Query 017243
Match_columns 375
No_of_seqs 197 out of 1815
Neff 8.4
Searched_HMMs 46136
Date Fri Mar 29 06:51:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017243.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017243hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0136 Acyl-CoA oxidase [Lipi 100.0 2.8E-79 6.1E-84 598.1 30.3 365 1-374 239-608 (670)
2 KOG0135 Pristanoyl-CoA/acyl-Co 100.0 1E-76 2.2E-81 568.1 30.1 367 1-374 252-627 (661)
3 PLN02443 acyl-coenzyme A oxida 100.0 3.4E-73 7.3E-78 584.4 38.7 374 1-374 227-600 (664)
4 PLN02636 acyl-coenzyme A oxida 100.0 6.1E-73 1.3E-77 585.1 36.8 365 1-374 275-652 (686)
5 PLN02312 acyl-CoA oxidase 100.0 3.3E-71 7.1E-76 571.0 35.0 359 1-374 280-648 (680)
6 PTZ00460 acyl-CoA dehydrogenas 100.0 4.2E-70 9E-75 560.6 36.8 358 1-374 223-586 (646)
7 cd01150 AXO Peroxisomal acyl-C 100.0 1.7E-68 3.7E-73 548.8 36.2 338 1-374 230-575 (610)
8 KOG0140 Medium-chain acyl-CoA 100.0 3.7E-34 8.1E-39 258.1 9.7 182 2-217 226-407 (408)
9 KOG0139 Short-chain acyl-CoA d 100.0 4E-33 8.6E-38 255.4 9.8 168 1-202 231-398 (398)
10 KOG0141 Isovaleryl-CoA dehydro 100.0 7.4E-32 1.6E-36 243.5 7.8 181 1-215 240-420 (421)
11 PRK09463 fadE acyl-CoA dehydro 100.0 1.1E-26 2.4E-31 241.8 26.6 175 2-208 289-466 (777)
12 PRK11561 isovaleryl CoA dehydr 99.9 1.8E-26 4E-31 232.6 16.2 183 1-215 259-442 (538)
13 cd01161 VLCAD Very long chain 99.9 5.8E-26 1.3E-30 224.9 16.4 183 1-215 225-407 (409)
14 cd01151 GCD Glutaryl-CoA dehyd 99.9 4.5E-26 9.7E-31 224.1 15.4 179 1-214 204-382 (386)
15 KOG0137 Very-long-chain acyl-C 99.9 1.5E-24 3.3E-29 211.2 25.5 182 1-214 279-460 (634)
16 PRK12341 putative acyl-CoA deh 99.9 3.9E-26 8.5E-31 224.1 14.5 182 1-216 199-380 (381)
17 TIGR03203 pimD_small pimeloyl- 99.9 5.9E-26 1.3E-30 222.5 14.8 172 10-210 203-374 (378)
18 PLN02526 acyl-coenzyme A oxida 99.9 7.2E-26 1.6E-30 224.3 15.2 179 2-215 221-399 (412)
19 PRK03354 crotonobetainyl-CoA d 99.9 6.1E-26 1.3E-30 222.7 14.4 183 1-217 198-380 (380)
20 cd01162 IBD Isobutyryl-CoA deh 99.9 1E-25 2.2E-30 220.7 15.8 180 2-214 195-374 (375)
21 PRK13026 acyl-CoA dehydrogenas 99.9 1.4E-24 3E-29 225.4 24.9 175 2-208 288-465 (774)
22 TIGR03207 cyc_hxne_CoA_dh cycl 99.9 9E-26 2E-30 220.8 14.2 174 2-210 196-369 (372)
23 cd01155 ACAD_FadE2 Acyl-CoA de 99.9 1.4E-25 3E-30 221.2 15.1 182 1-214 211-394 (394)
24 PF01756 ACOX: Acyl-CoA oxidas 99.9 3.8E-25 8.2E-30 195.8 15.4 125 250-374 1-129 (187)
25 PTZ00461 isovaleryl-CoA dehydr 99.9 1.7E-25 3.7E-30 221.6 14.6 180 2-215 229-408 (410)
26 cd01157 MCAD Medium chain acyl 99.9 1.6E-25 3.4E-30 219.6 14.2 179 2-214 199-377 (378)
27 COG1960 CaiA Acyl-CoA dehydrog 99.9 2.6E-25 5.7E-30 219.1 14.6 178 8-216 213-390 (393)
28 cd01160 LCAD Long chain acyl-C 99.9 2.7E-25 5.9E-30 217.3 14.4 177 2-212 195-371 (372)
29 cd01154 AidB Proteins involved 99.9 6.8E-25 1.5E-29 217.7 16.7 184 1-213 234-417 (418)
30 PLN02519 isovaleryl-CoA dehydr 99.9 1.8E-24 4E-29 213.8 15.4 181 1-215 223-403 (404)
31 PTZ00456 acyl-CoA dehydrogenas 99.9 2.6E-24 5.7E-29 221.3 15.7 192 1-213 278-479 (622)
32 PLN02876 acyl-CoA dehydrogenas 99.9 4.3E-24 9.2E-29 228.1 16.3 182 2-215 636-819 (822)
33 cd01156 IVD Isovaleryl-CoA deh 99.9 3.8E-24 8.3E-29 209.5 14.1 179 2-214 198-376 (376)
34 cd01158 SCAD_SBCAD Short chain 99.9 8.7E-24 1.9E-28 206.7 14.8 179 2-214 195-373 (373)
35 PF00441 Acyl-CoA_dh_1: Acyl-C 99.9 4.5E-23 9.7E-28 175.5 13.4 147 47-213 4-150 (150)
36 cd00567 ACAD Acyl-CoA dehydrog 99.9 5E-23 1.1E-27 197.6 14.5 176 2-210 152-327 (327)
37 TIGR03204 pimC_large pimeloyl- 99.9 7.6E-23 1.6E-27 201.7 14.1 173 10-213 207-393 (395)
38 cd01153 ACAD_fadE5 Putative ac 99.9 2.3E-22 5E-27 199.1 15.9 186 1-207 209-400 (407)
39 cd01159 NcnH Naphthocyclinone 99.9 4.5E-21 9.8E-26 187.5 15.1 198 1-213 170-369 (370)
40 cd01152 ACAD_fadE6_17_26 Putat 99.9 1.4E-21 3.1E-26 191.7 10.9 169 10-213 203-379 (380)
41 KOG0138 Glutaryl-CoA dehydroge 99.9 9.1E-22 2E-26 177.7 7.8 179 1-214 248-426 (432)
42 cd01163 DszC Dibenzothiophene 99.8 3.9E-20 8.4E-25 181.4 14.8 182 1-201 179-361 (377)
43 PTZ00457 acyl-CoA dehydrogenas 99.8 2.3E-16 5E-21 158.5 27.3 142 13-205 218-362 (520)
44 KOG1469 Predicted acyl-CoA deh 99.7 5E-17 1.1E-21 145.2 9.0 175 12-215 209-383 (392)
45 TIGR02309 HpaB-1 4-hydroxyphen 99.3 1.3E-11 2.8E-16 123.7 13.0 139 12-180 251-391 (477)
46 PF08028 Acyl-CoA_dh_2: Acyl-C 99.2 2.8E-10 6.1E-15 95.1 10.5 128 60-196 1-128 (134)
47 TIGR02310 HpaB-2 4-hydroxyphen 94.4 0.54 1.2E-05 47.9 11.9 71 98-175 328-398 (519)
48 COG2368 Aromatic ring hydroxyl 90.4 4.3 9.3E-05 40.7 11.9 72 98-176 324-395 (493)
49 PF03241 HpaB: 4-hydroxyphenyl 83.7 6.1 0.00013 35.3 8.1 74 98-178 44-117 (205)
50 PTZ00457 acyl-CoA dehydrogenas 73.6 20 0.00044 36.8 9.2 84 72-175 416-499 (520)
51 KOG0137 Very-long-chain acyl-C 47.1 76 0.0016 32.8 7.5 68 97-175 536-603 (634)
52 PF10799 YliH: Biofilm formati 43.9 16 0.00035 29.0 1.8 28 347-374 30-57 (127)
53 PF02607 B12-binding_2: B12 bi 42.3 81 0.0018 22.8 5.5 38 335-372 42-79 (79)
54 PRK12302 bssR biofilm formatio 30.3 38 0.00081 26.6 1.9 28 347-374 30-57 (127)
55 PF02337 Gag_p10: Retroviral G 29.8 1.2E+02 0.0025 23.4 4.5 44 327-372 28-71 (90)
56 PF10925 DUF2680: Protein of u 26.7 1.1E+02 0.0024 21.5 3.6 28 342-369 24-51 (59)
57 PF06892 Phage_CP76: Phage reg 25.7 4.2E+02 0.0092 22.6 8.9 81 289-369 50-135 (162)
58 KOG1941 Acetylcholine receptor 25.0 5.8E+02 0.013 25.2 9.1 101 52-169 204-308 (518)
59 PF02268 TFIIA_gamma_N: Transc 23.6 2.4E+02 0.0052 19.0 4.9 32 337-368 14-45 (49)
60 COG1902 NemA NADH:flavin oxido 23.0 32 0.0007 33.6 0.5 61 161-226 157-219 (363)
No 1
>KOG0136 consensus Acyl-CoA oxidase [Lipid transport and metabolism]
Probab=100.00 E-value=2.8e-79 Score=598.14 Aligned_cols=365 Identities=48% Similarity=0.732 Sum_probs=342.5
Q ss_pred CCCCcCCCCCcCceEEeccCcccCcccccCcccccCCCceeecCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 017243 1 MKFGNGAYNTMDNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRY 80 (375)
Q Consensus 1 ~k~G~~~~~~~dng~i~Fd~vRIP~~~lL~~~~~v~~~G~~~~~~~~~~~~~~~l~~~R~~~~~~~~~~~~~al~ia~rY 80 (375)
|||| ++|+|||++-||||||||+|||+|+.+|.+||+|+.|+.++ ..|++|++.|..++.....++.+|++||+||
T Consensus 239 ~Kmg---~ng~dNGfL~f~nvRIPR~nmLmr~~kV~~dGtyv~p~~~~-l~Y~tMv~vRs~mv~d~a~~La~A~tIAtRY 314 (670)
T KOG0136|consen 239 PKMG---FNGVDNGFLGFDNVRIPRTNMLMRHAKVEPDGTYVKPPHPK-LGYGTMVYVRSLMVMDQARFLAKAATIATRY 314 (670)
T ss_pred cccc---ccCCccceeeecceeechHhhhhhhheecCCCccccCCccc-cceeeeEEEeehhHHHHHHHHHHHHHHHHHH
Confidence 6999 99999999999999999999999999999999999987666 8999999999999999999999999999999
Q ss_pred hccccccCCCCCCCCccccccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCChhhHHHHhhhhhHHHHH
Q 017243 81 SAVRRQFGSKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTT 160 (375)
Q Consensus 81 a~~R~qfg~~~~~~e~~i~~~q~~q~~L~~~la~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~K~~~t~ 160 (375)
|.+||||...|+.+|++|+|||+||+||+|.||.+||+++++.++.++|....+++.+||++.++++|+++|++|+++||
T Consensus 315 SaVRRQ~~i~pg~~E~qIlDyqTQQ~rlFP~LA~ayAf~~~g~~l~~~Y~~~~~~l~~g~~s~LpeLHaLS~gLKa~~T~ 394 (670)
T KOG0136|consen 315 SAVRRQSEIRPGQPEVQILDYQTQQYRLFPQLARAYAFRFVGEELWELYEDVLKELENGNFSRLPELHALSAGLKAVVTW 394 (670)
T ss_pred HHHhhccCCCCCCCCceeeechhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhchHHHHHHhhhHHHhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcccccccccCCcccccccccccccccccccchHHHHHHHHHHHHHhhcCCCCcchhhhhcccchHHhh
Q 017243 161 ATADGIEECRKLCGGHGYLCSSGLPELFAVYVPACTYEGDNIVLLLQVARFLMKTVSQLGYGNMPVGTTTYMGRAEQLMQ 240 (375)
Q Consensus 161 ~~~~~~~~~r~~~GG~G~~~~~~l~~~~~d~~~~~t~EGdn~Vl~~~iar~ll~~~~~~~~~~~~~~~~~~l~~~~~~~~ 240 (375)
.+.++++.||..||||||+..++++.+|.++.+.|||||+|.||++|+||+|+|.|.+..+|+++.++++|+......
T Consensus 395 ~~~~GIE~~R~aCGGHGYs~~Sglp~iY~~~v~~CTYEGEN~VmlLQ~ARfLmKs~~~~~sgk~l~~~v~yl~~~~~~-- 472 (670)
T KOG0136|consen 395 DTAQGIEQCRLACGGHGYSQASGLPEIYGVAVGACTYEGENTVLLLQVARFLVKSYAQVLSGKSLSPTVAYLAASALK-- 472 (670)
T ss_pred hhhhHHHHHHHhcCCccchhhcCCccceeeeeeeeeeeccceeehHHHHHHHHHHHHHHhcCCCCCCchhhhhhcccC--
Confidence 999999999999999999999999999999999999999999999999999999999999999888899999754222
Q ss_pred hcCCCccccccCCHHHHHHHHHHHHHHHHHHHHHHHh----hccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 017243 241 CHCGVQKAEDWLNPSAILEAFEARAIRMSVACAQNLS----KFTNQEEGFAELAADLVEAAVAHCQLIVVSKFIEKLQQD 316 (375)
Q Consensus 241 ~~~~~~~~~~~~~~~~l~~~~~~r~~~l~~~~~~~l~----~~~~~~~~~n~~~~~~~~la~A~~~~~~l~~F~~~v~~~ 316 (375)
+.......+|.+ + ++++|++++++++..+++++. .+.+...+||.++++++++|++|+++++++.|.+.|.+.
T Consensus 473 -~~~~~~~~~~~~-e-~~~a~e~~A~r~~~~a~~~l~~~~~~~~~~e~A~N~~sv~L~~Aa~~H~~~~vvk~f~~kv~~~ 549 (670)
T KOG0136|consen 473 -PQLISGAGDWLN-E-YVEAFEHRAARQVWIAAENLLKLMSSGESQEVAWNLTSVELTRAARAHCRLFVVKTFLEKVEKH 549 (670)
T ss_pred -ccccccccchhH-H-HHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 111233466766 6 999999999999999999864 456788999999999999999999999999999999975
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHhhhhHHHhc-CCCCHHHHHHHHHHHHHHHHhhcccC
Q 017243 317 IPGKGVKPILEILCHIYALHLVHKHLGDFVST-GCITAKQASLANEQLRSLYSQVFTCV 374 (375)
Q Consensus 317 ~~~~~~~~vL~~L~~LyaL~~I~~~~~~fl~~-g~ls~~q~~~l~~~i~~l~~~lrp~~ 374 (375)
..++.+++||++||.||+++.|.+++|+|+.. +|+|+.|++.+++++.++++.|||+|
T Consensus 550 ~~~~~vk~vL~~L~~Ly~~y~il~~~g~fl~~~~~mt~~q~~~v~~~l~~lL~~iRpnA 608 (670)
T KOG0136|consen 550 ISDPAVKEVLKNLLELYLLYEILKNSGDFLRFNNFMTDTQLDQVRDQLYELLTKIRPNA 608 (670)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHhhHHHHhhccCCCHHHHHHHHHHHHHHHHHhCcCe
Confidence 67889999999999999999999999999998 99999999999999999999999997
No 2
>KOG0135 consensus Pristanoyl-CoA/acyl-CoA oxidase [Lipid transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=1e-76 Score=568.06 Aligned_cols=367 Identities=31% Similarity=0.457 Sum_probs=323.1
Q ss_pred CCCCcCCCCCcCceEEeccCcccCcccccCcccccCCCceeecC-CCch--h-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017243 1 MKFGNGAYNTMDNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQS-NVPR--Q-LLYGTMVYVRQTIVADASCALSRAVCI 76 (375)
Q Consensus 1 ~k~G~~~~~~~dng~i~Fd~vRIP~~~lL~~~~~v~~~G~~~~~-~~~~--~-~~~~~l~~~R~~~~~~~~~~~~~al~i 76 (375)
+|.| +||+|||+++||||||||+|||+++++|+|||+|+++ .++. | .+++.|..||++|+..+++.++-+++|
T Consensus 252 ~K~G---lnGVDNG~l~F~nvRIPRenLLNr~gDVtpDG~YvSs~k~~~qrfgA~L~~Ls~GRvgIa~~ai~~lkla~tI 328 (661)
T KOG0135|consen 252 HKIG---LNGVDNGFLWFDNVRIPRENLLNRFGDVTPDGKYVSSFKDPSQRFGASLGSLSSGRVGIASSAIGALKLALTI 328 (661)
T ss_pred cccc---cccccCceEEEecccCchHHHhhhccCcCCCCeeeccCCChhhhhchhhcccccchhHHHHHHHHHHHHHHHH
Confidence 4889 9999999999999999999999999999999999995 2222 2 568889999999999999999999999
Q ss_pred HHHhhccccccCCCCCCCCccccccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCChhhHHHHhhhhhH
Q 017243 77 ATRYSAVRRQFGSKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKS 156 (375)
Q Consensus 77 a~rYa~~R~qfg~~~~~~e~~i~~~q~~q~~L~~~la~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~K~ 156 (375)
|+|||..|||||++.+++|+||+|||+||+||+|++|.+|+++++.+++...|.+.+.+.+.++. .+++|+++|++|+
T Consensus 329 AIRYS~sRRQFGP~~~geEv~iLeYp~qQ~RL~P~LAaaya~~fas~~l~~~y~E~~~~~~~~~n--~keiHALsSg~K~ 406 (661)
T KOG0135|consen 329 AIRYSLSRRQFGPTKNGEEVPILEYPSQQYRLLPYLAAAYALSFASKYLVMIYVERTPRTNEGVN--SKEIHALSSGLKP 406 (661)
T ss_pred hhhhHHhHhhhCCCCCCCcceeeechhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccc--hhHHHHHHhccch
Confidence 99999999999998788999999999999999999999999999999999999988777665542 4899999999999
Q ss_pred HHHHHHHHHHHHHHHHcccccccccCCcccccccccccccccccccchHHHHHHHHHHHHHhhcCCCCcchhhhhcccch
Q 017243 157 LTTTATADGIEECRKLCGGHGYLCSSGLPELFAVYVPACTYEGDNIVLLLQVARFLMKTVSQLGYGNMPVGTTTYMGRAE 236 (375)
Q Consensus 157 ~~t~~~~~~~~~~r~~~GG~G~~~~~~l~~~~~d~~~~~t~EGdn~Vl~~~iar~ll~~~~~~~~~~~~~~~~~~l~~~~ 236 (375)
++||...+++++|||+||||||+.+|+++.+..|.++++||||||+||+||+++.||++|....+.+ |.++..|++...
T Consensus 407 ~~TW~~~~~LqecREAcGGhGYl~~nRlg~Lr~D~D~~~TfEGDNnVLlQqvsn~LL~~y~~~~~e~-p~~~~~~ln~~~ 485 (661)
T KOG0135|consen 407 VATWHNMRALQECREACGGHGYLQENRLGQLRDDHDPFQTFEGDNNVLLQQVSNALLAQYVSQKKET-PLSFVGFLNEYP 485 (661)
T ss_pred hhhHhhHHHHHHHHHHhccchHHHHHHhcccccCCCccceeecCceeHHHHHHHHHHHHHHHhhccC-CchHHHHHhhcc
Confidence 9999999999999999999999999999999999999999999999999999999999998754543 444666665443
Q ss_pred HHhhh-cCCCccccccCCHHHHHHHHHHHHHHHHHHHHHHH---hhccCchhhHHHHHHH-HHHHHHHHHHHHHHHHHHH
Q 017243 237 QLMQC-HCGVQKAEDWLNPSAILEAFEARAIRMSVACAQNL---SKFTNQEEGFAELAAD-LVEAAVAHCQLIVVSKFIE 311 (375)
Q Consensus 237 ~~~~~-~~~~~~~~~~~~~~~l~~~~~~r~~~l~~~~~~~l---~~~~~~~~~~n~~~~~-~~~la~A~~~~~~l~~F~~ 311 (375)
...+. .......+.+.++++++..|..|...++...+... +.+.+.+++||.++.+ +..+|.||+|+.+++.|++
T Consensus 486 s~~~~~~~s~~~~d~l~~~~f~~~~~~l~~~lLl~t~a~~~~~l~~g~~~fea~n~~q~h~~~~La~a~~E~~il~~~l~ 565 (661)
T KOG0135|consen 486 SSPDPVLASQLVSDTLRSSQFQLCYFWLRCHLLLETVASRERQLQSGLSSFEARNKCQVHQLRELALAFTEHTILQRFLD 565 (661)
T ss_pred ccCCccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 22221 11123445677888888777777776777665543 5567888999998865 4669999999999999999
Q ss_pred HHhccCCCCChHHHHHHHHHHHHHHHHHhhhhHHHhcCCCCHHHHHHHHHHHHHHHHhhcccC
Q 017243 312 KLQQDIPGKGVKPILEILCHIYALHLVHKHLGDFVSTGCITAKQASLANEQLRSLYSQVFTCV 374 (375)
Q Consensus 312 ~v~~~~~~~~~~~vL~~L~~LyaL~~I~~~~~~fl~~g~ls~~q~~~l~~~i~~l~~~lrp~~ 374 (375)
++.+ +++++++.||+.+++||+||+|++|++.|+..||+|++.+..|++.+..+|.++||++
T Consensus 566 h~~k-~~~~s~k~vL~l~~dlyal~lLek~~~ll~~~gy~s~~~a~~vr~~~l~lc~elr~~A 627 (661)
T KOG0135|consen 566 HVHK-LPDPSVKAVLGLVRDLYALWLLEKHPALLYITGYVSGEFAGDVREKVLKLCAELRPVA 627 (661)
T ss_pred HHhc-CCChhHHHHHHHHHHHHHHHHHHHhHHHHhhccccccchHHHHHHHHHHHHHhccHHH
Confidence 9999 9999999999999999999999999999999999999999999999999999999986
No 3
>PLN02443 acyl-coenzyme A oxidase
Probab=100.00 E-value=3.4e-73 Score=584.41 Aligned_cols=374 Identities=87% Similarity=1.347 Sum_probs=336.9
Q ss_pred CCCCcCCCCCcCceEEeccCcccCcccccCcccccCCCceeecCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 017243 1 MKFGNGAYNTMDNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRY 80 (375)
Q Consensus 1 ~k~G~~~~~~~dng~i~Fd~vRIP~~~lL~~~~~v~~~G~~~~~~~~~~~~~~~l~~~R~~~~~~~~~~~~~al~ia~rY 80 (375)
+|+|..+++++|||+|.|||||||++||||++++|+++|+|..++...+..+++|..+|+.+++.++|.+++|+++|++|
T Consensus 227 ~K~G~~~~~~~dng~l~Fd~VrVP~~nlLg~~~~v~~~G~~~~~~~~~~~~~~~l~~~R~~i~a~a~g~~~~Al~iAvrY 306 (664)
T PLN02443 227 MKFGNGAYNTMDNGFLRFDHVRIPRDQMLMRLSKVTREGKYVQSDVPRQLVYGTMVYVRQTIVADASTALSRAVCIATRY 306 (664)
T ss_pred cccCcccCCCCcceEEEeCcEEECHHHcCCcccccCCCCceecccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46772235679999999999999999999999999999999876433337899999999999999999999999999999
Q ss_pred hccccccCCCCCCCCccccccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCChhhHHHHhhhhhHHHHH
Q 017243 81 SAVRRQFGSKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTT 160 (375)
Q Consensus 81 a~~R~qfg~~~~~~e~~i~~~q~~q~~L~~~la~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~K~~~t~ 160 (375)
|.+|+|||.+.+.+|.|+++||++|++|+|++|.+|+++++..++.+.|++....++.++.+...++|+++|++|+++||
T Consensus 307 a~~R~QFg~~~~~~e~qii~y~~~Q~rL~~~la~~~a~r~~~~~a~~~~~~~~~~~~~~~~~~~~e~h~~aa~~Ka~~t~ 386 (664)
T PLN02443 307 SAVRRQFGSQDGGPETQVIDYKTQQSRLFPLLASAYAFRFVGEWLKWLYTDVTQRLEANDFSTLPEAHACTAGLKSLTTS 386 (664)
T ss_pred HHccEeCCCCCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhHHHHHHHHHHHHHHHH
Confidence 99999999876667999999999999999999999999999999998887655544555555567799999999999999
Q ss_pred HHHHHHHHHHHHcccccccccCCcccccccccccccccccccchHHHHHHHHHHHHHhhcCCCCcchhhhhcccchHHhh
Q 017243 161 ATADGIEECRKLCGGHGYLCSSGLPELFAVYVPACTYEGDNIVLLLQVARFLMKTVSQLGYGNMPVGTTTYMGRAEQLMQ 240 (375)
Q Consensus 161 ~~~~~~~~~r~~~GG~G~~~~~~l~~~~~d~~~~~t~EGdn~Vl~~~iar~ll~~~~~~~~~~~~~~~~~~l~~~~~~~~ 240 (375)
.+.+++++|||+||||||+.+++++++++|+++.+||||||+||++++||++++.+++..+++++.+++.||.+.+....
