Query 017247
Match_columns 375
No_of_seqs 326 out of 1812
Neff 7.2
Searched_HMMs 29240
Date Mon Mar 25 11:21:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017247.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017247hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3g33_B CCND3 protein; Ser/Thr 100.0 4.4E-47 1.5E-51 367.2 21.8 235 51-291 31-268 (306)
2 2f2c_A Cyclin homolog, V-cycli 100.0 1.7E-45 5.7E-50 347.2 22.4 232 52-291 14-249 (254)
3 1g3n_C V-cyclin; cyclin-depend 100.0 8E-46 2.7E-50 350.0 19.8 235 51-292 12-250 (257)
4 1f5q_B Gamma herpesvirus cycli 100.0 1.6E-45 5.5E-50 346.8 13.7 229 50-291 14-243 (252)
5 2cch_B Cyclin A2, cyclin-A; co 100.0 3.4E-44 1.2E-48 339.4 19.9 236 57-305 6-243 (260)
6 2w96_A G1/S-specific cyclin-D1 100.0 6.3E-44 2.2E-48 339.5 19.3 234 52-292 19-259 (271)
7 2b9r_A Human cyclin B1; cell c 100.0 3.2E-43 1.1E-47 334.4 17.9 234 57-305 6-242 (269)
8 1w98_B Cyclin E, G1/S-specific 100.0 1E-41 3.4E-46 326.3 21.6 222 52-290 10-242 (283)
9 2ivx_A Cyclin-T2; transcriptio 100.0 5.4E-34 1.9E-38 268.7 18.1 195 87-291 26-241 (257)
10 2i53_A Cyclin K; cell cycle, t 100.0 7.8E-34 2.7E-38 267.6 17.9 199 87-291 36-252 (258)
11 3rgf_B Cyclin-C; protein kinas 100.0 5.4E-34 1.8E-38 273.0 16.1 193 87-291 38-243 (285)
12 1zp2_A RNA polymerase II holoe 100.0 9.7E-33 3.3E-37 257.0 14.4 188 92-291 28-221 (235)
13 2pk2_A Cyclin-T1, protein TAT; 100.0 3.1E-32 1E-36 268.5 13.1 195 87-291 33-248 (358)
14 1jkw_A Cyclin H; cell cycle, c 100.0 9.2E-30 3.2E-34 247.7 19.5 196 89-291 54-262 (323)
15 1c9b_A General transcription f 99.9 3.9E-26 1.3E-30 208.3 17.7 187 90-290 3-189 (207)
16 1ais_B TFB TFIIB, protein (tra 99.9 2.8E-22 9.7E-27 181.7 18.5 185 90-289 7-194 (200)
17 3k7a_M Transcription initiatio 99.7 7.5E-19 2.6E-23 172.2 5.1 183 91-288 125-320 (345)
18 4bbr_M Transcription initiatio 99.4 9.7E-14 3.3E-18 135.8 7.3 183 92-289 126-321 (345)
19 2pmi_B PHO85 cyclin PHO80, ami 98.2 7.1E-06 2.4E-10 77.6 9.9 106 95-206 77-184 (293)
20 1ais_B TFB TFIIB, protein (tra 96.5 0.013 4.4E-07 51.9 9.5 87 195-288 11-97 (200)
21 1c9b_A General transcription f 95.9 0.034 1.2E-06 49.5 9.5 87 196-289 8-94 (207)
22 4bbr_M Transcription initiatio 93.5 0.23 7.9E-06 47.9 8.9 88 195-289 128-215 (345)
23 3k7a_M Transcription initiatio 91.6 0.1 3.5E-06 50.4 3.4 86 197-289 130-215 (345)
24 1zp2_A RNA polymerase II holoe 91.0 0.88 3E-05 41.0 8.9 86 197-289 32-126 (235)
25 2i53_A Cyclin K; cell cycle, t 86.9 2.2 7.6E-05 38.7 8.6 87 97-188 153-250 (258)
26 2ivx_A Cyclin-T2; transcriptio 86.1 4 0.00014 37.0 9.8 86 97-187 148-238 (257)
27 2b9r_A Human cyclin B1; cell c 84.4 4.5 0.00016 37.1 9.5 85 198-288 43-129 (269)
28 3rgf_B Cyclin-C; protein kinas 83.7 3.7 0.00013 38.1 8.6 85 198-288 48-148 (285)
29 2w96_A G1/S-specific cyclin-D1 83.1 6.8 0.00023 35.8 10.1 85 199-289 63-149 (271)
30 1jkw_A Cyclin H; cell cycle, c 82.9 7.2 0.00025 36.9 10.4 83 199-288 63-154 (323)
31 2f2c_A Cyclin homolog, V-cycli 82.8 7.9 0.00027 35.0 10.3 87 197-289 56-144 (254)
32 2pk2_A Cyclin-T1, protein TAT; 81.3 3.7 0.00013 39.6 7.8 86 97-187 155-245 (358)
33 3h4c_A Transcription factor TF 80.9 12 0.0004 33.3 10.0 149 94-253 14-170 (260)
34 2cch_B Cyclin A2, cyclin-A; co 79.8 4.9 0.00017 36.6 7.8 84 199-288 45-130 (260)
35 1g3n_C V-cyclin; cyclin-depend 79.2 6.7 0.00023 35.6 8.5 86 198-289 56-143 (257)
36 3g33_B CCND3 protein; Ser/Thr 77.2 10 0.00035 35.5 9.3 85 198-288 76-162 (306)
37 1w98_B Cyclin E, G1/S-specific 72.3 14 0.00049 34.0 8.8 72 216-289 69-143 (283)
38 1f5q_B Gamma herpesvirus cycli 45.5 81 0.0028 28.4 8.6 84 199-288 55-140 (252)
39 2pmi_B PHO85 cyclin PHO80, ami 36.2 1.2E+02 0.0041 28.2 8.2 87 194-286 75-164 (293)
40 3m03_A ORC6, origin recognitio 28.8 1.9E+02 0.0064 22.2 6.9 82 99-188 6-92 (95)
41 3i6x_A P195, RAS GTPase-activa 20.5 1.3E+02 0.0043 26.1 5.1 79 89-183 112-191 (193)
No 1
>3g33_B CCND3 protein; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}
Probab=100.00 E-value=4.4e-47 Score=367.24 Aligned_cols=235 Identities=23% Similarity=0.319 Sum_probs=204.7
Q ss_pred cccCCCCcHHHHHHHHHHHHhccCCcccccccCCCcchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhccccc
Q 017247 51 LEQDLFWEDEELLSLFSKEEQQLLKQETQTHYKDSDVLVVARSEAVEWVLKVNAHYGFSTLTAILAINYLDRFLRSFHFQ 130 (375)
Q Consensus 51 l~~~~~~~~e~l~~Ll~kE~~~~~~~~y~~~lq~~~~~~~~R~~~v~Wi~~v~~~~~l~~~T~~lAV~ylDRfLs~~~v~ 130 (375)
-|++++|++|++.+|+++|.++.|..+|+...|.+ ++..+|..+|+||++|+.+|+++++|+++||+|||||+++..+.
T Consensus 31 ~dp~l~~~~~i~~~l~~~E~~~~p~~~y~~~~q~~-i~~~~R~~lvdwl~ev~~~~~l~~~t~~lAv~~lDRfls~~~v~ 109 (306)
T 3g33_B 31 PDPRLLGDQRVLQSLLRLEERYVPRASYFQCVQRE-IKPHMRKMLAYWMLEVCEEQRCEEEVFPLAMNYLDRYLSCVPTR 109 (306)
T ss_dssp ------CHHHHHHHHHHHGGGGSCSSCCTTTSTTT-CCHHHHHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHHCCCC
T ss_pred CCCcccchHHHHHHHHHHHHHhCCCcHHHhhcCcc-CCHHHHHHHHHHHHHHHHHhCCcHhHHHHHHHHHHHHHhcCCCc
Confidence 56778899999999999999999988898877776 99999999999999999999999999999999999999999887
Q ss_pred cCCchhHHHHHHHHHHhhhhhcccCCCcccce-eeeCCCccccHHHHHHHHHHHHHHcCccccCCChHHHHHHHHHHhCC
Q 017247 131 IDKPWMIQLLAVTCLSLAAKVEETQVPLLLDL-QVEGAKYVFETKAIQRMELLVLSTLEWKMHPVTPISFLDHIIRRLGL 209 (375)
Q Consensus 131 ~~~~~~lqLvavaCL~LAaK~eE~~vp~l~dl-~v~~~~~~f~~~~I~~mE~~IL~~L~w~l~~~Tp~~FL~~fl~~l~~ 209 (375)
+.+ +||+|+|||+||+|+||..+|.+.++ .+++. .|++++|.+||+.||++|+|+++.|||++||.+|++.++.
T Consensus 110 ~~~---lqLv~~tcL~lAsK~eE~~p~~~~~l~~~~~~--~~~~~~i~~mE~~IL~~L~f~l~~~tp~~fl~~~l~~l~~ 184 (306)
T 3g33_B 110 KAQ---LQLLGAVCMLLASKLRETTPLTIEKLCIYTDH--AVSPRQLRDWEVLVLGKLKWDLAAVIAHDFLAFILHRLSL 184 (306)
T ss_dssp GGG---HHHHHHHHHHHHHHHHCSSCCCTTHHHHHTTT--SSCHHHHHHHHHHHHHHTTTCCCCCCGGGGHHHHHHTSSC
T ss_pred HHH---HHHHHHHHHHHHHHhccCCCCCHHHHHHHhcc--CccHHHHHHHHHHHHHHcCCccCCCCHHHHHHHHHHHcCC
Confidence 666 99999999999999999989999998 55444 5589999999999999999999999999999999999987
Q ss_pred CCcchHHHHHHHHHHHHhhcccccccCCCHHHHHHHHHHHHHHHhCCCCC--CCcccchhhccCCCHHHHHHHHHHHHHH
Q 017247 210 KTSLHWEFLKRCERLLLTLVSDSRSVSYLPSVLATATMMHIIDQVEPVNP--VDYQNQLLGVLKISKEKVSDCYKLILEL 287 (375)
Q Consensus 210 ~~~~~~~~l~~~~~ll~~~l~d~~~l~~~PS~IAaAal~~a~~~l~~~~~--~~~~~~L~~~~~i~~~~l~~C~~~i~~l 287 (375)
...........+.++++.++.++.|++|+||+||||||++|+..++.... ..|...|..++||+.++|++|++.|.++
T Consensus 185 ~~~~~~~~~~~a~~~l~lsl~d~~~l~~~PS~IAaAai~lA~~~l~~~~~w~~~w~~~L~~~tg~~~~~l~~c~~~I~~l 264 (306)
T 3g33_B 185 PRDRQALVKKHAQTFLALCATDYTFAMYPPSMIATGSIGAAVQGLGACSMSGDELTELLAGITGTEVDCLRACQEQIEAA 264 (306)
T ss_dssp CTTTHHHHHHHHHHHHHHHHHCGGGTTSCHHHHHHHHHHHHHHTCC---CCHHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHHHHhhhhhccCCHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 75543334456788999999999999999999999999999998874321 2356788899999999999999999999
Q ss_pred HHhc
Q 017247 288 ANAK 291 (375)
Q Consensus 288 ~~~~ 291 (375)
+.+.
T Consensus 265 ~~~~ 268 (306)
T 3g33_B 265 LRES 268 (306)
T ss_dssp HHTC
T ss_pred HHHH
Confidence 9765
No 2
>2f2c_A Cyclin homolog, V-cyclin; small molecule inhibitor bound between N-terminal and C-TERM domain of kinase, cell cycle-transferase complex; HET: AP9; 2.80A {Herpesvirus saimiri} SCOP: a.74.1.1 a.74.1.1 PDB: 1jow_A* 2euf_A* 1xo2_A* 1bu2_A
Probab=100.00 E-value=1.7e-45 Score=347.23 Aligned_cols=232 Identities=15% Similarity=0.209 Sum_probs=203.3
Q ss_pred ccCCCCcHHHHHHHHHHHHhccCCcccccccCCCcchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhcccccc
Q 017247 52 EQDLFWEDEELLSLFSKEEQQLLKQETQTHYKDSDVLVVARSEAVEWVLKVNAHYGFSTLTAILAINYLDRFLRSFHFQI 131 (375)
Q Consensus 52 ~~~~~~~~e~l~~Ll~kE~~~~~~~~y~~~lq~~~~~~~~R~~~v~Wi~~v~~~~~l~~~T~~lAV~ylDRfLs~~~v~~ 131 (375)
|+.+++++|++. |+++|.++.|..+|+...|.+ ++..+|..+|+||++|+.+|+++++|+++||+|+|||+++..+++
T Consensus 14 dp~l~~~~~i~~-l~~~E~~~~p~~~y~~~~q~~-i~~~~R~~lvdwl~~v~~~~~l~~etl~lAv~~~DRfls~~~v~~ 91 (254)
T 2f2c_A 14 DSTTMKDPRVLN-NLKLRELLLPKFTSLWEIQTE-VTVDNRTILLTWMHLLCESFELDKSVFPLSVSILDRYLCKKQGTK 91 (254)
T ss_dssp CHHHHTCHHHHH-HHHHHHTTSCCCSSTTTTCSS-CCHHHHHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHTTTSCCCT
T ss_pred CcccccHHHHHH-HHHHHHhhCCCchhhhhcCcc-CCHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHccCCcCH
Confidence 445567799999 999999999988888766655 999999999999999999999999999999999999999999988
Q ss_pred CCchhHHHHHHHHHHhhhhhcccCCCcccce-eeeCCCccccHHHHHHHHHHHHHHcCccccCCChHHHHHHHHHHhCCC
Q 017247 132 DKPWMIQLLAVTCLSLAAKVEETQVPLLLDL-QVEGAKYVFETKAIQRMELLVLSTLEWKMHPVTPISFLDHIIRRLGLK 210 (375)
Q Consensus 132 ~~~~~lqLvavaCL~LAaK~eE~~vp~l~dl-~v~~~~~~f~~~~I~~mE~~IL~~L~w~l~~~Tp~~FL~~fl~~l~~~ 210 (375)
.+ +||+|+|||+||||+||..+|.+.++ .+++ +.|++++|.+||+.||++|+|++++|||++|+.+|++.++.+
T Consensus 92 ~~---lqLv~~acl~iA~K~eE~~~p~~~d~~~~~~--~~~~~~~i~~mE~~IL~~L~~~l~~~tp~~fl~~~~~~~~~~ 166 (254)
T 2f2c_A 92 KT---LQKIGAACVLIGSKIRTVKPMTVSKLTYLSC--DCFTNLELINQEKDILEALKWDTEAVLATDFLIPLCNALKIP 166 (254)
T ss_dssp TT---HHHHHHHHHHHHHHHHCSSCCCHHHHSTTC-----CCHHHHHHHHHHHHHHTTTCCCCCCGGGSHHHHHHHTTCC
T ss_pred HH---ccHHHHHHHHHHHHhcccCCCCHHHHHHHhC--CCCCHHHHHHHHHHHHHHCCCcCCCCCHHHHHHHHHHHcCCC
Confidence 88 99999999999999999999999998 4444 456999999999999999999999999999999999999886
Q ss_pred CcchHHHHHHHHHHHHhhcccccccCCCHHHHHHHHHHHHHHHhCCCCCCCc---ccchhhccCCCHHHHHHHHHHHHHH
Q 017247 211 TSLHWEFLKRCERLLLTLVSDSRSVSYLPSVLATATMMHIIDQVEPVNPVDY---QNQLLGVLKISKEKVSDCYKLILEL 287 (375)
Q Consensus 211 ~~~~~~~l~~~~~ll~~~l~d~~~l~~~PS~IAaAal~~a~~~l~~~~~~~~---~~~L~~~~~i~~~~l~~C~~~i~~l 287 (375)
......+...+.++++.++.|+.|++|+||.|||||+++|+...+ .....| ...|..++||++++|++|++.|.++
T Consensus 167 ~~~~~~~~~~a~~ll~~~l~d~~~~~~~PS~iAaAai~la~~~~~-~~~~~w~~~~~~l~~~tg~~~~~l~~c~~~i~~~ 245 (254)
T 2f2c_A 167 EDLWPQLYEAASTTICKALIQPNIALLSPGLICAGGLLTTIETDN-TNCRPWTCYLEDLSSILNFSTNTVRTVKDQVSEA 245 (254)
T ss_dssp GGGHHHHHHHHHHHHHHHTTSGGGTTSCHHHHHHHHHHHHHHTTC-CSSCCTHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHcCcchhccCHHHHHHHHHHHHHHhcC-CCCCChHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 654322345688999999999999999999999999999998752 222235 7889999999999999999999999
Q ss_pred HHhc
Q 017247 288 ANAK 291 (375)
Q Consensus 288 ~~~~ 291 (375)
+.+-
T Consensus 246 ~~~~ 249 (254)
T 2f2c_A 246 FSLY 249 (254)
T ss_dssp HHTC
T ss_pred HHhC
Confidence 8653
No 3
>1g3n_C V-cyclin; cyclin-dependent kinase, INK4 inhibitor, viral cyclin, cell cycle, signaling protein; 2.90A {Human herpesvirus 8} SCOP: a.74.1.1 a.74.1.1
Probab=100.00 E-value=8e-46 Score=349.98 Aligned_cols=235 Identities=17% Similarity=0.182 Sum_probs=205.8
Q ss_pred cccCCCCcHHHHHHHHHHHHhccCCcccccccCCCcchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhccccc
Q 017247 51 LEQDLFWEDEELLSLFSKEEQQLLKQETQTHYKDSDVLVVARSEAVEWVLKVNAHYGFSTLTAILAINYLDRFLRSFHFQ 130 (375)
Q Consensus 51 l~~~~~~~~e~l~~Ll~kE~~~~~~~~y~~~lq~~~~~~~~R~~~v~Wi~~v~~~~~l~~~T~~lAV~ylDRfLs~~~v~ 130 (375)
-|+++.|++|++ +|+++|.++.|..+|+...|.+ ++..+|..+|+||++|+.+|+++++|+++||+|+|||+++..+.
