Query 017249
Match_columns 375
No_of_seqs 235 out of 2013
Neff 9.8
Searched_HMMs 46136
Date Fri Mar 29 06:55:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017249.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017249hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0166 Karyopherin (importin) 100.0 2.9E-36 6.4E-41 279.9 28.9 321 24-351 108-437 (514)
2 PLN03200 cellulose synthase-in 100.0 4.9E-33 1.1E-37 292.9 37.3 345 14-365 393-781 (2102)
3 COG5064 SRP1 Karyopherin (impo 100.0 9.1E-35 2E-39 251.8 19.0 325 20-351 109-444 (526)
4 PLN03200 cellulose synthase-in 100.0 1.3E-31 2.8E-36 282.3 36.4 331 13-350 434-811 (2102)
5 KOG4224 Armadillo repeat prote 100.0 1.6E-32 3.5E-37 239.8 18.7 327 13-349 114-445 (550)
6 KOG0166 Karyopherin (importin) 100.0 9.1E-31 2E-35 243.4 28.4 322 27-354 68-397 (514)
7 KOG4224 Armadillo repeat prote 100.0 2E-30 4.2E-35 226.8 25.7 327 15-351 157-494 (550)
8 COG5064 SRP1 Karyopherin (impo 100.0 2.5E-29 5.5E-34 218.1 16.9 318 25-350 71-398 (526)
9 PF05804 KAP: Kinesin-associat 99.9 3.1E-22 6.8E-27 196.3 34.0 332 12-353 277-652 (708)
10 PF05804 KAP: Kinesin-associat 99.9 1.4E-19 3.1E-24 177.8 31.1 297 28-333 253-591 (708)
11 KOG1048 Neural adherens juncti 99.9 3.3E-20 7.1E-25 178.3 22.9 332 23-356 231-647 (717)
12 KOG2122 Beta-catenin-binding p 99.9 6.9E-21 1.5E-25 190.2 16.8 269 40-312 312-605 (2195)
13 KOG4199 Uncharacterized conser 99.8 1.1E-18 2.4E-23 151.9 23.2 291 16-310 136-446 (461)
14 KOG4199 Uncharacterized conser 99.8 2.1E-17 4.6E-22 144.0 27.6 315 24-348 103-442 (461)
15 KOG1048 Neural adherens juncti 99.7 2.8E-16 6E-21 151.5 22.1 327 14-349 264-683 (717)
16 PF04826 Arm_2: Armadillo-like 99.7 1.7E-15 3.8E-20 132.7 20.8 195 22-224 9-206 (254)
17 KOG2122 Beta-catenin-binding p 99.7 1.4E-15 3.1E-20 152.8 21.0 335 12-351 222-602 (2195)
18 KOG4500 Rho/Rac GTPase guanine 99.7 4.1E-14 8.8E-19 127.4 25.5 308 22-332 84-416 (604)
19 PF10508 Proteasom_PSMB: Prote 99.7 1.4E-13 3E-18 133.8 29.6 320 23-351 75-421 (503)
20 PF10508 Proteasom_PSMB: Prote 99.7 1.9E-13 4.2E-18 132.8 29.7 317 28-353 41-369 (503)
21 KOG1222 Kinesin associated pro 99.6 2.7E-13 5.9E-18 123.7 26.4 307 13-333 292-605 (791)
22 PF04826 Arm_2: Armadillo-like 99.6 1.1E-14 2.3E-19 127.7 16.0 198 106-310 8-207 (254)
23 PRK09687 putative lyase; Provi 99.6 7.3E-13 1.6E-17 118.8 22.0 265 16-347 14-279 (280)
24 KOG4500 Rho/Rac GTPase guanine 99.5 2.7E-12 5.8E-17 115.9 20.7 307 37-349 54-389 (604)
25 cd00020 ARM Armadillo/beta-cat 99.5 9.4E-13 2E-17 103.1 13.6 118 63-180 2-120 (120)
26 cd00020 ARM Armadillo/beta-cat 99.5 1.4E-12 3.1E-17 102.0 14.3 118 21-139 3-120 (120)
27 PRK09687 putative lyase; Provi 99.4 3.4E-11 7.4E-16 108.0 21.8 225 69-349 24-249 (280)
28 cd00256 VATPase_H VATPase_H, r 99.4 3.8E-11 8.2E-16 112.1 22.5 279 25-306 101-423 (429)
29 PRK13800 putative oxidoreducta 99.3 6.2E-10 1.3E-14 115.9 26.9 184 23-263 619-802 (897)
30 PRK13800 putative oxidoreducta 99.3 1E-09 2.2E-14 114.3 28.0 249 21-347 648-896 (897)
31 KOG1222 Kinesin associated pro 99.3 4.6E-10 1E-14 103.0 21.4 289 16-312 336-667 (791)
32 PF03224 V-ATPase_H_N: V-ATPas 99.3 1.4E-10 3E-15 106.5 16.7 254 47-302 32-308 (312)
33 KOG1293 Proteins containing ar 99.3 2.5E-09 5.4E-14 101.7 24.3 318 29-351 13-534 (678)
34 KOG2160 Armadillo/beta-catenin 99.2 2.6E-09 5.7E-14 95.5 21.8 184 36-223 94-282 (342)
35 cd00256 VATPase_H VATPase_H, r 99.2 1.4E-08 3.1E-13 95.1 27.4 319 24-349 52-424 (429)
36 KOG3678 SARM protein (with ste 99.2 1E-09 2.2E-14 100.4 18.7 276 17-312 172-456 (832)
37 KOG0946 ER-Golgi vesicle-tethe 99.2 1E-08 2.2E-13 99.2 24.5 282 24-310 21-348 (970)
38 PF03224 V-ATPase_H_N: V-ATPas 99.2 6.4E-10 1.4E-14 102.0 13.9 215 27-246 57-292 (312)
39 KOG2759 Vacuolar H+-ATPase V1 99.2 3.2E-09 7E-14 96.2 17.7 277 27-308 116-438 (442)
40 KOG2023 Nuclear transport rece 99.1 3.1E-09 6.7E-14 101.0 17.0 307 24-351 127-506 (885)
41 KOG2973 Uncharacterized conser 99.1 1.1E-08 2.5E-13 89.1 18.7 279 70-357 5-322 (353)
42 KOG1293 Proteins containing ar 99.1 4.2E-08 9.1E-13 93.5 24.0 118 191-311 418-536 (678)
43 KOG0168 Putative ubiquitin fus 99.1 1.5E-08 3.2E-13 98.8 21.0 257 26-290 168-437 (1051)
44 KOG2171 Karyopherin (importin) 99.1 4.6E-08 1E-12 98.8 24.2 316 25-351 118-462 (1075)
45 PF01602 Adaptin_N: Adaptin N 99.1 6.4E-08 1.4E-12 95.7 24.9 292 25-350 42-333 (526)
46 PF01602 Adaptin_N: Adaptin N 99.0 8.2E-08 1.8E-12 95.0 24.1 289 26-351 80-370 (526)
47 KOG0168 Putative ubiquitin fus 99.0 6.5E-09 1.4E-13 101.2 15.5 221 19-246 205-436 (1051)
48 KOG2160 Armadillo/beta-catenin 99.0 4.3E-08 9.4E-13 87.8 17.2 186 79-266 94-283 (342)
49 PTZ00429 beta-adaptin; Provisi 99.0 1.1E-06 2.3E-11 88.6 29.0 261 26-311 69-329 (746)
50 KOG2171 Karyopherin (importin) 98.9 3.2E-06 6.9E-11 85.9 29.7 312 27-349 161-503 (1075)
51 KOG2973 Uncharacterized conser 98.9 1.6E-06 3.5E-11 75.9 21.9 273 27-311 5-318 (353)
52 PTZ00429 beta-adaptin; Provisi 98.8 8.8E-06 1.9E-10 82.2 28.6 308 23-365 30-344 (746)
53 KOG0946 ER-Golgi vesicle-tethe 98.7 3.2E-05 6.9E-10 75.7 27.0 284 24-310 60-401 (970)
54 KOG4646 Uncharacterized conser 98.7 4.2E-07 9.2E-12 69.8 11.4 135 21-158 12-148 (173)
55 PF14664 RICTOR_N: Rapamycin-i 98.7 3.1E-05 6.8E-10 72.2 25.8 319 18-352 18-366 (371)
56 KOG2759 Vacuolar H+-ATPase V1 98.6 3.7E-05 8.1E-10 70.3 24.2 316 25-349 65-437 (442)
57 KOG4646 Uncharacterized conser 98.6 3.3E-07 7.1E-12 70.5 8.9 127 68-195 16-144 (173)
58 TIGR02270 conserved hypothetic 98.6 2.9E-05 6.2E-10 73.3 23.8 242 25-350 54-296 (410)
59 KOG1789 Endocytosis protein RM 98.6 2E-05 4.3E-10 79.2 21.9 325 24-354 1374-1887(2235)
60 KOG2023 Nuclear transport rece 98.5 5.1E-06 1.1E-10 79.7 15.8 248 69-327 129-443 (885)
61 TIGR02270 conserved hypothetic 98.5 2.8E-05 6E-10 73.5 19.9 212 26-310 87-298 (410)
62 KOG3678 SARM protein (with ste 98.5 1.6E-05 3.4E-10 73.5 17.4 264 60-348 172-450 (832)
63 PF05536 Neurochondrin: Neuroc 98.5 1.4E-05 3E-10 78.5 18.3 235 69-307 6-260 (543)
64 KOG4413 26S proteasome regulat 98.5 3.9E-05 8.3E-10 68.0 18.9 277 27-310 84-379 (524)
65 KOG1241 Karyopherin (importin) 98.4 4.5E-05 9.7E-10 74.5 20.9 318 26-355 130-482 (859)
66 PF05536 Neurochondrin: Neuroc 98.4 3.2E-05 7E-10 75.9 19.1 236 24-265 4-261 (543)
67 KOG1789 Endocytosis protein RM 98.4 0.00056 1.2E-08 69.3 27.1 317 25-349 1771-2165(2235)
68 PF10165 Ric8: Guanine nucleot 98.4 0.00011 2.3E-09 70.7 21.8 278 46-326 2-358 (446)
69 KOG1059 Vesicle coat complex A 98.4 0.00027 5.9E-09 68.8 23.5 257 23-310 142-404 (877)
70 KOG1242 Protein containing ada 98.3 8.4E-05 1.8E-09 71.3 19.8 306 26-351 135-445 (569)
71 KOG4413 26S proteasome regulat 98.3 6.3E-05 1.4E-09 66.7 17.4 289 17-311 25-336 (524)
72 PF10165 Ric8: Guanine nucleot 98.3 0.00017 3.8E-09 69.3 22.2 255 12-267 9-339 (446)
73 PF00514 Arm: Armadillo/beta-c 98.3 1.5E-06 3.3E-11 53.7 4.8 40 58-97 2-41 (41)
74 KOG0212 Uncharacterized conser 98.3 2.9E-05 6.3E-10 73.3 15.3 322 23-360 82-416 (675)
75 COG1413 FOG: HEAT repeat [Ener 98.3 0.00013 2.9E-09 67.8 20.1 191 68-310 43-244 (335)
76 PF00514 Arm: Armadillo/beta-c 98.3 1.7E-06 3.8E-11 53.4 4.7 40 99-138 1-40 (41)
77 COG5369 Uncharacterized conser 98.3 2.2E-05 4.9E-10 73.7 13.8 263 42-307 406-740 (743)
78 KOG1241 Karyopherin (importin) 98.3 0.00045 9.7E-09 67.7 22.7 319 25-354 172-534 (859)
79 KOG2734 Uncharacterized conser 98.2 0.0012 2.5E-08 61.1 23.7 240 45-288 104-370 (536)
80 KOG0212 Uncharacterized conser 98.2 0.00043 9.2E-09 65.7 20.4 313 40-363 139-461 (675)
81 PF14664 RICTOR_N: Rapamycin-i 98.1 0.00054 1.2E-08 64.1 20.4 249 49-308 7-269 (371)
82 COG5231 VMA13 Vacuolar H+-ATPa 98.1 0.0004 8.7E-09 61.5 17.6 229 78-308 159-428 (432)
83 KOG2734 Uncharacterized conser 98.1 0.0017 3.8E-08 60.0 21.8 249 14-266 114-401 (536)
84 PF11841 DUF3361: Domain of un 98.1 0.00014 2.9E-09 58.6 12.8 131 145-275 5-141 (160)
85 COG1413 FOG: HEAT repeat [Ener 98.0 0.0013 2.8E-08 61.2 21.0 187 25-265 43-242 (335)
86 KOG1242 Protein containing ada 98.0 0.0019 4E-08 62.3 21.2 231 36-289 227-463 (569)
87 KOG1517 Guanine nucleotide bin 98.0 0.00047 1E-08 69.8 17.6 224 41-267 486-734 (1387)
88 PF13646 HEAT_2: HEAT repeats; 98.0 4.3E-05 9.2E-10 55.9 7.9 86 27-135 1-88 (88)
89 KOG1517 Guanine nucleotide bin 98.0 0.0007 1.5E-08 68.6 18.5 221 129-351 486-733 (1387)
90 KOG1062 Vesicle coat complex A 98.0 0.0051 1.1E-07 60.9 23.8 161 156-328 257-451 (866)
91 KOG1061 Vesicle coat complex A 98.0 0.00038 8.1E-09 68.5 15.9 256 24-305 48-305 (734)
92 PF12348 CLASP_N: CLASP N term 97.9 0.00024 5.1E-09 62.2 12.0 182 35-224 17-207 (228)
93 PF13646 HEAT_2: HEAT repeats; 97.9 6.3E-05 1.4E-09 55.0 7.0 86 70-176 1-88 (88)
94 KOG1059 Vesicle coat complex A 97.8 0.0088 1.9E-07 58.7 21.3 302 24-354 180-494 (877)
95 KOG1060 Vesicle coat complex A 97.7 0.024 5.2E-07 56.3 24.2 142 209-363 302-471 (968)
96 COG5369 Uncharacterized conser 97.7 0.00054 1.2E-08 64.7 12.6 199 85-286 406-615 (743)
97 KOG1061 Vesicle coat complex A 97.7 0.00069 1.5E-08 66.7 13.7 72 25-100 121-192 (734)
98 KOG0213 Splicing factor 3b, su 97.7 0.0021 4.6E-08 63.0 16.7 240 15-267 706-956 (1172)
99 COG5240 SEC21 Vesicle coat com 97.7 0.036 7.9E-07 53.3 24.3 300 26-351 224-556 (898)
100 PF12348 CLASP_N: CLASP N term 97.7 0.00033 7.2E-09 61.3 10.3 184 78-267 17-208 (228)
101 COG5215 KAP95 Karyopherin (imp 97.7 0.0081 1.8E-07 57.5 19.6 298 39-354 148-483 (858)
102 KOG2259 Uncharacterized conser 97.7 0.00015 3.3E-09 69.8 8.2 250 73-348 203-473 (823)
103 smart00185 ARM Armadillo/beta- 97.7 0.00013 2.7E-09 44.8 5.2 40 58-97 2-41 (41)
104 PF09759 Atx10homo_assoc: Spin 97.7 0.0004 8.8E-09 51.6 8.5 67 42-109 3-71 (102)
105 KOG1077 Vesicle coat complex A 97.7 0.0076 1.6E-07 59.0 19.1 259 34-311 120-401 (938)
106 COG5181 HSH155 U2 snRNP splice 97.6 0.02 4.2E-07 55.4 21.3 258 26-311 605-873 (975)
107 smart00185 ARM Armadillo/beta- 97.6 0.0002 4.3E-09 43.9 5.2 39 100-138 2-40 (41)
108 KOG3036 Protein involved in ce 97.6 0.0042 9.2E-08 53.2 14.5 135 211-348 96-245 (293)
109 KOG1062 Vesicle coat complex A 97.6 0.041 9E-07 54.8 22.9 42 283-328 354-395 (866)
110 KOG1824 TATA-binding protein-i 97.5 0.011 2.5E-07 59.7 18.9 233 23-267 45-288 (1233)
111 KOG0213 Splicing factor 3b, su 97.5 0.041 8.8E-07 54.5 22.1 254 28-310 802-1067(1172)
112 COG5240 SEC21 Vesicle coat com 97.5 0.011 2.4E-07 56.6 18.0 275 27-328 266-579 (898)
113 KOG1060 Vesicle coat complex A 97.5 0.018 4E-07 57.1 19.4 268 27-328 37-332 (968)
114 PF04078 Rcd1: Cell differenti 97.5 0.0084 1.8E-07 52.3 15.2 220 122-348 7-260 (262)
115 PF09759 Atx10homo_assoc: Spin 97.4 0.00056 1.2E-08 50.9 6.8 64 85-148 3-69 (102)
116 KOG3036 Protein involved in ce 97.4 0.011 2.4E-07 50.7 14.9 147 165-312 93-251 (293)
117 KOG2259 Uncharacterized conser 97.4 0.011 2.4E-07 57.5 16.5 268 70-362 236-526 (823)
118 KOG0567 HEAT repeat-containing 97.4 0.0062 1.3E-07 52.8 13.4 201 20-263 62-278 (289)
119 PF04078 Rcd1: Cell differenti 97.4 0.011 2.3E-07 51.6 14.8 221 81-307 8-261 (262)
120 PF13764 E3_UbLigase_R4: E3 ub 97.3 0.097 2.1E-06 53.6 23.3 238 64-310 113-408 (802)
121 PF11841 DUF3361: Domain of un 97.3 0.0057 1.2E-07 49.4 11.6 123 186-310 5-133 (160)
122 KOG1077 Vesicle coat complex A 97.3 0.051 1.1E-06 53.4 19.5 305 30-359 151-498 (938)
123 PF05004 IFRD: Interferon-rela 97.3 0.036 7.9E-07 50.7 17.8 193 114-311 47-260 (309)
124 KOG1240 Protein kinase contain 97.2 0.015 3.2E-07 60.3 16.1 268 27-310 424-727 (1431)
125 PF13513 HEAT_EZ: HEAT-like re 97.2 0.00074 1.6E-08 44.5 4.9 55 82-137 1-55 (55)
126 PF13513 HEAT_EZ: HEAT-like re 97.2 0.00063 1.4E-08 44.8 4.5 55 250-306 1-55 (55)
127 PF04063 DUF383: Domain of unk 97.2 0.0024 5.1E-08 53.8 8.8 125 162-289 6-157 (192)
128 COG5181 HSH155 U2 snRNP splice 97.2 0.012 2.6E-07 56.8 14.1 147 70-222 606-758 (975)
129 KOG2274 Predicted importin 9 [ 97.2 0.053 1.2E-06 54.7 18.9 228 78-312 460-693 (1005)
130 KOG2999 Regulator of Rac1, req 97.1 0.014 3.1E-07 55.6 13.5 166 112-277 85-254 (713)
131 PF05918 API5: Apoptosis inhib 97.0 0.13 2.9E-06 50.2 20.1 132 26-176 24-158 (556)
132 COG5096 Vesicle coat complex, 97.0 0.045 9.8E-07 55.2 16.7 141 26-181 56-196 (757)
133 COG5215 KAP95 Karyopherin (imp 97.0 0.4 8.6E-06 46.4 23.5 339 23-371 360-739 (858)
134 KOG1248 Uncharacterized conser 97.0 0.12 2.5E-06 54.0 19.5 227 78-310 664-900 (1176)
135 PF11698 V-ATPase_H_C: V-ATPas 96.9 0.0029 6.3E-08 48.4 5.9 71 69-139 44-115 (119)
136 KOG4151 Myosin assembly protei 96.9 0.026 5.6E-07 56.2 13.7 238 59-305 495-738 (748)
137 KOG1824 TATA-binding protein-i 96.9 0.16 3.5E-06 51.8 19.1 305 33-351 443-762 (1233)
138 KOG2032 Uncharacterized conser 96.8 0.055 1.2E-06 51.1 14.9 237 67-308 253-531 (533)
139 KOG0567 HEAT repeat-containing 96.8 0.33 7.1E-06 42.5 19.3 197 70-310 38-251 (289)
140 PF08569 Mo25: Mo25-like; Int 96.8 0.13 2.9E-06 47.4 16.9 210 64-277 72-297 (335)
141 COG5096 Vesicle coat complex, 96.7 0.82 1.8E-05 46.5 25.5 168 34-224 28-196 (757)
142 KOG1943 Beta-tubulin folding c 96.7 0.74 1.6E-05 47.8 22.6 254 19-303 335-606 (1133)
143 PF12755 Vac14_Fab1_bd: Vacuol 96.7 0.019 4.1E-07 42.6 8.9 90 42-137 3-94 (97)
144 PF08045 CDC14: Cell division 96.7 0.044 9.5E-07 48.2 12.4 99 41-140 107-208 (257)
145 KOG1058 Vesicle coat complex C 96.7 0.16 3.4E-06 50.6 17.2 107 151-268 243-349 (948)
146 KOG1078 Vesicle coat complex C 96.7 0.16 3.5E-06 50.7 17.2 260 25-309 245-533 (865)
147 KOG1240 Protein kinase contain 96.6 0.077 1.7E-06 55.3 15.2 232 25-265 462-725 (1431)
148 PF06371 Drf_GBD: Diaphanous G 96.6 0.043 9.4E-07 46.2 11.9 112 24-138 65-186 (187)
149 PF12717 Cnd1: non-SMC mitotic 96.6 0.26 5.6E-06 41.2 16.2 93 81-181 1-93 (178)
150 PF12717 Cnd1: non-SMC mitotic 96.6 0.065 1.4E-06 44.8 12.4 146 208-364 2-151 (178)
151 KOG4653 Uncharacterized conser 96.5 0.099 2.1E-06 52.7 14.8 216 120-349 737-963 (982)
152 PF11698 V-ATPase_H_C: V-ATPas 96.5 0.014 3E-07 44.7 7.1 74 23-97 41-115 (119)
153 PF12755 Vac14_Fab1_bd: Vacuol 96.4 0.017 3.7E-07 42.9 7.2 92 85-178 3-94 (97)
154 KOG1248 Uncharacterized conser 96.4 0.77 1.7E-05 48.2 20.8 216 121-351 665-899 (1176)
155 KOG4151 Myosin assembly protei 96.4 0.21 4.6E-06 50.0 16.3 208 95-310 489-701 (748)
156 COG5231 VMA13 Vacuolar H+-ATPa 96.3 0.28 6.1E-06 44.0 15.3 226 35-265 159-428 (432)
157 KOG0211 Protein phosphatase 2A 96.3 0.62 1.3E-05 47.6 19.7 304 28-348 358-665 (759)
158 PF04063 DUF383: Domain of unk 96.3 0.021 4.5E-07 48.2 7.8 123 79-202 6-157 (192)
159 KOG1058 Vesicle coat complex C 96.3 0.53 1.1E-05 47.0 18.1 137 151-309 317-464 (948)
160 KOG1943 Beta-tubulin folding c 96.3 0.37 8.1E-06 49.9 17.6 238 68-327 341-591 (1133)
161 PF12719 Cnd3: Nuclear condens 96.1 0.26 5.6E-06 45.0 14.8 170 68-247 26-208 (298)
162 KOG1078 Vesicle coat complex C 96.1 1.9 4E-05 43.5 24.0 260 70-351 247-533 (865)
163 KOG1967 DNA repair/transcripti 96.1 0.05 1.1E-06 55.1 10.3 185 70-259 817-1018(1030)
164 PF07814 WAPL: Wings apart-lik 96.0 0.54 1.2E-05 44.1 16.7 249 24-282 20-315 (361)
165 PF05004 IFRD: Interferon-rela 96.0 0.47 1E-05 43.4 15.7 193 70-266 45-258 (309)
166 PF13764 E3_UbLigase_R4: E3 ub 96.0 1.8 3.8E-05 44.7 20.9 219 106-327 113-384 (802)
167 KOG0211 Protein phosphatase 2A 95.8 2 4.3E-05 44.0 20.6 305 27-349 239-546 (759)
168 KOG2611 Neurochondrin/leucine- 95.8 0.74 1.6E-05 43.7 16.0 190 70-265 13-225 (698)
169 PF05918 API5: Apoptosis inhib 95.8 0.83 1.8E-05 44.9 16.9 144 23-180 57-207 (556)
170 PF11701 UNC45-central: Myosin 95.7 0.041 8.9E-07 45.0 7.0 103 32-136 50-156 (157)
171 PF08569 Mo25: Mo25-like; Int 95.7 1.7 3.7E-05 40.2 23.6 198 148-351 73-284 (335)
172 KOG2032 Uncharacterized conser 95.7 0.91 2E-05 43.2 16.2 148 160-309 267-417 (533)
173 PF02985 HEAT: HEAT repeat; I 95.6 0.018 4E-07 32.7 3.3 30 280-309 1-30 (31)
174 PF12719 Cnd3: Nuclear condens 95.6 0.59 1.3E-05 42.6 14.8 113 25-143 26-147 (298)
175 COG5209 RCD1 Uncharacterized p 95.5 0.15 3.3E-06 43.3 9.7 99 211-310 117-220 (315)
176 KOG4464 Signaling protein RIC- 95.5 1.4 3.1E-05 41.0 16.5 283 26-312 46-406 (532)
177 KOG1566 Conserved protein Mo25 95.5 1.5 3.2E-05 39.5 16.0 215 6-225 60-288 (342)
178 KOG0915 Uncharacterized conser 95.4 5.3 0.00012 43.5 25.4 276 26-310 999-1308(1702)
179 KOG4535 HEAT and armadillo rep 95.3 0.086 1.9E-06 49.7 8.1 156 153-310 435-605 (728)
180 KOG2999 Regulator of Rac1, req 95.2 1.4 3.1E-05 42.6 16.0 157 152-310 84-244 (713)
181 PF06025 DUF913: Domain of Unk 95.2 1 2.2E-05 42.5 15.3 95 68-162 106-207 (379)
182 PF08045 CDC14: Cell division 95.1 0.29 6.2E-06 43.1 10.5 96 84-179 107-206 (257)
183 PF11701 UNC45-central: Myosin 94.9 0.073 1.6E-06 43.5 6.0 147 111-262 4-156 (157)
184 PF06371 Drf_GBD: Diaphanous G 94.8 0.066 1.4E-06 45.0 5.8 82 183-264 98-186 (187)
185 PF02985 HEAT: HEAT repeat; I 94.7 0.088 1.9E-06 29.9 4.3 30 26-55 1-30 (31)
186 KOG4653 Uncharacterized conser 94.7 0.93 2E-05 46.1 13.7 218 74-304 733-960 (982)
187 KOG3665 ZYG-1-like serine/thre 94.6 0.84 1.8E-05 46.6 13.9 197 91-308 494-697 (699)
188 PF12460 MMS19_C: RNAPII trans 94.5 0.35 7.5E-06 46.4 10.5 112 69-182 272-396 (415)
189 PF14500 MMS19_N: Dos2-interac 94.5 1.3 2.8E-05 39.5 13.3 222 71-311 2-240 (262)
190 KOG1967 DNA repair/transcripti 94.3 0.23 5E-06 50.5 8.8 154 16-174 859-1018(1030)
191 PF06025 DUF913: Domain of Unk 94.1 1.4 2.9E-05 41.7 13.1 195 87-292 3-209 (379)
192 KOG0414 Chromosome condensatio 93.9 0.79 1.7E-05 48.1 11.8 139 69-222 920-1063(1251)
193 KOG2062 26S proteasome regulat 93.8 0.73 1.6E-05 46.0 10.9 156 26-206 519-679 (929)
194 KOG1991 Nuclear transport rece 93.8 9.6 0.00021 39.7 21.6 317 25-349 410-756 (1010)
195 PF11707 Npa1: Ribosome 60S bi 93.8 5.7 0.00012 36.8 17.7 157 70-226 58-240 (330)
196 PLN03076 ARF guanine nucleotid 93.7 6.7 0.00015 44.4 19.3 297 45-351 1112-1490(1780)
197 PF12031 DUF3518: Domain of un 93.7 0.34 7.5E-06 41.8 7.6 88 211-299 141-236 (257)
198 PF14668 RICTOR_V: Rapamycin-i 93.7 0.25 5.3E-06 34.4 5.5 67 168-236 4-70 (73)
199 PF14668 RICTOR_V: Rapamycin-i 93.3 0.28 6E-06 34.2 5.3 66 85-151 4-70 (73)
200 KOG2933 Uncharacterized conser 93.3 1.3 2.7E-05 39.8 10.6 140 26-178 89-232 (334)
201 KOG0414 Chromosome condensatio 93.2 1.5 3.3E-05 46.1 12.5 141 26-181 920-1065(1251)
202 KOG2025 Chromosome condensatio 93.1 6.9 0.00015 39.3 16.0 116 67-190 84-200 (892)
203 KOG2956 CLIP-associating prote 93.1 5.8 0.00013 37.8 15.0 174 81-266 300-478 (516)
204 PF12031 DUF3518: Domain of un 93.0 0.5 1.1E-05 40.9 7.5 125 124-250 80-230 (257)
205 COG5209 RCD1 Uncharacterized p 92.9 4 8.8E-05 35.0 12.6 144 166-310 115-270 (315)
206 KOG2274 Predicted importin 9 [ 92.8 13 0.00029 38.3 21.9 226 36-269 461-693 (1005)
207 PF12460 MMS19_C: RNAPII trans 92.5 10 0.00022 36.4 22.1 186 111-312 190-398 (415)
208 PF12530 DUF3730: Protein of u 92.4 7 0.00015 34.2 16.8 137 27-179 2-150 (234)
209 KOG1832 HIV-1 Vpr-binding prot 92.3 2.8 6.1E-05 43.0 12.5 285 22-310 436-826 (1516)
210 PF11707 Npa1: Ribosome 60S bi 92.2 9.5 0.00021 35.3 19.3 165 18-183 50-240 (330)
211 KOG1788 Uncharacterized conser 92.0 7.7 0.00017 40.9 15.3 254 47-309 664-983 (2799)
212 KOG1820 Microtubule-associated 91.8 13 0.00028 38.7 17.1 187 156-354 258-447 (815)
213 cd03568 VHS_STAM VHS domain fa 91.8 0.87 1.9E-05 36.5 7.2 75 236-310 37-112 (144)
214 KOG1788 Uncharacterized conser 91.7 6.1 0.00013 41.6 14.2 243 14-266 673-983 (2799)
215 cd03569 VHS_Hrs_Vps27p VHS dom 91.6 1.5 3.2E-05 35.1 8.3 74 236-309 41-115 (142)
216 KOG0915 Uncharacterized conser 91.5 25 0.00055 38.7 22.0 334 20-365 951-1321(1702)
217 PF08324 PUL: PUL domain; Int 91.5 1.6 3.4E-05 39.1 9.4 144 168-312 80-235 (268)
218 KOG2956 CLIP-associating prote 91.3 9.4 0.0002 36.5 14.1 150 18-179 322-476 (516)
219 KOG1243 Protein kinase [Genera 91.3 4.4 9.6E-05 40.5 12.6 252 32-308 261-515 (690)
220 KOG2611 Neurochondrin/leucine- 91.3 14 0.00031 35.4 19.9 188 114-306 15-223 (698)
221 KOG1820 Microtubule-associated 91.3 4 8.8E-05 42.2 12.9 193 120-327 263-457 (815)
222 cd03568 VHS_STAM VHS domain fa 91.1 1.9 4.2E-05 34.5 8.5 76 23-98 35-111 (144)
223 PF11864 DUF3384: Domain of un 91.0 12 0.00027 36.4 15.7 108 193-307 214-329 (464)
224 KOG2062 26S proteasome regulat 90.8 17 0.00037 36.9 15.9 158 112-293 521-679 (929)
225 cd03567 VHS_GGA VHS domain fam 90.7 1.4 3E-05 35.1 7.3 73 236-308 38-116 (139)
226 PF07814 WAPL: Wings apart-lik 90.4 16 0.00034 34.4 16.2 91 70-161 23-116 (361)
227 PF01347 Vitellogenin_N: Lipop 90.4 4.5 9.8E-05 41.0 12.6 132 70-218 433-584 (618)
228 KOG2025 Chromosome condensatio 90.3 22 0.00048 35.9 20.2 116 109-232 84-199 (892)
229 cd03561 VHS VHS domain family; 90.0 1.9 4.1E-05 34.0 7.6 75 236-310 37-114 (133)
230 PF08167 RIX1: rRNA processing 89.9 2.6 5.6E-05 34.7 8.6 108 69-180 26-143 (165)
231 cd03567 VHS_GGA VHS domain fam 89.9 3 6.5E-05 33.2 8.6 75 24-98 37-117 (139)
232 cd03569 VHS_Hrs_Vps27p VHS dom 89.8 2.9 6.3E-05 33.4 8.6 75 23-97 39-114 (142)
233 PF08324 PUL: PUL domain; Int 89.8 6.9 0.00015 34.9 12.0 185 70-255 65-264 (268)
234 PF10363 DUF2435: Protein of u 89.8 2 4.3E-05 31.5 6.9 74 24-100 2-75 (92)
235 COG5098 Chromosome condensatio 89.8 22 0.00048 35.9 15.6 131 37-182 908-1039(1128)
236 KOG1020 Sister chromatid cohes 89.5 38 0.00081 37.4 27.1 145 26-181 817-961 (1692)
237 PF10363 DUF2435: Protein of u 89.5 1.2 2.6E-05 32.6 5.6 69 112-181 5-73 (92)
238 COG5218 YCG1 Chromosome conden 89.3 6 0.00013 38.9 11.4 137 222-367 80-226 (885)
239 PF08167 RIX1: rRNA processing 89.3 6.3 0.00014 32.4 10.4 112 24-140 24-144 (165)
240 KOG4535 HEAT and armadillo rep 89.3 14 0.0003 35.6 13.4 262 83-351 270-560 (728)
241 cd03561 VHS VHS domain family; 88.8 4.6 0.0001 31.8 9.0 76 23-98 35-113 (133)
242 COG5218 YCG1 Chromosome conden 88.3 7.8 0.00017 38.1 11.4 109 24-144 90-201 (885)
243 PF12530 DUF3730: Protein of u 88.2 17 0.00037 31.8 16.6 201 71-292 3-216 (234)
244 KOG1243 Protein kinase [Genera 88.2 6.9 0.00015 39.2 11.3 192 149-355 328-520 (690)
245 KOG2137 Protein kinase [Signal 88.0 12 0.00026 37.6 12.8 134 65-204 386-520 (700)
246 KOG3665 ZYG-1-like serine/thre 87.9 8.6 0.00019 39.5 12.3 168 48-218 494-692 (699)
247 KOG0301 Phospholipase A2-activ 87.7 19 0.00041 36.0 13.7 161 38-205 557-729 (745)
248 cd03572 ENTH_epsin_related ENT 87.7 4.3 9.3E-05 31.5 7.7 73 25-97 38-119 (122)
249 COG5098 Chromosome condensatio 87.3 36 0.00078 34.5 19.0 115 239-358 302-423 (1128)
250 KOG2137 Protein kinase [Signal 87.2 11 0.00024 37.9 12.1 138 22-167 386-524 (700)
251 KOG1020 Sister chromatid cohes 86.8 6.9 0.00015 42.7 10.9 144 68-224 816-961 (1692)
252 PF08506 Cse1: Cse1; InterPro 86.2 30 0.00065 32.6 15.2 208 40-260 111-370 (370)
253 smart00288 VHS Domain present 86.2 7 0.00015 30.8 8.6 75 23-97 35-111 (133)
254 KOG0301 Phospholipase A2-activ 86.1 35 0.00076 34.3 14.6 168 73-247 549-727 (745)
255 PF11865 DUF3385: Domain of un 86.1 7.7 0.00017 31.7 9.0 145 24-178 9-155 (160)
256 PF06685 DUF1186: Protein of u 85.9 24 0.00052 31.1 13.6 151 109-283 30-201 (249)
257 PF01347 Vitellogenin_N: Lipop 85.9 43 0.00092 34.0 17.6 226 70-328 349-602 (618)
258 KOG4464 Signaling protein RIC- 85.8 32 0.00069 32.5 14.3 83 38-121 110-198 (532)
259 smart00288 VHS Domain present 85.7 3.7 7.9E-05 32.4 6.7 73 236-308 37-111 (133)
260 smart00638 LPD_N Lipoprotein N 85.2 44 0.00095 33.6 18.8 209 69-306 312-543 (574)
261 cd03572 ENTH_epsin_related ENT 85.1 4.3 9.3E-05 31.4 6.6 73 237-309 39-120 (122)
262 PF00790 VHS: VHS domain; Int 85.1 4.2 9.2E-05 32.4 6.9 73 236-308 42-118 (140)
263 PF14225 MOR2-PAG1_C: Cell mor 83.9 31 0.00067 30.7 16.7 177 110-306 60-252 (262)
264 COG5116 RPN2 26S proteasome re 83.1 18 0.00039 35.6 11.0 122 67-205 550-675 (926)
265 PF11865 DUF3385: Domain of un 83.0 13 0.00028 30.4 9.1 145 150-306 9-155 (160)
266 smart00638 LPD_N Lipoprotein N 82.8 16 0.00034 36.7 11.5 131 70-218 395-540 (574)
267 COG5116 RPN2 26S proteasome re 82.3 17 0.00037 35.8 10.5 124 150-291 550-674 (926)
268 KOG1848 Uncharacterized conser 82.1 20 0.00044 39.0 11.8 99 121-224 853-959 (1610)
269 PF04821 TIMELESS: Timeless pr 81.6 39 0.00084 30.2 12.8 128 24-183 12-152 (266)
270 PF10521 DUF2454: Protein of u 81.4 24 0.00052 31.8 11.1 71 26-97 120-203 (282)
271 PF14500 MMS19_N: Dos2-interac 80.9 41 0.00088 30.0 15.5 218 32-267 6-239 (262)
272 PF11791 Aconitase_B_N: Aconit 80.3 3 6.6E-05 33.3 4.2 42 85-137 80-121 (154)
273 KOG1566 Conserved protein Mo25 80.2 47 0.001 30.3 16.3 156 24-182 125-288 (342)
274 KOG2933 Uncharacterized conser 79.6 14 0.0003 33.5 8.4 142 153-307 90-233 (334)
275 PF14225 MOR2-PAG1_C: Cell mor 79.3 46 0.001 29.7 15.3 142 16-177 102-251 (262)
276 PF08506 Cse1: Cse1; InterPro 79.1 36 0.00078 32.1 11.7 131 39-175 225-370 (370)
277 cd08050 TAF6 TATA Binding Prot 79.0 16 0.00035 34.0 9.3 110 69-179 211-339 (343)
278 PF14726 RTTN_N: Rotatin, an a 78.4 22 0.00049 26.3 8.0 68 66-134 28-95 (98)
279 cd00197 VHS_ENTH_ANTH VHS, ENT 78.4 15 0.00033 27.9 7.6 71 236-306 37-113 (115)
280 PF14726 RTTN_N: Rotatin, an a 78.2 18 0.0004 26.8 7.5 69 22-92 27-95 (98)
281 cd00197 VHS_ENTH_ANTH VHS, ENT 77.5 25 0.00054 26.7 8.6 73 24-96 36-114 (115)
282 PF00790 VHS: VHS domain; Int 76.0 8.5 0.00018 30.6 5.8 75 24-98 41-119 (140)
283 COG5656 SXM1 Importin, protein 75.9 1E+02 0.0022 31.8 18.4 287 24-318 407-721 (970)
284 KOG2199 Signal transducing ada 75.5 20 0.00043 33.5 8.4 73 236-308 45-118 (462)
285 PF13251 DUF4042: Domain of un 75.2 39 0.00084 28.3 9.6 140 41-182 2-176 (182)
286 PF13251 DUF4042: Domain of un 74.9 35 0.00076 28.6 9.3 113 28-141 42-176 (182)
287 KOG1832 HIV-1 Vpr-binding prot 74.6 11 0.00025 38.9 7.2 165 14-191 590-784 (1516)
288 PF04869 Uso1_p115_head: Uso1 73.4 29 0.00064 31.8 9.2 137 24-161 33-209 (312)
289 PRK14707 hypothetical protein; 73.2 1.9E+02 0.0042 33.8 24.0 313 28-349 166-487 (2710)
290 cd03565 VHS_Tom1 VHS domain fa 72.9 25 0.00055 28.0 7.7 75 236-310 38-117 (141)
291 PF12830 Nipped-B_C: Sister ch 72.4 57 0.0012 27.3 11.5 71 24-101 7-78 (187)
292 KOG1991 Nuclear transport rece 70.9 1.5E+02 0.0032 31.5 20.5 268 26-306 463-755 (1010)
293 KOG4524 Uncharacterized conser 70.1 26 0.00057 36.6 8.7 96 23-119 801-898 (1014)
294 PF10274 ParcG: Parkin co-regu 70.0 64 0.0014 27.0 10.7 76 24-100 37-112 (183)
295 KOG2549 Transcription initiati 69.8 66 0.0014 31.6 10.8 146 23-180 205-370 (576)
296 KOG2676 Uncharacterized conser 69.3 8 0.00017 35.5 4.5 64 45-109 376-441 (478)
297 PF12726 SEN1_N: SEN1 N termin 69.1 76 0.0017 33.0 12.3 90 82-180 495-585 (727)
298 PF10521 DUF2454: Protein of u 68.9 25 0.00054 31.7 7.7 71 69-139 120-203 (282)
299 KOG1410 Nuclear transport rece 68.8 1.4E+02 0.0031 30.4 15.3 279 25-310 38-336 (1082)
300 KOG4231 Intracellular membrane 68.3 6.9 0.00015 37.7 4.0 65 115-179 333-398 (763)
301 KOG1949 Uncharacterized conser 67.8 1.5E+02 0.0033 30.4 13.6 145 28-178 177-329 (1005)
302 PF14663 RasGEF_N_2: Rapamycin 67.2 28 0.00062 26.6 6.7 42 23-66 6-47 (115)
303 PF12830 Nipped-B_C: Sister ch 65.9 70 0.0015 26.8 9.4 68 237-311 9-77 (187)
304 cd03565 VHS_Tom1 VHS domain fa 65.0 69 0.0015 25.5 9.2 75 23-97 36-115 (141)
305 cd08050 TAF6 TATA Binding Prot 64.2 74 0.0016 29.6 10.0 94 112-205 212-322 (343)
306 PF08216 CTNNBL: Catenin-beta- 63.9 10 0.00022 28.6 3.4 42 85-127 63-104 (108)
307 PF08216 CTNNBL: Catenin-beta- 63.5 9.3 0.0002 28.8 3.1 41 44-86 65-105 (108)
308 PF01603 B56: Protein phosphat 62.7 1.5E+02 0.0032 28.5 14.7 237 18-267 126-372 (409)
309 PF01365 RYDR_ITPR: RIH domain 61.2 60 0.0013 27.6 8.4 116 18-139 36-169 (207)
310 PF12726 SEN1_N: SEN1 N termin 60.4 2.2E+02 0.0047 29.7 21.0 158 150-310 440-610 (727)
311 PF12231 Rif1_N: Rap1-interact 59.7 1.6E+02 0.0034 27.8 16.2 218 81-308 59-303 (372)
312 PLN03076 ARF guanine nucleotid 58.5 3.5E+02 0.0076 31.5 16.6 234 24-268 1181-1492(1780)
313 KOG2038 CAATT-binding transcri 57.5 90 0.002 32.1 9.5 181 157-349 217-408 (988)
314 PRK14707 hypothetical protein; 57.4 3.9E+02 0.0084 31.6 24.0 276 26-310 206-490 (2710)
315 KOG2676 Uncharacterized conser 56.9 15 0.00032 33.9 3.8 61 88-148 376-439 (478)
316 PF12463 DUF3689: Protein of u 56.7 1.1E+02 0.0024 27.9 9.4 88 20-107 90-183 (303)
317 PF01365 RYDR_ITPR: RIH domain 56.4 60 0.0013 27.6 7.5 146 25-180 4-169 (207)
318 PF11864 DUF3384: Domain of un 55.5 2.1E+02 0.0045 27.9 21.8 278 39-349 4-329 (464)
319 PF12074 DUF3554: Domain of un 54.3 1.8E+02 0.0039 26.9 13.0 213 109-328 21-254 (339)
320 KOG1848 Uncharacterized conser 53.9 38 0.00083 37.0 6.7 164 78-247 852-1027(1610)
321 PF07923 N1221: N1221-like pro 53.5 41 0.00089 30.5 6.3 59 21-79 56-127 (293)
322 PF04064 DUF384: Domain of unk 52.5 53 0.0011 21.7 5.0 50 260-311 2-52 (58)
323 PF06012 DUF908: Domain of Unk 52.5 44 0.00096 30.9 6.5 77 168-244 239-324 (329)
324 PF09324 DUF1981: Domain of un 51.4 27 0.00059 25.1 3.9 64 108-175 15-83 (86)
325 KOG1087 Cytosolic sorting prot 49.6 53 0.0011 32.0 6.5 69 237-305 39-109 (470)
326 PF04869 Uso1_p115_head: Uso1 48.0 70 0.0015 29.4 6.8 101 36-137 108-229 (312)
327 KOG1791 Uncharacterized conser 47.5 4.7E+02 0.01 29.7 13.6 199 64-263 1435-1658(1758)
328 PLN03205 ATR interacting prote 47.5 2.6E+02 0.0056 26.6 12.5 155 26-181 324-517 (652)
329 PF14663 RasGEF_N_2: Rapamycin 47.3 38 0.00083 25.9 4.4 39 69-108 9-47 (115)
330 PF08389 Xpo1: Exportin 1-like 46.8 78 0.0017 24.7 6.4 48 124-174 100-147 (148)
331 PF07923 N1221: N1221-like pro 46.3 34 0.00073 31.1 4.6 54 67-120 59-126 (293)
332 KOG1525 Sister chromatid cohes 45.9 76 0.0017 35.0 7.6 145 24-179 258-404 (1266)
333 KOG0392 SNF2 family DNA-depend 45.9 4.4E+02 0.0095 29.3 12.6 237 24-267 76-327 (1549)
334 PF11791 Aconitase_B_N: Aconit 45.7 47 0.001 26.7 4.6 27 280-306 95-121 (154)
335 KOG0413 Uncharacterized conser 45.0 2.5E+02 0.0053 30.2 10.5 175 166-357 946-1142(1529)
336 KOG1992 Nuclear export recepto 45.0 3.9E+02 0.0085 28.0 18.8 32 111-142 499-530 (960)
337 PF09324 DUF1981: Domain of un 44.0 1.2E+02 0.0026 21.7 6.5 66 22-93 14-84 (86)
338 KOG2549 Transcription initiati 43.9 3.4E+02 0.0073 27.0 11.1 102 163-265 259-370 (576)
339 KOG2153 Protein involved in th 41.8 3.9E+02 0.0085 27.1 11.1 53 129-183 304-356 (704)
340 PF04388 Hamartin: Hamartin pr 41.6 3.5E+02 0.0075 27.9 11.3 116 25-140 4-141 (668)
341 PF12765 Cohesin_HEAT: HEAT re 41.2 17 0.00037 22.1 1.3 26 278-303 17-42 (42)
342 COG5656 SXM1 Importin, protein 40.4 4.5E+02 0.0097 27.4 22.5 319 17-350 363-711 (970)
343 PF04499 SAPS: SIT4 phosphatas 39.7 3.2E+02 0.007 26.8 10.4 107 68-179 21-147 (475)
344 PF03130 HEAT_PBS: PBS lyase H 38.9 28 0.00061 18.7 1.8 25 295-327 1-25 (27)
345 PF08713 DNA_alkylation: DNA a 38.8 1.7E+02 0.0037 24.7 7.7 77 25-109 120-196 (213)
346 KOG2199 Signal transducing ada 38.5 1.8E+02 0.004 27.4 7.8 74 24-97 44-118 (462)
347 PF10274 ParcG: Parkin co-regu 37.3 2.5E+02 0.0054 23.5 10.4 116 236-355 38-169 (183)
348 PF14666 RICTOR_M: Rapamycin-i 36.7 2.9E+02 0.0062 24.1 12.7 130 165-307 78-224 (226)
349 KOG0891 DNA-dependent protein 35.8 4.2E+02 0.0092 31.7 11.7 267 32-310 488-765 (2341)
350 PF06012 DUF908: Domain of Unk 33.2 1.8E+02 0.0039 26.9 7.2 47 58-104 253-304 (329)
351 KOG0413 Uncharacterized conser 33.0 2.8E+02 0.0062 29.7 8.8 113 16-134 567-680 (1529)
352 PF08389 Xpo1: Exportin 1-like 32.8 88 0.0019 24.4 4.6 49 250-303 100-148 (148)
353 KOG2149 Uncharacterized conser 32.2 2.9E+02 0.0062 26.2 8.2 120 20-142 53-173 (393)
354 PF12331 DUF3636: Protein of u 31.9 87 0.0019 25.2 4.2 39 209-247 109-147 (149)
355 cd00864 PI3Ka Phosphoinositide 31.8 2.7E+02 0.0059 22.4 8.1 77 25-122 39-117 (152)
356 KOG1087 Cytosolic sorting prot 31.1 2.1E+02 0.0046 27.9 7.4 72 24-96 37-111 (470)
357 PF04821 TIMELESS: Timeless pr 31.0 3.9E+02 0.0084 23.8 10.0 113 197-310 46-210 (266)
358 TIGR00117 acnB aconitate hydra 30.9 1.5E+02 0.0032 31.1 6.6 25 112-136 99-123 (844)
359 smart00567 EZ_HEAT E-Z type HE 30.6 73 0.0016 17.2 2.7 17 294-310 2-18 (30)
360 KOG4231 Intracellular membrane 30.4 1E+02 0.0023 30.1 5.1 61 35-97 338-399 (763)
361 PF06685 DUF1186: Protein of u 30.1 3.9E+02 0.0085 23.6 13.3 75 67-147 72-151 (249)
362 COG5537 IRR1 Cohesin [Cell div 29.9 4.8E+02 0.01 26.4 9.5 104 31-139 281-386 (740)
363 PF04388 Hamartin: Hamartin pr 29.6 6.5E+02 0.014 26.0 13.2 135 110-266 4-141 (668)
364 PF13001 Ecm29: Proteasome sta 29.4 3.8E+02 0.0082 26.5 9.2 173 78-265 247-443 (501)
365 PF01417 ENTH: ENTH domain; I 29.3 1.9E+02 0.004 22.3 5.8 90 214-309 23-122 (125)
366 PF13001 Ecm29: Proteasome sta 29.2 3.6E+02 0.0078 26.6 9.0 151 21-180 268-443 (501)
367 PF04499 SAPS: SIT4 phosphatas 28.4 4.5E+02 0.0097 25.8 9.3 76 234-309 60-150 (475)
368 KOG0392 SNF2 family DNA-depend 28.1 2.6E+02 0.0056 30.9 7.8 106 26-138 817-924 (1549)
369 cd00872 PI3Ka_I Phosphoinositi 27.8 2.3E+02 0.005 23.4 6.2 79 23-122 37-117 (171)
370 KOG0803 Predicted E3 ubiquitin 26.9 8.7E+02 0.019 27.4 11.8 108 24-139 40-153 (1312)
371 PF07571 DUF1546: Protein of u 26.4 1.7E+02 0.0038 21.2 4.8 56 123-178 19-76 (92)
372 PF01603 B56: Protein phosphat 25.8 5.9E+02 0.013 24.3 11.6 75 107-181 130-205 (409)
373 PF02847 MA3: MA3 domain; Int 25.5 1.8E+02 0.004 21.6 5.1 69 280-349 37-107 (113)
374 PF07539 DRIM: Down-regulated 25.4 1E+02 0.0022 24.6 3.6 37 60-96 9-45 (141)
375 PF07571 DUF1546: Protein of u 25.3 1.8E+02 0.0039 21.1 4.7 58 164-221 19-76 (92)
376 PF00613 PI3Ka: Phosphoinositi 24.4 2.2E+02 0.0048 23.8 5.7 77 25-122 45-123 (184)
377 PF12231 Rif1_N: Rap1-interact 23.9 6.1E+02 0.013 23.8 17.5 216 38-265 59-303 (372)
378 PF10954 DUF2755: Protein of u 23.0 99 0.0022 22.2 2.7 41 254-296 25-66 (100)
379 KOG2011 Sister chromatid cohes 23.0 4.2E+02 0.0091 28.8 8.3 132 36-177 298-432 (1048)
380 PF08454 RIH_assoc: RyR and IP 23.0 2.2E+02 0.0048 21.5 4.9 45 35-79 63-107 (109)
381 PF14666 RICTOR_M: Rapamycin-i 21.4 5.5E+02 0.012 22.3 13.6 130 208-350 78-225 (226)
382 PF12054 DUF3535: Domain of un 20.8 7.8E+02 0.017 23.9 9.9 115 251-374 102-219 (441)
383 smart00544 MA3 Domain in DAP-5 20.7 3.6E+02 0.0078 20.0 6.0 97 241-349 9-107 (113)
384 KOG2374 Uncharacterized conser 20.3 4.8E+02 0.01 25.6 7.4 87 25-119 6-93 (661)
385 cd00870 PI3Ka_III Phosphoinosi 20.3 3.7E+02 0.008 22.1 6.1 76 26-122 47-124 (166)
386 PF08620 RPAP1_C: RPAP1-like, 20.0 2.1E+02 0.0046 19.9 3.9 30 26-55 40-69 (73)
No 1
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.9e-36 Score=279.87 Aligned_cols=321 Identities=19% Similarity=0.264 Sum_probs=285.8
Q ss_pred HhHHHHHHHHhc-CCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhccChhh
Q 017249 24 QALIEELSDKLI-NGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIESSLLALLNLAVRNERN 102 (375)
Q Consensus 24 ~~~l~~Lv~~L~-s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~~~~~~~~~a~~~L~~L~~~~~~~ 102 (375)
.|.+|.+|.+|. ..++..+.+|+|+|.+++.+. .+.-+.+++.|++|.++.++.+++..++++|+|+|+|++++++.+
T Consensus 108 ~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgt-se~T~~vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~ 186 (514)
T KOG0166|consen 108 SGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGT-SEQTKVVVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDC 186 (514)
T ss_pred cCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCc-hhhccccccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHH
Confidence 399999999997 566999999999999999999 777778899999999999999999999999999999999999999
Q ss_pred HHHHHHcCChHHHHHhhcCCCh-HHHHHHHHHHHHhhccCCChhHH-HhcCChHHHHHHhccCCHHHHHHHHHHHHHhcc
Q 017249 103 KVKIATAGAIPPLVELLKFQNG-TLRELAAAAILTLSAAAPNKPAI-AASGAAPLLVQILHSGSVQGRVDAVTALHYLST 180 (375)
Q Consensus 103 r~~i~~~g~i~~Lv~lL~~~~~-~~~~~a~~~L~~Ls~~~~~~~~i-~~~~~l~~L~~lL~~~~~~~~~~a~~~L~~L~~ 180 (375)
|+.++..|++++|+.++...+. .....+.|+|.||+......+.+ ....++|.|..++++.|..+...|+|+|.+|+.
