BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017247
(375 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3G33|B Chain B, Crystal Structure Of Cdk4CYCLIN D3
pdb|3G33|D Chain D, Crystal Structure Of Cdk4CYCLIN D3
Length = 306
Score = 58.2 bits (139), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 43/150 (28%), Positives = 68/150 (45%), Gaps = 4/150 (2%)
Query: 98 WVLKVNAHYGFSTLTAILAINYLDRFLRSFHFQIDKPWMIQLLAVTCLSLAAKVEETQVP 157
W+L+V LA+NYLDR+L + +QLL C+ LA+K+ ET P
Sbjct: 77 WMLEVCEEQRCEEEVFPLAMNYLDRYLSCVP---TRKAQLQLLGAVCMLLASKLRET-TP 132
Query: 158 LLLDLQVEGAKYVFETKAIQRMELLVLSTLEWKMHPVTPISFLDHIIRRLGLKTSLHWEF 217
L ++ + + ++ E+LVL L+W + V FL I+ RL L
Sbjct: 133 LTIEKLCIYTDHAVSPRQLRDWEVLVLGKLKWDLAAVIAHDFLAFILHRLSLPRDRQALV 192
Query: 218 LKRCERLLLTLVSDSRSVSYLPSVLATATM 247
K + L +D Y PS++AT ++
Sbjct: 193 KKHAQTFLALCATDYTFAMYPPSMIATGSI 222
>pdb|1VYW|B Chain B, Structure Of Cdk2CYCLIN A WITH PNU-292137
pdb|1VYW|D Chain D, Structure Of Cdk2CYCLIN A WITH PNU-292137
pdb|2C4G|B Chain B, Structure Of Cdk2-Cyclin A With Pha-533514
pdb|2C4G|D Chain D, Structure Of Cdk2-Cyclin A With Pha-533514
pdb|2BPM|B Chain B, Structure Of Cdk2-Cyclin A With Pha-630529
pdb|2BPM|D Chain D, Structure Of Cdk2-Cyclin A With Pha-630529
pdb|2BKZ|B Chain B, Structure Of Cdk2-Cyclin A With Pha-404611
pdb|2BKZ|D Chain D, Structure Of Cdk2-Cyclin A With Pha-404611
pdb|2WIH|B Chain B, Structure Of Cdk2-Cyclin A With Pha-848125
pdb|2WIH|D Chain D, Structure Of Cdk2-Cyclin A With Pha-848125
pdb|2WIP|B Chain B, Structure Of Cdk2-Cyclin A Complexed With 8-Anilino-1-
Methyl-4,5-Dihydro-1h-Pyrazolo[4,3-H] Quinazoline-3-
Carboxylic Acid
pdb|2WIP|D Chain D, Structure Of Cdk2-Cyclin A Complexed With 8-Anilino-1-
Methyl-4,5-Dihydro-1h-Pyrazolo[4,3-H] Quinazoline-3-
Carboxylic Acid
pdb|2WPA|B Chain B, Optimisation Of 6,6-Dimethyl Pyrrolo 3,4-C Pyrazoles:
Identification Of Pha-793887, A Potent Cdk Inhibitor
Suitable For Intravenous Dosing
pdb|2WPA|D Chain D, Optimisation Of 6,6-Dimethyl Pyrrolo 3,4-C Pyrazoles:
Identification Of Pha-793887, A Potent Cdk Inhibitor
Suitable For Intravenous Dosing
pdb|2WXV|B Chain B, Structure Of Cdk2-Cyclin A With A Pyrazolo(4,3-H)
Quinazoline-3-Carboxamide Inhibitor
pdb|2WXV|D Chain D, Structure Of Cdk2-Cyclin A With A Pyrazolo(4,3-H)
Quinazoline-3-Carboxamide Inhibitor
Length = 265
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 53/172 (30%), Positives = 76/172 (44%), Gaps = 24/172 (13%)
Query: 83 KDSDVLVVARSEAVEWVLKVNAHYGFSTLTAILAINYLDRFLRSFHFQIDKPWMIQLLAV 142
K D+ R+ V+W+++V Y T LA+NY+DRFL S K +QL+
Sbjct: 35 KQPDITNSMRAILVDWLVEVGEEYKLQNETLHLAVNYIDRFLSSMSVLRGK---LQLVGT 91
Query: 143 TCLSLAAKVEETQVPLLLDLQVEGAKYVFET------KAIQRMELLVLSTLEWKMHPVTP 196
+ LA+K EE P E A++V+ T K + RME LVL L + + T
Sbjct: 92 AAMLLASKFEEIYPP-------EVAEFVYITDDTYTKKQVLRMEHLVLKVLTFDLAAPTV 144
Query: 197 ISFLDHII---RRLGLKTSLHWEFLKRCERLLLTLVSDSRSVSYLPSVLATA 245
FL + K FL L+L+ + YLPSV+A A
Sbjct: 145 NQFLTQYFLHQQPANCKVESLAMFLGE-----LSLIDADPYLKYLPSVIAGA 191
>pdb|4BCO|B Chain B, Structure Of Cdk2 In Complex With Cyclin A And A
2-amino-4- Heteroaryl-pyrimidine Inhibitor
pdb|4BCO|D Chain D, Structure Of Cdk2 In Complex With Cyclin A And A
2-amino-4- Heteroaryl-pyrimidine Inhibitor
Length = 262
Score = 55.5 bits (132), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 53/172 (30%), Positives = 76/172 (44%), Gaps = 24/172 (13%)
Query: 83 KDSDVLVVARSEAVEWVLKVNAHYGFSTLTAILAINYLDRFLRSFHFQIDKPWMIQLLAV 142
K D+ R+ V+W+++V Y T LA+NY+DRFL S K +QL+
Sbjct: 32 KQPDITNSMRAILVDWLVEVGEEYKLQNETLHLAVNYIDRFLSSMSVLRGK---LQLVGT 88
Query: 143 TCLSLAAKVEETQVPLLLDLQVEGAKYVFET------KAIQRMELLVLSTLEWKMHPVTP 196
+ LA+K EE P E A++V+ T K + RME LVL L + + T
Sbjct: 89 AAMLLASKFEEIYPP-------EVAEFVYITDDTYTKKQVLRMEHLVLKVLTFDLAAPTV 141
Query: 197 ISFLDHII---RRLGLKTSLHWEFLKRCERLLLTLVSDSRSVSYLPSVLATA 245
FL + K FL L+L+ + YLPSV+A A
Sbjct: 142 NQFLTQYFLHQQPANCKVESLAMFLGE-----LSLIDADPYLKYLPSVIAAA 188
>pdb|4BCQ|B Chain B, Structure Of Cdk2 In Complex With Cyclin A And A
2-amino-4- Heteroaryl-pyrimidine Inhibitor
Length = 262
Score = 55.5 bits (132), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 53/172 (30%), Positives = 76/172 (44%), Gaps = 24/172 (13%)
Query: 83 KDSDVLVVARSEAVEWVLKVNAHYGFSTLTAILAINYLDRFLRSFHFQIDKPWMIQLLAV 142
K D+ R+ V+W+++V Y T LA+NY+DRFL S K +QL+
Sbjct: 32 KQPDITNSMRAILVDWLVEVGEEYKLQNETLHLAVNYIDRFLSSMSVLRGK---LQLVGT 88
Query: 143 TCLSLAAKVEETQVPLLLDLQVEGAKYVFET------KAIQRMELLVLSTLEWKMHPVTP 196
+ LA+K EE P E A++V+ T K + RME LVL L + + T
Sbjct: 89 AAMLLASKFEEIYPP-------EVAEFVYITDDTYTKKQVLRMEHLVLKVLTFDLAAPTV 141
Query: 197 ISFLDHII---RRLGLKTSLHWEFLKRCERLLLTLVSDSRSVSYLPSVLATA 245
FL + K FL L+L+ + YLPSV+A A
Sbjct: 142 NQFLTQYFLHQQPANCKVESLAMFLGE-----LSLIDADPYLKYLPSVIAAA 188
