Query 017245
Match_columns 375
No_of_seqs 221 out of 1578
Neff 7.0
Searched_HMMs 46136
Date Fri Mar 29 06:52:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017245.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017245hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02845 Branched-chain-amino- 100.0 1.1E-71 2.3E-76 548.2 38.3 332 40-374 2-336 (336)
2 PRK12479 branched-chain amino 100.0 4.4E-60 9.6E-65 459.3 33.4 278 82-365 6-289 (299)
3 PRK08320 branched-chain amino 100.0 3.1E-59 6.6E-64 451.0 33.2 274 82-361 5-284 (288)
4 TIGR01122 ilvE_I branched-chai 100.0 3.3E-59 7.2E-64 452.8 33.6 274 83-363 1-286 (298)
5 cd01558 D-AAT_like D-Alanine a 100.0 4.3E-59 9.3E-64 445.6 31.3 266 83-356 1-270 (270)
6 PRK06680 D-amino acid aminotra 100.0 7.1E-59 1.5E-63 448.2 32.9 273 82-362 5-283 (286)
7 PRK12400 D-amino acid aminotra 100.0 3.8E-58 8.2E-63 444.0 33.0 272 82-362 7-284 (290)
8 PRK06606 branched-chain amino 100.0 5.4E-58 1.2E-62 446.0 33.5 273 82-361 9-293 (306)
9 PRK07650 4-amino-4-deoxychoris 100.0 5.4E-58 1.2E-62 441.3 32.6 274 82-362 2-277 (283)
10 PRK13356 aminotransferase; Pro 100.0 1.7E-57 3.7E-62 438.6 33.6 271 82-363 9-285 (286)
11 TIGR01121 D_amino_aminoT D-ami 100.0 1.9E-57 4.1E-62 436.1 33.0 269 82-359 2-274 (276)
12 PRK07544 branched-chain amino 100.0 6.7E-57 1.4E-61 435.6 31.0 270 82-361 11-287 (292)
13 PRK07849 4-amino-4-deoxychoris 100.0 1.1E-55 2.4E-60 427.2 33.6 264 82-362 9-290 (292)
14 cd00449 PLPDE_IV PyridoxaL 5'- 100.0 2.7E-55 5.9E-60 415.5 31.8 251 100-356 1-256 (256)
15 PRK06092 4-amino-4-deoxychoris 100.0 3.3E-55 7.2E-60 418.6 32.1 260 82-357 2-266 (268)
16 cd01559 ADCL_like ADCL_like: 4 100.0 1.8E-55 3.9E-60 416.2 29.9 247 100-356 1-249 (249)
17 TIGR01123 ilvE_II branched-cha 100.0 5.7E-55 1.2E-59 426.1 31.7 270 83-361 1-300 (313)
18 TIGR03461 pabC_Proteo aminodeo 100.0 9.1E-55 2E-59 414.0 31.9 255 83-353 1-260 (261)
19 cd01557 BCAT_beta_family BCAT_ 100.0 1.5E-54 3.2E-59 416.8 31.8 256 96-360 2-277 (279)
20 PLN03117 Branched-chain-amino- 100.0 2.3E-54 5E-59 428.0 32.4 280 82-372 45-351 (355)
21 PRK13357 branched-chain amino 100.0 6.1E-54 1.3E-58 425.4 32.7 271 83-363 42-343 (356)
22 PLN02782 Branched-chain amino 100.0 5.7E-54 1.2E-58 430.1 32.4 274 82-365 95-392 (403)
23 PRK09266 hypothetical protein; 100.0 9.4E-53 2E-57 401.5 30.6 256 82-358 5-260 (266)
24 PLN02259 branched-chain-amino- 100.0 1.7E-52 3.7E-57 417.6 30.8 272 82-365 81-377 (388)
25 COG0115 IlvE Branched-chain am 100.0 1E-50 2.2E-55 391.1 32.5 271 82-363 4-282 (284)
26 PLN02883 Branched-chain amino 100.0 7.9E-51 1.7E-55 404.8 31.5 269 83-365 78-373 (384)
27 KOG0975 Branched chain aminotr 100.0 4.3E-48 9.2E-53 372.6 25.3 285 59-365 55-371 (379)
28 PF01063 Aminotran_4: Aminotra 100.0 6.6E-43 1.4E-47 325.3 20.3 224 121-356 1-231 (231)
29 PRK07546 hypothetical protein; 100.0 1.5E-40 3.2E-45 306.9 26.1 202 107-335 4-209 (209)
30 PRK07101 hypothetical protein; 100.0 5.6E-33 1.2E-37 252.3 19.7 183 108-329 4-187 (187)
31 PF08222 HTH_CodY: CodY helix- 28.0 87 0.0019 23.1 3.3 26 281-309 14-39 (61)
32 PF14347 DUF4399: Domain of un 26.6 54 0.0012 26.0 2.3 39 80-118 23-62 (87)
33 TIGR03042 PS_II_psbQ_bact phot 22.7 76 0.0016 27.7 2.6 14 30-43 12-25 (142)
34 COG3958 Transketolase, C-termi 22.3 86 0.0019 30.7 3.2 100 243-353 169-268 (312)
35 PRK10474 putative PTS system f 20.4 3.2E+02 0.007 21.4 5.7 50 287-340 5-61 (88)
36 TIGR02530 flg_new flagellar op 20.2 2E+02 0.0044 23.4 4.4 33 233-275 43-77 (96)
37 PRK13669 hypothetical protein; 20.1 86 0.0019 24.5 2.2 35 28-66 34-70 (78)
No 1
>PLN02845 Branched-chain-amino-acid aminotransferase-like protein
Probab=100.00 E-value=1.1e-71 Score=548.21 Aligned_cols=332 Identities=62% Similarity=1.040 Sum_probs=303.4
Q ss_pred cccccCCCccccceecChHHHHHHHHhccCCcccccccccccceeCCEecCCCCceeCcCCcccccCceeEEeEEEeCCe
Q 017245 40 SVEAENGSEFKAHMFSSSSELLQKLQEKWSSVKKKPYPAMYSSIFGGIILDPAMMVIPIDDHMVHRGHGVFDTAIILNGY 119 (375)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~y~~~~~g~~~~~~~~~lp~~D~~~~yGdgvFET~rv~~G~ 119 (375)
++.|+||++.-.|++ ++++++|||+++|..++.+++.|||++|+||++++++++.||++|||++||||+||||++++|+
T Consensus 2 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nG~~v~~~~a~i~~~Drgl~~GdGvFETirv~~G~ 80 (336)
T PLN02845 2 PSVVPGSRTKVPPLL-SAAEMIQRLQSKWSDAKKQNFGAMYSSVVGGITTDPAAMVIPLDDHMVHRGHGVFDTATIRDGH 80 (336)
T ss_pred CCCCCCCCCcCCccc-cHHHHHHHHHhhhccccccceeeeeeEEECCEEccHHHCcccccccceeecceEEEEEEEECCE
Confidence 457889888888999 9999999999999999899999999999999999999999999999999999999999999999
Q ss_pred ecCHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhcCCCCeeEEEEEecCCCCcccCCCCCCCceEEEEEEeCCCC
Q 017245 120 LYELDVHLDRFLRSAVSARISSPFPRSTLRSILVQLTAASQCKKGTLRFWLTAGPGDFLLSPAGCPTSAFYAVVIDDDFS 199 (375)
Q Consensus 120 i~~ld~Hl~RL~~Sa~~l~i~~p~~~e~l~~~I~~li~~~~~~~g~iR~~vs~G~g~~~~~p~~~~~~~~~~~~~~~p~~ 199 (375)
+++|++|++||.+||+.|+|+.|++.+++++.+.+++++++..++.||+++++|.|++++.+..++.+.+++.+.+.++.
T Consensus 81 ~~~le~Hl~RL~~Sa~~L~i~~p~~~~~l~~~i~~~i~~~~~~~~~irl~vtrG~g~~~~~~~~~~~~~~~i~~~~~~~~ 160 (336)
T PLN02845 81 LYELDAHLDRFLRSAAKAKIPLPFDRATLRRILLQTVAASGCRNGSLRYWLSAGPGGFSLSPSGCSEPAFYAVVIEDTYA 160 (336)
T ss_pred EcCHHHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHHhcCCCcEEEEEEEEeCCCCCCCCCCCCCCCEEEEEEcccccc
Confidence 99999999999999999999988999999999999999988889999999999988777766656677787776554433
Q ss_pred c-CCCCeEEEEeeeecCCCCCCCCcccCChHHHHHHHHHHhcCCcEEEEEcCCCcEeeeCCceEEEEEeCCEEEecCCCC
Q 017245 200 Q-CKEGVKVITSSIPMKPRLFATVKNVNYLPNVLAKMEAEDKGASASIWIDEDGYVAEGPNVNVAFITHDKELVLPFFDK 278 (375)
Q Consensus 200 ~-~~~Gv~l~~s~~~~~~~~~~~iKt~nyl~~vla~~eA~~~G~deaL~ld~~G~V~E~s~sNvffv~k~g~l~TP~~~~ 278 (375)
. ..+|+++.++++++.++.++++|+.||+.+++++++|+++|+||+||+|++|+|+|++++|+||+.++|+|+||++++
T Consensus 161 ~~~~~gv~l~~~~~~~~~~~~~~~Kt~nyl~~vla~~eA~~~G~deaLlln~~G~V~Egt~sNiF~v~~~~~l~TP~l~~ 240 (336)
T PLN02845 161 QDRPEGVKVVTSSVPIKPPQFATVKSVNYLPNALSQMEAEERGAFAGIWLDEEGFVAEGPNMNVAFLTNDGELVLPPFDK 240 (336)
T ss_pred ccccCCeEEEEeeeeecCCccccchhhhhHHHHHHHHHHHHcCCCEEEEECCCCcEEEcCcceEEEEEECCEEEeCCCCC
Confidence 3 268999988887776666789999999999999999999999999999999999999999997766799999999988
Q ss_pred ccccHHHHHHHHHhhhhhhCC--CcceEEEEEcCHHHHhccceEEEEcCccceEEEEEECCeecCCCChhHHHHHHHHHH
Q 017245 279 ILSGCTAKRLLELAPKLVEQG--RLKSVKTANLTVDEAKGAAEMMYVGSTLPLLAITVWDEQPIGDGNVGELTMALSDLL 356 (375)
Q Consensus 279 iL~GiTR~~vlela~~l~~~G--~~~~V~er~i~~~eL~~adEvfl~nS~~gv~PV~~id~~~i~~g~~gpvt~~L~~~~ 356 (375)
+|+||||+.|+++|+++.+.| + +|+|+.++++||.+|||+|+|||++||+||++|||+.+++|++||++++|+++|
T Consensus 241 iL~GItR~~vlela~~~~~~G~~i--~V~E~~i~~~eL~~AdEvFltnS~~gv~PV~~id~~~~~~g~~gp~t~~L~~~~ 318 (336)
T PLN02845 241 ILSGCTARRVLELAPRLVSPGDLR--GVKQRKISVEEAKAADEMMLIGSGVPVLPIVSWDGQPIGDGKVGPITLALHDLL 318 (336)
T ss_pred cCccHHHHHHHHHHHhhhccCCce--EEEEEecCHHHHhcCCEEEEecCcccEEEEEEECCEECCCCCCCHHHHHHHHHH
Confidence 999999999999999763336 6 899999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCCCCCcccccCC
Q 017245 357 WEDMVAGPETQRHCVSYD 374 (375)
Q Consensus 357 ~~~i~~g~~~~~~~v~y~ 374 (375)
++....++.+.++|++|.
T Consensus 319 ~~~~~~~~~~~~~~~~~~ 336 (336)
T PLN02845 319 LDDMRSGPPGVRTPVPYG 336 (336)
T ss_pred HHHHhcCCCccceeccCC
Confidence 988888878888999995
No 2
>PRK12479 branched-chain amino acid aminotransferase; Provisional
Probab=100.00 E-value=4.4e-60 Score=459.33 Aligned_cols=278 Identities=24% Similarity=0.402 Sum_probs=252.5
Q ss_pred ceeCCEecCCCCceeCcCCcccccCceeEEeEEEeCCeecCHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhcCC
Q 017245 82 SIFGGIILDPAMMVIPIDDHMVHRGHGVFDTAIILNGYLYELDVHLDRFLRSAVSARISSPFPRSTLRSILVQLTAASQC 161 (375)
Q Consensus 82 ~~~~g~~~~~~~~~lp~~D~~~~yGdgvFET~rv~~G~i~~ld~Hl~RL~~Sa~~l~i~~p~~~e~l~~~I~~li~~~~~ 161 (375)
.|+||.++++.++.||++||||+|||||||||++++|++++|++|++||.+||++|+|+.|++.+++++.+.++++.++.
T Consensus 6 ~~~nG~~~~~~~~~i~~~drg~~~GdgvFEt~r~~~g~~~~l~~Hl~RL~~Sa~~l~i~~p~~~~~l~~~i~~~i~~~~~ 85 (299)
T PRK12479 6 IYMNGEFVEKEKAVVSVYDHGFLYGDGVFEGIRSYGGNVFCLKEHVKRLYESAKSILLTIPLTVDEMEEAVLQTLQKNEY 85 (299)
T ss_pred EEECCEEeEHHHCccccccchhheeeeEEEEEEEECCEecCHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCC
Confidence 58899999999999999999999999999999999999999999999999999999999899999999999999999888
Q ss_pred CCeeEEEEEecCCCCcccCCCCCCCceEEEEEEeCCCCc---CCCCeEEEEeeeecCC-CCC-CCCcccCChHHHHHHHH
Q 017245 162 KKGTLRFWLTAGPGDFLLSPAGCPTSAFYAVVIDDDFSQ---CKEGVKVITSSIPMKP-RLF-ATVKNVNYLPNVLAKME 236 (375)
Q Consensus 162 ~~g~iR~~vs~G~g~~~~~p~~~~~~~~~~~~~~~p~~~---~~~Gv~l~~s~~~~~~-~~~-~~iKt~nyl~~vla~~e 236 (375)
.+++||+++++|.|++++.+..+.++.+++.+.+.+..+ +.+|+++.++.+++.. +.+ +.+|+.||+.+++++++
T Consensus 86 ~~~~ir~~v~rg~g~~g~~~~~~~~~~~~i~~~~~~~~~~~~~~~gv~~~~~~~~r~~~~~~~~~~K~~nyl~~vla~~e 165 (299)
T PRK12479 86 ADAYIRLIVSRGKGDLGLDPRSCVKPSVIIIAEQLKLFPQEFYDNGLSVVSVASRRNTPDALDPRIKSMNYLNNVLVKIE 165 (299)
T ss_pred CCeEEEEEEEecCCCCCCCCccCCCceEEEEEEEcccCChhHHhCCeEEEEEeEeccCCCccCccchhhhhHHHHHHHHH
Confidence 889999999999888888776666778887777654221 3679998888777643 333 68999999999999999
Q ss_pred HHhcCCcEEEEEcCCCcEeeeCCceEEEEEeCCEEEecCCC-CccccHHHHHHHHHhhhhhhCCCcceEEEEEcCHHHHh
Q 017245 237 AEDKGASASIWIDEDGYVAEGPNVNVAFITHDKELVLPFFD-KILSGCTAKRLLELAPKLVEQGRLKSVKTANLTVDEAK 315 (375)
Q Consensus 237 A~~~G~deaL~ld~~G~V~E~s~sNvffv~k~g~l~TP~~~-~iL~GiTR~~vlela~~l~~~G~~~~V~er~i~~~eL~ 315 (375)
|+++|+||+||+|++|+|+|++++|+ |++++|+|+||+++ ++|+||||+.++++++++ |+ +|+|+.++++||.
T Consensus 166 a~~~g~de~l~ld~~g~v~E~s~sNl-f~v~~~~l~TP~l~~giL~GItR~~il~~~~~~---g~--~v~e~~i~~~~L~ 239 (299)
T PRK12479 166 AAQAGVLEALMLNQQGYVCEGSGDNV-FVVKDGKVLTPPSYLGALEGITRNSVIELCERL---SI--PCEERPFTRHDVY 239 (299)
T ss_pred HHHcCCCEEEEEcCCCcEEECCceEE-EEEECCEEEeCCCcCCCCcCHHHHHHHHHHHHc---CC--eEEEEeCCHHHHH
Confidence 99999999999999999999999999 55689999999996 799999999999999998 97 9999999999999
Q ss_pred ccceEEEEcCccceEEEEEECCeecCCCChhHHHHHHHHHHHHHhhcCCC
Q 017245 316 GAAEMMYVGSTLPLLAITVWDEQPIGDGNVGELTMALSDLLWEDMVAGPE 365 (375)
Q Consensus 316 ~adEvfl~nS~~gv~PV~~id~~~i~~g~~gpvt~~L~~~~~~~i~~g~~ 365 (375)
+|||+|+|||++||+||++||++.+++|++||++++|+++|++.+...+.
T Consensus 240 ~adevfltnS~~gi~PV~~id~~~~~~~~~g~~~~~l~~~~~~~~~~~~~ 289 (299)
T PRK12479 240 VADEVFLTGTAAELIPVVKVDSREIGDGKPGSVTKQLTEEFKKLTRERGV 289 (299)
T ss_pred hCCeeeeecCcccEEEEEEECCEEcCCCCcCHHHHHHHHHHHHHHhhcCC
Confidence 99999999999999999999999999999999999999999866655443
No 3
>PRK08320 branched-chain amino acid aminotransferase; Reviewed
Probab=100.00 E-value=3.1e-59 Score=450.96 Aligned_cols=274 Identities=28% Similarity=0.462 Sum_probs=248.8
Q ss_pred ceeCCEecCCCCceeCcCCcccccCceeEEeEEEeCCeecCHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhcCC
Q 017245 82 SIFGGIILDPAMMVIPIDDHMVHRGHGVFDTAIILNGYLYELDVHLDRFLRSAVSARISSPFPRSTLRSILVQLTAASQC 161 (375)
Q Consensus 82 ~~~~g~~~~~~~~~lp~~D~~~~yGdgvFET~rv~~G~i~~ld~Hl~RL~~Sa~~l~i~~p~~~e~l~~~I~~li~~~~~ 161 (375)
.|+||+++++.++.++++|||++||||||||+++++|++++|++|++||.+||+.|+|++|++.+++++.+.+++++++.
T Consensus 5 ~~~nG~~~~~~~~~i~~~drg~~~GdgvFEt~~v~~g~~~~l~~Hl~RL~~Sa~~l~i~~p~~~~~l~~~i~~~i~~~~~ 84 (288)
T PRK08320 5 IYLNGEFVPKEEAKVSVFDHGFLYGDGVFEGIRAYNGRVFRLKEHIDRLYDSAKAIMLEIPLSKEEMTEIVLETLRKNNL 84 (288)
T ss_pred EEECCEEEEHHHCcccccchhhhhcceEEEEEEEECCEeecHHHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHHhcCC
Confidence 68999999999999999999999999999999999999999999999999999999999899999999999999999888
Q ss_pred CCeeEEEEEecCCCCcccCCCCCCCceEEEEEEeCCCCc---CCCCeEEEEeeeecCC-C-CCCCCcccCChHHHHHHHH
Q 017245 162 KKGTLRFWLTAGPGDFLLSPAGCPTSAFYAVVIDDDFSQ---CKEGVKVITSSIPMKP-R-LFATVKNVNYLPNVLAKME 236 (375)
Q Consensus 162 ~~g~iR~~vs~G~g~~~~~p~~~~~~~~~~~~~~~p~~~---~~~Gv~l~~s~~~~~~-~-~~~~iKt~nyl~~vla~~e 236 (375)
.+++||+++++|.|++++.+.+++.+.+++++.+.+... +.+|+++.++++.+.+ + ..+++|+.||+.+++++++
T Consensus 85 ~~~~iri~v~rg~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~r~~~~~~~~~~K~~nyl~~v~a~~~ 164 (288)
T PRK08320 85 RDAYIRLVVSRGVGDLGLDPRKCPKPTVVCIAEPIGLYPGELYEKGLKVITVSTRRNRPDALSPQVKSLNYLNNILAKIE 164 (288)
T ss_pred CCEEEEEEEEECCCcCCCCcccCCCceEEEEEEEcCcCChhHHhcCeEEEEEeeeccCCCCcCccchhhhhHHHHHHHHH
Confidence 899999999999888888777666777776665533211 3589999888777653 2 3368999999999999999
Q ss_pred HHhcCCcEEEEEcCCCcEeeeCCceEEEEEeCCEEEecCCC-CccccHHHHHHHHHhhhhhhCCCcceEEEEEcCHHHHh
Q 017245 237 AEDKGASASIWIDEDGYVAEGPNVNVAFITHDKELVLPFFD-KILSGCTAKRLLELAPKLVEQGRLKSVKTANLTVDEAK 315 (375)
Q Consensus 237 A~~~G~deaL~ld~~G~V~E~s~sNvffv~k~g~l~TP~~~-~iL~GiTR~~vlela~~l~~~G~~~~V~er~i~~~eL~ 315 (375)
|+++|+||+|++|++|+|+|++++|| |++++|+|+||+++ ++|+||||+.++++|+++ |+ +|+|+.++++||.
T Consensus 165 A~~~g~de~L~ld~~g~v~E~s~sNl-f~~~~~~l~TP~~~~~~L~GitR~~ll~~~~~~---g~--~v~e~~l~~~dL~ 238 (288)
T PRK08320 165 ANLAGVDEAIMLNDEGYVAEGTGDNI-FIVKNGKLITPPTYAGALEGITRNAVIEIAKEL---GI--PVREELFTLHDLY 238 (288)
T ss_pred HHHcCCCEEEEECCCCeEEEcCcEEE-EEEECCEEECCCCcCCCCcCHHHHHHHHHHHHc---CC--eEEEEECCHHHHH
Confidence 99999999999999999999999999 55689999999995 899999999999999998 97 9999999999999
Q ss_pred ccceEEEEcCccceEEEEEECCeecCCCChhHHHHHHHHHHHHHhh
Q 017245 316 GAAEMMYVGSTLPLLAITVWDEQPIGDGNVGELTMALSDLLWEDMV 361 (375)
Q Consensus 316 ~adEvfl~nS~~gv~PV~~id~~~i~~g~~gpvt~~L~~~~~~~i~ 361 (375)
+|||+|+|||++||+||++||++.+++|++||++++|++.|.+.+.
T Consensus 239 ~ade~f~~ns~~gv~pV~~i~~~~~~~~~~g~~~~~l~~~~~~~~~ 284 (288)
T PRK08320 239 TADEVFLTGTAAEVIPVVKVDGRVIGDGKPGPITKKLLEEFRELTK 284 (288)
T ss_pred hCCEEEEecChhhEEEEEEECCEECCCCCcCHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999975443
No 4
>TIGR01122 ilvE_I branched-chain amino acid aminotransferase, group I. Among the class IV aminotransferases are two phylogenetically separable groups of branched-chain amino acid aminotransferase (IlvE). The last common ancestor of the two lineages appears also to have given rise to a family of D-amino acid aminotransferases (DAAT). This model represents the IlvE family more strongly similar to the DAAT family.
