcC---cchHHHHHHHh
Q 017242 236 AAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPR----ALSGLSPYLHFGQISAQRCALEARKARKLC---PEAIDTFLEEL 308 (375)
Q Consensus 236 ~A~~~L~~~~~~Fl~~~l~~Y~~~Rd~p~~~~----~tS~LSpyL~~G~IS~R~v~~~~~~~~~~~---~~~~~~fl~eL 308 (375)
+|+++| ++|+.+++.+|++.||.|+. + +||+|||||+||+||||+|++++.+..... ..+.++|++||
T Consensus 243 ~A~~~L----~~Fl~~rl~~Y~~~rD~~~~-~~~~~~tS~LSpyL~~G~LSpRev~~~~~~~~~~~~~~~~~~e~firel 317 (522)
T 3zxs_A 243 EALRAL----DHFIRESLPRFGDEQDAMLA-DDPFLSHALLSSSMNLGLLGPMEVCRRAETEWREGRAPLNAVEGFIRQI 317 (522)
T ss_dssp HHHHHH----HHHHHHTGGGTTTTTTCCBT-TBSSTTCCCCHHHHHHTSSCHHHHHHHHHHHHHTTSSCHHHHHHHHHHH
T ss_pred HHHHHH----HHHHHhhhhhhhhhccCccc-CCCCCCcccccHHHhCCCcCHHHHHHHHHHHHHhcCCchhhHHHHHHHH
Confidence 999999 99999999999999999976 4 699999999999999999999988654322 24578899999
Q ss_pred H-HHHHHhhhhhhcC-CCCCCCcCchHHHHHhHhhhhcCCcccCCCHHHHhhCCCCchhhhHhhhhh
Q 017242 309 I-VRRELADNFCFYQ-PNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPVSIYLWMFI 373 (375)
Q Consensus 309 ~-wRrEf~~~~~~~~-P~~~~~~~~~~W~~~~l~~~~~d~~~w~~~~e~~~~G~TG~PiVDA~~~~~ 373 (375)
+ || |||+++++++ |++..... ....+..+ +.|.+|+||||+|||+|--|
T Consensus 318 lgWR-EF~~~l~~~~~P~~~~~n~----------~~~~~~l~-----~~~w~G~TG~P~VDA~MRqL 368 (522)
T 3zxs_A 318 LGWR-EYVRGIWTLSGPDYIRSNG----------LGHSAALP-----PLYWGKPTRMACLSAAVAQT 368 (522)
T ss_dssp HTHH-HHHHHHHHHHGGGGGGCCT----------TCCCBCCC-----GGGGTCCCSCHHHHHHHHHH
T ss_pred HHHH-HHHHHHHHHhCcccccccc----------ccccccch-----HHHhcCCCCCHHHHHHHHHH
Confidence 7 98 9999999886 87643211 01122233 23449999999999999655
No 14
>3dlo_A Universal stress protein; unknown function, structural genomics, PSI-2, protein struct initiative, midwest center for structural genomics; HET: MSE; 1.97A {Archaeoglobus fulgidus} PDB: 3qtb_A*
Probab=94.63 E-value=0.25 Score=40.67 Aligned_cols=87 Identities=23% Similarity=0.106 Sum_probs=66.4
Q ss_pred CC-CccCCHHHHHHHHHHhhCCCCEEEEEEcCCCCcCcchhHHHHHHHhHHHHHHHHHHhcCCcEEE----EcCCccchH
Q 017242 38 DQ-RVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQRNIEETFQILFFL----FQGEAEDNI 112 (375)
Q Consensus 38 DL-Rl~DN~aL~~A~~~a~~~~~~vl~vfi~dp~~~~~~~~r~~Fl~esL~~L~~~L~~~~g~~L~v----~~g~~~~~l 112 (375)
|. --....+|..|+..|...+.+|..+++.++... .......-..+.|.++.+.+ ++.|+...+ ..|++.+.|
T Consensus 32 D~~s~~s~~al~~A~~la~~~~a~l~llhV~~~~~~-~~~~~~~~~~~~l~~~~~~~-~~~g~~~~~~~~v~~G~~~~~I 109 (155)
T 3dlo_A 32 DKKSDRAERVLRFAAEEARLRGVPVYVVHSLPGGGR-TKDEDIIEAKETLSWAVSII-RKEGAEGEEHLLVRGKEPPDDI 109 (155)
T ss_dssp CSSSHHHHHHHHHHHHHHHHHTCCEEEEEEECCSTT-SCHHHHHHHHHHHHHHHHHH-HHTTCCEEEEEEESSSCHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCEEEEEEEEcCCCc-ccHHHHHHHHHHHHHHHHHH-HhcCCCceEEEEecCCCHHHHH
Confidence 55 555667889999888877889999999875422 12233344567788888888 888987653 359999999
Q ss_pred HHHHHHhCCCEEEE
Q 017242 113 PNFVRECGASLLVT 126 (375)
Q Consensus 113 ~~l~~~~~~~~V~~ 126 (375)
.+.+++.+++.|+.
T Consensus 110 ~~~a~~~~~DLIV~ 123 (155)
T 3dlo_A 110 VDFADEVDAIAIVI 123 (155)
T ss_dssp HHHHHHTTCSEEEE
T ss_pred HHHHHHcCCCEEEE
Confidence 99999999999997
No 15
>3s3t_A Nucleotide-binding protein, universal stress PROT family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: ATP; 1.90A {Lactobacillus plantarum} SCOP: c.26.2.0
Probab=94.50 E-value=0.18 Score=40.46 Aligned_cols=88 Identities=15% Similarity=0.107 Sum_probs=64.9
Q ss_pred CCCccCCHHHHHHHHHHhhCCCCEEEEEEcCCCCcCc-c---------hhHHHHHHHhHHHHHHHHHHhcCC---cEEEE
Q 017242 38 DQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGA-K---------ARQLGFMLRGLRLLQRNIEETFQI---LFFLF 104 (375)
Q Consensus 38 DLRl~DN~aL~~A~~~a~~~~~~vl~vfi~dp~~~~~-~---------~~r~~Fl~esL~~L~~~L~~~~g~---~L~v~ 104 (375)
|.--....+|..|+..|.+.+.+|..+++.++..... . .....-..+.|..+.+.+ .+.|+ ...+.
T Consensus 13 D~s~~s~~al~~A~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~g~~~~~~~~~ 91 (146)
T 3s3t_A 13 DSSDAAQAAFTEAVNIAQRHQANLTALYVVDDSAYHTPALDPVLSELLDAEAAHAKDAMRQRQQFV-ATTSAPNLKTEIS 91 (146)
T ss_dssp CSSHHHHHHHHHHHHHHHHHTCEEEEEEEEECCCCCCGGGHHHHHHHHHHHHHHHHHHHHHHHHHH-TTSSCCCCEEEEE
T ss_pred CCCHHHHHHHHHHHHHHHhcCCEEEEEEEecCccccccccccccHHHHHHHHHHHHHHHHHHHHHH-HhcCCcceEEEEe
Confidence 4444556789999998887788999999988643221 1 122334455677777788 77777 56778
Q ss_pred cCCccchHHH-HHHHhCCCEEEE
Q 017242 105 QGEAEDNIPN-FVRECGASLLVT 126 (375)
Q Consensus 105 ~g~~~~~l~~-l~~~~~~~~V~~ 126 (375)
.|++.+.|.+ .+++.+++.|+.
T Consensus 92 ~g~~~~~I~~~~a~~~~~dliV~ 114 (146)
T 3s3t_A 92 YGIPKHTIEDYAKQHPEIDLIVL 114 (146)
T ss_dssp EECHHHHHHHHHHHSTTCCEEEE
T ss_pred cCChHHHHHHHHHhhcCCCEEEE
Confidence 8999999999 999999999997
No 16
>3fg9_A Protein of universal stress protein USPA family; APC60691, nucleotide- binding, lactobacillus plantarum WCFS1, structural genomics PSI-2; 1.47A {Lactobacillus plantarum}
Probab=94.02 E-value=0.39 Score=39.09 Aligned_cols=87 Identities=17% Similarity=0.166 Sum_probs=64.1
Q ss_pred CCccCCHHHHHHHHHHhhCCCCEEEEEEcCCCCcC----c----chhHHHHHHHhHHHHHHHHHHhcCC---cEEEEc-C
Q 017242 39 QRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLG----A----KARQLGFMLRGLRLLQRNIEETFQI---LFFLFQ-G 106 (375)
Q Consensus 39 LRl~DN~aL~~A~~~a~~~~~~vl~vfi~dp~~~~----~----~~~r~~Fl~esL~~L~~~L~~~~g~---~L~v~~-g 106 (375)
.--....+|..|+..|.+.+..|..+++.++.... . ......-..+.|..+.+.+ ++.|+ ...+.. |
T Consensus 26 ~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~g~~~~~~~v~~~g 104 (156)
T 3fg9_A 26 DNTSSERAFRYATTLAHDYDVPLGICSVLESEDINIFDSLTPSKIQAKRKHVEDVVAEYVQLA-EQRGVNQVEPLVYEGG 104 (156)
T ss_dssp CCHHHHHHHHHHHHHHHHHTCCEEEEEEECCCCTTCCCSSHHHHHHHHHHHHHHHHHHHHHHH-HHHTCSSEEEEEEECS
T ss_pred CCHHHHHHHHHHHHHHHhcCCEEEEEEEEeCCCccccccCCHHHHHHHHHHHHHHHHHHHHHH-HHcCCCceEEEEEeCC
Confidence 33445678888988888778899999998864321 1 1122334556677788888 88887 346677 9
Q ss_pred CccchHHHH-HHHhCCCEEEE
Q 017242 107 EAEDNIPNF-VRECGASLLVT 126 (375)
Q Consensus 107 ~~~~~l~~l-~~~~~~~~V~~ 126 (375)
++.+.|.+. +++.+++.|+.
T Consensus 105 ~~~~~I~~~~a~~~~~DlIV~ 125 (156)
T 3fg9_A 105 DVDDVILEQVIPEFKPDLLVT 125 (156)
T ss_dssp CHHHHHHHTHHHHHCCSEEEE
T ss_pred CHHHHHHHHHHHhcCCCEEEE
Confidence 999999998 99999999997
No 17
>3fdx_A Putative filament protein / universal stress PROT; structural genomics, APC60640.1, universal protein F, PSI-2; HET: MSE ATP; 1.58A {Klebsiella pneumoniae subsp} PDB: 3fh0_A*
Probab=93.99 E-value=0.32 Score=38.84 Aligned_cols=83 Identities=14% Similarity=0.121 Sum_probs=60.8
Q ss_pred CCHHHHHHHHHHhhCCCCEEEEEEcCCCCcC--c-------chhHHHHHHHhHHHHHHHHHHhcCC-----cEEEEcCCc
Q 017242 43 DNWALIHAVDQANKNNVPVAVAFNLFDQFLG--A-------KARQLGFMLRGLRLLQRNIEETFQI-----LFFLFQGEA 108 (375)
Q Consensus 43 DN~aL~~A~~~a~~~~~~vl~vfi~dp~~~~--~-------~~~r~~Fl~esL~~L~~~L~~~~g~-----~L~v~~g~~ 108 (375)
...+|..|+..|.+.+.+|..+++.++.... . .........+.+..+++-+ ++.|+ ...+..|++
T Consensus 16 s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~v~~~~~~g~~ 94 (143)
T 3fdx_A 16 TERIISHVESEARIDDAEVHFLTVIPSLPYYASLGMAYTAELPGMDELREGSETQLKEIA-KKFSIPEDRMHFHVAEGSP 94 (143)
T ss_dssp CTTHHHHHHHHHHHHTCEEEEEEEECC----------------CHHHHHHHHHHHHHHHH-TTSCCCGGGEEEEEEESCH
T ss_pred HHHHHHHHHHHHHhcCCeEEEEEEecCCcccccccccccchhhhHHHHHHHHHHHHHHHH-HHcCCCCCceEEEEEecCh
Confidence 5788999999988778899999998863211 0 0112234456667777777 77775 456788999
Q ss_pred cchHHHHHHHhCCCEEEE
Q 017242 109 EDNIPNFVRECGASLLVT 126 (375)
Q Consensus 109 ~~~l~~l~~~~~~~~V~~ 126 (375)
.+.|.+.+++.+++.|+.
T Consensus 95 ~~~I~~~a~~~~~dliV~ 112 (143)
T 3fdx_A 95 KDKILALAKSLPADLVII 112 (143)
T ss_dssp HHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHHHhCCCEEEE
Confidence 999999999999999997
No 18
>3tnj_A Universal stress protein (USP); structural genomics, PSI-biology, midwest center for structu genomics, MCSG, chaperone; HET: AMP; 2.00A {Nitrosomonas europaea} PDB: 2pfs_A*
Probab=93.74 E-value=0.28 Score=39.55 Aligned_cols=88 Identities=15% Similarity=0.116 Sum_probs=59.3
Q ss_pred CCCccCCHHHHHHHHHHhhCCCCEEEEEEcCCCCc---C--------cchhHHHHHHHhHHHHHHHHHHhcCC---cEEE
Q 017242 38 DQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFL---G--------AKARQLGFMLRGLRLLQRNIEETFQI---LFFL 103 (375)
Q Consensus 38 DLRl~DN~aL~~A~~~a~~~~~~vl~vfi~dp~~~---~--------~~~~r~~Fl~esL~~L~~~L~~~~g~---~L~v 103 (375)
|.--....+|..|+..|.+.+.+|..+++.++... . ..........++.+.|++-. ++.|+ ...+
T Consensus 14 D~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~ 92 (150)
T 3tnj_A 14 DFSSEDSQVVQKVRNLASQIGARLSLIHVLDNIPMPDTPYGTAIPLDTETTYDAMLDVEKQKLSQIG-NTLGIDPAHRWL 92 (150)
T ss_dssp CCSTTHHHHHHHHHHHHHHHTCEEEEEEEEC--------CTTCCCSSSCCCHHHHHHHHHHHHHHHH-HHHTCCGGGEEE
T ss_pred CCCHHHHHHHHHHHHHHhhcCCEEEEEEEEcCccccccccccccCcCHHHHHHHHHHHHHHHHHHHH-HHcCCCcceEEE
Confidence 44445567899999998887889999999876321 0 01122233334444444444 55565 4788
Q ss_pred EcCCccchHHHHHHHhCCCEEEE
Q 017242 104 FQGEAEDNIPNFVRECGASLLVT 126 (375)
Q Consensus 104 ~~g~~~~~l~~l~~~~~~~~V~~ 126 (375)
..|++.+.|.+.+++.+++.|+.
T Consensus 93 ~~g~~~~~I~~~a~~~~~dliV~ 115 (150)
T 3tnj_A 93 VWGEPREEIIRIAEQENVDLIVV 115 (150)
T ss_dssp EESCHHHHHHHHHHHTTCSEEEE
T ss_pred ecCCHHHHHHHHHHHcCCCEEEE
Confidence 89999999999999999999997
No 19
>3hgm_A Universal stress protein TEAD; rossman fold, signaling protein; HET: ATP; 1.90A {Halomonas elongata} SCOP: c.26.2.0
Probab=92.94 E-value=0.46 Score=38.00 Aligned_cols=84 Identities=13% Similarity=0.073 Sum_probs=62.9
Q ss_pred cCCHHHHHHHHHHhhCCCCEEEEEEcCCCC-c-------------CcchhHHHHHHHhHHHHHHHHHHhcCC-----cEE
Q 017242 42 RDNWALIHAVDQANKNNVPVAVAFNLFDQF-L-------------GAKARQLGFMLRGLRLLQRNIEETFQI-----LFF 102 (375)
Q Consensus 42 ~DN~aL~~A~~~a~~~~~~vl~vfi~dp~~-~-------------~~~~~r~~Fl~esL~~L~~~L~~~~g~-----~L~ 102 (375)
....+|.+|+..|.+.+.+|..+++.++.. . ........-..+.|..+.+.+ ++.|+ ...
T Consensus 14 ~s~~al~~A~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~g~~~~~~~~~ 92 (147)
T 3hgm_A 14 GAVKALEKGVGLQQLTGAELYILCVFKHHSLLEASLSMARPEQLDIPDDALKDYATEIAVQAKTRA-TELGVPADKVRAF 92 (147)
T ss_dssp HHHHHHHHHHHHHHHHCCEEEEEEEECCHHHHHHTBSSCCCGGGCCCTTHHHHHHHHHHHHHHHHH-HHTTCCGGGEEEE
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEEEecCcccccccccccChhhhhhHHHHHHHHHHHHHHHHHHHH-HhcCCCccceEEE
Confidence 445788899988887788999999987532 0 011222344556777888888 88885 456
Q ss_pred EEcCCccchHHHHHHHhCCCEEEE
Q 017242 103 LFQGEAEDNIPNFVRECGASLLVT 126 (375)
Q Consensus 103 v~~g~~~~~l~~l~~~~~~~~V~~ 126 (375)
+..|++.+.|.+.+++.+++.|+.
T Consensus 93 ~~~g~~~~~I~~~a~~~~~dliV~ 116 (147)
T 3hgm_A 93 VKGGRPSRTIVRFARKRECDLVVI 116 (147)
T ss_dssp EEESCHHHHHHHHHHHTTCSEEEE
T ss_pred EecCCHHHHHHHHHHHhCCCEEEE
Confidence 678999999999999999999997
No 20
>2dum_A Hypothetical protein PH0823; conserved hypothetical protein, putative universal protein A structural genomics, NPPSFA; 2.75A {Pyrococcus horikoshii}
Probab=92.76 E-value=0.37 Score=39.88 Aligned_cols=88 Identities=15% Similarity=0.008 Sum_probs=61.2
Q ss_pred CCCccCCHHHHHHHHHHhhCCCCEEEEEEcCCCCcC-----c--------------chhHHHHHHHhHHHHHHHHHHhcC
Q 017242 38 DQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLG-----A--------------KARQLGFMLRGLRLLQRNIEETFQ 98 (375)
Q Consensus 38 DLRl~DN~aL~~A~~~a~~~~~~vl~vfi~dp~~~~-----~--------------~~~r~~Fl~esL~~L~~~L~~~~g 98 (375)
|.--....+|.+|+..|.+.+..|..+++.++.... . ......-..+.|..+.+.+ +..|
T Consensus 13 D~s~~s~~al~~A~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~g 91 (170)
T 2dum_A 13 DFSEGAYRAVEVFEKRNKMEVGEVILLHVIDEGTLEELMDGYSFFYDNAEIELKDIKEKLKEEASRKLQEKAEEV-KRAF 91 (170)
T ss_dssp CSSHHHHHHHHHHHHHCCSCCSEEEEEEEEETTGGGCCC------------CCTTSHHHHHHHHHHHHHHHHHHH-HHHT
T ss_pred cCCHHHHHHHHHHHHHHHhcCCEEEEEEEecCccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHH-HHcC
Confidence 333344568889998887778889999988754211 0 0111223345566777777 6677
Q ss_pred Cc--E--EEEcCCccchHHHHHHHhCCCEEEE
Q 017242 99 IL--F--FLFQGEAEDNIPNFVRECGASLLVT 126 (375)
Q Consensus 99 ~~--L--~v~~g~~~~~l~~l~~~~~~~~V~~ 126 (375)
++ . .+..|++.+.|.+.+++.+++.|+.
