Query 017244
Match_columns 375
No_of_seqs 164 out of 1140
Neff 3.8
Searched_HMMs 29240
Date Mon Mar 25 11:18:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017244.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017244hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2jg6_A DNA-3-methyladenine gly 100.0 5.2E-88 1.8E-92 614.5 17.6 181 177-359 1-183 (186)
2 2ofk_A 3-methyladenine DNA gly 100.0 4.7E-87 1.6E-91 607.1 17.9 180 177-358 1-182 (183)
3 3n0u_A Probable N-glycosylase/ 97.4 0.00033 1.1E-08 64.8 8.2 105 205-347 46-152 (219)
4 1kea_A Possible G-T mismatches 96.8 0.011 3.9E-07 53.8 11.4 70 209-280 35-104 (221)
5 1orn_A Endonuclease III; DNA r 96.2 0.029 9.9E-07 51.4 10.5 70 209-280 33-102 (226)
6 1pu6_A 3-methyladenine DNA gly 96.2 0.051 1.7E-06 49.6 11.8 107 209-345 30-141 (218)
7 3n5n_X A/G-specific adenine DN 96.2 0.078 2.7E-06 50.9 13.6 72 206-280 46-117 (287)
8 2yg9_A DNA-3-methyladenine gly 96.0 0.035 1.2E-06 50.9 9.8 129 186-345 37-166 (225)
9 2abk_A Endonuclease III; DNA-r 95.1 0.049 1.7E-06 49.1 7.5 71 208-280 28-98 (211)
10 2h56_A DNA-3-methyladenine gly 95.0 0.04 1.4E-06 50.7 6.7 129 187-346 29-160 (233)
11 3fhg_A Mjogg, N-glycosylase/DN 95.0 0.068 2.3E-06 48.2 7.9 110 204-347 28-139 (207)
12 3fhf_A Mjogg, N-glycosylase/DN 94.8 0.22 7.5E-06 45.8 11.0 124 204-365 39-165 (214)
13 1kg2_A A/G-specific adenine gl 94.6 0.084 2.9E-06 48.1 7.5 69 208-279 29-97 (225)
14 3fsp_A A/G-specific adenine gl 94.5 0.29 1E-05 47.4 11.7 73 205-280 35-107 (369)
15 4e9f_A Methyl-CPG-binding doma 93.7 0.29 9.9E-06 43.1 9.0 65 210-276 32-96 (161)
16 4b21_A Probable DNA-3-methylad 93.0 0.28 9.5E-06 45.3 8.0 129 187-345 36-170 (232)
17 3s6i_A DNA-3-methyladenine gly 92.3 0.31 1.1E-05 44.7 7.3 128 187-347 25-162 (228)
18 3i0w_A 8-oxoguanine-DNA-glycos 89.1 1.5 5.1E-05 41.6 8.9 128 187-347 94-234 (290)
19 2jhn_A ALKA, 3-methyladenine D 85.7 1.1 3.6E-05 42.5 5.7 128 181-346 90-232 (295)
20 1mpg_A ALKA, 3-methyladenine D 85.5 2.1 7.3E-05 40.0 7.7 120 200-352 104-240 (282)
21 2xhi_A N-glycosylase/DNA lyase 77.7 4.8 0.00016 39.4 7.2 130 187-346 131-275 (360)
22 2d3d_A VTS1 protein; RNA bindi 73.9 5.6 0.00019 32.3 5.5 47 232-278 31-77 (88)
23 2b6g_A VTS1P; alpha-helix, pen 68.8 11 0.00038 32.1 6.5 54 224-278 55-108 (119)
24 1v38_A SAM-domain protein sams 67.9 5 0.00017 31.0 3.8 43 232-274 25-70 (78)
25 1ucv_A Ephrin type-A receptor 64.5 9 0.00031 29.5 4.7 46 232-277 20-68 (81)
26 2es6_A VTS1P; SAM domain, prot 64.5 9.4 0.00032 31.8 5.0 46 232-277 44-89 (101)
27 2kso_A Ephrin type-A receptor 60.5 19 0.00065 28.0 5.9 45 232-276 29-76 (82)
28 1b4f_A EPHB2; SAM domain, EPH 59.8 14 0.00047 28.4 5.0 47 232-278 24-73 (82)
29 2dl0_A SAM and SH3 domain-cont 57.4 5.3 0.00018 32.3 2.3 43 232-274 36-81 (97)
30 2eao_A Ephrin type-B receptor 56.1 13 0.00045 29.7 4.4 44 232-275 35-81 (99)
31 2p5k_A Arginine repressor; DNA 55.0 13 0.00045 26.0 3.8 31 318-349 22-52 (64)
32 2e8n_A Ephrin type-A receptor 52.8 11 0.00036 29.6 3.3 46 232-277 25-73 (88)
33 1b0x_A Protein (EPHA4 receptor 51.2 23 0.0008 28.0 5.1 46 232-277 39-87 (94)
34 2k4p_A Phosphatidylinositol-3, 51.0 19 0.00063 28.6 4.5 42 232-273 39-83 (86)
35 2qkq_A Ephrin type-B receptor 49.7 20 0.00069 27.5 4.4 45 232-276 28-75 (83)
36 1x40_A ARAP2; ASAP-related pro 49.7 12 0.0004 29.7 3.1 44 232-275 28-74 (91)
37 3h8m_A Ephrin type-A receptor 48.1 27 0.00093 27.7 5.0 39 232-274 38-83 (90)
38 1eh2_A EPS15; calcium binding, 46.4 7 0.00024 31.3 1.3 45 220-265 3-47 (106)
39 3kka_C Ephrin type-A receptor 46.0 25 0.00085 27.7 4.5 43 232-274 34-79 (86)
40 2kg5_A ARF-GAP, RHO-GAP domain 44.4 22 0.00075 28.8 4.0 43 232-274 39-84 (100)
41 3k1r_B Usher syndrome type-1G 43.7 44 0.0015 25.5 5.4 44 231-277 18-61 (74)
42 3sei_A Caskin-1; SAM domain, p 43.0 24 0.00081 30.3 4.2 43 232-274 23-67 (149)
43 1fi6_A EH domain protein REPS1 42.0 4.8 0.00017 30.6 -0.3 43 229-271 6-48 (92)
44 3hil_A Ephrin type-A receptor 41.9 20 0.00069 28.0 3.3 38 232-273 36-80 (82)
45 3sei_A Caskin-1; SAM domain, p 41.1 45 0.0015 28.5 5.7 45 233-277 93-140 (149)
46 2ean_A Connector enhancer of k 40.8 47 0.0016 25.2 5.2 44 232-277 32-75 (83)
47 2gle_A Neurabin-1; SAM domain, 38.0 77 0.0026 23.3 5.9 46 232-277 22-69 (74)
48 3bs5_B Connector enhancer of k 35.3 59 0.002 24.4 4.9 43 232-276 28-70 (80)
49 1c07_A Protein (epidermal grow 33.1 5.3 0.00018 30.6 -1.3 44 229-272 7-50 (95)
50 4h62_V Mediator of RNA polymer 32.0 15 0.00051 24.3 0.9 15 246-260 6-20 (31)
51 2kgr_A Intersectin-1; structur 29.4 11 0.00037 29.9 -0.1 49 224-272 6-54 (111)
52 1oxj_A RNA-binding protein sma 28.8 74 0.0025 28.8 5.2 43 232-275 20-62 (173)
53 2znm_A Thiol:disulfide interch 28.6 1.1E+02 0.0038 25.3 6.1 90 178-275 32-130 (195)
54 2lc0_A Putative uncharacterize 28.0 20 0.00069 30.5 1.3 25 315-339 83-107 (132)
55 2jq6_A EH domain-containing pr 27.7 9.8 0.00033 32.5 -0.7 42 222-265 42-83 (139)
56 1k94_A Grancalcin; penta-EF-ha 27.5 32 0.0011 27.4 2.4 47 227-273 65-113 (165)
57 2f3n_A SH3 and multiple ankyri 27.3 54 0.0019 24.6 3.5 45 233-277 21-67 (76)
58 2p4g_A Hypothetical protein; p 26.9 43 0.0015 30.8 3.4 30 320-350 178-211 (270)
59 1qjt_A EH1, epidermal growth f 26.1 18 0.00061 28.1 0.6 42 230-271 9-50 (99)
60 2yvq_A Carbamoyl-phosphate syn 25.4 43 0.0015 28.1 2.9 31 317-347 38-68 (143)
61 2lmr_A ODIN, ankyrin repeat an 23.9 48 0.0017 26.9 2.8 43 232-274 42-89 (101)
62 3h3m_A Flagellar protein FLIT; 23.7 1.4E+02 0.0049 25.2 5.8 80 208-289 29-123 (126)
63 3bs7_A Protein aveugle; sterIl 23.6 1.7E+02 0.0059 21.6 5.7 45 233-277 24-70 (78)
64 3bq7_A Diacylglycerol kinase d 23.5 93 0.0032 23.6 4.2 44 234-277 27-72 (81)
65 2kiv_A Ankyrin repeat and ster 23.2 48 0.0016 28.1 2.8 42 233-274 28-74 (148)
66 1kdx_B CREB; complex (transcri 23.0 11 0.00036 25.0 -1.1 18 225-242 7-24 (28)
67 2azn_A HTP reductase, putative 22.0 61 0.0021 28.4 3.3 30 320-350 133-166 (219)
68 2k9i_A Plasmid PRN1, complete 20.8 1.6E+02 0.0056 19.8 4.8 31 206-238 17-47 (55)
No 1
>2jg6_A DNA-3-methyladenine glycosidase; 3-methyladenine-DNA-glycosylase-I, hydrolase; 1.70A {Staphylococcus aureus} PDB: 4aia_A* 4ai5_A* 4ai4_A
Probab=100.00 E-value=5.2e-88 Score=614.50 Aligned_cols=181 Identities=37% Similarity=0.736 Sum_probs=177.4
Q ss_pred CCCCCCCCCCCCchhhhhhhcCCCccccChHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHhcCCCHHHHhcCCHHHHHH
Q 017244 177 EKRCSFITPNSDPIYVAYHDEEWGVPVHDDKLLFELLVLTAAQVGSDWTSVLKKRQAFREAFSGFDAEVVAKFTEKKMTS 256 (375)
Q Consensus 177 ~~RC~W~~~~~dply~~YHD~EWG~Pv~DDr~LFEmL~LEgfQAGLSW~tVLkKReafReAF~gFD~ekVA~~tEedIer 256 (375)
|+||.|++ +||+|++|||+|||+|+|||+.|||+||||+|||||||.|||+|||+||+||+||||++||.|+|+|||+
T Consensus 1 m~RC~W~~--~~ply~~YHD~EWG~Pv~Dd~~LFE~L~LEgfQAGLSW~tIL~KRe~fR~AF~~FD~~~VA~~~e~dve~ 78 (186)
T 2jg6_A 1 MNECAFGT--KDPVYLNYHDHVWGQPLYDSKALFKLLALESQHAGLSWLTILKKKEAYEEAFYDFEPEKVAQMTAQDIDR 78 (186)
T ss_dssp CTTTTTTC--CCHHHHHHHHHTTTSCCCCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHTGGGCHHHHTTCCHHHHHH
T ss_pred CCCCCCCC--CChHHHHHHHhccCCcccCcHHHHHHHHHHHHhccCCHHHHHHhHHHHHHHHcCCCHHHHhCCCHHHHHH
Confidence 57999985 8999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCcchhH--HHHHHHHhhHHHHHHHHHhhCCHHHhcccccCCccccCCCCCCCCCCCCCHHHHHHHHHHHHcCCCccc
Q 017244 257 LSANYAIDL--SQVRGIVDNSIRILEVKKQFGSFDKYLWGFVNHKPINTQYRSSQKIPVKTSKSEAISKDMVKKGFRFVG 334 (375)
Q Consensus 257 Ll~D~gIIR--~KI~AVI~NArail~i~~E~GSF~~ylWsFv~~kpi~~~~~~~~~iP~~t~lS~~iSKdLKKrGFkFVG 334 (375)
||+|++||| +||+|+|+||+++++|++|||||++|||+||+++||+|++.+..++|++|++|++||||||||||+|||
T Consensus 79 Ll~d~gIIRnr~KI~A~i~NA~~~l~i~~e~gsf~~ylW~fv~~~p~~~~~~~~~~vp~~t~~S~~lsKdLKkrGFkFvG 158 (186)
T 2jg6_A 79 LMTFPNIVHHRKKLEAIVNQAQGYLKIEQAYGSFSKFLWSYVNGKPKDLQYEHASDRITVDDTATQLSKDLKQYGFKFLG 158 (186)
T ss_dssp HTTCTTSCCCHHHHHHHHHHHHHHHHHHHHHSCHHHHHHGGGTTSCEECCCCSGGGCCSCCHHHHHHHHHHHTTTCCSCC
T ss_pred HhcCccchhhHHHHHHHHHHHHHHHHHHHhcCCHHHHHHhcCCCCCccCCccchhhcCCCCHHHHHHHHHHHHCCCeeec
Confidence 999999986 799999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHhcccccccccCcchh
Q 017244 335 PTVIHSFMQAAGLTNDHLITCTRHL 359 (375)
Q Consensus 335 PTtiYSFMQAvG~VNDHl~~C~~~~ 359 (375)
||||||||||+||||||+++|+++.
T Consensus 159 pt~~YafmQA~G~vndH~~~C~~~~ 183 (186)
T 2jg6_A 159 PVTVFSFLEAAGLYDAHLKDCPSKP 183 (186)
T ss_dssp HHHHHHHHHHTTSEECCCTTCTTCC
T ss_pred hHHHHHHHHHhcccCccccCccccC
Confidence 9999999999999999999999874
No 2
>2ofk_A 3-methyladenine DNA glycosylase I, constitutive; DNA repair, base excision, helix-hairpin-helix, hydrolase; HET: PGE; 1.50A {Salmonella typhi} PDB: 2ofi_A* 1lmz_A 1nku_A 1p7m_A*
Probab=100.00 E-value=4.7e-87 Score=607.07 Aligned_cols=180 Identities=41% Similarity=0.773 Sum_probs=176.2
Q ss_pred CCCCCCCCCCCCchhhhhhhcCCCccccChHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHhcCCCHHHHhcCCHHHHHH
Q 017244 177 EKRCSFITPNSDPIYVAYHDEEWGVPVHDDKLLFELLVLTAAQVGSDWTSVLKKRQAFREAFSGFDAEVVAKFTEKKMTS 256 (375)
Q Consensus 177 ~~RC~W~~~~~dply~~YHD~EWG~Pv~DDr~LFEmL~LEgfQAGLSW~tVLkKReafReAF~gFD~ekVA~~tEedIer 256 (375)
|+||.|++ +||+|++|||+|||+|+|||+.|||+||||+|||||||.|||+||++||+||+||||++||.|+|+|||+
T Consensus 1 ~~RC~W~~--~~ply~~YHD~EWG~P~~Dd~~LFE~L~Le~fQAGLSW~tIL~KRe~fr~AF~~Fd~~~VA~~~e~~ve~ 78 (183)
T 2ofk_A 1 MQRCDWVS--QDPLYIAYHDNEWGVPETDSRKLFEMICLEGQQAGLSWITVLKKRENYRACFHQFDPIRIAAMQEEDVER 78 (183)
T ss_dssp -CCCTTCC--SCHHHHHHHHHTTTCCCCCHHHHHHHHHHHHHTTTSCHHHHHHTHHHHHHHTGGGCHHHHHTCCHHHHHH
T ss_pred CCCCCCCC--CChHHHHHHHhccCCcccCcHHHHHHHHHHHHhccCCHHHHHHhHHHHHHHHcCCCHHHHcCCCHHHHHH
Confidence 47999985 8999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCcchhH--HHHHHHHhhHHHHHHHHHhhCCHHHhcccccCCccccCCCCCCCCCCCCCHHHHHHHHHHHHcCCCccc
Q 017244 257 LSANYAIDL--SQVRGIVDNSIRILEVKKQFGSFDKYLWGFVNHKPINTQYRSSQKIPVKTSKSEAISKDMVKKGFRFVG 334 (375)
Q Consensus 257 Ll~D~gIIR--~KI~AVI~NArail~i~~E~GSF~~ylWsFv~~kpi~~~~~~~~~iP~~t~lS~~iSKdLKKrGFkFVG 334 (375)
||+|++||| +||+|||+||+++++|++|||||++|||+|||++||++++.+..++|++|++|++|||+||||||+|||
T Consensus 79 Ll~d~~IIRnr~KI~A~i~NA~~~l~i~~e~Gsf~~ylW~fv~~~pi~~~~~~~~~vp~~t~~S~~lsk~LKkrGfkFvG 158 (183)
T 2ofk_A 79 LLQNTGIIRHRGKIQAIISNARAWLAMEQNGESFADFVWSFVDGQPQITQAASLDKIPTSTPASDALAKALKKRGFKFVG 158 (183)
T ss_dssp HTTCTTSCCCHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHTTTTSCEECCCSSGGGSCSCCHHHHHHHHHHHHTTCCSCC
T ss_pred HhcCCcchhhHHHHHHHHHHHHHHHHHHHhcCCHHHHHhhcCCCCCccCCccchhhccCCCHHHHHHHHHHHhCCCeecC
Confidence 999999986 799999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHhcccccccccCcch
Q 017244 335 PTVIHSFMQAAGLTNDHLITCTRH 358 (375)
Q Consensus 335 PTtiYSFMQAvG~VNDHl~~C~~~ 358 (375)
|||||+||||+||||||+++|++|
T Consensus 159 pT~~yafmQA~G~VndH~~~C~~~ 182 (183)
T 2ofk_A 159 TTICYSFMQACGLVNDHITGCFCH 182 (183)
T ss_dssp HHHHHHHHHHTTSEECCCTTSTTC
T ss_pred hHHHHHHHHHcCcccCcccCCCCC
Confidence 999999999999999999999986
No 3
>3n0u_A Probable N-glycosylase/DNA lyase; structural genomics, ISFI, DNA repair, 8-oxoguanine, base EX repair, PSI-2, protein structure initiative; 1.50A {Thermotoga maritima}
Probab=97.44 E-value=0.00033 Score=64.78 Aligned_cols=105 Identities=10% Similarity=0.127 Sum_probs=81.8
Q ss_pred ChHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHhcCCCHHHHhcCCHHHHHHhhcCcc--hhHHHHHHHHhhHHHHHHHH
Q 017244 205 DDKLLFELLVLTAAQVGSDWTSVLKKRQAFREAFSGFDAEVVAKFTEKKMTSLSANYA--IDLSQVRGIVDNSIRILEVK 282 (375)
Q Consensus 205 DDr~LFEmL~LEgfQAGLSW~tVLkKReafReAF~gFD~ekVA~~tEedIerLl~D~g--IIR~KI~AVI~NArail~i~ 282 (375)
.+.-.||.|+..++.+..+|..+.+-.+.+ |+.++.+++++|++++..-| .-++|.+.++++|+.+
T Consensus 46 ~~~~~fe~Lv~~ILsqqts~~~~~~a~~~L--------p~~l~~~~~eeL~~~Ir~~G~Rf~~~KA~~I~~~a~~i---- 113 (219)
T 3n0u_A 46 TEEDLFCELSFCVLTANWSAEGGIRAQKEI--------GKGFVHLPLEELAEKLREVGHRYPQKRAEFIVENRKLL---- 113 (219)
T ss_dssp CHHHHHHHHHHHHHTTTSCHHHHHHHHHHH--------TTHHHHCCHHHHHHHHHHTTCSSHHHHHHHHHHHGGGT----
T ss_pred CCCCHHHHHHHHHHhCCCCHHHHHHHHHHH--------HHHHHcCCHHHHHHHHHHhcchHHHHHHHHHHHHHHHH----
Confidence 567899999999999999999998765555 78899999999999999999 7789999999999876
Q ss_pred HhhCCHHHhcccccCCccccCCCCCCCCCCCCCHHHHHHHHHHHHcCCCccchhhHHHHHHHhcc
Q 017244 283 KQFGSFDKYLWGFVNHKPINTQYRSSQKIPVKTSKSEAISKDMVKKGFRFVGPTVIHSFMQAAGL 347 (375)
Q Consensus 283 ~E~GSF~~ylWsFv~~kpi~~~~~~~~~iP~~t~lS~~iSKdLKKrGFkFVGPTtiYSFMQAvG~ 347 (375)
|+|.++. ++ ++ ...-+.|.+ .++=|||.|+-.||...|.
