RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 017245
(375 letters)
>gnl|CDD|215454 PLN02845, PLN02845, Branched-chain-amino-acid aminotransferase-like
protein.
Length = 336
Score = 566 bits (1461), Expect = 0.0
Identities = 208/330 (63%), Positives = 258/330 (78%), Gaps = 1/330 (0%)
Query: 46 GSEFKAHMFSSSSELLQKLQEKWSSVKKKPYPAMYSSIFGGIILDPAMMVIPIDDHMVHR 105
GS K S++E++Q+LQ KWS KK+ + AMYSS+ GGI DPA MVIP+DDHMVHR
Sbjct: 7 GSRTKVPPLLSAAEMIQRLQSKWSDAKKQNFGAMYSSVVGGITTDPAAMVIPLDDHMVHR 66
Query: 106 GHGVFDTAIILNGYLYELDVHLDRFLRSAVSARISSPFPRSTLRSILVQLTAASQCKKGT 165
GHGVFDTA I +G+LYELD HLDRFLRSA A+I PF R+TLR IL+Q AAS C+ G+
Sbjct: 67 GHGVFDTATIRDGHLYELDAHLDRFLRSAAKAKIPLPFDRATLRRILLQTVAASGCRNGS 126
Query: 166 LRFWLTAGPGDFLLSPAGCPTSAFYAVVIDDDFSQC-KEGVKVITSSIPMKPRLFATVKN 224
LR+WL+AGPG F LSP+GC AFYAVVI+D ++Q EGVKV+TSS+P+KP FATVK+
Sbjct: 127 LRYWLSAGPGGFSLSPSGCSEPAFYAVVIEDTYAQDRPEGVKVVTSSVPIKPPQFATVKS 186
Query: 225 VNYLPNVLAKMEAEDKGASASIWIDEDGYVAEGPNVNVAFITHDKELVLPFFDKILSGCT 284
VNYLPN L++MEAE++GA A IW+DE+G+VAEGPN+NVAF+T+D ELVLP FDKILSGCT
Sbjct: 187 VNYLPNALSQMEAEERGAFAGIWLDEEGFVAEGPNMNVAFLTNDGELVLPPFDKILSGCT 246
Query: 285 AKRLLELAPKLVEQGRLKSVKTANLTVDEAKGAAEMMYVGSTLPLLAITVWDEQPIGDGN 344
A+R+LELAP+LV G L+ VK ++V+EAK A EMM +GS +P+L I WD QPIGDG
Sbjct: 247 ARRVLELAPRLVSPGDLRGVKQRKISVEEAKAADEMMLIGSGVPVLPIVSWDGQPIGDGK 306
Query: 345 VGELTMALSDLLWEDMVAGPETQRHCVSYD 374
VG +T+AL DLL +DM +GP R V Y
Sbjct: 307 VGPITLALHDLLLDDMRSGPPGVRTPVPYG 336
>gnl|CDD|238800 cd01559, ADCL_like, ADCL_like: 4-Amino-4-deoxychorismate lyase: is
a member of the fold-type IV of PLP dependent enzymes
that converts 4-amino-4-deoxychorismate (ADC) to
p-aminobenzoate and pyruvate. Based on the information
available from the crystal structure, most members of
this subgroup are likely to function as dimers. The
enzyme from E.Coli, the structure of which is available,
is a homodimer that is folded into a small and a larger
domain. The coenzyme pyridoxal 5; -phosphate resides at
the interface of the two domains that is linked by a
flexible loop. Members of this subgroup are found in
Eukaryotes and bacteria.
Length = 249
Score = 226 bits (578), Expect = 1e-72
Identities = 95/260 (36%), Positives = 140/260 (53%), Gaps = 14/260 (5%)
Query: 100 DHMVHRGHGVFDTAIILNGYLYELDVHLDRFLRSAVSARISSPFPRSTLRSILVQLTAAS 159
D G GVF+T L+G L+ LD HL R RSA I LR+ L L AA+
Sbjct: 1 DRGFAYGDGVFETMRALDGRLFLLDAHLARLERSARRLGIP-EPDLPRLRAALESLLAAN 59
Query: 160 QCKKGTLRFWLTAGPGDFLLSPAGCPTSAFYAVVIDDDFSQCKEGVKVITSSIPM-KPRL 218
+G +R L+ GPG +P+ CP A Y VI + ++GV++IT + + + L
Sbjct: 60 DIDEGRIRLILSRGPGGRGYAPSVCPGPALYVSVIPLPPAWRQDGVRLITCPVRLGEQPL 119
Query: 219 FATVKNVNYLPNVLAKMEAEDKGASASIWIDEDGYVAEGPNVNVAFITHDKELVLPFFDK 278
A +K++NYL NVLAK EA D+GA ++++D DG V EG N+ F+ D ELV P D+
Sbjct: 120 LAGLKHLNYLENVLAKREARDRGADEALFLDTDGRVIEGTASNLFFVK-DGELVTPSLDR 178
Query: 279 -ILSGCTAKRLLELAPKLVEQGRLKSVKTANLTVDEAKGAAEMMYVGSTLPLLA-ITVWD 336
L+G T +R++ELA V L +++ AA+ ++ ++L +A +T D
Sbjct: 179 GGLAGITRQRVIELAAAKGYA-----VDERPLRLEDLL-AADEAFLTNSLLGVAPVTAID 232
Query: 337 EQPIGDGNVGELTMALSDLL 356
+ DG G LT AL +LL
Sbjct: 233 D---HDGPPGPLTRALRELL 249
>gnl|CDD|238254 cd00449, PLPDE_IV, PyridoxaL 5'-Phosphate Dependent Enzymes class
IV (PLPDE_IV). This D-amino acid superfamily, one of
five classes of PLPDE, consists of branched-chain amino
acid aminotransferases (BCAT), D-amino acid transferases
(DAAT), and 4-amino-4-deoxychorismate lyases (ADCL).
BCAT catalyzes the reversible transamination reaction
between the L-branched-chain amino and alpha-keto acids.
DAAT catalyzes the synthesis of D-glutamic acid and
D-alanine, and ADCL converts 4-amino-4-deoxychorismate
to p-aminobenzoate and pyruvate. Except for a few
enzymes, i. e., Escherichia coli and Salmonella BCATs,
which are homohexamers arranged as a double trimer, the
class IV PLPDEs are homodimers. Homodimer formation is
required for catalytic activity.