Probab=100.00 E-value=3.3e-59 Score=452.84 Aligned_cols=274 Identities=26% Similarity=0.394 Sum_probs=247.5
Q ss_pred eeCCEecCCCCceeCcCCcccccCceeEEeEEEeCC----eecCHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHh
Q 017245 83 IFGGIILDPAMMVIPIDDHMVHRGHGVFDTAIILNG----YLYELDVHLDRFLRSAVSARISSPFPRSTLRSILVQLTAA 158 (375)
Q Consensus 83 ~~~g~~~~~~~~~lp~~D~~~~yGdgvFET~rv~~G----~i~~ld~Hl~RL~~Sa~~l~i~~p~~~e~l~~~I~~li~~ 158 (375)
|+||.+++..++.|+++||||+||||+|||+++++| ++++|++|++||.+||+.|+|+.|++.+++++.|.+++++
T Consensus 1 ~~ng~~v~~~~~~i~~~drg~~~GdgvFEt~r~~~g~~~~~~~~l~~Hl~RL~~Sa~~l~i~~~~~~~~l~~~i~~~i~~ 80 (298)
T TIGR01122 1 WMDGEFVDWEDAKVHVLTHALHYGTGVFEGIRAYDTDKGPAIFRLKEHIQRLYDSAKIYRMEIPYSKEELMEATRETLRK 80 (298)
T ss_pred CcCCEEEEhhhcccChhhhhhhccceEEEEEEEEcCCCcceeeChHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHh
Confidence 679999999999999999999999999999999999 9999999999999999999999889999999999999999
Q ss_pred cCCCCeeEEEEEecCCCCcccCCCCCCCceEEEEEEeCCC--C--cCCCCeEEEEeeeecCCC--CCCCCcccC-ChHHH
Q 017245 159 SQCKKGTLRFWLTAGPGDFLLSPAGCPTSAFYAVVIDDDF--S--QCKEGVKVITSSIPMKPR--LFATVKNVN-YLPNV 231 (375)
Q Consensus 159 ~~~~~g~iR~~vs~G~g~~~~~p~~~~~~~~~~~~~~~p~--~--~~~~Gv~l~~s~~~~~~~--~~~~iKt~n-yl~~v 231 (375)
++..+++||++|++|.+.+++.+.....+.+++.+.+.+. . ...+|+++.++++++.++ ..+++|+.| |++++
T Consensus 81 ~~~~~~~ir~~v~rg~~~~g~~~~~~~~~~~~v~~~~~~~~~~~~~~~~g~~l~~~~~~r~~~~~~~~~~K~~~~yl~~v 160 (298)
T TIGR01122 81 NNLRSAYIRPLVFRGDGDLGLNPRAGYKPDVIIAAWPWGAYLGEEALEKGIDAKVSSWRRNAPNTIPTAAKAGGNYLNSL 160 (298)
T ss_pred cCCCCEEEEEEEEEccCCCCcCCCCCCCceEEEEEeccccccCcccccCCeEEEEEEEEcCCCCCcCccchhhhhhHHHH
Confidence 9888999999999998887776644446677777665432 1 135799999988877532 347999996 99999
Q ss_pred HHHHHHHhcCCcEEEEEcCCCcEeeeCCceEEEEEeCCEEEecCCC-CccccHHHHHHHHHhhhhhhCCCcceEEEEEcC
Q 017245 232 LAKMEAEDKGASASIWIDEDGYVAEGPNVNVAFITHDKELVLPFFD-KILSGCTAKRLLELAPKLVEQGRLKSVKTANLT 310 (375)
Q Consensus 232 la~~eA~~~G~deaL~ld~~G~V~E~s~sNvffv~k~g~l~TP~~~-~iL~GiTR~~vlela~~l~~~G~~~~V~er~i~ 310 (375)
+++++|+++|+||+||+|++|+|+|++++|+ |++++|+|+||+++ ++|+||||+.|+++|+++ |+ +|+|+.++
T Consensus 161 ~a~~~a~~~g~de~l~ld~~g~v~E~s~sNl-f~v~~~~l~TP~~~~~~L~GItR~~il~la~~~---g~--~v~e~~i~ 234 (298)
T TIGR01122 161 LAKSEARRHGYDEAILLDVEGYVAEGSGENI-FIVKDGVLFTPPVTSSILPGITRDTVITLAKEL---GI--EVVEQPIS 234 (298)
T ss_pred HHHHHHHHcCCCEEEEECCCCCEEECCceEE-EEEECCEEECCCCCCCcCcchHHHHHHHHHHHc---CC--cEEEEeCC
Confidence 9999999999999999999999999999999 55689999999996 799999999999999998 97 99999999
Q ss_pred HHHHhccceEEEEcCccceEEEEEECCeecCCCChhHHHHHHHHHHHHHhhcC
Q 017245 311 VDEAKGAAEMMYVGSTLPLLAITVWDEQPIGDGNVGELTMALSDLLWEDMVAG 363 (375)
Q Consensus 311 ~~eL~~adEvfl~nS~~gv~PV~~id~~~i~~g~~gpvt~~L~~~~~~~i~~g 363 (375)
++||.+|||+|+|||+.||+||++||++.+++|++||++++|++.|++ ++.+
T Consensus 235 ~~eL~~adevfltns~~gv~PV~~id~~~~~~~~~g~~~~~l~~~~~~-~~~~ 286 (298)
T TIGR01122 235 REELYTADEAFFTGTAAEITPIREVDGRKIGNGRRGPVTKKLQEAFFD-LVTG 286 (298)
T ss_pred HHHHhhCCEEEEcCCcceEEEEEEECCEECCCCCCChHHHHHHHHHHH-HHcC
Confidence 999999999999999999999999999999999999999999999984 5554
No 5
>cd01558 D-AAT_like D-Alanine aminotransferase (D-AAT_like): D-amino acid aminotransferase catalyzes transamination between D-amino acids and their respective alpha-keto acids. It plays a major role in the synthesis of bacterial cell wall components like D-alanine and D-glutamate in addition to other D-amino acids. The enzyme like other members of this superfamily requires PLP as a cofactor. Members of this subgroup are found in all three forms of life.
Probab=100.00 E-value=4.3e-59 Score=445.61 Aligned_cols=266 Identities=32% Similarity=0.468 Sum_probs=241.1
Q ss_pred eeCCEecCCCCceeCcCCcccccCceeEEeEEEeCCeecCHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhcCCC
Q 017245 83 IFGGIILDPAMMVIPIDDHMVHRGHGVFDTAIILNGYLYELDVHLDRFLRSAVSARISSPFPRSTLRSILVQLTAASQCK 162 (375)
Q Consensus 83 ~~~g~~~~~~~~~lp~~D~~~~yGdgvFET~rv~~G~i~~ld~Hl~RL~~Sa~~l~i~~p~~~e~l~~~I~~li~~~~~~ 162 (375)
|+||+++++.++.+|++||+++||||+||||++++|++++|++|++||.+||+.|+|+.|++.+++++.+.++++.++..
T Consensus 1 ~~nG~~~~~~~~~i~~~d~g~~~G~gvFEt~r~~~g~~~~l~~Hl~RL~~Sa~~l~~~~~~~~~~l~~~i~~~~~~~~~~ 80 (270)
T cd01558 1 YLNGEYVPREEAKVSVFDRGFLFGDGVYEVIRVYNGKPFALDEHLDRLYRSAKELRIDIPYTREELKELIRELVAKNEGG 80 (270)
T ss_pred CcCCeEeEHHHCccccccchhcccceEEEEEEEECCEEecHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCCC
Confidence 67999999999999999999999999999999999999999999999999999999998889999999999999998888
Q ss_pred CeeEEEEEecCCCCcccCCCCCCCceEEEEEEeCCCC---cCCCCeEEEEeeeecCCCCCCCCcccCChHHHHHHHHHHh
Q 017245 163 KGTLRFWLTAGPGDFLLSPAGCPTSAFYAVVIDDDFS---QCKEGVKVITSSIPMKPRLFATVKNVNYLPNVLAKMEAED 239 (375)
Q Consensus 163 ~g~iR~~vs~G~g~~~~~p~~~~~~~~~~~~~~~p~~---~~~~Gv~l~~s~~~~~~~~~~~iKt~nyl~~vla~~eA~~ 239 (375)
++.+|+.+++|.++.++.+..+..+.+++.+.+.+.. ...+|+++.++++++. ..+++|+.||+++++++++|++
T Consensus 81 ~~~~~~~~t~g~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~gv~~~~~~~~~~--~~~~~K~~ny~~~~~a~~~a~~ 158 (270)
T cd01558 81 EGDVYIQVTRGVGPRGHDFPKCVKPTVVIITQPLPLPPAELLEKGVRVITVPDIRW--LRCDIKSLNLLNNVLAKQEAKE 158 (270)
T ss_pred CceEEEEEEeCCCccCCCCCCCCCCEEEEEEEecCCCChhhhhcCeEEEEeccccc--CCCCchhhccHHHHHHHHHHHH
Confidence 8999999999988777766555567777666654421 2367999888776543 4568999999999999999999
Q ss_pred cCCcEEEEEcCCCcEeeeCCceEEEEEeCCEEEecCCC-CccccHHHHHHHHHhhhhhhCCCcceEEEEEcCHHHHhccc
Q 017245 240 KGASASIWIDEDGYVAEGPNVNVAFITHDKELVLPFFD-KILSGCTAKRLLELAPKLVEQGRLKSVKTANLTVDEAKGAA 318 (375)
Q Consensus 240 ~G~deaL~ld~~G~V~E~s~sNvffv~k~g~l~TP~~~-~iL~GiTR~~vlela~~l~~~G~~~~V~er~i~~~eL~~ad 318 (375)
+|+||+|++|++|+|+|++++|| |++++|+|+||+++ ++|+||||++++++|+++ |+ +|+|+.++++||.+||
T Consensus 159 ~g~de~l~ld~~g~v~E~~~sNi-f~~~~~~l~TP~~~~~~L~GitR~~vl~~a~~~---g~--~v~e~~i~~~eL~~ad 232 (270)
T cd01558 159 AGADEAILLDADGLVTEGSSSNV-FIVKNGVLVTPPLDNGILPGITRATVIELAKEL---GI--PVEERPFSLEELYTAD 232 (270)
T ss_pred cCCCEEEEEcCCCEEEEcCcEEE-EEEECCEEECCCCcCCCCCChHHHHHHHHHHHc---CC--eEEEEeCCHHHHhhCC
Confidence 99999999999999999999999 55689999999996 899999999999999998 97 9999999999999999
Q ss_pred eEEEEcCccceEEEEEECCeecCCCChhHHHHHHHHHH
Q 017245 319 EMMYVGSTLPLLAITVWDEQPIGDGNVGELTMALSDLL 356 (375)
Q Consensus 319 Evfl~nS~~gv~PV~~id~~~i~~g~~gpvt~~L~~~~ 356 (375)
|+|+|||++||+||.+||++.+++|++||++++|++.|
T Consensus 233 e~fl~ns~~gv~PV~~i~~~~~~~~~~~~~~~~l~~~~ 270 (270)
T cd01558 233 EVFLTSTTAEVMPVVEIDGRPIGDGKPGPVTKRLREAY 270 (270)
T ss_pred EEEEecCcccEEEEEEECCeECCCCCCCHHHHHHHHhC
Confidence 99999999999999999999999889999999998864
No 6
>PRK06680 D-amino acid aminotransferase; Reviewed
Probab=100.00 E-value=7.1e-59 Score=448.20 Aligned_cols=273 Identities=29% Similarity=0.408 Sum_probs=244.4
Q ss_pred ceeCCEecCCCCceeCcCCcccccCceeEEeEEEeCCeecCHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhcCC
Q 017245 82 SIFGGIILDPAMMVIPIDDHMVHRGHGVFDTAIILNGYLYELDVHLDRFLRSAVSARISSPFPRSTLRSILVQLTAASQC 161 (375)
Q Consensus 82 ~~~~g~~~~~~~~~lp~~D~~~~yGdgvFET~rv~~G~i~~ld~Hl~RL~~Sa~~l~i~~p~~~e~l~~~I~~li~~~~~ 161 (375)
.|+||++++..++.|+++||+|+||||||||+++++|++++|++|++||.+||+.|+|+.|++.+++++.+.+++++++.
T Consensus 5 ~~~nG~~~~~~~~~i~~~drg~~yGdGvFEt~r~~~g~~~~l~~Hl~RL~~Sa~~L~i~~~~~~~~l~~~i~~~~~~~~~ 84 (286)
T PRK06680 5 AYVNGRYVNHREARVHIEDRGFQFADGIYEVCAVRDGKLVDLDRHLARLFRSLGEIRIAPPMTRAELVEVLRELIRRNRV 84 (286)
T ss_pred EEECCEEEEHHHCcccccccccceeeEEEEEEEEECCEEechHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCC
Confidence 68999999999999999999999999999999999999999999999999999999999889999999999999999988
Q ss_pred CCeeEEEEEecCCCCcccC-CCCCCCceEEEEEEeCCC-C-c--CCCCeEEEEeeeecCCCCCCCCcccCChHHHHHHHH
Q 017245 162 KKGTLRFWLTAGPGDFLLS-PAGCPTSAFYAVVIDDDF-S-Q--CKEGVKVITSSIPMKPRLFATVKNVNYLPNVLAKME 236 (375)
Q Consensus 162 ~~g~iR~~vs~G~g~~~~~-p~~~~~~~~~~~~~~~p~-~-~--~~~Gv~l~~s~~~~~~~~~~~iKt~nyl~~vla~~e 236 (375)
.++.+|+++++|.+..++. +..+..+.+++.+.+.+. . . ..+|+++.++... ++..+++|+.||+.+++++++
T Consensus 85 ~~~~lr~~vtrG~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~gv~~~~~~~~--~~~~~~~Ks~nyl~~vla~~e 162 (286)
T PRK06680 85 REGLVYLQVTRGVARRDHVFPAADVKPSVVVFAKSVDFARPAAAAETGIKVITVPDN--RWKRCDIKSVGLLPNVLAKQA 162 (286)
T ss_pred CceEEEEEEEeCCCCCCCCCCCCCCCcEEEEEEEeccccCChhHHhCCeEEEEecCC--CCCCCCcchhccHHHHHHHHH
Confidence 8999999999998765554 333456777777766442 1 1 3679988776443 234578999999999999999
Q ss_pred HHhcCCcEEEEEcCCCcEeeeCCceEEEEEeCCEEEecCCC-CccccHHHHHHHHHhhhhhhCCCcceEEEEEcCHHHHh
Q 017245 237 AEDKGASASIWIDEDGYVAEGPNVNVAFITHDKELVLPFFD-KILSGCTAKRLLELAPKLVEQGRLKSVKTANLTVDEAK 315 (375)
Q Consensus 237 A~~~G~deaL~ld~~G~V~E~s~sNvffv~k~g~l~TP~~~-~iL~GiTR~~vlela~~l~~~G~~~~V~er~i~~~eL~ 315 (375)
|+++|+||+|++| +|+|+|++++|+|++.++|+|+||+++ ++|+||||+.++++|+++ |+ +|+|+.++++||.
T Consensus 163 A~~~g~dd~l~ld-~g~v~E~~~sN~f~~~~~~~l~TP~~~~~iL~Gitr~~il~~a~~~---g~--~v~e~~i~~~el~ 236 (286)
T PRK06680 163 AKEAGAQEAWMVD-DGFVTEGASSNAWIVTKDGKLVTRPADNFILPGITRHTLIDLAKEL---GL--EVEERPFTLQEAY 236 (286)
T ss_pred HHHCCCCEEEEec-CCEEEEcCcEEEEEEEECCEEEeCCCCCCCCcCHHHHHHHHHHHHc---CC--eEEEEcCCHHHHh
Confidence 9999999999999 999999999999655489999999986 799999999999999998 97 9999999999999
Q ss_pred ccceEEEEcCccceEEEEEECCeecCCCChhHHHHHHHHHHHHHhhc
Q 017245 316 GAAEMMYVGSTLPLLAITVWDEQPIGDGNVGELTMALSDLLWEDMVA 362 (375)
Q Consensus 316 ~adEvfl~nS~~gv~PV~~id~~~i~~g~~gpvt~~L~~~~~~~i~~ 362 (375)
+|||+|+|||+.||+||.+||++.+++|++||++++|+++|++.+..
T Consensus 237 ~ade~f~~ns~~gi~pV~~id~~~~~~~~~g~~~~~L~~~~~~~~~~ 283 (286)
T PRK06680 237 AAREAFITAASSFVFPVVQIDGKQIGNGKPGPIAKRLREAYEEFARL 283 (286)
T ss_pred cCcEEEEecCcccEEEEEEECCEECCCCCCCHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999989999999999999865544
No 7
>PRK12400 D-amino acid aminotransferase; Reviewed
Probab=100.00 E-value=3.8e-58 Score=443.97 Aligned_cols=272 Identities=25% Similarity=0.414 Sum_probs=238.4
Q ss_pred ceeCCEecCCC--CceeCcCCcccccCceeEEeEEEeCCeecCHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhc
Q 017245 82 SIFGGIILDPA--MMVIPIDDHMVHRGHGVFDTAIILNGYLYELDVHLDRFLRSAVSARISSPFPRSTLRSILVQLTAAS 159 (375)
Q Consensus 82 ~~~~g~~~~~~--~~~lp~~D~~~~yGdgvFET~rv~~G~i~~ld~Hl~RL~~Sa~~l~i~~p~~~e~l~~~I~~li~~~ 159 (375)
.|+||++++.+ ...||++|||++|||||||||++++|++++|++|++||.+||++|+|+.|++.+++++.+.++++++
T Consensus 7 ~~~ng~~v~~~~~~~~i~~~drgl~yGdgvFEtir~~~G~~~~l~~Hl~RL~~Sa~~L~i~~p~~~~~l~~~l~~~~~~~ 86 (290)
T PRK12400 7 VLWNDAVIDTTKQKTYIELEERGLQFGDGVYEVIRLYKGNFHLLDPHITRLYRSMEEIELTLPFSKAELITLLYKLIENN 86 (290)
T ss_pred EEECCEEechHHcCceeccccchhhhcceEEEEEEEECCEecccHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhc
Confidence 68999999998 4569999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CC-CCeeEEEEEecCCCCcccCCCCCCCceEEEEEEeCCCC--cCCCCeEEEEeeeecCCCCCCCCcccCChHHHHHHHH
Q 017245 160 QC-KKGTLRFWLTAGPGDFLLSPAGCPTSAFYAVVIDDDFS--QCKEGVKVITSSIPMKPRLFATVKNVNYLPNVLAKME 236 (375)
Q Consensus 160 ~~-~~g~iR~~vs~G~g~~~~~p~~~~~~~~~~~~~~~p~~--~~~~Gv~l~~s~~~~~~~~~~~iKt~nyl~~vla~~e 236 (375)
+. .+++||+.+++|.+..++.++....+.+++.+.+.+.+ ...+|+++.+.... ++..+++|+.||+.+++++++
T Consensus 87 ~~~~~~~iri~v~rG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~~~Kt~nyl~~vla~~e 164 (290)
T PRK12400 87 NFHEDGTIYLQVSRGVQARTHTFSYDVPPTIYAYITKKERPALWIEYGVRAISEPDT--RWLRCDIKSLNLLPNILAATK 164 (290)
T ss_pred CCCCCEEEEEEEEeCCCCCCCCCCCCCCcEEEEEEecccCchhHHhcCcEEEECCCC--CccCCCCcccccHHHHHHHHH
Confidence 75 68899999999977555544333455666555432221 13578887664322 344578999999999999999
Q ss_pred HHhcCCcEEEEEcCCCcEeeeCCceEEEEEeCCEEEecCCC-CccccHHHHHHHHHhhhhhhCCCcceEEEEEcCHHHHh
Q 017245 237 AEDKGASASIWIDEDGYVAEGPNVNVAFITHDKELVLPFFD-KILSGCTAKRLLELAPKLVEQGRLKSVKTANLTVDEAK 315 (375)
Q Consensus 237 A~~~G~deaL~ld~~G~V~E~s~sNvffv~k~g~l~TP~~~-~iL~GiTR~~vlela~~l~~~G~~~~V~er~i~~~eL~ 315 (375)
|+++|+||+|++| +|+|+|++++|+ |+++||+|+||+++ ++|+||||++++++|+++ |+ +|+|+.++++||.
T Consensus 165 a~~~g~deaL~l~-~g~v~E~t~sNi-f~v~~~~l~TPpl~~g~L~GItR~~llela~~~---gi--~v~E~~i~~~eL~ 237 (290)
T PRK12400 165 AERKGCKEALFVR-NGTVTEGSHSNF-FLIKNGTLYTHPANHLILNGIIRQYVLSLAKTL---RI--PVQEELFSVRDVY 237 (290)
T ss_pred HHHcCCCEEEEEc-CCEEEEcCceEE-EEEECCEEEeCCCCCCcCcCHHHHHHHHHHHHc---CC--cEEEEeCCHHHHH
Confidence 9999999999997 899999999999 55689999999996 899999999999999998 97 9999999999999
Q ss_pred ccceEEEEcCccceEEEEEECCeecCCCChhHHHHHHHHHHHHHhhc
Q 017245 316 GAAEMMYVGSTLPLLAITVWDEQPIGDGNVGELTMALSDLLWEDMVA 362 (375)
Q Consensus 316 ~adEvfl~nS~~gv~PV~~id~~~i~~g~~gpvt~~L~~~~~~~i~~ 362 (375)
+|||+|+|||+.||+||++||++.+++|++||++++|++.|++....
