BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017249
(375 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4DB8|A Chain A, Designed Armadillo-Repeat Protein
pdb|4DB8|B Chain B, Designed Armadillo-Repeat Protein
pdb|4DB8|C Chain C, Designed Armadillo-Repeat Protein
pdb|4DB8|D Chain D, Designed Armadillo-Repeat Protein
Length = 252
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 53/205 (25%), Positives = 91/205 (44%), Gaps = 4/205 (1%)
Query: 29 ELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIESS 88
+++ +L + D++ ++ A R +++ + + ++ AG + LV +L SPN ++ +
Sbjct: 16 QMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQA-VIDAGALPALVQLLSSPNEQILQEA 74
Query: 89 LLALLNLAVRNERNKVKIATAGAIPPLVELLKFQN-GTLREXXXXXXXXXXXXXXXXXXX 147
L AL N+A + AGA+P LV+LL N L+E
Sbjct: 75 LWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAV 134
Query: 148 XXXXXXXLLVQILHSGSVQGRVDAVTALHYL-STCKENSSPILDATAVPPLINLLKDCKK 206
LVQ+L S + Q +A+ AL + S E ++DA A+P L+ LL +
Sbjct: 135 IDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNE 194
Query: 207 YSKFAEKATALLEILSSSEEGRIAI 231
E AL I S E + A+
Sbjct: 195 Q-ILQEALWALSNIASGGNEQKQAV 218
>pdb|4DBA|A Chain A, Designed Armadillo Repeat Protein (Yiim3aii)
pdb|4DBA|B Chain B, Designed Armadillo Repeat Protein (Yiim3aii)
pdb|4DBA|C Chain C, Designed Armadillo Repeat Protein (Yiim3aii)
pdb|4DBA|D Chain D, Designed Armadillo Repeat Protein (Yiim3aii)
Length = 210
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 51/95 (53%), Gaps = 1/95 (1%)
Query: 29 ELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIESS 88
+++ +L + D++ ++ A R +++ + + ++ AG + LV +L SPN ++ +
Sbjct: 16 QMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQA-VIDAGALPALVQLLSSPNEQILQEA 74
Query: 89 LLALLNLAVRNERNKVKIATAGAIPPLVELLKFQN 123
L AL N+A + AGA+P LV+LL N
Sbjct: 75 LWALSNIASGGNEQIQAVIDAGALPALVQLLSSPN 109
>pdb|4BA3|A Chain A, Mimp_alphadibb_a89nls
Length = 496
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 58/291 (19%), Positives = 109/291 (37%), Gaps = 19/291 (6%)
Query: 42 KIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIESSLLALLNLAVRNER 101
+ E+A + + +S +T++ G + + +L SP+ E ++ AL N+A
Sbjct: 104 QFESAWALTNIASGTSEQTKA-VVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSA 162
Query: 102 NKVKIATAGAIPPLVELLKFQN------GTLREXXXXXXXXXXXXXXXXXXXXXXXXXXL 155
+ + GAI PL+ LL + G LR
Sbjct: 163 FRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPT 222
Query: 156 LVQILHSGSVQGRVDAVTALHYLSTC-KENSSPILDATAVPPLINLLKDCKKYSKFAEKA 214
LV++LH + D+ A+ YL+ E ++ VP L+ LL +
Sbjct: 223 LVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLG-ATELPIVTPAL 281
Query: 215 TALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQL 274
A+ I++ ++E + D G L + ++ + Q +S + R Q
Sbjct: 282 RAIGNIVTGTDEQTQKVI--DAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQ 339
Query: 275 ILKEGAIPGLLRLTVEGTFEAQERAXXXXXXXXXXPQEKRLSSSVLEKIVY 325
++ G +P L+ + + F+ Q+ A S +E+IVY
Sbjct: 340 VVNHGLVPFLVGVLSKADFKTQKEAAWAIT--------NYTSGGTVEQIVY 382
Score = 32.3 bits (72), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 23/103 (22%), Positives = 46/103 (44%), Gaps = 1/103 (0%)
Query: 27 IEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIE 86
+E++ + + +LE++++A + RK++ + AG++ V L + I+
Sbjct: 45 VEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQ 104
Query: 87 -SSLLALLNLAVRNERNKVKIATAGAIPPLVELLKFQNGTLRE 128
S AL N+A + GAIP + LL + + E
Sbjct: 105 FESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISE 147
>pdb|3RZ9|A Chain A, Mouse Importin Alpha-Ku80 Nls Peptide Complex
pdb|3RZX|A Chain A, Mouse Importin Alpha-Ku70 Nls Peptide Complex
pdb|3OQS|A Chain A, Crystal Structure Of Importin-Alpha Bound To A Clic4 Nls
Peptide
pdb|3UVU|A Chain A, Structural Basis Of Nuclear Import Of Flap Endonuclease 1
(fen1)
Length = 510
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 58/291 (19%), Positives = 109/291 (37%), Gaps = 19/291 (6%)
Query: 42 KIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIESSLLALLNLAVRNER 101
+ E+A + + +S +T++ G + + +L SP+ E ++ AL N+A
Sbjct: 118 QFESAWALTNIASGTSEQTKA-VVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSA 176
Query: 102 NKVKIATAGAIPPLVELLKFQN------GTLREXXXXXXXXXXXXXXXXXXXXXXXXXXL 155
+ + GAI PL+ LL + G LR
Sbjct: 177 FRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPT 236
Query: 156 LVQILHSGSVQGRVDAVTALHYLSTC-KENSSPILDATAVPPLINLLKDCKKYSKFAEKA 214
LV++LH + D+ A+ YL+ E ++ VP L+ LL +
Sbjct: 237 LVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLG-ATELPIVTPAL 295
Query: 215 TALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQL 274
A+ I++ ++E + D G L + ++ + Q +S + R Q
Sbjct: 296 RAIGNIVTGTDEQTQKVI--DAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQ 353
Query: 275 ILKEGAIPGLLRLTVEGTFEAQERAXXXXXXXXXXPQEKRLSSSVLEKIVY 325
++ G +P L+ + + F+ Q+ A S +E+IVY
Sbjct: 354 VVNHGLVPFLVGVLSKADFKTQKEAAWAIT--------NYTSGGTVEQIVY 396
Score = 32.3 bits (72), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 23/103 (22%), Positives = 46/103 (44%), Gaps = 1/103 (0%)
Query: 27 IEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIE 86
+E++ + + +LE++++A + RK++ + AG++ V L + I+
Sbjct: 59 VEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQ 118
Query: 87 -SSLLALLNLAVRNERNKVKIATAGAIPPLVELLKFQNGTLRE 128
S AL N+A + GAIP + LL + + E
Sbjct: 119 FESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISE 161
>pdb|3UKW|B Chain B, Mouse Importin Alpha: Bimax1 Peptide Complex
pdb|3UKX|B Chain B, Mouse Importin Alpha: Bimax2 Peptide Complex
pdb|3UKY|B Chain B, Mouse Importin Alpha: Yeast Cbp80 Cnls Complex