Length = 256
Score = 187 bits (477), Expect = 2e-57
Identities = 90/262 (34%), Positives = 126/262 (48%), Gaps = 11/262 (4%)
Query: 100 DHMVHRGHGVFDTAIILNGYLYELDVHLDRFLRSAVSARISSPFPRSTLRSILVQLTAAS 159
D +H G GVF+ G L+ LD HLDR RSA + P+ R LR L +L AA+
Sbjct: 1 DRGLHYGDGVFEGLRAGKGRLFRLDEHLDRLNRSAKRLGLPIPYDREELREALKELVAAN 60
Query: 160 QCKKGTLRFWLTAGPGDFLLSPAGCPTSAFYAVVI--DDDFSQCKEGVKVITSSIPMK-- 215
+R LT G G ++P P F ++GV++ITS +
Sbjct: 61 NGASLYIRPLLTRGVGGLGVAPPPSPEPTFVVFASPVGAYAKGGEKGVRLITSPDRRRAA 120
Query: 216 PRLFATVKNVNYLPNVLAKMEAEDKGASASIWIDEDGYVAEGPNVNVAFITHDKELVLPF 275
P K L +VLAK EA + GA ++ +D++GYV EG NV FI D ELV P
Sbjct: 121 PGGTGDAKTGGNLNSVLAKQEAAEAGADEALLLDDNGYVTEGSASNV-FIVKDGELVTPP 179
Query: 276 FD-KILSGCTAKRLLELAPKLVEQGRLKSVKTANLTVDEAKGAAEMMYVGSTLPLLAITV 334
D IL G T ++ELA +L V+ +++DE A E+ G+ + +T
Sbjct: 180 LDGGILPGITRDSVIELAKEL-----GIKVEERPISLDELYAADEVFLTGTAAEVTPVTE 234
Query: 335 WDEQPIGDGNVGELTMALSDLL 356
D + IGDG G +T L +LL
Sbjct: 235 IDGRGIGDGKPGPVTRKLRELL 256
>gnl|CDD|238799 cd01558, D-AAT_like, D-Alanine aminotransferase (D-AAT_like):
D-amino acid aminotransferase catalyzes transamination
between D-amino acids and their respective alpha-keto
acids. It plays a major role in the synthesis of
bacterial cell wall components like D-alanine and
D-glutamate in addition to other D-amino acids. The
enzyme like other members of this superfamily requires
PLP as a cofactor. Members of this subgroup are found in
all three forms of life.
Length = 270
Score = 148 bits (375), Expect = 3e-42
Identities = 79/278 (28%), Positives = 130/278 (46%), Gaps = 14/278 (5%)
Query: 84 FGGIILDPAMMVIPIDDHMVHRGHGVFDTAIILNGYLYELDVHLDRFLRSAVSARISSPF 143
G + + + D G GV++ + NG + LD HLDR RSA RI P+
Sbjct: 2 LNGEYVPREEAKVSVFDRGFLFGDGVYEVIRVYNGKPFALDEHLDRLYRSAKELRIDIPY 61
Query: 144 PRSTLRSILVQLTAASQCKKGTLRFWLT--AGPGDFLLSPAGCPTSAFYAVVIDDDFSQC 201
R L+ ++ +L A ++ +G + +T GP PT + ++
Sbjct: 62 TREELKELIRELVAKNEGGEGDVYIQVTRGVGPRGHDFPKCVKPTVVIITQPLPLPPAEL 121
Query: 202 KE-GVKVITSSIP--MKPRLFATVKNVNYLPNVLAKMEAEDKGASASIWIDEDGYVAEGP 258
E GV+VIT ++ +K++N L NVLAK EA++ GA +I +D DG V EG
Sbjct: 122 LEKGVRVITVPDIRWLRCD----IKSLNLLNNVLAKQEAKEAGADEAILLDADGLVTEGS 177
Query: 259 NVNVAFITHDKELVLPFFDKILSGCTAKRLLELAPKLVEQGRLKSVKTANLTVDEAKGAA 318
+ NV + + + P + IL G T ++ELA +L + V+ +++E A
Sbjct: 178 SSNVFIVKNGVLVTPPLDNGILPGITRATVIELAKEL----GIP-VEERPFSLEELYTAD 232
Query: 319 EMMYVGSTLPLLAITVWDEQPIGDGNVGELTMALSDLL 356
E+ +T ++ + D +PIGDG G +T L +
Sbjct: 233 EVFLTSTTAEVMPVVEIDGRPIGDGKPGPVTKRLREAY 270
>gnl|CDD|216275 pfam01063, Aminotran_4, Aminotransferase class IV. The D-amino
acid transferases (D-AAT) are required by bacteria to
catalyze the synthesis of D-glutamic acid and D-alanine,
which are essential constituents of bacterial cell wall
and are the building block for other D-amino acids.
Despite the difference in the structure of the
substrates, D-AATs and L-ATTs have strong similarity.
Length = 231
Score = 131 bits (331), Expect = 3e-36
Identities = 79/239 (33%), Positives = 109/239 (45%), Gaps = 15/239 (6%)
Query: 123 LDVHLDRFLRSAVSARISSPFPRSTLRSILVQLTAAS-QCKKGTLRFWLTAGPGDFLLSP 181
LD HL+R RSA A I P LR I+ +L A+ G LR ++ G G LSP
Sbjct: 3 LDEHLERLRRSA-KALIGLPLSIEDLRKIIQELLEANGPAGSGRLRILVSRGDGGRGLSP 61
Query: 182 AGCPTSAFYAVVIDDDFSQ--CKEGVKVITSSIPMKPRLFATVKNVNYLPNVLAKME-AE 238
+++ + VK+ SS P+ PR A K NYL NVLA + AE
Sbjct: 62 PEGAIPIIVSLIALASSAPPRLLITVKLRLSSYPV-PRPLAGHKTTNYLDNVLAALRAAE 120
Query: 239 DKGASASIWIDEDGYVAEGPNVNVAFITHDKELVLPFFDK-ILSGCTAKRLLELAPKLVE 297
G ++ +DEDG V EG N+ FI L P + IL G T + LL+LA +L
Sbjct: 121 RAGFDDALLLDEDGNVTEGSTSNI-FIVKGGTLYTPPLESGILPGITRQALLDLAKELG- 178
Query: 298 QGRLKSVKTANLTVDEAKGAAEMMYVGSTLPLLAITVWDEQPIGDGNVGELTMALSDLL 356
V+ LT+ + + A E S + +T D + GN G +T L +LL
Sbjct: 179 ----IEVEERPLTLADLQEADEAFLTNSLRGVTPVTSIDGRIF--GNPGPITAKLRELL 231
>gnl|CDD|223193 COG0115, IlvE, Branched-chain amino acid
aminotransferase/4-amino-4-deoxychorismate lyase [Amino
acid transport and metabolism / Coenzyme metabolism].
Length = 284
Score = 131 bits (332), Expect = 7e-36
Identities = 85/282 (30%), Positives = 125/282 (44%), Gaps = 20/282 (7%)
Query: 86 GIILDPAMMVIPIDDHMVHRGHGVFDTAIILNGYLYELDVHLDRFLRSAVSARISSPFPR 145
G ++ + + D +H G GVF+T NG L+ LD HL R RSA + P
Sbjct: 8 GELVPEEDAKLSVLDRGLHYGDGVFETLRAYNGKLFRLDEHLARLKRSAKRLGLPRPESE 67
Query: 146 STLRSILVQLTAASQCKKGTLRFWLTAGPGDFLLSPAGC-PTSAFYAVVIDDDFS--QCK 202
+ ++ L A + G L G G L PT A + + +
Sbjct: 68 EEIELLIQLLLAKNNLVPGLYIRPLVRGGGGGLGVRDATEPTLIVAASPVGAYLKGGRLE 127
Query: 203 EGVKVITSSIPMKPR--LFATVKNVNYLPNVLAKMEAEDKGASASIWIDEDGYVAEGPNV 260
+GV ++ SS + A K NYL +VLAK EA+ GA ++ +DEDGYV EG
Sbjct: 128 KGVVLVISSPVRRAPPGPGAAKKTGNYLSSVLAKREAKAAGADEALLLDEDGYVTEGAGS 187
Query: 261 NVAFITHDKELVLPFFD-KILSGCTAKRLLELAPKL---VEQGRLKSVKTANLTVDEAKG 316
NV F+ D LV P IL G T LLELA +L VE+ +T+++ K
Sbjct: 188 NVFFVKGDGVLVTPPLSGGILPGITRDSLLELAKELGLTVEERP--------ITLEDLKQ 239
Query: 317 AAEMMYVGSTLPLLAITVWDEQPIGDGNVGELTMALSDLLWE 358
A E+ + + + + D + G G +T L +LL +
Sbjct: 240 ADEVFLTNTAAGVTPVGLIDGRV---GQPGPVTKKLRELLTD 278
>gnl|CDD|180656 PRK06680, PRK06680, D-amino acid aminotransferase; Reviewed.