T Consensus 238 ~Adevfltns~~gv~PV~~i~~~~~~~~~~g~~t~~l~~~~~~~~~~ 284 (290)
T PRK12400 238 QADECFFTGTTIEILPMTHLDGTAIQDGQVGPITKMLQRSFSQSLLQ 284 (290)
T ss_pred hCCeeeEccCcceEEEEEEECCEECCCCCcCHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999876644
No 8
>PRK06606 branched-chain amino acid aminotransferase; Validated
Probab=100.00 E-value=5.4e-58 Score=446.04 Aligned_cols=273 Identities=26% Similarity=0.370 Sum_probs=244.8
Q ss_pred ceeCCEecCCCCceeCcCCcccccCceeEEeEEEeCCe----ecCHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH
Q 017245 82 SIFGGIILDPAMMVIPIDDHMVHRGHGVFDTAIILNGY----LYELDVHLDRFLRSAVSARISSPFPRSTLRSILVQLTA 157 (375)
Q Consensus 82 ~~~~g~~~~~~~~~lp~~D~~~~yGdgvFET~rv~~G~----i~~ld~Hl~RL~~Sa~~l~i~~p~~~e~l~~~I~~li~ 157 (375)
.|+||++++.+++.|++.||||+||||||||+++++|+ +++|++|++||.+||+.|+|+.|++.+++++.+.++++
T Consensus 9 ~~~nG~~~~~~~~~i~~~drg~~~GdgvFEtir~~~g~~~~~~~~l~~Hl~RL~~Sa~~l~i~~~~~~~~l~~~i~~~i~ 88 (306)
T PRK06606 9 IWFNGELVPWEDAKVHVLTHALHYGTGVFEGIRAYDTPKGPAIFRLREHTKRLFNSAKILRMEIPYSVDELMEAQREVVR 88 (306)
T ss_pred EEECCEEEEhHHcccChhhhhhhhcceeEEEEEEecCCCCCeeeChHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHH
Confidence 68899999999999999999999999999999999998 99999999999999999999988899999999999999
Q ss_pred hcCCCCeeEEEEEecCCCCcccCCCCCCCceEEEEEEeCCC-C---cCCCCeEEEEeeeecCCC--CCCCCcc-cCChHH
Q 017245 158 ASQCKKGTLRFWLTAGPGDFLLSPAGCPTSAFYAVVIDDDF-S---QCKEGVKVITSSIPMKPR--LFATVKN-VNYLPN 230 (375)
Q Consensus 158 ~~~~~~g~iR~~vs~G~g~~~~~p~~~~~~~~~~~~~~~p~-~---~~~~Gv~l~~s~~~~~~~--~~~~iKt-~nyl~~ 230 (375)
+++..+++||+++++|.+++++.+... .+.+++.+.+.+. . ...+|+++.++++.+..+ .++++|+ +||++|
T Consensus 89 ~~~~~~~~ir~~v~rg~~~~g~~~~~~-~~~~~i~~~~~~~~~~~~~~~~gv~l~~~~~~r~~~~~~~~~~K~~~nyl~~ 167 (306)
T PRK06606 89 KNNLKSAYIRPLVFVGDEGLGVRPHGL-PTDVAIAAWPWGAYLGEEALEKGIRVKVSSWTRHAPNSIPTRAKASGNYLNS 167 (306)
T ss_pred hcCCCCEEEEEEEEecCCccCcCCCCC-CceEEEEEeccccccCcccccCCeEEEEeeEecCCCCCcCcchhhhhccHHH
Confidence 998889999999999988777765532 4456656554321 1 135799999888776532 3578995 699999
Q ss_pred HHHHHHHHhcCCcEEEEEcCCCcEeeeCCceEEEEEeCCEEEecCCC-CccccHHHHHHHHHhhhhhhCCCcceEEEEEc
Q 017245 231 VLAKMEAEDKGASASIWIDEDGYVAEGPNVNVAFITHDKELVLPFFD-KILSGCTAKRLLELAPKLVEQGRLKSVKTANL 309 (375)
Q Consensus 231 vla~~eA~~~G~deaL~ld~~G~V~E~s~sNvffv~k~g~l~TP~~~-~iL~GiTR~~vlela~~l~~~G~~~~V~er~i 309 (375)
++++++|+++|+||+|++|++|+|+|++++|+ |++++|+|+||+++ ++|+||||+.++++|+++ |+ +|+|+.+
T Consensus 168 vla~~ea~~~G~de~l~l~~~g~v~E~~~sNl-f~v~~~~l~TP~~~~giL~GitR~~vl~~~~~~---g~--~v~e~~i 241 (306)
T PRK06606 168 ILAKTEARRNGYDEALLLDVEGYVSEGSGENI-FIVRDGVLYTPPLTSSILEGITRDTVITLAKDL---GI--EVIERRI 241 (306)
T ss_pred HHHHHHHHHcCCCEEEEECCCCCEEEcCceEE-EEEECCEEECCCCcCCcCCCHHHHHHHHHHHHc---CC--cEEEEeC
Confidence 99999999999999999999999999999999 55689999999996 799999999999999998 97 9999999
Q ss_pred CHHHHhccceEEEEcCccceEEEEEECCeecCCCChhHHHHHHHHHHHHHhh
Q 017245 310 TVDEAKGAAEMMYVGSTLPLLAITVWDEQPIGDGNVGELTMALSDLLWEDMV 361 (375)
Q Consensus 310 ~~~eL~~adEvfl~nS~~gv~PV~~id~~~i~~g~~gpvt~~L~~~~~~~i~ 361 (375)
+++||.+|||+|+|||+.||+||++||++++++|++||++++|+++|.+.+.
T Consensus 242 ~~~eL~~AdevfltnS~~gi~PV~~id~~~~~~g~~g~~~~~L~~~~~~~~~ 293 (306)
T PRK06606 242 TRDELYIADEVFFTGTAAEVTPIREVDGRQIGNGKRGPITEKLQSAYFDIVR 293 (306)
T ss_pred CHHHHhhCCEEEEcCCcceEEEEEEECcEECCCCCCCHHHHHHHHHHHHHHc
Confidence 9999999999999999999999999999999999999999999999986554
No 9
>PRK07650 4-amino-4-deoxychorismate lyase; Provisional
Probab=100.00 E-value=5.4e-58 Score=441.34 Aligned_cols=274 Identities=24% Similarity=0.289 Sum_probs=240.6
Q ss_pred ceeCCEecCCCCceeCcCCcccccCceeEEeEEEeCCeecCHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhcCC
Q 017245 82 SIFGGIILDPAMMVIPIDDHMVHRGHGVFDTAIILNGYLYELDVHLDRFLRSAVSARISSPFPRSTLRSILVQLTAASQC 161 (375)
Q Consensus 82 ~~~~g~~~~~~~~~lp~~D~~~~yGdgvFET~rv~~G~i~~ld~Hl~RL~~Sa~~l~i~~p~~~e~l~~~I~~li~~~~~ 161 (375)
.|+||++++...+.++++|||++||||+||||++++|++++|++|++||++||+.|+++.|++.+++++.+.+++++++.
T Consensus 2 ~~~nG~~~~~~~~~v~~~drg~~~GdgvFEt~r~~~g~~~~l~~Hl~RL~~Sa~~l~~~~~~~~~~l~~~l~~~~~~~~~ 81 (283)
T PRK07650 2 IYVNGQYVEEEEARISPFDHGYLYGLGVFETFRIYNGHPFLLDDHYDRLNDALDTLQIEWTMTKDEVLLILKNLLEKNGL 81 (283)
T ss_pred EEECCEEeEHHHCeecccccccccccEEEEEEEEECCEEEcHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhcCC
Confidence 47899999999999999999999999999999999999999999999999999999999888999999999999998888
Q ss_pred CCeeEEEEEecCCCCcccCCCCCCCceEEEEEEeCCCCcCCCCeEEEEeeeecC-CCCCCCCcccCChHHHHHHHHHHhc
Q 017245 162 KKGTLRFWLTAGPGDFLLSPAGCPTSAFYAVVIDDDFSQCKEGVKVITSSIPMK-PRLFATVKNVNYLPNVLAKMEAEDK 240 (375)
Q Consensus 162 ~~g~iR~~vs~G~g~~~~~p~~~~~~~~~~~~~~~p~~~~~~Gv~l~~s~~~~~-~~~~~~iKt~nyl~~vla~~eA~~~ 240 (375)
++++||+++++|.|+.++.+.....+.+++...+.+......+...+.+...+. ++.++++|+.||+.+++++++|+++
T Consensus 82 ~~~~iRl~v~rg~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Kt~~y~~~v~a~~~a~~~ 161 (283)
T PRK07650 82 ENAYVRFNVSAGIGEIGLQTEMYEEPTVIVYMKPLAPPGLPAEKEGVVLKQRRNTPEGAFRLKSHHYLNNILGKREIGND 161 (283)
T ss_pred CcEEEEEEEEeCCCCCCCCCCCCCCCEEEEEEEcCCCCChhhcCeEEEEEEEecCCCCCcchhHHhHHHHHHHHHHHHHc
Confidence 899999999999887777665555677776666543222122222223333332 4457899999999999999999999
Q ss_pred CCcEEEEEcCCCcEeeeCCceEEEEEeCCEEEecCCC-CccccHHHHHHHHHhhhhhhCCCcceEEEEEcCHHHHhccce
Q 017245 241 GASASIWIDEDGYVAEGPNVNVAFITHDKELVLPFFD-KILSGCTAKRLLELAPKLVEQGRLKSVKTANLTVDEAKGAAE 319 (375)
Q Consensus 241 G~deaL~ld~~G~V~E~s~sNvffv~k~g~l~TP~~~-~iL~GiTR~~vlela~~l~~~G~~~~V~er~i~~~eL~~adE 319 (375)
|+||+|++|++|+|+|++++|| |++++|+|+||+++ ++|+||||+.++++|+++ |+ +|+|+.++++||.+|||
T Consensus 162 g~de~llln~~G~v~E~s~sNi-f~v~~g~l~TP~l~~g~L~GitR~~li~~~~~~---g~--~v~e~~i~~~dL~~ade 235 (283)
T PRK07650 162 PNKEGIFLTEEGYVAEGIVSNL-FWVKGDIVYTPSLETGILNGITRAFVIKVLEEL---GI--EVKEGFYTKEELLSADE 235 (283)
T ss_pred CCCeEEEECCCCeEEEcCceEE-EEEECCEEEcCCCcCCCcccHHHHHHHHHHHHc---CC--eEEEEecCHHHHhhCCE
Confidence 9999999999999999999999 55689999999996 899999999999999998 97 99999999999999999
Q ss_pred EEEEcCccceEEEEEECCeecCCCChhHHHHHHHHHHHHHhhc
Q 017245 320 MMYVGSTLPLLAITVWDEQPIGDGNVGELTMALSDLLWEDMVA 362 (375)
Q Consensus 320 vfl~nS~~gv~PV~~id~~~i~~g~~gpvt~~L~~~~~~~i~~ 362 (375)
+|+|||++||+||.+||++.++ |++||++++|+++|.+.+..
T Consensus 236 ifl~ns~~gv~pV~~i~~~~~~-g~~g~~~~~l~~~~~~~~~~ 277 (283)
T PRK07650 236 VFVTNSIQEIVPLTRIEERDFP-GKVGMVTKRLQNLYEMQREK 277 (283)
T ss_pred eeeecCcccEEEEEEECCEEeC-CCCCHHHHHHHHHHHHHHHh
Confidence 9999999999999999999995 78999999999999876665
No 10
>PRK13356 aminotransferase; Provisional
Probab=100.00 E-value=1.7e-57 Score=438.58 Aligned_cols=271 Identities=22% Similarity=0.279 Sum_probs=236.7
Q ss_pred ceeCCEecCCCCceeCcCCcccccCceeEEeEEEeCCeecCHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhcCC
Q 017245 82 SIFGGIILDPAMMVIPIDDHMVHRGHGVFDTAIILNGYLYELDVHLDRFLRSAVSARISSPFPRSTLRSILVQLTAASQC 161 (375)
Q Consensus 82 ~~~~g~~~~~~~~~lp~~D~~~~yGdgvFET~rv~~G~i~~ld~Hl~RL~~Sa~~l~i~~p~~~e~l~~~I~~li~~~~~ 161 (375)
.|+||++++++.+.++++|||++||||||||+++++|++++|++|++||.+||++|+|+.|++.++|++.+.+++++++.
T Consensus 9 ~~~nG~~~~~~~~~i~~~drg~~yGdgvFEtir~~~g~~~~l~~Hl~RL~~Sa~~L~i~~~~~~~~l~~~i~~~i~~~~~ 88 (286)
T PRK13356 9 TFFDGEWHEGNVPIMGPADHAAWLGSTVFDGARAFEGVTPDLDLHCARVNRSAEALGLKPTVSAEEIEALAREGLKRFDP 88 (286)
T ss_pred EEECCEEcchhhcccccccchhhhcceeEEEEEEecCCCCCHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCC
Confidence 68899999999999999999999999999999999999999999999999999999998888999999999999998765
Q ss_pred C-CeeEEEEEecCCCCc-ccCCCCCCCceEEEEEEeCCCCcCCCCeEEEEeeeecCCC--CCCCCc-ccCChHHHHHHHH
Q 017245 162 K-KGTLRFWLTAGPGDF-LLSPAGCPTSAFYAVVIDDDFSQCKEGVKVITSSIPMKPR--LFATVK-NVNYLPNVLAKME 236 (375)
Q Consensus 162 ~-~g~iR~~vs~G~g~~-~~~p~~~~~~~~~~~~~~~p~~~~~~Gv~l~~s~~~~~~~--~~~~iK-t~nyl~~vla~~e 236 (375)
. +++||+.+++|.|.. +..+.. ..+.+++.+.+.|.. ..+|+++.++++.+..+ ..+.+| +.||+.|++++++
T Consensus 89 ~~~~~ir~~v~rg~g~~~~~~~~~-~~~~~~~~~~~~~~~-~~~gv~l~~~~~~r~~~~~~~~~~K~~~nyl~~vla~~e 166 (286)
T PRK13356 89 DTALYIRPMYWAEDGFASGVAPDP-ESTRFALCLEEAPMP-EPTGFSLTLSPFRRPTLEMAPTDAKAGCLYPNNARALRE 166 (286)
T ss_pred CCcEEEEEEEEeccCcccCcCCCc-CCceEEEEEEccCCC-CCCcEEEEEeeeecCCCCCCCccceeccchHHHHHHHHH
Confidence 4 689999999987654 232322 123344444433332 24799999988876533 225689 6799999999999
Q ss_pred HHhcCCcEEEEEcCCCcEeeeCCceEEEEEeCCEEEecCCC-CccccHHHHHHHHHhhhhhhCCCcceEEEEEcCHHHHh
Q 017245 237 AEDKGASASIWIDEDGYVAEGPNVNVAFITHDKELVLPFFD-KILSGCTAKRLLELAPKLVEQGRLKSVKTANLTVDEAK 315 (375)
Q Consensus 237 A~~~G~deaL~ld~~G~V~E~s~sNvffv~k~g~l~TP~~~-~iL~GiTR~~vlela~~l~~~G~~~~V~er~i~~~eL~ 315 (375)
|+++|+||+||+|++|+|+|++++|+ |++++|+|+||+++ ++|+||||+.|+++|+++ |+ +|+|++++++||.
T Consensus 167 a~~~g~deal~ld~~G~v~E~~~sNl-f~v~~~~l~TP~~~~~~L~GItR~~vi~~a~~~---gi--~v~e~~i~~~eL~ 240 (286)
T PRK13356 167 ARSRGFDNALVLDMLGNVAETATSNV-FMVKDGVVFTPVPNGTFLNGITRQRVIALLRED---GV--TVVETTLTYEDFL 240 (286)
T ss_pred HHHcCCCEEEEECCCCCEEEcCceEE-EEEECCEEEcCCCCCCcccCHHHHHHHHHHHHc---CC--eEEEEecCHHHHH
Confidence 99999999999999999999999999 55689999999986 799999999999999998 97 9999999999999
Q ss_pred ccceEEEEcCccceEEEEEECCeecCCCChhHHHHHHHHHHHHHhhcC
Q 017245 316 GAAEMMYVGSTLPLLAITVWDEQPIGDGNVGELTMALSDLLWEDMVAG 363 (375)
Q Consensus 316 ~adEvfl~nS~~gv~PV~~id~~~i~~g~~gpvt~~L~~~~~~~i~~g 363 (375)
+|||+|+|||+.||+||++||++.++ +||++++|+++|++.++.|
T Consensus 241 ~adevfltns~~gi~PV~~id~~~~~---~g~~~~~l~~~~~~~~~~~ 285 (286)
T PRK13356 241 EADEVFSTGNYSKVVPVTRFDDRSLQ---PGPVTRRARELYWDWAHGG 285 (286)
T ss_pred hcCceEEecChheEEEEEEECCEEec---CChHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999995 5899999999999887776
No 11
>TIGR01121 D_amino_aminoT D-amino acid aminotransferase. Specificity is broad for various D-amino acids, and differs among members of the family; the family is designated equivalog, but with this caveat attached.
Probab=100.00 E-value=1.9e-57 Score=436.14 Aligned_cols=269 Identities=30% Similarity=0.398 Sum_probs=237.9
Q ss_pred ceeCCEecCCCCceeCcCCcccccCceeEEeEEEeCCeecCHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhcCC
Q 017245 82 SIFGGIILDPAMMVIPIDDHMVHRGHGVFDTAIILNGYLYELDVHLDRFLRSAVSARISSPFPRSTLRSILVQLTAASQC 161 (375)
Q Consensus 82 ~~~~g~~~~~~~~~lp~~D~~~~yGdgvFET~rv~~G~i~~ld~Hl~RL~~Sa~~l~i~~p~~~e~l~~~I~~li~~~~~ 161 (375)
.|+||++++.+++.+|++||+++|||||||||++++|++|+|++|++||.+||+.|+|+.|++.+++++.|.+++++++.
T Consensus 2 ~~~nG~~~~~~~~~i~~~drgl~yGdgvFEtir~~~g~~~~l~~H~~RL~~Sa~~l~i~~~~~~~~l~~~i~~~~~~~~~ 81 (276)
T TIGR01121 2 VLWNGQLVEREEAKIDIEDRGYQFGDGVYEVIRVYNGKLFTVNEHIDRLYASAAKIRIDIPYTKEELHQLLHELVEKNNL 81 (276)
T ss_pred EEECCEEeEHHHCeecccccccccccEEEEEEEEECCEEeChHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhcCC
Confidence 58899999999999999999999999999999999999999999999999999999999889999999999999999988
Q ss_pred CCeeEEEEEecCCCCcccC-CCCCCCceEEEEEEeCCCCc--CCCCeEEEEeeeecCCCCCCCCcccCChHHHHHHHHHH
Q 017245 162 KKGTLRFWLTAGPGDFLLS-PAGCPTSAFYAVVIDDDFSQ--CKEGVKVITSSIPMKPRLFATVKNVNYLPNVLAKMEAE 238 (375)
Q Consensus 162 ~~g~iR~~vs~G~g~~~~~-p~~~~~~~~~~~~~~~p~~~--~~~Gv~l~~s~~~~~~~~~~~iKt~nyl~~vla~~eA~ 238 (375)
.++.||+.+++|.+..++. |..+..+.+++.+.+.+.+. ..+|+++..+...+ +..+++|+.||+.+++++++|+
T Consensus 82 ~~~~irl~~~rg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~--~~~~~~K~~nyl~~vla~~eA~ 159 (276)
T TIGR01121 82 NTGHVYFQVTRGVAPRNHQFPAGTVKPVITAYTKEVPRPEENLEKGVKAITVEDIR--WLRCDIKSLNLLGNVLAKQEAH 159 (276)
T ss_pred CceEEEEEEEcCCCCcCCCCCCCCCCcEEEEEEecccCChhHHhcCeEEEEecCCC--ccCCCcchhhhHHHHHHHHHHH
Confidence 8999999999987654443 33334456665555433221 35788876654332 3457899999999999999999
Q ss_pred hcCCcEEEEEcCCCcEeeeCCceEEEEEeCCEEEecCCC-CccccHHHHHHHHHhhhhhhCCCcceEEEEEcCHHHHhcc
Q 017245 239 DKGASASIWIDEDGYVAEGPNVNVAFITHDKELVLPFFD-KILSGCTAKRLLELAPKLVEQGRLKSVKTANLTVDEAKGA 317 (375)
Q Consensus 239 ~~G~deaL~ld~~G~V~E~s~sNvffv~k~g~l~TP~~~-~iL~GiTR~~vlela~~l~~~G~~~~V~er~i~~~eL~~a 317 (375)
++|+||+|++| +|+|+|++++|+ |++++|+|+||+++ ++|+||||+.++++|+++ |+ +|+|+.|+++||.+|
T Consensus 160 ~~g~de~l~~~-~g~v~E~~~sNi-f~v~~~~~~TP~~~~~~L~GitR~~vl~~a~~~---g~--~v~e~~i~~~el~~a 232 (276)
T TIGR01121 160 EKGAYEAILHR-GGTVTEGSSSNV-YGIKDGVLYTHPANNLILNGITRMVILACAEEN---GI--PVKEEPFTKEELLNA 232 (276)
T ss_pred HcCCCEEEEec-CCeEEecCceeE-EEEECCEEEeCCCcCCCCcCHHHHHHHHHHHHC---CC--eEEEEeCCHHHHhcC
Confidence 99999999996 899999999999 55689999999995 799999999999999998 97 999999999999999
Q ss_pred ceEEEEcCccceEEEEEECCeecCCCChhHHHHHHHHHHHHH
Q 017245 318 AEMMYVGSTLPLLAITVWDEQPIGDGNVGELTMALSDLLWED 359 (375)
Q Consensus 318 dEvfl~nS~~gv~PV~~id~~~i~~g~~gpvt~~L~~~~~~~ 359 (375)
||+|+|||+.||+||.+||++.+++|++||++++|+++|++.
T Consensus 233 de~fltns~~gi~PV~~id~~~~~~~~~g~~~~~L~~~~~~~ 274 (276)
T TIGR01121 233 DEVFVSSTTAEITPVIEIDGQQIGDGKPGPWTRQLQKAFEEK 274 (276)
T ss_pred CEEEEecCcccEEEEEEECCEECCCCCCCHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999754
No 12
>PRK07544 branched-chain amino acid aminotransferase; Validated
Probab=100.00 E-value=6.7e-57 Score=435.64 Aligned_cols=270 Identities=20% Similarity=0.222 Sum_probs=237.7
Q ss_pred ceeCCEecCCCCceeCcCCcccccCceeEEeEEEeCCeecCHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhcCC
Q 017245 82 SIFGGIILDPAMMVIPIDDHMVHRGHGVFDTAIILNGYLYELDVHLDRFLRSAVSARISSPFPRSTLRSILVQLTAASQC 161 (375)
Q Consensus 82 ~~~~g~~~~~~~~~lp~~D~~~~yGdgvFET~rv~~G~i~~ld~Hl~RL~~Sa~~l~i~~p~~~e~l~~~I~~li~~~~~ 161 (375)
.|+||++++..++.+|++||||+||||||||+++++|++++|++|++||++||++|+|+.|++.+++++.+.++++.++.