T Consensus 187 Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsd 266 (514)
T KOG0166|consen 187 RDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTD 266 (514)
T ss_pred HHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhc
Confidence 9999999999999999988765 77889999999999987543333 456889999999999999999999999999997
Q ss_pred C-CCCchhhhhcCCcHHHHHHhhhcccchHHHHHHHHHHHHhhCChhhhHHHhhccCcHHHHHHHhc-cCChHHHHHHHH
Q 017249 181 C-KENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVE-DGSLVSTQHAVG 258 (375)
Q Consensus 181 ~-~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~Lv~lL~-~~~~~~~~~a~~ 258 (375)
+ ++....+++.|+++.|+.+|.+.+. .++-.|+++++|++...+.+++.+...|+++.|..++. +....++++|||
T Consensus 267 g~ne~iq~vi~~gvv~~LV~lL~~~~~--~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW 344 (514)
T KOG0166|consen 267 GSNEKIQMVIDAGVVPRLVDLLGHSSP--KVVTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACW 344 (514)
T ss_pred CChHHHHHHHHccchHHHHHHHcCCCc--ccccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHH
Confidence 6 5777888899999999999998743 56678999999999999998888888999999999998 566779999999
Q ss_pred HHHHhcccCcHHHHHHHHHcCChHHHHHHhhhCCHHHHHHHHHHHHHhhcCChh----hhhhhhhHHHHHHHHhhcCCCh
Q 017249 259 ALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDTPQE----KRLSSSVLEKIVYDIAARVDGA 334 (375)
Q Consensus 259 ~L~~l~~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~~----~~~~~g~~~~l~~~l~~~~~g~ 334 (375)
+|.|++.+. .+..+++++.|++|.|+.++..++.++|+.|+|++.|++..... -+++.|+++++...|. ...
T Consensus 345 ~iSNItAG~-~~qiqaVida~l~p~Li~~l~~~ef~~rKEAawaIsN~ts~g~~~qi~yLv~~giI~plcdlL~--~~D- 420 (514)
T KOG0166|consen 345 TISNITAGN-QEQIQAVIDANLIPVLINLLQTAEFDIRKEAAWAISNLTSSGTPEQIKYLVEQGIIKPLCDLLT--CPD- 420 (514)
T ss_pred HHHHhhcCC-HHHHHHHHHcccHHHHHHHHhccchHHHHHHHHHHHhhcccCCHHHHHHHHHcCCchhhhhccc--CCC-
Confidence 999999987 68899999999999999999999999999999999999877733 5789999999998884 333
Q ss_pred HHHHHHHHHHHHHHHHH
Q 017249 335 DKAAETAKRLLQDMVQR 351 (375)
Q Consensus 335 ~~~~~~a~~~l~~l~~~ 351 (375)
.+....+...|.+|.+.
T Consensus 421 ~~ii~v~Ld~l~nil~~ 437 (514)
T KOG0166|consen 421 VKIILVALDGLENILKV 437 (514)
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 55577777788887654
No 2
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=100.00 E-value=4.9e-33 Score=292.87 Aligned_cols=345 Identities=21% Similarity=0.249 Sum_probs=298.1
Q ss_pred hhhHHHHHhhHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHH
Q 017249 14 QEEEAWNQRKQALIEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIESSLLALL 93 (375)
Q Consensus 14 ~~~~~~~~~~~~~l~~Lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~~~~~~~~~a~~~L~ 93 (375)
+...+..+.+.+.++.||.+|...+.+.|..+++.|.+++.++ ++.+..+++.|+++.|+++|.+++...++.|+++|+
T Consensus 393 N~~l~~~L~~~daik~LV~LL~~~~~evQ~~Av~aL~~L~~~~-~e~~~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~ 471 (2102)
T PLN03200 393 NAYLSRKLNHAEAKKVLVGLITMATADVQEELIRALSSLCCGK-GGLWEALGGREGVQLLISLLGLSSEQQQEYAVALLA 471 (2102)
T ss_pred ChHHHHHHHhccchhhhhhhhccCCHHHHHHHHHHHHHHhCCC-HHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 3445667778899999999999999999999999999999888 789999999999999999999999999999999999
Q ss_pred HhhccChhhHHHHHHcCChHHHHHhhcCCChHHHHHHHHHHHHhhccCCChhH-HHhcCChHHHHHHhccCCHHHHHHHH
Q 017249 94 NLAVRNERNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPA-IAASGAAPLLVQILHSGSVQGRVDAV 172 (375)
Q Consensus 94 ~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~-i~~~~~l~~L~~lL~~~~~~~~~~a~ 172 (375)
+++.++++++..+++.|++|+|+++|.++++.+++.|+|+|.|++.++++... +...|++++|+++|++++.+++..|+
T Consensus 472 nLa~~ndenr~aIieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa 551 (2102)
T PLN03200 472 ILTDEVDESKWAITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLLKNGGPKGQEIAA 551 (2102)
T ss_pred HHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHH
Confidence 99998889999999999999999999999999999999999999997765444 55789999999999999999999999
Q ss_pred HHHHHhccCCCCc-------------------------------------hh-hhhcCCcHHHHHHhhhcccchHHHHHH
Q 017249 173 TALHYLSTCKENS-------------------------------------SP-ILDATAVPPLINLLKDCKKYSKFAEKA 214 (375)
Q Consensus 173 ~~L~~L~~~~~~~-------------------------------------~~-i~~~g~i~~Lv~ll~~~~~~~~~~~~a 214 (375)
++|.+|+...+.. .. ....|+++.|++++.+++ ..+++.|
T Consensus 552 ~AL~nLi~~~d~~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs--~~ikk~A 629 (2102)
T PLN03200 552 KTLTKLVRTADAATISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSK--EETQEKA 629 (2102)
T ss_pred HHHHHHHhccchhHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCC--HHHHHHH
Confidence 9999996432110 00 113589999999999874 4678999
Q ss_pred HHHHHHhhCC-hhhhHHHhhccCcHHHHHHHhccCChHHHHHHHHHHHHhcccCcHHHHHHHHHcCChHHHHHHhhhCCH
Q 017249 215 TALLEILSSS-EEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTF 293 (375)
Q Consensus 215 ~~~L~~l~~~-~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~g~v~~L~~ll~~~~~ 293 (375)
+++|.+++.+ ++.+..++ ..|+++.|+.+|.+++..++..|+|+|.+++.+..++.+..+++.|++++|++++.+.+.
T Consensus 630 a~iLsnL~a~~~d~~~avv-~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL~~~d~ 708 (2102)
T PLN03200 630 ASVLADIFSSRQDLCESLA-TDEIINPCIKLLTNNTEAVATQSARALAALSRSIKENRKVSYAAEDAIKPLIKLAKSSSI 708 (2102)
T ss_pred HHHHHHHhcCChHHHHHHH-HcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCHHHHHHHHhCCCh
Confidence 9999999975 45556666 689999999999999999999999999999987656667788999999999999999999
Q ss_pred HHHHHHHHHHHHhhcCChh--hhhhhhhHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHH-HHHH-hHHHHHHHhh
Q 017249 294 EAQERARTLLDLLRDTPQE--KRLSSSVLEKIVYDIAARVDGADKAAETAKRLLQDMVQR-SMEL-SMTRIQQRAA 365 (375)
Q Consensus 294 ~~~~~A~~~L~~l~~~~~~--~~~~~g~~~~l~~~l~~~~~g~~~~~~~a~~~l~~l~~~-s~~~-~~~~~~~~~~ 365 (375)
.+.+.|+.+|.++..+.+. ++...|++++|+..|. .|+++.|+.|.++|..|.+. +.+. -...+.++|.
T Consensus 709 ~v~e~Al~ALanLl~~~e~~~ei~~~~~I~~Lv~lLr---~G~~~~k~~Aa~AL~~L~~~~~~~~~~~~~~~~~g~ 781 (2102)
T PLN03200 709 EVAEQAVCALANLLSDPEVAAEALAEDIILPLTRVLR---EGTLEGKRNAARALAQLLKHFPVDDVLKDSVQCRGT 781 (2102)
T ss_pred HHHHHHHHHHHHHHcCchHHHHHHhcCcHHHHHHHHH---hCChHHHHHHHHHHHHHHhCCChhHHHHHHHHHhCc
Confidence 9999999999999998854 5678899999999996 78899999999999888654 4444 3344445543
No 3
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=100.00 E-value=9.1e-35 Score=251.83 Aligned_cols=325 Identities=17% Similarity=0.176 Sum_probs=279.1
Q ss_pred HHhhHhHHHHHHHHhc-CCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcc
Q 017249 20 NQRKQALIEELSDKLI-NGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIESSLLALLNLAVR 98 (375)
Q Consensus 20 ~~~~~~~l~~Lv~~L~-s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~~~~~~~~~a~~~L~~L~~~ 98 (375)
.+.+.|.+|++|+++. ....-.+.+|+|+|.|++.+. ...-+.++++|++|.++++|.++..+++++++|+|+|++++
T Consensus 109 ~VIdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGt-t~QTkvVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGD 187 (526)
T COG5064 109 PVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGT-TQQTKVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGD 187 (526)
T ss_pred hHHhccccHHHHHHHHhcchhHHHHHHHHHHhhhccCc-ccceEEEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCC
Confidence 4556789999999996 455557899999999999998 44445567999999999999999999999999999999999
Q ss_pred ChhhHHHHHHcCChHHHHHhhcCCC--hHHHHHHHHHHHHhhccCCCh-hHHHhcCChHHHHHHhccCCHHHHHHHHHHH
Q 017249 99 NERNKVKIATAGAIPPLVELLKFQN--GTLRELAAAAILTLSAAAPNK-PAIAASGAAPLLVQILHSGSVQGRVDAVTAL 175 (375)
Q Consensus 99 ~~~~r~~i~~~g~i~~Lv~lL~~~~--~~~~~~a~~~L~~Ls~~~~~~-~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L 175 (375)
++.+|+.+.+.|++++++.++.+.. -.+...+.|+|.||+...... ..-.-...+|.|.+++.+.++++...|+|++
T Consensus 188 S~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~P~w~~isqalpiL~KLiys~D~evlvDA~WAi 267 (526)
T COG5064 188 SEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDWSNISQALPILAKLIYSRDPEVLVDACWAI 267 (526)
T ss_pred chhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHhhcCHHHHHHHHHHH
Confidence 9999999999999999999998764 477889999999999764322 2222346799999999999999999999999
Q ss_pred HHhccCC-CCchhhhhcCCcHHHHHHhhhcccchHHHHHHHHHHHHhhCChhhhHHHhhccCcHHHHHHHhccCChHHHH
Q 017249 176 HYLSTCK-ENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQ 254 (375)
Q Consensus 176 ~~L~~~~-~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~ 254 (375)
.+|+..+ +....+++.|..+.|+.+|.+. +..++..+++.++|+....+.+.+++...|+++.+-.+|.++...+++
T Consensus 268 SYlsDg~~E~i~avld~g~~~RLvElLs~~--sa~iqtPalR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~ke~irK 345 (526)
T COG5064 268 SYLSDGPNEKIQAVLDVGIPGRLVELLSHE--SAKIQTPALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSPKENIRK 345 (526)
T ss_pred HHhccCcHHHHHHHHhcCCcHHHHHHhcCc--cccccCHHHHhhcCeeecCccceehheecccHHHHHHHhcChhhhhhh
Confidence 9999886 6677888999999999999986 446788899999999999888888887899999999999999999999
Q ss_pred HHHHHHHHhcccCcHHHHHHHHHcCChHHHHHHhhhCCHHHHHHHHHHHHHhhcCC---hh---hhhhhhhHHHHHHHHh
Q 017249 255 HAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDTP---QE---KRLSSSVLEKIVYDIA 328 (375)
Q Consensus 255 ~a~~~L~~l~~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~~~~~A~~~L~~l~~~~---~~---~~~~~g~~~~l~~~l~ 328 (375)
+|||++.|+..+. .+..+++++.+.+|+|+.++...+..+++.|+|++.|...+. |. -++..|++.+|...|.
T Consensus 346 EaCWTiSNITAGn-teqiqavid~nliPpLi~lls~ae~k~kKEACWAisNatsgg~~~PD~iryLv~qG~IkpLc~~L~ 424 (526)
T COG5064 346 EACWTISNITAGN-TEQIQAVIDANLIPPLIHLLSSAEYKIKKEACWAISNATSGGLNRPDIIRYLVSQGFIKPLCDLLD 424 (526)
T ss_pred hhheeecccccCC-HHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhccccCCchHHHHHHHccchhHHHHHHh
Confidence 9999999999987 578999999999999999999999999999999999998766 22 4678999999998775
Q ss_pred hcCCChHHHHHHHHHHHHHHHHH
Q 017249 329 ARVDGADKAAETAKRLLQDMVQR 351 (375)
Q Consensus 329 ~~~~g~~~~~~~a~~~l~~l~~~ 351 (375)
... -+.-+.+..++.++.+.
T Consensus 425 ~~d---Nkiiev~LD~~eniLk~ 444 (526)
T COG5064 425 VVD---NKIIEVALDAIENILKV 444 (526)
T ss_pred ccC---ccchhhhHHHHHHHHhh
Confidence 222 34556666777776543
No 4
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=100.00 E-value=1.3e-31 Score=282.27 Aligned_cols=331 Identities=22% Similarity=0.213 Sum_probs=284.5
Q ss_pred hhhhHHHHHhhHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHH
Q 017249 13 DQEEEAWNQRKQALIEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIESSLLAL 92 (375)
Q Consensus 13 ~~~~~~~~~~~~~~l~~Lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~~~~~~~~~a~~~L 92 (375)
++.+.+..+.+.++++.|+++|.+++...|..|++.|.+++.++ ++++..+++.|++|+|+++|++++.++++.|+|+|
T Consensus 434 ~~~e~~~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~n-denr~aIieaGaIP~LV~LL~s~~~~iqeeAawAL 512 (2102)
T PLN03200 434 GKGGLWEALGGREGVQLLISLLGLSSEQQQEYAVALLAILTDEV-DESKWAITAAGGIPPLVQLLETGSQKAKEDSATVL 512 (2102)
T ss_pred CCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC-HHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHH
Confidence 44677888999999999999999999999999999999999988 78899999999999999999999999999999999
Q ss_pred HHhhccChhhHHHHHHcCChHHHHHhhcCCChHHHHHHHHHHHHhhccCCCh----------------------------
Q 017249 93 LNLAVRNERNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNK---------------------------- 144 (375)
Q Consensus 93 ~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~---------------------------- 144 (375)
.|++.++++.+..+...|++++|+++|+++++..++.|+++|.+|+.+.+..
T Consensus 513 ~NLa~~~~qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d~~~I~~Lv~LLlsdd~~~~~~aL~vLgnIl 592 (2102)
T PLN03200 513 WNLCCHSEDIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTADAATISQLTALLLGDLPESKVHVLDVLGHVL 592 (2102)
T ss_pred HHHhCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccchhHHHHHHHHhcCCChhHHHHHHHHHHHHH
Confidence 9999976677777778999999999999999999999999999996432211
Q ss_pred ---------hH-HHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccC-CCCchhhhhcCCcHHHHHHhhhcccchHHHHH
Q 017249 145 ---------PA-IAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTC-KENSSPILDATAVPPLINLLKDCKKYSKFAEK 213 (375)
Q Consensus 145 ---------~~-i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~~L~~~-~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~ 213 (375)
.. ....|+++.|++++++++..+++.|+++|.+++.+ ++++..++..|++++++.++.+++ ..++..
T Consensus 593 sl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~LLss~~--~~v~ke 670 (2102)
T PLN03200 593 SVASLEDLVREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFSSRQDLCESLATDEIINPCIKLLTNNT--EAVATQ 670 (2102)
T ss_pred hhcchhHHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCC--hHHHHH
Confidence 00 11358999999999999999999999999999976 467888999999999999999874 357788
Q ss_pred HHHHHHHhhC--ChhhhHHHhhccCcHHHHHHHhccCChHHHHHHHHHHHHhcccCcHHHHHHHHHcCChHHHHHHhhhC
Q 017249 214 ATALLEILSS--SEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEG 291 (375)
Q Consensus 214 a~~~L~~l~~--~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~g~v~~L~~ll~~~ 291 (375)
+.++|.|++. .+.++..++ +.|+++.|+.+|.+.+..+++.|+.+|.|++.+. +.+..+...|+++.|+++++++
T Consensus 671 AA~AL~nL~~~~~~~q~~~~v-~~GaV~pL~~LL~~~d~~v~e~Al~ALanLl~~~--e~~~ei~~~~~I~~Lv~lLr~G 747 (2102)
T PLN03200 671 SARALAALSRSIKENRKVSYA-AEDAIKPLIKLAKSSSIEVAEQAVCALANLLSDP--EVAAEALAEDIILPLTRVLREG 747 (2102)
T ss_pred HHHHHHHHHhCCCHHHHHHHH-HcCCHHHHHHHHhCCChHHHHHHHHHHHHHHcCc--hHHHHHHhcCcHHHHHHHHHhC
Confidence 9999999985 344455666 6899999999999999999999999999999987 6688888999999999999999
Q ss_pred CHHHHHHHHHHHHHhhcCChh------hhhhhhhHHHHHHHHhhcCCChHHHHHHHHHHHHHHHH
Q 017249 292 TFEAQERARTLLDLLRDTPQE------KRLSSSVLEKIVYDIAARVDGADKAAETAKRLLQDMVQ 350 (375)
Q Consensus 292 ~~~~~~~A~~~L~~l~~~~~~------~~~~~g~~~~l~~~l~~~~~g~~~~~~~a~~~l~~l~~ 350 (375)
+++.|++|+++|..|+++.+. .+...|.+.+|+..|. ..|+.-..--.|...|.+|.+
T Consensus 748 ~~~~k~~Aa~AL~~L~~~~~~~~~~~~~~~~~g~v~~l~~~L~-~~~~~~~~~~~al~~l~~l~~ 811 (2102)
T PLN03200 748 TLEGKRNAARALAQLLKHFPVDDVLKDSVQCRGTVLALVDLLN-STDLDSSATSEALEALALLAR 811 (2102)
T ss_pred ChHHHHHHHHHHHHHHhCCChhHHHHHHHHHhCcHHHHHHHHh-cCCcchhhHHHHHHHHHHHHh
Confidence 999999999999999987753 3467899999998886 355534444457777777754
No 5
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.6e-32 Score=239.78 Aligned_cols=327 Identities=21% Similarity=0.278 Sum_probs=294.2
Q ss_pred hhhhHHHHHhhHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHH
Q 017249 13 DQEEEAWNQRKQALIEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIESSLLAL 92 (375)
Q Consensus 13 ~~~~~~~~~~~~~~l~~Lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~~~~~~~~~a~~~L 92 (375)
-+.+++.-+++..++..|+..+.++..++|..++.+|.+++..+ +++..+...|++.++..+-++.+..+|+.+..+|
T Consensus 114 Vn~enk~liv~l~Gl~~Li~qmmtd~vevqcnaVgCitnLaT~d--~nk~kiA~sGaL~pltrLakskdirvqrnatgaL 191 (550)
T KOG4224|consen 114 VNMENKGLIVSLLGLDLLILQMMTDGVEVQCNAVGCITNLATFD--SNKVKIARSGALEPLTRLAKSKDIRVQRNATGAL 191 (550)
T ss_pred eccCCceEEEeccChHHHHHHhcCCCcEEEeeehhhhhhhhccc--cchhhhhhccchhhhHhhcccchhhHHHHHHHHH
Confidence 34556667788889999999999999999999999999999998 8999999999999999988999999999999999
Q ss_pred HHhhccChhhHHHHHHcCChHHHHHhhcCCChHHHHHHHHHHHHhhccCCChhHHHhcC--ChHHHHHHhccCCHHHHHH
Q 017249 93 LNLAVRNERNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASG--AAPLLVQILHSGSVQGRVD 170 (375)
Q Consensus 93 ~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~--~l~~L~~lL~~~~~~~~~~ 170 (375)
.++++ ..++|..++..|++|.|+++++++++++++.+..++.|++.+...+..+...+ .++.|++++++++++++-.
T Consensus 192 lnmTh-s~EnRr~LV~aG~lpvLVsll~s~d~dvqyycttaisnIaVd~~~Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcq 270 (550)
T KOG4224|consen 192 LNMTH-SRENRRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAVDRRARKILAQAEPKLVPALVDLMDDGSDKVKCQ 270 (550)
T ss_pred HHhhh-hhhhhhhhhccCCchhhhhhhccCChhHHHHHHHHhhhhhhhHHHHHHHHhcccchHHHHHHHHhCCChHHHHH
Confidence 99999 78999999999999999999999999999999999999999988888887655 9999999999999999999
Q ss_pred HHHHHHHhccCCCCchhhhhcCCcHHHHHHhhhcccchHHHHHHHHHHHHhhCChhhhHHHhhccCcHHHHHHHhccCC-
Q 017249 171 AVTALHYLSTCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGS- 249 (375)
Q Consensus 171 a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~- 249 (375)
|..+|.||+.+.+....+++.|.+|.++++++++. .........+++|++.+|-+-.-++ +.|++..|+.+|+.++
T Consensus 271 A~lALrnlasdt~Yq~eiv~ag~lP~lv~Llqs~~--~plilasVaCIrnisihplNe~lI~-dagfl~pLVrlL~~~dn 347 (550)
T KOG4224|consen 271 AGLALRNLASDTEYQREIVEAGSLPLLVELLQSPM--GPLILASVACIRNISIHPLNEVLIA-DAGFLRPLVRLLRAGDN 347 (550)
T ss_pred HHHHHhhhcccchhhhHHHhcCCchHHHHHHhCcc--hhHHHHHHHHHhhcccccCccccee-cccchhHHHHHHhcCCc
Confidence 99999999999999999999999999999998753 3345567889999999999988888 7999999999998655
Q ss_pred hHHHHHHHHHHHHhcccCcHHHHHHHHHcCChHHHHHHhhhCCHHHHHHHHHHHHHhhcCC--hhhhhhhhhHHHHHHHH
Q 017249 250 LVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDTP--QEKRLSSSVLEKIVYDI 327 (375)
Q Consensus 250 ~~~~~~a~~~L~~l~~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~~~~~A~~~L~~l~~~~--~~~~~~~g~~~~l~~~l 327 (375)
++++-.|+.+|+||+... ...+..+.+.|++|.|.+++.+++-.+|..-..++..|+-.. ...+...|.++.|+..+
T Consensus 348 EeiqchAvstLrnLAass-e~n~~~i~esgAi~kl~eL~lD~pvsvqseisac~a~Lal~d~~k~~lld~gi~~iLIp~t 426 (550)
T KOG4224|consen 348 EEIQCHAVSTLRNLAASS-EHNVSVIRESGAIPKLIELLLDGPVSVQSEISACIAQLALNDNDKEALLDSGIIPILIPWT 426 (550)
T ss_pred hhhhhhHHHHHHHHhhhh-hhhhHHHhhcCchHHHHHHHhcCChhHHHHHHHHHHHHHhccccHHHHhhcCCcceeeccc
Confidence 669999999999999976 467889999999999999999999999999999888887555 44678899999998776
Q ss_pred hhcCCChHHHHHHHHHHHHHHH
Q 017249 328 AARVDGADKAAETAKRLLQDMV 349 (375)
Q Consensus 328 ~~~~~g~~~~~~~a~~~l~~l~ 349 (375)
. +-+...+..|+++|-+|.
T Consensus 427 ~---s~s~Ev~gNaAaAL~Nls 445 (550)
T KOG4224|consen 427 G---SESEEVRGNAAAALINLS 445 (550)
T ss_pred C---ccchhhcccHHHHHHhhh
Confidence 5 445888899999999996
No 6
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=9.1e-31 Score=243.36 Aligned_cols=322 Identities=20% Similarity=0.258 Sum_probs=279.9
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCC-CCHHHHHHHHHHHHHhhccChhhHHH
Q 017249 27 IEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVS-PNLDAIESSLLALLNLAVRNERNKVK 105 (375)
Q Consensus 27 l~~Lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~-~~~~~~~~a~~~L~~L~~~~~~~r~~ 105 (375)
.+.++..+.|+++..+..+...++.+.........+.++..|.|+.+|++|.. .++.++..|+|+|.|++.++.+.-..
T Consensus 68 ~~~~~~~~~S~~~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~ 147 (514)
T KOG0166|consen 68 LELMLAALYSDDPQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKV 147 (514)
T ss_pred hHHHHHHHhCCCHHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccc
Confidence 78888889999999999999999999876633445666677999999999975 46999999999999999999999999
Q ss_pred HHHcCChHHHHHhhcCCChHHHHHHHHHHHHhhccCC-ChhHHHhcCChHHHHHHhccCCH-HHHHHHHHHHHHhccCCC
Q 017249 106 IATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAP-NKPAIAASGAAPLLVQILHSGSV-QGRVDAVTALHYLSTCKE 183 (375)
Q Consensus 106 i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~-~~~~i~~~~~l~~L~~lL~~~~~-~~~~~a~~~L~~L~~~~~ 183 (375)
+++.|++|.|+.++.+++..+++.|+|+|.|++.+.+ .+..+...|++++|+.++...+. ...+.+.|+|.|||.+..
T Consensus 148 vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~ 227 (514)
T KOG0166|consen 148 VVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKN 227 (514)
T ss_pred cccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCC
Confidence 9999999999999999999999999999999999876 68888899999999999988875 789999999999998754
Q ss_pred Cchhhh-hcCCcHHHHHHhhhcccchHHHHHHHHHHHHhhCChhhhHHHhhccCcHHHHHHHhccCChHHHHHHHHHHHH
Q 017249 184 NSSPIL-DATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLS 262 (375)
Q Consensus 184 ~~~~i~-~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~ 262 (375)
....+. -..++|.|..++.+. +..+...++|++++|+..+..+.+++.+.|+++.|+.+|.+.+..++..|++++.|
T Consensus 228 P~P~~~~v~~iLp~L~~ll~~~--D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGN 305 (514)
T KOG0166|consen 228 PSPPFDVVAPILPALLRLLHST--DEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGN 305 (514)
T ss_pred CCCcHHHHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccc
Confidence 333332 256899999999987 55677889999999997665555555589999999999999999999999999999
Q ss_pred hcccCcHHHHHHHHHcCChHHHHHHhh-hCCHHHHHHHHHHHHHhhcCChh---hhhhhhhHHHHHHHHhhcCCChHHHH
Q 017249 263 LCQSCRDKYRQLILKEGAIPGLLRLTV-EGTFEAQERARTLLDLLRDTPQE---KRLSSSVLEKIVYDIAARVDGADKAA 338 (375)
Q Consensus 263 l~~~~~~~~~~~l~~~g~v~~L~~ll~-~~~~~~~~~A~~~L~~l~~~~~~---~~~~~g~~~~l~~~l~~~~~g~~~~~ 338 (375)
++.++ +...+.++..|+++.|..++. +....+++.|+|++.|++-..++ .++..|++|.|+..|. .+.-+.+
T Consensus 306 IvtG~-d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li~~l~---~~ef~~r 381 (514)
T KOG0166|consen 306 IVTGS-DEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITAGNQEQIQAVIDANLIPVLINLLQ---TAEFDIR 381 (514)
T ss_pred eeecc-HHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHHHHHh---ccchHHH
Confidence 99988 577888999999999999998 55667999999999999988754 7889999999999886 5668999
Q ss_pred HHHHHHHHHHHHHHHH
Q 017249 339 ETAKRLLQDMVQRSME 354 (375)
Q Consensus 339 ~~a~~~l~~l~~~s~~ 354 (375)
..|++++.|+...+-+
T Consensus 382 KEAawaIsN~ts~g~~ 397 (514)
T KOG0166|consen 382 KEAAWAISNLTSSGTP 397 (514)
T ss_pred HHHHHHHHhhcccCCH
Confidence 9999999999765543
No 7
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.98 E-value=2e-30 Score=226.78 Aligned_cols=327 Identities=22% Similarity=0.277 Sum_probs=290.9
Q ss_pred hhHHHHHhhHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHH
Q 017249 15 EEEAWNQRKQALIEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIESSLLALLN 94 (375)
Q Consensus 15 ~~~~~~~~~~~~l~~Lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~~~~~~~~~a~~~L~~ 94 (375)
++++..+...|++.++.++-++.+..+|..+..+|.++.... ++|..++..|++|.||+++++++.++|..++.++.+
T Consensus 157 d~nk~kiA~sGaL~pltrLakskdirvqrnatgaLlnmThs~--EnRr~LV~aG~lpvLVsll~s~d~dvqyycttaisn 234 (550)
T KOG4224|consen 157 DSNKVKIARSGALEPLTRLAKSKDIRVQRNATGALLNMTHSR--ENRRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISN 234 (550)
T ss_pred ccchhhhhhccchhhhHhhcccchhhHHHHHHHHHHHhhhhh--hhhhhhhccCCchhhhhhhccCChhHHHHHHHHhhh
Confidence 567888999999999999778999999999999999999887 999999999999999999999999999999999999
Q ss_pred hhccChhhHHHHHHcC--ChHHHHHhhcCCChHHHHHHHHHHHHhhccCCChhHHHhcCChHHHHHHhccCCHHHHHHHH
Q 017249 95 LAVRNERNKVKIATAG--AIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHSGSVQGRVDAV 172 (375)
Q Consensus 95 L~~~~~~~r~~i~~~g--~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~ 172 (375)
++- +...|..+.+.+ .+|.|+++++++++.++..|..+|.||+.+.+.+..+++.|++|.++++|+++.........
T Consensus 235 IaV-d~~~Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~Yq~eiv~ag~lP~lv~Llqs~~~plilasV 313 (550)
T KOG4224|consen 235 IAV-DRRARKILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDTEYQREIVEAGSLPLLVELLQSPMGPLILASV 313 (550)
T ss_pred hhh-hHHHHHHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcccchhhhHHHhcCCchHHHHHHhCcchhHHHHHH
Confidence 998 678999999987 99999999999999999999999999999999999999999999999999999888888888
Q ss_pred HHHHHhccCCCCchhhhhcCCcHHHHHHhhhcccchHHHHHHHHHHHHhhC-ChhhhHHHhhccCcHHHHHHHhccCChH
Q 017249 173 TALHYLSTCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSS-SEEGRIAITNSDGGILTLVETVEDGSLV 251 (375)
Q Consensus 173 ~~L~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~-~~~~~~~~~~~~g~v~~Lv~lL~~~~~~ 251 (375)
.++.|++..+-|...|++.|.+.+||++|+.++ .+.++..|...|+||+. +..+++.+. +.|+++.+..++.++.-.
T Consensus 314 aCIrnisihplNe~lI~dagfl~pLVrlL~~~d-nEeiqchAvstLrnLAasse~n~~~i~-esgAi~kl~eL~lD~pvs 391 (550)
T KOG4224|consen 314 ACIRNISIHPLNEVLIADAGFLRPLVRLLRAGD-NEEIQCHAVSTLRNLAASSEHNVSVIR-ESGAIPKLIELLLDGPVS 391 (550)
T ss_pred HHHhhcccccCcccceecccchhHHHHHHhcCC-chhhhhhHHHHHHHHhhhhhhhhHHHh-hcCchHHHHHHHhcCChh
Confidence 999999999999999999999999999999875 45688899999999998 566666666 799999999999999999
Q ss_pred HHHHHHHHHHHhcccCcHHHHHHHHHcCChHHHHHHhhhCCHHHHHHHHHHHHHhhcCChh--hhhh------hhhHHHH
Q 017249 252 STQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDTPQE--KRLS------SSVLEKI 323 (375)
Q Consensus 252 ~~~~a~~~L~~l~~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~~--~~~~------~g~~~~l 323 (375)
+|+.-..++..|+..+ ..+..+.+.|.++.|+.+..+.+.+++-+|+.+|.|+++.... ++++ .|.-..|
T Consensus 392 vqseisac~a~Lal~d--~~k~~lld~gi~~iLIp~t~s~s~Ev~gNaAaAL~Nlss~v~~YarviEawd~P~~gi~g~L 469 (550)
T KOG4224|consen 392 VQSEISACIAQLALND--NDKEALLDSGIIPILIPWTGSESEEVRGNAAAALINLSSDVEHYARVIEAWDHPVQGIQGRL 469 (550)
T ss_pred HHHHHHHHHHHHHhcc--ccHHHHhhcCCcceeecccCccchhhcccHHHHHHhhhhhhHHHHHHHHHhcCcchhHHHHH
Confidence 9999999999998886 4588999999999999999999999999999999999987744 2222 4455566
Q ss_pred HHHHhhcCCChHHHHHHHHHHHHHHHHH
Q 017249 324 VYDIAARVDGADKAAETAKRLLQDMVQR 351 (375)
Q Consensus 324 ~~~l~~~~~g~~~~~~~a~~~l~~l~~~ 351 (375)
++.+.+ ...--+..|.+.+++|.+.
T Consensus 470 ~Rfl~S---~~~tf~hia~wTI~qLle~ 494 (550)
T KOG4224|consen 470 ARFLAS---HELTFRHIARWTIQQLLED 494 (550)
T ss_pred HHHHhh---hHHHHHHHHHHHHHHHHHh
Confidence 666652 2255668888888888654
No 8
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=99.97 E-value=2.5e-29 Score=218.10 Aligned_cols=318 Identities=19% Similarity=0.207 Sum_probs=271.5
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhh-CCCCHHHHHHHHHHHHHhhccChhhH
Q 017249 25 ALIEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLML-VSPNLDAIESSLLALLNLAVRNERNK 103 (375)
Q Consensus 25 ~~l~~Lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L-~~~~~~~~~~a~~~L~~L~~~~~~~r 103 (375)
.-+|.|...|.|+|.+.+..|..-++.+.........+.+++.|++|.+++++ +....-.+..|+|+|.|++.+....-
T Consensus 71 ~elp~lt~~l~SdDie~q~qav~kFR~~LS~E~~PPIq~VIdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QT 150 (526)
T COG5064 71 SELPQLTQQLFSDDIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQT 150 (526)
T ss_pred hhhHHHHHHHhhhHHHHHHHHHHHHHHHhccccCCCchhHHhccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccce
Confidence 35799999999999999999999999988766345677889999999999999 44555668899999999999877666
Q ss_pred HHHHHcCChHHHHHhhcCCChHHHHHHHHHHHHhhccCC-ChhHHHhcCChHHHHHHhccCCH--HHHHHHHHHHHHhcc
Q 017249 104 VKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAP-NKPAIAASGAAPLLVQILHSGSV--QGRVDAVTALHYLST 180 (375)
Q Consensus 104 ~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~-~~~~i~~~~~l~~L~~lL~~~~~--~~~~~a~~~L~~L~~ 180 (375)
.-+++.|++|.++++|.+.+.++++.++|+|.|++.+.+ .+..+...|++++++.+|.+... ...+++.|+|.|||.
T Consensus 151 kvVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcR 230 (526)
T COG5064 151 KVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCR 230 (526)
T ss_pred EEEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhC
Confidence 677889999999999999999999999999999999876 68888899999999999987754 789999999999997
Q ss_pred CC---CCchhhhhcCCcHHHHHHhhhcccchHHHHHHHHHHHHhhCChhhhHHHhhccCcHHHHHHHhccCChHHHHHHH
Q 017249 181 CK---ENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAV 257 (375)
Q Consensus 181 ~~---~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~a~ 257 (375)
+. ++...+ +..+|.|.+++.+. ++.+...|+|+++.|+..+..+.+++.+.|...+|+++|.+++..++..|+
T Consensus 231 GknP~P~w~~i--sqalpiL~KLiys~--D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~sa~iqtPal 306 (526)
T COG5064 231 GKNPPPDWSNI--SQALPILAKLIYSR--DPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPAL 306 (526)
T ss_pred CCCCCCchHHH--HHHHHHHHHHHhhc--CHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCccccccCHHH
Confidence 62 233333 34789999999876 445667799999999987766666665899999999999999999999999
Q ss_pred HHHHHhcccCcHHHHHHHHHcCChHHHHHHhhhCCHHHHHHHHHHHHHhhcCChh---hhhhhhhHHHHHHHHhhcCCCh
Q 017249 258 GALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDTPQE---KRLSSSVLEKIVYDIAARVDGA 334 (375)
Q Consensus 258 ~~L~~l~~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~~---~~~~~g~~~~l~~~l~~~~~g~ 334 (375)
+.+.|+..+++ ...+.++..|+++.+..++.+....+|+.|+|.+.|++-...+ .++....+|+|+..|. ...
T Consensus 307 R~vGNIVTG~D-~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWTiSNITAGnteqiqavid~nliPpLi~lls---~ae 382 (526)
T COG5064 307 RSVGNIVTGSD-DQTQVIINCGALKAFRSLLSSPKENIRKEACWTISNITAGNTEQIQAVIDANLIPPLIHLLS---SAE 382 (526)
T ss_pred HhhcCeeecCc-cceehheecccHHHHHHHhcChhhhhhhhhheeecccccCCHHHHHHHHhcccchHHHHHHH---HHH
Confidence 99999999884 5677889999999999999999899999999999999877633 6788999999998885 334
Q ss_pred HHHHHHHHHHHHHHHH
Q 017249 335 DKAAETAKRLLQDMVQ 350 (375)
Q Consensus 335 ~~~~~~a~~~l~~l~~ 350 (375)
-+.+..|++++-+...
T Consensus 383 ~k~kKEACWAisNats 398 (526)
T COG5064 383 YKIKKEACWAISNATS 398 (526)
T ss_pred HHHHHHHHHHHHhhhc
Confidence 7788899998888763
No 9
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=99.92 E-value=3.1e-22 Score=196.32 Aligned_cols=332 Identities=19% Similarity=0.216 Sum_probs=276.1
Q ss_pred chhhhHHHHHhhHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHH
Q 017249 12 TDQEEEAWNQRKQALIEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIESSLLA 91 (375)
Q Consensus 12 ~~~~~~~~~~~~~~~l~~Lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~~~~~~~~~a~~~ 91 (375)
+.|..+...+...+.++.|++.|.+++.+....++.+|.+|+... +++..|.+.|+++.|++++.+++.+++..+++.