pdb|3UKZ|B Chain B, Mouse Importin Alpha: Mouse Cbp80 Cnls Complex
pdb|3UL0|B Chain B, Mouse Importin Alpha: Mouse Cbp80y8d Cnls Complex
pdb|3UL1|B Chain B, Mouse Importin Alpha: Nucleoplasmin Cnls Peptide Complex
Length = 510
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 58/291 (19%), Positives = 109/291 (37%), Gaps = 19/291 (6%)
Query: 42 KIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIESSLLALLNLAVRNER 101
+ E+A + + +S +T++ G + + +L SP+ E ++ AL N+A
Sbjct: 118 QFESAWALTNIASGTSEQTKA-VVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSA 176
Query: 102 NKVKIATAGAIPPLVELLKFQN------GTLREXXXXXXXXXXXXXXXXXXXXXXXXXXL 155
+ + GAI PL+ LL + G LR
Sbjct: 177 FRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPT 236
Query: 156 LVQILHSGSVQGRVDAVTALHYLSTC-KENSSPILDATAVPPLINLLKDCKKYSKFAEKA 214
LV++LH + D+ A+ YL+ E ++ VP L+ LL +
Sbjct: 237 LVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLG-ATELPIVTPAL 295
Query: 215 TALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQL 274
A+ I++ ++E + D G L + ++ + Q +S + R Q
Sbjct: 296 RAIGNIVTGTDEQTQKVI--DAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQ 353
Query: 275 ILKEGAIPGLLRLTVEGTFEAQERAXXXXXXXXXXPQEKRLSSSVLEKIVY 325
++ G +P L+ + + F+ Q+ A S +E+IVY
Sbjct: 354 VVNHGLVPFLVGVLSKADFKTQKEAAWAIT--------NYTSGGTVEQIVY 396
Score = 32.0 bits (71), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 23/103 (22%), Positives = 46/103 (44%), Gaps = 1/103 (0%)
Query: 27 IEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIE 86
+E++ + + +LE++++A + RK++ + AG++ V L + I+
Sbjct: 59 VEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQ 118
Query: 87 -SSLLALLNLAVRNERNKVKIATAGAIPPLVELLKFQNGTLRE 128
S AL N+A + GAIP + LL + + E
Sbjct: 119 FESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISE 161
>pdb|4HTV|A Chain A, Mouse Importin Alpha: Bfdv Cap Nls Peptide Complex
Length = 509
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 58/291 (19%), Positives = 109/291 (37%), Gaps = 19/291 (6%)
Query: 42 KIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIESSLLALLNLAVRNER 101
+ E+A + + +S +T++ G + + +L SP+ E ++ AL N+A
Sbjct: 118 QFESAWALTNIASGTSEQTKA-VVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSA 176
Query: 102 NKVKIATAGAIPPLVELLKFQN------GTLREXXXXXXXXXXXXXXXXXXXXXXXXXXL 155
+ + GAI PL+ LL + G LR
Sbjct: 177 FRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPT 236
Query: 156 LVQILHSGSVQGRVDAVTALHYLSTC-KENSSPILDATAVPPLINLLKDCKKYSKFAEKA 214
LV++LH + D+ A+ YL+ E ++ VP L+ LL +
Sbjct: 237 LVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLG-ATELPIVTPAL 295
Query: 215 TALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQL 274
A+ I++ ++E + D G L + ++ + Q +S + R Q
Sbjct: 296 RAIGNIVTGTDEQTQKVI--DAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQ 353
Query: 275 ILKEGAIPGLLRLTVEGTFEAQERAXXXXXXXXXXPQEKRLSSSVLEKIVY 325
++ G +P L+ + + F+ Q+ A S +E+IVY
Sbjct: 354 VVNHGLVPFLVGVLSKADFKTQKEAAWAIT--------NYTSGGTVEQIVY 396
Score = 32.0 bits (71), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 23/103 (22%), Positives = 46/103 (44%), Gaps = 1/103 (0%)
Query: 27 IEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIE 86
+E++ + + +LE++++A + RK++ + AG++ V L + I+
Sbjct: 59 VEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQ 118
Query: 87 -SSLLALLNLAVRNERNKVKIATAGAIPPLVELLKFQNGTLRE 128
S AL N+A + GAIP + LL + + E
Sbjct: 119 FESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISE 161
>pdb|1IAL|A Chain A, Importin Alpha, Mouse
Length = 453
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 58/291 (19%), Positives = 109/291 (37%), Gaps = 19/291 (6%)
Query: 42 KIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIESSLLALLNLAVRNER 101
+ E+A + + +S +T++ G + + +L SP+ E ++ AL N+A
Sbjct: 94 QFESAWALTNIASGTSEQTKA-VVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSA 152
Query: 102 NKVKIATAGAIPPLVELLKFQN------GTLREXXXXXXXXXXXXXXXXXXXXXXXXXXL 155
+ + GAI PL+ LL + G LR
Sbjct: 153 FRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPT 212
Query: 156 LVQILHSGSVQGRVDAVTALHYLSTC-KENSSPILDATAVPPLINLLKDCKKYSKFAEKA 214
LV++LH + D+ A+ YL+ E ++ VP L+ LL +
Sbjct: 213 LVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLL-GATELPIVTPAL 271
Query: 215 TALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQL 274
A+ I++ ++E + D G L + ++ + Q +S + R Q
Sbjct: 272 RAIGNIVTGTDEQTQKVI--DAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQ 329
Query: 275 ILKEGAIPGLLRLTVEGTFEAQERAXXXXXXXXXXPQEKRLSSSVLEKIVY 325
++ G +P L+ + + F+ Q+ A S +E+IVY
Sbjct: 330 VVNHGLVPFLVGVLSKADFKTQKEAAWAIT--------NYTSGGTVEQIVY 372
Score = 32.3 bits (72), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 28/126 (22%), Positives = 54/126 (42%), Gaps = 11/126 (8%)
Query: 4 EENKNKAATDQEEEAWNQRKQALIEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSE 63
+EN+N T W+ +E++ + + +LE++++A + RK++ +
Sbjct: 22 QENRNNQGTVN----WS------VEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDN 71
Query: 64 FAAAGVVQPLVLMLVSPNLDAIE-SSLLALLNLAVRNERNKVKIATAGAIPPLVELLKFQ 122
AG++ V L + I+ S AL N+A + GAIP + LL
Sbjct: 72 IIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASP 131
Query: 123 NGTLRE 128
+ + E
Sbjct: 132 HAHISE 137
>pdb|3TPO|A Chain A, Crystal Structure Of D192aE396A MUTANT OF MOUSE IMPORTIN
ALPHA2
Length = 529
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 58/291 (19%), Positives = 109/291 (37%), Gaps = 19/291 (6%)
Query: 42 KIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIESSLLALLNLAVRNER 101
+ E+A + + +S +T++ G + + +L SP+ E ++ AL N+A