>pdb|1FIN|B Chain B, Cyclin A-Cyclin-Dependent Kinase 2 Complex
pdb|1FIN|D Chain D, Cyclin A-Cyclin-Dependent Kinase 2 Complex
pdb|1JSU|B Chain B, P27(Kip1)CYCLIN ACDK2 COMPLEX
pdb|1FVV|B Chain B, The Structure Of Cdk2CYCLIN A IN COMPLEX WITH AN OXINDOLE
Inhibitor
pdb|1FVV|D Chain D, The Structure Of Cdk2CYCLIN A IN COMPLEX WITH AN OXINDOLE
Inhibitor
pdb|1OKV|B Chain B, Cyclin A Binding Groove Inhibitor
H-Arg-Arg-Leu-Ile-Phe-Nh2
pdb|1OKV|D Chain D, Cyclin A Binding Groove Inhibitor
H-Arg-Arg-Leu-Ile-Phe-Nh2
pdb|1OKW|B Chain B, Cyclin A Binding Groove Inhibitor
Ac-Arg-Arg-Leu-Asn-(M-Cl-Phe)-Nh2
pdb|1OKW|D Chain D, Cyclin A Binding Groove Inhibitor
Ac-Arg-Arg-Leu-Asn-(M-Cl-Phe)-Nh2
pdb|1OL1|B Chain B, Cyclin A Binding Groove Inhibitor
H-Cit-Cit-Leu-Ile-(P-F-Phe)-Nh2
pdb|1OL1|D Chain D, Cyclin A Binding Groove Inhibitor
H-Cit-Cit-Leu-Ile-(P-F-Phe)-Nh2
pdb|1OL2|B Chain B, Cyclin A Binding Groove Inhibitor
H-Arg-Arg-Leu-Asn-(P-F-Phe)-Nh2
pdb|1OL2|D Chain D, Cyclin A Binding Groove Inhibitor
H-Arg-Arg-Leu-Asn-(P-F-Phe)-Nh2
pdb|1URC|B Chain B, Cyclin A Binding Groove Inhibitor Ace-Arg-Lys-Leu- Phe-Gly
pdb|1URC|D Chain D, Cyclin A Binding Groove Inhibitor Ace-Arg-Lys-Leu- Phe-Gly
pdb|2C5O|B Chain B, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2C5O|D Chain D, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2CCH|B Chain B, The Crystal Structure Of Cdk2 Cyclin A In Complex With A
Substrate Peptide Derived From Cdc Modified With A
Gamma- Linked Atp Analogue
pdb|2CCH|D Chain D, The Crystal Structure Of Cdk2 Cyclin A In Complex With A
Substrate Peptide Derived From Cdc Modified With A
Gamma- Linked Atp Analogue
pdb|2I40|B Chain B, Cdk2CYCLIN A COMPLEXED WITH A THIOPHENE CARBOXAMIDE
INHIBITOR
pdb|2I40|D Chain D, Cdk2CYCLIN A COMPLEXED WITH A THIOPHENE CARBOXAMIDE
INHIBITOR
pdb|3EID|B Chain B, Cdk2CYCLINA COMPLEXED WITH A PYRAZOLOPYRIDAZINE INHIBITOR
pdb|3EID|D Chain D, Cdk2CYCLINA COMPLEXED WITH A PYRAZOLOPYRIDAZINE INHIBITOR
pdb|3EJ1|B Chain B, Cdk2CYCLINA COMPLEXED WITH A PYRAZOLOPYRIDAZINE INHIBITOR
pdb|3EJ1|D Chain D, Cdk2CYCLINA COMPLEXED WITH A PYRAZOLOPYRIDAZINE INHIBITOR
pdb|3EOC|B Chain B, Cdk2/cyclina Complexed With A Imidazo Triazin-2-amine
pdb|3EOC|D Chain D, Cdk2/cyclina Complexed With A Imidazo Triazin-2-amine
pdb|2WEV|B Chain B, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|2WEV|D Chain D, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|2WFY|B Chain B, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|2WFY|D Chain D, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|2WHB|B Chain B, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|2WHB|D Chain D, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
Length = 260
Score = 55.1 bits (131), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 53/172 (30%), Positives = 76/172 (44%), Gaps = 24/172 (13%)
Query: 83 KDSDVLVVARSEAVEWVLKVNAHYGFSTLTAILAINYLDRFLRSFHFQIDKPWMIQLLAV 142
K D+ R+ V+W+++V Y T LA+NY+DRFL S K +QL+
Sbjct: 30 KQPDITNSMRAILVDWLVEVGEEYKLQNETLHLAVNYIDRFLSSMSVLRGK---LQLVGT 86
Query: 143 TCLSLAAKVEETQVPLLLDLQVEGAKYVFET------KAIQRMELLVLSTLEWKMHPVTP 196
+ LA+K EE P E A++V+ T K + RME LVL L + + T
Sbjct: 87 AAMLLASKFEEIYPP-------EVAEFVYITDDTYTKKQVLRMEHLVLKVLTFDLAAPTV 139
Query: 197 ISFLDHII---RRLGLKTSLHWEFLKRCERLLLTLVSDSRSVSYLPSVLATA 245
FL + K FL L+L+ + YLPSV+A A
Sbjct: 140 NQFLTQYFLHQQPANCKVESLAMFLGE-----LSLIDADPYLKYLPSVIAGA 186
>pdb|4BCQ|D Chain D, Structure Of Cdk2 In Complex With Cyclin A And A
2-amino-4- Heteroaryl-pyrimidine Inhibitor
Length = 262
Score = 55.1 bits (131), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 53/172 (30%), Positives = 76/172 (44%), Gaps = 24/172 (13%)
Query: 83 KDSDVLVVARSEAVEWVLKVNAHYGFSTLTAILAINYLDRFLRSFHFQIDKPWMIQLLAV 142
K D+ R+ V+W+++V Y T LA+NY+DRFL S K +QL+
Sbjct: 32 KQPDITNSMRAILVDWLVEVGEEYKLQNETLHLAVNYIDRFLSSMSVLRGK---LQLVGT 88
Query: 143 TCLSLAAKVEETQVPLLLDLQVEGAKYVFET------KAIQRMELLVLSTLEWKMHPVTP 196
+ LA+K EE P E A++V+ T K + RME LVL L + + T
Sbjct: 89 AAMLLASKFEEIYPP-------EVAEFVYITDDTYTKKQVLRMEHLVLKVLTFDLAAPTV 141
Query: 197 ISFLDHII---RRLGLKTSLHWEFLKRCERLLLTLVSDSRSVSYLPSVLATA 245
FL + K FL L+L+ + YLPSV+A A
Sbjct: 142 NQFLTQYFLHQQPANCKVESLAMFLGE-----LSLIDADPYLKYLPSVIAAA 188
>pdb|3DDQ|B Chain B, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
With The Inhibitor Roscovitine
pdb|3DDQ|D Chain D, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
With The Inhibitor Roscovitine
Length = 269
Score = 55.1 bits (131), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 53/172 (30%), Positives = 76/172 (44%), Gaps = 24/172 (13%)
Query: 83 KDSDVLVVARSEAVEWVLKVNAHYGFSTLTAILAINYLDRFLRSFHFQIDKPWMIQLLAV 142
K D+ R+ V+W+++V Y T LA+NY+DRFL S K +QL+
Sbjct: 32 KQPDITNSMRAILVDWLVEVGEEYKLQNETLHLAVNYIDRFLSSMSVLRGK---LQLVGT 88