T Consensus 277 Aed~~ve~kM~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~--ENK~~m~~~giV~kL~kLl~s~~~~l~~~aLrl 354 (708)
T PF05804_consen 277 AEDPRVELKMVNKGIVSLLVKCLDRENEELLILAVTFLKKLSIFK--ENKDEMAESGIVEKLLKLLPSENEDLVNVALRL 354 (708)
T ss_pred hcChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCH--HHHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHH
Confidence 456677788899999999999999999999999999999999998 899999999999999999999999999999999
Q ss_pred HHHhhccChhhHHHHHHcCChHHHHHhhcCCChHHHHHHHHHHHHhhccCCChhHHHhcCChHHHHHHhcc-CCHHHHHH
Q 017249 92 LLNLAVRNERNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHS-GSVQGRVD 170 (375)
Q Consensus 92 L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~l~~L~~lL~~-~~~~~~~~ 170 (375)
|.||+. ++..|..|+..|++|+|+.+|.++ ..+..++.+|.++|.+++++..+...++++.+++++.. ++..+...
T Consensus 355 L~NLSf-d~~~R~~mV~~GlIPkLv~LL~d~--~~~~val~iLy~LS~dd~~r~~f~~TdcIp~L~~~Ll~~~~~~v~~e 431 (708)
T PF05804_consen 355 LFNLSF-DPELRSQMVSLGLIPKLVELLKDP--NFREVALKILYNLSMDDEARSMFAYTDCIPQLMQMLLENSEEEVQLE 431 (708)
T ss_pred HHHhCc-CHHHHHHHHHCCCcHHHHHHhCCC--chHHHHHHHHHHhccCHhhHHHHhhcchHHHHHHHHHhCCCccccHH
Confidence 999999 688999999999999999999754 45677999999999999999999989999999998755 45667778
Q ss_pred HHHHHHHhccCCCCchhhhhcCCcHHHHHHhhhcc------------------------------------cchHHHHHH
Q 017249 171 AVTALHYLSTCKENSSPILDATAVPPLINLLKDCK------------------------------------KYSKFAEKA 214 (375)
Q Consensus 171 a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~~------------------------------------~~~~~~~~a 214 (375)
+++++.||+.++.+.+.+.+.++++.|++...+.. +++...-.+
T Consensus 432 liaL~iNLa~~~rnaqlm~~g~gL~~L~~ra~~~~D~lLlKlIRNiS~h~~~~k~~f~~~i~~L~~~v~~~~~ee~~vE~ 511 (708)
T PF05804_consen 432 LIALLINLALNKRNAQLMCEGNGLQSLMKRALKTRDPLLLKLIRNISQHDGPLKELFVDFIGDLAKIVSSGDSEEFVVEC 511 (708)
T ss_pred HHHHHHHHhcCHHHHHHHHhcCcHHHHHHHHHhcccHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhcCCcHHHHHHH
Confidence 88999999999888888887777777665332211 133455668
Q ss_pred HHHHHHhhCChhhhHHHhhccCcHHHHHHHhccC--ChHHHHHHHHHHHHhcccCcHHHHHHHHHcCChHHHHHHhhh--
Q 017249 215 TALLEILSSSEEGRIAITNSDGGILTLVETVEDG--SLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVE-- 290 (375)
Q Consensus 215 ~~~L~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~--~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~g~v~~L~~ll~~-- 290 (375)
+++|+||...+.....++.+.+.+|.|..+|..+ .+.+..+++..++.+|... ++...+.+.|.++.|+.++..
T Consensus 512 LGiLaNL~~~~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~d~--~~A~lL~~sgli~~Li~LL~~kq 589 (708)
T PF05804_consen 512 LGILANLTIPDLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLASDP--ECAPLLAKSGLIPTLIELLNAKQ 589 (708)
T ss_pred HHHHHhcccCCcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHCCH--HHHHHHHhCChHHHHHHHHHhhC
Confidence 8999999877667777776789999999999764 3578888999999988764 778888899999999999985
Q ss_pred CCHHHHHHHHHHHHHhhcCChh--hhh-hhhhHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHH
Q 017249 291 GTFEAQERARTLLDLLRDTPQE--KRL-SSSVLEKIVYDIAARVDGADKAAETAKRLLQDMVQRSM 353 (375)
Q Consensus 291 ~~~~~~~~A~~~L~~l~~~~~~--~~~-~~g~~~~l~~~l~~~~~g~~~~~~~a~~~l~~l~~~s~ 353 (375)
.|.+..-..+.+...+-.|... .++ +.+++.-|+..++ |..+..+..+-.+|..+.....
T Consensus 590 eDdE~VlQil~~f~~ll~h~~tr~~ll~~~~~~~ylidL~~---d~N~~ir~~~d~~Ldii~e~d~ 652 (708)
T PF05804_consen 590 EDDEIVLQILYVFYQLLFHEETREVLLKETEIPAYLIDLMH---DKNAEIRKVCDNALDIIAEYDE 652 (708)
T ss_pred chHHHHHHHHHHHHHHHcChHHHHHHHhccchHHHHHHHhc---CCCHHHHHHHHHHHHHHHHhCH
Confidence 4688888888888888777733 343 3667777887775 5668889999999888875543
No 10
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=99.88 E-value=1.4e-19 Score=177.75 Aligned_cols=297 Identities=20% Similarity=0.221 Sum_probs=241.9
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhccChhhHHHHH
Q 017249 28 EELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIESSLLALLNLAVRNERNKVKIA 107 (375)
Q Consensus 28 ~~Lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~~~~~~~~~a~~~L~~L~~~~~~~r~~i~ 107 (375)
+++-.+++.. ......++..|.|++.+. .....|.+.|+++.|+++|.+++.++...++..|.+|+. ..+++..|.
T Consensus 253 kk~~~l~~kQ-eqLlrv~~~lLlNLAed~--~ve~kM~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi-~~ENK~~m~ 328 (708)
T PF05804_consen 253 KKLQTLIRKQ-EQLLRVAFYLLLNLAEDP--RVELKMVNKGIVSLLVKCLDRENEELLILAVTFLKKLSI-FKENKDEMA 328 (708)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHhcCh--HHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcC-CHHHHHHHH
Confidence 3444444332 334456778899999998 888889999999999999999999999999999999999 678999999
Q ss_pred HcCChHHHHHhhcCCChHHHHHHHHHHHHhhccCCChhHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCCCCchh
Q 017249 108 TAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTCKENSSP 187 (375)
Q Consensus 108 ~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~ 187 (375)
+.|++++|++++.+++.+++..++.+|.|||.+++.+..++..|++|.|+.+|.+++ .+..++.+|++||..++.+..
T Consensus 329 ~~giV~kL~kLl~s~~~~l~~~aLrlL~NLSfd~~~R~~mV~~GlIPkLv~LL~d~~--~~~val~iLy~LS~dd~~r~~ 406 (708)
T PF05804_consen 329 ESGIVEKLLKLLPSENEDLVNVALRLLFNLSFDPELRSQMVSLGLIPKLVELLKDPN--FREVALKILYNLSMDDEARSM 406 (708)
T ss_pred HcCCHHHHHHHhcCCCHHHHHHHHHHHHHhCcCHHHHHHHHHCCCcHHHHHHhCCCc--hHHHHHHHHHHhccCHhhHHH
Confidence 999999999999999999999999999999999999999999999999999998764 456789999999999999999
Q ss_pred hhhcCCcHHHHHHhhhcccchHHHHHHHHHHHHhhCChhhhHHHhhccCcHHHHHHHh----------------------
Q 017249 188 ILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETV---------------------- 245 (375)
Q Consensus 188 i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~Lv~lL---------------------- 245 (375)
+...+++|.+++++.+++. ..+...+.+++.|++.++.+.+.+. +.|+++.|+...
T Consensus 407 f~~TdcIp~L~~~Ll~~~~-~~v~~eliaL~iNLa~~~rnaqlm~-~g~gL~~L~~ra~~~~D~lLlKlIRNiS~h~~~~ 484 (708)
T PF05804_consen 407 FAYTDCIPQLMQMLLENSE-EEVQLELIALLINLALNKRNAQLMC-EGNGLQSLMKRALKTRDPLLLKLIRNISQHDGPL 484 (708)
T ss_pred HhhcchHHHHHHHHHhCCC-ccccHHHHHHHHHHhcCHHHHHHHH-hcCcHHHHHHHHHhcccHHHHHHHHHHHhcCchH
Confidence 9889999999999877643 3444556788888888888887777 456666655432
Q ss_pred ---------------cc-CChHHHHHHHHHHHHhcccCcHHHHHHHHHcCChHHHHHHhhhC--CHHHHHHHHHHHHHhh
Q 017249 246 ---------------ED-GSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEG--TFEAQERARTLLDLLR 307 (375)
Q Consensus 246 ---------------~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~g~v~~L~~ll~~~--~~~~~~~A~~~L~~l~ 307 (375)
.. .++...-.++++|.|+...+. +....+.+.+.+|.|..++..+ .+++.-.++.+++.++
T Consensus 485 k~~f~~~i~~L~~~v~~~~~ee~~vE~LGiLaNL~~~~l-d~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla 563 (708)
T PF05804_consen 485 KELFVDFIGDLAKIVSSGDSEEFVVECLGILANLTIPDL-DWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLA 563 (708)
T ss_pred HHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHhcccCCc-CHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHH
Confidence 11 245566688999999987652 3345555689999999998754 4678889999999998
Q ss_pred cCChh--hhhhhhhHHHHHHHHhhcCCC
Q 017249 308 DTPQE--KRLSSSVLEKIVYDIAARVDG 333 (375)
Q Consensus 308 ~~~~~--~~~~~g~~~~l~~~l~~~~~g 333 (375)
..+.. .+.+.|+++.|+..|....+.
T Consensus 564 ~d~~~A~lL~~sgli~~Li~LL~~kqeD 591 (708)
T PF05804_consen 564 SDPECAPLLAKSGLIPTLIELLNAKQED 591 (708)
T ss_pred CCHHHHHHHHhCChHHHHHHHHHhhCch
Confidence 87643 566789999999988765554
No 11
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=99.87 E-value=3.3e-20 Score=178.31 Aligned_cols=332 Identities=19% Similarity=0.199 Sum_probs=261.6
Q ss_pred hHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhccChh-
Q 017249 23 KQALIEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIESSLLALLNLAVRNER- 101 (375)
Q Consensus 23 ~~~~l~~Lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~~~~~~~~~a~~~L~~L~~~~~~- 101 (375)
+.-.+|..|.+|.+.++..|..|+..+..++..+ .+.+..+.+.|+|+.||.+|.+...+++.+|+++|+||..++..
T Consensus 231 ~d~~lpe~i~mL~~q~~~~qsnaaaylQHlcfgd-~~ik~~vrqlggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~ 309 (717)
T KOG1048|consen 231 RDPTLPEVISMLMSQDPSVQSNAAAYLQHLCFGD-NKIKSRVRQLGGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTD 309 (717)
T ss_pred cccccHHHHHHHhccChhhhHHHHHHHHHHHhhh-HHHHHHHHHhccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCc
Confidence 4556789999999999999999999999999999 88888888999999999999999999999999999999987766
Q ss_pred -hHHHHHHcCChHHHHHhhcC-CChHHHHHHHHHHHHhhccCCChhHHHhcCChHHHHHHhcc--------------CCH
Q 017249 102 -NKVKIATAGAIPPLVELLKF-QNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHS--------------GSV 165 (375)
Q Consensus 102 -~r~~i~~~g~i~~Lv~lL~~-~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~l~~L~~lL~~--------------~~~ 165 (375)
++..+.+.++|+.++++|+. .|.++++.+..+||||+.++..+..+... .+..|.+.+-. .+.
T Consensus 310 ~NKlai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~D~lK~~ii~~-al~tLt~~vI~P~Sgw~~~~~~~~~~~~ 388 (717)
T KOG1048|consen 310 SNKLAIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSNDALKMLIITS-ALSTLTDNVIIPHSGWEEEPAPRKAEDS 388 (717)
T ss_pred ccchhhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccchhHHHHHHHHH-HHHHHHHhhcccccccCCCCcccccccc
Confidence 99999999999999999987 59999999999999999997777666533 34555544311 125
Q ss_pred HHHHHHHHHHHHhcc-CCCCchhhhh-cCCcHHHHHHhhh----cccchHHHHHHHHHHHHhhCChh-----hhHHHhh-
Q 017249 166 QGRVDAVTALHYLST-CKENSSPILD-ATAVPPLINLLKD----CKKYSKFAEKATALLEILSSSEE-----GRIAITN- 233 (375)
Q Consensus 166 ~~~~~a~~~L~~L~~-~~~~~~~i~~-~g~i~~Lv~ll~~----~~~~~~~~~~a~~~L~~l~~~~~-----~~~~~~~- 233 (375)
++..++..+|.|++. ..+.++.+.+ .|.|..|+..+.+ +..+....++|.-+|+||+..-+ ...+...
T Consensus 389 ~vf~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSYrl~~Evp~~~~~~~~~ 468 (717)
T KOG1048|consen 389 TVFRNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSYRLEAEVPPKYRQVLAN 468 (717)
T ss_pred eeeehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCchhhhhcCHhhhhHhhc
Confidence 678899999999997 5677888876 6999999988874 23345677999999999986322 0000000
Q ss_pred -----------------------------------------------ccCcHHHHHHHhc-cCChHHHHHHHHHHHHhcc
Q 017249 234 -----------------------------------------------SDGGILTLVETVE-DGSLVSTQHAVGALLSLCQ 265 (375)
Q Consensus 234 -----------------------------------------------~~g~v~~Lv~lL~-~~~~~~~~~a~~~L~~l~~ 265 (375)
..-+|..-+.+|. +.++.+.+.++++|-|++.
T Consensus 469 ~~~~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA 548 (717)
T KOG1048|consen 469 IARLPGVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLALSKNDNTLEASAGALQNLTA 548 (717)
T ss_pred ccccccCCCcccccccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHHHHHhcchHHHHHhhhhHhhhhc
Confidence 0111222123332 4568899999999999998
Q ss_pred cCcH---HHHHHH-HHcCChHHHHHHhhhCCHHHHHHHHHHHHHhhcCChh-hhhhhhhHHHHHHHHhhcCCC---hHHH
Q 017249 266 SCRD---KYRQLI-LKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDTPQE-KRLSSSVLEKIVYDIAARVDG---ADKA 337 (375)
Q Consensus 266 ~~~~---~~~~~l-~~~g~v~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~~-~~~~~g~~~~l~~~l~~~~~g---~~~~ 337 (375)
+... ..+..+ .++.+.+.|+++++.+++.+.+.++.+|+|++.+.+. ..+.-++++.|+..|..+..+ +.+.
T Consensus 549 ~~~~~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNls~d~rnk~ligk~a~~~lv~~Lp~~~~~~~~sedt 628 (717)
T KOG1048|consen 549 GLWTWSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNLSRDIRNKELIGKYAIPDLVRCLPGSGPSTSLSEDT 628 (717)
T ss_pred cCCcchhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhhccCchhhhhhhcchHHHHHHhCcCCCCCcCchHHH
Confidence 7542 334445 5688999999999999999999999999999999966 678888999999998754441 2666
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 017249 338 AETAKRLLQDMVQRSMELS 356 (375)
Q Consensus 338 ~~~a~~~l~~l~~~s~~~~ 356 (375)
...+...|.+|++.++..-
T Consensus 629 v~~vc~tl~niv~~~~~nA 647 (717)
T KOG1048|consen 629 VRAVCHTLNNIVRKNVLNA 647 (717)
T ss_pred HHHHHHhHHHHHHHhHHHH
Confidence 7777888888887766543
No 12
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=99.86 E-value=6.9e-21 Score=190.19 Aligned_cols=269 Identities=22% Similarity=0.217 Sum_probs=231.2
Q ss_pred HHHH-HHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCCC------------CHHHHHHHHHHHHHhhccChhhHHHH
Q 017249 40 ETKI-EAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSP------------NLDAIESSLLALLNLAVRNERNKVKI 106 (375)
Q Consensus 40 ~~~~-~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~~------------~~~~~~~a~~~L~~L~~~~~~~r~~i 106 (375)
+-++ .|+..|.+++++. ++|+.|-+.|++..+-++|.-. ...++..+..+|.||+.++..++..+
T Consensus 312 ~H~lcaA~~~lMK~SFDE--EhR~aM~ELG~LqAIaeLl~vDh~mhgp~tnd~~~~aLRrYa~MALTNLTFGDv~NKa~L 389 (2195)
T KOG2122|consen 312 EHQLCAALCTLMKLSFDE--EHRHAMNELGGLQAIAELLQVDHEMHGPETNDGECNALRRYAGMALTNLTFGDVANKATL 389 (2195)
T ss_pred chhhHHHHHHHHHhhccH--HHHHHHHHhhhHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhccccccccchhhh
Confidence 4455 6778888888887 9999999999999998877421 24689999999999999999999999
Q ss_pred HH-cCChHHHHHhhcCCChHHHHHHHHHHHHhhccCC-C-hhHHHhcCChHHHHHHh-ccCCHHHHHHHHHHHHHhccC-
Q 017249 107 AT-AGAIPPLVELLKFQNGTLRELAAAAILTLSAAAP-N-KPAIAASGAAPLLVQIL-HSGSVQGRVDAVTALHYLSTC- 181 (375)
Q Consensus 107 ~~-~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~-~-~~~i~~~~~l~~L~~lL-~~~~~~~~~~a~~~L~~L~~~- 181 (375)
+. -|+++.+|..|.+..+++.+..+.+|.||++..+ + +..+.+.|.+..|..+- +..........+.+||||+.+
T Consensus 390 Cs~rgfMeavVAQL~s~peeL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~~al~~~kEsTLKavLSALWNLSAHc 469 (2195)
T KOG2122|consen 390 CSQRGFMEAVVAQLISAPEELLQVYASVLRNLSWRADSNMKKVLRETGSVTALAACALRNKKESTLKAVLSALWNLSAHC 469 (2195)
T ss_pred hhhhhHHHHHHHHHhcChHHHHHHHHHHHHhccccccccHHHHHHhhhhHHHHHHHHHHhcccchHHHHHHHHhhhhhcc
Confidence 98 6899999999999999999999999999999855 3 66777889999998874 444557788999999999966
Q ss_pred CCCchhhhh-cCCcHHHHHHhhhc--ccchHHHHHHHHHHHHhhC----ChhhhHHHhhccCcHHHHHHHhccCChHHHH
Q 017249 182 KENSSPILD-ATAVPPLINLLKDC--KKYSKFAEKATALLEILSS----SEEGRIAITNSDGGILTLVETVEDGSLVSTQ 254 (375)
Q Consensus 182 ~~~~~~i~~-~g~i~~Lv~ll~~~--~~~~~~~~~a~~~L~~l~~----~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~ 254 (375)
.+|+..|.. .|++..||.+|... ...-.+.+.+.++|+|++. ++..|+ ++..++++..|+++|++.+-.+..
T Consensus 470 teNKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQ-ILR~~NCLq~LLQ~LKS~SLTiVS 548 (2195)
T KOG2122|consen 470 TENKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQ-ILRRHNCLQTLLQHLKSHSLTIVS 548 (2195)
T ss_pred cccchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccchHHH-HHHHhhHHHHHHHHhhhcceEEee
Confidence 689999987 69999999999865 2234678999999999875 344454 444799999999999999999999
Q ss_pred HHHHHHHHhcccCcHHHHHHHHHcCChHHHHHHhhhCCHHHHHHHHHHHHHhhcCChh
Q 017249 255 HAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDTPQE 312 (375)
Q Consensus 255 ~a~~~L~~l~~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~~ 312 (375)
++|++||||...+ ++.++.+++.|+|+.|..++++.+..+-+-++.+|.||-.+.+.
T Consensus 549 NaCGTLWNLSAR~-p~DQq~LwD~gAv~mLrnLIhSKhkMIa~GSaaALrNLln~RPA 605 (2195)
T KOG2122|consen 549 NACGTLWNLSARS-PEDQQMLWDDGAVPMLRNLIHSKHKMIAMGSAAALRNLLNFRPA 605 (2195)
T ss_pred cchhhhhhhhcCC-HHHHHHHHhcccHHHHHHHHhhhhhhhhhhHHHHHHHHhcCCch
Confidence 9999999999988 57799999999999999999999999999999999999888753
No 13
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.84 E-value=1.1e-18 Score=151.89 Aligned_cols=291 Identities=14% Similarity=0.129 Sum_probs=246.4
Q ss_pred hHHHHHhhHhHHHHHHHHhc--CCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCCC-CHHHHHHHHHHH
Q 017249 16 EEAWNQRKQALIEELSDKLI--NGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSP-NLDAIESSLLAL 92 (375)
Q Consensus 16 ~~~~~~~~~~~l~~Lv~~L~--s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~~-~~~~~~~a~~~L 92 (375)
...+.+.+..++.-++.+|. .++.++...-+..+..-|... +.+|..+.+.++++.+.+.|... ..++.....+++
T Consensus 136 ~~qpdl~da~g~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~h-E~nrQ~~m~~~il~Li~~~l~~~gk~~~VRel~~a~ 214 (461)
T KOG4199|consen 136 HKQPDLFDAEAMAVVLKLLALKVESEEVTLLTLQWLQKACIMH-EVNRQLFMELKILELILQVLNREGKTRTVRELYDAI 214 (461)
T ss_pred cCCcchhccccHHHHHHHHhcccchHHHHHHHHHHHHHHHHHh-HHHHHHHHHhhHHHHHHHHHcccCccHHHHHHHHHH
Confidence 34456777788888898886 667788888899999999988 89999999999999999777554 446889999999
Q ss_pred HHhhccCh---------hhHHHHHHcCChHHHHHhhcCC-ChHHHHHHHHHHHHhhccCCChhHHHhcCChHHHHHHhcc
Q 017249 93 LNLAVRNE---------RNKVKIATAGAIPPLVELLKFQ-NGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHS 162 (375)
Q Consensus 93 ~~L~~~~~---------~~r~~i~~~g~i~~Lv~lL~~~-~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~l~~L~~lL~~ 162 (375)
+.|..++. ..-..|.+.|++..|++.+.-. +|.+......+|..|+..++....+.+.|++..|++++.+
T Consensus 215 r~l~~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp~~L~~l~~tl~~lAVr~E~C~~I~e~GGl~tl~~~i~d 294 (461)
T KOG4199|consen 215 RALLTDDDIRVVFGQAHGHARTIAKEGILTALTEALQAGIDPDSLVSLSTTLKALAVRDEICKSIAESGGLDTLLRCIDD 294 (461)
T ss_pred HHhcCCCceeeecchhhHHHHHHHHhhhHHHHHHHHHccCCccHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHhh
Confidence 99987532 1335677888999999999876 7889999999999999999999999999999999999987
Q ss_pred CC----HHHHHHHHHHHHHhccCCCCchhhhhcCCcHHHHHHhhhcccchHHHHHHHHHHHHhhC-ChhhhHHHhhccCc
Q 017249 163 GS----VQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSS-SEEGRIAITNSDGG 237 (375)
Q Consensus 163 ~~----~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~-~~~~~~~~~~~~g~ 237 (375)
.+ .+....++.+|..|+.+++++..|++.|+.+.++.++.....++.+.+.++.+++-||- .|++...++ +.|+
T Consensus 295 ~n~~~~r~l~k~~lslLralAG~DsvKs~IV~~gg~~~ii~l~~~h~~~p~Vi~~~~a~i~~l~LR~pdhsa~~i-e~G~ 373 (461)
T KOG4199|consen 295 SNEQGNRTLAKTCLSLLRALAGSDSVKSTIVEKGGLDKIITLALRHSDDPLVIQEVMAIISILCLRSPDHSAKAI-EAGA 373 (461)
T ss_pred hchhhHHHHHHHHHHHHHHHhCCCchHHHHHHhcChHHHHHHHHHcCCChHHHHHHHHHHHHHHhcCcchHHHHH-hcch
Confidence 43 34567889999999999999999999999999999998877788899999999999985 788888888 7899
Q ss_pred HHHHHHHhccC--ChHHHHHHHHHHHHhcccCcHHHHHHHHHcCChHHHHHHhhhCCHHHHHHHHHHHHHhhcCC
Q 017249 238 ILTLVETVEDG--SLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDTP 310 (375)
Q Consensus 238 v~~Lv~lL~~~--~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~~~~~A~~~L~~l~~~~ 310 (375)
-...++.++.. ...++.+||+.++|++..+ .+++..+ =..+++.|+......++.+...|..+|+-|.++.
T Consensus 374 a~~avqAmkahP~~a~vQrnac~~IRNiv~rs-~~~~~~~-l~~GiE~Li~~A~~~h~tce~~akaALRDLGc~v 446 (461)
T KOG4199|consen 374 ADLAVQAMKAHPVAAQVQRNACNMIRNIVVRS-AENRTIL-LANGIEKLIRTAKANHETCEAAAKAALRDLGCDV 446 (461)
T ss_pred HHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhh-hhccchH-HhccHHHHHHHHHhcCccHHHHHHHHHHhcCcch
Confidence 99999998753 3678999999999999987 3545544 4566888988888888999999999999998876
No 14
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.82 E-value=2.1e-17 Score=144.00 Aligned_cols=315 Identities=16% Similarity=0.187 Sum_probs=247.9
Q ss_pred HhHHHHHHHHh---cCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhC--CCCHHHHHHHHHHHHHhhcc
Q 017249 24 QALIEELSDKL---INGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLV--SPNLDAIESSLLALLNLAVR 98 (375)
Q Consensus 24 ~~~l~~Lv~~L---~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~--~~~~~~~~~a~~~L~~L~~~ 98 (375)
.+..+.++..+ .+++.....+++.+|..+.... |. +.+..+...++.+|. .++.++....+..+..-|..
T Consensus 103 ~ga~~~~it~~~la~~~~~~~l~ksL~al~~lt~~q-pd----l~da~g~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~ 177 (461)
T KOG4199|consen 103 NGAHDALITLLELAESPNESVLKKSLEAINSLTHKQ-PD----LFDAEAMAVVLKLLALKVESEEVTLLTLQWLQKACIM 177 (461)
T ss_pred CCCcchhhhHHHHhhCCchhHHHHHHHHHHHhhcCC-cc----hhccccHHHHHHHHhcccchHHHHHHHHHHHHHHHHH
Confidence 33444444433 3678888889999998888777 43 455778888999885 45678889999999999988
Q ss_pred ChhhHHHHHHcCChHHHHHhhcCC-ChHHHHHHHHHHHHhhccCCCh----------hHHHhcCChHHHHHHhccC-CHH
Q 017249 99 NERNKVKIATAGAIPPLVELLKFQ-NGTLRELAAAAILTLSAAAPNK----------PAIAASGAAPLLVQILHSG-SVQ 166 (375)
Q Consensus 99 ~~~~r~~i~~~g~i~~Lv~lL~~~-~~~~~~~a~~~L~~Ls~~~~~~----------~~i~~~~~l~~L~~lL~~~-~~~ 166 (375)
++.+|+.+.+.++.+.+.+.|... ...+.....++++.|..+++.+ ..|...|++..|++.++.+ ++.
T Consensus 178 hE~nrQ~~m~~~il~Li~~~l~~~gk~~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp~ 257 (461)
T KOG4199|consen 178 HEVNRQLFMELKILELILQVLNREGKTRTVRELYDAIRALLTDDDIRVVFGQAHGHARTIAKEGILTALTEALQAGIDPD 257 (461)
T ss_pred hHHHHHHHHHhhHHHHHHHHHcccCccHHHHHHHHHHHHhcCCCceeeecchhhHHHHHHHHhhhHHHHHHHHHccCCcc
Confidence 999999999999999999877654 4567778899999999887754 3456678899999999876 688
Q ss_pred HHHHHHHHHHHhccCCCCchhhhhcCCcHHHHHHhhhcccch--HHHHHHHHHHHHhhCChhhhHHHhhccCcHHHHHHH
Q 017249 167 GRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDCKKYS--KFAEKATALLEILSSSEEGRIAITNSDGGILTLVET 244 (375)
Q Consensus 167 ~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~--~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~Lv~l 244 (375)
+...++.+|..|+..++.+..+.+.|++..|++++.+++... .+...++..|+.|+.+.+++..++ +.|+.+.++.+
T Consensus 258 ~L~~l~~tl~~lAVr~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralAG~DsvKs~IV-~~gg~~~ii~l 336 (461)
T KOG4199|consen 258 SLVSLSTTLKALAVRDEICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALAGSDSVKSTIV-EKGGLDKIITL 336 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHhCCCchHHHHH-HhcChHHHHHH
Confidence 899999999999999999999999999999999999865432 245678899999999999999999 68999999988
Q ss_pred hc--cCChHHHHHHHHHHHHhcccCcHHHHHHHHHcCChHHHHHHhhhC--CHHHHHHHHHHHHHhhcCChh--hhhhhh
Q 017249 245 VE--DGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEG--TFEAQERARTLLDLLRDTPQE--KRLSSS 318 (375)
Q Consensus 245 L~--~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~g~v~~L~~ll~~~--~~~~~~~A~~~L~~l~~~~~~--~~~~~g 318 (375)
+. ..+|.+.+.++.++.-+|-.. |+....+++.|+-...++.++.. ...+|++|+++++|+.-++++ +..-.-
T Consensus 337 ~~~h~~~p~Vi~~~~a~i~~l~LR~-pdhsa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~rs~~~~~~~l~~ 415 (461)
T KOG4199|consen 337 ALRHSDDPLVIQEVMAIISILCLRS-PDHSAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVRSAENRTILLAN 415 (461)
T ss_pred HHHcCCChHHHHHHHHHHHHHHhcC-cchHHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhhhhccchHHhc
Confidence 74 467889999999999999987 57788889999999889987743 478999999999999877744 333333
Q ss_pred hHHHHHHHHhhcCCChHHHHHHHHHHHHHH
Q 017249 319 VLEKIVYDIAARVDGADKAAETAKRLLQDM 348 (375)
Q Consensus 319 ~~~~l~~~l~~~~~g~~~~~~~a~~~l~~l 348 (375)
+++.|+..-. ... +.-..-|+.+|+.|
T Consensus 416 GiE~Li~~A~-~~h--~tce~~akaALRDL 442 (461)
T KOG4199|consen 416 GIEKLIRTAK-ANH--ETCEAAAKAALRDL 442 (461)
T ss_pred cHHHHHHHHH-hcC--ccHHHHHHHHHHhc
Confidence 4555654321 122 33344555566655
No 15
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=99.74 E-value=2.8e-16 Score=151.51 Aligned_cols=327 Identities=20% Similarity=0.180 Sum_probs=248.9
Q ss_pred hhhHHHHHhhHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCChh--hHHHHHhcCChHHHHHhhCC-CCHHHHHHHHH
Q 017249 14 QEEEAWNQRKQALIEELSDKLINGDLETKIEAARDIRKVVKKSSLK--TRSEFAAAGVVQPLVLMLVS-PNLDAIESSLL 90 (375)
Q Consensus 14 ~~~~~~~~~~~~~l~~Lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~--~~~~~~~~g~v~~Lv~~L~~-~~~~~~~~a~~ 90 (375)
+.+.+..+...++|+.||.+|.+.+.+++..|+.+|.||..+. .. ++-.+.+.++|+.++++|+. .|.++++....
T Consensus 264 d~~ik~~vrqlggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~-~~~~NKlai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg 342 (717)
T KOG1048|consen 264 DNKIKSRVRQLGGIPKLVALLDHRNDEVQRQACGALRNLVFGK-STDSNKLAIKELNGVPTLVRLLRHTQDDEVRELITG 342 (717)
T ss_pred hHHHHHHHHHhccHHHHHHHhcCCcHHHHHHHHHHHHhhhccc-CCcccchhhhhcCChHHHHHHHHhhcchHHHHHHHH
Confidence 4456668889999999999999999999999999999999988 44 78888999999999999986 78999999999
Q ss_pred HHHHhhccChhhHHHHHHcCChHHHHHhhcC--------C------ChHHHHHHHHHHHHhhcc-CCChhHHH-hcCChH
Q 017249 91 ALLNLAVRNERNKVKIATAGAIPPLVELLKF--------Q------NGTLRELAAAAILTLSAA-APNKPAIA-ASGAAP 154 (375)
Q Consensus 91 ~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~--------~------~~~~~~~a~~~L~~Ls~~-~~~~~~i~-~~~~l~ 154 (375)
+|+||+. ++..+..++.. .++.|..-+-. + ..++-.++..||.|++.. .+.+..+. ..|.|+
T Consensus 343 ~LWNLSS-~D~lK~~ii~~-al~tLt~~vI~P~Sgw~~~~~~~~~~~~~vf~n~tgcLRNlSs~~~eaR~~mr~c~GLId 420 (717)
T KOG1048|consen 343 ILWNLSS-NDALKMLIITS-ALSTLTDNVIIPHSGWEEEPAPRKAEDSTVFRNVTGCLRNLSSAGQEAREQMRECDGLID 420 (717)
T ss_pred HHhcccc-hhHHHHHHHHH-HHHHHHHhhcccccccCCCCcccccccceeeehhhhhhccccchhHHHHHHHhhccchHH
Confidence 9999998 45556555543 34444443311 1 245667999999999884 55788887 468999
Q ss_pred HHHHHhcc------CCHHHHHHHHHHHHHhccCCC--C------------------------------chh---------
Q 017249 155 LLVQILHS------GSVQGRVDAVTALHYLSTCKE--N------------------------------SSP--------- 187 (375)
Q Consensus 155 ~L~~lL~~------~~~~~~~~a~~~L~~L~~~~~--~------------------------------~~~--------- 187 (375)
.|+..+++ .+...++++...|.||+..-+ . +..
T Consensus 421 aL~~~iq~~i~~~~~d~K~VENcvCilRNLSYrl~~Evp~~~~~~~~~~~~~~~~~~~~~~~gcf~~k~~k~~~~~~~~~ 500 (717)
T KOG1048|consen 421 ALLFSIQTAIQKSDLDSKSVENCVCILRNLSYRLEAEVPPKYRQVLANIARLPGVGPPAESVGCFGFKKRKSDDNCDDLP 500 (717)
T ss_pred HHHHHHHHHHHhccccchhHHHHHHHHhhcCchhhhhcCHhhhhHhhcccccccCCCcccccccccchhhhchhcccccC
Confidence 99998863 356778999999999974311 0 000
Q ss_pred -------------hhhcCCcHHHHHHhhhcccchHHHHHHHHHHHHhhCC-----hhhhHHHhhccCcHHHHHHHhccCC
Q 017249 188 -------------ILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSS-----EEGRIAITNSDGGILTLVETVEDGS 249 (375)
Q Consensus 188 -------------i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~~-----~~~~~~~~~~~g~v~~Lv~lL~~~~ 249 (375)
+....++..-..++..+. ...+.+++.++|.||+.. ...+..++....+.+.|+.+|+.++
T Consensus 501 ~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~-n~~TlEasaGaLQNltA~~~~~~~~~~~~v~~kekgl~~l~~ll~~~~ 579 (717)
T KOG1048|consen 501 IPERATAPKGSEWLWHPSVVRPYLLLLALSK-NDNTLEASAGALQNLTAGLWTWSEYMRGAVFRKEKGLPPLVELLRNDD 579 (717)
T ss_pred CcccccCCCCceeeecHHHHHHHHHHHHHhc-chHHHHHhhhhHhhhhccCCcchhHHHhhhhhhccCccHHHHHHhcCC
Confidence 111123344344555333 456789999999999864 3345555456789999999999999
Q ss_pred hHHHHHHHHHHHHhcccCcHHHHHHHHHcCChHHHHHHhhhCC------HHHHHHHHHHHHHhhcCChh---hhhhhhhH
Q 017249 250 LVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGT------FEAQERARTLLDLLRDTPQE---KRLSSSVL 320 (375)
Q Consensus 250 ~~~~~~a~~~L~~l~~~~~~~~~~~l~~~g~v~~L~~ll~~~~------~~~~~~A~~~L~~l~~~~~~---~~~~~g~~ 320 (375)
+.+...++.+|.||+.+. ..++. +..++++.|++.+.+.. .++--.++.+|.++...+.. .+++.+.+
T Consensus 580 ~~vv~s~a~~LrNls~d~--rnk~l-igk~a~~~lv~~Lp~~~~~~~~sedtv~~vc~tl~niv~~~~~nAkdl~~~~g~ 656 (717)
T KOG1048|consen 580 SDVVRSAAGALRNLSRDI--RNKEL-IGKYAIPDLVRCLPGSGPSTSLSEDTVRAVCHTLNNIVRKNVLNAKDLLEIKGI 656 (717)
T ss_pred chHHHHHHHHHhhhccCc--hhhhh-hhcchHHHHHHhCcCCCCCcCchHHHHHHHHHhHHHHHHHhHHHHHHHHhccCh
Confidence 999999999999999886 44554 45889999999998543 56777788899999876633 68889999
Q ss_pred HHHHHHHhhcCCChHHHHHHHHHHHHHHH
Q 017249 321 EKIVYDIAARVDGADKAAETAKRLLQDMV 349 (375)
Q Consensus 321 ~~l~~~l~~~~~g~~~~~~~a~~~l~~l~ 349 (375)
+.|+.... ..-+++..+.|..+|..|-
T Consensus 657 ~kL~~I~~--s~~S~k~~kaAs~vL~~lW 683 (717)
T KOG1048|consen 657 PKLRLISK--SQHSPKEFKAASSVLDVLW 683 (717)
T ss_pred HHHHHHhc--ccCCHHHHHHHHHHHHHHH
Confidence 99986544 3556899999999998883
No 16
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=99.71 E-value=1.7e-15 Score=132.71 Aligned_cols=195 Identities=19% Similarity=0.219 Sum_probs=169.6
Q ss_pred hhHhHHHHHHHHhc-CCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhccCh
Q 017249 22 RKQALIEELSDKLI-NGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIESSLLALLNLAVRNE 100 (375)
Q Consensus 22 ~~~~~l~~Lv~~L~-s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~~~~~~~~~a~~~L~~L~~~~~ 100 (375)
-+.+.+++|+..|+ +.||..+..++.++.+.+..+ .+++.+.+.|+++.+..+|.++++.+++.|+++|.|++. +.
T Consensus 9 l~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aaf~--~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~-~~ 85 (254)
T PF04826_consen 9 LEAQELQKLLCLLESTEDPFIQEKALIALGNSAAFP--FNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSV-ND 85 (254)
T ss_pred cCHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccCh--hHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCC-Ch
Confidence 45677899999998 679999999999999998877 999999999999999999999999999999999999998 57
Q ss_pred hhHHHHHHcCChHHHHHhhcCC--ChHHHHHHHHHHHHhhccCCChhHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHh
Q 017249 101 RNKVKIATAGAIPPLVELLKFQ--NGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYL 178 (375)
Q Consensus 101 ~~r~~i~~~g~i~~Lv~lL~~~--~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~~L 178 (375)
+++..+-. .++.+++...+. +.+++..++.+|.||+..++.+..+. +.++.++.+|.+++..++..++.+|.||
T Consensus 86 en~~~Ik~--~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~--~~i~~ll~LL~~G~~~~k~~vLk~L~nL 161 (254)
T PF04826_consen 86 ENQEQIKM--YIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLA--NYIPDLLSLLSSGSEKTKVQVLKVLVNL 161 (254)
T ss_pred hhHHHHHH--HHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHH--hhHHHHHHHHHcCChHHHHHHHHHHHHh
Confidence 78777644 477777755443 77899999999999998887777764 4799999999999999999999999999
Q ss_pred ccCCCCchhhhhcCCcHHHHHHhhhcccchHHHHHHHHHHHHhhCC
Q 017249 179 STCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSS 224 (375)
Q Consensus 179 ~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~~ 224 (375)
+.++.....++..+++..++.++..+.. ..+...++.++.|+..+
T Consensus 162 S~np~~~~~Ll~~q~~~~~~~Lf~~~~~-~~~l~~~l~~~~ni~~~ 206 (254)
T PF04826_consen 162 SENPDMTRELLSAQVLSSFLSLFNSSES-KENLLRVLTFFENINEN 206 (254)
T ss_pred ccCHHHHHHHHhccchhHHHHHHccCCc-cHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999988653 34566688888899754
No 17
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=99.70 E-value=1.4e-15 Score=152.82 Aligned_cols=335 Identities=19% Similarity=0.197 Sum_probs=255.0
Q ss_pred chhhhHHHHHhhHhHHHHHHHHhcC---CCHHHHHHHHHHHHHHHhhCChhhHHH--HHhcCChHHHH-------HhhCC
Q 017249 12 TDQEEEAWNQRKQALIEELSDKLIN---GDLETKIEAARDIRKVVKKSSLKTRSE--FAAAGVVQPLV-------LMLVS 79 (375)
Q Consensus 12 ~~~~~~~~~~~~~~~l~~Lv~~L~s---~~~~~~~~a~~~l~~l~~~~~~~~~~~--~~~~g~v~~Lv-------~~L~~ 79 (375)
+-..+.+..++..+-++.|+..|.- ++.+.+..|-.+|.|+....+++.+.+ +.-..+++.++ .+|..
T Consensus 222 Sss~esCaamR~SgCLpLLvQilH~~d~~~kear~~A~aALHNIVhSqPD~kr~RRE~kvL~lLeQIraYC~~~~~~lqa 301 (2195)
T KOG2122|consen 222 SSSPESCAAMRRSGCLPLLVQILHGPDDEDKEARKRASAALHNIVHSQPDEKRGRREKKVLHLLEQIRAYCETCWTWLQA 301 (2195)
T ss_pred ccCchhhHHHHhccchHHHHHHhhCCchhhHHHHHHHHHHHHHHhhcCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4456778889999999999999983 356788899999999998884444332 11122333222 22322
Q ss_pred C-------CHHHHH-HHHHHHHHhhccChhhHHHHHHcCChHHHHHhhcC---------C---ChHHHHHHHHHHHHhhc
Q 017249 80 P-------NLDAIE-SSLLALLNLAVRNERNKVKIATAGAIPPLVELLKF---------Q---NGTLRELAAAAILTLSA 139 (375)
Q Consensus 80 ~-------~~~~~~-~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~---------~---~~~~~~~a~~~L~~Ls~ 139 (375)
. ..+-+. .|+.+|..++. ++++|..|.+.|++.++-.++.- + .-.+|.++..+|.||..
T Consensus 302 r~~~~apa~~~H~lcaA~~~lMK~SF-DEEhR~aM~ELG~LqAIaeLl~vDh~mhgp~tnd~~~~aLRrYa~MALTNLTF 380 (2195)
T KOG2122|consen 302 RGPAIAPASDEHQLCAALCTLMKLSF-DEEHRHAMNELGGLQAIAELLQVDHEMHGPETNDGECNALRRYAGMALTNLTF 380 (2195)
T ss_pred cCCCCCCcccchhhHHHHHHHHHhhc-cHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhcccc
Confidence 1 112233 78889999998 68999999999999999887731 1 24679999999999998
Q ss_pred cCC-ChhHH-HhcCChHHHHHHhccCCHHHHHHHHHHHHHhccC-CCCchhhh-hcCCcHHHHHHhhhcccchHHHHHHH
Q 017249 140 AAP-NKPAI-AASGAAPLLVQILHSGSVQGRVDAVTALHYLSTC-KENSSPIL-DATAVPPLINLLKDCKKYSKFAEKAT 215 (375)
Q Consensus 140 ~~~-~~~~i-~~~~~l~~L~~lL~~~~~~~~~~a~~~L~~L~~~-~~~~~~i~-~~g~i~~Lv~ll~~~~~~~~~~~~a~ 215 (375)
.+. ||..+ ...|++..++..|.+...++..-.+.+|.||+.. +.+...++ +.|.+..|+....... .+......+
T Consensus 381 GDv~NKa~LCs~rgfMeavVAQL~s~peeL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~~al~~~-kEsTLKavL 459 (2195)
T KOG2122|consen 381 GDVANKATLCSQRGFMEAVVAQLISAPEELLQVYASVLRNLSWRADSNMKKVLRETGSVTALAACALRNK-KESTLKAVL 459 (2195)
T ss_pred ccccchhhhhhhhhHHHHHHHHHhcChHHHHHHHHHHHHhccccccccHHHHHHhhhhHHHHHHHHHHhc-ccchHHHHH
Confidence 876 56555 4679999999999999889988899999999965 55655554 5788888887665543 224557789
Q ss_pred HHHHHhhC-ChhhhHHHhhccCcHHHHHHHhccC----ChHHHHHHHHHHHHhcccC--cHHHHHHHHHcCChHHHHHHh
Q 017249 216 ALLEILSS-SEEGRIAITNSDGGILTLVETVEDG----SLVSTQHAVGALLSLCQSC--RDKYRQLILKEGAIPGLLRLT 288 (375)
Q Consensus 216 ~~L~~l~~-~~~~~~~~~~~~g~v~~Lv~lL~~~----~~~~~~~a~~~L~~l~~~~--~~~~~~~l~~~g~v~~L~~ll 288 (375)
.+||||+. +.+|+..|..-.|++..|+.+|... .-.+.+.|-++|.|++..- .+.+++.+.+.+.+..|++.|
T Consensus 460 SALWNLSAHcteNKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQILR~~NCLq~LLQ~L 539 (2195)
T KOG2122|consen 460 SALWNLSAHCTENKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQILRRHNCLQTLLQHL 539 (2195)
T ss_pred HHHhhhhhcccccchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccchHHHHHHHhhHHHHHHHHh
Confidence 99999997 5888888888889999999999643 3567888999999886642 146788899999999999999
Q ss_pred hhCCHHHHHHHHHHHHHhhcCCh---hhhhhhhhHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHH
Q 017249 289 VEGTFEAQERARTLLDLLRDTPQ---EKRLSSSVLEKIVYDIAARVDGADKAAETAKRLLQDMVQR 351 (375)
Q Consensus 289 ~~~~~~~~~~A~~~L~~l~~~~~---~~~~~~g~~~~l~~~l~~~~~g~~~~~~~a~~~l~~l~~~ 351 (375)
++.+-.+.-+++.+|+||+-..+ +.+...|+++.|..++.+ ...-..+.+.++|+||+.+
T Consensus 540 KS~SLTiVSNaCGTLWNLSAR~p~DQq~LwD~gAv~mLrnLIhS---KhkMIa~GSaaALrNLln~ 602 (2195)
T KOG2122|consen 540 KSHSLTIVSNACGTLWNLSARSPEDQQMLWDDGAVPMLRNLIHS---KHKMIAMGSAAALRNLLNF 602 (2195)
T ss_pred hhcceEEeecchhhhhhhhcCCHHHHHHHHhcccHHHHHHHHhh---hhhhhhhhHHHHHHHHhcC
Confidence 99999999999999999986653 357789999988777752 3355566777778887644
No 18
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=99.68 E-value=4.1e-14 Score=127.41 Aligned_cols=308 Identities=15% Similarity=0.114 Sum_probs=237.0
Q ss_pred hhHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCC----C---CHHHHHHHHHHHHH
Q 017249 22 RKQALIEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVS----P---NLDAIESSLLALLN 94 (375)
Q Consensus 22 ~~~~~l~~Lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~----~---~~~~~~~a~~~L~~ 94 (375)
.+.+++..|.....|++.++-.+..++|.|+|.++ .++|..+.+.||-..++..|+. + +.+...-+...|.|
T Consensus 84 I~a~~le~Lrq~psS~d~ev~~Q~~RaLgNiCydn-~E~R~a~~~lgGaqivid~L~~~cs~d~~ane~~~~v~~g~l~N 162 (604)
T KOG4500|consen 84 IDAEALELLRQTPSSPDTEVHEQCFRALGNICYDN-NENRAAFFNLGGAQIVIDVLKPYCSKDNPANEEYSAVAFGVLHN 162 (604)
T ss_pred hHHHHHHHHHhCCCCCcccHHHHHHHHHhhhhccC-chhHHHHHhcCCceehHhhhccccccCCccHHHHHHHHHHHHHH
Confidence 34567777777778889999999999999999999 9999999999997777666643 2 24677788889999
Q ss_pred hhccChhhHHHHHHcCChHHHHHhhcCC--ChHHHHHHHHHHHHhhcc-CCC-hhHHHhcCChHHHHHHhccC-CHHHHH
Q 017249 95 LAVRNERNKVKIATAGAIPPLVELLKFQ--NGTLRELAAAAILTLSAA-APN-KPAIAASGAAPLLVQILHSG-SVQGRV 169 (375)
Q Consensus 95 L~~~~~~~r~~i~~~g~i~~Lv~lL~~~--~~~~~~~a~~~L~~Ls~~-~~~-~~~i~~~~~l~~L~~lL~~~-~~~~~~ 169 (375)
..-++...+.++.+.|+++.|...+.-+ +....+.......||..- .++ .+...+....-.+++++.+. ++...+
T Consensus 163 y~l~~~~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~~e~~~~~~~d~sl~~~l~~ll~~~v~~d~~e 242 (604)
T KOG4500|consen 163 YILDSRELRAQVADAGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSFVCEMLYPFCKDCSLVFMLLQLLPSMVREDIDE 242 (604)
T ss_pred hhCCcHHHHHHHHhcccHHHHHHHhhcccccHHHHHHHHhccccHHHHHHHhhhhhhccchHHHHHHHHHHHhhccchhh
Confidence 9999999999999999999999987543 666666666666665432 232 33444556666777777655 566777
Q ss_pred HHHHHHHHhccCCCCchhhhhcCCcHHHHHHhhhcccch------HHHHHHHHHHHHhhCChhhhHHHhhccCcHHHHHH
Q 017249 170 DAVTALHYLSTCKENSSPILDATAVPPLINLLKDCKKYS------KFAEKATALLEILSSSEEGRIAITNSDGGILTLVE 243 (375)
Q Consensus 170 ~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~------~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~Lv~ 243 (375)
-....|...+.++..+..+.+.|.+..++++++...... .....++....-+....+.-..+......++.++.
