RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 017245
(375 letters)
>3lul_A 4-amino-4-deoxychorismate lyase; structural genomi center for
structural genomics, JCSG, protein structure INI PSI-2,
pyridoxal phosphate; HET: MSE LLP; 1.78A {Legionella
pneumophila}
Length = 272
Score = 150 bits (381), Expect = 3e-43
Identities = 55/271 (20%), Positives = 102/271 (37%), Gaps = 22/271 (8%)
Query: 95 VIPIDDHMVHRGH---GVFDTAIILNGYLYELDVHLDRFLRSAVSARISSPFPRSTLRSI 151
ID R G+F+T + + +H +R SA I
Sbjct: 16 SFGID----DRIFLGEGLFETIRVNSSKPSFAYMHWERLGNSARQLGIPFEISFDDWFEH 71
Query: 152 LVQLTAASQCKKGTLRFWLTAGPGDFLLSPAGCPTSAFYAVVIDDDFSQCKEGVKVITSS 211
L+Q G ++ L+ GP L+ G + + ++S K V++I+ +
Sbjct: 72 LIQKIQKDNLYHGGIKAILSGGPASRGLAERGQVSQLIFQTF---NYSIQKHPVRLISIN 128
Query: 212 -IPMKPRLFATVKNVNYLPNVLAKMEAEDKGASASIWIDEDGYVAEGPNVNVAFITHDKE 270
+ K +K+VNYL ++A+ +A GA +++ + + +V E N+ F+ +
Sbjct: 129 WLRDKANPLYQLKSVNYLEAIIAQRQAIAVGADDALFFNTENHVTETTCANL-FLIENNI 187
Query: 271 LVLPFFDK-ILSGCTAKRLLELAPKL-VEQGRLKSVKTANLTVDEAKGAAEMMYVGSTLP 328
L P + IL G T RL+ + + V+ +LT + A + S
Sbjct: 188 LYTPRVEDGILPGITRARLISHCQQHKMS------VQEISLTKKRIEDADAVFLTNSLQG 241
Query: 329 LLAITVWDEQPIGDGNVGELTMALSDLLWED 359
+ + D + L LL +D
Sbjct: 242 IRRVLSLDNIIFEVN--HPIIDKLIFLLNQD 270
>3sno_A Hypothetical aminotransferase; D-aminoacid aminotransferase-like
PLP-dependent enzymes, STR genomics; HET: MSE; 1.60A
{Corynebacterium glutamicum}
Length = 315
Score = 149 bits (379), Expect = 1e-42
Identities = 56/287 (19%), Positives = 99/287 (34%), Gaps = 31/287 (10%)
Query: 90 DPAMMVIPIDDHMVHRGHGVFDTAIILNGYLYELDVHLDRFLRSAVSARISSPFP---RS 146
+P + ++ DD + RG G+F+T +I +G+ + H +RF SA + P
Sbjct: 30 NPNLPMVFWDDAALTRGDGIFETLLIRDGHACNVRRHGERFKASAALLGLPEPILEDWEK 89
Query: 147 TLRSILVQLTAASQCKKGTLRFWLTAGPGDFLLSPAGCPTSAFYAVV------------- 193
+ + + + + + L+ G L+ + +
Sbjct: 90 ATQMGIESWYSHPNAGEASCTWTLSRGRSSTGLASGWLTITPVSSDKLAQREHGVSVMTS 149
Query: 194 -----IDDDFSQCKEGVKVITSSIPMKPR--LFATVKNVNYLPNVLAKMEAEDKGASASI 246
ID + + S + P L K + Y N+ A A+ G I
Sbjct: 150 SRGYSIDTGLPGIGKATRGELSKVERTPAPWLTVGAKTLAYAANMAALRYAKSNGFDDVI 209
Query: 247 WIDEDGYVAEGPNVNVAFITHDKELVLPFFD-KILSGCTAKRLLELAPKLVEQGRLKSVK 305
+ D V EG V ++ P IL G T L A E+G K
Sbjct: 210 FTD-GDRVLEGATSTV-VSFKGDKIRTPSPGGDILPGTTQAALFAHAT---EKGW--RCK 262
Query: 306 TANLTVDEAKGAAEMMYVGSTLPLLAITVWDEQPIGDGNVGELTMAL 352
+L++D+ GA + V S + +T D + + + AL
Sbjct: 263 EKDLSIDDLFGADSVWLVSSVRGPVRVTRLDGHKLRKPDNEKEIKAL 309
>1i2k_A 4-amino-4-deoxychorismate lyase; pyridoxal phosphate, PABC; HET:
PLP; 1.79A {Escherichia coli} SCOP: e.17.1.1 PDB:
1et0_A* 1i2l_A*
Length = 269
Score = 147 bits (373), Expect = 5e-42
Identities = 48/263 (18%), Positives = 103/263 (39%), Gaps = 14/263 (5%)
Query: 95 VIPIDDHMVHRGHGVFDTAIILNGYLYELDVHLDRFLRSAVSARISSPFPRSTLRSILVQ 154
+ + D G G F TA +++G + L H+ R + IS F + +
Sbjct: 11 SLAVSDRATQFGDGCFTTARVIDGKVSLLSAHIQRLQDACQRLMISCDFWPQLEQEMK-- 68
Query: 155 LTAASQCKKGTLRFWLTAGPGDFLLSPAGC--PTSAFYAVVIDDDFSQCKE-GVKVITSS 211
T A++ + G L+ ++ G G S T + + + G+ + S
Sbjct: 69 -TLAAEQQNGVLKVVISRGSGGRGYSTLNSGPATRILSVTAYPAHYDRLRNEGITLALSP 127
Query: 212 IPM-KPRLFATVKNVNYLPNVLAKMEAEDKGASASIWIDEDGYVAEGPNVNVAFITHDKE 270
+ + + A +K++N L VL + E A ++ +D +G+V E N+ F
Sbjct: 128 VRLGRNPHLAGIKHLNRLEQVLIRSHLEQTNADEALVLDSEGWVTECCAANL-FWRKGNV 186
Query: 271 LVLPFFDK-ILSGCTAKRLLELAPKLVEQGRLKSVKTANLTVDEAKGAAEMMYVGSTLPL 329
+ P D+ ++G + + L + + + +++E+ A EM+ + +P+
Sbjct: 187 VYTPRLDQAGVNGIMRQFCIRLLAQS----SYQ-LVEVQASLEESLQADEMVICNALMPV 241
Query: 330 LAITVWDEQPIGDGNVGELTMAL 352
+ + + + E L
Sbjct: 242 MPVCACGDVSFSSATLYEYLAPL 264
>2xpf_A 4-amino-4-deoxychorismate lyase; para-aminobenzoic acid, folate
biosynthesis; HET: PLP PG4; 1.75A {Pseudomonas
aeruginosa} PDB: 2y4r_A* 2xpf_B*
Length = 292
Score = 146 bits (371), Expect = 2e-41
Identities = 62/276 (22%), Positives = 108/276 (39%), Gaps = 28/276 (10%)
Query: 95 VIPIDDHMVHRGHGVFDTAIILNGYLYELDVHLDRFLRSAVSARISSPFPRSTLRSILVQ 154
+ + D + G G+F+T + G L+ HL R R++ P + LR L+
Sbjct: 33 ELSVRDRGLAYGDGLFETLAVRAGTPRLLERHLARLEEGC--RRLAIPLDTAALRQELLA 90
Query: 155 LTAASQCKKGTLRFWLTAGPGDFLLSPAGCPTSAFYAVVIDDDFS-----QCKEGVKVIT 209
+ G + +T G G +P + ++ ++GV++