Query: 143 TCLSLAAKVEETQVPLLLDLQVEGAKYVFET------KAIQRMELLVLSTLEWKMHPVTP 196
+ LA+K EE P E A++V+ T K + RME LVL L + + T
Sbjct: 89 AAMLLASKFEEIYPP-------EVAEFVYITDDTYTKKQVLRMEHLVLKVLAFDLAAPTI 141
Query: 197 ISFLDHII---RRLGLKTSLHWEFLKRCERLLLTLVSDSRSVSYLPSVLATA 245
FL + K FL L+L+ + YLPSV+A A
Sbjct: 142 NQFLTQYFLHQQPANCKVESLAMFLGE-----LSLIDADPYLKYLPSVIAAA 188
>pdb|3DDP|B Chain B, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
With The Inhibitor Cr8
pdb|3DDP|D Chain D, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
With The Inhibitor Cr8
Length = 268
Score = 55.1 bits (131), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 53/172 (30%), Positives = 76/172 (44%), Gaps = 24/172 (13%)
Query: 83 KDSDVLVVARSEAVEWVLKVNAHYGFSTLTAILAINYLDRFLRSFHFQIDKPWMIQLLAV 142
K D+ R+ V+W+++V Y T LA+NY+DRFL S K +QL+
Sbjct: 32 KQPDITNSMRAILVDWLVEVGEEYKLQNETLHLAVNYIDRFLSSMSVLRGK---LQLVGT 88
Query: 143 TCLSLAAKVEETQVPLLLDLQVEGAKYVFET------KAIQRMELLVLSTLEWKMHPVTP 196
+ LA+K EE P E A++V+ T K + RME LVL L + + T
Sbjct: 89 AAMLLASKFEEIYPP-------EVAEFVYITDDTYTKKQVLRMEHLVLKVLAFDLAAPTI 141
Query: 197 ISFLDHII---RRLGLKTSLHWEFLKRCERLLLTLVSDSRSVSYLPSVLATA 245
FL + K FL L+L+ + YLPSV+A A
Sbjct: 142 NQFLTQYFLHQQPANCKVESLAMFLGE-----LSLIDADPYLKYLPSVIAAA 188
>pdb|3BHT|B Chain B, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
WITH THE Inhibitor Meriolin 3
pdb|3BHT|D Chain D, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
WITH THE Inhibitor Meriolin 3
pdb|3BHU|B Chain B, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
WITH THE Inhibitor Meriolin 5
pdb|3BHU|D Chain D, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
WITH THE Inhibitor Meriolin 5
pdb|3BHV|B Chain B, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
With The Inhibitor Variolin B
pdb|3BHV|D Chain D, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
With The Inhibitor Variolin B
pdb|3MY5|B Chain B, Cdk2CYCLINA IN COMPLEX WITH DRB
pdb|3MY5|D Chain D, Cdk2CYCLINA IN COMPLEX WITH DRB
pdb|3TNW|B Chain B, Structure Of Cdk2CYCLIN A IN COMPLEX WITH CAN508
pdb|3TNW|D Chain D, Structure Of Cdk2CYCLIN A IN COMPLEX WITH CAN508
Length = 262
Score = 55.1 bits (131), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 53/172 (30%), Positives = 76/172 (44%), Gaps = 24/172 (13%)
Query: 83 KDSDVLVVARSEAVEWVLKVNAHYGFSTLTAILAINYLDRFLRSFHFQIDKPWMIQLLAV 142
K D+ R+ V+W+++V Y T LA+NY+DRFL S K +QL+
Sbjct: 32 KQPDITNSMRAILVDWLVEVGEEYKLQNETLHLAVNYIDRFLSSMSVLRGK---LQLVGT 88
Query: 143 TCLSLAAKVEETQVPLLLDLQVEGAKYVFET------KAIQRMELLVLSTLEWKMHPVTP 196
+ LA+K EE P E A++V+ T K + RME LVL L + + T
Sbjct: 89 AAMLLASKFEEIYPP-------EVAEFVYITDDTYTKKQVLRMEHLVLKVLAFDLAAPTI 141
Query: 197 ISFLDHII---RRLGLKTSLHWEFLKRCERLLLTLVSDSRSVSYLPSVLATA 245
FL + K FL L+L+ + YLPSV+A A
Sbjct: 142 NQFLTQYFLHQQPANCKVESLAMFLGE-----LSLIDADPYLKYLPSVIAAA 188
>pdb|1QMZ|B Chain B, Phosphorylated Cdk2-Cyclyin A-Substrate Peptide Complex
pdb|1QMZ|D Chain D, Phosphorylated Cdk2-Cyclyin A-Substrate Peptide Complex
pdb|1H24|B Chain B, Cdk2CYCLIN A IN COMPLEX WITH A 9 RESIDUE RECRUITMENT
Peptide From E2f
pdb|1H24|D Chain D, Cdk2CYCLIN A IN COMPLEX WITH A 9 RESIDUE RECRUITMENT
Peptide From E2f
pdb|1H25|B Chain B, Cdk2CYCLIN A IN COMPLEX WITH AN 11-Residue Recruitment
Peptide From Retinoblastoma-Associated Protein
pdb|1H25|D Chain D, Cdk2CYCLIN A IN COMPLEX WITH AN 11-Residue Recruitment
Peptide From Retinoblastoma-Associated Protein
pdb|1H26|B Chain B, Cdk2CYCLIN A IN COMPLEX WITH AN 11-Residue Recruitment
Peptide From P53
pdb|1H26|D Chain D, Cdk2CYCLIN A IN COMPLEX WITH AN 11-Residue Recruitment
Peptide From P53
pdb|1H27|B Chain B, Cdk2CYCLIN A IN COMPLEX WITH AN 11-Residue Recruitment
Peptide From P27
pdb|1H27|D Chain D, Cdk2CYCLIN A IN COMPLEX WITH AN 11-Residue Recruitment
Peptide From P27
pdb|1H28|B Chain B, Cdk2/cyclin A In Complex With An 11-residue Recruitment
Peptide From P107
pdb|1H28|D Chain D, Cdk2/cyclin A In Complex With An 11-residue Recruitment
Peptide From P107
pdb|2C5N|B Chain B, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2C5N|D Chain D, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2C5V|B Chain B, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2C5V|D Chain D, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2C5X|B Chain B, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2C5X|D Chain D, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2UUE|B Chain B, Replace: A Strategy For Iterative Design Of Cyclin Binding
Groove Inhibitors
pdb|2UUE|D Chain D, Replace: A Strategy For Iterative Design Of Cyclin Binding
Groove Inhibitors
pdb|2V22|B Chain B, Replace: A Strategy For Iterative Design Of Cyclin Binding
Groove Inhibitors
pdb|2V22|D Chain D, Replace: A Strategy For Iterative Design Of Cyclin Binding
Groove Inhibitors