Length = 286
Score = 126 bits (320), Expect = 5e-34
Identities = 77/263 (29%), Positives = 125/263 (47%), Gaps = 14/263 (5%)
Query: 96 IPIDDHMVHRGHGVFDTAIILNGYLYELDVHLDRFLRSAVSARISSPFPRSTLRSILVQL 155
+ I+D G+++ + +G L +LD HL R RS RI+ P R+ L +L +L
Sbjct: 19 VHIEDRGFQFADGIYEVCAVRDGKLVDLDRHLARLFRSLGEIRIAPPMTRAELVEVLREL 78
Query: 156 TAASQCKKGTLRFWLTAG--PGDFLLSPAGCPTSAFY---AVVIDDDFSQCKEGVKVITS 210
++ ++G + +T G D + A S +V + + G+KVIT
Sbjct: 79 IRRNRVREGLVYLQVTRGVARRDHVFPAADVKPSVVVFAKSVDFARPAAAAETGIKVIT- 137
Query: 211 SIPMKPRLFATVKNVNYLPNVLAKMEAEDKGASASIWIDEDGYVAEGPNVNVAFITHDKE 270
+P +K+V LPNVLAK A++ GA + +D DG+V EG + N +T D +
Sbjct: 138 -VPDNRWKRCDIKSVGLLPNVLAKQAAKEAGAQEAWMVD-DGFVTEGASSNAWIVTKDGK 195
Query: 271 LVL-PFFDKILSGCTAKRLLELAPKLVEQGRLKSVKTANLTVDEAKGAAEMMYVGSTLPL 329
LV P + IL G T L++LA +L L+ V+ T+ EA A E ++ +
Sbjct: 196 LVTRPADNFILPGITRHTLIDLAKEL----GLE-VEERPFTLQEAYAAREAFITAASSFV 250
Query: 330 LAITVWDEQPIGDGNVGELTMAL 352
+ D + IG+G G + L
Sbjct: 251 FPVVQIDGKQIGNGKPGPIAKRL 273
>gnl|CDD|236238 PRK08320, PRK08320, branched-chain amino acid aminotransferase;
Reviewed.
Length = 288
Score = 103 bits (258), Expect = 3e-25
Identities = 76/273 (27%), Positives = 130/273 (47%), Gaps = 30/273 (10%)
Query: 95 VIPIDDHMVHRGHGVFDTAIILNGYLYELDVHLDRFLRSAVSARISSPFPRSTLRSILVQ 154
+ + DH G GVF+ NG ++ L H+DR SA + + P + + I+++
Sbjct: 18 KVSVFDHGFLYGDGVFEGIRAYNGRVFRLKEHIDRLYDSAKAIMLEIPLSKEEMTEIVLE 77
Query: 155 LTAASQCKKGTLRFWLTAGPGDFLLSPAGCPTSAFYAVVIDD-------DFSQCKEGVKV 207
+ + +R ++ G GD L P CP V I + + + +G+KV
Sbjct: 78 TLRKNNLRDAYIRLVVSRGVGDLGLDPRKCPKPT--VVCIAEPIGLYPGELYE--KGLKV 133
Query: 208 ITSSI------PMKPRLFATVKNVNYLPNVLAKMEAEDKGASASIWIDEDGYVAEGPNVN 261
IT S + P+ VK++NYL N+LAK+EA G +I ++++GYVAEG N
Sbjct: 134 ITVSTRRNRPDALSPQ----VKSLNYLNNILAKIEANLAGVDEAIMLNDEGYVAEGTGDN 189
Query: 262 VAFITHDKELVLPF-FDKILSGCTAKRLLELAPKL-VEQGRLKSVKTANLTVDEAKGAAE 319
+ FI + +L+ P + L G T ++E+A +L + V+ T+ + A E
Sbjct: 190 I-FIVKNGKLITPPTYAGALEGITRNAVIEIAKELGIP------VREELFTLHDLYTADE 242
Query: 320 MMYVGSTLPLLAITVWDEQPIGDGNVGELTMAL 352
+ G+ ++ + D + IGDG G +T L
Sbjct: 243 VFLTGTAAEVIPVVKVDGRVIGDGKPGPITKKL 275
>gnl|CDD|130191 TIGR01121, D_amino_aminoT, D-amino acid aminotransferase. This
enzyme is a homodimer. The pyridoxal phosphate
attachment site is the Lys at position 146 of the seed
alignment, in the motif Cys-Asp-Ile-Lys-Ser-Leu-Asn.
Specificity is broad for various D-amino acids, and
differs among members of the family; the family is
designated equivalog, but with this caveat attached
[Energy metabolism, Amino acids and amines].
Length = 276
Score = 100 bits (250), Expect = 3e-24
Identities = 80/280 (28%), Positives = 120/280 (42%), Gaps = 23/280 (8%)
Query: 82 SIFGGIILDPAMMVIPIDDHMVHRGHGVFDTAIILNGYLYELDVHLDRFLRSAVSARISS 141
++ G +++ I I+D G GV++ + NG L+ ++ H+DR SA RI
Sbjct: 2 VLWNGQLVEREEAKIDIEDRGYQFGDGVYEVIRVYNGKLFTVNEHIDRLYASAAKIRIDI 61
Query: 142 PFPRSTLRSILVQLTAASQCKKGTLRFWLTAG--------PGDFLLSPAGCPTSAFYAVV 193
P+ + L +L +L + G + F +T G P + P Y
Sbjct: 62 PYTKEELHQLLHELVEKNNLNTGHVYFQVTRGVAPRNHQFPAGTVK-----PVITAYTKE 116
Query: 194 IDDDFSQCKEGVKVITSSIPMKPR-LFATVKNVNYLPNVLAKMEAEDKGASASIWIDEDG 252
+ ++GVK IT R L +K++N L NVLAK EA +KGA +I G
Sbjct: 117 VPRPEENLEKGVKAITVE---DIRWLRCDIKSLNLLGNVLAKQEAHEKGAYEAILH-RGG 172
Query: 253 YVAEGPNVNVAFITHDKELVLPFFDKILSGCTAKRLLELAPKLVEQGRLKSVKTANLTVD 312
V EG + NV I P + IL+G T +L A E+ + VK T +
Sbjct: 173 TVTEGSSSNVYGIKDGVLYTHPANNLILNGITRMVILACA----EENGIP-VKEEPFTKE 227
Query: 313 EAKGAAEMMYVGSTLPLLAITVWDEQPIGDGNVGELTMAL 352
E A E+ +T + + D Q IGDG G T L
Sbjct: 228 ELLNADEVFVSSTTAEITPVIEIDGQQIGDGKPGPWTRQL 267
>gnl|CDD|130192 TIGR01122, ilvE_I, branched-chain amino acid aminotransferase,
group I. Among the class IV aminotransferases are two
phylogenetically separable groups of branched-chain
amino acid aminotransferase (IlvE). The last common
ancestor of the two lineages appears also to have given
rise to a family of D-amino acid aminotransferases
(DAAT). This model represents the IlvE family more
strongly similar to the DAAT family [Amino acid
biosynthesis, Pyruvate family].