Sbjct: 91 F--CAALGDGVAKLIVTRGEGLRGYAPPAEASPR--RILSGSPRPAYPERHWQQGVRLFA 146
Query: 210 SSIPMKPR-LFATVKNVNYLPNVLAKMEAEDKGASASIWIDEDGYVAEGPNVNVAFITHD 268
+ + L A +K++N L VLA+ E D G + + +D V EG N+ + D
Sbjct: 147 CRTRLAEQPLLAGLKHLNRLEQVLARAEWSDAGHAEGLMLDVHERVVEGVFSNL-LLVLD 205
Query: 269 KELVLPFFDK-ILSGCTAKRLLELAPKL---VEQGRLKSVKTANLTVDEAKGAAEMMYVG 324
LV P + ++G LLE A + + +++ E A E+
Sbjct: 206 GTLVAPDLRRCGVAGVMRAELLERAEGIGVPLAIRD--------VSMAELATADEVFLCN 257
Query: 325 STLPLLAITVWDEQPIGDGNVGELTMALSDLLWEDM 360
S + + DE VGELT L D L +D+
Sbjct: 258 SQFGIWPVRALDEHVWP---VGELTRKLQDQLRDDL 290
>3daa_A D-amino acid aminotransferase; pyridoxal phosphate, transaminase;
HET: PDD; 1.90A {Bacillus SP} SCOP: e.17.1.1 PDB:
4daa_A* 3lqs_A* 1daa_A* 2daa_A* 5daa_A* 1g2w_A* 1a0g_A*
2dab_A*
Length = 277
Score = 145 bits (369), Expect = 2e-41
Identities = 69/266 (25%), Positives = 107/266 (40%), Gaps = 17/266 (6%)
Query: 96 IPIDDHMVHRGHGVFDTAIILNGYLYELDVHLDRFLRSAVSARISSPFPRSTLRSILVQL 155
I +D G GV++ + NG ++ ++ H+DR SA RI+ P+ + +L +L
Sbjct: 17 IDKEDRGYQFGDGVYEVVKVYNGEMFTVNEHIDRLYASAEKIRITIPYTKDKFHQLLHEL 76
Query: 156 TAASQCKKGTLRFWLTAGPGDFLLSPAGC---PTSAFYAVVIDDDFSQCKEGVKVITSS- 211
++ G + F +T G P Y ++GVK
Sbjct: 77 VEKNELNTGHIYFQVTRGTSPRAHQFPENTVKPVIIGYTKENPRPLENLEKGVKATFVED 136
Query: 212 IPMKPRLFATVKNVNYLPNVLAKMEAEDKGAS-ASIWIDEDGYVAEGPNVNVAFITHDKE 270
I +K++N L VLAK EA +KG A + + V EG + NV F D
Sbjct: 137 IRWLRC---DIKSLNLLGAVLAKQEAHEKGCYEA--ILHRNNTVTEGSSSNV-FGIKDGI 190
Query: 271 LV-LPFFDKILSGCTAKRLLELAPKLVEQGRLKSVKTANLTVDEAKGAAEMMYVGSTLPL 329
L P + IL G T ++ A ++ + VK T EA E+ +T +
Sbjct: 191 LYTHPANNMILKGITRDVVIACANEI----NMP-VKEIPFTTHEALKMDELFVTSTTSEI 245
Query: 330 LAITVWDEQPIGDGNVGELTMALSDL 355
+ D + I DG VGE T L
Sbjct: 246 TPVIEIDGKLIRDGKVGEWTRKLQKQ 271
>3csw_A BCAT, putative branched-chain-amino-acid aminotransfera; TM0831,
putative branched-chain amino acid aminotransferase;
HET: PLP CIT; 2.15A {Thermotoga maritima MSB8}
Length = 285
Score = 121 bits (306), Expect = 3e-32
Identities = 51/284 (17%), Positives = 96/284 (33%), Gaps = 27/284 (9%)
Query: 84 FGGIILDPAMMVIPIDDHMVHRGHGVFDTAIILNGYLYELDVHLDRFLRSAVSARISSPF 143
+ G + + V++T + + H R RSA +
Sbjct: 17 WRGKFRRADEISLDFSLFEKSLQGAVYETLRTYSRAPFAAYKHYTRLKRSADFFNLPLSL 76
Query: 144 PRSTLRSILVQLTAASQCKKGTLRFWLTAGPGDFLLSPAGCPTSAFYAVVIDDDFSQCKE 203
+L + ++ ++ +L G+ L + +
Sbjct: 77 SFDEFTKVLKAGADEFK-QEVRIKVYLFPDSGEVLFVFSPLNIPDL------------ET 123
Query: 204 GVKVITSSI--PMKPRLFATVKNVNYLPNVLAKMEAEDKGASASIWIDEDGYVAEGPNVN 261
GV+V S++ +K VLA+ E I + +G V EG N
Sbjct: 124 GVEVKISNVRRIPDLSTPPALKITGRTDIVLARREI--VDCYDVILLGLNGQVCEGSFSN 181
Query: 262 VAFITHDKELVLPFFD-KILSGCTAKRLLELAPKL-VEQGRLKSVKTANLTVDEAKGAAE 319
V F+ + +L+ P D IL G T + +++LA L + V+ + V E A E
Sbjct: 182 V-FLVKEGKLITPSLDSGILDGITRENVIKLAKSLEIP------VEERVVWVWELFEADE 234
Query: 320 MMYVGSTLPLLAITVWDEQPIGDGNVGELTMALSDLLWEDMVAG 363
M ++ ++ + +E + G +T L + E V
Sbjct: 235 MFLTHTSAGVVPVRRLNEHSFFEEEPGPVTATLMENF-EPFVLN 277
>3u0g_A Putative branched-chain amino acid aminotransfera; structural
genomics, seattle structural genomics center for
infectious disease; 1.90A {Burkholderia pseudomallei}
Length = 328
Score = 119 bits (301), Expect = 4e-31
Identities = 72/289 (24%), Positives = 115/289 (39%), Gaps = 38/289 (13%)
Query: 96 IPIDDHMVHRGHGVF------DTAIILNGYLYELDVHLDRFLRSAVSARISSPFPRSTLR 149
I + H +H G GVF TA ++ L H R L SA ++ PF + TL
Sbjct: 45 IHVLTHTLHYGMGVFEGVRAYKTADG-GTAIFRLKEHTKRLLNSAKIFQMDVPFDQETLE 103
Query: 150 SILVQLTAASQCKKGTLRFWLTAGPGDFLLSPAGCPTSAFYAVV-----IDDDFSQCKEG 204
+ + ++ + LR + G +S G A + ++ +G
Sbjct: 104 AAQRDVVRENKLESCYLRPIIWIGSEKLGVSAKGNTIHVAIAAWPWGAYLGEEGL--AKG 161
Query: 205 VKVITSS--------IPMKPRLFATVKNV-NYLPNVLAKMEAEDKGASASIWIDEDGYVA 255
++V TSS ++ K Y+ ++LA EA G ++ +D DGYV+
Sbjct: 162 IRVKTSSFTRHHVNVSMVR------AKASGWYVNSILANQEATADGYDEALLLDVDGYVS 215
Query: 256 EGPNVNVAFITHDKELVLPFFDKILSGCTAKRLLELAPKL-VEQGRLKSVKTANLTVDEA 314
EG N F+ + +L P L G T ++ LA + +E V +T DE
Sbjct: 216 EGSGENF-FLVNRGKLYTPDLASCLDGITRDTVITLAKEAGIE------VIEKRITRDEV 268
Query: 315 KGAAEMMYVGSTLPLLAITVWDEQPIGDGNVGELTMALSDLLWEDMVAG 363
A E + G+ + I D + IG G G +T L D+V G
Sbjct: 269 YTADEAFFTGTAAEVTPIRELDNRTIGGGARGPITEKLQSAF-FDVVNG 316