pdb|2WMA|B Chain B, Structural And Thermodynamic Consequences Of Cyclization
Of Peptide Ligands For The Recruitment Site Of Cyclin A
pdb|2WMA|D Chain D, Structural And Thermodynamic Consequences Of Cyclization
Of Peptide Ligands For The Recruitment Site Of Cyclin A
pdb|2WMB|B Chain B, Structural And Thermodynamic Consequences Of Cyclization
Of Peptide Ligands For The Recruitment Site Of Cyclin A
pdb|2WMB|D Chain D, Structural And Thermodynamic Consequences Of Cyclization
Of Peptide Ligands For The Recruitment Site Of Cyclin A
Length = 259
Score = 55.1 bits (131), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 53/172 (30%), Positives = 76/172 (44%), Gaps = 24/172 (13%)
Query: 83 KDSDVLVVARSEAVEWVLKVNAHYGFSTLTAILAINYLDRFLRSFHFQIDKPWMIQLLAV 142
K D+ R+ V+W+++V Y T LA+NY+DRFL S K +QL+
Sbjct: 29 KQPDITNSMRAILVDWLVEVGEEYKLQNETLHLAVNYIDRFLSSMSVLRGK---LQLVGT 85
Query: 143 TCLSLAAKVEETQVPLLLDLQVEGAKYVFET------KAIQRMELLVLSTLEWKMHPVTP 196
+ LA+K EE P E A++V+ T K + RME LVL L + + T
Sbjct: 86 AAMLLASKFEEIYPP-------EVAEFVYITDDTYTKKQVLRMEHLVLKVLTFDLAAPTV 138
Query: 197 ISFLDHII---RRLGLKTSLHWEFLKRCERLLLTLVSDSRSVSYLPSVLATA 245
FL + K FL L+L+ + YLPSV+A A
Sbjct: 139 NQFLTQYFLHQQPANCKVESLAMFLGE-----LSLIDADPYLKYLPSVIAGA 185
>pdb|2G9X|B Chain B, Structure Of Thr 160 Phosphorylated Cdk2CYCLIN A IN
COMPLEX WITH THE Inhibitor Nu6271
pdb|2G9X|D Chain D, Structure Of Thr 160 Phosphorylated Cdk2CYCLIN A IN
COMPLEX WITH THE Inhibitor Nu6271
Length = 262
Score = 55.1 bits (131), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 53/172 (30%), Positives = 76/172 (44%), Gaps = 24/172 (13%)
Query: 83 KDSDVLVVARSEAVEWVLKVNAHYGFSTLTAILAINYLDRFLRSFHFQIDKPWMIQLLAV 142
K D+ R+ V+W+++V Y T LA+NY+DRFL S K +QL+
Sbjct: 32 KQPDITNSMRAILVDWLVEVGEEYKLQNETLHLAVNYIDRFLSSMSVLRGK---LQLVGT 88
Query: 143 TCLSLAAKVEETQVPLLLDLQVEGAKYVFET------KAIQRMELLVLSTLEWKMHPVTP 196
+ LA+K EE P E A++V+ T K + RME LVL L + + T
Sbjct: 89 AAMLLASKFEEIYPP-------EVAEFVYITDDTYTKKQVLRMEHLVLKVLAFDLAAPTI 141
Query: 197 ISFLDHII---RRLGLKTSLHWEFLKRCERLLLTLVSDSRSVSYLPSVLATA 245
FL + K FL L+L+ + YLPSV+A A
Sbjct: 142 NQFLTQYFLHQQPANCKVESLAMFLGE-----LSLIDADPYLKYLPSVIAAA 188
>pdb|1VIN|A Chain A, Bovine Cyclin A3
Length = 268
Score = 55.1 bits (131), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 53/172 (30%), Positives = 76/172 (44%), Gaps = 24/172 (13%)
Query: 83 KDSDVLVVARSEAVEWVLKVNAHYGFSTLTAILAINYLDRFLRSFHFQIDKPWMIQLLAV 142
K D+ R+ V+W+++V Y T LA+NY+DRFL S K +QL+
Sbjct: 32 KQPDITNSMRAILVDWLVEVGEEYKLQNETLHLAVNYIDRFLSSMSVLRGK---LQLVGT 88
Query: 143 TCLSLAAKVEETQVPLLLDLQVEGAKYVFET------KAIQRMELLVLSTLEWKMHPVTP 196
+ LA+K EE P E A++V+ T K + RME LVL L + + T
Sbjct: 89 AAMLLASKFEEIYPP-------EVAEFVYITDDTYTKKQVLRMEHLVLKVLAFDLAAPTI 141
Query: 197 ISFLDHII---RRLGLKTSLHWEFLKRCERLLLTLVSDSRSVSYLPSVLATA 245
FL + K FL L+L+ + YLPSV+A A
Sbjct: 142 NQFLTQYFLHQQPANCKVESLAMFLGE-----LSLIDADPYLKYLPSVIAAA 188
>pdb|2X1N|B Chain B, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|2X1N|D Chain D, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
Length = 261
Score = 55.1 bits (131), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 53/172 (30%), Positives = 76/172 (44%), Gaps = 24/172 (13%)
Query: 83 KDSDVLVVARSEAVEWVLKVNAHYGFSTLTAILAINYLDRFLRSFHFQIDKPWMIQLLAV 142
K D+ R+ V+W+++V Y T LA+NY+DRFL S K +QL+
Sbjct: 31 KQPDITNSMRAILVDWLVEVGEEYKLQNETLHLAVNYIDRFLSSMSVLRGK---LQLVGT 87
Query: 143 TCLSLAAKVEETQVPLLLDLQVEGAKYVFET------KAIQRMELLVLSTLEWKMHPVTP 196
+ LA+K EE P E A++V+ T K + RME LVL L + + T
Sbjct: 88 AAMLLASKFEEIYPP-------EVAEFVYITDDTYTKKQVLRMEHLVLKVLTFDLAAPTV 140
Query: 197 ISFLDHII---RRLGLKTSLHWEFLKRCERLLLTLVSDSRSVSYLPSVLATA 245
FL + K FL L+L+ + YLPSV+A A
Sbjct: 141 NQFLTQYFLHQQPANCKVESLAMFLGE-----LSLIDADPYLKYLPSVIAGA 187
>pdb|1OGU|B Chain B, Structure Of Human Thr160-phospho Cdk2/cyclin A Complexed
With A
2-arylamino-4-cyclohexylmethyl-5-nitroso-6-
aminopyrimidine Inhibitor
pdb|1OGU|D Chain D, Structure Of Human Thr160-phospho Cdk2/cyclin A Complexed
With A
2-arylamino-4-cyclohexylmethyl-5-nitroso-6-
aminopyrimidine Inhibitor
pdb|1OI9|B Chain B, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With A 6-Cyclohexylmethyloxy-2-Anilino-Purine Inhibitor
pdb|1OI9|D Chain D, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With A 6-Cyclohexylmethyloxy-2-Anilino-Purine Inhibitor
pdb|1OIU|B Chain B, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With A 6-Cyclohexylmethyloxy-2-Anilino-Purine Inhibitor
pdb|1OIU|D Chain D, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With A 6-Cyclohexylmethyloxy-2-Anilino-Purine Inhibitor
pdb|1OIY|B Chain B, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With A 6-Cyclohexylmethyloxy-2-Anilino-Purine Inhibitor
pdb|1OIY|D Chain D, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With A 6-Cyclohexylmethyloxy-2-Anilino-Purine Inhibitor