T Consensus 387 ~a~~~i~~~rq~cGG~Gy~~~~~l~~l~~d~~~~~t~EGdn~Vl~~~iar~ll~~~~~~~~~~~~~~~~~yl~~~~~~~~ 466 (664)
T PLN02443 387 ATADGIEECRKLCGGHGYLCSSGLPELFAVYVPACTYEGDNVVLLLQVARFLMKTVSQLGSGKKPVGTTAYMGRVQHLLQ 466 (664)
T ss_pred HHHHHHHHHHHHccCccccccCcHHHHHhhhhcceeecCcHHHHHHHHHHHHHHHHHHhhcCCCCcchHHHHhhhhhhhc
Confidence 99999999999999999999999999999999999999999999999999999999888788888788899976554443
Q ss_pred hcCCCccccccCCHHHHHHHHHHHHHHHHHHHHHHHhhccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCC
Q 017243 241 CHCGVQKAEDWLNPSAILEAFEARAIRMSVACAQNLSKFTNQEEGFAELAADLVEAAVAHCQLIVVSKFIEKLQQDIPGK 320 (375)
Q Consensus 241 ~~~~~~~~~~~~~~~~l~~~~~~r~~~l~~~~~~~l~~~~~~~~~~n~~~~~~~~la~A~~~~~~l~~F~~~v~~~~~~~ 320 (375)
......+.++|.|+++++++|++|+.+++..++++++++.+..++||+++++++++|+||++++++++|+++|++..+++
T Consensus 467 ~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~a~n~~~~~~~~~a~ah~~~~~~~~f~~~~~~~~~~~ 546 (664)
T PLN02443 467 CRCGVQTAEDWLNPSVVLEAFEARAARMAVTCAQNLSKFENQEAGFQELSADLVEAAVAHCQLIVVSKFIEKLQQDIPGK 546 (664)
T ss_pred ccccccccccccCHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCh
Confidence 33333455789999999999999999999999999987767789999999999999999999999999999998634588
Q ss_pred ChHHHHHHHHHHHHHHHHHhhhhHHHhcCCCCHHHHHHHHHHHHHHHHhhcccC
Q 017243 321 GVKPILEILCHIYALHLVHKHLGDFVSTGCITAKQASLANEQLRSLYSQVFTCV 374 (375)
Q Consensus 321 ~~~~vL~~L~~LyaL~~I~~~~~~fl~~g~ls~~q~~~l~~~i~~l~~~lrp~~ 374 (375)
++++||+.||+||+|+.|+++.+||+++|+||++|++.|++.|.+||.+||||+
T Consensus 547 ~~~~~L~~l~~L~~l~~i~~~~~~fl~~~~ls~~~~~~i~~~i~~l~~~lrp~a 600 (664)
T PLN02443 547 GVKKQLQNLCYIYALYLLHKHLGDFLSTGCITPKQASLANDQLRSLYSQVRPNA 600 (664)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhHhH
Confidence 999999999999999999999999999999999999999999999999999996
No 4
>PLN02636 acyl-coenzyme A oxidase
Probab=100.00 E-value=6.1e-73 Score=585.07 Aligned_cols=365 Identities=32% Similarity=0.495 Sum_probs=325.6
Q ss_pred CCCCcCCCCCcCceEEeccCcccCcccccCcccccCCCceeecC-C----CchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017243 1 MKFGNGAYNTMDNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQS-N----VPRQLLYGTMVYVRQTIVADASCALSRAVC 75 (375)
Q Consensus 1 ~k~G~~~~~~~dng~i~Fd~vRIP~~~lL~~~~~v~~~G~~~~~-~----~~~~~~~~~l~~~R~~~~~~~~~~~~~al~ 75 (375)
+||| ++++|||+|.|||||||++||||++++|++||+|+++ + ++. .++++|..+|+.+++.++|.+++|++
T Consensus 275 ~K~G---~~g~dng~l~FdnVrVP~~nlLg~~g~v~~~G~y~~~~~~~~~gf~-~~~~~l~~~R~~iaa~a~g~a~~Al~ 350 (686)
T PLN02636 275 HKVG---LNGVDNGALRFRSVRIPRDNLLNRFGDVSRDGKYTSSLPTINKRFA-ATLGELVGGRVGLAYGSVGVLKASNT 350 (686)
T ss_pred CccC---CCCCcceEEEEeeEEECHHHhccccccccCCCcccccCCCcchHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5899 9999999999999999999999999999999999983 1 233 78999999999999999999999999
Q ss_pred HHHHhhccccccCCCCCCCCccccccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCChhhHHHHhhhhh
Q 017243 76 IATRYSAVRRQFGSKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLK 155 (375)
Q Consensus 76 ia~rYa~~R~qfg~~~~~~e~~i~~~q~~q~~L~~~la~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~K 155 (375)
+|++|+..|+|||. ++++|+||++||+||++|+|++|.+|+++++++.+...+.... +.++.+...++|.++|++|
T Consensus 351 iAvrYa~~R~qFg~-p~~~e~~I~d~q~vQ~~La~~la~~~a~~~a~~~l~~~~~~~~---~~~~~~~~~~~~~~as~aK 426 (686)
T PLN02636 351 IAIRYSLLRQQFGP-PKQPEISILDYQSQQHKLMPMLASTYAFHFATEYLVERYSEMK---KTHDDQLVADVHALSAGLK 426 (686)
T ss_pred HHHHHHHcCEeCCC-CCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hcCCcccchhhHHHHHHHH
Confidence 99999999999997 5678999999999999999999999999999998887775432 2344333467999999999
Q ss_pred HHHHHHHHHHHHHHHHHcccccccccCCcccccccccccccccccccchHHHHHHHHHHHHHhhcCCCCcchhhhhcccc
Q 017243 156 SLTTTATADGIEECRKLCGGHGYLCSSGLPELFAVYVPACTYEGDNIVLLLQVARFLMKTVSQLGYGNMPVGTTTYMGRA 235 (375)
Q Consensus 156 ~~~t~~~~~~~~~~r~~~GG~G~~~~~~l~~~~~d~~~~~t~EGdn~Vl~~~iar~ll~~~~~~~~~~~~~~~~~~l~~~ 235 (375)
+++||.+.+++++|||+||||||+.+++++++++|+++.+||||||+||+++|||+|++.|++..+|.++.+++.||.+.
T Consensus 427 ~~~t~~a~~~~~~~rq~~GG~Gy~~~~~l~~l~rd~~~~~t~EG~n~Vl~~~iAr~ll~~~~~~~~~~~~~~~~~yl~~~ 506 (686)
T PLN02636 427 AYITSYTAKALSTCREACGGHGYAAVNRFGSLRNDHDIFQTFEGDNTVLLQQVAADLLKQYKEKFQGGTLSVTWNYLRES 506 (686)
T ss_pred HHHHHHHHHHHHHHHHHhcCCcccCcCcHHHHHHHhhhheeecChHHHHHHHHHHHHHHHHHHHhccCCCchHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999998877777666788898654
Q ss_pred hHH-hhhcCC----CccccccCCHHHHHHHHHHHHHHHHHHHHHHHhh---ccCchhhHHHHHHHHHHHHHHHHHHHHHH
Q 017243 236 EQL-MQCHCG----VQKAEDWLNPSAILEAFEARAIRMSVACAQNLSK---FTNQEEGFAELAADLVEAAVAHCQLIVVS 307 (375)
Q Consensus 236 ~~~-~~~~~~----~~~~~~~~~~~~l~~~~~~r~~~l~~~~~~~l~~---~~~~~~~~n~~~~~~~~la~A~~~~~~l~ 307 (375)
... ...+.+ ..+.++|.|+++++++|++|+.+++..++.++++ +.+.+++||+++++++++|+||+++++++
T Consensus 507 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~awn~~~~~l~~~a~ah~~~~~~~ 586 (686)
T PLN02636 507 MNTYLSQPNPVTTRWEGEEHLRDPKFQLDAFRYRTSRLLQTAALRLRKHSKTLGSFGAWNRCLNHLLTLAESHIESVILA 586 (686)
T ss_pred hhhhhcccccccccccchhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 211 111111 1234569999999999999999999999998864 33457899999999999999999999999
Q ss_pred HHHHHHhccCCCCChHHHHHHHHHHHHHHHHHhhhhHHHhcCCCCHHHHHHHHHHHHHHHHhhcccC
Q 017243 308 KFIEKLQQDIPGKGVKPILEILCHIYALHLVHKHLGDFVSTGCITAKQASLANEQLRSLYSQVFTCV 374 (375)
Q Consensus 308 ~F~~~v~~~~~~~~~~~vL~~L~~LyaL~~I~~~~~~fl~~g~ls~~q~~~l~~~i~~l~~~lrp~~ 374 (375)
+|++.|++ ++++++++||++||+||+|+.|++++|||+++||||++|++.|++.+.+||.+|||++
T Consensus 587 ~f~~~v~~-~~~~~~~~vL~~l~~Ly~l~~i~~~~g~fl~~~~l~~~~~~~i~~~i~~l~~~lrp~a 652 (686)
T PLN02636 587 KFIEAVER-CPDRSTRAALKLVCDLYALDRIWKDIGTYRNVDYVAPNKAKAIHKLTEYLSFQVRNVA 652 (686)
T ss_pred HHHHHHhh-cCCHHHHHHHHHHHHHHhHHHHHHhHHHHHHcCCCCHHHHHHHHHHHHHHHHHHhHhH
Confidence 99999987 7799999999999999999999999999999999999999999999999999999986
No 5
>PLN02312 acyl-CoA oxidase
Probab=100.00 E-value=3.3e-71 Score=571.01 Aligned_cols=359 Identities=26% Similarity=0.404 Sum_probs=317.0
Q ss_pred CCCCcCCCCCcCceEEeccCcccCcccccCcccccCCCceeecCC---Cchh-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017243 1 MKFGNGAYNTMDNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSN---VPRQ-LLYGTMVYVRQTIVADASCALSRAVCI 76 (375)
Q Consensus 1 ~k~G~~~~~~~dng~i~Fd~vRIP~~~lL~~~~~v~~~G~~~~~~---~~~~-~~~~~l~~~R~~~~~~~~~~~~~al~i 76 (375)
+||| ++++|||+|+|||||||++||||++++|+++|+|+++. +..+ .++++|..+|+.+++.++|.+++|+++
T Consensus 280 ~K~G---~~g~dng~l~FdnVrVP~~nlLg~~~~V~~~G~y~~~~~~~~~gf~~~~~~l~~~R~~iaa~a~g~a~~Al~i 356 (680)
T PLN02312 280 HKIG---LNGVDNGRIWFDNLRIPRENLLNSVADVSPDGKYVSAIKDPDQRFGAFLAPLTSGRVTIAVSAIYSSKVGLAI 356 (680)
T ss_pred Cccc---ccCCCceEEEEccEEECHHHhCCccceeCCCCceecCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5899 99999999999999999999999999999999999852 1221 568999999999999999999999999
Q ss_pred HHHhhccccccCCCCCCCCccccccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCChhhHHHHhhhhhH
Q 017243 77 ATRYSAVRRQFGSKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKS 156 (375)
Q Consensus 77 a~rYa~~R~qfg~~~~~~e~~i~~~q~~q~~L~~~la~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~K~ 156 (375)
|++||..|+|||.+++++|+||++||+||++|+|++|.+|++++++.++.++|.+. ......++|.++|++|+
T Consensus 357 AvrYa~~R~QFg~~~~~~E~~I~dyq~~Q~rLa~~la~~~a~~~~a~~l~~~~~~~-------~~~~~~~~~~~as~aKa 429 (680)
T PLN02312 357 AIRYSLSRRAFSVTPNGPEVLLLDYPSHQRRLLPLLAKTYAMSFAANDLKMIYVKR-------TPESNKAIHVVSSGFKA 429 (680)
T ss_pred HHHHHHhCeecCCCCCCccchHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-------cccccchhHHHHHHHHH
Confidence 99999999999987788899999999999999999999999999999888777431 11122568999999999
Q ss_pred HHHHHHHHHHHHHHHHcccccccccCCcccccccccccccccccccchHHHHHHHHHHHHHhhcCCCCcch-h-hhhccc
Q 017243 157 LTTTATADGIEECRKLCGGHGYLCSSGLPELFAVYVPACTYEGDNIVLLLQVARFLMKTVSQLGYGNMPVG-T-TTYMGR 234 (375)
Q Consensus 157 ~~t~~~~~~~~~~r~~~GG~G~~~~~~l~~~~~d~~~~~t~EGdn~Vl~~~iar~ll~~~~~~~~~~~~~~-~-~~~l~~ 234 (375)
++||.+.+++++|||+||||||+.+++++++++|+++.+||||||+||+++|||++++.|.+..+|+++.+ + +.|+..
T Consensus 430 ~~t~~a~~~~~~~rq~~GG~Gy~~~~~l~~l~rd~~~~~t~EG~n~Vl~~~iAr~ll~~~~~~~~~~~~~~~~~~~~~~~ 509 (680)
T PLN02312 430 VLTWHNMRTLQECREACGGQGLKTENRVGQLKAEYDVQSTFEGDNNVLMQQVSKALLAEYVSAKKRNKPFKGLGLEHMNG 509 (680)
T ss_pred HHHHHHHHHHHHHHHHhcCccccccCcHHHHHHhhhhheeecCcHHHHHHHHHHHHHHHHHHHhccCCCCcchhhhhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999988777776544 2 566642
Q ss_pred chHHhhhcCCCccccccCCHHHHHHHHHHHHHHHHHHHHHHHhh----ccCchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017243 235 AEQLMQCHCGVQKAEDWLNPSAILEAFEARAIRMSVACAQNLSK----FTNQEEGFAELAADLVEAAVAHCQLIVVSKFI 310 (375)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~r~~~l~~~~~~~l~~----~~~~~~~~n~~~~~~~~la~A~~~~~~l~~F~ 310 (375)
... ......+..+|.|+++++++|++|+.+++.+++++|++ +.+...+||.+...++++|+||++++++++|+
T Consensus 510 ~~~---~~~~~~~~~~l~~~~~~~~~~~~r~~~~~~~~~~~l~~~~~~~~~~~~a~n~~~~~~~~~a~ah~~~~i~~~F~ 586 (680)
T PLN02312 510 PRP---VIPTQLTSSTLRDSQFQLNLFCLRERDLLERFASEVSELQSKGESREFAFLLSYQLAEDLGRAFSERAILQTFL 586 (680)
T ss_pred ccc---cccccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 100 00011234689999999999999999999999998864 34457899999999999999999999999999
Q ss_pred HHHhccCCCCChHHHHHHHHHHHHHHHHHhhhhHHHhcCCCCHHHHHHHHHHHHHHHHhhcccC
Q 017243 311 EKLQQDIPGKGVKPILEILCHIYALHLVHKHLGDFVSTGCITAKQASLANEQLRSLYSQVFTCV 374 (375)
Q Consensus 311 ~~v~~~~~~~~~~~vL~~L~~LyaL~~I~~~~~~fl~~g~ls~~q~~~l~~~i~~l~~~lrp~~ 374 (375)
++|++ +.++++++||++||+||+|+.|+++ ++|+++||||++|++.|++.|.+||.+|||++
T Consensus 587 ~~i~~-~~~~~~~~vL~~L~~Lyal~~i~~~-~~fl~~~~ls~~~~~~i~~~i~~L~~~lrp~A 648 (680)
T PLN02312 587 DAEAN-LPTGSLKDVLGLLRSLYVLISLDED-PSFLRYGYLSPDNVALVRKEVAKLCGELRPHA 648 (680)
T ss_pred HHHhc-cCCHHHHHHHHHHHHHHhHHHHHhh-HHHHhcCCCCHHHHHHHHHHHHHHHHHHhHhH
Confidence 99987 6789999999999999999999766 69999999999999999999999999999986
No 6
>PTZ00460 acyl-CoA dehydrogenase; Provisional
Probab=100.00 E-value=4.2e-70 Score=560.64 Aligned_cols=358 Identities=29% Similarity=0.457 Sum_probs=321.3
Q ss_pred CCCCcCCCCCcCceEEeccCcccCcccccCcccccCCCceeecCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 017243 1 MKFGNGAYNTMDNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRY 80 (375)
Q Consensus 1 ~k~G~~~~~~~dng~i~Fd~vRIP~~~lL~~~~~v~~~G~~~~~~~~~~~~~~~l~~~R~~~~~~~~~~~~~al~ia~rY 80 (375)
+||| +++.|||++.|||||||++||||++++|+++|+|+++++++ ..+++|..+|+.+++.++|.+++|+++|++|
T Consensus 223 ~k~G---~~~~dng~l~Fd~VrVP~~nlLg~~~~v~~~G~~~~~g~~~-~~~~~l~~~R~~iaa~~~g~a~~Al~iAvrY 298 (646)
T PTZ00460 223 PKMG---YAVKDNGFLSFDHYRIPLDSLLARYIKVSEDGQVERQGNPK-VSYASMMYMRNLIIDQYPRFAAQALTVAIRY 298 (646)
T ss_pred cccC---cCCCCceEEEeceEEECHHHhCCcccccCCCCccccCCcHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5899 99999999999999999999999999999999998876566 8899999999999999999999999999999
Q ss_pred hccccccCCCCCCCCccccccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCChhhHHHHhhhhhHHHHH
Q 017243 81 SAVRRQFGSKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTT 160 (375)
Q Consensus 81 a~~R~qfg~~~~~~e~~i~~~q~~q~~L~~~la~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~K~~~t~ 160 (375)
+..|+|||. ++++|.||++||+||++|+|++|.+|+++++.+++.+++++....++.++....+++|.++|++|+++||
T Consensus 299 a~~R~QFg~-~~~~E~pI~~yQ~~Q~rLa~~la~~~A~r~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~as~aK~~~t~ 377 (646)
T PTZ00460 299 SIYRQQFTN-DNKQENSVLEYQTQQQKLLPLLAEFYACIFGGLKIKELVDDNFNRVQKNDFSLLQLTHAILSAAKANYTY 377 (646)
T ss_pred HHccccCCC-CCCCCCcHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCccchhhhHHHHHHHHHHHHHH
Confidence 999999997 4567999999999999999999999999999999988887655444444444456789999999999999
Q ss_pred HHHHHHHHHHHHcccccccccCCcccccccccccccccccccchHHHHHHHHHHHHHhhcCC-CCcchhhhhcccchHHh
Q 017243 161 ATADGIEECRKLCGGHGYLCSSGLPELFAVYVPACTYEGDNIVLLLQVARFLMKTVSQLGYG-NMPVGTTTYMGRAEQLM 239 (375)
Q Consensus 161 ~~~~~~~~~r~~~GG~G~~~~~~l~~~~~d~~~~~t~EGdn~Vl~~~iar~ll~~~~~~~~~-~~~~~~~~~l~~~~~~~ 239 (375)
.+.+++++|||+||||||+.+++++++++|+++.+||||||+||++++||++++.+.+..++ +.+.+++.||.+....
T Consensus 378 ~a~~~~~~~~q~~GG~Gy~~~~~l~~~~rda~~~~t~eG~n~vl~~~iar~ll~~~~~~~~~~~~~~~~~~~l~~~~~~- 456 (646)
T PTZ00460 378 FVSNCAEWCRLSCGGHGYAHYSGLPAIYFDMSPNITLEGENQIMYLQLARYLLKQLQHAVQKPEKVPEYFNFLSHITEK- 456 (646)
T ss_pred HHHHHHHHHHHHhCCccccccCcHHHHHHHhccceeecCcHHHHHHHHHHHHHHHHHHhhcCCCcchhHHHHHHHhhhh-
Confidence 99999999999999999999999999999999999999999999999999999999876555 3455578898654211
Q ss_pred hhcCCCccccccCCHHHHHHHHHHHHHHHHHHHHHHHhh----ccCchhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 017243 240 QCHCGVQKAEDWLNPSAILEAFEARAIRMSVACAQNLSK----FTNQEEGFAE-LAADLVEAAVAHCQLIVVSKFIEKLQ 314 (375)
Q Consensus 240 ~~~~~~~~~~~~~~~~~l~~~~~~r~~~l~~~~~~~l~~----~~~~~~~~n~-~~~~~~~la~A~~~~~~l~~F~~~v~ 314 (375)
..++.+++++.++|++|+.+++..+++++++ +.+.+++||+ ++++++++|+||++++++++|++.|+
T Consensus 457 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~awn~~~~~~l~~~a~ah~~~~~~~~f~~~i~ 528 (646)
T PTZ00460 457 --------LADQTTIESLGQLLGLNCTILTIYAAKKIMDHINTGKDFQQSWDTKSGIALASAASRFIEYFNYLCFLDTIN 528 (646)
T ss_pred --------ccccCChHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 1235677889999999999999888887753 4566789999 78999999999999999999999998
Q ss_pred ccCCCCChHHHHHHHHHHHHHHHHHhhhhHHHhcCCCCHHHHHHHHHHHHHHHHhhcccC
Q 017243 315 QDIPGKGVKPILEILCHIYALHLVHKHLGDFVSTGCITAKQASLANEQLRSLYSQVFTCV 374 (375)
Q Consensus 315 ~~~~~~~~~~vL~~L~~LyaL~~I~~~~~~fl~~g~ls~~q~~~l~~~i~~l~~~lrp~~ 374 (375)
. . ++++++||++||+||+|+.|++++|||+++|++|++|++.|++.|.+||.+||||+
T Consensus 529 ~-~-~~~~~~vL~~l~~Ly~l~~i~~~~g~fl~~~~l~~~~~~~i~~~i~~l~~~lrp~a 586 (646)
T PTZ00460 529 N-A-NKSTKEILTQLADLYGITMLLNNPQGLIEKGQITVEQIKLLQETREQLYPIIKPNA 586 (646)
T ss_pred c-c-CHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhHhH
Confidence 5 3 78999999999999999999999999999999999999999999999999999996
No 7
>cd01150 AXO Peroxisomal acyl-CoA oxidase. Peroxisomal acyl-CoA oxidases (AXO) catalyze the first set in the peroxisomal fatty acid beta-oxidation, the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. In a second oxidative half-reaction, the reduced FAD is reoxidized by molecular oxygen. AXO is generally a homodimer, but it has been reported to form a different type of oligomer in yeast. There are several subtypes of AXO's, based on substrate specificity. Palmitoyl-CoA oxidase acts on straight-chain fatty acids and prostanoids; whereas, the closely related Trihydroxycoprostanoly-CoA oxidase has the greatest activity for 2-methyl branched side chains of bile precursors. Pristanoyl-CoA oxidase, acts on 2-methyl branched fatty acids. AXO has an additional domain, C-terminal to the region with similarity to acyl-CoA dehydrogenases, which is included in this alignment.
Probab=100.00 E-value=1.7e-68 Score=548.85 Aligned_cols=338 Identities=40% Similarity=0.620 Sum_probs=310.1
Q ss_pred CCCCcCCCCCcCceEEeccCcccCcccccCcccccCCCceeecCCC-ch---hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017243 1 MKFGNGAYNTMDNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNV-PR---QLLYGTMVYVRQTIVADASCALSRAVCI 76 (375)
Q Consensus 1 ~k~G~~~~~~~dng~i~Fd~vRIP~~~lL~~~~~v~~~G~~~~~~~-~~---~~~~~~l~~~R~~~~~~~~~~~~~al~i 76 (375)
+|+| ++++|||+|.|||||||++||||++++|++||+|+++.+ +. ..++..+..+|+.+++.++|.+++|+++
T Consensus 230 ~k~G---~~g~dng~l~Fd~vrVP~~nlL~~~~~v~~~G~~~~~~~~~~~g~~~~~~~~~~gRl~ia~~a~g~~~~al~i 306 (610)
T cd01150 230 PKMG---LNGVDNGFLQFRNVRIPRENLLNRFGDVSPDGTYVSPFKDPNKRYGAMLGTRSGGRVGLIYDAAMSLKKAATI 306 (610)
T ss_pred cccC---CCCCCeEEEEEeeeEecHHHhcccccccCCCCceecCCCchhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 5889 999999999999999999999999999999999999643 32 1456677889999999999999999999
Q ss_pred HHHhhccccccCCCCCCCCccccccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCChhhHHHHhhhhhH
Q 017243 77 ATRYSAVRRQFGSKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKS 156 (375)
Q Consensus 77 a~rYa~~R~qfg~~~~~~e~~i~~~q~~q~~L~~~la~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~K~ 156 (375)
|++||..|+|||++++++|.||++||++|++|+|++|.+|+++++++++...|......+++++....+++|.++|++|+
T Consensus 307 Ai~Ya~~R~qfg~~~~~~e~~I~~~q~~q~rL~~~la~~~a~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~aa~~K~ 386 (610)
T cd01150 307 AIRYSAVRRQFGPKPSDPEVQILDYQLQQYRLFPQLAAAYAFHFAAKSLVEMYHEIIKELLQGNSELLAELHALSAGLKA 386 (610)
T ss_pred HHHHHHeeeecCCCCCCCcchhhccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCchhhHHHHHHHHHHHH
Confidence 99999999999998788999999999999999999999999999999998888776666666665556789999999999
Q ss_pred HHHHHHHHHHHHHHHHcccccccccCCcccccccccccccccccccchHHHHHHHHHHHHHhhcCCCCcchhhhhcccch
Q 017243 157 LTTTATADGIEECRKLCGGHGYLCSSGLPELFAVYVPACTYEGDNIVLLLQVARFLMKTVSQLGYGNMPVGTTTYMGRAE 236 (375)
Q Consensus 157 ~~t~~~~~~~~~~r~~~GG~G~~~~~~l~~~~~d~~~~~t~EGdn~Vl~~~iar~ll~~~~~~~~~~~~~~~~~~l~~~~ 236 (375)
++||.+.+++++|||+||||||+.+++++++++|+++.+||||||+||++++||++++.|++..+
T Consensus 387 ~~t~~a~~~~~~~rq~~GG~Gy~~~~~l~~l~~d~~~~~t~EG~n~vl~~~iar~ll~~~~~~~~--------------- 451 (610)
T cd01150 387 VATWTAAQGIQECREACGGHGYLAMNRLPTLRDDNDPFCTYEGDNTVLLQQTANYLLKKYAQAFS--------------- 451 (610)
T ss_pred HHHHHHHHHHHHHHHHhcCccchhhcChHHHHhhccceeeeecchHhHHHHHHHHHHHHHhhhcC---------------
Confidence 99999999999999999999999999999999999999999999999999999999998864211
Q ss_pred HHhhhcCCCccccccCCHHHHHHHHHHHHHHHHHHHHHHHhh----ccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017243 237 QLMQCHCGVQKAEDWLNPSAILEAFEARAIRMSVACAQNLSK----FTNQEEGFAELAADLVEAAVAHCQLIVVSKFIEK 312 (375)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~l~~~~~~r~~~l~~~~~~~l~~----~~~~~~~~n~~~~~~~~la~A~~~~~~l~~F~~~ 312 (375)
+++++++|++|+.+++..+++++.+ +++..++||+++++++++|+||++++++++|+++
T Consensus 452 -----------------~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~awN~~~~~l~~~a~Ah~~~~~~~~f~~~ 514 (610)
T cd01150 452 -----------------LADYLEAYEWLAAHLLRHAAAQLEKLKKSGSGSFEARNNSQVHLRCAAKAHTEYTVLQRFHES 514 (610)
T ss_pred -----------------cHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567889999999999998888753 4567799999999999999999999999999999
Q ss_pred HhccCCCCChHHHHHHHHHHHHHHHHHhhhhHHHhcCCCCHHHHHHHHHHHHHHHHhhcccC
Q 017243 313 LQQDIPGKGVKPILEILCHIYALHLVHKHLGDFVSTGCITAKQASLANEQLRSLYSQVFTCV 374 (375)
Q Consensus 313 v~~~~~~~~~~~vL~~L~~LyaL~~I~~~~~~fl~~g~ls~~q~~~l~~~i~~l~~~lrp~~ 374 (375)
|++ ++++++++||++||+||+|+.|++|++||+++|++|++|++.|++.+.+||.+|||++
T Consensus 515 ~~~-~~~~~~~~vL~~L~~Ly~l~~i~~~~g~fl~~~~ls~~~~~~~~~~~~~l~~~lrp~a 575 (610)
T cd01150 515 VEE-IVDPSVRAVLKRLCDLYALWLLEEHIADFLEGGFLGGQDVKAVREALLALLPQLRPDA 575 (610)
T ss_pred HHh-cCChHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 997 7799999999999999999999999999999999999999999999999999999986
No 8
>KOG0140 consensus Medium-chain acyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=100.00 E-value=3.7e-34 Score=258.11 Aligned_cols=182 Identities=20% Similarity=0.291 Sum_probs=165.9
Q ss_pred CCCcCCCCCcCceEEeccCcccCcccccCcccccCCCceeecCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 017243 2 KFGNGAYNTMDNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYS 81 (375)
Q Consensus 2 k~G~~~~~~~dng~i~Fd~vRIP~~~lL~~~~~v~~~G~~~~~~~~~~~~~~~l~~~R~~~~~~~~~~~~~al~ia~rYa 81 (375)
||| +|..|+--|.|+|||||.+|.||.. |. | ++ +.|+++..+|..++++++|.+.++++.+++|+
T Consensus 226 nmG---qr~sdTR~itFEDvrVP~~Nvlg~~------G~----G-Fk-vAm~~fd~tRp~vAa~alG~A~r~ld~a~ky~ 290 (408)
T KOG0140|consen 226 NMG---QRCSDTRGITFEDVRVPKENVLGAP------GA----G-FK-VAMGGFDKTRPNVAAGALGLAQRCLDEATKYA 290 (408)
T ss_pred ccc---ccCCCCceeeeeecccchhccccCC------Cc----c-ce-ehhhhccCCCCchhhhhhHHHHHHHHHHHHHH
Confidence 789 9999999999999999999999963 41 2 67 89999999999999999999999999999999
Q ss_pred ccccccCCCCCCCCccccccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCChhhHHHHhhhhhHHHHHH
Q 017243 82 AVRRQFGSKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTA 161 (375)
Q Consensus 82 ~~R~qfg~~~~~~e~~i~~~q~~q~~L~~~la~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~K~~~t~~ 161 (375)
..|+|||. ||.+||.+|+.|++|....+..|++.+...+ ++|.++ +. ...+|++|.++++.
