Query 017243
Match_columns 375
No_of_seqs 197 out of 1815
Neff 8.4
Searched_HMMs 29240
Date Mon Mar 25 11:17:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017243.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017243hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ddh_A Acyl-COA oxidase; beta 100.0 8E-65 2.7E-69 526.7 35.7 369 1-374 228-603 (661)
2 1w07_A Acyl-COA oxidase; oxido 100.0 1.8E-64 6E-69 524.6 37.7 371 2-374 228-600 (659)
3 2z1q_A Acyl-COA dehydrogenase; 100.0 2.8E-33 9.6E-38 286.8 27.2 297 1-341 221-524 (577)
4 3owa_A Acyl-COA dehydrogenase; 100.0 2.1E-30 7.2E-35 265.8 28.9 312 1-344 226-549 (597)
5 2uxw_A VERY-long-chain specifi 100.0 6.3E-28 2.2E-32 248.1 29.4 181 1-214 250-430 (607)
6 2jif_A Short/branched chain sp 100.0 4.5E-29 1.5E-33 245.3 15.6 182 1-216 223-404 (404)
7 1egd_A Medium chain acyl-COA d 100.0 2E-28 6.9E-33 240.1 15.5 182 1-216 213-394 (396)
8 1ukw_A Acyl-COA dehydrogenase; 100.0 3E-28 1E-32 237.5 16.3 180 1-214 199-378 (379)
9 2dvl_A Acyl-COA dehydrogenase; 100.0 2.1E-28 7.2E-33 238.0 15.1 180 1-214 193-372 (372)
10 2d29_A Acyl-COA dehydrogenase; 100.0 3.8E-28 1.3E-32 237.4 15.8 181 1-215 206-386 (387)
11 2wbi_A Acyl-COA dehydrogenase 100.0 6.1E-28 2.1E-32 239.0 17.4 187 1-219 234-423 (428)
12 1ivh_A Isovaleryl-COA dehydrog 100.0 2.3E-28 7.8E-33 239.5 14.1 182 1-216 212-393 (394)
13 3pfd_A Acyl-COA dehydrogenase; 100.0 1.9E-28 6.5E-33 240.0 13.1 181 1-214 213-393 (393)
14 1buc_A Butyryl-COA dehydrogena 100.0 4.1E-28 1.4E-32 236.8 15.4 179 1-213 204-382 (383)
15 2vig_A Short-chain specific ac 100.0 4.5E-28 1.5E-32 237.2 15.2 184 1-218 201-384 (391)
16 3mkh_A Nitroalkane oxidase; ox 100.0 8.5E-28 2.9E-32 238.6 17.2 185 1-215 231-417 (438)
17 4hr3_A Putative acyl-COA dehyd 100.0 3.1E-28 1.1E-32 240.1 13.7 185 1-217 227-413 (415)
18 1rx0_A Acyl-COA dehydrogenase 100.0 1.1E-27 3.8E-32 234.6 17.3 181 1-214 212-392 (393)
19 3nf4_A Acyl-COA dehydrogenase; 100.0 2.5E-28 8.5E-33 238.6 12.3 180 1-214 208-387 (387)
20 3r7k_A Probable acyl COA dehyd 100.0 6.3E-28 2.2E-32 237.1 14.6 178 1-212 224-401 (403)
21 3sf6_A Glutaryl-COA dehydrogen 99.9 1.1E-27 3.6E-32 235.5 15.0 179 1-214 220-398 (403)
22 3swo_A Glutaryl-COA dehydrogen 99.9 1.1E-27 3.9E-32 234.9 15.0 179 1-214 215-393 (399)
23 2pg0_A Acyl-COA dehydrogenase; 99.9 1.3E-27 4.6E-32 233.3 15.0 178 1-212 206-383 (385)
24 3ii9_A Glutaryl-COA dehydrogen 99.9 9.9E-28 3.4E-32 235.1 14.0 179 1-214 213-391 (396)
25 2ix5_A Acyl-coenzyme A oxidase 99.9 1.5E-27 5E-32 236.6 14.6 179 1-214 246-424 (436)
26 3p4t_A Putative acyl-COA dehyd 99.9 2.5E-27 8.5E-32 232.8 15.1 179 1-212 221-399 (403)
27 2eba_A Putative glutaryl-COA d 99.9 4.4E-27 1.5E-31 229.7 16.3 179 1-214 203-381 (385)
28 1siq_A GCD, glutaryl-COA dehyd 99.9 3.7E-27 1.3E-31 230.7 15.1 179 1-214 206-384 (392)
29 1r2j_A Protein FKBI; polyketid 99.9 2.7E-27 9.1E-32 229.7 12.7 181 1-214 182-363 (366)
30 3mpi_A Glutaryl-COA dehydrogen 99.9 1.2E-26 4E-31 227.5 15.2 179 1-212 203-382 (397)
31 2or0_A Hydroxylase; APC7385, r 99.9 1.3E-26 4.4E-31 228.5 13.7 198 1-214 200-401 (414)
32 2rfq_A 3-HSA hydroxylase, oxyg 99.9 2.5E-26 8.4E-31 224.9 14.1 198 1-214 183-386 (394)
33 2jbr_A P-hydroxyphenylacetate 99.9 7.8E-26 2.7E-30 223.5 12.3 199 1-214 211-414 (422)
34 3djl_A Protein AIDB; alpha hel 99.9 1.6E-25 5.6E-30 226.9 13.5 183 1-215 259-442 (541)
35 2c12_A Nitroalkane oxidase; ox 99.9 1E-24 3.6E-29 216.5 18.6 183 1-212 233-417 (439)
36 3mxl_A Nitrososynthase; flavin 99.9 1.5E-24 5.1E-29 212.2 15.4 188 1-214 204-393 (395)
37 3m9v_A FAD-dependent oxidoredu 99.9 2.8E-23 9.7E-28 206.1 13.8 189 1-215 215-405 (439)
38 2yyk_A 4-hydroxyphenylacetate- 99.7 1.1E-16 3.9E-21 159.9 14.0 173 8-212 241-422 (481)
39 1u8v_A Gamma-aminobutyrate met 99.6 4.5E-15 1.5E-19 148.6 12.5 161 11-202 255-416 (490)
40 3hwc_A Chlorophenol-4-monooxyg 99.3 6.8E-12 2.3E-16 125.7 14.0 139 11-181 251-392 (515)
41 4g5e_A 2,4,6-trichlorophenol 4 99.3 3.9E-11 1.3E-15 120.4 14.4 139 13-180 254-392 (517)
42 3owa_A Acyl-COA dehydrogenase; 76.5 14 0.00049 37.1 10.7 67 97-173 485-551 (597)
43 2uxw_A VERY-long-chain specifi 44.8 2.1E+02 0.007 28.6 12.3 68 97-175 509-576 (607)
44 3nrh_A Uncharacterized protein 43.1 18 0.0006 30.5 3.3 77 289-371 12-91 (182)
45 1nvp_D Transcription initiatio 33.0 65 0.0022 24.5 4.8 33 337-369 13-45 (108)
46 1nh2_D Transcription initiatio 30.1 77 0.0026 24.7 4.8 38 337-374 17-55 (121)
47 1bax_A M-PMV MA, M-PMV matrix 28.2 55 0.0019 24.3 3.5 37 336-372 36-72 (94)
48 2lpy_A Matrix protein P10; GAG 24.6 49 0.0017 25.9 2.8 44 327-372 28-71 (124)
No 1
>2ddh_A Acyl-COA oxidase; beta barrel, alpha UP-DOWN bundle, oxidoreductase; HET: FAD HXD; 2.07A {Rattus norvegicus} SCOP: a.29.3.2 a.29.3.2 e.6.1.2 PDB: 1is2_A*
Probab=100.00 E-value=8e-65 Score=526.68 Aligned_cols=369 Identities=43% Similarity=0.700 Sum_probs=316.0
Q ss_pred CCCCcCCCCCcCceEEeccCcccCcccccCcccccCCCceeecCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 017243 1 MKFGNGAYNTMDNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRY 80 (375)
Q Consensus 1 ~k~G~~~~~~~dng~i~Fd~vRIP~~~lL~~~~~v~~~G~~~~~~~~~~~~~~~l~~~R~~~~~~~~~~~~~al~ia~rY 80 (375)
+|+| +++.|||+|.|||||||++||||++++|+++|.|.++..++ ..+++|..+|+.+++.++|.+++|++++++|
T Consensus 228 ~k~G---l~g~~~~~v~Fd~VrVP~~~lLg~~~~v~~~G~~~~~~~~~-~~~~~l~~~R~~iaa~~~G~a~~al~~a~~y 303 (661)
T 2ddh_A 228 PKFG---YEEMDNGYLKMDNYRIPRENMLMKYAQVKPDGTYVKPLSNK-LTYGTMVFVRSFLVGNAAQSLSKACTIAIRY 303 (661)
T ss_dssp CCSS---CTTCCCEEEEESSEEEEGGGBCCSSCEECTTCCEECCC---------CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccc---CCCCcceEEEeccEEECHHHhcCcccccCCCCceeccchHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4788 99999999999999999999999999898889887754455 6788999999999999999999999999999
Q ss_pred hccccccCCCCCCCCccccccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCChhhHHHHhhhhhHHHHH
Q 017243 81 SAVRRQFGSKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTT 160 (375)
Q Consensus 81 a~~R~qfg~~~~~~e~~i~~~q~~q~~L~~~la~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~K~~~t~ 160 (375)
+..|+|||.+++++|.||++||.+|++|+|+++.+++++++..++...+++.....+.++.....+.+..++++|+++||
T Consensus 304 a~~R~qfg~~~~~~e~~i~~~q~vq~rLa~~~a~~~aar~~~~~aa~~~~~~~~~~~~g~~~~~~~~~~~aa~aK~~at~ 383 (661)
T 2ddh_A 304 SAVRRQSEIKQSEPEPQILDFQTQQYKLFPLLATAYAFHFVGRYMKETYLRINESIGQGDLSELPELHALTAGLKAFTTW 383 (661)
T ss_dssp HHHCBCSCSSTTSCCCBGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----------CCHHHHHHHHHHHHHHHHH
T ss_pred HhhCcccCCCCCCccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhhhHHHHHHHHHHHHHH
Confidence 99999999877788999999999999999999999999999999888776443333344433345789999999999999
Q ss_pred HHHHHHHHHHHHcccccccccCCcccccccccccccccccccchHHHHHHHHHHHHHhhcCCCCcchhhhhcccch-HHh
Q 017243 161 ATADGIEECRKLCGGHGYLCSSGLPELFAVYVPACTYEGDNIVLLLQVARFLMKTVSQLGYGNMPVGTTTYMGRAE-QLM 239 (375)
Q Consensus 161 ~~~~~~~~~r~~~GG~G~~~~~~l~~~~~d~~~~~t~EGdn~Vl~~~iar~ll~~~~~~~~~~~~~~~~~~l~~~~-~~~ 239 (375)
.+.+++++|+|+|||+||+.+++++++++|+++.+|+||||+|+++++|+.+++.|++..+|....+++.||.+.. ...
T Consensus 384 ~a~~~~~~a~q~~GG~G~~~~~~l~r~~rda~~~~~~eG~~~vl~~~iar~lL~~~~~~~~~~~~~~~~~~l~~~~~~~~ 463 (661)
T 2ddh_A 384 TANAGIEECRMACGGHGYSHSSGIPNIYVTFTPACTFEGENTVMMLQTARFLMKIYDQVRSGKLVGGMVSYLNDLPSQRI 463 (661)
T ss_dssp HHHHHHHHHHHHTTHHHHSGGGSHHHHHHHHGGGGTSSSCHHHHHHHHHHHHHHHHHHHHHTCCCCGGGGGGGGCCC---
T ss_pred HHHHHHHHHHHHhCcccccccCcHHHHHHhcceeeEecCchHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHhhhhhhc
Confidence 9999999999999999999999999999999999999999999999999999999988766665567889997643 111
Q ss_pred hhcC--CCccccccCCHHHHHHHHHHHHHHHHHHHHHHHhh----ccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017243 240 QCHC--GVQKAEDWLNPSAILEAFEARAIRMSVACAQNLSK----FTNQEEGFAELAADLVEAAVAHCQLIVVSKFIEKL 313 (375)
Q Consensus 240 ~~~~--~~~~~~~~~~~~~l~~~~~~r~~~l~~~~~~~l~~----~~~~~~~~n~~~~~~~~la~A~~~~~~l~~F~~~v 313 (375)
...+ ...+..++.|+++++++|++|+.+++..+++++++ +++.+++||+++++++++|+||+++++++.|++.|
T Consensus 464 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~g~~~~~a~n~~~~~~~~~a~a~~~~~~~~~f~~~~ 543 (661)
T 2ddh_A 464 QPQQVAVWPTMVDINSLEGLTEAYKLRAARLVEIAAKNLQTHVSHRKSKEVAWNLTSVDLVRASEAHCHYVVVKVFSDKL 543 (661)
T ss_dssp -----------CCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHG
T ss_pred cccccccccchhhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111 11345789999999999999999999999888743 45678999999999999999999999999999999
Q ss_pred hccCCCCChHHHHHHHHHHHHHHHHHhhhhHHHhcCCCCHHHHHHHHHHHHHHHHhhcccC
Q 017243 314 QQDIPGKGVKPILEILCHIYALHLVHKHLGDFVSTGCITAKQASLANEQLRSLYSQVFTCV 374 (375)
Q Consensus 314 ~~~~~~~~~~~vL~~L~~LyaL~~I~~~~~~fl~~g~ls~~q~~~l~~~i~~l~~~lrp~~ 374 (375)
++ ++++++++||.+||+||+|+.|++|++||+++|+||+++++.|++.|.+||.+|||++
T Consensus 544 ~~-~~~~~~~~~L~~l~~L~~l~~i~~~~~~~l~~~~~s~~~~~~~~~~~~~l~~~lrp~a 603 (661)
T 2ddh_A 544 PK-IQDKAVQAVLRNLCLLYSLYGISQKGGDFLEGSIITGAQLSQVNARILELLTLIRPNA 603 (661)
T ss_dssp GG-CSSHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTSSCHHHHHHHHHHHHHHHHHHGGGH
T ss_pred Hh-CCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 87 7788999999999999999999999999999999999999999999999999999986
No 2
>1w07_A Acyl-COA oxidase; oxidoreductase, peroxisomal beta-oxidation, FAD cofactor; HET: FAD; 2.0A {Arabidopsis thaliana} SCOP: a.29.3.2 a.29.3.2 e.6.1.2 PDB: 2fon_A*
Probab=100.00 E-value=1.8e-64 Score=524.63 Aligned_cols=371 Identities=81% Similarity=1.249 Sum_probs=330.3
Q ss_pred CCCcCCCCCcCceEEeccCcccCcccccCcccccCCCceeecC-CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 017243 2 KFGNGAYNTMDNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQS-NVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRY 80 (375)
Q Consensus 2 k~G~~~~~~~dng~i~Fd~vRIP~~~lL~~~~~v~~~G~~~~~-~~~~~~~~~~l~~~R~~~~~~~~~~~~~al~ia~rY 80 (375)
|+|++++++.+||.|.|||||||+++|||++++|+++|.+..+ ++++ ..+.+|..+|+.+++.++|.+++|++++++|
T Consensus 228 ~~G~~~~~g~~~~~v~fd~VrVP~~~lLg~~~~v~~~g~~~~~~~~~~-~~~~~l~~~R~~~aa~~~G~a~~al~~a~~y 306 (659)
T 1w07_A 228 KMGNGAYNSMDNGFLMFDHVRIPRDQMLMRLSKVTREGEYVPSDVPKQ-LVYGTMVYVRQTIVADASNALSRAVCIATRY 306 (659)
T ss_dssp BSSSSGGGGSCCEEEEESSEEEEGGGBCCSSEEECTTCCEEECSSCGG-GCTTTTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccccccCCCCceEEEeccEEECHHHhcCCcCccCCCCceecCCccHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4443448999999999999999999999999999888987653 3345 5678889999999999999999999999999
Q ss_pred hccccccCCCCCCCCccccccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCChhhHHHHhhhhhHHHHH
Q 017243 81 SAVRRQFGSKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTT 160 (375)
Q Consensus 81 a~~R~qfg~~~~~~e~~i~~~q~~q~~L~~~la~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~K~~~t~ 160 (375)
+..|+|||.+++++|.||++||.+|++|+|+++.+++++++..++...+++....++.++.....+.+..++++|+++||
T Consensus 307 a~~R~qfg~~~~~~e~pi~~~q~vq~rLa~~~a~~~a~~~~~~~aa~~~~~~~~~~~~g~~~~~~~~~~~~a~aK~~at~ 386 (659)
T 1w07_A 307 SAVRRQFGAHNGGIETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTERLAASDFATLPEAHACTAGLKSLTTT 386 (659)
T ss_dssp HHHCBCSCC---CCCCBGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCCTTHHHHHHHHHHHHHHHHH
T ss_pred HhcCcccCCCCCCcccchhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCChhhhhhHHHHHHHHHHHHHH
Confidence 99999999877778999999999999999999999999999999988887665555555543445789999999999999
Q ss_pred HHHHHHHHHHHHcccccccccCCcccccccccccccccccccchHHHHHHHHHHHHHhhcCCCCcchhhhhcccchHHhh
Q 017243 161 ATADGIEECRKLCGGHGYLCSSGLPELFAVYVPACTYEGDNIVLLLQVARFLMKTVSQLGYGNMPVGTTTYMGRAEQLMQ 240 (375)
Q Consensus 161 ~~~~~~~~~r~~~GG~G~~~~~~l~~~~~d~~~~~t~EGdn~Vl~~~iar~ll~~~~~~~~~~~~~~~~~~l~~~~~~~~ 240 (375)
.+.+++++|+|+|||+||+.+++++++++|+++.+|+||+|+|+++++|+.+++.+++..+|.++.+++.||........
T Consensus 387 ~a~~~~~~a~q~~GG~G~~~~~~l~r~~rda~~~~~~eG~~~v~~~~iar~lL~~~~~~~~~~~~~~~~~~l~~~~~~~~ 466 (659)
T 1w07_A 387 ATADGIEECRKLCGGHGYLWCSGLPELFAVYVPACTYEGDNVVLQLQVARFLMKTVAQLGSGKVPVGTTAYMGRAAHLLQ 466 (659)
T ss_dssp HHHHHHHHHHHTTGGGGGBGGGSHHHHHHHHGGGGTTTSCHHHHHHHHHHHHHHHHTTTTTSCCCCGGGGGGGGHHHHTS
T ss_pred HHHHHHHHHHHHhcCcccccccCHHHHHHhcceeEEEeCChHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHhhhhhhc
Confidence 99999999999999999999999999999999999999999999999999999999887777777779999986544433
Q ss_pred hcCCCccccccCCHHHHHHHHHHHHHHHHHHHHHHHhhccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC-C
Q 017243 241 CHCGVQKAEDWLNPSAILEAFEARAIRMSVACAQNLSKFTNQEEGFAELAADLVEAAVAHCQLIVVSKFIEKLQQDIP-G 319 (375)
Q Consensus 241 ~~~~~~~~~~~~~~~~l~~~~~~r~~~l~~~~~~~l~~~~~~~~~~n~~~~~~~~la~A~~~~~~l~~F~~~v~~~~~-~ 319 (375)
.+....+..++.|+++++++|++|+.+++..+++++++.++.+++||+++++++++|+||+++++++.|++.|++ ++ +
T Consensus 467 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~a~a~~~~~~~~~f~~~~~~-~~~~ 545 (659)
T 1w07_A 467 CRSGVQKAEDWLNPDVVLEAFEARALRMAVTCAKNLSKFENQEQGFQELLADLVEAAIAHCQLIVVSKFIAKLEQ-DIGG 545 (659)
T ss_dssp CCCCCCSGGGGGCHHHHHHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHTTS-CCCS
T ss_pred cccccCchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCC
Confidence 323333346899999999999999999999999999776677899999999999999999999999999999987 66 8
Q ss_pred CChHHHHHHHHHHHHHHHHHhhhhHHHhcCCCCHHHHHHHHHHHHHHHHhhcccC
Q 017243 320 KGVKPILEILCHIYALHLVHKHLGDFVSTGCITAKQASLANEQLRSLYSQVFTCV 374 (375)
Q Consensus 320 ~~~~~vL~~L~~LyaL~~I~~~~~~fl~~g~ls~~q~~~l~~~i~~l~~~lrp~~ 374 (375)
+++++||.+||+||+|+.|++|++||+++|+||++|++.|++.|.+||.+||||+
T Consensus 546 ~~~~~~l~~l~~l~~l~~i~~~~~~~l~~~~~s~~~~~~~~~~~~~l~~~lrp~a 600 (659)
T 1w07_A 546 KGVKKQLNNLCYIYALYLLHKHLGDFLSTNCITPKQASLANDQLRSLYTQVRPNA 600 (659)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHTHHHHHHTTSSCHHHHHHHHHHHHHHHHHHGGGH
T ss_pred hHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999986
No 3
>2z1q_A Acyl-COA dehydrogenase; FAD, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: FAD; 2.30A {Thermus thermophilus}
Probab=100.00 E-value=2.8e-33 Score=286.82 Aligned_cols=297 Identities=16% Similarity=0.166 Sum_probs=222.4
Q ss_pred CCCCcCCCCCcCceEEeccCcccCcccccCcccccCCCceeecCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 017243 1 MKFGNGAYNTMDNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRY 80 (375)
Q Consensus 1 ~k~G~~~~~~~dng~i~Fd~vRIP~~~lL~~~~~v~~~G~~~~~~~~~~~~~~~l~~~R~~~~~~~~~~~~~al~ia~rY 80 (375)
+|+| +++.+++.|.||||+||.+++||+.+ +| ++ ..+..|..+|+.+++.++|.++++++++++|
T Consensus 221 ~~~G---~~~~~~~~v~fddv~VP~~~llg~~g----~g-------~~-~~~~~l~~~R~~~aa~~~G~a~~al~~a~~y 285 (577)
T 2z1q_A 221 KKMG---IKASSTRQVILEDVKVPVENVLGEIG----KG-------HK-IAFNVLNVGRYKLGAGAVGGAKRALELSAQY 285 (577)
T ss_dssp CBSS---CTTSCEEEEEEEEEEEEGGGEESCTT----CT-------HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCC---CCCCceeEEEecceeccHHHccCCCC----ch-------HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4788 99999999999999999999998532 23 55 6788899999999999999999999999999
Q ss_pred hccccccCCCCCCCCccccccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCC------hhhHHHHhhhh
Q 017243 81 SAVRRQFGSKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFST------LPEAHACTAGL 154 (375)
Q Consensus 81 a~~R~qfg~~~~~~e~~i~~~q~~q~~L~~~la~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~s~~ 154 (375)
+..|+|||. ||.+||.+|++|+++.+.+++++.+..++....+... . ++... ..+.+..++++
T Consensus 286 a~~R~qfg~-------pi~~~q~vq~~La~~~~~~~aar~~~~~aa~~~d~~~---~-~~~~~~~~~~~~~~~~~~~a~a 354 (577)
T 2z1q_A 286 ATQRVQFGR-------PIGRFGLIQQKLGEMASRIYAAESAVYRTVGLIDEAL---L-GKKGPEAVMAGIEEYAVEASII 354 (577)
T ss_dssp HHHCBCSSS-------BGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---T-TCCSHHHHHHHHHTTHHHHHHH
T ss_pred HHhCccCCC-------chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---c-ccccchhhhhcchhhHHHHHHH
Confidence 999999998 9999999999999999999999999887766654321 0 11100 12456789999
Q ss_pred hHHHHHHHHHHHHHHHHHcccccccccCCcccccccccccccccccccchHHHHHHHHHHHHHhhcCCCCcchhhhhccc
Q 017243 155 KSLTTTATADGIEECRKLCGGHGYLCSSGLPELFAVYVPACTYEGDNIVLLLQVARFLMKTVSQLGYGNMPVGTTTYMGR 234 (375)
Q Consensus 155 K~~~t~~~~~~~~~~r~~~GG~G~~~~~~l~~~~~d~~~~~t~EGdn~Vl~~~iar~ll~~~~~~~~~~~~~~~~~~l~~ 234 (375)
|+++|+.+.+++++|+|+|||+||+.++++++++||+++.+|+||+|+|++.+|++.+++.+.+ +. .+...++.+
T Consensus 355 K~~ase~a~~v~~~a~qi~GG~G~~~e~~l~r~~Rda~~~~i~eGt~~i~~~~ia~~~l~~~~~---~~--l~~~~~~~~ 429 (577)
T 2z1q_A 355 KVLGSEVLDYVVDEGVQIHGGYGYSQEYPIERAYRDARINRIFEGTNEINRLLIPGMLLRRALK---GQ--LPLMQAAQR 429 (577)
T ss_dssp HHHHHHHHHHHHHHHHHHHGGGGGBTTSHHHHHHHHHGGGGTTTSCHHHHHHHTTGGGSCC-------------------
T ss_pred HHHHHHHHHHHHHHHHHHhCCeeecCCChHHHHHhhCcceeeeCcHHHHHHHHHHHHHHHHHhh---cC--CcHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999998876432 11 111234443
Q ss_pred ch-HHhhhcCCCccccccCCHHHHHHHHHHHHHHHHHHHHHHHhhccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017243 235 AE-QLMQCHCGVQKAEDWLNPSAILEAFEARAIRMSVACAQNLSKFTNQEEGFAELAADLVEAAVAHCQLIVVSKFIEKL 313 (375)
Q Consensus 235 ~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~r~~~l~~~~~~~l~~~~~~~~~~n~~~~~~~~la~A~~~~~~l~~F~~~v 313 (375)
.. .+.+ +.. ...+.+...+++.+..+....+..+..++.+.... -...+..+|++|++.|++..|+..+
T Consensus 430 ~~~~~~~---~~~-~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~------~q~~l~~lad~~~~~~~~~~~l~r~ 499 (577)
T 2z1q_A 430 LQKELLE---PSF-EEPEDLELHQVQNLKKLALMVAGLAVQKYGQGVEE------EQEVLGAVADILIDAYAAESALLRA 499 (577)
T ss_dssp -----------------CCHHHHHHHHHHHHHHHHHHHHHHHHGGGGGG------CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcC---CCC-ChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22 1111 001 22344455667777777777666666666443211 1357899999999999999999999
Q ss_pred hccCCCCChHHHHHHHHHHHHHHHHHhh
Q 017243 314 QQDIPGKGVKPILEILCHIYALHLVHKH 341 (375)
Q Consensus 314 ~~~~~~~~~~~vL~~L~~LyaL~~I~~~ 341 (375)
++. .+. +..|.+++..+++..|+..