T Consensus 11 ~~~nG~~~~~~~~~i~~~drg~~~GdgvFEt~r~~~g~~~~l~~Hl~RL~~Sa~~l~i~~~~~~~~l~~~i~~~i~~~~~ 90 (292)
T PRK07544 11 IWMDGELVPWRDAKVHVLTHGLHYASSVFEGERAYGGKIFKLREHSERLRRSAELLDFEIPYSVAEIDAAKKETLAANGL 90 (292)
T ss_pred EEECCEEEEhHHCccChhhhHhhhcceeEEeeEeeCCcccChHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhcCC
Confidence 58999999999999999999999999999999999999999999999999999999999889999999999999999988
Q ss_pred CCeeEEEEEecCCCCcccCCCCCCCceEEEEEEeCC--CC--cCCCCeEEEEeeeecCCCC-C-CCCc-ccCChHHHHHH
Q 017245 162 KKGTLRFWLTAGPGDFLLSPAGCPTSAFYAVVIDDD--FS--QCKEGVKVITSSIPMKPRL-F-ATVK-NVNYLPNVLAK 234 (375)
Q Consensus 162 ~~g~iR~~vs~G~g~~~~~p~~~~~~~~~~~~~~~p--~~--~~~~Gv~l~~s~~~~~~~~-~-~~iK-t~nyl~~vla~ 234 (375)
.+++||+++++|.+..+++++.. .+.+++...+.+ ++ ...+|+++..+++++..+. + ..+| ++||+.|++++
T Consensus 91 ~~~~ir~~v~rg~~~~g~~~~~~-~~~~~v~~~~~~~~~~~~~~~~gv~l~~~~~~r~~~~~~~~~~k~~~~yl~~vla~ 169 (292)
T PRK07544 91 TDAYVRPVAWRGSEMMGVSAQQN-KIHLAIAAWEWPSYFDPEAKMKGIRLDIAKWRRPDPETAPSAAKAAGLYMICTISK 169 (292)
T ss_pred CCeEEEEEEEecCCCCCcCCCCC-CcEEEEEEeccccccCccccCCCEEEEEeEEEcCCCCCcCHhhhhhcccHHHHHHH
Confidence 89999999999988777655432 334444443322 11 1357999998888765332 2 3557 56899999999
Q ss_pred HHHHhcCCcEEEEEcCCCcEeeeCCceEEEEEeCCEEEecCCCCccccHHHHHHHHHhhhhhhCCCcceEEEEEcCHHHH
Q 017245 235 MEAEDKGASASIWIDEDGYVAEGPNVNVAFITHDKELVLPFFDKILSGCTAKRLLELAPKLVEQGRLKSVKTANLTVDEA 314 (375)
Q Consensus 235 ~eA~~~G~deaL~ld~~G~V~E~s~sNvffv~k~g~l~TP~~~~iL~GiTR~~vlela~~l~~~G~~~~V~er~i~~~eL 314 (375)
++|+++|+||+||+|++|+|+|++++|+| +++||+|+||+++++|+||||+.|+++|+++ |+ +|+|++++++||
T Consensus 170 ~~A~~~G~deal~ld~~g~V~E~~~sNlf-~v~~~~l~TP~~~~~L~GItR~~vl~~a~~~---g~--~v~e~~i~~~eL 243 (292)
T PRK07544 170 HAAEAKGYADALMLDYRGYVAEATGANIF-FVKDGVIHTPTPDCFLDGITRQTVIELAKRR---GI--EVVERHIMPEEL 243 (292)
T ss_pred HHHHHcCCCeEEEECCCCCEEEcCceEEE-EEECCEEECCCCcccccchhHHHHHHHHHHc---CC--eEEEEecCHHHH
Confidence 99999999999999999999999999994 5689999999997899999999999999998 97 999999999999
Q ss_pred hccceEEEEcCccceEEEEEECCeecCCCChhHHHHHHHHHHHHHhh
Q 017245 315 KGAAEMMYVGSTLPLLAITVWDEQPIGDGNVGELTMALSDLLWEDMV 361 (375)
Q Consensus 315 ~~adEvfl~nS~~gv~PV~~id~~~i~~g~~gpvt~~L~~~~~~~i~ 361 (375)
.+|||+|+|||+.||+||++||++.++ +||++++|+++|.+.++
T Consensus 244 ~~adevfltnS~~gi~PV~~i~~~~~~---~g~~~~~l~~~~~~~~~ 287 (292)
T PRK07544 244 AGFSECFLTGTAAEVTPVSEIGEYRFT---PGAITRDLMDDYEALVR 287 (292)
T ss_pred hhcCceeecCccceEEEEEEEeeEEeC---CChHHHHHHHHHHHHHh
Confidence 999999999999999999999999995 58999999999975543
No 13
>PRK07849 4-amino-4-deoxychorismate lyase; Provisional
Probab=100.00 E-value=1.1e-55 Score=427.23 Aligned_cols=264 Identities=27% Similarity=0.345 Sum_probs=234.1
Q ss_pred ceeCC-----EecCCCCceeCcCCcccccCceeEEeEEEeCCeecCHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Q 017245 82 SIFGG-----IILDPAMMVIPIDDHMVHRGHGVFDTAIILNGYLYELDVHLDRFLRSAVSARISSPFPRSTLRSILVQLT 156 (375)
Q Consensus 82 ~~~~g-----~~~~~~~~~lp~~D~~~~yGdgvFET~rv~~G~i~~ld~Hl~RL~~Sa~~l~i~~p~~~e~l~~~I~~li 156 (375)
.|+|| ++++++++.||++|||++||||+||||++++|++++|++|++||.+||+.|+++.| +.++++++|.+++
T Consensus 9 ~~~ng~~~~~~~~~~~~a~i~~~drg~~~GdgvFEt~rv~~g~i~~l~~Hl~RL~~Sa~~l~i~~~-~~~~l~~~i~~~v 87 (292)
T PRK07849 9 VTLDPYGGSERVHDPSAPLLHADDLAAVRGDGVFETLLVRDGRPCNLEAHLERLARSAALLDLPEP-DLDRWRRAVELAI 87 (292)
T ss_pred EEECCCCccceEechHHCCccchhcchhccceEEEEEEEECCEECCHHHHHHHHHHHHHhcCCCCC-CHHHHHHHHHHHH
Confidence 68899 99999999999999999999999999999999999999999999999999999877 8899999999999
Q ss_pred Hhc--CCCCeeEEEEEecCCCCcccCCCCCCCceEEEEEEeCCCC---cCCCCeEEEEeeeec-------CCCCCCCCcc
Q 017245 157 AAS--QCKKGTLRFWLTAGPGDFLLSPAGCPTSAFYAVVIDDDFS---QCKEGVKVITSSIPM-------KPRLFATVKN 224 (375)
Q Consensus 157 ~~~--~~~~g~iR~~vs~G~g~~~~~p~~~~~~~~~~~~~~~p~~---~~~~Gv~l~~s~~~~-------~~~~~~~iKt 224 (375)
+++ +..+++||+++++|.+..+ .+.+++.+.+.+.. ...+|+++.+++.+. .++.++++|+
T Consensus 88 ~~~~~~~~~~~iRl~v~~g~~~~~-------~~~~~i~~~p~~~~~~~~~~~gv~l~~~~~~~~~~~~~~~p~~~~~~Kt 160 (292)
T PRK07849 88 EEWRAPEDEAALRLVYSRGRESGG-------APTAWVTVSPVPERVARARREGVSVITLDRGYPSDAAERAPWLLAGAKT 160 (292)
T ss_pred HHhcCCCCCeEEEEEEeCCCCCCC-------CCeEEEEEeecCccchhhccCCeEEEEEeccccCcccccCcccccccch
Confidence 887 4678999999999865421 34566666554321 236799998875432 1234678999
Q ss_pred cCChHHHHHHHHHHhcCCcEEEEEcCCCcEeeeCCceEEEEEeCCEEEecCCC-CccccHHHHHHHHHhhhhhhCCCcce
Q 017245 225 VNYLPNVLAKMEAEDKGASASIWIDEDGYVAEGPNVNVAFITHDKELVLPFFD-KILSGCTAKRLLELAPKLVEQGRLKS 303 (375)
Q Consensus 225 ~nyl~~vla~~eA~~~G~deaL~ld~~G~V~E~s~sNvffv~k~g~l~TP~~~-~iL~GiTR~~vlela~~l~~~G~~~~ 303 (375)
.||+++++++++|+++|+||+|++|++|+|+|++++|+ |+++||+|+||+++ ++|+||||+.++++|+++ |+ +
T Consensus 161 ~ny~~~i~a~~~A~~~g~dd~L~ld~~G~v~E~s~~Ni-f~~~~g~l~TP~~~~giL~GItR~~vie~~~~~---g~--~ 234 (292)
T PRK07849 161 LSYAVNMAALRYAARRGADDVIFTSTDGYVLEGPTSTV-VIATDDRLLTPPPWYGILPGTTQAALFEVAREK---GW--D 234 (292)
T ss_pred hhhHHHHHHHHHHHHcCCCEEEEEcCCCcEEECCceEE-EEEECCEEECCCCcCCCCccHHHHHHHHHHHHc---CC--c
Confidence 99999999999999999999999999999999999999 55689999999996 899999999999999998 87 9
Q ss_pred EEEEEcCHHHHhccceEEEEcCccceEEEEEECCeecCCCChhHHHHHHHHHHHHHhhc
Q 017245 304 VKTANLTVDEAKGAAEMMYVGSTLPLLAITVWDEQPIGDGNVGELTMALSDLLWEDMVA 362 (375)
Q Consensus 304 V~er~i~~~eL~~adEvfl~nS~~gv~PV~~id~~~i~~g~~gpvt~~L~~~~~~~i~~ 362 (375)
|+|+.++++||.+|||+|+|||+.||+||.+||+++++. ||++++|+++|++.+.+
T Consensus 235 v~er~i~~~eL~~Adevfltns~~gi~pV~~id~~~~~~---~~~~~~l~~~~~~~~~~ 290 (292)
T PRK07849 235 CEYRALRPADLFAADGVWLVSSVRLAARVHTLDGRPLPR---DPLADELTELVDAAIVS 290 (292)
T ss_pred eEEEECCHHHHhhCCEEEEecCcceEEEEEEECCEECCC---ChHHHHHHHHHHHHhhc
Confidence 999999999999999999999999999999999999975 59999999999876654
No 14
>cd00449 PLPDE_IV PyridoxaL 5'-Phosphate Dependent Enzymes class IV (PLPDE_IV). This D-amino acid superfamily, one of five classes of PLPDE, consists of branched-chain amino acid aminotransferases (BCAT), D-amino acid transferases (DAAT), and 4-amino-4-deoxychorismate lyases (ADCL). BCAT catalyzes the reversible transamination reaction between the L-branched-chain amino and alpha-keto acids. DAAT catalyzes the synthesis of D-glutamic acid and D-alanine, and ADCL converts 4-amino-4-deoxychorismate to p-aminobenzoate and pyruvate. Except for a few enzymes, i. e., Escherichia coli and Salmonella BCATs, which are homohexamers arranged as a double trimer, the class IV PLPDEs are homodimers. Homodimer formation is required for catalytic activity.
Probab=100.00 E-value=2.7e-55 Score=415.48 Aligned_cols=251 Identities=36% Similarity=0.525 Sum_probs=229.2
Q ss_pred CcccccCceeEEeEEEeCCeecCHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhcCCCCeeEEEEEecCCCCccc
Q 017245 100 DHMVHRGHGVFDTAIILNGYLYELDVHLDRFLRSAVSARISSPFPRSTLRSILVQLTAASQCKKGTLRFWLTAGPGDFLL 179 (375)
Q Consensus 100 D~~~~yGdgvFET~rv~~G~i~~ld~Hl~RL~~Sa~~l~i~~p~~~e~l~~~I~~li~~~~~~~g~iR~~vs~G~g~~~~ 179 (375)
||+++||||+||||++.+|++++|++|++||.+||+.|++++|++.+++++.+.++++.++..+++||+++++|.+.+++
T Consensus 1 drg~~~GdgvFEt~r~~~g~~~~l~~Hl~RL~~sa~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~ir~~v~~g~~~~~~ 80 (256)
T cd00449 1 DRGLHYGDGVFEGLRAGKGRLFRLDEHLDRLNRSAKRLGLPIPYDREELREALKELVAANNGASLYIRPLLTRGVGGLGV 80 (256)
T ss_pred CceeeccceEEEEEEEcCcEEEChHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhCCCCCEEEEEEEEecccccCC
Confidence 79999999999999999999999999999999999999998788999999999999998888899999999999877777
Q ss_pred CCCCCCCceEEEEEEeCCC--CcCCCCeEEEEeeeecC--CCCCCCCcccCChHHHHHHHHHHhcCCcEEEEEcCCCcEe
Q 017245 180 SPAGCPTSAFYAVVIDDDF--SQCKEGVKVITSSIPMK--PRLFATVKNVNYLPNVLAKMEAEDKGASASIWIDEDGYVA 255 (375)
Q Consensus 180 ~p~~~~~~~~~~~~~~~p~--~~~~~Gv~l~~s~~~~~--~~~~~~iKt~nyl~~vla~~eA~~~G~deaL~ld~~G~V~ 255 (375)
.+..+..+.+++.+.+.+. ....+|+++.++..++. ++.++++|+.||+.+++++++|+++|+||+|++|++|+|+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~Kt~~~~~~~~a~~~a~~~g~de~llld~~g~v~ 160 (256)
T cd00449 81 APPPSPEPTFVVFASPVGAYAKGGEKGVRLITSPDRRRAAPGGTGDAKTGGNLNSVLAKQEAAEAGADEALLLDDNGYVT 160 (256)
T ss_pred CCCCCCCcEEEEEEeeccccccccCCCeEEEEeeeEEeCCCCCCccchhhCCHHHHHHHHHHHHcCCCEEEEECCCCcEE
Confidence 6665667788877765443 23468999998887763 5678899999999999999999999999999999999999
Q ss_pred eeCCceEEEEEeCCEEEecCCC-CccccHHHHHHHHHhhhhhhCCCcceEEEEEcCHHHHhccceEEEEcCccceEEEEE
Q 017245 256 EGPNVNVAFITHDKELVLPFFD-KILSGCTAKRLLELAPKLVEQGRLKSVKTANLTVDEAKGAAEMMYVGSTLPLLAITV 334 (375)
Q Consensus 256 E~s~sNvffv~k~g~l~TP~~~-~iL~GiTR~~vlela~~l~~~G~~~~V~er~i~~~eL~~adEvfl~nS~~gv~PV~~ 334 (375)
|++++|+ |++++|+|+||+++ |+|+||||+.++++|+++ |+ +|+|+.++++||.+|||+|+|||++||+||.+
T Consensus 161 E~s~sNl-f~~~~~~l~TP~~~~g~L~GitR~~vl~~~~~~---g~--~v~e~~i~~~dL~~adevfl~ns~~gv~pV~~ 234 (256)
T cd00449 161 EGSASNV-FIVKDGELVTPPLDGGILPGITRDSVIELAKEL---GI--KVEERPISLDELYAADEVFLTGTAAEVTPVTE 234 (256)
T ss_pred EcCceEE-EEEECCEEEeCCCCCCcCcchhHHHHHHHHHHc---CC--eEEEEecCHHHHhhCCEEEEccccceEEEEEE
Confidence 9999999 55689999999996 699999999999999998 97 99999999999999999999999999999999
Q ss_pred ECCeecCCCChhHHHHHHHHHH
Q 017245 335 WDEQPIGDGNVGELTMALSDLL 356 (375)
Q Consensus 335 id~~~i~~g~~gpvt~~L~~~~ 356 (375)
||++.++++++||++++|+++|
T Consensus 235 i~~~~~~~~~~~~~~~~l~~~~ 256 (256)
T cd00449 235 IDGRGIGDGKPGPVTRKLRELL 256 (256)
T ss_pred ECCeecCCCCCCHHHHHHHHhC
Confidence 9999998889999999998864
No 15
>PRK06092 4-amino-4-deoxychorismate lyase; Reviewed
Probab=100.00 E-value=3.3e-55 Score=418.64 Aligned_cols=260 Identities=24% Similarity=0.333 Sum_probs=228.0
Q ss_pred ceeCCEecCCCCceeCcCCcccccCceeEEeEEEeCCeecCHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhcCC
Q 017245 82 SIFGGIILDPAMMVIPIDDHMVHRGHGVFDTAIILNGYLYELDVHLDRFLRSAVSARISSPFPRSTLRSILVQLTAASQC 161 (375)
Q Consensus 82 ~~~~g~~~~~~~~~lp~~D~~~~yGdgvFET~rv~~G~i~~ld~Hl~RL~~Sa~~l~i~~p~~~e~l~~~I~~li~~~~~ 161 (375)
.|+||++ .+.+|++||+++||||+|||+++++|++++|++|++||.+||+.|+++.| +.+++.+.+.+++. +.
T Consensus 2 ~~~nG~~----~~~i~~~d~g~~~GdgvFEtir~~~g~~~~l~~Hl~RL~~Sa~~l~~~~~-~~~~~~~~l~~~~~--~~ 74 (268)
T PRK06092 2 FWINGQP----QESLSVSDRSTQYGDGCFTTARVRDGQVSLLSRHLQRLQDACERLAIPLD-DWAQLEQEMKQLAA--EL 74 (268)
T ss_pred EEECCcC----cCccCccccccccccceeeEEEEECCeeccHHHHHHHHHHHHHhcCCCCC-CHHHHHHHHHHHHh--hC
Confidence 4789985 56799999999999999999999999999999999999999999999866 66778888877762 45
Q ss_pred CCeeEEEEEecCCCCcccCCCCCCCceEEEEEEeCCCCc---CCCCeEEEEeeeecC-CCCCCCCcccCChHHHHHHHHH
Q 017245 162 KKGTLRFWLTAGPGDFLLSPAGCPTSAFYAVVIDDDFSQ---CKEGVKVITSSIPMK-PRLFATVKNVNYLPNVLAKMEA 237 (375)
Q Consensus 162 ~~g~iR~~vs~G~g~~~~~p~~~~~~~~~~~~~~~p~~~---~~~Gv~l~~s~~~~~-~~~~~~iKt~nyl~~vla~~eA 237 (375)
.++++|+++++|.++.++.+..++.+.+++.+.+.+... ..+|+++.+++.++. ++.++++|+.||+.+++++++|
T Consensus 75 ~~~~iri~v~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~gv~l~~~~~~~~~~~~~~~~Kt~ny~~~~~a~~~A 154 (268)
T PRK06092 75 ENGVLKVIISRGSGGRGYSPAGCAAPTRILSVSPYPAHYSRWREQGITLALCPTRLGRNPLLAGIKHLNRLEQVLIRAEL 154 (268)
T ss_pred CCeEEEEEEEccCCCCCCCCCCCCCCeEEEEeccCCccChhHhhCCEEEEEeccccCCCCCccCcchhhhHHHHHHHHHH
Confidence 688999999999877777766666677776665443211 358999888876653 4557889999999999999999
Q ss_pred HhcCCcEEEEEcCCCcEeeeCCceEEEEEeCCEEEecCCC-CccccHHHHHHHHHhhhhhhCCCcceEEEEEcCHHHHhc
Q 017245 238 EDKGASASIWIDEDGYVAEGPNVNVAFITHDKELVLPFFD-KILSGCTAKRLLELAPKLVEQGRLKSVKTANLTVDEAKG 316 (375)
Q Consensus 238 ~~~G~deaL~ld~~G~V~E~s~sNvffv~k~g~l~TP~~~-~iL~GiTR~~vlela~~l~~~G~~~~V~er~i~~~eL~~ 316 (375)
+++|+||+|++|++|+|+|++++|+ |++++|+|+||+++ ++|+||||+.++++|+++ |+ +|+|+.++++||.+
T Consensus 155 ~~~g~de~l~l~~~g~v~E~s~sNi-f~v~~~~~~TP~~~~~~L~GitR~~vl~~~~~~---g~--~v~e~~i~~~dL~~ 228 (268)
T PRK06092 155 EQTEADEALVLDSEGWVIECCAANL-FWRKGGVVYTPDLDQCGVAGVMRQFILELLAQS---GY--PVVEVDASLEELLQ 228 (268)
T ss_pred HhcCCCEEEEECCCCCEEEccceEE-EEEECCEEECCCccccCcccHHHHHHHHHHHHc---CC--eEEEEECCHHHHhh
Confidence 9999999999999999999999999 55689999999996 789999999999999998 97 99999999999999
Q ss_pred cceEEEEcCccceEEEEEECCeecCCCChhHHHHHHHHHHH
Q 017245 317 AAEMMYVGSTLPLLAITVWDEQPIGDGNVGELTMALSDLLW 357 (375)
Q Consensus 317 adEvfl~nS~~gv~PV~~id~~~i~~g~~gpvt~~L~~~~~ 357 (375)
|||+|+|||++||+||.+||++.++. ||++++|++++.
T Consensus 229 adevfltns~~gi~pV~~id~~~~~~---g~~~~~l~~~~~ 266 (268)
T PRK06092 229 ADEVFICNSLMPVWPVRAIGETSYSS---GTLTRYLQPLCE 266 (268)
T ss_pred CCEEEEeCCcceEEEEEEECCEEccc---hHHHHHHHHHHh
Confidence 99999999999999999999999964 799999999885
No 16
>cd01559 ADCL_like ADCL_like: 4-Amino-4-deoxychorismate lyase: is a member of the fold-type IV of PLP dependent enzymes that converts 4-amino-4-deoxychorismate (ADC) to p-aminobenzoate and pyruvate. Based on the information available from the crystal structure, most members of this subgroup are likely to function as dimers. The enzyme from E.Coli, the structure of which is available, is a homodimer that is folded into a small and a larger domain. The coenzyme pyridoxal 5; -phosphate resides at the interface of the two domains that is linked by a flexible loop. Members of this subgroup are found in Eukaryotes and bacteria.