Sbjct: 137 QFESAWALTNIASGTSEQTKA-VVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSA 195
Query: 102 NKVKIATAGAIPPLVELLKFQN------GTLREXXXXXXXXXXXXXXXXXXXXXXXXXXL 155
+ + GAI PL+ LL + G LR
Sbjct: 196 FRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPT 255
Query: 156 LVQILHSGSVQGRVDAVTALHYLSTC-KENSSPILDATAVPPLINLLKDCKKYSKFAEKA 214
LV++LH + D+ A+ YL+ E ++ VP L+ LL +
Sbjct: 256 LVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLL-GATELPIVTPAL 314
Query: 215 TALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQL 274
A+ I++ ++E + D G L + ++ + Q +S + R Q
Sbjct: 315 RAIGNIVTGTDEQTQKVI--DAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQ 372
Query: 275 ILKEGAIPGLLRLTVEGTFEAQERAXXXXXXXXXXPQEKRLSSSVLEKIVY 325
++ G +P L+ + + F+ Q+ A S +E+IVY
Sbjct: 373 VVNHGLVPFLVGVLSKADFKTQKAAAWAIT--------NYTSGGTVEQIVY 415
Score = 32.3 bits (72), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 27/117 (23%), Positives = 51/117 (43%), Gaps = 11/117 (9%)
Query: 4 EENKNKAATDQEEEAWNQRKQALIEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSE 63
+EN+N T W+ +E++ + + +LE++++A + RK++ +
Sbjct: 65 QENRNNQGTVN----WS------VEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDN 114
Query: 64 FAAAGVVQPLVLMLVSPNLDAIE-SSLLALLNLAVRNERNKVKIATAGAIPPLVELL 119
AG++ V L + I+ S AL N+A + GAIP + LL
Sbjct: 115 IIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLL 171
>pdb|2YNR|A Chain A, Mimp_alphadibb_b54nls
Length = 461
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 58/291 (19%), Positives = 109/291 (37%), Gaps = 19/291 (6%)
Query: 42 KIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIESSLLALLNLAVRNER 101
+ E+A + + +S +T++ G + + +L SP+ E ++ AL N+A
Sbjct: 102 QFESAWALTNIASGTSEQTKA-VVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSA 160
Query: 102 NKVKIATAGAIPPLVELLKFQN------GTLREXXXXXXXXXXXXXXXXXXXXXXXXXXL 155
+ + GAI PL+ LL + G LR
Sbjct: 161 FRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPT 220
Query: 156 LVQILHSGSVQGRVDAVTALHYLSTC-KENSSPILDATAVPPLINLLKDCKKYSKFAEKA 214
LV++LH + D+ A+ YL+ E ++ VP L+ LL +
Sbjct: 221 LVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLG-ATELPIVTPAL 279
Query: 215 TALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQL 274
A+ I++ ++E + D G L + ++ + Q +S + R Q
Sbjct: 280 RAIGNIVTGTDEQTQKVI--DAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQ 337
Query: 275 ILKEGAIPGLLRLTVEGTFEAQERAXXXXXXXXXXPQEKRLSSSVLEKIVY 325
++ G +P L+ + + F+ Q+ A S +E+IVY
Sbjct: 338 VVNHGLVPFLVGVLSKADFKTQKEAAWAIT--------NYTSGGTVEQIVY 380
Score = 32.0 bits (71), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 23/103 (22%), Positives = 46/103 (44%), Gaps = 1/103 (0%)
Query: 27 IEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIE 86
+E++ + + +LE++++A + RK++ + AG++ V L + I+
Sbjct: 43 VEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQ 102
Query: 87 -SSLLALLNLAVRNERNKVKIATAGAIPPLVELLKFQNGTLRE 128
S AL N+A + GAIP + LL + + E
Sbjct: 103 FESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISE 145
>pdb|1Q1S|C Chain C, Mouse Importin Alpha- Phosphorylated Sv40 Cn Peptide
Complex
pdb|1Q1T|C Chain C, Mouse Importin Alpha: Non-Phosphorylated Sv40 Cn Peptide
Complex
Length = 466
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 58/291 (19%), Positives = 109/291 (37%), Gaps = 19/291 (6%)
Query: 42 KIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIESSLLALLNLAVRNER 101
+ E+A + + +S +T++ G + + +L SP+ E ++ AL N+A
Sbjct: 74 QFESAWALTNIASGTSEQTKA-VVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSA 132
Query: 102 NKVKIATAGAIPPLVELLKFQN------GTLREXXXXXXXXXXXXXXXXXXXXXXXXXXL 155
+ + GAI PL+ LL + G LR
Sbjct: 133 FRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPT 192
Query: 156 LVQILHSGSVQGRVDAVTALHYLSTC-KENSSPILDATAVPPLINLLKDCKKYSKFAEKA 214
LV++LH + D+ A+ YL+ E ++ VP L+ LL +
Sbjct: 193 LVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLL-GATELPIVTPAL 251
Query: 215 TALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQL 274
A+ I++ ++E + D G L + ++ + Q +S + R Q
Sbjct: 252 RAIGNIVTGTDEQTQKVI--DAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQ 309
Query: 275 ILKEGAIPGLLRLTVEGTFEAQERAXXXXXXXXXXPQEKRLSSSVLEKIVY 325
++ G +P L+ + + F+ Q+ A S +E+IVY
Sbjct: 310 VVNHGLVPFLVGVLSKADFKTQKEAAWAIT--------NYTSGGTVEQIVY 352
Score = 32.0 bits (71), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 23/103 (22%), Positives = 46/103 (44%), Gaps = 1/103 (0%)
Query: 27 IEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIE 86
+E++ + + +LE++++A + RK++ + AG++ V L + I+
Sbjct: 15 VEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQ 74
Query: 87 -SSLLALLNLAVRNERNKVKIATAGAIPPLVELLKFQNGTLRE 128
S AL N+A + GAIP + LL + + E
Sbjct: 75 FESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISE 117
>pdb|1EJL|I Chain I, Mouse Importin Alpha-Sv40 Large T Antigen Nls Peptide
Complex
pdb|1EJY|I Chain I, Mouse Importin Alpha-Nucleoplasmin Nls Peptide Complex
pdb|1IQ1|C Chain C, Crystal Structure Of The Importin-Alpha(44-54)-Importin-
Alpha(70-529) Complex
pdb|1PJM|B Chain B, Mouse Importin Alpha-Bipartite Nls From Human
Retinoblastoma Protein Complex
pdb|1PJN|B Chain B, Mouse Importin Alpha-Bipartite Nls N1n2 From Xenopus
Laevis Phosphoprotein Complex
pdb|3KND|A Chain A, Tpx2:importin-Alpha Complex
pdb|3Q5U|A Chain A, A Minimal Nls From Human Scramblase 4 Complexed With
Importin Alpha
Length = 460
Score = 37.7 bits (86), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 58/291 (19%), Positives = 109/291 (37%), Gaps = 19/291 (6%)
Query: 42 KIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIESSLLALLNLAVRNER 101
+ E+A + + +S +T++ G + + +L SP+ E ++ AL N+A
Sbjct: 68 QFESAWALTNIASGTSEQTKA-VVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSA 126
Query: 102 NKVKIATAGAIPPLVELLKFQN------GTLREXXXXXXXXXXXXXXXXXXXXXXXXXXL 155
+ + GAI PL+ LL + G LR
Sbjct: 127 FRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPT 186
Query: 156 LVQILHSGSVQGRVDAVTALHYLSTC-KENSSPILDATAVPPLINLLKDCKKYSKFAEKA 214
LV++LH + D+ A+ YL+ E ++ VP L+ LL +
Sbjct: 187 LVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLL-GATELPIVTPAL 245
Query: 215 TALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQL 274
A+ I++ ++E + D G L + ++ + Q +S + R Q
Sbjct: 246 RAIGNIVTGTDEQTQKVI--DAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQ 303
Query: 275 ILKEGAIPGLLRLTVEGTFEAQERAXXXXXXXXXXPQEKRLSSSVLEKIVY 325
++ G +P L+ + + F+ Q+ A S +E+IVY
Sbjct: 304 VVNHGLVPFLVGVLSKADFKTQKEAAWAIT--------NYTSGGTVEQIVY 346
Score = 32.0 bits (71), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 23/103 (22%), Positives = 46/103 (44%), Gaps = 1/103 (0%)
Query: 27 IEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIE 86
+E++ + + +LE++++A + RK++ + AG++ V L + I+
Sbjct: 9 VEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQ 68
Query: 87 -SSLLALLNLAVRNERNKVKIATAGAIPPLVELLKFQNGTLRE 128
S AL N+A + GAIP + LL + + E
Sbjct: 69 FESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISE 111
>pdb|3BTR|C Chain C, Ar-Nls:importin-Alpha Complex
Length = 427
Score = 37.4 bits (85), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 58/291 (19%), Positives = 109/291 (37%), Gaps = 19/291 (6%)
Query: 42 KIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIESSLLALLNLAVRNER 101
+ E+A + + +S +T++ G + + +L SP+ E ++ AL N+A
Sbjct: 68 QFESAWALTNIASGTSEQTKA-VVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSA 126
Query: 102 NKVKIATAGAIPPLVELLKFQN------GTLREXXXXXXXXXXXXXXXXXXXXXXXXXXL 155
+ + GAI PL+ LL + G LR
Sbjct: 127 FRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPT 186
Query: 156 LVQILHSGSVQGRVDAVTALHYLSTC-KENSSPILDATAVPPLINLLKDCKKYSKFAEKA 214
LV++LH + D+ A+ YL+ E ++ VP L+ LL +
Sbjct: 187 LVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLL-GATELPIVTPAL 245
Query: 215 TALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQL 274
A+ I++ ++E + D G L + ++ + Q +S + R Q
Sbjct: 246 RAIGNIVTGTDEQTQKVI--DAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQ 303
Query: 275 ILKEGAIPGLLRLTVEGTFEAQERAXXXXXXXXXXPQEKRLSSSVLEKIVY 325
++ G +P L+ + + F+ Q+ A S +E+IVY
Sbjct: 304 VVNHGLVPFLVGVLSKADFKTQKEAAWAIT--------NYTSGGTVEQIVY 346
Score = 31.6 bits (70), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 23/103 (22%), Positives = 46/103 (44%), Gaps = 1/103 (0%)
Query: 27 IEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIE 86
+E++ + + +LE++++A + RK++ + AG++ V L + I+
Sbjct: 9 VEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQ 68
Query: 87 -SSLLALLNLAVRNERNKVKIATAGAIPPLVELLKFQNGTLRE 128
S AL N+A + GAIP + LL + + E
Sbjct: 69 FESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISE 111
>pdb|3FEX|C Chain C, Crystal Structure Of The Cbc-Importin Alpha Complex.
pdb|3FEY|C Chain C, Crystal Structure Of The Cbc-Importin Alpha Complex
Length = 467
Score = 37.4 bits (85), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 57/291 (19%), Positives = 108/291 (37%), Gaps = 19/291 (6%)
Query: 42 KIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIESSLLALLNLAVRNER 101
+ E+A + + +S +T++ G + + +L SP+ E ++ AL N+A
Sbjct: 69 QFESAWALTNIASGTSEQTKA-VVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSV 127
Query: 102 NKVKIATAGAIPPLVELLKFQN------GTLREXXXXXXXXXXXXXXXXXXXXXXXXXXL 155
+ + GA+ PL+ LL + G LR
Sbjct: 128 FRDLVIKYGAVDPLLALLAVPDMSSLACGYLRNLTWTLSNLCRNKNPAPPIDAVEQILPT 187
Query: 156 LVQILHSGSVQGRVDAVTALHYLSTC-KENSSPILDATAVPPLINLLKDCKKYSKFAEKA 214
LV++LH + D A+ YL+ E ++ VP L+ LL +
Sbjct: 188 LVRLLHHDDPEVLADTCWAISYLTDGPNERIGMVVKTGVVPQLVKLLG-ASELPIVTPAL 246
Query: 215 TALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQL 274
A+ I++ ++E + D G L + ++ + Q +S + R Q
Sbjct: 247 RAIGNIVTGTDEQTQVVI--DAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQ 304
Query: 275 ILKEGAIPGLLRLTVEGTFEAQERAXXXXXXXXXXPQEKRLSSSVLEKIVY 325
++ G +P L+ + + F+ Q+ A S +E+IVY
Sbjct: 305 VVNHGLVPFLVSVLSKADFKTQKEAVWAVT--------NYTSGGTVEQIVY 347
>pdb|3L3Q|A Chain A, Mouse Importin Alpha-Peptm Nls Peptide Complex
Length = 427
Score = 37.4 bits (85), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 58/291 (19%), Positives = 109/291 (37%), Gaps = 19/291 (6%)
Query: 42 KIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIESSLLALLNLAVRNER 101
+ E+A + + +S +T++ G + + +L SP+ E ++ AL N+A
Sbjct: 67 QFESAWALTNIASGTSEQTKA-VVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSA 125
Query: 102 NKVKIATAGAIPPLVELLKFQN------GTLREXXXXXXXXXXXXXXXXXXXXXXXXXXL 155
+ + GAI PL+ LL + G LR
Sbjct: 126 FRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPT 185
Query: 156 LVQILHSGSVQGRVDAVTALHYLSTC-KENSSPILDATAVPPLINLLKDCKKYSKFAEKA 214
LV++LH + D+ A+ YL+ E ++ VP L+ LL +
Sbjct: 186 LVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLL-GATELPIVTPAL 244
Query: 215 TALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQL 274
A+ I++ ++E + D G L + ++ + Q +S + R Q
Sbjct: 245 RAIGNIVTGTDEQTQKVI--DAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQ 302
Query: 275 ILKEGAIPGLLRLTVEGTFEAQERAXXXXXXXXXXPQEKRLSSSVLEKIVY 325
++ G +P L+ + + F+ Q+ A S +E+IVY
Sbjct: 303 VVNHGLVPFLVGVLSKADFKTQKEAAWAIT--------NYTSGGTVEQIVY 345
Score = 31.6 bits (70), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 23/103 (22%), Positives = 46/103 (44%), Gaps = 1/103 (0%)