T Consensus 114 ---g~l~~~~----~~-~~-----------------~~~r~~L~~-~l~GVG~kTA~~vL~~~g~ 152 (219)
T 3n0u_A 114 ---GKLKNLV----KG-DP-----------------FQSREFLVR-NAKGIGWKEASHFLRNTGV 152 (219)
T ss_dssp ---TTHHHHH----HS-CH-----------------HHHHHHHHH-HSTTCCHHHHHHHHHTTTC
T ss_pred ---HHHHHHh----cC-Cc-----------------HHHHHHHHH-hCCCCCHHHHHHHHHHcCC
Confidence 4554443 11 11 122344542 3788999999999887775
No 4
>1kea_A Possible G-T mismatches repair enzyme; DNA repair, DNA glycosylase, DNA mismatch, methylation; 2.00A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.96.1.2
Probab=96.75 E-value=0.011 Score=53.77 Aligned_cols=70 Identities=9% Similarity=0.040 Sum_probs=64.8
Q ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHHHhcCCCHHHHhcCCHHHHHHhhcCcchhHHHHHHHHhhHHHHHH
Q 017244 209 LFELLVLTAAQVGSDWTSVLKKRQAFREAFSGFDAEVVAKFTEKKMTSLSANYAIDLSQVRGIVDNSIRILE 280 (375)
Q Consensus 209 LFEmL~LEgfQAGLSW~tVLkKReafReAF~gFD~ekVA~~tEedIerLl~D~gIIR~KI~AVI~NArail~ 280 (375)
.||.|+-+++-.-.+|..+.+-...|.+.| .+++.|+..++++|++++..-|+-+.|.+.++.=|+.+++
T Consensus 35 pfe~lv~~IlsQqts~~~~~~~~~~l~~~f--ptp~~la~a~~e~l~~~i~~~G~~~~KA~~l~~~a~~i~~ 104 (221)
T 1kea_A 35 PYVILITEILLRRTTAGHVKKIYDKFFVKY--KCFEDILKTPKSEIAKDIKEIGLSNQRAEQLKELARVVIN 104 (221)
T ss_dssp HHHHHHHHHHTTTSCHHHHHHHHHHHHHHC--CSHHHHHHSCHHHHHHHTGGGSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHHC--CCHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
Confidence 799999999999999999999999999987 5799999999999999999999999999999998888754
No 5
>1orn_A Endonuclease III; DNA repair, DNA glycosylase, [4Fe-4S] cluster, iron-sulfur cluster, hydrolase/DNA complex; HET: PED; 1.70A {Geobacillus stearothermophilus} SCOP: a.96.1.1 PDB: 1orp_A* 1p59_A*
Probab=96.22 E-value=0.029 Score=51.43 Aligned_cols=70 Identities=13% Similarity=0.112 Sum_probs=64.5
Q ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHHHhcCCCHHHHhcCCHHHHHHhhcCcchhHHHHHHHHhhHHHHHH
Q 017244 209 LFELLVLTAAQVGSDWTSVLKKRQAFREAFSGFDAEVVAKFTEKKMTSLSANYAIDLSQVRGIVDNSIRILE 280 (375)
Q Consensus 209 LFEmL~LEgfQAGLSW~tVLkKReafReAF~gFD~ekVA~~tEedIerLl~D~gIIR~KI~AVI~NArail~ 280 (375)
.||.|+-+++-.-.+|..+.+-.+.|.+.|- +++.++..++++|++++..-|+-+.|.+.++.=|+.+++
T Consensus 33 pfe~Lv~~IlsQqts~~~v~~~~~~l~~~fp--t~~~la~a~~~~l~~~i~~~G~~~~KA~~l~~~a~~i~~ 102 (226)
T 1orn_A 33 PFELLIAVVLSAQCTDALVNKVTKRLFEKYR--TPHDYIAVPLEELEQDIRSIGLYRNKARNIQKLCAMLID 102 (226)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHHHHHHHHHCC--SHHHHHSSCHHHHHHHTGGGSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHHCC--CHHHHHcCCHHHHHHHHHHcCChHHHHHHHHHHHHHHHH
Confidence 6999999999999999999999999988884 799999999999999999999998999999998888753
No 6
>1pu6_A 3-methyladenine DNA glycosylase; helix-hairpin-helix, base excision repair, hydrolase; HET: KCX; 1.64A {Helicobacter pylori} SCOP: a.96.1.5 PDB: 1pu7_A* 1pu8_A*
Probab=96.16 E-value=0.051 Score=49.55 Aligned_cols=107 Identities=19% Similarity=0.225 Sum_probs=82.8
Q ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHHH-hcCCC----HHHHhcCCHHHHHHhhcCcchhHHHHHHHHhhHHHHHHHHH
Q 017244 209 LFELLVLTAAQVGSDWTSVLKKRQAFREA-FSGFD----AEVVAKFTEKKMTSLSANYAIDLSQVRGIVDNSIRILEVKK 283 (375)
Q Consensus 209 LFEmL~LEgfQAGLSW~tVLkKReafReA-F~gFD----~ekVA~~tEedIerLl~D~gIIR~KI~AVI~NArail~i~~ 283 (375)
-||.|+-.++-.-.+|..+.+-...|.+. |-..+ ++.++..+++++++++..-|+-++|.+.++.=|+.++ +
T Consensus 30 pfe~Lv~~ILsQqts~~~v~~~~~~L~~~~~pt~~~~~t~~~la~~~~e~L~~~ir~~G~~~~KA~~L~~~a~~i~---~ 106 (218)
T 1pu6_A 30 KFEALLGAVLTQNTKFEAVLKSLENLKNAFILENDDEINLKKIAYIEFSKLAECVRPSGFYNQKAKRLIDLSGNIL---K 106 (218)
T ss_dssp SHHHHHHHHHTTTSCHHHHHHHHHHHHHTTSSCSCHHHHHHHHHHSCHHHHHHHTGGGSCHHHHHHHHHHHHHHHH---H
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHccCCCccccccHHHHHhCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHH---H
Confidence 59999999999999999999988888887 54322 9999999999999999999998999999988888764 4
Q ss_pred hhCCHHHhcccccCCccccCCCCCCCCCCCCCHHHHHHHHHHHHcCCCccchhhHHHHHHHh
Q 017244 284 QFGSFDKYLWGFVNHKPINTQYRSSQKIPVKTSKSEAISKDMVKKGFRFVGPTVIHSFMQAA 345 (375)
Q Consensus 284 E~GSF~~ylWsFv~~kpi~~~~~~~~~iP~~t~lS~~iSKdLKKrGFkFVGPTtiYSFMQAv 345 (375)
++|+|..+- . | ..-+.|. .++-|||.|+..+|.-+
T Consensus 107 ~~~~l~~~~--~----~-------------------~~~~~L~--~lpGIG~kTA~~il~~a 141 (218)
T 1pu6_A 107 DFQSFENFK--Q----E-------------------VTREWLL--DQKGIGKESADAILCYA 141 (218)
T ss_dssp HHSSHHHHH--H----H-------------------CCHHHHH--TSTTCCHHHHHHHHHHT
T ss_pred hcCChhhcc--c----h-------------------HHHHHHH--cCCCcCHHHHHHHHHHH
Confidence 567765420 0 0 0112343 47888888888887644
No 7
>3n5n_X A/G-specific adenine DNA glycosylase; alpha-helices, helix-hairpin-helix motif, iron-sulfur cluste hydrolase; 2.30A {Homo sapiens}
Probab=96.15 E-value=0.078 Score=50.87 Aligned_cols=72 Identities=11% Similarity=0.173 Sum_probs=64.8
Q ss_pred hHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHhcCCCHHHHhcCCHHHHHHhhcCcchhHHHHHHHHhhHHHHHH
Q 017244 206 DKLLFELLVLTAAQVGSDWTSVLKKRQAFREAFSGFDAEVVAKFTEKKMTSLSANYAIDLSQVRGIVDNSIRILE 280 (375)
Q Consensus 206 Dr~LFEmL~LEgfQAGLSW~tVLkKReafReAF~gFD~ekVA~~tEedIerLl~D~gIIR~KI~AVI~NArail~ 280 (375)
.+..||.|+-+++-.-.+|..|.+-.+.|.+.|- +++.+|..++++|++++.--|.-+ |.+.++.=|+.+++
T Consensus 46 ~~dpfe~LVs~ILsQQts~~~v~~~~~rL~~~fp--tpe~La~a~~eel~~~ir~lG~~~-KA~~L~~~A~~i~~ 117 (287)
T 3n5n_X 46 DRRAYAVWVSEVMLQQTQVATVINYYTGWMQKWP--TLQDLASASLEEVNQLWAGLGYYS-RGRRLQEGARKVVE 117 (287)
T ss_dssp HHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCC--SHHHHHTSCHHHHHHHHTTSSCHH-HHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhCCCcHHHHHHHHHHHHHHCC--CHHHHHcCCHHHHHHHHHHcCCHH-HHHHHHHHHHHHHH
Confidence 4789999999999999999999999999999885 799999999999999999989887 88888888887753
No 8
>2yg9_A DNA-3-methyladenine glycosidase II, putative; hydrolase, DNA repair; 1.95A {Deinococcus radiodurans} PDB: 2yg8_A
Probab=95.97 E-value=0.035 Score=50.95 Aligned_cols=129 Identities=13% Similarity=0.116 Sum_probs=92.7
Q ss_pred CCCchhhhhhhcCCCc-cccChHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHhcCCCHHHHhcCCHHHHHHhhcCcchh
Q 017244 186 NSDPIYVAYHDEEWGV-PVHDDKLLFELLVLTAAQVGSDWTSVLKKRQAFREAFSGFDAEVVAKFTEKKMTSLSANYAID 264 (375)
Q Consensus 186 ~~dply~~YHD~EWG~-Pv~DDr~LFEmL~LEgfQAGLSW~tVLkKReafReAF~gFD~ekVA~~tEedIerLl~D~gII 264 (375)
..||.+..-.+.--|. +....+-.||.|+-.+.-.-.||..+.+-+..|.+.|...+++.|+..+++++ ..-|+-
T Consensus 37 ~~D~~l~~l~~~~~~~~~~~~~~dpfe~Lv~~IlsQq~s~~~a~~~~~rL~~~~G~ptp~~la~~~~e~L----r~~G~~ 112 (225)
T 2yg9_A 37 SRDPVLAQVTSLCGELPVLAPTPDPFGRLVRSVAGQQLSVKAAQAIYGRLEGLPGGVVPAALLKVSGDDL----RGVGLS 112 (225)
T ss_dssp TTSHHHHHHHHHHCCCCCCCCCSCHHHHHHHHHHHTTSCHHHHHHHHHHHHTSTTCSCHHHHTTSCHHHH----HHTTCC
T ss_pred hcCHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHhCcChHHHHHHHHHHHHHHhCcCCHHHHHcCCHHHH----HHCCCc
Confidence 3688776555544444 33344458999999999999999999999999999998889999999999987 345666
Q ss_pred HHHHHHHHhhHHHHHHHHHhhCCHHHhcccccCCccccCCCCCCCCCCCCCHHHHHHHHHHHHcCCCccchhhHHHHHHH
Q 017244 265 LSQVRGIVDNSIRILEVKKQFGSFDKYLWGFVNHKPINTQYRSSQKIPVKTSKSEAISKDMVKKGFRFVGPTVIHSFMQA 344 (375)
Q Consensus 265 R~KI~AVI~NArail~i~~E~GSF~~ylWsFv~~kpi~~~~~~~~~iP~~t~lS~~iSKdLKKrGFkFVGPTtiYSFMQA 344 (375)
++|.+.+++=|+.+.+ ...+|+.+ ..+| . +.+-+.|. .++-|||-|+..+|..