>2zgi_A Putative 4-amino-4-deoxychorismate lyase; TTHA0621, PLP cofactor,
pyridoxal enzyme, structural NPPSFA; HET: PLP PGE; 1.93A
{Thermus thermophilus}
Length = 246
Score = 114 bits (287), Expect = 7e-30
Identities = 55/219 (25%), Positives = 89/219 (40%), Gaps = 18/219 (8%)
Query: 87 IILDPAMMVIPIDDHMVHRGHGVFDTAIILNGYLYELDVHLDRFLRSAVSARISSPFPRS 146
+L+ + + + + ++ G VF T G L+ HL R R A++ +S P +
Sbjct: 2 RLLNGTPLALALPEAFLYHGASVFTTLRAEGGRPLWLEEHLARLRRHALALGLSYPGDEA 61
Query: 147 TLRSILVQLTAASQCKKGTLRFWLTAGPGDFLLSPAGCPTSAFYAVVIDDDFSQCKEGVK 206
L + + + K LR T G G L +EGV+
Sbjct: 62 FLEDL--EALLRAFPKAPCLRLRFTVGEGVRLSEARPYAPLPLSLY---------REGVR 110
Query: 207 VITSSIPMKPRLFATVKNVNYLPNVLAKMEAEDKGASASIWIDEDGYVAEGPNVNVAFIT 266
V + + P L A K NYLP LA EA +GA + +D G+V +G + +
Sbjct: 111 VRLTGYRVHPDL-ARYKTGNYLPYRLALEEARKEGAFEGLLLDAFGHVVDGSRTSP-LLF 168
Query: 267 HDKELVLPFFDKILSGCTAKRLLELAPKL---VEQGRLK 302
+ L L + L G T +++ E A L VE+G +
Sbjct: 169 REGTLYLL--EGGLEGITREKVAEAARGLGLRVERGLFR 205
>2eiy_A ILVE, branched-chain amino acid aminotransferase; PLP-dependent
enzyme; HET: PLP; 1.35A {Thermus thermophilus} PDB:
1wrv_A* 2ej0_A* 2ej2_A* 2ej3_A*
Length = 308
Score = 114 bits (289), Expect = 2e-29
Identities = 71/288 (24%), Positives = 118/288 (40%), Gaps = 36/288 (12%)
Query: 96 IPIDDHMVHRGHGVF------DTAIILNGYLYELDVHLDRFLRSAVSARISSPFPRSTLR 149
+ H +H G VF +TA ++ L H+ RF SA R+ PF L
Sbjct: 22 TSVLSHALHYGTSVFEGIRAYETAK--GPAIFRLKEHVKRFYNSAKVLRMEIPFAPEELE 79
Query: 150 SILVQLTAASQCKKGTLRFWLTAGPGDFLLSPAGCPTS--AFYAVVIDDDFSQ--CKEGV 205
+ ++ + + +R G ++P + A + ++G
Sbjct: 80 EAIKEVVRRNGYRSCYIRPLAWMGAKALGVNPLPNNPAEVMVAAWEWGAYLGEEAVRKGA 139
Query: 206 KVITSS--------IPMKPRLFATVKNV-NYLPNVLAKMEAEDKGASASIWIDEDGYVAE 256
++ITSS +P K K NY+ + LAKMEA GA ++ +DE+GYVAE
Sbjct: 140 RLITSSWARFPANVMPGK------AKVGGNYVNSALAKMEAVAAGADEALLLDEEGYVAE 193
Query: 257 GPNVNVAFITHDKELVLPFFDKILSGCTAKRLLELAPKL-VEQGRLKSVKTANLTVDEAK 315
G N+ F D + L G T ++ +A L E V+ T D+
Sbjct: 194 GSGENL-FFVRDGVIYALEHSVNLEGITRDSVIRIAKDLGYE------VQVVRATRDQLY 246
Query: 316 GAAEMMYVGSTLPLLAITVWDEQPIGDGNVGELTMALSDLLWEDMVAG 363
A E+ G+ + +++ D +PIG G G + + L ++ + V G
Sbjct: 247 MADEVFMTGTAAEVTPVSMIDWRPIGKGTAGPVALRLREVY-LEAVTG 293
>1iye_A Branched-chain amino acid aminotransferase; hexamer, PLP; HET: PGU;
1.82A {Escherichia coli} SCOP: e.17.1.1 PDB: 1i1l_A*
1i1m_A* 1iyd_A* 1i1k_A* 1a3g_A*
Length = 309
Score = 111 bits (281), Expect = 2e-28
Identities = 59/289 (20%), Positives = 102/289 (35%), Gaps = 37/289 (12%)
Query: 96 IPIDDHMVHRGHGVF------DTAIILNGYLYELDVHLDRFLRSAVSARISSPFPRSTLR 149
+ + H +H G VF D+ ++ H+ R SA R L
Sbjct: 23 VHVMSHALHYGTSVFEGIRCYDSHK--GPVVFRHREHMQRLHDSAKIYRFPVSQSIDELM 80
Query: 150 SILVQLTAASQCKKGTLRFWLTAGPGDFLLSPAGCPTS--AFYAVVIDDDFSQ--CKEGV 205
+ + +R + G ++P ++ A ++G+
Sbjct: 81 EACRDVIRKNNLTSAYIRPLIFVGDVGMGVNPPAGYSTDVIIAAFPWGAYLGAEALEQGI 140
Query: 206 KVITSS--------IPMKPRLFATVKNV-NYLPNVLAKMEAEDKGASASIWIDEDGYVAE 256
+ SS IP K NYL ++L EA G I +D +GY++E
Sbjct: 141 DAMVSSWNRAAPNTIPTA------AKAGGNYLSSLLVGSEARRHGYQEGIALDVNGYISE 194
Query: 257 GPNVNVAFITHDKELVLP-FFDKILSGCTAKRLLELAPKL-VEQGRLKSVKTANLTVDEA 314
G N+ F D L P F L G T +++LA +L +E V+ L+ +
Sbjct: 195 GAGENL-FEVKDGVLFTPPFTSSALPGITRDAIIKLAKELGIE------VREQVLSRESL 247
Query: 315 KGAAEMMYVGSTLPLLAITVWDEQPIGDGNVGELTMALSDLLWEDMVAG 363
A E+ G+ + + D +G+G G +T + + G
Sbjct: 248 YLADEVFMSGTAAEITPVRSVDGIQVGEGRCGPVTKRIQQAF-FGLFTG 295
>3qqm_A MLR3007 protein; structural genomics, joint center for structural
genomics, J protein structure initiative, PSI-biology,
transferase; HET: LLP; 2.30A {Mesorhizobium loti}
Length = 221
Score = 98.1 bits (245), Expect = 3e-24
Identities = 42/231 (18%), Positives = 67/231 (29%), Gaps = 30/231 (12%)
Query: 100 DHMVHRGHGVFDTAIILNG-YLYELDVHLDRFLRSAVSARISSPFPRSTLRSILVQLTAA 158
+ +T G D HL R SA A + + +L
Sbjct: 9 RDGDTADFELIETMRWQPGTSFLRFDRHLARLYGSA--AELGFACDPQRIAEVLSDALDG 66
Query: 159 SQCKKGTLRFWLTAGPGDFLLSPAGCPTSAFYAVVIDDDFSQCKEGVKVITSSIPMKPR- 217
++ R L GD S P A + + + + +
Sbjct: 67 AR-TAMRTRLALARN-GDATASAQ--PYEPLAA----------DKVWILRLARTRLDSQN 112
Query: 218 LFATVKNVNYLPNVLAKMEAEDKGASASIWIDEDGYVAEGPNVNVAFITHDKELVLPFFD 277
K A+ E A + +E G + EG NV D L P D