pdb|2IW6|B Chain B, Structure Of Human Thr160-Phospho Cdk2-Cyclin A Complexed
With A Bisanilinopyrimidine Inhibitor
pdb|2IW6|D Chain D, Structure Of Human Thr160-Phospho Cdk2-Cyclin A Complexed
With A Bisanilinopyrimidine Inhibitor
pdb|2IW8|B Chain B, Structure Of Human Thr160-Phospho Cdk2-Cyclin A F82h-L83v-
H84d Mutant With An O6-Cyclohexylmethylguanine Inhibitor
pdb|2IW8|D Chain D, Structure Of Human Thr160-Phospho Cdk2-Cyclin A F82h-L83v-
H84d Mutant With An O6-Cyclohexylmethylguanine Inhibitor
pdb|2IW9|B Chain B, Structure Of Human Thr160-Phospho Cdk2-Cyclin A Complexed
With A Bisanilinopyrimidine Inhibitor
pdb|2IW9|D Chain D, Structure Of Human Thr160-Phospho Cdk2-Cyclin A Complexed
With A Bisanilinopyrimidine Inhibitor
Length = 260
Score = 55.1 bits (131), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 53/172 (30%), Positives = 76/172 (44%), Gaps = 24/172 (13%)
Query: 83 KDSDVLVVARSEAVEWVLKVNAHYGFSTLTAILAINYLDRFLRSFHFQIDKPWMIQLLAV 142
K D+ R+ V+W+++V Y T LA+NY+DRFL S K +QL+
Sbjct: 30 KQPDITNSMRAILVDWLVEVGEEYKLQNETLHLAVNYIDRFLSSMSVLRGK---LQLVGT 86
Query: 143 TCLSLAAKVEETQVPLLLDLQVEGAKYVFET------KAIQRMELLVLSTLEWKMHPVTP 196
+ LA+K EE P E A++V+ T K + RME LVL L + + T
Sbjct: 87 AAMLLASKFEEIYPP-------EVAEFVYITDDTYTKKQVLRMEHLVLKVLTFDLAAPTV 139
Query: 197 ISFLDHII---RRLGLKTSLHWEFLKRCERLLLTLVSDSRSVSYLPSVLATA 245
FL + K FL L+L+ + YLPSV+A A
Sbjct: 140 NQFLTQYFLHQQPANCKVESLAMFLGE-----LSLIDADPYLKYLPSVIAGA 186
>pdb|1E9H|B Chain B, Thr 160 Phosphorylated Cdk2-Human Cyclin A3 Complex With
The Inhibitor Indirubin-5-Sulphonate Bound
pdb|1E9H|D Chain D, Thr 160 Phosphorylated Cdk2-Human Cyclin A3 Complex With
The Inhibitor Indirubin-5-Sulphonate Bound
Length = 261
Score = 55.1 bits (131), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 53/172 (30%), Positives = 76/172 (44%), Gaps = 24/172 (13%)
Query: 83 KDSDVLVVARSEAVEWVLKVNAHYGFSTLTAILAINYLDRFLRSFHFQIDKPWMIQLLAV 142
K D+ R+ V+W+++V Y T LA+NY+DRFL S K +QL+
Sbjct: 28 KQPDITNSMRAILVDWLVEVGEEYKLQNETLHLAVNYIDRFLSSMSVLRGK---LQLVGT 84
Query: 143 TCLSLAAKVEETQVPLLLDLQVEGAKYVFET------KAIQRMELLVLSTLEWKMHPVTP 196
+ LA+K EE P E A++V+ T K + RME LVL L + + T
Sbjct: 85 AAMLLASKFEEIYPP-------EVAEFVYITDDTYTKKQVLRMEHLVLKVLTFDLAAPTV 137
Query: 197 ISFLDHII---RRLGLKTSLHWEFLKRCERLLLTLVSDSRSVSYLPSVLATA 245
FL + K FL L+L+ + YLPSV+A A
Sbjct: 138 NQFLTQYFLHQQPANCKVESLAMFLGE-----LSLIDADPYLKYLPSVIAGA 184
>pdb|3DOG|B Chain B, Structure Of Thr 160 Phosphorylated Cdk2CYCLIN A IN
Complex With The Inhibitor N-&-N1
pdb|3DOG|D Chain D, Structure Of Thr 160 Phosphorylated Cdk2CYCLIN A IN
Complex With The Inhibitor N-&-N1
Length = 264
Score = 55.1 bits (131), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 53/172 (30%), Positives = 76/172 (44%), Gaps = 24/172 (13%)
Query: 83 KDSDVLVVARSEAVEWVLKVNAHYGFSTLTAILAINYLDRFLRSFHFQIDKPWMIQLLAV 142
K D+ R+ V+W+++V Y T LA+NY+DRFL S K +QL+
Sbjct: 32 KQPDITNSMRAILVDWLVEVGEEYKLQNETLHLAVNYIDRFLSSMSVLRGK---LQLVGT 88
Query: 143 TCLSLAAKVEETQVPLLLDLQVEGAKYVFET------KAIQRMELLVLSTLEWKMHPVTP 196
+ LA+K EE P E A++V+ T K + RME LVL L + + T
Sbjct: 89 AAMLLASKFEEIYPP-------EVAEFVYITDDTYTKKQVLRMEHLVLKVLAFDLAAPTI 141
Query: 197 ISFLDHII---RRLGLKTSLHWEFLKRCERLLLTLVSDSRSVSYLPSVLATA 245
FL + K FL L+L+ + YLPSV+A A
Sbjct: 142 NQFLTQYFLHQQPANCKVESLAMFLGE-----LSLIDADPYLKYLPSVIAAA 188
>pdb|1JST|B Chain B, Phosphorylated Cyclin-Dependent Kinase-2 Bound To Cyclin A
pdb|1JST|D Chain D, Phosphorylated Cyclin-Dependent Kinase-2 Bound To Cyclin A
pdb|1GY3|B Chain B, Pcdk2CYCLIN A IN COMPLEX WITH MGADP, NITRATE AND PEPTIDE
SUBSTRATE
pdb|1GY3|D Chain D, Pcdk2CYCLIN A IN COMPLEX WITH MGADP, NITRATE AND PEPTIDE
SUBSTRATE
pdb|1H1P|B Chain B, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu2058
pdb|1H1P|D Chain D, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu2058
pdb|1H1Q|B Chain B, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu6094
pdb|1H1Q|D Chain D, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu6094
pdb|1H1R|B Chain B, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu6086
pdb|1H1R|D Chain D, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu6086
pdb|1H1S|B Chain B, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu6102
pdb|1H1S|D Chain D, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu6102
pdb|1P5E|B Chain B, The Strucure Of Phospho-Cdk2CYCLIN A IN COMPLEX WITH THE
Inhibitor 4,5,6,7-Tetrabromobenzotriazole (Tbs)
pdb|1P5E|D Chain D, The Strucure Of Phospho-Cdk2CYCLIN A IN COMPLEX WITH THE
Inhibitor 4,5,6,7-Tetrabromobenzotriazole (Tbs)
pdb|1PKD|B Chain B, The Crystal Structure Of Ucn-01 In Complex With Phospho-
Cdk2CYCLIN A
pdb|1PKD|D Chain D, The Crystal Structure Of Ucn-01 In Complex With Phospho-
Cdk2CYCLIN A