T Consensus 113 ~~KA~~i~~lA~~~~~---g~~~l~~l-----------------~~~~----~-~e~~~~L~--~l~GIG~~TA~~ill~ 165 (225)
T 2yg9_A 113 WAKVRTVQAAAAAAVS---GQIDFAHL-----------------SGQP----D-ELVIAELV--QLPGIGRWTAEMFLLF 165 (225)
T ss_dssp HHHHHHHHHHHHHHHT---TSSCGGGC-----------------TTSC----H-HHHHHHHH--TSTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh---CCcCHHHH-----------------hcCC----H-HHHHHHHH--cCCCCCHHHHHHHHHH
Confidence 7899999999988854 11122211 1111 1 23345565 4889999999988875
Q ss_pred h
Q 017244 345 A 345 (375)
Q Consensus 345 v 345 (375)
+
T Consensus 166 ~ 166 (225)
T 2yg9_A 166 A 166 (225)
T ss_dssp T
T ss_pred h
Confidence 3
No 9
>2abk_A Endonuclease III; DNA-repair, DNA glycosylase; 1.85A {Escherichia coli} SCOP: a.96.1.1
Probab=95.15 E-value=0.049 Score=49.08 Aligned_cols=71 Identities=15% Similarity=0.123 Sum_probs=61.8
Q ss_pred HHHHHHHHHHHhhcccHHHHHHHHHHHHHHhcCCCHHHHhcCCHHHHHHhhcCcchhHHHHHHHHhhHHHHHH
Q 017244 208 LLFELLVLTAAQVGSDWTSVLKKRQAFREAFSGFDAEVVAKFTEKKMTSLSANYAIDLSQVRGIVDNSIRILE 280 (375)
Q Consensus 208 ~LFEmL~LEgfQAGLSW~tVLkKReafReAF~gFD~ekVA~~tEedIerLl~D~gIIR~KI~AVI~NArail~ 280 (375)
-.||.|+-+++-.-.+|..|.+-.+.|.+.| .+++.++..++++|++++..-|+-+.|.+.++.=|+.+.+
T Consensus 28 ~pfe~lv~~Il~qqts~~~v~~~~~~l~~~f--pt~~~la~a~~~~l~~~i~~~G~~~~KA~~l~~~a~~~~~ 98 (211)
T 2abk_A 28 SPFELLIAVLLSAQATDVSVNKATAKLYPVA--NTPAAMLELGVEGVKTYIKTIGLYNSKAENIIKTCRILLE 98 (211)
T ss_dssp SHHHHHHHHHHTTTSCHHHHHHHHHHHTTTC--CSHHHHHHHHHHHHHHHHTTSTTHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhCCCCHHHHHHHHHHHHHHC--CCHHHHHCCCHHHHHHHHHHcCCChHHHHHHHHHHHHHHH
Confidence 4799999999999999999988777765554 4699999999999999999999988899999888888754
No 10
>2h56_A DNA-3-methyladenine glycosidase; 10174367, EC 3.2.2.-, struc genomics, PSI-2, protein structure initiative, joint center structural genomics; 2.55A {Bacillus halodurans}
Probab=95.01 E-value=0.04 Score=50.71 Aligned_cols=129 Identities=10% Similarity=0.094 Sum_probs=91.2
Q ss_pred CCchhhhhhhcCCCccccChHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHhcCC--CHHHHhcCCHHHHHHhhcCcchh
Q 017244 187 SDPIYVAYHDEEWGVPVHDDKLLFELLVLTAAQVGSDWTSVLKKRQAFREAFSGF--DAEVVAKFTEKKMTSLSANYAID 264 (375)
Q Consensus 187 ~dply~~YHD~EWG~Pv~DDr~LFEmL~LEgfQAGLSW~tVLkKReafReAF~gF--D~ekVA~~tEedIerLl~D~gII 264 (375)
.||.+..-.+.--|.+....+-.||.|+-.+.-.-.+|..+.+-...|.+.|..+ +++.|+..++++| ..-|+-
T Consensus 29 ~d~~l~~l~~~~~~~~~~~~~dpfe~Lv~~IlsQqts~~~a~~~~~rL~~~~G~~fPtp~~la~~~~e~L----r~~G~~ 104 (233)
T 2h56_A 29 QDSRLFQFIEIAGEVQLPTKPNPFQSLVSSIVEQQLSIKAASAIYGRVEQLVGGALEKPEQLYRVSDEAL----RQAGVS 104 (233)
T ss_dssp TCHHHHHHHHHHCCEEEECCSCHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTSCCCCTHHHHTSCHHHH----HHTTCC
T ss_pred cCHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCCCCCHHHHHcCCHHHH----HHcCCC
Confidence 5666654443333433333445899999999999999999999999999999777 9999999999988 344666
Q ss_pred HHHHHHHHhhHHHHHHHHHhhCCHHHhcccccCCccccCCCCCCCCCCCCCHHHHHHHHHHHHcCCCccchhhHHHHHHH
Q 017244 265 LSQVRGIVDNSIRILEVKKQFGSFDKYLWGFVNHKPINTQYRSSQKIPVKTSKSEAISKDMVKKGFRFVGPTVIHSFMQA 344 (375)
Q Consensus 265 R~KI~AVI~NArail~i~~E~GSF~~ylWsFv~~kpi~~~~~~~~~iP~~t~lS~~iSKdLKKrGFkFVGPTtiYSFMQA 344 (375)
++|.+.++.=|+.+++ .+.++... . .+| . +..-+.|. .++-|||-|+-.+|.-
T Consensus 105 ~~KA~~I~~~A~~i~~---~~~~~~~l-~----------------~~p----~-~~~~~~L~--~lpGIG~kTA~~ill~ 157 (233)
T 2h56_A 105 KRKIEYIRHVCEHVES---GRLDFTEL-E----------------GAE----A-TTVIEKLT--AIKGIGQWTAEMFMMF 157 (233)
T ss_dssp HHHHHHHHHHHHHHHT---TSSCHHHH-T----------------TSC----H-HHHHHHHH--TSTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh---CCCCHHHH-h----------------cCC----H-HHHHHHHH--hCCCcCHHHHHHHHHH
Confidence 7899999999988743 22233321 0 011 1 12334554 4888999999988764
Q ss_pred -hc
Q 017244 345 -AG 346 (375)
Q Consensus 345 -vG 346 (375)
.|
T Consensus 158 alg 160 (233)
T 2h56_A 158 SLG 160 (233)
T ss_dssp TTC
T ss_pred hCC
Confidence 45
No 11
>3fhg_A Mjogg, N-glycosylase/DNA lyase, DNA-(apurinic; helix-hairpin-helix, 8-oxoguanine, 8-OXOG, DNA damage, DNA repair, glycosidase, hydrolase; 1.90A {Sulfolobus solfataricus}
Probab=94.96 E-value=0.068 Score=48.24 Aligned_cols=110 Identities=9% Similarity=0.137 Sum_probs=81.9
Q ss_pred cChHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHhcCCCHHHHhcCCHHHHHHhhcCcc--hhHHHHHHHHhhHHHHHHH
Q 017244 204 HDDKLLFELLVLTAAQVGSDWTSVLKKRQAFREAFSGFDAEVVAKFTEKKMTSLSANYA--IDLSQVRGIVDNSIRILEV 281 (375)
Q Consensus 204 ~DDr~LFEmL~LEgfQAGLSW~tVLkKReafReAF~gFD~ekVA~~tEedIerLl~D~g--IIR~KI~AVI~NArail~i 281 (375)
..++-.||.|+-++.-.-.+|..+.+-.+.| ++.++..++++|++++..-| .-++|.+.+.+-|+.+++.
T Consensus 28 ~~~~~~fe~Lv~~ILsqqts~~~~~~~~~~L--------~~~l~~~~~e~l~~~ir~~G~g~~~~KA~~l~~~a~~~~~~ 99 (207)
T 3fhg_A 28 SNEEVWFRELTLCLLTANSSFISAYQALNCL--------GQKIYYANEEEIRNILKSCKYRFYNLKAKYIIMAREKVYGR 99 (207)
T ss_dssp SCHHHHHHHHHHHHHHTTSCHHHHHHHHHHH--------GGGGGTCCHHHHHHHHHHTTCTTHHHHHHHHHHHHHHHTTT
T ss_pred CCcCCHHHHHHHHHHcCCCCHHHHHHHHHHH--------HHHHHcCCHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHH
Confidence 3578899999999999999999999888887 57899999999999998776 6788999999888876431
Q ss_pred HHhhCCHHHhcccccCCccccCCCCCCCCCCCCCHHHHHHHHHHHHcCCCccchhhHHHHHHHhcc
Q 017244 282 KKQFGSFDKYLWGFVNHKPINTQYRSSQKIPVKTSKSEAISKDMVKKGFRFVGPTVIHSFMQAAGL 347 (375)
Q Consensus 282 ~~E~GSF~~ylWsFv~~kpi~~~~~~~~~iP~~t~lS~~iSKdLKKrGFkFVGPTtiYSFMQAvG~ 347 (375)
. .|++..| .+- + + +..-+.|. .++-|||-|+-.+|..+|.
T Consensus 100 ~--~~~l~~~-~~~----~---------------~--~~~~~~L~--~lpGIG~kTA~~il~~~~~ 139 (207)
T 3fhg_A 100 L--KEEIKPL-ADE----D---------------Q--QLARERLL--NIKGIGMQEASHFLRNVGY 139 (207)
T ss_dssp H--HHHHHHH-HHH----C---------------H--HHHHHHHT--TSTTCCHHHHHHHHHHTTC
T ss_pred h--hhhHHHH-hCC----C---------------H--HHHHHHHH--cCCCcCHHHHHHHHHHhCC
Confidence 1 1233333 110 0 0 12334554 6889999999999987676
No 12
>3fhf_A Mjogg, N-glycosylase/DNA lyase, DNA-(apurinic; helix-hairpin-helix, 8-oxoguanine, 8-OXOG, DNA damage, DNA repair, glycosidase; 2.00A {Methanocaldococcus jannaschii} PDB: 3knt_A*
Probab=94.82 E-value=0.22 Score=45.78 Aligned_cols=124 Identities=10% Similarity=0.086 Sum_probs=83.3
Q ss_pred cChHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHhcCCCHHHHhcCCHHHHHHhhcCcc--hhHHHHHHHHhhHHHHHHH
Q 017244 204 HDDKLLFELLVLTAAQVGSDWTSVLKKRQAFREAFSGFDAEVVAKFTEKKMTSLSANYA--IDLSQVRGIVDNSIRILEV 281 (375)
Q Consensus 204 ~DDr~LFEmL~LEgfQAGLSW~tVLkKReafReAF~gFD~ekVA~~tEedIerLl~D~g--IIR~KI~AVI~NArail~i 281 (375)
.+.+-.||.|+..+.-+--+|..|.+--+.++ +.++..++++|++++..-| .-++|-+-+++-|+ +
T Consensus 39 ~~~~~~fe~Lv~~ILsqqt~~~~v~~a~~~L~--------~~l~~~~~eeL~~~Ir~~G~rf~~~KA~~I~~~a~-~--- 106 (214)
T 3fhf_A 39 KSNEEWFKELCFCILTANFTAEGGIRIQKEIG--------DGFLTLPREELEEKLKNLGHRFYRKRAEYIVLARR-F--- 106 (214)
T ss_dssp SCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHT--------THHHHSCHHHHHHHHHHTTCTTHHHHHHHHHHHGG-G---
T ss_pred CCCCChHHHHHHHHHcCCCCHHHHHHHHHHHH--------HHHHCCCHHHHHHHHHHHhhHHHHHHHHHHHHHHH-h---
Confidence 36788999999999999999999998777774 5689999999999999888 77888666665555 2
Q ss_pred HHhhCCHHHhcccccCCccccCCCCCCCCCCCCCHHHHHHHHHHHHcCCCccchhhHHHHHHHhccccccc-ccCcchhh
Q 017244 282 KKQFGSFDKYLWGFVNHKPINTQYRSSQKIPVKTSKSEAISKDMVKKGFRFVGPTVIHSFMQAAGLTNDHL-ITCTRHLQ 360 (375)
Q Consensus 282 ~~E~GSF~~ylWsFv~~kpi~~~~~~~~~iP~~t~lS~~iSKdLKKrGFkFVGPTtiYSFMQAvG~VNDHl-~~C~~~~~ 360 (375)
|.+-+.+-++ .++ + ..-++|.+ .++=|||-|+..+|.-+|. .+-- +|-+.+.-
T Consensus 107 ----~~l~~~~~~~---~~~--------------~---~~re~Ll~-~LpGVG~KTA~~vL~~~g~-~~~~vVDthv~Ri 160 (214)
T 3fhf_A 107 ----KNIKDIVESF---ENE--------------K---VAREFLVR-NIKGIGYKEASHFLRNVGY-DDVAIIDRHILRE 160 (214)
T ss_dssp ----CCHHHHHHHS---SSH--------------H---HHHHHHHH-HSTTCCHHHHHHHHHHTTC-CSCCCCCHHHHHH
T ss_pred ----hHHHHHhccc---CCc--------------H---HHHHHHHH-hCCCCCHHHHHHHHHHcCC-CCcccCcHHHHHH
Confidence 2222221111 000 1 12234431 3788999999999987775 4443 44444444
Q ss_pred hhhhh
Q 017244 361 CTALA 365 (375)
Q Consensus 361 ~~~~~ 365 (375)
+.+++
T Consensus 161 ~~RlG 165 (214)
T 3fhf_A 161 LYENN 165 (214)
T ss_dssp HHHTT
T ss_pred HHHcC
Confidence 44443
No 13
>1kg2_A A/G-specific adenine glycosylase; DNA repair, hydrolase; 1.20A {Escherichia coli} SCOP: a.96.1.2 PDB: 1kg3_A 1muy_A 1kg6_A 1kg5_A 1mun_A 1mud_A 1kg4_A 1weg_A 1wei_A* 1wef_A* 1kg7_A 1kqj_A
Probab=94.56 E-value=0.084 Score=48.09 Aligned_cols=69 Identities=9% Similarity=0.094 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHhhcccHHHHHHHHHHHHHHhcCCCHHHHhcCCHHHHHHhhcCcchhHHHHHHHHhhHHHHH
Q 017244 208 LLFELLVLTAAQVGSDWTSVLKKRQAFREAFSGFDAEVVAKFTEKKMTSLSANYAIDLSQVRGIVDNSIRIL 279 (375)
Q Consensus 208 ~LFEmL~LEgfQAGLSW~tVLkKReafReAF~gFD~ekVA~~tEedIerLl~D~gIIR~KI~AVI~NArail 279 (375)
-.||.|+-+++-.-.+|..+.+-.+.|.+.| .+++.++..++++|++++..-|+- +|.+.++.=|+.++
T Consensus 29 ~pfe~lv~~IlsQqt~~~~v~~~~~~l~~~~--pt~~~la~~~~~~l~~~i~~~G~~-~kA~~l~~~a~~i~ 97 (225)
T 1kg2_A 29 TPYKVWLSEVMLQQTQVATVIPYFERFMARF--PTVTDLANAPLDEVLHLWTGLGYY-ARARNLHKAAQQVA 97 (225)
T ss_dssp CHHHHHHHHHHHTSSCHHHHHHHHHHHHHHC--SSHHHHHHSCHHHHHHHHTTSCCT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHCcCCHHHHHHHHHHHHHHC--CCHHHHHCCCHHHHHHHHHhCChH-HHHHHHHHHHHHHH
Confidence 4799999999999999999998888887776 369999999999999999888887 48888888888775
No 14
>3fsp_A A/G-specific adenine glycosylase; protein-DNA complex, DNA glycosylase, transition state analog, DNA repair; HET: NRI; 2.20A {Geobacillus stearothermophilus} PDB: 3fsq_A* 1rrs_A* 1vrl_A* 1rrq_A* 3g0q_A*
Probab=94.55 E-value=0.29 Score=47.35 Aligned_cols=73 Identities=14% Similarity=0.125 Sum_probs=63.6
Q ss_pred ChHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHhcCCCHHHHhcCCHHHHHHhhcCcchhHHHHHHHHhhHHHHHH
Q 017244 205 DDKLLFELLVLTAAQVGSDWTSVLKKRQAFREAFSGFDAEVVAKFTEKKMTSLSANYAIDLSQVRGIVDNSIRILE 280 (375)
Q Consensus 205 DDr~LFEmL~LEgfQAGLSW~tVLkKReafReAF~gFD~ekVA~~tEedIerLl~D~gIIR~KI~AVI~NArail~ 280 (375)
..+--||.|+-+++-.-.+|.+|..-...|.+.| .+++.+|..++++|++++.--|.-+ |.+.++.=|+.+++
T Consensus 35 ~~~~p~~~lv~~il~qqt~~~~~~~~~~~l~~~~--pt~~~la~a~~~~l~~~i~~~G~~~-ra~~l~~~a~~~~~ 107 (369)
T 3fsp_A 35 KDRDPYKVWVSEVMLQQTRVETVIPYFEQFIDRF--PTLEALADADEDEVLKAWEGLGYYS-RVRNLHAAVKEVKT 107 (369)
T ss_dssp SCCCHHHHHHHHHHTTTSCHHHHHHHHHHHHHHC--CSHHHHHTSCHHHHHHTTTTSSCTH-HHHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHhccCcHHHHHHHHHHHHHHC--CCHHHHHCCCHHHHHHHHHhcChHH-HHHHHHHHHHHHHH
Confidence 3445799999999999999999999988888887 5899999999999999998888877 88888888888754
No 15
>4e9f_A Methyl-CPG-binding domain protein 4; HHH DNA glycosylase family, hydrolase-DNA complex; HET: DNA 3DR; 1.79A {Homo sapiens} PDB: 4e9e_A* 4e9g_A* 4e9h_A* 4ea5_A* 4dk9_A* 1ngn_A 4ea4_A* 4ew4_A* 4evv_A* 4ew0_A* 3iho_A
Probab=93.74 E-value=0.29 Score=43.13 Aligned_cols=65 Identities=18% Similarity=0.133 Sum_probs=55.7
Q ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHHHhcCCCHHHHhcCCHHHHHHhhcCcchhHHHHHHHHhhHH
Q 017244 210 FELLVLTAAQVGSDWTSVLKKRQAFREAFSGFDAEVVAKFTEKKMTSLSANYAIDLSQVRGIVDNSI 276 (375)
Q Consensus 210 FEmL~LEgfQAGLSW~tVLkKReafReAF~gFD~ekVA~~tEedIerLl~D~gIIR~KI~AVI~NAr 276 (375)
|+.|+-+++-+=-+|.+|.+--+.|.+.|- +++.+|..++++|+++..--|.-++|-+.++.-|+
T Consensus 32 ~~vLVs~ILsqQT~~~~v~~~~~~l~~~~p--t~~~la~a~~~el~~~i~~lG~y~~KAk~i~~~a~ 96 (161)
T 4e9f_A 32 WKLLIATIFLNRTSGKMAIPVLWKFLEKYP--SAEVARTADWRDVSELLKPLGLYDLRAKTIVKFSD 96 (161)
T ss_dssp HHHHHHHHHTTTSCHHHHHHHHHHHHHHSC--SHHHHTTSCHHHHHHHHGGGSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhCcHHHHHHHHHHHHHHCC--CHHHHhccChHhHHhHhhhcCCHHHHHHHHHHHhC
Confidence 899999999999999999988888777765 79999999999999999999998877555554443
No 16
>4b21_A Probable DNA-3-methyladenine glycosylase 2; hydrolase-DNA complex, helix-hairpin-helix; HET: BGC 3DR; 1.45A {Schizosaccharomyces pombe} PDB: 4b22_A* 4b23_A* 4b24_A*
Probab=92.96 E-value=0.28 Score=45.32 Aligned_cols=129 Identities=11% Similarity=0.053 Sum_probs=89.6
Q ss_pred CCchhhhhhhcCCCcc--ccChHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHhcC---C-CHHHHhcCCHHHHHHhhcC
Q 017244 187 SDPIYVAYHDEEWGVP--VHDDKLLFELLVLTAAQVGSDWTSVLKKRQAFREAFSG---F-DAEVVAKFTEKKMTSLSAN 260 (375)
Q Consensus 187 ~dply~~YHD~EWG~P--v~DDr~LFEmL~LEgfQAGLSW~tVLkKReafReAF~g---F-D~ekVA~~tEedIerLl~D 260 (375)
.||.+..-.+.--|.. ....+-.||.|+-.+.-.-.||..+.+-+..|.+.|.. | +++.|+..++++|. .