Probab=100.00 E-value=1.8e-55 Score=416.22 Aligned_cols=247 Identities=39% Similarity=0.574 Sum_probs=223.3
Q ss_pred CcccccCceeEEeEEEeCCeecCHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhcCCCCeeEEEEEecCCCCccc
Q 017245 100 DHMVHRGHGVFDTAIILNGYLYELDVHLDRFLRSAVSARISSPFPRSTLRSILVQLTAASQCKKGTLRFWLTAGPGDFLL 179 (375)
Q Consensus 100 D~~~~yGdgvFET~rv~~G~i~~ld~Hl~RL~~Sa~~l~i~~p~~~e~l~~~I~~li~~~~~~~g~iR~~vs~G~g~~~~ 179 (375)
||||+||||+||||++++|++++|++|++||.+||++|+|+ |++.+++++.+.++++.++.++++||+++++|.+..++
T Consensus 1 Drg~~~GdgvFEt~~~~~g~~~~l~~Hl~RL~~Sa~~l~~~-~~~~~~l~~~i~~~i~~~~~~~~~ir~~v~rg~~~~~~ 79 (249)
T cd01559 1 DRGFAYGDGVFETMRALDGRLFLLDAHLARLERSARRLGIP-EPDLPRLRAALESLLAANDIDEGRIRLILSRGPGGRGY 79 (249)
T ss_pred CCcccccceeEEEEEEECCEEccHHHHHHHHHHHHHhcCcC-CCCHHHHHHHHHHHHHhCCCCceEEEEEEecCCCCCCC
Confidence 79999999999999999999999999999999999999998 88999999999999999888899999999999877777
Q ss_pred CCCCCCCceEEEEEEeCCCCcCCCCeEEEEeeeec-CCCCCCCCcccCChHHHHHHHHHHhcCCcEEEEEcCCCcEeeeC
Q 017245 180 SPAGCPTSAFYAVVIDDDFSQCKEGVKVITSSIPM-KPRLFATVKNVNYLPNVLAKMEAEDKGASASIWIDEDGYVAEGP 258 (375)
Q Consensus 180 ~p~~~~~~~~~~~~~~~p~~~~~~Gv~l~~s~~~~-~~~~~~~iKt~nyl~~vla~~eA~~~G~deaL~ld~~G~V~E~s 258 (375)
.+..++.+.+++.+.+.+.....+|+++.++++++ .++.++++|+.||+.+++++++|+++|+||+||+|++|+|+|++
T Consensus 80 ~~~~~~~~~~~i~~~~~~~~~~~~gv~l~~~~~~~~~~~~~~~~Kt~ny~~~~~a~~~a~~~g~de~l~l~~~g~v~E~~ 159 (249)
T cd01559 80 APSVCPGPALYVSVIPLPPAWRQDGVRLITCPVRLGEQPLLAGLKHLNYLENVLAKREARDRGADEALFLDTDGRVIEGT 159 (249)
T ss_pred CCCCCCCCEEEEEeccCCHHHHhCCcEEEEcccccCCCCCCCCcchhhhHHHHHHHHHHHhcCCCEEEEEcCCCCEEEec
Confidence 66666777777666543332246899999888776 35678999999999999999999999999999999999999999
Q ss_pred CceEEEEEeCCEEEecCCC-CccccHHHHHHHHHhhhhhhCCCcceEEEEEcCHHHHhccceEEEEcCccceEEEEEECC
Q 017245 259 NVNVAFITHDKELVLPFFD-KILSGCTAKRLLELAPKLVEQGRLKSVKTANLTVDEAKGAAEMMYVGSTLPLLAITVWDE 337 (375)
Q Consensus 259 ~sNvffv~k~g~l~TP~~~-~iL~GiTR~~vlela~~l~~~G~~~~V~er~i~~~eL~~adEvfl~nS~~gv~PV~~id~ 337 (375)
++|+ |++++|+|+||+++ ++|+||||+.++++++++ |+ +|+|+.|+++||.+|||+|+|||++||+||.+||+
T Consensus 160 ~~Ni-f~~~~~~~~TP~~~~g~L~Gitr~~~l~~~~~~---g~--~v~e~~i~~~el~~ade~~~~ns~~gi~pV~~id~ 233 (249)
T cd01559 160 ASNL-FFVKDGELVTPSLDRGGLAGITRQRVIELAAAK---GY--AVDERPLRLEDLLAADEAFLTNSLLGVAPVTAIDD 233 (249)
T ss_pred ceEE-EEEECCEEECCCcccCccccHHHHHHHHHHHHc---Cc--eEEEEecCHHHHhhCCEEEEecCccceeEEEEECC
Confidence 9999 55689999999996 799999999999999998 97 99999999999999999999999999999999998
Q ss_pred eecCCCChhHHHHHHHHHH
Q 017245 338 QPIGDGNVGELTMALSDLL 356 (375)
Q Consensus 338 ~~i~~g~~gpvt~~L~~~~ 356 (375)
+++++||++++|+++|
T Consensus 234 ---~~~~~~~~~~~l~~~~ 249 (249)
T cd01559 234 ---HDGPPGPLTRALRELL 249 (249)
T ss_pred ---cccCccHHHHHHHHhC
Confidence 4567899999999875
No 17
>TIGR01123 ilvE_II branched-chain amino acid aminotransferase, group II. Among the class IV aminotransferases are two phylogenetically separable groups of branched-chain amino acid aminotransferase (IlvE). The last common ancestor of the two lineages appears also to have given rise to a family of D-amino acid aminotransferases (DAAT). This model represents the IlvE family less similar to the DAAT family.
Probab=100.00 E-value=5.7e-55 Score=426.10 Aligned_cols=270 Identities=25% Similarity=0.322 Sum_probs=230.2
Q ss_pred eeCCEecCCCCceeCcCCcccccCceeEEeEEEe---CCe--ecCHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH
Q 017245 83 IFGGIILDPAMMVIPIDDHMVHRGHGVFDTAIIL---NGY--LYELDVHLDRFLRSAVSARISSPFPRSTLRSILVQLTA 157 (375)
Q Consensus 83 ~~~g~~~~~~~~~lp~~D~~~~yGdgvFET~rv~---~G~--i~~ld~Hl~RL~~Sa~~l~i~~p~~~e~l~~~I~~li~ 157 (375)
|+||++++.+++.||++|||++||||||||++++ +|+ +|+|++|++||.+||++|+|++ ++.+++++.+.++++
T Consensus 1 ~~nG~~~~~~~a~i~~~Drg~~yGdGvFEtir~~~~~~g~~~~~~l~~Hl~RL~~sa~~L~i~~-~~~~~l~~~l~~~~~ 79 (313)
T TIGR01123 1 WHNGRLTPYGPLHLDPGSTVLHYGQECFEGLKAYRCADGSIVLFRPDANAARLRRSARRLLMPE-LPDELFLEALRQLVK 79 (313)
T ss_pred CCCCEEEECccCeeCcchhHHHhhhhheeeeeEEECCCCcEeeeChHHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHH
Confidence 6799999999999999999999999999999988 897 7889999999999999999974 599999999999999
Q ss_pred hcCCC--------CeeEEEEEecCCCCcccCCCCCCCceEEEEEEeCCCCcCCC---CeEEEE-eeeecCCC-CCCCCcc
Q 017245 158 ASQCK--------KGTLRFWLTAGPGDFLLSPAGCPTSAFYAVVIDDDFSQCKE---GVKVIT-SSIPMKPR-LFATVKN 224 (375)
Q Consensus 158 ~~~~~--------~g~iR~~vs~G~g~~~~~p~~~~~~~~~~~~~~~p~~~~~~---Gv~l~~-s~~~~~~~-~~~~iKt 224 (375)
+++.. .+++|+.+++|.+.+++++. +.+.+++.+.+.+. ...+ ++++.. +...+..+ .++++|+
T Consensus 80 ~~~~~~~~~~~~~~~~ir~~v~~~~~~~g~~~~--~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~r~~~~~l~~~K~ 156 (313)
T TIGR01123 80 ANKDWVPPYGSGASLYLRPFVIGTEPNLGVRPA--PEYLFYVFASPVGA-YFKGGLAPVSIFVTTEYDRAAPGGTGAVKV 156 (313)
T ss_pred HccccCCCCCCCCcEEEEeEEEecCCccccCCC--CccEEEEEEEEchh-hccccccceeEEecccceecCCCCCcccee
Confidence 87642 56899999998776776654 24667766654331 1223 345443 33344433 4789999
Q ss_pred -cCChHHHHHHHHHHhcCCcEEEEEcCCCc--EeeeCCceEEEEEeCCEEEecCCC-CccccHHHHHHHHHhhhhhhCCC
Q 017245 225 -VNYLPNVLAKMEAEDKGASASIWIDEDGY--VAEGPNVNVAFITHDKELVLPFFD-KILSGCTAKRLLELAPKLVEQGR 300 (375)
Q Consensus 225 -~nyl~~vla~~eA~~~G~deaL~ld~~G~--V~E~s~sNvffv~k~g~l~TP~~~-~iL~GiTR~~vlela~~l~~~G~ 300 (375)
+||+.++++++||+++|+||+|++|++|+ |+|++++|+||+.++|+|+||+++ ++|+||||+.|+++|+++ |+
T Consensus 157 ~~nyl~~vla~~eA~~~g~deal~ld~~g~g~v~E~~~sNlf~v~~~g~l~Tp~l~~~~L~GItR~~vi~l~~~~---Gi 233 (313)
T TIGR01123 157 GGNYAASLLAQAKAAEQGCDQVVYLDPVEHTYIEEVGAMNFFFITGDGELVTPPLSGSILPGITRDSLLQLAKDL---GM 233 (313)
T ss_pred ccccHHHHHHHHHHHHCCCCEEEEEeCCCCeEEEEcCcEeEEEEEcCCEEEeCCCCCCCCcchHHHHHHHHHHHc---CC
Confidence 69999999999999999999999999977 999999999554335799999996 799999999999999998 97
Q ss_pred cceEEEEEcCHHHHhcc----ceEEEEcCccceEEEEEE--CCee--cCCCChhHHHHHHHHHHHHHhh
Q 017245 301 LKSVKTANLTVDEAKGA----AEMMYVGSTLPLLAITVW--DEQP--IGDGNVGELTMALSDLLWEDMV 361 (375)
Q Consensus 301 ~~~V~er~i~~~eL~~a----dEvfl~nS~~gv~PV~~i--d~~~--i~~g~~gpvt~~L~~~~~~~i~ 361 (375)
+|+|++++++||.+| ||+|+|||+.+|+||++| ||+. +++|++||++++|+++|++.+.
T Consensus 234 --~v~e~~i~~~~l~~A~~~~devfltnS~~gi~PV~~i~~d~~~~~~~~g~~g~~~~~l~~~~~~~~~ 300 (313)
T TIGR01123 234 --EVEERRIDIDELKAFVEAGEEVFACGTAAVITPVGEIQHGGKEVVFASGQPGEVTKALYDELTDIQY 300 (313)
T ss_pred --eEEEEecCHHHHHHHHhcCCEEEEccCceEEEEEEEEEECCeEEEcCCCCCChHHHHHHHHHHHHhc
Confidence 999999999999998 999999999999999999 7875 7888999999999999986444
No 18
>TIGR03461 pabC_Proteo aminodeoxychorismate lyase. Members of this protein family are aminodeoxychorismate lyase (ADC lyase), EC 4.1.3.38, the PabC protein of PABA biosynthesis. PABA (para-aminobenzoate) is a precursor of folate, needed for de novo purine biosynthesis. This enzyme is a pyridoxal-phosphate-binding protein in the class IV aminotransferase family (pfam01063).
Probab=100.00 E-value=9.1e-55 Score=413.99 Aligned_cols=255 Identities=26% Similarity=0.399 Sum_probs=225.0
Q ss_pred eeCCEecCCCCceeCcCCcccccCceeEEeEEEeCCeecCHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhcCCC
Q 017245 83 IFGGIILDPAMMVIPIDDHMVHRGHGVFDTAIILNGYLYELDVHLDRFLRSAVSARISSPFPRSTLRSILVQLTAASQCK 162 (375)
Q Consensus 83 ~~~g~~~~~~~~~lp~~D~~~~yGdgvFET~rv~~G~i~~ld~Hl~RL~~Sa~~l~i~~p~~~e~l~~~I~~li~~~~~~ 162 (375)
|+||+. ++.++++||||+|||||||||++++|++++|++|++||.+||+.|+|+.| +.+++++.+.++++.+ .
T Consensus 1 ~~nG~~----~~~i~~~d~g~~~G~gvFEt~r~~~G~~~~l~~Hl~RL~~Sa~~l~~~~~-~~~~l~~~~~~~~~~~--~ 73 (261)
T TIGR03461 1 WVNGVL----QTQISVSDRGLQYGDGCFTTAKVRNGKIELLDLHLERLQDAAARLGIPLP-DWDALREEMAQLAAGY--S 73 (261)
T ss_pred CcCCcc----cCccCcccccccccceeEEEEEEECCEeccHHHHHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHHhC--C
Confidence 679984 67799999999999999999999999999999999999999999999877 8999999999998865 4
Q ss_pred CeeEEEEEecCCCCcccCCCCCCCceEEEEEEeCCCCc---CCCCeEEEEeeeecC-CCCCCCCcccCChHHHHHHHHHH
Q 017245 163 KGTLRFWLTAGPGDFLLSPAGCPTSAFYAVVIDDDFSQ---CKEGVKVITSSIPMK-PRLFATVKNVNYLPNVLAKMEAE 238 (375)
Q Consensus 163 ~g~iR~~vs~G~g~~~~~p~~~~~~~~~~~~~~~p~~~---~~~Gv~l~~s~~~~~-~~~~~~iKt~nyl~~vla~~eA~ 238 (375)
++.+|+++++|.++.++.+..++.+.+++.+.+.+... ..+|+++.++++++. ++.++++|+.||+.+++++++|+
T Consensus 74 ~~~ir~~v~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~Kt~~y~~~~~a~~~A~ 153 (261)
T TIGR03461 74 LGVLKVIISRGSGGRGYSPPGCSDPTRIISVSPYPAHYSAWQQQGIRLGVSPVRLGRNPLLAGIKHLNRLEQVLIKAELE 153 (261)
T ss_pred CeEEEEEEecCCCCCCCCCCCCCCCcEEEEeccCcccChhHhcCCEEEEEeccccCCCCCCcCccccccHHHHHHHHHhh
Confidence 78999999999876666655555666766665443211 257999888877653 45678899999999999999999
Q ss_pred hcCCcEEEEEcCCCcEeeeCCceEEEEEeCCEEEecCCC-CccccHHHHHHHHHhhhhhhCCCcceEEEEEcCHHHHhcc
Q 017245 239 DKGASASIWIDEDGYVAEGPNVNVAFITHDKELVLPFFD-KILSGCTAKRLLELAPKLVEQGRLKSVKTANLTVDEAKGA 317 (375)
Q Consensus 239 ~~G~deaL~ld~~G~V~E~s~sNvffv~k~g~l~TP~~~-~iL~GiTR~~vlela~~l~~~G~~~~V~er~i~~~eL~~a 317 (375)
++|+||+||+|++|+|+|++++|+ |+++||+|+||+++ ++|+||||+.++++|+++ |+ +|+|+.|+++||.+|
T Consensus 154 ~~g~de~llln~~g~v~E~s~sNi-f~~~~~~l~TP~~~~~~L~GItR~~il~~~~~~---g~--~v~E~~i~~~eL~~a 227 (261)
T TIGR03461 154 NSEADEALVLDTDGNVVECTAANI-FWRKGNQVFTPDLSYCGVAGVMRQHVLALLPAL---GY--EIEEVKAGLEELLSA 227 (261)
T ss_pred hcCCCEEEEECCCCCEEEeccEEE-EEEECCEEECCCccccCcccHHHHHHHHHHHHc---CC--eEEEEecCHHHHhhC
Confidence 999999999999999999999999 55689999999996 799999999999999987 87 999999999999999
Q ss_pred ceEEEEcCccceEEEEEECCeecCCCChhHHHHHHH
Q 017245 318 AEMMYVGSTLPLLAITVWDEQPIGDGNVGELTMALS 353 (375)
Q Consensus 318 dEvfl~nS~~gv~PV~~id~~~i~~g~~gpvt~~L~ 353 (375)
||+|+|||++||+||.+||++.++. ||++++|+
T Consensus 228 de~f~~ns~~gi~pV~~id~~~~~~---~~~~~~l~ 260 (261)
T TIGR03461 228 DEVFITNSLMGVVPVNAIGETSYPS---RTLTRLLQ 260 (261)
T ss_pred CEEEEeCCccceEEEEEECCEEecc---hHHHHHhh
Confidence 9999999999999999999999964 79999885
No 19
>cd01557 BCAT_beta_family BCAT_beta_family: Branched-chain aminotransferase catalyses the transamination of the branched-chain amino acids leusine, isoleucine and valine to their respective alpha-keto acids, alpha-ketoisocaproate, alpha-keto-beta-methylvalerate and alpha-ketoisovalerate. The enzyme requires pyridoxal 5'-phosphate (PLP) as a cofactor to catalyze the reaction. It has been found that mammals have two foms of the enzyme - mitochondrial and cytosolic forms while bacteria contain only one form of the enzyme. The mitochondrial form plays a significant role in skeletal muscle glutamine and alanine synthesis and in interorgan nitrogen metabolism.Members of this subgroup are widely distributed in all three forms of life.
Probab=100.00 E-value=1.5e-54 Score=416.80 Aligned_cols=256 Identities=29% Similarity=0.378 Sum_probs=227.6
Q ss_pred eCcCCcccccCceeEEeEEEeC-----CeecCHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhcC-------CCC
Q 017245 96 IPIDDHMVHRGHGVFDTAIILN-----GYLYELDVHLDRFLRSAVSARISSPFPRSTLRSILVQLTAASQ-------CKK 163 (375)
Q Consensus 96 lp~~D~~~~yGdgvFET~rv~~-----G~i~~ld~Hl~RL~~Sa~~l~i~~p~~~e~l~~~I~~li~~~~-------~~~ 163 (375)
+|++|||++||||||||+++++ |++|+|++|++||.+||+.|+|+ +++.+++++.+.++++.++ ..+
T Consensus 2 i~~~drg~~yGdgvFEtir~~~~~~g~g~~~~l~~Hl~RL~~sa~~l~i~-~~~~~~l~~~i~~~i~~~~~~~~~~~~~~ 80 (279)
T cd01557 2 LHPATHALHYGQAVFEGLKAYRTPDGKIVLFRPDENAERLNRSARRLGLP-PFSVEEFIDAIKELVKLDADWVPYGGGAS 80 (279)
T ss_pred cCccccHhhcChhheeeEEEEecCCCCEeEECHHHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHHhccccCCCCCCCC
Confidence 6899999999999999999999 89999999999999999999998 8899999999999999873 357
Q ss_pred eeEEEEEecCCCCcccCCCCCCCceEEEEEEeCCCCc--CCCCeEEEEeeeecCCC-CCCCCcc-cCChHHHHHHHHHHh
Q 017245 164 GTLRFWLTAGPGDFLLSPAGCPTSAFYAVVIDDDFSQ--CKEGVKVITSSIPMKPR-LFATVKN-VNYLPNVLAKMEAED 239 (375)
Q Consensus 164 g~iR~~vs~G~g~~~~~p~~~~~~~~~~~~~~~p~~~--~~~Gv~l~~s~~~~~~~-~~~~iKt-~nyl~~vla~~eA~~ 239 (375)
++||++|++|.+.+++.+. ..+.+++.+.+.+... ..+|+++.++++++..+ ..+.+|+ .||+.|++++++|++
T Consensus 81 ~~ir~~v~rg~~~~g~~~~--~~~~~~i~~~~~~~~~~~~~~gv~l~~~~~~r~~~~~~~~~K~~~nyl~~vla~~eA~~ 158 (279)
T cd01557 81 LYIRPFIFGTDPQLGVSPA--LEYLFAVFASPVGAYFKGGEKGVSALVSSFRRAAPGGPGAAKAGGNYAASLLAQKEAAE 158 (279)
T ss_pred EEEEEEEEeccccCCcCCC--CccEEEEEEEEccccccCCCCCeEEEEeeEEcCCCCCCcccchhhccHHHHHHHHHHHH
Confidence 8999999999877776654 3566776665443211 34799999888777544 3456995 799999999999999
Q ss_pred cCCcEEEEEcCC-CcEeeeCCceEEEEEeCCEEEecCCC-CccccHHHHHHHHHhhhhhhCCCcceEEEEEcCHHHHhcc
Q 017245 240 KGASASIWIDED-GYVAEGPNVNVAFITHDKELVLPFFD-KILSGCTAKRLLELAPKLVEQGRLKSVKTANLTVDEAKGA 317 (375)
Q Consensus 240 ~G~deaL~ld~~-G~V~E~s~sNvffv~k~g~l~TP~~~-~iL~GiTR~~vlela~~l~~~G~~~~V~er~i~~~eL~~a 317 (375)
+|+||+|++|++ |+|+|++++|+ |++++|+|+||+++ ++|+||||+.++++|+++ |+ +|+|+.++++||.+|
T Consensus 159 ~g~de~l~ld~~~g~v~E~~~sNl-f~v~~~~l~TP~~~~~~L~Gitr~~v~~~~~~~---Gi--~v~e~~i~~~~l~~a 232 (279)
T cd01557 159 KGYDQALWLDGAHGYVAEVGTMNI-FFVKDGELITPPLDGSILPGITRDSILELARDL---GI--KVEERPITRDELYEA 232 (279)
T ss_pred CCCCEEEEEcCCCCEEEEeCcEEE-EEEECCEEEcCCCcCCCCCchHHHHHHHHHHHc---CC--eEEEEeCCHHHHhhC
Confidence 999999999999 99999999999 55689999999997 899999999999999998 97 999999999999999
Q ss_pred ceEEEEcCccceEEEEEECCeec--CCCChhHHHHHHHHHHHHHh
Q 017245 318 AEMMYVGSTLPLLAITVWDEQPI--GDGNVGELTMALSDLLWEDM 360 (375)
Q Consensus 318 dEvfl~nS~~gv~PV~~id~~~i--~~g~~gpvt~~L~~~~~~~i 360 (375)
||+|+|||+.||+||++||++.+ +++++||++++|++.|++.+
T Consensus 233 de~f~~ns~~gi~pV~~i~~~~~~~~~~~~gp~~~~l~~~~~~~~ 277 (279)
T cd01557 233 DEVFATGTAAVVTPVGEIDYRGKEPGEGEVGPVTKKLYDLLTDIQ 277 (279)
T ss_pred CEEEEecceeEEEEEEEEccccccCCCCCCCHHHHHHHHHHHHHh
Confidence 99999999999999999999998 88899999999999998543
No 20
>PLN03117 Branched-chain-amino-acid aminotransferase; Provisional
Probab=100.00 E-value=2.3e-54 Score=428.03 Aligned_cols=280 Identities=21% Similarity=0.252 Sum_probs=239.9
Q ss_pred ceeCCEecCCCCceeCcCCcccccCceeEEeEEEe---CCe--ecCHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Q 017245 82 SIFGGIILDPAMMVIPIDDHMVHRGHGVFDTAIIL---NGY--LYELDVHLDRFLRSAVSARISSPFPRSTLRSILVQLT 156 (375)
Q Consensus 82 ~~~~g~~~~~~~~~lp~~D~~~~yGdgvFET~rv~---~G~--i~~ld~Hl~RL~~Sa~~l~i~~p~~~e~l~~~I~~li 156 (375)
.|+||++++.+++.|++.||++|||||||||+|++ +|+ +|+|++|++||.+||++|+|+.| +.++|++.|.+++
T Consensus 45 ~~~ng~~v~~~~a~i~~~drgl~yGDGvFEtir~y~~~~G~i~lf~l~~Hl~RL~~Sa~~L~i~~p-~~~~l~~~i~~lv 123 (355)
T PLN03117 45 SFSEGKIVPYGDISISPCAGILNYGQGLFEGLKAYRTEDGRITLFRPDQNALRMQTGADRLCMTPP-SLEQFVEAVKQTV 123 (355)
T ss_pred eEECCEEEEchhceeCcchhhhhhcceeEeeEEEEECCCCcEeeeCcHHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHH
Confidence 58899999999999999999999999999999998 887 79999999999999999999977 9999999999999
Q ss_pred HhcCC-------CCeeEEEEEecCCCCcccCCCCCCCceEEEEEEeCCCC-cCCCCeEEEEee-eecC-CCCCCCCccc-