Length = 298
Score = 99.4 bits (248), Expect = 8e-24
Identities = 76/284 (26%), Positives = 121/284 (42%), Gaps = 24/284 (8%)
Query: 100 DHMVHRGHGVFDTAIILNG----YLYELDVHLDRFLRSAVSARISSPFPRSTLRSILVQL 155
H +H G GVF+ + ++ L H+ R SA R+ P+ + L +
Sbjct: 18 THALHYGTGVFEGIRAYDTDKGPAIFRLKEHIQRLYDSAKIYRMEIPYSKEELMEATRET 77
Query: 156 TAASQCKKGTLRFWLTAGPGDFLLSP-AGCPTSAFYAV-----VIDDDFSQCKEGVKVIT 209
+ + +R + G GD L+P AG A + ++ + +G+
Sbjct: 78 LRKNNLRSAYIRPLVFRGDGDLGLNPRAGYKPDVIIAAWPWGAYLGEEALE--KGIDAKV 135
Query: 210 SSIP-MKPRLFAT-VKNV-NYLPNVLAKMEAEDKGASASIWIDEDGYVAEGPNVNVAFIT 266
SS P T K NYL ++LAK EA G +I +D +GYVAEG N+ FI
Sbjct: 136 SSWRRNAPNTIPTAAKAGGNYLNSLLAKSEARRHGYDEAILLDVEGYVAEGSGENI-FIV 194
Query: 267 HDKELVLP-FFDKILSGCTAKRLLELAPKLVEQGRLKSVKTANLTVDEAKGAAEMMYVGS 325
D L P IL G T ++ LA +L + V ++ +E A E + G+
Sbjct: 195 KDGVLFTPPVTSSILPGITRDTVITLAKELGIE-----VVEQPISREELYTADEAFFTGT 249
Query: 326 TLPLLAITVWDEQPIGDGNVGELTMALSDLLWEDMVAGPETQRH 369
+ I D + IG+G G +T L + + D+V G T+ +
Sbjct: 250 AAEITPIREVDGRKIGNGRRGPVTKKLQEAFF-DLVTG-GTEDY 291
>gnl|CDD|183549 PRK12479, PRK12479, branched-chain amino acid aminotransferase;
Provisional.
Length = 299
Score = 95.4 bits (237), Expect = 3e-22
Identities = 75/297 (25%), Positives = 125/297 (42%), Gaps = 18/297 (6%)
Query: 86 GIILDPAMMVIPIDDHMVHRGHGVFDTAIILNGYLYELDVHLDRFLRSAVSARISSPFPR 145
G ++ V+ + DH G GVF+ G ++ L H+ R SA S ++ P
Sbjct: 10 GEFVEKEKAVVSVYDHGFLYGDGVFEGIRSYGGNVFCLKEHVKRLYESAKSILLTIPLTV 69
Query: 146 STLRSILVQLTAASQCKKGTLRFWLTAGPGDFLLSPAGCPTSAFYAVVIDDD---FSQ-- 200
+ ++Q ++ +R ++ G GD L P C + ++I + F Q
Sbjct: 70 DEMEEAVLQTLQKNEYADAYIRLIVSRGKGDLGLDPRSCVKPS--VIIIAEQLKLFPQEF 127
Query: 201 CKEGVKVIT--SSIPMKPRLFATVKNVNYLPNVLAKMEAEDKGASASIWIDEDGYVAEGP 258
G+ V++ S L +K++NYL NVL K+EA G ++ +++ GYV EG
Sbjct: 128 YDNGLSVVSVASRRNTPDALDPRIKSMNYLNNVLVKIEAAQAGVLEALMLNQQGYVCEGS 187
Query: 259 NVNVAFITHDKELVLPFFDKILSGCTAKRLLELAPKLVEQGRLKSVKTANLTVDEAKGAA 318
NV + K L P + L G T ++EL +L + T + A
Sbjct: 188 GDNVFVVKDGKVLTPPSYLGALEGITRNSVIELCERLS-----IPCEERPFTRHDVYVAD 242
Query: 319 EMMYVGSTLPLLAITVWDEQPIGDGNVGELTMALSD----LLWEDMVAGPETQRHCV 371
E+ G+ L+ + D + IGDG G +T L++ L E V P +
Sbjct: 243 EVFLTGTAAELIPVVKVDSREIGDGKPGSVTKQLTEEFKKLTRERGVRVPGLAESLL 299
>gnl|CDD|236114 PRK07849, PRK07849, 4-amino-4-deoxychorismate lyase; Provisional.
Length = 292
Score = 93.5 bits (233), Expect = 1e-21
Identities = 68/244 (27%), Positives = 98/244 (40%), Gaps = 29/244 (11%)
Query: 88 ILDPAMMVIPIDDHMVHRGHGVFDTAIILNGYLYELDVHLDRFLRSAVSARISSPFPRST 147
+ DP+ ++ DD RG GVF+T ++ +G L+ HL+R RSA + P
Sbjct: 20 VHDPSAPLLHADDLAAVRGDGVFETLLVRDGRPCNLEAHLERLARSAALLDLPEPDLDRW 79
Query: 148 LRSILVQLTAASQCKK----GTLRFWLTAGPGDFLLSPAGCPTS-AFYAVVIDDDFSQCK 202
R++ A + + LR + G G PT+ + V + +
Sbjct: 80 RRAV---ELAIEEWRAPEDEAALRLVYSRG-----RESGGAPTAWVTVSPVPERVARARR 131
Query: 203 EGVKVITSSI--------PMKPRLFATVKNVNYLPNVLAKMEAEDKGASASIWIDEDGYV 254
EGV VIT P L A K ++Y N+ A A +GA I+ DGYV
Sbjct: 132 EGVSVITLDRGYPSDAAERA-PWLLAGAKTLSYAVNMAALRYAARRGADDVIFTSTDGYV 190
Query: 255 AEGPNVNVAFITHDKELVLPFFDK-ILSGCTAKRLLELAPKLVEQGRLKSVKTANLTVDE 313
EGP V I D L+ P IL G T L E+A E+G + L +
Sbjct: 191 LEGPTSTV-VIATDDRLLTPPPWYGILPGTTQAALFEVA---REKG--WDCEYRALRPAD 244
Query: 314 AKGA 317
A
Sbjct: 245 LFAA 248
>gnl|CDD|238798 cd01557, BCAT_beta_family, BCAT_beta_family: Branched-chain
aminotransferase catalyses the transamination of the
branched-chain amino acids leusine, isoleucine and
valine to their respective alpha-keto acids,
alpha-ketoisocaproate, alpha-keto-beta-methylvalerate
and alpha-ketoisovalerate. The enzyme requires pyridoxal
5'-phosphate (PLP) as a cofactor to catalyze the
reaction. It has been found that mammals have two foms
of the enzyme - mitochondrial and cytosolic forms while
bacteria contain only one form of the enzyme. The
mitochondrial form plays a significant role in skeletal
muscle glutamine and alanine synthesis and in interorgan
nitrogen metabolism.Members of this subgroup are widely
distributed in all three forms of life.
