BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017244
(375 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q7VG78|GUAA_HELHP Probable GMP synthase [glutamine-hydrolyzing] OS=Helicobacter
hepaticus (strain ATCC 51449 / 3B1) GN=guaA PE=3 SV=1
Length = 1375
Score = 176 bits (447), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 85/203 (41%), Positives = 126/203 (62%), Gaps = 12/203 (5%)
Query: 171 DNND--REEKRCSFITPNSDP---IYVAYHDEEWGVPVHDDKLLFELLVLTAAQVGSDWT 225
D+N+ RE+ RC++ T + +Y YHD EWG P+H+DK LFE LVL Q G W
Sbjct: 777 DSNEGVREKVRCAWATDKDEAARKLYEDYHDTEWGEPLHEDKKLFEHLVLEGFQAGLSWI 836
Query: 226 SVLKKRQAFREAFSGFDAEVVAKFTEKKMTSLSANYAI--DLSQVRGIVDNSIRILEVKK 283
++LKKR+AFR AF FD +VA + E K+ L N I + +++ + N+ + V++
Sbjct: 837 TILKKREAFRVAFDDFDPHIVANYDEDKIKELMRNEGIIRNRAKIEAAIINAKAFMAVQR 896
Query: 284 QFGSFDKYLWGFVNHKPINTQYRSSQKIPVKTSKSEAISKDMVKKGFRFVGPTVIHSFMQ 343
+FGSFDKY+WGFV KPI + S +P T S+ I+KD+ K+GF+FVG T +++ MQ
Sbjct: 897 EFGSFDKYIWGFVGGKPIINAFESIADLPASTPLSDKIAKDLKKRGFKFVGTTTMYAMMQ 956
Query: 344 AAGLTNDHLITCTR-----HLQC 361
+ G+ NDHL +C + +QC
Sbjct: 957 SIGMVNDHLTSCFKCNSSLGMQC 979
>sp|P05100|3MG1_ECOLI DNA-3-methyladenine glycosylase 1 OS=Escherichia coli (strain K12)
GN=tag PE=1 SV=1
Length = 187
Score = 159 bits (403), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 75/181 (41%), Positives = 112/181 (61%), Gaps = 4/181 (2%)
Query: 178 KRCSFITPNSDPIYVAYHDEEWGVPVHDDKLLFELLVLTAAQVGSDWTSVLKKRQAFREA 237
+RC +++ DP+Y+AYHD EWGVP D K LFE++ L Q G W +VLKKR+ +R
Sbjct: 2 ERCGWVS--QDPLYIAYHDNEWGVPETDSKKLFEMICLEGQQAGLSWITVLKKRENYRAC 59
Query: 238 FSGFDAEVVAKFTEKKMTSLSANYAI--DLSQVRGIVDNSIRILEVKKQFGSFDKYLWGF 295
F FD VA E+ + L + I +++ I+ N+ L++++ F ++W F
Sbjct: 60 FHQFDPVKVAAMQEEDVERLVQDAGIIRHRGKIQAIIGNARAYLQMEQNGEPFVDFVWSF 119
Query: 296 VNHKPINTQYRSSQKIPVKTSKSEAISKDMVKKGFRFVGPTVIHSFMQAAGLTNDHLITC 355
VNH+P TQ + +IP TS S+A+SK + K+GF+FVG T+ +SFMQA GL NDH++ C
Sbjct: 120 VNHQPQVTQATTLSEIPTSTSASDALSKALKKRGFKFVGTTICYSFMQACGLVNDHVVGC 179
Query: 356 T 356
Sbjct: 180 C 180
>sp|P44321|3MGA_HAEIN DNA-3-methyladenine glycosylase OS=Haemophilus influenzae (strain
ATCC 51907 / DSM 11121 / KW20 / Rd) GN=tag PE=3 SV=1
Length = 185
Score = 142 bits (359), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 71/179 (39%), Positives = 106/179 (59%), Gaps = 4/179 (2%)
Query: 179 RCSFITPNSDPIYVAYHDEEWGVPVHDDKLLFELLVLTAAQVGSDWTSVLKKRQAFREAF 238
RC ++ S IY+ YHD+EWG P D + LFE + L Q G W +VLKKR+++REAF
Sbjct: 4 RCPWVGEQS--IYIDYHDKEWGKPEFDSQKLFEKICLEGQQAGLSWITVLKKRESYREAF 61
Query: 239 SGFDAEVVAKFTEKKMTSLSANYAI--DLSQVRGIVDNSIRILEVKKQFGSFDKYLWGFV 296
FD + +AK T + + N + +++ IV N+ L ++K +F ++W FV
Sbjct: 62 HQFDPKKIAKMTALDIDACMQNSGLIRHRAKLEAIVKNAKAYLAMEKCGENFSDFIWSFV 121
Query: 297 NHKPINTQYRSSQKIPVKTSKSEAISKDMVKKGFRFVGPTVIHSFMQAAGLTNDHLITC 355
NHKPI + +P KT S+A+SK + K+GF F+G T ++FMQ+ GL +DHL C
Sbjct: 122 NHKPIVNDVPDLRSVPTKTEVSKALSKALKKRGFVFIGETTCYAFMQSMGLVDDHLNDC 180
>sp|C0ZIH0|RPOB_BREBN DNA-directed RNA polymerase subunit beta OS=Brevibacillus brevis
(strain 47 / JCM 6285 / NBRC 100599) GN=rpoB PE=3 SV=1
Length = 1179
Score = 35.4 bits (80), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 43/96 (44%), Gaps = 5/96 (5%)
Query: 188 DPIYVAYHDEEWGVPVHDDKLLFELLVLTAAQVGSDWTSVLKKRQAFREAFSGFDAEV-V 246
D +Y + H EE+ D KL E + VG D L +R R D ++ V
Sbjct: 783 DDVYTSIHIEEYESEARDTKLGPEEITRDIPNVGEDALKNLDERGIIRVGAEIQDGDILV 842
Query: 247 AKFTEKKMTSLSAN----YAIDLSQVRGIVDNSIRI 278
K T K +T L+A +AI + R + D S+R+
Sbjct: 843 GKVTPKGVTELTAEERLLHAIFGEKAREVRDTSLRV 878
>sp|Q81VT8|RPOB_BACAN DNA-directed RNA polymerase subunit beta OS=Bacillus anthracis
GN=rpoB PE=3 SV=1
Length = 1177
Score = 35.0 bits (79), Expect = 0.94, Method: Composition-based stats.