T Consensus 12 ~dp~~~~~~~i~-~l~~~E~~~~p~~~y~~~~q~~-i~~~~R~~lvdwl~ev~~~~~l~~etl~lAv~~~DRfls~~~v~ 89 (257)
T 1g3n_C 12 LDPTLCEDRIFY-NILEIEPRFLTSDSVFGTFQQS-LTSHMRKLLGTWMFSVCQEYNLEPNVVALALNLLDRLLLIKQVS 89 (257)
T ss_dssp ----CHHHHHHH-HHHHHGGGGCCCGGGHHHHTSS-CCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTCCCC
T ss_pred CCCccccHHHHH-HHHHHHHHhCCChhHHHhcCcc-CCHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHccCCCC
Confidence 456677889999 9999999999988888666665 99999999999999999999999999999999999999999888
Q ss_pred cCCchhHHHHHHHHHHhhhhhcccCCCcccce-eeeCCCccccHHHHHHHHHHHHHHcCccccCCChHHHHHHHHHHhCC
Q 017247 131 IDKPWMIQLLAVTCLSLAAKVEETQVPLLLDL-QVEGAKYVFETKAIQRMELLVLSTLEWKMHPVTPISFLDHIIRRLGL 209 (375)
Q Consensus 131 ~~~~~~lqLvavaCL~LAaK~eE~~vp~l~dl-~v~~~~~~f~~~~I~~mE~~IL~~L~w~l~~~Tp~~FL~~fl~~l~~ 209 (375)
+.+ +||+|+|||+||||+||..+|.+.++ .++++ .|++++|.+||+.||++|+|++++|||++|+.+|++.++.
T Consensus 90 ~~~---lqLv~~acl~iA~K~eE~~~p~~~d~~~~~~~--~~~~~~i~~mE~~iL~~L~~~l~~~tp~~fl~~~~~~~~~ 164 (257)
T 1g3n_C 90 KEH---FQKTGSACLLVASKLRSLTPISTSSLCYAAAD--SFSRQELIDQEKELLEKLAWRTEAVLATDVTSFLLLKLVG 164 (257)
T ss_dssp HHH---HHHHHHHHHHHHHHHHCSSCCCHHHHHHHTTT--CSCHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHHHHSC
T ss_pred HHH---HHHHHHHHHHHHHHHccccCCCHHHHHHHHCC--CCCHHHHHHHHHHHHHHCCCcCCCCCHHHHHHHHHHHcCC
Confidence 777 99999999999999999999999999 55554 4589999999999999999999999999999999999987
Q ss_pred CCcchHHHHHHHHHHHHhhcccccccCCCHHHHHHHHHHHHHHHhCCC---CCCCcccchhhccCCCHHHHHHHHHHHHH
Q 017247 210 KTSLHWEFLKRCERLLLTLVSDSRSVSYLPSVLATATMMHIIDQVEPV---NPVDYQNQLLGVLKISKEKVSDCYKLILE 286 (375)
Q Consensus 210 ~~~~~~~~l~~~~~ll~~~l~d~~~l~~~PS~IAaAal~~a~~~l~~~---~~~~~~~~L~~~~~i~~~~l~~C~~~i~~ 286 (375)
+......+...+.++++.++.|+.|++|+||.|||||+++|+..++.. ....|...|..++||++++|.+|++.|.+
T Consensus 165 ~~~~~~~~~~~a~~~le~~l~d~~~~~~~PS~iAaAai~lA~~~l~~~~~~~~~~w~~~l~~~t~~~~~~l~~c~~~i~~ 244 (257)
T 1g3n_C 165 GSQHLDFWHHEVNTLITKALVDPLTGSLPASIISAAGCALLVPANVIPQDTHSGGVVPQLASILGCDVSVLQAAVEQILT 244 (257)
T ss_dssp SSTTHHHHHHHHHHHHHHHHTSTTGGGSCHHHHHHHHHHHHCCGGGSCC-----CHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHHHHhCcchhCcCHHHHHHHHHHHHHHHhCCCcccchhhHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 665432334568899999999999999999999999999999887632 12569999999999999999999999999
Q ss_pred HHHhcC
Q 017247 287 LANAKT 292 (375)
Q Consensus 287 l~~~~~ 292 (375)
++.+..
T Consensus 245 l~~~~~ 250 (257)
T 1g3n_C 245 SVSDFD 250 (257)
T ss_dssp HHHHCC
T ss_pred HHHHCC
Confidence 997653
No 4
>1f5q_B Gamma herpesvirus cyclin; herpesviral cyclin, cyclin dependent kinase. protein/protein complex, transferase; 2.50A {Murid herpesvirus 4} SCOP: a.74.1.1 a.74.1.1
Probab=100.00 E-value=1.6e-45 Score=346.84 Aligned_cols=229 Identities=17% Similarity=0.173 Sum_probs=194.4
Q ss_pred ccccCCCCcHHHHHHHHHHHHhccCCcccccccCCCcchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhcccc
Q 017247 50 LLEQDLFWEDEELLSLFSKEEQQLLKQETQTHYKDSDVLVVARSEAVEWVLKVNAHYGFSTLTAILAINYLDRFLRSFHF 129 (375)
Q Consensus 50 ~l~~~~~~~~e~l~~Ll~kE~~~~~~~~y~~~lq~~~~~~~~R~~~v~Wi~~v~~~~~l~~~T~~lAV~ylDRfLs~~~v 129 (375)
..|++++ +|+++.+|+++|.++.| ...|. .++..+|..+|+||++|+.+|+++++|+++||+|+||||++..+
T Consensus 14 ~~dp~l~-~d~i~~~l~~~E~~~~p-----~~~q~-~i~~~~R~~lvdWl~ev~~~~~l~~eT~~lAv~~lDRfLs~~~v 86 (252)
T 1f5q_B 14 LLNEEDC-RQMIYRSEREHDARMVG-----VNVDQ-HFTSQYRKVLTTWMFCVCKDLRQDNNVFPLAVALLDELFLSTRI 86 (252)
T ss_dssp TCCHHHH-HHHHHHHHHHHHHHHSS-----SSHHH-HHHCSHHHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHHSCC
T ss_pred cCCHHHh-HHHHHHHHHHHHHHhCc-----CccCC-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhcCCCc
Confidence 4566664 67999999999999987 22343 48889999999999999999999999999999999999999998
Q ss_pred ccCCchhHHHHHHHHHHhhhhhcccCCCcccce-eeeCCCccccHHHHHHHHHHHHHHcCccccCCChHHHHHHHHHHhC
Q 017247 130 QIDKPWMIQLLAVTCLSLAAKVEETQVPLLLDL-QVEGAKYVFETKAIQRMELLVLSTLEWKMHPVTPISFLDHIIRRLG 208 (375)
Q Consensus 130 ~~~~~~~lqLvavaCL~LAaK~eE~~vp~l~dl-~v~~~~~~f~~~~I~~mE~~IL~~L~w~l~~~Tp~~FL~~fl~~l~ 208 (375)
++.+ +||+|+|||+||+|+||+.+|.+.++ .++++ .|++++|++||+.||++|+|+++.|||++|+.+|++.++
T Consensus 87 ~~~~---lqLvg~tcl~iAsK~eE~~p~~~~~l~~~~~~--~yt~~~i~~mE~~IL~~L~w~l~~pTp~~FL~~~l~~~~ 161 (252)
T 1f5q_B 87 DREN---YQSTAAVALHIAGKVRAYMPIKATQLAYLCGG--ATTADKLLTLEVKSLDTLSWVADRCLSTDLICYILHIMH 161 (252)
T ss_dssp CGGG---HHHHHHHHHHHHHHHHCSSCCCHHHHHHHHCT--TCCHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHHHTT
T ss_pred CHHH---HHHHHHHHHHHHHHHHhcCCCCHHHHHHHhCC--CCCHHHHHHHHHHHHHHCCCccCCCCHHHHHHHHHHHcC
Confidence 8777 99999999999999999999999998 55554 569999999999999999999999999999999999998
Q ss_pred CCCcchHHHHHHHHHHHHhhcccccccCCCHHHHHHHHHHHHHHHhCCCCCCCcccchhhccCCCHHHHHHHHHHHHHHH
Q 017247 209 LKTSLHWEFLKRCERLLLTLVSDSRSVSYLPSVLATATMMHIIDQVEPVNPVDYQNQLLGVLKISKEKVSDCYKLILELA 288 (375)
Q Consensus 209 ~~~~~~~~~l~~~~~ll~~~l~d~~~l~~~PS~IAaAal~~a~~~l~~~~~~~~~~~L~~~~~i~~~~l~~C~~~i~~l~ 288 (375)
.+......+...|.++++.++.|+.|+.|+||+|||||+.+++....+ ....|...|.+++||++++|.+|++.|.+++
T Consensus 162 ~~~~~~~~~~~~a~~~l~~~l~d~~~l~~~PS~iAaaa~~~~l~~~~~-~~~~~~~~L~~~t~~~~~~l~~C~~~i~~~l 240 (252)
T 1f5q_B 162 APREDYLNIYNLCRPKIFCALCDGRSAMKRPVLITLACMHLTMNQKYD-YYENRIDGVCKSLYITKEELHQCCDLVDIAI 240 (252)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHCHHHHTSCHHHHHHHHHHHHHTTTCH-HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred CCcchHHHHHHHHHHHHHHHHhchhhhccCHHHHHHHHHHHHhccCCC-chhhHHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 765433345567889999999999999999999999997666522110 0112356788899999999999999999998
Q ss_pred Hhc
Q 017247 289 NAK 291 (375)
Q Consensus 289 ~~~ 291 (375)
.+-
T Consensus 241 ~~~ 243 (252)
T 1f5q_B 241 VSF 243 (252)
T ss_dssp HHC
T ss_pred HHh
Confidence 653
No 5
>2cch_B Cyclin A2, cyclin-A; complex(transferase/cell division), ATP-binding, CDK2, cell cycle, cyclin, mitosis, nuclear protein; HET: TPO ATP; 1.7A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1fvv_B* 1jsu_B* 1okv_B 1okw_B* 1ol1_B* 1ol2_B* 1urc_B 1fin_B* 2c5p_B* 2c5o_B* 2i40_B* 2wev_B* 2wfy_B 2whb_B* 3eid_B* 3ej1_B* 3eoc_B* 2wha_B* 2x1n_B* 1vyw_B* ...
Probab=100.00 E-value=3.4e-44 Score=339.36 Aligned_cols=236 Identities=22% Similarity=0.300 Sum_probs=212.3
Q ss_pred CcHHHHHHHHHHHHhccCCcccccccCCCcchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhccccccCCchh
Q 017247 57 WEDEELLSLFSKEEQQLLKQETQTHYKDSDVLVVARSEAVEWVLKVNAHYGFSTLTAILAINYLDRFLRSFHFQIDKPWM 136 (375)
Q Consensus 57 ~~~e~l~~Ll~kE~~~~~~~~y~~~lq~~~~~~~~R~~~v~Wi~~v~~~~~l~~~T~~lAV~ylDRfLs~~~v~~~~~~~ 136 (375)
|.+|++.+|.+.|.++.|..+|+.. |. +++..+|..+|+||.+|+.+|+++++|+++||+|+|||++...+++.+
T Consensus 6 Y~~di~~~l~~~E~~~~p~~~y~~~-q~-~i~~~~R~~lvdwl~~v~~~~~l~~~tl~lAv~~lDRfls~~~v~~~~--- 80 (260)
T 2cch_B 6 YHEDIHTYLREMEVKCKPKVGYMKK-QP-DITNSMRAILVDWLVEVGEEYKLQNETLHLAVNYIDRFLSSMSVLRGK--- 80 (260)
T ss_dssp THHHHHHHHHHHHHHTCCCTTGGGG-CS-SCCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCCCCHHH---
T ss_pred HHHHHHHHHHHHHhhcCCCchhhhc-CC-CCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhccCCCCHHH---
Confidence 7899999999999999998888874 44 499999999999999999999999999999999999999999998777
Q ss_pred HHHHHHHHHHhhhhhcccCCCcccce-eeeCCCccccHHHHHHHHHHHHHHcCccccCCChHHHHHHHHHHhCCCCcchH
Q 017247 137 IQLLAVTCLSLAAKVEETQVPLLLDL-QVEGAKYVFETKAIQRMELLVLSTLEWKMHPVTPISFLDHIIRRLGLKTSLHW 215 (375)
Q Consensus 137 lqLvavaCL~LAaK~eE~~vp~l~dl-~v~~~~~~f~~~~I~~mE~~IL~~L~w~l~~~Tp~~FL~~fl~~l~~~~~~~~ 215 (375)
+|++|+|||+||||+||..+|.+.++ .++++ .|++++|.+||+.||++|+|++++|||++|+.+|+..++.++.
T Consensus 81 lqlv~~acl~iA~K~ee~~~~~~~d~~~i~~~--~~~~~~i~~mE~~iL~~L~~~l~~~tp~~fl~~~~~~l~~~~~--- 155 (260)
T 2cch_B 81 LQLVGTAAMLLASKFEEIYPPEVAEFVYITDD--TYTKKQVLRMEHLVLKVLTFDLAAPTVNQFLTQYFLHQQPANC--- 155 (260)
T ss_dssp HHHHHHHHHHHHHHHHCSSCCCHHHHHHHTTS--SSCHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHTTCSSCCH---
T ss_pred HhHHHHHHHHHHHHhcccCCCCHHHHHHHHcC--CcCHHHHHHHHHHHHHHcCCccCCCCHHHHHHHHHHHcCCChH---
Confidence 99999999999999999999999999 45554 4589999999999999999999999999999999999887542
Q ss_pred HHHHHHHHHHHhhccccc-ccCCCHHHHHHHHHHHHHHHhCCCCCCCcccchhhccCCCHHHHHHHHHHHHHHHHhcCCC
Q 017247 216 EFLKRCERLLLTLVSDSR-SVSYLPSVLATATMMHIIDQVEPVNPVDYQNQLLGVLKISKEKVSDCYKLILELANAKTNA 294 (375)
Q Consensus 216 ~~l~~~~~ll~~~l~d~~-~l~~~PS~IAaAal~~a~~~l~~~~~~~~~~~L~~~~~i~~~~l~~C~~~i~~l~~~~~~~ 294 (375)
.+...+.++++.++.++. |++|+||.|||||+++|...++. ..|...|..++|+++++|++|++.|.+++.+....
T Consensus 156 ~~~~~a~~l~e~sl~~~~~~~~~~Ps~iAaAai~lA~~~~~~---~~w~~~l~~~~g~~~~~i~~~~~~l~~~~~~~~~~ 232 (260)
T 2cch_B 156 KVESLAMFLGELSLIDADPYLKYLPSVIAGAAFHLALYTVTG---QSWPESLIRKTGYTLESLKPCLMDLHQTYLKAPQH 232 (260)
T ss_dssp HHHHHHHHHHHHHHHCHHHHTTSCHHHHHHHHHHHHHHHHHS---CCSCHHHHHHHCCCHHHHHHHHHHHHHHHHHGGGS
T ss_pred HHHHHHHHHHHHHHHhHHHHhCCCHHHHHHHHHHHHHHHhCC---CcchHHHHHHhCcCHHHHHHHHHHHHHHHHhcCCc
Confidence 455678889999899999 99999999999999999988864 45889999999999999999999999999876655
Q ss_pred CCCccccccCC
Q 017247 295 NSNPHKRKFEA 305 (375)
Q Consensus 295 ~~~~~~~k~~s 305 (375)
..+++++||.+
T Consensus 233 ~~~~i~~Ky~~ 243 (260)
T 2cch_B 233 AQQSIREKYKN 243 (260)
T ss_dssp SCCHHHHHHTS
T ss_pred chHHHHHHHCc
Confidence 56678888864
No 6
>2w96_A G1/S-specific cyclin-D1; serine/threonine-protein kinase, chromosomal rearrangement, ATP-binding, transferase, polymorphism, cell division; 2.30A {Homo sapiens} PDB: 2w99_A 2w9f_A 2w9z_A
Probab=100.00 E-value=6.3e-44 Score=339.46 Aligned_cols=234 Identities=23% Similarity=0.342 Sum_probs=200.4
Q ss_pred ccCCCCcHHHHHHHHHHHHhccCCcccccccCCCcchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhcccccc
Q 017247 52 EQDLFWEDEELLSLFSKEEQQLLKQETQTHYKDSDVLVVARSEAVEWVLKVNAHYGFSTLTAILAINYLDRFLRSFHFQI 131 (375)
Q Consensus 52 ~~~~~~~~e~l~~Ll~kE~~~~~~~~y~~~lq~~~~~~~~R~~~v~Wi~~v~~~~~l~~~T~~lAV~ylDRfLs~~~v~~ 131 (375)
|++++ ++|++.+|+++|.++.|..+|+...|.+ ++..+|..+|+||.+|+.+|+++++|+++||+|+|||+++..+++
T Consensus 19 dp~~~-~~~i~~~l~~~E~~~~p~~~y~~~~q~~-i~~~~R~~lv~wl~~v~~~~~l~~~tl~lAv~~lDRfls~~~v~~ 96 (271)
T 2w96_A 19 DANLL-NDRVLRAMLKAEETCAPSVSYFKCVQKE-VLPSMRKIVATWMLEVCEEQKCEEEVFPLAMNYLDRFLSLEPVKK 96 (271)
T ss_dssp -------CHHHHHHHHHHHHTCCCTTHHHHTCSS-CCHHHHHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHTTSCCCT
T ss_pred CCccc-HHHHHHHHHHHHHHhCCCchHHHhcCCc-CCHHHHHHHHHHHHHHHHHHCCchhHHHHHHHHHHHhCCcCCcCH
Confidence 33443 6899999999999999988888777765 999999999999999999999999999999999999999999998
Q ss_pred CCchhHHHHHHHHHHhhhhhcccCCCcccce-eeeCCCccccHHHHHHHHHHHHHHcCccccCCChHHHHHHHHHHhCCC
Q 017247 132 DKPWMIQLLAVTCLSLAAKVEETQVPLLLDL-QVEGAKYVFETKAIQRMELLVLSTLEWKMHPVTPISFLDHIIRRLGLK 210 (375)
Q Consensus 132 ~~~~~lqLvavaCL~LAaK~eE~~vp~l~dl-~v~~~~~~f~~~~I~~mE~~IL~~L~w~l~~~Tp~~FL~~fl~~l~~~ 210 (375)
.+ +|++|+|||+||||+||+.+|.+.++ .+++ +.|++++|.+||+.||++|+|++++|||++||.+|++.++.+
T Consensus 97 ~~---lqlv~~acL~iAsK~EE~~p~~~~~~~~~~~--~~~~~~eI~~mE~~IL~~L~~~l~~~tp~~fl~~~~~~l~~~ 171 (271)
T 2w96_A 97 SR---LQLLGATCMFVASKMKETIPLTAEKLCIYTD--NSIRPEELLQMELLLVNKLKWNLAAMTPHDFIEHFLSKMPEA 171 (271)
T ss_dssp TT---HHHHHHHHHHHHHHHHCSSCCCHHHHHHHTT--TSSCHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHHTSCCC
T ss_pred HH---HHHHHHHHHHHHHHHhhcCCCCHHHHHHHhc--CCCCHHHHHHHHHHHHHHCCCccCCCCHHHHHHHHHHHcCCC
Confidence 88 99999999999999999988899988 4444 456999999999999999999999999999999999999876
Q ss_pred CcchHHHHHHHHHHHHhhcccccccCCCHHHHHHHHHHHHHHHhCC--CCC----CCcccchhhccCCCHHHHHHHHHHH
Q 017247 211 TSLHWEFLKRCERLLLTLVSDSRSVSYLPSVLATATMMHIIDQVEP--VNP----VDYQNQLLGVLKISKEKVSDCYKLI 284 (375)
Q Consensus 211 ~~~~~~~l~~~~~ll~~~l~d~~~l~~~PS~IAaAal~~a~~~l~~--~~~----~~~~~~L~~~~~i~~~~l~~C~~~i 284 (375)
......+...+.++++.++.|+.|++|+||.||||||++|+..++. ... ..|+..|..++||+.++|++|++.|
T Consensus 172 ~~~~~~~~~~a~~~l~~~~~d~~~~~~~PS~iAaAai~lA~~~l~~~~~~~~~w~~~~~~~l~~~~~v~~~~l~~c~~~i 251 (271)
T 2w96_A 172 EENKQIIRKHAQTFVALCATDVKFISNPPSMVAAGSVVAAVQGLNLRSPNNFLSYYRLTRFLSRVIKCDPDCLRACQEQI 251 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSTHHHHSCHHHHHHHHHHHHHHHHHHHSTTSCGGGTTHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhCcCCCCCCCcHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 4322122356888888889999999999999999999999987742 111 2355678889999999999999999
Q ss_pred HHHHHhcC
Q 017247 285 LELANAKT 292 (375)
Q Consensus 285 ~~l~~~~~ 292 (375)
.+++.+..