Sbjct: 113 TLLRHKTSRRQLYTHARSEYLVTQADEVLLANERGEICEGTITNVFADFGDGVLATPRLD 172
Query: 278 K-ILSGCTAKRLLELAPKLVEQGRLKSVKTANLTVDEAKGAAEMMYVGSTL 327
+L G LL+ + A + D+ K A ++VG++L
Sbjct: 173 CGLLPGVLRAELLDEGR----------AEEAIYSYDDLKSAKA-LFVGNSL 212
>3ceb_A D-aminoacid aminotransferase-like PLP-dependent E; joint center for
structural genomics, protein structure initiative,
PSI-2, lyase; HET: LLP; 2.40A {Haemophilus somnus}
Length = 194
Score = 69.4 bits (170), Expect = 4e-14
Identities = 39/225 (17%), Positives = 71/225 (31%), Gaps = 39/225 (17%)
Query: 108 GVFDTAIILNGYLYELDVHLDRFLRSAVSARISSPFPRSTLRSILVQLTAASQCKKGTLR 167
+F+T +I G + H R+ +S + L I+ + TA ++G +R
Sbjct: 6 PLFETILIEQGQAKNISYHQQRYEKSLLKFYPKMKLQPFDLAKIIAKHTALFTHREGLIR 65
Query: 168 FWLTAGPGDFLLSPA---GCPTSAFYAVVIDDDFSQCKEGVKVITSSIPMKPRLFATVKN 224
+ D++L F V D K +
Sbjct: 66 CRIDYNHHDYVLQCFPYQQKVYRTFKPVFCDHIDYSLK-------------------FSD 106
Query: 225 VNYLPNVLAKMEAEDKGASASIWIDEDGYVAEGPNVNVAFITHDKELVLPFFDKILSGCT 284
L N+L + E D I I G V + N+ F + + + P +L G
Sbjct: 107 RTLLNNLLKQKEECD-----EIMIIRQGKVTDCSIGNLIFR-QNNQWITP-DKPLLEGTQ 159
Query: 285 AKRLLELAPKLVEQGRLKSVKTANLTVDEAKGAAEMMYVGSTLPL 329
+LLE K + + ++ E+ + + L
Sbjct: 160 RAKLLE----------QKKIIAREIFFEDLAQYEEIRLINAMNGL 194
>2coi_A Branched chain aminotransferase 1, cytosolic; PLP-dependent enzyme;
HET: PLP GBN; 1.90A {Homo sapiens} PDB: 2cog_A* 2coj_A*
2abj_A*
Length = 386
Score = 60.4 bits (147), Expect = 2e-10
Identities = 66/327 (20%), Positives = 102/327 (31%), Gaps = 108/327 (33%)
Query: 46 GSEFKAHMFSSSSELLQKLQEKWSSVKKKPYPAMYSSIFGGIILDPAMMVIPIDDHMVHR 105
G+ F HM + + W KP + L P + H
Sbjct: 50 GTVFTDHMLTVEW----SSEFGWEKPHIKPL--------QNLSLHPGSSAL-------HY 90
Query: 106 GHGVF---------DTAIILNGYLYELDVHLDRFLRSAVSARISSP-FPRSTLRSILVQL 155
+F D I L++ ++++DR RSA R + P F + L + QL
Sbjct: 91 AVELFEGLKAFRGVDNKI----RLFQPNLNMDRMYRSA--VRATLPVFDKEELLECIQQL 144
Query: 156 TAASQCKKGTLRFWLTAGPGDFL--------------LSPAG--------CPTSAFYAVV 193
Q W+ L + P ++
Sbjct: 145 VKLDQE-------WVPYSTSASLYIRPTFIGTEPSLGVKKPTKALLFVLLSPVGPYF--- 194
Query: 194 IDDDFSQCKEGVKVITSSIPMKP-RLFATVKNV--------------NYLPNVLAKMEAE 238
G P L+A K V NY ++ A+ EA
Sbjct: 195 --------SSGT--------FNPVSLWANPKYVRAWKGGTGDCKMGGNYGSSLFAQCEAV 238
Query: 239 DKGASASIWID-EDGYVAEGPNVNVAFI----THDKELVLPFFD-KILSGCTAKRLLELA 292
D G +W+ ED + E +N+ ++EL P D IL G T + +L+LA
Sbjct: 239 DNGCQQVLWLYGEDHQITEVGTMNLFLYWINEDGEEELATPPLDGIILPGVTRRCILDLA 298
Query: 293 PKLVEQGRLKSVKTANLTVDEAKGAAE 319
+ G K V LT+D+ A E
Sbjct: 299 H---QWGEFK-VSERYLTMDDLTTALE 321
>2a1h_A Branched chain aminotransferase; fold type IV; HET: PLP GBN; 1.80A
{Homo sapiens} SCOP: e.17.1.1 PDB: 1ekp_A* 1ekv_A*
1ekf_A* 1kta_A* 1kt8_A* 2hhf_B* 2hhf_A* 2hgw_A* 2hg8_A*
2hgx_A* 2hdk_A*
Length = 365
Score = 57.6 bits (140), Expect = 2e-09
Identities = 62/327 (18%), Positives = 101/327 (30%), Gaps = 109/327 (33%)
Query: 46 GSEFKAHMFSSSSELLQKLQEKWSSVKKKPYPAMYSSIFGGIILDPAMMVIPIDDHMVHR 105
G F HM + W + +P+ + L PA + H
Sbjct: 31 GKTFTDHMLMVEWN-----DKGWGQPRIQPF--------QNLTLHPASSSL-------HY 70
Query: 106 GHGVF---------DTAIILNGYLYELDVHLDRFLRSAVSARISSP-FPRSTLRSILVQL 155
+F D + L+ +++DR LRSA R+ P F + L + +L
Sbjct: 71 SLQLFEGMKAFKGKDQQV----RLFRPWLNMDRMLRSA--MRLCLPSFDKLELLECIRRL 124
Query: 156 TAASQCKKGTLRFWLTAGPGDFL--------------LSPAG--------CPTSAFYAVV 193
+ W+ G L +S CP A++
Sbjct: 125 IEVD-------KDWVPDAAGTSLYVRPVLIGNEPSLGVSQPRRALLFVILCPVGAYF--- 174
Query: 194 IDDDFSQCKEGVKVITSSIPMKP-RLFATVKNV--------------NYLPNVLAKMEAE 238
G + P L A + NY P VL + EA
Sbjct: 175 --------PGG--------SVTPVSLLADPAFIRAWVGGVGNYKLGGNYGPTVLVQQEAL 218
Query: 239 DKGASASIWID-EDGYVAEGPNVNVAFITHDK----ELVLPFFD-KILSGCTAKRLLELA 292
+G +W+ D + E +N+ + ELV P + IL G + LL++A
Sbjct: 219 KRGCEQVLWLYGPDHQLTEVGTMNIFVYWTHEDGVLELVTPPLNGVILPGVVRQSLLDMA 278
Query: 293 PKLVEQGRLKSVKTANLTVDEAKGAAE 319
G + V +T+ + A E
Sbjct: 279 Q---TWGEFR-VVERTITMKQLLRALE 301
>3dth_A Branched-chain amino acid aminotransferase; open twisted
alpha/beta; HET: PLP OBZ; 1.85A {Mycobacterium
smegmatis} PDB: 3dtf_A* 3dtg_A* 3jz6_A* 3ht5_A*
Length = 372
Score = 56.1 bits (136), Expect = 6e-09
Identities = 81/373 (21%), Positives = 125/373 (33%), Gaps = 117/373 (31%)
Query: 46 GSEFKAHMFSSSSELLQKLQEKWSSVKKKPYPAMYSSIFGGIILDPAMMVIPIDDHMVHR 105