T Consensus 92 ~~~~~~~~~~~g~~~~~I~~~a~~~~~DlIV~ 123 (170)
T 2dum_A 92 RAKNVRTIIRFGIPWDEIVKVAEEENVSLIIL 123 (170)
T ss_dssp TCSEEEEEEEEECHHHHHHHHHHHTTCSEEEE
T ss_pred CceeeeeEEecCChHHHHHHHHHHcCCCEEEE
Confidence 65 3 5678999999999999999999997
No 21
>1tq8_A Hypothetical protein RV1636; MTCY01B2.28, structural target, NYSGXRC, PSI, protein structure initiative; 2.40A {Mycobacterium tuberculosis} SCOP: c.26.2.4
Probab=92.67 E-value=0.39 Score=39.80 Aligned_cols=87 Identities=16% Similarity=0.041 Sum_probs=58.4
Q ss_pred CCCccCCHHHHHHHHHHhhCCCCEEEE--EEcCCCCc--Ccc-------hhHHHHHHHhHHHHHHHHHHhcCCc---EEE
Q 017242 38 DQRVRDNWALIHAVDQANKNNVPVAVA--FNLFDQFL--GAK-------ARQLGFMLRGLRLLQRNIEETFQIL---FFL 103 (375)
Q Consensus 38 DLRl~DN~aL~~A~~~a~~~~~~vl~v--fi~dp~~~--~~~-------~~r~~Fl~esL~~L~~~L~~~~g~~---L~v 103 (375)
|.--....+|..|++.|. .+.+|..+ ++.++... ... .....-..+.|.++.+.+ ++.|++ ..+
T Consensus 25 D~s~~s~~al~~A~~lA~-~~a~l~ll~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~gv~~v~~~v 102 (163)
T 1tq8_A 25 DGSDSSMRAVDRAAQIAG-ADAKLIIASAYLPQHEDARAADILKDESYKVTGTAPIYEILHDAKERA-HNAGAKNVEERP 102 (163)
T ss_dssp CSSHHHHHHHHHHHHHHT-TTSEEEEEEECCC--------------------CCTHHHHHHHHHHHH-HTTTCCEEEEEE
T ss_pred CCCHHHHHHHHHHHHHhC-CCCEEEEEEeeeccCcccccccccccHHHHHHHHHHHHHHHHHHHHHH-HHcCCCeEEEEE
Confidence 444445568999999988 78889888 88765321 000 000011234566777778 777876 566
Q ss_pred EcCCccchHHHHHHHhCCCEEEE
Q 017242 104 FQGEAEDNIPNFVRECGASLLVT 126 (375)
Q Consensus 104 ~~g~~~~~l~~l~~~~~~~~V~~ 126 (375)
..|++.+.|.+.+++.+++.|+.
T Consensus 103 ~~G~~~~~I~~~a~~~~~DLIV~ 125 (163)
T 1tq8_A 103 IVGAPVDALVNLADEEKADLLVV 125 (163)
T ss_dssp ECSSHHHHHHHHHHHTTCSEEEE
T ss_pred ecCCHHHHHHHHHHhcCCCEEEE
Confidence 78999999999999999999997
No 22
>3idf_A USP-like protein; universal, stress, PSI, MCSG, structural genomics, midwest center for structural genomics structure initiative; 2.00A {Wolinella succinogenes}
Probab=91.46 E-value=1 Score=35.45 Aligned_cols=82 Identities=10% Similarity=-0.017 Sum_probs=59.8
Q ss_pred cCCHHHHHHHHHH-hhCCCCEEEEEEcCCCCcCcc---------hhHH-HHHHHhHHHHHHHHHHhcCCc--EEEEcCCc
Q 017242 42 RDNWALIHAVDQA-NKNNVPVAVAFNLFDQFLGAK---------ARQL-GFMLRGLRLLQRNIEETFQIL--FFLFQGEA 108 (375)
Q Consensus 42 ~DN~aL~~A~~~a-~~~~~~vl~vfi~dp~~~~~~---------~~r~-~Fl~esL~~L~~~L~~~~g~~--L~v~~g~~ 108 (375)
....+|..|+..| .+.+..|..+++.++...... .... .-..+.|..+.+.+ .+.|++ ..+..|++
T Consensus 13 ~s~~al~~a~~la~~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~g~~~~~~v~~g~~ 91 (138)
T 3idf_A 13 ACERAAQYILDMFGKDADCTLTLIHVKPEFMLYGEAVLAAYDEIEMKEEEKAKLLTQKFSTFF-TEKGINPFVVIKEGEP 91 (138)
T ss_dssp HHHHHHHHHHHHHTTCTTEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HTTTCCCEEEEEESCH
T ss_pred HHHHHHHHHHHHhccCCCCEEEEEEEecCCCcccccccCcHHHHHHHHHHHHHHHHHHHHHHH-HHCCCCeEEEEecCCh
Confidence 3457889999999 878888999999887542210 0111 33445667777778 777776 56778999
Q ss_pred cchHHHHHHHhCCCEEEE
Q 017242 109 EDNIPNFVRECGASLLVT 126 (375)
Q Consensus 109 ~~~l~~l~~~~~~~~V~~ 126 (375)
.+.|.+.++ +++.|+.
T Consensus 92 ~~~I~~~a~--~~dliV~ 107 (138)
T 3idf_A 92 VEMVLEEAK--DYNLLII 107 (138)
T ss_dssp HHHHHHHHT--TCSEEEE
T ss_pred HHHHHHHHh--cCCEEEE
Confidence 999999988 9999987
No 23
>3olq_A Universal stress protein E; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: UNL; 1.82A {Proteus mirabilis}
Probab=91.45 E-value=3.6 Score=37.45 Aligned_cols=116 Identities=10% Similarity=0.034 Sum_probs=75.1
Q ss_pred CHHHHHHHHHHhhC--CCCEEEEEEcCCCCcCc---------chhHHHHHHHhHHHHHHHHHHhcCC---cEEEEcCCcc
Q 017242 44 NWALIHAVDQANKN--NVPVAVAFNLFDQFLGA---------KARQLGFMLRGLRLLQRNIEETFQI---LFFLFQGEAE 109 (375)
Q Consensus 44 N~aL~~A~~~a~~~--~~~vl~vfi~dp~~~~~---------~~~r~~Fl~esL~~L~~~L~~~~g~---~L~v~~g~~~ 109 (375)
..+|..|...|... +.+|..+++.++..... .........+....|++-+ ++.|+ ..++..|++.
T Consensus 177 ~~al~~a~~la~~~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~v~~g~~~ 255 (319)
T 3olq_A 177 LKLIELTNDLSHRIQKDPDVHLLSAYPVAPINIAIELPDFDPNLYNNALRGQHLIAMKELR-QKFSIPEEKTHVKEGLPE 255 (319)
T ss_dssp HHHHHHHHHHHHHHCSSCCEEEEEEECCCSCSCCTTCTTCCHHHHHHHHHHHHHHHHHHHH-HHTTCCGGGEEEEESCHH
T ss_pred HHHHHHHHHHHHhccCCCeEEEEEeecCcchhhhccCCcccHHHHHHHHHHHHHHHHHHHH-HHhCCCcccEEEecCCcH
Confidence 67888898888777 78999999987643211 1122223334455555556 66676 4788899999
Q ss_pred chHHHHHHHhCCCEEEE-cCCcchHHHHHHHHHHHHc--CCCceEEEecCCeee
Q 017242 110 DNIPNFVRECGASLLVT-DFSPLREIRRCKDKICNRV--SDSVTIHEVDAHNVV 160 (375)
Q Consensus 110 ~~l~~l~~~~~~~~V~~-~~~p~~~~~~rd~~v~~~l--~~~i~~~~~~~~~l~ 160 (375)
+.|.+.+++.+++.|+. .+......+..--.+.+.+ ...|++-.+.....+
T Consensus 256 ~~I~~~a~~~~~dLiV~G~~g~~~~~~~~~Gsv~~~vl~~~~~pVLvv~~~~~~ 309 (319)
T 3olq_A 256 QVIPQVCEELNAGIVVLGILGRTGLSAAFLGNTAEQLIDHIKCDLLAIKPDGFT 309 (319)
T ss_dssp HHHHHHHHHTTEEEEEEECCSCCSTHHHHHHHHHHHHHTTCCSEEEEECCTTCC
T ss_pred HHHHHHHHHhCCCEEEEeccCccCCccccccHHHHHHHhhCCCCEEEECCCCCC
Confidence 99999999999999997 3322221222334555443 457888887654433
No 24
>1mjh_A Protein (ATP-binding domain of protein MJ0577); hypothetical protein, structural genomics, functional assignment; HET: ATP; 1.70A {Methanocaldococcus jannaschii} SCOP: c.26.2.4
Probab=90.64 E-value=0.75 Score=37.52 Aligned_cols=88 Identities=10% Similarity=0.099 Sum_probs=59.7
Q ss_pred CCCccCCHHHHHHHHHHhhCCCCEEEEEEcCCC-----Cc-Ccc-------hh-----------HHHHHHHhHHHHHHHH
Q 017242 38 DQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQ-----FL-GAK-------AR-----------QLGFMLRGLRLLQRNI 93 (375)
Q Consensus 38 DLRl~DN~aL~~A~~~a~~~~~~vl~vfi~dp~-----~~-~~~-------~~-----------r~~Fl~esL~~L~~~L 93 (375)
|.--....+|.+|++.|.+.+.+|..+++.++. .. ..+ +. ...-..+.|..+.+.+
T Consensus 13 D~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 92 (162)
T 1mjh_A 13 DFSETAEIALKHVKAFKTLKAEEVILLHVIDEREIKKRDIFSLLLGVAGLNKSVEEFENELKNKLTEEAKNKMENIKKEL 92 (162)
T ss_dssp CSCHHHHHHHHHHHHTCCSSCCEEEEEEEEEGGGTC-----------------CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhhcCCeEEEEEEecCccccccccccccccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344568888888887777889999998753 10 110 10 0112334566677777
Q ss_pred HHhcCCc--EEEEcCCccchHHHHHHHhCCCEEEE
Q 017242 94 EETFQIL--FFLFQGEAEDNIPNFVRECGASLLVT 126 (375)
Q Consensus 94 ~~~~g~~--L~v~~g~~~~~l~~l~~~~~~~~V~~ 126 (375)
+..|++ ..+..|++.+.|.+.+++.+++.|+.
T Consensus 93 -~~~g~~~~~~v~~G~~~~~I~~~a~~~~~dlIV~ 126 (162)
T 1mjh_A 93 -EDVGFKVKDIIVVGIPHEEIVKIAEDEGVDIIIM 126 (162)
T ss_dssp -HHTTCEEEEEEEEECHHHHHHHHHHHTTCSEEEE
T ss_pred -HHcCCceEEEEcCCCHHHHHHHHHHHcCCCEEEE
Confidence 777876 45677999999999999999999997
No 25
>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus}
Probab=90.51 E-value=1.4 Score=39.95 Aligned_cols=107 Identities=14% Similarity=0.032 Sum_probs=73.7
Q ss_pred CCCccCCHHHHHHHHHHhhCCCCEEEEEEcCCCCcCcchhHHHHHHHhHHHHHHHHHHhcCCc--EEEEcCCccchHHHH
Q 017242 38 DQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQRNIEETFQIL--FFLFQGEAEDNIPNF 115 (375)
Q Consensus 38 DLRl~DN~aL~~A~~~a~~~~~~vl~vfi~dp~~~~~~~~r~~Fl~esL~~L~~~L~~~~g~~--L~v~~g~~~~~l~~l 115 (375)
|.--....+|..|...|...+.+|..+++.++.. -.+.+.++.+.| ++.|++ ..+..|++.+.|.+.
T Consensus 178 d~s~~s~~al~~a~~la~~~~~~l~ll~v~~~~~----------~~~~l~~~~~~l-~~~~~~~~~~~~~g~~~~~I~~~ 246 (294)
T 3loq_A 178 DFSKWADRALEYAKFVVKKTGGELHIIHVSEDGD----------KTADLRVMEEVI-GAEGIEVHVHIESGTPHKAILAK 246 (294)
T ss_dssp CSSHHHHHHHHHHHHHHHHHTCEEEEEEECSSSC----------CHHHHHHHHHHH-HHTTCCEEEEEECSCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhhhcCCEEEEEEEccCch----------HHHHHHHHHHHH-HHcCCcEEEEEecCCHHHHHHHH
Confidence 5555667788889888877777899999988643 235577888889 888876 455679999999999
Q ss_pred HHHhCCCEEEE-cCCcchHHHHHHHHHHHH-c-CCCceEEEec
Q 017242 116 VRECGASLLVT-DFSPLREIRRCKDKICNR-V-SDSVTIHEVD 155 (375)
Q Consensus 116 ~~~~~~~~V~~-~~~p~~~~~~rd~~v~~~-l-~~~i~~~~~~ 155 (375)
+++.+++.|+. .+......+-.-..+.+. + ...|++..+.
T Consensus 247 a~~~~~dLlV~G~~~~~~~~~~~~Gs~~~~vl~~~~~pvLvv~ 289 (294)
T 3loq_A 247 REEINATTIFMGSRGAGSVMTMILGSTSESVIRRSPVPVFVCK 289 (294)
T ss_dssp HHHTTCSEEEEECCCCSCHHHHHHHCHHHHHHHHCSSCEEEEC
T ss_pred HHhcCcCEEEEeCCCCCCccceeeCcHHHHHHhcCCCCEEEEC
Confidence 99999999987 332221111222233332 3 3467776654
No 26
>2z08_A Universal stress protein family; uncharacterized conserved protein, structural genomics, unknown function, NPPSFA; HET: ATP; 1.55A {Thermus thermophilus} SCOP: c.26.2.4 PDB: 1wjg_A* 2z09_A* 2z3v_A
Probab=89.62 E-value=1.1 Score=35.42 Aligned_cols=84 Identities=15% Similarity=0.034 Sum_probs=52.5
Q ss_pred cCCHHHHHHHHHHhhCCCCEEEEEEcCCCCcCcc---hhH--HHHHHHhHHHHHHHHHHhcCC---cEEEEcCCccchHH
Q 017242 42 RDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAK---ARQ--LGFMLRGLRLLQRNIEETFQI---LFFLFQGEAEDNIP 113 (375)
Q Consensus 42 ~DN~aL~~A~~~a~~~~~~vl~vfi~dp~~~~~~---~~r--~~Fl~esL~~L~~~L~~~~g~---~L~v~~g~~~~~l~ 113 (375)
....+|..|+..|.+.+.+|..+++.++.....+ +.. ....-+.-+.|++-. +..|+ ...+..|++.+.|.
T Consensus 14 ~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~~~~~~~~~g~~~~~I~ 92 (137)
T 2z08_A 14 HARRAAEVAKAEAEAHGARLIVVHAYEPVPDYLGEPFFEEALRRRLERAEGVLEEAR-ALTGVPKEDALLLEGVPAEAIL 92 (137)
T ss_dssp HHHHHHHHHHHHHHHHTCEEEEEEEECC--------------CHHHHHHHHHHHHHH-HHHCCCGGGEEEEESSHHHHHH
T ss_pred HHHHHHHHHHHHHhhcCCEEEEEEEecCCCccccccchHHHHHHHHHHHHHHHHHHH-HHcCCCccEEEEEecCHHHHHH
Confidence 3456888898888877889999999875321111 100 001111122222222 22566 56778899999999
Q ss_pred HHHHHhCCCEEEE
Q 017242 114 NFVRECGASLLVT 126 (375)
Q Consensus 114 ~l~~~~~~~~V~~ 126 (375)
+.+++.+++.|+.
T Consensus 93 ~~a~~~~~dliV~ 105 (137)
T 2z08_A 93 QAARAEKADLIVM 105 (137)
T ss_dssp HHHHHTTCSEEEE
T ss_pred HHHHHcCCCEEEE
Confidence 9999999999997
No 27
>1jmv_A USPA, universal stress protein A; chaperone; 1.85A {Haemophilus influenzae} SCOP: c.26.2.4
Probab=88.10 E-value=1.3 Score=34.94 Aligned_cols=115 Identities=13% Similarity=0.081 Sum_probs=68.6
Q ss_pred CCCccCCHHHHHHHHHHhhCCCCEEEEEEcCC--CCc-Ccch-hHHHH----HHHhHHHHHHHHHHhcCCc---EEEEcC
Q 017242 38 DQRVRDNWALIHAVDQANKNNVPVAVAFNLFD--QFL-GAKA-RQLGF----MLRGLRLLQRNIEETFQIL---FFLFQG 106 (375)
Q Consensus 38 DLRl~DN~aL~~A~~~a~~~~~~vl~vfi~dp--~~~-~~~~-~r~~F----l~esL~~L~~~L~~~~g~~---L~v~~g 106 (375)
|.--....+|..|+..|.+.+.+|..+++.++ ... .... .--.+ .-++...|++-+ ++.|++ ..+..|
T Consensus 10 D~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~g 88 (141)
T 1jmv_A 10 DLSEESPILLKKAVGIAKRHDAKLSIIHVDVNFSDLYTGLIDVNMSSMQDRISTETQKALLDLA-ESVDYPISEKLSGSG 88 (141)
T ss_dssp CCSTTHHHHHHHHHHHHHHHTCEEEEEEEEECCGGGCCCCEEHHHHHHTTCCCCHHHHHHHHHH-HHSSSCCCCEEEEEE
T ss_pred cCchhhHHHHHHHHHHHHhcCCEEEEEEEecCchhhhccccccchHHHHHHHHHHHHHHHHHHH-HHcCCCceEEEEecC
Confidence 33344457899999988877888999998832 211 1100 00001 112334444445 556764 467789
Q ss_pred CccchHHHHHHHhCCCEEEEcCCcchHHHHHHHHHHHHc--CCCceEEEec
Q 017242 107 EAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICNRV--SDSVTIHEVD 155 (375)
Q Consensus 107 ~~~~~l~~l~~~~~~~~V~~~~~p~~~~~~rd~~v~~~l--~~~i~~~~~~ 155 (375)
++.+.|.+.+++.+++.|+.-....... +. -.+.+.+ ..+|++..+.