Length = 279
Score = 81.5 bits (202), Expect = 1e-17
Identities = 77/303 (25%), Positives = 113/303 (37%), Gaps = 60/303 (19%)
Query: 96 IPIDDHMVHRGHGVFD-----TAIILNGYLYELDVHLDRFLRSAVSARISS--PFPRSTL 148
+ H +H G VF+ L+ D + +R R SAR PF
Sbjct: 2 LHPATHALHYGQAVFEGLKAYRTPDGKIVLFRPDENAERLNR---SARRLGLPPFSVEEF 58
Query: 149 RSILVQLTAASQCKKGTLRFWLTAGPGDFLLSP----------AGCPTSAFYAVVI---D 195
+ +L + G + P +AV
Sbjct: 59 IDAIKELVKLDA------DWVPYGGGASLYIRPFIFGTDPQLGVSPALEYLFAVFASPVG 112
Query: 196 DDFSQCKEGVKVITSSI----PMKPRLFATVKNV--NYLPNVLAKMEAEDKGASASIWID 249
F ++GV + SS P P NY ++LA+ EA +KG ++W+D
Sbjct: 113 AYFKGGEKGVSALVSSFRRAAPGGP----GAAKAGGNYAASLLAQKEAAEKGYDQALWLD 168
Query: 250 -EDGYVAEGPNVNVAFITHDKELVLPFFDK-ILSGCTAKRLLELAPKLVEQGRLKSVKTA 307
GYVAE +N+ F+ D EL+ P D IL G T +LELA +K V+
Sbjct: 169 GAHGYVAEVGTMNIFFVK-DGELITPPLDGSILPGITRDSILELA----RDLGIK-VEER 222
Query: 308 NLTVDEAKGAAEMMYVGSTLPLLAITV-------WDEQPIGDGNVGELTMALSDLLWEDM 360
+T DE A E+ G+ A V + + G+G VG +T L DLL D+
Sbjct: 223 PITRDELYEADEVFATGT-----AAVVTPVGEIDYRGKEPGEGEVGPVTKKLYDLLT-DI 276
Query: 361 VAG 363
G
Sbjct: 277 QYG 279
>gnl|CDD|235841 PRK06606, PRK06606, branched-chain amino acid aminotransferase;
Validated.
Length = 306
Score = 77.1 bits (191), Expect = 6e-16
Identities = 78/303 (25%), Positives = 121/303 (39%), Gaps = 59/303 (19%)
Query: 96 IPIDD-------HMVHRGHGVF------DTAIILNGYLYELDVHLDRFLRSAVSARISSP 142
+P +D H +H G GVF DT ++ L H R SA R+ P
Sbjct: 16 VPWEDAKVHVLTHALHYGTGVFEGIRAYDTP--KGPAIFRLREHTKRLFNSAKILRMEIP 73
Query: 143 FPRSTLRSILVQLTAASQCKKGTLR--FWLTAGPGDFLLSPAGCPTSAFYAVV-----ID 195
+ L ++ + K +R ++ G + P G PT A +
Sbjct: 74 YSVDELMEAQREVVRKNNLKSAYIRPLVFV--GDEGLGVRPHGLPTDVAIAAWPWGAYLG 131
Query: 196 DDFSQCKEGVKVITSS--------IPMKPRLFATVKNVNYLPNVLAKMEAEDKGASASIW 247
++ ++G++V SS IP + + NYL ++LAK EA G ++
Sbjct: 132 EE--ALEKGIRVKVSSWTRHAPNSIPTRAKASG-----NYLNSILAKTEARRNGYDEALL 184
Query: 248 IDEDGYVAEGPNVNVAFITHDKELVLPFFD-KILSGCTAKRLLELAPKL---VEQGRLKS 303
+D +GYV+EG N+ FI D L P IL G T ++ LA L V + R+
Sbjct: 185 LDVEGYVSEGSGENI-FIVRDGVLYTPPLTSSILEGITRDTVITLAKDLGIEVIERRIT- 242
Query: 304 VKTANLTVDEA--KG-AAEMMYVGSTLPLLAITVWDEQPIGDGNVGELTMALSDLLWEDM 360
+ DE G AAE+ + D + IG+G G +T L + D+
Sbjct: 243 -RDELYIADEVFFTGTAAEVTPIREV---------DGRQIGNGKRGPITEKLQSAYF-DI 291
Query: 361 VAG 363
V G
Sbjct: 292 VRG 294
>gnl|CDD|171470 PRK12400, PRK12400, D-amino acid aminotransferase; Reviewed.
Length = 290
Score = 76.6 bits (188), Expect = 1e-15
Identities = 70/260 (26%), Positives = 120/260 (46%), Gaps = 11/260 (4%)
Query: 96 IPIDDHMVHRGHGVFDTAIILNGYLYELDVHLDRFLRSAVSARISSPFPRSTLRSILVQL 155
I +++ + G GV++ + G + LD H+ R RS ++ PF ++ L ++L +L
Sbjct: 23 IELEERGLQFGDGVYEVIRLYKGNFHLLDPHITRLYRSMEEIELTLPFSKAELITLLYKL 82
Query: 156 TAASQC-KKGTLRFWLTAG--PGDFLLSPAGCPTSAFYAVVIDDDFSQCKEGVKVITSSI 212
+ + GT+ ++ G S PT Y + + GV+ I+
Sbjct: 83 IENNNFHEDGTIYLQVSRGVQARTHTFSYDVPPTIYAYITKKERPALWIEYGVRAISE-- 140
Query: 213 PMKPRLFATVKNVNYLPNVLAKMEAEDKGASASIWIDEDGYVAEGPNVNVAFITHDKELV 272
P L +K++N LPN+LA +AE KG ++++ +G V EG + N I +
Sbjct: 141 PDTRWLRCDIKSLNLLPNILAATKAERKGCKEALFV-RNGTVTEGSHSNFFLIKNGTLYT 199
Query: 273 LPFFDKILSGCTAKRLLELAPKLVEQGRLKSVKTANLTVDEAKGAAEMMYVGSTLPLLAI 332
P IL+G + +L LA L R+ V+ +V + A E + G+T+ +L +
Sbjct: 200 HPANHLILNGIIRQYVLSLAKTL----RI-PVQEELFSVRDVYQADECFFTGTTIEILPM 254
Query: 333 TVWDEQPIGDGNVGELTMAL 352
T D I DG VG +T L
Sbjct: 255 THLDGTAIQDGQVGPITKML 274
>gnl|CDD|181067 PRK07650, PRK07650, 4-amino-4-deoxychorismate lyase; Provisional.
Length = 283
Score = 75.0 bits (185), Expect = 3e-15
Identities = 73/265 (27%), Positives = 119/265 (44%), Gaps = 23/265 (8%)
Query: 100 DHMVHRGHGVFDTAIILNGYLYELDVHLDRFLRSAVSARISSPFPRSTLRSILVQLTAAS 159
DH G GVF+T I NG+ + LD H DR + + +I + + IL L +
Sbjct: 20 DHGYLYGLGVFETFRIYNGHPFLLDDHYDRLNDALDTLQIEWTMTKDEVLLILKNLLEKN 79
Query: 160 QCKKGTLRFWLTAGPGDFLLSPAGC--PTSAFYAVVID-DDFSQCKEGV--KVITSSIPM 214
+ +RF ++AG G+ L PT Y + KEGV K ++
Sbjct: 80 GLENAYVRFNVSAGIGEIGLQTEMYEEPTVIVYMKPLAPPGLPAEKEGVVLKQRRNTPEG 139
Query: 215 KPRLFATVKNVNYLPNVLAKMEAEDKGASASIWIDEDGYVAEGPNVNVAFITHDKELVLP 274
RL K+ +YL N+L K E + I++ E+GYVAEG N+ ++ D + P
Sbjct: 140 AFRL----KSHHYLNNILGKREIGNDPNKEGIFLTEEGYVAEGIVSNLFWVKGDI-VYTP 194
Query: 275 FFDK-ILSGCTAKRLLELAPKL---VEQGRLKSVKTANLTVDEAKGAAEMMYVGSTLPLL 330
+ IL+G T ++++ +L V++G T +E A E+ S ++
Sbjct: 195 SLETGILNGITRAFVIKVLEELGIEVKEGF--------YTKEELLSADEVFVTNSIQEIV 246
Query: 331 AITVWDEQPIGDGNVGELTMALSDL 355
+T +E+ G VG +T L +L
Sbjct: 247 PLTRIEERDF-PGKVGMVTKRLQNL 270
>gnl|CDD|233278 TIGR01123, ilvE_II, branched-chain amino acid aminotransferase,
group II. Among the class IV aminotransferases are two
phylogenetically separable groups of branched-chain
amino acid aminotransferase (IlvE). The last common
ancestor of the two lineages appears also to have given
rise to a family of D-amino acid aminotransferases
(DAAT). This model represents the IlvE family less
similar to the DAAT family [Amino acid biosynthesis,
Pyruvate family].