T Consensus 291 ~eRK~FG~-------~iA~hQ~vqF~LAdMA~~le~aRL~~~~aa~-------evd~~r----~~-sy~aSiAK~fA~D~ 351 (408)
T KOG0140|consen 291 LERKAFGT-------PIANHQAVQFMLADMAINLELARLMTRNAAW-------EVDNGR----RN-SYYASIAKLFATDT 351 (408)
T ss_pred HHHHHhCc-------ChhhhhhHHHHHHHHHHHHHHHHHHHHHHHH-------HhhcCC----cc-hHHHHHHHHHhhhh
Confidence 99999999 9999999999999999999998887665543 345554 22 67799999999999
Q ss_pred HHHHHHHHHHHcccccccccCCcccccccccccccccccccchHHHHHHHHHHHHH
Q 017243 162 TADGIEECRKLCGGHGYLCSSGLPELFAVYVPACTYEGDNIVLLLQVARFLMKTVS 217 (375)
Q Consensus 162 ~~~~~~~~r~~~GG~G~~~~~~l~~~~~d~~~~~t~EGdn~Vl~~~iar~ll~~~~ 217 (375)
+.+++..+.|++||.||..++|++.+.||+++..||||+|+||++.|+|.|+..+.
T Consensus 352 an~~at~AvQifGG~Gfn~eYpVeklmRDaki~QIyEGTsqiqRlvIsR~ll~~~~ 407 (408)
T KOG0140|consen 352 ANQAATNAVQIFGGNGFNKEYPVEKLMRDAKIYQIYEGTSQIQRLVISRSLLQKFA 407 (408)
T ss_pred HHHHHHHHHHhhccCCccccccHHHHHhhhhhhHhhhchHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999998763
No 9
>KOG0139 consensus Short-chain acyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=100.00 E-value=4e-33 Score=255.43 Aligned_cols=168 Identities=19% Similarity=0.215 Sum_probs=156.4
Q ss_pred CCCCcCCCCCcCceEEeccCcccCcccccCcccccCCCceeecCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 017243 1 MKFGNGAYNTMDNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRY 80 (375)
Q Consensus 1 ~k~G~~~~~~~dng~i~Fd~vRIP~~~lL~~~~~v~~~G~~~~~~~~~~~~~~~l~~~R~~~~~~~~~~~~~al~ia~rY 80 (375)
+|+| +|+.++..+.|||||||++++||.+|. | ++ +.+..|+.+|+.+++...|.++.|++.++.|
T Consensus 231 DKLG---mRaSsTcql~fedVrVpks~IlGe~G~----G-------yk-yAm~~Ln~gRIgi~AqmlglaQ~c~d~tI~Y 295 (398)
T KOG0139|consen 231 DKLG---MRASSTCQLHFEDVRVPKSSILGEYGK----G-------YK-YAIEVLNAGRIGIGAQMLGLAQGCFDETIPY 295 (398)
T ss_pred cccc---ccccceeeEEeccccccchhhcccCCc----c-------hH-HHHHhcCccceeehhhhhhhhHhHHHhhhHH
Confidence 5899 999999999999999999999998763 4 66 8999999999999999999999999999999
Q ss_pred hccccccCCCCCCCCccccccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCChhhHHHHhhhhhHHHHH
Q 017243 81 SAVRRQFGSKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTT 160 (375)
Q Consensus 81 a~~R~qfg~~~~~~e~~i~~~q~~q~~L~~~la~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~K~~~t~ 160 (375)
+.+|.|||+ +|+|+|.+|++|+++.++++|.|++..+..++-+ .| .+...+++|+|+++++
T Consensus 296 ~q~R~~FGk-------~l~d~Q~iQhqiA~~~teiEaaRlL~ynaAr~k~-------~G-----~pf~keAAMAKl~ase 356 (398)
T KOG0139|consen 296 AQERLQFGK-------RLLDFQGLQHQIADMATEIEAARLLVYNAARMKD-------QG-----LPFVKEAAMAKLYASE 356 (398)
T ss_pred HHHHHHhcc-------hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------cC-----CchHHHHHHHHHhhhh
Confidence 999999999 9999999999999999999999999877765542 33 3678889999999999
Q ss_pred HHHHHHHHHHHHcccccccccCCccccccccccccccccccc
Q 017243 161 ATADGIEECRKLCGGHGYLCSSGLPELFAVYVPACTYEGDNI 202 (375)
Q Consensus 161 ~~~~~~~~~r~~~GG~G~~~~~~l~~~~~d~~~~~t~EGdn~ 202 (375)
.+..+...|+|++||.||+.++|.+++|||+++..||||++|
T Consensus 357 ~A~~~t~qCiq~lGG~Gyt~d~paek~yRDarI~~IyeGtsn 398 (398)
T KOG0139|consen 357 VATKTTHQCIQWLGGVGYTKDFPAEKFYRDARIGEIYEGTSN 398 (398)
T ss_pred hhhHHHHHHHHHHhcccccccccHHHHhhhceeeeeecCCCC
Confidence 999999999999999999999999999999999999999875
No 10
>KOG0141 consensus Isovaleryl-CoA dehydrogenase [Amino acid transport and metabolism; Lipid transport and metabolism]
Probab=99.97 E-value=7.4e-32 Score=243.45 Aligned_cols=181 Identities=19% Similarity=0.213 Sum_probs=163.0
Q ss_pred CCCCcCCCCCcCceEEeccCcccCcccccCcccccCCCceeecCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 017243 1 MKFGNGAYNTMDNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRY 80 (375)
Q Consensus 1 ~k~G~~~~~~~dng~i~Fd~vRIP~~~lL~~~~~v~~~G~~~~~~~~~~~~~~~l~~~R~~~~~~~~~~~~~al~ia~rY 80 (375)
+||| ++|.|+.++.|+|++||.+|+||+.+ .|.| ++|+.|..+|+.++...+|.++.+++++..|
T Consensus 240 dKlG---mrgsdTcELvFed~~vpas~ilg~en----kGvY--------vlMsgLd~ERLvla~gplglmqa~~d~~~~Y 304 (421)
T KOG0141|consen 240 DKLG---MRGSDTCELVFEDCKVPASNILGEEN----KGVY--------VLMSGLDLERLVLAAGPLGLMQAALDETFPY 304 (421)
T ss_pred Hhhc---CCCCcchheehhhccCcHHHhcCcCC----ceEE--------EEecCCChhHhhhccCchHHHHHHHHHhhhH
Confidence 5899 99999999999999999999999765 4766 5678899999999999999999999999999
Q ss_pred hccccccCCCCCCCCccccccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCChhhHHHHhhhhhHHHHH
Q 017243 81 SAVRRQFGSKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTT 160 (375)
Q Consensus 81 a~~R~qfg~~~~~~e~~i~~~q~~q~~L~~~la~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~K~~~t~ 160 (375)
+++|++||+ +|.+||++|.++++|.+..-+.|.....+.+.. ++++. -...+++.++|++|
T Consensus 305 ~~qR~afgk-------~ig~fQ~~QgklAdmyT~l~a~Rsyvy~va~~~-------d~g~~-----~~kdcag~il~aaE 365 (421)
T KOG0141|consen 305 AHQRKAFGK-------KIGHFQLLQGKLADMYTTLCASRSYVYNVARAC-------DAGNV-----DPKDCAGVILYAAE 365 (421)
T ss_pred HHHHHHhCC-------chhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHh-------hcCCC-----ChhhhhhhhhhHhh
Confidence 999999999 999999999999999998888887765554433 34432 23568999999999
Q ss_pred HHHHHHHHHHHHcccccccccCCcccccccccccccccccccchHHHHHHHHHHH
Q 017243 161 ATADGIEECRKLCGGHGYLCSSGLPELFAVYVPACTYEGDNIVLLLQVARFLMKT 215 (375)
Q Consensus 161 ~~~~~~~~~r~~~GG~G~~~~~~l~~~~~d~~~~~t~EGdn~Vl~~~iar~ll~~ 215 (375)
.+.+++-+|+|++||.||+.++|++++++|++...|+.|+|||.+..|+|.+.+.
T Consensus 366 ~~tqVald~iQ~~GGnGYineyp~gr~lrDAklyeIgaGTsEirr~lIgRel~~e 420 (421)
T KOG0141|consen 366 KATQVALDAIQCLGGNGYINEYPTGRLLRDAKLYEIGAGTSEIRRLLIGRELNKE 420 (421)
T ss_pred hhHHHHHHHHhhccCcccccccchhhhhhhceeeeccCChHHHHHHHHHHHhhcc
Confidence 9999999999999999999999999999999999999999999999999998764
No 11
>PRK09463 fadE acyl-CoA dehydrogenase; Reviewed
Probab=99.95 E-value=1.1e-26 Score=241.82 Aligned_cols=175 Identities=19% Similarity=0.201 Sum_probs=151.1
Q ss_pred CCCcCCCCCcCceEEeccCcccCcccccCcccccCCCceeecCCCchhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHh
Q 017243 2 KFGNGAYNTMDNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVR-QTIVADASCALSRAVCIATRY 80 (375)
Q Consensus 2 k~G~~~~~~~dng~i~Fd~vRIP~~~lL~~~~~v~~~G~~~~~~~~~~~~~~~l~~~R-~~~~~~~~~~~~~al~ia~rY 80 (375)
++| .+ ..||.++||||+||.+|+||+.. ..|. +++ .++..|..+| +.+++.++|.++.|++.+++|
T Consensus 289 ~lG---~r-~~~g~v~fddV~VP~d~lLG~~~---~~G~-----G~~-~l~~~L~~gR~i~laA~avG~ar~al~~Av~Y 355 (777)
T PRK09463 289 PLN---VP-FQNGPTRGKDVFIPLDYIIGGPK---MAGQ-----GWR-MLMECLSVGRGISLPSNSTGGAKLAALATGAY 355 (777)
T ss_pred ccC---cc-cccceEEeeeeecCHHHhccccc---ccCh-----HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567 77 56999999999999999998521 1131 266 7889999999 899999999999999999999
Q ss_pred hccccccCCCCCCCCccccccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCChhhHHHHhhhhhHHHHH
Q 017243 81 SAVRRQFGSKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTT 160 (375)
Q Consensus 81 a~~R~qfg~~~~~~e~~i~~~q~~q~~L~~~la~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~K~~~t~ 160 (375)
++.|+|||. ||.+||.+|++|++|.+.+|+++.+...+... ++.++ .....++++|+++|+
T Consensus 356 A~~R~QFG~-------pIg~fQaVQ~~LAdma~~~~a~eaar~~~a~~-------~D~G~-----~~~~~aA~AK~~atE 416 (777)
T PRK09463 356 ARIRRQFKL-------PIGKFEGIEEPLARIAGNAYLMDAARTLTTAA-------VDLGE-----KPSVLSAIAKYHLTE 416 (777)
T ss_pred HHHHHHcCC-------ChhhcHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HhCCC-----CchHHHHHHHHHHHH
Confidence 999999999 99999999999999999998888775544322 23332 124568999999999
Q ss_pred HHHHHHHHHHHHccccccccc--CCcccccccccccccccccccchHHHH
Q 017243 161 ATADGIEECRKLCGGHGYLCS--SGLPELFAVYVPACTYEGDNIVLLLQV 208 (375)
Q Consensus 161 ~~~~~~~~~r~~~GG~G~~~~--~~l~~~~~d~~~~~t~EGdn~Vl~~~i 208 (375)
.+.+++++|+|+|||.||+.+ ++++++|+|+++..|+||+|++++..+
T Consensus 417 ~a~~va~~AmQIhGG~G~~~~~~~~leR~yRdari~~i~eGtn~i~r~~i 466 (777)
T PRK09463 417 RGRQVINDAMDIHGGKGICLGPNNFLARAYQAAPIAITVEGANILTRSLM 466 (777)
T ss_pred HHHHHHHHHHHHhchhheeCCCCChHHHHHHhCcchheeCcHHHHHHHHH
Confidence 999999999999999999987 899999999999999999999999886
No 12
>PRK11561 isovaleryl CoA dehydrogenase; Provisional
Probab=99.94 E-value=1.8e-26 Score=232.57 Aligned_cols=183 Identities=20% Similarity=0.194 Sum_probs=160.4
Q ss_pred CCCCcCCCCCcCceEEeccCcccCcccccCcccccCCCceeecCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 017243 1 MKFGNGAYNTMDNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRY 80 (375)
Q Consensus 1 ~k~G~~~~~~~dng~i~Fd~vRIP~~~lL~~~~~v~~~G~~~~~~~~~~~~~~~l~~~R~~~~~~~~~~~~~al~ia~rY 80 (375)
+||| .++.++++|.|||| ++++||+.+ .| ++ .++..+..+|+.++..++|.+++|++.|++|
T Consensus 259 ~klG---~r~~~t~ev~f~dv---~~~llG~~g----~G-------~~-~i~~~l~~~Rl~~a~~a~G~a~~Al~~A~~y 320 (538)
T PRK11561 259 DKLG---NRSNASSEVEFQDA---IGWLLGEEG----EG-------IR-LILKMGGMTRFDCALGSHGLMRRAFSVAIYH 320 (538)
T ss_pred cccc---CCCCceeEEEECCH---HHHHCCCCC----ch-------HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4899 99999999999999 488998632 23 55 6777899999999999999999999999999
Q ss_pred hccccccCCCCCCCCccccccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCC-ChhhHHHHhhhhhHHHH
Q 017243 81 SAVRRQFGSKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFS-TLPEAHACTAGLKSLTT 159 (375)
Q Consensus 81 a~~R~qfg~~~~~~e~~i~~~q~~q~~L~~~la~~~a~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~s~~K~~~t 159 (375)
++.|++||. ||+++|.+|++|++|.+.+++.+.+..++.+.++. ++.. .......+++++|++++
T Consensus 321 A~~R~~FG~-------~L~~~q~vq~~LAdm~~~ieaar~l~~~aa~~~d~-------~~~~~~~~~~rl~t~~aK~~~~ 386 (538)
T PRK11561 321 AHQRQVFGK-------PLIEQPLMRQVLSRMALQLEGQTALLFRLARAWDR-------RADAKEALWARLFTPAAKFVIC 386 (538)
T ss_pred HHhCccCCC-------ccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-------CCChHHHHHHHHHHHHHHHHHH
Confidence 999999998 99999999999999999999999998887766642 2110 01124456789999999
Q ss_pred HHHHHHHHHHHHHcccccccccCCcccccccccccccccccccchHHHHHHHHHHH
Q 017243 160 TATADGIEECRKLCGGHGYLCSSGLPELFAVYVPACTYEGDNIVLLLQVARFLMKT 215 (375)
Q Consensus 160 ~~~~~~~~~~r~~~GG~G~~~~~~l~~~~~d~~~~~t~EGdn~Vl~~~iar~ll~~ 215 (375)
+.+.+++.+|+|++||+||+.++++++++||+++..|+||+++|+.+.++|.+.|.
T Consensus 387 e~a~~v~~~Amqv~GG~Gy~ee~~lerl~RDa~v~~I~eGt~~i~~ldv~r~l~~~ 442 (538)
T PRK11561 387 KRGIPFVAEAMEVLGGIGYCEESELPRLYREMPVNSIWEGSGNIMCLDVLRVLNKQ 442 (538)
T ss_pred HHHHHHHHHHHHhcCCccCCCCcHHHHHHHHHhhhhcccCCHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999988763
No 13
>cd01161 VLCAD Very long chain acyl-CoA dehydrogenase. VLCAD is an acyl-CoA dehydrogenase (ACAD), which is found in the mitochondria of eukaryotes and in some bacteria. It catalyzes the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. VLCAD acts as a homodimer.
Probab=99.94 E-value=5.8e-26 Score=224.91 Aligned_cols=183 Identities=21% Similarity=0.244 Sum_probs=160.8
Q ss_pred CCCCcCCCCCcCceEEeccCcccCcccccCcccccCCCceeecCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 017243 1 MKFGNGAYNTMDNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRY 80 (375)
Q Consensus 1 ~k~G~~~~~~~dng~i~Fd~vRIP~~~lL~~~~~v~~~G~~~~~~~~~~~~~~~l~~~R~~~~~~~~~~~~~al~ia~rY 80 (375)
+++| +++.+++.+.||||+||.+++||..+ +| ++ .....+..+|+.+++.++|.++++++.+++|
T Consensus 225 ~~~G---~~g~~s~~v~~~~v~Vp~~~~lg~~g----~g-------~~-~~~~~l~~~r~~~aa~~lG~a~~al~~a~~~ 289 (409)
T cd01161 225 KKMG---IKGSNTAEVYFEDVKIPVENVLGEVG----DG-------FK-VAMNILNNGRFGMGAALIGTMKRCIEKAVDY 289 (409)
T ss_pred cccC---CCCCCceEEEeccEEECHHHcCCCCC----hH-------HH-HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3678 99999999999999999999998532 23 44 5667888999999999999999999999999
Q ss_pred hccccccCCCCCCCCccccccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCChhhHHHHhhhhhHHHHH
Q 017243 81 SAVRRQFGSKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTT 160 (375)
Q Consensus 81 a~~R~qfg~~~~~~e~~i~~~q~~q~~L~~~la~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~K~~~t~ 160 (375)
+..|+|||. ||.++|.+|++|+++.+..++.+.+...+.+.++ .+.. .+....++++|+++++
T Consensus 290 a~~R~~fg~-------~l~~~q~vq~~la~~~~~~~aar~l~~~a~~~~d-------~~~~---~~~~~~~~~aK~~a~~ 352 (409)
T cd01161 290 ANNRKQFGK-------KIHEFGLIQEKLANMAILQYATESMAYMTSGNMD-------RGLK---AEYQIEAAISKVFASE 352 (409)
T ss_pred HHhceeCCc-------cHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------CCCC---cchHHHHHHHHHHHHH
Confidence 999999998 9999999999999999999999888776655442 2210 1345568999999999
Q ss_pred HHHHHHHHHHHHcccccccccCCcccccccccccccccccccchHHHHHHHHHHH
Q 017243 161 ATADGIEECRKLCGGHGYLCSSGLPELFAVYVPACTYEGDNIVLLLQVARFLMKT 215 (375)
Q Consensus 161 ~~~~~~~~~r~~~GG~G~~~~~~l~~~~~d~~~~~t~EGdn~Vl~~~iar~ll~~ 215 (375)
.+.+++++|+++|||.||..++++++++||+++..+++|+|+|++.+|++.+|+.
T Consensus 353 ~a~~v~~~a~~~~Gg~G~~~~~~l~r~~Rd~~~~~~~~G~~~~~~~~ia~~~l~~ 407 (409)
T cd01161 353 AAWLVVDEAIQIHGGMGFMREYGVERVLRDLRIFRIFEGTNEILRLFIALTGLQH 407 (409)
T ss_pred HHHHHHHHHHHHhcCccccCCCcHHHHHHhhhcceeecCHHHHHHHHHHHHHhhh
Confidence 9999999999999999999999999999999999999999999999999988764
No 14
>cd01151 GCD Glutaryl-CoA dehydrogenase. Glutaryl-CoA dehydrogenase (GCD). GCD is an acyl-CoA dehydrogenase, which catalyzes the oxidative decarboxylation of glutaryl-CoA to crotonyl-CoA and carbon dioxide in the catabolism of lysine, hydroxylysine, and tryptophan. It uses electron transfer flavoprotein (ETF) as an electron acceptor. GCD is a homotetramer. GCD deficiency leads to a severe neurological disorder in humans.
Probab=99.94 E-value=4.5e-26 Score=224.06 Aligned_cols=179 Identities=20% Similarity=0.201 Sum_probs=158.0
Q ss_pred CCCCcCCCCCcCceEEeccCcccCcccccCcccccCCCceeecCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 017243 1 MKFGNGAYNTMDNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRY 80 (375)
Q Consensus 1 ~k~G~~~~~~~dng~i~Fd~vRIP~~~lL~~~~~v~~~G~~~~~~~~~~~~~~~l~~~R~~~~~~~~~~~~~al~ia~rY 80 (375)
+++| +++.+++.+.||||+||.+++|++. +| +. ..+..+...|+.+++.++|.++++++.+++|
T Consensus 204 ~~~G---~~g~~s~~v~f~~v~Vp~~~~l~~~-----~g-------~~-~~~~~~~~~r~~~aa~~lG~a~~al~~a~~~ 267 (386)
T cd01151 204 GKFS---LRASITGEIVMDNVFVPEENLLPGA-----EG-------LR-GPFKCLNNARYGIAWGALGAAEDCYHTARQY 267 (386)
T ss_pred CCcC---CCCCceeEEEEccEEeCHHHcCCcc-----cc-------HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3678 9999999999999999999999741 23 33 4566788899999999999999999999999
Q ss_pred hccccccCCCCCCCCccccccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCChhhHHHHhhhhhHHHHH
Q 017243 81 SAVRRQFGSKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTT 160 (375)
Q Consensus 81 a~~R~qfg~~~~~~e~~i~~~q~~q~~L~~~la~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~K~~~t~ 160 (375)
++.|+|||. ||.++|.+|++|+++.+.+++.+.+...+.+.++ .+. .....++++|+++++
T Consensus 268 a~~R~~~g~-------~i~~~q~vq~~la~~~~~~eaar~l~~~a~~~~d-------~~~-----~~~~~~~~~K~~~~~ 328 (386)
T cd01151 268 VLDRKQFGR-------PLAAFQLVQKKLADMLTEIALGLLACLRVGRLKD-------QGK-----ATPEQISLLKRNNCG 328 (386)
T ss_pred HHhCeecCC-------chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------CCC-----CchHHHHHHHHHHHH
Confidence 999999998 9999999999999999999999988777654442 221 123457899999999
Q ss_pred HHHHHHHHHHHHcccccccccCCcccccccccccccccccccchHHHHHHHHHH
Q 017243 161 ATADGIEECRKLCGGHGYLCSSGLPELFAVYVPACTYEGDNIVLLLQVARFLMK 214 (375)
Q Consensus 161 ~~~~~~~~~r~~~GG~G~~~~~~l~~~~~d~~~~~t~EGdn~Vl~~~iar~ll~ 214 (375)
.+.+++++|+|+|||+||+.++++++++||++...+++|+|++++..+++.+++
T Consensus 329 ~a~~~~~~a~~~~Gg~g~~~~~~l~r~~RD~~~~~~~~G~~~~~~~~i~~~~l~ 382 (386)
T cd01151 329 KALEIARTAREMLGGNGISDEYHIIRHMVNLESVNTYEGTHDIHALILGRAITG 382 (386)
T ss_pred HHHHHHHHHHHHhcCCccCCCCHHHHHHHhhhcceecCCHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999999999998875
No 15
>KOG0137 consensus Very-long-chain acyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=99.94 E-value=1.5e-24 Score=211.16 Aligned_cols=182 Identities=23% Similarity=0.297 Sum_probs=162.1
Q ss_pred CCCCcCCCCCcCceEEeccCcccCcccccCcccccCCCceeecCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 017243 1 MKFGNGAYNTMDNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRY 80 (375)
Q Consensus 1 ~k~G~~~~~~~dng~i~Fd~vRIP~~~lL~~~~~v~~~G~~~~~~~~~~~~~~~l~~~R~~~~~~~~~~~~~al~ia~rY 80 (375)
.||| .+|.+++++.|++|+||.+|+||+.| +| ++ +++..++.+|+.+++.+.|.|++++..+..|
T Consensus 279 ~k~G---iKgsnt~~v~f~~~ki~~envlG~~G----~G-------~k-va~nilnsgR~~~aaa~~G~mkr~I~~~~d~ 343 (634)
T KOG0137|consen 279 KKMG---IKGSNTAEVHFEGVKIPIENVLGKPG----DG-------FK-VAMNILNSGRFGMAAALLGLMKRIIEEAADY 343 (634)
T ss_pred hhhc---ccccceeeeeeccccccHHHhcCCCC----cc-------hH-HHHHHHccCCcchhHHHHHHHHHHHHHHHHH
Confidence 4799 99999999999999999999999754 45 66 8999999999999999999999999999999
Q ss_pred hccccccCCCCCCCCccccccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCChhhHHHHhhhhhHHHHH
Q 017243 81 SAVRRQFGSKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTT 160 (375)
Q Consensus 81 a~~R~qfg~~~~~~e~~i~~~q~~q~~L~~~la~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~K~~~t~ 160 (375)
+..|.|||. |+-++-.+|.++..|....|++..+...+... +|+ ....+++.++++.|+|+++
T Consensus 344 ~~~rtQ~g~-------~L~~~~l~q~k~~~m~~~~Ya~ESm~yl~sg~-------~D~---~~a~d~~lEaai~Ki~a~e 406 (634)
T KOG0137|consen 344 ATNRTQFGK-------KLHDFGLIQEKVAEMASKVYATESMLYLLSGL-------MDE---VGAKDVQLEAAILKIFASE 406 (634)
T ss_pred hhcceecCc-------chhhhhhHHHHHHHHHHHHHHHHHHHHHHhcc-------ccc---ccceeeeehHHHHHHHhhh
Confidence 999999999 99999999999999999999988764332211 122 1235688899999999999
Q ss_pred HHHHHHHHHHHHcccccccccCCcccccccccccccccccccchHHHHHHHHHH
Q 017243 161 ATADGIEECRKLCGGHGYLCSSGLPELFAVYVPACTYEGDNIVLLLQVARFLMK 214 (375)
Q Consensus 161 ~~~~~~~~~r~~~GG~G~~~~~~l~~~~~d~~~~~t~EGdn~Vl~~~iar~ll~ 214 (375)
.++.++.+|+|++||+||+.+.++++++||+++++||||+|+|+++.||..-+.