T Consensus 89 ~~~~~I~~~a~~~~~dliV~G~~~~~~~-~l-gs~~~~vl~~~~~pVlvv~ 137 (141)
T 1jmv_A 89 DLGQVLSDAIEQYDVDLLVTGHHQDFWS-KL-MSSTRQVMNTIKIDMLVVP 137 (141)
T ss_dssp CHHHHHHHHHHHTTCCEEEEEECCCCHH-HH-HHHHHHHHTTCCSEEEEEE
T ss_pred CHHHHHHHHHHhcCCCEEEEeCCCchhh-hh-cchHHHHHhcCCCCEEEee
Confidence 9999999999999999999731122211 22 3444443 4568887664
No 28
>3mt0_A Uncharacterized protein PA1789; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.58A {Pseudomonas aeruginosa}
Probab=86.53 E-value=2.8 Score=37.82 Aligned_cols=83 Identities=16% Similarity=0.086 Sum_probs=56.3
Q ss_pred CCHHHHHHHHHHhhCCCCEEEEEEcCCCCcCcc----hhHHHHHHHhHHHHHHHHHHhcCC---cEEEEcCCccchHHHH
Q 017242 43 DNWALIHAVDQANKNNVPVAVAFNLFDQFLGAK----ARQLGFMLRGLRLLQRNIEETFQI---LFFLFQGEAEDNIPNF 115 (375)
Q Consensus 43 DN~aL~~A~~~a~~~~~~vl~vfi~dp~~~~~~----~~r~~Fl~esL~~L~~~L~~~~g~---~L~v~~g~~~~~l~~l 115 (375)
...+|..|+..|...+..|..+++.++...... ........+....|++-+ ++.|+ ...+..|++.+.|.+.
T Consensus 154 s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~~~~~~v~~g~~~~~I~~~ 232 (290)
T 3mt0_A 154 HAGIISHAYDIAGLAKATLHVISAHPSPMLSSADPTFQLSETIEARYREACRTFQ-AEYGFSDEQLHIEEGPADVLIPRT 232 (290)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEEEEC---------CHHHHHHHHHHHHHHHHHHH-HHHTCCTTTEEEEESCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCeEEEEEEecCccccccCchhHHHHHHHHHHHHHHHHHH-HHcCCCcceEEEeccCHHHHHHHH
Confidence 367889999888888889999999886432110 111122223344455555 55576 4688899999999999
Q ss_pred HHHhCCCEEEE
Q 017242 116 VRECGASLLVT 126 (375)
Q Consensus 116 ~~~~~~~~V~~ 126 (375)
+++.+++.|+.
T Consensus 233 a~~~~~dLiVm 243 (290)
T 3mt0_A 233 AQKLDAVVTVI 243 (290)
T ss_dssp HHHHTCSEEEE
T ss_pred HHhcCCCEEEE
Confidence 99999999997
No 29
>2gm3_A Unknown protein; AT3G01520, putative ethylene-responsive protein, USP domain, nucleotide binding domain, AMP; HET: MSE AMP; 2.46A {Arabidopsis thaliana} SCOP: c.26.2.4
Probab=85.73 E-value=5.8 Score=32.53 Aligned_cols=82 Identities=13% Similarity=0.145 Sum_probs=53.3
Q ss_pred CHHHHHHHHHHhh---CCCCEEEEEEcCCCCcC--------cchhH--------HHHHHHhHHHHHHHHHHhcCCcE--E
Q 017242 44 NWALIHAVDQANK---NNVPVAVAFNLFDQFLG--------AKARQ--------LGFMLRGLRLLQRNIEETFQILF--F 102 (375)
Q Consensus 44 N~aL~~A~~~a~~---~~~~vl~vfi~dp~~~~--------~~~~r--------~~Fl~esL~~L~~~L~~~~g~~L--~ 102 (375)
..+|..|++.+.+ .+..|..+++.++.... ..... ..-..+.|..+.+.+ .+.|+.. .
T Consensus 28 ~~al~~a~~la~~~~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~g~~~~~~ 106 (175)
T 2gm3_A 28 KRAFEWTLEKIVRSNTSDFKILLLHVQVVDEDGFDDVDSIYASPEDFRDMRQSNKAKGLHLLEFFVNKC-HEIGVGCEAW 106 (175)
T ss_dssp HHHHHHHHHHTTTTCTTSEEEEEEEEEC----------CCCCSHHHHHHHTTSHHHHHHHHHHHHHHHH-HHHTCEEEEE
T ss_pred HHHHHHHHHHhhcccCCCCEEEEEEEeecccccccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHH-HHCCCceEEE
Confidence 4578888876533 35578888887643110 01110 111234566677777 7778764 4
Q ss_pred EEcCCccchHHHHHHHhCCCEEEE
Q 017242 103 LFQGEAEDNIPNFVRECGASLLVT 126 (375)
Q Consensus 103 v~~g~~~~~l~~l~~~~~~~~V~~ 126 (375)
+..|++.+.|.+.+++.+++.|+.
T Consensus 107 v~~G~~~~~I~~~a~~~~~DLIVm 130 (175)
T 2gm3_A 107 IKTGDPKDVICQEVKRVRPDFLVV 130 (175)
T ss_dssp EEESCHHHHHHHHHHHHCCSEEEE
T ss_pred EecCCHHHHHHHHHHHhCCCEEEE
Confidence 678999999999999999999997
No 30
>1q77_A Hypothetical protein AQ_178; structural genomics, universal stress protein, PSI, protein structure initiative; 2.70A {Aquifex aeolicus} SCOP: c.26.2.4
Probab=84.29 E-value=4 Score=31.93 Aligned_cols=88 Identities=18% Similarity=0.050 Sum_probs=58.0
Q ss_pred CCCccCCHHHHHHHHHHhhCCCCEEEEEEc-CC--CC-------cCcc-h---hHHHHHHHhHHHHHHH--HHHhcC-Cc
Q 017242 38 DQRVRDNWALIHAVDQANKNNVPVAVAFNL-FD--QF-------LGAK-A---RQLGFMLRGLRLLQRN--IEETFQ-IL 100 (375)
Q Consensus 38 DLRl~DN~aL~~A~~~a~~~~~~vl~vfi~-dp--~~-------~~~~-~---~r~~Fl~esL~~L~~~--L~~~~g-~~ 100 (375)
|.--....+|..|+..|.+.+.+|..+++. ++ .. .... . ....-..+.|.++ +. + ...| +.
T Consensus 12 D~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~-~~~~~~~ 89 (138)
T 1q77_A 12 DAYSDCEKAITYAVNFSEKLGAELDILAVLEDVYNLERANVTFGLPFPPEIKEESKKRIERRLREV-WEKLT-GSTEIPG 89 (138)
T ss_dssp STTCCCHHHHHHHHHHHTTTCCEEEEEEECHHHHHHHHHHHHHCCCCCTHHHHHHHHHHHHHHHHH-HHHHH-SCCCCCC
T ss_pred cCCHhHHHHHHHHHHHHHHcCCeEEEEEEecccccccccccccCCCCChHHHHHHHHHHHHHHHHH-HHHhh-ccCCcce
Confidence 444446679999999998888899999998 62 11 0000 0 0111123344455 44 3 3344 56
Q ss_pred EEEEcCCccchHHHHHHHhCCCEEEEc
Q 017242 101 FFLFQGEAEDNIPNFVRECGASLLVTD 127 (375)
Q Consensus 101 L~v~~g~~~~~l~~l~~~~~~~~V~~~ 127 (375)
..+..|++.+.|.+.+++.+++.|+.-
T Consensus 90 ~~~~~g~~~~~I~~~a~~~~~dliV~G 116 (138)
T 1q77_A 90 VEYRIGPLSEEVKKFVEGKGYELVVWA 116 (138)
T ss_dssp EEEECSCHHHHHHHHHTTSCCSEEEEC
T ss_pred EEEEcCCHHHHHHHHHHhcCCCEEEEe
Confidence 677889999999999999999999984
No 31
>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus}
Probab=81.92 E-value=5 Score=36.09 Aligned_cols=87 Identities=16% Similarity=0.002 Sum_probs=64.4
Q ss_pred CCCccCCHHHHHHHHHHhhCCCCEEEEEEcCCCCcC----------cchhHHHHHHHhHHHHHHHHHHhcCCcEEE---E
Q 017242 38 DQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLG----------AKARQLGFMLRGLRLLQRNIEETFQILFFL---F 104 (375)
Q Consensus 38 DLRl~DN~aL~~A~~~a~~~~~~vl~vfi~dp~~~~----------~~~~r~~Fl~esL~~L~~~L~~~~g~~L~v---~ 104 (375)
|.--....+|..|+..|.+.+.+|..+++.++.... .......-..+.|.++.+.+ ++.|++... .
T Consensus 30 D~s~~s~~al~~A~~lA~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~g~~~~~~~v~ 108 (294)
T 3loq_A 30 DLSENSFKVLEYLGDFKKVGVEEIGVLFVINLTKLSTVSGGIDIDHYIDEMSEKAEEVLPEVAQKI-EAAGIKAEVIKPF 108 (294)
T ss_dssp CSCTGGGGGGGGHHHHHHTTCCEEEEECCEECTTC-----CCCTTHHHHHHHHHHHHHHHHHHHHH-HHTTCEEEECSSC
T ss_pred CCCHHHHHHHHHHHHHHhhcCCEEEEEEEecCcccccccccccHHHHHHHHHHHHHHHHHHHHHHH-HHcCCCcceeEee
Confidence 455556778999999998888899999998764311 01222334556778888888 888998765 4
Q ss_pred -cCCccchHHHHHHHhCCCEEEEc
Q 017242 105 -QGEAEDNIPNFVRECGASLLVTD 127 (375)
Q Consensus 105 -~g~~~~~l~~l~~~~~~~~V~~~ 127 (375)
.|++.+.| .+++.+++.|+.-
T Consensus 109 ~~g~~~~~I--~a~~~~~DliV~G 130 (294)
T 3loq_A 109 PAGDPVVEI--IKASENYSFIAMG 130 (294)
T ss_dssp CEECHHHHH--HHHHTTSSEEEEE
T ss_pred ccCChhHhe--eeccCCCCEEEEc
Confidence 78898888 8889999999973
No 32
>3mt0_A Uncharacterized protein PA1789; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.58A {Pseudomonas aeruginosa}
Probab=81.24 E-value=4.5 Score=36.37 Aligned_cols=78 Identities=12% Similarity=0.001 Sum_probs=61.4
Q ss_pred CCCccCCHHHHHHHHHHhhCCCCEEEEEEcCCCCcCcchhHHHHHHHhHHHHHHHHHHhcCCcEEE--E-cCCccchHHH
Q 017242 38 DQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQRNIEETFQILFFL--F-QGEAEDNIPN 114 (375)
Q Consensus 38 DLRl~DN~aL~~A~~~a~~~~~~vl~vfi~dp~~~~~~~~r~~Fl~esL~~L~~~L~~~~g~~L~v--~-~g~~~~~l~~ 114 (375)
|.--....+|..|+..|.+.+.+|..+++.+|.. . .+.|.++.+.+ +..|++... . .|++.+.|.+
T Consensus 15 D~s~~s~~al~~A~~la~~~~a~l~ll~v~~~~~-----~-----~~~l~~~~~~~-~~~~~~~~~~~~~~g~~~~~i~~ 83 (290)
T 3mt0_A 15 EPDQLEGLALKRAQLIAGVTQSHLHLLVCEKRRD-----H-----SAALNDLAQEL-REEGYSVSTNQAWKDSLHQTIIA 83 (290)
T ss_dssp CSSCSCCHHHHHHHHHHHHHCCEEEEEEECSSSC-----C-----HHHHHHHHHHH-HHTTCCEEEEEECSSSHHHHHHH
T ss_pred CCCccchHHHHHHHHHHHhcCCeEEEEEeeCcHH-----H-----HHHHHHHHHHH-hhCCCeEEEEEEeCCCHHHHHHH
Confidence 6667788999999999988888999999987511 1 13466777778 777887644 3 4778999999
Q ss_pred HHHHhCCCEEEE
Q 017242 115 FVRECGASLLVT 126 (375)
Q Consensus 115 l~~~~~~~~V~~ 126 (375)
.+++.+++.|+.
T Consensus 84 ~a~~~~~dliV~ 95 (290)
T 3mt0_A 84 EQQAEGCGLIIK 95 (290)
T ss_dssp HHHHHTCSEEEE
T ss_pred HHHhcCCCEEEE
Confidence 999999999997
No 33
>3olq_A Universal stress protein E; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: UNL; 1.82A {Proteus mirabilis}
Probab=78.98 E-value=13 Score=33.62 Aligned_cols=118 Identities=14% Similarity=0.053 Sum_probs=73.2
Q ss_pred CCCccCCHHHHHHHHHHhhCCCCEEEEEEcCCCCcC----c-chhHH-------HHHHHhHHHHHHHHHHhcCCcE--EE
Q 017242 38 DQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLG----A-KARQL-------GFMLRGLRLLQRNIEETFQILF--FL 103 (375)
Q Consensus 38 DLRl~DN~aL~~A~~~a~~~~~~vl~vfi~dp~~~~----~-~~~r~-------~Fl~esL~~L~~~L~~~~g~~L--~v 103 (375)
|.--....+|.+|+..|.+.+.+|..+++.++.... . ..... .-..+.|+++.+.+ +..|++. .+
T Consensus 15 D~s~~s~~al~~A~~lA~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~v~~~~~~ 93 (319)
T 3olq_A 15 DPNQDDQPALRRAVYIVQRNGGRIKAFLPVYDLSYDMTTLLSPDERNAMRKGVINQKTAWIKQQARYY-LEAGIQIDIKV 93 (319)
T ss_dssp CTTCSCCHHHHHHHHHHHHHCCEEEEEEEECCGGGGCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHH-HHTTCCEEEEE
T ss_pred CCCcccHHHHHHHHHHHHHcCCeEEEEEEecccchhhccccChhhHHHHHHHHHHHHHHHHHHHHHHH-hhcCCeEEEEE
Confidence 666677899999999998888899999987542111 1 11111 11234455666666 6678765 44
Q ss_pred E-cCCccchHHHHHHHhCCCEEEEc---CCcchH--HHHHHHHHHHHcCCCceEEEecCCe
Q 017242 104 F-QGEAEDNIPNFVRECGASLLVTD---FSPLRE--IRRCKDKICNRVSDSVTIHEVDAHN 158 (375)
Q Consensus 104 ~-~g~~~~~l~~l~~~~~~~~V~~~---~~p~~~--~~~rd~~v~~~l~~~i~~~~~~~~~ 158 (375)
. .|++.+.|.+.+++.+++.|+.- ...... .-....+|.. ..+|++..+....
T Consensus 94 ~~~g~~~~~i~~~a~~~~~DLiV~G~~g~~~~~~~~~Gs~~~~vl~--~~~~PVlvv~~~~ 152 (319)
T 3olq_A 94 IWHNRPYEAIIEEVITDKHDLLIKMAHQHDKLGSLIFTPLDWQLLR--KCPAPVWMVKDKE 152 (319)
T ss_dssp EECSCHHHHHHHHHHHHTCSEEEEEEBCC--CCSCBCCHHHHHHHH--HCSSCEEEEESSC
T ss_pred EecCChHHHHHHHHHhcCCCEEEEecCcCchhhcccccccHHHHHh--cCCCCEEEecCcc
Confidence 5 79999999999999999999972 111100 0011223333 3478888886554
No 34
>3cis_A Uncharacterized protein; alpha/beta hydrolase, ATP, universal stress protein, unknown function; HET: ATP; 2.90A {Mycobacterium tuberculosis} PDB: 2jax_A*
Probab=75.49 E-value=4.9 Score=36.51 Aligned_cols=86 Identities=14% Similarity=0.086 Sum_probs=55.6
Q ss_pred CCCccCCHHHHHHHHHHhhCCCCEEEEEEcCCCCcC----cc-hhHHHHHHHhHHHHHHHHHHh--cCC--cEEEEcCCc
Q 017242 38 DQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLG----AK-ARQLGFMLRGLRLLQRNIEET--FQI--LFFLFQGEA 108 (375)
Q Consensus 38 DLRl~DN~aL~~A~~~a~~~~~~vl~vfi~dp~~~~----~~-~~r~~Fl~esL~~L~~~L~~~--~g~--~L~v~~g~~ 108 (375)
|..-....+|..|...|...+.+|..+++.++.... .. .....-..+.|.++.+.+ .+ .|+ ...+..|++
T Consensus 179 D~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~g~~ 257 (309)
T 3cis_A 179 DGSSASELATAIAFDEASRRNVDLVALHAWSDVDVSEWPGIDWPATQSMAEQVLAERLAGW-QERYPNVAITRVVVRDQP 257 (309)
T ss_dssp CSSHHHHHHHHHHHHHHHHTTCCEEEEEESCSSCCTTCSSCCHHHHHHHHHHHHHHHHTTH-HHHCTTSCEEEEEESSCH
T ss_pred CCChHHHHHHHHHHHHHHhcCCEEEEEEEeecccccCCCcccHHHHHHHHHHHHHHHHHHH-HhhCCCCcEEEEEEcCCH
Confidence 555566678999988888778899999998764211 00 111111223344444444 33 244 456778999
Q ss_pred cchHHHHHHHhCCCEEEE
Q 017242 109 EDNIPNFVRECGASLLVT 126 (375)
Q Consensus 109 ~~~l~~l~~~~~~~~V~~ 126 (375)
.+.|.+.++ +++.|+.