Identities = 29/96 (30%), Positives = 43/96 (44%), Gaps = 5/96 (5%)
Query: 188 DPIYVAYHDEEWGVPVHDDKLLFELLVLTAAQVGSDWTSVLKKRQAFREAFSGFDAE-VV 246
D +Y + H EE+ D KL E + VG D L +R R D + +V
Sbjct: 783 DDVYTSIHIEEYESEARDTKLGPEEITRDIPNVGEDALRNLDERGIIRVGAEVKDGDLLV 842
Query: 247 AKFTEKKMTSLSAN----YAIDLSQVRGIVDNSIRI 278
K T K +T L+A +AI + R + D S+R+
Sbjct: 843 GKVTPKGVTELTAEERLLHAIFGEKAREVRDTSLRV 878
>sp|C3LJ74|RPOB_BACAC DNA-directed RNA polymerase subunit beta OS=Bacillus anthracis
(strain CDC 684 / NRRL 3495) GN=rpoB PE=3 SV=1
Length = 1177
Score = 35.0 bits (79), Expect = 0.94, Method: Composition-based stats.
Identities = 29/96 (30%), Positives = 43/96 (44%), Gaps = 5/96 (5%)
Query: 188 DPIYVAYHDEEWGVPVHDDKLLFELLVLTAAQVGSDWTSVLKKRQAFREAFSGFDAE-VV 246
D +Y + H EE+ D KL E + VG D L +R R D + +V
Sbjct: 783 DDVYTSIHIEEYESEARDTKLGPEEITRDIPNVGEDALRNLDERGIIRVGAEVKDGDLLV 842
Query: 247 AKFTEKKMTSLSAN----YAIDLSQVRGIVDNSIRI 278
K T K +T L+A +AI + R + D S+R+
Sbjct: 843 GKVTPKGVTELTAEERLLHAIFGEKAREVRDTSLRV 878
>sp|C3P9P7|RPOB_BACAA DNA-directed RNA polymerase subunit beta OS=Bacillus anthracis
(strain A0248) GN=rpoB PE=3 SV=1
Length = 1177
Score = 35.0 bits (79), Expect = 0.94, Method: Composition-based stats.
Identities = 29/96 (30%), Positives = 43/96 (44%), Gaps = 5/96 (5%)
Query: 188 DPIYVAYHDEEWGVPVHDDKLLFELLVLTAAQVGSDWTSVLKKRQAFREAFSGFDAE-VV 246
D +Y + H EE+ D KL E + VG D L +R R D + +V
Sbjct: 783 DDVYTSIHIEEYESEARDTKLGPEEITRDIPNVGEDALRNLDERGIIRVGAEVKDGDLLV 842
Query: 247 AKFTEKKMTSLSAN----YAIDLSQVRGIVDNSIRI 278
K T K +T L+A +AI + R + D S+R+
Sbjct: 843 GKVTPKGVTELTAEERLLHAIFGEKAREVRDTSLRV 878
>sp|A9VP69|RPOB_BACWK DNA-directed RNA polymerase subunit beta OS=Bacillus
weihenstephanensis (strain KBAB4) GN=rpoB PE=3 SV=1
Length = 1177
Score = 35.0 bits (79), Expect = 0.96, Method: Composition-based stats.
Identities = 29/96 (30%), Positives = 43/96 (44%), Gaps = 5/96 (5%)
Query: 188 DPIYVAYHDEEWGVPVHDDKLLFELLVLTAAQVGSDWTSVLKKRQAFREAFSGFDAE-VV 246
D +Y + H EE+ D KL E + VG D L +R R D + +V
Sbjct: 783 DDVYTSIHIEEYESEARDTKLGPEEITRDIPNVGEDALRNLDERGIIRVGAEVKDGDLLV 842
Query: 247 AKFTEKKMTSLSAN----YAIDLSQVRGIVDNSIRI 278
K T K +T L+A +AI + R + D S+R+
Sbjct: 843 GKVTPKGVTELTAEERLLHAIFGEKAREVRDTSLRV 878
>sp|Q6HPR6|RPOB_BACHK DNA-directed RNA polymerase subunit beta OS=Bacillus thuringiensis
subsp. konkukian (strain 97-27) GN=rpoB PE=3 SV=1
Length = 1177
Score = 35.0 bits (79), Expect = 0.97, Method: Composition-based stats.
Identities = 29/96 (30%), Positives = 43/96 (44%), Gaps = 5/96 (5%)
Query: 188 DPIYVAYHDEEWGVPVHDDKLLFELLVLTAAQVGSDWTSVLKKRQAFREAFSGFDAE-VV 246
D +Y + H EE+ D KL E + VG D L +R R D + +V
Sbjct: 783 DDVYTSIHIEEYESEARDTKLGPEEITRDIPNVGEDALRNLDERGIIRVGAEVKDGDLLV 842
Query: 247 AKFTEKKMTSLSAN----YAIDLSQVRGIVDNSIRI 278
K T K +T L+A +AI + R + D S+R+
Sbjct: 843 GKVTPKGVTELTAEERLLHAIFGEKAREVRDTSLRV 878
>sp|Q63H98|RPOB_BACCZ DNA-directed RNA polymerase subunit beta OS=Bacillus cereus (strain
ZK / E33L) GN=rpoB PE=3 SV=1
Length = 1177
Score = 35.0 bits (79), Expect = 0.97, Method: Composition-based stats.