T Consensus 252 ~~l~~~~~ 259 (271)
T 2w96_A 252 EALLESSL 259 (271)
T ss_dssp HHHHTTTT
T ss_pred HHHHHHHH
Confidence 99997653
No 7
>2b9r_A Human cyclin B1; cell cycle; 2.90A {Homo sapiens} PDB: 2jgz_B*
Probab=100.00 E-value=3.2e-43 Score=334.37 Aligned_cols=234 Identities=18% Similarity=0.274 Sum_probs=208.8
Q ss_pred CcHHHHHHHHHHHHhccCCcccccccCCCcchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhccccccCCchh
Q 017247 57 WEDEELLSLFSKEEQQLLKQETQTHYKDSDVLVVARSEAVEWVLKVNAHYGFSTLTAILAINYLDRFLRSFHFQIDKPWM 136 (375)
Q Consensus 57 ~~~e~l~~Ll~kE~~~~~~~~y~~~lq~~~~~~~~R~~~v~Wi~~v~~~~~l~~~T~~lAV~ylDRfLs~~~v~~~~~~~ 136 (375)
|.+|++.+|.++|.++.+..+|+.. | +++..+|..+|+||.+|+.+|+++++|+++||+|+|||++...+++.+
T Consensus 6 Y~~di~~~l~~~E~~~~~~~~y~~~-q--~i~~~~R~~lv~wl~~v~~~~~l~~~tl~lAv~~lDRfl~~~~v~~~~--- 79 (269)
T 2b9r_A 6 YVKDIYAYLRQLEAAQAVRPKYLLG-R--EVTGNMRAILIDWLVQVQMKFRLLQETMYMTVSIIDRFMQNNSVPKKM--- 79 (269)
T ss_dssp -CCTTTTTHHHHHHTTCCCTTTTSS-S--SSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTTSCCCGGG---
T ss_pred HHHHHHHHHHHHHHhhCCCcccccC-C--CCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCcHHH---
Confidence 5678999999999999988888863 2 699999999999999999999999999999999999999999998887
Q ss_pred HHHHHHHHHHhhhhhcccCCCcccce-eeeCCCccccHHHHHHHHHHHHHHcCccccCCChHHHHHHHHHHhCCCCcchH
Q 017247 137 IQLLAVTCLSLAAKVEETQVPLLLDL-QVEGAKYVFETKAIQRMELLVLSTLEWKMHPVTPISFLDHIIRRLGLKTSLHW 215 (375)
Q Consensus 137 lqLvavaCL~LAaK~eE~~vp~l~dl-~v~~~~~~f~~~~I~~mE~~IL~~L~w~l~~~Tp~~FL~~fl~~l~~~~~~~~ 215 (375)
+|++|+|||+||||+||..+|.+.++ .++++ .|++++|.+||+.||++|+|++++|||++|+.+|+..++.+.
T Consensus 80 lqlv~~acL~iA~K~eE~~~p~~~d~~~~~~~--~~~~~eI~~mE~~IL~~L~f~l~~~tp~~fl~~~~~~~~~~~---- 153 (269)
T 2b9r_A 80 LQLVGVTAMFIASKYEEMYPPEIGDFAFVTDN--TYTKHQIRQMEMKILRALNFGLGRPLPLHFLRRASKIGEVDV---- 153 (269)
T ss_dssp HHHHHHHHHHHHHHHHCSSCCCHHHHHHHTCS--SSCHHHHHHHHHHHHHHTTSCCCCCCHHHHHHHHHHSSCCCH----
T ss_pred hhHHHHHHHHHHHhcccccCccHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCCccCCCCHHHHHHHHHHhcCCCH----
Confidence 99999999999999999999999999 55544 459999999999999999999999999999999999877543
Q ss_pred HHHHHHHHHHHhhcccccccCCCHHHHHHHHHHHHHHHhCCCCCCCcccchhhccCCCHHHHHHHHHHHHHHHHhcCC--
Q 017247 216 EFLKRCERLLLTLVSDSRSVSYLPSVLATATMMHIIDQVEPVNPVDYQNQLLGVLKISKEKVSDCYKLILELANAKTN-- 293 (375)
Q Consensus 216 ~~l~~~~~ll~~~l~d~~~l~~~PS~IAaAal~~a~~~l~~~~~~~~~~~L~~~~~i~~~~l~~C~~~i~~l~~~~~~-- 293 (375)
+....|.++++.++.++.|++|+||.||||||++|+..++.. .|...|..++||++++|.+|++.|.+++.....
T Consensus 154 ~~~~~a~~l~e~sl~~~~~~~~~Ps~iAaAai~lA~~~l~~~---~w~~~l~~~tg~~~~~l~~~~~~l~~~~~~~~~~~ 230 (269)
T 2b9r_A 154 EQHTLAKYLMELTMLDYDMVHFPPSQIAAGAFSLALKILDNG---EWTPTLQHYLSYTEESLLPVMQHLAKNVVMVNQGL 230 (269)
T ss_dssp HHHHHHHHHHHHGGGCGGGSSSCTTHHHHHHHHHHHHHHTCC---CSCTTHHHHSCCCSSTTTTHHHHHHHHHHHTTTSC
T ss_pred HHHHHHHHHHHHHHhhhhhhcCCHHHHHHHHHHHHHHHhCCC---CCCHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCC
Confidence 455778999999999999999999999999999999998753 599999999999999999999999998865433
Q ss_pred CCCCccccccCC
Q 017247 294 ANSNPHKRKFEA 305 (375)
Q Consensus 294 ~~~~~~~~k~~s 305 (375)
...+++++||.+
T Consensus 231 ~~~~ai~~Ky~~ 242 (269)
T 2b9r_A 231 TKHMTVKNKYAT 242 (269)
T ss_dssp CSCCHHHHHTTS
T ss_pred cchHHHHHHhcc
Confidence 245678888863
No 8
>1w98_B Cyclin E, G1/S-specific cyclin E1; cell cycle, transferase; HET: TPO; 2.15A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=100.00 E-value=1e-41 Score=326.34 Aligned_cols=222 Identities=22% Similarity=0.344 Sum_probs=192.8
Q ss_pred ccCCCCc--HHHHHHHHHHHHhccCCcccccccCCCcchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhc-cc
Q 017247 52 EQDLFWE--DEELLSLFSKEEQQLLKQETQTHYKDSDVLVVARSEAVEWVLKVNAHYGFSTLTAILAINYLDRFLRS-FH 128 (375)
Q Consensus 52 ~~~~~~~--~e~l~~Ll~kE~~~~~~~~y~~~lq~~~~~~~~R~~~v~Wi~~v~~~~~l~~~T~~lAV~ylDRfLs~-~~ 128 (375)
+++++|+ +|++.+|+++|.++.+..+|+.. | .+++..+|..+|+||.+|+.+|+++++|+++||+|+|||++. ..
T Consensus 10 ~p~l~~~y~~~i~~~l~~~E~~~~~~~~y~~~-q-~~i~~~~R~~lv~wl~~v~~~~~l~~~tl~lAv~~lDRfls~~~~ 87 (283)
T 1w98_B 10 LPVLSWANREEVWKIMLNKEKTYLRDQHFLEQ-H-PLLQPKMRAILLDWLMEVCEVYKLHRETFYLAQDFFDRYMATQEN 87 (283)
T ss_dssp SCCCSSSCHHHHHHHHHHHTTTSCCCTTGGGG-C-TTCCHHHHHHHHHHHHHHHHHTTCBHHHHHHHHHHHHHHHHHCCC
T ss_pred CcchhhcCHHHHHHHHHHHHHHhCCCchhhcc-C-CCCCHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHhCCC
Confidence 4666665 49999999999999988888864 4 359999999999999999999999999999999999999998 56
Q ss_pred cccCCchhHHHHHHHHHHhhhhhcccCCCcccce-eeeCCCccccHHHHHHHHHHHHHHcCccccCCChHHHHHHHHHHh
Q 017247 129 FQIDKPWMIQLLAVTCLSLAAKVEETQVPLLLDL-QVEGAKYVFETKAIQRMELLVLSTLEWKMHPVTPISFLDHIIRRL 207 (375)
Q Consensus 129 v~~~~~~~lqLvavaCL~LAaK~eE~~vp~l~dl-~v~~~~~~f~~~~I~~mE~~IL~~L~w~l~~~Tp~~FL~~fl~~l 207 (375)
+.+.+ +||+|+|||+||||+||..+|.+.++ .++++ .|++++|.+||+.||++|+|++++|||++||.+|++.+
T Consensus 88 v~~~~---lqlv~~acL~iA~K~eE~~~p~l~~~~~i~~~--~~~~~ei~~mE~~IL~~L~~~l~~~tp~~fL~~f~~~~ 162 (283)
T 1w98_B 88 VVKTL---LQLIGISSLFIAAKLEEIYPPKLHQFAYVTDG--ACSGDEILTMELMIMKALKWRLSPLTIVSWLNVYMQVA 162 (283)
T ss_dssp CCGGG---HHHHHHHHHHHHHHHHCSSCCCHHHHHHTTTT--SSCHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHHHH
T ss_pred CCHHH---HHHHHHHHHHHHHHhcccCCCcHHHHHHHHcC--CCCHHHHHHHHHHHHHHcCCcCCCCCHHHHHHHHHHHh
Confidence 76655 99999999999999999999999999 55544 45899999999999999999999999999999999998
Q ss_pred CCCCcc-------hHHHHHHHHHHHHhhcccccccCCCHHHHHHHHHHHHHHHhCCCCCCCcccchhhccCCCHHHHHHH
Q 017247 208 GLKTSL-------HWEFLKRCERLLLTLVSDSRSVSYLPSVLATATMMHIIDQVEPVNPVDYQNQLLGVLKISKEKVSDC 280 (375)
Q Consensus 208 ~~~~~~-------~~~~l~~~~~ll~~~l~d~~~l~~~PS~IAaAal~~a~~~l~~~~~~~~~~~L~~~~~i~~~~l~~C 280 (375)
+.++.. .......+.++++.++.|+.|++|+||.||||||++|. |.+.+..++||++++|++|
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~llelsl~d~~~l~~~PS~iAaAai~la~----------~~~~l~~~tg~~~~~i~~c 232 (283)
T 1w98_B 163 YLNDLHEVLLPQYPQQIFIQIAELLDLCVLDVDCLEFPYGILAASALYHFS----------SSELMQKVSGYQWCDIENC 232 (283)
T ss_dssp TCCSSCCSSSCCSCHHHHHHHHHHHHHHHHSGGGGGSCHHHHHHHHHHHTS----------CHHHHHHHSCCCHHHHHHH
T ss_pred ccCchhhHHHHhhhHHHHHHHHHHHHHHHhhhhhhcCCHHHHHHHHHHHHH----------ChHHHHHHhCCCHHHHHHH
Confidence 765431 11223346678888999999999999999999999884 4677889999999999999
Q ss_pred HHHHHHHHHh
Q 017247 281 YKLILELANA 290 (375)
Q Consensus 281 ~~~i~~l~~~ 290 (375)
++.|..++..
T Consensus 233 ~~~l~~~~~~ 242 (283)
T 1w98_B 233 VKWMVPFAMV 242 (283)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999988753
No 9
>2ivx_A Cyclin-T2; transcription regulation, cell division, phosphorylation, NU protein, cell cycle, transcription; 1.8A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_A 3mi9_B* 3mia_B* 3tnh_B* 3tni_B* 3blh_B* 3blq_B* 3blr_B* 3lq5_B* 3my1_B* 3tn8_B*
Probab=100.00 E-value=5.4e-34 Score=268.75 Aligned_cols=195 Identities=18% Similarity=0.209 Sum_probs=166.7
Q ss_pred chHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhccccccCCchhHHHHHHHHHHhhhhhcccCCCccccee-e-
Q 017247 87 VLVVARSEAVEWVLKVNAHYGFSTLTAILAINYLDRFLRSFHFQIDKPWMIQLLAVTCLSLAAKVEETQVPLLLDLQ-V- 164 (375)
Q Consensus 87 ~~~~~R~~~v~Wi~~v~~~~~l~~~T~~lAV~ylDRfLs~~~v~~~~~~~lqLvavaCL~LAaK~eE~~vp~l~dl~-v- 164 (375)
....+|..+++||.+++.+|+++++|+++|++|||||++...+.+.+ +|++|+|||+||||+||+ +|.+.++. +
T Consensus 26 ~e~~~R~~~~~~i~~v~~~l~l~~~t~~~A~~~~dRf~~~~~~~~~~---~qlv~~acL~lA~K~EE~-p~~l~d~~~~~ 101 (257)
T 2ivx_A 26 KELSCRQQAANLIQEMGQRLNVSQLTINTAIVYMHRFYMHHSFTKFN---KNIISSTALFLAAKVEEQ-ARKLEHVIKVA 101 (257)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTSCTTTSC---HHHHHHHHHHHHHHHTTC-CCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhhCChhhhC---HHHHHHHHHHHHhccccC-CcCHHHHHHHH
Confidence 45689999999999999999999999999999999999999998888 999999999999999999 78888872 1
Q ss_pred -------------eCCCccccHHHHHHHHHHHHHHcCccccCCChHHHHHHHHHHhCCCCcchHHHHHHHHHHHHhhcc-
Q 017247 165 -------------EGAKYVFETKAIQRMELLVLSTLEWKMHPVTPISFLDHIIRRLGLKTSLHWEFLKRCERLLLTLVS- 230 (375)
Q Consensus 165 -------------~~~~~~f~~~~I~~mE~~IL~~L~w~l~~~Tp~~FL~~fl~~l~~~~~~~~~~l~~~~~ll~~~l~- 230 (375)
.+..|.+.+++|.+||+.||++|+|+++++||+.||..|++.++.+. ++...|++++..++.
T Consensus 102 ~~~~~~~~~~~~~~~~~y~~~~~~I~~~E~~iL~~L~f~l~~~~P~~fl~~~~~~l~~~~----~~~~~A~~~~~~sl~~ 177 (257)
T 2ivx_A 102 HACLHPLEPLLDTKCDAYLQQTRELVILETIMLQTLGFEITIEHPHTDVVKCTQLVRASK----DLAQTSYFMATNSLHL 177 (257)
T ss_dssp HHHHCTTSCCCCTTSHHHHHHHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHHHTTCCH----HHHHHHHHHHHHHHHH
T ss_pred HHHhccCCCCCCcchHHHHHHHHHHHHHHHHHHHHcccceEeeCcHHHHHHHHHHhCCCc----HHHHHHHHHHHhhhhc
Confidence 12334444999999999999999999999999999999999998653 566778888888874
Q ss_pred cccccCCCHHHHHHHHHHHHHHHhCCCC-----CCCcccchhhccCCCHHHHHHHHHHHHHHHHhc
Q 017247 231 DSRSVSYLPSVLATATMMHIIDQVEPVN-----PVDYQNQLLGVLKISKEKVSDCYKLILELANAK 291 (375)
Q Consensus 231 d~~~l~~~PS~IAaAal~~a~~~l~~~~-----~~~~~~~L~~~~~i~~~~l~~C~~~i~~l~~~~ 291 (375)
+..+++|+||.||+|||++|...++... ...|...+ ..+|+.++|++|++.|.+++.+.
T Consensus 178 ~~~~l~~~Ps~IAaAai~lA~~~~~~~~p~~~~~~~W~~~~--~~~~~~~~l~~~~~~i~~~~~~~ 241 (257)
T 2ivx_A 178 TTFCLQYKPTVIACVCIHLACKWSNWEIPVSTDGKHWWEYV--DPTVTLELLDELTHEFLQILEKT 241 (257)
T ss_dssp CCGGGTSCHHHHHHHHHHHHHHHHTCCCCCCTTCCCGGGGT--CSSCCHHHHHHHHHHHHHHHHTS
T ss_pred ccHHHcCCHHHHHHHHHHHHHHHhCCCCCCCCCCchHHHHh--CCCCCHHHHHHHHHHHHHHHHhC
Confidence 5558999999999999999999876321 23465543 34899999999999999999654
No 10
>2i53_A Cyclin K; cell cycle, transcription, cyclin BOX, CDK9, positive transcription elongation factor, P-TEFB; 1.50A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=100.00 E-value=7.8e-34 Score=267.61 Aligned_cols=199 Identities=19% Similarity=0.234 Sum_probs=168.3
Q ss_pred chHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhccccccCCchhHHHHHHHHHHhhhhhcccCCCccccee-e-
Q 017247 87 VLVVARSEAVEWVLKVNAHYGFSTLTAILAINYLDRFLRSFHFQIDKPWMIQLLAVTCLSLAAKVEETQVPLLLDLQ-V- 164 (375)
Q Consensus 87 ~~~~~R~~~v~Wi~~v~~~~~l~~~T~~lAV~ylDRfLs~~~v~~~~~~~lqLvavaCL~LAaK~eE~~vp~l~dl~-v- 164 (375)
....+|..+++||.+++.+|+++++|+++|++|||||+++..+.+.+ +|++|+|||+||||+||. +|.+.++. +
T Consensus 36 ~e~~~R~~~~~~i~~v~~~l~l~~~t~~~A~~~~dRf~~~~~~~~~~---~qlv~~acL~lA~K~eE~-~~~l~d~~~~~ 111 (258)
T 2i53_A 36 TEARYRREGARFIFDVGTRLGLHYDTLATGIIYFHRFYMFHSFKQFP---RYVTGACCLFLAGKVEET-PKKCKDIIKTA 111 (258)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTSCTTTSC---HHHHHHHHHHHHHHHTTC-CCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCChhhcC---HHHHHHHHHHHHHccccc-cccHHHHHHHH
Confidence 67789999999999999999999999999999999999999998888 999999999999999996 77788873 1
Q ss_pred ----eCCCcc----ccHHHHHHHHHHHHHHcCccccCCChHHHHHHHHHHhCCCCcchHHHHHHHHHHHHhhcccccccC
Q 017247 165 ----EGAKYV----FETKAIQRMELLVLSTLEWKMHPVTPISFLDHIIRRLGLKTSLHWEFLKRCERLLLTLVSDSRSVS 236 (375)
Q Consensus 165 ----~~~~~~----f~~~~I~~mE~~IL~~L~w~l~~~Tp~~FL~~fl~~l~~~~~~~~~~l~~~~~ll~~~l~d~~~l~ 236 (375)
.+..|. .++++|.+||+.||++|+|+++++||++|+.+|++.++.+.....++...|.++++.++.+..+++
T Consensus 112 ~~~~~~~~~~~~~~~~~~~i~~~E~~iL~~L~f~l~~~~P~~fl~~~~~~l~~~~~~~~~~~~~A~~l~~~s~~~~~~l~ 191 (258)
T 2i53_A 112 RSLLNDVQFGQFGDDPKEEVMVLERILLQTIKFDLQVEHPYQFLLKYAKQLKGDKNKIQKLVQMAWTFVNDSLCTTLSLQ 191 (258)
T ss_dssp HHHSCHHHHGGGCSCHHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHHTBCSCHHHHHHHHHHHHHHHHHHTTTTGGGT
T ss_pred HHHhchhhhhhhhhhHHHHHHHHHHHHHHHCCCceeccChHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHcCCchhc
Confidence 112221 147899999999999999999999999999999999987643333567889999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhCCCC--------CCCcccchhhccCCCHHHHHHHHHHHHHHHHhc
Q 017247 237 YLPSVLATATMMHIIDQVEPVN--------PVDYQNQLLGVLKISKEKVSDCYKLILELANAK 291 (375)
Q Consensus 237 ~~PS~IAaAal~~a~~~l~~~~--------~~~~~~~L~~~~~i~~~~l~~C~~~i~~l~~~~ 291 (375)
|+||.||+|||++|.+.++... ...|...+ ..|++.++|++|++.|.+++...