T Consensus 258 ~~~I~~~a~--~adliV~ 273 (309)
T 3cis_A 258 ARQLVQRSE--EAQLVVV 273 (309)
T ss_dssp HHHHHHHHT--TCSEEEE
T ss_pred HHHHHHhhC--CCCEEEE
Confidence 999999987 8999987
No 35
>3cis_A Uncharacterized protein; alpha/beta hydrolase, ATP, universal stress protein, unknown function; HET: ATP; 2.90A {Mycobacterium tuberculosis} PDB: 2jax_A*
Probab=70.89 E-value=14 Score=33.34 Aligned_cols=115 Identities=10% Similarity=0.064 Sum_probs=69.3
Q ss_pred CCCccCCHHHHHHHHHHhhCCCCEEEEEEcCCCCcC-----cc-h---hHHHHHHHhHHHHHHHHHHhc-----CCcE--
Q 017242 38 DQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLG-----AK-A---RQLGFMLRGLRLLQRNIEETF-----QILF-- 101 (375)
Q Consensus 38 DLRl~DN~aL~~A~~~a~~~~~~vl~vfi~dp~~~~-----~~-~---~r~~Fl~esL~~L~~~L~~~~-----g~~L-- 101 (375)
|.--....+|..|+..|.+.+.+|..+++.++.... .. . ....-..+.|.++.+.+ ++. |++.
T Consensus 27 D~s~~s~~al~~A~~lA~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~ 105 (309)
T 3cis_A 27 DDSPAAQVAVRWAARDAELRKIPLTLVHAVSPEVATWLEVPLPPGVLRWQQDHGRHLIDDALKVV-EQASLRAGPPTVHS 105 (309)
T ss_dssp CSSHHHHHHHHHHHHHHHHHTCCEEEEEECCCCCCCTTCCCCCHHHHHHHHHHHHHHHHHHHHHH-HHHCSSSCCSCEEE
T ss_pred CCCHHHHHHHHHHHHHHHhcCCcEEEEEEecCcccccccCCCCchhhHHHHHHHHHHHHHHHHHH-HHhcccCCCceEEE
Confidence 333345578999999888888899999998864321 01 1 11122344566677777 665 6654
Q ss_pred EEEcCCccchHHHHHHHhCCCEEEEc---CCcchH--HHHHHHHHHHHcCCCceEEEecCC
Q 017242 102 FLFQGEAEDNIPNFVRECGASLLVTD---FSPLRE--IRRCKDKICNRVSDSVTIHEVDAH 157 (375)
Q Consensus 102 ~v~~g~~~~~l~~l~~~~~~~~V~~~---~~p~~~--~~~rd~~v~~~l~~~i~~~~~~~~ 157 (375)
.+..|++.+.|.+.++ +++.|+.- ...... .-.....|.. ..+|++..+...
T Consensus 106 ~~~~g~~~~~I~~~a~--~~DliV~G~~g~~~~~~~~~Gs~~~~vl~--~~~~PVlvv~~~ 162 (309)
T 3cis_A 106 EIVPAAAVPTLVDMSK--DAVLMVVGCLGSGRWPGRLLGSVSSGLLR--HAHCPVVIIHDE 162 (309)
T ss_dssp EEESSCHHHHHHHHGG--GEEEEEEESSCTTCCTTCCSCHHHHHHHH--HCSSCEEEECTT
T ss_pred EEecCCHHHHHHHHhc--CCCEEEECCCCCccccccccCcHHHHHHH--hCCCCEEEEcCC
Confidence 4567999999988876 78888872 111100 0011223333 336888887654
No 36
>3ab8_A Putative uncharacterized protein TTHA0350; tandem-type universal stress protein, unknown function; HET: ATP; 1.70A {Thermus thermophilus} PDB: 3ab7_A*
Probab=70.06 E-value=7.7 Score=34.17 Aligned_cols=82 Identities=18% Similarity=0.028 Sum_probs=56.2
Q ss_pred cCCHHHHHHHHHHhhCCCCEEEEEEcCCCCcC------c--------------chhHHHHHHHhHHHHHHHHHHhcCCcE
Q 017242 42 RDNWALIHAVDQANKNNVPVAVAFNLFDQFLG------A--------------KARQLGFMLRGLRLLQRNIEETFQILF 101 (375)
Q Consensus 42 ~DN~aL~~A~~~a~~~~~~vl~vfi~dp~~~~------~--------------~~~r~~Fl~esL~~L~~~L~~~~g~~L 101 (375)
....+|..|+..|.+.+.+|..+++.++.... . ......-..+.|..+.+.+ ++.|++.
T Consensus 12 ~s~~al~~A~~lA~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~g~~~ 90 (268)
T 3ab8_A 12 QARGAEALAEWLAYKLSAPLTVLFVVDTRLARIPELLDFGALTVPVPVLRTELERALALRGEAVLERVRQSA-LAAGVAV 90 (268)
T ss_dssp GGHHHHHHHHHHHHHHTCCEEEEEEEEHHHHTHHHHC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHTTCCE
T ss_pred HHHHHHHHHHHHHHHhCCcEEEEEEeccCCcccccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhCCCCe
Confidence 34578999999888888899999987642110 0 0011122344566677777 7778764
Q ss_pred --EEEcCCccchHHHHHHHhCCCEEEE
Q 017242 102 --FLFQGEAEDNIPNFVRECGASLLVT 126 (375)
Q Consensus 102 --~v~~g~~~~~l~~l~~~~~~~~V~~ 126 (375)
.+..|++.+.|.+. +.+++.|+.
T Consensus 91 ~~~~~~g~~~~~I~~~--~~~~dliV~ 115 (268)
T 3ab8_A 91 EAVLEEGVPHEAILRR--ARAADLLVL 115 (268)
T ss_dssp EEEEEEECHHHHHHHH--HTTCSEEEE
T ss_pred EEEEecCCHHHHHHhh--ccCCCEEEE
Confidence 45679999888887 779999987
No 37
>3rjz_A N-type ATP pyrophosphatase superfamily; structural genomics, PSI-biology, northeast structural genom consortium, NESG, alpha-beta protein; 2.30A {Pyrococcus furiosus} SCOP: c.26.2.1 PDB: 3h7e_A 3rk0_A* 3rk1_A* 1ru8_A 2d13_A
Probab=65.99 E-value=11 Score=33.43 Aligned_cols=90 Identities=12% Similarity=0.136 Sum_probs=48.5
Q ss_pred hhCCCCEEEEEEcCCCCcCcchhHHHHHHHhHHHHHHHHHHhcCCcEEEEc--CC---ccchHHHHHHHhCCCEEEE-cC
Q 017242 55 NKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQ--GE---AEDNIPNFVRECGASLLVT-DF 128 (375)
Q Consensus 55 ~~~~~~vl~vfi~dp~~~~~~~~r~~Fl~esL~~L~~~L~~~~g~~L~v~~--g~---~~~~l~~l~~~~~~~~V~~-~~ 128 (375)
.+.|..|++++..-+... .+..|-...+..++... +.+|++++++. |+ ..+.+.+++++.+|+.|++ +.
T Consensus 25 ~~~G~eV~~L~~~~~~~~----~s~~~h~~~~e~a~~~A-~~LGIpl~~v~~~g~~~~e~e~l~~~l~~~~i~~vv~Gdi 99 (237)
T 3rjz_A 25 IKNRFSVKFLVTMVSENE----ESYMYHTINANLTDLQA-RALGIPLVKGFTQGEKEKEVEDLKRVLSGLKIQGIVAGAL 99 (237)
T ss_dssp HHTTCEEEEEEEEECC------------CCSSSHHHHHH-HHHTCCEEEEEC------CHHHHHHHHTTSCCSEEECC--
T ss_pred HHcCCeEEEEEEEcCCCC----CccccCCccHHHHHHHH-HHcCCCEEEEECCCCchHHHHHHHHHHHhcCCcEEEECCc
Confidence 346777888765433211 11111112244555556 77799999875 33 2345556667778999998 42
Q ss_pred -CcchHHHHHHHHHHHHcCCCceEEE
Q 017242 129 -SPLREIRRCKDKICNRVSDSVTIHE 153 (375)
Q Consensus 129 -~p~~~~~~rd~~v~~~l~~~i~~~~ 153 (375)
..+ .+.|.+++...+ |++...
T Consensus 100 ~s~y--qr~r~e~vc~~~--gl~~~~ 121 (237)
T 3rjz_A 100 ASKY--QRKRIEKVAKEL--GLEVYT 121 (237)
T ss_dssp -CCS--HHHHHHHHHHHT--TCEEEC
T ss_pred chHH--HHHHHHHHHHHc--CCEEEc
Confidence 222 356667776665 665443
No 38
>3ab8_A Putative uncharacterized protein TTHA0350; tandem-type universal stress protein, unknown function; HET: ATP; 1.70A {Thermus thermophilus} PDB: 3ab7_A*
Probab=57.52 E-value=15 Score=32.31 Aligned_cols=77 Identities=17% Similarity=0.041 Sum_probs=56.0
Q ss_pred CCCccCCHHHHHHHHHHhhCCCCEEEEEEcCCCCcCcchhHHHHHHHhHHHHHHHHHHhcCCcE--EEEcCCccchHHHH
Q 017242 38 DQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQRNIEETFQILF--FLFQGEAEDNIPNF 115 (375)
Q Consensus 38 DLRl~DN~aL~~A~~~a~~~~~~vl~vfi~dp~~~~~~~~r~~Fl~esL~~L~~~L~~~~g~~L--~v~~g~~~~~l~~l 115 (375)
|..-....+|..|...|...+.+|..+++.++. . -..+.+.++.+.| ++.|++. .+..|++.+.|.+.
T Consensus 162 d~s~~~~~al~~a~~la~~~~a~l~ll~v~~~~-----~----~~~~~l~~~~~~l-~~~~~~~~~~~~~g~~~~~i~~~ 231 (268)
T 3ab8_A 162 DASESAVRALHALAPLARALGLGVRVVSVHEDP-----A----RAEAWALEAEAYL-RDHGVEASALVLGGDAADHLLRL 231 (268)
T ss_dssp CSCHHHHHHHHHHHHHHHHHTCCEEEEEECSSH-----H----HHHHHHHHHHHHH-HHTTCCEEEEEECSCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhhhcCCCEEEEEEEcCcH-----H----HHHHHHHHHHHHH-HHcCCceEEEEeCCChHHHHHHH
Confidence 555555678888888777667789899998752 1 1235577888888 8888765 45679898999888
Q ss_pred HHHhCCCEEEE
Q 017242 116 VRECGASLLVT 126 (375)
Q Consensus 116 ~~~~~~~~V~~ 126 (375)
+++. +.|+.
T Consensus 232 a~~~--dliV~ 240 (268)
T 3ab8_A 232 QGPG--DLLAL 240 (268)
T ss_dssp CCTT--EEEEE
T ss_pred HHhC--CEEEE
Confidence 8876 66665
No 39
>3fvv_A Uncharacterized protein; unknown function, structural genomics, PSI,MCSG, protein STR initiative, midwest center for structural genomics; 2.10A {Bordetella pertussis}
Probab=44.70 E-value=23 Score=29.87 Aligned_cols=43 Identities=14% Similarity=-0.017 Sum_probs=33.1
Q ss_pred HHhHHHHHHHHHHhcCCcEEEEcCCccchHHHHHHHhCCCEEEE
Q 017242 83 LRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVT 126 (375)
Q Consensus 83 ~esL~~L~~~L~~~~g~~L~v~~g~~~~~l~~l~~~~~~~~V~~ 126 (375)
..++.++-+.| ++.|+++.|+.+.+...+..+++..++..++.
T Consensus 94 ~~g~~~~l~~l-~~~g~~~~ivS~~~~~~~~~~~~~~g~~~~~~ 136 (232)
T 3fvv_A 94 TVQAVDVVRGH-LAAGDLCALVTATNSFVTAPIARAFGVQHLIA 136 (232)
T ss_dssp CHHHHHHHHHH-HHTTCEEEEEESSCHHHHHHHHHHTTCCEEEE
T ss_pred CHHHHHHHHHH-HHCCCEEEEEeCCCHHHHHHHHHHcCCCEEEE
Confidence 56677777778 88888888888888777778888888876654
No 40
>3dx5_A Uncharacterized protein ASBF; beta-alpha barrel, petrobactin synthesis, ASB locus, structu genomics, PSI-2, protein structure initiative; HET: MSE DHB TRS; 2.12A {Bacillus anthracis}
Probab=39.70 E-value=1e+02 Score=26.96 Aligned_cols=77 Identities=9% Similarity=-0.020 Sum_probs=42.5
Q ss_pred HHHHHHHHhhCCCCEEEEEEcCCCCcCcchhHHHHHHHhHHHHHHHHHHhcCCcEEEEcC-----CccchHHHHHHHhCC
Q 017242 47 LIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQG-----EAEDNIPNFVRECGA 121 (375)
Q Consensus 47 L~~A~~~a~~~~~~vl~vfi~dp~~~~~~~~r~~Fl~esL~~L~~~L~~~~g~~L~v~~g-----~~~~~l~~l~~~~~~ 121 (375)
+..+++.|...|.+.+.++...+.........+..+.++|+.+.+.. ++.|+.|.+-.. ...+.+.++++..+-
T Consensus 86 ~~~~i~~A~~lG~~~v~~~~g~~~~~~~~~~~~~~~~~~l~~l~~~a-~~~Gv~l~lE~~~~~~~~~~~~~~~l~~~~~~ 164 (286)
T 3dx5_A 86 CEQLAILANWFKTNKIRTFAGQKGSADFSQQERQEYVNRIRMICELF-AQHNMYVLLETHPNTLTDTLPSTLELLGEVDH 164 (286)
T ss_dssp HHHHHHHHHHHTCCEEEECSCSSCGGGSCHHHHHHHHHHHHHHHHHH-HHTTCEEEEECCTTSTTSSHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHhCCCEEEEcCCCCCcccCcHHHHHHHHHHHHHHHHHH-HHhCCEEEEecCCCcCcCCHHHHHHHHHhcCC
Confidence 44455555666767665543322111122344566777888887777 777887766431 123445566666653
Q ss_pred CEE
Q 017242 122 SLL 124 (375)
Q Consensus 122 ~~V 124 (375)
..|
T Consensus 165 ~~v 167 (286)
T 3dx5_A 165 PNL 167 (286)
T ss_dssp TTE
T ss_pred CCe
Confidence 333
No 41
>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding PROT alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5}
Probab=38.64 E-value=1.3e+02 Score=26.96 Aligned_cols=73 Identities=7% Similarity=0.047 Sum_probs=47.3
Q ss_pred HHHHhHHHHHHHHHHhcCCcEEEEcCCc-----cchHHHHHHH-hCCCEEEEcCCcchHHHHHHHHHHHHcCCCceEEEe
Q 017242 81 FMLRGLRLLQRNIEETFQILFFLFQGEA-----EDNIPNFVRE-CGASLLVTDFSPLREIRRCKDKICNRVSDSVTIHEV 154 (375)
Q Consensus 81 Fl~esL~~L~~~L~~~~g~~L~v~~g~~-----~~~l~~l~~~-~~~~~V~~~~~p~~~~~~rd~~v~~~l~~~i~~~~~ 154 (375)
|..+-+..+++.+ +++|..+.+...+. .+.+..++.. .+++.|+..-.... -...+.+..+.||++..+
T Consensus 18 f~~~~~~g~~~~a-~~~g~~~~~~~~~~~~~~~~~~i~~~i~~~~~vDgiIi~~~~~~----~~~~~~~~~~~giPvV~~ 92 (350)
T 3h75_A 18 FWVSYSQFMQAAA-RDLGLDLRILYAERDPQNTLQQARELFQGRDKPDYLMLVNEQYV----APQILRLSQGSGIKLFIV 92 (350)
T ss_dssp HHHHHHHHHHHHH-HHHTCEEEEEECTTCHHHHHHHHHHHHHSSSCCSEEEEECCSSH----HHHHHHHHTTSCCEEEEE
T ss_pred HHHHHHHHHHHHH-HHcCCeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEeCchhh----HHHHHHHHHhCCCcEEEE
Confidence 6677788888889 89999998875432 2345556665 68998887422211 112333333679999999
Q ss_pred cCCe
Q 017242 155 DAHN 158 (375)
Q Consensus 155 ~~~~ 158 (375)
+...