T Consensus 243 M~feila~~aend~Vkl~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~el~vllltGDeSMq~L~~~p~~l~~~~s 322 (604)
T KOG4500|consen 243 MIFEILAKAAENDLVKLSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKRIAELDVLLLTGDESMQKLHADPQFLDFLES 322 (604)
T ss_pred HHHHHHHHHhcCcceeeehhhcchHHHHHHHHHhcccccchHHHHHHHHhhhhHhhhhhcCchHHHHHhcCcHHHHHHHH
Confidence 888899999999999999999999999999998732111 12223334344444445555555533347889999
Q ss_pred HhccCChHHHHHHHHHHHHhcccCcHHHHHHHHHcCChHHHHHHhh-----hCCHHHHHHHHHHHHHhhcCChh--hhhh
Q 017249 244 TVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTV-----EGTFEAQERARTLLDLLRDTPQE--KRLS 316 (375)
Q Consensus 244 lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~g~v~~L~~ll~-----~~~~~~~~~A~~~L~~l~~~~~~--~~~~ 316 (375)
.+.+.+......+.-+|+|++..+ ..+..+++.|.+..|++++. +++-+.|..+..+|+|+.-..++ .+..
T Consensus 323 w~~S~d~~l~t~g~LaigNfaR~D--~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~IPv~nka~~~~ 400 (604)
T KOG4500|consen 323 WFRSDDSNLITMGSLAIGNFARRD--DICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMIPVSNKAHFAP 400 (604)
T ss_pred HhcCCchhHHHHHHHHHHhhhccc--hHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhccccCCchhhccc
Confidence 999989889999999999999987 56888999999999999775 36788889999999999876644 6889
Q ss_pred hhhHHHHHHHHhhcCC
Q 017249 317 SSVLEKIVYDIAARVD 332 (375)
Q Consensus 317 ~g~~~~l~~~l~~~~~ 332 (375)
.|+.++++..+..+..
T Consensus 401 aGvteaIL~~lk~~~p 416 (604)
T KOG4500|consen 401 AGVTEAILLQLKLASP 416 (604)
T ss_pred cchHHHHHHHHHhcCC
Confidence 9999999988875543
No 19
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.67 E-value=1.4e-13 Score=133.80 Aligned_cols=320 Identities=17% Similarity=0.189 Sum_probs=247.3
Q ss_pred hHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhccChhh
Q 017249 23 KQALIEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIESSLLALLNLAVRNERN 102 (375)
Q Consensus 23 ~~~~l~~Lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~~~~~~~~~a~~~L~~L~~~~~~~ 102 (375)
..+..+.|...|.++++.++..+++.|.++..++ +.....+.+.+.++.++.+|.+++..+...|+.+|.+++. .+..
T Consensus 75 ~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~-~~~~~~~~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~-~~~~ 152 (503)
T PF10508_consen 75 LPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHS-EGAAQLLVDNELLPLIIQCLRDPDLSVAKAAIKALKKLAS-HPEG 152 (503)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCC-HHHHHHhcCccHHHHHHHHHcCCcHHHHHHHHHHHHHHhC-Cchh
Confidence 4566778888888999999999999999999888 6667777788999999999999999999999999999998 4556
Q ss_pred HHHHHHcCChHHHHHhhcCCChHHHHHHHHHHHHhhccCC-ChhHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccC
Q 017249 103 KVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAP-NKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTC 181 (375)
Q Consensus 103 r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~-~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~~L~~~ 181 (375)
...++..+.++.|..++...++.+|..+..++.+++...+ ....+...|.++.++..+++.|.-++.+++.+|..|+..
T Consensus 153 ~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~~ 232 (503)
T PF10508_consen 153 LEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAET 232 (503)
T ss_pred HHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHcC
Confidence 6678888889999999988888999999999999987654 566667889999999999998899999999999999998
Q ss_pred CCCchhhhhcCCcHHHHHHhhhcccch---H-HHHHHHHHHHHhhCC-hhhhHHHhhccCcHHHHHHHhccCChHHHHHH
Q 017249 182 KENSSPILDATAVPPLINLLKDCKKYS---K-FAEKATALLEILSSS-EEGRIAITNSDGGILTLVETVEDGSLVSTQHA 256 (375)
Q Consensus 182 ~~~~~~i~~~g~i~~Lv~ll~~~~~~~---~-~~~~a~~~L~~l~~~-~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~a 256 (375)
+.+...+.+.|+++.|.+++.+...++ . +.-......++++.. +...... ...++..|..++.+.++..+..|
T Consensus 233 ~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~~~~~v~~~--~p~~~~~l~~~~~s~d~~~~~~A 310 (503)
T PF10508_consen 233 PHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARVSPQEVLEL--YPAFLERLFSMLESQDPTIREVA 310 (503)
T ss_pred hhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhcChHHHHHH--HHHHHHHHHHHhCCCChhHHHHH
Confidence 888999999999999999998764443 1 222234566777764 3322222 24566777888888999999999
Q ss_pred HHHHHHhcccCcHHHHHHH-HHc-CChHHHHH----HhhhCCHHHHHHHHHHHHHhhcCChh----hh----------hh
Q 017249 257 VGALLSLCQSCRDKYRQLI-LKE-GAIPGLLR----LTVEGTFEAQERARTLLDLLRDTPQE----KR----------LS 316 (375)
Q Consensus 257 ~~~L~~l~~~~~~~~~~~l-~~~-g~v~~L~~----ll~~~~~~~~~~A~~~L~~l~~~~~~----~~----------~~ 316 (375)
+.+++.++... +++..+ ... +.++.++. ...++..++|..+..+|.++-...+. .+ ..
T Consensus 311 ~dtlg~igst~--~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~al~~il~~~~~~~~~~i~~~~~~w~~~~~ 388 (503)
T PF10508_consen 311 FDTLGQIGSTV--EGKQLLLQKQGPAMKHVLKAIGDAIKSGSTELKLRALHALASILTSGTDRQDNDILSITESWYESLS 388 (503)
T ss_pred HHHHHHHhCCH--HHHHHHHhhcchHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhc
Confidence 99999999764 667777 443 35555544 44467789999999999999433311 11 11
Q ss_pred hhhHH-HHHHHHhhcCCChHHHHHHHHHHHHHHHHH
Q 017249 317 SSVLE-KIVYDIAARVDGADKAAETAKRLLQDMVQR 351 (375)
Q Consensus 317 ~g~~~-~l~~~l~~~~~g~~~~~~~a~~~l~~l~~~ 351 (375)
.+-.. -++..+ ...-++.+-.+-++|+.+..+
T Consensus 389 ~~~~~~~l~~~~---~qPF~elr~a~~~~l~~l~~~ 421 (503)
T PF10508_consen 389 GSPLSNLLMSLL---KQPFPELRCAAYRLLQALAAQ 421 (503)
T ss_pred CCchHHHHHHHh---cCCchHHHHHHHHHHHHHhcC
Confidence 11222 233323 455688888888888887654
No 20
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.66 E-value=1.9e-13 Score=132.79 Aligned_cols=317 Identities=14% Similarity=0.107 Sum_probs=247.7
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhccChhhHHHHH
Q 017249 28 EELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIESSLLALLNLAVRNERNKVKIA 107 (375)
Q Consensus 28 ~~Lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~~~~~~~~~a~~~L~~L~~~~~~~r~~i~ 107 (375)
+.++..|++.+.+....++.+|..+.... ..... ..+..+.|...|.++++.++..+++.|.++..++......+.
T Consensus 41 ~~lf~~L~~~~~e~v~~~~~iL~~~l~~~--~~~~l--~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~ 116 (503)
T PF10508_consen 41 PVLFDCLNTSNREQVELICDILKRLLSAL--SPDSL--LPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLV 116 (503)
T ss_pred HHHHHHHhhcChHHHHHHHHHHHHHHhcc--CHHHH--HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhc
Confidence 34778888888888888889999988766 33332 456788999999999999999999999999987776677777
Q ss_pred HcCChHHHHHhhcCCChHHHHHHHHHHHHhhccCCChhHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccC-CCCch
Q 017249 108 TAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTC-KENSS 186 (375)
Q Consensus 108 ~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~~L~~~-~~~~~ 186 (375)
+.+.++.++.++.+++..+...|+.+|.+++.++.....+...+.++.|..++..++..++..+..++.+++.. ++...
T Consensus 117 ~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~ 196 (503)
T PF10508_consen 117 DNELLPLIIQCLRDPDLSVAKAAIKALKKLASHPEGLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAE 196 (503)
T ss_pred CccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchhHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHH
Confidence 89999999999999999999999999999999887777777888899999999988888899999999999865 45666
Q ss_pred hhhhcCCcHHHHHHhhhcccchHHHHHHHHHHHHhhCChhhhHHHhhccCcHHHHHHHhccCC--h----HHHHHHHHHH
Q 017249 187 PILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGS--L----VSTQHAVGAL 260 (375)
Q Consensus 187 ~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~--~----~~~~~a~~~L 260 (375)
.+.+.|.++.+++.+.++ +.-++.+++.+|..|+..+.+...+. ..|+++.|..++.+.+ + ..--..+...
T Consensus 197 ~~~~sgll~~ll~eL~~d--DiLvqlnalell~~La~~~~g~~yL~-~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~ 273 (503)
T PF10508_consen 197 AVVNSGLLDLLLKELDSD--DILVQLNALELLSELAETPHGLQYLE-QQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFF 273 (503)
T ss_pred HHHhccHHHHHHHHhcCc--cHHHHHHHHHHHHHHHcChhHHHHHH-hCCHHHHHHHHHhccccCCcccchhhhhHHHHH
Confidence 777789999999999884 55788999999999999999999998 5899999999996432 2 1222334556
Q ss_pred HHhcccCcHHHHHHHHHcCChHHHHHHhhhCCHHHHHHHHHHHHHhhcCChh-hhh--h-hhhHHHHHHHHhhc-CCChH
Q 017249 261 LSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDTPQE-KRL--S-SSVLEKIVYDIAAR-VDGAD 335 (375)
Q Consensus 261 ~~l~~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~~-~~~--~-~g~~~~l~~~l~~~-~~g~~ 335 (375)
++++...+..... .-..++..|.+++.+.|+..+..|..++..++..... ..+ . .+.++..+...... ..|+.
T Consensus 274 g~la~~~~~~v~~--~~p~~~~~l~~~~~s~d~~~~~~A~dtlg~igst~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~ 351 (503)
T PF10508_consen 274 GNLARVSPQEVLE--LYPAFLERLFSMLESQDPTIREVAFDTLGQIGSTVEGKQLLLQKQGPAMKHVLKAIGDAIKSGST 351 (503)
T ss_pred HHHHhcChHHHHH--HHHHHHHHHHHHhCCCChhHHHHHHHHHHHHhCCHHHHHHHHhhcchHHHHHHHHHHHHhcCCch
Confidence 6676654222211 1145667777888899999999999999999977754 222 2 22444444443322 45667
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 017249 336 KAAETAKRLLQDMVQRSM 353 (375)
Q Consensus 336 ~~~~~a~~~l~~l~~~s~ 353 (375)
..+-++-.++..+.....
T Consensus 352 ~lk~r~l~al~~il~~~~ 369 (503)
T PF10508_consen 352 ELKLRALHALASILTSGT 369 (503)
T ss_pred HHHHHHHHHHHHHHhcCC
Confidence 888899999999964433
No 21
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.64 E-value=2.7e-13 Score=123.70 Aligned_cols=307 Identities=14% Similarity=0.159 Sum_probs=243.1
Q ss_pred hhhhHHHHHhhHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHH
Q 017249 13 DQEEEAWNQRKQALIEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIESSLLAL 92 (375)
Q Consensus 13 ~~~~~~~~~~~~~~l~~Lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~~~~~~~~~a~~~L 92 (375)
.|......++....+..||+.|..++.+........|.+++... +++..|.+.|.|..|+++.-.++++++...+..|
T Consensus 292 ed~~~ElKMrrkniV~mLVKaLdr~n~~Ll~lv~~FLkKLSIf~--eNK~~M~~~~iveKL~klfp~~h~dL~~~tl~Ll 369 (791)
T KOG1222|consen 292 EDISVELKMRRKNIVAMLVKALDRSNSSLLTLVIKFLKKLSIFD--ENKIVMEQNGIVEKLLKLFPIQHPDLRKATLMLL 369 (791)
T ss_pred hhhhHHHHHHHHhHHHHHHHHHcccchHHHHHHHHHHHHhhhhc--cchHHHHhccHHHHHHHhcCCCCHHHHHHHHHHh
Confidence 44555667788899999999999989998889999999999998 8999999999999999999999999999999999
Q ss_pred HHhhccChhhHHHHHHcCChHHHHHhhcCCChHHHHHHHHHHHHhhccCCChhHHHhcCChHHHHHHhccC-CHHHHHHH
Q 017249 93 LNLAVRNERNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHSG-SVQGRVDA 171 (375)
Q Consensus 93 ~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~l~~L~~lL~~~-~~~~~~~a 171 (375)
.|++.+ ...|..++..|.+|.|..++.+.. -+..|+..+..++-+++.+..+.-..+++.+.+.+-++ +.++-...
T Consensus 370 fNlSFD-~glr~KMv~~GllP~l~~ll~~d~--~~~iA~~~lYh~S~dD~~K~MfayTdci~~lmk~v~~~~~~~vdl~l 446 (791)
T KOG1222|consen 370 FNLSFD-SGLRPKMVNGGLLPHLASLLDSDT--KHGIALNMLYHLSCDDDAKAMFAYTDCIKLLMKDVLSGTGSEVDLAL 446 (791)
T ss_pred hhcccc-ccccHHHhhccchHHHHHHhCCcc--cchhhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHHhcCCceecHHH
Confidence 999994 679999999999999999997653 34568888999999999999999899999999987655 45666666
Q ss_pred HHHHHHhccCCCCchhhhhcCCcHHHHHHhhhcccchHHHHHHHHHHHHhhCChhh-hHHHhhccCcHHHHHHHhcc-CC
Q 017249 172 VTALHYLSTCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEG-RIAITNSDGGILTLVETVED-GS 249 (375)
Q Consensus 172 ~~~L~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~~~~~-~~~~~~~~g~v~~Lv~lL~~-~~ 249 (375)
+....|||.+..|.+.+++-.++..|++..-... +. + ...+++|++.++.. +..++ ..|..|...+.. .+
T Consensus 447 ia~ciNl~lnkRNaQlvceGqgL~~LM~ra~k~~-D~-l---LmK~vRniSqHeg~tqn~Fi---dyvgdLa~i~~nd~~ 518 (791)
T KOG1222|consen 447 IALCINLCLNKRNAQLVCEGQGLDLLMERAIKSR-DL-L---LMKVVRNISQHEGATQNMFI---DYVGDLAGIAKNDNS 518 (791)
T ss_pred HHHHHHHHhccccceEEecCcchHHHHHHHhccc-ch-H---HHHHHHHhhhccchHHHHHH---HHHHHHHHHhhcCch
Confidence 6667799998888888888888888887665543 21 2 45788899988764 44444 467778877764 45
Q ss_pred hHHHHHHHHHHHHhcccCcHHHHHHHHHcCChHHHHHHhhhC--CHHHHHHHHHHHHHhhcCChh--hhhhhhhHHHHHH
Q 017249 250 LVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEG--TFEAQERARTLLDLLRDTPQE--KRLSSSVLEKIVY 325 (375)
Q Consensus 250 ~~~~~~a~~~L~~l~~~~~~~~~~~l~~~g~v~~L~~ll~~~--~~~~~~~A~~~L~~l~~~~~~--~~~~~g~~~~l~~ 325 (375)
+...-+++++++|+.-.+- +-...+.+...||.+.+.+..+ ..+.+-..+-.+..+++.... .....++++.++.
T Consensus 519 E~F~~EClGtlanL~v~dl-dw~~ilq~~~LvPw~k~~L~pga~eddLvL~~vi~~GT~a~d~~cA~Lla~a~~i~tlie 597 (791)
T KOG1222|consen 519 ESFGLECLGTLANLKVTDL-DWAKILQSENLVPWMKTQLQPGADEDDLVLQIVIACGTMARDLDCARLLAPAKLIDTLIE 597 (791)
T ss_pred HHHHHHHHHHHhhcccCCC-CHHHHHhhccccHHHHHhhcCCccchhhhhHHHHHhhhhhhhhHHHHHhCccccHHHHHH
Confidence 6677899999999987653 3355566689999999988744 245555666666666665533 3445789999999
Q ss_pred HHhhcCCC
Q 017249 326 DIAARVDG 333 (375)
Q Consensus 326 ~l~~~~~g 333 (375)
+|.+....
T Consensus 598 LL~a~QeD 605 (791)
T KOG1222|consen 598 LLQACQED 605 (791)
T ss_pred HHHhhccc
Confidence 88765544
No 22
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=99.63 E-value=1.1e-14 Score=127.74 Aligned_cols=198 Identities=20% Similarity=0.200 Sum_probs=172.6
Q ss_pred HHHcCChHHHHHhhcCC-ChHHHHHHHHHHHHhhccCCChhHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCCCC
Q 017249 106 IATAGAIPPLVELLKFQ-NGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTCKEN 184 (375)
Q Consensus 106 i~~~g~i~~Lv~lL~~~-~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~~L~~~~~~ 184 (375)
+.+.+-++.|+.+|+.. +|.+++.+..++.+.+..+.++..+.+.|+++.+..+|.++++.++..|+++|.|++...++
T Consensus 8 ~l~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en 87 (254)
T PF04826_consen 8 ILEAQELQKLLCLLESTEDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDEN 87 (254)
T ss_pred CcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhh
Confidence 35667789999999865 89999999999999999999999999999999999999999999999999999999999888
Q ss_pred chhhhhcCCcHHHHHHhhhcccchHHHHHHHHHHHHhhCChhhhHHHhhccCcHHHHHHHhccCChHHHHHHHHHHHHhc
Q 017249 185 SSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLC 264 (375)
Q Consensus 185 ~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~ 264 (375)
...+-. .++.+.+...+..-+..++..++++|.||+..++.+..+. +.++.++++|..++..++..++++|.||+
T Consensus 88 ~~~Ik~--~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~---~~i~~ll~LL~~G~~~~k~~vLk~L~nLS 162 (254)
T PF04826_consen 88 QEQIKM--YIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLA---NYIPDLLSLLSSGSEKTKVQVLKVLVNLS 162 (254)
T ss_pred HHHHHH--HHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHH---hhHHHHHHHHHcCChHHHHHHHHHHHHhc
Confidence 887754 5777777665554455788899999999998888777665 47999999999999999999999999999
Q ss_pred ccCcHHHHHHHHHcCChHHHHHHhhhC-CHHHHHHHHHHHHHhhcCC
Q 017249 265 QSCRDKYRQLILKEGAIPGLLRLTVEG-TFEAQERARTLLDLLRDTP 310 (375)
Q Consensus 265 ~~~~~~~~~~l~~~g~v~~L~~ll~~~-~~~~~~~A~~~L~~l~~~~ 310 (375)
... .....++..++++.++.++... +.++-..+..+..++.++-
T Consensus 163 ~np--~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~ 207 (254)
T PF04826_consen 163 ENP--DMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINENI 207 (254)
T ss_pred cCH--HHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHhh
Confidence 875 6778888999999999999865 6788899999999997665
No 23
>PRK09687 putative lyase; Provisional
Probab=99.57 E-value=7.3e-13 Score=118.75 Aligned_cols=265 Identities=18% Similarity=0.083 Sum_probs=201.3
Q ss_pred hHHHHHhhHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHh
Q 017249 16 EEAWNQRKQALIEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIESSLLALLNL 95 (375)
Q Consensus 16 ~~~~~~~~~~~l~~Lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~~~~~~~~~a~~~L~~L 95 (375)
-.....++.-.++.|+..|.+.+..++..|++.|..+-... +++.+..++.++++.++..++++|+.|
T Consensus 14 ~~~~~~~~~~~~~~L~~~L~d~d~~vR~~A~~aL~~~~~~~------------~~~~l~~ll~~~d~~vR~~A~~aLg~l 81 (280)
T PRK09687 14 YSLYSQCKKLNDDELFRLLDDHNSLKRISSIRVLQLRGGQD------------VFRLAIELCSSKNPIERDIGADILSQL 81 (280)
T ss_pred HHHHHHHhhccHHHHHHHHhCCCHHHHHHHHHHHHhcCcch------------HHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence 33445556667899999999999999999999998764322 467788889999999999999999998
Q ss_pred hccChhhHHHHHHcCChHHHHHh-hcCCChHHHHHHHHHHHHhhccCCChhHHHhcCChHHHHHHhccCCHHHHHHHHHH
Q 017249 96 AVRNERNKVKIATAGAIPPLVEL-LKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHSGSVQGRVDAVTA 174 (375)
Q Consensus 96 ~~~~~~~r~~i~~~g~i~~Lv~l-L~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~ 174 (375)
-... .. ....++.|..+ ++++++.++..|+.+|.++....... ....++.+...+.+.+..++..++++
T Consensus 82 g~~~-~~-----~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~----~~~a~~~l~~~~~D~~~~VR~~a~~a 151 (280)
T PRK09687 82 GMAK-RC-----QDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLY----SPKIVEQSQITAFDKSTNVRFAVAFA 151 (280)
T ss_pred CCCc-cc-----hHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccccccc----chHHHHHHHHHhhCCCHHHHHHHHHH
Confidence 6522 11 12346777776 67779999999999999985432211 12345667788888999999999999
Q ss_pred HHHhccCCCCchhhhhcCCcHHHHHHhhhcccchHHHHHHHHHHHHhhCChhhhHHHhhccCcHHHHHHHhccCChHHHH
Q 017249 175 LHYLSTCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQ 254 (375)
Q Consensus 175 L~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~ 254 (375)
|..+. ....++.|+.++.+. +..++..|..+|+.+... ....++.|+..|.+.+..++.
T Consensus 152 Lg~~~----------~~~ai~~L~~~L~d~--~~~VR~~A~~aLg~~~~~---------~~~~~~~L~~~L~D~~~~VR~ 210 (280)
T PRK09687 152 LSVIN----------DEAAIPLLINLLKDP--NGDVRNWAAFALNSNKYD---------NPDIREAFVAMLQDKNEEIRI 210 (280)
T ss_pred HhccC----------CHHHHHHHHHHhcCC--CHHHHHHHHHHHhcCCCC---------CHHHHHHHHHHhcCCChHHHH
Confidence 97552 334788999999876 446888899999887321 235777899999999999999
Q ss_pred HHHHHHHHhcccCcHHHHHHHHHcCChHHHHHHhhhCCHHHHHHHHHHHHHhhcCChhhhhhhhhHHHHHHHHhhcCCCh
Q 017249 255 HAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDTPQEKRLSSSVLEKIVYDIAARVDGA 334 (375)
Q Consensus 255 ~a~~~L~~l~~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~~~~~~~g~~~~l~~~l~~~~~g~ 334 (375)
.|++.|..+-. ..+++.|+..+.+++ ++..|+.+|..+.... +++.|...+. .+.+
T Consensus 211 ~A~~aLg~~~~------------~~av~~Li~~L~~~~--~~~~a~~ALg~ig~~~--------a~p~L~~l~~--~~~d 266 (280)
T PRK09687 211 EAIIGLALRKD------------KRVLSVLIKELKKGT--VGDLIIEAAGELGDKT--------LLPVLDTLLY--KFDD 266 (280)
T ss_pred HHHHHHHccCC------------hhHHHHHHHHHcCCc--hHHHHHHHHHhcCCHh--------HHHHHHHHHh--hCCC
Confidence 99999988521 257889999988766 5678888888888754 7888877665 3445
Q ss_pred HHHHHHHHHHHHH
Q 017249 335 DKAAETAKRLLQD 347 (375)
Q Consensus 335 ~~~~~~a~~~l~~ 347 (375)
++.+.+|.+.|+.
T Consensus 267 ~~v~~~a~~a~~~ 279 (280)
T PRK09687 267 NEIITKAIDKLKR 279 (280)
T ss_pred hhHHHHHHHHHhc
Confidence 7888898888764
No 24
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=99.52 E-value=2.7e-12 Score=115.88 Aligned_cols=307 Identities=14% Similarity=0.111 Sum_probs=231.7
Q ss_pred CCHHHHHHHHHHHHHHHhhCChhhHHHHH----hcCChHHHHHhhCCCCHHHHHHHHHHHHHhhccChhhHHHHHHcCCh
Q 017249 37 GDLETKIEAARDIRKVVKKSSLKTRSEFA----AAGVVQPLVLMLVSPNLDAIESSLLALLNLAVRNERNKVKIATAGAI 112 (375)
Q Consensus 37 ~~~~~~~~a~~~l~~l~~~~~~~~~~~~~----~~g~v~~Lv~~L~~~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i 112 (375)
.+..+...+..++...+..+ ..|..|. +.++++.|.+..++++.++.++.+++|+|+|.++.++|..+.+.||-
T Consensus 54 ~~~tv~~~qssC~A~~sk~e--v~r~~F~~~~I~a~~le~Lrq~psS~d~ev~~Q~~RaLgNiCydn~E~R~a~~~lgGa 131 (604)
T KOG4500|consen 54 ASDTVYLFQSSCLADRSKNE--VERSLFRNYCIDAEALELLRQTPSSPDTEVHEQCFRALGNICYDNNENRAAFFNLGGA 131 (604)
T ss_pred ccchhhhhhHHHHHHHhhhH--HHHHHHHHHhhHHHHHHHHHhCCCCCcccHHHHHHHHHhhhhccCchhHHHHHhcCCc
Confidence 34455666777888887554 6666554 45778888888899999999999999999999999999999999998
Q ss_pred HHHHHhhcCC-------ChHHHHHHHHHHHHhhccCC-ChhHHHhcCChHHHHHHhcc--CCHHHHHHHHHHHHHhccC-
Q 017249 113 PPLVELLKFQ-------NGTLRELAAAAILTLSAAAP-NKPAIAASGAAPLLVQILHS--GSVQGRVDAVTALHYLSTC- 181 (375)
Q Consensus 113 ~~Lv~lL~~~-------~~~~~~~a~~~L~~Ls~~~~-~~~~i~~~~~l~~L~~lL~~--~~~~~~~~a~~~L~~L~~~- 181 (375)
..++.+|+.- +.+....+...|.|...+.+ -+....+.|+++.|...+.- .+....+..+....||.+-
T Consensus 132 qivid~L~~~cs~d~~ane~~~~v~~g~l~Ny~l~~~~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~ 211 (604)
T KOG4500|consen 132 QIVIDVLKPYCSKDNPANEEYSAVAFGVLHNYILDSRELRAQVADAGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSFV 211 (604)
T ss_pred eehHhhhccccccCCccHHHHHHHHHHHHHHhhCCcHHHHHHHHhcccHHHHHHHhhcccccHHHHHHHHhccccHHHHH
Confidence 8888887542 34666777888999877655 57777899999999888754 4666666666666666532
Q ss_pred CCC-chhhhhcCCcHHHHHHhhhcccchHHHHHHHHHHHHhhCChhhhHHHhhccCcHHHHHHHhcc-CChHHH------
Q 017249 182 KEN-SSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVED-GSLVST------ 253 (375)
Q Consensus 182 ~~~-~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~-~~~~~~------ 253 (375)
.++ .....+......+++++.+.. .+++.+.+..+|...+.+...+-.+. ..|.+..++.+++. ....-+
T Consensus 212 ~e~~~~~~~d~sl~~~l~~ll~~~v-~~d~~eM~feila~~aend~Vkl~la-~~gl~e~~~~lv~~~k~~t~k~d~~~l 289 (604)
T KOG4500|consen 212 CEMLYPFCKDCSLVFMLLQLLPSMV-REDIDEMIFEILAKAAENDLVKLSLA-QNGLLEDSIDLVRNMKDFTKKTDMLNL 289 (604)
T ss_pred HHhhhhhhccchHHHHHHHHHHHhh-ccchhhHHHHHHHHHhcCcceeeehh-hcchHHHHHHHHHhcccccchHHHHHH
Confidence 222 333345667778888887764 34567889999999998888888888 68999999988864 221111
Q ss_pred -HHHHHHHHHhcccCcHHHHHHHHHcC-ChHHHHHHhhhCCHHHHHHHHHHHHHhhcCChh--hhhhhhhHHHHHHHHhh
Q 017249 254 -QHAVGALLSLCQSCRDKYRQLILKEG-AIPGLLRLTVEGTFEAQERARTLLDLLRDTPQE--KRLSSSVLEKIVYDIAA 329 (375)
Q Consensus 254 -~~a~~~L~~l~~~~~~~~~~~l~~~g-~v~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~~--~~~~~g~~~~l~~~l~~ 329 (375)
..++....-+..++ +..+.+...+ ++..++..+.+.|...+..++-++.|+.+.... .+++.|+++.|+..|..
T Consensus 290 ~k~~~el~vllltGD--eSMq~L~~~p~~l~~~~sw~~S~d~~l~t~g~LaigNfaR~D~~ci~~v~~~~~nkL~~~l~~ 367 (604)
T KOG4500|consen 290 FKRIAELDVLLLTGD--ESMQKLHADPQFLDFLESWFRSDDSNLITMGSLAIGNFARRDDICIQLVQKDFLNKLISCLMQ 367 (604)
T ss_pred HHhhhhHhhhhhcCc--hHHHHHhcCcHHHHHHHHHhcCCchhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHH
Confidence 23333344444444 4566777755 889999999999999999999999999988755 68899999999988753
Q ss_pred --cCCChHHHHHHHHHHHHHHH
Q 017249 330 --RVDGADKAAETAKRLLQDMV 349 (375)
Q Consensus 330 --~~~g~~~~~~~a~~~l~~l~ 349 (375)
.++|..+.+..+..+|++|.
T Consensus 368 ~~~vdgnV~~qhA~lsALRnl~ 389 (604)
T KOG4500|consen 368 EKDVDGNVERQHACLSALRNLM 389 (604)
T ss_pred hcCCCccchhHHHHHHHHHhcc
Confidence 46788888899999999984
No 25
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=99.48 E-value=9.4e-13 Score=103.06 Aligned_cols=118 Identities=31% Similarity=0.387 Sum_probs=108.9
Q ss_pred HHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhccChhhHHHHHHcCChHHHHHhhcCCChHHHHHHHHHHHHhhccCC
Q 017249 63 EFAAAGVVQPLVLMLVSPNLDAIESSLLALLNLAVRNERNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAP 142 (375)
Q Consensus 63 ~~~~~g~v~~Lv~~L~~~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~ 142 (375)
.+++.|+++.|+++|.+++.+++..++++|.+++.++++.+..+.+.|+++.++.+|.++++.++..++++|++++.+.+
T Consensus 2 ~~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~ 81 (120)
T cd00020 2 AVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPE 81 (120)
T ss_pred hHHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcH
Confidence 36788999999999999999999999999999999889999999999999999999999999999999999999998875
Q ss_pred -ChhHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhcc
Q 017249 143 -NKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLST 180 (375)
Q Consensus 143 -~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~~L~~ 180 (375)
....+...|+++.|++++...+..++..++++|.+|+.
T Consensus 82 ~~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~~ 120 (120)
T cd00020 82 DNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLAS 120 (120)
T ss_pred HHHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhhC
Confidence 45566788999999999999999999999999999863
No 26
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=99.48 E-value=1.4e-12 Score=102.03 Aligned_cols=118 Identities=27% Similarity=0.334 Sum_probs=110.5
Q ss_pred HhhHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhccCh
Q 017249 21 QRKQALIEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIESSLLALLNLAVRNE 100 (375)
Q Consensus 21 ~~~~~~l~~Lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~~~~~~~~~a~~~L~~L~~~~~ 100 (375)
+.+.|.++.++++|.+++++.+..++++|.+++... ++....+.+.|+++.++++|.++++.++..++++|.+++.+.+
T Consensus 3 ~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~-~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~ 81 (120)
T cd00020 3 VIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGN-NDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPE 81 (120)
T ss_pred HHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCC-HHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcH
Confidence 567889999999999999999999999999999997 7888999999999999999999999999999999999999877
Q ss_pred hhHHHHHHcCChHHHHHhhcCCChHHHHHHHHHHHHhhc
Q 017249 101 RNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSA 139 (375)
Q Consensus 101 ~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~ 139 (375)
..+..+...|+++.|++++...+..+++.++++|.+|+.
T Consensus 82 ~~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~~ 120 (120)
T cd00020 82 DNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLAS 120 (120)
T ss_pred HHHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhhC
Confidence 888888999999999999999999999999999999863
No 27
>PRK09687 putative lyase; Provisional
Probab=99.44 E-value=3.4e-11 Score=108.02 Aligned_cols=225 Identities=16% Similarity=0.068 Sum_probs=168.5
Q ss_pred ChHHHHHhhCCCCHHHHHHHHHHHHHhhccChhhHHHHHHcCChHHHHHhhcCCChHHHHHHHHHHHHhhccCCChhHHH
Q 017249 69 VVQPLVLMLVSPNLDAIESSLLALLNLAVRNERNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIA 148 (375)
Q Consensus 69 ~v~~Lv~~L~~~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~ 148 (375)
-++.|.+.|.+++..++..++++|..+-. ..+++.+..++.+.++.+|..++++|..|-..+..
T Consensus 24 ~~~~L~~~L~d~d~~vR~~A~~aL~~~~~-----------~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~----- 87 (280)
T PRK09687 24 NDDELFRLLDDHNSLKRISSIRVLQLRGG-----------QDVFRLAIELCSSKNPIERDIGADILSQLGMAKRC----- 87 (280)
T ss_pred cHHHHHHHHhCCCHHHHHHHHHHHHhcCc-----------chHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccc-----
Confidence 58899999999999999999999998753 23567888889999999999999999998543221
Q ss_pred hcCChHHHHHH-hccCCHHHHHHHHHHHHHhccCCCCchhhhhcCCcHHHHHHhhhcccchHHHHHHHHHHHHhhCChhh
Q 017249 149 ASGAAPLLVQI-LHSGSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEG 227 (375)
Q Consensus 149 ~~~~l~~L~~l-L~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~~~~~ 227 (375)
....++.|..+ ++++++.++..|+.+|.+++...... ...++..+...+.+. +..++..+..+|..+.
T Consensus 88 ~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~----~~~a~~~l~~~~~D~--~~~VR~~a~~aLg~~~----- 156 (280)
T PRK09687 88 QDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLY----SPKIVEQSQITAFDK--STNVRFAVAFALSVIN----- 156 (280)
T ss_pred hHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccccccc----chHHHHHHHHHhhCC--CHHHHHHHHHHHhccC-----
Confidence 22457778877 67788999999999999986433211 112444565666655 4478888888886542
Q ss_pred hHHHhhccCcHHHHHHHhccCChHHHHHHHHHHHHhcccCcHHHHHHHHHcCChHHHHHHhhhCCHHHHHHHHHHHHHhh
Q 017249 228 RIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLR 307 (375)
Q Consensus 228 ~~~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~~~~~A~~~L~~l~ 307 (375)
....++.|+.+|.+.++.++..|+.+|..+...+ ..+++.|+.++.+.++.+|..|++.|..+.
T Consensus 157 ------~~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~----------~~~~~~L~~~L~D~~~~VR~~A~~aLg~~~ 220 (280)
T PRK09687 157 ------DEAAIPLLINLLKDPNGDVRNWAAFALNSNKYDN----------PDIREAFVAMLQDKNEEIRIEAIIGLALRK 220 (280)
T ss_pred ------CHHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCC----------HHHHHHHHHHhcCCChHHHHHHHHHHHccC
Confidence 3458899999999999999999999999984333 245677899999999999999999999876
Q ss_pred cCChhhhhhhhhHHHHHHHHhhcCCChHHHHHHHHHHHHHHH
Q 017249 308 DTPQEKRLSSSVLEKIVYDIAARVDGADKAAETAKRLLQDMV 349 (375)
Q Consensus 308 ~~~~~~~~~~g~~~~l~~~l~~~~~g~~~~~~~a~~~l~~l~ 349 (375)
... +++.|+..|. ++. .+..|..+|..+-
T Consensus 221 ~~~--------av~~Li~~L~---~~~--~~~~a~~ALg~ig 249 (280)
T PRK09687 221 DKR--------VLSVLIKELK---KGT--VGDLIIEAAGELG 249 (280)
T ss_pred Chh--------HHHHHHHHHc---CCc--hHHHHHHHHHhcC
Confidence 543 7777777664 332 2344555555553
No 28
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=99.43 E-value=3.8e-11 Score=112.14 Aligned_cols=279 Identities=14% Similarity=0.048 Sum_probs=202.2
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCCC-CHHHHHHHHHHHHHhhccChhhH
Q 017249 25 ALIEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSP-NLDAIESSLLALLNLAVRNERNK 103 (375)
Q Consensus 25 ~~l~~Lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~~-~~~~~~~a~~~L~~L~~~~~~~r 103 (375)
+....++.+|..+|.-++..|+.+++.+.... ..........-.+..|...|+++ +.+.+.-++.+|..|.. .+.+|
T Consensus 101 ~~~~~fl~lL~~~d~~i~~~a~~iLt~l~~~~-~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~-~~~~R 178 (429)
T cd00256 101 KTWEPFFNLLNRQDQFIVHMSFSILAKLACFG-LAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLR-VDEYR 178 (429)
T ss_pred cchHHHHHHHcCCchhHHHHHHHHHHHHHhcC-ccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhC-CchHH
Confidence 45677888998899999999999999998765 22211111111334555666554 46778888999999998 67899
Q ss_pred HHHHHcCChHHHHHhhcCC--ChHHHHHHHHHHHHhhccCCChhHHHhcCChHHHHHHhccC-CHHHHHHHHHHHHHhcc
Q 017249 104 VKIATAGAIPPLVELLKFQ--NGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHSG-SVQGRVDAVTALHYLST 180 (375)
Q Consensus 104 ~~i~~~g~i~~Lv~lL~~~--~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~l~~L~~lL~~~-~~~~~~~a~~~L~~L~~ 180 (375)
..+.+.++++.|+.+|+.. +..++..++-|+|-|+.+++....+...+.++.|+++++.. ..++.+-++.+|.||..
T Consensus 179 ~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~ 258 (429)
T cd00256 179 FAFVLADGVPTLVKLLSNATLGFQLQYQSIFCIWLLTFNPHAAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLIS 258 (429)
T ss_pred HHHHHccCHHHHHHHHhhccccHHHHHHHHHHHHHHhccHHHHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhh
Confidence 9999999999999999764 56889999999999999988666667789999999999876 46789999999999987
Q ss_pred CC-------CCchhhhhcCCcHHHHHHhhhcccchHHHHHH-------HHHHHHhhCC---------------h------
Q 017249 181 CK-------ENSSPILDATAVPPLINLLKDCKKYSKFAEKA-------TALLEILSSS---------------E------ 225 (375)
Q Consensus 181 ~~-------~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a-------~~~L~~l~~~---------------~------ 225 (375)
.+ .....++..|+++.+-.+....-.++++.+.. -.-+..++.. |
T Consensus 259 ~~~~~~~~~~~~~~mv~~~l~~~l~~L~~rk~~DedL~edl~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~H~se~ 338 (429)
T cd00256 259 KRVDREVKKTAALQMVQCKVLKTLQSLEQRKYDDEDLTDDLKFLTEELKNSVQDLSSFDEYKSELRSGRLHWSPVHKSEK 338 (429)
T ss_pred cccccchhhhHHHHHHHcChHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcCCccCCCCCCCch
Confidence 43 23345566666655555544443343433211 1111222222 2
Q ss_pred ---hhhHHHhhc-cCcHHHHHHHhc-cCChHHHHHHHHHHHHhcccCcHHHHHHHHHcCChHHHHHHhhhCCHHHHHHHH
Q 017249 226 ---EGRIAITNS-DGGILTLVETVE-DGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERAR 300 (375)
Q Consensus 226 ---~~~~~~~~~-~g~v~~Lv~lL~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~~~~~A~ 300 (375)
+|...+-.+ ...+..|+.+|. +.++.+..-||.=|+.++.+. |.++..+-+.|+=..+++++.+.|++++.+|.
T Consensus 339 FW~EN~~kf~~~~~~llk~L~~iL~~s~d~~~laVAc~Dige~vr~~-P~gr~i~~~lg~K~~vM~Lm~h~d~~Vr~eAL 417 (429)
T cd00256 339 FWRENADRLNEKNYELLKILIHLLETSVDPIILAVACHDIGEYVRHY-PRGKDVVEQLGGKQRVMRLLNHEDPNVRYEAL 417 (429)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHhcCCCcceeehhhhhHHHHHHHC-ccHHHHHHHcCcHHHHHHHhcCCCHHHHHHHH
Confidence 233333322 224578899995 456777788999999999987 57788888899999999999999999999999
Q ss_pred HHHHHh
Q 017249 301 TLLDLL 306 (375)
Q Consensus 301 ~~L~~l 306 (375)
.++..+
T Consensus 418 ~avQkl 423 (429)
T cd00256 418 LAVQKL 423 (429)
T ss_pred HHHHHH
Confidence 998876
No 29
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.34 E-value=6.2e-10 Score=115.91 Aligned_cols=184 Identities=20% Similarity=0.156 Sum_probs=114.5
Q ss_pred hHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhccChhh
Q 017249 23 KQALIEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIESSLLALLNLAVRNERN 102 (375)
Q Consensus 23 ~~~~l~~Lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~~~~~~~~~a~~~L~~L~~~~~~~ 102 (375)
....++.|+..|.++++.++..|+..|..+.. .+.++.|+..|+++++.++..|+.+|..+....+
T Consensus 619 ~~~~~~~L~~~L~D~d~~VR~~Av~~L~~~~~------------~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~-- 684 (897)
T PRK13800 619 DAPSVAELAPYLADPDPGVRRTAVAVLTETTP------------PGFGPALVAALGDGAAAVRRAAAEGLRELVEVLP-- 684 (897)
T ss_pred cchhHHHHHHHhcCCCHHHHHHHHHHHhhhcc------------hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccC--
Confidence 45567899999999999999999999988642 2357889999999999999999999988743111
Q ss_pred HHHHHHcCChHHHHHhhcCCChHHHHHHHHHHHHhhccCCChhHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCC
Q 017249 103 KVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTCK 182 (375)
Q Consensus 103 r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~~L~~~~ 182 (375)
..+.|...|.+.++.+|..++.+|..+.. +....|+..|.++++.++..|+.+|..+-
T Consensus 685 --------~~~~L~~~L~~~d~~VR~~A~~aL~~~~~-----------~~~~~l~~~L~D~d~~VR~~Av~aL~~~~--- 742 (897)
T PRK13800 685 --------PAPALRDHLGSPDPVVRAAALDVLRALRA-----------GDAALFAAALGDPDHRVRIEAVRALVSVD--- 742 (897)
T ss_pred --------chHHHHHHhcCCCHHHHHHHHHHHHhhcc-----------CCHHHHHHHhcCCCHHHHHHHHHHHhccc---
Confidence 12466677777777787777777766531 11234556666666666666666666531
Q ss_pred CCchhhhhcCCcHHHHHHhhhcccchHHHHHHHHHHHHhhCChhhhHHHhhccCcHHHHHHHhccCChHHHHHHHHHHHH
Q 017249 183 ENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLS 262 (375)
Q Consensus 183 ~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~ 262 (375)
..+.|..++.+. +..++..+..+|..+... ....++.|..++.++++.+|..|+..|..