pdb|2C6T|B Chain B, Crystal Structure Of The Human Cdk2 Complexed With The
Triazolopyrimidine Inhibitor
pdb|2C6T|D Chain D, Crystal Structure Of The Human Cdk2 Complexed With The
Triazolopyrimidine Inhibitor
pdb|2CJM|B Chain B, Mechanism Of Cdk Inhibition By Active Site
Phosphorylation: Cdk2 Y15p T160p In Complex With Cyclin
A Structure
pdb|2CJM|D Chain D, Mechanism Of Cdk Inhibition By Active Site
Phosphorylation: Cdk2 Y15p T160p In Complex With Cyclin
A Structure
pdb|2CCI|B Chain B, Crystal Structure Of Phospho-Cdk2 Cyclin A In Complex With
A Peptide Containing Both The Substrate And Recruitment
Sites Of Cdc6
pdb|2CCI|D Chain D, Crystal Structure Of Phospho-Cdk2 Cyclin A In Complex With
A Peptide Containing Both The Substrate And Recruitment
Sites Of Cdc6
pdb|2UZB|B Chain B, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZB|D Chain D, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZD|B Chain B, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZD|D Chain D, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZE|B Chain B, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZE|D Chain D, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZL|B Chain B, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZL|D Chain D, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|4EOI|B Chain B, Thr 160 Phosphorylated Cdk2 K89d, Q131e - Human Cyclin A3
Complex With The Inhibitor Ro3306
pdb|4EOI|D Chain D, Thr 160 Phosphorylated Cdk2 K89d, Q131e - Human Cyclin A3
Complex With The Inhibitor Ro3306
pdb|4EOJ|B Chain B, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human
Cyclin A3 Complex With Atp
pdb|4EOJ|D Chain D, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human
Cyclin A3 Complex With Atp
pdb|4EOK|B Chain B, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human
Cyclin A3 Complex With The Inhibitor Nu6102
pdb|4EOK|D Chain D, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human
Cyclin A3 Complex With The Inhibitor Nu6102
pdb|4EOL|B Chain B, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human
Cyclin A3 Complex With The Inhibitor Ro3306
pdb|4EOL|D Chain D, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human
Cyclin A3 Complex With The Inhibitor Ro3306
pdb|4EOM|B Chain B, Thr 160 Phosphorylated Cdk2 H84s, Q85m, Q131e - Human
Cyclin A3 Complex With Atp
pdb|4EOM|D Chain D, Thr 160 Phosphorylated Cdk2 H84s, Q85m, Q131e - Human
Cyclin A3 Complex With Atp
pdb|4EON|B Chain B, Thr 160 Phosphorylated Cdk2 H84s, Q85m, Q131e - Human
Cyclin A3 Complex With The Inhibitor Ro3306
pdb|4EON|D Chain D, Thr 160 Phosphorylated Cdk2 H84s, Q85m, Q131e - Human
Cyclin A3 Complex With The Inhibitor Ro3306
pdb|4EOO|B Chain B, Thr 160 Phosphorylated Cdk2 Q131e - Human Cyclin A3
Complex With Atp
pdb|4EOO|D Chain D, Thr 160 Phosphorylated Cdk2 Q131e - Human Cyclin A3
Complex With Atp
pdb|4EOP|B Chain B, Thr 160 Phosphorylated Cdk2 Q131e - Human Cyclin A3
Complex With The Inhibitor Ro3306
pdb|4EOP|D Chain D, Thr 160 Phosphorylated Cdk2 Q131e - Human Cyclin A3
Complex With The Inhibitor Ro3306
pdb|4EOQ|B Chain B, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex
With Atp
pdb|4EOQ|D Chain D, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex
With Atp
pdb|4EOR|B Chain B, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex
With The Inhibitor Nu6102
pdb|4EOR|D Chain D, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex
With The Inhibitor Nu6102
pdb|4EOS|B Chain B, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex
With The Inhibitor Ro3306
pdb|4EOS|D Chain D, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex
With The Inhibitor Ro3306
Length = 258
Score = 55.1 bits (131), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 53/172 (30%), Positives = 76/172 (44%), Gaps = 24/172 (13%)
Query: 83 KDSDVLVVARSEAVEWVLKVNAHYGFSTLTAILAINYLDRFLRSFHFQIDKPWMIQLLAV 142
K D+ R+ V+W+++V Y T LA+NY+DRFL S K +QL+
Sbjct: 28 KQPDITNSMRAILVDWLVEVGEEYKLQNETLHLAVNYIDRFLSSMSVLRGK---LQLVGT 84
Query: 143 TCLSLAAKVEETQVPLLLDLQVEGAKYVFET------KAIQRMELLVLSTLEWKMHPVTP 196
+ LA+K EE P E A++V+ T K + RME LVL L + + T
Sbjct: 85 AAMLLASKFEEIYPP-------EVAEFVYITDDTYTKKQVLRMEHLVLKVLTFDLAAPTV 137
Query: 197 ISFLDHII---RRLGLKTSLHWEFLKRCERLLLTLVSDSRSVSYLPSVLATA 245
FL + K FL L+L+ + YLPSV+A A
Sbjct: 138 NQFLTQYFLHQQPANCKVESLAMFLGE-----LSLIDADPYLKYLPSVIAGA 184
>pdb|3F5X|B Chain B, Cdk-2-Cyclin Complex With Indazole Inhibitor 9 Bound At
Its Active Site
pdb|3F5X|D Chain D, Cdk-2-Cyclin Complex With Indazole Inhibitor 9 Bound At
Its Active Site
Length = 256
Score = 54.7 bits (130), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 53/172 (30%), Positives = 76/172 (44%), Gaps = 24/172 (13%)
Query: 83 KDSDVLVVARSEAVEWVLKVNAHYGFSTLTAILAINYLDRFLRSFHFQIDKPWMIQLLAV 142