T Consensus 93 ~~~~ 96 (350)
T 3h75_A 93 NSPL 96 (350)
T ss_dssp ESCC
T ss_pred cCCC
Confidence 8653
No 42
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=37.12 E-value=1e+02 Score=23.57 Aligned_cols=52 Identities=15% Similarity=0.318 Sum_probs=29.6
Q ss_pred EEcCCccchHHHHHHHh---CCCEEEEcCCcchHHHHHHHHHHHHcCCCceEEEecC
Q 017242 103 LFQGEAEDNIPNFVREC---GASLLVTDFSPLREIRRCKDKICNRVSDSVTIHEVDA 156 (375)
Q Consensus 103 v~~g~~~~~l~~l~~~~---~~~~V~~~~~p~~~~~~rd~~v~~~l~~~i~~~~~~~ 156 (375)
++.....++|.+++++. |+..|.. |+-.. +.+|.+++.+.-++|+.+.++.+
T Consensus 6 vvfssdpeilkeivreikrqgvrvvll-ysdqd-ekrrrerleefekqgvdvrtved 60 (162)
T 2l82_A 6 VVFSSDPEILKEIVREIKRQGVRVVLL-YSDQD-EKRRRERLEEFEKQGVDVRTVED 60 (162)
T ss_dssp EEEESCHHHHHHHHHHHHHTTCEEEEE-ECCSC-HHHHHHHHHHHHTTTCEEEECCS
T ss_pred EEecCCHHHHHHHHHHHHhCCeEEEEE-ecCch-HHHHHHHHHHHHHcCCceeeecc
Confidence 33333346777776654 5544432 22211 34566677765578999988763
No 43
>3ixr_A Bacterioferritin comigratory protein; alpha beta protein, oxidoreductase; 1.60A {Xylella fastidiosa}
Probab=32.60 E-value=1e+02 Score=25.05 Aligned_cols=40 Identities=13% Similarity=0.140 Sum_probs=34.2
Q ss_pred HHhHHHHHHHHHHhcCCcEEEEcCCccchHHHHHHHhCCCE
Q 017242 83 LRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASL 123 (375)
Q Consensus 83 ~esL~~L~~~L~~~~g~~L~v~~g~~~~~l~~l~~~~~~~~ 123 (375)
+..|+++.+++ ++.|+.++.+..+..+.+.++++++++.-
T Consensus 71 l~~l~~l~~~~-~~~~~~vv~Vs~D~~~~~~~~~~~~~~~f 110 (179)
T 3ixr_A 71 GLEFNLLLPQF-EQINATVLGVSRDSVKSHDSFCAKQGFTF 110 (179)
T ss_dssp HHHHHHHHHHH-HTTTEEEEEEESCCHHHHHHHHHHHTCCS
T ss_pred HHHHHHHHHHH-HHCCCEEEEEcCCCHHHHHHHHHHcCCce
Confidence 56789999999 99999988888888888999999988763
No 44
>3n07_A 3-deoxy-D-manno-octulosonate 8-phosphate phosphat; structural genomics, phosphatase, PSI-2, protein structure initiative; HET: MSE; 1.76A {Vibrio cholerae}
Probab=32.35 E-value=1.4e+02 Score=24.89 Aligned_cols=39 Identities=15% Similarity=0.222 Sum_probs=34.0
Q ss_pred HHHHHhcCCcEEEEcCCccchHHHHHHHhCCCEEEEcCCc
Q 017242 91 RNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSP 130 (375)
Q Consensus 91 ~~L~~~~g~~L~v~~g~~~~~l~~l~~~~~~~~V~~~~~p 130 (375)
+.| ++.|+++.|+.|++...+..+++..++..++....|
T Consensus 62 ~~L-~~~G~~~~ivT~~~~~~~~~~l~~lgi~~~~~~~k~ 100 (195)
T 3n07_A 62 KAL-MNAGIEIAIITGRRSQIVENRMKALGISLIYQGQDD 100 (195)
T ss_dssp HHH-HHTTCEEEEECSSCCHHHHHHHHHTTCCEEECSCSS
T ss_pred HHH-HHCCCEEEEEECcCHHHHHHHHHHcCCcEEeeCCCC
Confidence 567 889999999999999999999999999998865544
No 45
>3rfu_A Copper efflux ATPase; alpha helical, CPC, CXXC, ATP-binding, hydrolase, ION transp magnesium, Cu+, membrane, metal-binding; 3.20A {Legionella pneumophila subsp}
Probab=31.25 E-value=56 Score=33.90 Aligned_cols=45 Identities=11% Similarity=0.178 Sum_probs=38.4
Q ss_pred HHHHHHHHHhcCCcEEEEcCCccchHHHHHHHhCCCEEEEcCCcch
Q 017242 87 RLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLR 132 (375)
Q Consensus 87 ~~L~~~L~~~~g~~L~v~~g~~~~~l~~l~~~~~~~~V~~~~~p~~ 132 (375)
.+.-++| ++.|+.+.+..|+.......++++.+++.++.+..|..
T Consensus 560 ~~aI~~L-~~~Gi~v~mlTGd~~~~a~~ia~~lgi~~v~a~~~P~~ 604 (736)
T 3rfu_A 560 PETILEL-QQSGIEIVMLTGDSKRTAEAVAGTLGIKKVVAEIMPED 604 (736)
T ss_dssp HHHHHHH-HHHTCEEEEECSSCHHHHHHHHHHHTCCCEECSCCHHH
T ss_pred HHHHHHH-HHCCCeEEEECCCCHHHHHHHHHHcCCCEEEEecCHHH
Confidence 3444566 88899999999999999999999999999999877753
No 46
>3mmz_A Putative HAD family hydrolase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 1.84A {Streptomyces avermitilis}
Probab=30.60 E-value=1.7e+02 Score=23.57 Aligned_cols=40 Identities=5% Similarity=0.082 Sum_probs=33.7
Q ss_pred HHHHHHHhcCCcEEEEcCCccchHHHHHHHhCCCEEEEcCCc
Q 017242 89 LQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSP 130 (375)
Q Consensus 89 L~~~L~~~~g~~L~v~~g~~~~~l~~l~~~~~~~~V~~~~~p 130 (375)
+-+.| ++.|+++.++.|.+...+..+++..++. ++....|
T Consensus 47 ~l~~L-~~~g~~~~i~T~~~~~~~~~~~~~lgi~-~~~~~~~ 86 (176)
T 3mmz_A 47 GIAAL-RKSGLTMLILSTEQNPVVAARARKLKIP-VLHGIDR 86 (176)
T ss_dssp HHHHH-HHTTCEEEEEESSCCHHHHHHHHHHTCC-EEESCSC
T ss_pred HHHHH-HHCCCeEEEEECcChHHHHHHHHHcCCe-eEeCCCC
Confidence 55677 8899999999999999999999999999 6655443
No 47
>3mn1_A Probable YRBI family phosphatase; structural genomics, PSI, protein structure initiative, NYSG phosphatase; 1.80A {Pseudomonas syringae PV} PDB: 3nrj_A
Probab=30.48 E-value=57 Score=26.97 Aligned_cols=39 Identities=8% Similarity=0.020 Sum_probs=34.3
Q ss_pred HHHHHHHhcCCcEEEEcCCccchHHHHHHHhCCCEEEEcC
Q 017242 89 LQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDF 128 (375)
Q Consensus 89 L~~~L~~~~g~~L~v~~g~~~~~l~~l~~~~~~~~V~~~~ 128 (375)
+-+.| ++.|+++.++.|.+...+..+++..++..++...
T Consensus 54 ~l~~L-~~~g~~~~i~T~~~~~~~~~~~~~lgl~~~f~~~ 92 (189)
T 3mn1_A 54 GIKML-IASGVTTAIISGRKTAIVERRAKSLGIEHLFQGR 92 (189)
T ss_dssp HHHHH-HHTTCEEEEECSSCCHHHHHHHHHHTCSEEECSC
T ss_pred HHHHH-HHCCCEEEEEECcChHHHHHHHHHcCCHHHhcCc
Confidence 55678 8899999999999999999999999999888653
No 48
>3cqj_A L-ribulose-5-phosphate 3-epimerase ULAE; TIM-barrel, isomerase, phosphate-binding motif; 2.04A {Escherichia coli} PDB: 3cqi_A 3cqh_A 3cqk_A
Probab=29.56 E-value=1.9e+02 Score=25.25 Aligned_cols=78 Identities=9% Similarity=-0.007 Sum_probs=49.8
Q ss_pred HHHHHHHHhhCCCCEEEEEEcCCCCcCcchhHHHHHHHhHHHHHHHHHHhcCCcEEEEcCC-----ccchHHHHHHHhCC
Q 017242 47 LIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGE-----AEDNIPNFVRECGA 121 (375)
Q Consensus 47 L~~A~~~a~~~~~~vl~vfi~dp~~~~~~~~r~~Fl~esL~~L~~~L~~~~g~~L~v~~g~-----~~~~l~~l~~~~~~ 121 (375)
+..+++.|...|.+.+.+...++.........+..+.++|+.+.+.. ++.|+.|.+-.-. ..+.+.++++..+-
T Consensus 110 ~~~~i~~A~~lG~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a-~~~Gv~l~lEn~~~~~~~~~~~~~~l~~~v~~ 188 (295)
T 3cqj_A 110 MRKAIQFAQDVGIRVIQLAGYDVYYQEANNETRRRFRDGLKESVEMA-SRAQVTLAMEIMDYPLMNSISKALGYAHYLNN 188 (295)
T ss_dssp HHHHHHHHHHHTCCEEEECCCSCSSSCCCHHHHHHHHHHHHHHHHHH-HHHTCEEEEECCSSGGGCSHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHcCCCEEEECCCCCCcCcCHHHHHHHHHHHHHHHHHHH-HHhCCEEEEeeCCCcccCCHHHHHHHHHhcCC
Confidence 56666777777888765543322111123455677889999999999 9999998775322 23556677777655
Q ss_pred CEEE
Q 017242 122 SLLV 125 (375)
Q Consensus 122 ~~V~ 125 (375)
..|-
T Consensus 189 ~~vg 192 (295)
T 3cqj_A 189 PWFQ 192 (295)
T ss_dssp TTEE
T ss_pred CCeE
Confidence 4443
No 49
>3e8m_A Acylneuraminate cytidylyltransferase; 2-keto-3-deoxynononic acid 9-phosphate phosphohydrolase, nucleotidyltransferase; HET: PEG PG4 EDO PGE; 1.10A {Bacteroides thetaiotaomicron} PDB: 3e84_A 3e81_A*
Probab=28.75 E-value=1.9e+02 Score=22.55 Aligned_cols=42 Identities=10% Similarity=-0.051 Sum_probs=35.3
Q ss_pred HHHHHHHhcCCcEEEEcCCccchHHHHHHHhCCCEEEEcCCcc
Q 017242 89 LQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPL 131 (375)
Q Consensus 89 L~~~L~~~~g~~L~v~~g~~~~~l~~l~~~~~~~~V~~~~~p~ 131 (375)
+-+.| ++.|+++.++.|.+......+++..++..++....|.
T Consensus 39 ~l~~l-~~~g~~~~i~T~~~~~~~~~~~~~~gl~~~~~~~kpk 80 (164)
T 3e8m_A 39 GIFWA-HNKGIPVGILTGEKTEIVRRRAEKLKVDYLFQGVVDK 80 (164)
T ss_dssp HHHHH-HHTTCCEEEECSSCCHHHHHHHHHTTCSEEECSCSCH
T ss_pred HHHHH-HHCCCEEEEEeCCChHHHHHHHHHcCCCEeecccCCh
Confidence 45667 8889999999999999999999999999888755453
No 50
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=28.61 E-value=2.6e+02 Score=23.88 Aligned_cols=73 Identities=10% Similarity=0.120 Sum_probs=44.8
Q ss_pred HHHHHhHHHHHHHHHHhcCCcEEEEcCCc--c---chHHHHHHHhCCCEEEEcCCcchHHHHHHHHHHHHcCCCceEEEe
Q 017242 80 GFMLRGLRLLQRNIEETFQILFFLFQGEA--E---DNIPNFVRECGASLLVTDFSPLREIRRCKDKICNRVSDSVTIHEV 154 (375)
Q Consensus 80 ~Fl~esL~~L~~~L~~~~g~~L~v~~g~~--~---~~l~~l~~~~~~~~V~~~~~p~~~~~~rd~~v~~~l~~~i~~~~~ 154 (375)
.|..+-+..+++.+ ++.|..+.+...+. . +.+..+ ...+++.|+..-... ...+..+.+..+.||++..+
T Consensus 18 ~~~~~~~~gi~~~a-~~~g~~~~~~~~~~~~~~~~~~~~~l-~~~~vdgiIi~~~~~---~~~~~~~~~~~~~~iPvV~~ 92 (291)
T 3l49_A 18 DWDLKAYQAQIAEI-ERLGGTAIALDAGRNDQTQVSQIQTL-IAQKPDAIIEQLGNL---DVLNPWLQKINDAGIPLFTV 92 (291)
T ss_dssp HHHHHHHHHHHHHH-HHTTCEEEEEECTTCHHHHHHHHHHH-HHHCCSEEEEESSCH---HHHHHHHHHHHHTTCCEEEE
T ss_pred hHHHHHHHHHHHHH-HHcCCEEEEEcCCCCHHHHHHHHHHH-HHcCCCEEEEeCCCh---hhhHHHHHHHHHCCCcEEEe
Confidence 36677888899999 99999998875332 1 223333 345899888642111 01122333333568999998
Q ss_pred cCC
Q 017242 155 DAH 157 (375)
Q Consensus 155 ~~~ 157 (375)
+..
T Consensus 93 ~~~ 95 (291)
T 3l49_A 93 DTA 95 (291)
T ss_dssp SCC
T ss_pred cCC
Confidence 764
No 51
>3ij5_A 3-deoxy-D-manno-octulosonate 8-phosphate phosphat; IDP022 hydrolase, lipopolysaccharide biosynthesis, magnesium, STRU genomics; 1.95A {Yersinia pestis}
Probab=28.45 E-value=62 Score=27.54 Aligned_cols=41 Identities=17% Similarity=0.085 Sum_probs=35.6
Q ss_pred HHHHHHHhcCCcEEEEcCCccchHHHHHHHhCCCEEEEcCCc
Q 017242 89 LQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSP 130 (375)
Q Consensus 89 L~~~L~~~~g~~L~v~~g~~~~~l~~l~~~~~~~~V~~~~~p 130 (375)
+-+.| ++.|+++.|+.|++......+++..++..++....+
T Consensus 84 ~L~~L-~~~G~~l~I~T~~~~~~~~~~l~~lgi~~~f~~~k~ 124 (211)
T 3ij5_A 84 GIRCL-ITSDIDVAIITGRRAKLLEDRANTLGITHLYQGQSD 124 (211)
T ss_dssp HHHHH-HHTTCEEEEECSSCCHHHHHHHHHHTCCEEECSCSS
T ss_pred HHHHH-HHCCCEEEEEeCCCHHHHHHHHHHcCCchhhcccCC
Confidence 56778 899999999999999999999999999998875433
No 52
>3n1u_A Hydrolase, HAD superfamily, subfamily III A; structural genomics, PSI-2; 1.80A {Legionella pneumophila} SCOP: c.108.1.0
Probab=27.98 E-value=1.9e+02 Score=23.66 Aligned_cols=41 Identities=5% Similarity=-0.014 Sum_probs=34.8
Q ss_pred HHHHHHhcCCcEEEEcCCccchHHHHHHHhCCCEEEEcCCcc
Q 017242 90 QRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPL 131 (375)
Q Consensus 90 ~~~L~~~~g~~L~v~~g~~~~~l~~l~~~~~~~~V~~~~~p~ 131 (375)
-+.| ++.|+++.++.+++...+..+++..++..++....|.
T Consensus 55 l~~L-~~~g~~~~ivTn~~~~~~~~~l~~lgl~~~~~~~kpk 95 (191)
T 3n1u_A 55 LKLL-MAAGIQVAIITTAQNAVVDHRMEQLGITHYYKGQVDK 95 (191)
T ss_dssp HHHH-HHTTCEEEEECSCCSHHHHHHHHHHTCCEEECSCSSC
T ss_pred HHHH-HHCCCeEEEEeCcChHHHHHHHHHcCCccceeCCCCh
Confidence 4567 8899999999999999999999999999888755443
No 53
>3ngf_A AP endonuclease, family 2; structural genomics, seattle structural genomics center for infectious disease, ssgcid, TIM barrel; 1.80A {Brucella melitensis biovar abortus} SCOP: c.1.15.0
Probab=27.35 E-value=2e+02 Score=24.85 Aligned_cols=78 Identities=9% Similarity=0.010 Sum_probs=51.5
Q ss_pred HHHHHHHHHhhCCCCEEEEEEcCCCCcCcchhHHHHHHHhHHHHHHHHHHhcCCcEEEEc-------CC---ccchHHHH
Q 017242 46 ALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQ-------GE---AEDNIPNF 115 (375)
Q Consensus 46 aL~~A~~~a~~~~~~vl~vfi~dp~~~~~~~~r~~Fl~esL~~L~~~L~~~~g~~L~v~~-------g~---~~~~l~~l 115 (375)
.+..+++.|...|.+.+.+....|.. ......+..+.++|+.+.+.. ++.|+.|.+-. +. ..+.+.++
T Consensus 94 ~~~~~i~~A~~lGa~~v~~~~g~~~~-~~~~~~~~~~~~~l~~l~~~a-~~~Gv~l~lE~~n~~~~~~~~~~~~~~~~~l 171 (269)
T 3ngf_A 94 NVDIALHYALALDCRTLHAMSGITEG-LDRKACEETFIENFRYAADKL-APHGITVLVEPLNTRNMPGYFIVHQLEAVGL 171 (269)
T ss_dssp HHHHHHHHHHHTTCCEEECCBCBCTT-SCHHHHHHHHHHHHHHHHHHH-GGGTCEEEECCCCTTTSTTBSCCCHHHHHHH
T ss_pred HHHHHHHHHHHcCCCEEEEccCCCCC-CCHHHHHHHHHHHHHHHHHHH-HHcCCEEEEeeCCcccCccchhcCHHHHHHH
Confidence 35666777777888876554332211 123456778899999999999 99999988752 22 23456677
Q ss_pred HHHhCCCEEE
Q 017242 116 VRECGASLLV 125 (375)
Q Consensus 116 ~~~~~~~~V~ 125 (375)
++..+-..|-
T Consensus 172 ~~~v~~~~vg 181 (269)
T 3ngf_A 172 VKRVNRPNVA 181 (269)
T ss_dssp HHHHCCTTEE
T ss_pred HHHhCCCCCC
Confidence 8877655444
No 54
>3ayv_A Putative uncharacterized protein TTHB071; structural genomics, riken structural genomics/proteomics in RSGI, TIM barrel, unknown function; 1.85A {Thermus thermophilus} PDB: 3ayt_A
Probab=26.65 E-value=2.1e+02 Score=24.27 Aligned_cols=73 Identities=14% Similarity=0.107 Sum_probs=49.0
Q ss_pred HHHHHHHHhhCCCCEEEEEEcCCCCcC--cchhHHHHHHHhHHHHHHHHHHhcCCcEEEEc--CCccchHHHHHHHhC
Q 017242 47 LIHAVDQANKNNVPVAVAFNLFDQFLG--AKARQLGFMLRGLRLLQRNIEETFQILFFLFQ--GEAEDNIPNFVRECG 120 (375)
Q Consensus 47 L~~A~~~a~~~~~~vl~vfi~dp~~~~--~~~~r~~Fl~esL~~L~~~L~~~~g~~L~v~~--g~~~~~l~~l~~~~~ 120 (375)
+..+++.|...|.+.+.+..-...... .....+..+.++|+.+.+.. ++.|+.|.+-. +...+.+.++++..+
T Consensus 78 ~~~~i~~A~~lGa~~v~~~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~a-~~~gv~l~lEn~~~~~~~~~~~l~~~v~ 154 (254)
T 3ayv_A 78 LLFGLDRAAELGADRAVFHSGIPHGRTPEEALERALPLAEALGLVVRRA-RTLGVRLLLENSHEPHPEALRPVLEAHA 154 (254)
T ss_dssp HHHHHHHHHHTTCSEEEEECCCCTTCCHHHHHHTHHHHHHHTHHHHHHH-HHHTCEEEEECSSCSSGGGTHHHHHHHT
T ss_pred HHHHHHHHHHhCCCEEEECCCCCcccccccHHHHHHHHHHHHHHHHHHH-hhcCCEEEEcCCCCCCHHHHHHHHHhcC
Confidence 456667777788888766543211110 12344677889999999999 89999988753 334566778888877
No 55
>3ujp_A Mn transporter subunit; manganese binding protein, metal binding protein; 2.70A {Synechocystis SP} PDB: 1xvl_A 3v63_A
Probab=26.28 E-value=2e+02 Score=26.01 Aligned_cols=68 Identities=10% Similarity=0.156 Sum_probs=44.1
Q ss_pred HHHHHhHHHHHHHHHHhc--C-----CcEEEEcCCccchHHHHHHHhCCCEEEE-----cCCcchHHHHHHHHHHHHc-C
Q 017242 80 GFMLRGLRLLQRNIEETF--Q-----ILFFLFQGEAEDNIPNFVRECGASLLVT-----DFSPLREIRRCKDKICNRV-S 146 (375)
Q Consensus 80 ~Fl~esL~~L~~~L~~~~--g-----~~L~v~~g~~~~~l~~l~~~~~~~~V~~-----~~~p~~~~~~rd~~v~~~l-~ 146 (375)
.=+.+.|.+|++++ ++. + -.+++.+ +.+.-|++.+|...+.. +.+|. .++..++.+.+ +
T Consensus 166 ~~~~~~L~~Ld~~~-~~~l~~~p~~~~~~v~~H----~af~Yfa~~yGl~~~~~~~i~~~~ePs---~~~l~~l~~~ik~ 237 (307)
T 3ujp_A 166 AVYSEQLKAIDRQL-GADLEQVPANQRFLVSCE----GAFSYLARDYGMEEIYMWPINAEQQFT---PKQVQTVIEEVKT 237 (307)
T ss_dssp HHHHHHHHHHHHHH-HHHHSSSCGGGCEEEEEE----STTHHHHHHTTCEEEEEESSCCSSCCC---HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHH-HHHHhhccccCCEEEEEC----chHHHHHHHCCCcEEEeeccCCCCCCC---HHHHHHHHHHHHh
Confidence 33455677777776 542 2 2244433 57889999999998754 23454 34556777777 7
Q ss_pred CCceEEEec
Q 017242 147 DSVTIHEVD 155 (375)
Q Consensus 147 ~~i~~~~~~ 155 (375)
.+|++..+.