G + HM S + E W + + PY G I LDP+ +V+ H
Sbjct: 36 GKYYTDHMVSIDY----TVDEGWHNAQVIPY--------GPIQLDPSAIVL-------HY 76
Query: 106 GHGVF---------DTAIILNGYLYELDVHLDRFLRSAVSARISSP-FPRSTLRSILVQL 155
G +F D +I + + + R SA R++ P P L QL
Sbjct: 77 GQEIFEGLKAYRWADGSI----VSFRPEANAARLQSSA--RRLAIPELPEEVFIESLRQL 130
Query: 156 TAASQCKKGTLRFWLTAGPGDFLL---------------SPAG--------CPTSAFYA- 191
A + W+ G+ L P+ P A++
Sbjct: 131 IAVDEK-------WVPPAGGEESLYLRPFVIATEPGLGVRPSNEYRYLLIASPAGAYFKG 183
Query: 192 ------VVIDDDFSQCKEG----VKVITSSIPMKPRLFATVKNVNYLPNVLAKMEAEDKG 241
V + ++ + G K NY ++LA+ +A + G
Sbjct: 184 GIKPVSVWLSHEYVRASPGGTGAAKFGG----------------NYAASLLAQAQAAEMG 227
Query: 242 ASASIWID--EDGYVAEGPNVNVAFITHD---KELVLPFFD-KILSGCTAKRLLELAPKL 295
+W+D E YV E +N+ F+ LV P +L G T LL+LA
Sbjct: 228 CDQVVWLDAIERRYVEEMGGMNLFFVFGSGGSARLVTPELSGSLLPGITRDSLLQLATDA 287
Query: 296 ---VEQGRLKSVK-----TANLTVDEAKG---AAEMMYVGSTLPLLAITVWDEQ-PIGDG 343
VE+ ++ V + E AA + V + D + I DG
Sbjct: 288 GFAVEERKI-DVDEWQKKAGAGEITEVFACGTAAVITPVSH------VKHHDGEFTIADG 340
Query: 344 NVGELTMALSDLL 356
GE+TMAL D L
Sbjct: 341 QPGEITMALRDTL 353
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 55.8 bits (134), Expect = 1e-08
Identities = 62/452 (13%), Positives = 109/452 (24%), Gaps = 199/452 (44%)
Query: 49 FKAHMFS-------SSSELLQKLQEKWSSVKKKPYPAMYSSIFGG--------------- 86
A + + S+S L + + E + +IFGG
Sbjct: 127 ITARIMAKRPFDKKSNSALFRAVGEG----NAQLV-----AIFGGQGNTDDYFEELRDLY 177
Query: 87 ---------IILDPAMMVIPI----DDHMVHRGHGVFDTAIILNGYLYELDVHLDR-FLR 132
+I A + + D G + + +L D+ +L
Sbjct: 178 QTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQG-LN----ILEWLENPSNTPDKDYLL 232
Query: 133 SA-VSARISSPFPRSTLRSILVQLTAASQ----CKKGTLRFWLTAGPGDF---LLSPAGC 184
S +S P L+ + + K PG+ L G
Sbjct: 233 SIPIS------CP-------LIGVIQLAHYVVTAKLLGFT------PGELRSYLKGATGH 273
Query: 185 PTSAFYAVVI-----DDDF---------------SQCKEGV-------KVITSSI----- 212
AV I + F +C E ++ S+
Sbjct: 274 SQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEG 333
Query: 213 ---PM-------KPRLFATVKNVN-YLPNVLAKMEAEDKGASASIWIDEDGYVAEGP--- 258
PM + ++ V N +LP K S+ V GP
Sbjct: 334 VPSPMLSISNLTQEQVQDYVNKTNSHLP--------AGKQVEISLVNGAKNLVVSGPPQS 385
Query: 259 --NVNVAF-------------ITHDKE--------LVL--PFFDKILSGCTAKRLLELAP 293
+N+ I + L + PF +L + +L
Sbjct: 386 LYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVK 445
Query: 294 KLVEQGRLKSVKTANLTVDEAKGAAEMMYVGSTLPLLAITVWDEQPIGDGN-----VGEL 348
V + + I V+D DG+ G +
Sbjct: 446 NNVS------------------------FNAKD---IQIPVYD---TFDGSDLRVLSGSI 475
Query: 349 TMALSDLL------WEDMVAGPETQRHCVSYD 374
+ + D + WE T H + +
Sbjct: 476 SERIVDCIIRLPVKWETTTQFKAT--HILDFG 505
Score = 40.4 bits (94), Expect = 0.001
Identities = 39/256 (15%), Positives = 83/256 (32%), Gaps = 83/256 (32%)
Query: 147 TLRSILVQLTAASQCKKGTLRFWLTAGPGDFLLSPAGCPTSA-FYAVVIDDDFSQCKEGV 205
+ R + L+ G+L L+ PT++ F A + + F++
Sbjct: 5 STRPL--TLS------HGSLEH-------VLLV-----PTASFFIASQLQEQFNK----- 39
Query: 206 KVITSSIPMKPRLFATVKNVNYLPNVLAKMEAEDKGAS-ASIWIDEDGYVAEG--PNVNV 262
LP A+D+ + A + GYV+ P+
Sbjct: 40 ---------------------ILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVG 78
Query: 263 AFITHDKELVLPFFDKILSG----CTAKRLLELAPKLVEQGR--LKSVKTANLTVDE--- 313
F + F + L G A +LL+ + + + +K+ TA +
Sbjct: 79 QFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFD 138
Query: 314 -----------AKGAAEMMYV----GSTLPLLAITVWDE-QPIGD---GNVGELTMALSD 354
+G A+++ + G+T ++E + + VG+L ++
Sbjct: 139 KKSNSALFRAVGEGNAQLVAIFGGQGNTD-----DYFEELRDLYQTYHVLVGDLIKFSAE 193
Query: 355 LLWEDMVAGPETQRHC 370
L E + + ++
Sbjct: 194 TLSELIRTTLDAEKVF 209
Score = 36.2 bits (83), Expect = 0.018
Identities = 58/297 (19%), Positives = 92/297 (30%), Gaps = 107/297 (36%)
Query: 44 ENGSEFKAHMFSSSSELLQKLQEKWSSVKKK--PYPAMYSSIFGGIILDPAMMVI---PI 98
EN + M S S+ +++Q+ + + S+ G +V+ P
Sbjct: 329 ENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNG----AKNLVVSGPPQ 384
Query: 99 DDHMVHRGHGVFDTAIILNGYLYELDVHLDRFLRSAVS----ARISSPFPRSTLRSILVQ 154
LY L++ L + A S +RI PF
Sbjct: 385 S--------------------LYGLNLTLRK--AKAPSGLDQSRI--PF----------- 409
Query: 155 LTAASQCK-KGTLRFWL--TAGPGDF---LLSPAGCPTSAFYAVVIDDDFSQCKEGVKVI 208
S+ K K + RF L + P F LL PA + +I+ D K V