T Consensus 500 ~~~--~~~-~~~l~~~~~~~~~~~~~~~ 524 (577)
T 2z1q_A 500 RRL--GGL-APVLARIYLAQALDRAQAG 524 (577)
T ss_dssp HHH--CTT-HHHHHHHHHHHHHHHHHHH
T ss_pred Hhc--cCc-HHHHHHHHHHHHHHHHHHH
Confidence 874 233 5555556666667777777
No 4
>3owa_A Acyl-COA dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-structure, beta-barrel; HET: MSE FAD 1PE; 1.97A {Bacillus anthracis}
Probab=99.98 E-value=2.1e-30 Score=265.84 Aligned_cols=312 Identities=15% Similarity=0.188 Sum_probs=216.5
Q ss_pred CCCCcCCCCCcCceEEeccCcccCcccccCcccccCCCceeecCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 017243 1 MKFGNGAYNTMDNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRY 80 (375)
Q Consensus 1 ~k~G~~~~~~~dng~i~Fd~vRIP~~~lL~~~~~v~~~G~~~~~~~~~~~~~~~l~~~R~~~~~~~~~~~~~al~ia~rY 80 (375)
+|+| +++.+++.|.||||+||.+++||+.+ +| +. ..+..+..+|+.+++.++|.++++++.+++|
T Consensus 226 ~~~G---lrgs~t~~v~fddV~VP~~~lLG~~g----~G-------~~-~~~~~l~~~R~~~aa~~lG~a~~al~~a~~y 290 (597)
T 3owa_A 226 KKMG---IKCSSTRTLILEDALVPKENLLGEIG----KG-------HI-IAFNILNIGRYKLGVGTVGSAKRAVEISAQY 290 (597)
T ss_dssp CBSS---CTTSCEEEEEEEEEEEEGGGEESSTT----CH-------HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccc---CCCCCceEEEEeceeecHHHhcCccc----ch-------HH-HHHHhhHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4789 99999999999999999999998632 23 45 6788899999999999999999999999999
Q ss_pred hccccccCCCCCCCCccccccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC--CC-----ChhhHHHHhhh
Q 017243 81 SAVRRQFGSKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQAND--FS-----TLPEAHACTAG 153 (375)
Q Consensus 81 a~~R~qfg~~~~~~e~~i~~~q~~q~~L~~~la~~~a~~~~~~~~~~~~~~~~~~~~~~~--~~-----~~~~~~~~~s~ 153 (375)
+..|+|||. ||.+||.+|++|++|.+.+++.+.+..++.+.+++........+ .. ...+.+..+++
T Consensus 291 a~~R~qfG~-------pi~~~q~vq~~LA~m~~~~~aar~l~~~aa~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 363 (597)
T 3owa_A 291 ANQRQQFKQ-------PIARFPLIQEKLANMAAKTYAAESSVYRTVGLFESRMSTLSEEEVKDGKAVAASIAEYAIECSL 363 (597)
T ss_dssp HHHCEETTE-------EGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHCHHHHHHHHTTHHHHHH
T ss_pred HHhCeeCCc-------cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccccchhhhhhhhhHHHHHHHHH
Confidence 999999998 99999999999999999999999998888776654321000000 00 00134677899
Q ss_pred hhHHHHHHHHHHHHHHHHHcccccccccCCcccccccccccccccccccchHHHHHHHHHHHHHhhcCCCCcchhhhhcc
Q 017243 154 LKSLTTTATADGIEECRKLCGGHGYLCSSGLPELFAVYVPACTYEGDNIVLLLQVARFLMKTVSQLGYGNMPVGTTTYMG 233 (375)
Q Consensus 154 ~K~~~t~~~~~~~~~~r~~~GG~G~~~~~~l~~~~~d~~~~~t~EGdn~Vl~~~iar~ll~~~~~~~~~~~~~~~~~~l~ 233 (375)
+|+++++.+.+++++|+|+|||+||+.++++++++||+++..|+||+|+|+++.|++.+++.+.+ |+.|.- .-+.
T Consensus 364 aK~~ase~a~~v~~~a~qi~GG~G~~~e~~ler~~RDar~~~i~eGt~ei~r~~Ia~~ll~~~~k---~~~~~~--~~~~ 438 (597)
T 3owa_A 364 NKVFGSEVLDYTVDEGVQIHGGYGFMAEYEIERMYRDSRINRIFEGTNEINRLIVPGTFLRKAMK---GELPLL--QKAQ 438 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHGGGGGBTTSHHHHHHHHHGGGGTSSSCHHHHHHHHHHHHHHHHHT---TSSCHH--HHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhCCccccccChHHHHHHHhhhhheeCcHHHHHHHHHHHHHHHHHhc---CCcchh--HHHH
Confidence 99999999999999999999999999999999999999999999999999999999999998753 333211 0011
Q ss_pred cchHHhhhcCCCccccccCCHHHHHHHHHHHHHHHHHHHHHHHhhccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017243 234 RAEQLMQCHCGVQKAEDWLNPSAILEAFEARAIRMSVACAQNLSKFTNQEEGFAELAADLVEAAVAHCQLIVVSKFIEKL 313 (375)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~r~~~l~~~~~~~l~~~~~~~~~~n~~~~~~~~la~A~~~~~~l~~F~~~v 313 (375)
..........+.......+.. -..+++. +.+++..+...+... ....+.+-+..+..+|+.-++.|++++.+-..
T Consensus 439 ~~~~~~~~~~~~~~~~~~l~~--~~~~~~~-~~~~~~~~~~~~~~~--~~~~~~~~q~~l~~~ad~~~~~y~~~~~~~r~ 513 (597)
T 3owa_A 439 KLQEELMMMMPEEVGDEPLAL--QKYLVNN-AKKIGLMVAGLAAQK--YGKALDKEQEILVNIADIVSNLYAMESAVLRT 513 (597)
T ss_dssp HHHHHHTTC---CCCSSTTHH--HHHHHHH-HHHHHHHHHHHHHHH--HGGGGGGCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhcCCCccccccHHH--HHHHHHH-HHHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111111110111111111111 1222221 122222222222111 11223334667889999999999999998887
Q ss_pred hccC-C-CCCh---HHHHHHHHHHHHHHHHHhhhhH
Q 017243 314 QQDI-P-GKGV---KPILEILCHIYALHLVHKHLGD 344 (375)
Q Consensus 314 ~~~~-~-~~~~---~~vL~~L~~LyaL~~I~~~~~~ 344 (375)
++.. . ..+. ...|.+++..-+...|+...-.
T Consensus 514 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 549 (597)
T 3owa_A 514 EKAIKTTGLEKNKQKVLYTEVFCQEAFNEIEAHAKE 549 (597)
T ss_dssp HHHHHHHCSGGGHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6531 1 2222 2334444444466667766433
No 5
>2uxw_A VERY-long-chain specific acyl-COA dehydrogenase; fatty acid metabolism, transit peptide, disease mutation, LI metabolism, coenzyme A dehydrogenase; HET: FAD TH3; 1.45A {Homo sapiens} PDB: 3b96_A*
Probab=99.96 E-value=6.3e-28 Score=248.05 Aligned_cols=181 Identities=19% Similarity=0.249 Sum_probs=161.0
Q ss_pred CCCCcCCCCCcCceEEeccCcccCcccccCcccccCCCceeecCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 017243 1 MKFGNGAYNTMDNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRY 80 (375)
Q Consensus 1 ~k~G~~~~~~~dng~i~Fd~vRIP~~~lL~~~~~v~~~G~~~~~~~~~~~~~~~l~~~R~~~~~~~~~~~~~al~ia~rY 80 (375)
+|+| +++.+++.+.||||+||.+++||+.+ +| ++ .++..|..+|+.+++.++|.++++++.+++|
T Consensus 250 ~~~G---~rg~~t~~v~fddv~VP~~~llG~~g----~G-------~~-~~~~~l~~~Rl~~aa~~~G~a~~al~~a~~y 314 (607)
T 2uxw_A 250 KKMG---IKASNTAEVFFDGVRVPSENVLGEVG----SG-------FK-VAMHILNNGRFGMAAALAGTMRGIIAKAVDH 314 (607)
T ss_dssp CCSS---CTTSCEEEEEEEEEEEEGGGEESSTT----CH-------HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccC---CCCCCeeEEEeccEEecHHHhcCCCC----ch-------HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4789 99999999999999999999998532 23 55 6778889999999999999999999999999
Q ss_pred hccccccCCCCCCCCccccccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCChhhHHHHhhhhhHHHHH
Q 017243 81 SAVRRQFGSKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTT 160 (375)
Q Consensus 81 a~~R~qfg~~~~~~e~~i~~~q~~q~~L~~~la~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~K~~~t~ 160 (375)
+..|+|||. ||++||.+|++|++|.+.+++.+.+..++.... +.+. .+.+..++++|+++|+
T Consensus 315 a~~R~qfG~-------pi~~~~~vq~~La~~~~~~eaaral~~~aa~~~-------d~~~----~~~~~~~~~aK~~~se 376 (607)
T 2uxw_A 315 ATNRTQFGE-------KIHNFGLIQEKLARMVMLQYVTESMAYMVSANM-------DQGA----TDFQIEAAISKIFGSE 376 (607)
T ss_dssp HHHCEETTE-------EGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HTTC----SCCHHHHHHHHHHHHH
T ss_pred HHhccccCC-------chhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------hcCC----ccHHHHHHHHHHHHHH
Confidence 999999998 999999999999999999999998876665443 2222 2345678999999999
Q ss_pred HHHHHHHHHHHHcccccccccCCcccccccccccccccccccchHHHHHHHHHH
Q 017243 161 ATADGIEECRKLCGGHGYLCSSGLPELFAVYVPACTYEGDNIVLLLQVARFLMK 214 (375)
Q Consensus 161 ~~~~~~~~~r~~~GG~G~~~~~~l~~~~~d~~~~~t~EGdn~Vl~~~iar~ll~ 214 (375)
.+.+++++|+|+|||+||+.++++++++||+++..|+||+|+|++..|+...+.
T Consensus 377 ~a~~v~~~a~qv~GG~G~~~e~~l~r~~Rda~~~~i~eGt~~i~~~~ia~~glq 430 (607)
T 2uxw_A 377 AAWKVTDECIQIMGGMGFMKEPGVERVLRDLRIFRIFEGTNDILRLFVALQGCM 430 (607)
T ss_dssp HHHHHHHHHHHHHTHHHHSSTTSHHHHHHHHGGGGTSSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCccccCccHHHHHHHhcccceeeCChHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999876654
No 6
>2jif_A Short/branched chain specific acyl-COA dehydrogen; mitochondrion, oxidoreductase, transit peptide, fatty acid metabolism, FAD, flavoprotein; HET: FAD COS; 2.0A {Homo sapiens}
Probab=99.96 E-value=4.5e-29 Score=245.34 Aligned_cols=182 Identities=20% Similarity=0.256 Sum_probs=161.9
Q ss_pred CCCCcCCCCCcCceEEeccCcccCcccccCcccccCCCceeecCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 017243 1 MKFGNGAYNTMDNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRY 80 (375)
Q Consensus 1 ~k~G~~~~~~~dng~i~Fd~vRIP~~~lL~~~~~v~~~G~~~~~~~~~~~~~~~l~~~R~~~~~~~~~~~~~al~ia~rY 80 (375)
+|+| +++.+++.|.||||+||.+++||+.+ +| ++ ..+..+..+|+.+++.++|.++++++.+++|
T Consensus 223 ~~~G---~~~~~~~~v~fd~v~Vp~~~~lg~~g----~g-------~~-~~~~~l~~~r~~~aa~~~G~a~~al~~a~~y 287 (404)
T 2jif_A 223 NKLG---LRASSTCPLTFENVKVPEANILGQIG----HG-------YK-YAIGSLNEGRIGIAAQMLGLAQGCFDYTIPY 287 (404)
T ss_dssp CBSS---CTTSCEEEEEEEEEEEEGGGEESSTT----CH-------HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccc---CCCCceEEEEEccEEECHHHcCCCCC----ch-------HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4688 99999999999999999999998532 23 44 6677888999999999999999999999999
Q ss_pred hccccccCCCCCCCCccccccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCChhhHHHHhhhhhHHHHH
Q 017243 81 SAVRRQFGSKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTT 160 (375)
Q Consensus 81 a~~R~qfg~~~~~~e~~i~~~q~~q~~L~~~la~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~K~~~t~ 160 (375)
+..|+|||. ||.+||.+|++|+++.+.+++.+.+..++.+.. +.++ +....++++|+++++
T Consensus 288 a~~R~~fG~-------~i~~~q~vq~~la~~~~~~~aar~~~~~aa~~~-------~~g~-----~~~~~~~~aK~~a~e 348 (404)
T 2jif_A 288 IKERIQFGK-------RLFDFQGLQHQVAHVATQLEAARLLTYNAARLL-------EAGK-----PFIKEASMAKYYASE 348 (404)
T ss_dssp HHHCEETTE-------EGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HTTC-----CCHHHHHHHHHHHHH
T ss_pred HHhCcccCC-------cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HCCC-----ccHHHHHHHHHHHHH
Confidence 999999998 999999999999999999999998877665443 2332 224568999999999
Q ss_pred HHHHHHHHHHHHcccccccccCCcccccccccccccccccccchHHHHHHHHHHHH
Q 017243 161 ATADGIEECRKLCGGHGYLCSSGLPELFAVYVPACTYEGDNIVLLLQVARFLMKTV 216 (375)
Q Consensus 161 ~~~~~~~~~r~~~GG~G~~~~~~l~~~~~d~~~~~t~EGdn~Vl~~~iar~ll~~~ 216 (375)
.+.++++.|+|+|||+||+.++++++++||+++..|+||+++|++..||+.+++.|
T Consensus 349 ~a~~v~~~a~q~~Gg~G~~~~~~~~r~~Rda~~~~i~~Gt~ei~~~~ia~~~~~~~ 404 (404)
T 2jif_A 349 IAGQTTSKCIEWMGGVGYTKDYPVEKYFRDAKIGTIYEGASNIQLNTIAKHIDAEY 404 (404)
T ss_dssp HHHHHHHHHHHHHGGGGGBTTSSHHHHHHHHGGGGTTTSCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhcCcceecCCCcHHHHHhhccceeecCCHHHHHHHHHHHHHhhcC
Confidence 99999999999999999999999999999999999999999999999999998753
No 7
>1egd_A Medium chain acyl-COA dehydrogenase; flavoprotein, electron transfer; HET: FAD; 2.40A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1 PDB: 1egc_A* 1ege_A* 1t9g_A* 2a1t_A* 1udy_A* 3mdd_A* 3mde_A*
Probab=99.96 E-value=2e-28 Score=240.05 Aligned_cols=182 Identities=19% Similarity=0.253 Sum_probs=162.6
Q ss_pred CCCCcCCCCCcCceEEeccCcccCcccccCcccccCCCceeecCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 017243 1 MKFGNGAYNTMDNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRY 80 (375)
Q Consensus 1 ~k~G~~~~~~~dng~i~Fd~vRIP~~~lL~~~~~v~~~G~~~~~~~~~~~~~~~l~~~R~~~~~~~~~~~~~al~ia~rY 80 (375)
+|+| +++.+++.|.||||+||.+++||..+ +| +. ..+..+..+|+.+++.++|.++++++.+++|
T Consensus 213 ~~~G---~~~~~~~~v~fd~v~Vp~~~~lg~~~----~g-------~~-~~~~~l~~~r~~~aa~~~G~a~~al~~a~~y 277 (396)
T 1egd_A 213 LNMG---QRCSDTRGIVFEDVKVPKENVLIGDG----AG-------FK-VAMGAFDKERPVVAAGAVGLAQRALDEATKY 277 (396)
T ss_dssp CBSS---CTTSCEEEEEEEEEEEEGGGBSSSTT----BH-------HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccc---ccCCCeeEEEECcEEECHHHcCCCCC----cc-------HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4788 99999999999999999999998521 23 44 6677888999999999999999999999999
Q ss_pred hccccccCCCCCCCCccccccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCChhhHHHHhhhhhHHHHH
Q 017243 81 SAVRRQFGSKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTT 160 (375)
Q Consensus 81 a~~R~qfg~~~~~~e~~i~~~q~~q~~L~~~la~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~K~~~t~ 160 (375)
+..|+|||. ||.++|.+|++|+++.+..++.+.+..++.+.++ .++ +....++++|+++++
T Consensus 278 a~~R~~fG~-------~i~~~q~vq~~la~~~~~~~aar~~~~~aa~~~~-------~g~-----~~~~~~~~aK~~a~~ 338 (396)
T 1egd_A 278 ALERKTFGK-------LLVEHQAISFMLAEMAMKVELARMSYQRAAWEVD-------SGR-----RNTYYASIAKAFAGD 338 (396)
T ss_dssp HTTCEETTE-------EGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------TTS-----CCHHHHHHHHHHHHH
T ss_pred HhcCccCCc-------chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------CCC-----cchHHHHHHHHHHHH
Confidence 999999998 9999999999999999999999998777665442 332 234568999999999
Q ss_pred HHHHHHHHHHHHcccccccccCCcccccccccccccccccccchHHHHHHHHHHHH
Q 017243 161 ATADGIEECRKLCGGHGYLCSSGLPELFAVYVPACTYEGDNIVLLLQVARFLMKTV 216 (375)
Q Consensus 161 ~~~~~~~~~r~~~GG~G~~~~~~l~~~~~d~~~~~t~EGdn~Vl~~~iar~ll~~~ 216 (375)
.+.++++.|+|+|||+||+.++++++++||++...|++|+++|++..|++.+++.|
T Consensus 339 ~a~~~~~~a~q~~Gg~g~~~~~~l~r~~Rda~~~~i~~Gt~~i~~~~ia~~~l~~~ 394 (396)
T 1egd_A 339 IANQLATDAVQILGGNGFNTEYPVEKLMRDAKIYQIYGGTSQIQRLIVAREHIDKY 394 (396)
T ss_dssp HHHHHHHHHHHHHGGGTTBTTSSHHHHHHHHGGGGTTTSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhCcccccCCChHHHHHHHhhCeeecCCHHHHHHHHHHHHHHhhc
Confidence 99999999999999999999999999999999999999999999999999998765
No 8
>1ukw_A Acyl-COA dehydrogenase; oxidoreductase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: FAD; 2.40A {Thermus thermophilus} SCOP: a.29.3.1 e.6.1.1
Probab=99.95 E-value=3e-28 Score=237.50 Aligned_cols=180 Identities=22% Similarity=0.313 Sum_probs=161.3
Q ss_pred CCCCcCCCCCcCceEEeccCcccCcccccCcccccCCCceeecCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 017243 1 MKFGNGAYNTMDNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRY 80 (375)
Q Consensus 1 ~k~G~~~~~~~dng~i~Fd~vRIP~~~lL~~~~~v~~~G~~~~~~~~~~~~~~~l~~~R~~~~~~~~~~~~~al~ia~rY 80 (375)
+|+| +++.+++.|.||||+||.+++||+.+ +| +. ..+..+..+|+.+++.++|.++++++.+++|
T Consensus 199 ~~~G---~~~~~~~~v~fd~v~Vp~~~~lg~~~----~g-------~~-~~~~~l~~~r~~~aa~~~G~a~~al~~~~~y 263 (379)
T 1ukw_A 199 GKMG---QRASGTYELVFEDVKVPVENRLGEEG----EG-------FK-IAMQTLNKTRIPVAAGSVGVARRALDEARKY 263 (379)
T ss_dssp CCSS---CTTSCEEEEEEEEEEEEGGGEESCTT----CH-------HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccc---CCCCCeeEEEEeeEEecHHhcCCCCC----ch-------HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4788 99999999999999999999998532 23 44 6677888999999999999999999999999
Q ss_pred hccccccCCCCCCCCccccccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCChhhHHHHhhhhhHHHHH
Q 017243 81 SAVRRQFGSKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTT 160 (375)
Q Consensus 81 a~~R~qfg~~~~~~e~~i~~~q~~q~~L~~~la~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~K~~~t~ 160 (375)
++.|+|||. ||.++|.+|++|+++.+..++.+.+..++.+.++ .++ +....++++|+++++
T Consensus 264 a~~R~~fg~-------~i~~~q~vq~~la~~~~~~~aar~~~~~aa~~~d-------~g~-----~~~~~~~~aK~~a~~ 324 (379)
T 1ukw_A 264 AKEREAFGE-------PIANFQAIQFKLVDMLIGIETARMYTYYAAWLAD-------QGL-----PHAHASAIAKAYASE 324 (379)
T ss_dssp HHHCBSSSS-------BGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HTC-----CCHHHHHHHHHHHHH
T ss_pred HHhCeeCCc-------chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------CCC-----chHHHHHHHHHHHHH
Confidence 999999998 9999999999999999999999998877765543 232 234678999999999
Q ss_pred HHHHHHHHHHHHcccccccccCCcccccccccccccccccccchHHHHHHHHHH
Q 017243 161 ATADGIEECRKLCGGHGYLCSSGLPELFAVYVPACTYEGDNIVLLLQVARFLMK 214 (375)
Q Consensus 161 ~~~~~~~~~r~~~GG~G~~~~~~l~~~~~d~~~~~t~EGdn~Vl~~~iar~ll~ 214 (375)
.+.++++.|+|+|||+||+.++++++++||++...+++|+++|++..|++.+++
T Consensus 325 ~a~~~~~~a~q~~Gg~g~~~~~~~~r~~Rda~~~~i~~Gt~~i~~~~ia~~~l~ 378 (379)
T 1ukw_A 325 IAFEAANQAIQIHGGYGYVREFPVEKLLRDVKLNQIYEGTNEIQRLIIARHILA 378 (379)
T ss_dssp HHHHHHHHHHHHHGGGGGSTTSSHHHHHHHHHGGGTTTSCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhhCCeecCCCChHHHHHHHhcCceecCCHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999999999998864
No 9
>2dvl_A Acyl-COA dehydrogenase; structural genomics, NPPSFA, national project on protein STR and functional analyses; HET: FAD; 2.50A {Thermus thermophilus}
Probab=99.95 E-value=2.1e-28 Score=237.95 Aligned_cols=180 Identities=19% Similarity=0.212 Sum_probs=161.2
Q ss_pred CCCCcCCCCCcCceEEeccCcccCcccccCcccccCCCceeecCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 017243 1 MKFGNGAYNTMDNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRY 80 (375)
Q Consensus 1 ~k~G~~~~~~~dng~i~Fd~vRIP~~~lL~~~~~v~~~G~~~~~~~~~~~~~~~l~~~R~~~~~~~~~~~~~al~ia~rY 80 (375)
+|+| +++.+++.+.||||+||.+++||..+ +| +. ..+..+..+|+.+++.++|.++++++.+++|
T Consensus 193 ~~~G---~~~~~~~~v~fd~v~Vp~~~~lg~~~----~g-------~~-~~~~~l~~~r~~~aa~~~G~a~~al~~a~~y 257 (372)
T 2dvl_A 193 EKMG---LHAAHTAEVRLEEVFVPEENLLGEEG----RG-------LA-YALAGLDSGRVGVAAQAVGIARGAFEIAKAY 257 (372)
T ss_dssp CCSS---CTTSCEEEEEEEEEEEEGGGEESSTT----CH-------HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccc---cCcCCeeEEEECcEEeCHHHcCCCCC----ch-------HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4788 99999999999999999999998532 23 44 5677888999999999999999999999999
Q ss_pred hccccccCCCCCCCCccccccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCChhhHHHHhhhhhHHHHH
Q 017243 81 SAVRRQFGSKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTT 160 (375)
Q Consensus 81 a~~R~qfg~~~~~~e~~i~~~q~~q~~L~~~la~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~K~~~t~ 160 (375)
++.|+|||. ||.+||.+|++|+++.+..++.+.+..++.+.+ +.+. +....++++|+++++
T Consensus 258 a~~R~~fg~-------~i~~~q~vq~~la~~~~~~~aar~~~~~aa~~~-------~~g~-----~~~~~~~~aK~~a~~ 318 (372)