Identities = 29/96 (30%), Positives = 43/96 (44%), Gaps = 5/96 (5%)
Query: 188 DPIYVAYHDEEWGVPVHDDKLLFELLVLTAAQVGSDWTSVLKKRQAFREAFSGFDAE-VV 246
D +Y + H EE+ D KL E + VG D L +R R D + +V
Sbjct: 783 DDVYTSIHIEEYESEARDTKLGPEEITRDIPNVGEDALRNLDERGIIRVGAEVKDGDLLV 842
Query: 247 AKFTEKKMTSLSAN----YAIDLSQVRGIVDNSIRI 278
K T K +T L+A +AI + R + D S+R+
Sbjct: 843 GKVTPKGVTELTAEERLLHAIFGEKAREVRDTSLRV 878
>sp|B9IZI6|RPOB_BACCQ DNA-directed RNA polymerase subunit beta OS=Bacillus cereus (strain
Q1) GN=rpoB PE=3 SV=1
Length = 1177
Score = 35.0 bits (79), Expect = 0.97, Method: Composition-based stats.
Identities = 29/96 (30%), Positives = 43/96 (44%), Gaps = 5/96 (5%)
Query: 188 DPIYVAYHDEEWGVPVHDDKLLFELLVLTAAQVGSDWTSVLKKRQAFREAFSGFDAE-VV 246
D +Y + H EE+ D KL E + VG D L +R R D + +V
Sbjct: 783 DDVYTSIHIEEYESEARDTKLGPEEITRDIPNVGEDALRNLDERGIIRVGAEVKDGDLLV 842
Query: 247 AKFTEKKMTSLSAN----YAIDLSQVRGIVDNSIRI 278
K T K +T L+A +AI + R + D S+R+
Sbjct: 843 GKVTPKGVTELTAEERLLHAIFGEKAREVRDTSLRV 878
>sp|B7HQT6|RPOB_BACC7 DNA-directed RNA polymerase subunit beta OS=Bacillus cereus (strain
AH187) GN=rpoB PE=3 SV=1
Length = 1177
Score = 35.0 bits (79), Expect = 0.97, Method: Composition-based stats.
Identities = 29/96 (30%), Positives = 43/96 (44%), Gaps = 5/96 (5%)
Query: 188 DPIYVAYHDEEWGVPVHDDKLLFELLVLTAAQVGSDWTSVLKKRQAFREAFSGFDAE-VV 246
D +Y + H EE+ D KL E + VG D L +R R D + +V
Sbjct: 783 DDVYTSIHIEEYESEARDTKLGPEEITRDIPNVGEDALRNLDERGIIRVGAEVKDGDLLV 842
Query: 247 AKFTEKKMTSLSAN----YAIDLSQVRGIVDNSIRI 278
K T K +T L+A +AI + R + D S+R+
Sbjct: 843 GKVTPKGVTELTAEERLLHAIFGEKAREVRDTSLRV 878
>sp|C1ET31|RPOB_BACC3 DNA-directed RNA polymerase subunit beta OS=Bacillus cereus (strain
03BB102) GN=rpoB PE=3 SV=1
Length = 1177
Score = 35.0 bits (79), Expect = 0.97, Method: Composition-based stats.
Identities = 29/96 (30%), Positives = 43/96 (44%), Gaps = 5/96 (5%)
Query: 188 DPIYVAYHDEEWGVPVHDDKLLFELLVLTAAQVGSDWTSVLKKRQAFREAFSGFDAE-VV 246
D +Y + H EE+ D KL E + VG D L +R R D + +V
Sbjct: 783 DDVYTSIHIEEYESEARDTKLGPEEITRDIPNVGEDALRNLDERGIIRVGAEVKDGDLLV 842
Query: 247 AKFTEKKMTSLSAN----YAIDLSQVRGIVDNSIRI 278
K T K +T L+A +AI + R + D S+R+
Sbjct: 843 GKVTPKGVTELTAEERLLHAIFGEKAREVRDTSLRV 878
>sp|Q73FA4|RPOB_BACC1 DNA-directed RNA polymerase subunit beta OS=Bacillus cereus (strain
ATCC 10987) GN=rpoB PE=3 SV=1
Length = 1177
Score = 35.0 bits (79), Expect = 0.97, Method: Composition-based stats.
Identities = 29/96 (30%), Positives = 43/96 (44%), Gaps = 5/96 (5%)
Query: 188 DPIYVAYHDEEWGVPVHDDKLLFELLVLTAAQVGSDWTSVLKKRQAFREAFSGFDAE-VV 246
D +Y + H EE+ D KL E + VG D L +R R D + +V
Sbjct: 783 DDVYTSIHIEEYESEARDTKLGPEEITRDIPNVGEDALRNLDERGIIRVGAEVKDGDLLV 842
Query: 247 AKFTEKKMTSLSAN----YAIDLSQVRGIVDNSIRI 278
K T K +T L+A +AI + R + D S+R+
Sbjct: 843 GKVTPKGVTELTAEERLLHAIFGEKAREVRDTSLRV 878
>sp|A0R8H2|RPOB_BACAH DNA-directed RNA polymerase subunit beta OS=Bacillus thuringiensis
(strain Al Hakam) GN=rpoB PE=3 SV=2
Length = 1177
Score = 35.0 bits (79), Expect = 0.97, Method: Composition-based stats.
Identities = 29/96 (30%), Positives = 43/96 (44%), Gaps = 5/96 (5%)
Query: 188 DPIYVAYHDEEWGVPVHDDKLLFELLVLTAAQVGSDWTSVLKKRQAFREAFSGFDAE-VV 246
D +Y + H EE+ D KL E + VG D L +R R D + +V
Sbjct: 783 DDVYTSIHIEEYESEARDTKLGPEEITRDIPNVGEDALRNLDERGIIRVGAEVKDGDLLV 842
Query: 247 AKFTEKKMTSLSAN----YAIDLSQVRGIVDNSIRI 278
K T K +T L+A +AI + R + D S+R+
Sbjct: 843 GKVTPKGVTELTAEERLLHAIFGEKAREVRDTSLRV 878
>sp|Q81J48|RPOB_BACCR DNA-directed RNA polymerase subunit beta OS=Bacillus cereus (strain
ATCC 14579 / DSM 31) GN=rpoB PE=3 SV=1
Length = 1177
Score = 35.0 bits (79), Expect = 0.98, Method: Composition-based stats.