T Consensus 407 ~a~~v~se~iqi~Gg~g~m~d~g~Er~LRD~ri~~I~egtndvLrlfiAltg~q 460 (634)
T KOG0137|consen 407 QAWAVVSEAIQIVGGMGYMRDTGLERLLRDARILRIFEGTNDVLRLFIALTGLQ 460 (634)
T ss_pred HHHHHHHhhhheeccccccccCchHHHhhhhheeeeecCchhHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999875443
No 16
>PRK12341 putative acyl-CoA dehydrogenase; Provisional
Probab=99.94 E-value=3.9e-26 Score=224.09 Aligned_cols=182 Identities=15% Similarity=0.176 Sum_probs=159.4
Q ss_pred CCCCcCCCCCcCceEEeccCcccCcccccCcccccCCCceeecCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 017243 1 MKFGNGAYNTMDNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRY 80 (375)
Q Consensus 1 ~k~G~~~~~~~dng~i~Fd~vRIP~~~lL~~~~~v~~~G~~~~~~~~~~~~~~~l~~~R~~~~~~~~~~~~~al~ia~rY 80 (375)
+++| +++.+++.+.||||+||.+++||..+ +| +. ..+..+..+|+.+++.++|.++++++.+++|
T Consensus 199 ~~~G---~~~~~~~~v~~~~v~Vp~~~~lg~~~----~g-------~~-~~~~~~~~~r~~~aa~~lG~a~~al~~~~~~ 263 (381)
T PRK12341 199 HKIG---WHMLSTCEVYLDNVEVEESDLVGEEG----MG-------FL-NVMYNFEMERLINAARSLGFAECAFEDAARY 263 (381)
T ss_pred cccc---CCCCCceEEEECcEEecHHHcCCCCC----hH-------HH-HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678 99999999999999999999998532 23 44 4556778899999999999999999999999
Q ss_pred hccccccCCCCCCCCccccccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCChhhHHHHhhhhhHHHHH
Q 017243 81 SAVRRQFGSKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTT 160 (375)
Q Consensus 81 a~~R~qfg~~~~~~e~~i~~~q~~q~~L~~~la~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~K~~~t~ 160 (375)
+..|+|||. ||.++|.+|++|+++.+..++.+.+..++.+.. +.+. .....++++|+++++
T Consensus 264 ~~~R~~~g~-------~i~~~~~v~~~la~~~~~~~aar~~~~~a~~~~-------d~~~-----~~~~~~~~aK~~~~~ 324 (381)
T PRK12341 264 ANQRIQFGK-------PIGHNQLIQEKLTLMAIKIENMRNMVYKVAWQA-------DNGQ-----SLRTSAALAKLYCAR 324 (381)
T ss_pred HHhhhCCCc-------cHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hCCC-----CchHHHHHHHHHHHH
Confidence 999999998 999999999999999999999998876654433 2222 123457899999999
Q ss_pred HHHHHHHHHHHHcccccccccCCcccccccccccccccccccchHHHHHHHHHHHH
Q 017243 161 ATADGIEECRKLCGGHGYLCSSGLPELFAVYVPACTYEGDNIVLLLQVARFLMKTV 216 (375)
Q Consensus 161 ~~~~~~~~~r~~~GG~G~~~~~~l~~~~~d~~~~~t~EGdn~Vl~~~iar~ll~~~ 216 (375)
.+.++++.|++++||+||..++++++++||++...++||+++|+..++++.+++.|
T Consensus 325 ~a~~v~~~~~~~~Gg~g~~~~~~l~r~~RD~~~~~~~~g~~~~~~~~i~~~~~~~~ 380 (381)
T PRK12341 325 TAMEVIDDAIQIMGGLGYTDEARVSRFWRDVRCERIGGGTDEIMIYIAGRQILKDY 380 (381)
T ss_pred HHHHHHHHHHHHhcCcccCCCCHHHHHHHHhhcceecCCHHHHHHHHHHHHHHhhc
Confidence 99999999999999999999999999999999999999999999999999998653
No 17
>TIGR03203 pimD_small pimeloyl-CoA dehydrogenase, small subunit. Members of this protein family are the PimD proteins of species such as Rhodopseudomonas palustris, Bradyrhizobium japonicum. The pimFABCDE operon encodes proteins for the metabolism of straight chain dicarboxylates of seven to fourteen carbons. Especially relevant is pimeloyl-CoA, basis of the gene symbol, as it is a catabolite of benzoyl-CoA degradation, which occurs in Rhodopseudomonas palustris.
Probab=99.93 E-value=5.9e-26 Score=222.48 Aligned_cols=172 Identities=16% Similarity=0.156 Sum_probs=150.3
Q ss_pred CcCceEEeccCcccCcccccCcccccCCCceeecCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCC
Q 017243 10 TMDNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGS 89 (375)
Q Consensus 10 ~~dng~i~Fd~vRIP~~~lL~~~~~v~~~G~~~~~~~~~~~~~~~l~~~R~~~~~~~~~~~~~al~ia~rYa~~R~qfg~ 89 (375)
|...+.|.||||+||.+++||..+ +| ++ .+...+..+|+.+++.++|.++++++.+++|++.|+|||.
T Consensus 203 g~~~~~l~fd~v~vp~~~~lg~~~----~g-------~~-~~~~~l~~~r~~~aa~~~G~a~~al~~a~~ya~~R~qFG~ 270 (378)
T TIGR03203 203 GLHAADITFTGVVVGADAAIGDPE----NA-------LP-LIERVVDDARAALCAEAVGLMDESLKTTVEYIKTRKQFGV 270 (378)
T ss_pred CCceeeEEECCCcccHHhhcCCcc----hH-------HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCeecCc
Confidence 445689999999999999998532 23 45 6778889999999999999999999999999999999999
Q ss_pred CCCCCCccccccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCChhhHHHHhhhhhHHHHHHHHHHHHHH
Q 017243 90 KNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEEC 169 (375)
Q Consensus 90 ~~~~~e~~i~~~q~~q~~L~~~la~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~K~~~t~~~~~~~~~~ 169 (375)
||.+||.+|++|++|.+.+++.+.+.....+..+ .++ ..+....++++|+++++.+.+++++|
T Consensus 271 -------pi~~~Q~vq~~lAdm~~~~e~ar~l~~~aa~~~~-------~~~---~~~~~~~~a~aK~~a~e~a~~va~~a 333 (378)
T TIGR03203 271 -------PIGSFQVLQHRAADMFVAVEQARSMAMFATMASD-------FDD---AKERANAIAAAKVQIGKSLKFVGQQS 333 (378)
T ss_pred -------cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-------ccc---cchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999998766644331 111 01234578999999999999999999
Q ss_pred HHHcccccccccCCcccccccccccccccccccchHHHHHH
Q 017243 170 RKLCGGHGYLCSSGLPELFAVYVPACTYEGDNIVLLLQVAR 210 (375)
Q Consensus 170 r~~~GG~G~~~~~~l~~~~~d~~~~~t~EGdn~Vl~~~iar 210 (375)
+|+|||+||+.++++++++||++...+++|++++++..++.
T Consensus 334 iqi~Gg~G~t~e~~~~~~~r~a~~~~~~~G~~~~~~~~~~~ 374 (378)
T TIGR03203 334 IQLHGGIGMTMEAKIGHYFKRLTMIEHTFGDTDFHLSRVSA 374 (378)
T ss_pred HHhccceeecccchHHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999998886
No 18
>PLN02526 acyl-coenzyme A oxidase
Probab=99.93 E-value=7.2e-26 Score=224.34 Aligned_cols=179 Identities=22% Similarity=0.285 Sum_probs=157.1
Q ss_pred CCCcCCCCCcCceEEeccCcccCcccccCcccccCCCceeecCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 017243 2 KFGNGAYNTMDNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYS 81 (375)
Q Consensus 2 k~G~~~~~~~dng~i~Fd~vRIP~~~lL~~~~~v~~~G~~~~~~~~~~~~~~~l~~~R~~~~~~~~~~~~~al~ia~rYa 81 (375)
++| +++.+++.|.||||+||.+++|+.. +| +. .....+..+|+.+++.++|.++++++.+++|+
T Consensus 221 ~~G---~r~t~s~~v~f~~v~Vp~~~~l~~~-----~~-------~~-~~~~~~~~~r~~~aa~~lG~a~~al~~a~~~a 284 (412)
T PLN02526 221 KIG---LRMVQNGDIVLKDVFVPDEDRLPGV-----NS-------FQ-DTNKVLAVSRVMVAWQPIGISMGVYDMCHRYL 284 (412)
T ss_pred ccC---cCCCCeeEEEEeeEEECHHHhCCCc-----cc-------HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678 9999999999999999999999741 22 33 44556788999999999999999999999999
Q ss_pred ccccccCCCCCCCCccccccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCChhhHHHHhhhhhHHHHHH
Q 017243 82 AVRRQFGSKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTA 161 (375)
Q Consensus 82 ~~R~qfg~~~~~~e~~i~~~q~~q~~L~~~la~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~K~~~t~~ 161 (375)
..|+|||. ||.++|.+|++|+++.+..++.+.+..++.+.++ .+.. ....++++|+++++.
T Consensus 285 ~~R~~fg~-------~i~~~q~vq~~la~~~~~l~aar~~~~~aa~~~d-------~~~~-----~~~~~~~aK~~a~~~ 345 (412)
T PLN02526 285 KERKQFGA-------PLAAFQINQEKLVRMLGNIQAMFLVGWRLCKLYE-------SGKM-----TPGHASLGKAWITKK 345 (412)
T ss_pred HhCeeCCC-------chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------CCCC-----ChHHHHHHHHHHHHH
Confidence 99999998 9999999999999999999999988776655442 2221 133478999999999
Q ss_pred HHHHHHHHHHHcccccccccCCcccccccccccccccccccchHHHHHHHHHHH
Q 017243 162 TADGIEECRKLCGGHGYLCSSGLPELFAVYVPACTYEGDNIVLLLQVARFLMKT 215 (375)
Q Consensus 162 ~~~~~~~~r~~~GG~G~~~~~~l~~~~~d~~~~~t~EGdn~Vl~~~iar~ll~~ 215 (375)
+.+++++|+|+|||+||..++++++++||+++..++||+++|+.+.++|.+++.
T Consensus 346 a~~v~~~a~~~~Gg~G~~~~~~l~r~~RD~~~~~~~~G~~ev~~~~i~~~~l~~ 399 (412)
T PLN02526 346 ARETVALGRELLGGNGILADFLVAKAFCDLEPIYTYEGTYDINALVTGREITGI 399 (412)
T ss_pred HHHHHHHHHHHhcCccccCcCHHHHHHhcccceEecCCHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999999999999764
No 19
>PRK03354 crotonobetainyl-CoA dehydrogenase; Validated
Probab=99.93 E-value=6.1e-26 Score=222.67 Aligned_cols=183 Identities=15% Similarity=0.170 Sum_probs=158.7
Q ss_pred CCCCcCCCCCcCceEEeccCcccCcccccCcccccCCCceeecCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 017243 1 MKFGNGAYNTMDNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRY 80 (375)
Q Consensus 1 ~k~G~~~~~~~dng~i~Fd~vRIP~~~lL~~~~~v~~~G~~~~~~~~~~~~~~~l~~~R~~~~~~~~~~~~~al~ia~rY 80 (375)
+++| +++.+++.+.||||+||.++++|+.+ +| +. .....+..+|+.+++.++|.++++++.+++|
T Consensus 198 ~~~G---~r~~~~~~v~f~~v~Vp~~~~lg~~g----~g-------~~-~~~~~~~~~r~~~aa~~~G~a~~al~~a~~~ 262 (380)
T PRK03354 198 EKLG---LRMDSCCEITFDDVELDEKDMFGREG----NG-------FN-RVKEEFDHERFLVALTNYGTAMCAFEDAARY 262 (380)
T ss_pred cccC---CCCCCeEEEEEccEEecHHHcCCCCC----hH-------HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678 99999999999999999999998532 23 33 3445677899999999999999999999999
Q ss_pred hccccccCCCCCCCCccccccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCChhhHHHHhhhhhHHHHH
Q 017243 81 SAVRRQFGSKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTT 160 (375)
Q Consensus 81 a~~R~qfg~~~~~~e~~i~~~q~~q~~L~~~la~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~K~~~t~ 160 (375)
+..|+|||. ||.++|.+|++|+++.+...+.+.+..++.+.+ +.+. .....++++|+++++
T Consensus 263 a~~R~~fg~-------~i~~~q~vq~~la~~~~~~~aar~l~~~aa~~~-------~~~~-----~~~~~~~~aK~~~~~ 323 (380)
T PRK03354 263 ANQRVQFGE-------AIGRFQLIQEKFAHMAIKLNSMKNMLYEAAWKA-------DNGT-----ITSGDAAMCKYFCAN 323 (380)
T ss_pred HHhhhccCc-------cHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hCCC-----cchhHHHHHHHHHHH
Confidence 999999998 999999999999999999999988876664433 2221 112457899999999
Q ss_pred HHHHHHHHHHHHcccccccccCCcccccccccccccccccccchHHHHHHHHHHHHH
Q 017243 161 ATADGIEECRKLCGGHGYLCSSGLPELFAVYVPACTYEGDNIVLLLQVARFLMKTVS 217 (375)
Q Consensus 161 ~~~~~~~~~r~~~GG~G~~~~~~l~~~~~d~~~~~t~EGdn~Vl~~~iar~ll~~~~ 217 (375)
.+.++++.|+++|||+||+.+++++++|||++...+++|+++|++..|+|.+++.|+
T Consensus 324 ~a~~~~~~~~~~~Gg~g~~~~~~l~r~~Rd~~~~~~~~G~~~~~~~~i~~~~~~~~~ 380 (380)
T PRK03354 324 AAFEVVDSAMQVLGGVGIAGNHRISRFWRDLRVDRVSGGSDEMQILTLGRAVLKQYR 380 (380)
T ss_pred HHHHHHHHHHHHhcCceecCCChHHHHHHHhhhhhccCCHHHHHHHHHHHHHHhhcC
Confidence 999999999999999999999999999999999999999999999999999988763
No 20
>cd01162 IBD Isobutyryl-CoA dehydrogenase. Isobutyryl-CoA dehydrogenase (IBD) catalyzes the alpha, beta- dehydrogenation of short branched chain acyl-CoA intermediates in valine catabolism. It is predicted to be a homotetramer.
Probab=99.93 E-value=1e-25 Score=220.74 Aligned_cols=180 Identities=24% Similarity=0.287 Sum_probs=158.5
Q ss_pred CCCcCCCCCcCceEEeccCcccCcccccCcccccCCCceeecCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 017243 2 KFGNGAYNTMDNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYS 81 (375)
Q Consensus 2 k~G~~~~~~~dng~i~Fd~vRIP~~~lL~~~~~v~~~G~~~~~~~~~~~~~~~l~~~R~~~~~~~~~~~~~al~ia~rYa 81 (375)
++| +++..++.+.||||+||.+++|++.+ +| ++ .....+..+|+.+++.++|.++++++.+++|+
T Consensus 195 ~~g---~~~~~~~~l~f~~v~Vp~~~~lg~~~----~g-------~~-~~~~~l~~~r~~~aa~~lG~a~~al~~~~~~a 259 (375)
T cd01162 195 KMG---WNAQPTRAVIFEDCRVPVENRLGGEG----QG-------FG-IAMAGLNGGRLNIASCSLGAAQAALDLARAYL 259 (375)
T ss_pred ccC---CCCCCeeEEEECceEecHHHcCCCCC----ch-------HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567 99999999999999999999998522 23 44 55667888999999999999999999999999
Q ss_pred ccccccCCCCCCCCccccccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCChhhHHHHhhhhhHHHHHH
Q 017243 82 AVRRQFGSKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTA 161 (375)
Q Consensus 82 ~~R~qfg~~~~~~e~~i~~~q~~q~~L~~~la~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~K~~~t~~ 161 (375)
..|+|||. ||.+||.+|++|+++.+..++.+.+...+.+.++ .++ .+....++++|+++++.
T Consensus 260 ~~R~~fg~-------~l~~~~~vq~~la~~~~~l~~a~~~~~~a~~~~~-------~~~----~~~~~~~~~ak~~~~~~ 321 (375)
T cd01162 260 EERKQFGK-------PLADFQALQFKLADMATELVASRLMVRRAASALD-------RGD----PDAVKLCAMAKRFATDE 321 (375)
T ss_pred HhhhccCc-------cHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------CCC----CcchHHHHHHHHHHHHH
Confidence 99999998 9999999999999999999999988776655442 222 12234678999999999
Q ss_pred HHHHHHHHHHHcccccccccCCcccccccccccccccccccchHHHHHHHHHH
Q 017243 162 TADGIEECRKLCGGHGYLCSSGLPELFAVYVPACTYEGDNIVLLLQVARFLMK 214 (375)
Q Consensus 162 ~~~~~~~~r~~~GG~G~~~~~~l~~~~~d~~~~~t~EGdn~Vl~~~iar~ll~ 214 (375)
+.+++++|+++|||.||..++++++++||++...+++|+++|+++++++.+++
T Consensus 322 a~~~~~~~~~~~Gg~g~~~~~~l~r~~Rd~~~~~~~~G~~~~~~~~~~~~~~~ 374 (375)
T cd01162 322 CFDVANQALQLHGGYGYLKDYPVEQYVRDLRVHQILEGTNEIMRLIIARALLT 374 (375)
T ss_pred HHHHHHHHHHHhcccccccCChHHHHHHHhhcceeecCHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999998865
No 21
>PRK13026 acyl-CoA dehydrogenase; Reviewed
Probab=99.93 E-value=1.4e-24 Score=225.44 Aligned_cols=175 Identities=22% Similarity=0.195 Sum_probs=144.8
Q ss_pred CCCcCCCCCcCceEEeccCcccCcccccCcccccCCCceeecCCCchhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHh
Q 017243 2 KFGNGAYNTMDNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVR-QTIVADASCALSRAVCIATRY 80 (375)
Q Consensus 2 k~G~~~~~~~dng~i~Fd~vRIP~~~lL~~~~~v~~~G~~~~~~~~~~~~~~~l~~~R-~~~~~~~~~~~~~al~ia~rY 80 (375)
++| .++ .||.++||||+||.+|+||+.. ..|. +++ .++..|..+| +.+++.++|.++.|++.+++|
T Consensus 288 ~lG---~~~-~~g~v~fdDV~VP~d~lLG~~~---~~G~-----G~~-~l~~~L~~gR~i~laA~a~G~A~~al~~Av~Y 354 (774)
T PRK13026 288 PLG---MAF-MNGTTRGKDVFIPLDWIIGGPD---YAGR-----GWR-MLVECLSAGRGISLPALGTASGHMATRTTGAY 354 (774)
T ss_pred ccc---cCc-ccceEEEeeeEccHHHhcCCcc---cCCh-----HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567 776 4799999999999999998521 1231 266 7889999999 899999999999999999999
Q ss_pred hccccccCCCCCCCCccccccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCChhhHHHHhhhhhHHHHH
Q 017243 81 SAVRRQFGSKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTT 160 (375)
Q Consensus 81 a~~R~qfg~~~~~~e~~i~~~q~~q~~L~~~la~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~K~~~t~ 160 (375)
++.|+|||. ||.+||.+|++|++|.+.+|.+..+...+... ++.+. .....++++|+++|+
T Consensus 355 A~~R~QFG~-------pIg~fQ~Vq~~LAdma~~~y~lEaaR~l~~~a-------~D~G~-----~~~~~aA~AK~~atE 415 (774)
T PRK13026 355 AYVRRQFGM-------PIGQFEGVQEALARIAGNTYLLEAARRLTTTG-------LDLGV-----KPSVVTAIAKYHMTE 415 (774)
T ss_pred HHHHHhcCC-------CccccHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHCCC-----CchHHHHHHHHHHHH
Confidence 999999999 99999999999999998655444432211111 13332 124678999999999
Q ss_pred HHHHHHHHHHHHccccccccc--CCcccccccccccccccccccchHHHH
Q 017243 161 ATADGIEECRKLCGGHGYLCS--SGLPELFAVYVPACTYEGDNIVLLLQV 208 (375)
Q Consensus 161 ~~~~~~~~~r~~~GG~G~~~~--~~l~~~~~d~~~~~t~EGdn~Vl~~~i 208 (375)
.+.+++++|+|+|||.||+.+ ++++++|+|+++..|+||+|++++..+
T Consensus 416 ~a~~va~~AmQIhGG~Gy~~e~~~~ler~yRdari~~i~eGtnei~R~l~ 465 (774)
T PRK13026 416 LARDVVNDAMDIHAGKGIQLGPKNYLGHAYMAVPIAITVEGANILTRNLM 465 (774)
T ss_pred HHHHHHHHHHHhhchheeeCCCCChHHHHHHHhhhhheeCcHHHHHHHHH
Confidence 999999999999999999998 899999999999999999999998743
No 22
>TIGR03207 cyc_hxne_CoA_dh cyclohexanecarboxyl-CoA dehydrogenase. Cyclohex-1-ene-1carboxyl-CoA is an intermediate in the anaerobic degradation of benzoyl-CoA derived from varioius aromatic compounds, in Rhodopseudomonas palustris but not Thauera aromatica. The aliphatic compound cyclohexanecarboxylate, can be converted to the same intermediate in two steps. The first step is its ligation to coenzyme A. The second is the action of this enzyme, cyclohexanecarboxyl-CoA dehydrogenase.
Probab=99.93 E-value=9e-26 Score=220.83 Aligned_cols=174 Identities=20% Similarity=0.215 Sum_probs=153.3
Q ss_pred CCCcCCCCCcCceEEeccCcccCcccccCcccccCCCceeecCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 017243 2 KFGNGAYNTMDNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYS 81 (375)
Q Consensus 2 k~G~~~~~~~dng~i~Fd~vRIP~~~lL~~~~~v~~~G~~~~~~~~~~~~~~~l~~~R~~~~~~~~~~~~~al~ia~rYa 81 (375)
++| +++.+++.+.||||+||.+++|+..+ +| ++ ..+..+...|+.+++.++|.++++++.+++|+
T Consensus 196 ~~G---~r~~~~~~v~f~~v~Vp~~~~lg~~~----~g-------~~-~~~~~l~~~r~~~a~~~~G~a~~al~~a~~~~ 260 (372)
T TIGR03207 196 CHG---QRAIGRGSIFFENVRVPADHMLGNEG----QG-------FV-QVMQGFDFSRALIGLQVLAVARAALDETWRYV 260 (372)
T ss_pred hcc---CCCCCeeEEEECceeccHHHcCCCCC----hh-------HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567 89999999999999999999998522 23 44 56677889999999999999999999999999
Q ss_pred ccccccCCCCCCCCccccccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCChhhHHHHhhhhhHHHHHH
Q 017243 82 AVRRQFGSKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTA 161 (375)
Q Consensus 82 ~~R~qfg~~~~~~e~~i~~~q~~q~~L~~~la~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~K~~~t~~ 161 (375)
..|+|||. ||.+||.+|++|++|.+.+++.+.+..++.+.++ .+. +....++++|+++++.
T Consensus 261 ~~R~~fg~-------~i~~~q~v~~~la~~~~~~~~ar~l~~~aa~~~~-------~~~-----~~~~~~~~aK~~~~~~ 321 (372)
T TIGR03207 261 AERQAFGK-------PLSAFQGVSHPLADAETQVEAARLLCLQTLWLKD-------HGL-----PHTSEAAMCKWWAPKL 321 (372)
T ss_pred HhccccCC-------chhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHh-------CCC-----CchHHHHHHHHHHHHH
Confidence 99999999 9999999999999999999999998776654432 221 1134578999999999
Q ss_pred HHHHHHHHHHHcccccccccCCcccccccccccccccccccchHHHHHH
Q 017243 162 TADGIEECRKLCGGHGYLCSSGLPELFAVYVPACTYEGDNIVLLLQVAR 210 (375)
Q Consensus 162 ~~~~~~~~r~~~GG~G~~~~~~l~~~~~d~~~~~t~EGdn~Vl~~~iar 210 (375)
+.++++.|+|++||.||..+ +++++|||++..+|+||+|+||+.+|++
T Consensus 322 a~~v~~~a~~v~Gg~g~~~~-~l~r~~rd~~~~~i~~Gt~~~~~~~i~~ 369 (372)
T TIGR03207 322 AYDVIHQCLLTHGHGGYDRG-DMEQRLRDVLGFQIGDGTAQIMKTIIAR 369 (372)
T ss_pred HHHHHHHHHHHhcCCcCCCc-hHHHHHhHhhheeecCCHHHHHHHHHhh
Confidence 99999999999999999999 9999999999999999999999999987
No 23
>cd01155 ACAD_FadE2 Acyl-CoA dehydrogenases similar to fadE2. FadE2-like Acyl-CoA dehydrogenase (ACAD). Acyl-CoA dehydrogenases (ACAD) catalyze the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. The ACAD family includes the eukaryotic beta-oxidation, as well as amino acid catabolism enzymes. These enzymes share high sequence similarity, but differ in their substrate specificities. ACAD's are generally homotetramers and have an active site glutamate at a conserved position.