T 2dvl_A 258 AEEREQFGK-------KLKEHQAIAFKIADMHVKIAAARALVLEAARKK-------DRGE-----RFTLEASAAKLFASA 318 (372)
T ss_dssp HHHCEETTE-------EGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HTTC-----CCHHHHHHHHHHHHH
T ss_pred HhhCcccCC-------chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hCCC-----chHHHHHHHHHHHHH
Confidence 999999998 999999999999999999999999887776544 2332 235678999999999
Q ss_pred HHHHHHHHHHHHcccccccccCCcccccccccccccccccccchHHHHHHHHHH
Q 017243 161 ATADGIEECRKLCGGHGYLCSSGLPELFAVYVPACTYEGDNIVLLLQVARFLMK 214 (375)
Q Consensus 161 ~~~~~~~~~r~~~GG~G~~~~~~l~~~~~d~~~~~t~EGdn~Vl~~~iar~ll~ 214 (375)
.+.++++.|+|+|||.||+.++++++++||++...|++|+|+|++..|++.+++
T Consensus 319 ~a~~~~~~a~q~~Gg~g~~~~~~~~r~~Rda~~~~i~~Gt~~i~~~~ia~~~l~ 372 (372)
T 2dvl_A 319 AAVEVTREAVQVLGGYGYHRDYRVERYYRDAKVTEIYEGTSEIQRLVIARELYR 372 (372)
T ss_dssp HHHHHHHHHHHHTGGGGGSGGGSHHHHHHHHHGGGTTTSCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhhcCeecCCCCcHHHHHHHhhcceecCCHHHHHHHHHHHHhhC
Confidence 999999999999999999999999999999999999999999999999998763
No 10
>2d29_A Acyl-COA dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; HET: FAD; 1.65A {Thermus thermophilus} SCOP: a.29.3.1 e.6.1.1 PDB: 1ws9_A 2cx9_A*
Probab=99.95 E-value=3.8e-28 Score=237.41 Aligned_cols=181 Identities=21% Similarity=0.186 Sum_probs=162.0
Q ss_pred CCCCcCCCCCcCceEEeccCcccCcccccCcccccCCCceeecCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 017243 1 MKFGNGAYNTMDNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRY 80 (375)
Q Consensus 1 ~k~G~~~~~~~dng~i~Fd~vRIP~~~lL~~~~~v~~~G~~~~~~~~~~~~~~~l~~~R~~~~~~~~~~~~~al~ia~rY 80 (375)
+|+| +++.+++.|.||||+||.+++||+.+ +| +. ..+..+..+|+.+++.++|.++++++.+++|
T Consensus 206 ~~~g---~~~~~~~~v~f~~v~Vp~~~~lg~~~----~g-------~~-~~~~~l~~~r~~~aa~~~G~a~~al~~a~~y 270 (387)
T 2d29_A 206 EKLG---LTASDTAQLILEDLFVPEEALLGERG----KG-------FY-DVLRVLDGGRIGIAAMAVGLGQAALDYALAY 270 (387)
T ss_dssp CCSS---CTTSCEEEEEEEEEEEEGGGEESSTT----BH-------HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccC---CCCCCeeEEEEeeEEECHHHcCCCCC----cc-------HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4788 99999999999999999999998522 23 44 6677889999999999999999999999999
Q ss_pred hccccccCCCCCCCCccccccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCChhhHHHHhhhhhHHHHH
Q 017243 81 SAVRRQFGSKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTT 160 (375)
Q Consensus 81 a~~R~qfg~~~~~~e~~i~~~q~~q~~L~~~la~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~K~~~t~ 160 (375)
+..|+|||. ||.+||.+|++|+++.+..++.+.+..++.+.++ .+. +....++++|+++++
T Consensus 271 a~~R~~fg~-------~i~~~q~vq~~la~~~~~~~aar~~~~~aa~~~~-------~g~-----~~~~~~~~aK~~a~~ 331 (387)
T 2d29_A 271 AKGREAFGR-------PIAEFEGVSFKLAEAATELEAARLLYLKAAELKD-------AGR-----PFTLEAAQAKLFASE 331 (387)
T ss_dssp HHHCEETTE-------EGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------TTC-----CCHHHHHHHHHHHHH
T ss_pred HHhCccCCc-------chHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------CCC-----CchHHHHHHHHHHHH
Confidence 999999998 9999999999999999999999998877765442 332 235678999999999
Q ss_pred HHHHHHHHHHHHcccccccccCCcccccccccccccccccccchHHHHHHHHHHH
Q 017243 161 ATADGIEECRKLCGGHGYLCSSGLPELFAVYVPACTYEGDNIVLLLQVARFLMKT 215 (375)
Q Consensus 161 ~~~~~~~~~r~~~GG~G~~~~~~l~~~~~d~~~~~t~EGdn~Vl~~~iar~ll~~ 215 (375)
.+.++++.|+|+|||.||+.++++++++||++...+++|+++|++..+++.+++.
T Consensus 332 ~a~~~~~~a~q~~Gg~g~~~~~~~~r~~Rda~~~~i~~G~~~i~~~~ia~~~l~~ 386 (387)
T 2d29_A 332 AAVKACDEAIQILGGYGYVKDYPVERYWRDARLTRIGEGTSEILKLVIARRLLEA 386 (387)
T ss_dssp HHHHHHHHHHHHHGGGGGSTTSSHHHHHHHHGGGGTTTSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCCeecCCCChHHHHHHHhhCccccCCHHHHHHHHHHHHHhhc
Confidence 9999999999999999999999999999999999999999999999999998763
No 11
>2wbi_A Acyl-COA dehydrogenase family member 11; human, phosphoprotein, oxidoreducta; HET: FAD; 2.80A {Homo sapiens}
Probab=99.95 E-value=6.1e-28 Score=239.00 Aligned_cols=187 Identities=16% Similarity=0.176 Sum_probs=166.2
Q ss_pred CCCCcCCCCCcC---ceEEeccCcccCcccccCcccccCCCceeecCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017243 1 MKFGNGAYNTMD---NGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIA 77 (375)
Q Consensus 1 ~k~G~~~~~~~d---ng~i~Fd~vRIP~~~lL~~~~~v~~~G~~~~~~~~~~~~~~~l~~~R~~~~~~~~~~~~~al~ia 77 (375)
+|+| +++.+ ++.|.||||+||.+++||+.+ +| +. ..+..+..+|+.+++.++|.++++++.+
T Consensus 234 ~~~G---~~~~~~~~~~~v~fddv~VP~~~~lg~~g----~g-------~~-~~~~~l~~~r~~~aa~~~G~a~~al~~a 298 (428)
T 2wbi_A 234 SVFG---YTDNFHGGHFEIHFNQVRVPATNLILGEG----RG-------FE-ISQGRLGPGRIHHCMRTVGLAERALQIM 298 (428)
T ss_dssp CBTT---BCCGGGCCEEEEEEEEEEEEGGGBCSCTT----CH-------HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred Cccc---cCCCCCCCeEEEEeCceEECHHHhcCCcc----ch-------HH-HHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 4788 99986 889999999999999998532 23 44 5677888999999999999999999999
Q ss_pred HHhhccccccCCCCCCCCccccccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCChhhHHHHhhhhhHH
Q 017243 78 TRYSAVRRQFGSKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSL 157 (375)
Q Consensus 78 ~rYa~~R~qfg~~~~~~e~~i~~~q~~q~~L~~~la~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~K~~ 157 (375)
++|+..|+|||. ||.++|.+|++|+++.+.+++.+.+..++.+.++.. + ..+.+..++++|++
T Consensus 299 ~~ya~~R~~fG~-------~i~~~q~vq~~la~~~~~~~aar~~~~~aa~~~d~~------g----~~~~~~~~~~aK~~ 361 (428)
T 2wbi_A 299 CERATQRIAFKK-------KLYAHEVVAHWIAESRIAIEKIRLLTLKAAHSMDTL------G----SAGAKKEIAMIKVA 361 (428)
T ss_dssp HHHHHHCEETTE-------EGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------H----HHHTHHHHHHHHHH
T ss_pred HHHHhhCcccCC-------ChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc------C----CcchHHHHHHHHHH
Confidence 999999999998 999999999999999999999999988877665431 0 02346678999999
Q ss_pred HHHHHHHHHHHHHHHcccccccccCCcccccccccccccccccccchHHHHHHHHHHHHHhh
Q 017243 158 TTTATADGIEECRKLCGGHGYLCSSGLPELFAVYVPACTYEGDNIVLLLQVARFLMKTVSQL 219 (375)
Q Consensus 158 ~t~~~~~~~~~~r~~~GG~G~~~~~~l~~~~~d~~~~~t~EGdn~Vl~~~iar~ll~~~~~~ 219 (375)
+++.+.++++.|+|+|||+||+.+++++++++|++...+++|+++|++.++++.+++.|++.
T Consensus 362 a~e~a~~v~~~a~q~~Gg~G~~~~~~~~r~~Rda~~~~i~~G~~~~~~~~ia~~~l~~~~~~ 423 (428)
T 2wbi_A 362 APRAVSKIVDWAIQVCGGAGVSQDYPLANMYAITRVLRLADGPDEVHLSAIATMELRDQAKR 423 (428)
T ss_dssp HHHHHHHHHHHHHHHTGGGGGSTTSSHHHHHHHHHHHTTTTSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCcccCCCCcHHHHHHHHhhcEecCChHHHHHHHHHHHHHHHhhhh
Confidence 99999999999999999999999999999999999999999999999999999999988653
No 12
>1ivh_A Isovaleryl-COA dehydrogenase; oxidoreductase, acyl-COA dehydrogenase, flavoprotein, isovaleric acidemia; HET: FAD COS; 2.60A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1
Probab=99.95 E-value=2.3e-28 Score=239.54 Aligned_cols=182 Identities=16% Similarity=0.164 Sum_probs=162.0
Q ss_pred CCCCcCCCCCcCceEEeccCcccCcccccCcccccCCCceeecCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 017243 1 MKFGNGAYNTMDNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRY 80 (375)
Q Consensus 1 ~k~G~~~~~~~dng~i~Fd~vRIP~~~lL~~~~~v~~~G~~~~~~~~~~~~~~~l~~~R~~~~~~~~~~~~~al~ia~rY 80 (375)
+|+| +++.+++.|.||||+||.+++||+.+ +| ++ ..+..+..+|+.+++.++|.++++++.+++|
T Consensus 212 ~~~G---~~~~~~~~v~fd~v~Vp~~~~lg~~~----~g-------~~-~~~~~l~~~r~~~aa~~~G~a~~al~~a~~y 276 (394)
T 1ivh_A 212 DKLG---MRGSNTCELIFEDCKIPAANILGHEN----KG-------VY-VLMSGLDLERLVLAGGPLGLMQAVLDHTIPY 276 (394)
T ss_dssp CBSS---CTTSCEEEEEEEEEEEEGGGEESCTT----CH-------HH-HHHHHHHHHHHHHTHHHHHHHHHHHHHHHHH
T ss_pred cccc---CCCCCeeEEEECcEEEcHHHcCCCCC----ch-------HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678 99999999999999999999998532 23 44 6677888999999999999999999999999
Q ss_pred hccccccCCCCCCCCccccccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCChhhHHHHhhhhhHHHHH
Q 017243 81 SAVRRQFGSKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTT 160 (375)
Q Consensus 81 a~~R~qfg~~~~~~e~~i~~~q~~q~~L~~~la~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~K~~~t~ 160 (375)
++.|+|||. ||.++|.+|++|+++.+..++.+.+..++.+.++ .+. +....++++|+++++
T Consensus 277 a~~R~~fg~-------~i~~~q~vq~~la~~~~~~~aar~~~~~aa~~~~-------~g~-----~~~~~~~~aK~~a~~ 337 (394)
T 1ivh_A 277 LHVREAFGQ-------KIGHFQLMQGKMADMYTRLMACRQYVYNVAKACD-------EGH-----CTAKDCAGVILYSAE 337 (394)
T ss_dssp HTTCEETTE-------EGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------TTC-----CCHHHHHHHHHHHHH
T ss_pred HHhCeeCCc-------chhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------CCC-----cchHHHHHHHHHHHH
Confidence 999999998 9999999999999999999999998777665442 232 234568999999999
Q ss_pred HHHHHHHHHHHHcccccccccCCcccccccccccccccccccchHHHHHHHHHHHH
Q 017243 161 ATADGIEECRKLCGGHGYLCSSGLPELFAVYVPACTYEGDNIVLLLQVARFLMKTV 216 (375)
Q Consensus 161 ~~~~~~~~~r~~~GG~G~~~~~~l~~~~~d~~~~~t~EGdn~Vl~~~iar~ll~~~ 216 (375)
.+.++++.|+|+|||.||+.++++++++||++...+++|+++|++..|++.+++.|
T Consensus 338 ~a~~~~~~a~q~~Gg~g~~~~~~l~r~~Rda~~~~i~~Gt~~i~~~~ia~~ll~~~ 393 (394)
T 1ivh_A 338 CATQVALDGIQCFGGNGYINDFPMGRFLRDAKLYEIGAGTSEVRRLVIGRAFNADF 393 (394)
T ss_dssp HHHHHHHHHHHHHGGGGGBTTSTHHHHHHHHHHTTTTTSCHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHhcCCccccCCchHHHHHHhcccccccCChHHHHHHHHHHHHHhhc
Confidence 99999999999999999999999999999999999999999999999999998765
No 13
>3pfd_A Acyl-COA dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: FDA; 2.10A {Mycobacterium thermoresistibile}
Probab=99.95 E-value=1.9e-28 Score=240.02 Aligned_cols=181 Identities=23% Similarity=0.239 Sum_probs=160.9
Q ss_pred CCCCcCCCCCcCceEEeccCcccCcccccCcccccCCCceeecCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 017243 1 MKFGNGAYNTMDNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRY 80 (375)
Q Consensus 1 ~k~G~~~~~~~dng~i~Fd~vRIP~~~lL~~~~~v~~~G~~~~~~~~~~~~~~~l~~~R~~~~~~~~~~~~~al~ia~rY 80 (375)
+|+| +++.+++.|.||||+||.+++||..+ +| +. ..+..+..+|+.+++.++|.++++++.+++|
T Consensus 213 ~~~G---~~~~~~~~v~fddv~Vp~~~~lg~~g----~g-------~~-~~~~~l~~~r~~~aa~~~G~a~~al~~a~~~ 277 (393)
T 3pfd_A 213 RKLG---IKGSPTTELYFENCRIPGDRIIGEPG----TG-------FK-TALATLDHTRPTIGAQAVGIAQGALDAAIAY 277 (393)
T ss_dssp CBSS---CTTSCEEEEEEEEEEEEGGGEESSTT----CH-------HH-HHHHHHHTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred Cccc---CCCCCceEEEEccEEEcHHHcCCCCC----ch-------HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4788 99999999999999999999998532 23 55 6778889999999999999999999999999
Q ss_pred hccccccCCCCCCCCccccccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCChhhHHHHhhhhhHHHHH
Q 017243 81 SAVRRQFGSKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTT 160 (375)
Q Consensus 81 a~~R~qfg~~~~~~e~~i~~~q~~q~~L~~~la~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~K~~~t~ 160 (375)
+..|+|||. ||.+||.+|++|+++.+.+++.+.+..++.+.++. ++ .+....++++|+++++
T Consensus 278 a~~R~~fg~-------~i~~~q~vq~~la~~~~~~~aar~~~~~aa~~~~~-------~~----~~~~~~~~~aK~~a~~ 339 (393)
T 3pfd_A 278 TKERKQFGR-------PVSDNQGVQFMLADMAMKIEAARLMVYSAAARAER-------GE----GDLGFISAASKCFASD 339 (393)
T ss_dssp HHHCEETTE-------EGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------C--------CHHHHHHHHHHHH
T ss_pred HhcCccCCc-------chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------CC----cchHHHHHHHHHHHHH
Confidence 999999998 99999999999999999999999988777655532 22 1244568999999999
Q ss_pred HHHHHHHHHHHHcccccccccCCcccccccccccccccccccchHHHHHHHHHH
Q 017243 161 ATADGIEECRKLCGGHGYLCSSGLPELFAVYVPACTYEGDNIVLLLQVARFLMK 214 (375)
Q Consensus 161 ~~~~~~~~~r~~~GG~G~~~~~~l~~~~~d~~~~~t~EGdn~Vl~~~iar~ll~ 214 (375)
.+.++++.|+|+|||.||+.++++++++||++...|++|+|+|++.+|+|.+++
T Consensus 340 ~a~~~~~~a~q~~Gg~g~~~~~~~~r~~Rda~~~~i~~Gt~ei~~~~ia~~ll~ 393 (393)
T 3pfd_A 340 VAMEVTTDAVQLFGGYGYTQDFPVERMMRDAKITQIYEGTNQIQRVVMSRALLR 393 (393)
T ss_dssp HHHHHHHHHHHHTGGGGGBTTSSHHHHHHHHHHHTTSSSCHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhchhhccCCChHHHHHHhhcceeeecCHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999999999999999999999999998864
No 14
>1buc_A Butyryl-COA dehydrogenase; acyl-COA dehydrogenase short-chain acyl-COA dehydrogenase, flavoprotein, oxidoreductase; HET: CAA FAD; 2.50A {Megasphaera elsdenii} SCOP: a.29.3.1 e.6.1.1
Probab=99.95 E-value=4.1e-28 Score=236.77 Aligned_cols=179 Identities=22% Similarity=0.193 Sum_probs=160.9
Q ss_pred CCCCcCCCCCcCceEEeccCcccCcccccCcccccCCCceeecCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 017243 1 MKFGNGAYNTMDNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRY 80 (375)
Q Consensus 1 ~k~G~~~~~~~dng~i~Fd~vRIP~~~lL~~~~~v~~~G~~~~~~~~~~~~~~~l~~~R~~~~~~~~~~~~~al~ia~rY 80 (375)
+|+| +++.+++.|.||||+||.+++||..+ +| ++ ..+..+..+|+.+++.++|.++++++.+++|
T Consensus 204 ~~~g---~~~~~~~~v~f~~v~Vp~~~~lg~~g----~g-------~~-~~~~~l~~~r~~~aa~~~G~a~~al~~~~~y 268 (383)
T 1buc_A 204 DKMG---IHTSQTMELVFQDVKVPAENMLGEEG----KG-------FK-IAMMTLDGGRIGVAAQALGIAEAALADAVEY 268 (383)
T ss_dssp CCSS---CTTSCEEEEEEEEEEECGGGEESCTT----BH-------HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccc---ccCCceeEEEEccEEeCHHHcCCCCC----ch-------HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4788 99999999999999999999998532 23 44 6677888999999999999999999999999
Q ss_pred hccccccCCCCCCCCccccccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCChhhHHHHhhhhhHHHHH
Q 017243 81 SAVRRQFGSKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTT 160 (375)
Q Consensus 81 a~~R~qfg~~~~~~e~~i~~~q~~q~~L~~~la~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~K~~~t~ 160 (375)
++.|+|||. ||.+||.+|++|+++.+..++.+.+..++.+.++ .+. +....++++|+++++
T Consensus 269 a~~R~~fG~-------~i~~~q~vq~~la~~~~~~~~ar~~~~~aa~~~~-------~g~-----~~~~~~~~aK~~a~~ 329 (383)
T 1buc_A 269 SKQRVQFGK-------PLCKFQSISFKLADMKMQIEAARNLVYKAACKKQ-------EGK-----PFTVDAAIAKRVASD 329 (383)
T ss_dssp HHHCEETTE-------EGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HTC-----CCHHHHHHHHHHHHH
T ss_pred HHhCeeCCc-------chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------CCC-----chHHHHHHHHHHHHH
Confidence 999999998 9999999999999999999999998877765543 222 245678999999999
Q ss_pred HHHHHHHHHHHHcccccccccCCcccccccccccccccccccchHHHHHHHHH
Q 017243 161 ATADGIEECRKLCGGHGYLCSSGLPELFAVYVPACTYEGDNIVLLLQVARFLM 213 (375)
Q Consensus 161 ~~~~~~~~~r~~~GG~G~~~~~~l~~~~~d~~~~~t~EGdn~Vl~~~iar~ll 213 (375)
.+.++++.|+|+|||.||+.++++++++||++...+++|+++|++..+++.++
T Consensus 330 ~a~~~~~~a~q~~Gg~g~~~~~~~~r~~Rda~~~~i~~Gt~~i~~~~ia~~~l 382 (383)
T 1buc_A 330 VAMRVTTEAVQIFGGYGYSEEYPVARHMRDAKITQIYEGTNEVQLMVTGGALL 382 (383)
T ss_dssp HHHHHHHHHHHHHGGGGGSTTSSHHHHHHHHGGGGTTTSCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCCeecCCCChHHHHHHHhhcccccCCHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999875
No 15
>2vig_A Short-chain specific acyl-COA dehydrogenase,; fatty acid metabolism, FAD, polymorphism, flavoprotein, mitochondrion, disease mutation; HET: FAD COS; 1.9A {Homo sapiens} PDB: 1jqi_A*
Probab=99.95 E-value=4.5e-28 Score=237.21 Aligned_cols=184 Identities=20% Similarity=0.212 Sum_probs=164.7
Q ss_pred CCCCcCCCCCcCceEEeccCcccCcccccCcccccCCCceeecCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 017243 1 MKFGNGAYNTMDNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRY 80 (375)
Q Consensus 1 ~k~G~~~~~~~dng~i~Fd~vRIP~~~lL~~~~~v~~~G~~~~~~~~~~~~~~~l~~~R~~~~~~~~~~~~~al~ia~rY 80 (375)
+|+| +++.+++.|.||||+||.+++||+.+ +| +. ..+..+..+|+.+++.++|.++++++.+++|
T Consensus 201 ~~~g---~r~~~~~~v~fd~v~Vp~~~~lg~~g----~g-------~~-~~~~~l~~~r~~~aa~~~G~a~~al~~a~~y 265 (391)
T 2vig_A 201 DKLG---IRGSSTANLIFEDCRIPKDSILGEPG----MG-------FK-IAMQTLDMGRIGIASQALGIAQTALDCAVNY 265 (391)
T ss_dssp CBSS---CTTSCEEEEEEEEEEEEGGGEESSTT----BH-------HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccc---CCCCCeeEEEECcEEECHHHcCCCCC----ch-------HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4788 99999999999999999999998532 23 44 5677888999999999999999999999999
Q ss_pred hccccccCCCCCCCCccccccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCChhhHHHHhhhhhHHHHH
Q 017243 81 SAVRRQFGSKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTT 160 (375)
Q Consensus 81 a~~R~qfg~~~~~~e~~i~~~q~~q~~L~~~la~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~K~~~t~ 160 (375)
+..|+|||. ||.++|.+|++|+++.+..++.+.+..++.+.+ +.+. +....++++|+++++
T Consensus 266 a~~R~~fg~-------~i~~~q~v~~~la~~~~~~~aar~~~~~aa~~~-------~~g~-----~~~~~~~~aK~~a~~ 326 (391)
T 2vig_A 266 AENRMAFGA-------PLTKLQVIQFKLADMALALESARLLTWRAAMLK-------DNKK-----PFIKEAAMAKLAASE 326 (391)
T ss_dssp HHHCEETTE-------EGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HTTC-----CCHHHHHHHHHHHHH
T ss_pred HHhCccCCC-------cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hCCC-----CchHHHHHHHHHHHH
Confidence 999999998 999999999999999999999999887776544 2332 134568999999999
Q ss_pred HHHHHHHHHHHHcccccccccCCcccccccccccccccccccchHHHHHHHHHHHHHh
Q 017243 161 ATADGIEECRKLCGGHGYLCSSGLPELFAVYVPACTYEGDNIVLLLQVARFLMKTVSQ 218 (375)
Q Consensus 161 ~~~~~~~~~r~~~GG~G~~~~~~l~~~~~d~~~~~t~EGdn~Vl~~~iar~ll~~~~~ 218 (375)
.+.++++.|+|+|||.||+.++++++++||++...+++|+++|++..+++.+++.|+.