T Consensus 192 ~~Ps~IAaAai~lA~~~~~~~~~~~~~~~~~~~W~~~~--~~~~~~~~l~~~~~~il~ly~~~ 252 (258)
T 2i53_A 192 WEPEIIAVAVMYLAGRLCKFEIQEWTSKPMYRRWWEQF--VQDVPVDVLEDICHQILDLYSQG 252 (258)
T ss_dssp SCHHHHHHHHHHHHHHHHTCCGGGGBSSCCSSCGGGGT--SSSCCHHHHHHHHHHHHTTTSSS
T ss_pred cChHHHHHHHHHHHHHHhCCCCCccccCCCcccHHHHh--ccCCCHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999876321 11232221 35999999999999999988554
No 11
>3rgf_B Cyclin-C; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}
Probab=100.00 E-value=5.4e-34 Score=273.01 Aligned_cols=193 Identities=18% Similarity=0.192 Sum_probs=170.5
Q ss_pred chHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhccccccCCchhHHHHHHHHHHhhhhhcccCCCccccee-e-
Q 017247 87 VLVVARSEAVEWVLKVNAHYGFSTLTAILAINYLDRFLRSFHFQIDKPWMIQLLAVTCLSLAAKVEETQVPLLLDLQ-V- 164 (375)
Q Consensus 87 ~~~~~R~~~v~Wi~~v~~~~~l~~~T~~lAV~ylDRfLs~~~v~~~~~~~lqLvavaCL~LAaK~eE~~vp~l~dl~-v- 164 (375)
-...+|..+++||.+|+.+|+|+++|+++|++|||||+....+.+.+ +|++|+|||+||||+||+.+|.+.++. +
T Consensus 38 ~e~~~R~~~~~~I~~v~~~l~L~~~t~~tA~~~~~RF~~~~s~~~~~---~~lva~acLfLA~K~EE~~~~~~~di~~~~ 114 (285)
T 3rgf_B 38 EYWKLQIFFTNVIQALGEHLKLRQQVIATATVYFKRFYARYSLKSID---PVLMAPTCVFLASKVEEFGVVSNTRLIAAA 114 (285)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHSCTTTSC---HHHHHHHHHHHHHHHTTSCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhCCchhcC---HHHHHHHHHHHHHhhhccccccHHHHHHHH
Confidence 34578999999999999999999999999999999999999999888 999999999999999999877777762 1
Q ss_pred -----------eCCCccccHHHHHHHHHHHHHHcCccccCCChHHHHHHHHHHhCCCCcchHHHHHHHHHHHHhhccccc
Q 017247 165 -----------EGAKYVFETKAIQRMELLVLSTLEWKMHPVTPISFLDHIIRRLGLKTSLHWEFLKRCERLLLTLVSDSR 233 (375)
Q Consensus 165 -----------~~~~~~f~~~~I~~mE~~IL~~L~w~l~~~Tp~~FL~~fl~~l~~~~~~~~~~l~~~~~ll~~~l~d~~ 233 (375)
.+..|.+++++|.+||+.||++|+|+++++||++||.+|++.++.+. ++.+.|++++..++.+..
T Consensus 115 ~~~~k~~~~~~~~~~~~~~~~~Il~~E~~iL~~L~f~l~v~~P~~fL~~~~~~l~~~~----~~~~~A~~~l~~sl~t~~ 190 (285)
T 3rgf_B 115 TSVLKTRFSYAFPKEFPYRMNHILECEFYLLELMDCCLIVYHPYRPLLQYVQDMGQED----MLLPLAWRIVNDTYRTDL 190 (285)
T ss_dssp HHHHHHHCTTTCCSCCCCCHHHHHHHHHHHHHHTTTCCCCCCSHHHHHHHHHHHTCHH----HHHHHHHHHHHHHTTSSH
T ss_pred HHHHcccccccCchhhHHHHHHHHHHHHHHHHHcCCCeEeCChHHHHHHHHHHhCCCH----HHHHHHHHHHHHHHccCh
Confidence 23456678999999999999999999999999999999999998642 567889999999999999
Q ss_pred ccCCCHHHHHHHHHHHHHHHhCCCCCCCcccchhhccCCCHHHHHHHHHHHHHHHHhc
Q 017247 234 SVSYLPSVLATATMMHIIDQVEPVNPVDYQNQLLGVLKISKEKVSDCYKLILELANAK 291 (375)
Q Consensus 234 ~l~~~PS~IAaAal~~a~~~l~~~~~~~~~~~L~~~~~i~~~~l~~C~~~i~~l~~~~ 291 (375)
+++|+||.||+|||++|...++... ..|. ..+|++.++|.+|++.|.+++...
T Consensus 191 ~l~~~Ps~IAaAaiylA~~~~~~~~-~~W~----~~~~~~~~~l~~~~~~il~ly~~~ 243 (285)
T 3rgf_B 191 CLLYPPFMIALACLHVACVVQQKDA-RQWF----AELSVDMEKILEIIRVILKLYEQW 243 (285)
T ss_dssp HHHSCHHHHHHHHHHHHHHHTTCCC-HHHH----HTSCSCHHHHHHHHHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHHcCCCh-hhHH----HHHCCCHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999998876432 2343 457999999999999999998653
No 12
>1zp2_A RNA polymerase II holoenzyme cyclin-like subunit; cyclin repeat domains, transcription-cell cycle complex; 3.00A {Schizosaccharomyces pombe}
Probab=100.00 E-value=9.7e-33 Score=257.04 Aligned_cols=188 Identities=16% Similarity=0.127 Sum_probs=163.2
Q ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhcccccc-CCchhHHHHHHHHHHhhhhhcccCCCcccce-eeeC---
Q 017247 92 RSEAVEWVLKVNAHYGFSTLTAILAINYLDRFLRSFHFQI-DKPWMIQLLAVTCLSLAAKVEETQVPLLLDL-QVEG--- 166 (375)
Q Consensus 92 R~~~v~Wi~~v~~~~~l~~~T~~lAV~ylDRfLs~~~v~~-~~~~~lqLvavaCL~LAaK~eE~~vp~l~dl-~v~~--- 166 (375)
|..+++||.+++..++++++|+++|++|||||++...+.+ .+ +|++|+|||+||||+||. ++.+.++ .++.
T Consensus 28 R~~~~~~i~~v~~~l~L~~~t~~~A~~~~~Rf~~~~~~~~~~~---~~lv~~acL~lA~K~Ee~-~~~l~d~~~~~~~~~ 103 (235)
T 1zp2_A 28 TIYQWKVVQTFGDRLRLRQRVLATAIVLLRRYMLKKNEEKGFS---LEALVATCIYLSCKVEEC-PVHIRTICNEANDLW 103 (235)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCCSCCCCC---HHHHHHHHHHHHHHHTTC-CCCHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcccccccC---HHHHHHHHHHHHhccccC-cccHHHHHHHHHHHc
Confidence 9999999999999999999999999999999999999988 77 999999999999999997 6678887 3332
Q ss_pred -CCccccHHHHHHHHHHHHHHcCccccCCChHHHHHHHHHHhCCCCcchHHHHHHHHHHHHhhcccccccCCCHHHHHHH
Q 017247 167 -AKYVFETKAIQRMELLVLSTLEWKMHPVTPISFLDHIIRRLGLKTSLHWEFLKRCERLLLTLVSDSRSVSYLPSVLATA 245 (375)
Q Consensus 167 -~~~~f~~~~I~~mE~~IL~~L~w~l~~~Tp~~FL~~fl~~l~~~~~~~~~~l~~~~~ll~~~l~d~~~l~~~PS~IAaA 245 (375)
..+.+++++|.+||+.||++|+|++.++||+.||..|++.++.+. ++.+.|.+++..++.+..+++|+||.||+|
T Consensus 104 ~~~~~~~~~~I~~~E~~iL~~L~f~l~~~~P~~~l~~~~~~~~~~~----~~~~~A~~~l~~s~~~~~~l~~~Ps~IAaA 179 (235)
T 1zp2_A 104 SLKVKLSRSNISEIEFEIISVLDAFLIVHHPYTSLEQAFHDGIINQ----KQLEFAWSIVNDSYASSLCLMAHPHQLAYA 179 (235)
T ss_dssp CCSSCCCHHHHHHHHHHHHHHTTTCCCCCCTHHHHHHHHHTTSSCH----HHHHHHHHHHHHHTTTTGGGTSCHHHHHHH
T ss_pred cchhhccHHHHHHHHHHHHHHCCCcEEecChHHHHHHHHHHcCCCH----HHHHHHHHHHHHHHcCCchhccCHHHHHHH
Confidence 234678999999999999999999999999999999999876542 567889999999999999999999999999
Q ss_pred HHHHHHHHhCCCCCCCcccchhhccCCCHHHHHHHHHHHHHHHHhc
Q 017247 246 TMMHIIDQVEPVNPVDYQNQLLGVLKISKEKVSDCYKLILELANAK 291 (375)
Q Consensus 246 al~~a~~~l~~~~~~~~~~~L~~~~~i~~~~l~~C~~~i~~l~~~~ 291 (375)
||++|....+.. .+.|...+ .|++.++|.+|++.|.+++...
T Consensus 180 ai~lA~~~~~~~-~~~~~~~~---~~~~~~~i~~~~~~i~~ly~~~ 221 (235)
T 1zp2_A 180 ALLISCCNDENT-IPKLLDLI---KSTDAFKVILCVQRIISIYYFE 221 (235)
T ss_dssp HHHHHHTSCTTH-HHHHHHHC---CHHHHHHHHHHHHHHHHHHTSS
T ss_pred HHHHHHHhcCCC-CCCCcchh---hcCCHHHHHHHHHHHHHHHhhC
Confidence 999999765421 11132333 2999999999999999998654
No 13
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=99.97 E-value=3.1e-32 Score=268.45 Aligned_cols=195 Identities=18% Similarity=0.178 Sum_probs=165.7
Q ss_pred chHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhccccccCCchhHHHHHHHHHHhhhhhcccCCCccccee-ee
Q 017247 87 VLVVARSEAVEWVLKVNAHYGFSTLTAILAINYLDRFLRSFHFQIDKPWMIQLLAVTCLSLAAKVEETQVPLLLDLQ-VE 165 (375)
Q Consensus 87 ~~~~~R~~~v~Wi~~v~~~~~l~~~T~~lAV~ylDRfLs~~~v~~~~~~~lqLvavaCL~LAaK~eE~~vp~l~dl~-v~ 165 (375)
....+|..+++||.+|+.+|+|+++|+++|++|||||++...+.+.+ +|++|+|||+||||+||+ +|.+.++. +.
T Consensus 33 ~E~~~R~~~v~wI~ev~~~l~L~~~t~~tAv~~~dRFl~~~sv~~~~---~qlva~acLfLA~K~EE~-p~~l~d~v~v~ 108 (358)
T 2pk2_A 33 KELSYRQQAANLLQDMGQRLNVSQLTINTAIVYMHRFYMIQSFTRFP---GNSVAPAALFLAAKVEEQ-PKKLEHVIKVA 108 (358)
T ss_dssp HHHHHHHHHHHHHHHHHTTTTCCHHHHHHHHHHHHHHTTTSCTTTSC---HHHHHHHHHHHHHHHTTC-CCCHHHHHTTH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccccc---HHHHHHHHHHHHHhhccC-CCCHHHHHHHH
Confidence 44689999999999999999999999999999999999999998888 999999999999999999 77788872 21
Q ss_pred --------------CCCccccHHHHHHHHHHHHHHcCccccCCChHHHHHHHHHHhCCCCcchHHHHHHHHHHHHhhcc-
Q 017247 166 --------------GAKYVFETKAIQRMELLVLSTLEWKMHPVTPISFLDHIIRRLGLKTSLHWEFLKRCERLLLTLVS- 230 (375)
Q Consensus 166 --------------~~~~~f~~~~I~~mE~~IL~~L~w~l~~~Tp~~FL~~fl~~l~~~~~~~~~~l~~~~~ll~~~l~- 230 (375)
+..|.+.+++|.+||+.||++|+|+|+++||+.||..|++.++.+. ++.+.|+++++.++.
T Consensus 109 ~~~~~~~~~~~~~~~~~y~~~~~~Il~~E~~IL~~L~f~L~v~~P~~fL~~~~~~l~~~~----~l~~~A~~ll~~sl~~ 184 (358)
T 2pk2_A 109 HTCLHPQESLPDTRSEAYLQQVQDLVILESIILQTLGFELTIDHPHTHVVKCTQLVRASK----DLAQTSYFMATNSLHL 184 (358)
T ss_dssp HHHHCSSSCCCCTTSHHHHGGGTGGGTHHHHHHHHTTTCCCCCCTTHHHHHHHHHTTCCH----HHHHHHHHHHHHHTTT
T ss_pred HHHhccccccccccchhhhHHHHHHHHHHHHHHHHcCCceeCCCHHHHHHHHHHHcCCCH----HHHHHHHHHHHHHHhc
Confidence 2335445899999999999999999999999999999999987643 566788899988875
Q ss_pred cccccCCCHHHHHHHHHHHHHHHhCCCC-----CCCcccchhhccCCCHHHHHHHHHHHHHHHHhc
Q 017247 231 DSRSVSYLPSVLATATMMHIIDQVEPVN-----PVDYQNQLLGVLKISKEKVSDCYKLILELANAK 291 (375)
Q Consensus 231 d~~~l~~~PS~IAaAal~~a~~~l~~~~-----~~~~~~~L~~~~~i~~~~l~~C~~~i~~l~~~~ 291 (375)
+..++.|+||.||||||++|...++... ...|...+ ..+|+.++|++|++.|.+++...
T Consensus 185 t~l~l~y~Ps~IAaAAI~lA~~~l~~~~p~~~~~~~W~~~~--~~~vt~~~l~~i~~~il~~y~~~ 248 (358)
T 2pk2_A 185 TTFSLQYTPPVVACVCIHLACKWSNWEIPVSTDGKHWWEYV--DATVTLELLDELTHEFLQILEKT 248 (358)
T ss_dssp SCGGGTSCHHHHTTTTTTTHHHHTTCCCCCCSSSCCTTTTS--CSSCCHHHHHHHHHHHHHHTTTC
T ss_pred CcchhccCHHHHHHHHHHHHHHHhCCCCCCCccccchHHHH--hccCCHHHHHHHHHHHHHHHHhC
Confidence 4458999999999999999999876321 13455443 24789999999999999988654
No 14
>1jkw_A Cyclin H; cell cycle, cell division, nuclear protein; 2.60A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1kxu_A
Probab=99.97 E-value=9.2e-30 Score=247.65 Aligned_cols=196 Identities=16% Similarity=0.147 Sum_probs=167.7
Q ss_pred HHHHHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHHhhccccccCCchhHHHHHHHHHHhhhhhcccCCCcccce-eee
Q 017247 89 VVARSEAVEWVLKVNAHYG--FSTLTAILAINYLDRFLRSFHFQIDKPWMIQLLAVTCLSLAAKVEETQVPLLLDL-QVE 165 (375)
Q Consensus 89 ~~~R~~~v~Wi~~v~~~~~--l~~~T~~lAV~ylDRfLs~~~v~~~~~~~lqLvavaCL~LAaK~eE~~vp~l~dl-~v~ 165 (375)
...|...++||.+|+.+|+ +++.|+++|++|||||+....+.+.+ +|++|+|||+||||+||+ ++.+.++ .+.