T Consensus 36 ~Dp~l~~li~~~~g~rl~~~~~~dpfe~Lv~~Il~Qq~s~~~a~~~~~rL~~~~G~~~~fPtpe~la~~~~e~Lr----~ 111 (232)
T 4b21_A 36 IDNKWSSLVKKVGPCTLTPHPEHAPYEGIIRAITSQKLSDAATNSIINKFCTQCSDNDEFPTPKQIMETDVETLH----E 111 (232)
T ss_dssp TCHHHHHHHHHHCSCCCCCCTTSCHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHCSSSSCCCHHHHHTSCHHHHH----T
T ss_pred hCHHHHHHHHHcCCCCCCCCCCCCHHHHHHHHHHhCcCcHHHHHHHHHHHHHHhCCCCCCCCHHHHHcCCHHHHH----H
Confidence 5786655555444422 22233479999999999999999999999999999975 5 89999999999863 4
Q ss_pred cchhHHHHHHHHhhHHHHHHHHHhhCCHHHhcccccCCccccCCCCCCCCCCCCCHHHHHHHHHHHHcCCCccchhhHHH
Q 017244 261 YAIDLSQVRGIVDNSIRILEVKKQFGSFDKYLWGFVNHKPINTQYRSSQKIPVKTSKSEAISKDMVKKGFRFVGPTVIHS 340 (375)
Q Consensus 261 ~gIIR~KI~AVI~NArail~i~~E~GSF~~ylWsFv~~kpi~~~~~~~~~iP~~t~lS~~iSKdLKKrGFkFVGPTtiYS 340 (375)
-|+-++|.+.++.=|+.+.+ .+.++|+. +... + -+.+-+.|. .++=|||-|+-.
T Consensus 112 ~Gl~~~Ka~~l~~~A~~~~~--g~~p~l~~-l~~~----------------~-----~~~~~~~L~--~l~GIG~~TA~~ 165 (232)
T 4b21_A 112 CGFSKLKSQEIHIVAEAALN--KQIPSKSE-IEKM----------------S-----EEELMESLS--KIKGVKRWTIEM 165 (232)
T ss_dssp TTCCHHHHHHHHHHHHHHHT--TCSCCHHH-HHHS----------------C-----HHHHHHHHT--TSTTCCHHHHHH
T ss_pred cCCcHHHHHHHHHHHHHHHh--CCCCCHHH-HHcC----------------C-----HHHHHHHHH--hCCCcCHHHHHH
Confidence 67778899999998988753 11112222 1111 0 112344554 378899999988
Q ss_pred HHHHh
Q 017244 341 FMQAA 345 (375)
Q Consensus 341 FMQAv 345 (375)
+|..+
T Consensus 166 ill~a 170 (232)
T 4b21_A 166 YSIFT 170 (232)
T ss_dssp HHHHT
T ss_pred HHHHh
Confidence 76643
No 17
>3s6i_A DNA-3-methyladenine glycosylase 1; DNA glycosylase, DNA repair, helix-hairpin-helix (HHH), ABAS tetrahydrofuran (THF); HET: 3DR; 2.28A {Schizosaccharomyces pombe}
Probab=92.29 E-value=0.31 Score=44.74 Aligned_cols=128 Identities=9% Similarity=0.072 Sum_probs=91.1
Q ss_pred CCchhhhhhhcCCCcccc--ChH-HHHHHHHHHHHhhcccHHHHHHHHHHHHHHh---cCC-CHHHHhcCCHHHHHHhhc
Q 017244 187 SDPIYVAYHDEEWGVPVH--DDK-LLFELLVLTAAQVGSDWTSVLKKRQAFREAF---SGF-DAEVVAKFTEKKMTSLSA 259 (375)
Q Consensus 187 ~dply~~YHD~EWG~Pv~--DDr-~LFEmL~LEgfQAGLSW~tVLkKReafReAF---~gF-D~ekVA~~tEedIerLl~ 259 (375)
.||.+..-.+.--|..+. ..+ -.||.|+-.+.-.-.||..+.+-+..| +.| ..| +++.|+..++++| .
T Consensus 25 ~Dp~l~~li~~~g~~r~~~~~~~~d~fe~Lv~~Il~Qq~s~~~a~~~~~rL-~~~Gg~~~fPtp~~la~~~~e~L----r 99 (228)
T 3s6i_A 25 LDENWKRLVKLVGNYRPNRSMEKKEPYEELIRAVASQQLHSKAANAIFNRF-KSISNNGQFPTPEEIRDMDFEIM----R 99 (228)
T ss_dssp SCHHHHHHHHHHCSCCCCCTTTTSCHHHHHHHHHHHSSSCHHHHHHHHHHH-HTSSGGGSCCCHHHHHHSCHHHH----H
T ss_pred hChHHHHHHHHcCCCCCCCCCCcCCHHHHHHHHHHhCcCCHHHHHHHHHHH-HHhcCCCCCCCHHHHHcCCHHHH----H
Confidence 688776666554454442 223 579999999999999999999999999 888 345 9999999999987 3
Q ss_pred CcchhHHHHHHHHhhHHHHHHHHHhhCCHH--HhcccccCCccccCCCCCCCCCCCCCHHHHHHHHHHHHcCCCccchhh
Q 017244 260 NYAIDLSQVRGIVDNSIRILEVKKQFGSFD--KYLWGFVNHKPINTQYRSSQKIPVKTSKSEAISKDMVKKGFRFVGPTV 337 (375)
Q Consensus 260 D~gIIR~KI~AVI~NArail~i~~E~GSF~--~ylWsFv~~kpi~~~~~~~~~iP~~t~lS~~iSKdLKKrGFkFVGPTt 337 (375)
.-|+-++|.+.+++=|+.+.+ |.+. +.+-. ++ -+.+-+.|. .++-|||-|
T Consensus 100 ~~G~~~rKa~~i~~~A~~~~~-----g~~p~~~~l~~----------------~~-----~~e~~~~L~--~l~GIG~~T 151 (228)
T 3s6i_A 100 ACGFSARKIDSLKSIAEATIS-----GLIPTKEEAER----------------LS-----NEELIERLT--QIKGIGRWT 151 (228)
T ss_dssp HHTCCHHHHHHHHHHHHHHHH-----TSSCCHHHHTT----------------SC-----HHHHHHHHT--TSTTCCHHH
T ss_pred HcCCCHHHHHHHHHHHHHHHc-----CCCCChHHHhc----------------CC-----HHHHHHHHH--hCCCcCHHH
Confidence 456778899999999998862 3331 11111 10 123445664 489999999
Q ss_pred HHHHHH-Hhcc
Q 017244 338 IHSFMQ-AAGL 347 (375)
Q Consensus 338 iYSFMQ-AvG~ 347 (375)
+..+|. +.|-
T Consensus 152 A~~ill~~lg~ 162 (228)
T 3s6i_A 152 VEMLLIFSLNR 162 (228)
T ss_dssp HHHHHHHTSCC
T ss_pred HHHHHHHhCCC
Confidence 988875 4564
No 18
>3i0w_A 8-oxoguanine-DNA-glycosylase; OGG, cacogg, DNA, 8-OXOG, 8OXOG, glycosylase, cytosine, hydrolase,lyase/DNA complex; HET: 8OG; 1.73A {Clostridium acetobutylicum} PDB: 3i0x_A* 3f10_A* 3f0z_A
Probab=89.09 E-value=1.5 Score=41.56 Aligned_cols=128 Identities=18% Similarity=0.212 Sum_probs=89.6
Q ss_pred CCchhhhhhhcCCCccccChHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHhcC-----------C-CHHHHhcCCHHHH
Q 017244 187 SDPIYVAYHDEEWGVPVHDDKLLFELLVLTAAQVGSDWTSVLKKRQAFREAFSG-----------F-DAEVVAKFTEKKM 254 (375)
Q Consensus 187 ~dply~~YHD~EWG~Pv~DDr~LFEmL~LEgfQAGLSW~tVLkKReafReAF~g-----------F-D~ekVA~~tEedI 254 (375)
.||.+..-.+.-.|..+.. +-.||.|+-.+.-.-.||..+.+-...+.+.|.. | +++.|+..+++++
T Consensus 94 ~Dp~l~~~~~~~~glR~~~-~dpfE~Lv~~IlsQq~s~~~a~~~~~rL~~~~G~~~~~~g~~~~~fPtpe~la~~~~e~L 172 (290)
T 3i0w_A 94 RDPLLKKSVDFGEGIRILR-QDPFEILLSFIISANNRIPMIKKCINNISEKAGKKLEYKGKIYYAFPTVDKLHEFTEKDF 172 (290)
T ss_dssp TSHHHHHHHHHTTTCCCCC-CCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHSCEEEETTEEEECCCCHHHHTTCCHHHH
T ss_pred hCHHHHHHHHHCCCCCCCC-CCHHHHHHHHHHhCcccHHHHHHHHHHHHHHhCCCcccCCcccccCCcHHHHHCCCHHHH
Confidence 5776665555556766655 6689999999999999999999999999999754 5 9999999999999
Q ss_pred HHhhcCcchhHHHHHHHHhhHHHHHHHHHhhCCHHHhcccccCCccccCCCCCCCCCCCCCHHHHHHHHHHHHcCCCccc
Q 017244 255 TSLSANYAIDLSQVRGIVDNSIRILEVKKQFGSFDKYLWGFVNHKPINTQYRSSQKIPVKTSKSEAISKDMVKKGFRFVG 334 (375)
Q Consensus 255 erLl~D~gIIR~KI~AVI~NArail~i~~E~GSF~~ylWsFv~~kpi~~~~~~~~~iP~~t~lS~~iSKdLKKrGFkFVG 334 (375)
.++ ++-. |.+.++.=|+++.+ .+.+++... .. + . +..-+.|. .++-||
T Consensus 173 ~~~----g~g~-Ra~~I~~~A~~i~~---g~~~l~~l~-~~----~----------------~-~~~~~~L~--~lpGIG 220 (290)
T 3i0w_A 173 EEC----TAGF-RAKYLKDTVDRIYN---GELNLEYIK-SL----N----------------D-NECHEELK--KFMGVG 220 (290)
T ss_dssp HHT----TCGG-GHHHHHHHHHHHHT---TSSCHHHHH-HS----C----------------H-HHHHHHHT--TSTTCC
T ss_pred HHc----CCch-HHHHHHHHHHHHHh---CCCCHHHHh-cC----C----------------H-HHHHHHHH--hCCCcC
Confidence 873 3322 77788877877642 223443221 00 0 1 12334553 588899
Q ss_pred hhhHHHHHH-Hhcc
Q 017244 335 PTVIHSFMQ-AAGL 347 (375)
Q Consensus 335 PTtiYSFMQ-AvG~ 347 (375)
|-|+-.+|. +.|.
T Consensus 221 ~~TA~~ill~~lg~ 234 (290)
T 3i0w_A 221 PQVADCIMLFSMQK 234 (290)
T ss_dssp HHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHhCCC
Confidence 988877664 4564
No 19
>2jhn_A ALKA, 3-methyladenine DNA-glycosylase; DNA repair, N1-methyladenine, N3-methylcytosine, hyperthermophiles, hydrolase; HET: MBO MES; 1.8A {Archaeoglobus fulgidus} PDB: 2jhj_A
Probab=85.66 E-value=1.1 Score=42.45 Aligned_cols=128 Identities=13% Similarity=0.174 Sum_probs=89.3
Q ss_pred CCCCCCCCchhhhhhhcCCCccccC--hHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHhcC-----------C-CHHHH
Q 017244 181 SFITPNSDPIYVAYHDEEWGVPVHD--DKLLFELLVLTAAQVGSDWTSVLKKRQAFREAFSG-----------F-DAEVV 246 (375)
Q Consensus 181 ~W~~~~~dply~~YHD~EWG~Pv~D--Dr~LFEmL~LEgfQAGLSW~tVLkKReafReAF~g-----------F-D~ekV 246 (375)
.|.. .||.+..-.+.--|..+.- .+-.||.|+-.+.-.-.||..+.+-...|.+.|.. | +++.|
T Consensus 90 ~~~~--~D~~l~~l~~~~~glr~~~~~~~d~fe~lv~~Il~Qq~s~~~a~~~~~rL~~~~G~~~~~~g~~~~~fPtp~~l 167 (295)
T 2jhn_A 90 RFMD--GDEKLRMLKNRFYGFGRAGLMSMSVFEGIAKAIIQQQISFVVAEKLAAKIVGRFGDEVEWNGLKFYGFPTQEAI 167 (295)
T ss_dssp HHHH--TSHHHHHHHHHTTTCCSCCCSCSSHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHSCEEEETTEEEECCCCHHHH
T ss_pred Hhhc--cCHHHHHHHHHcCCCCCCCCCCCCHHHHHHHHHHcCcccHHHHHHHHHHHHHHhCCCCCCCCCccccCCCHHHH
Confidence 4542 5777665555555555543 45689999999999999999999999999999864 5 79999
Q ss_pred hcCCHHHHHHhhcCcchhHHHHHHHHhhHHHHHHHHHhhCCHHHhcccccCCccccCCCCCCCCCCCCCHHHHHHHHHHH
Q 017244 247 AKFTEKKMTSLSANYAIDLSQVRGIVDNSIRILEVKKQFGSFDKYLWGFVNHKPINTQYRSSQKIPVKTSKSEAISKDMV 326 (375)
Q Consensus 247 A~~tEedIerLl~D~gIIR~KI~AVI~NArail~i~~E~GSF~~ylWsFv~~kpi~~~~~~~~~iP~~t~lS~~iSKdLK 326 (375)
+..+++++ ..-|+-++|.+.++.=|++ |+|+.. .++| . +.+-+.|.
T Consensus 168 a~~~~~~L----r~~G~~~rKa~~i~~~A~~--------g~l~~l-----------------~~~~----~-~e~~~~L~ 213 (295)
T 2jhn_A 168 LKAGVEGL----RECGLSRRKAELIVEIAKE--------ENLEEL-----------------KEWG----E-EEAYEYLT 213 (295)
T ss_dssp HHHHHHHH----HHTTCCHHHHHHHHHHHTC--------SSGGGG-----------------GGSC----H-HHHHHHHH
T ss_pred HcCCHHHH----HHcCCCHHHHHHHHHHHHC--------CCHhhh-----------------hcCC----H-HHHHHHHh
Confidence 99988876 3446667788777776655 444321 0111 1 23345564
Q ss_pred HcCCCccchhhHHHHHHH-hc
Q 017244 327 KKGFRFVGPTVIHSFMQA-AG 346 (375)
Q Consensus 327 KrGFkFVGPTtiYSFMQA-vG 346 (375)
.++=|||-|+-.+|.. .|
T Consensus 214 --~lpGIG~~TA~~ill~~lg 232 (295)
T 2jhn_A 214 --SFKGIGRWTAELVLSIALG 232 (295)
T ss_dssp --TSTTCCHHHHHHHHHHTTC
T ss_pred --cCCCcCHHHHHHHHHHccC
Confidence 4889999999887764 56
No 20
>1mpg_A ALKA, 3-methyladenine DNA glycosylase II; DNA repair, base excision, methylation, ALK hydrolase; 1.80A {Escherichia coli} SCOP: a.96.1.3 d.129.1.2 PDB: 1diz_A 1pvs_A* 3cvs_A* 3cvt_A* 3cw7_A* 3cwa_A* 3cws_A* 3cwt_A* 3cwu_A* 3d4v_A* 3ogd_A* 3oh9_A* 3oh6_A*
Probab=85.49 E-value=2.1 Score=40.00 Aligned_cols=120 Identities=16% Similarity=0.148 Sum_probs=84.2
Q ss_pred CccccChHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHhcC----------C-CHHHHhcCCHHHHHHhhcCcchhHHHH
Q 017244 200 GVPVHDDKLLFELLVLTAAQVGSDWTSVLKKRQAFREAFSG----------F-DAEVVAKFTEKKMTSLSANYAIDLSQV 268 (375)
Q Consensus 200 G~Pv~DDr~LFEmL~LEgfQAGLSW~tVLkKReafReAF~g----------F-D~ekVA~~tEedIerLl~D~gIIR~KI 268 (375)
|..+...+-.||.|+-.+.-.-.||..+.+-...|.+.|.. | +++.|+..+++++ ..-|+-+.|.