Identities = 29/96 (30%), Positives = 43/96 (44%), Gaps = 5/96 (5%)
Query: 188 DPIYVAYHDEEWGVPVHDDKLLFELLVLTAAQVGSDWTSVLKKRQAFREAFSGFDAE-VV 246
D +Y + H EE+ D KL E + VG D L +R R D + +V
Sbjct: 783 DDVYTSIHIEEYESEARDTKLGPEEITRDIPNVGEDALRNLDERGIIRVGAEVKDGDLLV 842
Query: 247 AKFTEKKMTSLSAN----YAIDLSQVRGIVDNSIRI 278
K T K +T L+A +AI + R + D S+R+
Sbjct: 843 GKVTPKGVTELTAEERLLHAIFGEKAREVRDTSLRV 878
>sp|B7HJ40|RPOB_BACC4 DNA-directed RNA polymerase subunit beta OS=Bacillus cereus (strain
B4264) GN=rpoB PE=3 SV=1
Length = 1177
Score = 35.0 bits (79), Expect = 0.98, Method: Composition-based stats.
Identities = 29/96 (30%), Positives = 43/96 (44%), Gaps = 5/96 (5%)
Query: 188 DPIYVAYHDEEWGVPVHDDKLLFELLVLTAAQVGSDWTSVLKKRQAFREAFSGFDAE-VV 246
D +Y + H EE+ D KL E + VG D L +R R D + +V
Sbjct: 783 DDVYTSIHIEEYESEARDTKLGPEEITRDIPNVGEDALRNLDERGIIRVGAEVKDGDLLV 842
Query: 247 AKFTEKKMTSLSAN----YAIDLSQVRGIVDNSIRI 278
K T K +T L+A +AI + R + D S+R+
Sbjct: 843 GKVTPKGVTELTAEERLLHAIFGEKAREVRDTSLRV 878
>sp|B7IT11|RPOB_BACC2 DNA-directed RNA polymerase subunit beta OS=Bacillus cereus (strain
G9842) GN=rpoB PE=3 SV=1
Length = 1177
Score = 35.0 bits (79), Expect = 0.98, Method: Composition-based stats.
Identities = 29/96 (30%), Positives = 43/96 (44%), Gaps = 5/96 (5%)
Query: 188 DPIYVAYHDEEWGVPVHDDKLLFELLVLTAAQVGSDWTSVLKKRQAFREAFSGFDAE-VV 246
D +Y + H EE+ D KL E + VG D L +R R D + +V
Sbjct: 783 DDVYTSIHIEEYESEARDTKLGPEEITRDIPNVGEDALRNLDERGIIRVGAEVKDGDLLV 842
Query: 247 AKFTEKKMTSLSAN----YAIDLSQVRGIVDNSIRI 278
K T K +T L+A +AI + R + D S+R+
Sbjct: 843 GKVTPKGVTELTAEERLLHAIFGEKAREVRDTSLRV 878
>sp|Q65PB5|RPOB_BACLD DNA-directed RNA polymerase subunit beta OS=Bacillus licheniformis
(strain DSM 13 / ATCC 14580) GN=rpoB PE=3 SV=1
Length = 1193
Score = 35.0 bits (79), Expect = 1.1, Method: Composition-based stats.
Identities = 29/96 (30%), Positives = 43/96 (44%), Gaps = 5/96 (5%)
Query: 188 DPIYVAYHDEEWGVPVHDDKLLFELLVLTAAQVGSDWTSVLKKRQAFREAFSGFDAE-VV 246
D +Y + H EE+ D KL E + VG D L +R R D + +V
Sbjct: 784 DDVYTSIHIEEYESEARDTKLGPEEITRDIPNVGEDALRNLDERGIIRVGAEVKDGDLLV 843
Query: 247 AKFTEKKMTSLSAN----YAIDLSQVRGIVDNSIRI 278
K T K +T L+A +AI + R + D S+R+
Sbjct: 844 GKVTPKGVTELTAEERLLHAIFGEKAREVRDTSLRV 879
>sp|Q5L405|RPOB_GEOKA DNA-directed RNA polymerase subunit beta OS=Geobacillus
kaustophilus (strain HTA426) GN=rpoB PE=3 SV=1
Length = 1190
Score = 34.7 bits (78), Expect = 1.1, Method: Composition-based stats.
Identities = 29/96 (30%), Positives = 43/96 (44%), Gaps = 5/96 (5%)
Query: 188 DPIYVAYHDEEWGVPVHDDKLLFELLVLTAAQVGSDWTSVLKKRQAFREAFSGFDAE-VV 246
+ +Y + H EE+ D KL E + VG D L +R R D + +V
Sbjct: 784 EDVYTSIHIEEYEAESRDTKLGPEEITRDIPNVGEDALKNLDERGIVRIGAEVKDGDLLV 843
Query: 247 AKFTEKKMTSLSAN----YAIDLSQVRGIVDNSIRI 278
K T K MT L+A +AI + R + D S+R+
Sbjct: 844 GKVTPKGMTELTAEERLLHAIFGEKAREVRDTSLRV 879
>sp|A8F976|RPOB_BACP2 DNA-directed RNA polymerase subunit beta OS=Bacillus pumilus
(strain SAFR-032) GN=rpoB PE=3 SV=1
Length = 1196
Score = 34.7 bits (78), Expect = 1.2, Method: Composition-based stats.
Identities = 29/96 (30%), Positives = 43/96 (44%), Gaps = 5/96 (5%)
Query: 188 DPIYVAYHDEEWGVPVHDDKLLFELLVLTAAQVGSDWTSVLKKRQAFREAFSGFDAE-VV 246
D +Y + H EE+ D KL E + VG D L +R R D + +V
Sbjct: 787 DDVYTSIHIEEYESEARDTKLGPEEITRDIPNVGEDALRNLDERGIIRIGAEVKDGDLLV 846
Query: 247 AKFTEKKMTSLSAN----YAIDLSQVRGIVDNSIRI 278
K T K +T L+A +AI + R + D S+R+
Sbjct: 847 GKVTPKGVTELTAEERLLHAIFGEKAREVRDTSLRV 882
>sp|Q9Z9M2|RPOB_BACHD DNA-directed RNA polymerase subunit beta OS=Bacillus halodurans
(strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153
/ C-125) GN=rpoB PE=3 SV=1
Length = 1180
Score = 34.7 bits (78), Expect = 1.2, Method: Composition-based stats.