T Consensus 54 ~~lr~~~~~~I~ev~~~l~~~Lp~~t~~tA~~~~~RF~~~~s~~~~~---~~lva~acLfLA~K~EE~-~~~l~d~v~~~ 129 (323)
T 1jkw_A 54 MTLCKYYEKRLLEFCSVFKPAMPRSVVGTACMYFKRFYLNNSVMEYH---PRIIMLTCAFLACKVDEF-NVSSPQFVGNL 129 (323)
T ss_dssp HHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHHHHHHHGGGSCTTTSC---HHHHHHHHHHHHHHHTTC-CCCHHHHGGGS
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhCChhhcC---HHHHHHHHHHHHHhhhcC-CCCHHHHHHHh
Confidence 4789999999999999999 99999999999999999999998888 999999999999999999 5677887 222
Q ss_pred CCC---ccccHHHHHHHHHHHHHHcCccccCCChHHHHHHHHHHh-----CCCCcchHHHHHHHHHHHHhhcccccccCC
Q 017247 166 GAK---YVFETKAIQRMELLVLSTLEWKMHPVTPISFLDHIIRRL-----GLKTSLHWEFLKRCERLLLTLVSDSRSVSY 237 (375)
Q Consensus 166 ~~~---~~f~~~~I~~mE~~IL~~L~w~l~~~Tp~~FL~~fl~~l-----~~~~~~~~~~l~~~~~ll~~~l~d~~~l~~ 237 (375)
... ..+++++|.+||+.||++|+|+++++||+.||..|+..+ +... ...+...|++++..++.+..++.|
T Consensus 130 ~~~p~~~~~~~~~Il~~E~~iL~~L~f~l~v~~P~~~L~~~l~~l~~~~~~~~~--~~~l~~~A~~~l~~sl~t~~~l~~ 207 (323)
T 1jkw_A 130 RESPLGQEKALEQILEYELLLIQQLNFHLIVHNPYRPFEGFLIDLKTRYPILEN--PEILRKTADDFLNRIALTDAYLLY 207 (323)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSHHHHHHHHHHHHHHCTTCCC--HHHHHHHHHHHHHHHTTSTHHHHS
T ss_pred ccChhhhHHHHHHHHHHHHHHHHHCCCcEEcCChHHHHHHHHHHHHHHhccCCC--HHHHHHHHHHHHHHHHhccHHHcC
Confidence 222 135689999999999999999999999999999999776 2332 124567889999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhCCCCCCCcccchhhc--cCCCHHHHHHHHHHHHHHHHhc
Q 017247 238 LPSVLATATMMHIIDQVEPVNPVDYQNQLLGV--LKISKEKVSDCYKLILELANAK 291 (375)
Q Consensus 238 ~PS~IAaAal~~a~~~l~~~~~~~~~~~L~~~--~~i~~~~l~~C~~~i~~l~~~~ 291 (375)
+||.||+|||++|...++.. ...|...+... .+++.++|.+|++.|..++...
T Consensus 208 ~Ps~IAaAai~lA~~~~~~~-~~~w~~~l~~~~~~~~~~~~l~~~~~~i~~l~~~~ 262 (323)
T 1jkw_A 208 TPSQIALTAILSSASRAGIT-MESYLSESLMLKENRTCLSQLLDIMKSMRNLVKKY 262 (323)
T ss_dssp CHHHHHHHHHHHHHHHHSCC-CTTHHHHHTTSCSSSCCTHHHHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHHHcCCC-hHHHHHHHhccccccccHHHHHHHHHHHHHHHHcc
Confidence 99999999999999988743 24587776554 7889999999999999998764
No 15
>1c9b_A General transcription factor IIB; protein-DNA complex, cyclin-like fold, helix-turn-helix, transcription/DNA complex; 2.65A {Homo sapiens} SCOP: a.74.1.2 a.74.1.2 PDB: 1tfb_A 2phg_A 1vol_A*
Probab=99.94 E-value=3.9e-26 Score=208.29 Aligned_cols=187 Identities=15% Similarity=0.148 Sum_probs=165.8
Q ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhccccccCCchhHHHHHHHHHHhhhhhcccCCCcccceeeeCCCc
Q 017247 90 VARSEAVEWVLKVNAHYGFSTLTAILAINYLDRFLRSFHFQIDKPWMIQLLAVTCLSLAAKVEETQVPLLLDLQVEGAKY 169 (375)
Q Consensus 90 ~~R~~~v~Wi~~v~~~~~l~~~T~~lAV~ylDRfLs~~~v~~~~~~~lqLvavaCL~LAaK~eE~~vp~l~dl~v~~~~~ 169 (375)
+....+.++|.+++..++++..|..+|+.|++||+....+...+ .+++|+|||+||||+||. ++.+.|+. ....
T Consensus 3 r~l~~a~~~I~~~~~~L~L~~~v~~~A~~~~~r~~~~~~~~~~~---~~~v~aaclylAcK~ee~-p~~l~di~-~~~~- 76 (207)
T 1c9b_A 3 RAMMNAFKEITTMADRINLPRNIVDRTNNLFKQVYEQKSLKGRA---NDAIASACLYIACRQEGV-PRTFKEIC-AVSR- 76 (207)
T ss_dssp GGHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTCSTTSC---HHHHHHHHHHHHHHHTTC-CCCHHHHH-HTSS-
T ss_pred hHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcCCCC---HHHHHHHHHHHHHHhcCC-CCCHHHHH-HHHC-
Confidence 34678999999999999999999999999999999999888888 999999999999999998 77888882 1122
Q ss_pred cccHHHHHHHHHHHHHHcCccccCCChHHHHHHHHHHhCCCCcchHHHHHHHHHHHHhhcccccccCCCHHHHHHHHHHH
Q 017247 170 VFETKAIQRMELLVLSTLEWKMHPVTPISFLDHIIRRLGLKTSLHWEFLKRCERLLLTLVSDSRSVSYLPSVLATATMMH 249 (375)
Q Consensus 170 ~f~~~~I~~mE~~IL~~L~w~l~~~Tp~~FL~~fl~~l~~~~~~~~~~l~~~~~ll~~~l~d~~~l~~~PS~IAaAal~~ 249 (375)
++.++|.++|+.|++.|+|++.+++|+.|+..|...+++++ +..+.|.+++..++.+.-+.+|+|+.||+||||+
T Consensus 77 -~~~~~i~~~~~~ll~~L~~~l~~~~p~~~l~r~~~~l~l~~----~~~~~A~~i~~~~~~~~l~~g~~P~~IAaAaiyl 151 (207)
T 1c9b_A 77 -ISKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLCLPK----QVQMAATHIARKAVELDLVPGRSPISVAAAAIYM 151 (207)
T ss_dssp -SCHHHHHHHHHHHHHHTTCCCCCCCTHHHHHHHHHHTTCCH----HHHHHHHHHHHHHHHTTCSTTCCHHHHHHHHHHH
T ss_pred -CCHHHHHHHHHHHHHHHCCCcCcCCHHHHHHHHHHHCCCCH----HHHHHHHHHHHHHHHcCccCCCChHHHHHHHHHH
Confidence 58999999999999999999999999999999999999864 4567788888888888888999999999999999
Q ss_pred HHHHhCCCCCCCcccchhhccCCCHHHHHHHHHHHHHHHHh
Q 017247 250 IIDQVEPVNPVDYQNQLLGVLKISKEKVSDCYKLILELANA 290 (375)
Q Consensus 250 a~~~l~~~~~~~~~~~L~~~~~i~~~~l~~C~~~i~~l~~~ 290 (375)
|.+..+. ..+...+..++|+++.+|++|++.|.+....
T Consensus 152 A~~~~~~---~~~~~~i~~~~~v~~~tI~~~~~~l~~~l~~ 189 (207)
T 1c9b_A 152 ASQASAE---KRTQKEIGDIAGVADVTIRQSYRLIYPRAPD 189 (207)
T ss_dssp HHHTSSS---CCCHHHHHHHHTCCHHHHHHHHHHHGGGHHH
T ss_pred HHHHHCC---CCCHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence 9987753 3477789999999999999999999886543
No 16
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B*
Probab=99.89 E-value=2.8e-22 Score=181.66 Aligned_cols=185 Identities=16% Similarity=0.184 Sum_probs=165.3
Q ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhccccccCCchhHHHHHHHHHHhhhhhcccCCCcccce-eeeCCC
Q 017247 90 VARSEAVEWVLKVNAHYGFSTLTAILAINYLDRFLRSFHFQIDKPWMIQLLAVTCLSLAAKVEETQVPLLLDL-QVEGAK 168 (375)
Q Consensus 90 ~~R~~~v~Wi~~v~~~~~l~~~T~~lAV~ylDRfLs~~~v~~~~~~~lqLvavaCL~LAaK~eE~~vp~l~dl-~v~~~~ 168 (375)
+....+.++|.+++..+++++.+...|..|++||+....+...+ .+.+|+|||++|||.|+. +..+.|+ .+ .+
T Consensus 7 r~l~~a~~~I~~~~~~L~L~~~v~~~A~~l~~~~~~~~~~~gr~---~~~vaaAclylAcr~~~~-p~~l~di~~~--~~ 80 (200)
T 1ais_B 7 RNLAFALSELDRITAQLKLPRHVEEEAARLYREAVRKGLIRGRS---IESVMAACVYAACRLLKV-PRTLDEIADI--AR 80 (200)
T ss_dssp -CHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTTTTTTCC---HHHHHHHHHHHHHHHHTC-CCCHHHHHHH--TT
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCCcCCCC---HHHHHHHHHHHHHHHcCC-CCCHHHHHHH--HC
Confidence 45678999999999999999999999999999999998887777 999999999999999996 6788887 22 22
Q ss_pred ccccHHHHHHHHHHHHHHcCccccC--CChHHHHHHHHHHhCCCCcchHHHHHHHHHHHHhhcccccccCCCHHHHHHHH
Q 017247 169 YVFETKAIQRMELLVLSTLEWKMHP--VTPISFLDHIIRRLGLKTSLHWEFLKRCERLLLTLVSDSRSVSYLPSVLATAT 246 (375)
Q Consensus 169 ~~f~~~~I~~mE~~IL~~L~w~l~~--~Tp~~FL~~fl~~l~~~~~~~~~~l~~~~~ll~~~l~d~~~l~~~PS~IAaAa 246 (375)
++.++|.++++.|++.|+|++.+ ++|..|+..|...+++++ +..+.|++++..+..+..+.+++|+.|||||
T Consensus 81 --v~~~~i~~~~~~l~~~L~~~~~~~~~~p~~~i~r~~~~L~l~~----~v~~~A~~i~~~~~~~~~~~gr~P~~iAaAa 154 (200)
T 1ais_B 81 --VDKKEIGRSYRFIARNLNLTPKKLFVKPTDYVNKFADELGLSE----KVRRRAIEILDEAYKRGLTSGKSPAGLVAAA 154 (200)
T ss_dssp --SCHHHHHHHHHHHHHHTTCCTTTTCCCGGGGHHHHHHHHTCCH----HHHHHHHHHHHHHHHTTCCTTSCHHHHHHHH
T ss_pred --CCHHHHHHHHHHHHHHhcccCCcCCCCHHHHHHHHHHHcCCCH----HHHHHHHHHHHHHHHcCcccCCCHHHHHHHH
Confidence 47999999999999999999999 999999999999999875 5667888999988888889999999999999
Q ss_pred HHHHHHHhCCCCCCCcccchhhccCCCHHHHHHHHHHHHHHHH
Q 017247 247 MMHIIDQVEPVNPVDYQNQLLGVLKISKEKVSDCYKLILELAN 289 (375)
Q Consensus 247 l~~a~~~l~~~~~~~~~~~L~~~~~i~~~~l~~C~~~i~~l~~ 289 (375)
||+|.+..+. ..|...+..++|+++.+|.+|++.|.+.+.
T Consensus 155 ly~A~~~~~~---~~t~~ei~~~~~vs~~ti~~~~~~l~~~l~ 194 (200)
T 1ais_B 155 LYIASLLEGE---KRTQREVAEVARVTEVTVRNRYKELVEKLK 194 (200)
T ss_dssp HHHHHHHTTC---CCCHHHHHHHHTCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhCC---CCCHHHHHHHhCCCHHHHHHHHHHHHHHcC
Confidence 9999988753 347889999999999999999999998763
No 17
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=99.74 E-value=7.5e-19 Score=172.21 Aligned_cols=183 Identities=10% Similarity=0.093 Sum_probs=80.1
Q ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhccccccCCchhHHHHHHHHHHhhhhhcccCCCcccce-eeeCCCc
Q 017247 91 ARSEAVEWVLKVNAHYGFSTLTAILAINYLDRFLRSFHFQIDKPWMIQLLAVTCLSLAAKVEETQVPLLLDL-QVEGAKY 169 (375)
Q Consensus 91 ~R~~~v~Wi~~v~~~~~l~~~T~~lAV~ylDRfLs~~~v~~~~~~~lqLvavaCL~LAaK~eE~~vp~l~dl-~v~~~~~ 169 (375)
....+...|..++..++++..+...|..||.|++....+...+ .+.+++|||+||||.|++ +..+.|+ .+ ..
T Consensus 125 ~l~~a~~~I~~~~~~L~Lp~~v~d~A~~lyk~~~~~~~~kgr~---~~~vaaAclyiAcR~e~~-prtl~ei~~~--~~- 197 (345)
T 3k7a_M 125 EVQAAFAKITMLCDAAELPKIVKDCAKEAYKLCHDEKTLKGKS---MESIMAASILIGCRRAEV-ARTFKEIQSL--IH- 197 (345)
T ss_dssp THHHHHHHHHHHHHHTTCCHHHHTHHHHHHHHHSSSCSSCCCC---SHHHHTTTTTTTSBTTBS-SCCHHHHHHS--SS-
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcccCCc---HHHHHHHHHHHHHHHcCC-CccHHHHHHH--HC-
Confidence 3568889999999999999999999999999999998888777 999999999999999998 6788887 22 22
Q ss_pred cccHHHHHHHHHHHHHHcC------------ccccCCChHHHHHHHHHHhCCCCcchHHHHHHHHHHHHhhcccccccCC
Q 017247 170 VFETKAIQRMELLVLSTLE------------WKMHPVTPISFLDHIIRRLGLKTSLHWEFLKRCERLLLTLVSDSRSVSY 237 (375)
Q Consensus 170 ~f~~~~I~~mE~~IL~~L~------------w~l~~~Tp~~FL~~fl~~l~~~~~~~~~~l~~~~~ll~~~l~d~~~l~~ 237 (375)
++.++|.++++.|++.|+ +.+.+++|..|+..|...|+++. ++.+.|++++..+..+.-+.++
T Consensus 198 -v~~keIgr~~~~l~~~L~~~~~~~~~~~~~~~~~~~~p~~~i~Rf~~~L~l~~----~v~~~A~~i~~~~~~~~l~~Gr 272 (345)
T 3k7a_M 198 -VKTKEFGKTLNIMKNILRGKSEDGFLKIDTDNMSGAQNLTYIPRFCSHLGLPM----QVTTSAEYTAKKCKEIKEIAGK 272 (345)
T ss_dssp -CCSHHHHHHHHHHHHHHTCC-----------------------------------------------------------
T ss_pred -CCHHHHHHHHHHHHHHHhhhhccccccccccccCCCCHHHHHHHHHHHcCCCH----HHHHHHHHHHHHHHHhchhcCC
Confidence 478999999999999999 99999999999999999999874 4567888999888888888999
Q ss_pred CHHHHHHHHHHHHHHHhCCCCCCCcccchhhccCCCHHHHHHHHHHHHHHH
Q 017247 238 LPSVLATATMMHIIDQVEPVNPVDYQNQLLGVLKISKEKVSDCYKLILELA 288 (375)
Q Consensus 238 ~PS~IAaAal~~a~~~l~~~~~~~~~~~L~~~~~i~~~~l~~C~~~i~~l~ 288 (375)
+|+.|||||||+|....+. .-++..+..++|+++..|+.+|+.|.+..
T Consensus 273 ~P~~IAaAaIylAa~~~~~---~~t~~eIa~~~~Vse~TIr~~ykel~~~~ 320 (345)
T 3k7a_M 273 SPITIAVVSIYLNILLFQI---PITAAKVGQTLQVTEGTIKSGYKILYEHR 320 (345)
T ss_dssp ---------------------------------------------------
T ss_pred CHHHHHHHHHHHHHHHHCC---CCCHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 9999999999999987653 23678899999999999999999998865
No 18
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=99.44 E-value=9.7e-14 Score=135.76 Aligned_cols=183 Identities=10% Similarity=0.096 Sum_probs=75.8
Q ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhccccccCCchhHHHHHHHHHHhhhhhcccCCCcccce-eeeCCCcc
Q 017247 92 RSEAVEWVLKVNAHYGFSTLTAILAINYLDRFLRSFHFQIDKPWMIQLLAVTCLSLAAKVEETQVPLLLDL-QVEGAKYV 170 (375)
Q Consensus 92 R~~~v~Wi~~v~~~~~l~~~T~~lAV~ylDRfLs~~~v~~~~~~~lqLvavaCL~LAaK~eE~~vp~l~dl-~v~~~~~~ 170 (375)
-..+...|.+++..++++..+.-.|..++.+++....+...+ ...+++|||++|||.++. +..+.|+ .+. .
T Consensus 126 L~~a~~~I~~~~~~L~Lp~~v~d~A~~lyk~a~~~~~~rGrs---~e~vaAAclYiACR~~~~-prtl~eI~~~~----~ 197 (345)
T 4bbr_M 126 VQAAFAKITMLCDAAELPKIVKDCAKEAYKLCHDEKTLKGKS---MESIMAASILIGCRRAEV-ARTFKEIQSLI----H 197 (345)
T ss_dssp TTHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTTTTCC---HHHHHHHHHHHHHHHTCC-BCCHHHHHHHH----T
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccCCC---HHHHHHHHHHHHHHhcCC-CccHHHHHHHh----C
Confidence 456778899999999999999999999999999988787777 999999999999999987 5677777 221 1
Q ss_pred ccHHHHHHHHHHHHHHcCcc------------ccCCChHHHHHHHHHHhCCCCcchHHHHHHHHHHHHhhcccccccCCC
Q 017247 171 FETKAIQRMELLVLSTLEWK------------MHPVTPISFLDHIIRRLGLKTSLHWEFLKRCERLLLTLVSDSRSVSYL 238 (375)
Q Consensus 171 f~~~~I~~mE~~IL~~L~w~------------l~~~Tp~~FL~~fl~~l~~~~~~~~~~l~~~~~ll~~~l~d~~~l~~~ 238 (375)
.++++|.+..+.|.+.|+.. +.+.+|.+|+..|...|+++. ++...|..++..+..+.-..+.+
T Consensus 198 v~~keigr~~k~l~~~L~l~~~~~~~~~~~~~~~~~~p~~~i~Rf~s~L~l~~----~v~~~A~~i~~~~~~~~i~~GR~ 273 (345)
T 4bbr_M 198 VKTKEFGKTLNIMKNILRGKSEDGFLKIDTDNMSGAQNLTYIPRFCSHLGLPM----QVTTSAEYTAKKCKEIKEIAGKS 273 (345)
T ss_dssp CCTTHHHHHHHHHHHCC---------------------------------------------------------------
T ss_pred CCHHHHHHHHHHHHHHhCccccccccccccccCCCCCHHHHHHHHHHHcCCcH----HHHHHHHHHHHHHHhcccccCCC
Confidence 36789999999999999974 778899999999999999865 45566777777777766677999
Q ss_pred HHHHHHHHHHHHHHHhCCCCCCCcccchhhccCCCHHHHHHHHHHHHHHHH
Q 017247 239 PSVLATATMMHIIDQVEPVNPVDYQNQLLGVLKISKEKVSDCYKLILELAN 289 (375)
Q Consensus 239 PS~IAaAal~~a~~~l~~~~~~~~~~~L~~~~~i~~~~l~~C~~~i~~l~~ 289 (375)
|+.|||||||+|....+.. --+..+..+.|+++..|+..|+.|.+...