Sbjct: 410 ----SERKLKFSNRF-LPVAS-P--FHSHLLVPA--------SDLINKDLV--KNNVSFN 451
Query: 209 TSS--IPMKPRLFATVKNVNYLPNVLAKMEAEDKGASASIWIDEDGYVAEGPNVN----V 262
IP ++ T + + S I +D + P V
Sbjct: 452 AKDIQIP----VYDTFDGSD--------LRVLSGSISERI-VDC---IIRLP-VKWETTT 494
Query: 263 AF-ITHDKELVLPFFDKILSGCTAKRLLELAPKLVE-QG-RLKSVKTANLTVDEAKG 316
F TH +L F SG L L + + G R+ T ++ D+ G
Sbjct: 495 QFKATH----ILDFGPGGASG-----LGVLTHRNKDGTGVRVIVAGTLDINPDDDYG 542
Score = 35.4 bits (81), Expect = 0.039
Identities = 45/349 (12%), Positives = 89/349 (25%), Gaps = 159/349 (45%)
Query: 12 PVKVTVHV-------LR--FCLVIYCLCLKFCVSCLFSVEAENGSEFKAHMFSSSSELL- 61
PV +T+H +R + +I+ + + + E ++ F S LL
Sbjct: 1669 PVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTE-KIFKEINEHSTSYTFRSEKGLLS 1727
Query: 62 --QKLQEKWSSVKKKPYPAMY---SSIFGGIILDPAMM----VIPIDDHMVHRGH----- 107
Q Q PA+ + F + +IP D GH
Sbjct: 1728 ATQFTQ-----------PALTLMEKAAF-------EDLKSKGLIPADATFA--GHSLGEY 1767
Query: 108 -------GV--FDTAIILNGYLYELDVHLDRFLRSAVSARISSPFPRSTLRSILVQLTAA 158
V ++ + + V R + +Q A
Sbjct: 1768 AALASLADVMSIESLVEV--------VFY---------------------RGMTMQ-VAV 1797
Query: 159 SQCKKGTLRFWLTA-GPGDFLLSPAGCPTSAFYAVVIDDDFSQCKEGVKVITSSIPMKPR 217
+ + G + + A PG V S +E ++ + + +
Sbjct: 1798 PRDELGRSNYGMIAINPG---------------RVAA----SFSQEALQYVVERVGKRTG 1838
Query: 218 LFATVKNVNYLPNVLAKMEAEDKGASASIWIDEDGYVAEGPNVNVAFITHDKELVLPFFD 277
+ VNY NV N
Sbjct: 1839 WLVEI--VNY--NV--------------------------ENQQY--------------- 1853
Query: 278 KILSGCTAKRLLELAPKLVEQGRLKSVKTANLTV----DEAKGAAEMMY 322
+ +G R L+ ++ +L+ + L +E + ++
Sbjct: 1854 -VAAG--DLRALDTVTNVLNFIKLQKIDIIELQKSLSLEEVE---GHLF 1896
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 44.1 bits (103), Expect = 7e-05
Identities = 52/272 (19%), Positives = 88/272 (32%), Gaps = 50/272 (18%)
Query: 104 HRGHGVFDTAIILNGYLYELDVHLDRFLRSAVSARISSPFPRSTLRS-----ILVQLTAA 158
H H F+T Y L V D F+ + + P+S L I++ A
Sbjct: 3 HHHHMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQD-MPKSILSKEEIDHIIMSKDAV 61
Query: 159 SQCKKGTLR-FWLTAGPGDFLLSPAGCPTSAFYAVVIDDDFS--------QCKEGVKVIT 209
S TLR FW LLS F V+ ++ + ++ +
Sbjct: 62 SG----TLRLFWT-------LLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTR 110
Query: 210 SSIPMKPRLFATVK-----NVNYLPNVLAKMEA--EDKGASASIWIDEDGYVAEGPNVNV 262
I + RL+ + NV+ L L +A E + A + DG + G
Sbjct: 111 MYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAK---NVLIDGVLGSGKTWVA 167
Query: 263 AFITHDKELVLPFFDKI----LSGC-TAKRLLELAPKLVEQ------GRLKSVKTANLTV 311
+ ++ KI L C + + +LE+ KL+ Q R L +
Sbjct: 168 LDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRI 227
Query: 312 DEAKGAAEMMYVGSTLP--LLAI-TVWDEQPI 340
+ + LL + V + +
Sbjct: 228 HSIQAELRRLLKSKPYENCLLVLLNVQNAKAW 259
Score = 40.6 bits (94), Expect = 9e-04
Identities = 56/381 (14%), Positives = 105/381 (27%), Gaps = 111/381 (29%)
Query: 19 VLRFCLVIYCLCLKFCVSCLFSVEAENGSEFKAHMFSSSSELLQK----LQEKWSSVKKK 74
V + + L K E + F E+L+ L + +++
Sbjct: 61 VSGTLRLFWTLLSK----------QEEMVQ----KFVE--EVLRINYKFLMSPIKTEQRQ 104
Query: 75 PYP--AMYSSIFGGIILDPAMMVIPIDDHMVHRGHGVFDTAIILNGYLYELDVHLDRFL- 131
P MY + D + V R L L EL + +
Sbjct: 105 PSMMTRMYIEQRDRLYNDNQ----VFAKYNVSRLQPYLK----LRQALLELRPAKNVLID 156
Query: 132 ------RSAVSARISSPFPRSTLRSILVQLTAASQCKKGTLRFWLTAG----PGDFLLSP 181
++ V+ S VQ CK FWL P L
Sbjct: 157 GVLGSGKTWVAL--------DVCLSYKVQ------CKMDFKIFWLNLKNCNSPETVLE-- 200
Query: 182 AGCPTSAFYAVVIDDDFSQCKEGVKVITSSIPMKPRLFATVKNVNYLPNVLAKMEAEDKG 241
+ + S+ + ++ L +K+ Y N L + +
Sbjct: 201 ---MLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPY-ENCLLVL--LN-- 252
Query: 242 ASASIWIDEDGYVAEGPNVN--VAFITHDKELVLPFFDKILSGCTAKRLLELAPKLVEQG 299
+ + N++ + T K++ D + + T L+ +
Sbjct: 253 ----VQ---NAKAWNAFNLSCKILLTTRFKQVT----DFLSAATTTHISLDHHSMTLTPD 301
Query: 300 RLKSV--KTANLTVDEAKGAAEMMYVGSTLPLLAITVWDEQPIGDGNVGELTMALSDLLW 357
+KS+ K + + LP +T P LS ++
Sbjct: 302 EVKSLLLKYLDCRPQD-------------LPREVLTT---NP----------RRLS-IIA 334
Query: 358 E---DMVAGPETQRHCVSYDQ 375
E D +A + +H V+ D+
Sbjct: 335 ESIRDGLATWDNWKH-VNCDK 354
>1juh_A Quercetin 2,3-dioxygenase; cupin, glycoprotein, beta sandwich,
oxidoreduct; HET: NAG BMA MAN; 1.60A {Aspergillus
japonicus} SCOP: b.82.1.5 PDB: 1gqh_A* 1h1i_A* 1h1m_A*