Query: 27 IEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIE 86
+E++ + + +LE++++A + RK++ + AG++ V L + I+
Sbjct: 8 VEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQ 67
Query: 87 -SSLLALLNLAVRNERNKVKIATAGAIPPLVELLKFQNGTLRE 128
S AL N+A + GAIP + LL + + E
Sbjct: 68 FESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISE 110
>pdb|1Y2A|C Chain C, Structure Of Mammalian Importin Bound To The Non-Classical
Plscr1-Nls
Length = 428
Score = 37.4 bits (85), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 58/291 (19%), Positives = 109/291 (37%), Gaps = 19/291 (6%)
Query: 42 KIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIESSLLALLNLAVRNER 101
+ E+A + + +S +T++ G + + +L SP+ E ++ AL N+A
Sbjct: 68 QFESAWALTNIASGTSEQTKA-VVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSA 126
Query: 102 NKVKIATAGAIPPLVELLKFQN------GTLREXXXXXXXXXXXXXXXXXXXXXXXXXXL 155
+ + GAI PL+ LL + G LR
Sbjct: 127 FRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPT 186
Query: 156 LVQILHSGSVQGRVDAVTALHYLSTC-KENSSPILDATAVPPLINLLKDCKKYSKFAEKA 214
LV++LH + D+ A+ YL+ E ++ VP L+ LL +
Sbjct: 187 LVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLL-GATELPIVTPAL 245
Query: 215 TALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQL 274
A+ I++ ++E + D G L + ++ + Q +S + R Q
Sbjct: 246 RAIGNIVTGTDEQTQKVI--DAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQ 303
Query: 275 ILKEGAIPGLLRLTVEGTFEAQERAXXXXXXXXXXPQEKRLSSSVLEKIVY 325
++ G +P L+ + + F+ Q+ A S +E+IVY
Sbjct: 304 VVNHGLVPFLVGVLSKADFKTQKEAAWAIT--------NYTSGGTVEQIVY 346
Score = 31.6 bits (70), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 23/103 (22%), Positives = 46/103 (44%), Gaps = 1/103 (0%)
Query: 27 IEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIE 86
+E++ + + +LE++++A + RK++ + AG++ V L + I+
Sbjct: 9 VEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQ 68
Query: 87 -SSLLALLNLAVRNERNKVKIATAGAIPPLVELLKFQNGTLRE 128
S AL N+A + GAIP + LL + + E
Sbjct: 69 FESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISE 111
>pdb|3TPM|A Chain A, Crystal Structure Of Mal Rpel Domain In Complex With
Importin-Alpha
Length = 422
Score = 37.4 bits (85), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 58/291 (19%), Positives = 109/291 (37%), Gaps = 19/291 (6%)
Query: 42 KIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIESSLLALLNLAVRNER 101
+ E+A + + +S +T++ G + + +L SP+ E ++ AL N+A
Sbjct: 63 QFESAWALTNIASGTSEQTKA-VVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSA 121
Query: 102 NKVKIATAGAIPPLVELLKFQN------GTLREXXXXXXXXXXXXXXXXXXXXXXXXXXL 155
+ + GAI PL+ LL + G LR
Sbjct: 122 FRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPT 181
Query: 156 LVQILHSGSVQGRVDAVTALHYLSTC-KENSSPILDATAVPPLINLLKDCKKYSKFAEKA 214
LV++LH + D+ A+ YL+ E ++ VP L+ LL +
Sbjct: 182 LVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLL-GATELPIVTPAL 240
Query: 215 TALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQL 274
A+ I++ ++E + D G L + ++ + Q +S + R Q
Sbjct: 241 RAIGNIVTGTDEQTQKVI--DAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQ 298
Query: 275 ILKEGAIPGLLRLTVEGTFEAQERAXXXXXXXXXXPQEKRLSSSVLEKIVY 325
++ G +P L+ + + F+ Q+ A S +E+IVY
Sbjct: 299 VVNHGLVPFLVGVLSKADFKTQKEAAWAIT--------NYTSGGTVEQIVY 341
Score = 31.6 bits (70), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 23/103 (22%), Positives = 46/103 (44%), Gaps = 1/103 (0%)
Query: 27 IEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIE 86
+E++ + + +LE++++A + RK++ + AG++ V L + I+
Sbjct: 4 VEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQ 63
Query: 87 -SSLLALLNLAVRNERNKVKIATAGAIPPLVELLKFQNGTLRE 128
S AL N+A + GAIP + LL + + E
Sbjct: 64 FESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISE 106
>pdb|3VE6|A Chain A, Crystal Structure Analysis Of Venezuelan Equine
Encephalitis Virus Capsid Protein Nls And Importin Alpha
Length = 426
Score = 37.4 bits (85), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 58/291 (19%), Positives = 109/291 (37%), Gaps = 19/291 (6%)
Query: 42 KIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIESSLLALLNLAVRNER 101
+ E+A + + +S +T++ G + + +L SP+ E ++ AL N+A
Sbjct: 67 QFESAWALTNIASGTSEQTKA-VVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSA 125
Query: 102 NKVKIATAGAIPPLVELLKFQN------GTLREXXXXXXXXXXXXXXXXXXXXXXXXXXL 155
+ + GAI PL+ LL + G LR
Sbjct: 126 FRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPT 185
Query: 156 LVQILHSGSVQGRVDAVTALHYLSTC-KENSSPILDATAVPPLINLLKDCKKYSKFAEKA 214
LV++LH + D+ A+ YL+ E ++ VP L+ LL +
Sbjct: 186 LVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLL-GATELPIVTPAL 244
Query: 215 TALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQL 274
A+ I++ ++E + D G L + ++ + Q +S + R Q
Sbjct: 245 RAIGNIVTGTDEQTQKVI--DAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQ 302
Query: 275 ILKEGAIPGLLRLTVEGTFEAQERAXXXXXXXXXXPQEKRLSSSVLEKIVY 325
++ G +P L+ + + F+ Q+ A S +E+IVY
Sbjct: 303 VVNHGLVPFLVGVLSKADFKTQKEAAWAIT--------NYTSGGTVEQIVY 345
Score = 31.6 bits (70), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 23/103 (22%), Positives = 46/103 (44%), Gaps = 1/103 (0%)
Query: 27 IEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIE 86
+E++ + + +LE++++A + RK++ + AG++ V L + I+
Sbjct: 8 VEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQ 67
Query: 87 -SSLLALLNLAVRNERNKVKIATAGAIPPLVELLKFQNGTLRE 128
S AL N+A + GAIP + LL + + E
Sbjct: 68 FESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISE 110
>pdb|2C1M|A Chain A, Nup50:importin-Alpha Complex
Length = 424