Identities = 29/95 (30%), Positives = 42/95 (44%), Gaps = 5/95 (5%)
Query: 188 DPIYVAYHDEEWGVPVHDDKLLFELLVLTAAQVGSDWTSVLKKRQAFREAFSGFDAEV-V 246
D +Y + H EE+ D KL E + VG D L +R R D ++ V
Sbjct: 785 DDVYTSIHIEEYESEARDTKLGPEEITRDIPNVGEDALRNLDERGIIRVGAEVKDGDILV 844
Query: 247 AKFTEKKMTSLSAN----YAIDLSQVRGIVDNSIR 277
K T K +T L+A +AI + R + D S+R
Sbjct: 845 GKVTPKGVTELTAEERLLHAIFGEKAREVRDTSLR 879
>sp|B1HMZ6|RPOB_LYSSC DNA-directed RNA polymerase subunit beta OS=Lysinibacillus
sphaericus (strain C3-41) GN=rpoB PE=3 SV=1
Length = 1191
Score = 34.3 bits (77), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 43/96 (44%), Gaps = 5/96 (5%)
Query: 188 DPIYVAYHDEEWGVPVHDDKLLFELLVLTAAQVGSDWTSVLKKRQAFREAFSGFDAEV-V 246
D +Y + H EE+ D KL E + VG D L +R R D ++ V
Sbjct: 789 DDVYTSVHIEEYESESRDTKLGPEEITRDIPNVGEDALRNLDERGIIRIGAEVRDGDILV 848
Query: 247 AKFTEKKMTSLSAN----YAIDLSQVRGIVDNSIRI 278
K T K +T L+A +AI + R + D S+R+
Sbjct: 849 GKVTPKGVTELTAEERLLHAIFGEKAREVRDTSLRV 884
>sp|Q8ETY8|RPOB_OCEIH DNA-directed RNA polymerase subunit beta OS=Oceanobacillus
iheyensis (strain DSM 14371 / JCM 11309 / KCTC 3954 /
HTE831) GN=rpoB PE=3 SV=1
Length = 1179
Score = 34.3 bits (77), Expect = 1.5, Method: Composition-based stats.
Identities = 29/96 (30%), Positives = 42/96 (43%), Gaps = 5/96 (5%)
Query: 188 DPIYVAYHDEEWGVPVHDDKLLFELLVLTAAQVGSDWTSVLKKRQAFREAFSGFDAEV-V 246
D +Y + H EE+ D KL E + VG D L + R D ++ V
Sbjct: 787 DDVYTSIHIEEFESEARDTKLGPEEITRDIPNVGEDALKNLDEHGIIRVGAEVTDGDILV 846
Query: 247 AKFTEKKMTSLSAN----YAIDLSQVRGIVDNSIRI 278
K T K +T LSA +AI + R + D S+R+
Sbjct: 847 GKVTPKGVTELSAEERLLHAIFGEKAREVRDTSLRV 882
>sp|A4IJI1|RPOB_GEOTN DNA-directed RNA polymerase subunit beta OS=Geobacillus
thermodenitrificans (strain NG80-2) GN=rpoB PE=3 SV=1
Length = 1190
Score = 34.3 bits (77), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 42/94 (44%), Gaps = 5/94 (5%)
Query: 190 IYVAYHDEEWGVPVHDDKLLFELLVLTAAQVGSDWTSVLKKRQAFREAFSGFDAE-VVAK 248
+Y + H EE+ D KL E + VG D L +R R D + +V K
Sbjct: 786 VYTSIHIEEYEAESRDTKLGPEEITRDIPNVGEDALKNLDERGIVRIGAEVKDGDLLVGK 845
Query: 249 FTEKKMTSLSAN----YAIDLSQVRGIVDNSIRI 278
T K MT L+A +AI + R + D S+R+
Sbjct: 846 VTPKGMTELTAEERLLHAIFGEKAREVRDTSLRV 879
>sp|Q5WLS0|RPOB_BACSK DNA-directed RNA polymerase subunit beta OS=Bacillus clausii
(strain KSM-K16) GN=rpoB PE=3 SV=1
Length = 1180
Score = 34.3 bits (77), Expect = 1.7, Method: Composition-based stats.
Identities = 29/95 (30%), Positives = 42/95 (44%), Gaps = 5/95 (5%)
Query: 188 DPIYVAYHDEEWGVPVHDDKLLFELLVLTAAQVGSDWTSVLKKRQAFREAFSGFDAEV-V 246
D +Y + H EE+ D KL E + VG D L +R R D ++ V
Sbjct: 785 DDVYTSIHIEEYESDARDTKLGPEEITRDIPNVGEDALRNLDERGIIRIGAEVKDGDILV 844
Query: 247 AKFTEKKMTSLSAN----YAIDLSQVRGIVDNSIR 277
K T K +T L+A +AI + R + D S+R
Sbjct: 845 GKVTPKGVTELTAEERLLHAIFGEKAREVRDTSLR 879
>sp|P37870|RPOB_BACSU DNA-directed RNA polymerase subunit beta OS=Bacillus subtilis
(strain 168) GN=rpoB PE=1 SV=2
Length = 1193
Score = 34.3 bits (77), Expect = 1.8, Method: Composition-based stats.
Identities = 29/96 (30%), Positives = 42/96 (43%), Gaps = 5/96 (5%)
Query: 188 DPIYVAYHDEEWGVPVHDDKLLFELLVLTAAQVGSDWTSVLKKRQAFREAFSGFDAE-VV 246
D +Y + H EE+ D KL E + VG D L R R D + +V
Sbjct: 784 DDVYTSIHIEEYESEARDTKLGPEEITRDIPNVGEDALRNLDDRGIIRIGAEVKDGDLLV 843
Query: 247 AKFTEKKMTSLSAN----YAIDLSQVRGIVDNSIRI 278
K T K +T L+A +AI + R + D S+R+
Sbjct: 844 GKVTPKGVTELTAEERLLHAIFGEKAREVRDTSLRV 879
>sp|A7Z0M9|RPOB_BACA2 DNA-directed RNA polymerase subunit beta OS=Bacillus
amyloliquefaciens (strain FZB42) GN=rpoB PE=3 SV=1
Length = 1196
Score = 33.9 bits (76), Expect = 1.8, Method: Composition-based stats.