T Consensus 238 ~~v~~If~e 246 (307)
T 3ujp_A 238 NNVPTIFCE 246 (307)
T ss_dssp TTCSEEEEE
T ss_pred cCCcEEEEe
Confidence 789888775
No 56
>3j08_A COPA, copper-exporting P-type ATPase A; copper transporter, adenosine triphosph archaeal proteins, cation transport proteins; 10.00A {Archaeoglobus fulgidus}
Probab=26.10 E-value=69 Score=32.55 Aligned_cols=47 Identities=13% Similarity=0.228 Sum_probs=40.1
Q ss_pred hHHHHHHHHHHhcCCcEEEEcCCccchHHHHHHHhCCCEEEEcCCcch
Q 017242 85 GLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLR 132 (375)
Q Consensus 85 sL~~L~~~L~~~~g~~L~v~~g~~~~~l~~l~~~~~~~~V~~~~~p~~ 132 (375)
...+.-++| ++.|+++.+..|++......++++.+++.++.+..|..
T Consensus 461 ~~~~~i~~L-~~~Gi~v~~~TGd~~~~a~~ia~~lgi~~~~~~~~P~~ 507 (645)
T 3j08_A 461 SAKPAVQEL-KRMGIKVGMITGDNWRSAEAISRELNLDLVIAEVLPHQ 507 (645)
T ss_dssp THHHHHHHH-HHTTCEEEEECSSCHHHHHHHHHHHTCSEEECSCCTTC
T ss_pred HHHHHHHHH-HHCCCEEEEEeCCCHHHHHHHHHHcCCCEEEEeCCHHh
Confidence 344555667 88999999999999999999999999999999887763
No 57
>2l69_A Rossmann 2X3 fold protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=25.98 E-value=2e+02 Score=21.27 Aligned_cols=42 Identities=19% Similarity=0.284 Sum_probs=32.4
Q ss_pred HhHHHHHHHHHHhcCCcEEEEcCCc--cchHHHHHHHhCCCEEEE
Q 017242 84 RGLRLLQRNIEETFQILFFLFQGEA--EDNIPNFVRECGASLLVT 126 (375)
Q Consensus 84 esL~~L~~~L~~~~g~~L~v~~g~~--~~~l~~l~~~~~~~~V~~ 126 (375)
+.|+.++.-+ ++.|..+..++... .+.+.+|+++|+++-|+.
T Consensus 13 etlrkfkdii-kkngfkvrtvrspqelkdsieelvkkynativvv 56 (134)
T 2l69_A 13 ETLRKFKDII-KKNGFKVRTVRSPQELKDSIEELVKKYNATIVVV 56 (134)
T ss_dssp HHHHHHHHHH-HHTTCEEEEECSHHHHHHHHHHHTTCCCCEEEEE
T ss_pred HHHHHHHHHH-HhcCceEEEecCHHHHHHHHHHHHHHhCCeEEEE
Confidence 5678888888 88898887766332 366788999999998775
No 58
>3gi1_A LBP, laminin-binding protein of group A streptococci; zinc-binding receptor, metal-binding, helical backbone, alpha/beta domains; 2.45A {Streptococcus pyogenes} PDB: 3hjt_A
Probab=25.86 E-value=1.5e+02 Score=26.44 Aligned_cols=68 Identities=13% Similarity=0.062 Sum_probs=42.7
Q ss_pred HHHHHhHHHHHHHHHHhc-----CCcEEEEcCCccchHHHHHHHhCCCEEEE-c----CCcchHHHHHHHHHHHHc-CCC
Q 017242 80 GFMLRGLRLLQRNIEETF-----QILFFLFQGEAEDNIPNFVRECGASLLVT-D----FSPLREIRRCKDKICNRV-SDS 148 (375)
Q Consensus 80 ~Fl~esL~~L~~~L~~~~-----g~~L~v~~g~~~~~l~~l~~~~~~~~V~~-~----~~p~~~~~~rd~~v~~~l-~~~ 148 (375)
.=+.+.|.+|++++ ++. +-.+++.+ ..+.-|++.+|.+.+-. . .+|. .++..++.+.+ +.+
T Consensus 157 ~~~~~~L~~Ld~~~-~~~l~~~~~~~~v~~H----~af~Yf~~~yGl~~~~~~~~~~~~eps---~~~l~~l~~~ik~~~ 228 (286)
T 3gi1_A 157 KAFKKEAEQLTEEY-TQKFKKVRSKTFVTQH----TAFSYLAKRFGLKQLGISGISPEQEPS---PRQLKEIQDFVKEYN 228 (286)
T ss_dssp HHHHHHHHHHHHHH-HHHHTTCSCCEEEEEE----SCCHHHHHHTTCEEEEEECSCC---CC---HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHH-HHHHhcCCCCEEEEEC----CchHHHHHHCCCeEeeccccCCCCCCC---HHHHHHHHHHHHHcC
Confidence 33455677777666 443 34455444 57888999999997753 2 3454 24556677766 678
Q ss_pred ceEEEec
Q 017242 149 VTIHEVD 155 (375)
Q Consensus 149 i~~~~~~ 155 (375)
|++..++
T Consensus 229 v~~if~e 235 (286)
T 3gi1_A 229 VKTIFAE 235 (286)
T ss_dssp CCEEEEC
T ss_pred CCEEEEe
Confidence 8888776
No 59
>1k77_A EC1530, hypothetical protein YGBM; TIM barrel, structural genomics, PSI, structure initiative; 1.63A {Escherichia coli} SCOP: c.1.15.5
Probab=25.39 E-value=2.5e+02 Score=23.80 Aligned_cols=78 Identities=9% Similarity=-0.012 Sum_probs=49.8
Q ss_pred HHHHHHHHHhhCCCCEEEEEEcC-CCCcCcchhHHHHHHHhHHHHHHHHHHhcCCcEEEEcC----------CccchHHH
Q 017242 46 ALIHAVDQANKNNVPVAVAFNLF-DQFLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQG----------EAEDNIPN 114 (375)
Q Consensus 46 aL~~A~~~a~~~~~~vl~vfi~d-p~~~~~~~~r~~Fl~esL~~L~~~L~~~~g~~L~v~~g----------~~~~~l~~ 114 (375)
.+..+++.|.+.|.+.+.+..-. +.. ......+..+.++|+.+.+.. ++.|+.|.+-.- ...+.+.+
T Consensus 86 ~~~~~i~~a~~lG~~~v~~~~g~~~~~-~~~~~~~~~~~~~l~~l~~~a-~~~gv~l~~E~~~~~~~~~~~~~~~~~~~~ 163 (260)
T 1k77_A 86 DIDLALEYALALNCEQVHVMAGVVPAG-EDAERYRAVFIDNIRYAADRF-APHGKRILVEALSPGVKPHYLFSSQYQALA 163 (260)
T ss_dssp HHHHHHHHHHHTTCSEEECCCCBCCTT-SCHHHHHHHHHHHHHHHHHHH-GGGTCEEEECCCCTTTSTTBSCCSHHHHHH
T ss_pred HHHHHHHHHHHcCCCEEEECcCCCCCC-CCHHHHHHHHHHHHHHHHHHH-HHcCCEEEEEeCCccCCCcCccCCHHHHHH
Confidence 45666777777888876443211 111 123455677899999999999 999999877432 12345667
Q ss_pred HHHHhCCCEEE
Q 017242 115 FVRECGASLLV 125 (375)
Q Consensus 115 l~~~~~~~~V~ 125 (375)
+++..+-..|-
T Consensus 164 l~~~~~~~~~g 174 (260)
T 1k77_A 164 IVEEVARDNVF 174 (260)
T ss_dssp HHHHHCCTTEE
T ss_pred HHHHhCCCCEE
Confidence 77777654443
No 60
>1toa_A Tromp-1, protein (periplasmic binding protein TROA); zinc binding protein, ABC trans binding protein; 1.80A {Treponema pallidum} SCOP: c.92.2.2 PDB: 1k0f_A
Probab=25.39 E-value=1.5e+02 Score=26.91 Aligned_cols=66 Identities=9% Similarity=0.065 Sum_probs=41.9
Q ss_pred HHHhHHHHHHHHHHhc-------CCcEEEEcCCccchHHHHHHHhCCCEEEE-----cCCcchHHHHHHHHHHHHc-CCC
Q 017242 82 MLRGLRLLQRNIEETF-------QILFFLFQGEAEDNIPNFVRECGASLLVT-----DFSPLREIRRCKDKICNRV-SDS 148 (375)
Q Consensus 82 l~esL~~L~~~L~~~~-------g~~L~v~~g~~~~~l~~l~~~~~~~~V~~-----~~~p~~~~~~rd~~v~~~l-~~~ 148 (375)
+.+.|.+|++++ ++. +-.+++.+ ..+.-|++.+|...+.. +.+|.. ++..++.+.+ +.+
T Consensus 175 ~~~~L~~Ld~~~-~~~l~~~~~~~~~~v~~H----~af~Yfa~~yGl~~~~~~~~~~~~eps~---~~l~~l~~~ik~~~ 246 (313)
T 1toa_A 175 YQQQLDKLDAYV-RRKAQSLPAERRVLVTAH----DAFGYFSRAYGFEVKGLQGVSTASEASA---HDMQELAAFIAQRK 246 (313)
T ss_dssp HHHHHHHHHHHH-HHHHHTSCGGGCEEEEEE----SCCHHHHHHHTCEEEEEECSSCSSCCCH---HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHH-HHHHhhCCccCCEEEEEC----CcHHHHHHHCCCeEEEeeccCCCCCCCH---HHHHHHHHHHHHcC
Confidence 445566666655 332 33455544 57888999999987754 235542 4556677766 678
Q ss_pred ceEEEec
Q 017242 149 VTIHEVD 155 (375)
Q Consensus 149 i~~~~~~ 155 (375)
|++..++
T Consensus 247 v~~If~e 253 (313)
T 1toa_A 247 LPAIFIE 253 (313)
T ss_dssp CSEEEEE
T ss_pred CCEEEEe
Confidence 8887765
No 61
>2p9j_A Hypothetical protein AQ2171; secsg, riken, PSI, structural GENO protein structure initiative, southeast collaboratory for S genomics; 2.40A {Aquifex aeolicus}
Probab=25.18 E-value=1.2e+02 Score=23.78 Aligned_cols=43 Identities=12% Similarity=0.147 Sum_probs=33.8
Q ss_pred HHHHHHHHHhcCCcEEEEcCCccchHHHHHHHhCCCEEEEcCCc
Q 017242 87 RLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSP 130 (375)
Q Consensus 87 ~~L~~~L~~~~g~~L~v~~g~~~~~l~~l~~~~~~~~V~~~~~p 130 (375)
.++=+.| ++.|+++.++.+.+...+..+++..++...+....|
T Consensus 42 ~~~l~~l-~~~g~~~~i~T~~~~~~~~~~l~~~gl~~~~~~~kp 84 (162)
T 2p9j_A 42 GIGIKLL-QKMGITLAVISGRDSAPLITRLKELGVEEIYTGSYK 84 (162)
T ss_dssp HHHHHHH-HTTTCEEEEEESCCCHHHHHHHHHTTCCEEEECC--
T ss_pred HHHHHHH-HHCCCEEEEEeCCCcHHHHHHHHHcCCHhhccCCCC
Confidence 3555667 888999999999999999999999999877654333
No 62
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=24.82 E-value=3.2e+02 Score=23.20 Aligned_cols=71 Identities=13% Similarity=0.141 Sum_probs=44.1
Q ss_pred HHHHHhHHHHHHHHHHhcCCcEEEEcCCcc-c---hHHHHHHHhCCCEEEEcCCcchHHHHHHHHHHHHcCCCceEEEec
Q 017242 80 GFMLRGLRLLQRNIEETFQILFFLFQGEAE-D---NIPNFVRECGASLLVTDFSPLREIRRCKDKICNRVSDSVTIHEVD 155 (375)
Q Consensus 80 ~Fl~esL~~L~~~L~~~~g~~L~v~~g~~~-~---~l~~l~~~~~~~~V~~~~~p~~~~~~rd~~v~~~l~~~i~~~~~~ 155 (375)
.|..+-+..+.+.+ ++.|..+.+...+.. + .+.+.+...+++.|+...... +..+....+.||++..++
T Consensus 20 ~~~~~~~~gi~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~------~~~~~~l~~~~iPvV~i~ 92 (276)
T 3jy6_A 20 YFSTELFKGISSIL-ESRGYIGVLFDANADIEREKTLLRAIGSRGFDGLILQSFSN------PQTVQEILHQQMPVVSVD 92 (276)
T ss_dssp HHHHHHHHHHHHHH-HTTTCEEEEEECTTCHHHHHHHHHHHHTTTCSEEEEESSCC------HHHHHHHHTTSSCEEEES
T ss_pred hHHHHHHHHHHHHH-HHCCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEecCCc------HHHHHHHHHCCCCEEEEe
Confidence 37777788889999 999999888764321 1 122334456888888632111 122333225689999887
Q ss_pred CC
Q 017242 156 AH 157 (375)
Q Consensus 156 ~~ 157 (375)
..
T Consensus 93 ~~ 94 (276)
T 3jy6_A 93 RE 94 (276)
T ss_dssp CC
T ss_pred cc
Confidence 54
No 63
>3cx3_A Lipoprotein; zinc-binding, transport, lipid binding protein, metal binding protein; 2.40A {Streptococcus pneumoniae}
Probab=24.51 E-value=1.8e+02 Score=25.96 Aligned_cols=66 Identities=15% Similarity=0.156 Sum_probs=42.2
Q ss_pred HHHhHHHHHHHHHHhc-----CCcEEEEcCCccchHHHHHHHhCCCEEEE-----cCCcchHHHHHHHHHHHHc-CCCce
Q 017242 82 MLRGLRLLQRNIEETF-----QILFFLFQGEAEDNIPNFVRECGASLLVT-----DFSPLREIRRCKDKICNRV-SDSVT 150 (375)
Q Consensus 82 l~esL~~L~~~L~~~~-----g~~L~v~~g~~~~~l~~l~~~~~~~~V~~-----~~~p~~~~~~rd~~v~~~l-~~~i~ 150 (375)
+.+-|.+|++++ ++. +-.+++.+ ..+.-|++.+|...+.. +.+|.. ++..++.+.+ +.+|+
T Consensus 157 ~~~~L~~Ld~~~-~~~l~~~~~~~~v~~H----~af~Yf~~~yGl~~~~~~~~~~~~eps~---~~l~~l~~~ik~~~v~ 228 (284)
T 3cx3_A 157 FIKKAQELTKKF-QPKFEKATQKTFVTQH----TAFSYLAKRFGLNQLGIAGISPEQEPSP---RQLTEIQEFVKTYKVK 228 (284)
T ss_dssp HHHHHHHHHHHH-HHHHHSCSCCCEEEEE----SCCHHHHHHTTCCEEEEECSSTTCCCCS---HHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHH-HHHHhcCCCCEEEEEC----CchHHHHHHcCCEEeeccCCCCCCCCCH---HHHHHHHHHHHHcCCC
Confidence 445566666655 432 34555554 57888999999998764 235543 4456666666 67888
Q ss_pred EEEec
Q 017242 151 IHEVD 155 (375)
Q Consensus 151 ~~~~~ 155 (375)
+..++
T Consensus 229 ~if~e 233 (284)
T 3cx3_A 229 TIFTE 233 (284)
T ss_dssp CEEEC
T ss_pred EEEEe
Confidence 77765
No 64
>2prs_A High-affinity zinc uptake system protein ZNUA; protein consists of two (beta/ALFA)4 domains, metal transport; 1.70A {Escherichia coli} PDB: 2osv_A 2ps0_A 2ps3_A 2ps9_A 2ogw_A 2xy4_A* 2xqv_A* 2xh8_A
Probab=24.29 E-value=1.6e+02 Score=26.21 Aligned_cols=66 Identities=15% Similarity=0.193 Sum_probs=41.8
Q ss_pred HHHhHHHHHHHHHHhc-----CCcEEEEcCCccchHHHHHHHhCCCEEEE-----cCCcchHHHHHHHHHHHHc-CCCce
Q 017242 82 MLRGLRLLQRNIEETF-----QILFFLFQGEAEDNIPNFVRECGASLLVT-----DFSPLREIRRCKDKICNRV-SDSVT 150 (375)
Q Consensus 82 l~esL~~L~~~L~~~~-----g~~L~v~~g~~~~~l~~l~~~~~~~~V~~-----~~~p~~~~~~rd~~v~~~l-~~~i~ 150 (375)
+.+.|.+|++++ ++. +-.+++.+ ..+.-|++.+|...+.. +.+|.. ++..++.+.+ +.+|+
T Consensus 154 ~~~~L~~Ld~~~-~~~l~~~~~~~~v~~H----~af~Yf~~~yGl~~~~~~~~~~~~eps~---~~l~~l~~~ik~~~v~ 225 (284)
T 2prs_A 154 FEAQLASTETQV-GNELAPLKGKGYFVFH----DAYGYFEKQFGLTPLGHFTVNPEIQPGA---QRLHEIRTQLVEQKAT 225 (284)
T ss_dssp HHHHHHHHHHHH-HHHHGGGTTCCEEEEE----SCCHHHHHHHTCCCCEEEESSTTSCCCH---HHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHH-HHHHhcCCCCeEEEEC----ccHHHHHHHCCCeEeEeeccCCCCCCCH---HHHHHHHHHHHHcCCC
Confidence 445566666555 332 34455554 57888999999987654 245553 4556677766 67898
Q ss_pred EEEec
Q 017242 151 IHEVD 155 (375)
Q Consensus 151 ~~~~~ 155 (375)
+..++
T Consensus 226 ~if~e 230 (284)
T 2prs_A 226 CVFAE 230 (284)
T ss_dssp EEEEC
T ss_pred EEEEe
Confidence 88766
No 65
>1i60_A IOLI protein; beta barrel, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Bacillus subtilis} SCOP: c.1.15.4 PDB: 1i6n_A
Probab=23.73 E-value=3.4e+02 Score=23.05 Aligned_cols=74 Identities=14% Similarity=0.005 Sum_probs=36.3
Q ss_pred HHHHHHHHhhCCCCEEEEEEcCCCCcCcchhHHHHHHHhHHHHHHHHHHhcCCcEEEEcCC-------ccchHHHHHHHh
Q 017242 47 LIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGE-------AEDNIPNFVREC 119 (375)
Q Consensus 47 L~~A~~~a~~~~~~vl~vfi~dp~~~~~~~~r~~Fl~esL~~L~~~L~~~~g~~L~v~~g~-------~~~~l~~l~~~~ 119 (375)
+..+++.|...|.+.+.+..............+..+.++|+.+.+.. ++.|+.|.+-... ..+.+.++++..