1gqg_A*
Length = 350
Score = 35.2 bits (80), Expect = 0.026
Identities = 30/241 (12%), Positives = 62/241 (25%), Gaps = 44/241 (18%)
Query: 163 KGTLRFWL----------TAGPGDFLLSPAGCP--------TSAFYAVVIDDDFSQCKEG 204
KG+ + W GD+ P + V++ F
Sbjct: 79 KGSFQLWAQSGNETQQTRVLSSGDYGSVPRNVTHTFQIQDPDTEMTGVIVPGGFEDLFYY 138
Query: 205 VKVITSS---IPMKPRLFATVKNVNYLPNVLAKMEAEDKGASASIWIDEDGYVAEGPNVN 261
+ + P P + + ++ +++ D A S D P
Sbjct: 139 LGTNATDTTHTPYIPSSSDSSSTTGPDSSTISTLQSFDVYAELSFTPRTDTVNGTAPANT 198
Query: 262 VAFITHDKEL---VLPFFDKILSGCTAKRLLELAPKLVEQGRLKSVKTANLTVDEAKGAA 318
V + P+F G PK + + +T +A+
Sbjct: 199 VWHTGANALASTAGDPYFIANGWG----------PKYLNSQYGYQIVAPFVTATQAQDTN 248
Query: 319 -EMMYVGSTLPLLAITVWDEQPIGDGNV----GELTMALSDLLWEDMVAG-----PETQR 368
+ + + +TV G G + + + D ++ +G P
Sbjct: 249 YTLSTISMSTTPSTVTVPTWSFPGACAFQVQEGRVVVQIGDYAATELGSGDVAFIPGGVE 308
Query: 369 H 369
Sbjct: 309 F 309
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.1 bits (69), Expect = 0.30
Identities = 13/51 (25%), Positives = 18/51 (35%), Gaps = 25/51 (49%)
Query: 286 KRLLELAPKLVEQGRLKSVKTANLTVDEAKGAAEMMYVGSTLPLLAI--TV 334
K+ L+ KL Q LK +Y + P LAI T+
Sbjct: 19 KQALK---KL--QASLK------------------LYADDSAPALAIKATM 46
Score = 29.1 bits (64), Expect = 1.5
Identities = 8/41 (19%), Positives = 17/41 (41%), Gaps = 18/41 (43%)
Query: 202 KEGVKVITSSIPMKPRLFATVKNVNYLPN------VLAKME 236
K+ +K + +S+ +L+A + + A ME
Sbjct: 19 KQALKKLQASL----KLYA--------DDSAPALAIKATME 47
>1yew_A Particulate methane monooxygenase, B subunit; membrane protein,
beta barrel, oxidoreductase; 2.80A {Methylococcus
capsulatus} PDB: 3rgb_A
Length = 382
Score = 30.8 bits (69), Expect = 0.71
Identities = 15/60 (25%), Positives = 23/60 (38%), Gaps = 1/60 (1%)
Query: 300 RLKSVKTANLT-VDEAKGAAEMMYVGSTLPLLAITVWDEQPIGDGNVGELTMALSDLLWE 358
RL TA++ +D Y L ++V D P+ G + + SD WE
Sbjct: 281 RLGEFYTASVRFLDSDVYKDTTGYPEDLLAEDGLSVSDNSPLAPGETRTVDVTASDAAWE 340
>1y3t_A Hypothetical protein YXAG; BI cupin, dioxygenase, oxidoreductase;
2.40A {Bacillus subtilis} SCOP: b.82.1.5 PDB: 2h0v_A*
Length = 337
Score = 30.1 bits (67), Expect = 1.2
Identities = 9/30 (30%), Positives = 10/30 (33%), Gaps = 5/30 (16%)
Query: 161 CKKGTLRFWL-----TAGPGDFLLSPAGCP 185
G L L GD+ PAG P
Sbjct: 73 VLDGKLELTLDGERYLLISGDYANIPAGTP 102
Score = 29.4 bits (65), Expect = 2.0
Identities = 10/30 (33%), Positives = 12/30 (40%), Gaps = 5/30 (16%)
Query: 163 KGTLRFWL-----TAGPGDFLLSPAGCPTS 187
+G + W PGDFL PA S
Sbjct: 247 EGQMTMWTDGQEIQLNPGDFLHVPANTVHS 276
>1t1u_A Choline O-acetyltransferase; choline acetyltransferase; 1.55A
{Rattus norvegicus} SCOP: c.43.1.3 c.43.1.3 PDB: 1q6x_A
2fy2_A 2fy3_A 2fy4_A* 2fy5_A*
Length = 639
Score = 29.4 bits (65), Expect = 2.4
Identities = 10/48 (20%), Positives = 20/48 (41%)
Query: 30 CLKFCVSCLFSVEAENGSEFKAHMFSSSSELLQKLQEKWSSVKKKPYP 77
+ FC+S S + + EF + +S ++ + + K P P
Sbjct: 579 AITFCISSFHSCKETSSVEFAEAVGASLVDMRDLCSSRQPADSKPPAP 626
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette,
hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Length = 279
Score = 28.7 bits (65), Expect = 3.0
Identities = 13/53 (24%), Positives = 26/53 (49%), Gaps = 8/53 (15%)
Query: 255 AEGPNVNVAFITHDKELVLPFFDKILSGCTAKRLLELAPKLVEQGRLKSVKTA 307
P + + ++TH E + F KIL LL+ + ++QG ++ + T+
Sbjct: 209 DSYPTLAMIYVTHFIEEITANFSKIL-------LLK-DGQSIQQGAVEDILTS 253
>1sef_A Conserved hypothetical protein; structural genomics, nysgxrc target
T1582, PSI, protein STRU initiative; 2.05A {Enterococcus
faecalis} SCOP: b.82.1.11
Length = 274
Score = 28.5 bits (63), Expect = 3.5
Identities = 9/31 (29%), Positives = 13/31 (41%), Gaps = 1/31 (3%)
Query: 169 WLTAGPGDFLLSPAGCPTSAFYAVVIDDDFS 199
W GD++ A P A YAV ++
Sbjct: 222 WYPVEKGDYIFMSAYVP-QAAYAVGREEPLM 251
>4e2q_A Ureidoglycine aminohydrolase; BI-cupin, manganese binding,
endoplasmic RET hydrolase; 2.50A {Arabidopsis thaliana}
PDB: 4e2s_A
Length = 266
Score = 28.0 bits (62), Expect = 4.5
Identities = 5/24 (20%), Positives = 8/24 (33%), Gaps = 1/24 (4%)
Query: 169 WLTAGPGDFLLSPAGCPTSAFYAV 192
W GD + P + A+
Sbjct: 226 WYPVQAGDVIWMAPFVP-QWYAAL 248
>2ppq_A HSK, HK, homoserine kinase; structural genomics, MCSG, PSI-2,
protein structure initiative; 2.00A {Agrobacterium