Identities = 29/96 (30%), Positives = 42/96 (43%), Gaps = 5/96 (5%)
Query: 188 DPIYVAYHDEEWGVPVHDDKLLFELLVLTAAQVGSDWTSVLKKRQAFREAFSGFDAE-VV 246
D +Y + H EE+ D KL E + VG D L R R D + +V
Sbjct: 787 DDVYTSIHIEEYESEARDTKLGPEEITRDIPNVGEDALRNLDDRGIIRIGAEVNDGDLLV 846
Query: 247 AKFTEKKMTSLSAN----YAIDLSQVRGIVDNSIRI 278
K T K +T L+A +AI + R + D S+R+
Sbjct: 847 GKVTPKGVTELTAEERLLHAIFGEKAREVRDTSLRV 882
>sp|C4KZQ4|RPOB_EXISA DNA-directed RNA polymerase subunit beta OS=Exiguobacterium sp.
(strain ATCC BAA-1283 / AT1b) GN=rpoB PE=3 SV=1
Length = 1182
Score = 33.9 bits (76), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 42/96 (43%), Gaps = 5/96 (5%)
Query: 188 DPIYVAYHDEEWGVPVHDDKLLFELLVLTAAQVGSDWTSVLKKRQAFREAFSGFDAEV-V 246
D +Y + H EE+ D KL E + VG D L R R D ++ V
Sbjct: 785 DDVYTSIHIEEYESESRDTKLGPEEITRDIPNVGDDALRNLDDRGIIRIGAEVKDGDILV 844
Query: 247 AKFTEKKMTSLSAN----YAIDLSQVRGIVDNSIRI 278
K T K +T L+A +AI + R + D S+R+
Sbjct: 845 GKVTPKGVTELTAEERLLHAIFGEKAREVRDTSLRV 880
>sp|B8DEY8|RPOB_LISMH DNA-directed RNA polymerase subunit beta OS=Listeria monocytogenes
serotype 4a (strain HCC23) GN=rpoB PE=3 SV=1
Length = 1184
Score = 33.5 bits (75), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 43/96 (44%), Gaps = 5/96 (5%)
Query: 188 DPIYVAYHDEEWGVPVHDDKLLFELLVLTAAQVGSDWTSVLKKRQAFREAFSGFDAE-VV 246
D +Y + H EE+ D KL E + VG D L +R R D + +V
Sbjct: 785 DDVYTSIHIEEFESEARDTKLGPEEMTRDIPNVGEDALRDLDERGIIRVGAEVKDNDLLV 844
Query: 247 AKFTEKKMTSLSAN----YAIDLSQVRGIVDNSIRI 278
K T K +T L+A +AI + R + D S+R+
Sbjct: 845 GKVTPKGVTELTAEERLLHAIFGEKAREVRDTSLRV 880
>sp|Q9RLT9|RPOB_LISMO DNA-directed RNA polymerase subunit beta OS=Listeria monocytogenes
serovar 1/2a (strain ATCC BAA-679 / EGD-e) GN=rpoB PE=3
SV=1
Length = 1184
Score = 33.5 bits (75), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 43/96 (44%), Gaps = 5/96 (5%)
Query: 188 DPIYVAYHDEEWGVPVHDDKLLFELLVLTAAQVGSDWTSVLKKRQAFREAFSGFDAE-VV 246
D +Y + H EE+ D KL E + VG D L +R R D + +V
Sbjct: 785 DDVYTSIHIEEFESEARDTKLGPEEMTRDIPNVGEDALRDLDERGIIRVGAEVKDNDLLV 844
Query: 247 AKFTEKKMTSLSAN----YAIDLSQVRGIVDNSIRI 278
K T K +T L+A +AI + R + D S+R+
Sbjct: 845 GKVTPKGVTELTAEERLLHAIFGEKAREVRDTSLRV 880
>sp|Q724F0|RPOB_LISMF DNA-directed RNA polymerase subunit beta OS=Listeria monocytogenes
serotype 4b (strain F2365) GN=rpoB PE=3 SV=1
Length = 1184
Score = 33.5 bits (75), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 43/96 (44%), Gaps = 5/96 (5%)
Query: 188 DPIYVAYHDEEWGVPVHDDKLLFELLVLTAAQVGSDWTSVLKKRQAFREAFSGFDAE-VV 246
D +Y + H EE+ D KL E + VG D L +R R D + +V
Sbjct: 785 DDVYTSIHIEEFESEARDTKLGPEEMTRDIPNVGEDALRDLDERGIIRVGAEVKDNDLLV 844
Query: 247 AKFTEKKMTSLSAN----YAIDLSQVRGIVDNSIRI 278
K T K +T L+A +AI + R + D S+R+
Sbjct: 845 GKVTPKGVTELTAEERLLHAIFGEKAREVRDTSLRV 880
>sp|C1KYJ3|RPOB_LISMC DNA-directed RNA polymerase subunit beta OS=Listeria monocytogenes
serotype 4b (strain CLIP80459) GN=rpoB PE=3 SV=1
Length = 1184
Score = 33.5 bits (75), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 43/96 (44%), Gaps = 5/96 (5%)
Query: 188 DPIYVAYHDEEWGVPVHDDKLLFELLVLTAAQVGSDWTSVLKKRQAFREAFSGFDAE-VV 246
D +Y + H EE+ D KL E + VG D L +R R D + +V
Sbjct: 785 DDVYTSIHIEEFESEARDTKLGPEEMTRDIPNVGEDALRDLDERGIIRVGAEVKDNDLLV 844
Query: 247 AKFTEKKMTSLSAN----YAIDLSQVRGIVDNSIRI 278
K T K +T L+A +AI + R + D S+R+
Sbjct: 845 GKVTPKGVTELTAEERLLHAIFGEKAREVRDTSLRV 880
>sp|Q92F22|RPOB_LISIN DNA-directed RNA polymerase subunit beta OS=Listeria innocua
serovar 6a (strain CLIP 11262) GN=rpoB PE=3 SV=1
Length = 1184
Score = 33.5 bits (75), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 43/96 (44%), Gaps = 5/96 (5%)