K D+ R+ V+W+++V Y T LA+NY+DRFL S K +QL+
Sbjct: 26 KQPDITNSMRAILVDWLVEVGEEYKLQNETLHLAVNYIDRFLSSMSVLRGK---LQLVGT 82
Query: 143 TCLSLAAKVEETQVPLLLDLQVEGAKYVFET------KAIQRMELLVLSTLEWKMHPVTP 196
+ LA+K EE P E A++V+ T K + RME LVL L + + T
Sbjct: 83 AAMLLASKFEEIYPP-------EVAEFVYITDDTYTKKQVLRMEHLVLKVLTFDLAAPTV 135
Query: 197 ISFLDHII---RRLGLKTSLHWEFLKRCERLLLTLVSDSRSVSYLPSVLATA 245
FL + K FL L+L+ + YLPSV+A A
Sbjct: 136 NQFLTQYFLHQQPANCKVESLAMFLGE-----LSLIDADPYLKYLPSVIAGA 182
>pdb|3QHR|B Chain B, Structure Of A Pcdk2CYCLINA TRANSITION-State Mimic
pdb|3QHR|D Chain D, Structure Of A Pcdk2CYCLINA TRANSITION-State Mimic
pdb|3QHW|B Chain B, Structure Of A Pcdk2CYCLINA TRANSITION-State Mimic
pdb|3QHW|D Chain D, Structure Of A Pcdk2CYCLINA TRANSITION-State Mimic
Length = 261
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 52/172 (30%), Positives = 76/172 (44%), Gaps = 24/172 (13%)
Query: 83 KDSDVLVVARSEAVEWVLKVNAHYGFSTLTAILAINYLDRFLRSFHFQIDKPWMIQLLAV 142
+ D+ R+ V+W+++V Y T LA+NY+DRFL S K +QL+
Sbjct: 31 RQPDITNSMRAILVDWLVEVGEEYKLQNETLHLAVNYIDRFLSSMSVLRGK---LQLVGT 87
Query: 143 TCLSLAAKVEETQVPLLLDLQVEGAKYVFET------KAIQRMELLVLSTLEWKMHPVTP 196
+ LA+K EE P E A++V+ T K + RME LVL L + + T
Sbjct: 88 AAMLLASKFEEIYPP-------EVAEFVYITDDTYSKKQVLRMEHLVLKVLAFDLAAPTV 140
Query: 197 ISFLDHIIRRL---GLKTSLHWEFLKRCERLLLTLVSDSRSVSYLPSVLATA 245
FL L K FL L+L+ + YLPS++A A
Sbjct: 141 NQFLTQYFLHLQPANCKVESLAMFLGE-----LSLIDADPYLKYLPSLIAGA 187
>pdb|4I3Z|B Chain B, Structure Of Pcdk2CYCLINA BOUND TO ADP AND 2 MAGNESIUM
IONS
pdb|4I3Z|D Chain D, Structure Of Pcdk2CYCLINA BOUND TO ADP AND 2 MAGNESIUM
IONS
Length = 257
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 52/172 (30%), Positives = 76/172 (44%), Gaps = 24/172 (13%)
Query: 83 KDSDVLVVARSEAVEWVLKVNAHYGFSTLTAILAINYLDRFLRSFHFQIDKPWMIQLLAV 142
+ D+ R+ V+W+++V Y T LA+NY+DRFL S K +QL+
Sbjct: 28 RQPDITNSMRAILVDWLVEVGEEYKLQNETLHLAVNYIDRFLSSMSVLRGK---LQLVGT 84
Query: 143 TCLSLAAKVEETQVPLLLDLQVEGAKYVFET------KAIQRMELLVLSTLEWKMHPVTP 196
+ LA+K EE P E A++V+ T K + RME LVL L + + T
Sbjct: 85 AAMLLASKFEEIYPP-------EVAEFVYITDDTYSKKQVLRMEHLVLKVLAFDLAAPTV 137
Query: 197 ISFLDHIIRRL---GLKTSLHWEFLKRCERLLLTLVSDSRSVSYLPSVLATA 245
FL L K FL L+L+ + YLPS++A A
Sbjct: 138 NQFLTQYFLHLQPANCKVESLAMFLGE-----LSLIDADPYLKYLPSLIAGA 184
>pdb|4II5|B Chain B, Structure Of Pcdk2/cyclina Bound To Adp And 1 Magnesium
Ion
pdb|4II5|D Chain D, Structure Of Pcdk2/cyclina Bound To Adp And 1 Magnesium
Ion
Length = 258
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 52/172 (30%), Positives = 76/172 (44%), Gaps = 24/172 (13%)
Query: 83 KDSDVLVVARSEAVEWVLKVNAHYGFSTLTAILAINYLDRFLRSFHFQIDKPWMIQLLAV 142
+ D+ R+ V+W+++V Y T LA+NY+DRFL S K +QL+
Sbjct: 28 RQPDITNSMRAILVDWLVEVGEEYKLQNETLHLAVNYIDRFLSSMSVLRGK---LQLVGT 84
Query: 143 TCLSLAAKVEETQVPLLLDLQVEGAKYVFET------KAIQRMELLVLSTLEWKMHPVTP 196
+ LA+K EE P E A++V+ T K + RME LVL L + + T
Sbjct: 85 AAMLLASKFEEIYPP-------EVAEFVYITDDTYSKKQVLRMEHLVLKVLAFDLAAPTV 137
Query: 197 ISFLDHIIRRL---GLKTSLHWEFLKRCERLLLTLVSDSRSVSYLPSVLATA 245
FL L K FL L+L+ + YLPS++A A
Sbjct: 138 NQFLTQYFLHLQPANCKVESLAMFLGE-----LSLIDADPYLKYLPSLIAGA 184
>pdb|2W9Z|A Chain A, Crystal Structure Of Cdk4 In Complex With A D-Type Cyclin
Length = 257
Score = 48.1 bits (113), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 42/156 (26%), Positives = 75/156 (48%), Gaps = 4/156 (2%)
Query: 86 DVLVVARSEAVEWVLKVNAHYGFSTLTAILAINYLDRFLRSFHFQIDKPWMIQLLAVTCL 145
+VL R W+L+V LA+NYLDRFL + K +QLL TC+
Sbjct: 37 EVLPSMRKIVATWMLEVCEEQKCEEEVFPLAMNYLDRFL---SLEPVKKSRLQLLGATCM 93
Query: 146 SLAAKVEETQVPLLLDLQVEGAKYVFETKAIQRMELLVLSTLEWKMHPVTPISFLDHIIR 205
+A+K++ET +PL + + + +MELL+++ L+W + +TP F++H +
Sbjct: 94 FVASKMKET-IPLTAEKLCIYTDNSIRPEELLQMELLLVNKLKWNLAAMTPHDFIEHFLS 152
Query: 206 RLGLKTSLHWEFLKRCERLLLTLVSDSRSVSYLPSV 241
++ K + + +D + +S PS+
Sbjct: 153 KMPEAEENKQIIRKHAQTFVALCATDVKFISNPPSM 188
>pdb|1W98|B Chain B, The Structural Basis Of Cdk2 Activation By Cyclin E
Length = 283
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 61/112 (54%), Gaps = 7/112 (6%)
Query: 92 RSEAVEWVLKVNAHYGFSTLTAILAINYLDRFLRSFHFQIDKPWMIQLLAVTCLSLAAKV 151
R+ ++W+++V Y T LA ++ DR++ + + ++QL+ ++ L +AAK+
Sbjct: 50 RAILLDWLMEVCEVYKLHRETFYLAQDFFDRYMATQENVVKT--LLQLIGISSLFIAAKL 107
Query: 152 EETQVPLLLDLQ--VEGAKYVFETKAIQRMELLVLSTLEWKMHPVTPISFLD 201
EE P L +GA I MEL+++ L+W++ P+T +S+L+
Sbjct: 108 EEIYPPKLHQFAYVTDGA---CSGDEILTMELMIMKALKWRLSPLTIVSWLN 156
>pdb|2W96|A Chain A, Crystal Structure Of Cdk4 In Complex With A D-Type Cyclin
pdb|2W99|A Chain A, Crystal Structure Of Cdk4 In Complex With A D-Type Cyclin
pdb|2W9F|A Chain A, Crystal Structure Of Cdk4 In Complex With A D-Type Cyclin
Length = 271
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/156 (26%), Positives = 75/156 (48%), Gaps = 4/156 (2%)