Length = 313
Score = 55.5 bits (134), Expect = 1e-08
Identities = 48/150 (32%), Positives = 66/150 (44%), Gaps = 32/150 (21%)
Query: 226 NYLPNVLAKMEAEDKGASASIWID--EDGYVAEGPNVNVAFITHDKELVL-PFFDKILSG 282
NY ++LA+ +A ++G +++D E Y+ E +N FIT D ELV P IL G
Sbjct: 159 NYAASLLAQAKAAEQGCDQVVYLDPVEHTYIEEVGAMNFFFITGDGELVTPPLSGSILPG 218
Query: 283 CTAKRLLELAPKL---VEQGRLKSVKTANLTVDEAKGAAEM-MYVGSTLPLLAITVWDEQ 338
T LL+LA L VE+ R + +DE K E V + IT
Sbjct: 219 ITRDSLLQLAKDLGMEVEERR--------IDIDELKAFVEAGEEVFACGTAAVIT----- 265
Query: 339 PIG------------DGNVGELTMALSDLL 356
P+G G GE+T AL D L
Sbjct: 266 PVGEIQHGGKEVVFASGQPGEVTKALYDEL 295
>gnl|CDD|235696 PRK06092, PRK06092, 4-amino-4-deoxychorismate lyase; Reviewed.
Length = 268
Score = 53.7 bits (130), Expect = 3e-08
Identities = 45/175 (25%), Positives = 76/175 (43%), Gaps = 25/175 (14%)
Query: 96 IPIDDHMVHRGHGVFDTAIILNGYLYELDVHLDRFLRSAVSARISSPFP-RSTLRSILVQ 154
+ + D G G F TA + +G + L HL R L+ A R++ P + L + Q
Sbjct: 12 LSVSDRSTQYGDGCFTTARVRDGQVSLLSRHLQR-LQDAC-ERLAIPLDDWAQLEQEMKQ 69
Query: 155 LTAASQCKKGTLRFWLTAGPGDFLLSPAGCPTS----------AFYAVVIDDDFSQCKEG 204
A++ + G L+ ++ G G SPAGC A Y+ ++G
Sbjct: 70 --LAAELENGVLKVIISRGSGGRGYSPAGCAAPTRILSVSPYPAHYS-------RWREQG 120
Query: 205 VKVITSSIPM--KPRLFATVKNVNYLPNVLAKMEAEDKGASASIWIDEDGYVAEG 257
+ + + P L A +K++N L VL + E E A ++ +D +G+V E
Sbjct: 121 ITLALCPTRLGRNPLL-AGIKHLNRLEQVLIRAELEQTEADEALVLDSEGWVIEC 174
>gnl|CDD|132501 TIGR03461, pabC_Proteo, aminodeoxychorismate lyase. Members of
this protein family are aminodeoxychorismate lyase (ADC
lyase), EC 4.1.3.38, the PabC protein of PABA
biosynthesis. PABA (para-aminobenzoate) is a precursor
of folate, needed for de novo purine biosynthesis. This
enzyme is a pyridoxal-phosphate-binding protein in the
class IV aminotransferase family (pfam01063)
[Biosynthesis of cofactors, prosthetic groups, and
carriers, Folic acid].
Length = 261
Score = 53.4 bits (129), Expect = 5e-08
Identities = 64/218 (29%), Positives = 96/218 (44%), Gaps = 35/218 (16%)
Query: 96 IPIDDHMVHRGHGVFDTAIILNGYLYELDVHLDRFLRSAVSARISSPFP-RSTLRSILVQ 154
I + D + G G F TA + NG + LD+HL+R +A AR+ P P LR + Q
Sbjct: 10 ISVSDRGLQYGDGCFTTAKVRNGKIELLDLHLERLQDAA--ARLGIPLPDWDALREEMAQ 67
Query: 155 LTAASQCKKGTLRFWLTAGPGDFLLSPAGCPTS----------AFYAVVIDDDFSQCKEG 204
L A+ G L+ ++ G G SP GC A Y+ + Q +G
Sbjct: 68 L--AAGYSLGVLKVIISRGSGGRGYSPPGCSDPTRIISVSPYPAHYS-----AWQQ--QG 118
Query: 205 VKVITSSIPM--KPRLFATVKNVNYLPNVLAKMEAEDKGASASIWIDEDGYVAEGPNVNV 262
+++ S + + P L A +K++N L VL K E E+ A ++ +D DG V E N+
Sbjct: 119 IRLGVSPVRLGRNP-LLAGIKHLNRLEQVLIKAELENSEADEALVLDTDGNVVECTAANI 177
Query: 263 AFITHDKELVLPFFDKILSGCTAK-----RLLELAPKL 295
F ++ P LS C +L L P L
Sbjct: 178 -FWRKGNQVFTP----DLSYCGVAGVMRQHVLALLPAL 210
>gnl|CDD|237363 PRK13357, PRK13357, branched-chain amino acid aminotransferase;
Provisional.
Length = 356
Score = 53.2 bits (129), Expect = 8e-08
Identities = 49/147 (33%), Positives = 65/147 (44%), Gaps = 25/147 (17%)
Query: 226 NYLPNVLAKMEAEDKGASASIWID--EDGYVAEGPNVNVAFITHDKELVLPFFDKILSGC 283
NY ++LA+ EA++KG +++D E Y+ E +N FIT D + P IL G
Sbjct: 200 NYAASLLAQAEAKEKGCDQVLYLDAVEHTYIEEVGGMNFFFITKDGTVTPPLSGSILPGI 259
Query: 284 TAKRLLELAPKL---VEQGRLKSVKTANLTVDEAKG----------AAEMMYVGSTLPLL 330
T LL+LA L VE+ V D A G AA + +G
Sbjct: 260 TRDSLLQLAEDLGLTVEERP---VSIDEWQADAASGEFTEAFACGTAAVITPIGG----- 311
Query: 331 AITVWD-EQPIGDGNVGELTMALSDLL 356
I D E IGDG VG +T L D L
Sbjct: 312 -IKYKDKEFVIGDGEVGPVTQKLYDEL 337
>gnl|CDD|181025 PRK07544, PRK07544, branched-chain amino acid aminotransferase;
Validated.
Length = 292
Score = 41.5 bits (98), Expect = 4e-04
Identities = 23/66 (34%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
Query: 227 YLPNVLAKMEAEDKGASASIWIDEDGYVAEGPNVNVAFITHDKELVLPFFDKILSGCTAK 286
Y+ ++K AE KG + ++ +D GYVAE N+ F+ D + P D L G T +
Sbjct: 162 YMICTISKHAAEAKGYADALMLDYRGYVAEATGANIFFVK-DGVIHTPTPDCFLDGITRQ 220
Query: 287 RLLELA 292
++ELA
Sbjct: 221 TVIELA 226
>gnl|CDD|184994 PRK15034, PRK15034, nitrate/nitrite transport protein NarU;
Provisional.