T Consensus 743 ----------~~~~l~~~l~D~--~~~VR~~aa~aL~~~~~~---------~~~~~~~L~~ll~D~d~~VR~aA~~aLg~ 801 (897)
T PRK13800 743 ----------DVESVAGAATDE--NREVRIAVAKGLATLGAG---------GAPAGDAVRALTGDPDPLVRAAALAALAE 801 (897)
T ss_pred ----------CcHHHHHHhcCC--CHHHHHHHHHHHHHhccc---------cchhHHHHHHHhcCCCHHHHHHHHHHHHh
Confidence 112334444433 234455555555444221 11224445555555555555555555554
Q ss_pred h
Q 017249 263 L 263 (375)
Q Consensus 263 l 263 (375)
+
T Consensus 802 ~ 802 (897)
T PRK13800 802 L 802 (897)
T ss_pred c
Confidence 4
No 30
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.33 E-value=1e-09 Score=114.28 Aligned_cols=249 Identities=17% Similarity=0.150 Sum_probs=191.5
Q ss_pred HhhHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhccCh
Q 017249 21 QRKQALIEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIESSLLALLNLAVRNE 100 (375)
Q Consensus 21 ~~~~~~l~~Lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~~~~~~~~~a~~~L~~L~~~~~ 100 (375)
+...+.++.|+..|.++++.++..|+..|..+.... + ..+.|...|.++++.++..++..|..+...+
T Consensus 648 ~~~~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~-~----------~~~~L~~~L~~~d~~VR~~A~~aL~~~~~~~- 715 (897)
T PRK13800 648 TTPPGFGPALVAALGDGAAAVRRAAAEGLRELVEVL-P----------PAPALRDHLGSPDPVVRAAALDVLRALRAGD- 715 (897)
T ss_pred hcchhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcc-C----------chHHHHHHhcCCCHHHHHHHHHHHHhhccCC-
Confidence 345667899999999999999999999998885433 1 1357888899999999999999999875322
Q ss_pred hhHHHHHHcCChHHHHHhhcCCChHHHHHHHHHHHHhhccCCChhHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhcc
Q 017249 101 RNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLST 180 (375)
Q Consensus 101 ~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~~L~~ 180 (375)
...|+..|.+.++.+|..|+.+|..+- ..+.|..++.++++.++..++.+|..+..
T Consensus 716 -----------~~~l~~~L~D~d~~VR~~Av~aL~~~~-------------~~~~l~~~l~D~~~~VR~~aa~aL~~~~~ 771 (897)
T PRK13800 716 -----------AALFAAALGDPDHRVRIEAVRALVSVD-------------DVESVAGAATDENREVRIAVAKGLATLGA 771 (897)
T ss_pred -----------HHHHHHHhcCCCHHHHHHHHHHHhccc-------------CcHHHHHHhcCCCHHHHHHHHHHHHHhcc
Confidence 346788899999999999999988751 23557888999999999999999998854
Q ss_pred CCCCchhhhhcCCcHHHHHHhhhcccchHHHHHHHHHHHHhhCChhhhHHHhhccCcHHHHHHHhccCChHHHHHHHHHH
Q 017249 181 CKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGAL 260 (375)
Q Consensus 181 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L 260 (375)
.. ...++.|..++.+. ++.++..++..|..+... ...+..++..|.+.+..+|..|+.+|
T Consensus 772 ~~--------~~~~~~L~~ll~D~--d~~VR~aA~~aLg~~g~~----------~~~~~~l~~aL~d~d~~VR~~Aa~aL 831 (897)
T PRK13800 772 GG--------APAGDAVRALTGDP--DPLVRAAALAALAELGCP----------PDDVAAATAALRASAWQVRQGAARAL 831 (897)
T ss_pred cc--------chhHHHHHHHhcCC--CHHHHHHHHHHHHhcCCc----------chhHHHHHHHhcCCChHHHHHHHHHH
Confidence 31 12367888888876 467888888888866321 12335678889998999999999999
Q ss_pred HHhcccCcHHHHHHHHHcCChHHHHHHhhhCCHHHHHHHHHHHHHhhcCChhhhhhhhhHHHHHHHHhhcCCChHHHHHH
Q 017249 261 LSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDTPQEKRLSSSVLEKIVYDIAARVDGADKAAET 340 (375)
Q Consensus 261 ~~l~~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~~~~~~~g~~~~l~~~l~~~~~g~~~~~~~ 340 (375)
..+.. ...++.|+.++.+.++.+|..|+.+|..+...+ ...+.|...+. +..+..+..
T Consensus 832 ~~l~~------------~~a~~~L~~~L~D~~~~VR~~A~~aL~~~~~~~-------~a~~~L~~al~---D~d~~Vr~~ 889 (897)
T PRK13800 832 AGAAA------------DVAVPALVEALTDPHLDVRKAAVLALTRWPGDP-------AARDALTTALT---DSDADVRAY 889 (897)
T ss_pred Hhccc------------cchHHHHHHHhcCCCHHHHHHHHHHHhccCCCH-------HHHHHHHHHHh---CCCHHHHHH
Confidence 87642 223488999999999999999999999873222 25566665553 556888888
Q ss_pred HHHHHHH
Q 017249 341 AKRLLQD 347 (375)
Q Consensus 341 a~~~l~~ 347 (375)
|.++|..
T Consensus 890 A~~aL~~ 896 (897)
T PRK13800 890 ARRALAH 896 (897)
T ss_pred HHHHHhh
Confidence 8888763
No 31
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.32 E-value=4.6e-10 Score=102.96 Aligned_cols=289 Identities=15% Similarity=0.127 Sum_probs=215.6
Q ss_pred hHHHHHhhHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHh
Q 017249 16 EEAWNQRKQALIEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIESSLLALLNL 95 (375)
Q Consensus 16 ~~~~~~~~~~~l~~Lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~~~~~~~~~a~~~L~~L 95 (375)
++...+...+.+.+|++++....++.+...++.+.|++.+. ..|..|+..|.+|.|..+|.++. -..-|+..|.++
T Consensus 336 eNK~~M~~~~iveKL~klfp~~h~dL~~~tl~LlfNlSFD~--glr~KMv~~GllP~l~~ll~~d~--~~~iA~~~lYh~ 411 (791)
T KOG1222|consen 336 ENKIVMEQNGIVEKLLKLFPIQHPDLRKATLMLLFNLSFDS--GLRPKMVNGGLLPHLASLLDSDT--KHGIALNMLYHL 411 (791)
T ss_pred cchHHHHhccHHHHHHHhcCCCCHHHHHHHHHHhhhccccc--cccHHHhhccchHHHHHHhCCcc--cchhhhhhhhhh
Confidence 44556777899999999999999999999999999999998 89999999999999999998763 234577888899
Q ss_pred hccChhhHHHHHHcCChHHHHHhhcCC-ChHHHHHHHHHHHHhhccCCChhHHHhcCChHHHHHH---------------
Q 017249 96 AVRNERNKVKIATAGAIPPLVELLKFQ-NGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQI--------------- 159 (375)
Q Consensus 96 ~~~~~~~r~~i~~~g~i~~Lv~lL~~~-~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~l~~L~~l--------------- 159 (375)
+. +...+..+....+++.++..+-+. +.++-...+..-.||+.+..+...+.+..++..|.+.
T Consensus 412 S~-dD~~K~MfayTdci~~lmk~v~~~~~~~vdl~lia~ciNl~lnkRNaQlvceGqgL~~LM~ra~k~~D~lLmK~vRn 490 (791)
T KOG1222|consen 412 SC-DDDAKAMFAYTDCIKLLMKDVLSGTGSEVDLALIALCINLCLNKRNAQLVCEGQGLDLLMERAIKSRDLLLMKVVRN 490 (791)
T ss_pred cc-CcHHHHHHHHHHHHHHHHHHHHhcCCceecHHHHHHHHHHHhccccceEEecCcchHHHHHHHhcccchHHHHHHHH
Confidence 98 567899999999999999876544 4444444444456777776665555544444444332
Q ss_pred ----------------------hcc-CCHHHHHHHHHHHHHhccCCCCchhh-hhcCCcHHHHHHhhhcccchHHHHHHH
Q 017249 160 ----------------------LHS-GSVQGRVDAVTALHYLSTCKENSSPI-LDATAVPPLINLLKDCKKYSKFAEKAT 215 (375)
Q Consensus 160 ----------------------L~~-~~~~~~~~a~~~L~~L~~~~~~~~~i-~~~g~i~~Lv~ll~~~~~~~~~~~~a~ 215 (375)
++. .+......++++|.||...+-....+ .+...+|-+-..|..+.....+.....
T Consensus 491 iSqHeg~tqn~FidyvgdLa~i~~nd~~E~F~~EClGtlanL~v~dldw~~ilq~~~LvPw~k~~L~pga~eddLvL~~v 570 (791)
T KOG1222|consen 491 ISQHEGATQNMFIDYVGDLAGIAKNDNSESFGLECLGTLANLKVTDLDWAKILQSENLVPWMKTQLQPGADEDDLVLQIV 570 (791)
T ss_pred hhhccchHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHhhcccCCCCHHHHHhhccccHHHHHhhcCCccchhhhhHHH
Confidence 211 23456778888889988765444444 457899999888887755555555556
Q ss_pred HHHHHhhCChhhhHHHhhccCcHHHHHHHhcc--CChHHHHHHHHHHHHhcccCcHHHHHHHHHc-CChHHHHHHhhhCC
Q 017249 216 ALLEILSSSEEGRIAITNSDGGILTLVETVED--GSLVSTQHAVGALLSLCQSCRDKYRQLILKE-GAIPGLLRLTVEGT 292 (375)
Q Consensus 216 ~~L~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~--~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~-g~v~~L~~ll~~~~ 292 (375)
-+++.++.+.....-+. .+|.++.++++|.. .+++..-.-+.++..+..+. ..++.+++. ..-..|+.++++.+
T Consensus 571 i~~GT~a~d~~cA~Lla-~a~~i~tlieLL~a~QeDDEfV~QiiyVF~Q~l~He--~tr~~miket~~~AylIDLMHDkN 647 (791)
T KOG1222|consen 571 IACGTMARDLDCARLLA-PAKLIDTLIELLQACQEDDEFVVQIIYVFLQFLKHE--LTRRLMIKETALGAYLIDLMHDKN 647 (791)
T ss_pred HHhhhhhhhhHHHHHhC-ccccHHHHHHHHHhhcccchHHHHHHHHHHHHHHHH--HHHHHHHhhccchHHHHHHHhccc
Confidence 66666666666555555 68999999999974 45666677777777777774 457777774 45568899999999
Q ss_pred HHHHHHHHHHHHHhhcCChh
Q 017249 293 FEAQERARTLLDLLRDTPQE 312 (375)
Q Consensus 293 ~~~~~~A~~~L~~l~~~~~~ 312 (375)
..+|+-+-.+|--++.+..+
T Consensus 648 ~eiRkVCDn~LdIiae~d~E 667 (791)
T KOG1222|consen 648 AEIRKVCDNALDIIAEHDKE 667 (791)
T ss_pred HHHHHHHHHHHHHHHHhhHH
Confidence 99999999999999887743
No 32
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=99.29 E-value=1.4e-10 Score=106.49 Aligned_cols=254 Identities=20% Similarity=0.186 Sum_probs=175.4
Q ss_pred HHHHHHHhhCChhhHHHHHhc---CChHHHHHhhCC--CCHHHHHHHHHHHHHhhccChhhHHHHHH------cCChHHH
Q 017249 47 RDIRKVVKKSSLKTRSEFAAA---GVVQPLVLMLVS--PNLDAIESSLLALLNLAVRNERNKVKIAT------AGAIPPL 115 (375)
Q Consensus 47 ~~l~~l~~~~~~~~~~~~~~~---g~v~~Lv~~L~~--~~~~~~~~a~~~L~~L~~~~~~~r~~i~~------~g~i~~L 115 (375)
..+..+-... ++.+..+++. +....++.+|+. ++.++....+..+..+..+++.....+.. ...+.++
T Consensus 32 ~~ik~~~~~~-~~~~~~~~~~~~~~~~~~~l~lL~~~~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~f 110 (312)
T PF03224_consen 32 SLIKKLDKQS-KEERRELLEEDGDQYASLFLNLLNKLSSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPF 110 (312)
T ss_dssp HHHHHHHHHH-H-------------------HHHHHH---HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHH
T ss_pred HHHHHHHCCC-HHHHHHHHHhchhhHHHHHHHHHHHccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHH
Confidence 3444444444 3444445443 235566666643 57899999999999999988877766665 2368899
Q ss_pred HHhhcCCChHHHHHHHHHHHHhhccCCChhHHHhcCChHHHHHHhcc----CCHHHHHHHHHHHHHhccCCCCchhhhhc
Q 017249 116 VELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHS----GSVQGRVDAVTALHYLSTCKENSSPILDA 191 (375)
Q Consensus 116 v~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~l~~L~~lL~~----~~~~~~~~a~~~L~~L~~~~~~~~~i~~~ 191 (375)
++++.+++..++..++..|..+....+.+......+.++.+++.+.+ .+...+..++.+|.+|...++.+..+.+.
T Consensus 111 l~ll~~~D~~i~~~a~~iLt~Ll~~~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f~~~ 190 (312)
T PF03224_consen 111 LKLLDRNDSFIQLKAAFILTSLLSQGPKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVFWKS 190 (312)
T ss_dssp HHH-S-SSHHHHHHHHHHHHHHHTSTTT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHHHTH
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHHHhc
Confidence 99999999999999999999998876654443335666777777765 34566799999999999999999999999
Q ss_pred CCcHHHHHHh-----hhcccchHHHHHHHHHHHHhhCChhhhHHHhhccCcHHHHHHHhcc-CChHHHHHHHHHHHHhcc
Q 017249 192 TAVPPLINLL-----KDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVED-GSLVSTQHAVGALLSLCQ 265 (375)
Q Consensus 192 g~i~~Lv~ll-----~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~-~~~~~~~~a~~~L~~l~~ 265 (375)
++++.++.++ .++.....++-.++-++|.|+.+++....+. ..+.++.|+.+++. ..+++..-++.+|.|+..
T Consensus 191 ~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~-~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~ 269 (312)
T PF03224_consen 191 NGVSPLFDILRKQATNSNSSGIQLQYQALLCLWLLSFEPEIAEELN-KKYLIPLLADILKDSIKEKVVRVSLAILRNLLS 269 (312)
T ss_dssp HHHHHHHHHHH---------HHHHHHHHHHHHHHHTTSHHHHHHHH-TTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTS
T ss_pred CcHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHhcCHHHHHHHh-ccchHHHHHHHHHhcccchHHHHHHHHHHHHHh
Confidence 9999999999 3333355778889999999999999999998 56799999999974 568999999999999999
Q ss_pred cCcHHHHHHHHHcCChHHHHHHhhh--CCHHHHHHHHHH
Q 017249 266 SCRDKYRQLILKEGAIPGLLRLTVE--GTFEAQERARTL 302 (375)
Q Consensus 266 ~~~~~~~~~l~~~g~v~~L~~ll~~--~~~~~~~~A~~~ 302 (375)
.........++..|+++.|-.+... .|++..+.-..+
T Consensus 270 ~~~~~~~~~mv~~~~l~~l~~L~~rk~~Dedl~edl~~L 308 (312)
T PF03224_consen 270 KAPKSNIELMVLCGLLKTLQNLSERKWSDEDLTEDLEFL 308 (312)
T ss_dssp SSSTTHHHHHHHH-HHHHHHHHHSS--SSHHHHHHHHHH
T ss_pred ccHHHHHHHHHHccHHHHHHHHhcCCCCCHHHHHHHHHH
Confidence 8754477888888888777776654 477777654443
No 33
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=99.27 E-value=2.5e-09 Score=101.72 Aligned_cols=318 Identities=16% Similarity=0.125 Sum_probs=203.7
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCCC--CHHHHHHHHHHHHHhhccChhhHHHH
Q 017249 29 ELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSP--NLDAIESSLLALLNLAVRNERNKVKI 106 (375)
Q Consensus 29 ~Lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~~--~~~~~~~a~~~L~~L~~~~~~~r~~i 106 (375)
.++.-+...+++....|..-..++..+. +..+..+.+.|.++.|+.+++.. ..+........+..+..+.......+
T Consensus 13 ~~l~~L~~~dpe~lvrai~~~kN~vig~-~~~K~~~ik~GAv~~Ll~L~s~e~~s~~~k~~~~~llns~f~~eqd~v~sv 91 (678)
T KOG1293|consen 13 DLLYRLLHLDPEQLVRAIYMSKNLVIGF-TDNKETNIKLGAVELLLALLSLEDGSTELKNGFAVLLNSLFLGEQDKVDSV 91 (678)
T ss_pred HHHHhhhcCCHHHHHHHHHHhcchhhcC-CCccchhhhhcchHHHHhhccccCCchhhhhhHHHHHHhHHhhccchHHHH
Confidence 3444555778888889999999998888 66777899999999999998765 46667677778888888888889999
Q ss_pred HHcCChHHHHHhhcCCC-hHHHHHHHHHHHHhhccCCChhHH---HhcCChHHHHHHhccCCHHHH--------------
Q 017249 107 ATAGAIPPLVELLKFQN-GTLRELAAAAILTLSAAAPNKPAI---AASGAAPLLVQILHSGSVQGR-------------- 168 (375)
Q Consensus 107 ~~~g~i~~Lv~lL~~~~-~~~~~~a~~~L~~Ls~~~~~~~~i---~~~~~l~~L~~lL~~~~~~~~-------------- 168 (375)
...+.++.|+++|...+ ..++...+.++.++....+.++.. .....++.+..++..+.....
T Consensus 92 L~~~~ll~Ll~LLs~sD~~~~le~~l~~lR~Ifet~~~q~~~~s~~~~sIi~~~s~l~s~~lk~~~~l~~~~~a~~s~~~ 171 (678)
T KOG1293|consen 92 LRIIELLKLLQLLSESDSLNVLEKTLRCLRTIFETSKYQDKKMSLHLKSIIVKFSLLYSIELKYISRLDVSRAAHLSSTK 171 (678)
T ss_pred HHHhhHHHHHHHhcCcchHhHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhccccccc
Confidence 99999999999999888 889999999999988765433222 122223333222220100000
Q ss_pred ------------------------HHHHHHHHHhc------cCCC-Cchhh----hhcCCcHH--HHHHhhhcccchHHH
Q 017249 169 ------------------------VDAVTALHYLS------TCKE-NSSPI----LDATAVPP--LINLLKDCKKYSKFA 211 (375)
Q Consensus 169 ------------------------~~a~~~L~~L~------~~~~-~~~~i----~~~g~i~~--Lv~ll~~~~~~~~~~ 211 (375)
..-+.++..++ .+++ ....+ .+.|+.+. +.+++.++.......
T Consensus 172 ~hq~Il~Na~i~ekI~~l~~~~s~~~RlaaL~~~sr~~~iL~Nn~~~sm~~l~~L~d~~v~~r~~v~rL~k~~~~s~~l~ 251 (678)
T KOG1293|consen 172 DHQLILCNAGILEKINILLMYLSSKLRLAALLCLSRGDRILRNNPLGSMFLLGLLKDKGVNIRCVVTRLLKDPDFSERLR 251 (678)
T ss_pred hhhheeccccchhhHHHHHHhhhHHHHHHHHHHhhccceeeecCchhHHHHHHHHhccccchhhhhhhhhhCCCccHHHH
Confidence 01112222222 1111 11001 11122221 111111111000000
Q ss_pred --------------------------------------------------------------------------------
Q 017249 212 -------------------------------------------------------------------------------- 211 (375)
Q Consensus 212 -------------------------------------------------------------------------------- 211 (375)
T Consensus 252 sl~cl~~~~~~s~~~d~l~~~~~~~dmgd~~i~q~~~i~l~~~P~~s~l~~~~~l~c~~a~~~sklq~~~~e~~~~~~~~ 331 (678)
T KOG1293|consen 252 SLECLVPYLRKSFNYDPLPWWFIFFDMGDSLIVQYNCIVLMNDPGLSTLDHTNVLFCILARFASKLQLPQHEEATLKTTT 331 (678)
T ss_pred HHHHHHHHHhccccccccccceeeccCchHHHHHHhhheeecCCceeehhhhhhhHHHHHHHHHhhhhHHhhhhhhhhHH
Confidence
Q ss_pred ---------------------------------------------------------------HHHHHHHHHhhCChhh-
Q 017249 212 ---------------------------------------------------------------EKATALLEILSSSEEG- 227 (375)
Q Consensus 212 ---------------------------------------------------------------~~a~~~L~~l~~~~~~- 227 (375)
.+++-++.+++.+-..
T Consensus 332 ellf~~~sl~a~~~~~~~i~l~e~~i~~~~~~~~~i~~~k~~l~~~t~~~l~~~~~~kd~~~~aaa~l~~~s~srsV~aL 411 (678)
T KOG1293|consen 332 ELLFICASLAASDEKYRLILLNETLILNHLEYGLEISLKKEILETTTESHLMCLPPIKDHDFVAAALLCLKSFSRSVSAL 411 (678)
T ss_pred HHHHHHHHHhhcchhhhHHHhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHH
Confidence 1112222222221111
Q ss_pred hHHHhhccCcHHHHHHHhccCChHHHHHHHHHHHHhcccCcHHHHHHHHHcCChHHHHHHhhhCCHHHHHHHHHHHHHhh
Q 017249 228 RIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLR 307 (375)
Q Consensus 228 ~~~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~~~~~A~~~L~~l~ 307 (375)
+.. .....+.+.|++++.+++..+...++++|+|+.-.-. ..+..+++.|+|+.|.+++.+.++.++..+.|+|+++.
T Consensus 412 ~tg-~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs-~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~ 489 (678)
T KOG1293|consen 412 RTG-LKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFS-NLKSKFLRNNGIDILESMLTDPDFNSRANSLWVLRHLM 489 (678)
T ss_pred HcC-CccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcc-cHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHHH
Confidence 111 2245678899999999999999999999999987642 56899999999999999999999999999999999998
Q ss_pred cCChhh---hhhhhhHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHH
Q 017249 308 DTPQEK---RLSSSVLEKIVYDIAARVDGADKAAETAKRLLQDMVQR 351 (375)
Q Consensus 308 ~~~~~~---~~~~g~~~~l~~~l~~~~~g~~~~~~~a~~~l~~l~~~ 351 (375)
-...++ ..-..+-...+..+. .|.....++++-.+|+||+-.
T Consensus 490 f~~de~~k~~~~~ki~a~~i~~l~--nd~d~~Vqeq~fqllRNl~c~ 534 (678)
T KOG1293|consen 490 FNCDEEEKFQLLAKIPANLILDLI--NDPDWAVQEQCFQLLRNLTCN 534 (678)
T ss_pred hcchHHHHHHHHHHhhHHHHHHHH--hCCCHHHHHHHHHHHHHhhcC
Confidence 777542 122222222333343 577799999999999999633
No 34
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.25 E-value=2.6e-09 Score=95.52 Aligned_cols=184 Identities=21% Similarity=0.220 Sum_probs=150.0
Q ss_pred CCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhccChhhHHHHHHcCChHHH
Q 017249 36 NGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIESSLLALLNLAVRNERNKVKIATAGAIPPL 115 (375)
Q Consensus 36 s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~L 115 (375)
+.+++.+..|+.-|..++..- .+..-+...||+.+++.++++.++.+|+.|+++|+..+..+|..+..+.+.|+.+.|
T Consensus 94 s~~le~ke~ald~Le~lve~i--DnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~L 171 (342)
T KOG2160|consen 94 SVDLEDKEDALDNLEELVEDI--DNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKL 171 (342)
T ss_pred cCCHHHHHHHHHHHHHHHHhh--hhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHH
Confidence 568899999999999999888 788889999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcCC-ChHHHHHHHHHHHHhhccCC-ChhHHHhcCChHHHHHHhccC--CHHHHHHHHHHHHHhccCCCCchhhhh-
Q 017249 116 VELLKFQ-NGTLRELAAAAILTLSAAAP-NKPAIAASGAAPLLVQILHSG--SVQGRVDAVTALHYLSTCKENSSPILD- 190 (375)
Q Consensus 116 v~lL~~~-~~~~~~~a~~~L~~Ls~~~~-~~~~i~~~~~l~~L~~lL~~~--~~~~~~~a~~~L~~L~~~~~~~~~i~~- 190 (375)
+..+.+. +..++..|+.++.++..+.. ....+...++...|.+++.++ +...+..++..+.+|.........+..
T Consensus 172 l~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~~ 251 (342)
T KOG2160|consen 172 LKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIASS 251 (342)
T ss_pred HHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHHH
Confidence 9999876 55677999999999988754 677788888899999999995 577899999999999866433333444
Q ss_pred cCCcHHHHHHhhhcccchHHHHHHHHHHHHhhC
Q 017249 191 ATAVPPLINLLKDCKKYSKFAEKATALLEILSS 223 (375)
Q Consensus 191 ~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~ 223 (375)
.+....++.+..... ..+.+.+...+..+..
T Consensus 252 ~~f~~~~~~l~~~l~--~~~~e~~l~~~l~~l~ 282 (342)
T KOG2160|consen 252 LGFQRVLENLISSLD--FEVNEAALTALLSLLS 282 (342)
T ss_pred hhhhHHHHHHhhccc--hhhhHHHHHHHHHHHH
Confidence 455555555555442 2456667666655544
No 35
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=99.24 E-value=1.4e-08 Score=95.07 Aligned_cols=319 Identities=13% Similarity=0.059 Sum_probs=223.8
Q ss_pred HhHHHHHHHHhc-CCCHHHHHHHHHHHHHHHhhCChhhHHHHHhc-----CChHHHHHhhCCCCHHHHHHHHHHHHHhhc
Q 017249 24 QALIEELSDKLI-NGDLETKIEAARDIRKVVKKSSLKTRSEFAAA-----GVVQPLVLMLVSPNLDAIESSLLALLNLAV 97 (375)
Q Consensus 24 ~~~l~~Lv~~L~-s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~-----g~v~~Lv~~L~~~~~~~~~~a~~~L~~L~~ 97 (375)
...+..++.+|+ .+..++....+..+..+.... +.....|.+. ....+++.+|..++.-+...++..|..+..
T Consensus 52 ~~y~~~~l~ll~~~~~~d~vqyvL~Li~dll~~~-~~~~~~f~~~~~~~~~~~~~fl~lL~~~d~~i~~~a~~iLt~l~~ 130 (429)
T cd00256 52 GQYVKTFVNLLSQIDKDDTVRYVLTLIDDMLQED-DTRVKLFHDDALLKKKTWEPFFNLLNRQDQFIVHMSFSILAKLAC 130 (429)
T ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHhc-hHHHHHHHHHhhccccchHHHHHHHcCCchhHHHHHHHHHHHHHh
Confidence 356777888887 667888889999999999988 6666666664 467788899999999999999999999885
Q ss_pred cChhhHHHHHHcCChHHHHHhhcCC-ChHHHHHHHHHHHHhhccCCChhHHHhcCChHHHHHHhccC--CHHHHHHHHHH
Q 017249 98 RNERNKVKIATAGAIPPLVELLKFQ-NGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHSG--SVQGRVDAVTA 174 (375)
Q Consensus 98 ~~~~~r~~i~~~g~i~~Lv~lL~~~-~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~l~~L~~lL~~~--~~~~~~~a~~~ 174 (375)
..+.........-.++.|...++++ +...+..++.+|..|...++.|..+...++++.|+++|+.. +...++.++-+
T Consensus 131 ~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~ 210 (429)
T cd00256 131 FGLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYRFAFVLADGVPTLVKLLSNATLGFQLQYQSIFC 210 (429)
T ss_pred cCccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHHHHHHHccCHHHHHHHHhhccccHHHHHHHHHH
Confidence 4332211111111334566666654 46778889999999999999999888888999999999764 45789999999
Q ss_pred HHHhccCCCCchhhhhcCCcHHHHHHhhhcccchHHHHHHHHHHHHhhCCh-------hhhHHHhhccCcHHHHHHHhcc
Q 017249 175 LHYLSTCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSE-------EGRIAITNSDGGILTLVETVED 247 (375)
Q Consensus 175 L~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~~~-------~~~~~~~~~~g~v~~Lv~lL~~ 247 (375)
+|-|+..++........+.++.++++++... .+++.+-++.+|.|+...+ .....++ .. .++.++..|..
T Consensus 211 lWlLSF~~~~~~~~~~~~~i~~l~~i~k~s~-KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv-~~-~l~~~l~~L~~ 287 (429)
T cd00256 211 IWLLTFNPHAAEVLKRLSLIQDLSDILKEST-KEKVIRIVLAIFRNLISKRVDREVKKTAALQMV-QC-KVLKTLQSLEQ 287 (429)
T ss_pred HHHHhccHHHHHhhccccHHHHHHHHHHhhh-hHHHHHHHHHHHHHHhhcccccchhhhHHHHHH-Hc-ChHHHHHHHhc
Confidence 9999988777677777899999999999875 4577888999999998743 2233444 33 44555555542
Q ss_pred ---CChHHHHHHH-------HHHHHhcc--------------c-----Cc---HHHHHHHHHcC--ChHHHHHHhh-hCC
Q 017249 248 ---GSLVSTQHAV-------GALLSLCQ--------------S-----CR---DKYRQLILKEG--AIPGLLRLTV-EGT 292 (375)
Q Consensus 248 ---~~~~~~~~a~-------~~L~~l~~--------------~-----~~---~~~~~~l~~~g--~v~~L~~ll~-~~~ 292 (375)
.++.+.+.-- ..+..++. . +. .++...+-+.+ ++..|++++. +.|
T Consensus 288 rk~~DedL~edl~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~H~se~FW~EN~~kf~~~~~~llk~L~~iL~~s~d 367 (429)
T cd00256 288 RKYDDEDLTDDLKFLTEELKNSVQDLSSFDEYKSELRSGRLHWSPVHKSEKFWRENADRLNEKNYELLKILIHLLETSVD 367 (429)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcCCccCCCCCCCchHHHHHHHHHHhcchHHHHHHHHHHhcCCC
Confidence 2333322111 11111111 1 10 12334444432 6688888885 567
Q ss_pred HHHHHHHHHHHHHhhcCChh---hhhhhhhHHHHHHHHhhcCCChHHHHHHHHHHHHHHH
Q 017249 293 FEAQERARTLLDLLRDTPQE---KRLSSSVLEKIVYDIAARVDGADKAAETAKRLLQDMV 349 (375)
Q Consensus 293 ~~~~~~A~~~L~~l~~~~~~---~~~~~g~~~~l~~~l~~~~~g~~~~~~~a~~~l~~l~ 349 (375)
|.+..-|+.=+..+.++.|. -+-+.|+=..++..|. ...+..+..|-.+++.|.
T Consensus 368 ~~~laVAc~Dige~vr~~P~gr~i~~~lg~K~~vM~Lm~---h~d~~Vr~eAL~avQklm 424 (429)
T cd00256 368 PIILAVACHDIGEYVRHYPRGKDVVEQLGGKQRVMRLLN---HEDPNVRYEALLAVQKLM 424 (429)
T ss_pred cceeehhhhhHHHHHHHCccHHHHHHHcCcHHHHHHHhc---CCCHHHHHHHHHHHHHHH
Confidence 88887788877777776543 2345777777887775 345899999999998875
No 36
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=99.23 E-value=1e-09 Score=100.38 Aligned_cols=276 Identities=17% Similarity=0.144 Sum_probs=201.0
Q ss_pred HHHHHhhHhHHHHHHHHhcCCCHHH--HHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCC-CCHHHHHHHHHHHH
Q 017249 17 EAWNQRKQALIEELSDKLINGDLET--KIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVS-PNLDAIESSLLALL 93 (375)
Q Consensus 17 ~~~~~~~~~~l~~Lv~~L~s~~~~~--~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~-~~~~~~~~a~~~L~ 93 (375)
.+..+...+++..|++++++++.+. +.+|.+.|-.+... +++++++..| +..++.+.+. ..++.+...+..|.
T Consensus 172 LCD~iR~~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~a---eN~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~ 247 (832)
T KOG3678|consen 172 LCDAIRLDGGLDLLLRMFQAPNLETSVRVEAARLLEQILVA---ENRDRVARIG-LGVILNLAKEREPVELARSVAGILE 247 (832)
T ss_pred hhhHhhccchHHHHHHHHhCCchhHHHHHHHHHHHHHHHhh---hhhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHH
Confidence 3557788899999999999988765 88999999887755 4899998877 5555555533 35788899999999
Q ss_pred HhhccChhhHHHHHHcCChHHHHHhhcCCChHHHHHHHHHHHHhhccC--CChhHHHhcCChHHHHHHhccCCHHHHHHH
Q 017249 94 NLAVRNERNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAA--PNKPAIAASGAAPLLVQILHSGSVQGRVDA 171 (375)
Q Consensus 94 ~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~--~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a 171 (375)
++.+.+++....+++.|++..++--.+..+|.+..+++-+|.|++.+. ..+..+++...-+.|..+-.+.+.-.+.+|
T Consensus 248 ~mFKHSeet~~~Lvaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~skDel~R~~A 327 (832)
T KOG3678|consen 248 HMFKHSEETCQRLVAAGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSKDELLRLHA 327 (832)
T ss_pred HHhhhhHHHHHHHHhhcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcchHHHHHHHH
Confidence 999999999999999999999999999999999999999999998874 367788888888899988888888889999
Q ss_pred HHHHHHhccCCCCchhhhhcCC---cHHHHHHhhhcccchHHHHHHHHHHHHhhCChhhhHHHhhccCcHHHHHHHhccC
Q 017249 172 VTALHYLSTCKENSSPILDATA---VPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDG 248 (375)
Q Consensus 172 ~~~L~~L~~~~~~~~~i~~~g~---i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~ 248 (375)
|.+.+.|+.+.+.-..+-.+|. +++++..+..+. ... +..... .-+....++.|+.+|++.
T Consensus 328 ClAV~vlat~KE~E~~VrkS~TlaLVEPlva~~DP~~----FAR-----------D~hd~a-QG~~~d~LqRLvPlLdS~ 391 (832)
T KOG3678|consen 328 CLAVAVLATNKEVEREVRKSGTLALVEPLVASLDPGR----FAR-----------DAHDYA-QGRGPDDLQRLVPLLDSN 391 (832)
T ss_pred HHHHhhhhhhhhhhHHHhhccchhhhhhhhhccCcch----hhh-----------hhhhhh-ccCChHHHHHhhhhhhcc
Confidence 9999999988766666555554 344444433221 111 100000 001234577899999865
Q ss_pred ChHHHHHHHHHHHHhcccCcHHHHHH-HHHcCChHHHHHHhhhCCHHHHHHHHHHHHHhhcCChh
Q 017249 249 SLVSTQHAVGALLSLCQSCRDKYRQL-ILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDTPQE 312 (375)
Q Consensus 249 ~~~~~~~a~~~L~~l~~~~~~~~~~~-l~~~g~v~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~~ 312 (375)
.-+.+--++.-++.=+.-...+.+.. +.+-|+++.|.++..+.+.-..+.|..+|..+.+..+.
T Consensus 392 R~EAq~i~AF~l~~EAaIKs~Q~K~kVFseIGAIQaLKevaSS~d~vaakfAseALtviGEEVP~ 456 (832)
T KOG3678|consen 392 RLEAQCIGAFYLCAEAAIKSLQGKTKVFSEIGAIQALKEVASSPDEVAAKFASEALTVIGEEVPY 456 (832)
T ss_pred hhhhhhhHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHhccccCh
Confidence 54443333333322222111123333 44579999999999988888888899999999987654
No 37
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.20 E-value=1e-08 Score=99.24 Aligned_cols=282 Identities=17% Similarity=0.181 Sum_probs=216.0
Q ss_pred HhHHHHHHHHhc-CCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCCC--CHHHHHHHHHHHHHhhccCh
Q 017249 24 QALIEELSDKLI-NGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSP--NLDAIESSLLALLNLAVRNE 100 (375)
Q Consensus 24 ~~~l~~Lv~~L~-s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~~--~~~~~~~a~~~L~~L~~~~~ 100 (375)
.+.|++|+..+. +.=++.++.|++.|..+++.- |.. +-..|+++|+..|..+ |+++...++.++.++...++
T Consensus 21 aETI~kLcDRvessTL~eDRR~A~rgLKa~srkY----R~~-Vga~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd 95 (970)
T KOG0946|consen 21 AETIEKLCDRVESSTLLEDRRDAVRGLKAFSRKY----REE-VGAQGMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDD 95 (970)
T ss_pred HhHHHHHHHHHhhccchhhHHHHHHHHHHHHHHH----HHH-HHHcccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCc
Confidence 567899999887 456788999999999987544 443 3455699999999775 79999999999999886542
Q ss_pred ------hhH----------HHHHH-cCChHHHHHhhcCCChHHHHHHHHHHHHhhccCC--ChhHH-HhcCChHHHHHHh
Q 017249 101 ------RNK----------VKIAT-AGAIPPLVELLKFQNGTLRELAAAAILTLSAAAP--NKPAI-AASGAAPLLVQIL 160 (375)
Q Consensus 101 ------~~r----------~~i~~-~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~--~~~~i-~~~~~l~~L~~lL 160 (375)
..+ +.++. .+.|..|+..++..+..+|..++..+.++....+ .+..+ ..+-+|..|+.+|
T Consensus 96 ~~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL 175 (970)
T KOG0946|consen 96 SPEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLL 175 (970)
T ss_pred chhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHH
Confidence 111 23443 7889999999999999999999999999877654 34444 5788999999999
Q ss_pred ccCCHHHHHHHHHHHHHhccCCCCchhhhh-cCCcHHHHHHhhhcc--cchHHHHHHHHHHHHhhCChhhhHHHhhccCc
Q 017249 161 HSGSVQGRVDAVTALHYLSTCKENSSPILD-ATAVPPLINLLKDCK--KYSKFAEKATALLEILSSSEEGRIAITNSDGG 237 (375)
Q Consensus 161 ~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~-~g~i~~Lv~ll~~~~--~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~ 237 (375)
.+....++-.++..|+.|+.++...+.++. .+++..|..++.... +...+.+.|+..|.||-.++...+.++.+.+.
T Consensus 176 ~DsrE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~~~ 255 (970)
T KOG0946|consen 176 RDSREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFREGSY 255 (970)
T ss_pred hhhhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHhcccc
Confidence 999999999999999999999888887776 789999999998643 23357788999999999765444444448899
Q ss_pred HHHHHHHhcc---CCh----------HHHHHHHHHHHHhcccCc-----HHHHHHHHHcCChHHHHHHhhhC--CHHHHH
Q 017249 238 ILTLVETVED---GSL----------VSTQHAVGALLSLCQSCR-----DKYRQLILKEGAIPGLLRLTVEG--TFEAQE 297 (375)
Q Consensus 238 v~~Lv~lL~~---~~~----------~~~~~a~~~L~~l~~~~~-----~~~~~~l~~~g~v~~L~~ll~~~--~~~~~~ 297 (375)
+|+|.++|.- ++. .-...++.++..+..-++ ..++..+.+.+++..|+.++.+. ..+++.
T Consensus 256 i~rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~ss~ll~~Lc~il~~~~vp~dIlt 335 (970)
T KOG0946|consen 256 IPRLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQKALVSSHLLDVLCTILMHPGVPADILT 335 (970)
T ss_pred HHHHHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcchHHHHHHHHcCCCCcHhHHH
Confidence 9999988842 221 112345666666655433 24556788899999999976644 578888
Q ss_pred HHHHHHHHhhcCC
Q 017249 298 RARTLLDLLRDTP 310 (375)
Q Consensus 298 ~A~~~L~~l~~~~ 310 (375)
.+.-+++..-+..
T Consensus 336 esiitvAevVRgn 348 (970)
T KOG0946|consen 336 ESIITVAEVVRGN 348 (970)
T ss_pred HHHHHHHHHHHhc
Confidence 8888888776655
No 38
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=99.16 E-value=6.4e-10 Score=102.05 Aligned_cols=215 Identities=18% Similarity=0.166 Sum_probs=156.1
Q ss_pred HHHHHHHhc--CCCHHHHHHHHHHHHHHHhhCChhhHHHHHhc------CChHHHHHhhCCCCHHHHHHHHHHHHHhhcc
Q 017249 27 IEELSDKLI--NGDLETKIEAARDIRKVVKKSSLKTRSEFAAA------GVVQPLVLMLVSPNLDAIESSLLALLNLAVR 98 (375)
Q Consensus 27 l~~Lv~~L~--s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~------g~v~~Lv~~L~~~~~~~~~~a~~~L~~L~~~ 98 (375)
...++.+|+ +++++.....+..+..+.... +...+.+... ....++++++.++|.-++..|+..|..+...
T Consensus 57 ~~~~l~lL~~~~~~~d~v~yvL~li~dll~~~-~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~ 135 (312)
T PF03224_consen 57 ASLFLNLLNKLSSNDDTVQYVLTLIDDLLSDD-PSRVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSLLSQ 135 (312)
T ss_dssp -----HHHHHH---HHHHHHHHHHHHHHHH-S-SSSHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHccCcHHHHHHHHHHHHHHHhcC-HHHHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHHHHc
Confidence 455556665 478899999999999999988 6666666552 2678899999999999999999999999875
Q ss_pred ChhhHHHHHHcCChHHHHHhhcC----CChHHHHHHHHHHHHhhccCCChhHHHhcCChHHHHHHh-----ccC--CHHH
Q 017249 99 NERNKVKIATAGAIPPLVELLKF----QNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQIL-----HSG--SVQG 167 (375)
Q Consensus 99 ~~~~r~~i~~~g~i~~Lv~lL~~----~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~l~~L~~lL-----~~~--~~~~ 167 (375)
.+..... ...+.++.++..+.+ .+.+.+..++.+|.+|...++.+..+.+.++++.|.+++ .++ +..+
T Consensus 136 ~~~~~~~-~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql 214 (312)
T PF03224_consen 136 GPKRSEK-LVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVFWKSNGVSPLFDILRKQATNSNSSGIQL 214 (312)
T ss_dssp TTT--HH-HHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHHHTHHHHHHHHHHHH---------HHHH
T ss_pred CCccccc-hHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHHHhcCcHHHHHHHHHhhcccCCCCchhH
Confidence 4443333 225566788877765 345677899999999999889999999999999999999 222 4678
Q ss_pred HHHHHHHHHHhccCCCCchhhhhcCCcHHHHHHhhhcccchHHHHHHHHHHHHhhCChh--hhHHHhhccCcHHHHHHHh
Q 017249 168 RVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEE--GRIAITNSDGGILTLVETV 245 (375)
Q Consensus 168 ~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~~~~--~~~~~~~~~g~v~~Lv~lL 245 (375)
+++++.++|-|+..++....+...+.++.|+++++... .+++.+-++.+|.|+..... ....++ ..|+ ..+++.|
T Consensus 215 ~Y~~ll~lWlLSF~~~~~~~~~~~~~i~~L~~i~~~~~-KEKvvRv~la~l~Nl~~~~~~~~~~~mv-~~~~-l~~l~~L 291 (312)
T PF03224_consen 215 QYQALLCLWLLSFEPEIAEELNKKYLIPLLADILKDSI-KEKVVRVSLAILRNLLSKAPKSNIELMV-LCGL-LKTLQNL 291 (312)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHH---SHHHHHHHHHHHHHTTSSSSTTHHHHHH-HH-H-HHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHhccchHHHHHHHHHhcc-cchHHHHHHHHHHHHHhccHHHHHHHHH-HccH-HHHHHHH
Confidence 99999999999999999999999899999999999876 45788889999999998655 777777 3444 4444444
Q ss_pred c
Q 017249 246 E 246 (375)
Q Consensus 246 ~ 246 (375)
.
T Consensus 292 ~ 292 (312)
T PF03224_consen 292 S 292 (312)
T ss_dssp H
T ss_pred h
Confidence 3
No 39
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=99.15 E-value=3.2e-09 Score=96.22 Aligned_cols=277 Identities=14% Similarity=0.041 Sum_probs=198.2
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCC-hHHHHHhhCC-CCHHHHHHHHHHHHHhhccChhhHH
Q 017249 27 IEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGV-VQPLVLMLVS-PNLDAIESSLLALLNLAVRNERNKV 104 (375)
Q Consensus 27 l~~Lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~-v~~Lv~~L~~-~~~~~~~~a~~~L~~L~~~~~~~r~ 104 (375)
-.+.+.+|...+......+.++|+.++... . ++-...+... ...|-..+.+ .+.+.+.-++++|..+.. -+++|.
T Consensus 116 ~~~fl~ll~r~d~~iv~~~~~Ils~la~~g-~-~~~~~~e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~-~~eyR~ 192 (442)
T KOG2759|consen 116 WLSFLNLLNRQDTFIVEMSFRILSKLACFG-N-CKMELSELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLR-VDEYRY 192 (442)
T ss_pred hHHHHHHHhcCChHHHHHHHHHHHHHHHhc-c-ccccchHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhc-Ccchhh
Confidence 567788888889988888999999998776 2 2111111111 2233344444 667888999999999998 678999
Q ss_pred HHHHcCChHHHHHhhcCC--ChHHHHHHHHHHHHhhccCCChhHHHhcCChHHHHHHhccCC-HHHHHHHHHHHHHhccC
Q 017249 105 KIATAGAIPPLVELLKFQ--NGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHSGS-VQGRVDAVTALHYLSTC 181 (375)
Q Consensus 105 ~i~~~g~i~~Lv~lL~~~--~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~l~~L~~lL~~~~-~~~~~~a~~~L~~L~~~ 181 (375)
.++...++..++..+.+. +..++...+.|+|-|+.++.....+...+.++.|.++++... ..+.+-++.++.|+...