T Consensus 86 ~~~~i~~a~~lG~~~v~~~~g~~~~~~~~~~~~~~~~~~l~~l~~~a-~~~gv~l~lEn~~~~~~~~~~~~~~~~l~~~~ 164 (278)
T 1i60_A 86 FKGMMETCKTLGVKYVVAVPLVTEQKIVKEEIKKSSVDVLTELSDIA-EPYGVKIALEFVGHPQCTVNTFEQAYEIVNTV 164 (278)
T ss_dssp HHHHHHHHHHHTCCEEEEECCBCSSCCCHHHHHHHHHHHHHHHHHHH-GGGTCEEEEECCCCTTBSSCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCEEEEecCCCCCCCCHHHHHHHHHHHHHHHHHHH-HhcCCEEEEEecCCccchhcCHHHHHHHHHHh
Confidence 33444455555666554432110000011334455667777777777 7777776654311 223455556655
Q ss_pred CC
Q 017242 120 GA 121 (375)
Q Consensus 120 ~~ 121 (375)
+-
T Consensus 165 ~~ 166 (278)
T 1i60_A 165 NR 166 (278)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 66
>2pwj_A Mitochondrial peroxiredoxin; alpha and beta protein, oxidoreductase; 2.80A {Pisum sativum}
Probab=23.64 E-value=2.4e+02 Score=22.53 Aligned_cols=44 Identities=5% Similarity=-0.032 Sum_probs=33.9
Q ss_pred HHhHHHHHHHHHHhcCCc-EEEEcCCccchHHHHHHHhCCC---EEEEc
Q 017242 83 LRGLRLLQRNIEETFQIL-FFLFQGEAEDNIPNFVRECGAS---LLVTD 127 (375)
Q Consensus 83 ~esL~~L~~~L~~~~g~~-L~v~~g~~~~~l~~l~~~~~~~---~V~~~ 127 (375)
+..|.++.+++ ++.|+. ++.+.-+..+...+++++++++ .++.|
T Consensus 64 ~p~l~~~~~~~-~~~g~~~vv~Is~d~~~~~~~~~~~~~~~~~fp~l~D 111 (171)
T 2pwj_A 64 VPPYKHNIDKF-KAKGVDSVICVAINDPYTVNAWAEKIQAKDAIEFYGD 111 (171)
T ss_dssp HHHHHHTHHHH-HHTTCSEEEEEESSCHHHHHHHHHHTTCTTTSEEEEC
T ss_pred HHHHHHHHHHH-HHCCCCEEEEEeCCCHHHHHHHHHHhCCCCceEEEEC
Confidence 35678888899 999999 8888766667788899998862 45555
No 67
>4gxt_A A conserved functionally unknown protein; structural genomics, PSI-biology; 1.82A {Anaerococcus prevotii}
Probab=23.59 E-value=35 Score=32.34 Aligned_cols=39 Identities=18% Similarity=0.218 Sum_probs=35.0
Q ss_pred HHHhHHHHHHHHHHhcCCcEEEEcCCccchHHHHHHHhCC
Q 017242 82 MLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGA 121 (375)
Q Consensus 82 l~esL~~L~~~L~~~~g~~L~v~~g~~~~~l~~l~~~~~~ 121 (375)
+...+.+|-+.| ++.|++.+|+.|...+.+..++++.++
T Consensus 222 ~~p~~~eLi~~L-~~~G~~v~IVSgg~~~~v~~ia~~lg~ 260 (385)
T 4gxt_A 222 TLDEMVDLYRSL-EENGIDCYIVSASFIDIVRAFATDTNN 260 (385)
T ss_dssp ECHHHHHHHHHH-HHTTCEEEEEEEEEHHHHHHHHHCTTS
T ss_pred eCHHHHHHHHHH-HHCCCeEEEEcCCcHHHHHHHHHHhCc
Confidence 457899999999 999999999999999999999998654
No 68
>2pr7_A Haloacid dehalogenase/epoxide hydrolase family; NP_599989.1, uncharacterized protein, structural genomics; 1.44A {Corynebacterium glutamicum atcc 13032}
Probab=23.56 E-value=70 Score=23.96 Aligned_cols=39 Identities=13% Similarity=-0.030 Sum_probs=29.5
Q ss_pred HHHHhHHHHHHHHHHhcCCcEEEEcCCccchHHHHHHHhC
Q 017242 81 FMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECG 120 (375)
Q Consensus 81 Fl~esL~~L~~~L~~~~g~~L~v~~g~~~~~l~~l~~~~~ 120 (375)
-+..++.++-+.| ++.|+++.++.+.+...+..+++..+
T Consensus 18 ~~~~~~~~~l~~L-~~~G~~~~i~S~~~~~~~~~~l~~~~ 56 (137)
T 2pr7_A 18 EDQRRWRNLLAAA-KKNGVGTVILSNDPGGLGAAPIRELE 56 (137)
T ss_dssp HHHHHHHHHHHHH-HHTTCEEEEEECSCCGGGGHHHHHHH
T ss_pred ccCccHHHHHHHH-HHCCCEEEEEeCCCHHHHHHHHHHCC
Confidence 3567788888889 99999999998877666555555543
No 69
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=23.24 E-value=2.8e+02 Score=23.98 Aligned_cols=88 Identities=7% Similarity=0.032 Sum_probs=53.3
Q ss_pred CCEEEEEEcCCCCcCcchhHHHHHHHhHHHHHHHHHHhcCCcEEEEcCC---ccchHHHHHHHhCCCEEEEcC-CcchHH
Q 017242 59 VPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGE---AEDNIPNFVRECGASLLVTDF-SPLREI 134 (375)
Q Consensus 59 ~~vl~vfi~dp~~~~~~~~r~~Fl~esL~~L~~~L~~~~g~~L~v~~g~---~~~~l~~l~~~~~~~~V~~~~-~p~~~~ 134 (375)
...|.+.+-++. ....-.|..+-+..+.+.+ ++.|..+.+...+ ....+.+++...+++.|+... ....
T Consensus 6 s~~Igvi~~~~~----~~~~~~~~~~~~~gi~~~a-~~~g~~~~~~~~~~~~~~~~~~~~l~~~~vdGiIi~~~~~~~-- 78 (294)
T 3qk7_A 6 TDAIALAYPSRP----RVLNNSTFLEMISWIGIEL-GKRGLDLLLIPDEPGEKYQSLIHLVETRRVDALIVAHTQPED-- 78 (294)
T ss_dssp CCEEEEEEESCS----GGGSCHHHHHHHHHHHHHH-HHTTCEEEEEEECTTCCCHHHHHHHHHTCCSEEEECSCCSSC--
T ss_pred cceEEEEecCCC----ccccChhHHHHHHHHHHHH-HHCCCEEEEEeCCChhhHHHHHHHHHcCCCCEEEEeCCCCCh--
Confidence 356666664221 0112247778888899999 9999998887533 223455666677899988732 2211
Q ss_pred HHHHHHHHHHcCCCceEEEecCC
Q 017242 135 RRCKDKICNRVSDSVTIHEVDAH 157 (375)
Q Consensus 135 ~~rd~~v~~~l~~~i~~~~~~~~ 157 (375)
..+....+.||++..++..
T Consensus 79 ----~~~~~l~~~~iPvV~~~~~ 97 (294)
T 3qk7_A 79 ----FRLQYLQKQNFPFLALGRS 97 (294)
T ss_dssp ----HHHHHHHHTTCCEEEESCC
T ss_pred ----HHHHHHHhCCCCEEEECCC
Confidence 1222222458999988764
No 70
>2o1e_A YCDH; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.60A {Bacillus subtilis}
Probab=23.12 E-value=1.9e+02 Score=26.26 Aligned_cols=67 Identities=15% Similarity=0.132 Sum_probs=42.3
Q ss_pred HHHHhHHHHHHHHHHhc-----CCcEEEEcCCccchHHHHHHHhCCCEEEE-----cCCcchHHHHHHHHHHHHc-CCCc
Q 017242 81 FMLRGLRLLQRNIEETF-----QILFFLFQGEAEDNIPNFVRECGASLLVT-----DFSPLREIRRCKDKICNRV-SDSV 149 (375)
Q Consensus 81 Fl~esL~~L~~~L~~~~-----g~~L~v~~g~~~~~l~~l~~~~~~~~V~~-----~~~p~~~~~~rd~~v~~~l-~~~i 149 (375)
=+.+-|.+|++++ ++. +-.+++.+ +.+.-|++.+|...+.. +.+|. .++..++.+.+ +.+|
T Consensus 169 ~~~~~L~~Ld~~~-~~~l~~~~~~~~v~~H----~af~Yfa~~yGl~~~~~~~~~~~~eps---~~~l~~l~~~ik~~~v 240 (312)
T 2o1e_A 169 EYIAKLQDLDKLY-RTTAKKAEKKEFITQH----TAFGYLAKEYGLKQVPIAGLSPDQEPS---AASLAKLKTYAKEHNV 240 (312)
T ss_dssp HHHHHHHHHHHHH-HHHHHSCSCCEEEESS----CTTHHHHHHTTCEEEECSSCCSSSCCC---HHHHHHHHHHTTSSCC
T ss_pred HHHHHHHHHHHHH-HHHhhccCCCEEEEEC----CchHHHHHHCCCeEEEeeccCCCCCCC---HHHHHHHHHHHHHcCC
Confidence 3445566666655 332 23344332 47889999999997764 23554 35566777777 6789
Q ss_pred eEEEec
Q 017242 150 TIHEVD 155 (375)
Q Consensus 150 ~~~~~~ 155 (375)
++..++
T Consensus 241 ~~If~e 246 (312)
T 2o1e_A 241 KVIYFE 246 (312)
T ss_dssp CEEECS
T ss_pred CEEEEe
Confidence 887765
No 71
>3gkn_A Bacterioferritin comigratory protein; BCP, PRX, atypical 2-Cys, oxidoreduc; HET: BIH; 1.47A {Xanthomonas campestris PV} PDB: 3gkk_A 3gkm_A
Probab=22.94 E-value=1.1e+02 Score=23.87 Aligned_cols=43 Identities=9% Similarity=0.055 Sum_probs=36.0
Q ss_pred HHHhHHHHHHHHHHhcCCcEEEEcCCccchHHHHHHHhCCCEEE
Q 017242 82 MLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLV 125 (375)
Q Consensus 82 l~esL~~L~~~L~~~~g~~L~v~~g~~~~~l~~l~~~~~~~~V~ 125 (375)
.+..|.++.+++ ++.|+.++.+.-+..+.+.++++++++.-.+
T Consensus 54 ~~~~l~~~~~~~-~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~ 96 (163)
T 3gkn_A 54 EGLDFNALLPEF-DKAGAKILGVSRDSVKSHDNFCAKQGFAFPL 96 (163)
T ss_dssp HHHHHHHHHHHH-HHTTCEEEEEESSCHHHHHHHHHHHCCSSCE
T ss_pred HHHHHHHHHHHH-HHCCCEEEEEeCCCHHHHHHHHHHhCCCceE
Confidence 467899999999 9999999888888888899999998876433
No 72
>1pq4_A Periplasmic binding protein component of AN ABC T uptake transporter; ZNUA, loop, metal-binding, metal binding protein; 1.90A {Synechocystis SP} SCOP: c.92.2.2 PDB: 2ov3_A 2ov1_A
Probab=22.91 E-value=1.6e+02 Score=26.38 Aligned_cols=66 Identities=15% Similarity=0.251 Sum_probs=41.0
Q ss_pred HHHhHHHHHHHHHHhc-----CCcEEEEcCCccchHHHHHHHhCCCEEEE---cCCcchHHHHHHHHHHHHc-CCCceEE
Q 017242 82 MLRGLRLLQRNIEETF-----QILFFLFQGEAEDNIPNFVRECGASLLVT---DFSPLREIRRCKDKICNRV-SDSVTIH 152 (375)
Q Consensus 82 l~esL~~L~~~L~~~~-----g~~L~v~~g~~~~~l~~l~~~~~~~~V~~---~~~p~~~~~~rd~~v~~~l-~~~i~~~ 152 (375)
+.+-|.+|++++ ++. +-.+++.+ ..+.-|++.+|...+.. ..+|.. ++..++.+.+ +.+|++.
T Consensus 170 ~~~~L~~Ld~~~-~~~l~~~~~~~~v~~H----~af~Yf~~~yGl~~~~~~~~~~eps~---~~l~~l~~~ik~~~v~~I 241 (291)
T 1pq4_A 170 FLAELERLNQEL-GQILQPLPQRKFIVFH----PSWAYFARDYNLVQIPIEVEGQEPSA---QELKQLIDTAKENNLTMV 241 (291)
T ss_dssp HHHHHHHHHHHH-HHHHTTCSCCEEEESS----CCCHHHHHHTTCEEEESCBTTBCCCH---HHHHHHHHHHHTTTCCEE
T ss_pred HHHHHHHHHHHH-HHHHhCCCCCEEEEEC----CchHHHHHHCCCEEeecccCCCCCCH---HHHHHHHHHHHHcCCCEE
Confidence 445566666655 432 23343332 46888999999987764 235542 4556777777 6788887
Q ss_pred Eec
Q 017242 153 EVD 155 (375)
Q Consensus 153 ~~~ 155 (375)
.+.