Probab=99.93 E-value=1.4e-25 Score=221.16 Aligned_cols=182 Identities=17% Similarity=0.193 Sum_probs=157.4
Q ss_pred CCCCcCCCCC--cCceEEeccCcccCcccccCcccccCCCceeecCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017243 1 MKFGNGAYNT--MDNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIAT 78 (375)
Q Consensus 1 ~k~G~~~~~~--~dng~i~Fd~vRIP~~~lL~~~~~v~~~G~~~~~~~~~~~~~~~l~~~R~~~~~~~~~~~~~al~ia~ 78 (375)
+++| +++ ..++.|.||||+||.+++|+..+ .| +. .....+..+|+..++.++|.++++++.++
T Consensus 211 ~~~G---~r~~~t~s~~v~f~dv~Vp~~~~lg~~~----~g-------~~-~~~~~~~~~r~~~~a~~lG~a~~al~~~~ 275 (394)
T cd01155 211 SVFG---YDDAPHGHAEITFDNVRVPASNLILGEG----RG-------FE-IAQGRLGPGRIHHCMRLIGAAERALELMC 275 (394)
T ss_pred cccC---CCCCCCCeeEEEEccEEecHHHcCCCCC----hH-------HH-HHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 3678 887 45789999999999999998532 23 44 56777888999999999999999999999
Q ss_pred HhhccccccCCCCCCCCccccccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCChhhHHHHhhhhhHHH
Q 017243 79 RYSAVRRQFGSKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLT 158 (375)
Q Consensus 79 rYa~~R~qfg~~~~~~e~~i~~~q~~q~~L~~~la~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~K~~~ 158 (375)
+|++.|+|||. ||.++|.+|++|+++.+.+++.+.+...+.+.++ .+.. .+.+..++++|+++
T Consensus 276 ~~~~~R~~fg~-------~i~~~q~vq~~la~~~~~l~aar~l~~~aa~~~~-------~~~~---~~~~~~~~~aK~~~ 338 (394)
T cd01155 276 QRAVSREAFGK-------KLAQHGVVAHWIAKSRIEIEQARLLVLKAAHMID-------TVGN---KAARKEIAMIKVAA 338 (394)
T ss_pred HHHhcCccCCC-------cHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------CCCC---cchhHHHHHHHHHH
Confidence 99999999998 9999999999999999999999988776655442 2110 12346689999999
Q ss_pred HHHHHHHHHHHHHHcccccccccCCcccccccccccccccccccchHHHHHHHHHH
Q 017243 159 TTATADGIEECRKLCGGHGYLCSSGLPELFAVYVPACTYEGDNIVLLLQVARFLMK 214 (375)
Q Consensus 159 t~~~~~~~~~~r~~~GG~G~~~~~~l~~~~~d~~~~~t~EGdn~Vl~~~iar~ll~ 214 (375)
++.+.+++++|+++|||+||+.++++++++||+++..+++|+++|++.++++.++|
T Consensus 339 ~~~a~~~~~~a~~~~Gg~g~~~~~~l~r~~Rda~~~~i~~Gt~~~~~~~ia~~~~~ 394 (394)
T cd01155 339 PRMALKIIDRAIQVHGAAGVSQDTPLANMYAWARTLRIADGPDEVHLRSIARMELK 394 (394)
T ss_pred HHHHHHHHHHHHHHhcCceecCCCHHHHHHHHHhhceeecCHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999998753
No 24
>PF01756 ACOX: Acyl-CoA oxidase; InterPro: IPR002655 Acyl-CoA oxidase (ACO) acts on CoA derivatives of fatty acids with chain lengths from 8 to 18. It catalyses the first and rate-determining step of the peroxisomal beta-oxidation of fatty acids []. Acyl-CoA oxidase is a homodimer and the polypeptide chain of the subunit is folded into the N-terminal alpha-domain, beta-domain, and C-terminal alpha-domain []. Functional differences between the peroxisomal acyl-CoA oxidases and the mitochondrial acyl-CoA dehydrogenases are attributed to structural differences in the FAD environments []. Experimental data indicate that, in the pumpkin, the expression pattern of ACOX is very similar to that of the glyoxysomal enzyme 3-ketoacyl-CoA thiolase []. In humans, defects in ACOX1 are the cause of pseudoneonatal adrenoleukodystrophy, also known as peroxisomal acyl-CoA oxidase deficiency. Pseudo-NALD is a peroxisomal single-enzyme disorder. Clinical features include mental retardation, leukodystrophy, seizures, mild hepatomegaly and hearing deficit. Pseudo-NALD is characterised by increased plasma levels of very-long chain fatty acids due to a decrease in, or absence of, peroxisome acyl-CoA oxidase activity, despite the peroxisomes being intact and functioning. This entry represents the Acyl-CoA oxidase C-terminal.; GO: 0003997 acyl-CoA oxidase activity, 0006635 fatty acid beta-oxidation, 0055114 oxidation-reduction process, 0005777 peroxisome; PDB: 2FON_A 1IS2_B 2DDH_A 1W07_B.
Probab=99.93 E-value=3.8e-25 Score=195.77 Aligned_cols=125 Identities=30% Similarity=0.528 Sum_probs=117.0
Q ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHhh----ccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCChHHH
Q 017243 250 DWLNPSAILEAFEARAIRMSVACAQNLSK----FTNQEEGFAELAADLVEAAVAHCQLIVVSKFIEKLQQDIPGKGVKPI 325 (375)
Q Consensus 250 ~~~~~~~l~~~~~~r~~~l~~~~~~~l~~----~~~~~~~~n~~~~~~~~la~A~~~~~~l~~F~~~v~~~~~~~~~~~v 325 (375)
||.||++++++|++|+++++..+++++++ |++.+++||+++.+++++|+||+++++++.|++.|+..+.++++++|
T Consensus 1 d~~~~~~l~~a~~~r~~~ll~~~~~~l~~~~~~g~~~~~awn~~~~~l~~~a~Ah~e~~i~~~f~~~i~~~~~~~~~~~v 80 (187)
T PF01756_consen 1 DLLDPEFLLQAFEHRAARLLQRAAQKLQKLMKSGKSPFEAWNDCSVQLVRAAKAHAERYILEQFIEAIQSSCADPEVRQV 80 (187)
T ss_dssp GGGSHHHHHHHHHHHHHHHHHHHHHHHCTSHHHHSSHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHTTSG-SSTTHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCChHHHHH
Confidence 57899999999999999999999999854 67789999999999999999999999999999999922889999999
Q ss_pred HHHHHHHHHHHHHHhhhhHHHhcCCCCHHHHHHHHHHHHHHHHhhcccC
Q 017243 326 LEILCHIYALHLVHKHLGDFVSTGCITAKQASLANEQLRSLYSQVFTCV 374 (375)
Q Consensus 326 L~~L~~LyaL~~I~~~~~~fl~~g~ls~~q~~~l~~~i~~l~~~lrp~~ 374 (375)
|.+||+||+|++|++++|||+++||+|++|++.|++.+.+||.+|||++
T Consensus 81 L~~L~~Lyal~~i~~~~g~fl~~g~ls~~~~~~l~~~i~~l~~~lrp~a 129 (187)
T PF01756_consen 81 LRQLCQLYALSIIEENAGDFLEHGYLSPEQIKALRKAIEELCAELRPNA 129 (187)
T ss_dssp HHHHHHHHHHHHHHHTHHHHHHTTSS-HHHHHHHHHHHHHHHHHHGGGH
T ss_pred HHHHHHHHhHHHHHHHHHHHHhCCcCCHHHHHHHHHHHHHHHHHHHhHH
Confidence 9999999999999999999999999999999999999999999999986
No 25
>PTZ00461 isovaleryl-CoA dehydrogenase; Provisional
Probab=99.93 E-value=1.7e-25 Score=221.61 Aligned_cols=180 Identities=18% Similarity=0.174 Sum_probs=157.8
Q ss_pred CCCcCCCCCcCceEEeccCcccCcccccCcccccCCCceeecCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 017243 2 KFGNGAYNTMDNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYS 81 (375)
Q Consensus 2 k~G~~~~~~~dng~i~Fd~vRIP~~~lL~~~~~v~~~G~~~~~~~~~~~~~~~l~~~R~~~~~~~~~~~~~al~ia~rYa 81 (375)
++| +++.+++.+.||||+||.+++|++.+ +| +. ..+..+..+|+.+++.++|.++++++++++|+
T Consensus 229 ~~G---~r~~~~~~l~f~~v~Vp~~~~lg~~g----~g-------~~-~~~~~~~~~r~~~aa~~~G~a~~al~~a~~ya 293 (410)
T PTZ00461 229 KCG---MRASHMCQLFFEDVVVPAENLLGEEG----KG-------MV-GMMRNLELERVTLAAMAVGIAERSVELMTSYA 293 (410)
T ss_pred ccC---CCCCceEEEEEcceecCHHHhCCCCC----cc-------HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577 99999999999999999999998632 23 34 55677889999999999999999999999999
Q ss_pred ccccccCCCCCCCCccccccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCChhhHHHHhhhhhHHHHHH
Q 017243 82 AVRRQFGSKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTA 161 (375)
Q Consensus 82 ~~R~qfg~~~~~~e~~i~~~q~~q~~L~~~la~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~K~~~t~~ 161 (375)
..|+|||. ||.++|.+|++|+++.+.+++.+.+...+.+.+ +.++ +....++++|+++++.
T Consensus 294 ~~R~~fg~-------~i~~~q~vq~~la~~~~~l~aar~l~~~aa~~~-------~~~~-----~~~~~~~~aK~~a~~~ 354 (410)
T PTZ00461 294 SERKAFGK-------PISNFGQIQRYIAEGYADTEAAKALVYSVSHNV-------HPGN-----KNRLGSDAAKLFATPI 354 (410)
T ss_pred HhCeecCc-------CHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------cCCC-----cchHHHHHHHHHHHHH
Confidence 99999998 999999999999999999999988876654433 2221 1224567899999999
Q ss_pred HHHHHHHHHHHcccccccccCCcccccccccccccccccccchHHHHHHHHHHH
Q 017243 162 TADGIEECRKLCGGHGYLCSSGLPELFAVYVPACTYEGDNIVLLLQVARFLMKT 215 (375)
Q Consensus 162 ~~~~~~~~r~~~GG~G~~~~~~l~~~~~d~~~~~t~EGdn~Vl~~~iar~ll~~ 215 (375)
+.++++.|+|+|||+||..++++++++||++...+++|++++++..+++.+++.
T Consensus 355 a~~v~~~a~qv~Gg~G~~~~~~l~r~~Rda~~~~i~~Gt~e~~~~~i~~~~~~~ 408 (410)
T PTZ00461 355 AKKVADSAIQVMGGMGYSRDMPVERLWRDAKLLEIGGGTIEAHHKNITKDLLKG 408 (410)
T ss_pred HHHHHHHHHHHhcCcccCCCCHHHHHHHHHhhheeccCHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999999999999988764
No 26
>cd01157 MCAD Medium chain acyl-CoA dehydrogenase. MCADs are mitochondrial beta-oxidation enzymes, which catalyze the alpha,beta dehydrogenation of the corresponding medium chain acyl-CoA by FAD, which becomes reduced. The reduced form of MCAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. MCAD is a homotetramer.
Probab=99.93 E-value=1.6e-25 Score=219.57 Aligned_cols=179 Identities=19% Similarity=0.277 Sum_probs=156.6
Q ss_pred CCCcCCCCCcCceEEeccCcccCcccccCcccccCCCceeecCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 017243 2 KFGNGAYNTMDNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYS 81 (375)
Q Consensus 2 k~G~~~~~~~dng~i~Fd~vRIP~~~lL~~~~~v~~~G~~~~~~~~~~~~~~~l~~~R~~~~~~~~~~~~~al~ia~rYa 81 (375)
++| +++.+++.+.||||+||.+++|++.+ +| ++ .....+...|+.+++.++|.++++++.+++|+
T Consensus 199 ~~G---~~~~~s~~~~~~~v~Vp~~~~lg~~~----~g-------~~-~~~~~~~~~r~~~aa~~lG~a~~~l~~~~~~~ 263 (378)
T cd01157 199 NMG---QRCSDTRGITFEDVRVPKENVLIGEG----AG-------FK-IAMGAFDKTRPPVAAGAVGLAQRALDEATKYA 263 (378)
T ss_pred ccC---CCCCCceEEEeccEEECHHHcCCCCC----ch-------HH-HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578 99999999999999999999998522 23 44 56677888999999999999999999999999
Q ss_pred ccccccCCCCCCCCccccccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCChhhHHHHhhhhhHHHHHH
Q 017243 82 AVRRQFGSKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTA 161 (375)
Q Consensus 82 ~~R~qfg~~~~~~e~~i~~~q~~q~~L~~~la~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~K~~~t~~ 161 (375)
+.|+|||. ||.+||.+|++|+++.+.+++.+.+.....+.+ +.+. .....++++|+++++.
T Consensus 264 ~~R~~fg~-------~i~~~q~vq~~la~~~~~~~aar~~~~~aa~~~-------d~~~-----~~~~~~~~aK~~~~~~ 324 (378)
T cd01157 264 LERKTFGK-------LIAEHQAVSFMLADMAMKVELARLAYQRAAWEV-------DSGR-----RNTYYASIAKAFAADI 324 (378)
T ss_pred HhccccCc-------cHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hCCC-----CchHHHHHHHHHHHHH
Confidence 99999998 999999999999999999999888876665433 2221 1233568999999999
Q ss_pred HHHHHHHHHHHcccccccccCCcccccccccccccccccccchHHHHHHHHHH
Q 017243 162 TADGIEECRKLCGGHGYLCSSGLPELFAVYVPACTYEGDNIVLLLQVARFLMK 214 (375)
Q Consensus 162 ~~~~~~~~r~~~GG~G~~~~~~l~~~~~d~~~~~t~EGdn~Vl~~~iar~ll~ 214 (375)
+.++++.|+++|||.||+.+++++++|||++...+++|++++++..|++.++.
T Consensus 325 a~~~~~~a~~~~Gg~g~~~~~~l~r~~Rd~~~~~~~~G~~~~~~~~i~~~~~~ 377 (378)
T cd01157 325 ANQLATDAVQIFGGNGFNSEYPVEKLMRDAKIYQIYEGTSQIQRLIISREHLG 377 (378)
T ss_pred HHHHHHHHHHHhCCCccCCCCHHHHHHHHHhhceecCCHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999998763
No 27
>COG1960 CaiA Acyl-CoA dehydrogenases [Lipid metabolism]
Probab=99.93 E-value=2.6e-25 Score=219.07 Aligned_cols=178 Identities=26% Similarity=0.280 Sum_probs=160.1
Q ss_pred CCCcCceEEeccCcccCcccccCcccccCCCceeecCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccc
Q 017243 8 YNTMDNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQF 87 (375)
Q Consensus 8 ~~~~dng~i~Fd~vRIP~~~lL~~~~~v~~~G~~~~~~~~~~~~~~~l~~~R~~~~~~~~~~~~~al~ia~rYa~~R~qf 87 (375)
+++.+++++.|||||||.++++|+.+ +| +. ..+..|..+|+.+++.++|.++.|++.+++|++.|+||
T Consensus 213 ~r~~~~~~v~f~~v~vp~~~lig~~~----~g-------~~-~~~~~l~~~r~~~aa~~~G~a~~al~~~~~ya~~R~~f 280 (393)
T COG1960 213 LRGSATGEVFFDDVRVPAENLLGEEG----DG-------FK-IAMETLNVERLGIAAQALGIAEAALEEAVAYARERKQF 280 (393)
T ss_pred cCCCCeeEEEECCeeccHHHcCCcCC----ch-------HH-HHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHhHhc
Confidence 99999999999999999999998421 23 55 77889999999999999999999999999999999999
Q ss_pred CCCCCCCCccccccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCChhhHHHHhhhhhHHHHHHHHHHHH
Q 017243 88 GSKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIE 167 (375)
Q Consensus 88 g~~~~~~e~~i~~~q~~q~~L~~~la~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~K~~~t~~~~~~~~ 167 (375)
|. ||.+||.+|++|+++.+.+++.+.+..+..+..+ .+. +....++++|.++++.+.++++
T Consensus 281 g~-------~i~~~~~vq~~la~~~~~~~a~r~~~~~aa~~~~-------~~~-----~~~~~~~~aK~~a~~~~~~~~~ 341 (393)
T COG1960 281 GR-------PIADFQLVQFKLADMAAELEAARLLVLRAAELAD-------AGD-----DAGAEAAMAKLFATEAALEVAD 341 (393)
T ss_pred CC-------chhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------cCC-----CcHHHHHHHHHHHHHHHHHHHH
Confidence 97 9999999999999999999999998777554432 221 2227789999999999999999
Q ss_pred HHHHHcccccccccCCcccccccccccccccccccchHHHHHHHHHHHH
Q 017243 168 ECRKLCGGHGYLCSSGLPELFAVYVPACTYEGDNIVLLLQVARFLMKTV 216 (375)
Q Consensus 168 ~~r~~~GG~G~~~~~~l~~~~~d~~~~~t~EGdn~Vl~~~iar~ll~~~ 216 (375)
.|+|+|||.||+.+.+++++++|++...+++|+++|++..+++.+++..
T Consensus 342 ~a~q~~Gg~g~~~e~~i~r~~rda~~~~i~~Gt~~i~~~~i~~~~~~~~ 390 (393)
T COG1960 342 EAVQVHGGYGYTEEYPVERYYRDARILRIYEGTSEIQRLIIARRLLGLP 390 (393)
T ss_pred HHHHHhcCCccccCchHHHHHHHhHhheeccCHHHHHHHHHHHHHhhhc
Confidence 9999999999999999999999999999999999999999999988764
No 28
>cd01160 LCAD Long chain acyl-CoA dehydrogenase. LCAD is an acyl-CoA dehydrogenases (ACAD), which is found in the mitochondria of eukaryotes and in some prokaryotes. It catalyzes the alpha, beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of LCAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. LCAD acts as a homodimer.
Probab=99.93 E-value=2.7e-25 Score=217.34 Aligned_cols=177 Identities=20% Similarity=0.268 Sum_probs=155.2
Q ss_pred CCCcCCCCCcCceEEeccCcccCcccccCcccccCCCceeecCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 017243 2 KFGNGAYNTMDNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYS 81 (375)
Q Consensus 2 k~G~~~~~~~dng~i~Fd~vRIP~~~lL~~~~~v~~~G~~~~~~~~~~~~~~~l~~~R~~~~~~~~~~~~~al~ia~rYa 81 (375)
++| +++.+++.|.|+||+||.+++||..+ +| +. .....+..+|+.+++.++|.++++++.+++|+
T Consensus 195 ~~G---~~~~~~~~v~~~~v~Vp~~~~lg~~~----~g-------~~-~~~~~~~~~~~~~aa~~lG~a~~al~~a~~~a 259 (372)
T cd01160 195 KMG---WKAQDTAELFFDDCRVPAENLLGEEN----KG-------FY-YLMQNLPQERLLIAAGALAAAEFMLEETRNYV 259 (372)
T ss_pred ccc---CCCCCeEEEEecceEccHHHcCCCCC----ch-------HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577 99999999999999999999998532 23 44 55667888999999999999999999999999
Q ss_pred ccccccCCCCCCCCccccccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCChhhHHHHhhhhhHHHHHH
Q 017243 82 AVRRQFGSKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTA 161 (375)
Q Consensus 82 ~~R~qfg~~~~~~e~~i~~~q~~q~~L~~~la~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~K~~~t~~ 161 (375)
+.|+|||. ||.+||.+|++|+++.+..++++.+...+.+.+ +.++. ....++++|+++++.
T Consensus 260 ~~R~~~g~-------~i~~~q~vq~~la~~~~~~~~a~~~~~~aa~~~-------~~~~~-----~~~~~~~aK~~~~~~ 320 (372)
T cd01160 260 KQRKAFGK-------TLAQLQVVRHKIAELATKVAVTRAFLDNCAWRH-------EQGRL-----DVAEASMAKYWATEL 320 (372)
T ss_pred HhhhccCc-------cHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hCCCC-----chHHHHHHHHHHHHH
Confidence 99999998 999999999999999999999988876654433 22221 234578999999999
Q ss_pred HHHHHHHHHHHcccccccccCCcccccccccccccccccccchHHHHHHHH
Q 017243 162 TADGIEECRKLCGGHGYLCSSGLPELFAVYVPACTYEGDNIVLLLQVARFL 212 (375)
Q Consensus 162 ~~~~~~~~r~~~GG~G~~~~~~l~~~~~d~~~~~t~EGdn~Vl~~~iar~l 212 (375)
+.++++.|+++|||.||+.++++++++||+++..+++|+|+|++.+|++.+
T Consensus 321 a~~v~~~a~~~~Gg~g~~~~~~l~r~~Rd~~~~~~~~gt~~~~~~~i~~~~ 371 (372)
T cd01160 321 QNRVAYECVQLHGGWGYMREYPIARAYRDARVQPIYGGTTEIMKELISRQM 371 (372)
T ss_pred HHHHHHHHHHHhcCceecCCCHHHHHHHHhhcccccCCHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999999999999865
No 29
>cd01154 AidB Proteins involved in DNA damage response, similar to the AidB gene product. AidB is one of several genes involved in the SOS adaptive response to DNA alkylation damage, whose expression is activated by the Ada protein. Its function has not been entirely elucidated; however, it is similar in sequence and function to acyl-CoA dehydrogenases. It has been proposed that aidB directly destroys DNA alkylating agents such as nitrosoguanidines (nitrosated amides) or their reaction intermediates.
Probab=99.93 E-value=6.8e-25 Score=217.67 Aligned_cols=184 Identities=20% Similarity=0.218 Sum_probs=156.8
Q ss_pred CCCCcCCCCCcCceEEeccCcccCcccccCcccccCCCceeecCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 017243 1 MKFGNGAYNTMDNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRY 80 (375)
Q Consensus 1 ~k~G~~~~~~~dng~i~Fd~vRIP~~~lL~~~~~v~~~G~~~~~~~~~~~~~~~l~~~R~~~~~~~~~~~~~al~ia~rY 80 (375)
+|+| +++.++++|.||||+ +++||..+ +| ++ ..+..+..+|+.+++.++|.++++++.+++|
T Consensus 234 ~~~G---~r~~~~~ev~f~dv~---~~~lG~~g----~G-------~~-~~~~~l~~~R~~~aa~~~G~a~~al~~a~~y 295 (418)
T cd01154 234 DKLG---TRSVATGEVEFDDAE---AYLIGDEG----KG-------IY-YILEMLNISRLDNAVAALGIMRRALSEAYHY 295 (418)
T ss_pred cccC---CCCCCeEEEEecCcC---ccccCCCC----cc-------HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4788 999999999999994 88998532 24 55 6778899999999999999999999999999
Q ss_pred hccccccCCCCCCCCccccccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCChhhHHHHhhhhhHHHHH
Q 017243 81 SAVRRQFGSKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTT 160 (375)
Q Consensus 81 a~~R~qfg~~~~~~e~~i~~~q~~q~~L~~~la~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~K~~~t~ 160 (375)
+..|++||. ||.++|.+|++|+++.+..++.+.+..++...++.. ..++..........++++|+++++
T Consensus 296 a~~R~~fg~-------~l~~~~~v~~~La~~~~~~eaar~l~~~aa~~~~~~----~~~~~~~~~~~r~~~~~aK~~~~e 364 (418)
T cd01154 296 ARHRRAFGK-------PLIDHPLMRRDLAEMEVDVEAATALTFRAARAFDRA----AADKPVEAHMARLATPVAKLIACK 364 (418)
T ss_pred HhcCcCCCC-------chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc----ccCChhHHHHHHHHHHHHHHHHHH
Confidence 999999998 999999999999999999999999887776554321 011100001123468899999999
Q ss_pred HHHHHHHHHHHHcccccccccCCcccccccccccccccccccchHHHHHHHHH
Q 017243 161 ATADGIEECRKLCGGHGYLCSSGLPELFAVYVPACTYEGDNIVLLLQVARFLM 213 (375)
Q Consensus 161 ~~~~~~~~~r~~~GG~G~~~~~~l~~~~~d~~~~~t~EGdn~Vl~~~iar~ll 213 (375)
.+.+++++|+|+|||+||+.++++++++||+++..|+||+++||.+.++|.|.
T Consensus 365 ~a~~v~~~a~~i~Gg~G~~~~~~l~r~~RDa~~~~i~~Gt~~i~~~~~~r~~~ 417 (418)
T cd01154 365 RAAPVTSEAMEVFGGNGYLEEWPVARLHREAQVTPIWEGTGNIQALDVLRVLV 417 (418)
T ss_pred HHHHHHHHHHHHhcCcEEcCCChHHHHHhcCcCcceeccHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999774
No 30
>PLN02519 isovaleryl-CoA dehydrogenase
Probab=99.92 E-value=1.8e-24 Score=213.84 Aligned_cols=181 Identities=17% Similarity=0.174 Sum_probs=158.1
Q ss_pred CCCCcCCCCCcCceEEeccCcccCcccccCcccccCCCceeecCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 017243 1 MKFGNGAYNTMDNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRY 80 (375)
Q Consensus 1 ~k~G~~~~~~~dng~i~Fd~vRIP~~~lL~~~~~v~~~G~~~~~~~~~~~~~~~l~~~R~~~~~~~~~~~~~al~ia~rY 80 (375)
+++| +++.+++.+.||||+||.+++|++.+ +| +. .....+..+|+.+++.++|.++++++.+++|
T Consensus 223 ~~~G---~rgt~s~~v~f~~v~Vp~~~~lg~~~----~G-------~~-~~~~~~~~~r~~~aa~~lG~a~~al~~a~~~ 287 (404)
T PLN02519 223 DKLG---MRGSDTCELVFENCFVPEENVLGQEG----KG-------VY-VMMSGLDLERLVLAAGPLGLMQACLDVVLPY 287 (404)
T ss_pred cccC---CCCCCeeEEEeCeEEecHHHcCCCCC----cc-------HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3678 99999999999999999999998532 34 33 4566778899999999999999999999999
Q ss_pred hccccccCCCCCCCCccccccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCChhhHHHHhhhhhHHHHH
Q 017243 81 SAVRRQFGSKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTT 160 (375)
Q Consensus 81 a~~R~qfg~~~~~~e~~i~~~q~~q~~L~~~la~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~K~~~t~ 160 (375)
+..|.|||. ||.++|.+|++|+++.+.+++++.+...+...++ .+.. ....++.+|+++++
T Consensus 288 a~~R~~~g~-------pl~~~~~v~~~la~~~~~l~aar~~~~~aa~~~~-------~~~~-----~~~~~~~ak~~~~~ 348 (404)
T PLN02519 288 VRQREQFGR-------PIGEFQFIQGKLADMYTSLQSSRSYVYSVARDCD-------NGKV-----DRKDCAGVILCAAE 348 (404)
T ss_pred HHhceeCCc-------cHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------CCCC-----cHHHHHHHHHHHHH
Confidence 999999998 9999999999999999999999998777654432 2211 12346779999999
Q ss_pred HHHHHHHHHHHHcccccccccCCcccccccccccccccccccchHHHHHHHHHHH
Q 017243 161 ATADGIEECRKLCGGHGYLCSSGLPELFAVYVPACTYEGDNIVLLLQVARFLMKT 215 (375)
Q Consensus 161 ~~~~~~~~~r~~~GG~G~~~~~~l~~~~~d~~~~~t~EGdn~Vl~~~iar~ll~~ 215 (375)
.+.++++.|+++|||+||+.++++++++||++...+++|+++|++..+++.++|.