T Consensus 193 ~~v~adg~~~l~~~l~s~~~~~QlQYqsifciWlLtFn~~~ae~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k 272 (442)
T KOG2759|consen 193 AFVIADGVSLLIRILASTKCGFQLQYQSIFCIWLLTFNPHAAEKLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDK 272 (442)
T ss_pred eeeecCcchhhHHHHhccCcchhHHHHHHHHHHHhhcCHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999999999999988433 788999999999999999887777777899999999998764 67899999999999876
Q ss_pred CC-------CchhhhhcCCcHHHHHHhhh-cccchHHHHHHH-------HHHHHhhCC---------------h------
Q 017249 182 KE-------NSSPILDATAVPPLINLLKD-CKKYSKFAEKAT-------ALLEILSSS---------------E------ 225 (375)
Q Consensus 182 ~~-------~~~~i~~~g~i~~Lv~ll~~-~~~~~~~~~~a~-------~~L~~l~~~---------------~------ 225 (375)
.+ ....++..+ +++.++.|.. .-.++++....- .-...|+.. |
T Consensus 273 ~~~~~~~k~~~~~mv~~~-v~k~l~~L~~rkysDEDL~~di~~L~e~L~~svq~LsSFDeY~sEl~sG~L~WSP~Hk~e~ 351 (442)
T KOG2759|consen 273 GPDRETKKDIASQMVLCK-VLKTLQSLEERKYSDEDLVDDIEFLTEKLKNSVQDLSSFDEYKSELRSGRLEWSPVHKSEK 351 (442)
T ss_pred CchhhHHHHHHHHHHhcC-chHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhCCcCCCccccccc
Confidence 52 233444444 4444455543 322333332111 111222322 1
Q ss_pred ---hhhHHHhh-ccCcHHHHHHHhccCC-hHHHHHHHHHHHHhcccCcHHHHHHHHHcCChHHHHHHhhhCCHHHHHHHH
Q 017249 226 ---EGRIAITN-SDGGILTLVETVEDGS-LVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERAR 300 (375)
Q Consensus 226 ---~~~~~~~~-~~g~v~~Lv~lL~~~~-~~~~~~a~~~L~~l~~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~~~~~A~ 300 (375)
+|...+-. ....+..|+.+|+..+ |.+-.-||.=+.....+. |+++..+.+.|+=+.+++++.+.||+|+.+|.
T Consensus 352 FW~eNa~rlnennyellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~y-P~gk~vv~k~ggKe~vM~Llnh~d~~Vry~AL 430 (442)
T KOG2759|consen 352 FWRENADRLNENNYELLKILIKLLETSNDPIILCVACHDIGEYVRHY-PEGKAVVEKYGGKERVMNLLNHEDPEVRYHAL 430 (442)
T ss_pred hHHHhHHHHhhccHHHHHHHHHHHhcCCCCceeehhhhhHHHHHHhC-chHhHHHHHhchHHHHHHHhcCCCchHHHHHH
Confidence 12222221 2245778899998654 777778888899998887 68899999999999999999999999999999
Q ss_pred HHHHHhhc
Q 017249 301 TLLDLLRD 308 (375)
Q Consensus 301 ~~L~~l~~ 308 (375)
.++..|-.
T Consensus 431 lavQ~lm~ 438 (442)
T KOG2759|consen 431 LAVQKLMV 438 (442)
T ss_pred HHHHHHHh
Confidence 98877643
No 40
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.12 E-value=3.1e-09 Score=101.00 Aligned_cols=307 Identities=14% Similarity=0.107 Sum_probs=210.8
Q ss_pred HhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhc----CChHHHHHhhCCCCHHHHHHHHHHHHHhhccC
Q 017249 24 QALIEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAA----GVVQPLVLMLVSPNLDAIESSLLALLNLAVRN 99 (375)
Q Consensus 24 ~~~l~~Lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~----g~v~~Lv~~L~~~~~~~~~~a~~~L~~L~~~~ 99 (375)
-+.+|.|.++|.+++...+.-|..+|.+++.++ .+.-+.-+.. -.+|.++++.+++++.+|..|+.++....-.
T Consensus 127 pelLp~L~~~L~s~d~n~~EgA~~AL~KIcEDs-a~~lds~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~- 204 (885)
T KOG2023|consen 127 PELLPQLCELLDSPDYNTCEGAFGALQKICEDS-AQFLDSDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIII- 204 (885)
T ss_pred hhHHHHHHHHhcCCcccccchhHHHHHHHHhhh-HHHHhhhcccCchHHhHHHHHHHHhCCChhHHHHHHhhhhheeec-
Confidence 457899999999999999999999999999888 3332221111 2588999999999999999999999987753
Q ss_pred hhhHHHHHH-cCChHHHHHhhcCCChHHHHHHHHHHHHhhccCCChhHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHh
Q 017249 100 ERNKVKIAT-AGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYL 178 (375)
Q Consensus 100 ~~~r~~i~~-~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~~L 178 (375)
.....+.. -..++-+..+-...++++|...+.++..|......+-.---.++++.++..-++.+..+-..||.....+
T Consensus 205 -~~qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~dkl~phl~~IveyML~~tqd~dE~VALEACEFwla~ 283 (885)
T KOG2023|consen 205 -QTQALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVRPDKLVPHLDNIVEYMLQRTQDVDENVALEACEFWLAL 283 (885)
T ss_pred -CcHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHHhcccchHHHHHHHHHHccCcchhHHHHHHHHHHHH
Confidence 23444444 3456677777777899999999999999876544332222357788888888899999999999999999
Q ss_pred ccCCCCchhhhh--cCCcHHHHHHhhhcccchH-----------------------------------------------
Q 017249 179 STCKENSSPILD--ATAVPPLINLLKDCKKYSK----------------------------------------------- 209 (375)
Q Consensus 179 ~~~~~~~~~i~~--~g~i~~Lv~ll~~~~~~~~----------------------------------------------- 209 (375)
+..+..+..+.. ...+|.|+.-+.-+..+..
T Consensus 284 aeqpi~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDd 363 (885)
T KOG2023|consen 284 AEQPICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDD 363 (885)
T ss_pred hcCcCcHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCCchhhhccchhhhchhccCccccccccccccccccc
Confidence 988744433332 3566666653322111100
Q ss_pred -------HHH---HHHHHHHHhhCChhhhHHHhhccCcHHHHHHHh----ccCChHHHHHHHHHHHHhcccCcHHHHHHH
Q 017249 210 -------FAE---KATALLEILSSSEEGRIAITNSDGGILTLVETV----EDGSLVSTQHAVGALLSLCQSCRDKYRQLI 275 (375)
Q Consensus 210 -------~~~---~a~~~L~~l~~~~~~~~~~~~~~g~v~~Lv~lL----~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l 275 (375)
++. +++.+|.|+ . ....++.++++| .+..=.+|+.++-+|+.++.++. +-+
T Consensus 364 D~~~dWNLRkCSAAaLDVLanv----------f-~~elL~~l~PlLk~~L~~~~W~vrEagvLAlGAIAEGcM----~g~ 428 (885)
T KOG2023|consen 364 DAFSDWNLRKCSAAALDVLANV----------F-GDELLPILLPLLKEHLSSEEWKVREAGVLALGAIAEGCM----QGF 428 (885)
T ss_pred cccccccHhhccHHHHHHHHHh----------h-HHHHHHHHHHHHHHHcCcchhhhhhhhHHHHHHHHHHHh----hhc
Confidence 111 122222222 1 123445555554 45556788999999999988763 233
Q ss_pred HH--cCChHHHHHHhhhCCHHHHHHHHHHHHHhhcCChh-h--hhhhhhHHHHHHHHhhcCCChHHHHHHHHHHHHHHHH
Q 017249 276 LK--EGAIPGLLRLTVEGTFEAQERARTLLDLLRDTPQE-K--RLSSSVLEKIVYDIAARVDGADKAAETAKRLLQDMVQ 350 (375)
Q Consensus 276 ~~--~g~v~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~~-~--~~~~g~~~~l~~~l~~~~~g~~~~~~~a~~~l~~l~~ 350 (375)
+. ...+|.|++++.+..|-+|.-++|+|...+..--+ . ..=..++.+|+..+ .|+..+.++.|..+...+-+
T Consensus 429 ~p~LpeLip~l~~~L~DKkplVRsITCWTLsRys~wv~~~~~~~~f~pvL~~ll~~l---lD~NK~VQEAAcsAfAtleE 505 (885)
T KOG2023|consen 429 VPHLPELIPFLLSLLDDKKPLVRSITCWTLSRYSKWVVQDSRDEYFKPVLEGLLRRL---LDSNKKVQEAACSAFATLEE 505 (885)
T ss_pred ccchHHHHHHHHHHhccCccceeeeeeeeHhhhhhhHhcCChHhhhHHHHHHHHHHH---hcccHHHHHHHHHHHHHHHH
Confidence 33 34789999999999999999999999988764411 1 11122445555554 47779999999998888754
Q ss_pred H
Q 017249 351 R 351 (375)
Q Consensus 351 ~ 351 (375)
.
T Consensus 506 ~ 506 (885)
T KOG2023|consen 506 E 506 (885)
T ss_pred h
Confidence 4
No 41
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.12 E-value=1.1e-08 Score=89.07 Aligned_cols=279 Identities=19% Similarity=0.174 Sum_probs=190.8
Q ss_pred hHHHHHhhCCCCHHHHHHHHHHHHHhhccChhhHHHHHH-cCChHHHHHhhcCCChHHHHHHHHHHHHhhccCCChhHHH
Q 017249 70 VQPLVLMLVSPNLDAIESSLLALLNLAVRNERNKVKIAT-AGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIA 148 (375)
Q Consensus 70 v~~Lv~~L~~~~~~~~~~a~~~L~~L~~~~~~~r~~i~~-~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~ 148 (375)
...++++|.+.++.++..|+.-+..++.. ..+..... .-.++.+.+++....+ -+.|+.+|.|++..+.-+..+.
T Consensus 5 l~elv~ll~~~sP~v~~~AV~~l~~lt~~--~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~~~l~~~ll 80 (353)
T KOG2973|consen 5 LVELVELLHSLSPPVRKAAVEHLLGLTGR--GLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQKEELRKKLL 80 (353)
T ss_pred HHHHHHHhccCChHHHHHHHHHHhhcccc--chhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHhhHHHHHHHH
Confidence 34688999999999999999999999985 44544443 3457788888877666 5688899999999988777776
Q ss_pred hcCChHHHHHHhccCCHHHHHHHHHHHHHhccCCCCchhhhh-------cCCcHHHHHHhhhcccchHHHHHHHHHHHHh
Q 017249 149 ASGAAPLLVQILHSGSVQGRVDAVTALHYLSTCKENSSPILD-------ATAVPPLINLLKDCKKYSKFAEKATALLEIL 221 (375)
Q Consensus 149 ~~~~l~~L~~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~-------~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l 221 (375)
.. .+..+++++.++....-...|.+|.||+..++....+.. .|.+.....+...+-....-......++.||
T Consensus 81 ~~-~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~vf~nl 159 (353)
T KOG2973|consen 81 QD-LLKVLMDMLTDPQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAPVFANL 159 (353)
T ss_pred HH-HHHHHHHHhcCcccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccchhHHHHHHHHH
Confidence 55 888899999888777788889999999988765554432 3444444444443321112235677889999
Q ss_pred hCChhhhHHHhhccCcHH--HHHHHhccCChHHHHHHHHHHHHhcccCcHHHHHHHHHc--CChHHHH------------
Q 017249 222 SSSEEGRIAITNSDGGIL--TLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKE--GAIPGLL------------ 285 (375)
Q Consensus 222 ~~~~~~~~~~~~~~g~v~--~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~--g~v~~L~------------ 285 (375)
+..+.+|..+. +...++ .++.+-..++..-+...+++|.|+|... .....+... ..+|.++
T Consensus 160 s~~~~gR~l~~-~~k~~p~~kll~ft~~~s~vRr~GvagtlkN~cFd~--~~h~~lL~e~~~lLp~iLlPlagpee~sEE 236 (353)
T KOG2973|consen 160 SQFEAGRKLLL-EPKRFPDQKLLPFTSEDSQVRRGGVAGTLKNCCFDA--KLHEVLLDESINLLPAILLPLAGPEELSEE 236 (353)
T ss_pred hhhhhhhhHhc-chhhhhHhhhhcccccchhhhccchHHHHHhhhccc--hhHHHHhcchHHHHHHHHhhcCCccccCHH
Confidence 99999999988 455332 3444444345556678899999999876 333333332 2333332
Q ss_pred ---------HHhh-----hCCHHHHHHHHHHHHHhhcCC-hhhhhhhhhHHHHHHHHhhcCCChHHHHHHHHHHHHHHHH
Q 017249 286 ---------RLTV-----EGTFEAQERARTLLDLLRDTP-QEKRLSSSVLEKIVYDIAARVDGADKAAETAKRLLQDMVQ 350 (375)
Q Consensus 286 ---------~ll~-----~~~~~~~~~A~~~L~~l~~~~-~~~~~~~g~~~~l~~~l~~~~~g~~~~~~~a~~~l~~l~~ 350 (375)
+++- +.+|.+++.-+.+|-.||-.. ..+.+....+.++++.+..-... ++.++..-.+.+.+++
T Consensus 237 dm~~LP~eLQyLp~dKeRepdpdIrk~llEai~lLcaT~~GRe~lR~kgvYpilRElhk~e~d-ed~~~ace~vvq~Lv~ 315 (353)
T KOG2973|consen 237 DMAKLPVELQYLPEDKEREPDPDIRKMLLEALLLLCATRAGREVLRSKGVYPILRELHKWEED-EDIREACEQVVQMLVR 315 (353)
T ss_pred HHhcCCHhhhcCCccccCCCChHHHHHHHHHHHHHHhhhHhHHHHHhcCchHHHHHHhcCCCc-HHHHHHHHHHHHHHHh
Confidence 3332 357889999999877776544 22455555555677888755543 7788877778888876
Q ss_pred HHHHHhH
Q 017249 351 RSMELSM 357 (375)
Q Consensus 351 ~s~~~~~ 357 (375)
.-...-|
T Consensus 316 ~e~~~G~ 322 (353)
T KOG2973|consen 316 LEPEIGI 322 (353)
T ss_pred cccccch
Confidence 4443333
No 42
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=99.11 E-value=4.2e-08 Score=93.52 Aligned_cols=118 Identities=19% Similarity=0.171 Sum_probs=96.4
Q ss_pred cCCcHHHHHHhhhcccchHHHHHHHHHHHHhhC-ChhhhHHHhhccCcHHHHHHHhccCChHHHHHHHHHHHHhcccCcH
Q 017249 191 ATAVPPLINLLKDCKKYSKFAEKATALLEILSS-SEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRD 269 (375)
Q Consensus 191 ~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~-~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~ 269 (375)
..++.+|+.++..+ ...+...++++|+|+.. ...-+..++ ..|+|+.+..++.+.++..+..++|+|+++..++..
T Consensus 418 ~dv~~plvqll~dp--~~~i~~~~lgai~NlVmefs~~kskfl-~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f~~de 494 (678)
T KOG1293|consen 418 NDVAQPLVQLLMDP--EIMIMGITLGAICNLVMEFSNLKSKFL-RNNGIDILESMLTDPDFNSRANSLWVLRHLMFNCDE 494 (678)
T ss_pred chhHHHHHHHhhCc--chhHHHHHHHHHHHHHhhcccHHHHHH-HcCcHHHHHHHhcCCCchHHHHHHHHHHHHHhcchH
Confidence 35777888888654 44677889999999986 455666677 689999999999999999999999999999999865
Q ss_pred HHHHHHHHcCChHHHHHHhhhCCHHHHHHHHHHHHHhhcCCh
Q 017249 270 KYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDTPQ 311 (375)
Q Consensus 270 ~~~~~l~~~g~v~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~ 311 (375)
+-+......=....++.+..++++.+||.+..+|+|+.+..+
T Consensus 495 ~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c~~~ 536 (678)
T KOG1293|consen 495 EEKFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLTCNSR 536 (678)
T ss_pred HHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhhcCcH
Confidence 444444444566777889999999999999999999998853
No 43
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.10 E-value=1.5e-08 Score=98.81 Aligned_cols=257 Identities=19% Similarity=0.163 Sum_probs=199.3
Q ss_pred HHHHHHHHhcC-CCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCCC-CHHHHHHHHHHHHHhhccChhhH
Q 017249 26 LIEELSDKLIN-GDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSP-NLDAIESSLLALLNLAVRNERNK 103 (375)
Q Consensus 26 ~l~~Lv~~L~s-~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~~-~~~~~~~a~~~L~~L~~~~~~~r 103 (375)
-+.+|+.-|+. +|+..|.+|+.-+..+.....++.-..|--.-++|.|+.+|+.+ +.++...|+++|.+|+.--|...
T Consensus 168 k~kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~ 247 (1051)
T KOG0168|consen 168 KAKKLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSS 247 (1051)
T ss_pred HHHHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchh
Confidence 57788888874 48999999998887776544245544444456799999999876 58999999999999998888888
Q ss_pred HHHHHcCChHHHHHhhcC-CChHHHHHHHHHHHHhhccCCChhHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccC-
Q 017249 104 VKIATAGAIPPLVELLKF-QNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTC- 181 (375)
Q Consensus 104 ~~i~~~g~i~~Lv~lL~~-~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~~L~~~- 181 (375)
..++..++||.|+.-|-. .--++-+.++.+|-.++...+ ..+...|++-..+..|+--+..+++.|+.+..|+|..
T Consensus 248 a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~--~AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi 325 (1051)
T KOG0168|consen 248 AIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHP--KAILQAGALSAVLSYLDFFSIHAQRVALAIAANCCKSI 325 (1051)
T ss_pred heeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcc--HHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999986644 467888999999999987543 5667889999999999988899999999999999965
Q ss_pred -CCCchhhhhcCCcHHHHHHhhhcccchHHHHHHHHHHHHhh----CChhhhHHHhhccCcHHHHHHHhccC----ChHH
Q 017249 182 -KENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILS----SSEEGRIAITNSDGGILTLVETVEDG----SLVS 252 (375)
Q Consensus 182 -~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~----~~~~~~~~~~~~~g~v~~Lv~lL~~~----~~~~ 252 (375)
++.-..+++ .+|.|..+|... +.+..+.++-++..++ ..++--.++. ..|.+....++|.-. +..+
T Consensus 326 ~sd~f~~v~e--alPlL~~lLs~~--D~k~ies~~ic~~ri~d~f~h~~~kLdql~-s~dLi~~~~qLlsvt~t~Ls~~~ 400 (1051)
T KOG0168|consen 326 RSDEFHFVME--ALPLLTPLLSYQ--DKKPIESVCICLTRIADGFQHGPDKLDQLC-SHDLITNIQQLLSVTPTILSNGT 400 (1051)
T ss_pred CCccchHHHH--HHHHHHHHHhhc--cchhHHHHHHHHHHHHHhcccChHHHHHHh-chhHHHHHHHHHhcCcccccccc
Confidence 344444444 789999999876 3355677776666665 3455556666 689999999888632 2445
Q ss_pred HHHHHHHHHHhcccCcHHHHHHHHHcCChHHHHHHhhh
Q 017249 253 TQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVE 290 (375)
Q Consensus 253 ~~~a~~~L~~l~~~~~~~~~~~l~~~g~v~~L~~ll~~ 290 (375)
....++.|..+|.++ +.....+.+.++...|..++..
T Consensus 401 ~~~vIrmls~msS~~-pl~~~tl~k~~I~~~L~~il~g 437 (1051)
T KOG0168|consen 401 YTGVIRMLSLMSSGS-PLLFRTLLKLDIADTLKRILQG 437 (1051)
T ss_pred hhHHHHHHHHHccCC-hHHHHHHHHhhHHHHHHHHHhc
Confidence 567788888888887 5777788889999999887763
No 44
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.08 E-value=4.6e-08 Score=98.77 Aligned_cols=316 Identities=15% Similarity=0.124 Sum_probs=208.7
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhccChhhHH
Q 017249 25 ALIEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIESSLLALLNLAVRNERNKV 104 (375)
Q Consensus 25 ~~l~~Lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~~~~~~~~~a~~~L~~L~~~~~~~r~ 104 (375)
+.++.|+...+|+++..+..|+.+|..+...-....+..+. ...+.+.+.+.+++..++..|++++...+...+.++.
T Consensus 118 ell~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~~~~~~~--~l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~ 195 (1075)
T KOG2171|consen 118 ELLQFLFQSTKSPNPSLRESALLILSSLPETFGNTLQPHLD--DLLRLFSQTMTDPSSPVRVAAVRALGAFAEYLENNKS 195 (1075)
T ss_pred HHHHHHHHHhcCCCcchhHHHHHHHHhhhhhhccccchhHH--HHHHHHHHhccCCcchHHHHHHHHHHHHHHHhccchH
Confidence 56777778888999999999999999997654112222111 2345566677777766999999999998865543333
Q ss_pred HHHH-cCChHHHHHhh----cCCChHHHHHHHHHHHHhhccCCC--hhHHHhcCChHHHHHHhccC--CHHHHHHHHHHH
Q 017249 105 KIAT-AGAIPPLVELL----KFQNGTLRELAAAAILTLSAAAPN--KPAIAASGAAPLLVQILHSG--SVQGRVDAVTAL 175 (375)
Q Consensus 105 ~i~~-~g~i~~Lv~lL----~~~~~~~~~~a~~~L~~Ls~~~~~--~~~i~~~~~l~~L~~lL~~~--~~~~~~~a~~~L 175 (375)
.... ...+|.++..+ ..++...-..++.+|..+....+. ++.+ ...+..-+.+..+. +..++..|+..|
T Consensus 196 ~~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~pk~l~~~l--~~ii~~~l~Ia~n~~l~~~~R~~ALe~i 273 (1075)
T KOG2171|consen 196 EVDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALIELLESEPKLLRPHL--SQIIQFSLEIAKNKELENSIRHLALEFL 273 (1075)
T ss_pred HHHHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhchHHHHHHH--HHHHHHHHHHhhcccccHHHHHHHHHHH
Confidence 3333 23455555554 455666677888888888776542 3333 24566666666655 467899999999
Q ss_pred HHhccCCCCchhh---hhcCCcHHHHHHhhhcccc--------------hHHHHHHHHHHHHhhCChhhhHHHhhccCcH
Q 017249 176 HYLSTCKENSSPI---LDATAVPPLINLLKDCKKY--------------SKFAEKATALLEILSSSEEGRIAITNSDGGI 238 (375)
Q Consensus 176 ~~L~~~~~~~~~i---~~~g~i~~Lv~ll~~~~~~--------------~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v 238 (375)
..++.......+. .-...++.++.++.+...+ ..-...|..+|--++.+-.+...+ .-.+
T Consensus 274 vs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~~v~---p~~~ 350 (1075)
T KOG2171|consen 274 VSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHLGGKQVL---PPLF 350 (1075)
T ss_pred HHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhccccccccccccCcHHHHHHHHHHHHhcCChhheh---HHHH
Confidence 9998762211111 2234666677766543211 012234566666666543333221 2345
Q ss_pred HHHHHHhccCChHHHHHHHHHHHHhcccCcHHHHHHHHHcCChHHHHHHhhhCCHHHHHHHHHHHHHhhcCChh---hhh
Q 017249 239 LTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDTPQE---KRL 315 (375)
Q Consensus 239 ~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~~---~~~ 315 (375)
+.+-.+|.+.+..-|..++.+|..++.++. +.... .=..+++.++..+.+++|+||..|+.++..++.+-+. +..
T Consensus 351 ~~l~~~l~S~~w~~R~AaL~Als~i~EGc~-~~m~~-~l~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~iqk~~ 428 (1075)
T KOG2171|consen 351 EALEAMLQSTEWKERHAALLALSVIAEGCS-DVMIG-NLPKILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQKKH 428 (1075)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHcccH-HHHHH-HHHHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHHHHH
Confidence 566677788899999999999999998873 32221 1156888888899999999999999999999987744 333
Q ss_pred hhhhHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHH
Q 017249 316 SSSVLEKIVYDIAARVDGADKAAETAKRLLQDMVQR 351 (375)
Q Consensus 316 ~~g~~~~l~~~l~~~~~g~~~~~~~a~~~l~~l~~~ 351 (375)
..-+.++|+..+- ..++++.+..|+.+|-++...
T Consensus 429 ~e~l~~aL~~~ld--~~~~~rV~ahAa~al~nf~E~ 462 (1075)
T KOG2171|consen 429 HERLPPALIALLD--STQNVRVQAHAAAALVNFSEE 462 (1075)
T ss_pred HHhccHHHHHHhc--ccCchHHHHHHHHHHHHHHHh
Confidence 3446667777665 445589998888888777654
No 45
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=99.07 E-value=6.4e-08 Score=95.72 Aligned_cols=292 Identities=21% Similarity=0.190 Sum_probs=198.7
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhccChhhHH
Q 017249 25 ALIEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIESSLLALLNLAVRNERNKV 104 (375)
Q Consensus 25 ~~l~~Lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~~~~~~~~~a~~~L~~L~~~~~~~r~ 104 (375)
.+.+.++.++.+.+...|.-+--++..+...+ ++. -.+ ++..+.+-|.++++.++-.|+++|.++. +++...
T Consensus 42 ~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~-~~~-~~l----~~n~l~kdl~~~n~~~~~lAL~~l~~i~--~~~~~~ 113 (526)
T PF01602_consen 42 FLFMEVIKLISSKDLELKRLGYLYLSLYLHED-PEL-LIL----IINSLQKDLNSPNPYIRGLALRTLSNIR--TPEMAE 113 (526)
T ss_dssp STHHHHHCTCSSSSHHHHHHHHHHHHHHTTTS-HHH-HHH----HHHHHHHHHCSSSHHHHHHHHHHHHHH---SHHHHH
T ss_pred hHHHHHHHHhCCCCHHHHHHHHHHHHHHhhcc-hhH-HHH----HHHHHHHhhcCCCHHHHHHHHhhhhhhc--ccchhh
Confidence 45677788888889999998888888888887 442 222 3677888889999999999999999998 355554
Q ss_pred HHHHcCChHHHHHhhcCCChHHHHHHHHHHHHhhccCCChhHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCCCC
Q 017249 105 KIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTCKEN 184 (375)
Q Consensus 105 ~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~~L~~~~~~ 184 (375)
.+ ++.+.+++.++++.+|..|+.++..+....+. .+... .++.+.++|.+.++.++..|+.++..+ ..++.
T Consensus 114 ~l-----~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~--~~~~~-~~~~l~~lL~d~~~~V~~~a~~~l~~i-~~~~~ 184 (526)
T PF01602_consen 114 PL-----IPDVIKLLSDPSPYVRKKAALALLKIYRKDPD--LVEDE-LIPKLKQLLSDKDPSVVSAALSLLSEI-KCNDD 184 (526)
T ss_dssp HH-----HHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHC--CHHGG-HHHHHHHHTTHSSHHHHHHHHHHHHHH-HCTHH
T ss_pred HH-----HHHHHHHhcCCchHHHHHHHHHHHHHhccCHH--HHHHH-HHHHHhhhccCCcchhHHHHHHHHHHH-ccCcc
Confidence 44 67899999999999999999999999875332 22222 689999999999999999999999999 21111
Q ss_pred chhhhhcCCcHHHHHHhhhcccchHHHHHHHHHHHHhhCChhhhHHHhhccCcHHHHHHHhccCChHHHHHHHHHHHHhc
Q 017249 185 SSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLC 264 (375)
Q Consensus 185 ~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~ 264 (375)
...-.-...++.|.+++... ++-.+...+++|..++........- ...++.+..++.+.++.+.-.++.++..+.
T Consensus 185 ~~~~~~~~~~~~L~~~l~~~--~~~~q~~il~~l~~~~~~~~~~~~~---~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~ 259 (526)
T PF01602_consen 185 SYKSLIPKLIRILCQLLSDP--DPWLQIKILRLLRRYAPMEPEDADK---NRIIEPLLNLLQSSSPSVVYEAIRLIIKLS 259 (526)
T ss_dssp HHTTHHHHHHHHHHHHHTCC--SHHHHHHHHHHHTTSTSSSHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred hhhhhHHHHHHHhhhccccc--chHHHHHHHHHHHhcccCChhhhhH---HHHHHHHHHHhhccccHHHHHHHHHHHHhh
Confidence 10001112334444444343 3345556777777776543322210 346677777777777888888888888776
Q ss_pred ccCcHHHHHHHHHcCChHHHHHHhhhCCHHHHHHHHHHHHHhhcCChhhhhhhhhHHHHHHHHhhcCCChHHHHHHHHHH
Q 017249 265 QSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDTPQEKRLSSSVLEKIVYDIAARVDGADKAAETAKRL 344 (375)
Q Consensus 265 ~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~~~~~~~g~~~~l~~~l~~~~~g~~~~~~~a~~~ 344 (375)
... . .-..+++.|..++.+.++.++..+...|..+....+..+. ..... + ..+. .+.+.-.+.++..+
T Consensus 260 ~~~--~-----~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~~~~v~-~~~~~-~-~~l~--~~~d~~Ir~~~l~l 327 (526)
T PF01602_consen 260 PSP--E-----LLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQSNPPAVF-NQSLI-L-FFLL--YDDDPSIRKKALDL 327 (526)
T ss_dssp SSH--H-----HHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHCHHHHG-THHHH-H-HHHH--CSSSHHHHHHHHHH
T ss_pred cch--H-----HHHhhHHHHHHHhhcccchhehhHHHHHHHhhcccchhhh-hhhhh-h-heec--CCCChhHHHHHHHH
Confidence 543 2 3456778888888888888998888888888877643333 11111 1 2232 23446677777777
Q ss_pred HHHHHH
Q 017249 345 LQDMVQ 350 (375)
Q Consensus 345 l~~l~~ 350 (375)
|..+..
T Consensus 328 L~~l~~ 333 (526)
T PF01602_consen 328 LYKLAN 333 (526)
T ss_dssp HHHH--
T ss_pred Hhhccc
Confidence 777764
No 46
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=99.04 E-value=8.2e-08 Score=94.96 Aligned_cols=289 Identities=16% Similarity=0.197 Sum_probs=199.2
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhccChhhHHH
Q 017249 26 LIEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIESSLLALLNLAVRNERNKVK 105 (375)
Q Consensus 26 ~l~~Lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~~~~~~~~~a~~~L~~L~~~~~~~r~~ 105 (375)
.+..+.+-|.++++..+..|++++.++... +.... .++.+.+++.++++.+|..|+.++..+...+++.-
T Consensus 80 ~~n~l~kdl~~~n~~~~~lAL~~l~~i~~~---~~~~~-----l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~~-- 149 (526)
T PF01602_consen 80 IINSLQKDLNSPNPYIRGLALRTLSNIRTP---EMAEP-----LIPDVIKLLSDPSPYVRKKAALALLKIYRKDPDLV-- 149 (526)
T ss_dssp HHHHHHHHHCSSSHHHHHHHHHHHHHH-SH---HHHHH-----HHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCCH--
T ss_pred HHHHHHHhhcCCCHHHHHHHHhhhhhhccc---chhhH-----HHHHHHHHhcCCchHHHHHHHHHHHHHhccCHHHH--
Confidence 455666777899999999999999998733 34333 37888999999999999999999999998665532
Q ss_pred HHHcCChHHHHHhhcCCChHHHHHHHHHHHHhhccCCChhH-HHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCCCC
Q 017249 106 IATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPA-IAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTCKEN 184 (375)
Q Consensus 106 i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~-i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~~L~~~~~~ 184 (375)
... .++.+.++|.+.++.++..|+.++..+ ...+ +.. -.-...+..|.+++...++-.+...+.+|..++.....
T Consensus 150 -~~~-~~~~l~~lL~d~~~~V~~~a~~~l~~i-~~~~-~~~~~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~ 225 (526)
T PF01602_consen 150 -EDE-LIPKLKQLLSDKDPSVVSAALSLLSEI-KCND-DSYKSLIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPE 225 (526)
T ss_dssp -HGG-HHHHHHHHTTHSSHHHHHHHHHHHHHH-HCTH-HHHTTHHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHH
T ss_pred -HHH-HHHHHhhhccCCcchhHHHHHHHHHHH-ccCc-chhhhhHHHHHHHhhhcccccchHHHHHHHHHHHhcccCChh
Confidence 222 588999999999999999999999999 1111 110 11234455666666788888899999998888754322
Q ss_pred chhhhhcCCcHHHHHHhhhcccchHHHHHHHHHHHHhhCChhhhHHHhhccCcHHHHHHHhccCChHHHHHHHHHHHHhc
Q 017249 185 SSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLC 264 (375)
Q Consensus 185 ~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~ 264 (375)
... ....++.+..++.+. ...+.-.|..++..+...+. +. ..+++.|+.++.+.++.++..++..|..++
T Consensus 226 ~~~--~~~~i~~l~~~l~s~--~~~V~~e~~~~i~~l~~~~~----~~--~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~ 295 (526)
T PF01602_consen 226 DAD--KNRIIEPLLNLLQSS--SPSVVYEAIRLIIKLSPSPE----LL--QKAINPLIKLLSSSDPNVRYIALDSLSQLA 295 (526)
T ss_dssp HHH--HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHSSSHH----HH--HHHHHHHHHHHTSSSHHHHHHHHHHHHHHC
T ss_pred hhh--HHHHHHHHHHHhhcc--ccHHHHHHHHHHHHhhcchH----HH--HhhHHHHHHHhhcccchhehhHHHHHHHhh
Confidence 210 034677777777765 34566778888887777666 22 367889999999888889999999999998
Q ss_pred ccCcHHHHHHHHHcCChHHHHHHhh-hCCHHHHHHHHHHHHHhhcCChhhhhhhhhHHHHHHHHhhcCCChHHHHHHHHH
Q 017249 265 QSCRDKYRQLILKEGAIPGLLRLTV-EGTFEAQERARTLLDLLRDTPQEKRLSSSVLEKIVYDIAARVDGADKAAETAKR 343 (375)
Q Consensus 265 ~~~~~~~~~~l~~~g~v~~L~~ll~-~~~~~~~~~A~~~L~~l~~~~~~~~~~~g~~~~l~~~l~~~~~g~~~~~~~a~~ 343 (375)
.... ..+ . .....+..+. +.++.++..+..+|..++...... .+++.|...+.. .+++..+..+..
T Consensus 296 ~~~~----~~v-~--~~~~~~~~l~~~~d~~Ir~~~l~lL~~l~~~~n~~----~Il~eL~~~l~~--~~d~~~~~~~i~ 362 (526)
T PF01602_consen 296 QSNP----PAV-F--NQSLILFFLLYDDDPSIRKKALDLLYKLANESNVK----EILDELLKYLSE--LSDPDFRRELIK 362 (526)
T ss_dssp CHCH----HHH-G--THHHHHHHHHCSSSHHHHHHHHHHHHHH--HHHHH----HHHHHHHHHHHH--C--HHHHHHHHH
T ss_pred cccc----hhh-h--hhhhhhheecCCCChhHHHHHHHHHhhcccccchh----hHHHHHHHHHHh--ccchhhhhhHHH
Confidence 7752 122 2 2233334444 788999999999999888755321 156666666531 223556666666
Q ss_pred HHHHHHHH
Q 017249 344 LLQDMVQR 351 (375)
Q Consensus 344 ~l~~l~~~ 351 (375)
.+..+...
T Consensus 363 ~I~~la~~ 370 (526)
T PF01602_consen 363 AIGDLAEK 370 (526)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhc
Confidence 66666543
No 47
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.04 E-value=6.5e-09 Score=101.25 Aligned_cols=221 Identities=16% Similarity=0.130 Sum_probs=176.4
Q ss_pred HHHhhHhHHHHHHHHhc-CCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhC-CCCHHHHHHHHHHHHHhh
Q 017249 19 WNQRKQALIEELSDKLI-NGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLV-SPNLDAIESSLLALLNLA 96 (375)
Q Consensus 19 ~~~~~~~~l~~Lv~~L~-s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~-~~~~~~~~~a~~~L~~L~ 96 (375)
..|-....+|.|+.+|+ ..+.++...|+++|.+++.-- |.....+++.++||.|++.|. -+..++-++++.+|-.|+
T Consensus 205 s~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evl-P~S~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iS 283 (1051)
T KOG0168|consen 205 SGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVL-PRSSAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKIS 283 (1051)
T ss_pred ccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhc-cchhheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHH
Confidence 34445668999999998 568999999999999999999 888889999999999998664 467899999999999999
Q ss_pred ccChhhHHHHHHcCChHHHHHhhcCCChHHHHHHHHHHHHhhccCC--ChhHHHhcCChHHHHHHhccCCHHHHHHHHHH
Q 017249 97 VRNERNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAP--NKPAIAASGAAPLLVQILHSGSVQGRVDAVTA 174 (375)
Q Consensus 97 ~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~--~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~ 174 (375)
... -..+.+.|++...+.+|.-.+..+|..|+.+..|+|..-. .-..+ ...+|.|..+|...+....+.++-+
T Consensus 284 R~H---~~AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi~sd~f~~v--~ealPlL~~lLs~~D~k~ies~~ic 358 (1051)
T KOG0168|consen 284 RRH---PKAILQAGALSAVLSYLDFFSIHAQRVALAIAANCCKSIRSDEFHFV--MEALPLLTPLLSYQDKKPIESVCIC 358 (1051)
T ss_pred hhc---cHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchHH--HHHHHHHHHHHhhccchhHHHHHHH
Confidence 753 3577899999999999988889999999999999987633 23333 3569999999999999999999999
Q ss_pred HHHhccC----CCCchhhhhcCCcHHHHHHhhhccc--chHHHHHHHHHHHHhhCC-hhhhHHHhhccCcHHHHHHHhc
Q 017249 175 LHYLSTC----KENSSPILDATAVPPLINLLKDCKK--YSKFAEKATALLEILSSS-EEGRIAITNSDGGILTLVETVE 246 (375)
Q Consensus 175 L~~L~~~----~~~~~~i~~~g~i~~Lv~ll~~~~~--~~~~~~~a~~~L~~l~~~-~~~~~~~~~~~g~v~~Lv~lL~ 246 (375)
+..++.. ++--+++...|.+....+++.-... ...+.-...+.|..+|.+ +.....+. ..++...|-.+|.
T Consensus 359 ~~ri~d~f~h~~~kLdql~s~dLi~~~~qLlsvt~t~Ls~~~~~~vIrmls~msS~~pl~~~tl~-k~~I~~~L~~il~ 436 (1051)
T KOG0168|consen 359 LTRIADGFQHGPDKLDQLCSHDLITNIQQLLSVTPTILSNGTYTGVIRMLSLMSSGSPLLFRTLL-KLDIADTLKRILQ 436 (1051)
T ss_pred HHHHHHhcccChHHHHHHhchhHHHHHHHHHhcCcccccccchhHHHHHHHHHccCChHHHHHHH-HhhHHHHHHHHHh
Confidence 9999854 2344566778999988888875421 113445567788888875 77777777 5677777777764
No 48
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.98 E-value=4.3e-08 Score=87.80 Aligned_cols=186 Identities=26% Similarity=0.278 Sum_probs=156.3
Q ss_pred CCCHHHHHHHHHHHHHhhccChhhHHHHHHcCChHHHHHhhcCCChHHHHHHHHHHHHhhccCC-ChhHHHhcCChHHHH
Q 017249 79 SPNLDAIESSLLALLNLAVRNERNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAP-NKPAIAASGAAPLLV 157 (375)
Q Consensus 79 ~~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~-~~~~i~~~~~l~~L~ 157 (375)
+.+.+-++.|+.-|..++. +-++-..++..|+..+++.++++.+..+|..|+++|...+.+.+ .+..+.+.|+++.|+
T Consensus 94 s~~le~ke~ald~Le~lve-~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll 172 (342)
T KOG2160|consen 94 SVDLEDKEDALDNLEELVE-DIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLL 172 (342)
T ss_pred cCCHHHHHHHHHHHHHHHH-hhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHH
Confidence 3467889999999999998 68899999999999999999999999999999999999998865 688888999999999
Q ss_pred HHhccCC-HHHHHHHHHHHHHhccCC-CCchhhhhcCCcHHHHHHhhhcccchHHHHHHHHHHHHhhCC-hhhhHHHhhc
Q 017249 158 QILHSGS-VQGRVDAVTALHYLSTCK-ENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSS-EEGRIAITNS 234 (375)
Q Consensus 158 ~lL~~~~-~~~~~~a~~~L~~L~~~~-~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~ 234 (375)
.++.+.+ ..++..|+.+++.|..+. .....+...++...|..++.+.+.+..++..++..+..+... ...+. ++..
T Consensus 173 ~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d-~~~~ 251 (342)
T KOG2160|consen 173 KILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDED-IASS 251 (342)
T ss_pred HHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhh-HHHH
Confidence 9998765 466799999999999764 567777788889999999999766778888899999988764 44444 4445
Q ss_pred cCcHHHHHHHhccCChHHHHHHHHHHHHhccc
Q 017249 235 DGGILTLVETVEDGSLVSTQHAVGALLSLCQS 266 (375)
Q Consensus 235 ~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~ 266 (375)
.++...+..+....+....+.++.++..+...
T Consensus 252 ~~f~~~~~~l~~~l~~~~~e~~l~~~l~~l~~ 283 (342)
T KOG2160|consen 252 LGFQRVLENLISSLDFEVNEAALTALLSLLSE 283 (342)
T ss_pred hhhhHHHHHHhhccchhhhHHHHHHHHHHHHH
Confidence 67777788888777888889999888877654
No 49
>PTZ00429 beta-adaptin; Provisional
Probab=98.97 E-value=1.1e-06 Score=88.61 Aligned_cols=261 Identities=12% Similarity=0.074 Sum_probs=172.6
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhccChhhHHH
Q 017249 26 LIEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIESSLLALLNLAVRNERNKVK 105 (375)
Q Consensus 26 ~l~~Lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~~~~~~~~~a~~~L~~L~~~~~~~r~~ 105 (375)
.++.++..+.+.+.+.|+-.-..+.+++... ++.. .+ ++..+.+-+.++++.+|-.|+++|+.+-. +..-..
T Consensus 69 LF~dVvk~~~S~d~elKKLvYLYL~~ya~~~-pela-lL----aINtl~KDl~d~Np~IRaLALRtLs~Ir~--~~i~e~ 140 (746)
T PTZ00429 69 LFVDVVKLAPSTDLELKKLVYLYVLSTARLQ-PEKA-LL----AVNTFLQDTTNSSPVVRALAVRTMMCIRV--SSVLEY 140 (746)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHcccC-hHHH-HH----HHHHHHHHcCCCCHHHHHHHHHHHHcCCc--HHHHHH
Confidence 3444445555555666655555565555544 2211 11 25666777778888888888888887764 323332
Q ss_pred HHHcCChHHHHHhhcCCChHHHHHHHHHHHHhhccCCChhHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCCCCc
Q 017249 106 IATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTCKENS 185 (375)
Q Consensus 106 i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~~L~~~~~~~ 185 (375)
.++.+.+.+.+.++.+|..|+-++.++...++ ..+...+.++.|.++|.+.++.++.+|+.+|..+.......
T Consensus 141 -----l~~~lkk~L~D~~pYVRKtAalai~Kly~~~p--elv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~ 213 (746)
T PTZ00429 141 -----TLEPLRRAVADPDPYVRKTAAMGLGKLFHDDM--QLFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEK 213 (746)
T ss_pred -----HHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCc--ccccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchh
Confidence 25577888889999999999999999976444 33445678899999999999999999999999997553322
Q ss_pred hhhhhcCCcHHHHHHhhhcccchHHHHHHHHHHHHhhCChhhhHHHhhccCcHHHHHHHhccCChHHHHHHHHHHHHhcc
Q 017249 186 SPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQ 265 (375)
Q Consensus 186 ~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~ 265 (375)
. -...+.+..|+..+.+.+++..+ ..+.+|... .|...... ...+..+...|.+.++.+.-.|+.++.++..
T Consensus 214 l-~l~~~~~~~Ll~~L~e~~EW~Qi--~IL~lL~~y--~P~~~~e~---~~il~~l~~~Lq~~N~AVVl~Aik~il~l~~ 285 (746)
T PTZ00429 214 I-ESSNEWVNRLVYHLPECNEWGQL--YILELLAAQ--RPSDKESA---ETLLTRVLPRMSHQNPAVVMGAIKVVANLAS 285 (746)
T ss_pred h-HHHHHHHHHHHHHhhcCChHHHH--HHHHHHHhc--CCCCcHHH---HHHHHHHHHHhcCCCHHHHHHHHHHHHHhcC
Confidence 1 12345667777777766555443 345555332 23322222 2467788888999999999999999999986
Q ss_pred cCcHHHHHHHHHcCChHHHHHHhhhCCHHHHHHHHHHHHHhhcCCh
Q 017249 266 SCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDTPQ 311 (375)
Q Consensus 266 ~~~~~~~~~l~~~g~v~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~ 311 (375)
..+++....+. .....+|+.+ .++++++|.-+...+..+....+
T Consensus 286 ~~~~~~~~~~~-~rl~~pLv~L-~ss~~eiqyvaLr~I~~i~~~~P 329 (746)
T PTZ00429 286 RCSQELIERCT-VRVNTALLTL-SRRDAETQYIVCKNIHALLVIFP 329 (746)
T ss_pred cCCHHHHHHHH-HHHHHHHHHh-hCCCccHHHHHHHHHHHHHHHCH
Confidence 54333222211 1233666666 45778999999987777766554
No 50
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.92 E-value=3.2e-06 Score=85.87 Aligned_cols=312 Identities=16% Similarity=0.155 Sum_probs=204.2
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHhhCChhhH---HHHHhc--CChHHHHHhhCCCCHHHHHHHHHHHHHhhccChh
Q 017249 27 IEELSDKLINGDLETKIEAARDIRKVVKKSSLKTR---SEFAAA--GVVQPLVLMLVSPNLDAIESSLLALLNLAVRNER 101 (375)
Q Consensus 27 l~~Lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~---~~~~~~--g~v~~Lv~~L~~~~~~~~~~a~~~L~~L~~~~~~ 101 (375)
.+.+.+.+.+++..++..|++++..++... +.+. +.+... +++..+-+.+..++.+.-..++.+|..++...+.