T Consensus 104 glR~~~~~d~fe~lv~~Il~Qq~s~~~a~~~~~rL~~~~G~~~~~~~~~~~fPtp~~la~~~~~~L----r~~G~~~~ra 179 (282)
T 1mpg_A 104 GLRLPGCVDAFEQGVRAILGQLVSVAMAAKLTARVAQLYGERLDDFPEYICFPTPQRLAAADPQAL----KALGMPLKRA 179 (282)
T ss_dssp TCCCCCCSCHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHCCBCSSCTTCBCCCCHHHHHTCCHHHH----HHTTSCHHHH
T ss_pred CCcCCCCCCHHHHHHHHHHhCcccHHHHHHHHHHHHHHhCCCCCCCCCcccCCCHHHHHcCCHHHH----HHcCCCHHHH
Confidence 33333334589999999999999999999999999998743 4 7999999999988 3456667899
Q ss_pred HHHHhhHHHHHHHHHhhCCHHHhcccccCCccccCCCCCCCCCCCCCHHHHHHHHHHHHcCCCccchhhHHHHHH-Hhcc
Q 017244 269 RGIVDNSIRILEVKKQFGSFDKYLWGFVNHKPINTQYRSSQKIPVKTSKSEAISKDMVKKGFRFVGPTVIHSFMQ-AAGL 347 (375)
Q Consensus 269 ~AVI~NArail~i~~E~GSF~~ylWsFv~~kpi~~~~~~~~~iP~~t~lS~~iSKdLKKrGFkFVGPTtiYSFMQ-AvG~ 347 (375)
+.++.=|+++.+ |.++ ... +. +. +..-+.| ..++-|||-|+-.+|. +.|.
T Consensus 180 ~~i~~~A~~~~~-----~~~~--------~~~-----------~~--~~-~~~~~~L--~~lpGIG~~TA~~ill~~lg~ 230 (282)
T 1mpg_A 180 EALIHLANAALE-----GTLP--------MTI-----------PG--DV-EQAMKTL--QTFPGIGRWTANYFALRGWQA 230 (282)
T ss_dssp HHHHHHHHHHHH-----TCSC--------SSC-----------CS--CH-HHHHHHH--TTSTTCCHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHc-----CCCC--------ccc-----------cC--CH-HHHHHHH--hcCCCcCHHHHHHHHHHhCCC
Confidence 999988888753 1111 000 10 11 1233455 3488899999987765 4552
Q ss_pred -----ccccc
Q 017244 348 -----TNDHL 352 (375)
Q Consensus 348 -----VNDHl 352 (375)
++||.
T Consensus 231 ~d~~pvdd~~ 240 (282)
T 1mpg_A 231 KDVFLPDDYL 240 (282)
T ss_dssp SSCCCTTCHH
T ss_pred CCcCccccHH
Confidence 45665
No 21
>2xhi_A N-glycosylase/DNA lyase; lyase-DNA complex, lyase/DNA complex, separation-OF-function helix-hairpin-helix, DNA repair; HET: 8OG; 1.55A {Homo sapiens} PDB: 1ko9_A 1lwy_A* 1hu0_A* 1lwv_A* 1lww_A* 2noe_A* 2noh_A* 2nol_A* 1n3c_A* 1fn7_A* 2noz_A* 1yqk_A 1yqr_A* 1yql_A* 1yqm_A* 2noi_A 1ebm_A* 1m3q_A* 1m3h_A* 1n39_A* ...
Probab=77.69 E-value=4.8 Score=39.39 Aligned_cols=130 Identities=15% Similarity=0.094 Sum_probs=84.5
Q ss_pred CCchhhhhhhcCCCccccChHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHhcC------------C-CHHHHhcCCHHH
Q 017244 187 SDPIYVAYHDEEWGVPVHDDKLLFELLVLTAAQVGSDWTSVLKKRQAFREAFSG------------F-DAEVVAKFTEKK 253 (375)
Q Consensus 187 ~dply~~YHD~EWG~Pv~DDr~LFEmL~LEgfQAGLSW~tVLkKReafReAF~g------------F-D~ekVA~~tEed 253 (375)
.||.+..-.+.--|..+.. +-.||.|+-.+...-.+|..+.+-...|.+.|.. | +++.|+..+.++
T Consensus 131 ~Dp~l~~l~~~~~glR~~~-~dpfE~LV~~ILsQq~s~~~a~~~~~rL~~~~G~~~~~~~g~~~~~fPtpe~La~~~~ee 209 (360)
T 2xhi_A 131 VDSHFQEVAQKFQGVRLLR-QDPIECLFSFICSSNNNIARITGMVERLCQAFGPRLIQLDDVTYHGFPSLQALAGPEVEA 209 (360)
T ss_dssp HCHHHHHHHHHSTTCCCCC-CCHHHHHHHHHTTTTSCHHHHHHHHHHHHHHHSCEEEEETTEEEECCCCHHHHTSTTHHH
T ss_pred hCHHHHHHHHHcCCCCCCC-CCHHHHHHHHHHhCcCcHHHHHHHHHHHHHHhCCCcccCCCcccccCCCHHHHHcCCHHH
Confidence 3555444444455655544 4689999999999999999999999999998753 3 799999986432
Q ss_pred HHHhhcCcchhHHHHHHHHhhHHHHHHHHHhhCC-HHHhcccccCCccccCCCCCCCCCCCCCHHHHHHHHHHHHcCCCc
Q 017244 254 MTSLSANYAIDLSQVRGIVDNSIRILEVKKQFGS-FDKYLWGFVNHKPINTQYRSSQKIPVKTSKSEAISKDMVKKGFRF 332 (375)
Q Consensus 254 IerLl~D~gIIR~KI~AVI~NArail~i~~E~GS-F~~ylWsFv~~kpi~~~~~~~~~iP~~t~lS~~iSKdLKKrGFkF 332 (375)
.+..-|+ ..|.+.++.=|+++. +++|+ ++ +-.. ..+| . +..-+.|. .++-
T Consensus 210 ---~Lr~~Gl-~~RA~~I~~~A~~i~---~~~~G~~~--L~~l-------------~~~~----~-~~~~~~L~--~LpG 260 (360)
T 2xhi_A 210 ---HLRKLGL-GYRARYVSASARAIL---EEQGGLAW--LQQL-------------RESS----Y-EEAHKALC--ILPG 260 (360)
T ss_dssp ---HHHHTTC-TTHHHHHHHHHHHHH---HTTCTHHH--HHGG-------------GTSC----H-HHHHHHHT--TSTT
T ss_pred ---HHHHcCC-cHHHHHHHHHHHHHH---hccCCccC--HHHH-------------hcCC----H-HHHHHHHH--hCCC
Confidence 3344566 568888888888764 33332 11 1001 0011 1 12334553 5888
Q ss_pred cchhhHHHHHHH-hc
Q 017244 333 VGPTVIHSFMQA-AG 346 (375)
Q Consensus 333 VGPTtiYSFMQA-vG 346 (375)
|||-|+-.+|.. .|
T Consensus 261 IGp~TA~~ill~alg 275 (360)
T 2xhi_A 261 VGTCVADKICLMALD 275 (360)
T ss_dssp CCHHHHHHHHHHHSC
T ss_pred CCHHHHHHHHHHhCC
Confidence 999999877764 35
No 22
>2d3d_A VTS1 protein; RNA binding, SAM domain, SRE hairpin binding, RNA binding protein; 1.60A {Saccharomyces cerevisiae} PDB: 2f8k_A 2fe9_A
Probab=73.91 E-value=5.6 Score=32.31 Aligned_cols=47 Identities=9% Similarity=0.014 Sum_probs=35.9
Q ss_pred HHHHHHhcCCCHHHHhcCCHHHHHHhhcCcchhHHHHHHHHhhHHHH
Q 017244 232 QAFREAFSGFDAEVVAKFTEKKMTSLSANYAIDLSQVRGIVDNSIRI 278 (375)
Q Consensus 232 eafReAF~gFD~ekVA~~tEedIerLl~D~gIIR~KI~AVI~NArai 278 (375)
.-|.+.|.+.+.+.+..+||+|++++=-..-=.|+||...|+.=|..
T Consensus 31 hKY~~~F~~~~~~~l~~LtdedL~~~GVta~GaRrKil~aI~~lr~~ 77 (88)
T 2d3d_A 31 HKYSDALSGTPWIELIYLDDETLEKKGVLALGARRKLLKAFGIVIDY 77 (88)
T ss_dssp GGGHHHHTTSCHHHHTTCCHHHHHHTTCCCHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHhcCCHHHHHHcCHHHHHHcCCccHhHHHHHHHHHHHHHHH
Confidence 56889999999999999999999885322222488999888755443
No 23
>2b6g_A VTS1P; alpha-helix, pentaloop, hairpin, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=68.76 E-value=11 Score=32.09 Aligned_cols=54 Identities=11% Similarity=0.114 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHhcCCCHHHHhcCCHHHHHHhhcCcchhHHHHHHHHhhHHHH
Q 017244 224 WTSVLKKRQAFREAFSGFDAEVVAKFTEKKMTSLSANYAIDLSQVRGIVDNSIRI 278 (375)
Q Consensus 224 W~tVLkKReafReAF~gFD~ekVA~~tEedIerLl~D~gIIR~KI~AVI~NArai 278 (375)
|..-| +-.-|.+.|.+-|.+.+..++|+|++.+=-..-=.|+||...|.--+..
T Consensus 55 WL~sL-rL~KY~~~F~~~~~d~l~~LTeeDL~~lGVta~GaRrKlL~AI~~Lr~~ 108 (119)
T 2b6g_A 55 WLKSL-RLHKYSDALSGTPWIELIYLDDETLEKKGVLALGARRKLLKAFGIVIDY 108 (119)
T ss_dssp HHHHH-TCHHHHHHHTTSCHHHHTTCCHHHHHHHSCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHC-CChhHHHHHccCCHHHHHhcCHHHHHHCCCCccccHHHHHHHHHHHHhh
Confidence 55443 2478999999999999999999999885422222488998888754443
No 24
>1v38_A SAM-domain protein samsn-1; structural genomics, hypothetical protein, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: a.60.1.2
Probab=67.91 E-value=5 Score=30.99 Aligned_cols=43 Identities=12% Similarity=0.316 Sum_probs=30.8
Q ss_pred HHHHHHh--cCCC-HHHHhcCCHHHHHHhhcCcchhHHHHHHHHhh
Q 017244 232 QAFREAF--SGFD-AEVVAKFTEKKMTSLSANYAIDLSQVRGIVDN 274 (375)
Q Consensus 232 eafReAF--~gFD-~ekVA~~tEedIerLl~D~gIIR~KI~AVI~N 274 (375)
+.|...| .||| .+.|+.++++|+.+|=-..-=.|+||.+.|..
T Consensus 25 ~~Y~~~F~~~gy~~~~~~~~lt~~DL~~lGI~~~ghrkkil~ai~~ 70 (78)
T 1v38_A 25 QEYTSTLLLNGYETLDDLKDIKESHLIELNIADPEDRARLLSAAES 70 (78)
T ss_dssp GGGHHHHHHHTCCBHHHHTTCCHHHHHHTTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHhhcCHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 5677777 6894 99999999999987533322257888765543
No 25
>1ucv_A Ephrin type-A receptor 8; receptor oligomerization, developmental regulation, tyrosine kinase, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: a.60.1.2
Probab=64.54 E-value=9 Score=29.55 Aligned_cols=46 Identities=13% Similarity=0.334 Sum_probs=32.1
Q ss_pred HHHHHHh--cCCC-HHHHhcCCHHHHHHhhcCcchhHHHHHHHHhhHHH
Q 017244 232 QAFREAF--SGFD-AEVVAKFTEKKMTSLSANYAIDLSQVRGIVDNSIR 277 (375)
Q Consensus 232 eafReAF--~gFD-~ekVA~~tEedIerLl~D~gIIR~KI~AVI~NAra 277 (375)
+.|.+.| .+|| .+.|..++++|+.+|=-..-=.|+||...|..-+.
T Consensus 20 ~~Y~~~F~~~~~d~~~~l~~lt~~DL~~lGI~~~GhrkkIl~ai~~l~~ 68 (81)
T 1ucv_A 20 GRYRDHFAAGGYSSLGMVLRMNAQDVRALGITLMGHQKKILGSIQTMRA 68 (81)
T ss_dssp GGGHHHHHHTTCCBHHHHTTCCHHHHHHHTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCChHHHHHHcCHHHHHhCCCCChhHHHHHHHHHHHHHH
Confidence 4667777 4688 89999999999976422221157888877766443
No 26
>2es6_A VTS1P; SAM domain, protein structure, gene regulation; NMR {Saccharomyces cerevisiae} PDB: 2ese_A
Probab=64.48 E-value=9.4 Score=31.83 Aligned_cols=46 Identities=9% Similarity=0.019 Sum_probs=34.6
Q ss_pred HHHHHHhcCCCHHHHhcCCHHHHHHhhcCcchhHHHHHHHHhhHHH
Q 017244 232 QAFREAFSGFDAEVVAKFTEKKMTSLSANYAIDLSQVRGIVDNSIR 277 (375)
Q Consensus 232 eafReAF~gFD~ekVA~~tEedIerLl~D~gIIR~KI~AVI~NAra 277 (375)
.-|.+.|.+-+.+.+..+||+|++++=-..-=-|+||...|+.=|.
T Consensus 44 hKY~~~F~~~~~~~l~~LTdedL~~~GVta~GARrKiL~aI~~Lr~ 89 (101)
T 2es6_A 44 HKYSDALSGTPWIELIYLDDETLEKKGVLALGARRKLLKAFGIVID 89 (101)
T ss_dssp CCTHHHHTTSCHHHHTTCCHHHHHHHTCCSHHHHHHHHHHHHHHHH
T ss_pred cchHHHHccCCHHHHHhcCHHHHHHcCCccHhHHHHHHHHHHHHHH
Confidence 4577888999999999999999988532222247899988875443
No 27
>2kso_A Ephrin type-A receptor 2; SAM domain, heterodimer, cell signaling, angiogenesis, apopt ATP-binding, cataract; NMR {Homo sapiens}
Probab=60.48 E-value=19 Score=27.95 Aligned_cols=45 Identities=16% Similarity=0.261 Sum_probs=31.5
Q ss_pred HHHHHHh--cCCC-HHHHhcCCHHHHHHhhcCcchhHHHHHHHHhhHH
Q 017244 232 QAFREAF--SGFD-AEVVAKFTEKKMTSLSANYAIDLSQVRGIVDNSI 276 (375)
Q Consensus 232 eafReAF--~gFD-~ekVA~~tEedIerLl~D~gIIR~KI~AVI~NAr 276 (375)
+.|.+.| .+|| .+.+..++++|+.+|=-..-=.|+||...|..-+
T Consensus 29 ~qY~~~F~~~gid~~~~L~~lt~~DL~~lGI~~~GhRkkIl~ai~~Lr 76 (82)
T 2kso_A 29 QQYTEHFMAAGYTAIEKVVQMTNDDIKRIGVRLPGHQKRIAYSLLGLK 76 (82)
T ss_dssp TTHHHHHHHTTCCSHHHHTTCCHHHHHHHHCCCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCChHHHHHhCCHHHHHHCCCCChhHHHHHHHHHHHHH
Confidence 4566666 4688 9999999999997653322225788887776544
No 28
>1b4f_A EPHB2; SAM domain, EPH receptor, signal transduction, oligomer; 1.95A {Homo sapiens} SCOP: a.60.1.2 PDB: 1f0m_A 1sgg_A
Probab=59.78 E-value=14 Score=28.35 Aligned_cols=47 Identities=15% Similarity=0.293 Sum_probs=32.1
Q ss_pred HHHHHHh--cCC-CHHHHhcCCHHHHHHhhcCcchhHHHHHHHHhhHHHH
Q 017244 232 QAFREAF--SGF-DAEVVAKFTEKKMTSLSANYAIDLSQVRGIVDNSIRI 278 (375)
Q Consensus 232 eafReAF--~gF-D~ekVA~~tEedIerLl~D~gIIR~KI~AVI~NArai 278 (375)
+.|.+.| .+| |.+.+..++++|+.+|=-..--.|+||...|..-+.-
T Consensus 24 ~~Y~~~F~~~~~~~~~~l~~lt~~dL~~lGI~~~GhrkkIl~ai~~l~~~ 73 (82)
T 1b4f_A 24 GQYKESFANAGFTSFDVVSQMMMEDILRVGVTLAGHQKKILNSIQVMRAQ 73 (82)
T ss_dssp GGGHHHHHHTTCCSHHHHTTCCHHHHHHTTCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHhCCHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 3455566 368 7899999999999864322222578998877765543
No 29
>2dl0_A SAM and SH3 domain-containing protein 1; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=57.36 E-value=5.3 Score=32.33 Aligned_cols=43 Identities=7% Similarity=0.160 Sum_probs=30.5
Q ss_pred HHHHHHh--cCCC-HHHHhcCCHHHHHHhhcCcchhHHHHHHHHhh
Q 017244 232 QAFREAF--SGFD-AEVVAKFTEKKMTSLSANYAIDLSQVRGIVDN 274 (375)
Q Consensus 232 eafReAF--~gFD-~ekVA~~tEedIerLl~D~gIIR~KI~AVI~N 274 (375)
+.|.+.| .||| .+.|..++++|+.+|=-..-=.|+||...|..