T Consensus 349 ~a~~~~~~a~~i~Gg~g~~~~~~l~r~~RD~~~~~~~~G~~e~~~~~i~~~~~~~ 403 (404)
T PLN02519 349 RATQVALQAIQCLGGNGYINEYPTGRLLRDAKLYEIGAGTSEIRRMLIGRELFKE 403 (404)
T ss_pred HHHHHHHHHHHHhCCceecCCChHHHHHHhhhcceeeCCHHHHHHHHHHHHHhhc
Confidence 9999999999999999999999999999999999999999999999999988763
No 31
>PTZ00456 acyl-CoA dehydrogenase; Provisional
Probab=99.92 E-value=2.6e-24 Score=221.31 Aligned_cols=192 Identities=21% Similarity=0.240 Sum_probs=158.7
Q ss_pred CCCCcCCCCCcCceEEeccCcccCcccccCcccccCCCceeecCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 017243 1 MKFGNGAYNTMDNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRY 80 (375)
Q Consensus 1 ~k~G~~~~~~~dng~i~Fd~vRIP~~~lL~~~~~v~~~G~~~~~~~~~~~~~~~l~~~R~~~~~~~~~~~~~al~ia~rY 80 (375)
+||| +++.+++.|.||| |.+++||+.+ +| ++ .++..|+.+|+.+++.++|.+++|++.|++|
T Consensus 278 ~kmG---~~gs~t~~l~fd~---~~~~llG~~~----~G-------l~-~~~~~mn~aRl~vaa~~lG~a~~Al~~Al~Y 339 (622)
T PTZ00456 278 KKMG---IKGSSTCQLSFEN---SVGYLIGEPN----AG-------MK-QMFTFMNTARVGTALEGVCHAELAFQNALRY 339 (622)
T ss_pred cccC---CCCCceEEEEeeC---hhHhhcCCCC----hH-------HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4789 9999999999999 5789998532 23 55 6788899999999999999999999999999
Q ss_pred hccccccCCCCC-----CCCccccccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCC----hhhHHHHh
Q 017243 81 SAVRRQFGSKNG-----GPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFST----LPEAHACT 151 (375)
Q Consensus 81 a~~R~qfg~~~~-----~~e~~i~~~q~~q~~L~~~la~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~ 151 (375)
++.|+||++..+ ....||++||.+|++|+.+.+.+++.+.+..+.....+... ...+... ......++
T Consensus 340 Ak~R~Qfr~~~~~~~~~~~~~~I~~~~~Vr~~L~~~~a~~eaaral~~~aA~~~D~~~---~~~~~~~~~~~~~~~~~~t 416 (622)
T PTZ00456 340 ARERRSMRALSGTKEPEKPADRIICHANVRQNILFAKAVAEGGRALLLDVGRLLDIHA---AAKDAATREALDHEIGFYT 416 (622)
T ss_pred HHhcccCccccccccccCCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc---cccchhhHhhhhhhhhHHH
Confidence 999999854311 23569999999999999999999999998877765553210 0011100 01245678
Q ss_pred hhhhHHHHHHHHHHHHHHHHHcccccccccCCcccccccccccccccccccchHH-HHHHHHH
Q 017243 152 AGLKSLTTTATADGIEECRKLCGGHGYLCSSGLPELFAVYVPACTYEGDNIVLLL-QVARFLM 213 (375)
Q Consensus 152 s~~K~~~t~~~~~~~~~~r~~~GG~G~~~~~~l~~~~~d~~~~~t~EGdn~Vl~~-~iar~ll 213 (375)
+++|+++|+.+.+++++|+|+|||+||+.++++++++||+++..|+||+|+|+.+ .|+|.++
T Consensus 417 ~iaK~~~te~a~~va~~aiQv~GG~Gy~~e~~ler~~RDari~~i~eGt~~iq~~dli~rkll 479 (622)
T PTZ00456 417 PIAKGCLTEWGVEAASRCLQVWGGHGYIKGNGMEQILRDARIGTLYEGTTGIQALDFIGRKVL 479 (622)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCccCCchHHHHHHHhhcccccCChHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999999999999999974 8888776
No 32
>PLN02876 acyl-CoA dehydrogenase
Probab=99.91 E-value=4.3e-24 Score=228.07 Aligned_cols=182 Identities=16% Similarity=0.169 Sum_probs=158.5
Q ss_pred CCCcCCCCCc--CceEEeccCcccCcccccCcccccCCCceeecCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017243 2 KFGNGAYNTM--DNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATR 79 (375)
Q Consensus 2 k~G~~~~~~~--dng~i~Fd~vRIP~~~lL~~~~~v~~~G~~~~~~~~~~~~~~~l~~~R~~~~~~~~~~~~~al~ia~r 79 (375)
++| +++. .++.|.||||+||.+|+|+..+ +| +. .....+..+|+.+++.++|.+++|++.+++
T Consensus 636 ~~G---~r~~~~~~~~v~fd~V~Vp~~~~lg~~g----~g-------~~-~~~~~l~~~r~~~aa~~vG~a~~ale~a~~ 700 (822)
T PLN02876 636 VFG---FDDAPHGHAEISFENVRVPAKNILLGEG----RG-------FE-IAQGRLGPGRLHHCMRLIGAAERGMQLMVQ 700 (822)
T ss_pred eec---cCCCCCCeeEEEEcceeechhheecCCC----ch-------HH-HHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 567 8874 4789999999999999997522 23 44 567778899999999999999999999999
Q ss_pred hhccccccCCCCCCCCccccccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCChhhHHHHhhhhhHHHH
Q 017243 80 YSAVRRQFGSKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTT 159 (375)
Q Consensus 80 Ya~~R~qfg~~~~~~e~~i~~~q~~q~~L~~~la~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~K~~~t 159 (375)
|+..|+|||. ||.++|.+|++|++|.+.+++.+.+...+...++ .... .+....++++|++++
T Consensus 701 ya~~R~~fg~-------~i~~~q~vq~~la~~~~~leaar~l~~~aa~~~d-------~~~~---~~~~~~~a~aK~~a~ 763 (822)
T PLN02876 701 RALSRKAFGK-------LIAQHGSFLSDLAKCRVELEQTRLLVLEAADQLD-------RLGN---KKARGIIAMAKVAAP 763 (822)
T ss_pred HHHhhhhcCC-------chhhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------ccCC---cchhHHHHHHHHHHH
Confidence 9999999998 9999999999999999999999988777655442 2110 123456899999999
Q ss_pred HHHHHHHHHHHHHcccccccccCCcccccccccccccccccccchHHHHHHHHHHH
Q 017243 160 TATADGIEECRKLCGGHGYLCSSGLPELFAVYVPACTYEGDNIVLLLQVARFLMKT 215 (375)
Q Consensus 160 ~~~~~~~~~~r~~~GG~G~~~~~~l~~~~~d~~~~~t~EGdn~Vl~~~iar~ll~~ 215 (375)
+.+.+++++|+|+|||+||+.+++++++|||++...+++|+++|++..||+.+++.
T Consensus 764 e~a~~va~~a~qv~Gg~G~~~e~~l~r~~Rdar~~~i~~Gt~e~~~~~ia~~~~~~ 819 (822)
T PLN02876 764 NMALKVLDMAMQVHGAAGVSSDTVLAHLWATARTLRIADGPDEVHLGTIAKLELQR 819 (822)
T ss_pred HHHHHHHHHHHHhcCCCccCCcchHHHHHHhhhhcccccChHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999775
No 33
>cd01156 IVD Isovaleryl-CoA dehydrogenase. Isovaleryl-CoA dehydrogenase (IVD) is an is an acyl-CoA dehydrogenase, which catalyzes the third step in leucine catabolism, the conversion of isovaleryl-CoA (3-methylbutyryl-CoA) into 3-methylcrotonyl-CoA. IVD is a homotetramer and has the greatest affinity for small branched chain substrates.
Probab=99.91 E-value=3.8e-24 Score=209.53 Aligned_cols=179 Identities=18% Similarity=0.232 Sum_probs=157.4
Q ss_pred CCCcCCCCCcCceEEeccCcccCcccccCcccccCCCceeecCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 017243 2 KFGNGAYNTMDNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYS 81 (375)
Q Consensus 2 k~G~~~~~~~dng~i~Fd~vRIP~~~lL~~~~~v~~~G~~~~~~~~~~~~~~~l~~~R~~~~~~~~~~~~~al~ia~rYa 81 (375)
++| +++.+.+.+.||||+||.+++|+..+ +| +. ..+..+..+|+.+++.++|.++++++.+++|+
T Consensus 198 ~~G---~~~~~~~~v~~~~v~Vp~~~~lg~~~----~g-------~~-~~~~~~~~~r~~~aa~~lG~a~~al~~~~~~~ 262 (376)
T cd01156 198 KLG---MRGSNTCELVFEDCEVPEENILGGEN----KG-------VY-VLMSGLDYERLVLAGGPIGIMQAALDVAIPYA 262 (376)
T ss_pred ccc---CCCCCceEEEeCceEecHHHcCCCCC----ch-------HH-HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578 99999999999999999999998532 23 44 56778889999999999999999999999999
Q ss_pred ccccccCCCCCCCCccccccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCChhhHHHHhhhhhHHHHHH
Q 017243 82 AVRRQFGSKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTA 161 (375)
Q Consensus 82 ~~R~qfg~~~~~~e~~i~~~q~~q~~L~~~la~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~K~~~t~~ 161 (375)
..|+|||. ||.+||.+|++|+++.+..++.+.+..++.+.+ +.+.. ....++.+|+++++.
T Consensus 263 ~~R~~~g~-------~i~~~~~v~~~la~~~~~l~aar~~~~~aa~~~-------d~~~~-----~~~~~~~~k~~~~~~ 323 (376)
T cd01156 263 HQRKQFGQ-------PIGEFQLVQGKLADMYTRLNASRSYLYTVAKAC-------DRGNM-----DPKDAAGVILYAAEK 323 (376)
T ss_pred HHhHhcCc-------chHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hCCCC-----CHHHHHHHHHHHHHH
Confidence 99999998 999999999999999999999998877765443 22221 123467899999999
Q ss_pred HHHHHHHHHHHcccccccccCCcccccccccccccccccccchHHHHHHHHHH
Q 017243 162 TADGIEECRKLCGGHGYLCSSGLPELFAVYVPACTYEGDNIVLLLQVARFLMK 214 (375)
Q Consensus 162 ~~~~~~~~r~~~GG~G~~~~~~l~~~~~d~~~~~t~EGdn~Vl~~~iar~ll~ 214 (375)
+.++++.|+++|||.||+.++++++++||++...+++|++++++..|++.++|
T Consensus 324 a~~~~~~a~~~~Gg~g~~~~~~l~r~~Rda~~~~~~~gt~~~~~~~i~~~~~~ 376 (376)
T cd01156 324 ATQVALDAIQILGGNGYINDYPTGRLLRDAKLYEIGAGTSEIRRMVIGRELFK 376 (376)
T ss_pred HHHHHHHHHHHhcCcccccCCHHHHHHHHhhcceecCCHHHHHHHHHHHHhhC
Confidence 99999999999999999999999999999999999999999999999998764
No 34
>cd01158 SCAD_SBCAD Short chain acyl-CoA dehydrogenases and eukaryotic short/branched chain acyl-CoA dehydrogenases. Short chain acyl-CoA dehydrogenase (SCAD). SCAD is a mitochondrial beta-oxidation enzyme. It catalyzes the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of SCAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. This subgroup also contains the eukaryotic short/branched chain acyl-CoA dehydrogenase(SBCAD), the bacterial butyryl-CoA dehydorgenase(BCAD) and 2-methylbutyryl-CoA dehydrogenase, which is involved in isoleucine catabolism. These enzymes are homotetramers.
Probab=99.91 E-value=8.7e-24 Score=206.72 Aligned_cols=179 Identities=23% Similarity=0.275 Sum_probs=157.3
Q ss_pred CCCcCCCCCcCceEEeccCcccCcccccCcccccCCCceeecCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 017243 2 KFGNGAYNTMDNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYS 81 (375)
Q Consensus 2 k~G~~~~~~~dng~i~Fd~vRIP~~~lL~~~~~v~~~G~~~~~~~~~~~~~~~l~~~R~~~~~~~~~~~~~al~ia~rYa 81 (375)
++| +++.+++.+.||||+||.+++|+..+ +| +. ..+..+..+|+.+++.++|.++++++++++|+
T Consensus 195 ~~G---~~g~~s~~v~~~~v~Vp~~~~lg~~~----~g-------~~-~~~~~~~~~r~~~~a~~lG~a~~~l~~~~~~~ 259 (373)
T cd01158 195 KLG---IRGSSTTELIFEDVRVPKENILGEEG----EG-------FK-IAMQTLDGGRIGIAAQALGIAQAALDAAVDYA 259 (373)
T ss_pred ccc---cCCCCceEEEeCcEEecHHHcCCCCC----ch-------HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577 99999999999999999999998532 23 33 45667888999999999999999999999999
Q ss_pred ccccccCCCCCCCCccccccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCChhhHHHHhhhhhHHHHHH
Q 017243 82 AVRRQFGSKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTA 161 (375)
Q Consensus 82 ~~R~qfg~~~~~~e~~i~~~q~~q~~L~~~la~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~K~~~t~~ 161 (375)
..|+|||. |+.++|.+|++++++.+..++.+.+...+.... +.+. +....++.+|+++++.
T Consensus 260 ~~R~~~g~-------~~~~~~~v~~~la~~~~~l~aa~~~~~~aa~~~-------~~~~-----~~~~~~~~~k~~~~~~ 320 (373)
T cd01158 260 KERKQFGK-------PIADFQGIQFKLADMATEIEAARLLTYKAARLK-------DNGE-----PFIKEAAMAKLFASEV 320 (373)
T ss_pred HhCcccCC-------cHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hCCC-----CcHHHHHHHHHHHHHH
Confidence 99999998 999999999999999999999888876654433 2221 2345678999999999
Q ss_pred HHHHHHHHHHHcccccccccCCcccccccccccccccccccchHHHHHHHHHH
Q 017243 162 TADGIEECRKLCGGHGYLCSSGLPELFAVYVPACTYEGDNIVLLLQVARFLMK 214 (375)
Q Consensus 162 ~~~~~~~~r~~~GG~G~~~~~~l~~~~~d~~~~~t~EGdn~Vl~~~iar~ll~ 214 (375)
+.++++.|++++||.||..++++++++||++...+++|+|+++..++++.++|
T Consensus 321 a~~~~~~~~~~~G~~g~~~~~~l~r~~rd~~~~~~~~g~~~~~~~~i~~~~~~ 373 (373)
T cd01158 321 AMRVTTDAVQIFGGYGYTKDYPVERYYRDAKITEIYEGTSEIQRLVIAKHLLK 373 (373)
T ss_pred HHHHHHHHHHhhcCccCCCCChHHHHHHHhhhccccCCHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999876
No 35
>PF00441 Acyl-CoA_dh_1: Acyl-CoA dehydrogenase, C-terminal domain; InterPro: IPR006090 Mammalian Co-A dehydrogenases (1.3.99.3 from EC) are enzymes that catalyse the first step in each cycle of beta-oxidation in mitochondion. Acyl-CoA dehydrogenases [, , ] catalyze the alpha,beta-dehydrogenation of acyl-CoA thioesters to the corresponding trans 2,3-enoyl CoA-products with concommitant reduction of enzyme-bound FAD. Reoxidation of the flavin involves transfer of electrons to ETF (electron transfering flavoprotein). These enzymes are homodimers containing one molecule of FAD. The monomeric enzyme is folded into three domains of approximately equal size. The N-terminal and the C-terminal are mainly alpha-helices packed together, and the middle domain consists of two orthogonal beta-sheets. The flavin ring is buried in the crevise between two alpha-helical domains and the beta-sheet of one subunit, and the adenosine pyrophosphate moiety is stretched into the subunit junction with one formed by two C-terminal domains []. The C-terminal domain of Acyl-CoA dehydrogenase is an all-alpha, four helical up-and-down bundle.; GO: 0016627 oxidoreductase activity, acting on the CH-CH group of donors, 0055114 oxidation-reduction process; PDB: 2EBA_A 1RX0_C 1R2J_A 2OKU_A 3MKH_C 2JIF_C 3GQT_D 3EON_D 3EOM_C 3D6B_A ....
Probab=99.90 E-value=4.5e-23 Score=175.46 Aligned_cols=147 Identities=27% Similarity=0.216 Sum_probs=135.8
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCCCCCccccccHHHHHhhHHHHHHHHHHHHHHHHHH
Q 017243 47 PRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLK 126 (375)
Q Consensus 47 ~~~~~~~~l~~~R~~~~~~~~~~~~~al~ia~rYa~~R~qfg~~~~~~e~~i~~~q~~q~~L~~~la~~~a~~~~~~~~~ 126 (375)
++ ++...|..+|+.++..+.|.++.+++.+++|+..|++||. |+.++|.+|++|+++.+..++++.+..++.
T Consensus 4 ~~-~~~~~l~~~R~~~~~~~~g~~~~~l~~a~~~~~~r~~~g~-------~l~~~~~v~~~la~~~~~~~a~~~~~~~~~ 75 (150)
T PF00441_consen 4 WA-VALDTLNHERLMIAAMALGIARRALDEAIEYARRRRQFGK-------PLAEHPAVRRRLADMAARLEAMRALVYRAA 75 (150)
T ss_dssp HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTEETTE-------EGGGSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccC-------cccchhhhHHHHHhhccchhhhhccccccc
Confidence 66 7888999999999999999999999999999999999998 999999999999999999999999988876
Q ss_pred HHHHHHHHHhccCCCCChhhHHHHhhhhhHHHHHHHHHHHHHHHHHcccccccccCCcccccccccccccccccccchHH
Q 017243 127 WLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLCSSGLPELFAVYVPACTYEGDNIVLLL 206 (375)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~K~~~t~~~~~~~~~~r~~~GG~G~~~~~~l~~~~~d~~~~~t~EGdn~Vl~~ 206 (375)
...+ .+. .....++++|+++|+.+.+++++|+++|||.||..+++++++++|++...|+||+|+|++.
T Consensus 76 ~~~~-------~~~-----~~~~~~a~~K~~~t~~~~~~~~~~~~l~G~~g~~~~~~l~~~~rda~~~~i~~G~~ev~~~ 143 (150)
T PF00441_consen 76 RRLD-------AGQ-----NDPVEAAIAKYFATELAQDIAEEAMQLLGGRGLTEDNPLERLYRDARAFTIYGGTNEVQRN 143 (150)
T ss_dssp HHHH-------TTS-----STHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGGBTTSSHHHHHHHHHHGGTSTSTHHHHHH
T ss_pred cccc-------ccc-----ccccccchhhhhcccccccchhhhhhhhhhhhhcccCHHHHHHhhcceeeeccCCHHHHHH
Confidence 6543 222 1267789999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHH
Q 017243 207 QVARFLM 213 (375)
Q Consensus 207 ~iar~ll 213 (375)
+|||.+|
T Consensus 144 ~ia~~~l 150 (150)
T PF00441_consen 144 QIARRLL 150 (150)
T ss_dssp HHHHHHH
T ss_pred HHHHHhC
Confidence 9999886
No 36
>cd00567 ACAD Acyl-CoA dehydrogenase. Both mitochondrial acyl-CoA dehydrogenases (ACAD) and peroxisomal acyl-CoA oxidases (AXO) catalyze the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. In contrast, AXO catalyzes a different oxidative half-reaction, in which the reduced FAD is reoxidized by molecular oxygen. The ACAD family includes the eukaryotic beta-oxidation enzymes, short (SCAD), medium (MCAD), long (LCAD) and very-long (VLCAD) chain acyl-CoA dehydrogenases. These enzymes all share high sequence similarity, but differ in their substrate specificities. The ACAD family also includes amino acid catabolism enzymes such as Isovaleryl-CoA dehydrogenase (IVD), short/branched chain acyl-CoA dehydrogenases(SBCAD), Isob
Probab=99.90 E-value=5e-23 Score=197.56 Aligned_cols=176 Identities=26% Similarity=0.295 Sum_probs=153.9
Q ss_pred CCCcCCCCCcCceEEeccCcccCcccccCcccccCCCceeecCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 017243 2 KFGNGAYNTMDNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYS 81 (375)
Q Consensus 2 k~G~~~~~~~dng~i~Fd~vRIP~~~lL~~~~~v~~~G~~~~~~~~~~~~~~~l~~~R~~~~~~~~~~~~~al~ia~rYa 81 (375)
++| +++.+++.+.||||+||.+++|+..+ +| +. .....+...|+.+++.++|.++++++.+++|+
T Consensus 152 ~~G---~~~~~~~~v~~~~v~Vp~~~~l~~~~----~g-------~~-~~~~~~~~~~~~~aa~~~G~a~~al~~~~~~~ 216 (327)
T cd00567 152 KMG---MRGSGTGELVFDDVRVPEDNLLGEEG----GG-------FE-LAMKGLNVGRLLLAAVALGAARAALDEAVEYA 216 (327)
T ss_pred ccc---CCCCceEEEEECCEEecHHHcCCCCC----ch-------HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467 99999999999999999999997531 23 33 45667788999999999999999999999999
Q ss_pred ccccccCCCCCCCCccccccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCChhhHHHHhhhhhHHHHHH
Q 017243 82 AVRRQFGSKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTA 161 (375)
Q Consensus 82 ~~R~qfg~~~~~~e~~i~~~q~~q~~L~~~la~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~K~~~t~~ 161 (375)
..|+|||. ||.++|.+|++|+++.+..++++.+...+.+.++ .+. ...+..++++|+++++.
T Consensus 217 ~~r~~~g~-------~~~~~~~vq~~la~~~~~~~~~~~~~~~a~~~~~-------~~~----~~~~~~~~~~k~~~~~~ 278 (327)
T cd00567 217 KQRKQFGK-------PLAEFQAVQFKLADMAAELEAARLLLYRAAWLLD-------QGP----DEARLEAAMAKLFATEA 278 (327)
T ss_pred HhccccCC-------ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------CCC----CcchHHHHHHHHHHHHH
Confidence 99999998 9999999999999999999999988777655442 221 12456788999999999
Q ss_pred HHHHHHHHHHHcccccccccCCcccccccccccccccccccchHHHHHH
Q 017243 162 TADGIEECRKLCGGHGYLCSSGLPELFAVYVPACTYEGDNIVLLLQVAR 210 (375)
Q Consensus 162 ~~~~~~~~r~~~GG~G~~~~~~l~~~~~d~~~~~t~EGdn~Vl~~~iar 210 (375)
+.++++.|+++|||+||..++++++++||+....+++|+++++..++++
T Consensus 279 a~~~~~~~~~~~Gg~g~~~~~~l~r~~rd~~~~~~~~G~~~~~~~~~~~ 327 (327)
T cd00567 279 AREVADLAMQIHGGRGYSREYPVERYLRDARAARIAEGTAEIQRLIIAR 327 (327)
T ss_pred HHHHHHHHHHHccCccccCCCHHHHHHHhhhcceeecCHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999988764
No 37
>TIGR03204 pimC_large pimeloyl-CoA dehydrogenase, large subunit. Members of this protein family are the PimC proteins of species such as Rhodopseudomonas palustris and Bradyrhizobium japonicum. The pimFABCDE operon encodes proteins for the metabolism of straight chain dicarboxylates of seven to fourteen carbons. Especially relevant is pimeloyl-CoA, basis of the gene symbol, as it is a catabolite of benzoyl-CoA degradation, which occurs in Rhodopseudomonas palustris.
Probab=99.89 E-value=7.6e-23 Score=201.68 Aligned_cols=173 Identities=12% Similarity=0.059 Sum_probs=144.6
Q ss_pred CcCceEEeccCcccCcccccCcccccCCCceeecCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCC
Q 017243 10 TMDNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGS 89 (375)
Q Consensus 10 ~~dng~i~Fd~vRIP~~~lL~~~~~v~~~G~~~~~~~~~~~~~~~l~~~R~~~~~~~~~~~~~al~ia~rYa~~R~qfg~ 89 (375)
+.+.+.|.||||+||.+++||..+ .| +. ..+..+..+|+.+++ +|.++++++.+++|++.|+|||.
T Consensus 207 ~~~~~~v~f~~v~Vp~~~~lg~~~----~g-------~~-~~~~~l~~~r~g~aa--~g~a~~~l~~a~~ya~~R~~fg~ 272 (395)
T TIGR03204 207 GVEVNEVFFDDVEVPYENLVGEEN----KG-------WD-YAKFLLGNERTGIAR--VGVSKERIRRIKDLAAKVESGGK 272 (395)
T ss_pred CCceeEEEEcceEEcHHHcCCCCC----ch-------HH-HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhhcCC
Confidence 567899999999999999998521 23 55 667778889988875 68899999999999999999999
Q ss_pred CCCCCCccccccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCChhhHHHHhhhhhHHHHHHHHHHHHHH
Q 017243 90 KNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEEC 169 (375)
Q Consensus 90 ~~~~~e~~i~~~q~~q~~L~~~la~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~K~~~t~~~~~~~~~~ 169 (375)
||.+||.+|++|++|.+..++.+.+..++.... .+.++. ..+..++++|.++++.+.+++++|
T Consensus 273 -------~i~~~q~vq~~la~~~~~~~aar~l~~~aa~~~------~~~~~~----~~~~~aa~aK~~~~~~~~~~~~~a 335 (395)
T TIGR03204 273 -------PVIEDAKFREKLAAVEIELKALELTQLRVVADE------GKHGKG----KPNPASSVLKIKGSEIQQATTELL 335 (395)
T ss_pred -------ccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HhcCCC----CCcHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999998877664211 011111 113468999999999999999999
Q ss_pred HHH----------ccccccccc----CCcccccccccccccccccccchHHHHHHHHH
Q 017243 170 RKL----------CGGHGYLCS----SGLPELFAVYVPACTYEGDNIVLLLQVARFLM 213 (375)
Q Consensus 170 r~~----------~GG~G~~~~----~~l~~~~~d~~~~~t~EGdn~Vl~~~iar~ll 213 (375)
+|+ |||+||+.+ ++++++|+|.+...|++|+++|++..|+|.++
T Consensus 336 ~q~~g~~~~~~~~~Gg~G~~~~~~~~~~~~~~~r~~~~~~i~~Gt~ei~~~~ia~~~l 393 (395)
T TIGR03204 336 MEVIGPFAAPYDVHGDDGSNEAMDWTAQIAPSYFNNRKVSIYGGSNEIQRNIIAKAVL 393 (395)
T ss_pred HHhcCcccccccccccccccccchhhhHHHHHHHhccccceeccHHHHHHHHHHHHHc
Confidence 985 778899865 46999999999999999999999999999875
No 38
>cd01153 ACAD_fadE5 Putative acyl-CoA dehydrogenases similar to fadE5. Putative acyl-CoA dehydrogenase (ACAD). Mitochondrial acyl-CoA dehydrogenases (ACAD) catalyze the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. The ACD family includes the eukaryotic beta-oxidation, as well as amino acid catabolism enzymes. These enzymes share high sequence similarity, but differ in their substrate specificities. The mitochondrial ACD's are generally homotetramers and have an active site glutamate at a conserved position.
Probab=99.89 E-value=2.3e-22 Score=199.06 Aligned_cols=186 Identities=17% Similarity=0.171 Sum_probs=151.0
Q ss_pred CCCCcCCCCCcCceEEeccCcccCcccccCcccccCCCceeecCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 017243 1 MKFGNGAYNTMDNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRY 80 (375)
Q Consensus 1 ~k~G~~~~~~~dng~i~Fd~vRIP~~~lL~~~~~v~~~G~~~~~~~~~~~~~~~l~~~R~~~~~~~~~~~~~al~ia~rY 80 (375)
+++| +++.+++.|.||||+|| +|++.+ .| ++ ..+..+..+|+.+++.++|.++++++.+++|
T Consensus 209 ~~~G---~r~t~s~~v~f~~v~Vp---~lg~~~----~g-------~~-~~~~~l~~~r~~~aa~~lG~a~~al~~a~~~ 270 (407)
T cd01153 209 EKMG---LHGSPTCELVFDNAKGE---LIGEEG----MG-------LA-QMFAMMNGARLGVGTQGTGLAEAAYLNALAY 270 (407)
T ss_pred hccC---CCCCCeEEEEEcCEEEe---eeCCCC----cc-------HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3678 99999999999999999 776421 23 44 6678888999999999999999999999999
Q ss_pred hccccccCCC-CCCCCccccccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCh-----hhHHHHhhhh
Q 017243 81 SAVRRQFGSK-NGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTL-----PEAHACTAGL 154 (375)
Q Consensus 81 a~~R~qfg~~-~~~~e~~i~~~q~~q~~L~~~la~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~s~~ 154 (375)
+..|+|||.+ ...+..++.++|.+|++|+++.+.+++.+.+..+..+.+++... ..+.... ......++++
T Consensus 271 a~~R~~fg~~i~~~~~~~~~~~~~iq~~la~~~a~~~a~~~~~~~aa~~~d~~~~---~~~~~~~~~~~~~~~~~~~~~a 347 (407)
T cd01153 271 AKERKQGGDLIKAAPAVTIIHHPDVRRSLMTQKAYAEGSRALDLYTATVQDLAER---KATEGEDRKALSALADLLTPVV 347 (407)
T ss_pred HHhCeecCCcCccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc---ccchhhhhhhhHHHHHHHHHHH
Confidence 9999999983 12223348999999999999999999999988776665532100 0000000 0124557899
Q ss_pred hHHHHHHHHHHHHHHHHHcccccccccCCcccccccccccccccccccchHHH
Q 017243 155 KSLTTTATADGIEECRKLCGGHGYLCSSGLPELFAVYVPACTYEGDNIVLLLQ 207 (375)
Q Consensus 155 K~~~t~~~~~~~~~~r~~~GG~G~~~~~~l~~~~~d~~~~~t~EGdn~Vl~~~ 207 (375)
|+++++.+.+++++|+++|||+||..++++++++||+++..++||+|+|++..