Q 017245 157 AASQC-------KKGTLRFWLTAGPGDFLLSPAGCPTSAFYAVVIDDDFS-QCKEGVKVITSS-IPMK-PRLFATVKNV- 225 (375)
Q Consensus 157 ~~~~~-------~~g~iR~~vs~G~g~~~~~p~~~~~~~~~~~~~~~p~~-~~~~Gv~l~~s~-~~~~-~~~~~~iKt~- 225 (375)
++++. ...++|+.++++.+..++.+. +++.+++.+.+.+.. ...+|+++.+++ +.+. ++.++++|++
T Consensus 124 ~~n~~~i~~~~~~~~yir~~~~g~~~~~g~~~~--~~~~~~i~~~p~~~~~~~~~gi~l~~~~~~~r~~~~~l~~~K~~~ 201 (355)
T PLN03117 124 LANKKWVPPPGKGTLYIRPLLIGSGAVLGVAPA--PEYTFLIYASPVGNYHKASSGLNLKVDHKHRRAHSGGTGGVKSCT 201 (355)
T ss_pred HhccccccCCCCCcEEEEEEEEEecCccCcCCC--CCcEEEEEEEeccccccCCCCEEEEEcCceEeCCCCCccchhhhh
Confidence 98873 245789988766444455443 355666666554321 235799988764 4553 4567899985
Q ss_pred CChHHHHHHHHHHhcCCcEEEEEcCC--CcEeeeCCceEEEEEeCCEEEecCCC-CccccHHHHHHHHHhhhhhhCCCcc
Q 017245 226 NYLPNVLAKMEAEDKGASASIWIDED--GYVAEGPNVNVAFITHDKELVLPFFD-KILSGCTAKRLLELAPKLVEQGRLK 302 (375)
Q Consensus 226 nyl~~vla~~eA~~~G~deaL~ld~~--G~V~E~s~sNvffv~k~g~l~TP~~~-~iL~GiTR~~vlela~~l~~~G~~~ 302 (375)
||+.+++++++|+++|+||+|++|.+ |+|+|++++|| |+++|++|+||+++ +||+||||+.|+++|+++ |+
T Consensus 202 nyl~~vla~~eA~~~G~deaL~ld~~~~g~v~E~~~sNl-F~v~~~~l~TP~l~~~iL~GItR~~vl~la~~~---Gi-- 275 (355)
T PLN03117 202 NYSPVVKSLIEAKSSGFSDVLFLDAATGKNIEELSACNI-FILKGNIVSTPPTSGTILPGVTRKSISELARDI---GY-- 275 (355)
T ss_pred hhHHHHHHHHHHHHCCCCEEEEEeCCCCCEEEEcCcEEE-EEEECCEEEeCCCcCCCCCCHHHHHHHHHHHHC---CC--
Confidence 99999999999999999999999974 69999999999 55689999999985 799999999999999998 97
Q ss_pred eEEEEEcCHHHHhccceEEEEcCccceEEEEEECCe----ecCCCChhHHHHHHHHHHHHHhhcCCC----CCccccc
Q 017245 303 SVKTANLTVDEAKGAAEMMYVGSTLPLLAITVWDEQ----PIGDGNVGELTMALSDLLWEDMVAGPE----TQRHCVS 372 (375)
Q Consensus 303 ~V~er~i~~~eL~~adEvfl~nS~~gv~PV~~id~~----~i~~g~~gpvt~~L~~~~~~~i~~g~~----~~~~~v~ 372 (375)
+|+|+.++++||.+|||+|+|||+.+|+||.+++.. .++++. ||+|++|+++|. +||.|.. .|..+|+
T Consensus 276 ~v~Er~i~~~eL~~AdEvFltnT~~~I~PV~~i~~~~~~~~~~~~~-~~~~~~l~~~~~-~~~~g~~~~~~~W~~~v~ 351 (355)
T PLN03117 276 QVEERDVSVDELLEAEEVFCTGTAVVVKAVETVTFHDKKVKYRTGE-EALSTKLHLILT-NIQMGVVEDKKGWMVEID 351 (355)
T ss_pred EEEEEEccHHHHhhCCEEEEccCcceEEEEEEEEecCceEEeCCCC-ChHHHHHHHHHH-HHhCCCCCCCCCCEEEcc
Confidence 999999999999999999999999999999999865 677775 899999999998 8999865 3566663
No 21
>PRK13357 branched-chain amino acid aminotransferase; Provisional
Probab=100.00 E-value=6.1e-54 Score=425.40 Aligned_cols=271 Identities=25% Similarity=0.319 Sum_probs=234.8
Q ss_pred eeCCEecCCCCceeCcCCcccccCceeEEeEEEe---CC--eecCHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH
Q 017245 83 IFGGIILDPAMMVIPIDDHMVHRGHGVFDTAIIL---NG--YLYELDVHLDRFLRSAVSARISSPFPRSTLRSILVQLTA 157 (375)
Q Consensus 83 ~~~g~~~~~~~~~lp~~D~~~~yGdgvFET~rv~---~G--~i~~ld~Hl~RL~~Sa~~l~i~~p~~~e~l~~~I~~li~ 157 (375)
|+||++++.+++.||+.||||+||||||||++++ +| ++|+|++|++||.+||++|+|+ +++.++|++.+.++++
T Consensus 42 ~~nG~~vp~~~a~is~~Drg~~yGDGvFEtir~~~~~~G~~~~f~l~~Hl~RL~~Sa~~L~i~-~~~~~~l~~~i~~li~ 120 (356)
T PRK13357 42 WHDARLVPYGPLELDPAATVLHYGQEIFEGLKAYRHKDGSIVLFRPDANAKRLQRSADRLLMP-ELPEELFLEAVKQLVK 120 (356)
T ss_pred ccCCeEeeCCCceeCcccchhhhcceeeeeEEEEEcCCCcEeeeChHHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHH
Confidence 8899999999999999999999999999999997 55 5889999999999999999997 5799999999999999
Q ss_pred hcCC--------CCeeEEEEEecCCCCcccCCCCCCCceEEEEEEeCCCC--cCCCCeEEEEe-eeecC-CCCCCCCcc-
Q 017245 158 ASQC--------KKGTLRFWLTAGPGDFLLSPAGCPTSAFYAVVIDDDFS--QCKEGVKVITS-SIPMK-PRLFATVKN- 224 (375)
Q Consensus 158 ~~~~--------~~g~iR~~vs~G~g~~~~~p~~~~~~~~~~~~~~~p~~--~~~~Gv~l~~s-~~~~~-~~~~~~iKt- 224 (375)
+++. ..+++|+.+++|.+.+++.+. ..+.+++++.+.+.. ...+|+++..+ ...+. ++.++++|+
T Consensus 121 ~n~~~~~~~~~~~~~~ir~~v~rg~~~~g~~~~--~~~~~~i~~~~~~~~~~~~~~~v~l~~~~~~~r~~~~~l~~~Kt~ 198 (356)
T PRK13357 121 ADRDWVPPYGEGASLYLRPFMIATEPFLGVKPA--EEYIFCVIASPVGAYFKGGVKPVSIWVSDEYDRAAPGGTGAAKVG 198 (356)
T ss_pred hcccccCCCCCCccEEEEEEEEccCCcccccCC--CccEEEEEEEechhhcccCCCceEEEEcCCeEecCCCCcchhhcc
Confidence 8763 256899999999777776543 246777766643311 11267887766 45554 445689998
Q ss_pred cCChHHHHHHHHHHhcCCcEEEEEcC--CCcEeeeCCceEEEEEeCCEEEecCCC-CccccHHHHHHHHHhhhhhhCCCc
Q 017245 225 VNYLPNVLAKMEAEDKGASASIWIDE--DGYVAEGPNVNVAFITHDKELVLPFFD-KILSGCTAKRLLELAPKLVEQGRL 301 (375)
Q Consensus 225 ~nyl~~vla~~eA~~~G~deaL~ld~--~G~V~E~s~sNvffv~k~g~l~TP~~~-~iL~GiTR~~vlela~~l~~~G~~ 301 (375)
+||+.++++++||+++|+||+|++|. +|+|+|++++|+ |++++++++||+++ +||+||||+.|+++|+++ |+
T Consensus 199 ~nyl~~vla~~eA~~~G~deaL~ld~~~~G~V~E~s~sNl-F~v~~~~l~TPpl~~giL~GItR~~vlela~~~---Gi- 273 (356)
T PRK13357 199 GNYAASLLAQAEAKEKGCDQVLYLDAVEHTYIEEVGGMNF-FFITKDGTVTPPLSGSILPGITRDSLLQLAEDL---GL- 273 (356)
T ss_pred cccHHHHHHHHHHHHCCCCEEEEEcCCCCCEEEEcCcEEE-EEEECCEEEECCCCCCCCcchHHHHHHHHHHHC---CC-
Confidence 79999999999999999999999994 899999999999 55689999999996 799999999999999998 97
Q ss_pred ceEEEEEcCHHH------HhccceEEEEcCccceEEEEEEC----CeecCCCChhHHHHHHHHHHHHHhhcC
Q 017245 302 KSVKTANLTVDE------AKGAAEMMYVGSTLPLLAITVWD----EQPIGDGNVGELTMALSDLLWEDMVAG 363 (375)
Q Consensus 302 ~~V~er~i~~~e------L~~adEvfl~nS~~gv~PV~~id----~~~i~~g~~gpvt~~L~~~~~~~i~~g 363 (375)
+|+|++++++| |.+|||+|+|||+.||+||++|| ++.+++|++||++++|+++|++ +..|
T Consensus 274 -~v~e~~i~~~el~~~~~L~~AdevFltnS~~gi~PV~~id~~~~~~~~~~g~~g~~t~~L~~~~~~-~~~~ 343 (356)
T PRK13357 274 -TVEERPVSIDEWQADAASGEFTEAFACGTAAVITPIGGIKYKDKEFVIGDGEVGPVTQKLYDELTG-IQFG 343 (356)
T ss_pred -eEEEEecCHHHhhhhhccCcceEEEEcccccEEEEEEEEEeCCCEEEcCCCCCChHHHHHHHHHHH-HhcC
Confidence 99999999999 89999999999999999999998 4588888999999999999985 4454
No 22
>PLN02782 Branched-chain amino acid aminotransferase
Probab=100.00 E-value=5.7e-54 Score=430.09 Aligned_cols=274 Identities=22% Similarity=0.306 Sum_probs=239.0
Q ss_pred ceeCCEecCCCCceeCcCCcccccCceeEEeEEEe---CCe--ecCHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Q 017245 82 SIFGGIILDPAMMVIPIDDHMVHRGHGVFDTAIIL---NGY--LYELDVHLDRFLRSAVSARISSPFPRSTLRSILVQLT 156 (375)
Q Consensus 82 ~~~~g~~~~~~~~~lp~~D~~~~yGdgvFET~rv~---~G~--i~~ld~Hl~RL~~Sa~~l~i~~p~~~e~l~~~I~~li 156 (375)
.|.||++++.+.+.|++.||++||||||||||+++ +|+ +|++++|++||.+||++|+|+.| +.+++.++|.+++
T Consensus 95 ~w~ng~ivp~~~~~i~~~d~gl~YGdgvFEg~kayr~~~G~i~lFr~d~H~~RL~~SA~rL~lp~~-~~e~l~~~i~~lv 173 (403)
T PLN02782 95 EFSKGELQRFGNIELSPSAGVLNYGQGLFEGLKAYRKEDGNILLFRPEENAIRMRNGAERMCMPAP-TVEQFVEAVKETV 173 (403)
T ss_pred cEeCCEEEECCCCEeChhhhHHhhhhhhhheEEEEEcCCCcEeeeChHHHHHHHHHHHHHhCcCCC-CHHHHHHHHHHHH
Confidence 48899999999999999999999999999999997 565 79999999999999999999866 9999999999999
Q ss_pred HhcCC-------CCeeEEEEEecCCCCcccCCCCCCCceEEEEEEeCCCC-c-CCCCeEEEEe-eeecC-CCCCCCCccc
Q 017245 157 AASQC-------KKGTLRFWLTAGPGDFLLSPAGCPTSAFYAVVIDDDFS-Q-CKEGVKVITS-SIPMK-PRLFATVKNV 225 (375)
Q Consensus 157 ~~~~~-------~~g~iR~~vs~G~g~~~~~p~~~~~~~~~~~~~~~p~~-~-~~~Gv~l~~s-~~~~~-~~~~~~iKt~ 225 (375)
++++. ...+||++++++.+.+++.+. +++.+++++.+.+.. . -.+++++.++ ++.|. ++.++++|++
T Consensus 174 ~~n~~~vP~~~~~~lyiRp~v~g~~~~lG~~~~--~~~~~~i~~~p~~~~~~~g~~~v~l~v~~~~~Ra~p~g~g~~Kt~ 251 (403)
T PLN02782 174 LANKRWVPPPGKGSLYIRPLLMGSGAVLGLAPA--PEYTFLIYVSPVGNYFKEGVAPINLIVENEFHRATPGGTGGVKTI 251 (403)
T ss_pred HhccccCCCCCCccEEEEEEEEecCCCcCcCCC--CCcEEEEEEEECccccccCCccEEEEEeCceeecCCCCCcccchh
Confidence 98874 245899999887666777665 356777777653311 1 1246666665 35554 5578999986
Q ss_pred -CChHHHHHHHHHHhcCCcEEEEEc--CCCcEeeeCCceEEEEEeCCEEEecCCC-CccccHHHHHHHHHhhhhhhCCCc
Q 017245 226 -NYLPNVLAKMEAEDKGASASIWID--EDGYVAEGPNVNVAFITHDKELVLPFFD-KILSGCTAKRLLELAPKLVEQGRL 301 (375)
Q Consensus 226 -nyl~~vla~~eA~~~G~deaL~ld--~~G~V~E~s~sNvffv~k~g~l~TP~~~-~iL~GiTR~~vlela~~l~~~G~~ 301 (375)
||+++++++++|+++|+||+||+| ++|+|+|++++|+ |++++++|+||+++ +||+||||+.||++|+++ |+
T Consensus 252 ~nY~~~l~a~~eA~~~G~de~L~Ld~~~~g~V~E~~~sNl-F~v~~~~l~TP~l~~~iLpGITR~svlela~~~---Gi- 326 (403)
T PLN02782 252 GNYAAVLKAQSIAKAKGYSDVLYLDCVHKKYLEEVSSCNI-FIVKDNVISTPAIKGTILPGITRKSIIDVARSQ---GF- 326 (403)
T ss_pred hhHHHHHHHHHHHHHcCCCEEEEEeCCCCCEEEEcCcEEE-EEEECCEEEcCCCcCCcCcCHHHHHHHHHHHHc---CC-
Confidence 999999999999999999999999 4899999999999 45689999999996 799999999999999998 97
Q ss_pred ceEEEEEcCHHHHhccceEEEEcCccceEEEEEE--CCeec--CCCChhHHHHHHHHHHHHHhhcCCC
Q 017245 302 KSVKTANLTVDEAKGAAEMMYVGSTLPLLAITVW--DEQPI--GDGNVGELTMALSDLLWEDMVAGPE 365 (375)
Q Consensus 302 ~~V~er~i~~~eL~~adEvfl~nS~~gv~PV~~i--d~~~i--~~g~~gpvt~~L~~~~~~~i~~g~~ 365 (375)
+|+||+|+++||.+|||+|+|||+.+|+||.+| +|+.+ ++|++||++++|++.|. +||.|..
T Consensus 327 -~V~Er~i~~~eL~~AdEvF~tgTa~~V~PV~~I~~~g~~~~~~~g~~Gpvt~~L~~~l~-~iq~G~~ 392 (403)
T PLN02782 327 -QVEERNVTVDELLEADEVFCTGTAVVVSPVGSITYKGKRVSYGEGGFGTVSQQLYTVLT-SLQMGLI 392 (403)
T ss_pred -eEEEEECCHHHHhhCCEEEEccCcceEEEEEEEEECCEEEeCCCCCcCHHHHHHHHHHH-HHhcCCC
Confidence 999999999999999999999999999999999 99987 88889999999999997 8999976
No 23
>PRK09266 hypothetical protein; Provisional
Probab=100.00 E-value=9.4e-53 Score=401.53 Aligned_cols=256 Identities=18% Similarity=0.160 Sum_probs=224.1
Q ss_pred ceeCCEecCCCCceeCcCCcccccCceeEEeEEEeCCeecCHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhcCC
Q 017245 82 SIFGGIILDPAMMVIPIDDHMVHRGHGVFDTAIILNGYLYELDVHLDRFLRSAVSARISSPFPRSTLRSILVQLTAASQC 161 (375)
Q Consensus 82 ~~~~g~~~~~~~~~lp~~D~~~~yGdgvFET~rv~~G~i~~ld~Hl~RL~~Sa~~l~i~~p~~~e~l~~~I~~li~~~~~ 161 (375)
.|+||++++.+++. ++++||||+||||++++|++++|++|++||.+||+.+++ +|++.+++++.+.++++ ++.
T Consensus 5 ~~~nG~~~~~~~a~-----~~~~~GdgvFETir~~~g~~~~l~~Hl~RL~~sa~~l~~-~~~~~~~l~~~l~~~~~-~~~ 77 (266)
T PRK09266 5 IELNGRPATAEDLA-----ALALANYGHFTSMQVRDGRVRGLDLHLQRLRRASRELFG-AALDDDRVRAQLRAALA-AGP 77 (266)
T ss_pred EEECCEECCHHHhh-----hHhhccceEEEEEEEECCEEcCHHHHHHHHHHHHHHHhC-CCCCHHHHHHHHHHHHh-cCC
Confidence 68999999998876 499999999999999999999999999999999999975 57899999999999984 456
Q ss_pred CCeeEEEEEecCCCCcccCCCCCCCceEEEEEEeCCCCcCCCCeEEEEeeeecCCCCCCCCcccCChHHHHHHHHHHhcC
Q 017245 162 KKGTLRFWLTAGPGDFLLSPAGCPTSAFYAVVIDDDFSQCKEGVKVITSSIPMKPRLFATVKNVNYLPNVLAKMEAEDKG 241 (375)
Q Consensus 162 ~~g~iR~~vs~G~g~~~~~p~~~~~~~~~~~~~~~p~~~~~~Gv~l~~s~~~~~~~~~~~iKt~nyl~~vla~~eA~~~G 241 (375)
++++||+.+++|.|++++.+. ...+.+++.+.+.+ +...+|+++.++++++ ..+++|+.||+.+++++++|+++|
T Consensus 78 ~~~~ir~~v~r~~g~~~~~~~-~~~~~~~i~~~~~~-~~~~~~v~l~~~~~~r---~~~~~K~~~~l~~vla~~~a~~~g 152 (266)
T PRK09266 78 ADASVRVTVFAPDFDFRNPLA-DVAPDVLVATSPPA-DGPAGPLRLQSVPYER---ELPHIKHVGTFGQLHLRRLAQRAG 152 (266)
T ss_pred CcEEEEEEEEecCcccCCCCC-CCCceEEEEEecCC-cCCCCCeEEEEEEecc---cCCCCCCCCcHHHHHHHHHHHHcC
Confidence 789999999998777765333 34556655554322 1235799988877654 356799999999999999999999
Q ss_pred CcEEEEEcCCCcEeeeCCceEEEEEeCCEEEecCCCCccccHHHHHHHHHhhhhhhCCCcceEEEEEcCHHHHhccceEE
Q 017245 242 ASASIWIDEDGYVAEGPNVNVAFITHDKELVLPFFDKILSGCTAKRLLELAPKLVEQGRLKSVKTANLTVDEAKGAAEMM 321 (375)
Q Consensus 242 ~deaL~ld~~G~V~E~s~sNvffv~k~g~l~TP~~~~iL~GiTR~~vlela~~l~~~G~~~~V~er~i~~~eL~~adEvf 321 (375)
+||+|++|++|+|+|++++|+ |++++|+|+||+. ++|+||||+.++++++++ |+ +|+|+.++++||.+|||+|
T Consensus 153 ~de~l~ln~~g~v~E~~~sNl-f~v~~~~l~TP~~-~~L~GItR~~ll~~~~~~---g~--~v~e~~i~~~eL~~adevf 225 (266)
T PRK09266 153 FDDALFVDPDGRVSEGATWNL-GFWDGGAVVWPQA-PALPGVTMALLQRGLERL---GI--PQRTRPVTLADLGRFAGAF 225 (266)
T ss_pred CCeEEEEcCCCcEEEcCceEE-EEEECCEEECCCC-CccchHHHHHHHHHHHHc---CC--eeEEEECCHHHHHHhhHhh
Confidence 999999999999999999999 5568999999995 799999999999999988 97 9999999999999999999
Q ss_pred EEcCccceEEEEEECCeecCCCChhHHHHHHHHHHHH
Q 017245 322 YVGSTLPLLAITVWDEQPIGDGNVGELTMALSDLLWE 358 (375)
Q Consensus 322 l~nS~~gv~PV~~id~~~i~~g~~gpvt~~L~~~~~~ 358 (375)
+|||++||+||.+||++++++| ||++++|++.|++
T Consensus 226 ltnSl~gi~pV~~i~~~~~~~~--~~~~~~l~~~~~~ 260 (266)
T PRK09266 226 ACNAWRGQRAVSAIDDVALPDS--HALLELLRRAYEA 260 (266)
T ss_pred hhcCccceEEEEEECCEECCCC--chHHHHHHHHHHh
Confidence 9999999999999999999764 8999999999963
No 24
>PLN02259 branched-chain-amino-acid aminotransferase 2
Probab=100.00 E-value=1.7e-52 Score=417.60 Aligned_cols=272 Identities=21% Similarity=0.283 Sum_probs=232.5
Q ss_pred ceeCCEecCCCCceeCcCCcccccCceeEEeEEEe---CCee--cCHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Q 017245 82 SIFGGIILDPAMMVIPIDDHMVHRGHGVFDTAIIL---NGYL--YELDVHLDRFLRSAVSARISSPFPRSTLRSILVQLT 156 (375)
Q Consensus 82 ~~~~g~~~~~~~~~lp~~D~~~~yGdgvFET~rv~---~G~i--~~ld~Hl~RL~~Sa~~l~i~~p~~~e~l~~~I~~li 156 (375)
.|.||++++.+.+.|++.||++|||||||||||++ +|++ |++++|++||++||++|+|+.| +.+++.+.|.+++
T Consensus 81 ~w~~g~ivp~~~~~i~~~drgl~YGdgvFEglkayr~~~G~i~lfr~~~h~~RL~~SA~rL~lp~~-~~e~~~~~i~~lv 159 (388)
T PLN02259 81 EFTQGELSPYGNIQLSPSAGVLNYGQAIYEGTKAYRKENGKLLLFRPDHNAIRMKLGAERMLMPSP-SVDQFVNAVKQTA 159 (388)
T ss_pred eEECCEEeEchhCeeCchhhHHHhhhhhhhcEEEEECCCCeEeecCcHHHHHHHHHhHHHhCCCCc-CHHHHHHHHHHHH
Confidence 48999999999999999999999999999999998 8987 8899999999999999999866 9999999999999
Q ss_pred HhcCC-------CCeeEEEEEecCCCCcccCCCCCCCceEEEEEEeCCCCcCCCCeE---EEEe-eeecC-CCCCCCCcc
Q 017245 157 AASQC-------KKGTLRFWLTAGPGDFLLSPAGCPTSAFYAVVIDDDFSQCKEGVK---VITS-SIPMK-PRLFATVKN 224 (375)
Q Consensus 157 ~~~~~-------~~g~iR~~vs~G~g~~~~~p~~~~~~~~~~~~~~~p~~~~~~Gv~---l~~s-~~~~~-~~~~~~iKt 224 (375)
++++. ...+||+++.++.+.++++|. .++.+++++.+.+. .+.+|++ +.++ ++.|. ++.++++|+
T Consensus 160 ~~n~~~vp~~~~~~lyiRp~v~g~~~~lG~~p~--~~~~~~i~~~p~~~-~~~~g~~~i~l~v~~~~~Ra~p~~~g~~K~ 236 (388)
T PLN02259 160 LANKRWVPPAGKGTLYIRPLLMGSGPILGLGPA--PEYTFIVYASPVGN-YFKEGMAALNLYVEEEYVRAAPGGAGGVKS 236 (388)
T ss_pred HhccccCCCCCCceEEEEEEEEecCCccCcCCC--CCcEEEEEEEechh-hhhcCcceEEEEeecceeccCCCCCcccch
Confidence 98874 234889888765444667654 35677766654321 1234554 4433 45554 446799998
Q ss_pred -cCChHHHHHHHHHHhcCCcEEEEEcC--CCcEeeeCCceEEEEEeCCEEEecCCC-CccccHHHHHHHHHhhhhhhCCC
Q 017245 225 -VNYLPNVLAKMEAEDKGASASIWIDE--DGYVAEGPNVNVAFITHDKELVLPFFD-KILSGCTAKRLLELAPKLVEQGR 300 (375)
Q Consensus 225 -~nyl~~vla~~eA~~~G~deaL~ld~--~G~V~E~s~sNvffv~k~g~l~TP~~~-~iL~GiTR~~vlela~~l~~~G~ 300 (375)
+||+++++++++|+++|+||+||+|. +|+|+|++++|+ |++++++|+||+++ +||+||||++|+++|+++ |+
T Consensus 237 ~~NY~~~l~a~~eA~~~G~de~L~Ld~~~~g~V~E~~~sNl-F~v~~~~l~TP~l~~~iL~GITR~sIl~la~~~---G~ 312 (388)
T PLN02259 237 ITNYAPVLKALSRAKSRGFSDVLYLDSVKKKYLEEASSCNV-FVVKGRTISTPATNGTILEGITRKSVMEIASDQ---GY 312 (388)
T ss_pred hhhHHHHHHHHHHHHHcCCCEEEEecCCCCCEEEEcCcEEE-EEEECCEEEcCCCcCCcCcCHHHHHHHHHHHHC---CC
Confidence 59999999999999999999999997 999999999999 55689999999996 799999999999999998 97
Q ss_pred cceEEEEEcCHHHHhccceEEEEcCccceEEEEEECC--e--ecCCCChhHHHHHHHHHHHHHhhcCCC
Q 017245 301 LKSVKTANLTVDEAKGAAEMMYVGSTLPLLAITVWDE--Q--PIGDGNVGELTMALSDLLWEDMVAGPE 365 (375)
Q Consensus 301 ~~~V~er~i~~~eL~~adEvfl~nS~~gv~PV~~id~--~--~i~~g~~gpvt~~L~~~~~~~i~~g~~ 365 (375)
+|+||+++++||.+|||+|+|||+.+|+||.+|+. + .++.+ .||++++|+++|. +||.|..