Query: 86 DVLVVARSEAVEWVLKVNAHYGFSTLTAILAINYLDRFLRSFHFQIDKPWMIQLLAVTCL 145
+VL R W+L+V LA+NYLDRFL + K +QLL TC+
Sbjct: 51 EVLPSMRKIVATWMLEVCEEQKCEEEVFPLAMNYLDRFL---SLEPVKKSRLQLLGATCM 107
Query: 146 SLAAKVEETQVPLLLDLQVEGAKYVFETKAIQRMELLVLSTLEWKMHPVTPISFLDHIIR 205
+A+K++ET +PL + + + +MELL+++ L+W + +TP F++H +
Sbjct: 108 FVASKMKET-IPLTAEKLCIYTDNSIRPEELLQMELLLVNKLKWNLAAMTPHDFIEHFLS 166
Query: 206 RLGLKTSLHWEFLKRCERLLLTLVSDSRSVSYLPSV 241
++ K + + +D + +S PS+
Sbjct: 167 KMPEAEENKQIIRKHAQTFVALCATDVKFISNPPSM 202
>pdb|2JGZ|B Chain B, Crystal Structure Of Phospho-Cdk2 In Complex With Cyclin B
Length = 260
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/109 (23%), Positives = 54/109 (49%), Gaps = 4/109 (3%)
Query: 92 RSEAVEWVLKVNAHYGFSTLTAILAINYLDRFLRSFHFQIDKPWMIQLLAVTCLSLAAKV 151
R+ ++W+++V + T + ++ +DRF+++ M+QL+ VT + +A+K
Sbjct: 36 RAILIDWLVQVQMKFRLLQETMYMTVSIIDRFMQN---NCVPKKMLQLVGVTAMFIASKY 92
Query: 152 EETQVPLLLDLQVEGAKYVFETKAIQRMELLVLSTLEWKMHPVTPISFL 200
EE P + D + I++ME+ +L L + + P+ FL
Sbjct: 93 EEMYPPEIGDFAFVTDN-TYTKHQIRQMEMKILRALNFGLGRPLPLHFL 140
>pdb|2B9R|A Chain A, Crystal Structure Of Human Cyclin B1
pdb|2B9R|B Chain B, Crystal Structure Of Human Cyclin B1
Length = 269
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 56/109 (51%), Gaps = 4/109 (3%)
Query: 92 RSEAVEWVLKVNAHYGFSTLTAILAINYLDRFLRSFHFQIDKPWMIQLLAVTCLSLAAKV 151
R+ ++W+++V + T + ++ +DRF+++ + K M+QL+ VT + +A+K
Sbjct: 38 RAILIDWLVQVQMKFRLLQETMYMTVSIIDRFMQN--NSVPKK-MLQLVGVTAMFIASKY 94
Query: 152 EETQVPLLLDLQVEGAKYVFETKAIQRMELLVLSTLEWKMHPVTPISFL 200
EE P + D + I++ME+ +L L + + P+ FL
Sbjct: 95 EEMYPPEIGDFAFVTDN-TYTKHQIRQMEMKILRALNFGLGRPLPLHFL 142
>pdb|2I53|A Chain A, Crystal Structure Of Cyclin K
Length = 258
Score = 35.4 bits (80), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 43/171 (25%), Positives = 70/171 (40%), Gaps = 24/171 (14%)
Query: 92 RSEAVEWVLKVNAHYGFSTLTAILAINYLDRFLRSFHFQIDKPWMIQLLAVTCLSLAAKV 151
R E ++ V G T I Y RF + F K + + CL LA KV
Sbjct: 41 RREGARFIFDVGTRLGLHYDTLATGIIYFHRF---YMFHSFKQFPRYVTGACCLFLAGKV 97
Query: 152 EE----------TQVPLLLDLQVEGAKYVFETKAIQRMELLVLSTLEWKMHPVTPISFLD 201
EE T LL D+Q G + + +E ++L T+++ + P FL
Sbjct: 98 EETPKKCKDIIKTARSLLNDVQF-GQFGDDPKEEVMVLERILLQTIKFDLQVEHPYQFLL 156
Query: 202 HIIRRL-GLKTSLHWEFLKRCERLLLTLVSDS----RSVSYLPSVLATATM 247
++L G K +++ ++ T V+DS S+ + P ++A A M
Sbjct: 157 KYAKQLKGDKNK-----IQKLVQMAWTFVNDSLCTTLSLQWEPEIIAVAVM 202
>pdb|2IVX|A Chain A, Crystal Structure Of Human Cyclin T2 At 1.8 A Resolution
(Casp Target)
pdb|2IVX|B Chain B, Crystal Structure Of Human Cyclin T2 At 1.8 A Resolution
(Casp Target)
Length = 257
Score = 32.7 bits (73), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 36/142 (25%), Positives = 64/142 (45%), Gaps = 26/142 (18%)
Query: 84 DSDVLVVARSEAVEWVLKVNAHYGFSTLTAILAINYLDRFLRSFHF-QIDKPWMIQLLAV 142
++D + R +A + ++ S LT AI Y+ RF F + +K +++
Sbjct: 23 EADKELSCRQQAANLIQEMGQRLNVSQLTINTAIVYMHRFYMHHSFTKFNK----NIISS 78
Query: 143 TCLSLAAKVEETQVPL----------------LLDLQVEGAKYVFETKAIQRMELLVLST 186
T L LAAKVEE L LLD + + Y+ +T+ + +E ++L T
Sbjct: 79 TALFLAAKVEEQARKLEHVIKVAHACLHPLEPLLDTKCDA--YLQQTRELVILETIMLQT 136
Query: 187 LEWKM---HPVTPISFLDHIIR 205
L +++ HP T + ++R
Sbjct: 137 LGFEITIEHPHTDVVKCTQLVR 158
>pdb|1HCI|A Chain A, Crystal Structure Of The Rod Domain Of Alpha-Actinin
pdb|1HCI|B Chain B, Crystal Structure Of The Rod Domain Of Alpha-Actinin
Length = 476
Score = 28.1 bits (61), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 36/70 (51%), Gaps = 4/70 (5%)
Query: 175 AIQRMELLVLSTLEWKMHPVTPISFLDHIIRRLGLKTSLH--WEFLKRCERLLLTLVSDS 232
A QR+E EW ++ + + L+H+ + K S H W + K E++LL +S
Sbjct: 104 AWQRLEQAEKGYEEWLLNEIRRLERLEHLAEKFRQKASTHETWAYGK--EQILLQKDYES 161
Query: 233 RSVSYLPSVL 242
S++ + ++L
Sbjct: 162 ASLTEVRALL 171
>pdb|3JUI|A Chain A, Crystal Structure Of The C-terminal Domain Of Human
Translation Initiation Factor Eif2b Epsilon Subunit
Length = 182
Score = 28.1 bits (61), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 21/34 (61%)
Query: 262 YQNQLLGVLKISKEKVSDCYKLILELANAKTNAN 295
+QN++LG L+ KE+ C L+LE+ + K N
Sbjct: 14 FQNEVLGTLQRGKEENISCDNLVLEINSLKYAYN 47
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.135 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,247,488
Number of Sequences: 62578
Number of extensions: 267390
Number of successful extensions: 561
Number of sequences better than 100.0: 32
Number of HSP's better than 100.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 506
Number of HSP's gapped (non-prelim): 33
length of query: 375
length of database: 14,973,337
effective HSP length: 100
effective length of query: 275
effective length of database: 8,715,537
effective search space: 2396772675
effective search space used: 2396772675
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)