T Consensus 274 P~~IAAAaIylAa~l~g~~---~t~~eIa~v~~Vse~TIr~rykel~~~~~ 321 (345)
T 4bbr_M 274 PITIAVVSIYLNILLFQIP---ITAAKVGQTLQVTEGTIKSGYKILYEHRD 321 (345)
T ss_dssp ---------------------------------------------------
T ss_pred hHHHHHHHHHHHHHHhCCC---CCHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 9999999999999876532 24567889999999999999999987654
No 19
>2pmi_B PHO85 cyclin PHO80, aminoglycoside anti; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_B*
Probab=98.16 E-value=7.1e-06 Score=77.55 Aligned_cols=106 Identities=10% Similarity=0.180 Sum_probs=80.8
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhccc-cccCCchhHHHHHHHHHHhhhhhcccCCCcccce-eeeCCCcccc
Q 017247 95 AVEWVLKVNAHYGFSTLTAILAINYLDRFLRSFH-FQIDKPWMIQLLAVTCLSLAAKVEETQVPLLLDL-QVEGAKYVFE 172 (375)
Q Consensus 95 ~v~Wi~~v~~~~~l~~~T~~lAV~ylDRfLs~~~-v~~~~~~~lqLvavaCL~LAaK~eE~~vp~l~dl-~v~~~~~~f~ 172 (375)
+-+|+.++..+-.+++.++..|+.|+||+..... +.. .++..+-+-++||.+|+|+-+.....-... .+ + .++
T Consensus 77 I~~Yl~RI~k~t~ls~~~ll~ALvYLdRL~~~~p~~~l-~~~nvHRLlLtALmlAsK~ldD~~ysN~~wAkV--g--Gis 151 (293)
T 2pmi_B 77 IFNYFIRLTKFSSLEHCVLMTSLYYIDLLQTVYPDFTL-NSLTAHRFLLTATTVATKGLCDSFSTNAHYAKV--G--GVR 151 (293)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHCTTCCC-STTTHHHHHHHHHHHHHHHHCSSCCCHHHHHHH--H--TSC
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhCCCCcc-CCchHHHHHHHHHHHHHHhccccccChhHhhhc--c--CcC
Confidence 5568889999999999999999999999988543 222 244488889999999999976544443443 23 2 358
Q ss_pred HHHHHHHHHHHHHHcCccccCCChHHHHHHHHHH
Q 017247 173 TKAIQRMELLVLSTLEWKMHPVTPISFLDHIIRR 206 (375)
Q Consensus 173 ~~~I~~mE~~IL~~L~w~l~~~Tp~~FL~~fl~~ 206 (375)
.+++.+||+..|..|+|++.+. +-.|..+++..
T Consensus 152 l~ELN~LE~eFL~lLdf~L~V~-~ee~~~cy~E~ 184 (293)
T 2pmi_B 152 CHELNILENDFLKRVNYRIIPR-DHNITLCSIEQ 184 (293)
T ss_dssp HHHHHHHHHHHHHTTTTCCSCC-TTHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHcCCceeeC-HHHHHHHHHHH
Confidence 9999999999999999999655 55666555544
No 20
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B*
Probab=96.46 E-value=0.013 Score=51.94 Aligned_cols=87 Identities=15% Similarity=0.176 Sum_probs=70.7
Q ss_pred ChHHHHHHHHHHhCCCCcchHHHHHHHHHHHHhhcccccccCCCHHHHHHHHHHHHHHHhCCCCCCCcccchhhccCCCH
Q 017247 195 TPISFLDHIIRRLGLKTSLHWEFLKRCERLLLTLVSDSRSVSYLPSVLATATMMHIIDQVEPVNPVDYQNQLLGVLKISK 274 (375)
Q Consensus 195 Tp~~FL~~fl~~l~~~~~~~~~~l~~~~~ll~~~l~d~~~l~~~PS~IAaAal~~a~~~l~~~~~~~~~~~L~~~~~i~~ 274 (375)
..+.++..+...+++++ .....|..+...+.....+.+.+|-.+|+||+|+|.+..+. +--...+..+++++.
T Consensus 11 ~a~~~I~~~~~~L~L~~----~v~~~A~~l~~~~~~~~~~~gr~~~~vaaAclylAcr~~~~---p~~l~di~~~~~v~~ 83 (200)
T 1ais_B 11 FALSELDRITAQLKLPR----HVEEEAARLYREAVRKGLIRGRSIESVMAACVYAACRLLKV---PRTLDEIADIARVDK 83 (200)
T ss_dssp HHHHHHHHHHHHHTCCH----HHHHHHHHHHHHHHTTTTTTTCCHHHHHHHHHHHHHHHHTC---CCCHHHHHHHTTSCH
T ss_pred HHHHHHHHHHHHcCCCH----HHHHHHHHHHHHHHhCCCcCCCCHHHHHHHHHHHHHHHcCC---CCCHHHHHHHHCCCH
Confidence 35678899999999874 56677777777776666677899999999999999998762 234567778899999
Q ss_pred HHHHHHHHHHHHHH
Q 017247 275 EKVSDCYKLILELA 288 (375)
Q Consensus 275 ~~l~~C~~~i~~l~ 288 (375)
.+|..+++.|.+.+
T Consensus 84 ~~i~~~~~~l~~~L 97 (200)
T 1ais_B 84 KEIGRSYRFIARNL 97 (200)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999998865
No 21
>1c9b_A General transcription factor IIB; protein-DNA complex, cyclin-like fold, helix-turn-helix, transcription/DNA complex; 2.65A {Homo sapiens} SCOP: a.74.1.2 a.74.1.2 PDB: 1tfb_A 2phg_A 1vol_A*
Probab=95.93 E-value=0.034 Score=49.45 Aligned_cols=87 Identities=18% Similarity=0.286 Sum_probs=69.1
Q ss_pred hHHHHHHHHHHhCCCCcchHHHHHHHHHHHHhhcccccccCCCHHHHHHHHHHHHHHHhCCCCCCCcccchhhccCCCHH
Q 017247 196 PISFLDHIIRRLGLKTSLHWEFLKRCERLLLTLVSDSRSVSYLPSVLATATMMHIIDQVEPVNPVDYQNQLLGVLKISKE 275 (375)
Q Consensus 196 p~~FL~~fl~~l~~~~~~~~~~l~~~~~ll~~~l~d~~~l~~~PS~IAaAal~~a~~~l~~~~~~~~~~~L~~~~~i~~~ 275 (375)
.+.++..+...+++++ ..+..|..+....+....+.++.|-.||+||+|+|.+..+. +.-...+..+++++..
T Consensus 8 a~~~I~~~~~~L~L~~----~v~~~A~~~~~r~~~~~~~~~~~~~~v~aaclylAcK~ee~---p~~l~di~~~~~~~~~ 80 (207)
T 1c9b_A 8 AFKEITTMADRINLPR----NIVDRTNNLFKQVYEQKSLKGRANDAIASACLYIACRQEGV---PRTFKEICAVSRISKK 80 (207)
T ss_dssp HHHHHHHHHHHTTCCH----HHHHHHHHHHHHHHHHTCSTTSCHHHHHHHHHHHHHHHTTC---CCCHHHHHHTSSSCHH
T ss_pred HHHHHHHHHHHcCCCH----HHHHHHHHHHHHHHhcCCcCCCCHHHHHHHHHHHHHHhcCC---CCCHHHHHHHHCCCHH
Confidence 4678888888898875 56677777777776667788999999999999999997653 2245677788999999
Q ss_pred HHHHHHHHHHHHHH
Q 017247 276 KVSDCYKLILELAN 289 (375)
Q Consensus 276 ~l~~C~~~i~~l~~ 289 (375)
+|.+++..|.+.+.
T Consensus 81 ~i~~~~~~ll~~L~ 94 (207)
T 1c9b_A 81 EIGRCFKLILKALE 94 (207)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHC
Confidence 99999998887653
No 22
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=93.54 E-value=0.23 Score=47.94 Aligned_cols=88 Identities=3% Similarity=0.033 Sum_probs=66.8
Q ss_pred ChHHHHHHHHHHhCCCCcchHHHHHHHHHHHHhhcccccccCCCHHHHHHHHHHHHHHHhCCCCCCCcccchhhccCCCH
Q 017247 195 TPISFLDHIIRRLGLKTSLHWEFLKRCERLLLTLVSDSRSVSYLPSVLATATMMHIIDQVEPVNPVDYQNQLLGVLKISK 274 (375)
Q Consensus 195 Tp~~FL~~fl~~l~~~~~~~~~~l~~~~~ll~~~l~d~~~l~~~PS~IAaAal~~a~~~l~~~~~~~~~~~L~~~~~i~~ 274 (375)
..+..|..+...+++++ .+...|..+...+.....+-+.+...|||||+|+|.+..+. +-....+..++++++
T Consensus 128 ~a~~~I~~~~~~L~Lp~----~v~d~A~~lyk~a~~~~~~rGrs~e~vaAAclYiACR~~~~---prtl~eI~~~~~v~~ 200 (345)
T 4bbr_M 128 AAFAKITMLCDAAELPK----IVKDCAKEAYKLCHDEKTLKGKSMESIMAASILIGCRRAEV---ARTFKEIQSLIHVKT 200 (345)
T ss_dssp HHHHHHHHHHHHTTCCH----HHHHHHHHHHHHHTTCTTTTTCCHHHHHHHHHHHHHHHTCC---BCCHHHHHHHHTCCT
T ss_pred HHHHHHHHHHHHcCCCH----HHHHHHHHHHHHHHhcCCccCCCHHHHHHHHHHHHHHhcCC---CccHHHHHHHhCCCH
Confidence 34566777888888875 45677777776665555566888999999999999988652 334566778899999
Q ss_pred HHHHHHHHHHHHHHH
Q 017247 275 EKVSDCYKLILELAN 289 (375)
Q Consensus 275 ~~l~~C~~~i~~l~~ 289 (375)
.+|..+++.|.+.+.
T Consensus 201 keigr~~k~l~~~L~ 215 (345)
T 4bbr_M 201 KEFGKTLNIMKNILR 215 (345)
T ss_dssp THHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHHHhC
Confidence 999999999987553
No 23
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=91.59 E-value=0.1 Score=50.36 Aligned_cols=86 Identities=3% Similarity=0.031 Sum_probs=67.5
Q ss_pred HHHHHHHHHHhCCCCcchHHHHHHHHHHHHhhcccccccCCCHHHHHHHHHHHHHHHhCCCCCCCcccchhhccCCCHHH
Q 017247 197 ISFLDHIIRRLGLKTSLHWEFLKRCERLLLTLVSDSRSVSYLPSVLATATMMHIIDQVEPVNPVDYQNQLLGVLKISKEK 276 (375)
Q Consensus 197 ~~FL~~fl~~l~~~~~~~~~~l~~~~~ll~~~l~d~~~l~~~PS~IAaAal~~a~~~l~~~~~~~~~~~L~~~~~i~~~~ 276 (375)
+.+|..+...+++++ .++..|..+...+.....+-+.+.-.|||||||+|.+..+ .+--...+..+++++..+
T Consensus 130 ~~~I~~~~~~L~Lp~----~v~d~A~~lyk~~~~~~~~kgr~~~~vaaAclyiAcR~e~---~prtl~ei~~~~~v~~ke 202 (345)
T 3k7a_M 130 FAKITMLCDAAELPK----IVKDCAKEAYKLCHDEKTLKGKSMESIMAASILIGCRRAE---VARTFKEIQSLIHVKTKE 202 (345)
T ss_dssp HHHHHHHHHHTTCCH----HHHTHHHHHHHHHSSSCSSCCCCSHHHHTTTTTTTSBTTB---SSCCHHHHHHSSSCCSHH
T ss_pred HHHHHHHHHHcCCCH----HHHHHHHHHHHHHHhcCcccCCcHHHHHHHHHHHHHHHcC---CCccHHHHHHHHCCCHHH
Confidence 567788888888875 4567777777776666666788999999999999998654 233456677889999999
Q ss_pred HHHHHHHHHHHHH
Q 017247 277 VSDCYKLILELAN 289 (375)
Q Consensus 277 l~~C~~~i~~l~~ 289 (375)
|.+|++.|.+.+.
T Consensus 203 Igr~~~~l~~~L~ 215 (345)
T 3k7a_M 203 FGKTLNIMKNILR 215 (345)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHh
Confidence 9999999998775
No 24
>1zp2_A RNA polymerase II holoenzyme cyclin-like subunit; cyclin repeat domains, transcription-cell cycle complex; 3.00A {Schizosaccharomyces pombe}
Probab=90.99 E-value=0.88 Score=41.00 Aligned_cols=86 Identities=16% Similarity=0.165 Sum_probs=62.1
Q ss_pred HHHHHHHHHHhCCCCcchHHHHHHHHHHHHhhcccccccC-CCHHHHHHHHHHHHHHHhCCCCCCCcccchhhcc-----
Q 017247 197 ISFLDHIIRRLGLKTSLHWEFLKRCERLLLTLVSDSRSVS-YLPSVLATATMMHIIDQVEPVNPVDYQNQLLGVL----- 270 (375)
Q Consensus 197 ~~FL~~fl~~l~~~~~~~~~~l~~~~~ll~~~l~d~~~l~-~~PS~IAaAal~~a~~~l~~~~~~~~~~~L~~~~----- 270 (375)
.++|..+...+++.. ..+..|..++...+....+.+ +.+-.||+|||++|.+.-+. .. -...+..++
T Consensus 32 ~~~i~~v~~~l~L~~----~t~~~A~~~~~Rf~~~~~~~~~~~~~lv~~acL~lA~K~Ee~--~~-~l~d~~~~~~~~~~ 104 (235)
T 1zp2_A 32 WKVVQTFGDRLRLRQ----RVLATAIVLLRRYMLKKNEEKGFSLEALVATCIYLSCKVEEC--PV-HIRTICNEANDLWS 104 (235)
T ss_dssp HHHHHHHHHHTTCCH----HHHHHHHHHHHHHHHHCCSCCCCCHHHHHHHHHHHHHHHTTC--CC-CHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHcCCCH----HHHHHHHHHHHHHHHhcccccccCHHHHHHHHHHHHhccccC--cc-cHHHHHHHHHHHcc
Confidence 456777777777764 556667777777777777888 99999999999999987652 12 122333332
Q ss_pred ---CCCHHHHHHHHHHHHHHHH
Q 017247 271 ---KISKEKVSDCYKLILELAN 289 (375)
Q Consensus 271 ---~i~~~~l~~C~~~i~~l~~ 289 (375)
.++.++|..+-..|.+.+.
T Consensus 105 ~~~~~~~~~I~~~E~~iL~~L~ 126 (235)
T 1zp2_A 105 LKVKLSRSNISEIEFEIISVLD 126 (235)
T ss_dssp CSSCCCHHHHHHHHHHHHHHTT
T ss_pred chhhccHHHHHHHHHHHHHHCC
Confidence 5789999999888887653
No 25
>2i53_A Cyclin K; cell cycle, transcription, cyclin BOX, CDK9, positive transcription elongation factor, P-TEFB; 1.50A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=86.92 E-value=2.2 Score=38.72 Aligned_cols=87 Identities=10% Similarity=0.069 Sum_probs=60.0
Q ss_pred HHHHHHHHHcCCCH----HHHHHHHHHHHHHhhccccccCCchhHHHHHHHHHHhhhhhcccCCCcccc------e-eee
Q 017247 97 EWVLKVNAHYGFST----LTAILAINYLDRFLRSFHFQIDKPWMIQLLAVTCLSLAAKVEETQVPLLLD------L-QVE 165 (375)
Q Consensus 97 ~Wi~~v~~~~~l~~----~T~~lAV~ylDRfLs~~~v~~~~~~~lqLvavaCL~LAaK~eE~~vp~l~d------l-~v~ 165 (375)
+++......++.+. .+..+|..+++.-+.....-... ...+|+||+++|+++....+|.... . ..-
T Consensus 153 ~fl~~~~~~l~~~~~~~~~~~~~A~~l~~~s~~~~~~l~~~---Ps~IAaAai~lA~~~~~~~~~~~~~~~~~~~W~~~~ 229 (258)
T 2i53_A 153 QFLLKYAKQLKGDKNKIQKLVQMAWTFVNDSLCTTLSLQWE---PEIIAVAVMYLAGRLCKFEIQEWTSKPMYRRWWEQF 229 (258)
T ss_dssp HHHHHHHHTBCSCHHHHHHHHHHHHHHHHHHTTTTGGGTSC---HHHHHHHHHHHHHHHHTCCGGGGBSSCCSSCGGGGT
T ss_pred HHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHcCCchhccC---hHHHHHHHHHHHHHHhCCCCCccccCCCcccHHHHh
Confidence 56777777888876 57788888888877655555566 7899999999999996654332111 0 000
Q ss_pred CCCccccHHHHHHHHHHHHHHcC
Q 017247 166 GAKYVFETKAIQRMELLVLSTLE 188 (375)
Q Consensus 166 ~~~~~f~~~~I~~mE~~IL~~L~ 188 (375)
.. .++.++|...-..|+....