T Consensus 242 f~e 244 (291)
T 1pq4_A 242 FGE 244 (291)
T ss_dssp EEE
T ss_pred EEe
Confidence 764
No 73
>1xvl_A Mn transporter, MNTC protein; manganese, ABC-type transport systems, photosynthesis, cyanobacteria, disulfide bond, metal transport; 2.90A {Synechocystis SP} SCOP: c.92.2.2
Probab=22.80 E-value=2.5e+02 Score=25.58 Aligned_cols=66 Identities=11% Similarity=0.158 Sum_probs=42.6
Q ss_pred HHHhHHHHHHHHHHhc-------CCcEEEEcCCccchHHHHHHHhCCCEEEE-----cCCcchHHHHHHHHHHHHc-CCC
Q 017242 82 MLRGLRLLQRNIEETF-------QILFFLFQGEAEDNIPNFVRECGASLLVT-----DFSPLREIRRCKDKICNRV-SDS 148 (375)
Q Consensus 82 l~esL~~L~~~L~~~~-------g~~L~v~~g~~~~~l~~l~~~~~~~~V~~-----~~~p~~~~~~rd~~v~~~l-~~~ 148 (375)
+.+-|.+|++++ ++. +-.+++.+ +.+.-|++.+|...+.. +.+|.. .+..++.+.+ +.+
T Consensus 182 ~~~~L~~Ld~~~-~~~l~~~~~~~r~~v~~H----~af~Yfa~~yGL~~~~~~~~~~~~eps~---~~l~~l~~~ik~~~ 253 (321)
T 1xvl_A 182 YSEQLKAIDRQL-GADLEQVPANQRFLVSCE----GAFSYLARDYGMEEIYMWPINAEQQFTP---KQVQTVIEEVKTNN 253 (321)
T ss_dssp HHHHHHHHHHHH-HHHHTTSCGGGCEEEEEE----STTHHHHHHTTCEEEEEESSSSSCSCCH---HHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHH-HHHHhhCcccCCEEEEEC----chHHHHHHHCCCeEEEeeccCCCCCCCH---HHHHHHHHHHHHcC
Confidence 445566666665 432 23455544 57888999999997764 235542 4556777777 678
Q ss_pred ceEEEec
Q 017242 149 VTIHEVD 155 (375)
Q Consensus 149 i~~~~~~ 155 (375)
|++..++
T Consensus 254 v~~If~e 260 (321)
T 1xvl_A 254 VPTIFCE 260 (321)
T ss_dssp CSEEEEE
T ss_pred CcEEEEe
Confidence 9888765
No 74
>1k1e_A Deoxy-D-mannose-octulosonate 8-phosphate phosphat; structural genomics, KDO 8-P phosphatase, structure function project, S2F; HET: MES; 1.67A {Haemophilus influenzae RD} SCOP: c.108.1.5 PDB: 1j8d_A*
Probab=22.64 E-value=1.1e+02 Score=24.64 Aligned_cols=42 Identities=12% Similarity=0.104 Sum_probs=34.3
Q ss_pred HHHHHHHHhcCCcEEEEcCCccchHHHHHHHhCCCEEEEcCCc
Q 017242 88 LLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSP 130 (375)
Q Consensus 88 ~L~~~L~~~~g~~L~v~~g~~~~~l~~l~~~~~~~~V~~~~~p 130 (375)
++=+.| ++.|+++.++.|.+...+..+++..++..++....|
T Consensus 42 ~~l~~L-~~~G~~~~i~Tg~~~~~~~~~~~~lgl~~~~~~~k~ 83 (180)
T 1k1e_A 42 LGIKML-MDADIQVAVLSGRDSPILRRRIADLGIKLFFLGKLE 83 (180)
T ss_dssp HHHHHH-HHTTCEEEEEESCCCHHHHHHHHHHTCCEEEESCSC
T ss_pred HHHHHH-HHCCCeEEEEeCCCcHHHHHHHHHcCCceeecCCCC
Confidence 455567 888999999999999999999999999987754333
No 75
>3l23_A Sugar phosphate isomerase/epimerase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.70A {Parabacteroides distasonis}
Probab=22.23 E-value=4e+02 Score=23.41 Aligned_cols=54 Identities=7% Similarity=-0.073 Sum_probs=39.6
Q ss_pred HHHHHHHHhhCCCCEEEEEEcCCCCcCcchhHHHHHHHhHHHHHHHHHHhcCCc--EEEE
Q 017242 47 LIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQRNIEETFQIL--FFLF 104 (375)
Q Consensus 47 L~~A~~~a~~~~~~vl~vfi~dp~~~~~~~~r~~Fl~esL~~L~~~L~~~~g~~--L~v~ 104 (375)
+..+++.|...|.+.+.+... +. ......+..+.++|+.+.+.. ++.|+. |.+-
T Consensus 110 ~~~~i~~A~~lG~~~v~~~~~-~~--~~~~~~~~~~~~~l~~l~~~a-~~~Gv~~~l~~E 165 (303)
T 3l23_A 110 WKATAADHAKLGCKYLIQPMM-PT--ITTHDEAKLVCDIFNQASDVI-KAEGIATGFGYH 165 (303)
T ss_dssp HHHHHHHHHHTTCSEEEECSC-CC--CCSHHHHHHHHHHHHHHHHHH-HHTTCTTCEEEE
T ss_pred HHHHHHHHHHcCCCEEEECCC-CC--CCCHHHHHHHHHHHHHHHHHH-HHCCCcceEEEc
Confidence 566677778889888766322 21 123455678899999999999 999999 8764
No 76
>3j09_A COPA, copper-exporting P-type ATPase A; copper transporter, adenosine triphosph archaeal proteins, cation transport proteins; 10.00A {Archaeoglobus fulgidus}
Probab=21.84 E-value=90 Score=32.15 Aligned_cols=46 Identities=13% Similarity=0.230 Sum_probs=39.3
Q ss_pred HHHHHHHHHHhcCCcEEEEcCCccchHHHHHHHhCCCEEEEcCCcch
Q 017242 86 LRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLR 132 (375)
Q Consensus 86 L~~L~~~L~~~~g~~L~v~~g~~~~~l~~l~~~~~~~~V~~~~~p~~ 132 (375)
..+.-+.| ++.|+++.+..|+.......++++.+++.++.+..|..
T Consensus 540 ~~~~i~~l-~~~Gi~v~~~TGd~~~~a~~ia~~lgi~~~~~~~~P~~ 585 (723)
T 3j09_A 540 AKPAVQEL-KRMGIKVGMITGDNWRSAEAISRELNLDLVIAEVLPHQ 585 (723)
T ss_dssp HHHHHHHH-HHTTCEEEEECSSCHHHHHHHHHHHTCSEEECSCCTTC
T ss_pred HHHHHHHH-HHCCCEEEEECCCCHHHHHHHHHHcCCcEEEccCCHHH
Confidence 34445667 88999999999999999999999999999999887763
No 77
>4fe7_A Xylose operon regulatory protein; HTH_ARAC, helix-turn-helix, PBP, periplasmic binding protein binding transcription regulator, DNA xylose; HET: XYS; 2.90A {Escherichia coli} PDB: 4fe4_A
Probab=21.38 E-value=2.1e+02 Score=26.59 Aligned_cols=69 Identities=13% Similarity=0.097 Sum_probs=41.6
Q ss_pred HHHHHhHHHHHHHHHHhcCCcEEEEcCCccchHHHHHHHhCCCEEEEcCCcchHHHHHHHHHHHHc-CCCceEEEecCC
Q 017242 80 GFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICNRV-SDSVTIHEVDAH 157 (375)
Q Consensus 80 ~Fl~esL~~L~~~L~~~~g~~L~v~~g~~~~~l~~l~~~~~~~~V~~~~~p~~~~~~rd~~v~~~l-~~~i~~~~~~~~ 157 (375)
.|..+-+..+.+.+ ++.|..+.+...+......+.+...+++.|+... .. ..+.+.+ +.||++..++..
T Consensus 37 ~f~~~l~~gi~~~a-~~~g~~~~i~~~~~~~~~i~~l~~~~vDGiIi~~--~~------~~~~~~l~~~~iPvV~i~~~ 106 (412)
T 4fe7_A 37 AYDRQVVEGVGEYL-QASQSEWDIFIEEDFRARIDKIKDWLGDGVIADF--DD------KQIEQALADVDVPIVGVGGS 106 (412)
T ss_dssp HHHHHHHHHHHHHH-HHHTCCEEEEECC-CC--------CCCSEEEEET--TC------HHHHHHHTTCCSCEEEEEEC
T ss_pred hhhHHHHHHHHHHH-HhcCCCeEEEecCCccchhhhHhcCCCCEEEEec--CC------hHHHHHHhhCCCCEEEecCC
Confidence 36667788888889 9999998887655444444455667899988731 11 1223334 668999988753
No 78
>2r8e_A 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; YRBI, divalent metal, HAD superfamily, KDO 8-P, hydrolase; 1.40A {Escherichia coli O6} PDB: 2r8x_A 2r8y_A 2r8z_A 3hyc_A 3i6b_A*
Probab=21.34 E-value=99 Score=25.29 Aligned_cols=42 Identities=17% Similarity=0.041 Sum_probs=34.5
Q ss_pred HHHHHHHhcCCcEEEEcCCccchHHHHHHHhCCCEEEEcCCcc
Q 017242 89 LQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPL 131 (375)
Q Consensus 89 L~~~L~~~~g~~L~v~~g~~~~~l~~l~~~~~~~~V~~~~~p~ 131 (375)
+-+.| ++.|+++.++.|.+...+..+++..++..++....|-
T Consensus 61 ~l~~L-~~~g~~v~ivT~~~~~~~~~~l~~lgl~~~~~~~kpk 102 (188)
T 2r8e_A 61 GIRCA-LTSDIEVAIITGRKAKLVEDRCATLGITHLYQGQSNK 102 (188)
T ss_dssp HHHHH-HTTTCEEEEECSSCCHHHHHHHHHHTCCEEECSCSCS
T ss_pred HHHHH-HHCCCeEEEEeCCChHHHHHHHHHcCCceeecCCCCC
Confidence 45667 8889999999999989999999999999887654443
No 79
>3nkl_A UDP-D-quinovosamine 4-dehydrogenase; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; HET: MSE GOL; 1.90A {Vibrio fischeri}
Probab=21.28 E-value=1.8e+02 Score=22.27 Aligned_cols=46 Identities=9% Similarity=0.114 Sum_probs=30.7
Q ss_pred cchHHHHHHHhCCCEEEEcCCcchHHHHHHHHHHHHc-CCCceEEEecC
Q 017242 109 EDNIPNFVRECGASLLVTDFSPLREIRRCKDKICNRV-SDSVTIHEVDA 156 (375)
Q Consensus 109 ~~~l~~l~~~~~~~~V~~~~~p~~~~~~rd~~v~~~l-~~~i~~~~~~~ 156 (375)
.+.+.+++++++++.|+....... ....+++.+.| +.|+++..+.+
T Consensus 54 ~~~l~~~~~~~~id~viia~~~~~--~~~~~~i~~~l~~~gv~v~~vP~ 100 (141)
T 3nkl_A 54 PKYLERLIKKHCISTVLLAVPSAS--QVQKKVIIESLAKLHVEVLTIPN 100 (141)
T ss_dssp GGGHHHHHHHHTCCEEEECCTTSC--HHHHHHHHHHHHTTTCEEEECCC
T ss_pred HHHHHHHHHHCCCCEEEEeCCCCC--HHHHHHHHHHHHHcCCeEEECCC
Confidence 456889999999999987532221 12334566666 77999887653
No 80
>3uhf_A Glutamate racemase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta sandwich fold, isomerase; HET: DGL; 1.83A {Campylobacter jejuni} PDB: 3uho_A* 3uhp_A
Probab=21.28 E-value=1.4e+02 Score=26.65 Aligned_cols=61 Identities=7% Similarity=0.018 Sum_probs=48.4
Q ss_pred EEEEcCCCCcCcchhHHHHHHHhHHHHHHHHHHhcCCcEEEEcCCccc--hHHHHHHHhCCCEE
Q 017242 63 VAFNLFDQFLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAED--NIPNFVRECGASLL 124 (375)
Q Consensus 63 ~vfi~dp~~~~~~~~r~~Fl~esL~~L~~~L~~~~g~~L~v~~g~~~~--~l~~l~~~~~~~~V 124 (375)
.+|+.|......|.+....+.+-+.+.-+.| .+.|.+++|+-.+... .+.+|-+.+++--|
T Consensus 52 ~iy~~D~a~~PYG~ks~e~i~~~~~~~~~~L-~~~g~d~IVIACNTa~~~al~~lr~~~~iPvi 114 (274)
T 3uhf_A 52 IIYYGDTARVPYGVKDKDTIIKFCLEALDFF-EQFQIDMLIIACNTASAYALDALRAKAHFPVY 114 (274)
T ss_dssp EEEEECTTTCCCTTSCHHHHHHHHHHHHHHH-TTSCCSEEEECCHHHHHHSHHHHHHHCSSCEE
T ss_pred EEEEecCCCCCCCCCCHHHHHHHHHHHHHHH-HHCCCCEEEEeCCChhHHHHHHHHHhcCCCEE
Confidence 4788887766778888888888888888999 9999999999888765 36777777766543
No 81
>3kws_A Putative sugar isomerase; structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 1.68A {Parabacteroides distasonis atcc 8503}
Probab=20.85 E-value=4e+02 Score=22.93 Aligned_cols=79 Identities=6% Similarity=0.032 Sum_probs=49.8
Q ss_pred HHHHHHHHHhhCCCCEEEEEEcCCCC---cCcchhHHHHHHHhHHHHHHHHHHhcCCcEEEEcCC--------ccchHHH
Q 017242 46 ALIHAVDQANKNNVPVAVAFNLFDQF---LGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGE--------AEDNIPN 114 (375)
Q Consensus 46 aL~~A~~~a~~~~~~vl~vfi~dp~~---~~~~~~r~~Fl~esL~~L~~~L~~~~g~~L~v~~g~--------~~~~l~~ 114 (375)
.+..+++.|...|.+.+.+..-.... .......+..+.++|+.+.+.. ++.|+.|.+-.-+ ..+.+.+
T Consensus 105 ~~~~~i~~a~~lGa~~v~~~~g~~~~~~~~p~~~~~~~~~~~~l~~l~~~a-~~~Gv~l~lE~~~~~~~~~~~~~~~~~~ 183 (287)
T 3kws_A 105 TMKEIIAAAGELGSTGVIIVPAFNGQVPALPHTMETRDFLCEQFNEMGTFA-AQHGTSVIFEPLNRKECFYLRQVADAAS 183 (287)
T ss_dssp HHHHHHHHHHHTTCSEEEECSCCTTCCSBCCSSHHHHHHHHHHHHHHHHHH-HHTTCCEEECCCCTTTCSSCCCHHHHHH
T ss_pred HHHHHHHHHHHcCCCEEEEecCcCCcCCCCCCHHHHHHHHHHHHHHHHHHH-HHcCCEEEEEecCcccCcccCCHHHHHH
Confidence 34556667777888876553211111 1134455677889999999999 9999998876321 2345567
Q ss_pred HHHHhCCCEEE
Q 017242 115 FVRECGASLLV 125 (375)
Q Consensus 115 l~~~~~~~~V~ 125 (375)
+++..+-..|-
T Consensus 184 ll~~v~~~~vg 194 (287)
T 3kws_A 184 LCRDINNPGVR 194 (287)
T ss_dssp HHHHHCCTTEE
T ss_pred HHHHcCCCCee
Confidence 77777654443
No 82
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=20.55 E-value=3.3e+02 Score=23.31 Aligned_cols=84 Identities=10% Similarity=-0.120 Sum_probs=51.1
Q ss_pred CCEEEEEEcCCCCcCcchhHHHHHHHhHHHHHHHHHHhcCCcEEEEcCCc-cch---HHHHHHHhCCCEEEEcCCcchHH
Q 017242 59 VPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEA-EDN---IPNFVRECGASLLVTDFSPLREI 134 (375)
Q Consensus 59 ~~vl~vfi~dp~~~~~~~~r~~Fl~esL~~L~~~L~~~~g~~L~v~~g~~-~~~---l~~l~~~~~~~~V~~~~~p~~~~ 134 (375)
...|.+.+-+.. -.|..+-+..+++.+ ++.|..+.+...+. .+. +.+.+...+++.|+.......
T Consensus 8 ~~~Igvv~~~~~--------~~~~~~~~~gi~~~a-~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~-- 76 (291)
T 3egc_A 8 SNVVGLIVSDIE--------NVFFAEVASGVESEA-RHKGYSVLLANTAEDIVREREAVGQFFERRVDGLILAPSEGE-- 76 (291)
T ss_dssp CCEEEEEESCTT--------SHHHHHHHHHHHHHH-HHTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCCSSC--
T ss_pred CcEEEEEECCCc--------chHHHHHHHHHHHHH-HHCCCEEEEEeCCCCHHHHHHHHHHHHHCCCCEEEEeCCCCC--
Confidence 356666663321 147777788889999 99999998876332 121 223344568998887322111
Q ss_pred HHHHHHHHHHc-CCCceEEEecCC
Q 017242 135 RRCKDKICNRV-SDSVTIHEVDAH 157 (375)
Q Consensus 135 ~~rd~~v~~~l-~~~i~~~~~~~~ 157 (375)
..+.+.+ +.||++..++..
T Consensus 77 ----~~~~~~~~~~~iPvV~~~~~ 96 (291)
T 3egc_A 77 ----HDYLRTELPKTFPIVAVNRE 96 (291)
T ss_dssp ----CHHHHHSSCTTSCEEEESSC
T ss_pred ----hHHHHHhhccCCCEEEEecc
Confidence 1222334 679999988764
No 83
>1a76_A Flap endonuclease-1 protein; 5'-3' EXO/endo nuclease, DNA replication, RTH, RAD27, DNA repair; 2.00A {Methanocaldococcus jannaschii} SCOP: a.60.7.1 c.120.1.2 PDB: 1a77_A
Probab=20.49 E-value=90 Score=28.63 Aligned_cols=41 Identities=10% Similarity=0.063 Sum_probs=33.5
Q ss_pred hHHHHHHHHHHhcCCcEEEEcCCccchHHHHHHHhCCCEEEE
Q 017242 85 GLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVT 126 (375)
Q Consensus 85 sL~~L~~~L~~~~g~~L~v~~g~~~~~l~~l~~~~~~~~V~~ 126 (375)
.+..+++-| +.+|++.++..|+..+.+..|++.-.+..|++
T Consensus 131 ~~~~~~~lL-~~~gi~~i~apgEAD~~ia~La~~g~~~~I~S 171 (326)
T 1a76_A 131 MVENCKYLL-SLMGIPYVEAPSEGEAQASYMAKKGDVWAVVS 171 (326)
T ss_dssp HHHHHHHHH-HHHTCCEEECSSCHHHHHHHHHHTTSSSEEEC
T ss_pred HHHHHHHHH-HHcCCCeEECCccHHHHHHHHHHCCCEEEEec
Confidence 456778888 88999999999988888999988755666766
No 84
>3out_A Glutamate racemase; structural genomics, center for structural genomics of infec diseases, csgid, MURI, cell envelope; HET: MSE DGL; 1.65A {Francisella tularensis subsp}
Probab=20.46 E-value=1.8e+02 Score=25.78 Aligned_cols=61 Identities=0% Similarity=-0.138 Sum_probs=48.4
Q ss_pred EEEEcCCCCcCcchhHHHHHHHhHHHHHHHHHHhcCCcEEEEcCCccc--hHHHHHHHh-CCCEE
Q 017242 63 VAFNLFDQFLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAED--NIPNFVREC-GASLL 124 (375)
Q Consensus 63 ~vfi~dp~~~~~~~~r~~Fl~esL~~L~~~L~~~~g~~L~v~~g~~~~--~l~~l~~~~-~~~~V 124 (375)
.+|+.|......|.+....+.+-+.+.-+.| .+.|.+++|+-.+... .+.++-+.+ ++--|
T Consensus 35 ~iy~~D~a~~PYG~~~~~~i~~~~~~~~~~L-~~~g~~~iVIACNTa~~~al~~lr~~~~~iPvi 98 (268)
T 3out_A 35 IIYFGDIARIPYGTKSRATIQKFAAQTAKFL-IDQEVKAIIIACNTISAIAKDIVQEIAKAIPVI 98 (268)
T ss_dssp EEEEECTTTCCCTTSCHHHHHHHHHHHHHHH-HHTTCSEEEECCHHHHHHHHHHHHHHHTTSCEE
T ss_pred EEEecCCCCCCCCCCCHHHHHHHHHHHHHHH-HHCCCCEEEEeCCChHHHHHHHHHHhcCCCCEE
Confidence 4788888766778888888888888899999 8899999999888765 457777777 66544
Done!