Length = 462
Score = 35.2 bits (81), Expect = 0.045
Identities = 25/85 (29%), Positives = 39/85 (45%), Gaps = 6/85 (7%)
Query: 18 HVLR--FCLVIYCLCLKFCVSCLFSVEAENGSEFKAHMFSSSSELLQKLQEKWSSVKKKP 75
H+ R + + CL L FCV LFS N ++ + + LL L ++ + P
Sbjct: 30 HIARRNLWISVSCLLLAFCVWMLFSAVTVNLNKIGFNFTTDQLFLLTALPSVSGALLRVP 89
Query: 76 YPAMYSSIFGG---IILDPAMMVIP 97
Y M IFGG + A+++IP
Sbjct: 90 YSFMV-PIFGGRRWTVFSTAILIIP 113
>gnl|CDD|226118 COG3590, PepO, Predicted metalloendopeptidase [Posttranslational
modification, protein turnover, chaperones].
Length = 654
Score = 34.7 bits (80), Expect = 0.084
Identities = 29/153 (18%), Positives = 50/153 (32%), Gaps = 19/153 (12%)
Query: 171 TAGPGDFLLSPAGCPTSAFYAVVIDDDFSQCKEGVKVITSSIPMKPRL--FATVKNVNYL 228
P D +L G Y +D+ + K GV P+KP L ++ + +
Sbjct: 70 EQAPEDAILQRIG----KLYRSFMDEAKRE-KAGVD------PLKPELAEIDSLASFSDF 118
Query: 229 PNVLAKMEAEDKGASASIWIDEDGYVAEGPNVNVAFITHDKELVLPFFDKILSGCTAKRL 288
L ++E +G + D + V + + L LP L
Sbjct: 119 AAALGQLERAGQGNPFGFSVSPD---FKDSTRYVLYFSQSG-LGLPDTTYYRDE-QHAEL 173
Query: 289 LELAPKLVEQGRLKSVKTANLTVDEAKGAAEMM 321
L + V + L + D AK A ++
Sbjct: 174 LAAYKEHVAR-MLGLFGFSEEEEDAAKHALRVV 205
>gnl|CDD|129679 TIGR00591, phr2, photolyase PhrII. All proteins in this family for
which functions are known are DNA-photolyases used for
the direct repair of UV irradiation induced DNA damage.
Some repair 6-4 photoproducts while others repair
cyclobutane pyrimidine dimers. This family is based on
the phylogenomic analysis of JA Eisen (1999, Ph.D.
Thesis, Stanford University) [DNA metabolism, DNA
replication, recombination, and repair].
Length = 454
Score = 32.5 bits (74), Expect = 0.43
Identities = 23/78 (29%), Positives = 30/78 (38%), Gaps = 13/78 (16%)
Query: 158 ASQCKKGTLRFWLTAGPGDFLLSPAGCPTSAFYAVVIDDDFS------QCKEGVKVITSS 211
A++C++ + F L GP LL P A AVV DFS Q E V +
Sbjct: 84 ANECERLIIPFHLLDGPPKELL-PYFVDLHAAAAVV--TDFSPLRQPEQWDEAVGKLLPK 140
Query: 212 IPMKPRLFATVKNVNYLP 229
F V N +P
Sbjct: 141 DV----PFQQVDAHNVVP 154
>gnl|CDD|240174 cd05153, HomoserineK_II, Homoserine Kinase, type II. Homoserine
kinase is part of a larger superfamily that includes the
catalytic domains of other kinases, such as the typical
serine/threonine/tyrosine protein kinases (PKs), RIO
kinases, actin-fragmin kinase (AFK), and
phosphoinositide 3-kinase (PI3K). This subfamily is
composed of unusual homoserine kinases, from a subset of
bacteria, which have a PK fold. These proteins do not
bear any similarity to the GHMP family homoserine
kinases present in most bacteria and eukaryotes.
Homoserine kinase catalyzes the transfer of the
gamma-phosphoryl group from ATP to L-homoserine
producing L-homoserine phosphate, an intermediate in the
production of the amino acids threonine, methionine, and
isoleucine.
Length = 296
Score = 30.7 bits (70), Expect = 1.3
Identities = 21/80 (26%), Positives = 32/80 (40%), Gaps = 16/80 (20%)
Query: 98 IDDHMVHRGHGVFDTAIILNGYLYELDVHLDRFLRSAVSARISSPFPRSTLRSILVQLTA 157
ID + ++D AI LN + ++ D LD A+ A + P LT
Sbjct: 198 IDFYFACTDAFLYDLAITLNDWCFDEDGALDPERAQALLAGYQAVRP----------LTE 247
Query: 158 ASQ------CKKGTLRFWLT 171
A + + LRFWL+
Sbjct: 248 AERAALPIMLRGAALRFWLS 267
>gnl|CDD|237362 PRK13356, PRK13356, aminotransferase; Provisional.
Length = 286
Score = 29.9 bits (68), Expect = 1.8
Identities = 59/242 (24%), Positives = 88/242 (36%), Gaps = 44/242 (18%)
Query: 100 DHMVHRGHGVFDTAIILNGYLYELDVHLDRFLRSAVSARISSPFPRSTLRSILVQLTAAS 159
DH G VFD A G +LD+H R RSA + + + ++
Sbjct: 27 DHAAWLGSTVFDGARAFEGVTPDLDLHCARVNRSAEALGLKPTVSAEEIEAL-------- 78
Query: 160 QCKKGTLRFWLTAGPGDFLLSPAGCPTSAFYAVVIDD----DFSQCKE--------GVKV 207
++G RF + P F + V D F+ C E G +
Sbjct: 79 -AREGLKRF---DPDTALYIRPMYWAEDGFASGVAPDPESTRFALCLEEAPMPEPTGFSL 134
Query: 208 ITSSIPMKPRLFATVKNVN----YLPNVLAKMEAEDKGASASIWIDEDGYVAEGPNVNVA 263
S +P L + Y N A EA +G ++ +D G VAE NV
Sbjct: 135 TLSPF-RRPTLEMAPTDAKAGCLYPNNARALREARSRGFDNALVLDMLGNVAETATSNV- 192
Query: 264 FITHDKELVLP-----FFDKILSGCTAKRLLELAPKLVEQGRLKSVKTANLTVDEAKGAA 318
F+ D + P F L+G T +R++ L L E G +V LT ++ A
Sbjct: 193 FMVKDGVVFTPVPNGTF----LNGITRQRVIAL---LREDG--VTVVETTLTYEDFLEAD 243
Query: 319 EM 320
E+
Sbjct: 244 EV 245
>gnl|CDD|238686 cd01390, HMGB-UBF_HMG-box, HMGB-UBF_HMG-box, class II and III
members of the HMG-box superfamily of DNA-binding
proteins. These proteins bind the minor groove of DNA
in a non-sequence specific fashion and contain two or
more tandem HMG boxes. Class II members include
non-histone chromosomal proteins, HMG1 and HMG2, which
bind to bent or distorted DNA such as four-way DNA
junctions, synthetic DNA cruciforms, kinked
cisplatin-modified DNA, DNA bulges, cross-overs in
supercoiled DNA, and can cause looping of linear DNA.
Class III members include nucleolar and mitochondrial
transcription factors, UBF and mtTF1, which bind
four-way DNA junctions.