T Consensus 348 K~~~~~~a~~v~~~a~~~~Gg~g~~~~~~l~r~~Rd~~~~~~~~Gt~~~~~~~ 400 (407)
T cd01153 348 KGFGSEAALEAVSDAIQVHGGSGYTREYPIEQYYRDARITTIYEGTTGIQALD 400 (407)
T ss_pred HHHHHHHHHHHHHHHHHHhcCceecCCCcHHHHHHhhhhheeecChHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999874
No 39
>cd01159 NcnH Naphthocyclinone hydroxylase. Naphthocyclinone is an aromatic polyketide and an antibiotic, which is active against Gram-positive bacteria. Polyketides are secondary metabolites, which have important biological functions such as antitumor, immunosupressive or antibiotic activities. NcnH is a hydroxylase involved in the biosynthesis of naphthocyclinone and possibly other polyketides.
Probab=99.86 E-value=4.5e-21 Score=187.52 Aligned_cols=198 Identities=14% Similarity=0.027 Sum_probs=156.6
Q ss_pred CCCCcCCCCCcCceEEeccCcccCcccccCcccccCCCceeecCCCc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017243 1 MKFGNGAYNTMDNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVP-RQLLYGTMVYVRQTIVADASCALSRAVCIATR 79 (375)
Q Consensus 1 ~k~G~~~~~~~dng~i~Fd~vRIP~~~lL~~~~~v~~~G~~~~~~~~-~~~~~~~l~~~R~~~~~~~~~~~~~al~ia~r 79 (375)
+++| +++..++.+.||||+||.+++|+..... .|.. .+.. ....+..+...|+.+++.++|.++++++.+++
T Consensus 170 ~~~G---~r~~~s~~v~f~~v~Vp~~~~l~~~~~~--~~~~--~g~~~~~~~~~~~~~~~~~~aa~~lG~a~~~l~~~~~ 242 (370)
T cd01159 170 HVVG---LRGTGSNTVVVDDVFVPEHRTLTAGDMM--AGDG--PGGSTPVYRMPLRQVFPLSFAAVSLGAAEGALAEFLE 242 (370)
T ss_pred cccc---ccccCCCcEEEcceEcCccceecccccc--cCCC--CCCCCccccCchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3678 9999999999999999999999742210 0100 0000 00112234567899999999999999999999
Q ss_pred hhccccccCCCCCCCCccccccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCChhhHHHHhhhhhHHHH
Q 017243 80 YSAVRRQFGSKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTT 159 (375)
Q Consensus 80 Ya~~R~qfg~~~~~~e~~i~~~q~~q~~L~~~la~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~K~~~t 159 (375)
|+..|.+|+.. + .||.++|.+|++|+++.+...+.+.+.....+.+++... .++. ...+....++++|++++
T Consensus 243 ~~~~R~~~~~~-g---~~i~~~~~v~~~la~~~~~l~~a~~~~~~aa~~~~~~~~---~~~~-~~~~~~~~~~~aK~~~~ 314 (370)
T cd01159 243 LAGKRVRQYGA-A---VKMAEAPITQLRLAEAAAELDAARAFLERATRDLWAHAL---AGGP-IDVEERARIRRDAAYAA 314 (370)
T ss_pred HhccCcccCCC-c---cccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCC-CCHHHHHHHHHHHHHHH
Confidence 99999998531 0 189999999999999999999999998888776654311 1111 11234456789999999
Q ss_pred HHHHHHHHHHHHHcccccccccCCcccccccccccccccccc-cchHHHHHHHHH
Q 017243 160 TATADGIEECRKLCGGHGYLCSSGLPELFAVYVPACTYEGDN-IVLLLQVARFLM 213 (375)
Q Consensus 160 ~~~~~~~~~~r~~~GG~G~~~~~~l~~~~~d~~~~~t~EGdn-~Vl~~~iar~ll 213 (375)
+.+.++++.|+++|||.||..++++++++||++...+++|++ +|++..++|.+|
T Consensus 315 e~~~~~~~~a~~~~Gg~g~~~~~~l~r~~Rd~~~~~~~~~~~~~~~~~~~~~~~l 369 (370)
T cd01159 315 KLSAEAVDRLFHAAGGSALYTASPLQRIWRDIHAAAQHAALNPETAAEAYGRALL 369 (370)
T ss_pred HHHHHHHHHHHHhcCchhcccCCcHHHHHHHHHHHhhhhccCcchHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999 999999999876
No 40
>cd01152 ACAD_fadE6_17_26 Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26. Putative acyl-CoA dehydrogenases (ACAD). Mitochondrial acyl-CoA dehydrogenases (ACAD) catalyze the alpha, beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. The ACD family includes the eukaryotic beta-oxidation, as well as amino acid catabolism enzymes. These enzymes share high sequence similarity, but differ in their substrate specificities. The mitochondrial ACD's are generally homotetramers and have an active site glutamate at a conserved position.
Probab=99.86 E-value=1.4e-21 Score=191.71 Aligned_cols=169 Identities=18% Similarity=0.121 Sum_probs=140.0
Q ss_pred CcCceEEeccCcccCcccccCcccccCCCceeecCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCC
Q 017243 10 TMDNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGS 89 (375)
Q Consensus 10 ~~dng~i~Fd~vRIP~~~lL~~~~~v~~~G~~~~~~~~~~~~~~~l~~~R~~~~~~~~~~~~~al~ia~rYa~~R~qfg~ 89 (375)
+.+++.+.||||+||.+++|++.+ +| +. .....+...|+.++..+.+ ++..++.|+.+|.+||.
T Consensus 203 ~~~~~~l~f~~v~Vp~~~~lg~~~----~g-------~~-~~~~~l~~~r~~~~~~~~~----~~~~a~~~a~~r~~~g~ 266 (380)
T cd01152 203 GEFFNEVFLDDVRVPDANRVGEVN----DG-------WK-VAMTTLNFERVSIGGSAAT----FFELLLARLLLLTRDGR 266 (380)
T ss_pred CCCcceEEecCcCcchhcccCCCC----ch-------HH-HHHHHHHhcccccchhhhH----HHHHHHHHHHHHHhcCC
Confidence 457899999999999999998532 23 34 5556677788776554444 45566788888999998
Q ss_pred CCCCCCccccccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCChhhHHHHhhhhhHHHHHHHHHHHHHH
Q 017243 90 KNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEEC 169 (375)
Q Consensus 90 ~~~~~e~~i~~~q~~q~~L~~~la~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~K~~~t~~~~~~~~~~ 169 (375)
||.++|.+|++|+++.+.+++++.+...+.+..+ .+. .....++++|+++++.+.++++.|
T Consensus 267 -------~l~~~~~vq~~la~~~~~l~~a~~l~~~aa~~~~-------~~~-----~~~~~~a~aK~~~~~~a~~v~~~a 327 (380)
T cd01152 267 -------PLIDDPLVRQRLARLEAEAEALRLLVFRLASALA-------AGK-----PPGAEASIAKLFGSELAQELAELA 327 (380)
T ss_pred -------CcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------cCC-----CCChHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999998877766543 221 123447899999999999999999
Q ss_pred HHHccccccccc--------CCcccccccccccccccccccchHHHHHHHHH
Q 017243 170 RKLCGGHGYLCS--------SGLPELFAVYVPACTYEGDNIVLLLQVARFLM 213 (375)
Q Consensus 170 r~~~GG~G~~~~--------~~l~~~~~d~~~~~t~EGdn~Vl~~~iar~ll 213 (375)
++++||.||..+ .++++++||++...++||+++|++..+++.++
T Consensus 328 ~~i~Gg~g~~~~~~~~~~~~~~~~r~~rd~~~~~~~~g~~~~~~~~i~~~~~ 379 (380)
T cd01152 328 LELLGTAALLRDPAPGAELAGRWEADYLRSRATTIYGGTSEIQRNIIAERLL 379 (380)
T ss_pred HHhcCccccccccccccccccHHHHHHHhCccceeeccHHHHHHHHHHHHhc
Confidence 999999999988 58999999999999999999999999999775
No 41
>KOG0138 consensus Glutaryl-CoA dehydrogenase [Amino acid transport and metabolism]
Probab=99.85 E-value=9.1e-22 Score=177.73 Aligned_cols=179 Identities=19% Similarity=0.185 Sum_probs=158.7
Q ss_pred CCCCcCCCCCcCceEEeccCcccCcccccCcccccCCCceeecCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 017243 1 MKFGNGAYNTMDNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRY 80 (375)
Q Consensus 1 ~k~G~~~~~~~dng~i~Fd~vRIP~~~lL~~~~~v~~~G~~~~~~~~~~~~~~~l~~~R~~~~~~~~~~~~~al~ia~rY 80 (375)
.|++ +|.+.||.|..|||+||.||+|... +| +. --++.|+..|++++.+++|++.-++++|.+|
T Consensus 248 gK~s---LRas~tG~Ilmd~V~VPeE~~LPg~-----~s-------~q-gpf~cLnnaR~giAWg~lGase~c~~~arqY 311 (432)
T KOG0138|consen 248 GKFS---LRASATGMILMDGVEVPEENLLPGA-----SS-------LQ-GPFGCLNNARYGIAWGALGASEFCLHTARQY 311 (432)
T ss_pred Ceee---eeecccCceeecCCcCChhhcCCCc-----cc-------cC-CchhhhhhhhhheeehhchhHHHHHHHHHHH
Confidence 3788 9999999999999999999999642 12 11 2467889999999999999999999999999
Q ss_pred hccccccCCCCCCCCccccccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCChhhHHHHhhhhhHHHHH
Q 017243 81 SAVRRQFGSKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTT 160 (375)
Q Consensus 81 a~~R~qfg~~~~~~e~~i~~~q~~q~~L~~~la~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~K~~~t~ 160 (375)
...|+|||. |+..+|..|.+|++|+.++-+.-.++.++.+++++ +. .....+|..|.+.+-
T Consensus 312 ~ldRkQFG~-------PLAanQL~Q~Kladmltei~lgl~~clrl~rLkd~-------g~-----~tp~qiSl~Krn~~g 372 (432)
T KOG0138|consen 312 TLDRKQFGR-------PLAANQLIQKKLADMLTEITLGLQACLRLGRLKDQ-------GK-----ATPEQISLLKRNNCG 372 (432)
T ss_pred HHHHHHhCC-------chhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhc-------cc-----CChhhhHHHhhccch
Confidence 999999999 99999999999999999999998888888887753 21 123457899999999
Q ss_pred HHHHHHHHHHHHcccccccccCCcccccccccccccccccccchHHHHHHHHHH
Q 017243 161 ATADGIEECRKLCGGHGYLCSSGLPELFAVYVPACTYEGDNIVLLLQVARFLMK 214 (375)
Q Consensus 161 ~~~~~~~~~r~~~GG~G~~~~~~l~~~~~d~~~~~t~EGdn~Vl~~~iar~ll~ 214 (375)
-+.+++..+|++.||.|.+.++-+.+-+-|....-||||+-+|..+.++|.+-+
T Consensus 373 KaleiAr~~RdmLGgNGI~deyhv~rh~~nLE~vnTYEGThDihaLilGRaiTG 426 (432)
T KOG0138|consen 373 KALEIARQARDMLGGNGISDEYHVIRHAMNLEAVNTYEGTHDIHALILGRAITG 426 (432)
T ss_pred hHHHHHHHHHHHhcCCcchhHHHHHHHHcCccceecccccchHHHHhhhhhhhh
Confidence 999999999999999999999999999999999999999999999999997643
No 42
>cd01163 DszC Dibenzothiophene (DBT) desulfurization enzyme C. DszC is a flavin reductase dependent enzyme, which catalyzes the first two steps of DBT desulfurization in mesophilic bacteria. DszC converts DBT to DBT-sulfoxide, which is then converted to DBT-sulfone. Bacteria with this enzyme are candidates for the removal of organic sulfur compounds from fossil fuels, which pollute the environment. An equivalent enzyme tdsC, is found in thermophilic bacteria. This alignment also contains a closely related uncharacterized subgroup.
Probab=99.83 E-value=3.9e-20 Score=181.35 Aligned_cols=182 Identities=15% Similarity=0.029 Sum_probs=141.9
Q ss_pred CCCCcCCCCCcCceEEeccCcccCcccccCcccccCCCceeecCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 017243 1 MKFGNGAYNTMDNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRY 80 (375)
Q Consensus 1 ~k~G~~~~~~~dng~i~Fd~vRIP~~~lL~~~~~v~~~G~~~~~~~~~~~~~~~l~~~R~~~~~~~~~~~~~al~ia~rY 80 (375)
+++| +++.+++.|.||||+||.+++|+..+ +|. . ....+...|+.+++.++|.++++++.+++|
T Consensus 179 ~~~G---~~~~~s~~v~f~~v~Vp~~~~lg~~~----~g~-------~--~~~~~~~~~l~~aa~~lG~a~~al~~~~~~ 242 (377)
T cd01163 179 DGFG---QRLTASGTVTFDNVRVEPDEVLPRPN----APD-------R--GTLLTAIYQLVLAAVLAGIARAALDDAVAY 242 (377)
T ss_pred cccc---CccCCcceEEEeeEEECHHHccCCCc----ccc-------c--cccccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3678 99999999999999999999998532 221 1 111234568889999999999999999999
Q ss_pred hcccc-ccCCCCCCCCccccccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCChhhHHHHhhhhhHHHH
Q 017243 81 SAVRR-QFGSKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTT 159 (375)
Q Consensus 81 a~~R~-qfg~~~~~~e~~i~~~q~~q~~L~~~la~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~K~~~t 159 (375)
+..|+ +||.+.. .++.++|.+|++|+++.+..++.+.+...+.+.+++....-..-+.....+....++++|++++
T Consensus 243 ~~~R~~~~g~~~~---~~~~~~~~v~~~la~~~~~l~aar~~~~~aa~~~d~~~~~~~~~~~~~~~~~~~~~~~aK~~~~ 319 (377)
T cd01163 243 VRSRTRPWIHSGA---ESARDDPYVQQVVGDLAARLHAAEALVLQAARALDAAAAAGTALTAEARGEAALAVAAAKVVVT 319 (377)
T ss_pred HHhcCCCCCcCCc---cccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHHHHH
Confidence 99994 8886221 1689999999999999999999999988877766542110000000011234567899999999
Q ss_pred HHHHHHHHHHHHHcccccccccCCcccccccccccccccccc
Q 017243 160 TATADGIEECRKLCGGHGYLCSSGLPELFAVYVPACTYEGDN 201 (375)
Q Consensus 160 ~~~~~~~~~~r~~~GG~G~~~~~~l~~~~~d~~~~~t~EGdn 201 (375)
+.+.++++.|+++|||.||+.+++++++|||++...+....+
T Consensus 320 ~~a~~~~~~a~q~~Gg~g~~~~~~l~r~~Rd~~~~~~h~~~~ 361 (377)
T cd01163 320 RLALDATSRLFEVGGASATAREHNLDRHWRNARTHTLHNPVI 361 (377)
T ss_pred HHHHHHHHHHHHHhCchhhccccCCcchhhhhhhhhccCHHH
Confidence 999999999999999999999999999999999987665543
No 43
>PTZ00457 acyl-CoA dehydrogenase; Provisional
Probab=99.77 E-value=2.3e-16 Score=158.55 Aligned_cols=142 Identities=14% Similarity=0.032 Sum_probs=124.0
Q ss_pred ceEEeccCcccCcccccCcccccCCCceeecCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCC
Q 017243 13 NGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGSKNG 92 (375)
Q Consensus 13 ng~i~Fd~vRIP~~~lL~~~~~v~~~G~~~~~~~~~~~~~~~l~~~R~~~~~~~~~~~~~al~ia~rYa~~R~qfg~~~~ 92 (375)
.+.|+|||| |.+|+||..+ +| ++ .++..+..+|+.+++.++|.+++|++.+++|+.
T Consensus 218 ~~eV~FddV--P~~~vLG~~g----~G-------~~-~a~~~L~~~Rl~~aA~~vGia~~ale~av~ya~---------- 273 (520)
T PTZ00457 218 GDSVVFENT--PAADVVGVVG----EG-------FK-DAMITLFTEQYLYAASLLGIMKRVVQELRGSNA---------- 273 (520)
T ss_pred cCEEEECCC--CHHHhCCCCC----ch-------HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------
Confidence 489999998 9999998532 23 66 788899999999999999999999999999984
Q ss_pred CCCccccccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCChhhHHHHhhhhhHHHH---HHHHHHHHHH
Q 017243 93 GPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTT---TATADGIEEC 169 (375)
Q Consensus 93 ~~e~~i~~~q~~q~~L~~~la~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~K~~~t---~~~~~~~~~~ 169 (375)
+|.+|++|++|.+.+++++.+...+.++++ .+. .+.+..++++|+|+| +.++.++++|
T Consensus 274 --------~QaVq~~LAdma~~ieAarsl~y~AA~~~D-------~g~----~d~~~eAa~ak~~~s~~~e~~~~~~~~~ 334 (520)
T PTZ00457 274 --------EEGATDTVASFACAMYAMESTLYALTANLD-------LPT----EDSLLECTLVSAFVQSTTNQLLSILETA 334 (520)
T ss_pred --------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------CCC----cccHHHHHHHHHHhhhhHHHHHHHhhhh
Confidence 379999999999999999999887766653 221 356788999999999 8888888888
Q ss_pred HHHcccccccccCCcccccccccccccccccccchH
Q 017243 170 RKLCGGHGYLCSSGLPELFAVYVPACTYEGDNIVLL 205 (375)
Q Consensus 170 r~~~GG~G~~~~~~l~~~~~d~~~~~t~EGdn~Vl~ 205 (375)
.| .++|+++++||+++++|+||+|++|+
T Consensus 335 ~~--------~~~~~E~~~rd~ri~~i~egs~~~l~ 362 (520)
T PTZ00457 335 TP--------PSTTLEKCFANARLFLSMMESRDFLY 362 (520)
T ss_pred cc--------CCccHHHHHHHHHHHHHhhhHHHHHH
Confidence 77 78999999999999999999999999
No 44
>KOG1469 consensus Predicted acyl-CoA dehydrogenase [General function prediction only]
Probab=99.70 E-value=5e-17 Score=145.19 Aligned_cols=175 Identities=17% Similarity=0.191 Sum_probs=151.4
Q ss_pred CceEEeccCcccCcccccCcccccCCCceeecCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCC
Q 017243 12 DNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGSKN 91 (375)
Q Consensus 12 dng~i~Fd~vRIP~~~lL~~~~~v~~~G~~~~~~~~~~~~~~~l~~~R~~~~~~~~~~~~~al~ia~rYa~~R~qfg~~~ 91 (375)
.+++|+|+|||||.+|||-+.| .| +. ++-+.|..||+..++..+|.+.+|+++.-..+..|..||+
T Consensus 209 GH~Ei~F~~VrVP~~NmlLGeG----rG-------FE-IaQGRLGPGRiHHcMRliG~aERal~lm~~R~~sRiaFgk-- 274 (392)
T KOG1469|consen 209 GHFEIHFENVRVPATNMLLGEG----RG-------FE-IAQGRLGPGRIHHCMRLIGLAERALQLMKERALSRIAFGK-- 274 (392)
T ss_pred CcceEEEEEEEeeccceeecCC----Cc-------ce-eeccccCCcHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcc--
Confidence 4679999999999999986533 13 44 6778899999999999999999999999999999999999
Q ss_pred CCCCccccccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCChhhHHHHhhhhhHHHHHHHHHHHHHHHH
Q 017243 92 GGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRK 171 (375)
Q Consensus 92 ~~~e~~i~~~q~~q~~L~~~la~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~K~~~t~~~~~~~~~~r~ 171 (375)
++..+-++.+-|+..-.+++-.|++..+.....+.. |+ .......+|.|..+...+..+++.++|
T Consensus 275 -----~l~q~~s~~~diA~sRveiEqaRLLvLkAAh~mD~~------G~----k~Ak~~iAMiKv~AP~ma~kilD~AiQ 339 (392)
T KOG1469|consen 275 -----KLVQHGSVAHDIAESRVEIEQARLLVLKAAHSMDTL------GN----KGAKKEIAMIKVAAPNMASKILDRAIQ 339 (392)
T ss_pred -----hhhhcchHHHHHHHHHhHhhhhhhhhhhhhhhhhhh------cc----hhhhhheeeeeecCcHHHHHHHHHHHH
Confidence 999999999999999888888888766655443321 32 345566899999999999999999999
Q ss_pred HcccccccccCCcccccccccccccccccccchHHHHHHHHHHH
Q 017243 172 LCGGHGYLCSSGLPELFAVYVPACTYEGDNIVLLLQVARFLMKT 215 (375)
Q Consensus 172 ~~GG~G~~~~~~l~~~~~d~~~~~t~EGdn~Vl~~~iar~ll~~ 215 (375)
.|||.|.+++.++.++|.-+++.++.+|..+|.+..+|+--++.
T Consensus 340 ~~G~aG~s~~~~la~l~~~~r~lriadgPd~vhL~ai~~le~~~ 383 (392)
T KOG1469|consen 340 VQGGAGVSSDTPLANLYAIARVLRIADGPDEVHLSAIAKLELRD 383 (392)
T ss_pred HhcCCCCCCCceeeEEEEEeeeEEeccCCCccchhhhhhhhHHH
Confidence 99999999999999999999999999999999999999865554
No 45
>TIGR02309 HpaB-1 4-hydroxyphenylacetate 3-monooxygenase, oxygenase component. This gene for this monooxygenase is found within apparent operons for the degradation of 4-hydroxyphenylacetic acid in Deinococcus, Thermus and Oceanobacillus. Phylogenetic trees support inclusion of the Bacillus halodurans sequence above trusted although the complete 4-hydroxyphenylacetic acid degradation pathway may not exist in that organism. Generally, this enzyme acts with the assistance of a small flavin reductase domain protein (HpaC) to provide the cycle the flavin reductant for the reaction. This family of sequences is a member of a larger subfamily of monooxygenases (pfam03241).
Probab=99.32 E-value=1.3e-11 Score=123.74 Aligned_cols=139 Identities=11% Similarity=0.079 Sum_probs=105.8
Q ss_pred CceEEeccCcccCcccc--cCcccccCCCceeecCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCC
Q 017243 12 DNGVLRFEHVRIPRNQM--LMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGS 89 (375)
Q Consensus 12 dng~i~Fd~vRIP~~~l--L~~~~~v~~~G~~~~~~~~~~~~~~~l~~~R~~~~~~~~~~~~~al~ia~rYa~~R~qfg~ 89 (375)
..+.|.||||+||.||+ +|...... .| +. .++ .++.++..+++....+++.++.|+.. .+||.
T Consensus 251 ~da~vvFDdV~VPwe~VF~~g~~e~a~-~~-------f~----~~~--~~~~~~~~~~g~~~~~ld~~~g~a~~-~a~~~ 315 (477)
T TIGR02309 251 MDALVIFDDVLVPWERIFILGDVELCN-NA-------YA----ATG--AVNHMAHQVVALKIAKTEAFLGVAAL-MAEGI 315 (477)
T ss_pred CeEEEEeCceeccHHHhhhcCCHHHHH-HH-------HH----HHH--HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhh
Confidence 67999999999999999 76421000 11 11 111 22556778888888999999999999 99998
Q ss_pred CCCCCCccccccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCChhhHHHHhhhhhHHHHHHHHHHHHHH
Q 017243 90 KNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEEC 169 (375)
Q Consensus 90 ~~~~~e~~i~~~q~~q~~L~~~la~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~K~~~t~~~~~~~~~~ 169 (375)
++.++|.+|.+|+++++..++++.+..++.... +.+......+....++++|.++++...++. +|
T Consensus 316 -------gi~~~q~VQ~kLAEm~~~~Ea~ral~~aAa~~~-------~~~~~G~~~P~~~~as~aKl~~~e~~~rv~-~a 380 (477)
T TIGR02309 316 -------GADGFQHVQEKIAEIIVYLEAMKAFWTRAEEEA-------KENAYGLMTPDRGALDAARNLYPRLYPRLR-EI 380 (477)
T ss_pred -------CcccchHHHHHHHHHHHHHHHHHHHHHHHHhcC-------CcCCCCcccCCHHHHHHHHHHHHHHHHHHH-HH
Confidence 999999999999999999999998876664432 222111111235668999999999999995 99
Q ss_pred HHHcccccccc
Q 017243 170 RKLCGGHGYLC 180 (375)
Q Consensus 170 r~~~GG~G~~~ 180 (375)
+|.+||.|++.
T Consensus 381 lq~lGG~G~~~ 391 (477)
T TIGR02309 381 LEQLGASGLIT 391 (477)
T ss_pred HHHHhCCcEEe
Confidence 99999999875
No 46
>PF08028 Acyl-CoA_dh_2: Acyl-CoA dehydrogenase, C-terminal domain; InterPro: IPR013107 Acyl Co-A dehydrogenases (1.3.99.3 from EC) are enzymes that catalyse the first step in each cycle of beta-oxidation in mitochondion. Acyl-CoA dehydrogenases [, , ] catalyze the alpha,beta-dehydrogenation of acyl-CoA thioesters to the corresponding trans 2,3-enoyl CoA-products with concommitant reduction of enzyme-bound FAD. Reoxidation of the flavin involves transfer of electrons to ETF (electron transfering flavoprotein). These enzymes are homodimers containing one molecule of FAD. The monomeric enzyme is folded into three domains of approximately equal size. The N-terminal and the C-terminal are mainly alpha-helices packed together, and the middle domain consists of two orthogonal beta-sheets. The flavin ring is buried in the crevise between two alpha-helical domains and the beta-sheet of one subunit, and the adenosine pyrophosphate moiety is stretched into the subunit junction with one formed by two C-terminal domains []. The C-terminal domain of Acyl-CoA dehydrogenase is an all-alpha, four helical up-and-down bundle.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3AFE_C 3AFF_A 2JBT_D 2JBS_C 2JBR_B 2RFQ_B 2OR0_B.