T Consensus 313 --~V~Er~i~~~eL~~AdEvF~tgTa~~V~PV~~I~~~~~~~~~~~~-~g~~t~~L~~~l~-~iq~G~~ 377 (388)
T PLN02259 313 --QVVEKAVHVDEVMDADEVFCTGTAVVVAPVGTITYQEKRVEYKTG-DESVCQKLRSVLV-GIQTGLI 377 (388)
T ss_pred --eEEEEECCHHHHHhCCEEEEcCCcceEEEEEEEecCCceEEeCCC-CCHHHHHHHHHHH-HHHcCCC
Confidence 99999999999999999999999999999999985 3 36654 5899999999998 9999976
No 25
>COG0115 IlvE Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=100.00 E-value=1e-50 Score=391.13 Aligned_cols=271 Identities=31% Similarity=0.430 Sum_probs=233.7
Q ss_pred ceeCCEecCCCCceeCcCCcccccCceeEEeEEEeCCeecCHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhcCC
Q 017245 82 SIFGGIILDPAMMVIPIDDHMVHRGHGVFDTAIILNGYLYELDVHLDRFLRSAVSARISSPFPRSTLRSILVQLTAASQC 161 (375)
Q Consensus 82 ~~~~g~~~~~~~~~lp~~D~~~~yGdgvFET~rv~~G~i~~ld~Hl~RL~~Sa~~l~i~~p~~~e~l~~~I~~li~~~~~ 161 (375)
.|+||++++...+.+++.||++|||+|+|||+++++|++|+|++|++||++||+.|+++.|.+.+++......+++.++.
T Consensus 4 ~~~~g~~~~~~~~~~~~~~~~~~~g~~vFE~~r~~~g~~~~l~~H~~RL~~Sa~~l~~~~~~~~~~~~~~~~~~~~~~~~ 83 (284)
T COG0115 4 IWVNGELVPEEDAKLSVLDRGLHYGDGVFETLRAYNGKLFRLDEHLARLKRSAKRLGLPRPESEEEIELLIQLLLAKNNL 83 (284)
T ss_pred EeECCEEccCcccccCcccceeccccceeEEEEEeCCcccChHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhhCC
Confidence 58899999999999999999999999999999999999999999999999999999999999999999999999888876
Q ss_pred CC-eeEEEEEecCCCCcccCCCCCCCceEEEEEEeCCCC-c---CCCCeEEEEee-eecCCC-CCCCCcccCChHHHHHH
Q 017245 162 KK-GTLRFWLTAGPGDFLLSPAGCPTSAFYAVVIDDDFS-Q---CKEGVKVITSS-IPMKPR-LFATVKNVNYLPNVLAK 234 (375)
Q Consensus 162 ~~-g~iR~~vs~G~g~~~~~p~~~~~~~~~~~~~~~p~~-~---~~~Gv~l~~s~-~~~~~~-~~~~iKt~nyl~~vla~ 234 (375)
.. .++|+.+..+.+..+..+ +..+.+.+.+.+.+.. . ..+|+...+++ +++.++ ....+|++||+.+++++
T Consensus 84 ~~~~y~r~~~~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~k~~~y~~~~~a~ 161 (284)
T COG0115 84 VPGLYIRPLVRGGGGGLGVRD--ATEPTLIVAASPVGAYLKGGRLEKGVVLVISSPVRRAPPGPGAAKKTGNYLSSVLAK 161 (284)
T ss_pred CCceEEEEEEEeecCCCCcCC--CCccEEEEEEEecccccCcccccCCeEEEEeehhhccCCCcchhhhhcccHHHHHHH
Confidence 65 577777776666666555 3456666666554321 1 13577766653 333333 24568899999999999
Q ss_pred HHHHhcCCcEEEEEcCCCcEeeeCCceEEEEEeCCEEEecCCC-CccccHHHHHHHHHhhhhhhCCCcceEEEEEcCHHH
Q 017245 235 MEAEDKGASASIWIDEDGYVAEGPNVNVAFITHDKELVLPFFD-KILSGCTAKRLLELAPKLVEQGRLKSVKTANLTVDE 313 (375)
Q Consensus 235 ~eA~~~G~deaL~ld~~G~V~E~s~sNvffv~k~g~l~TP~~~-~iL~GiTR~~vlela~~l~~~G~~~~V~er~i~~~e 313 (375)
++|+++|+||+|++|.+|+|+|++++|+||+..||+++||+++ ++|+||||+.+|++|+++ |+ +|+|++|+.+|
T Consensus 162 ~~A~~~G~~eal~~~~~G~V~Eg~~sNvf~v~~dg~~~TP~~~~~iL~GitR~~li~la~~~---G~--~v~E~~i~~~~ 236 (284)
T COG0115 162 REAKAAGADEALLLDEDGYVTEGAGSNVFFVKGDGVLVTPPLSGGILPGITRDSLLELAKEL---GL--TVEERPITLED 236 (284)
T ss_pred HHHHHCCCCEEEEecCCCeEEEcCcceEEEEEECCEEECCCCCCCccccHHHHHHHHHHHHc---Cc--eEEEeecCHHH
Confidence 9999999999999999999999999999665448999999996 799999999999999987 97 99999999999
Q ss_pred HhccceEEEEcCccceEEEEEECCeecCCCChhHHHHHHHHHHHHHhhcC
Q 017245 314 AKGAAEMMYVGSTLPLLAITVWDEQPIGDGNVGELTMALSDLLWEDMVAG 363 (375)
Q Consensus 314 L~~adEvfl~nS~~gv~PV~~id~~~i~~g~~gpvt~~L~~~~~~~i~~g 363 (375)
|.+|||+|+|||+++|+||.++|++ . +++||+|++|+++|. +++.+
T Consensus 237 l~~adevf~t~t~~~v~PV~~i~~~-~--~~~gpit~~l~~~~~-~~~~~ 282 (284)
T COG0115 237 LKQADEVFLTNTAAGVTPVGLIDGR-V--GQPGPVTKKLRELLT-DIQYG 282 (284)
T ss_pred HhhCCEEEEEccceEEEEEEEECCc-c--CCCChHHHHHHHHHH-HHhcc
Confidence 9999999999999999999999888 4 789999999999998 66665
No 26
>PLN02883 Branched-chain amino acid aminotransferase
Probab=100.00 E-value=7.9e-51 Score=404.83 Aligned_cols=269 Identities=20% Similarity=0.267 Sum_probs=227.5
Q ss_pred eeCCEecCCCCceeCcCCcccccCceeEEeEEEe---CCee--cCHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH
Q 017245 83 IFGGIILDPAMMVIPIDDHMVHRGHGVFDTAIIL---NGYL--YELDVHLDRFLRSAVSARISSPFPRSTLRSILVQLTA 157 (375)
Q Consensus 83 ~~~g~~~~~~~~~lp~~D~~~~yGdgvFET~rv~---~G~i--~~ld~Hl~RL~~Sa~~l~i~~p~~~e~l~~~I~~li~ 157 (375)
|.++++++-....|++.|+++|||||||||||++ +|++ |++++|++||.+||++|+|+.| +.+++.++|.++++
T Consensus 78 w~~~~i~p~~~l~l~p~a~~l~YGdgvFEg~kayr~~dG~i~lfr~~~h~~RL~~SA~rL~lp~~-~~e~~~~~i~~lv~ 156 (384)
T PLN02883 78 FEQGYLSRYGNIELNPAAGILNYGQGLIEGMKAYRGEDGRILLFRPELNAMRMKIGAERMCMHSP-SVHQFIEGVKQTVL 156 (384)
T ss_pred ccCCeEeeCCCcccCccccHhhcceeeeeeEEEEECCCCCEeeeChhHHHHHHHHHHHHhCCCCc-CHHHHHHHHHHHHH
Confidence 6677777777888888999999999999999998 6765 5889999999999999999866 99999999999999
Q ss_pred hcCC-------CCeeEEEEEecCCCCcccCCCCCCCceEEEEEEeCCCCcCCC---CeEEEEeee-ecC-CCCCCCCccc
Q 017245 158 ASQC-------KKGTLRFWLTAGPGDFLLSPAGCPTSAFYAVVIDDDFSQCKE---GVKVITSSI-PMK-PRLFATVKNV 225 (375)
Q Consensus 158 ~~~~-------~~g~iR~~vs~G~g~~~~~p~~~~~~~~~~~~~~~p~~~~~~---Gv~l~~s~~-~~~-~~~~~~iKt~ 225 (375)
.++. ...|||+.++++.+.+++.+. .++.+++++.+.+.. +.+ ++++..++. ++. ++.++++|++
T Consensus 157 ~n~~wvp~~~~~~lYIRp~v~~~~~~lG~~~~--~~~~~~i~~~p~~~y-~~~g~~~v~l~~~~~~~Ra~~~g~g~~K~~ 233 (384)
T PLN02883 157 ANRRWVPPPGKGSLYLRPLLFGSGASLGVAAA--PEYTFLVFGSPVQNY-FKEGTAALNLYVEEVIPRAYLGGTGGVKAI 233 (384)
T ss_pred hccccCCCCCCceEEEEEEEEecCCccCCCCC--CCeEEEEEEEecccc-cccCcceEEEEECccccccCCCCCcccchh
Confidence 9864 345899999998776777654 356777666543311 223 455655543 453 5578999976
Q ss_pred -CChHHHHHHHHHHhcCCcEEEEEcCC--CcEeeeCCceEEEEEeCCEEEecCCC-CccccHHHHHHHHHhhhhhhCCCc
Q 017245 226 -NYLPNVLAKMEAEDKGASASIWIDED--GYVAEGPNVNVAFITHDKELVLPFFD-KILSGCTAKRLLELAPKLVEQGRL 301 (375)
Q Consensus 226 -nyl~~vla~~eA~~~G~deaL~ld~~--G~V~E~s~sNvffv~k~g~l~TP~~~-~iL~GiTR~~vlela~~l~~~G~~ 301 (375)
||+++++++++|+++||||+||+|.+ |+|+|++++|+| ++++++|+||+++ +||+||||++||++|+++ |+
T Consensus 234 ~nYa~~lla~~eA~~~G~de~L~Ld~~~~~~V~E~~~sNlF-~v~~~~l~TP~l~~~iLpGITR~svl~la~~~---G~- 308 (384)
T PLN02883 234 SNYGPVLEVMRRAKSRGFSDVLYLDADTGKNIEEVSAANIF-LVKGNIIVTPATSGTILGGITRKSIIEIALDL---GY- 308 (384)
T ss_pred hhHHHHHHHHHHHHHCCCCEEEEEeCCCCCEEEEcCcEEEE-EEECCEEEeCCCcCCcCcCHHHHHHHHHHHHC---CC-
Confidence 89999999999999999999999964 699999999995 5589999999996 799999999999999998 97
Q ss_pred ceEEEEEcCHHHHhccceEEEEcCccceEEEEEECCe------ecCCCChhHHHHHHHHHHHHHhhcCCC
Q 017245 302 KSVKTANLTVDEAKGAAEMMYVGSTLPLLAITVWDEQ------PIGDGNVGELTMALSDLLWEDMVAGPE 365 (375)
Q Consensus 302 ~~V~er~i~~~eL~~adEvfl~nS~~gv~PV~~id~~------~i~~g~~gpvt~~L~~~~~~~i~~g~~ 365 (375)
+|+||+|+++||.+|||+|+|||+.+|+||.+|+++ +++ .||++++|++.|. +||.|..
T Consensus 309 -~V~Er~i~~~eL~~AdEvF~tgTa~~I~PV~~I~~~~~~~~~~~~---~G~vt~~L~~~l~-~iq~G~~ 373 (384)
T PLN02883 309 -KVEERRVPVEELKEAEEVFCTGTAAGVASVGSITFKNTRTEYKVG---DGIVTQQLRSILL-GIQTGSI 373 (384)
T ss_pred -eEEEEECCHHHHHhCCEeeeccChhheEEEEEEeccCceeecccC---CCHHHHHHHHHHH-HHHcCCC
Confidence 999999999999999999999999999999999844 443 3899999999997 9999976
No 27
>KOG0975 consensus Branched chain aminotransferase BCAT1, pyridoxal phosphate enzymes type IV superfamily [Amino acid transport and metabolism]
Probab=100.00 E-value=4.3e-48 Score=372.57 Aligned_cols=285 Identities=34% Similarity=0.488 Sum_probs=231.2
Q ss_pred HHHHHHHh-ccCCcccccccccccceeCCEecCCCCceeCcCCcccccCceeEEeEEEeCC-----eecCHHHHHHHHHH
Q 017245 59 ELLQKLQE-KWSSVKKKPYPAMYSSIFGGIILDPAMMVIPIDDHMVHRGHGVFDTAIILNG-----YLYELDVHLDRFLR 132 (375)
Q Consensus 59 ~~~~~l~~-~~~~~~~~~~~~~y~~~~~g~~~~~~~~~lp~~D~~~~yGdgvFET~rv~~G-----~i~~ld~Hl~RL~~ 132 (375)
...|++.. +|... . |.+.+.+-++++.++|+++++ |||+|+||+|+++++ ++|++++|+.||.+
T Consensus 55 ~~td~m~~~k~~~~--g-w~~~~I~p~gni~~~Paa~vl-------hy~~~lfEG~KAyRt~d~~i~LFrPd~N~~Rm~~ 124 (379)
T KOG0975|consen 55 VFTDHMLTIKWSED--G-WSQGEISPFGNLSLHPAAKVL-------HYGQGLFEGLKAYRTEDGKIRLFRPDQNMDRMLR 124 (379)
T ss_pred cccceeEEEecccc--C-cCCCCccCcCCEeeChhhhce-------ecchhhccccccccCCCCeEEEecchhhHHHHHh
Confidence 34455554 55511 2 555555555999999999998 999999999999754 79999999999999
Q ss_pred HHHHcCCCCCCCHHHHHHHHHHHHHhcCC-----CCe--eEEEEEecCCCCcccCCCCCCCceEEEEEEeCCCCcC----
Q 017245 133 SAVSARISSPFPRSTLRSILVQLTAASQC-----KKG--TLRFWLTAGPGDFLLSPAGCPTSAFYAVVIDDDFSQC---- 201 (375)
Q Consensus 133 Sa~~l~i~~p~~~e~l~~~I~~li~~~~~-----~~g--~iR~~vs~G~g~~~~~p~~~~~~~~~~~~~~~p~~~~---- 201 (375)
||.++.|+. ++.+++.++|.+++.+++. ..+ |+|..+-.+ +..+....++++.+|+++. |..++
T Consensus 125 sA~r~~lP~-p~~~e~ie~i~~lv~~~~~wVP~~~~~SLyirp~l~Gt--~~~Lgv~~~~e~~l~vi~s--pvg~yf~~g 199 (379)
T KOG0975|consen 125 SAERACLPS-PDVEEFIEAIKQLVLADKEWVPPPGKGSLYIRPLLIGT--DPVLGVSPAPEATLFVIVS--PVGPYFKSG 199 (379)
T ss_pred hhhhccCCC-CCHHHHHHHHHHHHHhcCcccCCCCCceEEEeeeeccC--CcccccccCCcceEEEEEc--ccchhcccc
Confidence 999999974 6889999999999988763 344 455555443 3344444567888988775 44332
Q ss_pred CCCeEEEEe--eeecCCCCCCCCc-ccCChHHHHHHHHHHhcCCcEEEEEcCCC-cEeeeCCceEEEEEeCCE--EEecC
Q 017245 202 KEGVKVITS--SIPMKPRLFATVK-NVNYLPNVLAKMEAEDKGASASIWIDEDG-YVAEGPNVNVAFITHDKE--LVLPF 275 (375)
Q Consensus 202 ~~Gv~l~~s--~~~~~~~~~~~iK-t~nyl~~vla~~eA~~~G~deaL~ld~~G-~V~E~s~sNvffv~k~g~--l~TP~ 275 (375)
.+|+.+... .++..++.+++.| ++||+|++++..||+.+||+++||+|.++ +|+|++++||||+ ++|+ ++||+
T Consensus 200 ~~~v~L~v~~~~~Ra~pgg~g~~k~~~NY~P~vl~q~eA~~~G~~dvLwL~~d~~~ItEv~tmNiF~v-~~n~~elvTPp 278 (379)
T KOG0975|consen 200 FKGVNLLVDPEFVRAWPGGTGGVKLGGNYAPNVLAQKEAKSKGASDVLWLDGDGGYITEVGTMNIFMV-KKNEDELVTPP 278 (379)
T ss_pred ccceEEEEecceeecCCCCCCceeeccccchHHHHHHHHHhcCcceeEEEecCCCceeeccceeEEEE-EcCceeEecCC
Confidence 456666544 2333567888888 89999999999999999999999999866 9999999999665 5655 99999
Q ss_pred CCC-ccccHHHHHHHHHhhhhhhCC-CcceEEEEEcCHHHHhccceEEEEcCccceEEEEEE---C----CeecCCCChh
Q 017245 276 FDK-ILSGCTAKRLLELAPKLVEQG-RLKSVKTANLTVDEAKGAAEMMYVGSTLPLLAITVW---D----EQPIGDGNVG 346 (375)
Q Consensus 276 ~~~-iL~GiTR~~vlela~~l~~~G-~~~~V~er~i~~~eL~~adEvfl~nS~~gv~PV~~i---d----~~~i~~g~~g 346 (375)
+|| |||||||++++|+|+++ | + +|+||.++++|+.+|+|+|.|||+..|.||..| | ...+++|+.|
T Consensus 279 ~dg~ILpGvTR~sileLa~~~---g~~--~V~Er~vtv~e~~~A~Evf~tGTA~~v~pV~~i~~~~~~i~~~~~~~g~~g 353 (379)
T KOG0975|consen 279 LDGTILPGVTRKSILELARDL---GEF--KVEERDVTVDELKTADEVFCTGTAAVVSPVGSILYKDEKIHIPTIGEGKEG 353 (379)
T ss_pred CCCcccCCccHHHHHHHHHHh---Cce--EEEEEEEeHHHhhhhHhhhcccceeeeccccceeecccccceeecCCCCcc
Confidence 994 99999999999999998 7 6 999999999999999999999999999999765 3 4568899999
Q ss_pred HHHHHHHHHHHHHhhcCCC
Q 017245 347 ELTMALSDLLWEDMVAGPE 365 (375)
Q Consensus 347 pvt~~L~~~~~~~i~~g~~ 365 (375)
|++++|++.|. +||.|..
T Consensus 354 ~l~~~l~~~l~-~iq~g~~ 371 (379)
T KOG0975|consen 354 PLAKKLLSTLT-DIQYGRE 371 (379)
T ss_pred HHHHHHHHHHH-HhhcCCc
Confidence 99999999998 8999954
No 28
>PF01063 Aminotran_4: Aminotransferase class IV; InterPro: IPR001544 Aminotransferases share certain mechanistic features with other pyridoxal-phosphate dependent enzymes, such as the covalent binding of the pyridoxal-phosphate group to a lysine residue. On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. One of these, called class-IV, currently consists of proteins of about 270 to 415 amino-acid residues that share a few regions of sequence similarity. Surprisingly, the best conserved region does not include the lysine residue to which the pyridoxal-phosphate group is known to be attached, in ilvE, but is located some 40 residues at the C terminus side of the pyridoxal-phosphate-lysine. The D-amino acid transferases (D-AAT), which are among the members of this entry, are required by bacteria to catalyse the synthesis of D-glutamic acid and D-alanine, which are essential constituents of bacterial cell wall and are the building block for other D-amino acids. Despite the difference in the structure of the substrates, D-AATs and L-ATTs have strong similarity [, ]. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1EKV_A 2HGX_A 1EKP_A 1KTA_B 1KT8_B 2A1H_B 2HDK_A 2HGW_B 1EKF_B 2HG8_A ....
Probab=100.00 E-value=6.6e-43 Score=325.32 Aligned_cols=224 Identities=34% Similarity=0.479 Sum_probs=178.3
Q ss_pred cCHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhcC-CCCeeEEEEEecCCCCcccCCCCCCCceEEEEEEeCCCC
Q 017245 121 YELDVHLDRFLRSAVSARISSPFPRSTLRSILVQLTAASQ-CKKGTLRFWLTAGPGDFLLSPAGCPTSAFYAVVIDDDFS 199 (375)
Q Consensus 121 ~~ld~Hl~RL~~Sa~~l~i~~p~~~e~l~~~I~~li~~~~-~~~g~iR~~vs~G~g~~~~~p~~~~~~~~~~~~~~~p~~ 199 (375)
|+|++|++||.+||+.+ +..+++.+++++.+.++++.++ ..++++|+++++|.+.++..+..+..+... ....+..