Query: 188 DPIYVAYHDEEWGVPVHDDKLLFELLVLTAAQVGSDWTSVLKKRQAFREAFSGFDAE-VV 246
D +Y + H EE+ D KL E + VG D L +R R D + +V
Sbjct: 785 DDVYTSIHIEEFESEARDTKLGPEEMTRDIPNVGEDALRDLDERGIIRVGAEVKDNDLLV 844
Query: 247 AKFTEKKMTSLSAN----YAIDLSQVRGIVDNSIRI 278
K T K +T L+A +AI + R + D S+R+
Sbjct: 845 GKVTPKGVTELTAEERLLHAIFGEKAREVRDTSLRV 880
>sp|Q03EA9|RPOB_PEDPA DNA-directed RNA polymerase subunit beta OS=Pediococcus pentosaceus
(strain ATCC 25745 / 183-1w) GN=rpoB PE=3 SV=1
Length = 1202
Score = 33.5 bits (75), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 42/96 (43%), Gaps = 5/96 (5%)
Query: 188 DPIYVAYHDEEWGVPVHDDKLLFELLVLTAAQVGSDWTSVLKKRQAFREAFSGFDAEV-V 246
D +Y + H EE+ D KL E + +G D L + R D ++ V
Sbjct: 781 DDVYTSIHIEEYESEARDTKLGPEEMTREIPNIGEDALRNLDQDGIVRVGAEVEDGDILV 840
Query: 247 AKFTEKKMTSLSAN----YAIDLSQVRGIVDNSIRI 278
K T K +T LSA +AI + R + D S+R+
Sbjct: 841 GKVTPKGVTELSAEERLLHAIFGEKAREVRDTSLRV 876
>sp|A0AF63|RPOB_LISW6 DNA-directed RNA polymerase subunit beta OS=Listeria welshimeri
serovar 6b (strain ATCC 35897 / DSM 20650 / SLCC5334)
GN=rpoB PE=3 SV=1
Length = 1184
Score = 33.1 bits (74), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 43/96 (44%), Gaps = 5/96 (5%)
Query: 188 DPIYVAYHDEEWGVPVHDDKLLFELLVLTAAQVGSDWTSVLKKRQAFREAFSGFDAE-VV 246
D +Y + H EE+ D KL E + VG D L +R R D + +V
Sbjct: 785 DDVYTSIHIEEFESEARDTKLGPEEMTRDIPNVGEDALRDLDERGIIRVGAEVKDNDLLV 844
Query: 247 AKFTEKKMTSLSAN----YAIDLSQVRGIVDNSIRI 278
K T K +T L+A +AI + R + D S+R+
Sbjct: 845 GKVTPKGVTELTAEERLLHAIFGEKAREVRDTSLRV 880
>sp|A9AA58|SYFB_METM6 Phenylalanine--tRNA ligase beta subunit OS=Methanococcus
maripaludis (strain C6 / ATCC BAA-1332) GN=pheT PE=3
SV=1
Length = 554
Score = 32.7 bits (73), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 52/188 (27%), Positives = 84/188 (44%), Gaps = 35/188 (18%)
Query: 43 KSPITTDNVNSKSFTKSLLSPPVSPKLKSPRPAAVKRGNDPNVLNTSAEKIMTPKKLASL 102
+ I + +VN K + P ++PK R +V+ N LN + P ++
Sbjct: 260 RGTIVSVDVNGKKY------PDLTPK---SRMISVESINKKLGLN------LNPGEIIQA 304
Query: 103 VKKPKNVGVAPCY-DSSLIVEAPGSIAAARREHVAIMQEQRKLRIAHYGRTKSAKFEGKV 161
VKK G+ Y D +LIV+ P A R + + + + ++ I +YG KFEGK+
Sbjct: 305 VKKS---GMDALYEDGNLIVKIP----AYRNDILHNVDLKEEIAI-NYGY---EKFEGKL 353
Query: 162 PGLDSFANGDNNDREEKRCSFITPNSDPIYVAYHDEEWGVPVHDDKLLFELLVLTAAQVG 221
P S A + D EK+CS + SD + E + + + LFE + L +
Sbjct: 354 P---SVATTGSKDSVEKKCSAM---SDLMIGLGFYEVMNLTLSNQDTLFEKMNLEVEE-- 405
Query: 222 SDWTSVLK 229
D+ VLK
Sbjct: 406 KDYIEVLK 413
>sp|Q8GCR3|RPOB4_ENTFC DNA-directed RNA polymerase subunit beta OS=Enterococcus faecium
GN=rpoB PE=3 SV=1
Length = 1208
Score = 32.7 bits (73), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 42/96 (43%), Gaps = 5/96 (5%)
Query: 188 DPIYVAYHDEEWGVPVHDDKLLFELLVLTAAQVGSDWTSVLKKRQAFREAFSGFDAE-VV 246
D +Y + H EE+ D KL E + VG D L + R D + +V
Sbjct: 783 DDVYTSIHIEEYESEARDTKLGPEEITREIPNVGEDALKDLDEMGIIRIGAEVKDGDLLV 842
Query: 247 AKFTEKKMTSLSAN----YAIDLSQVRGIVDNSIRI 278
K T K +T LSA +AI + R + D S+R+
Sbjct: 843 GKVTPKGVTELSAEERLLHAIFGEKAREVRDTSLRV 878
>sp|Q8GCR5|RPOB3_ENTFC DNA-directed RNA polymerase subunit beta OS=Enterococcus faecium
GN=rpoB PE=3 SV=1
Length = 1208
Score = 32.7 bits (73), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 42/96 (43%), Gaps = 5/96 (5%)
Query: 188 DPIYVAYHDEEWGVPVHDDKLLFELLVLTAAQVGSDWTSVLKKRQAFREAFSGFDAE-VV 246
D +Y + H EE+ D KL E + VG D L + R D + +V
Sbjct: 783 DDVYTSIHIEEYESEARDTKLGPEEITREIPNVGEDALKDLDEMGIIRIGAEVQDGDLLV 842
Query: 247 AKFTEKKMTSLSAN----YAIDLSQVRGIVDNSIRI 278
K T K +T LSA +AI + R + D S+R+
Sbjct: 843 GKVTPKGVTELSAEERLLHAIFGEKAREVRDTSLRV 878