T Consensus 230 ~~--~~~~~~l~~~~~~il~ly~ 250 (258)
T 2i53_A 230 VQ--DVPVDVLEDICHQILDLYS 250 (258)
T ss_dssp SS--SCCHHHHHHHHHHHHTTTS
T ss_pred cc--CCCHHHHHHHHHHHHHHHh
Confidence 11 3488999998888887544
No 26
>2ivx_A Cyclin-T2; transcription regulation, cell division, phosphorylation, NU protein, cell cycle, transcription; 1.8A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_A 3mi9_B* 3mia_B* 3tnh_B* 3tni_B* 3blh_B* 3blq_B* 3blr_B* 3lq5_B* 3my1_B* 3tn8_B*
Probab=86.07 E-value=4 Score=37.05 Aligned_cols=86 Identities=17% Similarity=0.129 Sum_probs=56.9
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHhh-ccccccCCchhHHHHHHHHHHhhhhhcccCCCcccc---e-eeeCCCccc
Q 017247 97 EWVLKVNAHYGFSTLTAILAINYLDRFLR-SFHFQIDKPWMIQLLAVTCLSLAAKVEETQVPLLLD---L-QVEGAKYVF 171 (375)
Q Consensus 97 ~Wi~~v~~~~~l~~~T~~lAV~ylDRfLs-~~~v~~~~~~~lqLvavaCL~LAaK~eE~~vp~l~d---l-~v~~~~~~f 171 (375)
+++......++.+.++..+|..++..-+. ....-... ...+|+||+++|+++....+|...+ . ..-..+ +
T Consensus 148 ~fl~~~~~~l~~~~~~~~~A~~~~~~sl~~~~~~l~~~---Ps~IAaAai~lA~~~~~~~~p~~~~~~~W~~~~~~~--~ 222 (257)
T 2ivx_A 148 TDVVKCTQLVRASKDLAQTSYFMATNSLHLTTFCLQYK---PTVIACVCIHLACKWSNWEIPVSTDGKHWWEYVDPT--V 222 (257)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCCGGGTSC---HHHHHHHHHHHHHHHHTCCCCCCTTCCCGGGGTCSS--C
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHhhhhcccHHHcCC---HHHHHHHHHHHHHHHhCCCCCCCCCCchHHHHhCCC--C
Confidence 45566667788888888889888755442 22234455 7899999999999997654443211 1 000122 4
Q ss_pred cHHHHHHHHHHHHHHc
Q 017247 172 ETKAIQRMELLVLSTL 187 (375)
Q Consensus 172 ~~~~I~~mE~~IL~~L 187 (375)
+.++|...-..|+..+
T Consensus 223 ~~~~l~~~~~~i~~~~ 238 (257)
T 2ivx_A 223 TLELLDELTHEFLQIL 238 (257)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHH
Confidence 7888988888888754
No 27
>2b9r_A Human cyclin B1; cell cycle; 2.90A {Homo sapiens} PDB: 2jgz_B*
Probab=84.39 E-value=4.5 Score=37.08 Aligned_cols=85 Identities=11% Similarity=0.070 Sum_probs=60.1
Q ss_pred HHHHHHHHHhCCCCcchHHHHHHHHHHHHhhcccccccCCCHHHHHHHHHHHHHHHhCCCCCCCcccchhhcc--CCCHH
Q 017247 198 SFLDHIIRRLGLKTSLHWEFLKRCERLLLTLVSDSRSVSYLPSVLATATMMHIIDQVEPVNPVDYQNQLLGVL--KISKE 275 (375)
Q Consensus 198 ~FL~~fl~~l~~~~~~~~~~l~~~~~ll~~~l~d~~~l~~~PS~IAaAal~~a~~~l~~~~~~~~~~~L~~~~--~i~~~ 275 (375)
+|+......+++.. +.+..|..+++..+....+....+-.+|+||+++|.+.-+.. +.-...+..++ .++.+
T Consensus 43 ~wl~~v~~~~~l~~----~tl~lAv~~lDRfl~~~~v~~~~lqlv~~acL~iA~K~eE~~--~p~~~d~~~~~~~~~~~~ 116 (269)
T 2b9r_A 43 DWLVQVQMKFRLLQ----ETMYMTVSIIDRFMQNNSVPKKMLQLVGVTAMFIASKYEEMY--PPEIGDFAFVTDNTYTKH 116 (269)
T ss_dssp HHHHHHHHHTTCCH----HHHHHHHHHHHHHHTTSCCCGGGHHHHHHHHHHHHHHHHCSS--CCCHHHHHHHTCSSSCHH
T ss_pred HHHHHHHHHhCCCH----HHHHHHHHHHHHHhcCCCCcHHHhhHHHHHHHHHHHhccccc--CccHHHHHHHhcCCCCHH
Confidence 45555556666553 556667777777777777788899999999999999876531 11234455555 37899
Q ss_pred HHHHHHHHHHHHH
Q 017247 276 KVSDCYKLILELA 288 (375)
Q Consensus 276 ~l~~C~~~i~~l~ 288 (375)
+|.++-..|.+.+
T Consensus 117 eI~~mE~~IL~~L 129 (269)
T 2b9r_A 117 QIRQMEMKILRAL 129 (269)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHc
Confidence 9999988887755
No 28
>3rgf_B Cyclin-C; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}
Probab=83.68 E-value=3.7 Score=38.10 Aligned_cols=85 Identities=13% Similarity=0.167 Sum_probs=56.4
Q ss_pred HHHHHHHHHhCCCCcchHHHHHHHHHHHHhhcccccccCCCHHHHHHHHHHHHHHHhCCCCCCCcccchhhc--------
Q 017247 198 SFLDHIIRRLGLKTSLHWEFLKRCERLLLTLVSDSRSVSYLPSVLATATMMHIIDQVEPVNPVDYQNQLLGV-------- 269 (375)
Q Consensus 198 ~FL~~fl~~l~~~~~~~~~~l~~~~~ll~~~l~d~~~l~~~PS~IAaAal~~a~~~l~~~~~~~~~~~L~~~-------- 269 (375)
+||......+++.. ..+..|..++...+....+.++.|-.||+|||++|.+.-+.... -...+..+
T Consensus 48 ~~I~~v~~~l~L~~----~t~~tA~~~~~RF~~~~s~~~~~~~lva~acLfLA~K~EE~~~~--~~~di~~~~~~~~k~~ 121 (285)
T 3rgf_B 48 NVIQALGEHLKLRQ----QVIATATVYFKRFYARYSLKSIDPVLMAPTCVFLASKVEEFGVV--SNTRLIAAATSVLKTR 121 (285)
T ss_dssp HHHHHHHHHTTCCH----HHHHHHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHHHTTSCCC--CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCH----HHHHHHHHHHHHHHHhCCchhcCHHHHHHHHHHHHHhhhccccc--cHHHHHHHHHHHHccc
Confidence 45555556666654 55667777777777778888999999999999999987653211 11112111
Q ss_pred --------cCCCHHHHHHHHHHHHHHH
Q 017247 270 --------LKISKEKVSDCYKLILELA 288 (375)
Q Consensus 270 --------~~i~~~~l~~C~~~i~~l~ 288 (375)
..+..++|..+-..|++.+
T Consensus 122 ~~~~~~~~~~~~~~~Il~~E~~iL~~L 148 (285)
T 3rgf_B 122 FSYAFPKEFPYRMNHILECEFYLLELM 148 (285)
T ss_dssp CTTTCCSCCCCCHHHHHHHHHHHHHHT
T ss_pred ccccCchhhHHHHHHHHHHHHHHHHHc
Confidence 1256788888877777654
No 29
>2w96_A G1/S-specific cyclin-D1; serine/threonine-protein kinase, chromosomal rearrangement, ATP-binding, transferase, polymorphism, cell division; 2.30A {Homo sapiens} PDB: 2w99_A 2w9f_A 2w9z_A
Probab=83.14 E-value=6.8 Score=35.84 Aligned_cols=85 Identities=13% Similarity=0.099 Sum_probs=55.1
Q ss_pred HHHHHHHHhCCCCcchHHHHHHHHHHHHhhcccccccCCCHHHHHHHHHHHHHHHhCCCCCCCcccchhhcc--CCCHHH
Q 017247 199 FLDHIIRRLGLKTSLHWEFLKRCERLLLTLVSDSRSVSYLPSVLATATMMHIIDQVEPVNPVDYQNQLLGVL--KISKEK 276 (375)
Q Consensus 199 FL~~fl~~l~~~~~~~~~~l~~~~~ll~~~l~d~~~l~~~PS~IAaAal~~a~~~l~~~~~~~~~~~L~~~~--~i~~~~ 276 (375)
|+......+++.. +.+..|..+++..+....+....+-.+|+||+++|.+.-+.. ++ -...+..++ .++.++
T Consensus 63 wl~~v~~~~~l~~----~tl~lAv~~lDRfls~~~v~~~~lqlv~~acL~iAsK~EE~~-p~-~~~~~~~~~~~~~~~~e 136 (271)
T 2w96_A 63 WMLEVCEEQKCEE----EVFPLAMNYLDRFLSLEPVKKSRLQLLGATCMFVASKMKETI-PL-TAEKLCIYTDNSIRPEE 136 (271)
T ss_dssp HHHHHHHHTTCCT----THHHHHHHHHHHHHTTSCCCTTTHHHHHHHHHHHHHHHHCSS-CC-CHHHHHHHTTTSSCHHH
T ss_pred HHHHHHHHHCCch----hHHHHHHHHHHHhCCcCCcCHHHHHHHHHHHHHHHHHHhhcC-CC-CHHHHHHHhcCCCCHHH
Confidence 3444444455543 334455566666665566777889999999999999976631 11 223344444 389999
Q ss_pred HHHHHHHHHHHHH
Q 017247 277 VSDCYKLILELAN 289 (375)
Q Consensus 277 l~~C~~~i~~l~~ 289 (375)
|.++-..|.+.+.
T Consensus 137 I~~mE~~IL~~L~ 149 (271)
T 2w96_A 137 LLQMELLLVNKLK 149 (271)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHCC
Confidence 9999888887653
No 30
>1jkw_A Cyclin H; cell cycle, cell division, nuclear protein; 2.60A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1kxu_A
Probab=82.87 E-value=7.2 Score=36.88 Aligned_cols=83 Identities=13% Similarity=0.142 Sum_probs=55.8
Q ss_pred HHHHHHHHhC--CCCcchHHHHHHHHHHHHhhcccccccCCCHHHHHHHHHHHHHHHhCCCCCCCcccchhhccCCC---
Q 017247 199 FLDHIIRRLG--LKTSLHWEFLKRCERLLLTLVSDSRSVSYLPSVLATATMMHIIDQVEPVNPVDYQNQLLGVLKIS--- 273 (375)
Q Consensus 199 FL~~fl~~l~--~~~~~~~~~l~~~~~ll~~~l~d~~~l~~~PS~IAaAal~~a~~~l~~~~~~~~~~~L~~~~~i~--- 273 (375)
+|..+...++ +.. ..+..|..++...+....+..+.|-.||+|||++|.+.-+.. .. ...+...++.+
T Consensus 63 ~I~ev~~~l~~~Lp~----~t~~tA~~~~~RF~~~~s~~~~~~~lva~acLfLA~K~EE~~--~~-l~d~v~~~~~~p~~ 135 (323)
T 1jkw_A 63 RLLEFCSVFKPAMPR----SVVGTACMYFKRFYLNNSVMEYHPRIIMLTCAFLACKVDEFN--VS-SPQFVGNLRESPLG 135 (323)
T ss_dssp HHHHHHHHCTTTCCH----HHHHHHHHHHHHHGGGSCTTTSCHHHHHHHHHHHHHHHTTCC--CC-HHHHGGGSSSCHHH
T ss_pred HHHHHHHHHcCCCCH----HHHHHHHHHHHHHhhhCChhhcCHHHHHHHHHHHHHhhhcCC--CC-HHHHHHHhccChhh
Confidence 4555556666 443 566778788888888888999999999999999999876532 21 22333334333
Q ss_pred ----HHHHHHHHHHHHHHH
Q 017247 274 ----KEKVSDCYKLILELA 288 (375)
Q Consensus 274 ----~~~l~~C~~~i~~l~ 288 (375)
.++|..+-..|.+.+
T Consensus 136 ~~~~~~~Il~~E~~iL~~L 154 (323)
T 1jkw_A 136 QEKALEQILEYELLLIQQL 154 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHHC
Confidence 466777766666543
No 31
>2f2c_A Cyclin homolog, V-cyclin; small molecule inhibitor bound between N-terminal and C-TERM domain of kinase, cell cycle-transferase complex; HET: AP9; 2.80A {Herpesvirus saimiri} SCOP: a.74.1.1 a.74.1.1 PDB: 1jow_A* 2euf_A* 1xo2_A* 1bu2_A
Probab=82.79 E-value=7.9 Score=35.03 Aligned_cols=87 Identities=10% Similarity=0.082 Sum_probs=59.3
Q ss_pred HHHHHHHHHHhCCCCcchHHHHHHHHHHHHhhcccccccCCCHHHHHHHHHHHHHHHhCCCCCCCcccchhhccC--CCH
Q 017247 197 ISFLDHIIRRLGLKTSLHWEFLKRCERLLLTLVSDSRSVSYLPSVLATATMMHIIDQVEPVNPVDYQNQLLGVLK--ISK 274 (375)
Q Consensus 197 ~~FL~~fl~~l~~~~~~~~~~l~~~~~ll~~~l~d~~~l~~~PS~IAaAal~~a~~~l~~~~~~~~~~~L~~~~~--i~~ 274 (375)
.+|+......+++.. +.+..|..+++..+..........-.+|+||+++|.+.-+.. .+ -...+..+++ ++.
T Consensus 56 vdwl~~v~~~~~l~~----etl~lAv~~~DRfls~~~v~~~~lqLv~~acl~iA~K~eE~~-~p-~~~d~~~~~~~~~~~ 129 (254)
T 2f2c_A 56 LTWMHLLCESFELDK----SVFPLSVSILDRYLCKKQGTKKTLQKIGAACVLIGSKIRTVK-PM-TVSKLTYLSCDCFTN 129 (254)
T ss_dssp HHHHHHHHHHTTCCT----THHHHHHHHHHHHTTTSCCCTTTHHHHHHHHHHHHHHHHCSS-CC-CHHHHSTTC---CCH
T ss_pred HHHHHHHHHHHCCCc----hHHHHHHHHHHHHHccCCcCHHHccHHHHHHHHHHHHhcccC-CC-CHHHHHHHhCCCCCH
Confidence 345555556666654 345566677777777777788899999999999999876531 11 2233444443 789
Q ss_pred HHHHHHHHHHHHHHH
Q 017247 275 EKVSDCYKLILELAN 289 (375)
Q Consensus 275 ~~l~~C~~~i~~l~~ 289 (375)
++|.++-..|.+.+.
T Consensus 130 ~~i~~mE~~IL~~L~ 144 (254)
T 2f2c_A 130 LELINQEKDILEALK 144 (254)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHCC
Confidence 999998888877664
No 32
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=81.30 E-value=3.7 Score=39.58 Aligned_cols=86 Identities=17% Similarity=0.129 Sum_probs=56.2
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHhh-ccccccCCchhHHHHHHHHHHhhhhhcccCCCcccc---e-eeeCCCccc
Q 017247 97 EWVLKVNAHYGFSTLTAILAINYLDRFLR-SFHFQIDKPWMIQLLAVTCLSLAAKVEETQVPLLLD---L-QVEGAKYVF 171 (375)
Q Consensus 97 ~Wi~~v~~~~~l~~~T~~lAV~ylDRfLs-~~~v~~~~~~~lqLvavaCL~LAaK~eE~~vp~l~d---l-~v~~~~~~f 171 (375)
.||......++.+.++..+|.+++..-+. ..-+-... ...||+||+++|+++....+|...+ . .+-+. .+
T Consensus 155 ~fL~~~~~~l~~~~~l~~~A~~ll~~sl~~t~l~l~y~---Ps~IAaAAI~lA~~~l~~~~p~~~~~~~W~~~~~~--~v 229 (358)
T 2pk2_A 155 THVVKCTQLVRASKDLAQTSYFMATNSLHLTTFSLQYT---PPVVACVCIHLACKWSNWEIPVSTDGKHWWEYVDA--TV 229 (358)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHTTTSCGGGTSC---HHHHTTTTTTTHHHHTTCCCCCCSSSCCTTTTSCS--SC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhccC---HHHHHHHHHHHHHHHhCCCCCCCccccchHHHHhc--cC
Confidence 35566667778888888889888865542 22233445 7899999999999997654443211 1 01111 23
Q ss_pred cHHHHHHHHHHHHHHc
Q 017247 172 ETKAIQRMELLVLSTL 187 (375)
Q Consensus 172 ~~~~I~~mE~~IL~~L 187 (375)
+.++|...-..|+..+
T Consensus 230 t~~~l~~i~~~il~~y 245 (358)
T 2pk2_A 230 TLELLDELTHEFLQIL 245 (358)
T ss_dssp CHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHH
Confidence 7888888877777654
No 33
>3h4c_A Transcription factor TFIIB-like; cyclin, transcription factor TFIIB repeat; 2.30A {Trypanosoma brucei brucei}
Probab=80.92 E-value=12 Score=33.29 Aligned_cols=149 Identities=15% Similarity=0.181 Sum_probs=90.9
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhccc---cccCCchhHHHHHHHHHHhhhhhcccCCCcccceeeeCCCcc
Q 017247 94 EAVEWVLKVNAHYGFSTLTAILAINYLDRFLRSFH---FQIDKPWMIQLLAVTCLSLAAKVEETQVPLLLDLQVEGAKYV 170 (375)
Q Consensus 94 ~~v~Wi~~v~~~~~l~~~T~~lAV~ylDRfLs~~~---v~~~~~~~lqLvavaCL~LAaK~eE~~vp~l~dl~v~~~~~~ 170 (375)
.+.+-|+.++.+-+++..++--||.+-..|.-... ..-.+ .+-+|+||+.||+---.. +..+.++.+-+...
T Consensus 14 ~M~nclr~L~kKs~~~eaVL~~AieLar~fvg~rR~rgqRvE~---q~dVAAAc~miAae~~~~-PiplaE~r~lD~sL- 88 (260)
T 3h4c_A 14 TMLNCMRGLHKKAVLPEPVLDRGIELARAFVGGRRARGQRVER---QPDVAAACLMIAAEEAQQ-PLPLAEVRCLDSSL- 88 (260)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHTTCCCCC---HHHHHHHHHHHHHHHTTC-CCCHHHHHHHCTTC-
T ss_pred HHHHHHHHHHhhccCcHHHHHHHHHHHHHHhhhhhhhcccccc---cHHHHHHHHHHHHHHcCC-CccHHHHHHHhhhh-
Confidence 34566788999999999999999999999886532 22335 899999999999864333 33455553223322
Q ss_pred ccHHHHHHHHHHHHHHcCcc-----ccCCChHHHHHHHHHHhCCCCcchHHHHHHHHHHHHhhcccccccCCCHHHHHHH
Q 017247 171 FETKAIQRMELLVLSTLEWK-----MHPVTPISFLDHIIRRLGLKTSLHWEFLKRCERLLLTLVSDSRSVSYLPSVLATA 245 (375)
Q Consensus 171 f~~~~I~~mE~~IL~~L~w~-----l~~~Tp~~FL~~fl~~l~~~~~~~~~~l~~~~~ll~~~l~d~~~l~~~PS~IAaA 245 (375)
.+|.---..|+..|+-. |...-.-..|.+|+..+++.-. .+.-.|..++..+-..-.+..+.-..--.-
T Consensus 89 ---~Dvelrr~Eiv~~l~l~e~e~rl~~~~~~NLl~~Yv~kL~Lq~s---~Y~p~C~rL~~ai~~ve~LA~~~~~drii~ 162 (260)
T 3h4c_A 89 ---GDVELRRADIVRELHLEDSERRLRDTFADNLLVKYILKLGLQVS---LYLPHCKRLLTALGRVEALAGLTVADRVTT 162 (260)
T ss_dssp ---CCHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHTTCCHH---HHHHHHHHHHHHHHTCGGGTTCCHHHHHHH
T ss_pred ---hHHHHHHHHHHHHccCCHHHHHHHHHhhhhHHHHHHHHhccchh---hhhhHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 13333334466666653 2222233455667777876421 233457777665544444556655544455
Q ss_pred HHHHHHHH
Q 017247 246 TMMHIIDQ 253 (375)
Q Consensus 246 al~~a~~~ 253 (375)
++++|+..