T Consensus 327 ~a~~~~~~a~q~~Gg~g~~~~~~~~r~~Rda~~~~i~~G~~~~~~~~ia~~~l~~~~~ 384 (391)
T 2vig_A 327 AATAISHQAIQILGGMGYVTEMPAERHYRDARITEIYEGTSEIQRLVIAGHLLRSYRS 384 (391)
T ss_dssp HHHHHHHHHHHHHGGGGGBTTSSHHHHHHHHHHHTTTTSCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhhCCeEecCCChHHHHHHHhhcceeecCHHHHHHHHHHHHHHhhccc
Confidence 9999999999999999999999999999999999999999999999999999998853
No 16
>3mkh_A Nitroalkane oxidase; oxidoreductase flavoenzyme, acyl-COA dehydrogen flavoprotein, oxidoreductase; HET: FAD; 2.00A {Podospora anserina}
Probab=99.95 E-value=8.5e-28 Score=238.61 Aligned_cols=185 Identities=13% Similarity=0.152 Sum_probs=162.9
Q ss_pred CCCCcCCCCCcCceEEeccCcccCcccccCcccccCCCceeecCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 017243 1 MKFGNGAYNTMDNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRY 80 (375)
Q Consensus 1 ~k~G~~~~~~~dng~i~Fd~vRIP~~~lL~~~~~v~~~G~~~~~~~~~~~~~~~l~~~R~~~~~~~~~~~~~al~ia~rY 80 (375)
+|+| +++.+++.|.||||+||.+++||+.+ +| +. ..+..+..+|+.+++.++|.++++++.+++|
T Consensus 231 ~~~G---~r~~~~~~v~fddv~VP~~~~lg~~~----~g-------~~-~~~~~l~~~r~~~aa~~lG~a~~al~~a~~y 295 (438)
T 3mkh_A 231 ATPG---HTSVSGPHVRYTNVRVPTKNVLCPAG----QG-------AK-VAFGAFDGSAVLVGAMGVGLMRAAFDAALKF 295 (438)
T ss_dssp CCSS---CTTCCCCEEEEEEEEEEGGGEEECTT----TH-------HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcC---CcCCCceEEEECcEEECHHHcCCCCC----ch-------HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678 99999999999999999999998532 23 44 6778889999999999999999999999999
Q ss_pred hccccccC-CCCCCCCccccccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCChhhHHHHhhhhhHHHH
Q 017243 81 SAVRRQFG-SKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTT 159 (375)
Q Consensus 81 a~~R~qfg-~~~~~~e~~i~~~q~~q~~L~~~la~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~K~~~t 159 (375)
+..|+||| . ||.+||.+|++|+++.+.+++.+.+..++.+.++ .+.. ........++++|++++
T Consensus 296 a~~R~~~g~~-------pi~~~q~vq~~la~~~~~~~aar~~~~~aa~~~d-------~~~~-~~~~~~~~~~~aK~~a~ 360 (438)
T 3mkh_A 296 AKEDNRGGAV-------PLLERQAFADLLSGVKIQTEAARALTWKAAHAME-------NGPG-DYDARRELALAAKVFCS 360 (438)
T ss_dssp HHHCCTTCSS-------CGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HCSS-CHHHHHHHHHHHHHHHH
T ss_pred HhhcEeCCCe-------eccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------CCCC-cchhHHHHHHHHHHHHH
Confidence 99999999 6 9999999999999999999999998877766553 2221 11223445789999999
Q ss_pred HHHHHHHHHHHHHcccccccccCCcccccccccccccccccc-cchHHHHHHHHHHH
Q 017243 160 TATADGIEECRKLCGGHGYLCSSGLPELFAVYVPACTYEGDN-IVLLLQVARFLMKT 215 (375)
Q Consensus 160 ~~~~~~~~~~r~~~GG~G~~~~~~l~~~~~d~~~~~t~EGdn-~Vl~~~iar~ll~~ 215 (375)
+.+.+++++|+|+|||+||+.++++++++||+++..|+||+| +|++.++++.+++.
T Consensus 361 e~a~~~~~~a~q~~Gg~G~~~~~~l~r~~Rda~~~~i~~Gt~~~v~~~~i~r~ll~~ 417 (438)
T 3mkh_A 361 EAAVKACTDVINAVGISAYDLQRPFSDLLNTAVVLPIFDGGNVGIRRRHLQQLMLKP 417 (438)
T ss_dssp HHHHHHHHHHHHHHGGGGGCTTSSHHHHHHHHTHHHHSSSCTTTTHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHhchhhccCCCcHHHHHHHhheeeeecCChHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999 99999999999886
No 17
>4hr3_A Putative acyl-COA dehydrogenase; ssgcid, seattle structural genomics center for infectious DI niaid; HET: FAD; 1.80A {Mycobacterium abscessus}
Probab=99.95 E-value=3.1e-28 Score=240.11 Aligned_cols=185 Identities=17% Similarity=0.204 Sum_probs=164.8
Q ss_pred CCCCcCCCCCcC--ceEEeccCcccCcccccCcccccCCCceeecCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017243 1 MKFGNGAYNTMD--NGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIAT 78 (375)
Q Consensus 1 ~k~G~~~~~~~d--ng~i~Fd~vRIP~~~lL~~~~~v~~~G~~~~~~~~~~~~~~~l~~~R~~~~~~~~~~~~~al~ia~ 78 (375)
+|+| +++.+ ++.|.||||+||.+++||..+ +| +. ..+..+..+|+.+++.++|.++++++.++
T Consensus 227 ~~~g---~r~~~~~~~~v~fddv~Vp~~~~lg~~~----~g-------~~-~~~~~l~~~r~~~aa~~~G~a~~al~~a~ 291 (415)
T 4hr3_A 227 PTMG---FYDEPGGHGVVSFDNVRLPADAFIAGPG----KG-------FE-IAQGRLGPGRVHHAMRLIGLAEVALEHAC 291 (415)
T ss_dssp CBTT---BCCTTTCEEEEEEEEEEEEGGGBSSCTT----CH-------HH-HHHHHCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred Cccc---cCCCCCCeeEEEEccEEECHHHcCCCCC----ch-------HH-HHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4788 99887 999999999999999998532 23 44 66778889999999999999999999999
Q ss_pred HhhccccccCCCCCCCCccccccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCChhhHHHHhhhhhHHH
Q 017243 79 RYSAVRRQFGSKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLT 158 (375)
Q Consensus 79 rYa~~R~qfg~~~~~~e~~i~~~q~~q~~L~~~la~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~K~~~ 158 (375)
+|+..|+|||. ||.++|.+|++|+++.+.+++.+.+..++.+.+++ .. ..+....++++|+++
T Consensus 292 ~~a~~R~~fg~-------~i~~~q~vq~~la~~~~~~~aar~~~~~aa~~~d~-------~~---~~~~~~~~~~aK~~a 354 (415)
T 4hr3_A 292 RRGLDRTAFGK-------PLVNLGGNRERIADARIAINQTRLLVLHAAWLLDT-------VG---IMGALSAVSEIKVAA 354 (415)
T ss_dssp HHHHHCEETTE-------EGGGSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------TC---GGGCHHHHHHHHHHH
T ss_pred HHHhcCccCCC-------cHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------cc---CCchHHHHHHHHHHH
Confidence 99999999998 99999999999999999999999988777665532 10 123456789999999
Q ss_pred HHHHHHHHHHHHHHcccccccccCCcccccccccccccccccccchHHHHHHHHHHHHH
Q 017243 159 TTATADGIEECRKLCGGHGYLCSSGLPELFAVYVPACTYEGDNIVLLLQVARFLMKTVS 217 (375)
Q Consensus 159 t~~~~~~~~~~r~~~GG~G~~~~~~l~~~~~d~~~~~t~EGdn~Vl~~~iar~ll~~~~ 217 (375)
++.+.++++.|+|+|||.||+.++++++++||++...+++|+++|++..+++.+++.|+
T Consensus 355 ~e~a~~v~~~a~qi~Gg~g~~~~~~~~r~~Rda~~~~i~~Gt~ei~~~~ia~~~l~~~~ 413 (415)
T 4hr3_A 355 PNMAQQVIDMAIQIHGGGGLSNDFPLAAAWVNARALRLADGPDEVHRGVVARIELAKYA 413 (415)
T ss_dssp HHHHHHHHHHHHHHTGGGGGSSSSSHHHHHHHHHHTTTTTSCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHhCccccCCCchHHHHHHHhhhheeecCcHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999764
No 18
>1rx0_A Acyl-COA dehydrogenase family member 8, mitochondrial; flavoprotein, coenzyme A, oxidoreductase; HET: FAD 2MC; 1.77A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1
Probab=99.95 E-value=1.1e-27 Score=234.55 Aligned_cols=181 Identities=19% Similarity=0.185 Sum_probs=161.4
Q ss_pred CCCCcCCCCCcCceEEeccCcccCcccccCcccccCCCceeecCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 017243 1 MKFGNGAYNTMDNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRY 80 (375)
Q Consensus 1 ~k~G~~~~~~~dng~i~Fd~vRIP~~~lL~~~~~v~~~G~~~~~~~~~~~~~~~l~~~R~~~~~~~~~~~~~al~ia~rY 80 (375)
+|+| +++.+++.|.||||+||.+++||..+ +| ++ ..+..+..+|+.+++.++|.++++++.+++|
T Consensus 212 ~~~g---~~~~~~~~v~fd~v~Vp~~~~lg~~g----~g-------~~-~~~~~l~~~r~~~aa~~~G~a~~al~~a~~y 276 (393)
T 1rx0_A 212 KKVG---WNSQPTRAVIFEDCAVPVANRIGSEG----QG-------FL-IAVRGLNGGRINIASCSLGAAHASVILTRDH 276 (393)
T ss_dssp CBSS---CTTSCEEEEEEEEEEEEGGGEESSTT----CH-------HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccc---cCCCCceEEEEcCeEeCHHHcCCCCC----ch-------HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3678 99999999999999999999998522 23 44 5677888999999999999999999999999
Q ss_pred hccccccCCCCCCCCccccccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCChhhHHHHhhhhhHHHHH
Q 017243 81 SAVRRQFGSKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTT 160 (375)
Q Consensus 81 a~~R~qfg~~~~~~e~~i~~~q~~q~~L~~~la~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~K~~~t~ 160 (375)
++.|+|||. ||.++|.+|++|+++.+.+++.+.+..+..+.++ .++ .+....++++|+++++
T Consensus 277 a~~R~~fG~-------~i~~~q~vq~~la~~~~~~~aar~~~~~aa~~~d-------~~~----~~~~~~~~~aK~~a~~ 338 (393)
T 1rx0_A 277 LNVRKQFGE-------PLASNQYLQFTLADMATRLVAARLMVRNAAVALQ-------EER----KDAVALCSMAKLFATD 338 (393)
T ss_dssp HHHCEETTE-------EGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------TTC----TTHHHHHHHHHHHHHH
T ss_pred HHhCccCCC-------chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------CCC----cchhHHHHHHHHHHHH
Confidence 999999998 9999999999999999999999988777655442 222 2346678999999999
Q ss_pred HHHHHHHHHHHHcccccccccCCcccccccccccccccccccchHHHHHHHHHH
Q 017243 161 ATADGIEECRKLCGGHGYLCSSGLPELFAVYVPACTYEGDNIVLLLQVARFLMK 214 (375)
Q Consensus 161 ~~~~~~~~~r~~~GG~G~~~~~~l~~~~~d~~~~~t~EGdn~Vl~~~iar~ll~ 214 (375)
.+.++++.|+|+|||.||+.++++++++||++...|++|+|+|++..|+|.+++
T Consensus 339 ~a~~v~~~a~q~~Gg~g~~~~~~l~r~~Rda~~~~i~~Gt~~i~~~~ia~~~l~ 392 (393)
T 1rx0_A 339 ECFAICNQALQMHGGYGYLKDYAVQQYVRDSRVHQILEGSNEVMRILISRSLLQ 392 (393)
T ss_dssp HHHHHHHHHHHHTGGGGGBTTSTHHHHHHHHHHTTTSSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCeeecCCChHHHHHHhccCceecCChHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999999999999875
No 19
>3nf4_A Acyl-COA dehydrogenase; seattle structural genomics center for infectious disease, S FAD, FADH, tuberculosis, oxidoredu; HET: FAD; 2.35A {Mycobacterium thermoresistibile}
Probab=99.95 E-value=2.5e-28 Score=238.63 Aligned_cols=180 Identities=19% Similarity=0.163 Sum_probs=153.1
Q ss_pred CCCCcCCCCCcCceEEeccCcccCcccccCcccccCCCceeecCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 017243 1 MKFGNGAYNTMDNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRY 80 (375)
Q Consensus 1 ~k~G~~~~~~~dng~i~Fd~vRIP~~~lL~~~~~v~~~G~~~~~~~~~~~~~~~l~~~R~~~~~~~~~~~~~al~ia~rY 80 (375)
+|+| +++.+++.+.||||+||.+++||..+ +| +. ..+..+..+|+.+++.++|.++++++.+++|
T Consensus 208 ~~~G---~~~~~~~~v~fd~v~Vp~~~~lg~~~----~g-------~~-~~~~~l~~~r~~~aa~~~G~a~~al~~a~~~ 272 (387)
T 3nf4_A 208 EKMG---LHAVPTTSAFYDNARIDADRRIGEEG----QG-------LQ-IAFSALDSGRLGIAAVATGLAQAALDEAVAY 272 (387)
T ss_dssp CBSS---CCSSCEEEEEEEEEEEEGGGEESSTT----CH-------HH-HHHHTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccc---cCCCCeeEEEEeeEEecHHHcCCCCC----ch-------HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4688 99999999999999999999998532 23 44 6677889999999999999999999999999
Q ss_pred hccccccCCCCCCCCccccccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCChhhHHHHhhhhhHHHHH
Q 017243 81 SAVRRQFGSKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTT 160 (375)
Q Consensus 81 a~~R~qfg~~~~~~e~~i~~~q~~q~~L~~~la~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~K~~~t~ 160 (375)
++.|+|||. ||.++|.+|++|+++.+..++.+.+..+..+.++ .++ +....++++|+++++
T Consensus 273 a~~R~~fg~-------~i~~~q~v~~~la~~~~~~~aar~~~~~aa~~~~-------~~~-----~~~~~~~~aK~~a~~ 333 (387)
T 3nf4_A 273 ANERTAFGR-------KIIDHQGLGFLLADMAAAVATARATYLDAARRRD-------QGR-----PYSQQASIAKLTATD 333 (387)
T ss_dssp HHC-------------CTTTC-CHHHHHHHHHHHHHHHHHHHHHHHHHHH-------TTC-----CCHHHHHHHHHHHHH
T ss_pred HHhCeeCCC-------chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------CCC-----CchHHHHHHHHHHHH
Confidence 999999998 9999999999999999999999988776655442 232 234568999999999
Q ss_pred HHHHHHHHHHHHcccccccccCCcccccccccccccccccccchHHHHHHHHHH
Q 017243 161 ATADGIEECRKLCGGHGYLCSSGLPELFAVYVPACTYEGDNIVLLLQVARFLMK 214 (375)
Q Consensus 161 ~~~~~~~~~r~~~GG~G~~~~~~l~~~~~d~~~~~t~EGdn~Vl~~~iar~ll~ 214 (375)
.+.+++++|+|+|||+||+.++++++++||++...|+||+|+|++..|+|.++|
T Consensus 334 ~a~~~~~~a~q~~Gg~G~~~~~~~~r~~Rda~~~~i~~Gt~ei~~~~ia~~l~~ 387 (387)
T 3nf4_A 334 AAMKVTTDAVQVFGGVGYTRDYRVERYMREAKIMQIFEGTNQIQRLVIARGLTR 387 (387)
T ss_dssp HHHHHHHHHHHHHGGGGGBTTSSHHHHHHHHHHHTTSSSCHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHhhCcHhhcCCCcHHHHHhHhhcCeeecChHHHHHHHHHHHHhC
Confidence 999999999999999999999999999999999999999999999999998764
No 20
>3r7k_A Probable acyl COA dehydrogenase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: FDA; 2.50A {Mycobacterium abscessus}
Probab=99.95 E-value=6.3e-28 Score=237.09 Aligned_cols=178 Identities=18% Similarity=0.210 Sum_probs=159.9
Q ss_pred CCCCcCCCCCcCceEEeccCcccCcccccCcccccCCCceeecCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 017243 1 MKFGNGAYNTMDNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRY 80 (375)
Q Consensus 1 ~k~G~~~~~~~dng~i~Fd~vRIP~~~lL~~~~~v~~~G~~~~~~~~~~~~~~~l~~~R~~~~~~~~~~~~~al~ia~rY 80 (375)
+++| +++.+++.|.||||+||.+++||..+ +| +. ..+..+..+|+.+++.++|.++++++.+++|
T Consensus 224 ~~~G---~~~~~~~~v~fd~v~Vp~~~~lg~~~----~g-------~~-~~~~~l~~~r~~~aa~~~G~a~~al~~a~~y 288 (403)
T 3r7k_A 224 DKMG---WRCSDTAELSFVDVRVPADNLVGAEN----SG-------FL-QIMQQFQAERLGIAVQAYATAGRALDLAKSW 288 (403)
T ss_dssp CBSS---CTTSCEEEEEEEEEEEEGGGEESSTT----CH-------HH-HHHHTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccC---CCCCCceEEEEeeEEECHHHcCCCCC----ch-------HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4788 99999999999999999999998532 23 44 6677889999999999999999999999999
Q ss_pred hccccccCCCCCCCCccccccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCChhhHHHHhhhhhHHHHH
Q 017243 81 SAVRRQFGSKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTT 160 (375)
Q Consensus 81 a~~R~qfg~~~~~~e~~i~~~q~~q~~L~~~la~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~K~~~t~ 160 (375)
++.|+|||. ||.+||.+|++|+++.+.+++.+.+..++.+.++ .++ +....++++|+++++
T Consensus 289 a~~R~~fg~-------~i~~~q~vq~~la~~~~~~~aar~~~~~aa~~~d-------~~~-----~~~~~~~~aK~~a~~ 349 (403)
T 3r7k_A 289 ARERETFGR-------PLTGRQIIRHKLAEMARQVDVACTYTRAVMQRWL-------AGE-----DVVAEVSMAKNTAVY 349 (403)
T ss_dssp HHHCEETTE-------EGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------TTC-----CCHHHHHHHHHHHHH
T ss_pred HHcCccCCC-------chhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------CCC-----CcHHHHHHHHHHHHH
Confidence 999999998 9999999999999999999999998877765553 232 234568999999999
Q ss_pred HHHHHHHHHHHHcccccccccCCcccccccccccccccccccchHHHHHHHH
Q 017243 161 ATADGIEECRKLCGGHGYLCSSGLPELFAVYVPACTYEGDNIVLLLQVARFL 212 (375)
Q Consensus 161 ~~~~~~~~~r~~~GG~G~~~~~~l~~~~~d~~~~~t~EGdn~Vl~~~iar~l 212 (375)
.+.++++.|+|+|||+||+.++++++++||++...|++|+++|++..|+|.+
T Consensus 350 ~a~~v~~~a~q~~Gg~G~~~~~~~~r~~Rda~~~~i~~Gt~ei~~~~ia~~l 401 (403)
T 3r7k_A 350 ACDYVVNEAVQIFGGMGYMRESEIERHYRDCRILGIGGGTNEIMNEVIAKRI 401 (403)
T ss_dssp HHHHHHHHHHHHHGGGGGBTTSHHHHHHHHHTTTTTTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCeEecCCchHHHHHHHhCcceeecCHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999976
No 21
>3sf6_A Glutaryl-COA dehydrogenase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; HET: FDA; 1.70A {Mycobacterium smegmatis}
Probab=99.95 E-value=1.1e-27 Score=235.47 Aligned_cols=179 Identities=17% Similarity=0.094 Sum_probs=161.8
Q ss_pred CCCCcCCCCCcCceEEeccCcccCcccccCcccccCCCceeecCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 017243 1 MKFGNGAYNTMDNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRY 80 (375)
Q Consensus 1 ~k~G~~~~~~~dng~i~Fd~vRIP~~~lL~~~~~v~~~G~~~~~~~~~~~~~~~l~~~R~~~~~~~~~~~~~al~ia~rY 80 (375)
+++| +++.+++.|.||||+||.+++||. + +| +. ..+..+..+|+.+++.++|.++++++.+++|
T Consensus 220 ~~~G---~r~~~~~~v~fd~v~Vp~~~~lg~-~----~g-------~~-~~~~~l~~~r~~~aa~~~G~a~~al~~a~~y 283 (403)
T 3sf6_A 220 SKMS---LRASVTSELVLDGVRLPDSARLPG-A----TS-------LG-APLRCLNEARFGIVFGALGAARDCLETALAY 283 (403)
T ss_dssp SCSS---CTTSCEEEEEEEEEEEEGGGBCTT-C----CS-------TH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccC---CCCCceeEEEEccEEEcHHHccCC-C----hh-------HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678 999999999999999999999984 1 34 55 6778899999999999999999999999999
Q ss_pred hccccccCCCCCCCCccccccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCChhhHHHHhhhhhHHHHH
Q 017243 81 SAVRRQFGSKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTT 160 (375)
Q Consensus 81 a~~R~qfg~~~~~~e~~i~~~q~~q~~L~~~la~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~K~~~t~ 160 (375)
+..|+|||. ||.++|.+|++|+++.+.+++.+.+..++.+.++. +. +....++++|+++++
T Consensus 284 a~~R~~fg~-------pi~~~q~vq~~la~~~~~~~aar~~~~~aa~~~d~-------~~-----~~~~~~~~aK~~a~~ 344 (403)
T 3sf6_A 284 ACSREQFDR-------PIGGFQLTQQKLADMTLEYGKGFLLALHLGRQKDA-------GE-----LAPEQVSLGKLNNVR 344 (403)
T ss_dssp HHHCEETTE-------EGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------TC-----CCHHHHHHHHHHHHH
T ss_pred HhhCcccCC-------cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-------CC-----CchHHHHHHHHHHHH
Confidence 999999998 99999999999999999999999988777665532 22 234568999999999
Q ss_pred HHHHHHHHHHHHcccccccccCCcccccccccccccccccccchHHHHHHHHHH
Q 017243 161 ATADGIEECRKLCGGHGYLCSSGLPELFAVYVPACTYEGDNIVLLLQVARFLMK 214 (375)
Q Consensus 161 ~~~~~~~~~r~~~GG~G~~~~~~l~~~~~d~~~~~t~EGdn~Vl~~~iar~ll~ 214 (375)
.+.++++.|+|+|||+||+.++++++++||+++..|++|+++|++..++|.+++
T Consensus 345 ~a~~v~~~a~q~~Gg~g~~~~~~~~r~~Rda~~~~i~~Gt~~i~~~~ia~~llg 398 (403)
T 3sf6_A 345 EAIEIARTARTVLGASGITGEYPVMRHANNLESVLTYEGTSEMHTLIIGQALTG 398 (403)
T ss_dssp HHHHHHHHHHHHHGGGGGSTTSSHHHHHHHHHHHHHSSSCHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhcCCeEccccCcHHHHHhhcccceeecCHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999999999999999999999999999875
No 22
>3swo_A Glutaryl-COA dehydrogenase; ssgcid, glutaryl-COA dehdrogenase, mycobacerium smegmatis, S genomics; HET: FDA; 1.45A {Mycobacterium smegmatis}
Probab=99.95 E-value=1.1e-27 Score=234.93 Aligned_cols=179 Identities=20% Similarity=0.184 Sum_probs=161.9
Q ss_pred CCCCcCCCCCcCceEEeccCcccCcccccCcccccCCCceeecCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 017243 1 MKFGNGAYNTMDNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRY 80 (375)
Q Consensus 1 ~k~G~~~~~~~dng~i~Fd~vRIP~~~lL~~~~~v~~~G~~~~~~~~~~~~~~~l~~~R~~~~~~~~~~~~~al~ia~rY 80 (375)
+++| +++.+++.|.||||+||.+++||. + +| +. ..+..+..+|+.+++.++|.++++++.+++|
T Consensus 215 ~~~G---~r~~~~~~v~fd~v~Vp~~~~lg~-~----~g-------~~-~~~~~l~~~r~~~aa~~~G~a~~al~~a~~~ 278 (399)
T 3swo_A 215 RKLS---LRASVTSELVLDNVRLPASAQLPL-A----EG-------LS-APLSCLNEARFGIVFGALGAARDSLETTIAY 278 (399)
T ss_dssp CBSS---CCSSCEEEEEEEEEEECGGGBCTT-C----CS-------TH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred Cccc---CCCCceeEEEEccEEEcHHHcCCC-C----hh-------HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3678 999999999999999999999985 2 34 55 6778899999999999999999999999999
Q ss_pred hccccccCCCCCCCCccccccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCChhhHHHHhhhhhHHHHH
Q 017243 81 SAVRRQFGSKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTT 160 (375)
Q Consensus 81 a~~R~qfg~~~~~~e~~i~~~q~~q~~L~~~la~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~K~~~t~ 160 (375)
+..|+|||. ||.++|.+|++|+++.+.+++.+.+..++.+.++ .+. +....++++|+++++
T Consensus 279 a~~R~~fG~-------~i~~~q~vq~~la~~~~~~~aar~~~~~aa~~~d-------~~~-----~~~~~~~~aK~~a~~ 339 (399)
T 3swo_A 279 TQSREVFDK-------PLSNYQLTQEKLANMTVELGKGMLLAIHLGRIKD-------AEG-----VRPEQISLGKLNNVR 339 (399)
T ss_dssp HHHCEETTE-------EGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------TTC-----CCHHHHHHHHHHHHH
T ss_pred HhcCeeCCc-------chhhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------CCC-----CchHHHHHHHHHHHH
Confidence 999999998 9999999999999999999999998877765543 221 235668999999999
Q ss_pred HHHHHHHHHHHHcccccccccCCcccccccccccccccccccchHHHHHHHHHH
Q 017243 161 ATADGIEECRKLCGGHGYLCSSGLPELFAVYVPACTYEGDNIVLLLQVARFLMK 214 (375)
Q Consensus 161 ~~~~~~~~~r~~~GG~G~~~~~~l~~~~~d~~~~~t~EGdn~Vl~~~iar~ll~ 214 (375)
.+.++++.|+|+|||+||+.++++++++||+++..+++|+++|++..+++.+++
T Consensus 340 ~a~~v~~~a~q~~Gg~g~~~~~~~~r~~Rda~~~~i~~Gt~~i~~~~ia~~llg 393 (399)
T 3swo_A 340 EAIAIARECRTLLGGSGITLEYSPLRHANNLESVLTYEGTSEMHLLSIGKALTG 393 (399)
T ss_dssp HHHHHHHHHHHHHGGGGGBSSSTHHHHHHHHHHHHHSSSCHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhhCcccccCCCcHHHHHHHhhcceeecCHHHHHHHHHHHHHcC
Confidence 999999999999999999999999999999999999999999999999998875
No 23
>2pg0_A Acyl-COA dehydrogenase; GK1316, geobacillus kaustophilus HTA structural genomics, PSI, protein structure initiative; HET: FAD; 1.80A {Geobacillus kaustophilus}
Probab=99.95 E-value=1.3e-27 Score=233.34 Aligned_cols=178 Identities=21% Similarity=0.233 Sum_probs=159.4
Q ss_pred CCCCcCCCCCcCceEEeccCcccCcccccCcccccCCCceeecCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 017243 1 MKFGNGAYNTMDNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRY 80 (375)
Q Consensus 1 ~k~G~~~~~~~dng~i~Fd~vRIP~~~lL~~~~~v~~~G~~~~~~~~~~~~~~~l~~~R~~~~~~~~~~~~~al~ia~rY 80 (375)
+|+| +++.+++.|.||||+||.+++||..+ +| ++ ..+..+..+|+.+++.++|.++++++.+++|
T Consensus 206 ~~~g---~~~~~~~~v~fd~v~Vp~~~~lg~~g----~g-------~~-~~~~~l~~~r~~~aa~~~G~a~~al~~a~~y 270 (385)
T 2pg0_A 206 EKVG---LHAQDTAELFFQDAKVPAYNLLGEEG----KG-------FY-YLMEKLQQERLVVAIAAQTAAEVMFSLTKQY 270 (385)
T ss_dssp CBSS---CTTSCCEEEEEEEEEEEGGGEESCTT----CH-------HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccc---cCCCceEEEEEcceEEcHHHcCCCCC----ch-------HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4688 99999999999999999999998522 23 44 6677888999999999999999999999999
Q ss_pred hccccccCCCCCCCCccccccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCChhhHHHHhhhhhHHHHH
Q 017243 81 SAVRRQFGSKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTT 160 (375)
Q Consensus 81 a~~R~qfg~~~~~~e~~i~~~q~~q~~L~~~la~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~K~~~t~ 160 (375)
+..|+|||. ||.+||.+|++|+++.+..++.+.+..++.+.++ .+. +....++++|+++++
T Consensus 271 a~~R~~fg~-------~i~~~q~v~~~la~~~~~~~aar~~~~~aa~~~d-------~g~-----~~~~~~~~aK~~a~e 331 (385)
T 2pg0_A 271 VKQRTAFGK-------RVSEFQTVQFRLAEMATEIALGRTFVDRVIEEHM-------AGK-----QIVTEVSMAKWWITE 331 (385)
T ss_dssp HHHCEETTE-------EGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------TTC-----CCHHHHHHHHHHHHH
T ss_pred HhcCccCCC-------ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------CCC-----CchHHHHHHHHHHHH
Confidence 999999998 9999999999999999999999998777665442 232 245678999999999
Q ss_pred HHHHHHHHHHHHcccccccccCCcccccccccccccccccccchHHHHHHHH
Q 017243 161 ATADGIEECRKLCGGHGYLCSSGLPELFAVYVPACTYEGDNIVLLLQVARFL 212 (375)
Q Consensus 161 ~~~~~~~~~r~~~GG~G~~~~~~l~~~~~d~~~~~t~EGdn~Vl~~~iar~l 212 (375)
.+.++++.|+|+|||+||+.++++++++||++...+++|+++|++..+++.+
T Consensus 332 ~a~~~~~~a~q~~Gg~g~~~~~~~~r~~Rda~~~~i~~Gt~~i~~~~ia~~l 383 (385)
T 2pg0_A 332 MAKRVAAEAMQLHGGYGYMEEYEIARRYRDIPVSAIYAGTNEMMKTIIARQL 383 (385)
T ss_dssp HHHHHHHHHHHHTGGGGGBTTSHHHHHHHHGGGGGTTTSCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCccccCCCCcHHHHHhhhcCceeecCHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999864
No 24
>3ii9_A Glutaryl-COA dehydrogenase; slipchip, microfluidics, screening, optimization, protein crystallization, structural genomics; HET: PGE PG4; 1.74A {Burkholderia pseudomallei 1710B} PDB: 3eon_A* 3eom_A* 3gqt_A* 3gnc_A* 3d6b_A
Probab=99.95 E-value=9.9e-28 Score=235.13 Aligned_cols=179 Identities=20% Similarity=0.172 Sum_probs=161.6
Q ss_pred CCCCcCCCCCcCceEEeccCcccCcccccCcccccCCCceeecCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 017243 1 MKFGNGAYNTMDNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRY 80 (375)
Q Consensus 1 ~k~G~~~~~~~dng~i~Fd~vRIP~~~lL~~~~~v~~~G~~~~~~~~~~~~~~~l~~~R~~~~~~~~~~~~~al~ia~rY 80 (375)
+++| +++.+++.|.||||+||.+++|+. + +| ++ ..+..+..+|+.+++.++|.++++++.+++|
T Consensus 213 ~~~G---~~~~~~~~v~fddv~Vp~~~~l~~-~----~g-------~~-~~~~~l~~~r~~~aa~~~G~a~~al~~a~~y 276 (396)
T 3ii9_A 213 GKVG---LRASITGEIVLDEAFVPEENILPH-V----KG-------LR-GPFTCLNSARYGIAWGALGAAESCWHIARQY 276 (396)
T ss_dssp CCSS---CTTSCEEEEEEEEEEEEGGGBCTT-C----CS-------TH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccc---CCcCCeeEEEEccEEECHHHccCC-C----hH-------HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3678 999999999999999999999964 1 34 55 6778889999999999999999999999999
Q ss_pred hccccccCCCCCCCCccccccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCChhhHHHHhhhhhHHHHH
Q 017243 81 SAVRRQFGSKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTT 160 (375)
Q Consensus 81 a~~R~qfg~~~~~~e~~i~~~q~~q~~L~~~la~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~K~~~t~ 160 (375)
++.|+|||. ||.++|.+|++|+++.+.+++.+.+..++.+.++. +. +....++++|+++++
T Consensus 277 a~~R~~fg~-------~i~~~q~vq~~la~~~~~~~aar~~~~~aa~~~d~-------~~-----~~~~~~~~aK~~a~~ 337 (396)
T 3ii9_A 277 VLDRKQFGR-------PLAANQLIQKKLADMQTEITLGLQGVLRLGRMKDE-------GT-----AAVEITSIMKRNSCG 337 (396)
T ss_dssp HHHCEETTE-------EGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------TC-----CCHHHHHHHHHHHHH
T ss_pred HhhCeeCCC-------chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-------CC-----CchHHHHHHHHHHHH
Confidence 999999998 99999999999999999999999988777665532 21 235568999999999
Q ss_pred HHHHHHHHHHHHcccccccccCCcccccccccccccccccccchHHHHHHHHHH
Q 017243 161 ATADGIEECRKLCGGHGYLCSSGLPELFAVYVPACTYEGDNIVLLLQVARFLMK 214 (375)
Q Consensus 161 ~~~~~~~~~r~~~GG~G~~~~~~l~~~~~d~~~~~t~EGdn~Vl~~~iar~ll~ 214 (375)
.+.+++++|+|+|||+||+.++++++++||++...|++|+++|+++.|+|.+++
T Consensus 338 ~a~~~~~~a~q~~Gg~g~~~~~~~~r~~Rda~~~~i~~Gt~~~~~~~ia~~llg 391 (396)
T 3ii9_A 338 KALDIARLARDMLGGNGISDEFGVARHLVNLEVVNTYEGTHDIHALILGRAQTG 391 (396)
T ss_dssp HHHHHHHHHHHHHCSCSCSGGGHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhhCcccccCCCcHHHHHhhhcCceeecCHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999999999999999999999999998874
No 25
>2ix5_A Acyl-coenzyme A oxidase 4, peroxisomal; FAD, ACX4, flavin, peroxisome, glyoxysome, fatty acid metabo lipid metabolism, acyl-COA oxidase; HET: CAA FAD; 2.7A {Arabidopsis thaliana} PDB: 2ix6_A*
Probab=99.95 E-value=1.5e-27 Score=236.65 Aligned_cols=179 Identities=21% Similarity=0.263 Sum_probs=160.3
Q ss_pred CCCCcCCCCCcCceEEeccCcccCcccccCcccccCCCceeecCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 017243 1 MKFGNGAYNTMDNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRY 80 (375)
Q Consensus 1 ~k~G~~~~~~~dng~i~Fd~vRIP~~~lL~~~~~v~~~G~~~~~~~~~~~~~~~l~~~R~~~~~~~~~~~~~al~ia~rY 80 (375)
+|+| +++.+++.|.||||+||.+++|+.. +| +. .....+..+|+.+++.++|.++++++.+++|
T Consensus 246 ~~~G---~r~~~~~~v~fddv~VP~~~~lg~~-----~g-------~~-~~~~~l~~~r~~~aa~~~G~a~~al~~a~~y 309 (436)
T 2ix5_A 246 NKIG---LRMVQNGDILLQNVFVPDEDRLPGV-----NS-------FQ-DTSKVLAVSRVMVAWQPIGISMGIYDMCHRY 309 (436)
T ss_dssp CBSS---STTSCEEEEEEEEEEEEGGGBCTTC-----SS-------HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccC---CCcCCceeEEeccEEECHHHcCCcc-----cc-------HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3688 9999999999999999999999741 23 44 5677889999999999999999999999999
Q ss_pred hccccccCCCCCCCCccccccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCChhhHHHHhhhhhHHHHH
Q 017243 81 SAVRRQFGSKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTT 160 (375)
Q Consensus 81 a~~R~qfg~~~~~~e~~i~~~q~~q~~L~~~la~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~K~~~t~ 160 (375)
++.|+|||. ||.+||.+|++|++|.+.+++.+.+..++.+.++ .+. +....++++|+++++
T Consensus 310 a~~R~qfG~-------pi~~~q~vq~~la~~~~~~~aar~l~~~aa~~~d-------~g~-----~~~~~as~aK~~a~e 370 (436)
T 2ix5_A 310 LKERKQFGA-------PLAAFQLNQQKLVQMLGNVQAMFLMGWRLCKLYE-------TGQ-----MTPGQASLGKAWISS 370 (436)
T ss_dssp HHHCEETTE-------EGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------TTC-----CCHHHHHHHHHHHHH
T ss_pred HHhCeeCCc-------chhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------CCC-----CchHHHHHHHHHHHH
Confidence 999999998 9999999999999999999999998877765543 232 224557899999999
Q ss_pred HHHHHHHHHHHHcccccccccCCcccccccccccccccccccchHHHHHHHHHH
Q 017243 161 ATADGIEECRKLCGGHGYLCSSGLPELFAVYVPACTYEGDNIVLLLQVARFLMK 214 (375)
Q Consensus 161 ~~~~~~~~~r~~~GG~G~~~~~~l~~~~~d~~~~~t~EGdn~Vl~~~iar~ll~ 214 (375)
.+.++++.|+|+|||.||+.+++++++++|++...+++|+++|++..++|.+++
T Consensus 371 ~a~~v~~~a~q~~Gg~G~~~e~~l~r~~Rda~~~~i~~Gt~ei~~~~iar~llg 424 (436)
T 2ix5_A 371 KARETASLGRELLGGNGILADFLVAKAFCDLEPIYTYEGTYDINTLVTGREVTG 424 (436)
T ss_dssp HHHHHHHHHHHHTGGGGGBGGGSHHHHHHHHHHHHHSSSCHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCccccccCChHHHHHHHhhcceeecCHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999999999999999999999999998864
No 26
>3p4t_A Putative acyl-COA dehydrogenase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: FAO; 1.70A {Mycobacterium smegmatis} PDB: 3oib_A*
Probab=99.95 E-value=2.5e-27 Score=232.84 Aligned_cols=179 Identities=19% Similarity=0.202 Sum_probs=160.0
Q ss_pred CCCCcCCCCCcCceEEeccCcccCcccccCcccccCCCceeecCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 017243 1 MKFGNGAYNTMDNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRY 80 (375)
Q Consensus 1 ~k~G~~~~~~~dng~i~Fd~vRIP~~~lL~~~~~v~~~G~~~~~~~~~~~~~~~l~~~R~~~~~~~~~~~~~al~ia~rY 80 (375)
+++| +++.+++.|.||||+||.+++||..+ +| +. ..+..+..+|+.+++.++|.++++++.+++|
T Consensus 221 ~~~G---~~~~~~~~v~fddv~Vp~~~~lg~~~----~g-------~~-~~~~~l~~~r~~~aa~~~G~a~~al~~a~~~ 285 (403)
T 3p4t_A 221 DKMG---WRSSDTAELSYTDVRVPVANLVGSEN----TG-------FA-QIAAAFVAERVGLATQAYAGAQRCLDLTVEW 285 (403)
T ss_dssp CBSS---CTTSCEEEEEEEEEEEEGGGEESSTT----CH-------HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred Cccc---CCCCCeeEEEEcceEecHHHcCCCCC----ch-------HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4788 99999999999999999999998532 23 44 6777889999999999999999999999999
Q ss_pred hccccccCCCCCCCCccccccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCChhhHHHHhhhhhHHHHH
Q 017243 81 SAVRRQFGSKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTT 160 (375)
Q Consensus 81 a~~R~qfg~~~~~~e~~i~~~q~~q~~L~~~la~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~K~~~t~ 160 (375)
++.|+|||. ||.++|.+|++|+++.+.+++.+.+..++.+.++ .++. .....++++|+++++
T Consensus 286 a~~R~~fg~-------pi~~~q~vq~~la~~~~~~~aar~~~~~aa~~~d-------~~~~----~~~~~~~~aK~~a~~ 347 (403)
T 3p4t_A 286 CRNRDTFGR-------PLISRQAVQNTLAGMARRIDVARVYTRHVVERQL-------AGET----NLIAEVCFAKNTAVE 347 (403)
T ss_dssp HHHCEETTE-------EGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------TTCC----CCHHHHHHHHHHHHH
T ss_pred HHhCccCCC-------cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------CCCC----CchhHHHHHHHHHHH
Confidence 999999999 9999999999999999999999998877765542 3321 115668999999999
Q ss_pred HHHHHHHHHHHHcccccccccCCcccccccccccccccccccchHHHHHHHH
Q 017243 161 ATADGIEECRKLCGGHGYLCSSGLPELFAVYVPACTYEGDNIVLLLQVARFL 212 (375)
Q Consensus 161 ~~~~~~~~~r~~~GG~G~~~~~~l~~~~~d~~~~~t~EGdn~Vl~~~iar~l 212 (375)
.+.++++.|+|+|||.||+.++++++++||++...|++|+++|++..+++.+
T Consensus 348 ~a~~v~~~a~q~~Gg~g~~~~~~~~r~~Rda~~~~i~~Gt~ei~~~~ia~~l 399 (403)
T 3p4t_A 348 AGEWVANQAVQLFGGMGYMAESEVERQYRDMRILGIGGGTTEILTSLAAKTL 399 (403)
T ss_dssp HHHHHHHHHHHHHGGGGGBTTSHHHHHHHHHTTTTTTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhChhhccCCCcHHHHHHHhhcceeccCHHHHHHHHHHHHc