T Consensus 161 ~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~-~~~~~~~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~pk 239 (1075)
T KOG2171|consen 161 LRLFSQTMTDPSSPVRVAAVRALGAFAEYL-ENNKSEVDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALIELLESEPK 239 (1075)
T ss_pred HHHHHHhccCCcchHHHHHHHHHHHHHHHh-ccchHHHHHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhchH
Confidence 334444555555459999999999998776 3233 333322 3344444555667778888999999999876665
Q ss_pred hHHHHHHcCChHHHHHhhcCC--ChHHHHHHHHHHHHhhccCCChhHH---HhcCChHHHHHHhccC-------------
Q 017249 102 NKVKIATAGAIPPLVELLKFQ--NGTLRELAAAAILTLSAAAPNKPAI---AASGAAPLLVQILHSG------------- 163 (375)
Q Consensus 102 ~r~~i~~~g~i~~Lv~lL~~~--~~~~~~~a~~~L~~Ls~~~~~~~~i---~~~~~l~~L~~lL~~~------------- 163 (375)
.-..... .++..-+.+.++. +..+|..|+.+|..++...+..... .....++.++.++...
T Consensus 240 ~l~~~l~-~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~d 318 (1075)
T KOG2171|consen 240 LLRPHLS-QIIQFSLEIAKNKELENSIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNEDDLD 318 (1075)
T ss_pred HHHHHHH-HHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhccccccc
Confidence 4333322 1344445555554 7889999999999999873321111 1233455555554221
Q ss_pred --C-HHHHHHHHHHHHHhccCCCCchhhhhcCCcHHHHHHhhhcccchHHHHHHHHHHHHhhC-ChhhhHHHhhccCcHH
Q 017249 164 --S-VQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSS-SEEGRIAITNSDGGIL 239 (375)
Q Consensus 164 --~-~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~-~~~~~~~~~~~~g~v~ 239 (375)
+ ......|..+|-.|+.+=..+. +-.-.++.+-.++.+.+ + .-+.+++.+|+.++. +++.-...+ ..+++
T Consensus 319 ed~~~~~~~~A~~~lDrlA~~L~g~~--v~p~~~~~l~~~l~S~~-w-~~R~AaL~Als~i~EGc~~~m~~~l--~~Il~ 392 (1075)
T KOG2171|consen 319 EDDEETPYRAAEQALDRLALHLGGKQ--VLPPLFEALEAMLQSTE-W-KERHAALLALSVIAEGCSDVMIGNL--PKILP 392 (1075)
T ss_pred cccccCcHHHHHHHHHHHHhcCChhh--ehHHHHHHHHHHhcCCC-H-HHHHHHHHHHHHHHcccHHHHHHHH--HHHHH
Confidence 0 1235566777777765411111 11124556666666653 3 557888888888875 344444444 36778
Q ss_pred HHHHHhccCChHHHHHHHHHHHHhcccCcHHHHHHHHHcCChHHHHHHhhh-CCHHHHHHHHHHHHHhhcCChhhhhh--
Q 017249 240 TLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVE-GTFEAQERARTLLDLLRDTPQEKRLS-- 316 (375)
Q Consensus 240 ~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~g~v~~L~~ll~~-~~~~~~~~A~~~L~~l~~~~~~~~~~-- 316 (375)
.++..|.++.+.+|..|+.++.-++.+=.++.. .-...-+.+.|+..+.+ ++++++.+|+.+|-++.+..+...+.
T Consensus 393 ~Vl~~l~DphprVr~AA~naigQ~stdl~p~iq-k~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pY 471 (1075)
T KOG2171|consen 393 IVLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQ-KKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPY 471 (1075)
T ss_pred HHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHH-HHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHH
Confidence 888889999999999999999999987655432 23345677788887775 57999999999999999888664443
Q ss_pred -hhhHHHHHHHHhhcCCChHHHHHHHHHHHHHHH
Q 017249 317 -SSVLEKIVYDIAARVDGADKAAETAKRLLQDMV 349 (375)
Q Consensus 317 -~g~~~~l~~~l~~~~~g~~~~~~~a~~~l~~l~ 349 (375)
.+++++++..|. .++++..++.+..++...-
T Consensus 472 Ld~lm~~~l~~L~--~~~~~~v~e~vvtaIasvA 503 (1075)
T KOG2171|consen 472 LDGLMEKKLLLLL--QSSKPYVQEQAVTAIASVA 503 (1075)
T ss_pred HHHHHHHHHHHHh--cCCchhHHHHHHHHHHHHH
Confidence 567776666665 6788999999988887664
No 51
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.85 E-value=1.6e-06 Score=75.94 Aligned_cols=273 Identities=16% Similarity=0.178 Sum_probs=189.5
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHhhCChhhHHHHH-hcCChHHHHHhhCCCCHHHHHHHHHHHHHhhccChhhHHH
Q 017249 27 IEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFA-AAGVVQPLVLMLVSPNLDAIESSLLALLNLAVRNERNKVK 105 (375)
Q Consensus 27 l~~Lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~-~~g~v~~Lv~~L~~~~~~~~~~a~~~L~~L~~~~~~~r~~ 105 (375)
+..+++++.+.+|.++..|+..+..+.... .+.... +.-.++.+.+++....+ ...|+.+|.|++. ++..|..
T Consensus 5 l~elv~ll~~~sP~v~~~AV~~l~~lt~~~---~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq-~~~l~~~ 78 (353)
T KOG2973|consen 5 LVELVELLHSLSPPVRKAAVEHLLGLTGRG---LQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQ-KEELRKK 78 (353)
T ss_pred HHHHHHHhccCChHHHHHHHHHHhhccccc---hhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHh-hHHHHHH
Confidence 467899999999999999999888887653 122111 12457888888887665 7788999999998 5778888
Q ss_pred HHHcCChHHHHHhhcCCChHHHHHHHHHHHHhhccCCChhHHH---h----cCChHHHHHHhccC-C-HHHHHHHHHHHH
Q 017249 106 IATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIA---A----SGAAPLLVQILHSG-S-VQGRVDAVTALH 176 (375)
Q Consensus 106 i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~---~----~~~l~~L~~lL~~~-~-~~~~~~a~~~L~ 176 (375)
+... .+..++..+.++....-...+.+|.||+..+.....+. . .|........++.+ + ..-..+.+-.+.
T Consensus 79 ll~~-~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~vf~ 157 (353)
T KOG2973|consen 79 LLQD-LLKVLMDMLTDPQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAPVFA 157 (353)
T ss_pred HHHH-HHHHHHHHhcCcccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccchhHHHHHHH
Confidence 8777 78888888888755666788899999998877543332 2 34444444455443 2 133667778899
Q ss_pred HhccCCCCchhhhhcCCcH--HHHHHhhhcccchHH-HHHHHHHHHHhhCChhhhHHHhhcc-CcHHHHH----------
Q 017249 177 YLSTCKENSSPILDATAVP--PLINLLKDCKKYSKF-AEKATALLEILSSSEEGRIAITNSD-GGILTLV---------- 242 (375)
Q Consensus 177 ~L~~~~~~~~~i~~~g~i~--~Lv~ll~~~~~~~~~-~~~a~~~L~~l~~~~~~~~~~~~~~-g~v~~Lv---------- 242 (375)
||+.....+..+.....++ .++.+ .+. +..+ +....+.|.|.|........++.+. ...+.|+
T Consensus 158 nls~~~~gR~l~~~~k~~p~~kll~f-t~~--~s~vRr~GvagtlkN~cFd~~~h~~lL~e~~~lLp~iLlPlagpee~s 234 (353)
T KOG2973|consen 158 NLSQFEAGRKLLLEPKRFPDQKLLPF-TSE--DSQVRRGGVAGTLKNCCFDAKLHEVLLDESINLLPAILLPLAGPEELS 234 (353)
T ss_pred HHhhhhhhhhHhcchhhhhHhhhhcc-ccc--chhhhccchHHHHHhhhccchhHHHHhcchHHHHHHHHhhcCCccccC
Confidence 9998877777766654322 22222 221 2233 3456788999999888887777421 1223222
Q ss_pred -----------HHhc-----cCChHHHHHHHHHHHHhcccCcHHHHHHHHHcCChHHHHHHhh-hCCHHHHHHHHHHHHH
Q 017249 243 -----------ETVE-----DGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTV-EGTFEAQERARTLLDL 305 (375)
Q Consensus 243 -----------~lL~-----~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~g~v~~L~~ll~-~~~~~~~~~A~~~L~~ 305 (375)
++|. .+++.++..-+.+|.-||... .+|+.+.+.|+.+.|-.+-. ..++++++.+-.+...
T Consensus 235 EEdm~~LP~eLQyLp~dKeRepdpdIrk~llEai~lLcaT~--~GRe~lR~kgvYpilRElhk~e~ded~~~ace~vvq~ 312 (353)
T KOG2973|consen 235 EEDMAKLPVELQYLPEDKEREPDPDIRKMLLEALLLLCATR--AGREVLRSKGVYPILRELHKWEEDEDIREACEQVVQM 312 (353)
T ss_pred HHHHhcCCHhhhcCCccccCCCChHHHHHHHHHHHHHHhhh--HhHHHHHhcCchHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 2231 246789999999999999876 66888888888887777655 5689999999888888
Q ss_pred hhcCCh
Q 017249 306 LRDTPQ 311 (375)
Q Consensus 306 l~~~~~ 311 (375)
+-+..+
T Consensus 313 Lv~~e~ 318 (353)
T KOG2973|consen 313 LVRLEP 318 (353)
T ss_pred HHhccc
Confidence 877554
No 52
>PTZ00429 beta-adaptin; Provisional
Probab=98.80 E-value=8.8e-06 Score=82.15 Aligned_cols=308 Identities=13% Similarity=0.064 Sum_probs=208.0
Q ss_pred hHhHHHHHHHHhcCCCHHHHHHHHHHHHHH-HhhCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhccChh
Q 017249 23 KQALIEELSDKLINGDLETKIEAARDIRKV-VKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIESSLLALLNLAVRNER 101 (375)
Q Consensus 23 ~~~~l~~Lv~~L~s~~~~~~~~a~~~l~~l-~~~~~~~~~~~~~~~g~v~~Lv~~L~~~~~~~~~~a~~~L~~L~~~~~~ 101 (375)
+.|-+..|-..|++.+...+..+++.+... +.+. +.- .+.+.+++++.+++.++++-..-.|.+++..+++
T Consensus 30 ~kge~~ELr~~L~s~~~~~kk~alKkvIa~mt~G~--DvS------~LF~dVvk~~~S~d~elKKLvYLYL~~ya~~~pe 101 (746)
T PTZ00429 30 RRGEGAELQNDLNGTDSYRKKAAVKRIIANMTMGR--DVS------YLFVDVVKLAPSTDLELKKLVYLYVLSTARLQPE 101 (746)
T ss_pred ccchHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCC--Cch------HHHHHHHHHhCCCCHHHHHHHHHHHHHHcccChH
Confidence 345567777888888888888888855444 4444 222 2466778899999999999999999999876555
Q ss_pred hHHHHHHcCChHHHHHhhcCCChHHHHHHHHHHHHhhccCCChhHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccC
Q 017249 102 NKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTC 181 (375)
Q Consensus 102 ~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~~L~~~ 181 (375)
.--.. +..|.+=+.++++.+|-.|++++.++-.. . ...-.++.+.+.+.+.++.+++.|+.++..+-..
T Consensus 102 lalLa-----INtl~KDl~d~Np~IRaLALRtLs~Ir~~-----~-i~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~ 170 (746)
T PTZ00429 102 KALLA-----VNTFLQDTTNSSPVVRALAVRTMMCIRVS-----S-VLEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHD 170 (746)
T ss_pred HHHHH-----HHHHHHHcCCCCHHHHHHHHHHHHcCCcH-----H-HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhh
Confidence 43332 45777888889999999999988887331 1 1233466778888999999999999999998654
Q ss_pred CCCchhhhhcCCcHHHHHHhhhcccchHHHHHHHHHHHHhhCChhhhHHHhhccCcHHHHHHHhccCChHHHHHHHHHHH
Q 017249 182 KENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALL 261 (375)
Q Consensus 182 ~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~ 261 (375)
++ ..+...+.++.|.+++.+. ++.+..+|+.+|..+.......-.+ ..+.+..|+..|...++..+-..+.+|.
T Consensus 171 ~p--elv~~~~~~~~L~~LL~D~--dp~Vv~nAl~aL~eI~~~~~~~l~l--~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~ 244 (746)
T PTZ00429 171 DM--QLFYQQDFKKDLVELLNDN--NPVVASNAAAIVCEVNDYGSEKIES--SNEWVNRLVYHLPECNEWGQLYILELLA 244 (746)
T ss_pred Cc--ccccccchHHHHHHHhcCC--CccHHHHHHHHHHHHHHhCchhhHH--HHHHHHHHHHHhhcCChHHHHHHHHHHH
Confidence 33 2334567888999988765 4568888999999887543222222 2466778888888778888888888886
Q ss_pred HhcccCcHHHHHHHHHcCChHHHHHHhhhCCHHHHHHHHHHHHHhhcCChhhhhhh---hhHHHHHHHHhhcCCChHHHH
Q 017249 262 SLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDTPQEKRLSS---SVLEKIVYDIAARVDGADKAA 338 (375)
Q Consensus 262 ~l~~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~~~~~~~---g~~~~l~~~l~~~~~g~~~~~ 338 (375)
.....+..+ ...++..+...+.+.++.|.-.|+.++-++........+.. -+..+++.++ .+.+..+
T Consensus 245 ~y~P~~~~e------~~~il~~l~~~Lq~~N~AVVl~Aik~il~l~~~~~~~~~~~~~~rl~~pLv~L~----ss~~eiq 314 (746)
T PTZ00429 245 AQRPSDKES------AETLLTRVLPRMSHQNPAVVMGAIKVVANLASRCSQELIERCTVRVNTALLTLS----RRDAETQ 314 (746)
T ss_pred hcCCCCcHH------HHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHHHHHhh----CCCccHH
Confidence 543322111 13566777777888899999999998888876532222211 1334555432 2346677
Q ss_pred HHHHHHHHHHHHH---HHHHhHHHHHHHhh
Q 017249 339 ETAKRLLQDMVQR---SMELSMTRIQQRAA 365 (375)
Q Consensus 339 ~~a~~~l~~l~~~---s~~~~~~~~~~~~~ 365 (375)
=-+-..+..+.+. -...++..|+-|.+
T Consensus 315 yvaLr~I~~i~~~~P~lf~~~~~~Ff~~~~ 344 (746)
T PTZ00429 315 YIVCKNIHALLVIFPNLLRTNLDSFYVRYS 344 (746)
T ss_pred HHHHHHHHHHHHHCHHHHHHHHHhhhcccC
Confidence 6666666666544 22334555544443
No 53
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.69 E-value=3.2e-05 Score=75.71 Aligned_cols=284 Identities=14% Similarity=0.078 Sum_probs=205.3
Q ss_pred HhHHHHHHHHhc--CCCHHHHHHHHHHHHHHHhhCCh----------------hhHHHHHhc-CChHHHHHhhCCCCHHH
Q 017249 24 QALIEELSDKLI--NGDLETKIEAARDIRKVVKKSSL----------------KTRSEFAAA-GVVQPLVLMLVSPNLDA 84 (375)
Q Consensus 24 ~~~l~~Lv~~L~--s~~~~~~~~a~~~l~~l~~~~~~----------------~~~~~~~~~-g~v~~Lv~~L~~~~~~~ 84 (375)
..++++|+.-|+ ..|++....++.++..+..++ + ...+.|++. +.|..|+..+...|..+
T Consensus 60 a~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~d-d~~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~V 138 (970)
T KOG0946|consen 60 AQGMKPLIQVLQRDYMDPEIIKYALDTLLILTSHD-DSPEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHV 138 (970)
T ss_pred HcccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcC-cchhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhh
Confidence 446889999998 458999999999999998766 2 122345544 78999999999999999
Q ss_pred HHHHHHHHHHhhc-cChhhHHHHHH-cCChHHHHHhhcCCChHHHHHHHHHHHHhhccCCChh-HHHhcCChHHHHHHhc
Q 017249 85 IESSLLALLNLAV-RNERNKVKIAT-AGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKP-AIAASGAAPLLVQILH 161 (375)
Q Consensus 85 ~~~a~~~L~~L~~-~~~~~r~~i~~-~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~-~i~~~~~l~~L~~lL~ 161 (375)
|..++..|.++-. ...+.+..+.. .-+|..|+.+|.+....+|-.++..|..|..+..... .++-.+++..|..++.
T Consensus 139 R~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~DsrE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIe 218 (970)
T KOG0946|consen 139 RLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRDSREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIE 218 (970)
T ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhhhhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHH
Confidence 9999999998664 34566777666 7899999999999999999999999999999877644 4456789999999997
Q ss_pred cC---C-HHHHHHHHHHHHHhccC-CCCchhhhhcCCcHHHHHHhhhcc-------cch--HH--HHHHHHHHHHhhC-C
Q 017249 162 SG---S-VQGRVDAVTALHYLSTC-KENSSPILDATAVPPLINLLKDCK-------KYS--KF--AEKATALLEILSS-S 224 (375)
Q Consensus 162 ~~---~-~~~~~~a~~~L~~L~~~-~~~~~~i~~~g~i~~Lv~ll~~~~-------~~~--~~--~~~a~~~L~~l~~-~ 224 (375)
.+ + .-+...|+..|.||-.+ ..|...+.+.+.+|.|.++|.... .|. .+ ...++.+++.+.. +
T Consensus 219 eEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~~~i~rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~ 298 (970)
T KOG0946|consen 219 EEGGLDGGIVVEDCLILLNNLLKNNISNQNFFREGSYIPRLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPG 298 (970)
T ss_pred hcCCCCCcchHHHHHHHHHHHHhhCcchhhHHhccccHHHHHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCCC
Confidence 54 2 35788999999999976 478888899999999998886421 111 11 1234555555542 1
Q ss_pred ------hhhhHHHhhccCcHHHHHHHhccC--ChHHHHHHHHHHHHhcccCcHHHHHHHHHcC----------ChHHHHH
Q 017249 225 ------EEGRIAITNSDGGILTLVETVEDG--SLVSTQHAVGALLSLCQSCRDKYRQLILKEG----------AIPGLLR 286 (375)
Q Consensus 225 ------~~~~~~~~~~~g~v~~Lv~lL~~~--~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~g----------~v~~L~~ 286 (375)
+.+++.+. ..+++..|..++.++ ...++..++.+++++..++ ...+..+.+.. ++-.++.
T Consensus 299 Nt~~~~~q~qk~l~-ss~ll~~Lc~il~~~~vp~dIltesiitvAevVRgn-~~nQ~~F~~v~~p~~~~Pr~sivvllms 376 (970)
T KOG0946|consen 299 NTSSITHQNQKALV-SSHLLDVLCTILMHPGVPADILTESIITVAEVVRGN-ARNQDEFADVTAPSIPNPRPSIVVLLMS 376 (970)
T ss_pred CcHHHHHHHHHHHH-HcchHHHHHHHHcCCCCcHhHHHHHHHHHHHHHHhc-hHHHHHHhhccCCCCCCCccchhHHHHH
Confidence 23445555 678899999888765 4678899999999998887 45566665421 1122334
Q ss_pred HhhhCC-HHHHHHHHHHHHHhhcCC
Q 017249 287 LTVEGT-FEAQERARTLLDLLRDTP 310 (375)
Q Consensus 287 ll~~~~-~~~~~~A~~~L~~l~~~~ 310 (375)
+..+.. +..|-+...++..+--.+
T Consensus 377 m~ne~q~~~lRcAv~ycf~s~l~dN 401 (970)
T KOG0946|consen 377 MFNEKQPFSLRCAVLYCFRSYLYDN 401 (970)
T ss_pred HHhccCCchHHHHHHHHHHHHHhcc
Confidence 444444 444444445777665444
No 54
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=98.68 E-value=4.2e-07 Score=69.84 Aligned_cols=135 Identities=16% Similarity=0.157 Sum_probs=115.9
Q ss_pred HhhHhHHHHHHHHhc-CCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhccC
Q 017249 21 QRKQALIEELSDKLI-NGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIESSLLALLNLAVRN 99 (375)
Q Consensus 21 ~~~~~~l~~Lv~~L~-s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~~~~~~~~~a~~~L~~L~~~~ 99 (375)
+...+.+..||...+ ..+.+.|.....-|.|++.++ -+-..+.+.++++.++..|+.++..+++.++..|+|+|- +
T Consensus 12 i~Rl~Ylq~LV~efq~tt~~eakeqv~ANLANFAYDP--~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~-d 88 (173)
T KOG4646|consen 12 IDRLEYLQHLVDEFQTTTNIEAKEQVTANLANFAYDP--INYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCL-D 88 (173)
T ss_pred CcHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccCc--chHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhcc-C
Confidence 556788999998887 678899999999999999998 888999999999999999999999999999999999999 6
Q ss_pred hhhHHHHHHcCChHHHHHhhcCCChHHHHHHHHHHHHhhccCC-ChhHHHhcCChHHHHH
Q 017249 100 ERNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAP-NKPAIAASGAAPLLVQ 158 (375)
Q Consensus 100 ~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~-~~~~i~~~~~l~~L~~ 158 (375)
+.+...|.+.+++|.++..+.++...+...++.++..|+.... .++.+....++..+.+
T Consensus 89 ~~n~~~I~ea~g~plii~~lssp~e~tv~sa~~~l~~l~~~~Rt~r~ell~p~Vv~~v~r 148 (173)
T KOG4646|consen 89 KTNAKFIREALGLPLIIFVLSSPPEITVHSAALFLQLLEFGERTERDELLSPAVVRTVQR 148 (173)
T ss_pred hHHHHHHHHhcCCceEEeecCCChHHHHHHHHHHHHHhcCcccchhHHhccHHHHHHHHH
Confidence 8899999999999999999999999888899999998887654 3555554444444433
No 55
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=98.66 E-value=3.1e-05 Score=72.23 Aligned_cols=319 Identities=15% Similarity=0.152 Sum_probs=208.3
Q ss_pred HHHHhhHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCCC--CHHHHHHHHHHHHHh
Q 017249 18 AWNQRKQALIEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSP--NLDAIESSLLALLNL 95 (375)
Q Consensus 18 ~~~~~~~~~l~~Lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~~--~~~~~~~a~~~L~~L 95 (375)
+....-...++.+..++-+++.+++..+.++++.+..+. .....+.+.+.--.++.-|..+ ...-+++|++.++.+
T Consensus 18 ~~~~~~~~~~~~i~~~lL~~~~~vraa~yRilRy~i~d~--~~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~ 95 (371)
T PF14664_consen 18 KYDLVLSFFGERIQCMLLSDSKEVRAAGYRILRYLISDE--ESLQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAF 95 (371)
T ss_pred hhhhhHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHcCH--HHHHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHH
Confidence 334444556666666565666999999999999999887 7788888888666666666543 345688999999988
Q ss_pred hccChhhHHHHHHcCChHHHHHhhcCCChHHHHHHHHHHHHhhccCCChhHHHhcCChHHHHHHhccCCHHHHHHHHHHH
Q 017249 96 AVRNERNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHSGSVQGRVDAVTAL 175 (375)
Q Consensus 96 ~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L 175 (375)
..-. .. ......|++..++.+.++.++..+..++.+|+.++..++ ..+...||+..|++.+.++........+.++
T Consensus 96 l~~~-~~-~~~~~~~vvralvaiae~~~D~lr~~cletL~El~l~~P--~lv~~~gG~~~L~~~l~d~~~~~~~~l~~~l 171 (371)
T PF14664_consen 96 LEIK-KG-PKEIPRGVVRALVAIAEHEDDRLRRICLETLCELALLNP--ELVAECGGIRVLLRALIDGSFSISESLLDTL 171 (371)
T ss_pred HHhc-CC-cccCCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCH--HHHHHcCCHHHHHHHHHhccHhHHHHHHHHH
Confidence 7531 11 122356788999999999999999999999999988543 5667889999999999887777888899999
Q ss_pred HHhccCCCCchhhhhcCCcHHHHHHhhhc-----ccch--HHHHHHHHHHHHhhCChhhhHHHhhc-cCcHHHHHHHhcc
Q 017249 176 HYLSTCKENSSPILDATAVPPLINLLKDC-----KKYS--KFAEKATALLEILSSSEEGRIAITNS-DGGILTLVETVED 247 (375)
Q Consensus 176 ~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~-----~~~~--~~~~~a~~~L~~l~~~~~~~~~~~~~-~g~v~~Lv~lL~~ 247 (375)
..+-..+..+..+...--++.++.-+.+. .... .....+..++..+-.+=.+--.+..+ ..++..|+..|..
T Consensus 172 L~lLd~p~tR~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~~~~lksLv~~L~~ 251 (371)
T PF14664_consen 172 LYLLDSPRTRKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMNDFRGLKSLVDSLRL 251 (371)
T ss_pred HHHhCCcchhhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCCchHHHHHHHHHcC
Confidence 99999988887766544455555555443 1111 13344455555444433332222222 2688999999999
Q ss_pred CChHHHHHHHHHHHHhcccCcHHH------HHHHHHcCCh---HHHHHHhh-----------hCCHHHHHHHHHHHHHhh
Q 017249 248 GSLVSTQHAVGALLSLCQSCRDKY------RQLILKEGAI---PGLLRLTV-----------EGTFEAQERARTLLDLLR 307 (375)
Q Consensus 248 ~~~~~~~~a~~~L~~l~~~~~~~~------~~~l~~~g~v---~~L~~ll~-----------~~~~~~~~~A~~~L~~l~ 307 (375)
+++.+++..+..+..+-.-..+.- ...+...|-+ ..+..-.. ....-+..+-+-+|.
T Consensus 252 p~~~ir~~Ildll~dllrik~p~w~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~~~~~~~~~l~~~y~aLll~--- 328 (371)
T PF14664_consen 252 PNPEIRKAILDLLFDLLRIKPPSWTESFLAGRRLTTYGRFQDTWNLSSGFAEAKSILPHRSSKRPNLVNHYLALLLA--- 328 (371)
T ss_pred CCHHHHHHHHHHHHHHHCCCCCCcccchhhcccccccccccchhhhcccccccccccCccccccccHHHHHHHHHHH---
Confidence 999999999999988765332210 1111112221 11110000 001111111222222
Q ss_pred cCChhhhhhhhhHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHH
Q 017249 308 DTPQEKRLSSSVLEKIVYDIAARVDGADKAAETAKRLLQDMVQRS 352 (375)
Q Consensus 308 ~~~~~~~~~~g~~~~l~~~l~~~~~g~~~~~~~a~~~l~~l~~~s 352 (375)
-.++.|.+++|+..+. ...++....||.-+|..+.+.+
T Consensus 329 -----ili~~gL~~~L~~li~--~~~d~~l~~KAtlLL~elL~la 366 (371)
T PF14664_consen 329 -----ILIEAGLLEALVELIE--SSEDSSLSRKATLLLGELLHLA 366 (371)
T ss_pred -----HHHHcChHHHHHHHHh--cCCCchHHHHHHHHHHHHHHHH
Confidence 2567789999998876 3324788899999998887543
No 56
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=98.63 E-value=3.7e-05 Score=70.34 Aligned_cols=316 Identities=14% Similarity=0.088 Sum_probs=215.1
Q ss_pred hHHHHHHHHhc-CCCHHHHHHHHHHHHHHHhhCChhhHHHHHh-------cCChHHHHHhhCCCCHHHHHHHHHHHHHhh
Q 017249 25 ALIEELSDKLI-NGDLETKIEAARDIRKVVKKSSLKTRSEFAA-------AGVVQPLVLMLVSPNLDAIESSLLALLNLA 96 (375)
Q Consensus 25 ~~l~~Lv~~L~-s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~-------~g~v~~Lv~~L~~~~~~~~~~a~~~L~~L~ 96 (375)
..+..++.+++ ...++...-.+..+..+...+ ..+..+.. .-.....+.+|...+.-+...+.+++..++
T Consensus 65 ~~v~~fi~LlS~~~kdd~v~yvL~li~DmLs~d--~sr~~lf~~~a~~~k~~~~~~fl~ll~r~d~~iv~~~~~Ils~la 142 (442)
T KOG2759|consen 65 QYVKTFINLLSHIDKDDTVQYVLTLIDDMLSED--RSRVDLFHDYAHKLKRTEWLSFLNLLNRQDTFIVEMSFRILSKLA 142 (442)
T ss_pred HHHHHHHHHhchhhhHHHHHHHHHHHHHHHhhC--chHHHHHHHHHHhhhccchHHHHHHHhcCChHHHHHHHHHHHHHH
Confidence 56788888887 456667777888888888777 34443321 123677899999999888888999999988
Q ss_pred ccChhhHHHHHHcC-ChHHHHHhhcC-CChHHHHHHHHHHHHhhccCCChhHHHhcCChHHHHHHhccC--CHHHHHHHH
Q 017249 97 VRNERNKVKIATAG-AIPPLVELLKF-QNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHSG--SVQGRVDAV 172 (375)
Q Consensus 97 ~~~~~~r~~i~~~g-~i~~Lv~lL~~-~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~l~~L~~lL~~~--~~~~~~~a~ 172 (375)
.... ++....+.. ....|-..+.+ .+.+....+++||-.+...++.+..+....++..++..+.+. +..+++..+
T Consensus 143 ~~g~-~~~~~~e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~~eyR~~~v~adg~~~l~~~l~s~~~~~QlQYqsi 221 (442)
T KOG2759|consen 143 CFGN-CKMELSELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLRVDEYRYAFVIADGVSLLIRILASTKCGFQLQYQSI 221 (442)
T ss_pred Hhcc-ccccchHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhcCcchhheeeecCcchhhHHHHhccCcchhHHHHHH
Confidence 6322 221111111 12234444544 467777889999999999999999999888999999998433 578899999
Q ss_pred HHHHHhccCCCCchhhhhcCCcHHHHHHhhhcccchHHHHHHHHHHHHhhCCh-------hhhHHHhhccCcHHHHHHHh
Q 017249 173 TALHYLSTCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSE-------EGRIAITNSDGGILTLVETV 245 (375)
Q Consensus 173 ~~L~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~~~-------~~~~~~~~~~g~v~~Lv~lL 245 (375)
.++|-|+.++...+.+...+.++.|..+++++. .+++.+-++.++.|+.... +...+++. +.++.-++.|
T Consensus 222 fciWlLtFn~~~ae~~~~~~li~~L~~Ivk~~~-KEKV~Rivlai~~Nll~k~~~~~~~k~~~~~mv~--~~v~k~l~~L 298 (442)
T KOG2759|consen 222 FCIWLLTFNPHAAEKLKRFDLIQDLSDIVKEST-KEKVTRIVLAIFRNLLDKGPDRETKKDIASQMVL--CKVLKTLQSL 298 (442)
T ss_pred HHHHHhhcCHHHHHHHhhccHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHh--cCchHHHHHH
Confidence 999999999888888877899999999999876 4467788999999998765 33345552 4555555555
Q ss_pred cc---CChHHHHH-------HHHHHHHhccc--------------Cc--------HHHHHHHHHc--CChHHHHHHhhhC
Q 017249 246 ED---GSLVSTQH-------AVGALLSLCQS--------------CR--------DKYRQLILKE--GAIPGLLRLTVEG 291 (375)
Q Consensus 246 ~~---~~~~~~~~-------a~~~L~~l~~~--------------~~--------~~~~~~l~~~--g~v~~L~~ll~~~ 291 (375)
.. .++.+... --...-.|+.. ++ .++...+-+. .++..|+.+++..
T Consensus 299 ~~rkysDEDL~~di~~L~e~L~~svq~LsSFDeY~sEl~sG~L~WSP~Hk~e~FW~eNa~rlnennyellkiL~~lLe~s 378 (442)
T KOG2759|consen 299 EERKYSDEDLVDDIEFLTEKLKNSVQDLSSFDEYKSELRSGRLEWSPVHKSEKFWRENADRLNENNYELLKILIKLLETS 378 (442)
T ss_pred HhcCCCcHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhCCcCCCccccccchHHHhHHHHhhccHHHHHHHHHHHhcC
Confidence 42 22222211 11111112211 11 1234444443 3788899988854
Q ss_pred -CHHHHHHHHHHHHHhhcCChh---hhhhhhhHHHHHHHHhhcCCChHHHHHHHHHHHHHHH
Q 017249 292 -TFEAQERARTLLDLLRDTPQE---KRLSSSVLEKIVYDIAARVDGADKAAETAKRLLQDMV 349 (375)
Q Consensus 292 -~~~~~~~A~~~L~~l~~~~~~---~~~~~g~~~~l~~~l~~~~~g~~~~~~~a~~~l~~l~ 349 (375)
+|.+---|+.=+...-++.|+ .+.+.|+=+.++..|. +.| ++.+=.|-.+++.+.
T Consensus 379 ~Dp~iL~VAc~DIge~Vr~yP~gk~vv~k~ggKe~vM~Lln-h~d--~~Vry~ALlavQ~lm 437 (442)
T KOG2759|consen 379 NDPIILCVACHDIGEYVRHYPEGKAVVEKYGGKERVMNLLN-HED--PEVRYHALLAVQKLM 437 (442)
T ss_pred CCCceeehhhhhHHHHHHhCchHhHHHHHhchHHHHHHHhc-CCC--chHHHHHHHHHHHHH
Confidence 588877788866666665544 4567888888988774 333 888888888777664
No 57
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=98.61 E-value=3.3e-07 Score=70.46 Aligned_cols=127 Identities=22% Similarity=0.219 Sum_probs=109.5
Q ss_pred CChHHHHH-hhCCCCHHHHHHHHHHHHHhhccChhhHHHHHHcCChHHHHHhhcCCChHHHHHHHHHHHHhhccCCChhH
Q 017249 68 GVVQPLVL-MLVSPNLDAIESSLLALLNLAVRNERNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPA 146 (375)
Q Consensus 68 g~v~~Lv~-~L~~~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~ 146 (375)
+.+..||. +-...+.+.+++...-|.|.+. +|.|...+.+..++..++..|..++..+.+.++..|+|++.+..++..
T Consensus 16 ~Ylq~LV~efq~tt~~eakeqv~ANLANFAY-DP~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~d~~n~~~ 94 (173)
T KOG4646|consen 16 EYLQHLVDEFQTTTNIEAKEQVTANLANFAY-DPINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCLDKTNAKF 94 (173)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhcc-CcchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhccChHHHHH
Confidence 44566665 4456788999999999999999 689999999999999999999999999999999999999999999999
Q ss_pred HHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCC-CCchhhhhcCCcH
Q 017249 147 IAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTCK-ENSSPILDATAVP 195 (375)
Q Consensus 147 i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~~L~~~~-~~~~~i~~~g~i~ 195 (375)
|.+.++++.++..+.++...+..+++.++..|+... ..+..+....+++
T Consensus 95 I~ea~g~plii~~lssp~e~tv~sa~~~l~~l~~~~Rt~r~ell~p~Vv~ 144 (173)
T KOG4646|consen 95 IREALGLPLIIFVLSSPPEITVHSAALFLQLLEFGERTERDELLSPAVVR 144 (173)
T ss_pred HHHhcCCceEEeecCCChHHHHHHHHHHHHHhcCcccchhHHhccHHHHH
Confidence 999999999999999999999999999999999764 4455554433333
No 58
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=98.60 E-value=2.9e-05 Score=73.35 Aligned_cols=242 Identities=17% Similarity=0.009 Sum_probs=149.6
Q ss_pred hHHHHHHHHhc-CCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhccChhhH
Q 017249 25 ALIEELSDKLI-NGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIESSLLALLNLAVRNERNK 103 (375)
Q Consensus 25 ~~l~~Lv~~L~-s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~~~~~~~~~a~~~L~~L~~~~~~~r 103 (375)
..++.++..|. .++.++...++..+. .... + .++..|+..|.+.++.++..++.+|+.+-.
T Consensus 54 ~a~~~L~~aL~~d~~~ev~~~aa~al~--~~~~-~---------~~~~~L~~~L~d~~~~vr~aaa~ALg~i~~------ 115 (410)
T TIGR02270 54 AATELLVSALAEADEPGRVACAALALL--AQED-A---------LDLRSVLAVLQAGPEGLCAGIQAALGWLGG------ 115 (410)
T ss_pred hHHHHHHHHHhhCCChhHHHHHHHHHh--ccCC-h---------HHHHHHHHHhcCCCHHHHHHHHHHHhcCCc------
Confidence 45667777774 455666555444442 1222 0 127778888888888888888888876543
Q ss_pred HHHHHcCChHHHHHhhcCCChHHHHHHHHHHHHhhccCCChhHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCCC
Q 017249 104 VKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTCKE 183 (375)
Q Consensus 104 ~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~~L~~~~~ 183 (375)
.+..+.|+.+|++.++.++..++.++... .....+.+..+|++.++.++..|+.+|..+-
T Consensus 116 -----~~a~~~L~~~L~~~~p~vR~aal~al~~r-----------~~~~~~~L~~~L~d~d~~Vra~A~raLG~l~---- 175 (410)
T TIGR02270 116 -----RQAEPWLEPLLAASEPPGRAIGLAALGAH-----------RHDPGPALEAALTHEDALVRAAALRALGELP---- 175 (410)
T ss_pred -----hHHHHHHHHHhcCCChHHHHHHHHHHHhh-----------ccChHHHHHHHhcCCCHHHHHHHHHHHHhhc----
Confidence 23456777888878888887776555551 1234567888888888888888888887763
Q ss_pred CchhhhhcCCcHHHHHHhhhcccchHHHHHHHHHHHHhhCChhhhHHHhhccCcHHHHHHHhccCChHHHHHHHHHHHHh
Q 017249 184 NSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSL 263 (375)
Q Consensus 184 ~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l 263 (375)
....++.|...+.+. ++.++..|...+..+- ....+..+..+...........+..++...
T Consensus 176 ------~~~a~~~L~~al~d~--~~~VR~aA~~al~~lG-----------~~~A~~~l~~~~~~~g~~~~~~l~~~lal~ 236 (410)
T TIGR02270 176 ------RRLSESTLRLYLRDS--DPEVRFAALEAGLLAG-----------SRLAWGVCRRFQVLEGGPHRQRLLVLLAVA 236 (410)
T ss_pred ------cccchHHHHHHHcCC--CHHHHHHHHHHHHHcC-----------CHhHHHHHHHHHhccCccHHHHHHHHHHhC
Confidence 234556666666554 4567777777665332 223344455433333333333333333322
Q ss_pred cccCcHHHHHHHHHcCChHHHHHHhhhCCHHHHHHHHHHHHHhhcCChhhhhhhhhHHHHHHHHhhcCCChHHHHHHHHH
Q 017249 264 CQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDTPQEKRLSSSVLEKIVYDIAARVDGADKAAETAKR 343 (375)
Q Consensus 264 ~~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~~~~~~~g~~~~l~~~l~~~~~g~~~~~~~a~~ 343 (375)
.. ...++.|..++++. .++..++.+|..+.... .++.|+..+. + +..++.|..
T Consensus 237 --~~----------~~a~~~L~~ll~d~--~vr~~a~~AlG~lg~p~--------av~~L~~~l~---d--~~~aR~A~e 289 (410)
T TIGR02270 237 --GG----------PDAQAWLRELLQAA--ATRREALRAVGLVGDVE--------AAPWCLEAMR---E--PPWARLAGE 289 (410)
T ss_pred --Cc----------hhHHHHHHHHhcCh--hhHHHHHHHHHHcCCcc--------hHHHHHHHhc---C--cHHHHHHHH
Confidence 11 14567777777654 48889999998887766 6777776653 3 348888888
Q ss_pred HHHHHHH
Q 017249 344 LLQDMVQ 350 (375)
Q Consensus 344 ~l~~l~~ 350 (375)
.++.+..
T Consensus 290 A~~~ItG 296 (410)
T TIGR02270 290 AFSLITG 296 (410)
T ss_pred HHHHhhC
Confidence 8888874
No 59
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=98.55 E-value=2e-05 Score=79.20 Aligned_cols=325 Identities=16% Similarity=0.092 Sum_probs=215.5
Q ss_pred HhHHHHHHHHhc---CC------CHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCC----------C---C
Q 017249 24 QALIEELSDKLI---NG------DLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVS----------P---N 81 (375)
Q Consensus 24 ~~~l~~Lv~~L~---s~------~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~----------~---~ 81 (375)
..+.|.|+..+. ++ +..-...|+.-|.++.-..|.-|.+.+++.||++.|...++. + .
T Consensus 1374 YAGYPMLi~tiT~e~~D~~lfSk~~~PLL~AA~ELa~~T~~~SaLNaEELrRdnGle~L~tafSRCv~Vvt~~s~p~dma 1453 (2235)
T KOG1789|consen 1374 YAGYPMLIKTITLEAKDEALFSKGGGPLLSAAIELANYTLISSALNAEELRRDNGLEALVTAFSRCVPVVTMSSLPDDMA 1453 (2235)
T ss_pred cCcchhhhhhhhhcccchhhhcCCCCcchHHHHHHHHHHHhhhhcCHHHHhhcccHHHHHHHHhhhheeeccccCCCcch
Confidence 345677776654 11 111234466666666655545677888999999999988852 1 2
Q ss_pred HHHHHHHHHHHHHhhccChhhHHHHHH-cCChHHHHHhhcCC-ChHHHHHHHHHHHHhhccCCChhHHHhcCChHHHHHH
Q 017249 82 LDAIESSLLALLNLAVRNERNKVKIAT-AGAIPPLVELLKFQ-NGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQI 159 (375)
Q Consensus 82 ~~~~~~a~~~L~~L~~~~~~~r~~i~~-~g~i~~Lv~lL~~~-~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~l~~L~~l 159 (375)
..+....++++.-.+. .+.+|..+.+ ...|..|+.++.-+ -|.+...++.++..++.+..-+..+...|++-.|+.+
T Consensus 1454 v~vc~~v~~c~SVaaQ-FE~cR~~~~EmPSiI~Dl~r~l~f~~vPr~~~aa~qci~~~aVd~~LQ~~LfqAG~LWYlLp~ 1532 (2235)
T KOG1789|consen 1454 VRVCIHVCDCFSVAAQ-FEACRQRLMEMPSIIGDLTRLLQFSNLPRLSTAAAQCIRAMAVDTLLQFQLFQAGVLWYLLPH 1532 (2235)
T ss_pred hhHHHHHHHHHHHHHH-HHHHHHHHhhhhHHHHHHHHHHHhccccHHHHHHHHHHHHHhhhHHHHHHHHHhhhHHHHHHH
Confidence 4567788888888887 6889999998 67889999988655 6778889999999999888888888889998888888
Q ss_pred hccCC-------------H-------HHHHHHHHHHHHhccC-------CCCc--hhhhhc------------CCcHHHH
Q 017249 160 LHSGS-------------V-------QGRVDAVTALHYLSTC-------KENS--SPILDA------------TAVPPLI 198 (375)
Q Consensus 160 L~~~~-------------~-------~~~~~a~~~L~~L~~~-------~~~~--~~i~~~------------g~i~~Lv 198 (375)
|.+.+ . ..-..++.+|..|+.. ++|. ...... .....++
T Consensus 1533 Lf~YDyTlEESg~q~Se~~n~Q~~aNslA~~s~~ALSRL~G~~AdE~~TP~N~T~~~sL~alLTPyiAr~Lk~e~~~~iL 1612 (2235)
T KOG1789|consen 1533 LFHYDYTLEESGVQHSEDSNKQSLANSLARSSCEALSRLAGFRADEENTPDNDTVQASLRALLTPYIARCLKLETNDMVL 1612 (2235)
T ss_pred HhcccccccccCccccccchHHHHHHHHHHHHHHHHHHHhccccccccCCCChhHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 74311 0 1223345555555431 1111 111111 1111122
Q ss_pred HHhhhcccch----------------------------------------------------------------------
Q 017249 199 NLLKDCKKYS---------------------------------------------------------------------- 208 (375)
Q Consensus 199 ~ll~~~~~~~---------------------------------------------------------------------- 208 (375)
+.|.+..+.+
T Consensus 1613 k~LNsN~E~Py~IWNn~TRaELLeFve~Qracq~~~G~~D~~yg~eF~Ys~h~KEliVG~ifirVYNeqPtf~l~ePk~F 1692 (2235)
T KOG1789|consen 1613 KTLNSNMENPYMIWNNGTRAELLEFVERQRACQTSNGPTDELYGAEFEYSVHKKELIVGDIFIRVYNEQPTFALHEPKKF 1692 (2235)
T ss_pred HHhhcCCCCceeeecCccHHHHHHHHHHHHhccCCCCCchhhccceeeehhhccceeeeeEEEEeecCCCchhhcCcHHH
Confidence 2221110000
Q ss_pred -----------------------------------------------HHHHHHHHHHHHhhC-ChhhhHHHhh---ccCc
Q 017249 209 -----------------------------------------------KFAEKATALLEILSS-SEEGRIAITN---SDGG 237 (375)
Q Consensus 209 -----------------------------------------------~~~~~a~~~L~~l~~-~~~~~~~~~~---~~g~ 237 (375)
.-.+.++.+|.|+.. +|+-...+-. .-|.