T Consensus 36 ~qY~~~F~~~g~d~le~l~~lt~~DL~~lGIt~~gHrkkIl~ai~~ 81 (97)
T 2dl0_A 36 PMYAGTLSTAGFSTLSQVPSLSHTCLQEAGITEERHIRKLLSAARL 81 (97)
T ss_dssp GGGHHHHHHHTCCSTTSGGGCCHHHHHHHTCCCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCcHHHHHhcCHHHHHHCCCCCHHHHHHHHHHHHH
Confidence 5677777 4688 79999999999987733322257888766644
No 30
>2eao_A Ephrin type-B receptor 1; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=56.07 E-value=13 Score=29.72 Aligned_cols=44 Identities=16% Similarity=0.398 Sum_probs=29.9
Q ss_pred HHHHHHh--cCCC-HHHHhcCCHHHHHHhhcCcchhHHHHHHHHhhH
Q 017244 232 QAFREAF--SGFD-AEVVAKFTEKKMTSLSANYAIDLSQVRGIVDNS 275 (375)
Q Consensus 232 eafReAF--~gFD-~ekVA~~tEedIerLl~D~gIIR~KI~AVI~NA 275 (375)
+.|.+.| .+|| .+.+..++++|+.+|=-..-=.|+||...|..-
T Consensus 35 ~~Y~~~F~~~~~~~~~~L~~lt~~DL~~lGI~~~GhRkkIl~ai~~l 81 (99)
T 2eao_A 35 VQYRDSFLTAGFTSLQLVTQMTSEDLLRIGITLAGHQKKILNSIHSM 81 (99)
T ss_dssp GGGHHHHHHHTCCBHHHHTTCCHHHHHHHTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCChHHHHhhCCHHHHHHCCCCChhHHHHHHHHHHHH
Confidence 3455555 3688 999999999999875322222578888766553
No 31
>2p5k_A Arginine repressor; DNA-binding domain, winged helix-turn-helix (WHTH), DNA binding protein; 1.00A {Bacillus subtilis} SCOP: a.4.5.3 PDB: 2p5l_C*
Probab=55.04 E-value=13 Score=26.02 Aligned_cols=31 Identities=10% Similarity=0.225 Sum_probs=26.3
Q ss_pred HHHHHHHHHHcCCCccchhhHHHHHHHhcccc
Q 017244 318 SEAISKDMVKKGFRFVGPTVIHSFMQAAGLTN 349 (375)
Q Consensus 318 S~~iSKdLKKrGFkFVGPTtiYSFMQAvG~VN 349 (375)
.+.|+..|+++|+ -|+..|+|-.|...|++-
T Consensus 22 ~~el~~~l~~~~~-~vs~~Tv~R~L~~lg~v~ 52 (64)
T 2p5k_A 22 QDELVDMLKQDGY-KVTQATVSRDIKELHLVK 52 (64)
T ss_dssp HHHHHHHHHHTTC-CCCHHHHHHHHHHHTCEE
T ss_pred HHHHHHHHHHhCC-CcCHHHHHHHHHHcCCEE
Confidence 3578889999986 589999999999999883
No 32
>2e8n_A Ephrin type-A receptor 2; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=52.79 E-value=11 Score=29.56 Aligned_cols=46 Identities=15% Similarity=0.229 Sum_probs=31.6
Q ss_pred HHHHHHhc--CCC-HHHHhcCCHHHHHHhhcCcchhHHHHHHHHhhHHH
Q 017244 232 QAFREAFS--GFD-AEVVAKFTEKKMTSLSANYAIDLSQVRGIVDNSIR 277 (375)
Q Consensus 232 eafReAF~--gFD-~ekVA~~tEedIerLl~D~gIIR~KI~AVI~NAra 277 (375)
+.|.+.|. +|| .+.+..++++|+.+|=-..-=.|+||...|..-+.
T Consensus 25 ~~Y~~~F~~~~~~~~~~l~~lt~~dL~~lGI~~~GhRkkIl~ai~~l~~ 73 (88)
T 2e8n_A 25 QQYTEHFMAAGYTAIEKVVQMTNDDVKRIGVRLPGHQKRIAYSLLGLKD 73 (88)
T ss_dssp GGGHHHHHHHTCSSHHHHTTSCTTHHHHTTCCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCChHHHHHhCCHHHHHHCCCCChhHHHHHHHHHHHHHH
Confidence 45556663 688 99999999999876432222257898877766443
No 33
>1b0x_A Protein (EPHA4 receptor tyrosine kinase); protein interaction module, dimerization domain, transferase; 2.00A {Mus musculus} SCOP: a.60.1.2
Probab=51.21 E-value=23 Score=27.96 Aligned_cols=46 Identities=11% Similarity=0.337 Sum_probs=31.4
Q ss_pred HHHHHHhc--CC-CHHHHhcCCHHHHHHhhcCcchhHHHHHHHHhhHHH
Q 017244 232 QAFREAFS--GF-DAEVVAKFTEKKMTSLSANYAIDLSQVRGIVDNSIR 277 (375)
Q Consensus 232 eafReAF~--gF-D~ekVA~~tEedIerLl~D~gIIR~KI~AVI~NAra 277 (375)
+.|.+.|. +| |.+.|..++++|+.+|=-..-=.|.||...|..-+.
T Consensus 39 ~~Y~~~F~~~g~~~~~~l~~lt~~DL~~lGI~~~GhrkkIl~ai~~L~~ 87 (94)
T 1b0x_A 39 DRYKDNFTAAGYTTLEAVVHMSQDDLARIGITAITHQNKILSSVQAMRT 87 (94)
T ss_dssp GGGHHHHHHTTCCSHHHHTTCCHHHHHHHTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHhhCCHHHHHHCCCCChhHHHHHHHHHHHHHH
Confidence 55666664 57 789999999999876432221157898877766543
No 34
>2k4p_A Phosphatidylinositol-3,4,5-trisphosphate 5- phosphatase 2; helix bundle, signaling protein, actin-binding, alternative splicing, cell adhesion; NMR {Homo sapiens} PDB: 2kso_B
Probab=50.97 E-value=19 Score=28.58 Aligned_cols=42 Identities=14% Similarity=0.313 Sum_probs=29.0
Q ss_pred HHHHHHhc--CCC-HHHHhcCCHHHHHHhhcCcchhHHHHHHHHh
Q 017244 232 QAFREAFS--GFD-AEVVAKFTEKKMTSLSANYAIDLSQVRGIVD 273 (375)
Q Consensus 232 eafReAF~--gFD-~ekVA~~tEedIerLl~D~gIIR~KI~AVI~ 273 (375)
+.|.+.|. +|| .+.|..++++|+.+|=-..-=.|+||...|.
T Consensus 39 ~qY~~~F~~~g~~~le~l~~lt~~DL~~lGIt~~GHRkkIL~aI~ 83 (86)
T 2k4p_A 39 ERYEEGLVHNGWDDLEFLSDITEEDLEEAGVQDPAHKRLLLDTLQ 83 (86)
T ss_dssp GGGHHHHHTTTCCCHHHHTTCCHHHHHHTTCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCChHHHHHhCCHHHHHHCCCCCHHHHHHHHHHHH
Confidence 56777774 574 8999999999987643222224778876654
No 35
>2qkq_A Ephrin type-B receptor 4; ATP-binding, glycoprotein, kinase, membrane, nucleotide- binding, phosphorylation, repeat, signal, transferase; 2.10A {Homo sapiens}
Probab=49.74 E-value=20 Score=27.54 Aligned_cols=45 Identities=18% Similarity=0.365 Sum_probs=31.2
Q ss_pred HHHHHHhc--CC-CHHHHhcCCHHHHHHhhcCcchhHHHHHHHHhhHH
Q 017244 232 QAFREAFS--GF-DAEVVAKFTEKKMTSLSANYAIDLSQVRGIVDNSI 276 (375)
Q Consensus 232 eafReAF~--gF-D~ekVA~~tEedIerLl~D~gIIR~KI~AVI~NAr 276 (375)
+.|.+.|. +| |.+.+..++++|+.+|=-..--.|+||...|..-+
T Consensus 28 ~~Y~~~F~~~~~~~~~~l~~lt~~dL~~lGI~~~GhrkkIl~ai~~l~ 75 (83)
T 2qkq_A 28 GRYEESFAAAGFGSFELVSQISAEDLLRIGVTLAGHQKKILASVQHMK 75 (83)
T ss_dssp GGGHHHHHHTTCCSHHHHTTCCHHHHHHHTCCCHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHcCCCcHHHHhhCCHHHHHHCCCCCHHHHHHHHHHHHHHH
Confidence 45777774 54 78999999999998852222225789987776644
No 36
>1x40_A ARAP2; ASAP-related protein2, GTPase activity, signal transduction, SAM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.60.1.2
Probab=49.70 E-value=12 Score=29.68 Aligned_cols=44 Identities=9% Similarity=0.142 Sum_probs=29.0
Q ss_pred HHHHHHhc--CCC-HHHHhcCCHHHHHHhhcCcchhHHHHHHHHhhH
Q 017244 232 QAFREAFS--GFD-AEVVAKFTEKKMTSLSANYAIDLSQVRGIVDNS 275 (375)
Q Consensus 232 eafReAF~--gFD-~ekVA~~tEedIerLl~D~gIIR~KI~AVI~NA 275 (375)
+.|.+.|. +|| .+.|..++++|+.+|=-..-=.|+||...|..-
T Consensus 28 ~qY~~~F~~~g~~~~~~l~~lt~~DL~~lGI~~~GHrkkIl~ai~~L 74 (91)
T 1x40_A 28 EQYLLHFHESGFTTVKDCAAINDSLLQKIGISPTGHRRRILKQLQII 74 (91)
T ss_dssp GGGHHHHHHHTCCBSGGGGGCCHHHHHHHTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCcHHHHhhcCHHHHHHCCCCCHhHHHHHHHHHHHH
Confidence 44566663 574 789999999999875221111578888766553
No 37
>3h8m_A Ephrin type-A receptor 7; SAM domain, kinase,structural genomics, structural genomics consortium, SGC, alternative splicing, ATP-binding; 2.10A {Homo sapiens}
Probab=48.09 E-value=27 Score=27.73 Aligned_cols=39 Identities=23% Similarity=0.538 Sum_probs=29.2
Q ss_pred HHHHHHh--cCCC-HHHHhcCCHHHHHHhhcCcch----hHHHHHHHHhh
Q 017244 232 QAFREAF--SGFD-AEVVAKFTEKKMTSLSANYAI----DLSQVRGIVDN 274 (375)
Q Consensus 232 eafReAF--~gFD-~ekVA~~tEedIerLl~D~gI----IR~KI~AVI~N 274 (375)
+.|.+.| .+|| .+.|+.++++|+.+| || .|+||-..|..
T Consensus 38 ~qY~~~F~~~g~d~~e~l~~lt~~DL~~l----GIt~~GHRkkIL~ai~~ 83 (90)
T 3h8m_A 38 ERYKDNFTAAGYNSLESVARMTIEDVMSL----GITLVGHQKKIMSSIQT 83 (90)
T ss_dssp GGGHHHHHHTTCCSHHHHHTCCHHHHHHT----TCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCChHHHHhhCCHHHHHHC----CCCCHHHHHHHHHHHHH
Confidence 4556666 5688 999999999998775 55 46788777654
No 38
>1eh2_A EPS15; calcium binding, signaling domain, NPF binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP: a.39.1.6 PDB: 2jxc_A 1f8h_A 1ff1_A
Probab=46.44 E-value=7 Score=31.32 Aligned_cols=45 Identities=16% Similarity=0.332 Sum_probs=32.1
Q ss_pred hcccHHHHHHHHHHHHHHhcCCCHHHHhcCCHHHHHHhhcCcchhH
Q 017244 220 VGSDWTSVLKKRQAFREAFSGFDAEVVAKFTEKKMTSLSANYAIDL 265 (375)
Q Consensus 220 AGLSW~tVLkKReafReAF~gFD~ekVA~~tEedIerLl~D~gIIR 265 (375)
.|..|..--..+..|+++|.-||. .=-..+-+++..+|...++-.
T Consensus 3 ~~~~w~ls~~e~~~~~~~F~~~D~-~dG~Is~~el~~~l~~~gl~~ 47 (106)
T 1eh2_A 3 WGSPWAVKPEDKAKYDAIFDSLSP-VNGFLSGDKVKPVLLNSKLPV 47 (106)
T ss_dssp ---CCSSCHHHHHHHHHHHTTSCC-SSSCCBHHHHHHHHHTTTCCH
T ss_pred cCCCCCCCHHHHHHHHHHHHHhCC-CCCeEcHHHHHHHHHHcCCCH
Confidence 456677556678889999999997 555678888888887766543
No 39
>3kka_C Ephrin type-A receptor 2; ATP-binding, kinase, nucleotide-binding, transferase, tyrosine-protein kinase, signal, sterIle alpha motif; 2.40A {Homo sapiens} SCOP: a.60.1.0
Probab=46.04 E-value=25 Score=27.73 Aligned_cols=43 Identities=16% Similarity=0.305 Sum_probs=28.8
Q ss_pred HHHHHHh--cCCC-HHHHhcCCHHHHHHhhcCcchhHHHHHHHHhh
Q 017244 232 QAFREAF--SGFD-AEVVAKFTEKKMTSLSANYAIDLSQVRGIVDN 274 (375)
Q Consensus 232 eafReAF--~gFD-~ekVA~~tEedIerLl~D~gIIR~KI~AVI~N 274 (375)
+.|.+.| .+|| .+.|..++++|+.+|=-..-=.|+||-..|..
T Consensus 34 ~qY~~~F~~~g~d~le~l~~lt~~DL~~LGIt~~GHRkkIL~ai~~ 79 (86)
T 3kka_C 34 QQYTEHFMAAGYTAIEKVVQMTNDDIKRIGVRLPGHQKRIAYSLLG 79 (86)
T ss_dssp GGGHHHHHHTTCCSHHHHHTCCHHHHHHTTCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCChHHHHHhCCHHHHHHCCCCCHHHHHHHHHHHHH
Confidence 4566666 4688 89999999999986521111146788776643
No 40
>2kg5_A ARF-GAP, RHO-GAP domain, ANK repeat and PH domain-containing protein 3; SAM domain, helix bundle, cell membrane, cell projection, cytoplasm; NMR {Homo sapiens}
Probab=44.35 E-value=22 Score=28.80 Aligned_cols=43 Identities=9% Similarity=0.276 Sum_probs=29.4
Q ss_pred HHHHHHh--cCCC-HHHHhcCCHHHHHHhhcCcchhHHHHHHHHhh
Q 017244 232 QAFREAF--SGFD-AEVVAKFTEKKMTSLSANYAIDLSQVRGIVDN 274 (375)
Q Consensus 232 eafReAF--~gFD-~ekVA~~tEedIerLl~D~gIIR~KI~AVI~N 274 (375)
+.|.+.| .+|| .+.+..++++|+.+|=-..-=.|.||...|..
T Consensus 39 ~qY~~~F~~~gid~~~~L~~Lt~eDLkeLGIt~~GhRkkIL~aI~~ 84 (100)
T 2kg5_A 39 EQYADTFRRHGLATAGAARGLGHEELKQLGISATGHRKRILRLLQT 84 (100)
T ss_dssp GGGHHHHHHTTCCBHHHHTTCCHHHHHHHTCCCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCChHHHHHhcCHHHHHHCCCCChhHHHHHHHHHHH
Confidence 4555566 4788 89999999999887532221147788766654
No 41
>3k1r_B Usher syndrome type-1G protein; protein-protein complex, alternative splicing, coiled coil, deafness, hearing, non-syndromic deafness, polymorphism; 2.30A {Homo sapiens}
Probab=43.69 E-value=44 Score=25.46 Aligned_cols=44 Identities=16% Similarity=0.243 Sum_probs=30.9
Q ss_pred HHHHHHHhcCCCHHHHhcCCHHHHHHhhcCcchhHHHHHHHHhhHHH
Q 017244 231 RQAFREAFSGFDAEVVAKFTEKKMTSLSANYAIDLSQVRGIVDNSIR 277 (375)
Q Consensus 231 ReafReAF~gFD~ekVA~~tEedIerLl~D~gIIR~KI~AVI~NAra 277 (375)
.+.|.+ .++|.+.+..++++|+.+|=-..| .|.||-..|..=+.
T Consensus 18 ~~~F~~--~~id~e~l~~lt~~DL~~lGI~~G-~RkkIl~ai~~~~~ 61 (74)
T 3k1r_B 18 AALLRQ--EKIDLEALMLCSDLDLRSISVPLG-PREKILGAVRRRRQ 61 (74)
T ss_dssp HHHHHH--TTCCHHHHTTCCHHHHHHTTCCHH-HHHHHHHHHHHHHH
T ss_pred HHHHHH--cCcCHHHHhHCCHHHHHHcCCCcc-hHHHHHHHHHHHHH
Confidence 355665 568999999999999876643311 57898877754433
No 42
>3sei_A Caskin-1; SAM domain, protein-protein interaction, signaling protein; 2.40A {Homo sapiens} PDB: 3sen_A
Probab=43.01 E-value=24 Score=30.27 Aligned_cols=43 Identities=14% Similarity=0.353 Sum_probs=30.5
Q ss_pred HHHHHHhc--CCCHHHHhcCCHHHHHHhhcCcchhHHHHHHHHhh
Q 017244 232 QAFREAFS--GFDAEVVAKFTEKKMTSLSANYAIDLSQVRGIVDN 274 (375)
Q Consensus 232 eafReAF~--gFD~ekVA~~tEedIerLl~D~gIIR~KI~AVI~N 274 (375)
+.|.+.|. +||.+.+..++++|+.+|=-..--.|+||...|..