T Consensus 163 AlLLArT~ 170 (260)
T 3h4c_A 163 ALLLARTA 170 (260)
T ss_dssp HHHHHHHS
T ss_pred HHHHHhcc
Confidence 67777643
No 34
>2cch_B Cyclin A2, cyclin-A; complex(transferase/cell division), ATP-binding, CDK2, cell cycle, cyclin, mitosis, nuclear protein; HET: TPO ATP; 1.7A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1fvv_B* 1jsu_B* 1okv_B 1okw_B* 1ol1_B* 1ol2_B* 1urc_B 1fin_B* 2c5p_B* 2c5o_B* 2i40_B* 2wev_B* 2wfy_B 2whb_B* 3eid_B* 3ej1_B* 3eoc_B* 2wha_B* 2x1n_B* 1vyw_B* ...
Probab=79.78 E-value=4.9 Score=36.60 Aligned_cols=84 Identities=15% Similarity=0.122 Sum_probs=51.9
Q ss_pred HHHHHHHHhCCCCcchHHHHHHHHHHHHhhcccccccCCCHHHHHHHHHHHHHHHhCCCCCCCcccchhhcc--CCCHHH
Q 017247 199 FLDHIIRRLGLKTSLHWEFLKRCERLLLTLVSDSRSVSYLPSVLATATMMHIIDQVEPVNPVDYQNQLLGVL--KISKEK 276 (375)
Q Consensus 199 FL~~fl~~l~~~~~~~~~~l~~~~~ll~~~l~d~~~l~~~PS~IAaAal~~a~~~l~~~~~~~~~~~L~~~~--~i~~~~ 276 (375)
|+......+++.. +.+..|..+++..+....+.....-.+|+||+++|.+.-+.. +.-...+..++ .++.++
T Consensus 45 wl~~v~~~~~l~~----~tl~lAv~~lDRfls~~~v~~~~lqlv~~acl~iA~K~ee~~--~~~~~d~~~i~~~~~~~~~ 118 (260)
T 2cch_B 45 WLVEVGEEYKLQN----ETLHLAVNYIDRFLSSMSVLRGKLQLVGTAAMLLASKFEEIY--PPEVAEFVYITDDTYTKKQ 118 (260)
T ss_dssp HHHHHHHHTTCCH----HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCSS--CCCHHHHHHHTTSSSCHHH
T ss_pred HHHHHHHHhCCCH----HHHHHHHHHHHHHhccCCCCHHHHhHHHHHHHHHHHHhcccC--CCCHHHHHHHHcCCcCHHH
Confidence 4444444444433 334445555555544445555667789999999999876531 11233444455 388999
Q ss_pred HHHHHHHHHHHH
Q 017247 277 VSDCYKLILELA 288 (375)
Q Consensus 277 l~~C~~~i~~l~ 288 (375)
|.++-..|.+.+
T Consensus 119 i~~mE~~iL~~L 130 (260)
T 2cch_B 119 VLRMEHLVLKVL 130 (260)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHc
Confidence 999888887765
No 35
>1g3n_C V-cyclin; cyclin-dependent kinase, INK4 inhibitor, viral cyclin, cell cycle, signaling protein; 2.90A {Human herpesvirus 8} SCOP: a.74.1.1 a.74.1.1
Probab=79.20 E-value=6.7 Score=35.58 Aligned_cols=86 Identities=14% Similarity=0.101 Sum_probs=57.2
Q ss_pred HHHHHHHHHhCCCCcchHHHHHHHHHHHHhhcccccccCCCHHHHHHHHHHHHHHHhCCCCCCCcccchhhccC--CCHH
Q 017247 198 SFLDHIIRRLGLKTSLHWEFLKRCERLLLTLVSDSRSVSYLPSVLATATMMHIIDQVEPVNPVDYQNQLLGVLK--ISKE 275 (375)
Q Consensus 198 ~FL~~fl~~l~~~~~~~~~~l~~~~~ll~~~l~d~~~l~~~PS~IAaAal~~a~~~l~~~~~~~~~~~L~~~~~--i~~~ 275 (375)
+|+......+++.. +.+..|..+++..+....+.....-.+|+||+++|.+.-+.. .+ -...+..+++ ++.+
T Consensus 56 dwl~ev~~~~~l~~----etl~lAv~~~DRfls~~~v~~~~lqLv~~acl~iA~K~eE~~-~p-~~~d~~~~~~~~~~~~ 129 (257)
T 1g3n_C 56 TWMFSVCQEYNLEP----NVVALALNLLDRLLLIKQVSKEHFQKTGSACLLVASKLRSLT-PI-STSSLCYAAADSFSRQ 129 (257)
T ss_dssp HHHHHHHHHTTCCH----HHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHCSS-CC-CHHHHHHHTTTCSCHH
T ss_pred HHHHHHHHHhCCCc----cHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHcccc-CC-CHHHHHHHHCCCCCHH
Confidence 34444445555443 455666677777766666777778899999999999876521 11 2334444543 8999
Q ss_pred HHHHHHHHHHHHHH
Q 017247 276 KVSDCYKLILELAN 289 (375)
Q Consensus 276 ~l~~C~~~i~~l~~ 289 (375)
+|.++-..|.+.+.
T Consensus 130 ~i~~mE~~iL~~L~ 143 (257)
T 1g3n_C 130 ELIDQEKELLEKLA 143 (257)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHCC
Confidence 99998888877653
No 36
>3g33_B CCND3 protein; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}
Probab=77.21 E-value=10 Score=35.46 Aligned_cols=85 Identities=14% Similarity=0.093 Sum_probs=53.1
Q ss_pred HHHHHHHHHhCCCCcchHHHHHHHHHHHHhhcccccccCCCHHHHHHHHHHHHHHHhCCCCCCCcccchhhccC--CCHH
Q 017247 198 SFLDHIIRRLGLKTSLHWEFLKRCERLLLTLVSDSRSVSYLPSVLATATMMHIIDQVEPVNPVDYQNQLLGVLK--ISKE 275 (375)
Q Consensus 198 ~FL~~fl~~l~~~~~~~~~~l~~~~~ll~~~l~d~~~l~~~PS~IAaAal~~a~~~l~~~~~~~~~~~L~~~~~--i~~~ 275 (375)
+|+......+++.. +.+..|..+++..+....+....+-.+|+||+++|.+.-+.. .+ -...+..+++ ++++
T Consensus 76 dwl~ev~~~~~l~~----~t~~lAv~~lDRfls~~~v~~~~lqLv~~tcL~lAsK~eE~~-p~-~~~~l~~~~~~~~~~~ 149 (306)
T 3g33_B 76 YWMLEVCEEQRCEE----EVFPLAMNYLDRYLSCVPTRKAQLQLLGAVCMLLASKLRETT-PL-TIEKLCIYTDHAVSPR 149 (306)
T ss_dssp HHHHHHHHHTTCCT----THHHHHHHHHHHHHHHCCCCGGGHHHHHHHHHHHHHHHHCSS-CC-CTTHHHHHTTTSSCHH
T ss_pred HHHHHHHHHhCCcH----hHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhccCC-CC-CHHHHHHHhccCccHH
Confidence 34444455555554 233444455555555555677888899999999999875532 11 2233444444 7889
Q ss_pred HHHHHHHHHHHHH
Q 017247 276 KVSDCYKLILELA 288 (375)
Q Consensus 276 ~l~~C~~~i~~l~ 288 (375)
+|.++=..|++.+
T Consensus 150 ~i~~mE~~IL~~L 162 (306)
T 3g33_B 150 QLRDWEVLVLGKL 162 (306)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHc
Confidence 9988877777654
No 37
>1w98_B Cyclin E, G1/S-specific cyclin E1; cell cycle, transferase; HET: TPO; 2.15A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=72.25 E-value=14 Score=33.99 Aligned_cols=72 Identities=13% Similarity=0.113 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHhhccc-ccccCCCHHHHHHHHHHHHHHHhCCCCCCCcccchhhcc--CCCHHHHHHHHHHHHHHHH
Q 017247 216 EFLKRCERLLLTLVSD-SRSVSYLPSVLATATMMHIIDQVEPVNPVDYQNQLLGVL--KISKEKVSDCYKLILELAN 289 (375)
Q Consensus 216 ~~l~~~~~ll~~~l~d-~~~l~~~PS~IAaAal~~a~~~l~~~~~~~~~~~L~~~~--~i~~~~l~~C~~~i~~l~~ 289 (375)
+.+..+..+++..+.. ....+...-.+|+||+++|.+.-+.. .+ -...+..++ .++.++|.++-..|.+.+.
T Consensus 69 ~tl~lAv~~lDRfls~~~~v~~~~lqlv~~acL~iA~K~eE~~-~p-~l~~~~~i~~~~~~~~ei~~mE~~IL~~L~ 143 (283)
T 1w98_B 69 ETFYLAQDFFDRYMATQENVVKTLLQLIGISSLFIAAKLEEIY-PP-KLHQFAYVTDGACSGDEILTMELMIMKALK 143 (283)
T ss_dssp HHHHHHHHHHHHHHHHCCCCCGGGHHHHHHHHHHHHHHHHCSS-CC-CHHHHHHTTTTSSCHHHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcccC-CC-cHHHHHHHHcCCCCHHHHHHHHHHHHHHcC
Confidence 4444555555554443 24567788899999999999876531 11 234454555 4789999999888887653
No 38
>1f5q_B Gamma herpesvirus cyclin; herpesviral cyclin, cyclin dependent kinase. protein/protein complex, transferase; 2.50A {Murid herpesvirus 4} SCOP: a.74.1.1 a.74.1.1
Probab=45.52 E-value=81 Score=28.39 Aligned_cols=84 Identities=13% Similarity=0.028 Sum_probs=48.1
Q ss_pred HHHHHHHHhCCCCcchHHHHHHHHHHHHhhcccccccCCCHHHHHHHHHHHHHHHhCCCCCCCcccchhhcc--CCCHHH
Q 017247 199 FLDHIIRRLGLKTSLHWEFLKRCERLLLTLVSDSRSVSYLPSVLATATMMHIIDQVEPVNPVDYQNQLLGVL--KISKEK 276 (375)
Q Consensus 199 FL~~fl~~l~~~~~~~~~~l~~~~~ll~~~l~d~~~l~~~PS~IAaAal~~a~~~l~~~~~~~~~~~L~~~~--~i~~~~ 276 (375)
|+-.....+++.. +.+..|..+++..+..........-.+|++|+++|.|.-+.. ++ -...+..++ .++.++
T Consensus 55 Wl~ev~~~~~l~~----eT~~lAv~~lDRfLs~~~v~~~~lqLvg~tcl~iAsK~eE~~-p~-~~~~l~~~~~~~yt~~~ 128 (252)
T 1f5q_B 55 WMFCVCKDLRQDN----NVFPLAVALLDELFLSTRIDRENYQSTAAVALHIAGKVRAYM-PI-KATQLAYLCGGATTADK 128 (252)
T ss_dssp HHHHHHHHTTCCT----THHHHHHHHHHHHHHHSCCCGGGHHHHHHHHHHHHHHHHCSS-CC-CHHHHHHHHCTTCCHHH
T ss_pred HHHHHHHHcCCCh----HHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHHHHHHHHhcC-CC-CHHHHHHHhCCCCCHHH
Confidence 4444444455443 233444445554444445556677889999999999876532 22 223333333 478888
Q ss_pred HHHHHHHHHHHH
Q 017247 277 VSDCYKLILELA 288 (375)
Q Consensus 277 l~~C~~~i~~l~ 288 (375)
|.+.=..|.+.+
T Consensus 129 i~~mE~~IL~~L 140 (252)
T 1f5q_B 129 LLTLEVKSLDTL 140 (252)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHC
Confidence 887666665544
No 39
>2pmi_B PHO85 cyclin PHO80, aminoglycoside anti; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_B*
Probab=36.23 E-value=1.2e+02 Score=28.23 Aligned_cols=87 Identities=8% Similarity=-0.026 Sum_probs=52.7
Q ss_pred CChHHHHHHHHHHhCCCCcchHHHHHHHHHHHHhhc---ccccccCCCHHHHHHHHHHHHHHHhCCCCCCCcccchhhcc
Q 017247 194 VTPISFLDHIIRRLGLKTSLHWEFLKRCERLLLTLV---SDSRSVSYLPSVLATATMMHIIDQVEPVNPVDYQNQLLGVL 270 (375)
Q Consensus 194 ~Tp~~FL~~fl~~l~~~~~~~~~~l~~~~~ll~~~l---~d~~~l~~~PS~IAaAal~~a~~~l~~~~~~~~~~~L~~~~ 270 (375)
++-..|+..+.+...+.. ..+-.+..+++... ...........-+-++|+.+|.+.++.. ..+...+.++.
T Consensus 75 ISI~~Yl~RI~k~t~ls~----~~ll~ALvYLdRL~~~~p~~~l~~~nvHRLlLtALmlAsK~ldD~--~ysN~~wAkVg 148 (293)
T 2pmi_B 75 ISIFNYFIRLTKFSSLEH----CVLMTSLYYIDLLQTVYPDFTLNSLTAHRFLLTATTVATKGLCDS--FSTNAHYAKVG 148 (293)
T ss_dssp SCHHHHHHHHHHTTTCCH----HHHHHHHHHHHHHHHHCTTCCCSTTTHHHHHHHHHHHHHHHHCSS--CCCHHHHHHHH
T ss_pred CcHHHHHHHHHHHcCCCH----HHHHHHHHHHHHHHhhCCCCccCCchHHHHHHHHHHHHHHhcccc--ccChhHhhhcc
Confidence 345677777777666542 22222323333322 2233446778888899999999998743 33556677788
Q ss_pred CCCHHHHHHHHHHHHH
Q 017247 271 KISKEKVSDCYKLILE 286 (375)
Q Consensus 271 ~i~~~~l~~C~~~i~~ 286 (375)
|++.+++..-=...+.
T Consensus 149 Gisl~ELN~LE~eFL~ 164 (293)
T 2pmi_B 149 GVRCHELNILENDFLK 164 (293)
T ss_dssp TSCHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHH
Confidence 8887777665444433
No 40
>3m03_A ORC6, origin recognition complex subunit 6; helix turn helix, DNA binding protein, origin recognition CO DNA replication; HET: MES; 2.50A {Homo sapiens}
Probab=28.83 E-value=1.9e+02 Score=22.20 Aligned_cols=82 Identities=12% Similarity=0.027 Sum_probs=0.0
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHhhccc-----cccCCchhHHHHHHHHHHhhhhhcccCCCcccceeeeCCCccccH
Q 017247 99 VLKVNAHYGFSTLTAILAINYLDRFLRSFH-----FQIDKPWMIQLLAVTCLSLAAKVEETQVPLLLDLQVEGAKYVFET 173 (375)
Q Consensus 99 i~~v~~~~~l~~~T~~lAV~ylDRfLs~~~-----v~~~~~~~lqLvavaCL~LAaK~eE~~vp~l~dl~v~~~~~~f~~ 173 (375)
+.+++..||+.. ..-.|-.+|++|=.... --.-. --..+++|++.|||..-..|+..+=+ ......+
T Consensus 6 v~dLcVqfgc~e-~~~~a~~lL~~Yk~~l~~~~~~~~D~s---~P~f~aaA~~~acr~~K~kVdK~KL~----~~s~lk~ 77 (95)
T 3m03_A 6 IRDLAVQFSCIE-AVNMASKILKSYESSLPQTQQVDLDLS---RPLFTSAALLSACKILKLKVDKNKMV----ATSGVKK 77 (95)
T ss_dssp HHHHHHHHTCGG-GHHHHHHHHHHHHTTSCHHHHHHCCTT---SHHHHHHHHHHHHHHTTCCCCHHHHH----HTTCBCH
T ss_pred HHHHHHHhCCHH-HHHHHHHHHHHHHHHhHHHhhcccccc---ccHHHHHHHHHHHHHHccCCCHHHHH----HHHCCCH
Q ss_pred HHHHHHHHHHHHHcC
Q 017247 174 KAIQRMELLVLSTLE 188 (375)
Q Consensus 174 ~~I~~mE~~IL~~L~ 188 (375)
.++.+.+..+-+.+.
T Consensus 78 ~~f~~l~~~~e~~~~ 92 (95)
T 3m03_A 78 AIFDRLCKQLEKIGQ 92 (95)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHH
No 41
>3i6x_A P195, RAS GTPase-activating-like protein iqgap1; all helical, calmodulin-binding, cell membrane, membrane, phosphoprotein, protein binding; 2.50A {Homo sapiens}
Probab=20.51 E-value=1.3e+02 Score=26.14 Aligned_cols=79 Identities=16% Similarity=0.241 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhccccccCCchhHHHHHHHHHHhhhhhcc-cCCCcccceeeeCC
Q 017247 89 VVARSEAVEWVLKVNAHYGFSTLTAILAINYLDRFLRSFHFQIDKPWMIQLLAVTCLSLAAKVEE-TQVPLLLDLQVEGA 167 (375)
Q Consensus 89 ~~~R~~~v~Wi~~v~~~~~l~~~T~~lAV~ylDRfLs~~~v~~~~~~~lqLvavaCL~LAaK~eE-~~vp~l~dl~v~~~ 167 (375)
...|..+-.| ++.+..+|++..-+|.++.++++ .+ +.-|..+=+.|+-+..- -..|.+.++. +
T Consensus 112 F~~~eNI~~F-L~ac~~~Gvp~~~lFet~DL~e~---------kn---~~~V~~cL~aL~~~a~~~G~~P~i~~l~---g 175 (193)
T 3i6x_A 112 FRHTDNVIQW-LNAMDEIGLPKIFYPETTDIYDR---------KN---MPRCIYCIHALSLYLFKLGLAPQIQDLY---G 175 (193)
T ss_dssp GGGHHHHHHH-HHHHHHHTCCGGGCCCHHHHHSC---------SC---HHHHHHHHHHHHHHHHHTTSSCCCCCCT---T
T ss_pred hHHHHHHHHH-HHHHHHcCCCcccCCCcHHHhcC---------CC---HHHHHHHHHHHHHHHhhCCCCCCccccc---C
Confidence 3445555555 45677899999888888877753 22 22222222222222211 1246666652 4
Q ss_pred CccccHHHHHHHHHHH
Q 017247 168 KYVFETKAIQRMELLV 183 (375)
Q Consensus 168 ~~~f~~~~I~~mE~~I 183 (375)
+..|+.++|.+|+..+
T Consensus 176 ~~~Ft~eei~~~~~~l 191 (193)
T 3i6x_A 176 KVDFTEEEINNMKTEL 191 (193)
T ss_dssp TCCCCHHHHHHHHHHT
T ss_pred CCCcCHHHHHHHHHHh
Confidence 5678999999998764
Done!