Length = 66
Score = 27.6 bits (62), Expect = 1.9
Identities = 14/47 (29%), Positives = 22/47 (46%), Gaps = 6/47 (12%)
Query: 38 LFSVEAENGSEFKA-HMFSSSSELLQKLQEKWSSV---KKKPYPAMY 80
LFS E + K + +S +E+ + L EKW + +KK Y
Sbjct: 10 LFS--QEQRPKLKKENPDASVTEVTKILGEKWKELSEEEKKKYEEKA 54
>gnl|CDD|234130 TIGR03161, ribazole_CobZ, alpha-ribazole phosphatase CobZ.
Sequences in the seed alignment were the experimentally
characterized CobZ of the methanogenic archaeon
Methanosarcina mazei, and other archaeal proteins found
similarly next to or very near to other cobalamin
biosynthesis genes. CobZ replaces the
alpha-ribazole-phosphate phosphatase (EC 3.1.3.73)
called CobC in analogous bacterial pathways for
cobalamin biosynthesis under anaerobic conditions
[Biosynthesis of cofactors, prosthetic groups, and
carriers, Heme, porphyrin, and cobalamin].
Length = 140
Score = 28.5 bits (64), Expect = 3.1
Identities = 17/58 (29%), Positives = 25/58 (43%), Gaps = 7/58 (12%)
Query: 306 TANLTVDEAKGAAEMMYVGSTLPLLAITVWDEQPIGDGNVGELTMALSDLLWEDMVAG 363
N+ DE GAA Y+G L +D++ G + EL L +D+V G
Sbjct: 79 PVNIVADELLGAALAEYIGGFKALFNFKRYDKKK--PGILAELPPFL-----DDVVGG 129
>gnl|CDD|220767 pfam10459, Peptidase_S46, Peptidase S46. Dipeptidyl-peptidase 7
(DPP-7) is the best characterized member of this family.
It is a serine peptidase that is located on the cell
surface and is predicted to have two N-terminal
transmembrane domains.
Length = 696
Score = 29.5 bits (67), Expect = 3.3
Identities = 17/90 (18%), Positives = 30/90 (33%), Gaps = 12/90 (13%)
Query: 234 KMEAEDKGASASIWIDEDGYVAEGPNVNVAFITHDKELV----LPFFDKILSGCTAKRLL 289
+ + E +D+ V A + +EL+ LP DK+L +
Sbjct: 415 EQQLERIDKPYDAEVDKA--------VLAAMLEEYRELLGADRLPAVDKVLGKESKGDPE 466
Query: 290 ELAPKLVEQGRLKSVKTANLTVDEAKGAAE 319
A +L +L ++ K A E
Sbjct: 467 AYADRLYAGSKLTDPDGRLALLEGDKAAVE 496
>gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the
metal-type transporters. This family includes
transporters involved in the uptake of various metallic
cations such as iron, manganese, and zinc. The ATPases
of this group of transporters are very similar to
members of iron-siderophore uptake family suggesting
that they share a common ancestor. The best
characterized metal-type ABC transporters are the
YfeABCD system of Y. pestis, the SitABCD system of
Salmonella enterica serovar Typhimurium, and the SitABCD
transporter of Shigella flexneri. Moreover other
uncharacterized homologs of these metal-type
transporters are mainly found in pathogens like
Haemophilus or enteroinvasive E. coli isolates.
Length = 213
Score = 28.7 bits (65), Expect = 4.2
Identities = 9/28 (32%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
Query: 262 VAFITHDKELVLPFFDKILSGCTAKRLL 289
+ +THD LVL +FD++L + ++
Sbjct: 185 ILVVTHDLGLVLEYFDRVL--LLNRTVV 210
>gnl|CDD|223000 PHA03144, PHA03144, helicase-primase primase subunit; Provisional.
Length = 746
Score = 29.3 bits (66), Expect = 4.5
Identities = 29/143 (20%), Positives = 58/143 (40%), Gaps = 15/143 (10%)
Query: 127 LDRFLRSAVSARISSPFPRSTLRSILVQLTAASQCKKGTLRFWLTAGPGDFLLSPAGC-P 185
L LR+AV+ + R R +L + ++ FW P + P+ P
Sbjct: 599 LRALLRAAVADSADAETLRQAAREACDRLVLEAFARRLDAEFWSVPTP---ISDPSDPLP 655
Query: 186 TSAF-YAVVIDDDFSQCKEGVKVITSS-----IPMK----PRLFATVKNVNYLPNVLAKM 235
+AF ++D D + V+V +P P + + ++L +LA+
Sbjct: 656 AAAFRGGALLDADHGS-RRVVRVCGGDCEPVPVPWDLYPRPLVLPPIDCAHHLRPILAEA 714
Query: 236 EAEDKGASASIWIDEDGYVAEGP 258
E+ GA +++W +++ + P
Sbjct: 715 ESMLNGALSALWGEDEPFEVTYP 737
>gnl|CDD|213310 cd05945, DltA, D-alanine:D-alanyl carrier protein ligase (DltA).
DltA belongs to the class I AMP-forming adenylation
domain superfamily, which also includes acetyl-CoA
synthetase, luciferase, and the adenylation domains of
non-ribosomal synthetases. It catalyzes the two-step
activation reaction of D-alanine: the formation of a
substrate-AMP molecule as an intermediate, and then the
transfer of the amino acid adenylate to teichoic acid in
the biosynthesis of lipoteichoic acid (LTA) and wall
teichoic acid (WTA) in gram-positive bacteria.
Length = 447
Score = 28.3 bits (64), Expect = 6.6
Identities = 14/45 (31%), Positives = 18/45 (40%), Gaps = 2/45 (4%)
Query: 306 TANLTVDEAKGAAEMMYVGSTLPLLAITVWDEQ--PIGDGNVGEL 348
TA E E + +G P L + DE P+ G GEL
Sbjct: 257 TAYEVTPEPLSRNEPLPIGYPKPGLRALILDEDGRPVPPGEEGEL 301
>gnl|CDD|235369 PRK05231, PRK05231, homoserine kinase; Provisional.
Length = 319
Score = 27.8 bits (63), Expect = 8.6
Identities = 26/86 (30%), Positives = 35/86 (40%), Gaps = 27/86 (31%)
Query: 109 VFDTAIILNGYLYELDVHLDR-----FLRSAVSARISSPFPRSTLRSILVQLTAASQ--- 160
++D AI LN + +E D LD L + S R LTAA +
Sbjct: 221 LYDVAITLNDWCFEADGSLDATKARALLAAYQSVR---------------PLTAAERAAL 265
Query: 161 ---CKKGTLRFWLTAGPGDFLLSPAG 183
+ LRFWL+ D+LL AG
Sbjct: 266 PVMLRGAALRFWLSR-LYDWLLPRAG 290
>gnl|CDD|178391 PLN02794, PLN02794, cardiolipin synthase.
Length = 341
Score = 27.9 bits (62), Expect = 9.8
Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 9/58 (15%)
Query: 242 ASASIWIDEDGYVAEGPNVNVAFITHDKELVLPFFDKILSGCTAKRLLE---LAPKLV 296
+ AS W+D GYVA +N ++ + P DK+L GC A ++E L P LV
Sbjct: 178 SGASDWLD--GYVARKMGINSVVGSY----LDPLADKVLIGCVALAMVEKDLLHPGLV 229
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.322 0.137 0.414
Gapped
Lambda K H
0.267 0.0777 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 18,937,708
Number of extensions: 1820605
Number of successful extensions: 1589
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1540
Number of HSP's successfully gapped: 42
Length of query: 375
Length of database: 10,937,602
Length adjustment: 98
Effective length of query: 277
Effective length of database: 6,590,910
Effective search space: 1825682070
Effective search space used: 1825682070
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (26.8 bits)