T Consensus 23 ~~Y~~~F~~~g~d~~~l~~lt~~DL~~lGIt~~gHrkkil~ai~~ 67 (149)
T 3sei_A 23 QLYAPNFISAGYDLPTISRMTPEDLTAIGVTKPGHRKKIAAEISG 67 (149)
T ss_dssp GGGHHHHHHTTCCHHHHTTCCHHHHHHTTCCSHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCHHHHccCCHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 45666664 89999999999999986533222357888776654
No 43
>1fi6_A EH domain protein REPS1; EPS15 homology domain, EF hand, calcium, RAS signal transduction, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: a.39.1.6
Probab=41.98 E-value=4.8 Score=30.57 Aligned_cols=43 Identities=9% Similarity=0.203 Sum_probs=30.8
Q ss_pred HHHHHHHHHhcCCCHHHHhcCCHHHHHHhhcCcchhHHHHHHH
Q 017244 229 KKRQAFREAFSGFDAEVVAKFTEKKMTSLSANYAIDLSQVRGI 271 (375)
Q Consensus 229 kKReafReAF~gFD~ekVA~~tEedIerLl~D~gIIR~KI~AV 271 (375)
..+..|+++|.-||.+.=-.++-+++..++..-++-...++.+
T Consensus 6 ~~~~~~~~~F~~~D~d~dG~I~~~el~~~l~~~g~~~~~~~~i 48 (92)
T 1fi6_A 6 EQRQYYVNQFKTIQPDLNGFIPGSAAKEFFTKSKLPILELSHI 48 (92)
T ss_dssp HHHHHHHHHHTTTCCSTTCEEEHHHHHHHHHHHSSCHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHcCCCHHHHHHH
Confidence 4567899999999988777778888888886655433333333
No 44
>3hil_A Ephrin type-A receptor 1; ATP-binding, kinase, nucleotide-binding, transferase, tyrosine-protein kinase, signal, sterIle alpha motif; 2.00A {Homo sapiens} PDB: 3kka_A
Probab=41.88 E-value=20 Score=28.01 Aligned_cols=38 Identities=21% Similarity=0.424 Sum_probs=27.6
Q ss_pred HHHHHHh--cCCC-HHHHhcCCHHHHHHhhcCcch----hHHHHHHHHh
Q 017244 232 QAFREAF--SGFD-AEVVAKFTEKKMTSLSANYAI----DLSQVRGIVD 273 (375)
Q Consensus 232 eafReAF--~gFD-~ekVA~~tEedIerLl~D~gI----IR~KI~AVI~ 273 (375)
+.|.+.| .+|| .+.|+.++++|+.+| || .|+||-..|.
T Consensus 36 ~qY~~~F~~~g~~s~e~l~~lt~~DL~~l----GIt~~GHRkkIL~aiq 80 (82)
T 3hil_A 36 KRYILHFHSAGLDTMECVLELTAEDLTQM----GITLPGHQKRILCSIQ 80 (82)
T ss_dssp GGGHHHHHHTTCCSGGGGTTCCHHHHHHT----TCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCChHHHHhcCCHHHHHHC----CCCCHHHHHHHHHHHH
Confidence 4455555 4688 999999999998765 45 3678776553
No 45
>3sei_A Caskin-1; SAM domain, protein-protein interaction, signaling protein; 2.40A {Homo sapiens} PDB: 3sen_A
Probab=41.11 E-value=45 Score=28.52 Aligned_cols=45 Identities=7% Similarity=0.177 Sum_probs=30.8
Q ss_pred HHHHHh--cCCC-HHHHhcCCHHHHHHhhcCcchhHHHHHHHHhhHHH
Q 017244 233 AFREAF--SGFD-AEVVAKFTEKKMTSLSANYAIDLSQVRGIVDNSIR 277 (375)
Q Consensus 233 afReAF--~gFD-~ekVA~~tEedIerLl~D~gIIR~KI~AVI~NAra 277 (375)
.|.+.| .||| .+.|..++++|+.+|=-..--.|.||-..|..-+.
T Consensus 93 qY~~~F~~~g~d~~~~l~~lt~~dL~~lGI~~~gHr~kIl~ai~~l~~ 140 (149)
T 3sei_A 93 QYYKVLVDNGYENIDFITDITWEDLQEIGITKLGHQKKLMLAVRKLAE 140 (149)
T ss_dssp GGHHHHHHTTCCSHHHHTTCCHHHHHHHTCCCHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHCCCchHHHHhhCCHHHHHHCCCCCHHHHHHHHHHHHHHHH
Confidence 455555 4798 89999999999976533333357888877754443
No 46
>2ean_A Connector enhancer of kinase suppressor of RAS 2; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=40.78 E-value=47 Score=25.21 Aligned_cols=44 Identities=11% Similarity=0.159 Sum_probs=30.6
Q ss_pred HHHHHHhcCCCHHHHhcCCHHHHHHhhcCcchhHHHHHHHHhhHHH
Q 017244 232 QAFREAFSGFDAEVVAKFTEKKMTSLSANYAIDLSQVRGIVDNSIR 277 (375)
Q Consensus 232 eafReAF~gFD~ekVA~~tEedIerLl~D~gIIR~KI~AVI~NAra 277 (375)
+.|++ .+.|-+.+..++++|+.+|--..--.|.||...|..-+.
T Consensus 32 ~~F~~--~~I~G~~Ll~Lt~~dL~~LGI~~~ghr~~il~~I~~L~~ 75 (83)
T 2ean_A 32 KNFER--EKISGDQLLRITHQELEDLGVSRIGHQELILEAVDLLCA 75 (83)
T ss_dssp HHHHH--HTCCHHHHTTCCHHHHHHHTCCCSHHHHHHHHHHHHHHH
T ss_pred HHHHH--CCCCHHHHhhCCHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 44444 467889999999999987544433367888877766443
No 47
>2gle_A Neurabin-1; SAM domain, scaffold, protein protein interaction, protein binding; NMR {Rattus norvegicus}
Probab=37.98 E-value=77 Score=23.34 Aligned_cols=46 Identities=15% Similarity=0.244 Sum_probs=30.3
Q ss_pred HHHHHHhc--CCCHHHHhcCCHHHHHHhhcCcchhHHHHHHHHhhHHH
Q 017244 232 QAFREAFS--GFDAEVVAKFTEKKMTSLSANYAIDLSQVRGIVDNSIR 277 (375)
Q Consensus 232 eafReAF~--gFD~ekVA~~tEedIerLl~D~gIIR~KI~AVI~NAra 277 (375)
+.|.+.|. +.|-+.+..++++|+..|=-..--.|.||...|..-+.
T Consensus 22 ~~y~~~F~~~~i~g~~Ll~l~~~dL~~lGI~~~g~r~kil~~i~~L~~ 69 (74)
T 2gle_A 22 DQYVSEFSAQNISGEQLLQLDGNKLKALGMTSSQDRALVKKKLKEMKM 69 (74)
T ss_dssp HHHHHHHTTTTCCHHHHHTCCHHHHHTTTCCCHHHHHHHHHHHHSHHH
T ss_pred HHHHHHHHHcCCCHHHHhhCCHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence 45666774 57889999999999754322211247788877766543
No 48
>3bs5_B Connector enhancer of kinase suppressor of RAS 2; sterIle alpha motif, SAM domain, SAM domain dimer, SAM domain complex, cytoplasm, membrane; 2.00A {Homo sapiens}
Probab=35.27 E-value=59 Score=24.38 Aligned_cols=43 Identities=12% Similarity=0.167 Sum_probs=29.2
Q ss_pred HHHHHHhcCCCHHHHhcCCHHHHHHhhcCcchhHHHHHHHHhhHH
Q 017244 232 QAFREAFSGFDAEVVAKFTEKKMTSLSANYAIDLSQVRGIVDNSI 276 (375)
Q Consensus 232 eafReAF~gFD~ekVA~~tEedIerLl~D~gIIR~KI~AVI~NAr 276 (375)
+.|++ .++|-+.+..++++|+.+|--..--.|.||...|..-+
T Consensus 28 ~~F~~--~~i~G~~Ll~L~~~dL~~lGI~~~ghr~~il~~I~~L~ 70 (80)
T 3bs5_B 28 KNFER--EKISGDQLLRITHQELEDLGVSRIGHQELILEAVDLLC 70 (80)
T ss_dssp HHHHH--HTCCHHHHHTCCHHHHHHTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHH--cCCCHHHHHHCCHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 44444 56888999999999997743333335778876665543
No 49
>1c07_A Protein (epidermal growth factor receptor pathway substrate 15); calcium binding, signaling domain, NPF binding, FW binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP: a.39.1.6
Probab=33.10 E-value=5.3 Score=30.61 Aligned_cols=44 Identities=9% Similarity=0.122 Sum_probs=32.6
Q ss_pred HHHHHHHHHhcCCCHHHHhcCCHHHHHHhhcCcchhHHHHHHHH
Q 017244 229 KKRQAFREAFSGFDAEVVAKFTEKKMTSLSANYAIDLSQVRGIV 272 (375)
Q Consensus 229 kKReafReAF~gFD~ekVA~~tEedIerLl~D~gIIR~KI~AVI 272 (375)
..++.|+++|.-||.+.=-.++-+++..++..-++-...++.++
T Consensus 7 ~~~~~~~~~F~~~D~d~dG~I~~~el~~~l~~~g~~~~~~~~i~ 50 (95)
T 1c07_A 7 AEKAKYDEIFLKTDKDMDGFVSGLEVREIFLKTGLPSTLLAHIW 50 (95)
T ss_dssp HHHHHHHHHHHHHCTTCSSEECHHHHHHHHHTTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHcCCCHHHHHHHH
Confidence 45678999999999887777888999888877665443444433
No 50
>4h62_V Mediator of RNA polymerase II transcription subun; mediator complex, nucleus; HET: MES; 3.00A {Saccharomyces cerevisiae}
Probab=32.02 E-value=15 Score=24.32 Aligned_cols=15 Identities=40% Similarity=0.667 Sum_probs=9.6
Q ss_pred HhcCCHHHHHHhhcC
Q 017244 246 VAKFTEKKMTSLSAN 260 (375)
Q Consensus 246 VA~~tEedIerLl~D 260 (375)
|..|+|++||+|+.|
T Consensus 6 vtrfdekqieelldn 20 (31)
T 4h62_V 6 VTRFDEKQIEELLDN 20 (31)
T ss_dssp ----CHHHHHHHHHH
T ss_pred cccccHHHHHHHHHH
Confidence 678999999999865
No 51
>2kgr_A Intersectin-1; structure, alternative splicing, calcium, cell junction, cell projection, coiled coil, endocytosis, membrane, phosphoprotein; NMR {Homo sapiens}
Probab=29.40 E-value=11 Score=29.94 Aligned_cols=49 Identities=16% Similarity=0.342 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHhcCCCHHHHhcCCHHHHHHhhcCcchhHHHHHHHH
Q 017244 224 WTSVLKKRQAFREAFSGFDAEVVAKFTEKKMTSLSANYAIDLSQVRGIV 272 (375)
Q Consensus 224 W~tVLkKReafReAF~gFD~ekVA~~tEedIerLl~D~gIIR~KI~AVI 272 (375)
|..--..++.|+++|.-||.+.=-.++-+++..++...++....|+.++
T Consensus 6 w~ls~~~~~~l~~~F~~~D~d~dG~I~~~El~~~l~~~~~~~~~~~~i~ 54 (111)
T 2kgr_A 6 WAVPQSSRLKYRQLFNSHDKTMSGHLTGPQARTILMQSSLPQAQLASIW 54 (111)
T ss_dssp SSSCHHHHHHHHHHHHTTSCSSCCEEEHHHHHHHHHTTCCCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHhCCCCHHHHHHHH
Confidence 4433445678999999999877667788888888875554444444433
No 52
>1oxj_A RNA-binding protein smaug; SAM domain, PHAT domain; 1.80A {Drosophila melanogaster} SCOP: a.60.1.2 a.118.1.13
Probab=28.77 E-value=74 Score=28.75 Aligned_cols=43 Identities=16% Similarity=0.152 Sum_probs=32.9
Q ss_pred HHHHHHhcCCCHHHHhcCCHHHHHHhhcCcchhHHHHHHHHhhH
Q 017244 232 QAFREAFSGFDAEVVAKFTEKKMTSLSANYAIDLSQVRGIVDNS 275 (375)
Q Consensus 232 eafReAF~gFD~ekVA~~tEedIerLl~D~gIIR~KI~AVI~NA 275 (375)
.-|.+.|.+.+.+.+..+||+|++++=-.. =-|+||...|+.=
T Consensus 20 hKY~~~F~~~~~e~~~~LTdedL~~~GVT~-GARrKIL~aIq~L 62 (173)
T 1oxj_A 20 HKYIELFKNMTYEEMLLITEDFLQSVGVTK-GASHKLALCIDKL 62 (173)
T ss_dssp GGGGGGGTTCCHHHHTTCCHHHHHHTTCCH-HHHHHHHHHHHHH
T ss_pred chhHHHHccCCHHHHHhcCHHHHHHCCCch-HHHHHHHHHHHHH
Confidence 568889999999999999999999862221 2477877766543
No 53
>2znm_A Thiol:disulfide interchange protein DSBA; thioredoxin fold, DSBA-like, oxidoreductase; 2.30A {Neisseria meningitidis serogroup B} PDB: 3dvx_A
Probab=28.56 E-value=1.1e+02 Score=25.28 Aligned_cols=90 Identities=10% Similarity=0.109 Sum_probs=42.1
Q ss_pred CCCCCCCCCCCchhhhhhhcC-----C-Cccc--cChHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHhcCCCHHHHhcC
Q 017244 178 KRCSFITPNSDPIYVAYHDEE-----W-GVPV--HDDKLLFELLVLTAAQVGSDWTSVLKKRQAFREAFSGFDAEVVAKF 249 (375)
Q Consensus 178 ~RC~W~~~~~dply~~YHD~E-----W-G~Pv--~DDr~LFEmL~LEgfQAGLSW~tVLkKReafReAF~gFD~ekVA~~ 249 (375)
..|+||.. -.+.+..+-++- | ..|+ +++-.....+.+.+.+.|.-|..... -|+..|.. .-.-.
T Consensus 32 ~~Cp~C~~-~~~~l~~l~~~~~~~v~~~~~p~~~~~~s~~aa~a~~aa~~~~~~~~~~~~---lf~~~~~~----~~~~~ 103 (195)
T 2znm_A 32 YFCVHCHH-FDPLLLKLGKALPSDAYLRTEHVVWQPEMLGLARMAAAVNLSGLKYQANPA---VFKAVYEQ----KIRLE 103 (195)
T ss_dssp TTSCCTTS-SCHHHHHHHHHSCTTEEEEEEECCCSGGGHHHHHHHHHHHHHTCHHHHHHH---HHHHHHHC----SSCTT
T ss_pred CCChhHHH-HhHHHHHHHHHCCCceEEEEeccccCcccHHHHHHHHHHHHcCcHHHHHHH---HHHHHHHh----CCCCC
Confidence 46999963 455444433221 1 1133 33333333333444445666655422 23332311 01123
Q ss_pred CHHHHHHhhcCc-chhHHHHHHHHhhH
Q 017244 250 TEKKMTSLSANY-AIDLSQVRGIVDNS 275 (375)
Q Consensus 250 tEedIerLl~D~-gIIR~KI~AVI~NA 275 (375)
+++.|.+++.+- ||...++.+.+++.
T Consensus 104 ~~~~l~~~a~~~~Gld~~~~~~~~~~~ 130 (195)
T 2znm_A 104 NRSVAGKWALSQKGFDGKKLMRAYDSP 130 (195)
T ss_dssp SHHHHHHHHHTCSSSCHHHHHHHHTSH
T ss_pred CHHHHHHHHHHcCCCCHHHHHHHhcCH
Confidence 566777777777 77665555554443
No 54
>2lc0_A Putative uncharacterized protein TB39.8; FHAA, kinase substrate, protein binding; NMR {Mycobacterium tuberculosis}
Probab=27.96 E-value=20 Score=30.54 Aligned_cols=25 Identities=16% Similarity=0.368 Sum_probs=21.4
Q ss_pred CHHHHHHHHHHHHcCCCccchhhHH
Q 017244 315 TSKSEAISKDMVKKGFRFVGPTVIH 339 (375)
Q Consensus 315 t~lS~~iSKdLKKrGFkFVGPTtiY 339 (375)
.++++.+.+....+||.|+||++|.
T Consensus 83 ~el~~~l~~~a~~qgy~~~G~v~V~ 107 (132)
T 2lc0_A 83 TGFARDLADYIQEQGWQTYGDVVVR 107 (132)
T ss_dssp HHHHHHHHHHHHHHTCBCSSCCEEE
T ss_pred HHHHHHHHHHHHHCCCeecCCeEEE
Confidence 4677888888899999999999875
No 55
>2jq6_A EH domain-containing protein 1; metal binding protein; NMR {Homo sapiens} PDB: 2kff_A 2kfg_A 2kfh_A 2ksp_A
Probab=27.74 E-value=9.8 Score=32.50 Aligned_cols=42 Identities=17% Similarity=0.255 Sum_probs=29.2
Q ss_pred ccHHHHHHHHHHHHHHhcCCCHHHHhcCCHHHHHHhhcCcchhH
Q 017244 222 SDWTSVLKKRQAFREAFSGFDAEVVAKFTEKKMTSLSANYAIDL 265 (375)
Q Consensus 222 LSW~tVLkKReafReAF~gFD~ekVA~~tEedIerLl~D~gIIR 265 (375)
..|.+ -..++.|+++|.-|| +.=-.++-+++..+|...++-.