Confidence 9999999999999999999999999999999999999999999999999976
No 27
>2eba_A Putative glutaryl-COA dehydrogenase; thermus thermophilius, FAD, STRU genomics, NPPSFA; HET: FAD; 2.21A {Thermus thermophilus}
Probab=99.95 E-value=4.4e-27 Score=229.66 Aligned_cols=179 Identities=20% Similarity=0.152 Sum_probs=159.7
Q ss_pred CCCCcCCCCCcCceEEeccCcccCcccccCcccccCCCceeecCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 017243 1 MKFGNGAYNTMDNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRY 80 (375)
Q Consensus 1 ~k~G~~~~~~~dng~i~Fd~vRIP~~~lL~~~~~v~~~G~~~~~~~~~~~~~~~l~~~R~~~~~~~~~~~~~al~ia~rY 80 (375)
+|+| +++.+++.|.||||+||.+++| ..+ +| ++ ..+..+..+|+.+++.++|.++++++.+++|
T Consensus 203 ~~~G---~~~~~~~~v~f~~v~Vp~~~~l-~~~----~g-------~~-~~~~~l~~~r~~~aa~~~G~a~~al~~a~~y 266 (385)
T 2eba_A 203 RKMS---LRASVTSELVLEEVRVPESLRL-PKA----LG-------LK-APLSCLTQARFGIAWGAMGALEAVYEEAVAF 266 (385)
T ss_dssp SBSS---SCSSCEEEEEEEEEEEEGGGBC-TTC----CS-------TH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccc---cccCceeEEEEccEEEcHHHcc-CCC----ch-------HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3688 9999999999999999999999 321 33 45 6677888999999999999999999999999
Q ss_pred hccccccCCCCCCCCccccccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCChhhHHHHhhhhhHHHHH
Q 017243 81 SAVRRQFGSKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTT 160 (375)
Q Consensus 81 a~~R~qfg~~~~~~e~~i~~~q~~q~~L~~~la~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~K~~~t~ 160 (375)
+..|+|||. ||.++|.+|++|+++.+..++.+.+..++.+.++ .+. +....++++|.++++
T Consensus 267 a~~R~~fg~-------~i~~~q~vq~~la~~~~~~~aar~~~~~aa~~~d-------~g~-----~~~~~~~~aK~~a~~ 327 (385)
T 2eba_A 267 AKSRSTFGE-------PLAKKQLVQAKLAEMLAWHTEGLLLAWRLARLKD-------EGK-----LTPAQVSLAKRQNVW 327 (385)
T ss_dssp HHHCBSSSS-------BGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------TTC-----CCHHHHHHHHHHHHH
T ss_pred HhhCeeCCe-------eHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------CCC-----CchHHHHHHHHHHHH
Confidence 999999998 9999999999999999999999998877765442 232 234568899999999
Q ss_pred HHHHHHHHHHHHcccccccccCCcccccccccccccccccccchHHHHHHHHHH
Q 017243 161 ATADGIEECRKLCGGHGYLCSSGLPELFAVYVPACTYEGDNIVLLLQVARFLMK 214 (375)
Q Consensus 161 ~~~~~~~~~r~~~GG~G~~~~~~l~~~~~d~~~~~t~EGdn~Vl~~~iar~ll~ 214 (375)
.+.++++.|+|+|||.||+.++++++++||++...+++|+++|++..+++.+++
T Consensus 328 ~a~~v~~~a~q~~Gg~g~~~~~~l~r~~Rda~~~~~~~G~~~~~~~~ia~~llg 381 (385)
T 2eba_A 328 KALQAARMARDILGGSGITLEYHAIRHMLNLETVYTYEGTHDVHTLVLGREITG 381 (385)
T ss_dssp HHHHHHHHHHHHHGGGGGBTTSSHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCcccCCcChHHHHHHhccCceeeCChHHHHHHHHHHHHhC
Confidence 999999999999999999999999999999999999999999999999998864
No 28
>1siq_A GCD, glutaryl-COA dehydrogenase; acyl-COA dehydrogenase, decarboxylation, flavin protein, oxidoreductase; HET: FAD; 2.10A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1 PDB: 2r0n_A* 1sir_A* 2r0m_A*
Probab=99.94 E-value=3.7e-27 Score=230.72 Aligned_cols=179 Identities=20% Similarity=0.178 Sum_probs=159.5
Q ss_pred CCCCcCCCCCcCceEEeccCcccCcccccCcccccCCCceeecCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 017243 1 MKFGNGAYNTMDNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRY 80 (375)
Q Consensus 1 ~k~G~~~~~~~dng~i~Fd~vRIP~~~lL~~~~~v~~~G~~~~~~~~~~~~~~~l~~~R~~~~~~~~~~~~~al~ia~rY 80 (375)
+|+| +++.+++.|.||||+||.+++|+.. +| +. ..+..+..+|+.+++.++|.++++++.+++|
T Consensus 206 ~~~G---~~~~~~~~v~fd~v~Vp~~~~lg~~-----~g-------~~-~~~~~l~~~r~~~aa~~~G~a~~al~~a~~y 269 (392)
T 1siq_A 206 GKFS---LRASATGMIIMDGVEVPEENVLPGA-----SS-------LG-GPFGCLNNARYGIAWGVLGASEFCLHTARQY 269 (392)
T ss_dssp CCSS---STTSCEEEEEEEEEEEEGGGBCTTC-----CS-------SH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccc---ccCCceEEEEEccEEECHHHcCCcc-----cC-------HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3688 9999999999999999999999742 24 44 5677888999999999999999999999999
Q ss_pred hccccccCCCCCCCCccccccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCChhhHHHHhhhhhHHHHH
Q 017243 81 SAVRRQFGSKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTT 160 (375)
Q Consensus 81 a~~R~qfg~~~~~~e~~i~~~q~~q~~L~~~la~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~K~~~t~ 160 (375)
+..|+|||. ||.++|.+|++|+++.+.+++.+.+..++.+.++ .++ +....++++|+++++
T Consensus 270 a~~R~~fG~-------~i~~~q~vq~~la~~~~~~~~ar~~~~~aa~~~d-------~~~-----~~~~~~~~aK~~~~~ 330 (392)
T 1siq_A 270 ALDRMQFGV-------PLARNQLIQKKLADMLTEITLGLHACLQLGRLKD-------QDK-----AAPEMVSLLKRNNCG 330 (392)
T ss_dssp HHHCEETTE-------EGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------TTC-----CCHHHHHHHHHHHHH
T ss_pred HhcCeeCCc-------chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------CCC-----cchHHHHHHHHHHHH
Confidence 999999998 9999999999999999999999988777655442 232 234567999999999
Q ss_pred HHHHHHHHHHHHcccccccccCCcccccccccccccccccccchHHHHHHHHHH
Q 017243 161 ATADGIEECRKLCGGHGYLCSSGLPELFAVYVPACTYEGDNIVLLLQVARFLMK 214 (375)
Q Consensus 161 ~~~~~~~~~r~~~GG~G~~~~~~l~~~~~d~~~~~t~EGdn~Vl~~~iar~ll~ 214 (375)
.+.+++++|+|+|||+||+.++++++++||++...+++|++++++..+++.+++
T Consensus 331 ~a~~v~~~a~q~~Gg~g~~~~~~l~r~~Rd~~~~~~~~G~~~~~~~~i~~~llg 384 (392)
T 1siq_A 331 KALDIARQARDMLGGNGISDEYHVIRHAMNLEAVNTYEGTHDIHALILGRAITG 384 (392)
T ss_dssp HHHHHHHHHHHHTGGGGGSGGGSHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCccccCCCcHHHHHhhCcCCeeecCcHHHHHHHHHHHHhC
Confidence 999999999999999999999999999999999999999999999999998864
No 29
>1r2j_A Protein FKBI; polyketide synthase, polyketide, acyl-COA dehydrogenase, , aldehyde dehydrogenase, oxidoreductase; HET: FAD; 2.10A {Streptomyces hygroscopicus} SCOP: a.29.3.1 e.6.1.1
Probab=99.94 E-value=2.7e-27 Score=229.72 Aligned_cols=181 Identities=16% Similarity=0.173 Sum_probs=156.5
Q ss_pred CCCCcCCCCCcCceEEeccCcccCcccccCcccccCCCceeecCCCchhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017243 1 MKFGNGAYNTMDNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLL-YGTMVYVRQTIVADASCALSRAVCIATR 79 (375)
Q Consensus 1 ~k~G~~~~~~~dng~i~Fd~vRIP~~~lL~~~~~v~~~G~~~~~~~~~~~~-~~~l~~~R~~~~~~~~~~~~~al~ia~r 79 (375)
+|+| +++.+++.|.||||+||.+++||+.+ +| +. .. +..+..+|+.+++.++|.++++++.+++
T Consensus 182 ~~~G---~r~~~~~~v~f~~v~Vp~~~~lg~~~----~g-------~~-~~~~~~l~~~r~~~aa~~~G~a~~al~~a~~ 246 (366)
T 1r2j_A 182 KPSG---CRAAGHADLHLDQVRVPAGAVLAGSG----AS-------LP-MLVAASLAYGRKSVAWGCVGILRACRTAAVA 246 (366)
T ss_dssp SCSS---STTSCCEEEEEEEEEEEGGGBCTTTT----SC-------TT-TTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcc---CCCCCeeEEEEeeEEEcHHHcCCCCC----cc-------HH-HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4688 99999999999999999999998532 23 44 45 6778899999999999999999999999
Q ss_pred hhccccccCCCCCCCCccccccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCChhhHHHHhhhhhHHHH
Q 017243 80 YSAVRRQFGSKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTT 159 (375)
Q Consensus 80 Ya~~R~qfg~~~~~~e~~i~~~q~~q~~L~~~la~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~K~~~t 159 (375)
|++.|+|||. ||.++|.+|++|+++.+.+++.+.+..++.+.++ .++ .+....++++|++++
T Consensus 247 ya~~R~~fg~-------~i~~~q~v~~~la~~~~~~~~ar~~~~~aa~~~~-------~g~----~~~~~~~~~aK~~a~ 308 (366)
T 1r2j_A 247 HARTREQFGR-------PLGDHQLVAGHIADLWTAEQIAARVCEYASDHWD-------EGS----PEMVPATILAKHVAA 308 (366)
T ss_dssp HHTTCEETTE-------EGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHC------------------CHHHHHHHHHHHH
T ss_pred HHhcCccCCC-------chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------CCC----CcchHHHHHHHHHHH
Confidence 9999999998 9999999999999999999999998877665442 221 123456899999999
Q ss_pred HHHHHHHHHHHHHcccccccccCCcccccccccccccccccccchHHHHHHHHHH
Q 017243 160 TATADGIEECRKLCGGHGYLCSSGLPELFAVYVPACTYEGDNIVLLLQVARFLMK 214 (375)
Q Consensus 160 ~~~~~~~~~~r~~~GG~G~~~~~~l~~~~~d~~~~~t~EGdn~Vl~~~iar~ll~ 214 (375)
+.+.++++.|+|+|||.||+.++++++++||++...+++|+++|++..+++.+++
T Consensus 309 ~~a~~~~~~a~q~~Gg~g~~~~~~~~r~~Rda~~~~~~~G~~~~~~~~ia~~~lg 363 (366)
T 1r2j_A 309 ERAAAGAATAAQVLASAGAREGHVVERAYRDAKLMEIIEGSSEMCRVMLAQHALA 363 (366)
T ss_dssp HHHHHHHHHHHHHHGGGGC--CCHHHHHHHHHHHHHHSSSCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhhCCeeecCCCcHHHHHHhccCceecCCHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999999999998764
No 30
>3mpi_A Glutaryl-COA dehydrogenase; alpha-beta fold, oxidoreductase; HET: FAD GRA; 2.05A {Desulfococcus multivorans} PDB: 3mpj_A*
Probab=99.94 E-value=1.2e-26 Score=227.52 Aligned_cols=179 Identities=18% Similarity=0.254 Sum_probs=159.8
Q ss_pred CCCCcCCCCCcCceEEeccCcccCcccccCcccccCCCceeecCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 017243 1 MKFGNGAYNTMDNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRY 80 (375)
Q Consensus 1 ~k~G~~~~~~~dng~i~Fd~vRIP~~~lL~~~~~v~~~G~~~~~~~~~~~~~~~l~~~R~~~~~~~~~~~~~al~ia~rY 80 (375)
+++| +++.+++.|.||||+||.+++||..+ +| +. ..+..+...|+.+++.++|.++++++.+++|
T Consensus 203 ~~~G---~~~~~~~~v~fddv~Vp~~~~lg~~~----~g-------~~-~~~~~~~~~r~~~aa~~lG~a~~al~~a~~~ 267 (397)
T 3mpi_A 203 EKLG---SHASPTGELFLDNVKVPKENILGKPG----DG-------AR-IVFGSLNHTRLSAAAGGVGLAQACLDAAIKY 267 (397)
T ss_dssp CCSS---CTTSCEEEEEEEEEEEEGGGEESSTT----CH-------HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccc---CcCCceeEEEEeeEEECHHHcCCCCC----ch-------HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4788 99999999999999999999998532 23 45 6778889999999999999999999999999
Q ss_pred hccccccCCCCCCCCccccccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCChhhHHHHhhhhhHHHHH
Q 017243 81 SAVRRQFGSKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTT 160 (375)
Q Consensus 81 a~~R~qfg~~~~~~e~~i~~~q~~q~~L~~~la~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~K~~~t~ 160 (375)
++.|+|||. ||.++|.+|++|+++.+.+++.+.+..++.+.++ .++ .+....++++|+++++
T Consensus 268 a~~R~~fg~-------~i~~~q~vq~~la~~~~~~~aar~~~~~aa~~~~-------~~~----~~~~~~~~~aK~~a~~ 329 (397)
T 3mpi_A 268 CNERRQFGK-------PIGDFQMNQDMIAQMAVEVEAARLLAYKAAAAKD-------EGR----LNNGLDVAMAKYAAGE 329 (397)
T ss_dssp HHHCEETTE-------EGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------TTC----TEEHHHHHHHHHHHHH
T ss_pred HhhCcccCC-------chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------CCC----CccHHHHHHHHHHHHH
Confidence 999999998 9999999999999999999999988777655442 221 2345678999999999
Q ss_pred HHHHHHHHHHHHcccccccccCCcccccccccccccccccccchHHHHH-HHH
Q 017243 161 ATADGIEECRKLCGGHGYLCSSGLPELFAVYVPACTYEGDNIVLLLQVA-RFL 212 (375)
Q Consensus 161 ~~~~~~~~~r~~~GG~G~~~~~~l~~~~~d~~~~~t~EGdn~Vl~~~ia-r~l 212 (375)
.+.++++.|+|+|||.||+.++++++++||++...|++|+++|++..|+ |.+
T Consensus 330 ~a~~~~~~a~q~~Gg~g~~~~~~~~r~~Rda~~~~i~~Gt~ei~~~~ia~~~l 382 (397)
T 3mpi_A 330 AVSKCANYAMRILGAYGYSTEYPVARFYRDAPTYYMVEGSANICKMIIALDQL 382 (397)
T ss_dssp HHHHHHHHHHHHHGGGGGSTTSHHHHHHHHTTHHHHSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCeeecCCCCHHHHHhhccceeeecCHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999999999 765
No 31
>2or0_A Hydroxylase; APC7385, rhodococcus SP. RHA1, structu genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE; 2.10A {Rhodococcus SP}
Probab=99.94 E-value=1.3e-26 Score=228.48 Aligned_cols=198 Identities=11% Similarity=-0.051 Sum_probs=162.3
Q ss_pred CCCCcCCCCCcCceEEeccCcccCcccccCcccccCC--CceeecCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017243 1 MKFGNGAYNTMDNGVLRFEHVRIPRNQMLMRVSQVTR--EGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIAT 78 (375)
Q Consensus 1 ~k~G~~~~~~~dng~i~Fd~vRIP~~~lL~~~~~v~~--~G~~~~~~~~~~~~~~~l~~~R~~~~~~~~~~~~~al~ia~ 78 (375)
+|+| +++.+++.|.||||+||.+++|+....++. .|.+...+ +. ..+..+..+|+.+++.++|.++++++.++
T Consensus 200 ~~~G---~r~~~~~~v~fd~v~VP~~~~lg~~~~~~g~~~g~~~~~g-~~-~~~~~~~~~r~~~aa~~lG~a~~al~~a~ 274 (414)
T 2or0_A 200 DVIG---LRGTGSKDLIVDGAFVPGYRTLNAAKVMDGRAQKEAGRPE-PL-FNMPYSCMFPLGITAAVIGITEGALACHI 274 (414)
T ss_dssp CBSS---CGGGCCEEEEEEEEEEEGGGEEEHHHHHHSHHHHHHTCSC-SG-GGSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccc---CcccCCCcEEEccEEecHHHeeccccccccCCCccccCCC-cc-ccccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4788 999999999999999999999975211000 01000001 22 33445678999999999999999999999
Q ss_pred Hhhcccccc-CCCCCCCCccccccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCChhhHHHHhhhhhHH
Q 017243 79 RYSAVRRQF-GSKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSL 157 (375)
Q Consensus 79 rYa~~R~qf-g~~~~~~e~~i~~~q~~q~~L~~~la~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~K~~ 157 (375)
+|+..|+|| |. ||.++|.+|++|+++.+.+++.+.+..++.+.+++.. ..++. ...+....++++|++
T Consensus 275 ~ya~~R~~f~G~-------~i~~~q~vq~~la~~~~~~~aar~l~~~aa~~~~~~~---~~g~~-~~~~~~~~~~~aK~~ 343 (414)
T 2or0_A 275 AVQKDRVAITGQ-------KIKEDPYVLSAIGESAAEINASRVSLIETADRFYDKV---DAGKE-ITFEERAIGRRTQIA 343 (414)
T ss_dssp HHHTTCBCTTSC-------BGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HTTCC-CCHHHHHHHHHHHHH
T ss_pred HHHhcCCCCCCC-------ccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hcCCC-CCHHHHHHHHHHHHH
Confidence 999999999 87 9999999999999999999999999888776664321 12321 113456778999999
Q ss_pred HHHHHHHHHHHHHHHcccccccccCCcccccccccccccccc-cccchHHHHHHHHHH
Q 017243 158 TTTATADGIEECRKLCGGHGYLCSSGLPELFAVYVPACTYEG-DNIVLLLQVARFLMK 214 (375)
Q Consensus 158 ~t~~~~~~~~~~r~~~GG~G~~~~~~l~~~~~d~~~~~t~EG-dn~Vl~~~iar~ll~ 214 (375)
+++.+.++++.|+|+|||+||+.++++++++||++...+++| ++++++..+++.+++
T Consensus 344 a~e~a~~v~~~a~q~~Gg~g~~~~~~l~r~~Rda~~~~~~~G~t~~~~~~~ia~~~lg 401 (414)
T 2or0_A 344 AAWRAVRAADEIFARAGGGALHYKTPMQRFWRDAHAGLAHAVHVPGPTNHASALTQLG 401 (414)
T ss_dssp HHHHHHHHHHHHHTTSCGGGGBTTSSHHHHHHHHHHHHTSGGGCCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhhChHhhccCCchhHHHHHHHHHHcCCcccchHHHHHHHHHHhC
Confidence 999999999999999999999999999999999999999999 999999999998874
No 32
>2rfq_A 3-HSA hydroxylase, oxygenase; rhodococcus SP. RHA1, structural genomics protein structure initiative, midwest center for structural genomics, MCSG; HET: 1PS; 1.65A {Rhodococcus SP} PDB: 3aff_A 3afe_A
Probab=99.94 E-value=2.5e-26 Score=224.89 Aligned_cols=198 Identities=12% Similarity=-0.066 Sum_probs=162.3
Q ss_pred CCCCcCCCCCcCceEEeccCcccCcccccCcccccC--CCceeecCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017243 1 MKFGNGAYNTMDNGVLRFEHVRIPRNQMLMRVSQVT--REGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIAT 78 (375)
Q Consensus 1 ~k~G~~~~~~~dng~i~Fd~vRIP~~~lL~~~~~v~--~~G~~~~~~~~~~~~~~~l~~~R~~~~~~~~~~~~~al~ia~ 78 (375)
+|+| +++.+++.|.||||+||.+++|+.....+ ..|.+...+ +. ..+..+..+|+.+++.++|.++++++.++
T Consensus 183 ~~~G---~~~~~~~~v~fd~v~Vp~~~~lg~~~~~~g~~~g~~~~~g-~~-~~~~~~~~~r~~~aa~~~G~a~~al~~a~ 257 (394)
T 2rfq_A 183 NVVG---LRGTGSNTVVVEDVFVPTHRVLSFKAMSNLTAPGLERNTA-PV-YKMPWGTIHPTTISAPIVGMAYGAYDAHV 257 (394)
T ss_dssp CBSS---CGGGCCEEEEEEEEEEEGGGEEEHHHHHTTCCGGGTTCCC-GG-GGSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccc---cccCCCCceEEcceEcChHHhcccccccccCCCCcccCCC-cc-ccccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4688 99999999999999999999997521000 011100001 22 23345678999999999999999999999