Score = 37.4 bits (85), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 58/291 (19%), Positives = 109/291 (37%), Gaps = 19/291 (6%)
Query: 42 KIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIESSLLALLNLAVRNER 101
+ E+A + + +S +T++ G + + +L SP+ E ++ AL N+A
Sbjct: 63 QFESAWALTNIASGTSEQTKA-VVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSA 121
Query: 102 NKVKIATAGAIPPLVELLKFQN------GTLREXXXXXXXXXXXXXXXXXXXXXXXXXXL 155
+ + GAI PL+ LL + G LR
Sbjct: 122 FRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPT 181
Query: 156 LVQILHSGSVQGRVDAVTALHYLSTC-KENSSPILDATAVPPLINLLKDCKKYSKFAEKA 214
LV++LH + D+ A+ YL+ E ++ VP L+ LL +
Sbjct: 182 LVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLL-GATELPIVTPAL 240
Query: 215 TALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQL 274
A+ I++ ++E + D G L + ++ + Q +S + R Q
Sbjct: 241 RAIGNIVTGTDEQTQKVI--DAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQ 298
Query: 275 ILKEGAIPGLLRLTVEGTFEAQERAXXXXXXXXXXPQEKRLSSSVLEKIVY 325
++ G +P L+ + + F+ Q+ A S +E+IVY
Sbjct: 299 VVNHGLVPFLVGVLSKADFKTQKEAAWAIT--------NYTSGGTVEQIVY 341
Score = 31.6 bits (70), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 23/103 (22%), Positives = 46/103 (44%), Gaps = 1/103 (0%)
Query: 27 IEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIE 86
+E++ + + +LE++++A + RK++ + AG++ V L + I+
Sbjct: 4 VEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQ 63
Query: 87 -SSLLALLNLAVRNERNKVKIATAGAIPPLVELLKFQNGTLRE 128
S AL N+A + GAIP + LL + + E
Sbjct: 64 FESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISE 106
>pdb|4DB6|A Chain A, Designed Armadillo Repeat Protein (Yiiim3aii)
Length = 210
Score = 37.0 bits (84), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 31/57 (54%)
Query: 67 AGVVQPLVLMLVSPNLDAIESSLLALLNLAVRNERNKVKIATAGAIPPLVELLKFQN 123
AG + LV +L SPN ++ +L AL N+A + AGA+P LV+LL N
Sbjct: 53 AGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPN 109
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 44/161 (27%), Positives = 66/161 (40%), Gaps = 3/161 (1%)
Query: 73 LVLMLVSPNLDAIESSLLALLNLAVRNERNKVKIATAGAIPPLVELLKFQN-GTLREXXX 131
+V L SP+ ++S+L L +A + AGA+P LV+LL N L+E
Sbjct: 17 MVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALW 76
Query: 132 XXXXXXXXXXXXXXXXXXXXXXXLLVQILHSGSVQGRVDAVTALHYL-STCKENSSPILD 190
LVQ+L S + Q +A+ AL + S E ++D
Sbjct: 77 ALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVID 136
Query: 191 ATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAI 231
A A+P L+ LL + E AL I S E + A+
Sbjct: 137 AGALPALVQLLSSPNEQ-ILQEALWALSNIASGGNEQKQAV 176
>pdb|4DB9|A Chain A, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|B Chain B, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|C Chain C, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|D Chain D, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|E Chain E, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|F Chain F, Designed Armadillo Repeat Protein (Yiiim3aiii)
Length = 210
Score = 36.6 bits (83), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 31/57 (54%)
Query: 67 AGVVQPLVLMLVSPNLDAIESSLLALLNLAVRNERNKVKIATAGAIPPLVELLKFQN 123
AG + LV +L SPN ++ +L AL N+A + AGA+P LV+LL N
Sbjct: 53 AGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPN 109
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 44/161 (27%), Positives = 66/161 (40%), Gaps = 3/161 (1%)
Query: 73 LVLMLVSPNLDAIESSLLALLNLAVRNERNKVKIATAGAIPPLVELLKFQN-GTLREXXX 131
+V L SP+ ++S+L L +A + AGA+P LV+LL N L+E
Sbjct: 17 MVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALW 76
Query: 132 XXXXXXXXXXXXXXXXXXXXXXXLLVQILHSGSVQGRVDAVTALHYL-STCKENSSPILD 190
LVQ+L S + Q +A+ AL + S E ++D
Sbjct: 77 ALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVID 136
Query: 191 ATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAI 231
A A+P L+ LL + E AL I S E + A+
Sbjct: 137 AGALPALVQLLSSPNEQ-ILQEALWALSNIASGGNEQKQAV 176
>pdb|4HXT|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or329
Length = 252
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 53/212 (25%), Positives = 92/212 (43%), Gaps = 4/212 (1%)
Query: 27 IEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIE 86
+E+L L + D ET+ EAARD+ ++ + ++ AG V+ LV +L S + + +
Sbjct: 4 VEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKA-IVDAGGVEVLVKLLTSTDSEVQK 62
Query: 87 SSLLALLNLAVRNERNKVKIATAGAIPPLVELLKFQNGTL-REXXXXXXXXXXXXXXXXX 145
+ AL N+A + I AG + LV+LL + + +E
Sbjct: 63 EAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIK 122
Query: 146 XXXXXXXXXLLVQILHSGSVQGRVDAVTALHYLSTCKENS-SPILDATAVPPLINLLKDC 204
+LV++L S + + +A AL +++ + + I+DA V L+ LL
Sbjct: 123 AIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTST 182
Query: 205 KKYSKFAEKATALLEILSSSEEGRIAITNSDG 236
+ E A AL I S AI ++ G
Sbjct: 183 DSEVQK-EAARALANIASGPTSAIKAIVDAGG 213
>pdb|1CLC|A Chain A, Three-Dimensional Structure Of Endoglucanase D At 1.9
Angstroms Resolution
Length = 639
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 45/99 (45%), Gaps = 9/99 (9%)
Query: 22 RKQALIEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVV--QPLVLML-- 77
+ AL++ + D L L T R + +L T + G V Q ++L +
Sbjct: 409 KNPALVQSIKDSL----LSTADSIVRTSQNHGYGRTLGTTYYWGCNGTVVRQTMILQVAN 464
Query: 78 -VSPNLDAIESSLLALLNLAVRNERNKVKIATAGAIPPL 115
+SPN D + ++L A+ ++ RN N+ + G PP+
Sbjct: 465 KISPNNDYVNAALDAISHVFGRNYYNRSYVTGLGINPPM 503
>pdb|2YNS|A Chain A, Rimp_alpha_b54nls
pdb|2YNS|B Chain B, Rimp_alpha_b54nls
pdb|4B8O|A Chain A, Rimp_alpha_sv40tagnls
pdb|4B8P|A Chain A, Rimp_alpha_a89nls
pdb|4B8P|B Chain B, Rimp_alpha_a89nls
Length = 490