tumefaciens str} SCOP: d.144.1.6
Length = 322
Score = 28.0 bits (61), Expect = 5.0
Identities = 29/164 (17%), Positives = 51/164 (31%), Gaps = 10/164 (6%)
Query: 22 FCLVIYCLCLKFCVSCLFSVEAENGSEFKAHMFSSSSELLQKLQEKWSSVKKKPYPAMYS 81
F + L+ E E + + + L W
Sbjct: 135 FEIKRPNALSVDGWKVLWDKSEERADEVEKGLREEIRPEIDYLAAHWPKDLPA-GVIHAD 193
Query: 82 SIFGGIILDPAMMVIPIDDHMVHRGHGVFDTAIILNGYLYELDVHLDRFLRSAVSARISS 141
+ + ID + +D +I LN + +E D + A+ S
Sbjct: 194 LFQDNVFFLGDELSGLIDFYFACNDLLAYDVSICLNAWCFEKDGAYNVTKGKALLEGYQS 253
Query: 142 PFPRS--TLRSILVQLTAASQCKKGTLRFWLTAGPGDFLLSPAG 183
P S L ++ + ++ LRF+LT D+L +PAG
Sbjct: 254 VRPLSEAELEALPLLSRGSA------LRFFLTR-LYDWLTTPAG 290
>1rc6_A Hypothetical protein YLBA; structural genomics, NYSGXRC, SGX clone
NAME 3174C1TCT3B1, T T1521, PSI, protein initiative;
2.60A {Escherichia coli} SCOP: b.82.1.11
Length = 261
Score = 28.1 bits (62), Expect = 5.1
Identities = 9/31 (29%), Positives = 13/31 (41%), Gaps = 1/31 (3%)
Query: 169 WLTAGPGDFLLSPAGCPTSAFYAVVIDDDFS 199
W+ GD++ A A Y V + FS
Sbjct: 219 WIPVKKGDYIFMGAYSL-QAGYGVGRGEAFS 248
>2cjt_A UNC-13 homolog A, MUNC13-1; phorbol-ester binding, neurotransmitter
release, RIM, MUNC13 domains, exocytosis, metal-binding;
1.44A {Rattus norvegicus} SCOP: b.7.1.1
Length = 131
Score = 27.3 bits (60), Expect = 5.1
Identities = 9/36 (25%), Positives = 16/36 (44%)
Query: 330 LAITVWDEQPIGDGNVGELTMALSDLLWEDMVAGPE 365
L + VW++ I D VG + + L + + E
Sbjct: 63 LTVEVWNKGLIWDTMVGTVWIPLRTIRQSNEEGPGE 98
>1sfn_A Conserved hypothetical protein; structural genomics, nysgxrc target
T1583, PSI, protein STRU initiative; 2.46A {Deinococcus
radiodurans} SCOP: b.82.1.11
Length = 246
Score = 27.3 bits (60), Expect = 7.9
Identities = 6/24 (25%), Positives = 10/24 (41%), Gaps = 1/24 (4%)
Query: 169 WLTAGPGDFLLSPAGCPTSAFYAV 192
+ GD + A CP + A+
Sbjct: 205 YYPVTAGDIIWMGAHCP-QWYGAL 227
>1v70_A Probable antibiotics synthesis protein; structural genomics,
thermus thermophilus HB8, riken structu
genomics/proteomics initiative, RSGI; 1.30A {Thermus
thermophilus} SCOP: b.82.1.9 PDB: 2dct_A
Length = 105
Score = 26.3 bits (58), Expect = 8.0
Identities = 7/28 (25%), Positives = 11/28 (39%), Gaps = 5/28 (17%)
Query: 163 KGTLRFWL-----TAGPGDFLLSPAGCP 185
+G + + PG +PAG P
Sbjct: 57 EGEVVVRVGEEEALLAPGMAAFAPAGAP 84
>3rfr_A PMOB; membrane, oxidoreductase; 2.68A {Methylocystis SP} PDB:
3chx_A
Length = 419
Score = 27.4 bits (60), Expect = 8.1
Identities = 10/60 (16%), Positives = 22/60 (36%), Gaps = 3/60 (5%)
Query: 300 RLKSVKTANLT-VDEAKGAAEMMYVGSTLPLLAITVWDEQPIGDGNVGELTMALSDLLWE 358
RL A L ++ + + L ++ ++ I G E+ + + D W+
Sbjct: 315 RLGEYTAAGLRFLNPTVFTQKPDFPDYLLADRGLS--NDDVIAPGESKEIVVKIQDARWD 372
>1sq4_A GLXB, glyoxylate-induced protein; structural genomics, double beta
barrel protein, PSI, protei structure initiative; 2.70A
{Pseudomonas aeruginosa} SCOP: b.82.1.11
Length = 278
Score = 27.4 bits (60), Expect = 8.3
Identities = 9/24 (37%), Positives = 12/24 (50%), Gaps = 1/24 (4%)
Query: 169 WLTAGPGDFLLSPAGCPTSAFYAV 192
W+ GDF+ A CP A Y+
Sbjct: 231 WVEVEAGDFMWLRAFCP-QACYSG 253
>1xl7_A COT, peroxisomal carnitine O-octanoyltransferase; selenomethionine,
hepes; HET: EPE; 2.00A {Mus musculus} SCOP: c.43.1.3
c.43.1.3 PDB: 1xl8_A* 1xmd_A* 1xmc_A*
Length = 612
Score = 27.5 bits (60), Expect = 9.8
Identities = 7/64 (10%), Positives = 17/64 (26%), Gaps = 2/64 (3%)
Query: 3 TKSGNFPFFPVKVTVHVLRFCLVIYCLCLKFCVSCLFSVEAENGSEFKAHMFSSSSELLQ 62
P+ + F I S S + + +F + +++Q
Sbjct: 548 YLRVQGVVVPM--VHNGYGFFYHIRDDRFVVACSSWRSCPETDAEKLVQMIFHAFHDMIQ 605
Query: 63 KLQE 66
+
Sbjct: 606 LMNT 609
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.137 0.414
Gapped
Lambda K H
0.267 0.0564 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,751,829
Number of extensions: 348903
Number of successful extensions: 753
Number of sequences better than 10.0: 1
Number of HSP's gapped: 710
Number of HSP's successfully gapped: 43
Length of query: 375
Length of database: 6,701,793
Length adjustment: 95
Effective length of query: 280
Effective length of database: 4,049,298
Effective search space: 1133803440
Effective search space used: 1133803440
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.5 bits)