Q ss_pred Hhhcccc---ccCCCCCCCCccccccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCChhhHHHHhhhhh
Q 017243 79 RYSAVRR---QFGSKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLK 155 (375)
Q Consensus 79 rYa~~R~---qfg~~~~~~e~~i~~~q~~q~~L~~~la~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~K 155 (375)
+|+..|+ |||. ||.++|.+|++|+++.+..++.+.+..++.+.++... ..++. ...+.+..++++|
T Consensus 258 ~ya~~R~~~~~fG~-------~i~~~q~vq~~la~~~~~~~aar~~~~~aa~~~~~~~---~~g~~-~~~~~~~~~~~aK 326 (394)
T 2rfq_A 258 EHQGKRVRAAFAGE-------KAKDDPFAKVRIAEASSDIDAAWRQLSGNVADEYALL---VAGEE-VPFELRLRARRDQ 326 (394)
T ss_dssp HHHHHHHHHSCTTC-------GGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HTTCC-CCHHHHHHHHHHH
T ss_pred HHhccCCcCCCCCc-------ccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hcCCC-CCHHHHHHHHHHH
Confidence 9999999 9998 9999999999999999999999999888876664321 12321 1134566789999
Q ss_pred HHHHHHHHHHHHHHHHHcccccccccCCcccccccccccccccc-cccchHHHHHHHHHH
Q 017243 156 SLTTTATADGIEECRKLCGGHGYLCSSGLPELFAVYVPACTYEG-DNIVLLLQVARFLMK 214 (375)
Q Consensus 156 ~~~t~~~~~~~~~~r~~~GG~G~~~~~~l~~~~~d~~~~~t~EG-dn~Vl~~~iar~ll~ 214 (375)
+++++.+.++++.|+|+|||+||+.++++++++||++...+++| ++++++..+++.+++
T Consensus 327 ~~a~~~a~~~~~~a~q~~Gg~g~~~~~~l~r~~Rda~~~~~~~g~~~~~~~~~i~~~llg 386 (394)
T 2rfq_A 327 VRATGRAISSIDKLFESSGATALANGTPLQRFWRDAHAGRVHAANDPERAYVMYGTGEFG 386 (394)
T ss_dssp HHHHHHHHHHHHHHHHHHGGGGGBTTCHHHHHHHHHHHHTTSGGGCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHhChhhhhcCCcHHHHHHHHHHHHcccccCchhHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999 999999999998774
No 33
>2jbr_A P-hydroxyphenylacetate hydroxylase C2 oxygenase C; flavoenzyme hydroxylase, oxidoreductase; 2.3A {Acinetobacter baumannii} PDB: 2jbs_A* 2jbt_A*
Probab=99.93 E-value=7.8e-26 Score=223.47 Aligned_cols=199 Identities=13% Similarity=0.003 Sum_probs=162.6
Q ss_pred CCCCcCCCCCcCceEEeccCcccCcccccCcccccC--CCceeecCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017243 1 MKFGNGAYNTMDNGVLRFEHVRIPRNQMLMRVSQVT--REGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIAT 78 (375)
Q Consensus 1 ~k~G~~~~~~~dng~i~Fd~vRIP~~~lL~~~~~v~--~~G~~~~~~~~~~~~~~~l~~~R~~~~~~~~~~~~~al~ia~ 78 (375)
+|+| +++.+++.|.||||+||.+++|+....++ +.|.......+. ..+..+..+|+.+++.++|.++++++.++
T Consensus 211 ~~~G---~r~~~~~~v~fddv~VP~~~~lg~~~~~~g~~~g~g~~~~~~~-~~~~~~~~~r~~~aa~~lG~a~~al~~a~ 286 (422)
T 2jbr_A 211 YAQA---IKSSGSKMLKLVNVFIPEYRISKAKDMMEGKSAGFGLYPDSKI-FYTPYRPYFASGFSAVSLGIAERMIEAFK 286 (422)
T ss_dssp CBSS---SGGGCCEEEEEEEEEEEGGGEEEHHHHHHTCSTTTTSCTTCSS-SSSCHHHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred cccC---cCCCCCCcEEEeeEEecHHHeecccccccCCCCcccccCCCcc-cccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678 99999999999999999999998631110 012100000122 33456778899999999999999999999
Q ss_pred Hhhcccc--ccCCCCCCCCccccccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCChhhHHHHhhhhhH
Q 017243 79 RYSAVRR--QFGSKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKS 156 (375)
Q Consensus 79 rYa~~R~--qfg~~~~~~e~~i~~~q~~q~~L~~~la~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~K~ 156 (375)
+|++.|+ |||. ||.++|.+|++|+++.+.+++.+.+..++.+.++... ..++. ...+....++++|+
T Consensus 287 ~ya~~R~~~~fG~-------~i~~~q~vq~~la~~~~~~~aar~~~~~aa~~~d~~~---~~g~~-~~~~~~~~~~~aK~ 355 (422)
T 2jbr_A 287 EKQRNRVRAYTGA-------NVGLATPALMRIAESTHQVAAARALLEKTWEDHRIHG---LNHQY-PNKETLAFWRTNQA 355 (422)
T ss_dssp HHHTTCBCTTTCC-------BCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HTTCC-CCHHHHHHHHHHHH
T ss_pred HHHhcCCCCCCCC-------ccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hcCCC-CCHHHHHHHHHHHH
Confidence 9999998 9998 9999999999999999999999999888776654321 12321 11345667899999
Q ss_pred HHHHHHHHHHHHHHHHcccccccccCCcccccccccccccccccc-cchHHHHHHHHHH
Q 017243 157 LTTTATADGIEECRKLCGGHGYLCSSGLPELFAVYVPACTYEGDN-IVLLLQVARFLMK 214 (375)
Q Consensus 157 ~~t~~~~~~~~~~r~~~GG~G~~~~~~l~~~~~d~~~~~t~EGdn-~Vl~~~iar~ll~ 214 (375)
++++.+.++++.|+|+|||.||+.++++++++||++...+++|++ ++++..+++.+++
T Consensus 356 ~a~e~a~~v~~~a~q~~Gg~g~~~~~~l~r~~Rda~~~~~~~G~~~e~~~~~ia~~~lg 414 (422)
T 2jbr_A 356 YAVKMCIEAVDRLMAAAGATSFMDNSELQRLFRDAHMTGAHAYTDYDVCAQILGRELMG 414 (422)
T ss_dssp HHHHHHHHHHHHHHTTSCGGGGBTTCHHHHHHHHHHHHTSSTTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHhCHHhhhcCCcHHHHHHHHHHHhcCCccchhHHHHHHHHHHhC
Confidence 999999999999999999999999999999999999999999999 9999999998764
No 34
>3djl_A Protein AIDB; alpha helix, beta-barrel, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.70A {Escherichia coli} PDB: 3u33_A*
Probab=99.92 E-value=1.6e-25 Score=226.91 Aligned_cols=183 Identities=20% Similarity=0.186 Sum_probs=160.4
Q ss_pred CCCCcCCCCCcCceEEeccCcccCcccccCcccccCCCceeecCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 017243 1 MKFGNGAYNTMDNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRY 80 (375)
Q Consensus 1 ~k~G~~~~~~~dng~i~Fd~vRIP~~~lL~~~~~v~~~G~~~~~~~~~~~~~~~l~~~R~~~~~~~~~~~~~al~ia~rY 80 (375)
+|+| +++.++++|.||||+ +++||+.+ +| +. ..+..|..+|+.+++.++|.++++++.+++|
T Consensus 259 ~~~G---~rgt~s~~v~fddv~---~~llG~~g----~G-------~~-~~~~~l~~~Rl~~aa~~~G~a~~al~~a~~y 320 (541)
T 3djl_A 259 DKLG---NRSNASCEVEFQDAI---GWLLGLEG----EG-------IR-LILKMGGMTRFDCALGSHAMMRRAFSLAIYH 320 (541)
T ss_dssp CCSS---CTTSCEEEEEEEEEE---EEEESSTT----CH-------HH-HTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCC---CcCCceeEEEEccce---eeeeecCC----ch-------HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4788 999999999999996 89998532 23 45 6677889999999999999999999999999
Q ss_pred hccccccCCCCCCCCccccccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC-CChhhHHHHhhhhhHHHH
Q 017243 81 SAVRRQFGSKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDF-STLPEAHACTAGLKSLTT 159 (375)
Q Consensus 81 a~~R~qfg~~~~~~e~~i~~~q~~q~~L~~~la~~~a~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~s~~K~~~t 159 (375)
+..|+|||. ||+++|.+|++|+++.+.+++.+.+..++.+.++. +.. ......+..++++|++++
T Consensus 321 a~~R~~fG~-------~i~~~p~vq~~La~~~~~~eaaral~~~aa~~~d~-------~~~~~~~~~~~~~~~~aK~~as 386 (541)
T 3djl_A 321 AHQRHVFGN-------PLIQQPLMRHVLSRMALQLEGQTALLFRLARAWDR-------RADAKEALWARLFTPAAKFVIC 386 (541)
T ss_dssp HHHCEETTE-------EGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-------TTSHHHHHHHHHHHHHHHHHHH
T ss_pred HhhCccCCC-------chhhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-------cCChhhHHHHHHHHHHHHHHHH
Confidence 999999998 99999999999999999999999988877665532 211 011235677899999999
Q ss_pred HHHHHHHHHHHHHcccccccccCCcccccccccccccccccccchHHHHHHHHHHH
Q 017243 160 TATADGIEECRKLCGGHGYLCSSGLPELFAVYVPACTYEGDNIVLLLQVARFLMKT 215 (375)
Q Consensus 160 ~~~~~~~~~~r~~~GG~G~~~~~~l~~~~~d~~~~~t~EGdn~Vl~~~iar~ll~~ 215 (375)
+.+.+++++|+|+|||+||+.++++++++||+++..|+||+|+|+++.++|.+++.
T Consensus 387 e~a~~~~~~a~q~~Gg~G~~~e~~l~r~~Rda~~~~i~eGt~ei~~~~i~r~l~~~ 442 (541)
T 3djl_A 387 KRGMPFVAEAMEVLGGIGYCEESELPRLYREMPVNSIWEGSGNIMCLDVLRVLNKQ 442 (541)
T ss_dssp HHHHHHHHHHHHHHGGGGGSTTSHHHHHHHHHHHHHHGGGHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhhCCeeecCCCcHHHHHHhhhhhheeCCcHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999988754
No 35
>2c12_A Nitroalkane oxidase; oxidoreductase, flavoenzyme, acyl-COA dehydrogenase, long cell EDGE, FAD, inhibitor, flavoprotein; HET: SPM FAD PE4; 2.07A {Fusarium oxysporum} SCOP: a.29.3.1 e.6.1.1 PDB: 2c0u_A* 2zaf_A* 2reh_A* 3d9g_A* 3d9f_A* 3d9d_A* 3d9e_A* 3fcj_A*
Probab=99.92 E-value=1e-24 Score=216.45 Aligned_cols=183 Identities=15% Similarity=0.102 Sum_probs=155.1
Q ss_pred CCCCcCCCCCcCceEEeccCcccCcccccCcccccCCCceeecCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 017243 1 MKFGNGAYNTMDNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRY 80 (375)
Q Consensus 1 ~k~G~~~~~~~dng~i~Fd~vRIP~~~lL~~~~~v~~~G~~~~~~~~~~~~~~~l~~~R~~~~~~~~~~~~~al~ia~rY 80 (375)
+|+| +++.+++.|.||||+||.+++||+.+ +| +.......+..+|+.+++.++|.++++++.+++|
T Consensus 233 ~~~G---~r~~~~~~v~fddv~VP~~~~lg~~~----~g-------~~~~~~~~l~~~r~~~aa~~~G~a~~al~~a~~y 298 (439)
T 2c12_A 233 ELAG---HITTSGPHTRFTEFHVPHENLLCTPG----LK-------AQGLVETAFAMSAALVGAMAIGTARAAFEEALVF 298 (439)
T ss_dssp CBSS---CTTCCCCEEEEEEEEEEGGGBCSCTT----HH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccc---cCCCCceEEEEccEEecHHHcCCCCC----cc-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678 99999999999999999999998532 23 2103456788999999999999999999999999
Q ss_pred hcc-ccccCCCCCCCCccccccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCChhhHHHHhhhhhHHHH
Q 017243 81 SAV-RRQFGSKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTT 159 (375)
Q Consensus 81 a~~-R~qfg~~~~~~e~~i~~~q~~q~~L~~~la~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~K~~~t 159 (375)
++. |+|||. ||.++|.+|++|+++.+.+++.+.+..++.+.+ +.+.. ........++++|++++
T Consensus 299 a~~rr~~~G~-------~i~~~q~vq~~la~~~~~~~aar~~~~~aa~~~-------~~~~~-~~~~~~~~~~~aK~~a~ 363 (439)
T 2c12_A 299 AKSDTRGGSK-------HIIEHQSVADKLIDCKIRLETSRLLVWKAVTTL-------EDEAL-EWKVKLEMAMQTKIYTT 363 (439)
T ss_dssp HHHCCTTSSS-------CGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------TCTTS-CHHHHHHHHHHHHHHHH
T ss_pred HhhceeeCCe-------ehhccHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hCCCc-cchhhHHHHHHHHHHHH
Confidence 996 788888 999999999999999999999999877765543 23321 11123456899999999
Q ss_pred HHHHHHHHHHHHHcccccccccCCcccccccccccccccccc-cchHHHHHHHH
Q 017243 160 TATADGIEECRKLCGGHGYLCSSGLPELFAVYVPACTYEGDN-IVLLLQVARFL 212 (375)
Q Consensus 160 ~~~~~~~~~~r~~~GG~G~~~~~~l~~~~~d~~~~~t~EGdn-~Vl~~~iar~l 212 (375)
+.+.++++.|+|+|||.||+.++++++++||++...|++|+| ++++.++++.+
T Consensus 364 ~~a~~v~~~a~q~~Gg~g~~~~~~l~r~~Rda~~~~i~~G~~~~~~~~~i~~~l 417 (439)
T 2c12_A 364 DVAVECVIDAMKAVGMKSYAKDMSFPRLLNEVMCYPLFDGGNIGLRRRQMQRVM 417 (439)
T ss_dssp HHHHHHHHHHHHHHCGGGGBTTSSHHHHHHHHTTTTTSSSCTTTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCceEEcCCChHHHHHHhhhcceeecCChHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999998 69999998744
No 36
>3mxl_A Nitrososynthase; flavin monooxygenase, acyl-COA dehydrogenas oxidoreductase; 3.15A {Micromonospora carbonacea}
Probab=99.92 E-value=1.5e-24 Score=212.21 Aligned_cols=188 Identities=13% Similarity=0.056 Sum_probs=155.0
Q ss_pred CCCCcCCCCCcCceEEeccCcccCcccccCcccccCCCceeecCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 017243 1 MKFGNGAYNTMDNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRY 80 (375)
Q Consensus 1 ~k~G~~~~~~~dng~i~Fd~vRIP~~~lL~~~~~v~~~G~~~~~~~~~~~~~~~l~~~R~~~~~~~~~~~~~al~ia~rY 80 (375)
+|+| +++.+++.|.||||+||.+++||... .|. + +. ..+..+..+|+.+++.++|.++++++.+++|
T Consensus 204 ~~~G---~r~~~~~~v~f~~v~Vp~~~~lg~~~----~g~----g-~~-~~~~~~~~~r~~~aa~~~G~a~~al~~a~~~ 270 (395)
T 3mxl_A 204 DGLG---MRASGTLEVVFDRCPVRADELLERGP----VGA----R-RD-AVLAGQTVSSITMLGIYAGIAQAARDIAVGF 270 (395)
T ss_dssp CBSS---CTTSCCEEEEEEEEEECGGGCCEEEE----SSC----C-CT-THHHHHHHHHGGGHHHHHHHHHHHHHHHHHH
T ss_pred hhcC---CCCCCcceEEEcceEcCHHHhcCCCC----CCc----c-HH-HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4788 99999999999999999999998310 121 1 33 3454556689999999999999999999999
Q ss_pred hccccccCCCCCCCCccccccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCC-hhhHHHHhhhhhHHHH
Q 017243 81 SAVRRQFGSKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFST-LPEAHACTAGLKSLTT 159 (375)
Q Consensus 81 a~~R~qfg~~~~~~e~~i~~~q~~q~~L~~~la~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~s~~K~~~t 159 (375)
+. |. ||.++|.+|++|+++.+.+++.+.+..++.+.++....... ++... ..+....++++|++++
T Consensus 271 a~-----~r-------~i~~~q~vq~~la~~~~~~~aar~~~~~aa~~~d~~~~~~~-~~~~~~~~~~~~~~~~ak~~~~ 337 (395)
T 3mxl_A 271 CA-----GR-------GGEPRAGARALVAGLDTRLYALRTTVGAALTNADAASVDLS-GDPDERGRRMMTPFQYAKMTVN 337 (395)
T ss_dssp HH-----TT-------CSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC-SCTTHHHHHHHHHHHHHHHHHH
T ss_pred Hc-----CC-------CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccc-cCccccchhHHHHHHHHHHHHH
Confidence 97 44 89999999999999999999999998887766654321111 11111 1234467889999999
Q ss_pred HHHHHHHHHHHHHcccccccccCCcccccccccccc-cccccccchHHHHHHHHHH
Q 017243 160 TATADGIEECRKLCGGHGYLCSSGLPELFAVYVPAC-TYEGDNIVLLLQVARFLMK 214 (375)
Q Consensus 160 ~~~~~~~~~~r~~~GG~G~~~~~~l~~~~~d~~~~~-t~EGdn~Vl~~~iar~ll~ 214 (375)
+.+.++++.|+|+|||+||+.++++++++||++... +++|+|++++.++++.+|+
T Consensus 338 ~~a~~~~~~a~q~~Gg~g~~~~~~~~r~~Rda~~~~~~~~g~~~~~~~~ia~~~Lg 393 (395)
T 3mxl_A 338 ELAPAVVDDCLSLVGGLAYTAGHPLSRLYRDVRAGGFMQPYSYVDAVDYLSGQALG 393 (395)
T ss_dssp HHHHHHHHHHHHHHCGGGGBTTSHHHHHHHHGGGGGGCSSCCHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHhChHhccCCCcHHHHHHHHHhccccCCCCHHHHHHHHHHHHhC
Confidence 999999999999999999999999999999999999 9999999999999998863
No 37
>3m9v_A FAD-dependent oxidoreductase; KIJD3, fatty acyl-COA dehydrogenase family, kijanose, kijani FAD, flavoprotein; HET: TYD; 2.05A {Actinomadura kijaniata}
Probab=99.89 E-value=2.8e-23 Score=206.09 Aligned_cols=189 Identities=12% Similarity=0.068 Sum_probs=153.2
Q ss_pred CCCCcCCCCCcCceEEeccCcccCcccccCcccccCCCceeecCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 017243 1 MKFGNGAYNTMDNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRY 80 (375)
Q Consensus 1 ~k~G~~~~~~~dng~i~Fd~vRIP~~~lL~~~~~v~~~G~~~~~~~~~~~~~~~l~~~R~~~~~~~~~~~~~al~ia~rY 80 (375)
+|+| +++.++++|.|||||||.+++|+... .|. + +. ..+..+..+|+.+++.++|.++++++.+++|
T Consensus 215 ~~~G---~~~~~~~~v~fddv~VP~~~~lg~~~----~g~----g-~~-~~~~~~~~~r~~~aa~~~G~a~~al~~a~~~ 281 (439)
T 3m9v_A 215 DGLG---MRASGTVDIVFDDCPIPADHVLMRDP----VGA----R-ND-AVLAGQTVSSVSVLGVYVGVAQAAYDTAVAA 281 (439)
T ss_dssp CCSS---CTTSCCEEEEEEEEEECGGGEEECCC------C----C-CG-GGHHHHHHHHGGGHHHHHHHHHHHHHHHHHH
T ss_pred ccCC---cCCCCceeEEEeeeEcCHHHccCCCC----CCc----h-HH-HHhhchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4788 99999999999999999999998321 221 1 22 2344455589999999999999999999999
Q ss_pred hccccccCCCCCCCCccccccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCC-hhhHHHHhhhhhHHHH
Q 017243 81 SAVRRQFGSKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFST-LPEAHACTAGLKSLTT 159 (375)
Q Consensus 81 a~~R~qfg~~~~~~e~~i~~~q~~q~~L~~~la~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~s~~K~~~t 159 (375)
+. |. ||.++|.+|++|+++.+.+++.+.+..++.+.++....... ++... .......++++|++++
T Consensus 282 a~-----~r-------~i~~~~~vq~~la~~~~~~~aar~l~~~aa~~~d~~~~~~~-~~~~~~~~~~~~~~~~ak~~a~ 348 (439)
T 3m9v_A 282 LE-----RR-------PEPPQAAALTLVAEIDSRLYALRATAGSALTAADALSADLS-GDMDERGRQMMRHFQCAKLAVN 348 (439)
T ss_dssp HH-----TC-------SSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCS-SCHHHHHHHHHHHHHHHHHHHH
T ss_pred Hc-----CC-------CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc-cccchhhhhHHHHHHHHHHHHH
Confidence 97 44 89999999999999999999999998877666543221100 11000 1234556789999999
Q ss_pred HHHHHHHHHHHHHcccccccccCCcccccccccccc-cccccccchHHHHHHHHHHH
Q 017243 160 TATADGIEECRKLCGGHGYLCSSGLPELFAVYVPAC-TYEGDNIVLLLQVARFLMKT 215 (375)
Q Consensus 160 ~~~~~~~~~~r~~~GG~G~~~~~~l~~~~~d~~~~~-t~EGdn~Vl~~~iar~ll~~ 215 (375)
+.+.+++++|+|+|||+||+.+++++++++|+++.. +++|+|+++...+++.++..