Score = 32.0 bits (71), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 41/85 (48%), Gaps = 12/85 (14%)
Query: 47 RDIRKVVKKSSLKTRSEFAA-----------AGVVQPLVLMLVSPNLDAIESSLLALLNL 95
++++K +KK + T S A AG++ PLV +L + D + + A+ N
Sbjct: 301 QNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQTAEFDIKKEAAWAISNA 360
Query: 96 AVRNERNKVK-IATAGAIPPLVELL 119
+++K + + G I PL +LL
Sbjct: 361 TSGGSHDQIKYLVSEGCIKPLCDLL 385
Score = 29.6 bits (65), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 39/92 (42%), Gaps = 1/92 (1%)
Query: 38 DLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIE-SSLLALLNLA 96
D ++EA RK++ E +GVV V L + ++ + AL N+A
Sbjct: 49 DNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIA 108
Query: 97 VRNERNKVKIATAGAIPPLVELLKFQNGTLRE 128
N + GA+P V+LL + +RE
Sbjct: 109 SGTSENTKVVIDHGAVPIFVKLLGSSSDDVRE 140
>pdb|2JDQ|A Chain A, C-Terminal Domain Of Influenza A Virus Polymerase Pb2
Subunit In Complex With Human Importin Alpha5
pdb|2JDQ|B Chain B, C-Terminal Domain Of Influenza A Virus Polymerase Pb2
Subunit In Complex With Human Importin Alpha5
Length = 450
Score = 32.0 bits (71), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 41/83 (49%), Gaps = 3/83 (3%)
Query: 42 KIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNL-DAIESSLLALLNLAVRNE 100
+ E+A + + +SL+TR A V P+ + L+S D E ++ AL N+A +
Sbjct: 82 QFESAWVLTNIASGNSLQTRIVIQAGAV--PIFIELLSSEFEDVQEQAVWALGNIAGDST 139
Query: 101 RNKVKIATAGAIPPLVELLKFQN 123
+ + +PPL++L QN
Sbjct: 140 MCRDYVLDCNILPPLLQLFSKQN 162
>pdb|1WA5|B Chain B, Crystal Structure Of The Exportin Cse1p Complexed With Its
Cargo (Kap60p) And Rangtp
Length = 530
Score = 32.0 bits (71), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 38/76 (50%), Gaps = 1/76 (1%)
Query: 45 AARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIESSLLALLNLAVRNERNKV 104
A R + +V + L+T+ AGV+ L L+L SP + + + + N+ N
Sbjct: 319 ALRAVGNIVTGNDLQTQV-VINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQ 377
Query: 105 KIATAGAIPPLVELLK 120
+ A IPPLV+LL+
Sbjct: 378 AVIDANLIPPLVKLLE 393
>pdb|2C1T|A Chain A, Structure Of The Kap60p:nup2 Complex
pdb|2C1T|B Chain B, Structure Of The Kap60p:nup2 Complex
Length = 454
Score = 32.0 bits (71), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 38/76 (50%), Gaps = 1/76 (1%)
Query: 45 AARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIESSLLALLNLAVRNERNKV 104
A R + +V + L+T+ AGV+ L L+L SP + + + + N+ N
Sbjct: 232 ALRAVGNIVTGNDLQTQV-VINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQ 290
Query: 105 KIATAGAIPPLVELLK 120
+ A IPPLV+LL+
Sbjct: 291 AVIDANLIPPLVKLLE 306
>pdb|1UN0|A Chain A, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In
Complex With A Nup2p N-Terminal Fragment
pdb|1UN0|B Chain B, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In
Complex With A Nup2p N-Terminal Fragment
Length = 443
Score = 32.0 bits (71), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 38/76 (50%), Gaps = 1/76 (1%)
Query: 45 AARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIESSLLALLNLAVRNERNKV 104
A R + +V + L+T+ AGV+ L L+L SP + + + + N+ N
Sbjct: 232 ALRAVGNIVTGNDLQTQV-VINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQ 290
Query: 105 KIATAGAIPPLVELLK 120
+ A IPPLV+LL+
Sbjct: 291 AVIDANLIPPLVKLLE 306
>pdb|3TJ3|A Chain A, Structure Of Importin A5 Bound To The N-Terminus Of Nup50
pdb|3TJ3|B Chain B, Structure Of Importin A5 Bound To The N-Terminus Of Nup50
Length = 447
Score = 32.0 bits (71), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 41/83 (49%), Gaps = 3/83 (3%)
Query: 42 KIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNL-DAIESSLLALLNLAVRNE 100
+ E+A + + +SL+TR A V P+ + L+S D E ++ AL N+A +
Sbjct: 79 QFESAWVLTNIASGNSLQTRIVIQAGAV--PIFIELLSSEFEDVQEQAVWALGNIAGDST 136
Query: 101 RNKVKIATAGAIPPLVELLKFQN 123
+ + +PPL++L QN
Sbjct: 137 MCRDYVLDCNILPPLLQLFSKQN 159
>pdb|1EE5|A Chain A, Yeast Karyopherin (Importin) Alpha In A Complex With A
Nucleoplasmin Nls Peptide
Length = 424
Score = 31.6 bits (70), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 38/76 (50%), Gaps = 1/76 (1%)
Query: 45 AARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIESSLLALLNLAVRNERNKV 104
A R + +V + L+T+ AGV+ L L+L SP + + + + N+ N
Sbjct: 233 ALRAVGNIVTGNDLQTQV-VINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQ 291
Query: 105 KIATAGAIPPLVELLK 120
+ A IPPLV+LL+
Sbjct: 292 AVIDANLIPPLVKLLE 307
>pdb|1EE4|A Chain A, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In
A Complex With A C-Myc Nls Peptide
pdb|1EE4|B Chain B, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In
A Complex With A C-Myc Nls Peptide
Length = 423
Score = 31.6 bits (70), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 38/76 (50%), Gaps = 1/76 (1%)
Query: 45 AARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIESSLLALLNLAVRNERNKV 104
A R + +V + L+T+ AGV+ L L+L SP + + + + N+ N
Sbjct: 233 ALRAVGNIVTGNDLQTQV-VINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQ 291
Query: 105 KIATAGAIPPLVELLK 120
+ A IPPLV+LL+
Sbjct: 292 AVIDANLIPPLVKLLE 307
>pdb|1BK5|A Chain A, Karyopherin Alpha From Saccharomyces Cerevisiae
pdb|1BK5|B Chain B, Karyopherin Alpha From Saccharomyces Cerevisiae
Length = 422
Score = 31.6 bits (70), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 38/76 (50%), Gaps = 1/76 (1%)
Query: 45 AARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIESSLLALLNLAVRNERNKV 104
A R + +V + L+T+ AGV+ L L+L SP + + + + N+ N
Sbjct: 231 ALRAVGNIVTGNDLQTQV-VINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQ 289
Query: 105 KIATAGAIPPLVELLK 120
+ A IPPLV+LL+
Sbjct: 290 AVIDANLIPPLVKLLE 305
>pdb|1BK6|A Chain A, Karyopherin Alpha (Yeast) + Sv40 T Antigen Nls