Probab=99.15 E-value=2.8e-10 Score=95.10 Aligned_cols=128 Identities=17% Similarity=0.058 Sum_probs=102.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccccccCCCCCCCCccccccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 017243 60 QTIVADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQAN 139 (375)
Q Consensus 60 ~~~~~~~~~~~~~al~ia~rYa~~R~qfg~~~~~~e~~i~~~q~~q~~L~~~la~~~a~~~~~~~~~~~~~~~~~~~~~~ 139 (375)
+.+++..+|+++.+++.+++|...|...+. -.|+.+.|.+|.+|..+.+...+.+.........+.+. .+.+
T Consensus 1 L~~aa~~lG~A~~al~~~~~~~~~r~~~~~-----~~~~~~~p~~q~~lgea~~~~~aa~~~l~~~~~~~~~~---~~~g 72 (134)
T PF08028_consen 1 LSFAAVYLGIARGALDEFVEYLRGRVRASG-----GAPLADDPYIQARLGEAAARLDAARALLYRAARRLWEA---ADAG 72 (134)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTT-----TSBCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHTT
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHhcCCCCC-----CCchhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHcc
Confidence 467888999999999999999998877211 12899999999999999999999988877776654432 2333
Q ss_pred CCCChhhHHHHhhhhhHHHHHHHHHHHHHHHHHcccccccccCCccccccccccccc
Q 017243 140 DFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLCSSGLPELFAVYVPACT 196 (375)
Q Consensus 140 ~~~~~~~~~~~~s~~K~~~t~~~~~~~~~~r~~~GG~G~~~~~~l~~~~~d~~~~~t 196 (375)
+.. ..+........|.++++.+.++++.+.+.+||.|+...+|+.|+|||+.....
T Consensus 73 ~~~-~~~~~~~~~~~~~~a~~~a~~av~~l~~~~G~~a~~~~~pl~R~~RD~~~~~~ 128 (134)
T PF08028_consen 73 EEL-TPEERARLRAAKAHAARLAREAVDRLFRLAGGSALYRSSPLERIWRDVRAGAQ 128 (134)
T ss_dssp -----HHHHHHHHHHHHHHHHHHHHHHHHHHCCSGGGGGBTTSHHHHHHHHHHHHTT
T ss_pred CCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHhhhcCCcHHHHHHHHHHHhh
Confidence 322 24556667888999999999999999999999999999999999999886543
No 47
>TIGR02310 HpaB-2 4-hydroxyphenylacetate 3-monooxygenase, oxygenase component. This gene for this monooxygenase is found within apparent operons for the degradation of 4-hydroxyphenylacetic acid in Shigella, Photorhabdus and Pasteurella. The family modelled by this alignment is narrowly limited to gammaproteobacteria to exclude other aromatic hydroxylases involved in various secondary metabolic pathways. Generally, this enzyme acts with the assistance of a small flavin reductase domain protein (HpaC) to provide the cycle the flavin reductant for the reaction. This family of sequences is a member of a larger subfamily of monooxygenases (pfam03241).
Probab=94.37 E-value=0.54 Score=47.95 Aligned_cols=71 Identities=7% Similarity=-0.016 Sum_probs=47.9
Q ss_pred ccccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCChhhHHHHhhhhhHHHHHHHHHHHHHHHHHccc
Q 017243 98 VIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGG 175 (375)
Q Consensus 98 i~~~q~~q~~L~~~la~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~K~~~t~~~~~~~~~~r~~~GG 175 (375)
+-.+|.+|.+|.++++..+.+......+.. .......+..-+-...+-.+|.+.++.--++++.+++.+||
T Consensus 328 ~~~~~hVqekl~Eli~~~E~~~a~~~Aa~~-------~~~~~~~G~~~P~~~~~~a~r~~~~~~y~r~~eil~~~~ag 398 (519)
T TIGR02310 328 VLEFRGVQAQMGEVVAWRNLFWTLTDAMAG-------SAYQWKNGAQLPSAQALQTYRVMAPMAYHTIKKIIEQTVTS 398 (519)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHh-------cCccCCCCeEeeCHHHHHHHHHHhhhhhHHHHHHHHHHccC
Confidence 557899999999999888877665433211 00111111122334456789999999999999999988775
No 48
>COG2368 Aromatic ring hydroxylase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=90.41 E-value=4.3 Score=40.66 Aligned_cols=72 Identities=15% Similarity=0.075 Sum_probs=49.7
Q ss_pred ccccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCChhhHHHHhhhhhHHHHHHHHHHHHHHHHHcccc
Q 017243 98 VIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGH 176 (375)
Q Consensus 98 i~~~q~~q~~L~~~la~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~K~~~t~~~~~~~~~~r~~~GG~ 176 (375)
+.+++.+|.+|.+|++..+.+..+...+.. +. .+....-.-+-...+-..|.+++..-.++.+...++.||-
T Consensus 324 v~~~~hIq~kl~Emi~~~e~~~al~~Aa~~---~a----~~~~~G~~~Pn~~~~n~~r~~~~~~~~~~~~~l~~i~gg~ 395 (493)
T COG2368 324 VEEFRHIQEKLGEMIALLELMWALSDAAAE---EA----QKNPNGAWLPNPAYANVGRVYAPKAYPRIKEILQDISGGG 395 (493)
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHh---hc----ccCCCCceecCHHHHhhHHHhcccchHHHHHHHHHHhcCc
Confidence 678999999999999877766555433211 11 1111122334456677899999999999999999988763
No 49
>PF03241 HpaB: 4-hydroxyphenylacetate 3-hydroxylase C terminal; InterPro: IPR024719 This C-terminal domain is found in HpaB, which encodes part of the 4-hydroxyphenylacetate 3-hydroxylase from Escherichia coli []. The enzyme is NADH-dependent and uses FAD as the redox chromophore. This domain is also found in pyoverdin chromophore biosynthetic protein PvcC, which may play a role in one of the proposed hydroxylation steps of pyoverdine chromophore biosynthesis [] and in 4-hydroxybutyryl-CoA dehydratase (4-BUDH), a key enzyme in the metabolism of gamma-aminobutyrate [].; PDB: 3HWC_D 1U8V_D 2YYM_A 2YYI_A 2YYJ_A 2YYL_A 2YYG_A 2YYK_A.
Probab=83.67 E-value=6.1 Score=35.32 Aligned_cols=74 Identities=12% Similarity=0.007 Sum_probs=51.1
Q ss_pred ccccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCChhhHHHHhhhhhHHHHHHHHHHHHHHHHHccccc
Q 017243 98 VIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGHG 177 (375)
Q Consensus 98 i~~~q~~q~~L~~~la~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~K~~~t~~~~~~~~~~r~~~GG~G 177 (375)
+-.+|.||.+|.++++..+.++........ ...........+-...+..+|.+.++.--++++.+++++||.=
T Consensus 44 ~~~~~hVqekl~Eli~~~E~~~a~~~Aae~-------~a~~~~~G~~~P~~~~~~a~r~~~~~~y~r~~eil~~l~gg~l 116 (205)
T PF03241_consen 44 IDKFPHVQEKLGELIAYLETLRALLIAAEA-------EAEPDPSGVYVPNPLPLNAARNYFPKNYPRIVEILQDLGGGGL 116 (205)
T ss_dssp GTTSHHHHHHHHHHHHHHHHHHHHHHHHHH-------T-EE-TTSSEE--HHHHHHHHHHHHHHHHHHHHHHHHHHGGGG
T ss_pred CccchHHHHHHHHHHHHHHHHHHHHHHHHh-------cCccCCCCeEeECHHHHHHHHHHHHHHHHHHHHHHHHHhCCCe
Confidence 667899999999999888877766433211 1111122223344455778999999999999999999999844
Q ss_pred c
Q 017243 178 Y 178 (375)
Q Consensus 178 ~ 178 (375)
.
T Consensus 117 i 117 (205)
T PF03241_consen 117 I 117 (205)
T ss_dssp T
T ss_pred e
Confidence 3
No 50
>PTZ00457 acyl-CoA dehydrogenase; Provisional
Probab=73.62 E-value=20 Score=36.81 Aligned_cols=84 Identities=19% Similarity=0.035 Sum_probs=60.2
Q ss_pred HHHHHHHHhhccccccCCCCCCCCccccccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCChhhHHHHh
Q 017243 72 RAVCIATRYSAVRRQFGSKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACT 151 (375)
Q Consensus 72 ~al~ia~rYa~~R~qfg~~~~~~e~~i~~~q~~q~~L~~~la~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (375)
.-+..++.|...|. |+ .|.+-|....||++..+.+||+.....++.... .++-+ ..-|. .
T Consensus 416 ~~~~~~v~~~~~~~--~~-------~i~~~q~~l~rlad~a~~lyam~a~~sra~~~~-------~~~~~---~~~~e-~ 475 (520)
T PTZ00457 416 VAFGNAVEATFVRS--GS-------QVPYQQLLLNRLGEAASLLYAASAVASRASMCV-------SKGLP---SAKVE-G 475 (520)
T ss_pred HHHHHHHHHHHHHH--Hh-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HcCCC---chHHH-H
Confidence 34666677776654 45 799999999999999999999988765553322 22211 12232 3
Q ss_pred hhhhHHHHHHHHHHHHHHHHHccc
Q 017243 152 AGLKSLTTTATADGIEECRKLCGG 175 (375)
Q Consensus 152 s~~K~~~t~~~~~~~~~~r~~~GG 175 (375)
.++++||.+....+-..+-+++..
T Consensus 476 ~la~~fc~~a~~rv~~~~~~~~~~ 499 (520)
T PTZ00457 476 ELASAFIAMAVSRARQLSEESCNV 499 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcc
Confidence 589999999999988888888865
No 51
>KOG0137 consensus Very-long-chain acyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=47.12 E-value=76 Score=32.85 Aligned_cols=68 Identities=18% Similarity=0.147 Sum_probs=53.3
Q ss_pred cccccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCChhhHHHHhhhhhHHHHHHHHHHHHHHHHHccc
Q 017243 97 QVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGG 175 (375)
Q Consensus 97 ~i~~~q~~q~~L~~~la~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~K~~~t~~~~~~~~~~r~~~GG 175 (375)
-|.+-|.+-+||+..++..|++.....+..+.|.. + ++....+...+++||++........|-++-++
T Consensus 536 ~iv~~q~~l~rlA~~~~~iYam~a~isRASrS~~i-------g----l~~aDhEl~~at~~C~ea~~~~~~~l~~~~~~ 603 (634)
T KOG0137|consen 536 GIVEEQSVLQRLANVAINIYAMVAVISRASRSYSI-------G----LPNADHELALATAICSEASLRVLRWLWAASSG 603 (634)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHhc-------C----CcchhHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 68899999999999999999998887777666642 1 12223346789999999999888888887766
No 52
>PF10799 YliH: Biofilm formation protein (YliH/bssR); InterPro: IPR020359 This entry represents Biofilm regulator, BssR (from the gene also known as yliH). It represses Escherichia coli biofilm formation in M9C glu and LB glu media but not in M9C and LB media. It may act as a global regulator of several genes involved in catabolite repression and stress response and regulation of the uptake and export of signalling pathways. It could also be involved the regulation of indole as well as uptake and export of AI-2 through a cAMP-dependent pathway [].
Probab=43.88 E-value=16 Score=29.02 Aligned_cols=28 Identities=11% Similarity=0.205 Sum_probs=25.0
Q ss_pred hcCCCCHHHHHHHHHHHHHHHHhhcccC
Q 017243 347 STGCITAKQASLANEQLRSLYSQVFTCV 374 (375)
Q Consensus 347 ~~g~ls~~q~~~l~~~i~~l~~~lrp~~ 374 (375)
.-||+|-++.+.+|+.+-+||.++|.++
T Consensus 30 AKGYMSVSEsdhLRdn~FeLc~e~r~~~ 57 (127)
T PF10799_consen 30 AKGYMSVSESDHLRDNLFELCREMRDKA 57 (127)
T ss_pred HcCccccchhhhHHHHHHHHHHHHHHhh
Confidence 4699999999999999999999998753
No 53
>PF02607 B12-binding_2: B12 binding domain; InterPro: IPR003759 Cobalamin-dependent methionine synthase (2.1.1.13 from EC) is a large modular protein that catalyses methyl transfer from methyltetrahydrofolate (CH3-H4folate) to homocysteine. During the catalytic cycle, it supports three distinct methyl transfer reactions, each involving the cobalamin (vitamin B12) cofactor and a substrate bound to its own functional unit []. The cobalamin cofactor plays an essential role in this reaction, accepting the methyl group from CH3-H4folate to form methylcob(III)alamin, and in turn donating the methyl group to homocysteine to generate methionine and cob(I)alamin. Methionine synthase is a large enzyme composed of four structurally and functionally distinct modules: the first two modules bind homocysteine and CH3-H4folate, the third module binds the cobalamin cofactor and the C-terminal module binds S-adenosylmethionine. The cobalamin-binding module is composed of two structurally distinct domains: a 4-helical bundle cap domain (residues 651-740 in the Escherichia coli enzyme) and an alpha/beta B12-binding domain (residues 741-896) (IPR006158 from INTERPRO). The 4-helical bundle forms a cap over the alpha/beta domain, which acts to shield the methyl ligand of cobalamin from solvent []. Furthermore, in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO). The alpha/beta domain is a common cobalamin-binding motif, whereas the 4-helical bundle domain with its methyl cap is a distinctive feature of methionine synthases. This entry represents the 4-helical bundle cap domain. This domain is also present in other shorter proteins that bind to B12, and is always found N terminus to the alpha/beta B12-binding domain.; GO: 0008705 methionine synthase activity, 0031419 cobalamin binding, 0046872 metal ion binding, 0009086 methionine biosynthetic process; PDB: 3EZX_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 2I2X_P.
Probab=42.28 E-value=81 Score=22.83 Aligned_cols=38 Identities=26% Similarity=0.358 Sum_probs=29.2
Q ss_pred HHHHHhhhhHHHhcCCCCHHHHHHHHHHHHHHHHhhcc
Q 017243 335 LHLVHKHLGDFVSTGCITAKQASLANEQLRSLYSQVFT 372 (375)
Q Consensus 335 L~~I~~~~~~fl~~g~ls~~q~~~l~~~i~~l~~~lrp 372 (375)
+.-.-...|...+.|-++..|.-...+.+...+..|+|
T Consensus 42 l~p~m~~iG~~w~~~~~~v~~e~~as~~~~~~l~~l~p 79 (79)
T PF02607_consen 42 LMPAMEEIGELWEEGEISVAQEHLASEAMRAALSILKP 79 (79)
T ss_dssp HHHHHHHHHHHHHTTSS-HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHhhCC
Confidence 33344567888899999999988888888888888876
No 54
>PRK12302 bssR biofilm formation regulatory protein BssR; Reviewed
Probab=30.33 E-value=38 Score=26.62 Aligned_cols=28 Identities=7% Similarity=0.197 Sum_probs=24.8
Q ss_pred hcCCCCHHHHHHHHHHHHHHHHhhcccC
Q 017243 347 STGCITAKQASLANEQLRSLYSQVFTCV 374 (375)
Q Consensus 347 ~~g~ls~~q~~~l~~~i~~l~~~lrp~~ 374 (375)
.-||+|-++.+.+|+.+-+||.+++.++
T Consensus 30 AKGYMSVSEsdhLRdN~FeL~re~~~~s 57 (127)
T PRK12302 30 AKGYMSVSESDHLRDNFFELNRELHDKS 57 (127)
T ss_pred HcCccccchhhHHHHHHHHHHHHHHHhh
Confidence 4699999999999999999999998753
No 55
>PF02337 Gag_p10: Retroviral GAG p10 protein; InterPro: IPR003322 Retroviral matrix proteins (or major core proteins) are components of envelope-associated capsids, which line the inner surface of virus envelopes and are associated with viral membranes []. Matrix proteins are produced as part of Gag precursor polyproteins. During viral maturation, the Gag polyprotein is cleaved into major structural proteins by the viral protease, yielding the matrix (MA), capsid (CA), nucleocapsid (NC), and some smaller peptides. Gag-derived proteins govern the entire assembly and release of the virus particles, with matrix proteins playing key roles in Gag stability, capsid assembly, transport and budding. Although matrix proteins from different retroviruses appear to perform similar functions and can have similar structural folds, their primary sequences can be very different. This entry represents matrix proteins from beta-retroviruses such as Mason-Pfizer monkey virus (MPMV) (Simian Mason-Pfizer virus) and Mouse mammary tumor virus (MMTV) [, ]. This entry also identifies matrix proteins from several eukaryotic endogenous retroviruses, which arise when one or more copies of the retroviral genome becomes integrated into the host genome [].; GO: 0005198 structural molecule activity, 0019028 viral capsid; PDB: 2F77_X 2F76_X.
Probab=29.84 E-value=1.2e+02 Score=23.35 Aligned_cols=44 Identities=16% Similarity=0.196 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHhhhhHHHhcCCCCHHHHHHHHHHHHHHHHhhcc
Q 017243 327 EILCHIYALHLVHKHLGDFVSTGCITAKQASLANEQLRSLYSQVFT 372 (375)
Q Consensus 327 ~~L~~LyaL~~I~~~~~~fl~~g~ls~~q~~~l~~~i~~l~~~lrp 372 (375)
++|..+| ..|++-..||.+.|-|+.+..+.+.+.+...+++=-|
T Consensus 28 ~~L~~f~--~~i~~~~PWF~~eG~l~~~~W~kvG~~l~~~~~~~~~ 71 (90)
T PF02337_consen 28 KDLINFL--SFIDKVCPWFPEEGTLDLDNWKKVGEELKRYYAEQGP 71 (90)
T ss_dssp HHHHHHH--HHHHHHTT-SS--SS-HHHHHHHHHHHHHHHHHHCST
T ss_pred HHHHHHH--HHHHHhCCCCCCCCCcCHHHHHHHHHHHHHHHHHhCC
Confidence 4444443 5688899999999999999999999999886665444
No 56
>PF10925 DUF2680: Protein of unknown function (DUF2680); InterPro: IPR024485 Members in this family of proteins are annotated as YckD however currently no function is known.
Probab=26.72 E-value=1.1e+02 Score=21.48 Aligned_cols=28 Identities=21% Similarity=0.369 Sum_probs=23.2
Q ss_pred hhHHHhcCCCCHHHHHHHHHHHHHHHHh
Q 017243 342 LGDFVSTGCITAKQASLANEQLRSLYSQ 369 (375)
Q Consensus 342 ~~~fl~~g~ls~~q~~~l~~~i~~l~~~ 369 (375)
..-+++.|.||.+|++.+.+.+.+-...
T Consensus 24 idk~Ve~G~iTqeqAd~ik~~id~~~~~ 51 (59)
T PF10925_consen 24 IDKYVEAGVITQEQADAIKKHIDQRQEY 51 (59)
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 3457999999999999999998876543
No 57
>PF06892 Phage_CP76: Phage regulatory protein CII (CP76); InterPro: IPR009679 This entry is represented by Bacteriophage 186, CII. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several phage regulatory protein CII (CP76) sequences which are thought to be DNA binding proteins which are involved in the establishment of lysogeny [].
Probab=25.71 E-value=4.2e+02 Score=22.60 Aligned_cols=81 Identities=14% Similarity=0.144 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcc-C--C-CCChHHHHHHHHHHHHHH-HHHhhhhHHHhcCCCCHHHHHHHHHHH
Q 017243 289 LAADLVEAAVAHCQLIVVSKFIEKLQQD-I--P-GKGVKPILEILCHIYALH-LVHKHLGDFVSTGCITAKQASLANEQL 363 (375)
Q Consensus 289 ~~~~~~~la~A~~~~~~l~~F~~~v~~~-~--~-~~~~~~vL~~L~~LyaL~-~I~~~~~~fl~~g~ls~~q~~~l~~~i 363 (375)
...+++.+.++-.++-+++.+...+.-. + | ....++++..++..-+-. .+-.....-+++|.||..+-..|.+.+
T Consensus 50 t~~el~~i~~~Tgd~~il~~ll~~lg~v~v~lP~~~~~~~l~~~~l~~~a~~Gela~~a~ea~~dgrit~~er~~i~~~a 129 (162)
T PF06892_consen 50 TVDELIAITDATGDYRILDALLAELGCVPVVLPKNEAAKSLPERVLKATAEVGELAREALEALSDGRITRSERNRIIKEA 129 (162)
T ss_pred CHHHHHHHHHHhCCcHHHHHHHHHCCCeeecCCccccccCHHHHHHHHHHHHHHHHHHHHHHhcCCCcCHHHHHHHHHHH
Confidence 3568899999999999999999888621 1 1 122236666666655433 455666666799999999977777776
Q ss_pred HHHHHh
Q 017243 364 RSLYSQ 369 (375)
Q Consensus 364 ~~l~~~ 369 (375)
++.+..
T Consensus 130 ~~ai~~ 135 (162)
T PF06892_consen 130 NAAIRS 135 (162)
T ss_pred HHHHHH
Confidence 655543
No 58
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=25.03 E-value=5.8e+02 Score=25.25 Aligned_cols=101 Identities=19% Similarity=0.177 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHHHHhhccccccCCCCCCCCccccccHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 017243 52 YGTMVYVRQTIVADA---SCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWL 128 (375)
Q Consensus 52 ~~~l~~~R~~~~~~~---~~~~~~al~ia~rYa~~R~qfg~~~~~~e~~i~~~q~~q~~L~~~la~~~a~~~~~~~~~~~ 128 (375)
|..|..-|+.++..- .|-+..+.+.|.+-+. +.|. +.+|-|=+-.+|.+|--+-=..+....
T Consensus 204 yr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal---~~Gd------------ra~~arc~~~~aDIyR~~gd~e~af~r 268 (518)
T KOG1941|consen 204 YRAMSLYHMAVALRLLGRLGDAMECCEEAMKLAL---QHGD------------RALQARCLLCFADIYRSRGDLERAFRR 268 (518)
T ss_pred HHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHH---HhCC------------hHHHHHHHHHHHHHHHhcccHhHHHHH
Confidence 455555555554432 3344455555555553 2333 556666666667777655555556666
Q ss_pred HHHHHHHhcc-CCCCChhhHHHHhhhhhHHHHHHHHHHHHHH
Q 017243 129 YTDVTQRLQA-NDFSTLPEAHACTAGLKSLTTTATADGIEEC 169 (375)
Q Consensus 129 ~~~~~~~~~~-~~~~~~~~~~~~~s~~K~~~t~~~~~~~~~~ 169 (375)
|+.++.-... || .+.++.++.+++|.+.+.....-+..|
T Consensus 269 Ye~Am~~m~~~gd--rmgqv~al~g~Akc~~~~r~~~k~~~C 308 (518)
T KOG1941|consen 269 YEQAMGTMASLGD--RMGQVEALDGAAKCLETLRLQNKICNC 308 (518)
T ss_pred HHHHHHHHhhhhh--hHHHHHHHHHHHHHHHHHHHhhccccc
Confidence 7665543222 33 457889999999999988766554443
No 59
>PF02268 TFIIA_gamma_N: Transcription initiation factor IIA, gamma subunit, helical domain; InterPro: IPR015872 Transcription factor IIA (TFIIA) is one of several factors that form part of a transcription pre-initiation complex along with RNA polymerase II, the TATA-box-binding protein (TBP) and TBP-associated factors, on the TATA-box sequence upstream of the initiation start site. After initiation, some components of the pre-initiation complex (including TFIIA) remain attached and re-initiate a subsequent round of transcription. TFIIA binds to TBP to stabilise TBP binding to the TATA element. TFIIA also inhibits the cytokine HMGB1 (high mobility group 1 protein) binding to TBP [], and can dissociate HMGB1 already bound to TBP/TATA-box. Human and Drosophila TFIIA have three subunits: two large subunits, LN/alpha and LC/beta, derived from the same gene, and a small subunit, S/gamma. Yeast TFIIA has two subunits: a large TOA1 subunit that shows sequence similarity to the N-terminal of LN/alpha and the C-terminal of LC/beta, and a small subunit, TOA2 that is highly homologous with S/gamma. The conserved regions of the large and small subunits of TFIIA combine to form two domains: a four-helix bundle (helical domain) composed of two helices from each of the N-terminal regions of TOA1 and TOA2 in yeast; and a beta-barrel (beta-barrel domain) composed of beta-sheets from the C-terminal regions of TOA1 and TOA2 []. This entry represents the alpha-helical domain found at the N-terminal of the gamma subunit of transcription factor TFIIA.; GO: 0006367 transcription initiation from RNA polymerase II promoter, 0005672 transcription factor TFIIA complex; PDB: 1NVP_D 1RM1_B 1YTF_D 1NH2_D.
Probab=23.62 E-value=2.4e+02 Score=19.02 Aligned_cols=32 Identities=22% Similarity=0.264 Sum_probs=25.2
Q ss_pred HHHhhhhHHHhcCCCCHHHHHHHHHHHHHHHH
Q 017243 337 LVHKHLGDFVSTGCITAKQASLANEQLRSLYS 368 (375)
Q Consensus 337 ~I~~~~~~fl~~g~ls~~q~~~l~~~i~~l~~ 368 (375)
.+.+-..+++..|.|+|+.+..|-..+.....
T Consensus 14 aL~dtLDeli~~~~I~p~La~kVL~~FDksi~ 45 (49)
T PF02268_consen 14 ALTDTLDELIQEGKITPQLAMKVLEQFDKSIN 45 (49)
T ss_dssp HHHHHHHHHHHTTSS-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence 46677888999999999998888887776544
No 60
>COG1902 NemA NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion]
Probab=23.02 E-value=32 Score=33.61 Aligned_cols=61 Identities=18% Similarity=0.258 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHcccccccccCCcccccccccccc--cccccccchHHHHHHHHHHHHHhhcCCCCcc
Q 017243 161 ATADGIEECRKLCGGHGYLCSSGLPELFAVYVPAC--TYEGDNIVLLLQVARFLMKTVSQLGYGNMPV 226 (375)
Q Consensus 161 ~~~~~~~~~r~~~GG~G~~~~~~l~~~~~d~~~~~--t~EGdn~Vl~~~iar~ll~~~~~~~~~~~~~ 226 (375)
.|.++--+..|+||+|||+-.. ++....-.+ -|+|+ -==+.....++++..+++.....|.
T Consensus 157 rA~~AGFDgVEIH~AhGYLi~q----Flsp~tN~RtD~YGGS-lENR~Rf~~EVv~aVr~~vg~~~~v 219 (363)
T COG1902 157 RAKEAGFDGVEIHGAHGYLLSQ----FLSPLTNKRTDEYGGS-LENRARFLLEVVDAVREAVGADFPV 219 (363)
T ss_pred HHHHcCCCEEEEeeccchHHHH----hcCCccCCCCCccCCc-HHHHHHHHHHHHHHHHHHhCCCceE
Confidence 3444444557799999998542 333222222 38887 2235677778888888765554443
Done!