T Consensus 349 ~~a~~v~~~a~q~~Gg~G~~~~~~l~r~~Rda~~~~~~~~gt~~~~~~~i~~~~lg~ 405 (439)
T 3m9v_A 349 RLAPEIVSDCLSLVGGASYTAGHPLARLLRDVQAGRFMQPYAYVDAVDFLSAQALGI 405 (439)
T ss_dssp HHHHHHHHHHHHHHCGGGGSTTSHHHHHHHHTTGGGTSSSCCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhCHHHhcCCChHHHHHHHHHhhhhhCCCchHHHHHHHHHHHhCC
Confidence 999999999999999999999999999999999999 99999999999999988754
No 38
>2yyk_A 4-hydroxyphenylacetate-3-hydroxylase; structurome, riken spring-8 center, oxygnase component, 4- hydroxyphenylacetate 3-monooxygenase; 1.60A {Thermus thermophilus} PDB: 2yyl_A* 2yym_A* 2yyi_A* 2yyg_A* 2yyj_A*
Probab=99.69 E-value=1.1e-16 Score=159.94 Aligned_cols=173 Identities=10% Similarity=0.005 Sum_probs=132.2
Q ss_pred CCC-cCceEEeccCcccCcccccCcccccCCCceeecCCCchhHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 017243 8 YNT-MDNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLL--YGTMVYVRQTIVADASCALSRAVCIATRYSAVR 84 (375)
Q Consensus 8 ~~~-~dng~i~Fd~vRIP~~~lL~~~~~v~~~G~~~~~~~~~~~~--~~~l~~~R~~~~~~~~~~~~~al~ia~rYa~~R 84 (375)
.+. .++++|.|||||||.+|+|+- +. .|. + +. .. ...+..+|+.+++.+++.+..++.+|.+|+..
T Consensus 241 ~r~~~~~~~v~FddV~VP~e~vl~~-G~---~~~----g-~~-~~~~~~~l~~~r~~~~~~~~g~a~~~lg~a~~~~~~- 309 (481)
T 2yyk_A 241 SRVEEMDCLVIFDDVLVPWERVFIL-GN---VEL----C-NN-AYGATGALNHMAHQVVALKTAKTEAFLGVAALMAEG- 309 (481)
T ss_dssp TTCCCCEEEEEEEEEEEEGGGEEEE-SC---HHH----H-HH-HHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred ccCCCCeEEEEEccEEECHHHccCC-CC---ccH----H-HH-HHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHh-
Confidence 554 788999999999999999941 11 121 0 22 22 45678899999999999999999999988863
Q ss_pred cccCCCCCCCCccccccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCChhhHHHHhhhhhHHHHHHHHH
Q 017243 85 RQFGSKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATAD 164 (375)
Q Consensus 85 ~qfg~~~~~~e~~i~~~q~~q~~L~~~la~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~K~~~t~~~~~ 164 (375)
. +|.++|.+|++|++|.+.+++++.+..++.+.. +..+.....+....++++|.++++.+.+
T Consensus 310 ----~-------gi~~~q~vq~~laem~~~leaar~l~~~aa~~~-------d~~~~G~~~~~~~~~s~aK~~a~e~a~~ 371 (481)
T 2yyk_A 310 ----I-------GADVYGHVQEKIAEIIVYLEAMRAFWTRAEEEA-------KENAYGLLVPDRGALDGARNLYPRLYPR 371 (481)
T ss_dssp ----T-------TGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHTC-------EECTTSCEECCHHHHHHHHHHHHHHHHH
T ss_pred ----c-------ChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHcc-------cccccCCcCccHHHHHHHHHHHHHHHHH
Confidence 2 589999999999999999999999877665432 2211111112345689999999999999
Q ss_pred HHHHHHHHcccccccccCCcccccccccccc------cccccccchHHHHHHHH
Q 017243 165 GIEECRKLCGGHGYLCSSGLPELFAVYVPAC------TYEGDNIVLLLQVARFL 212 (375)
Q Consensus 165 ~~~~~r~~~GG~G~~~~~~l~~~~~d~~~~~------t~EGdn~Vl~~~iar~l 212 (375)
+++.|+|++||.|++ .|+++.| |.+... .++|.+++.+..++|.+
T Consensus 372 v~~~a~qi~Gg~g~~--~p~e~~~-~~~i~~~l~~~l~~~g~~~~~r~~i~rl~ 422 (481)
T 2yyk_A 372 IREILEQIGASGLIT--LPSEKDF-KGPLGPFLEKFLQGAALEAKERVALFRLA 422 (481)
T ss_dssp HHHHHHHHHGGGGSC--CCCHHHH-HSTTHHHHHHHSCBTTBCHHHHHHHHHHH
T ss_pred HHHHHHHHhCccccc--CccHHHh-ChhhhHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 999999999998887 7888888 775433 34699999999999843
No 39
>1u8v_A Gamma-aminobutyrate metabolism dehydratase/isomerase; ALFA-helixes, beta-strands, lyase; HET: FAD; 1.60A {Clostridium aminobutyricum} SCOP: a.29.3.1 e.6.1.1
Probab=99.59 E-value=4.5e-15 Score=148.64 Aligned_cols=161 Identities=11% Similarity=-0.042 Sum_probs=119.0
Q ss_pred cCceEEeccCcccCcccccCcccccCCCceeecCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCC
Q 017243 11 MDNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGSK 90 (375)
Q Consensus 11 ~dng~i~Fd~vRIP~~~lL~~~~~v~~~G~~~~~~~~~~~~~~~l~~~R~~~~~~~~~~~~~al~ia~rYa~~R~qfg~~ 90 (375)
.++++|.|||||||.+|+|+- +. .|. + +. .....+...|+.+++.+++.+..++.++.+... .|
T Consensus 255 ~~~~~v~FddV~VP~e~vl~~-g~---~~~----g-~~-~~~~~~~~~r~~~~a~~~~~~~~~lG~a~~~~~---~~--- 318 (490)
T 1u8v_A 255 GQEALVVFDNVFIPNDRIFLC-QE---YDF----A-GM-MVERFAGYHRQSYGGCKVGVGDVVIGAAALAAD---YN--- 318 (490)
T ss_dssp CCCEEEEEEEEEEEGGGEEEE-SC---GGG----H-HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HH---
T ss_pred CceEEEEECceEeCHHHccCC-CC---hhH----H-HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hc---
Confidence 678999999999999999831 11 121 1 33 445566678887777666666666666655332 12
Q ss_pred CCCCCccccccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCChhhHHHHhhhhhHHHHHHHHHHHHHHH
Q 017243 91 NGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECR 170 (375)
Q Consensus 91 ~~~~e~~i~~~q~~q~~L~~~la~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~K~~~t~~~~~~~~~~r 170 (375)
+|.++|.+|++|++|.+.+++++.+..++.+.. +..+.....+....++++|.++++.+.++++.|+
T Consensus 319 ------gi~~~q~vq~~laem~~~leaar~l~~~aa~~~-------d~~~~g~~~~~~~~~s~aK~~a~e~a~~v~~~a~ 385 (490)
T 1u8v_A 319 ------GAQKASHVKDKLIEMTHLNETLYCCGIACSAEG-------YPTAAGNYQIDLLLANVCKQNITRFPYEIVRLAE 385 (490)
T ss_dssp ------TCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTC-------EECTTSCEECCHHHHHHHHHHHTTHHHHHHHHHH
T ss_pred ------CchhcHHHHHHHHHHHHHHHHHHHHHHHHHHcc-------cccccCCcCccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478999999999999999999998876665432 2211111112345689999999999999999999
Q ss_pred HHcccccccccCCcccccccc-ccccccccccc
Q 017243 171 KLCGGHGYLCSSGLPELFAVY-VPACTYEGDNI 202 (375)
Q Consensus 171 ~~~GG~G~~~~~~l~~~~~d~-~~~~t~EGdn~ 202 (375)
|++||.|++ .|++++++|. +++.|+|+...
T Consensus 386 qi~Gg~g~~--~p~er~~rd~~~~~~~~~~~~~ 416 (490)
T 1u8v_A 386 DIAGGLMVT--MPSEADFKSETVVGRDGETIGD 416 (490)
T ss_dssp HHHCTHHHH--CCCHHHHTCCCBCSTTSCBHHH
T ss_pred HHhCcchhc--ChHHHHHhCchhccccchhHHH
Confidence 999999998 8999999999 99999997543
No 40
>3hwc_A Chlorophenol-4-monooxygenase component 2; beta barrel, helix bundle, oxidoreductase; 2.50A {Burkholderia cepacia}
Probab=99.35 E-value=6.8e-12 Score=125.67 Aligned_cols=139 Identities=12% Similarity=-0.034 Sum_probs=93.8
Q ss_pred cCceEEeccCcccCccccc--CcccccCCCceeecCCCchhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhcccccc
Q 017243 11 MDNGVLRFEHVRIPRNQML--MRVSQVTREGKYVQSNVPRQLLYGTMVYV-RQTIVADASCALSRAVCIATRYSAVRRQF 87 (375)
Q Consensus 11 ~dng~i~Fd~vRIP~~~lL--~~~~~v~~~G~~~~~~~~~~~~~~~l~~~-R~~~~~~~~~~~~~al~ia~rYa~~R~qf 87 (375)
.+++.|.|||||||.+|+| |..+ .| +. .++..+... |..+ ...++.+..++.++.+++. +|
T Consensus 251 ~~~a~v~FddV~VP~e~vl~~Ge~g----~g-------~~-~~~~~~~~~~r~~~-~~~~~~a~~~lG~A~~~~e---~~ 314 (515)
T 3hwc_A 251 ELDSTTVFDNVFIPWEQVFHIGNPE----HA-------KL-YPQRIFDWVHYHIL-IRQVLRAELIVGLAILITE---HI 314 (515)
T ss_dssp CCEEEEEEEEEEEEGGGEEEESCTT----GG-------GT-HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH---HH
T ss_pred CceEEEEECceEECHHHccCCCCcc----HH-------HH-HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH---Hc
Confidence 3488999999999999999 4321 12 33 333333333 2222 2334444555555555442 23
Q ss_pred CCCCCCCCccccccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCChhhHHHHhhhhhHHHHHHHHHHHH
Q 017243 88 GSKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIE 167 (375)
Q Consensus 88 g~~~~~~e~~i~~~q~~q~~L~~~la~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~K~~~t~~~~~~~~ 167 (375)
+|.+||.+|++|++|.+..++++.+..++.+.. +.++.....+....+|++|.++++.+.++++
T Consensus 315 ---------gI~~fQ~Vq~kLAem~~~lEaaR~l~~~Aa~~~-------d~~~~G~~~p~~~~as~AK~~ase~~~rv~~ 378 (515)
T 3hwc_A 315 ---------GTSKLPTVSARVAKLVAFHLAMQAHLIASEETG-------FHTKGGRYKPNPLIYDFGRAHFLQNQMSVMY 378 (515)
T ss_dssp ---------TCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHTC-------EECTTCCEECCHHHHHHHHHHHHHHHHHHHH
T ss_pred ---------CCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhh-------ccccCCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 488999999999999999999998876654322 2211111112345689999999999999999
Q ss_pred HHHHHccccccccc
Q 017243 168 ECRKLCGGHGYLCS 181 (375)
Q Consensus 168 ~~r~~~GG~G~~~~ 181 (375)
.|+|++||.|++..
T Consensus 379 ~a~qi~GG~~i~~P 392 (515)
T 3hwc_A 379 ELLDLAGRSSLMIP 392 (515)
T ss_dssp HHHHHHGGGGTSCC
T ss_pred HHHHHcCCCeeeCC
Confidence 99999999999854
No 41
>4g5e_A 2,4,6-trichlorophenol 4-monooxygenase; oxidoreductase; 2.50A {Cupriavidus necator JMP134}
Probab=99.27 E-value=3.9e-11 Score=120.36 Aligned_cols=139 Identities=12% Similarity=0.008 Sum_probs=99.7
Q ss_pred ceEEeccCcccCcccccCcccccCCCceeecCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCC
Q 017243 13 NGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGSKNG 92 (375)
Q Consensus 13 ng~i~Fd~vRIP~~~lL~~~~~v~~~G~~~~~~~~~~~~~~~l~~~R~~~~~~~~~~~~~al~ia~rYa~~R~qfg~~~~ 92 (375)
.+.|.||||+||.||+|.- |. .|. + .. .....+...|...++..++.+..++..+.+++. ++|
T Consensus 254 da~vvFDdV~VP~e~Vf~~-Ge---~~~----~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~a~~~ae---~~G---- 316 (517)
T 4g5e_A 254 DGMTVFDNVFIPWSHVFHL-GN---PEH----A-KL-YPQRVFDWLHYHALIRQSVRAELMAGLAILITE---HIG---- 316 (517)
T ss_dssp EEEEEEEEEEEEGGGEEEE-SC---TTH----H-HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHT----
T ss_pred ceEEEecceeccHHHcccc-CC---hhH----H-HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhC----
Confidence 4889999999999998831 11 110 0 22 445567778877777777778878888888874 333
Q ss_pred CCCccccccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCChhhHHHHhhhhhHHHHHHHHHHHHHHHHH
Q 017243 93 GPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKL 172 (375)
Q Consensus 93 ~~e~~i~~~q~~q~~L~~~la~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~K~~~t~~~~~~~~~~r~~ 172 (375)
|.+||.+|++|++|++..++++.+...... .....+.....+-...++++|.++++...+++++++|+
T Consensus 317 -----i~~fq~Vq~kLaEm~~~~E~~ral~~aaa~-------~a~~~~~G~~~P~~~~a~~aK~~a~~~~~rv~~eaiqi 384 (517)
T 4g5e_A 317 -----TNKIPAVQTRVAKLIGFHQAMLAHIVASEE-------LGFHTPGGAYKPNILIYDFGRALYLENFSQMIYELVDL 384 (517)
T ss_dssp -----CTTSHHHHHHHHHHHHHHHHHHHHHHHHHH-------TCEECTTCCEECCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -----CcccHHHHHHHHHHHHHHHHHHHHHHHHHH-------hcccCCCCCcCcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 789999999999999999988776543311 11111111112224567899999999999999999999
Q ss_pred cccccccc
Q 017243 173 CGGHGYLC 180 (375)
Q Consensus 173 ~GG~G~~~ 180 (375)
+||.|++.
T Consensus 385 ~GG~g~~~ 392 (517)
T 4g5e_A 385 SGRSALIF 392 (517)
T ss_dssp HGGGTTCC
T ss_pred hCCccccC
Confidence 99999984
No 42
>3owa_A Acyl-COA dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-structure, beta-barrel; HET: MSE FAD 1PE; 1.97A {Bacillus anthracis}
Probab=76.48 E-value=14 Score=37.13 Aligned_cols=67 Identities=4% Similarity=-0.093 Sum_probs=52.3
Q ss_pred cccccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCChhhHHHHhhhhhHHHHHHHHHHHHHHHHHc
Q 017243 97 QVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLC 173 (375)
Q Consensus 97 ~i~~~q~~q~~L~~~la~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~K~~~t~~~~~~~~~~r~~~ 173 (375)
.|.+.|.+-.+|+++.+.+|++..+..+..+.+.. .|. +.......++++||.+....+-..+.++.
T Consensus 485 ~~~~~q~~l~~~ad~~~~~y~~~~~~~r~~~~~~~------~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 551 (597)
T 3owa_A 485 ALDKEQEILVNIADIVSNLYAMESAVLRTEKAIKT------TGL----EKNKQKVLYTEVFCQEAFNEIEAHAKETL 551 (597)
T ss_dssp GGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HCS----GGGHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh------cCc----cchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 79999999999999999999999887776655532 121 11223356899999999999999998876
No 43
>2uxw_A VERY-long-chain specific acyl-COA dehydrogenase; fatty acid metabolism, transit peptide, disease mutation, LI metabolism, coenzyme A dehydrogenase; HET: FAD TH3; 1.45A {Homo sapiens} PDB: 3b96_A*
Probab=44.76 E-value=2.1e+02 Score=28.60 Aligned_cols=68 Identities=15% Similarity=-0.018 Sum_probs=47.1
Q ss_pred cccccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCChhhHHHHhhhhhHHHHHHHHHHHHHHHHHccc
Q 017243 97 QVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGG 175 (375)
Q Consensus 97 ~i~~~q~~q~~L~~~la~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~K~~~t~~~~~~~~~~r~~~GG 175 (375)
++.+.|.+..||+++++.+|++..+..+..+.+. .|.. .......+++.||.+...++-..+.+++.+
T Consensus 509 ~~~~~~~~~~rl~d~~~~~y~~~~~l~r~~~~~~-------~g~~----~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 576 (607)
T 2uxw_A 509 GIVNEQFLLQRLADGAIDLYAMVVVLSRASRSLS-------EGHP----TAQHEKMLCDTWCIEAAARIREGMAALQSD 576 (607)
T ss_dssp GGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HTCT----THHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------CCCc----chHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 7888899999999999999987776555433332 2221 111225678999988888888888775543
No 44
>3nrh_A Uncharacterized protein BF1032; predominantly alpha-helical protein, structural genomics, PS protein structure initiative; 1.80A {Bacteroides fragilis}
Probab=43.13 E-value=18 Score=30.49 Aligned_cols=77 Identities=19% Similarity=0.238 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHHHHhh---hhHHHhcCCCCHHHHHHHHHHHHH
Q 017243 289 LAADLVEAAVAHCQLIVVSKFIEKLQQDIPGKGVKPILEILCHIYALHLVHKH---LGDFVSTGCITAKQASLANEQLRS 365 (375)
Q Consensus 289 ~~~~~~~la~A~~~~~~l~~F~~~v~~~~~~~~~~~vL~~L~~LyaL~~I~~~---~~~fl~~g~ls~~q~~~l~~~i~~ 365 (375)
-..+.+.+|+-||. |++...+.....-+..+++.|-.||....+... ........++|.++.+.++..+..
T Consensus 12 ~~~eFvtvA~eyC~------lvE~~~~~~~~~fi~~~~klLp~Ly~k~s~Lp~~e~~~~~~~e~~Vte~d~~~lr~~la~ 85 (182)
T 3nrh_A 12 NVIEFVTVAAEFCA------FLERAESMKRSTFVDTTLKILPLLYLKASMLPKCEMIGDESPETYVTEEIYEVLRINLAS 85 (182)
T ss_dssp HHHHHHHHHHHHHH------HHHTGGGSCHHHHHHHHHHHHHHHHHHHHTCCCCCCCCSSCCCCCCCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHH------HHhccccCCHHHHHHHHHHHHHHHHHHHhcCcccccccccccccccCHHHHHHHHHHHHH
Confidence 34678899999994 556654322345567788889999987765542 234456788999999999999999
Q ss_pred HHHhhc
Q 017243 366 LYSQVF 371 (375)
Q Consensus 366 l~~~lr 371 (375)
++...-
T Consensus 86 lLg~~D 91 (182)
T 3nrh_A 86 ILAEKD 91 (182)
T ss_dssp HHGGGS
T ss_pred HcCCCC
Confidence 987653
No 45
>1nvp_D Transcription initiation factor IIA gamma chain; transcription regulation, DNA, complex, transcription/DNA complex; 2.10A {Homo sapiens} SCOP: a.32.1.1 b.56.1.1
Probab=33.04 E-value=65 Score=24.54 Aligned_cols=33 Identities=15% Similarity=0.155 Sum_probs=27.6
Q ss_pred HHHhhhhHHHhcCCCCHHHHHHHHHHHHHHHHh
Q 017243 337 LVHKHLGDFVSTGCITAKQASLANEQLRSLYSQ 369 (375)
Q Consensus 337 ~I~~~~~~fl~~g~ls~~q~~~l~~~i~~l~~~ 369 (375)
.+.+-+.+++..|.|||+.+..|-..+...+++
T Consensus 13 aL~dtLdEli~~~~Isp~la~kVL~~FDksi~~ 45 (108)
T 1nvp_D 13 SLQESLDELIQSQQITPQLALQVLLQFDKAINA 45 (108)
T ss_dssp HHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 366777889999999999999988888877665
No 46
>1nh2_D Transcription initiation factor IIA small chain; transcription/DNA; HET: 5IU; 1.90A {Saccharomyces cerevisiae} SCOP: a.32.1.1 b.56.1.1 PDB: 1ytf_D* 1rm1_B
Probab=30.08 E-value=77 Score=24.66 Aligned_cols=38 Identities=18% Similarity=0.173 Sum_probs=29.7
Q ss_pred HHHhhhhHHHhcCCCCHHHHHHHHHHHHHHHHh-hcccC
Q 017243 337 LVHKHLGDFVSTGCITAKQASLANEQLRSLYSQ-VFTCV 374 (375)
Q Consensus 337 ~I~~~~~~fl~~g~ls~~q~~~l~~~i~~l~~~-lrp~~ 374 (375)
.|.+-+.+++..|.|||+.+..|-..+...+.+ |+..+
T Consensus 17 aL~dtLdEli~~~~Isp~la~kVL~~FDksi~~aL~~~v 55 (121)
T 1nh2_D 17 SLVDALDTLISDGRIEASLAMRVLETFDKVVAETLKDNT 55 (121)
T ss_dssp HHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 366777889999999999999988888877665 44333
No 47
>1bax_A M-PMV MA, M-PMV matrix protein; core protein, polyprotein, myristylation; NMR {Mason-pfizer monkey virus} SCOP: a.61.1.3 PDB: 2f76_X 2f77_X
Probab=28.21 E-value=55 Score=24.26 Aligned_cols=37 Identities=16% Similarity=0.183 Sum_probs=31.1
Q ss_pred HHHHhhhhHHHhcCCCCHHHHHHHHHHHHHHHHhhcc
Q 017243 336 HLVHKHLGDFVSTGCITAKQASLANEQLRSLYSQVFT 372 (375)
Q Consensus 336 ~~I~~~~~~fl~~g~ls~~q~~~l~~~i~~l~~~lrp 372 (375)
..|++.-.||-+.|-|+.+..+.+-+.+.+..++--|
T Consensus 36 ~fi~~~cPWFp~eGtl~l~~W~kVG~~L~~~~~~~g~ 72 (94)
T 1bax_A 36 DFVKDTCPWFPQEGTIDIKRWRRVGDCFQDYYNTFGP 72 (94)
T ss_pred HHHHHhCCCcCcCCcccHHHHHHHHHHHHHHHHHcCC
Confidence 4578888899999999999999999999988765433
No 48
>2lpy_A Matrix protein P10; GAG, myristoylated, myristate, viral protein; HET: MYR; NMR {Mason-pfizer monkey virus}
Probab=24.62 E-value=49 Score=25.89 Aligned_cols=44 Identities=16% Similarity=0.195 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHhhhhHHHhcCCCCHHHHHHHHHHHHHHHHhhcc
Q 017243 327 EILCHIYALHLVHKHLGDFVSTGCITAKQASLANEQLRSLYSQVFT 372 (375)
Q Consensus 327 ~~L~~LyaL~~I~~~~~~fl~~g~ls~~q~~~l~~~i~~l~~~lrp 372 (375)
++|..+| ..|++...||-+.|-|+..+.+.|-+.+.+....-.|
T Consensus 28 k~L~~Ff--~~i~~~cPWFp~eGtLd~~~W~kVG~~L~~~~~~~~~ 71 (124)
T 2lpy_A 28 ADLLKFF--DFVKDTCPWFPQEGTIDIKRWRRVGDCFQDYYNTFGP 71 (124)
T ss_dssp HHHHHHH--HHHHHHCTTCTTTCCCCSHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHH--HHHHHhCCCcCCCCccCHHHHHHHHHHHHHHHHHhCC
Confidence 4555554 4689999999999999999999999999877765433
Done!