>sp|Q8GCR4|RPOB2_ENTFC DNA-directed RNA polymerase subunit beta OS=Enterococcus faecium
GN=rpoB PE=3 SV=1
Length = 1208
Score = 32.7 bits (73), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 42/96 (43%), Gaps = 5/96 (5%)
Query: 188 DPIYVAYHDEEWGVPVHDDKLLFELLVLTAAQVGSDWTSVLKKRQAFREAFSGFDAE-VV 246
D +Y + H EE+ D KL E + VG D L + R D + +V
Sbjct: 783 DDVYTSIHIEEYESEARDTKLGPEEITREIPNVGEDALKDLDEMGIIRIGAEVQDGDLLV 842
Query: 247 AKFTEKKMTSLSAN----YAIDLSQVRGIVDNSIRI 278
K T K +T LSA +AI + R + D S+R+
Sbjct: 843 GKVTPKGVTELSAEERLLHAIFGEKAREVRDTSLRV 878
>sp|Q03PU9|RPOB_LACBA DNA-directed RNA polymerase subunit beta OS=Lactobacillus brevis
(strain ATCC 367 / JCM 1170) GN=rpoB PE=3 SV=1
Length = 1203
Score = 32.7 bits (73), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 42/96 (43%), Gaps = 5/96 (5%)
Query: 188 DPIYVAYHDEEWGVPVHDDKLLFELLVLTAAQVGSDWTSVLKKRQAFREAFSGFDAEV-V 246
D +Y + H EE+ D KL E + VG D L + R D ++ V
Sbjct: 781 DDVYTSIHIEEYESEARDTKLGPEEMTREIPNVGEDALKNLDEDGIIRVGAEVQDGDILV 840
Query: 247 AKFTEKKMTSLSAN----YAIDLSQVRGIVDNSIRI 278
K T K +T LSA +AI + R + D S+++
Sbjct: 841 GKVTPKGVTELSAEERLLHAIFGEKAREVRDTSLKV 876
>sp|Q8GCR6|RPOB1_ENTFC DNA-directed RNA polymerase subunit beta OS=Enterococcus faecium
GN=rpoB PE=3 SV=1
Length = 1208
Score = 32.3 bits (72), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 42/96 (43%), Gaps = 5/96 (5%)
Query: 188 DPIYVAYHDEEWGVPVHDDKLLFELLVLTAAQVGSDWTSVLKKRQAFREAFSGFDAE-VV 246
D +Y + H EE+ D KL E + VG D L + R D + +V
Sbjct: 783 DDVYTSIHIEEYESEARDTKLGPEEITREIPNVGEDALKDLDEMGIIRIGAEVQDGDLLV 842
Query: 247 AKFTEKKMTSLSAN----YAIDLSQVRGIVDNSIRI 278
K T K +T LSA +AI + R + D S+R+
Sbjct: 843 GKVTPKGVTELSAEERLLHAIFGEKAREVRDTSLRV 878
>sp|Q82Z40|RPOB_ENTFA DNA-directed RNA polymerase subunit beta OS=Enterococcus faecalis
(strain ATCC 700802 / V583) GN=rpoB PE=3 SV=1
Length = 1207
Score = 32.3 bits (72), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 42/96 (43%), Gaps = 5/96 (5%)
Query: 188 DPIYVAYHDEEWGVPVHDDKLLFELLVLTAAQVGSDWTSVLKKRQAFREAFSGFDAE-VV 246
D +Y + H EE+ D KL E + VG D L + R D + +V
Sbjct: 783 DDVYTSVHIEEYESEARDTKLGPEEITREIPNVGEDALKDLDEMGIIRIGAEVQDGDLLV 842
Query: 247 AKFTEKKMTSLSAN----YAIDLSQVRGIVDNSIRI 278
K T K +T LSA +AI + R + D S+R+
Sbjct: 843 GKVTPKGVTELSAEERLLHAIFGEKAREVRDTSLRV 878
>sp|Q88XZ3|RPOB_LACPL DNA-directed RNA polymerase subunit beta OS=Lactobacillus plantarum
(strain ATCC BAA-793 / NCIMB 8826 / WCFS1) GN=rpoB PE=3
SV=2
Length = 1201
Score = 31.6 bits (70), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 41/94 (43%), Gaps = 5/94 (5%)
Query: 190 IYVAYHDEEWGVPVHDDKLLFELLVLTAAQVGSDWTSVLKKRQAFREAFSGFDAEV-VAK 248
+Y + H EE+ D KL E + VG D L + R D ++ V K
Sbjct: 783 VYTSIHIEEYESEARDTKLGPEEMTREIPNVGEDALKNLDEDGIIRIGAEVKDGDILVGK 842
Query: 249 FTEKKMTSLSAN----YAIDLSQVRGIVDNSIRI 278
T K +T LSA +AI + R + D S+R+
Sbjct: 843 VTPKGVTELSAEERLLHAIFGEKAREVRDTSLRV 876
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.129 0.371
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 134,966,046
Number of Sequences: 539616
Number of extensions: 5532214
Number of successful extensions: 16017
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 72
Number of HSP's that attempted gapping in prelim test: 15980
Number of HSP's gapped (non-prelim): 102
length of query: 375
length of database: 191,569,459
effective HSP length: 119
effective length of query: 256
effective length of database: 127,355,155
effective search space: 32602919680
effective search space used: 32602919680
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 62 (28.5 bits)