pdb|1BK6|B Chain B, Karyopherin Alpha (Yeast) + Sv40 T Antigen Nls
Length = 422
Score = 31.6 bits (70), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 38/76 (50%), Gaps = 1/76 (1%)
Query: 45 AARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIESSLLALLNLAVRNERNKV 104
A R + +V + L+T+ AGV+ L L+L SP + + + + N+ N
Sbjct: 231 ALRAVGNIVTGNDLQTQV-VINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQ 289
Query: 105 KIATAGAIPPLVELLK 120
+ A IPPLV+LL+
Sbjct: 290 AVIDANLIPPLVKLLE 305
>pdb|4B8J|A Chain A, Rimp_alpha1a
Length = 528
Score = 31.2 bits (69), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 41/85 (48%), Gaps = 12/85 (14%)
Query: 47 RDIRKVVKKSSLKTRSEFAA-----------AGVVQPLVLMLVSPNLDAIESSLLALLNL 95
++++K +KK + T S A AG++ PLV +L + D + + A+ N
Sbjct: 339 QNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQTAEFDIKKEAAWAISNA 398
Query: 96 AVRNERNKVK-IATAGAIPPLVELL 119
+++K + + G I PL +LL
Sbjct: 399 TSGGSHDQIKYLVSEGCIKPLCDLL 423
Score = 29.3 bits (64), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 39/92 (42%), Gaps = 1/92 (1%)
Query: 38 DLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIE-SSLLALLNLA 96
D ++EA RK++ E +GVV V L + ++ + AL N+A
Sbjct: 87 DNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIA 146
Query: 97 VRNERNKVKIATAGAIPPLVELLKFQNGTLRE 128
N + GA+P V+LL + +RE
Sbjct: 147 SGTSENTKVVIDHGAVPIFVKLLGSSSDDVRE 178
>pdb|1KZ7|A Chain A, Crystal Structure Of The DhPH FRAGMENT OF MURINE DBS IN
Complex With The Placental Isoform Of Human Cdc42
pdb|1KZ7|C Chain C, Crystal Structure Of The DhPH FRAGMENT OF MURINE DBS IN
Complex With The Placental Isoform Of Human Cdc42
Length = 353
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 31/69 (44%), Gaps = 10/69 (14%)
Query: 200 LLKDCKKYSKFAEKATALLEILSS---------SEEGRIAITNSDGGILTLVETVEDGSL 250
LLK+ KYSK E A L E LSS IAIT DG + L + + GS
Sbjct: 157 LLKEXLKYSKHCEGAEDLQEALSSILGILKAVNDSXHLIAITGYDGNLGDLGKLLXQGSF 216
Query: 251 -VSTQHAVG 258
V T H G
Sbjct: 217 SVWTDHKKG 225
>pdb|1RJ2|A Chain A, Crystal Structure Of The DhPH FRAGMENT OF DBS WITHOUT
Bound Gtpase
pdb|1RJ2|D Chain D, Crystal Structure Of The DhPH FRAGMENT OF DBS WITHOUT
Bound Gtpase
pdb|1RJ2|G Chain G, Crystal Structure Of The DhPH FRAGMENT OF DBS WITHOUT
Bound Gtpase
pdb|1RJ2|J Chain J, Crystal Structure Of The DhPH FRAGMENT OF DBS WITHOUT
Bound Gtpase
Length = 353
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 31/69 (44%), Gaps = 10/69 (14%)
Query: 200 LLKDCKKYSKFAEKATALLEILSS---------SEEGRIAITNSDGGILTLVETVEDGSL 250
LLK+ KYSK E A L E LSS IAIT DG + L + + GS
Sbjct: 157 LLKEMLKYSKHCEGAEDLQEALSSILGILKAVNDSMHLIAITGYDGNLGDLGKLLMQGSF 216
Query: 251 -VSTQHAVG 258
V T H G
Sbjct: 217 SVWTDHKKG 225
>pdb|1LB1|A Chain A, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|C Chain C, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|E Chain E, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|G Chain G, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
Length = 353
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 31/69 (44%), Gaps = 10/69 (14%)
Query: 200 LLKDCKKYSKFAEKATALLEILSS---------SEEGRIAITNSDGGILTLVETVEDGSL 250
LLK+ KYSK E A L E LSS IAIT DG + L + + GS
Sbjct: 157 LLKEMLKYSKHCEGAEDLQEALSSILGILKAVNDSMHLIAITGYDGNLGDLGKLLMQGSF 216
Query: 251 -VSTQHAVG 258
V T H G
Sbjct: 217 SVWTDHKKG 225
>pdb|1KZG|A Chain A, Dbscdc42(Y889f)
pdb|1KZG|C Chain C, Dbscdc42(Y889f)
Length = 353
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 31/69 (44%), Gaps = 10/69 (14%)
Query: 200 LLKDCKKYSKFAEKATALLEILSS---------SEEGRIAITNSDGGILTLVETVEDGSL 250
LLK+ KYSK E A L E LSS IAIT DG + L + + GS
Sbjct: 157 LLKEMLKYSKHCEGAEDLQEALSSILGILKAVNDSMHLIAITGYDGNLGDLGKLLMQGSF 216
Query: 251 -VSTQHAVG 258
V T H G
Sbjct: 217 SVWTDHKKG 225
>pdb|1BBH|A Chain A, Atomic Structure Of A Cytochrome C' With An Unusual
Ligand- Controlled Dimer Dissociation At 1.8 Angstroms
Resolution
pdb|1BBH|B Chain B, Atomic Structure Of A Cytochrome C' With An Unusual
Ligand- Controlled Dimer Dissociation At 1.8 Angstroms
Resolution
Length = 131
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 19/37 (51%)
Query: 236 GGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYR 272
G TL E G + + A G + + C+SC +KYR
Sbjct: 93 GAANTLAEVAATGEAEAVKTAFGDVGAACKSCHEKYR 129
>pdb|3L6X|A Chain A, Crystal Structure Of P120 Catenin In Complex With
E-Cadherin
pdb|3L6Y|A Chain A, Crystal Structure Of P120 Catenin In Complex With
E-cadherin
pdb|3L6Y|C Chain C, Crystal Structure Of P120 Catenin In Complex With
E-cadherin
pdb|3L6Y|E Chain E, Crystal Structure Of P120 Catenin In Complex With
E-cadherin
Length = 584
Score = 28.9 bits (63), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Query: 72 PLVLMLVSPNLDAIESSLLALL-NLAVRNERNKVKIATAGAIPPLVELL 119
P V+ ++ LDA++S+ A L +L RN++ K + IP LV LL
Sbjct: 51 PEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLL 99
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.129 0.342
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,830,445
Number of Sequences: 62578
Number of extensions: 250079
Number of successful extensions: 792
Number of sequences better than 100.0: 43
Number of HSP's better than 100.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 656
Number of HSP's gapped (non-prelim): 110
length of query: 375
length of database: 14,973,337
effective HSP length: 100
effective length of query: 275
effective length of database: 8,715,537
effective search space: 2396772675
effective search space used: 2396772675
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 52 (24.6 bits)