T Consensus 42 ~~W~~-~~e~~~l~~~F~~fD-d~dG~Is~~El~~~l~~~gl~~ 83 (139)
T 2jq6_A 42 VEWVV-GKDKPTYDEIFYTLS-PVNGKITGANAKKEMVKSKLPN 83 (139)
T ss_dssp CCCGG-GGTHHHHHHHHHHSC-CSSSEEEHHHHHHHHHHTTCCH
T ss_pred CCCCC-hHHHHHHHHHHHHhC-CCCCeECHHHHHHHHHHhCcCH
Confidence 45654 456777899999998 6655667777777776655543
No 56
>1k94_A Grancalcin; penta-EF-hand protein, calcium binding protein, metal binding protein; 1.70A {Homo sapiens} SCOP: a.39.1.8 PDB: 1k95_A 1f4q_A 1f4o_A
Probab=27.51 E-value=32 Score=27.44 Aligned_cols=47 Identities=13% Similarity=0.172 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHhcCCCHHHHhcCCHHHHHHhhcCcchh--HHHHHHHHh
Q 017244 227 VLKKRQAFREAFSGFDAEVVAKFTEKKMTSLSANYAID--LSQVRGIVD 273 (375)
Q Consensus 227 VLkKReafReAF~gFD~ekVA~~tEedIerLl~D~gII--R~KI~AVI~ 273 (375)
++.+.+.++++|..||.+.=-.++.+++..++..-+.. ...++.++.
T Consensus 65 ~~~~~~~~~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~ 113 (165)
T 1k94_A 65 LWAALNAWKENFMTVDQDGSGTVEHHELRQAIGLMGYRLSPQTLTTIVK 113 (165)
T ss_dssp HHHHHHHHHHHHHHHCTTCCSBCCHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCCceECHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 33445789999999999888889999999888765542 344544443
No 57
>2f3n_A SH3 and multiple ankyrin repeat domains 3; postsynaptic density, SAM domain, shank, scaffolding protein, structural protein; 2.10A {Rattus norvegicus} SCOP: a.60.1.2 PDB: 2f44_A
Probab=27.30 E-value=54 Score=24.63 Aligned_cols=45 Identities=9% Similarity=0.155 Sum_probs=28.8
Q ss_pred HHHHHh--cCCCHHHHhcCCHHHHHHhhcCcchhHHHHHHHHhhHHH
Q 017244 233 AFREAF--SGFDAEVVAKFTEKKMTSLSANYAIDLSQVRGIVDNSIR 277 (375)
Q Consensus 233 afReAF--~gFD~ekVA~~tEedIerLl~D~gIIR~KI~AVI~NAra 277 (375)
.|.+.| .++|-..+..++++|+.+|=-..--.|.||...|..-+.
T Consensus 21 ~Y~~~F~~~~idg~~Ll~Lt~~dL~~lGI~~~Ghr~kIl~aI~~l~~ 67 (76)
T 2f3n_A 21 EHRDRFEDHEIEGAHLPALTKEDFVELGVTRVGHRENIERALRQLDG 67 (76)
T ss_dssp GGHHHHHHTTCCGGGGGGCCHHHHHHTTCCCHHHHHHHHHHHHTC--
T ss_pred HHHHHHHHcCCCHHHHccCCHHHHHHcCCCChhHHHHHHHHHHHHHH
Confidence 355555 467888999999999964432222247888877766443
No 58
>2p4g_A Hypothetical protein; pyrimidine reductase-like protein, structural genomics, JOIN for structural genomics, JCSG; 2.30A {Corynebacterium diphtheriae}
Probab=26.88 E-value=43 Score=30.75 Aligned_cols=30 Identities=13% Similarity=0.284 Sum_probs=25.1
Q ss_pred HHHHHHHHcCCC----ccchhhHHHHHHHhccccc
Q 017244 320 AISKDMVKKGFR----FVGPTVIHSFMQAAGLTND 350 (375)
Q Consensus 320 ~iSKdLKKrGFk----FVGPTtiYSFMQAvG~VND 350 (375)
.+-+.|+++|.+ ..|++++.+||++ |+|+.
T Consensus 178 ~~l~~L~~~g~~~vlvEGG~~l~~sfL~a-gLVDE 211 (270)
T 2p4g_A 178 IAFDALHARRLKKISIEGGPSVYRQALSL-GIVDR 211 (270)
T ss_dssp HHHHHHHTTTCCEEEEEECHHHHHHHHHH-TCCCE
T ss_pred HHHHHHHHCCCCEEEEecCHHHHHHHHHC-CCCeE
Confidence 456789999998 5699999999875 98875
No 59
>1qjt_A EH1, epidermal growth factor receptor substrate substrate 15, EPS15; EH domain, EF-hand, solution structure, S100 protein; NMR {Mus musculus} SCOP: a.39.1.6
Probab=26.13 E-value=18 Score=28.13 Aligned_cols=42 Identities=5% Similarity=0.064 Sum_probs=31.4
Q ss_pred HHHHHHHHhcCCCHHHHhcCCHHHHHHhhcCcchhHHHHHHH
Q 017244 230 KRQAFREAFSGFDAEVVAKFTEKKMTSLSANYAIDLSQVRGI 271 (375)
Q Consensus 230 KReafReAF~gFD~ekVA~~tEedIerLl~D~gIIR~KI~AV 271 (375)
.++.|+++|.-||.+.=-..+-+++..+|...++-..-+..+
T Consensus 9 ~~~~~~~~F~~~D~d~dG~Is~~el~~~l~~~~l~~~~l~~i 50 (99)
T 1qjt_A 9 GNPVYEKYYRQVEAGNTGRVLALDAAAFLKKSGLPDLILGKI 50 (99)
T ss_dssp TCTHHHHHHHHHCCTTSSCCCSHHHHHHHHTSSSCHHHHHHH
T ss_pred hHHHHHHHHHHHCCCCCCcCCHHHHHHHHHHcCCCHHHHHHH
Confidence 456799999999998877788889988888776543333333
No 60
>2yvq_A Carbamoyl-phosphate synthase; conserved hypothetical protein, structural genomics, NPPSFA; 1.98A {Homo sapiens}
Probab=25.38 E-value=43 Score=28.13 Aligned_cols=31 Identities=10% Similarity=0.397 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHcCCCccchhhHHHHHHHhcc
Q 017244 317 KSEAISKDMVKKGFRFVGPTVIHSFMQAAGL 347 (375)
Q Consensus 317 lS~~iSKdLKKrGFkFVGPTtiYSFMQAvG~ 347 (375)
....+++.|...||+++..-..+.||+..|+
T Consensus 38 ~l~~~a~~l~~lGf~i~AT~GTa~~L~~~Gi 68 (143)
T 2yvq_A 38 RFLGVAEQLHNEGFKLFATEATSDWLNANNV 68 (143)
T ss_dssp HHHHHHHHHHTTTCEEEEEHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHCCCEEEECchHHHHHHHcCC
Confidence 3456899999999999977777899998884
No 61
>2lmr_A ODIN, ankyrin repeat and SAM domain-containing protein; signaling protein; NMR {Homo sapiens}
Probab=23.95 E-value=48 Score=26.94 Aligned_cols=43 Identities=12% Similarity=0.268 Sum_probs=28.9
Q ss_pred HHHHHHhc--CCC-HHHHh--cCCHHHHHHhhcCcchhHHHHHHHHhh
Q 017244 232 QAFREAFS--GFD-AEVVA--KFTEKKMTSLSANYAIDLSQVRGIVDN 274 (375)
Q Consensus 232 eafReAF~--gFD-~ekVA--~~tEedIerLl~D~gIIR~KI~AVI~N 274 (375)
+.|.+.|. +|| .+.|+ .++++|+.+|=-..-=.|+||...|..
T Consensus 42 ~qY~~~F~~~g~d~~e~l~~~~Lt~eDL~eLGIt~~GHRkkIL~aI~~ 89 (101)
T 2lmr_A 42 QQYESKLLLNGFDDVHFLGSNVMEEQDLRDIGISDPQHRRKLLQAARS 89 (101)
T ss_dssp GGGHHHHHHTTCCCTTSTTTSCCCHHHHHHHTCCCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCChHHHHhhccCCHHHHHHCCCCCHHHHHHHHHHHHH
Confidence 56777774 576 67888 899999876532221257888776654
No 62
>3h3m_A Flagellar protein FLIT; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, flagellum; 2.50A {Bordetella bronchiseptica}
Probab=23.69 E-value=1.4e+02 Score=25.16 Aligned_cols=80 Identities=16% Similarity=0.199 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHhhcccHHHHHHHHHHHHHHhcCCCH-HHHhcCCHHH-------HHHhhcCcchhH-------HHHHHHH
Q 017244 208 LLFELLVLTAAQVGSDWTSVLKKRQAFREAFSGFDA-EVVAKFTEKK-------MTSLSANYAIDL-------SQVRGIV 272 (375)
Q Consensus 208 ~LFEmL~LEgfQAGLSW~tVLkKReafReAF~gFD~-ekVA~~tEed-------IerLl~D~gIIR-------~KI~AVI 272 (375)
.|.+-+ |+..++| .|..+..-...|..+-+..-- +.-+.+++++ |.+|+.|..-|| ..+...|
T Consensus 29 ~lS~~M-L~aA~~g-dWD~Lv~lE~~y~~lVe~L~~~~~~~~l~~~~r~~k~~lL~~IL~nDaeIR~Ll~prl~eL~~li 106 (126)
T 3h3m_A 29 NLTSRM-LAAANAS-NWDLVLNHGQEYVCLVERLRELEPGEPLDEAARGMKFDLLVRILENDAAVRDLALPQLARLSDLL 106 (126)
T ss_dssp HHHHHH-HHHHHTT-CHHHHHHHHHHHHHHHHHHHHHCSCSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHH-HHHHHHC-cHHHHHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 345555 8888888 699999998888876332100 0012344443 455666665554 2566666
Q ss_pred hhHHHHHHHHHhhCCHH
Q 017244 273 DNSIRILEVKKQFGSFD 289 (375)
Q Consensus 273 ~NArail~i~~E~GSF~ 289 (375)
..++.=..+..-||.|+
T Consensus 107 ~~~~rq~~l~~aYg~~~ 123 (126)
T 3h3m_A 107 GRMKRQQSLLATYSGKA 123 (126)
T ss_dssp -----------------
T ss_pred HHhhHhhHHHHHHhccc
Confidence 66666556666666554
No 63
>3bs7_A Protein aveugle; sterIle alpha motif (SAM) domain, cytoplasm, membrane, sensory transduction, vision, signaling protein; 1.90A {Drosophila melanogaster}
Probab=23.60 E-value=1.7e+02 Score=21.58 Aligned_cols=45 Identities=7% Similarity=0.166 Sum_probs=30.2
Q ss_pred HHHHHh--cCCCHHHHhcCCHHHHHHhhcCcchhHHHHHHHHhhHHH
Q 017244 233 AFREAF--SGFDAEVVAKFTEKKMTSLSANYAIDLSQVRGIVDNSIR 277 (375)
Q Consensus 233 afReAF--~gFD~ekVA~~tEedIerLl~D~gIIR~KI~AVI~NAra 277 (375)
.|.+.| ++.|-+.+..++++|+.+|--..--.|.||...|..=|.
T Consensus 24 ~y~~~F~~~~I~G~~Ll~L~~~dL~~lGI~~~g~r~~il~~I~~Lr~ 70 (78)
T 3bs7_A 24 QYEQLFAQHDITGRALLRITDSSLQRMGVTDNRDREAIWREIVKQRL 70 (78)
T ss_dssp GGHHHHHHTTCCHHHHTTCCHHHHHHHTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCHHHHhhCCHHHHhHcCCCCHHHHHHHHHHHHHHHh
Confidence 355555 467889999999999987533333356787766655443
No 64
>3bq7_A Diacylglycerol kinase delta; SAM domain, polymerization domain, alternative splicing, cytoplasm, membrane, metal-binding, phorbol-ester binding; 2.90A {Homo sapiens}
Probab=23.52 E-value=93 Score=23.60 Aligned_cols=44 Identities=7% Similarity=0.212 Sum_probs=29.6
Q ss_pred HHHHh--cCCCHHHHhcCCHHHHHHhhcCcchhHHHHHHHHhhHHH
Q 017244 234 FREAF--SGFDAEVVAKFTEKKMTSLSANYAIDLSQVRGIVDNSIR 277 (375)
Q Consensus 234 fReAF--~gFD~ekVA~~tEedIerLl~D~gIIR~KI~AVI~NAra 277 (375)
|.+.| .++|-..+..++++|+.+|=-..--.|.||...|..-+.
T Consensus 27 Y~~~F~~~~idg~~Ll~Lt~~dL~~lGI~~~ghr~kIl~aI~~L~~ 72 (81)
T 3bq7_A 27 YKDIFTRHDIRGSGLLHLERRDLKDLGVTKVGHMKRILCGIKELSR 72 (81)
T ss_dssp GHHHHHHTTCCHHHHTTCCHHHHHHTTCCCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCCHHHHCcCCHHHHhHcCCCCHHHHHHHHHHHHHHHH
Confidence 44555 457888999999999887432222257888877765443
No 65
>2kiv_A Ankyrin repeat and sterIle alpha motif domain- containing protein 1B; SAM domain, tandem, signaling protein, alternative splicing, ANK repeat; NMR {Homo sapiens}
Probab=23.17 E-value=48 Score=28.08 Aligned_cols=42 Identities=7% Similarity=0.248 Sum_probs=29.1
Q ss_pred HHHHHh--cCCCH-HHHh--cCCHHHHHHhhcCcchhHHHHHHHHhh
Q 017244 233 AFREAF--SGFDA-EVVA--KFTEKKMTSLSANYAIDLSQVRGIVDN 274 (375)
Q Consensus 233 afReAF--~gFD~-ekVA--~~tEedIerLl~D~gIIR~KI~AVI~N 274 (375)
.|.+.| .|||- +.|+ .++++|+.+|=-..--.|.||...|..
T Consensus 28 ~Y~~~F~~~g~d~~~~l~~~~lt~~DL~~lGI~~~ghRkkil~ai~~ 74 (148)
T 2kiv_A 28 QYENHLMANGFDNVQAMGSNVMEDQDLLEIGILNSGHRQRILQAIQL 74 (148)
T ss_dssp TSHHHHHHTTTTBGGGGTSSCCCHHHHHHHCCSSTTSHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHhhhccCCHHHHHHCCCCCHHHHHHHHHHHHH
Confidence 555666 56876 6676 999999986644444468898766654
No 66
>1kdx_B CREB; complex (transcription activator/CO-activator), protein- protein interaction, phosphoserine recognition; HET: SEP; NMR {Rattus norvegicus}
Probab=22.96 E-value=11 Score=24.99 Aligned_cols=18 Identities=17% Similarity=0.578 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHhcCCC
Q 017244 225 TSVLKKRQAFREAFSGFD 242 (375)
Q Consensus 225 ~tVLkKReafReAF~gFD 242 (375)
..||.+|+.||..|.+|.
T Consensus 7 r~iL~rrpSYrkIlndls 24 (28)
T 1kdx_B 7 REILSRRPSYRKILNDLS 24 (28)
T ss_dssp HHHHTTSTHHHHHHHHHH
T ss_pred hhhhhcCchHHHHHHhhc
Confidence 468999999999998763
No 67
>2azn_A HTP reductase, putative 5-amino-6-(5-phosphoribosylamino)uracil; oxidoreductase; HET: MA5 NAP EPE; 2.70A {Methanocaldococcus jannaschii} SCOP: c.71.1.2
Probab=21.98 E-value=61 Score=28.39 Aligned_cols=30 Identities=20% Similarity=0.363 Sum_probs=24.5
Q ss_pred HHHHHHHHcCCC----ccchhhHHHHHHHhccccc
Q 017244 320 AISKDMVKKGFR----FVGPTVIHSFMQAAGLTND 350 (375)
Q Consensus 320 ~iSKdLKKrGFk----FVGPTtiYSFMQAvG~VND 350 (375)
.+-+.|+++|.+ ..|++++.+||+ .|+|+.
T Consensus 133 ~~l~~L~~~g~~~ilveGG~~l~~s~l~-~gLvDe 166 (219)
T 2azn_A 133 KLMDILYDKGIKSILLEGGGTLNWGMFK-EGLVDE 166 (219)
T ss_dssp HHHHHHHHTTCCEEEEEECHHHHHHHHH-TTCCCE
T ss_pred HHHHHHHHcCCCEEEEeeCHHHHHHHHH-CCCCcE
Confidence 456889999998 359999999987 588875
No 68
>2k9i_A Plasmid PRN1, complete sequence; plasmid COPY control protein, ribbon helix helix protein, DNA binding protein; NMR {Sulfolobus islandicus} PDB: 3ft7_A
Probab=20.82 E-value=1.6e+02 Score=19.85 Aligned_cols=31 Identities=16% Similarity=0.153 Sum_probs=24.0
Q ss_pred hHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHh
Q 017244 206 DKLLFELLVLTAAQVGSDWTSVLKKRQAFREAF 238 (375)
Q Consensus 206 Dr~LFEmL~LEgfQAGLSW~tVLkKReafReAF 238 (375)
|..|++.|-.-+-+.|+|...++. +++++.+
T Consensus 17 ~~el~~~l~~~a~~~g~s~s~~ir--~ai~~~l 47 (55)
T 2k9i_A 17 PQEWHDRLMEIAKEKNLTLSDVCR--LAIKEYL 47 (55)
T ss_dssp CHHHHHHHHHHHHHHTCCHHHHHH--HHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCHHHHHH--HHHHHHH
Confidence 678899998888899999998873 4555543
Done!