T Consensus 1 f~l~~Hl~Rl~~S~~~l-~~~~~~~~~l~~~i~~~~~~~~~~~~~~ir~~v~~g~~~~~~~~~~~~~~~~~--~~~~~~~ 77 (231)
T PF01063_consen 1 FFLDEHLERLRRSARAL-IGLPFSREELREIIQELLEANPDQGEGYIRITVTRGGGPLGGSPPENSAPPPF--SIAPPRR 77 (231)
T ss_dssp ETHHHHHHHHHHHHHHT-TTHSSHHHHHHHHHHHHHHHTTSSSSEEEEEEEEETSSSSSSSECSEEEEEEE--EEETCHH
T ss_pred CCHHHHHHHHHHHHHHH-ccCCcCHHHHHHHHHHHHHHcCCCCCcEEEEEEEcCCCCcCccCccccccccc--ccccccc
Confidence 68999999999999999 7778999999999999999988 778899999999987765554432222111 1111111
Q ss_pred c--CCCC-eEEEEeeeec-CCCCCCCCcccCChHHHH-HHHHHHhcCCcEEEEEcCCCcEeeeCCceEEEEEeCCEEEec
Q 017245 200 Q--CKEG-VKVITSSIPM-KPRLFATVKNVNYLPNVL-AKMEAEDKGASASIWIDEDGYVAEGPNVNVAFITHDKELVLP 274 (375)
Q Consensus 200 ~--~~~G-v~l~~s~~~~-~~~~~~~iKt~nyl~~vl-a~~eA~~~G~deaL~ld~~G~V~E~s~sNvffv~k~g~l~TP 274 (375)
. .... ..+.....+. ..+.++++|+.||+.+++ +.++|+++|+||+|++|++|+|+|++++|| |+++||+|+||
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Kt~~~~~~~~~~~~~a~~~g~de~ll~d~~G~v~E~~~sNi-f~~~~~~~~TP 156 (231)
T PF01063_consen 78 PPPPLVGSVGVRRASPPLPRPNPLPRHKTTNRLANVLAALRAAREKGADEALLLDEDGNVTEGSTSNI-FFVKDGTLYTP 156 (231)
T ss_dssp HHEEEEEECSEECETTTSE-TTTSTTS-BSHHHHHHHHHHHHHHHTTSSEEEEEETTSBEEEESSSEE-EEEETTEEEEE
T ss_pred CCcceeeeeeEEeccccccccCCCCCeeECCcchhhHHHHHHHHhcCcchhheecCCCCcCCCCCccc-ccccCCEEEcC
Confidence 1 0001 1111111111 122478999999999999 666677999999999999999999999999 56699999999
Q ss_pred CCC-CccccHHHHHHHHHhhhhhhCCCcceEEEEEcCHHHHhccceEEEEcCccceEEEEEECCeecCCCChhHHHHHHH
Q 017245 275 FFD-KILSGCTAKRLLELAPKLVEQGRLKSVKTANLTVDEAKGAAEMMYVGSTLPLLAITVWDEQPIGDGNVGELTMALS 353 (375)
Q Consensus 275 ~~~-~iL~GiTR~~vlela~~l~~~G~~~~V~er~i~~~eL~~adEvfl~nS~~gv~PV~~id~~~i~~g~~gpvt~~L~ 353 (375)
+.+ |+|+||||+.++++++++ |+ +|+|+.++++||.+|||+|+|||++||+||.+||++.++ +||++++|+
T Consensus 157 ~~~~giL~Gitr~~ll~~~~~~---g~--~v~e~~i~~~~L~~ade~fl~ns~~gi~pV~~i~~~~~~---~~p~~~~L~ 228 (231)
T PF01063_consen 157 PLDSGILPGITRQLLLELAKEL---GI--PVEERPITLDDLQQADEVFLTNSLRGIRPVKSIDGRSFG---PGPITRRLQ 228 (231)
T ss_dssp SGSSSSB--HHHHHHHHHHHHT---TS--EEEEE-BBHHHHHTHSEEEEEETTTEEEEEEEETTEEST---THHHHHHHH
T ss_pred ChhhhhccHHHHHHHHHHHHhC---CC--CcEEEEeCHHHhhhhhheEEecchhhEEEEEEECCEECC---CCHHHHHHH
Confidence 996 699999999999999998 97 999999999999999999999999999999999999997 799999999
Q ss_pred HHH
Q 017245 354 DLL 356 (375)
Q Consensus 354 ~~~ 356 (375)
++|
T Consensus 229 ~~~ 231 (231)
T PF01063_consen 229 EAY 231 (231)
T ss_dssp HHH
T ss_pred HhC
Confidence 986
No 29
>PRK07546 hypothetical protein; Provisional
Probab=100.00 E-value=1.5e-40 Score=306.90 Aligned_cols=202 Identities=22% Similarity=0.222 Sum_probs=169.7
Q ss_pred ceeEEeEEEe-CCeecCHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhcCCCCeeEEEEEecCCCCcccCCCCCC
Q 017245 107 HGVFDTAIIL-NGYLYELDVHLDRFLRSAVSARISSPFPRSTLRSILVQLTAASQCKKGTLRFWLTAGPGDFLLSPAGCP 185 (375)
Q Consensus 107 dgvFET~rv~-~G~i~~ld~Hl~RL~~Sa~~l~i~~p~~~e~l~~~I~~li~~~~~~~g~iR~~vs~G~g~~~~~p~~~~ 185 (375)
.++||||++. +|++++|++|++||.+||+.|+++. +.+++++.+.++++++ ...+.+|+.+++| |.
T Consensus 4 ~~lfETi~~~~~G~~~~l~~Hl~RL~~sa~~l~~~~--~~~~l~~~l~~~~~~~-~~~~~vrl~~~~~-g~--------- 70 (209)
T PRK07546 4 FELIETLRWEPGAGFPRLDRHLARLERSARALGFPC--DPAAVRAKLAEAVAGA-QGPLRLRLTLARD-GR--------- 70 (209)
T ss_pred ccEEEEEEEeCCCCcccHHHHHHHHHHHHHHhCCCC--CHHHHHHHHHHHhhcc-CCCeEEEEEEcCC-CC---------
Confidence 3699999999 9999999999999999999999854 5788999999988763 3567889988876 32
Q ss_pred CceEEEEEEeCCCCcCCCCeEEEEeeeecC-CCCCCCCcccCChHHHHHHHHHHhcCCcEEEEEcCCCcEeeeCCceEEE
Q 017245 186 TSAFYAVVIDDDFSQCKEGVKVITSSIPMK-PRLFATVKNVNYLPNVLAKMEAEDKGASASIWIDEDGYVAEGPNVNVAF 264 (375)
Q Consensus 186 ~~~~~~~~~~~p~~~~~~Gv~l~~s~~~~~-~~~~~~iKt~nyl~~vla~~eA~~~G~deaL~ld~~G~V~E~s~sNvff 264 (375)
+++.+.+.+..+...++++.++..++. ++.+.++||.||+.+++++++|+++|+||+|++|++|+|+||+++|+ |
T Consensus 71 ---~~i~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~Kt~nr~~~v~a~~~a~~~g~de~l~l~~~G~v~E~s~~Ni-~ 146 (209)
T PRK07546 71 ---LTVETAPLPPLPPDTVWRVAIARTRLDSADPLLRYKTTRRAAYDAARAELPPAEADEVILLNERGEVCEGTITNV-F 146 (209)
T ss_pred ---EEEEEecCCCCCCCCcEEEEEcCcccCCCCcchhcccCChHHHHHHHHHHhhCCCCEEEEECCCCcEEEcCceeE-E
Confidence 223333332222345677777666654 34577899999999999999999999999999999999999999999 5
Q ss_pred EEeCCEEE-ecCCC-CccccHHHHHHHHHhhhhhhCCCcceEEEEEcCHHHHhccceEEEEcCccceEEEEEE
Q 017245 265 ITHDKELV-LPFFD-KILSGCTAKRLLELAPKLVEQGRLKSVKTANLTVDEAKGAAEMMYVGSTLPLLAITVW 335 (375)
Q Consensus 265 v~k~g~l~-TP~~~-~iL~GiTR~~vlela~~l~~~G~~~~V~er~i~~~eL~~adEvfl~nS~~gv~PV~~i 335 (375)
++++|+|+ ||+++ |+|+||||+.+++. + +|+|+.++++||.+|||+|+|||++||+||..|
T Consensus 147 ~~~~~~~~~TP~~~~g~L~Gi~R~~ll~~-------~---~v~e~~i~~~~L~~adevfl~NSl~gv~pV~~~ 209 (209)
T PRK07546 147 LDRGGGMLTTPPLSCGLLPGVLRAELLDA-------G---RAREAVLTVDDLKSARAIWVGNSLRGLIRAELI 209 (209)
T ss_pred EEECCEEEECCCCcCCCCccHHHHHHHhh-------C---CeEEEEcCHHHHhhCCEEEEEccceeEEEEEEC
Confidence 56899999 99996 79999999999983 2 699999999999999999999999999999864
No 30
>PRK07101 hypothetical protein; Provisional
Probab=100.00 E-value=5.6e-33 Score=252.27 Aligned_cols=183 Identities=18% Similarity=0.235 Sum_probs=144.1
Q ss_pred eeEEeEEEeCCeecCHHHHHHHHHHHHHHcCCCC-CCCHHHHHHHHHHHHHhcCCCCeeEEEEEecCCCCcccCCCCCCC
Q 017245 108 GVFDTAIILNGYLYELDVHLDRFLRSAVSARISS-PFPRSTLRSILVQLTAASQCKKGTLRFWLTAGPGDFLLSPAGCPT 186 (375)
Q Consensus 108 gvFET~rv~~G~i~~ld~Hl~RL~~Sa~~l~i~~-p~~~e~l~~~I~~li~~~~~~~g~iR~~vs~G~g~~~~~p~~~~~ 186 (375)
++||||++++|++++|++|++||.+||+.+++.. |++.+++.+.+.++ .++.+|+.++++.|.+.+...
T Consensus 4 ~l~ETir~~~g~~~~l~~Hl~RL~~Sa~~l~~~~~~~~~~~~~~~~~~~------~~~~~r~rl~~~~g~~~~~~~---- 73 (187)
T PRK07101 4 PLFETIAIEDGEIQNLSYHQQRYERTLAEFYGKEAPFDLAEIIQPPTEL------QEGLVRCRIDYNAEIYQVQYF---- 73 (187)
T ss_pred cceEEEeeeCCeeccHHHHHHHHHHHHHHHcccCCcccHHHHhhchhhh------cCCCEEEEEEecCCcEEEEEE----
Confidence 5999999999999999999999999999998866 88999888887654 245567777776664333211
Q ss_pred ceEEEEEEeCCCCcCCCCeEEEEeeeecCCCCCCCCcccCChHHHHHHHHHHhcCCcEEEEEcCCCcEeeeCCceEEEEE
Q 017245 187 SAFYAVVIDDDFSQCKEGVKVITSSIPMKPRLFATVKNVNYLPNVLAKMEAEDKGASASIWIDEDGYVAEGPNVNVAFIT 266 (375)
Q Consensus 187 ~~~~~~~~~~p~~~~~~Gv~l~~s~~~~~~~~~~~iKt~nyl~~vla~~eA~~~G~deaL~ld~~G~V~E~s~sNvffv~ 266 (375)
+.+. ...+|+++..++. ...++|+.||. .+....|++.|+||+|++| +|+|+||+++|+ |++
T Consensus 74 --------~~~~-~~~~~~~~~~~~~-----~~~~~Kt~~r~--~~~~~~a~~~g~de~l~~~-~G~v~E~~~sNi-~~~ 135 (187)
T PRK07101 74 --------PYQR-RPIRSFQPVYCDD-----IDYSLKYTDRS--ALNELFAQKGECDEIIIIK-NGLVTDTSIGNL-AFF 135 (187)
T ss_pred --------cCCC-CCcCceEEEecCC-----cccccccCCHH--HHHHHHHHhCCCCEEEEEc-CCEEEEccceEE-EEE
Confidence 1111 1234777754432 23478999873 3444555678999999998 899999999999 556
Q ss_pred eCCEEEecCCCCccccHHHHHHHHHhhhhhhCCCcceEEEEEcCHHHHhccceEEEEcCccce
Q 017245 267 HDKELVLPFFDKILSGCTAKRLLELAPKLVEQGRLKSVKTANLTVDEAKGAAEMMYVGSTLPL 329 (375)
Q Consensus 267 k~g~l~TP~~~~iL~GiTR~~vlela~~l~~~G~~~~V~er~i~~~eL~~adEvfl~nS~~gv 329 (375)
+||+|+||+ .++|+||||+.+++. | +|+|+.|+++||.+|||+|++||++|.
T Consensus 136 ~~~~~~TP~-~~~L~Gi~R~~ll~~-------~---~v~e~~i~~~~L~~ad~~~~~nsl~G~ 187 (187)
T PRK07101 136 DGKQWFTPK-KPLLKGTQRARLLDE-------G---KIKEKDITVEDLLQYEEIRLINAMNGF 187 (187)
T ss_pred ECCEEEcCC-CCCccHHHHHHHHcc-------C---CEEEEecCHHHHhcCCEEEEEecccCC
Confidence 899999999 589999999999972 5 699999999999999999999999874
No 31
>PF08222 HTH_CodY: CodY helix-turn-helix domain; InterPro: IPR013198 This family consists of the C-terminal helix-turn-helix domain found in several bacterial GTP-sensing transcriptional pleiotropic repressor CodY proteins. CodY has been found to repress the dipeptide transport operon (dpp) of Bacillus subtilis in nutrient-rich conditions []. The CodY protein also has a repressor effect on many genes in Lactococcus lactis during growth in milk [].; PDB: 2B0L_C.
Probab=27.97 E-value=87 Score=23.08 Aligned_cols=26 Identities=23% Similarity=0.344 Sum_probs=19.9
Q ss_pred ccHHHHHHHHHhhhhhhCCCcceEEEEEc
Q 017245 281 SGCTAKRLLELAPKLVEQGRLKSVKTANL 309 (375)
Q Consensus 281 ~GiTR~~vlela~~l~~~G~~~~V~er~i 309 (375)
-|+||..+....+++..+|+ ++.|..
T Consensus 14 ~GiTRSvIVNALRKleSaGv---IesrSl 39 (61)
T PF08222_consen 14 VGITRSVIVNALRKLESAGV---IESRSL 39 (61)
T ss_dssp HT--HHHHHHHHHHHHHTTS---EEEEET
T ss_pred hCccHHHHHHHHHHHHhcCc---eeeccc
Confidence 58999999999999887886 777765
No 32
>PF14347 DUF4399: Domain of unknown function (DUF4399)
Probab=26.63 E-value=54 Score=26.02 Aligned_cols=39 Identities=23% Similarity=0.171 Sum_probs=30.3
Q ss_pred ccceeCCEecCCCCceeCcCCcccccCceeEEeE-EEeCC
Q 017245 80 YSSIFGGIILDPAMMVIPIDDHMVHRGHGVFDTA-IILNG 118 (375)
Q Consensus 80 y~~~~~g~~~~~~~~~lp~~D~~~~yGdgvFET~-rv~~G 118 (375)
+--.+|+...+.....||.++.++|||+|.=|+. ...-|
T Consensus 23 ~hlliD~~~~~~~~~~I~~~~n~vhy~~Gqte~~I~L~PG 62 (87)
T PF14347_consen 23 HHLLIDGDGPPLANEPIPFNINGVHYGKGQTELNIELPPG 62 (87)
T ss_pred EEEEECCCCCcCCCCeeeecCCeEEeCCCEEEEEEEeCCC
Confidence 3345788888778888999999999999998864 34444
No 33
>TIGR03042 PS_II_psbQ_bact photosystem II protein PsbQ. This protein through the member sll1638 from Synechocystis sp. PCC 6803, was shown to be part of the cyanobacteria photosystem II. It is homologous to (but quite diverged from) the chloroplast PsbQ protein, called oxygen-evolving enhancer protein 3 (OEE3). We designate this cyanobacteria protein PsbQ by homology.
Probab=22.73 E-value=76 Score=27.69 Aligned_cols=14 Identities=43% Similarity=0.496 Sum_probs=10.5
Q ss_pred hhhhhhhccccccc
Q 017245 30 CLKFCVSCLFSVEA 43 (375)
Q Consensus 30 ~~~~~~~~~~~~~~ 43 (375)
-+-|+|+|+.++..
T Consensus 12 ~~~~Lvsc~~p~~~ 25 (142)
T TIGR03042 12 LLTFLVSCSGPAAA 25 (142)
T ss_pred HHHHHHHcCCCccc
Confidence 44569999998853
No 34
>COG3958 Transketolase, C-terminal subunit [Carbohydrate transport and metabolism]
Probab=22.29 E-value=86 Score=30.73 Aligned_cols=100 Identities=24% Similarity=0.222 Sum_probs=65.9
Q ss_pred cEEEEEcCCCcEeeeCCceEEEEEeCCEEEecCCCCccccHHHHHHHHHhhhhhhCCCcceEEEEEcCHHHHhccceEEE
Q 017245 243 SASIWIDEDGYVAEGPNVNVAFITHDKELVLPFFDKILSGCTAKRLLELAPKLVEQGRLKSVKTANLTVDEAKGAAEMMY 322 (375)
Q Consensus 243 deaL~ld~~G~V~E~s~sNvffv~k~g~l~TP~~~~iL~GiTR~~vlela~~l~~~G~~~~V~er~i~~~eL~~adEvfl 322 (375)
+....++++|+-=|-+-+|+ + ++|.=+|= |=.|++-...|+.|+.|-+.|+ .-+-|...-++-.||-.+
T Consensus 169 ~~p~~~~~~~~~F~iGka~v-L--rdG~D~ti----iA~G~mv~~al~AA~~L~~~GI----sa~Vi~m~tIKPiD~~~i 237 (312)
T COG3958 169 KVPVVVDEGGYTFEIGKANV-L--RDGSDLTI----IATGVMVAEALEAAEILKKEGI----SAAVINMFTIKPIDEQAI 237 (312)
T ss_pred CCCceecCCCceEeccceeE-e--ecCCceEE----EecCcchHHHHHHHHHHHhcCC----CEEEEecCccCCCCHHHH
Confidence 44566777789999999999 4 34422211 2478899999999998876674 445556566666666666
Q ss_pred EcCccceEEEEEECCeecCCCChhHHHHHHH
Q 017245 323 VGSTLPLLAITVWDEQPIGDGNVGELTMALS 353 (375)
Q Consensus 323 ~nS~~gv~PV~~id~~~i~~g~~gpvt~~L~ 353 (375)
...++.-.-|..++++.+-.|--+-++.-|.
T Consensus 238 ~~~A~~t~~IvT~EeHsi~GGlGsaVAEvls 268 (312)
T COG3958 238 LKAARETGRIVTAEEHSIIGGLGSAVAEVLS 268 (312)
T ss_pred HHHHhhcCcEEEEecceeecchhHHHHHHHH
Confidence 6666666667788888775553344444433
No 35
>PRK10474 putative PTS system fructose-like transporter subunit EIIB; Provisional
Probab=20.36 E-value=3.2e+02 Score=21.38 Aligned_cols=50 Identities=16% Similarity=0.134 Sum_probs=32.6
Q ss_pred HHHHHhhhhhhCCCcceEE-------EEEcCHHHHhccceEEEEcCccceEEEEEECCeec
Q 017245 287 RLLELAPKLVEQGRLKSVK-------TANLTVDEAKGAAEMMYVGSTLPLLAITVWDEQPI 340 (375)
Q Consensus 287 ~vlela~~l~~~G~~~~V~-------er~i~~~eL~~adEvfl~nS~~gv~PV~~id~~~i 340 (375)
.+-+.|+++ |+-+.|+ +..++.+++..||-+++.+.. .+.--.++.|+++
T Consensus 5 aL~~aA~~~---G~~i~VEtqg~~g~~~~lt~~~i~~Ad~VIia~d~-~i~~~~rf~gk~v 61 (88)
T PRK10474 5 ALESAAKAK---GWEVKVETQGSIGLENELTAEDVASADMVILTKDI-GIKFEERFAGKTI 61 (88)
T ss_pred HHHHHHHHC---CCeEEEEecCCcCcCCCCCHHHHHhCCEEEEEecC-CCcchhccCCCce
Confidence 344566666 8733333 345788999999999999875 3322456777654
No 36
>TIGR02530 flg_new flagellar operon protein. Members of this family are found in a subset of bacterial flagellar operons, generally between genes designated flgD and flgE, in species as diverse as Bacillus halodurans and various other Firmicutes, Geobacter sulfurreducens, and Bdellovibrio bacteriovorus. The specific molecular function is unknown.
Probab=20.21 E-value=2e+02 Score=23.35 Aligned_cols=33 Identities=24% Similarity=0.423 Sum_probs=22.0
Q ss_pred HHHHHHhcCCcEEEEEcCCCcEeeeCCceEEEE--EeCCEEEecC
Q 017245 233 AKMEAEDKGASASIWIDEDGYVAEGPNVNVAFI--THDKELVLPF 275 (375)
Q Consensus 233 a~~eA~~~G~deaL~ld~~G~V~E~s~sNvffv--~k~g~l~TP~ 275 (375)
+-.+|+++|..|.|.+-. +++|| +++.+++|.-
T Consensus 43 av~~A~~KG~kesLvl~~----------d~AlVvsv~NrTVITAm 77 (96)
T TIGR02530 43 AVEEAESKGVKDSLILMN----------DAALVVSLKNRTVITAM 77 (96)
T ss_pred HHHHHHhcCCCceEEEeC----------CEEEEEEcCCCeEEEEe
Confidence 346789999999888832 22333 3777777754
No 37
>PRK13669 hypothetical protein; Provisional
Probab=20.14 E-value=86 Score=24.49 Aligned_cols=35 Identities=17% Similarity=0.339 Sum_probs=24.6
Q ss_pred Hhhhhhhhhccccc--cccCCCccccceecChHHHHHHHHh
Q 017245 28 CLCLKFCVSCLFSV--EAENGSEFKAHMFSSSSELLQKLQE 66 (375)
Q Consensus 28 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~ 66 (375)
--|+..|-.|..++ .|+|. .+- ..+.++.++++.+
T Consensus 34 ~gCls~CG~C~~~~FAlVng~---~V~-a~t~eeL~~kI~~ 70 (78)
T PRK13669 34 YGCLGYCGICSEGLFALVNGE---VVE-GETPEELVENIYA 70 (78)
T ss_pred cchhhhCcCcccCceEEECCe---Eee-cCCHHHHHHHHHH
Confidence 35999999999988 36662 111 1278888888765
Done!