T Consensus 1693 a~~LlDyI~S~~~~l~~~~~~~~~s~d~ie~~~~V~sE~HgD~lPs~~~v~m~LtAL~Nli~~nPdlasvfgSe~~lig~ 1772 (2235)
T KOG1789|consen 1693 AIDLLDYIKSHSAELTGAPKPKAISDDLIEIDWGVGSEAHGDSLPTETKVLMTLTALANLVSANPDLASVFGSEILLIGN 1772 (2235)
T ss_pred HHHHHHHHHHhHHHhcCCCCccccccchhhhhcccchhhhcCCCChHHHHHHHHHHHHHHHhhCcchhhhccchhhhhcc
Confidence 001567788888765 3422111110 1266
Q ss_pred HHHHHHHhc-cCChHHHHHHHHHHHHhcccCcHHHHHHHHHcCChHHHHHHhhhCCHHHHHHHHHHHHHhhcCCh--hhh
Q 017249 238 ILTLVETVE-DGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDTPQ--EKR 314 (375)
Q Consensus 238 v~~Lv~lL~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~--~~~ 314 (375)
++.+..+|. ++.+.++..|+.++..+..+. ++...+.+.|.+..|+.++++. |..|+.+..+|..|+.... .++
T Consensus 1773 F~l~~~~lr~~~~~~iq~LaL~Vi~~~Tan~--~Cv~~~a~~~vL~~LL~lLHS~-PS~R~~vL~vLYAL~S~~~i~keA 1849 (2235)
T KOG1789|consen 1773 FPLLITYLRCRKHPKLQILALQVILLATANK--ECVTDLATCNVLTTLLTLLHSQ-PSMRARVLDVLYALSSNGQIGKEA 1849 (2235)
T ss_pred cHHHHHHHHHcCCchHHHHHHHHHHHHhccc--HHHHHHHhhhHHHHHHHHHhcC-hHHHHHHHHHHHHHhcCcHHHHHH
Confidence 777777776 456789999999998877765 6788899999999999998854 8899999999999998884 367
Q ss_pred hhhhhHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHH
Q 017249 315 LSSSVLEKIVYDIAARVDGADKAAETAKRLLQDMVQRSME 354 (375)
Q Consensus 315 ~~~g~~~~l~~~l~~~~~g~~~~~~~a~~~l~~l~~~s~~ 354 (375)
.+.|.+.-++..+- ...+++.+..|++++..|..+-+.
T Consensus 1850 ~~hg~l~yil~~~c--~~~~~QqRAqaAeLlaKl~Adkl~ 1887 (2235)
T KOG1789|consen 1850 LEHGGLMYILSILC--LTNSDQQRAQAAELLAKLQADKLT 1887 (2235)
T ss_pred HhcCchhhhhHHHh--ccCcHHHHHHHHHHHHHhhhcccc
Confidence 88887777766543 344588889999999998765433
No 60
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.50 E-value=5.1e-06 Score=79.65 Aligned_cols=248 Identities=13% Similarity=0.125 Sum_probs=158.0
Q ss_pred ChHHHHHhhCCCCHHHHHHHHHHHHHhhccChhhHHHHHH----cCChHHHHHhhcCCChHHHHHHHHHHHHhhccCCCh
Q 017249 69 VVQPLVLMLVSPNLDAIESSLLALLNLAVRNERNKVKIAT----AGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNK 144 (375)
Q Consensus 69 ~v~~Lv~~L~~~~~~~~~~a~~~L~~L~~~~~~~r~~i~~----~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~ 144 (375)
++|.|.++|.+++...++-|..+|..++.++.+.-+.-.. .-.+|.++++.++++|.+|..|+.|+..........
T Consensus 129 lLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~~qa 208 (885)
T KOG2023|consen 129 LLPQLCELLDSPDYNTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQTQA 208 (885)
T ss_pred HHHHHHHHhcCCcccccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHhCCChhHHHHHHhhhhheeecCcHH
Confidence 6789999999999999999999999999877654333111 234899999999999999999999998876544322
Q ss_pred hHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCCCCchhhhhcCCcHHHHHHhhhcccchHHHHHHHHHHHHhhCC
Q 017249 145 PAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSS 224 (375)
Q Consensus 145 ~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~~ 224 (375)
-...-...++.+..+-.+++++++.+.|.++..|......+-.---.++++.++..-.+. ++.+...|+.....++..
T Consensus 209 l~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~dkl~phl~~IveyML~~tqd~--dE~VALEACEFwla~aeq 286 (885)
T KOG2023|consen 209 LYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVRPDKLVPHLDNIVEYMLQRTQDV--DENVALEACEFWLALAEQ 286 (885)
T ss_pred HHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHHhcccchHHHHHHHHHHccCc--chhHHHHHHHHHHHHhcC
Confidence 222334677778888888899999999999999986532211111124555555555554 345667788888888888
Q ss_pred hhhhHHHhhc-cCcHHHHHHHh----------ccCCh-------------------------------------------
Q 017249 225 EEGRIAITNS-DGGILTLVETV----------EDGSL------------------------------------------- 250 (375)
Q Consensus 225 ~~~~~~~~~~-~g~v~~Lv~lL----------~~~~~------------------------------------------- 250 (375)
+-.+..+... ...+|.|++-+ .+..+
T Consensus 287 pi~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD~~ 366 (885)
T KOG2023|consen 287 PICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDDAF 366 (885)
T ss_pred cCcHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCCchhhhccchhhhchhccCcccccccccccccccccccc
Confidence 7444433310 13344444322 10000
Q ss_pred ---HHHHHHHHHHHHhcccCcHHHHHHHHHcC----ChHHHHHHhhhCCHHHHHHHHHHHHHhhcCChhhhhhh--hhHH
Q 017249 251 ---VSTQHAVGALLSLCQSCRDKYRQLILKEG----AIPGLLRLTVEGTFEAQERARTLLDLLRDTPQEKRLSS--SVLE 321 (375)
Q Consensus 251 ---~~~~~a~~~L~~l~~~~~~~~~~~l~~~g----~v~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~~~~~~~--g~~~ 321 (375)
.+|.+.+.+|..|+. ++... ++|.|.+.+.+..-.+||.++-+|..+++..-+-++.. ..++
T Consensus 367 ~dWNLRkCSAAaLDVLan---------vf~~elL~~l~PlLk~~L~~~~W~vrEagvLAlGAIAEGcM~g~~p~LpeLip 437 (885)
T KOG2023|consen 367 SDWNLRKCSAAALDVLAN---------VFGDELLPILLPLLKEHLSSEEWKVREAGVLALGAIAEGCMQGFVPHLPELIP 437 (885)
T ss_pred ccccHhhccHHHHHHHHH---------hhHHHHHHHHHHHHHHHcCcchhhhhhhhHHHHHHHHHHHhhhcccchHHHHH
Confidence 133333333333322 12223 34555555667788999999999999998774433321 2556
Q ss_pred HHHHHH
Q 017249 322 KIVYDI 327 (375)
Q Consensus 322 ~l~~~l 327 (375)
-++..|
T Consensus 438 ~l~~~L 443 (885)
T KOG2023|consen 438 FLLSLL 443 (885)
T ss_pred HHHHHh
Confidence 555555
No 61
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=98.47 E-value=2.8e-05 Score=73.45 Aligned_cols=212 Identities=15% Similarity=0.025 Sum_probs=150.6
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhccChhhHHH
Q 017249 26 LIEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIESSLLALLNLAVRNERNKVK 105 (375)
Q Consensus 26 ~l~~Lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~~~~~~~~~a~~~L~~L~~~~~~~r~~ 105 (375)
.+..|+..|.++++.++..++..|..+-.. +..+.|+.+|++.++.++..++.++.....
T Consensus 87 ~~~~L~~~L~d~~~~vr~aaa~ALg~i~~~------------~a~~~L~~~L~~~~p~vR~aal~al~~r~~-------- 146 (410)
T TIGR02270 87 DLRSVLAVLQAGPEGLCAGIQAALGWLGGR------------QAEPWLEPLLAASEPPGRAIGLAALGAHRH-------- 146 (410)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHhcCCch------------HHHHHHHHHhcCCChHHHHHHHHHHHhhcc--------
Confidence 478899999888888888888888754222 347889999999999999888877776222
Q ss_pred HHHcCChHHHHHhhcCCChHHHHHHHHHHHHhhccCCChhHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCCCCc
Q 017249 106 IATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTCKENS 185 (375)
Q Consensus 106 i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~~L~~~~~~~ 185 (375)
...+.+..+|++.++.++..|+.+|..+- ....++.|...+.+.++.++..|++++..+-.
T Consensus 147 ----~~~~~L~~~L~d~d~~Vra~A~raLG~l~----------~~~a~~~L~~al~d~~~~VR~aA~~al~~lG~----- 207 (410)
T TIGR02270 147 ----DPGPALEAALTHEDALVRAAALRALGELP----------RRLSESTLRLYLRDSDPEVRFAALEAGLLAGS----- 207 (410)
T ss_pred ----ChHHHHHHHhcCCCHHHHHHHHHHHHhhc----------cccchHHHHHHHcCCCHHHHHHHHHHHHHcCC-----
Confidence 23568999999999999999999999873 35667888899999999999999999865522
Q ss_pred hhhhhcCCcHHHHHHhhhcccchHHHHHHHHHHHHhhCChhhhHHHhhccCcHHHHHHHhccCChHHHHHHHHHHHHhcc
Q 017249 186 SPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQ 265 (375)
Q Consensus 186 ~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~ 265 (375)
..++..+..+....... ....+..++... .....++.|..+++++. ++..++.++..+-.
T Consensus 208 -----~~A~~~l~~~~~~~g~~--~~~~l~~~lal~-----------~~~~a~~~L~~ll~d~~--vr~~a~~AlG~lg~ 267 (410)
T TIGR02270 208 -----RLAWGVCRRFQVLEGGP--HRQRLLVLLAVA-----------GGPDAQAWLRELLQAAA--TRREALRAVGLVGD 267 (410)
T ss_pred -----HhHHHHHHHHHhccCcc--HHHHHHHHHHhC-----------CchhHHHHHHHHhcChh--hHHHHHHHHHHcCC
Confidence 23444555533332211 222233333322 12356778888887644 78888888876532
Q ss_pred cCcHHHHHHHHHcCChHHHHHHhhhCCHHHHHHHHHHHHHhhcCC
Q 017249 266 SCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDTP 310 (375)
Q Consensus 266 ~~~~~~~~~l~~~g~v~~L~~ll~~~~~~~~~~A~~~L~~l~~~~ 310 (375)
...++.|+..+.+. .++..|..++..++.-.
T Consensus 268 ------------p~av~~L~~~l~d~--~~aR~A~eA~~~ItG~~ 298 (410)
T TIGR02270 268 ------------VEAAPWCLEAMREP--PWARLAGEAFSLITGMD 298 (410)
T ss_pred ------------cchHHHHHHHhcCc--HHHHHHHHHHHHhhCCC
Confidence 34677777776543 38888999999988643
No 62
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=98.46 E-value=1.6e-05 Score=73.52 Aligned_cols=264 Identities=16% Similarity=0.129 Sum_probs=176.6
Q ss_pred hHHHHHhcCChHHHHHhhCCCCH--HHHHHHHHHHHHhhccChhhHHHHHHcCChHHHHHhhcCC-ChHHHHHHHHHHHH
Q 017249 60 TRSEFAAAGVVQPLVLMLVSPNL--DAIESSLLALLNLAVRNERNKVKIATAGAIPPLVELLKFQ-NGTLRELAAAAILT 136 (375)
Q Consensus 60 ~~~~~~~~g~v~~Lv~~L~~~~~--~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~-~~~~~~~a~~~L~~ 136 (375)
..+.+...|+++.|+.++.+++. .++.++.+.|..+.. .+|++.+...| +..++.+-+.. .++.....+.+|.+
T Consensus 172 LCD~iR~~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~--aeN~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~ 248 (832)
T KOG3678|consen 172 LCDAIRLDGGLDLLLRMFQAPNLETSVRVEAARLLEQILV--AENRDRVARIG-LGVILNLAKEREPVELARSVAGILEH 248 (832)
T ss_pred hhhHhhccchHHHHHHHHhCCchhHHHHHHHHHHHHHHHh--hhhhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHHH
Confidence 45667778999999999999875 458999999999885 57999999877 66666665444 67788888999999
Q ss_pred hhccCC-ChhHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccC--CCCchhhhhcCCcHHHHHHhhhcccchHHHHH
Q 017249 137 LSAAAP-NKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTC--KENSSPILDATAVPPLINLLKDCKKYSKFAEK 213 (375)
Q Consensus 137 Ls~~~~-~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~~L~~~--~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~ 213 (375)
+..+.+ ....++..|+++.++-.++..++.+...++.+|.|++-. ...+..+++..+.+-|.-+..+. ++.++..
T Consensus 249 mFKHSeet~~~Lvaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~sk--Del~R~~ 326 (832)
T KOG3678|consen 249 MFKHSEETCQRLVAAGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSK--DELLRLH 326 (832)
T ss_pred HhhhhHHHHHHHHhhcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcch--HHHHHHH
Confidence 998865 466677899999999999999999999999999999854 46677788777777676666554 4467777
Q ss_pred HHHHHHHhhCChhhhHHHhhccCcHHHHHHHhccCChHHHHHHHHHHHHhcccCcHHHHHHHH--HcCChHHHHHHhhhC
Q 017249 214 ATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLIL--KEGAIPGLLRLTVEG 291 (375)
Q Consensus 214 a~~~L~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~--~~g~v~~L~~ll~~~ 291 (375)
|+-+.+.|+.+.+.-..+- ..|.+..+-.++.+.++. .++.+. .+.-. -...++.|+-++++.
T Consensus 327 AClAV~vlat~KE~E~~Vr-kS~TlaLVEPlva~~DP~----------~FARD~----hd~aQG~~~d~LqRLvPlLdS~ 391 (832)
T KOG3678|consen 327 ACLAVAVLATNKEVEREVR-KSGTLALVEPLVASLDPG----------RFARDA----HDYAQGRGPDDLQRLVPLLDSN 391 (832)
T ss_pred HHHHHhhhhhhhhhhHHHh-hccchhhhhhhhhccCcc----------hhhhhh----hhhhccCChHHHHHhhhhhhcc
Confidence 8888888887766655555 456554444444433332 111111 01110 123567777777755
Q ss_pred CHHHHHHHHHHHHHhhc----CChh--hhh-hhhhHHHHHHHHhhcCCChHHHHHHHHHHHHHH
Q 017249 292 TFEAQERARTLLDLLRD----TPQE--KRL-SSSVLEKIVYDIAARVDGADKAAETAKRLLQDM 348 (375)
Q Consensus 292 ~~~~~~~A~~~L~~l~~----~~~~--~~~-~~g~~~~l~~~l~~~~~g~~~~~~~a~~~l~~l 348 (375)
.-+.|--++ ...+.+ +.+. +++ +.|.+++|- .+.++.|+ -+..-|.++|..+
T Consensus 392 R~EAq~i~A--F~l~~EAaIKs~Q~K~kVFseIGAIQaLK-evaSS~d~--vaakfAseALtvi 450 (832)
T KOG3678|consen 392 RLEAQCIGA--FYLCAEAAIKSLQGKTKVFSEIGAIQALK-EVASSPDE--VAAKFASEALTVI 450 (832)
T ss_pred hhhhhhhHH--HHHHHHHHHHHhccchhHHHHHHHHHHHH-HHhcCchH--HHHHHHHHHHHHh
Confidence 444443333 222222 1122 344 578999884 56654554 4445566666665
No 63
>PF05536 Neurochondrin: Neurochondrin
Probab=98.46 E-value=1.4e-05 Score=78.50 Aligned_cols=235 Identities=17% Similarity=0.117 Sum_probs=161.9
Q ss_pred ChHHHHHhhCCCCHHHHHHHHHHHHHhhccChh---hHHHHHHcCChHHHHHhhcCC-------ChHHHHHHHHHHHHhh
Q 017249 69 VVQPLVLMLVSPNLDAIESSLLALLNLAVRNER---NKVKIATAGAIPPLVELLKFQ-------NGTLRELAAAAILTLS 138 (375)
Q Consensus 69 ~v~~Lv~~L~~~~~~~~~~a~~~L~~L~~~~~~---~r~~i~~~g~i~~Lv~lL~~~-------~~~~~~~a~~~L~~Ls 138 (375)
.++..+.+|+..+.+-+-.++..+.++...++. .++.+.+.=+.+.|-++|+++ ....+.-|+.+|..++
T Consensus 6 ~l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f~ 85 (543)
T PF05536_consen 6 SLEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAFC 85 (543)
T ss_pred HHHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHc
Confidence 367788999988866788888899999986553 344678887788999999873 3567888999999999
Q ss_pred ccCCChhHHHhcCChHHHHHHhccCCH-HHHHHHHHHHHHhccCCCCchhhhhcCCcHHHHHHhhhcccchHHHHHHHHH
Q 017249 139 AAAPNKPAIAASGAAPLLVQILHSGSV-QGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATAL 217 (375)
Q Consensus 139 ~~~~~~~~i~~~~~l~~L~~lL~~~~~-~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~ 217 (375)
..++....-.-.+-||.|++++.+.+. .+...++.+|..++..++....+++.|+++.|..++.+.. ...+.++.+
T Consensus 86 ~~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~G~~aLl~~g~v~~L~ei~~~~~---~~~E~Al~l 162 (543)
T PF05536_consen 86 RDPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIASSPEGAKALLESGAVPALCEIIPNQS---FQMEIALNL 162 (543)
T ss_pred CChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcHhHHHHHhcCCHHHHHHHHHhCc---chHHHHHHH
Confidence 976643222223569999999988876 8999999999999999999999999999999999998843 346888999
Q ss_pred HHHhhCChhhhHHHhhcc----CcHHHHHHHhccCChHHHHHHHHHHHHhcccCcHHHHHHH----HHcCChHHHHHHhh
Q 017249 218 LEILSSSEEGRIAITNSD----GGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLI----LKEGAIPGLLRLTV 289 (375)
Q Consensus 218 L~~l~~~~~~~~~~~~~~----g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l----~~~g~v~~L~~ll~ 289 (375)
+.+++...... ..-... ..+..+-..+.......+-..+..|..+-...+....... +-..+...+..++.
T Consensus 163 L~~Lls~~~~~-~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~gl~~iL~ 241 (543)
T PF05536_consen 163 LLNLLSRLGQK-SWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLRKGLRDILQ 241 (543)
T ss_pred HHHHHHhcchh-hhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChhhhHHHHHHHHHHHHh
Confidence 98887643311 111111 3344455555555556677888888888766521001111 22233444445555
Q ss_pred hC-CHHHHHHHHHHHHHhh
Q 017249 290 EG-TFEAQERARTLLDLLR 307 (375)
Q Consensus 290 ~~-~~~~~~~A~~~L~~l~ 307 (375)
+. .+.-|..|..+...+.
T Consensus 242 sr~~~~~R~~al~Laa~Ll 260 (543)
T PF05536_consen 242 SRLTPSQRDPALNLAASLL 260 (543)
T ss_pred cCCCHHHHHHHHHHHHHHH
Confidence 54 4555655655555554
No 64
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=98.45 E-value=3.9e-05 Score=68.05 Aligned_cols=277 Identities=16% Similarity=0.100 Sum_probs=190.8
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHhhCChhh----HHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhccChhh
Q 017249 27 IEELSDKLINGDLETKIEAARDIRKVVKKSSLKT----RSEFAAAGVVQPLVLMLVSPNLDAIESSLLALLNLAVRNERN 102 (375)
Q Consensus 27 l~~Lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~----~~~~~~~g~v~~Lv~~L~~~~~~~~~~a~~~L~~L~~~~~~~ 102 (375)
.+.|-.-|..++..++..+++.+..+..+. +.+ ...++..|.++.++.++...+.++-..|...+..++. .+..
T Consensus 84 mpdLQrGLiaddasVKiLackqigcilEdc-DtnaVseillvvNaeilklildcIggeddeVAkAAiesikrial-fpaa 161 (524)
T KOG4413|consen 84 MPDLQRGLIADDASVKILACKQIGCILEDC-DTNAVSEILLVVNAEILKLILDCIGGEDDEVAKAAIESIKRIAL-FPAA 161 (524)
T ss_pred hHHHHhcccCCcchhhhhhHhhhhHHHhcC-chhhHHHHHHHhhhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHh-cHHH
Confidence 334444444678889999999999998877 422 2234577999999999999999999999999999998 6777
Q ss_pred HHHHHHcCChHHHHHh--hcCCChHHHHHHHHHHHHhhcc-CCChhHHHhcCChHHHHHHhcc-CCHHHHHHHHHHHHHh
Q 017249 103 KVKIATAGAIPPLVEL--LKFQNGTLRELAAAAILTLSAA-APNKPAIAASGAAPLLVQILHS-GSVQGRVDAVTALHYL 178 (375)
Q Consensus 103 r~~i~~~g~i~~Lv~l--L~~~~~~~~~~a~~~L~~Ls~~-~~~~~~i~~~~~l~~L~~lL~~-~~~~~~~~a~~~L~~L 178 (375)
-..+.+......+-.. --.-+.-+|......+..++.- ++.....-..|.++.|..-|+. .+.-++..++.....|
T Consensus 162 leaiFeSellDdlhlrnlaakcndiaRvRVleLIieifSiSpesaneckkSGLldlLeaElkGteDtLVianciElvteL 241 (524)
T KOG4413|consen 162 LEAIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAELKGTEDTLVIANCIELVTEL 241 (524)
T ss_pred HHHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHHH
Confidence 7777777666554322 2223555666777777776544 3344555567888888877776 5677888999999999
Q ss_pred ccCCCCchhhhhcCCcHHHHHHhhhcccchHHHHHHH----HHHHHhhCCh---hh-hHHHhhccCcHHHHHHHhccCCh
Q 017249 179 STCKENSSPILDATAVPPLINLLKDCKKYSKFAEKAT----ALLEILSSSE---EG-RIAITNSDGGILTLVETVEDGSL 250 (375)
Q Consensus 179 ~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~----~~L~~l~~~~---~~-~~~~~~~~g~v~~Lv~lL~~~~~ 250 (375)
+.....++.+.+.|.++.+.+++...+.++--.-.++ +.+++.+... +. ++... -+++..+..+...++
T Consensus 242 aeteHgreflaQeglIdlicnIIsGadsdPfekfralmgfgkffgkeaimdvseeaiceali---iaidgsfEmiEmnDp 318 (524)
T KOG4413|consen 242 AETEHGREFLAQEGLIDLICNIISGADSDPFEKFRALMGFGKFFGKEAIMDVSEEAICEALI---IAIDGSFEMIEMNDP 318 (524)
T ss_pred HHHhhhhhhcchhhHHHHHHHHhhCCCCCcHHHHHHHHHHHHHhcchHHhhcCHHHHHHHHH---HHHHhhHHhhhcCCc
Confidence 9887788888889999999999986543332111122 3333333211 11 11111 245555666777889
Q ss_pred HHHHHHHHHHHHhcccCcHHHHHHHHHcC--ChHHHHH-HhhhCCHHHHHHHHHHHHHhhcCC
Q 017249 251 VSTQHAVGALLSLCQSCRDKYRQLILKEG--AIPGLLR-LTVEGTFEAQERARTLLDLLRDTP 310 (375)
Q Consensus 251 ~~~~~a~~~L~~l~~~~~~~~~~~l~~~g--~v~~L~~-ll~~~~~~~~~~A~~~L~~l~~~~ 310 (375)
..++.|+.+++-+.+.. +..+.+.+.| ..++|+- ..+.....-++.+..+|.+++..-
T Consensus 319 daieaAiDalGilGSnt--eGadlllkTgppaaehllarafdqnahakqeaaihaLaaIagel 379 (524)
T KOG4413|consen 319 DAIEAAIDALGILGSNT--EGADLLLKTGPPAAEHLLARAFDQNAHAKQEAAIHALAAIAGEL 379 (524)
T ss_pred hHHHHHHHHHHhccCCc--chhHHHhccCChHHHHHHHHHhcccccchHHHHHHHHHHhhccc
Confidence 99999999999998776 6677787766 4555555 444333455677788999887543
No 65
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.45 E-value=4.5e-05 Score=74.45 Aligned_cols=318 Identities=12% Similarity=0.108 Sum_probs=201.1
Q ss_pred HHHHHHHHhcCCCH-HHHHHHHHHHHHHHhhCChhhHHHHHh-cCChHHHHHhhCC--CCHHHHHHHHHHHHHhhccChh
Q 017249 26 LIEELSDKLINGDL-ETKIEAARDIRKVVKKSSLKTRSEFAA-AGVVQPLVLMLVS--PNLDAIESSLLALLNLAVRNER 101 (375)
Q Consensus 26 ~l~~Lv~~L~s~~~-~~~~~a~~~l~~l~~~~~~~~~~~~~~-~g~v~~Lv~~L~~--~~~~~~~~a~~~L~~L~~~~~~ 101 (375)
.++.|+.....+.+ .+|..++.+|+-+|.+-+++ ...-. ..++-.++..... ++..+|-.|+.+|.+--.-...
T Consensus 130 li~~lv~nv~~~~~~~~k~~slealGyice~i~pe--vl~~~sN~iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~ 207 (859)
T KOG1241|consen 130 LIVTLVSNVGEEQASMVKESSLEALGYICEDIDPE--VLEQQSNDILTAIVQGMRKEETSAAVRLAALNALYNSLEFTKA 207 (859)
T ss_pred HHHHHHHhcccccchHHHHHHHHHHHHHHccCCHH--HHHHHHhHHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHH
Confidence 34444554444444 47888999999999988344 22222 2456667776644 4678999999999885432111
Q ss_pred hHHH-HHHcCChHHHHHhhcCCChHHHHHHHHHHHHhhcc-CC-ChhHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHh
Q 017249 102 NKVK-IATAGAIPPLVELLKFQNGTLRELAAAAILTLSAA-AP-NKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYL 178 (375)
Q Consensus 102 ~r~~-i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~-~~-~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~~L 178 (375)
+-.. .-..-.+..+++.-.+++.+++..|..||..+..- -+ -... +....+..-+..+++.++++...+...-+++
T Consensus 208 nF~~E~ern~iMqvvcEatq~~d~~i~~aa~~ClvkIm~LyY~~m~~y-M~~alfaitl~amks~~deValQaiEFWsti 286 (859)
T KOG1241|consen 208 NFNNEMERNYIMQVVCEATQSPDEEIQVAAFQCLVKIMSLYYEFMEPY-MEQALFAITLAAMKSDNDEVALQAIEFWSTI 286 (859)
T ss_pred hhccHhhhceeeeeeeecccCCcHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 1111 11233455666676788999999999999987542 12 1222 2344555666677888888888887666666
Q ss_pred ccCC-C-----------Cc----hhhh---hcCCcHHHHHHhhhcccch-----HHHHHHHHHHHHhhCChhhhHHHhhc
Q 017249 179 STCK-E-----------NS----SPIL---DATAVPPLINLLKDCKKYS-----KFAEKATALLEILSSSEEGRIAITNS 234 (375)
Q Consensus 179 ~~~~-~-----------~~----~~i~---~~g~i~~Lv~ll~~~~~~~-----~~~~~a~~~L~~l~~~~~~~~~~~~~ 234 (375)
|... + .. ..+. -.+++|.|+++|...+++. ....+|..+|.-++.. . .
T Consensus 287 ceEEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~-------~-~ 358 (859)
T KOG1241|consen 287 CEEEIDLAIEYGEAVDQGLPPSSKYFARQALQDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQC-------V-G 358 (859)
T ss_pred HHHHHHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHH-------h-c
Confidence 5321 0 11 1111 1367888999887622111 2334555555544422 1 2
Q ss_pred cCcHHHHHHH----hccCChHHHHHHHHHHHHhcccCcHHHHHHHHHcCChHHHHHHhhhCCHHHHHHHHHHHHHhhcCC
Q 017249 235 DGGILTLVET----VEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDTP 310 (375)
Q Consensus 235 ~g~v~~Lv~l----L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~~~~~A~~~L~~l~~~~ 310 (375)
...++.++++ +++++-.-++.|+.+++.+-.+..+. +..=.-.+++|.++.++.+++-.++..++|.|..++++-
T Consensus 359 D~Iv~~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~-~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l 437 (859)
T KOG1241|consen 359 DDIVPHVLPFIEENIQNPDWRNREAAVMAFGSILEGPEPD-KLTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIADFL 437 (859)
T ss_pred ccchhhhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchh-hhhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhc
Confidence 3455555555 45667777888999999988876433 333345789999999999889999999999999999988
Q ss_pred hhhhhhhhhHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHHH
Q 017249 311 QEKRLSSSVLEKIVYDIAARVDGADKAAETAKRLLQDMVQRSMEL 355 (375)
Q Consensus 311 ~~~~~~~g~~~~l~~~l~~~~~g~~~~~~~a~~~l~~l~~~s~~~ 355 (375)
+......-..+.++..+.-.....|+....+.+++-.|.++..+.
T Consensus 438 ~e~~~n~~~l~~~l~~l~~gL~DePrva~N~CWAf~~Laea~~eA 482 (859)
T KOG1241|consen 438 PEAIINQELLQSKLSALLEGLNDEPRVASNVCWAFISLAEAAYEA 482 (859)
T ss_pred hhhcccHhhhhHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHHh
Confidence 764444333333333332233445999999999999998775543
No 66
>PF05536 Neurochondrin: Neurochondrin
Probab=98.39 E-value=3.2e-05 Score=75.90 Aligned_cols=236 Identities=16% Similarity=0.091 Sum_probs=158.4
Q ss_pred HhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCChh---hHHHHHhcCChHHHHHhhCCC-------CHHHHHHHHHHHH
Q 017249 24 QALIEELSDKLINGDLETKIEAARDIRKVVKKSSLK---TRSEFAAAGVVQPLVLMLVSP-------NLDAIESSLLALL 93 (375)
Q Consensus 24 ~~~l~~Lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~---~~~~~~~~g~v~~Lv~~L~~~-------~~~~~~~a~~~L~ 93 (375)
...+.+.+.+|++.+.+.|..++-.+.++.... +. .++.+.+.=+.+.|-++|.++ ....+.-|+..|.
T Consensus 4 ~~~l~~c~~lL~~~~D~~rfagL~lvtk~~~~~-~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~ 82 (543)
T PF05536_consen 4 SASLEKCLSLLKSADDTERFAGLLLVTKLLDAD-DEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLA 82 (543)
T ss_pred hHHHHHHHHHhccCCcHHHHHHHHHHHHcCCCc-hhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHH
Confidence 456889999999888888999999999999877 42 344566776678888888773 3567888999999
Q ss_pred HhhccChhhHHHHHHcCChHHHHHhhcCCCh-HHHHHHHHHHHHhhccCCChhHHHhcCChHHHHHHhccCCHHHHHHHH
Q 017249 94 NLAVRNERNKVKIATAGAIPPLVELLKFQNG-TLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHSGSVQGRVDAV 172 (375)
Q Consensus 94 ~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~-~~~~~a~~~L~~Ls~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~ 172 (375)
.+|. .++....---.+-||.|+..+.+.+. ++...+..+|..++..++++..+.+.|+++.|.+.+.+ .+.....|+
T Consensus 83 ~f~~-~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~G~~aLl~~g~v~~L~ei~~~-~~~~~E~Al 160 (543)
T PF05536_consen 83 AFCR-DPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIASSPEGAKALLESGAVPALCEIIPN-QSFQMEIAL 160 (543)
T ss_pred HHcC-ChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcHhHHHHHhcCCHHHHHHHHHh-CcchHHHHH
Confidence 9998 56554333334569999999988876 99999999999999999999999999999999999988 455688888
Q ss_pred HHHHHhccCCCCchhhhh----cCCcHHHHHHhhhcccchHHHHHHHHHHHHhhCChhh--hHHHhhccCcHHHHH----
Q 017249 173 TALHYLSTCKENSSPILD----ATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEG--RIAITNSDGGILTLV---- 242 (375)
Q Consensus 173 ~~L~~L~~~~~~~~~i~~----~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~~~~~--~~~~~~~~g~v~~Lv---- 242 (375)
.++.++.........--. ...++.+-+.+...... .+-..+..|..+-...+. ..... .......+.
T Consensus 161 ~lL~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~~~--~kfell~~L~~~L~~~~~~~~~~~~-~~~W~~~l~~gl~ 237 (543)
T PF05536_consen 161 NLLLNLLSRLGQKSWAEDSQLLHSILPSLARDFSSFHGE--DKFELLEFLSAFLPRSPILPLESPP-SPKWLSDLRKGLR 237 (543)
T ss_pred HHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhccc--hHHHHHHHHHHhcCcCCccccccCC-hhhhHHHHHHHHH
Confidence 888888754321110011 12334444444433222 233356667666543321 11111 234444444
Q ss_pred HHhcc-CChHHHHHHHHHHHHhcc
Q 017249 243 ETVED-GSLVSTQHAVGALLSLCQ 265 (375)
Q Consensus 243 ~lL~~-~~~~~~~~a~~~L~~l~~ 265 (375)
.+|.+ ..+..|..++.....+..
T Consensus 238 ~iL~sr~~~~~R~~al~Laa~Ll~ 261 (543)
T PF05536_consen 238 DILQSRLTPSQRDPALNLAASLLD 261 (543)
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHH
Confidence 33333 345556666665555544
No 67
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=98.38 E-value=0.00056 Score=69.28 Aligned_cols=317 Identities=14% Similarity=0.086 Sum_probs=201.9
Q ss_pred hHHHHHHHHhc-CCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhccChhhH
Q 017249 25 ALIEELSDKLI-NGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIESSLLALLNLAVRNERNK 103 (375)
Q Consensus 25 ~~l~~Lv~~L~-s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~~~~~~~~~a~~~L~~L~~~~~~~r 103 (375)
+.++.++..|. .+++.++..|+..+..+.... ++.+-++..|.+..|+.+|.+. +..++.++..|..|+. +++.-
T Consensus 1771 g~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Tan~--~Cv~~~a~~~vL~~LL~lLHS~-PS~R~~vL~vLYAL~S-~~~i~ 1846 (2235)
T KOG1789|consen 1771 GNFPLLITYLRCRKHPKLQILALQVILLATANK--ECVTDLATCNVLTTLLTLLHSQ-PSMRARVLDVLYALSS-NGQIG 1846 (2235)
T ss_pred cccHHHHHHHHHcCCchHHHHHHHHHHHHhccc--HHHHHHHhhhHHHHHHHHHhcC-hHHHHHHHHHHHHHhc-CcHHH
Confidence 34566677776 578889999999998888777 8999999999999999999875 5679999999999998 56666
Q ss_pred HHHHHcCChHHHHHhhc-CCChHHHHHHHHHHHHhhccCC--ChhHH----------H--hcCChHHHHHHhccC--CH-
Q 017249 104 VKIATAGAIPPLVELLK-FQNGTLRELAAAAILTLSAAAP--NKPAI----------A--ASGAAPLLVQILHSG--SV- 165 (375)
Q Consensus 104 ~~i~~~g~i~~Lv~lL~-~~~~~~~~~a~~~L~~Ls~~~~--~~~~i----------~--~~~~l~~L~~lL~~~--~~- 165 (375)
..-.+.|++..+..++- +.++..|..++..+..|..++- .+..| + -.++-++.++++... ++
T Consensus 1847 keA~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Adkl~GPrV~ITL~kFLP~~f~d~~RD~PEAaVH~fE~T~EnPE 1926 (2235)
T KOG1789|consen 1847 KEALEHGGLMYILSILCLTNSDQQRAQAAELLAKLQADKLTGPRVTITLIKFLPEIFADSLRDSPEAAVHMFESTSENPE 1926 (2235)
T ss_pred HHHHhcCchhhhhHHHhccCcHHHHHHHHHHHHHhhhccccCCceeeehHHhchHHHHHHHhcCHHHHHHHHhccCCCcc
Confidence 66667788888877664 4578899999999999876642 12111 1 012224555555432 22
Q ss_pred -----HHHHHHHHHHHHhcc--------CCCCc-------------------------hhhhh------------cCCcH
Q 017249 166 -----QGRVDAVTALHYLST--------CKENS-------------------------SPILD------------ATAVP 195 (375)
Q Consensus 166 -----~~~~~a~~~L~~L~~--------~~~~~-------------------------~~i~~------------~g~i~ 195 (375)
..+...-..+..+.. ++... ..+.+ .+.++
T Consensus 1927 LiWn~~~r~kvS~~i~tM~~~~y~~QQk~p~~~W~~PEqsAg~~Ea~~E~aVGG~~~R~Fi~~P~f~LR~Pk~FL~~LLe 2006 (2235)
T KOG1789|consen 1927 LIWNEVTRQKVSGIIDTMVGKLYEQQQKDPTVKWNTPEQSAGTSEADKECAVGGSINREFVVGPGFNLRHPKLFLTELLE 2006 (2235)
T ss_pred cccCHhHHHHHHHHHHHHHHHHHHHhccCCcccccCchhhcchhhhccCcccchhhhHHHhhCCCCcccCHHHHHHHHHH
Confidence 222333333333321 11110 01111 12344
Q ss_pred HHHHHhhhcccchHHHHHHHHHHHHhhC-ChhhhHHHhhccCcHHHHHHHhccCChHHHHHHHHHHHHhcccCcHHHHHH
Q 017249 196 PLINLLKDCKKYSKFAEKATALLEILSS-SEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQL 274 (375)
Q Consensus 196 ~Lv~ll~~~~~~~~~~~~a~~~L~~l~~-~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~ 274 (375)
.++.++....+.....+....++-.|.. +|.-..++- .-|.+|.++..+...+..+-..|+++|..|+.+. -+.++
T Consensus 2007 k~lelm~~~~peqh~l~lLt~A~V~L~r~hP~LADqip-~LGylPK~~~Am~~~n~s~P~SaiRVlH~Lsen~--~C~~A 2083 (2235)
T KOG1789|consen 2007 KVLELMSRPTPEQHELDLLTKAFVELVRHHPNLADQLP-SLGYLPKFCTAMCLQNTSAPRSAIRVLHELSENQ--FCCDA 2083 (2235)
T ss_pred HHHHHhcCCCcccchhHHHHHHHHHHHHhCcchhhhCC-CccchHHHHHHHHhcCCcCcHHHHHHHHHHhhcc--HHHHH
Confidence 5555555544443333333444444444 444444444 6799999999987666556689999999999875 77888
Q ss_pred HHHcCChHHHHHHhhhCCHHHHHHHHHHHHHhhcCChh----hhhhhhhHHHHHHHHhhc----CCChHHHHHHHHHHHH
Q 017249 275 ILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDTPQE----KRLSSSVLEKIVYDIAAR----VDGADKAAETAKRLLQ 346 (375)
Q Consensus 275 l~~~g~v~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~~----~~~~~g~~~~l~~~l~~~----~~g~~~~~~~a~~~l~ 346 (375)
+.....+..++..+... +..---|+.+|..+-...+. ...+.|.++-|+.+|.+. .+.-..++....++|+
T Consensus 2084 MA~l~~i~~~m~~mkK~-~~~~GLA~EalkR~~~r~~~eLVAQ~LK~gLvpyLL~LLd~~tL~~~~~~aas~A~Iv~aLk 2162 (2235)
T KOG1789|consen 2084 MAQLPCIDGIMKSMKKQ-PSLMGLAAEALKRLMKRNTGELVAQMLKCGLVPYLLQLLDSSTLNGVSNGAAARAEIVDALK 2162 (2235)
T ss_pred HhccccchhhHHHHHhc-chHHHHHHHHHHHHHHHhHHHHHHHHhccCcHHHHHHHhccccccccCchhHHHHHHHHHHH
Confidence 98877777788866643 33334778888877665544 456678888888766422 1111444455555666
Q ss_pred HHH
Q 017249 347 DMV 349 (375)
Q Consensus 347 ~l~ 349 (375)
..+
T Consensus 2163 ~~~ 2165 (2235)
T KOG1789|consen 2163 SAI 2165 (2235)
T ss_pred HHH
Confidence 554
No 68
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=98.37 E-value=0.00011 Score=70.72 Aligned_cols=278 Identities=14% Similarity=0.139 Sum_probs=178.7
Q ss_pred HHHHHHHHhhCChhhHHHHHhcCChHHHHHhh----------CCCCHHHHHHHHHHHHHhhccChhhHHHHHHcCChHHH
Q 017249 46 ARDIRKVVKKSSLKTRSEFAAAGVVQPLVLML----------VSPNLDAIESSLLALLNLAVRNERNKVKIATAGAIPPL 115 (375)
Q Consensus 46 ~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L----------~~~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~L 115 (375)
+.+|.-++.+. ...+.+....++..|..+- ...+.++...|+++|.|+...++..|..+.+.|..+.+
T Consensus 2 L~~LRiLsRd~--~~~~~l~~~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l 79 (446)
T PF10165_consen 2 LETLRILSRDP--TGLDPLFTEEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKL 79 (446)
T ss_pred HHHHHHHccCc--ccchhhccHHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHH
Confidence 34455555554 4555555555566665554 34578999999999999999999999999999999999
Q ss_pred HHhhcCC-----ChHHHHHHHHHHHHhhccC-CChhHHH-hcCChHHHHHHhcc-----------------CCHHHHHHH
Q 017249 116 VELLKFQ-----NGTLRELAAAAILTLSAAA-PNKPAIA-ASGAAPLLVQILHS-----------------GSVQGRVDA 171 (375)
Q Consensus 116 v~lL~~~-----~~~~~~~a~~~L~~Ls~~~-~~~~~i~-~~~~l~~L~~lL~~-----------------~~~~~~~~a 171 (375)
+..|+.. +.++.....+.|.-++... ..+..+. +.+++..++..|.. .+......+
T Consensus 80 ~~~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~Ei 159 (446)
T PF10165_consen 80 CERLKNYSDSSQPSDVEFLDSRLLFLLTALRPDDRKKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEI 159 (446)
T ss_pred HHHHHcccccCCChhHHHHHHHHHHHHhcCChhHHHHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHH
Confidence 9999876 6788888888887776543 3454544 55777877776521 123457788
Q ss_pred HHHHHHhccCCCCchhhhhcCCcHHHHHHhhhc-------ccchHHHHHHHHHHHHhhCC-hhh-------hHHH---hh
Q 017249 172 VTALHYLSTCKENSSPILDATAVPPLINLLKDC-------KKYSKFAEKATALLEILSSS-EEG-------RIAI---TN 233 (375)
Q Consensus 172 ~~~L~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~-------~~~~~~~~~a~~~L~~l~~~-~~~-------~~~~---~~ 233 (375)
+.++.|++........--..+.++.++.++..- .+.......+..+|.|+-.. ... .... ..
T Consensus 160 LKllFNit~~~~~~~~~~~~~~~~~l~~il~~~l~~~~~~~~l~~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~~~~ 239 (446)
T PF10165_consen 160 LKLLFNITLHYPKSVPEEFSPSIPHLVSILRRLLPPPPSSPPLDPPHSHAINALLNLPLECLDSLLSPKFQQSSLFPEGD 239 (446)
T ss_pred HHHHHHhhhccCcccchhhhHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHhCCChHHHhhhhcccCCcccccCCCC
Confidence 999999986533222212245666666665533 11223445556666665211 111 0000 11
Q ss_pred ccCcHHHHHHHhcc-----CC---hHHHHHHHHHHHHhcccCcHHHHHHHHH----------------cCChHHHHHHhh
Q 017249 234 SDGGILTLVETVED-----GS---LVSTQHAVGALLSLCQSCRDKYRQLILK----------------EGAIPGLLRLTV 289 (375)
Q Consensus 234 ~~g~v~~Lv~lL~~-----~~---~~~~~~a~~~L~~l~~~~~~~~~~~l~~----------------~g~v~~L~~ll~ 289 (375)
....+..|+.+|+. .. ...-...+.+|.+++..+ ...|+.+.. ...-..|++++.
T Consensus 240 ~~~~v~~Ll~~Ld~~l~~~~~~~l~~~l~PlL~lL~~~~~~~-~~~Rk~lr~~lLP~~~Dr~~~~e~~~tL~~rLlrLmt 318 (446)
T PF10165_consen 240 NMDVVERLLDFLDKRLDKYEALKLDELLTPLLTLLTRLARAA-REVRKYLRARLLPPDKDRKKPPEKGDTLRSRLLRLMT 318 (446)
T ss_pred ChHHHHHHHHHHHHHHHhcCcccchhhHhhHHHHHHHHHHhc-HHHHHHHHHHhCCChhhcccCCCCCcchHHHHHHHhC
Confidence 23456777777742 11 245566778888888876 344555432 225578899998
Q ss_pred hCCHHHHHHHHHHHHHhhcCChh---hhhhhhhHHHHHHH
Q 017249 290 EGTFEAQERARTLLDLLRDTPQE---KRLSSSVLEKIVYD 326 (375)
Q Consensus 290 ~~~~~~~~~A~~~L~~l~~~~~~---~~~~~g~~~~l~~~ 326 (375)
+..+.++..++..|..||..... +.+..|..-+++..
T Consensus 319 ~~~~~~k~~vaellf~Lc~~d~~~~v~~~GyG~AaG~L~~ 358 (446)
T PF10165_consen 319 SPDPQLKDAVAELLFVLCKEDASRFVKYVGYGNAAGFLAS 358 (446)
T ss_pred CCCchHHHHHHHHHHHHHhhhHHHHHHHcCchhHHHHHHH
Confidence 88899999999999999987755 44456655555543
No 69
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.35 E-value=0.00027 Score=68.80 Aligned_cols=257 Identities=13% Similarity=0.128 Sum_probs=173.0
Q ss_pred hHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhccChhh
Q 017249 23 KQALIEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIESSLLALLNLAVRNERN 102 (375)
Q Consensus 23 ~~~~l~~Lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~~~~~~~~~a~~~L~~L~~~~~~~ 102 (375)
.++.-+.++.+|+++.+-++..|+-.+..++..-|+..|. ..|.|++-|.++|+.++-.|+..++.|++.+|.+
T Consensus 142 ARDLa~Dv~tLL~sskpYvRKkAIl~lykvFLkYPeAlr~------~FprL~EkLeDpDp~V~SAAV~VICELArKnPkn 215 (877)
T KOG1059|consen 142 ARDLADDVFTLLNSSKPYVRKKAILLLYKVFLKYPEALRP------CFPRLVEKLEDPDPSVVSAAVSVICELARKNPQN 215 (877)
T ss_pred hHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhhHhHhh------hHHHHHHhccCCCchHHHHHHHHHHHHHhhCCcc
Confidence 3566788999999999999999999999998777344444 4789999999999999999999999999988877
Q ss_pred HHHHHHcCChHHHHHhhcCC-ChHHHHHHHHHHHHhhccCCChhHHHhcCChHHHHHHhccCC-HHHHHHHHHHHHHh--
Q 017249 103 KVKIATAGAIPPLVELLKFQ-NGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHSGS-VQGRVDAVTALHYL-- 178 (375)
Q Consensus 103 r~~i~~~g~i~~Lv~lL~~~-~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~l~~L~~lL~~~~-~~~~~~a~~~L~~L-- 178 (375)
.-.+ -|.+..+|... +-=+....+..+.+|+...+- .....+++|.+++++.. ..+.+.+..++..-
T Consensus 216 yL~L-----AP~ffkllttSsNNWmLIKiiKLF~aLtplEPR----LgKKLieplt~li~sT~AmSLlYECvNTVVa~s~ 286 (877)
T KOG1059|consen 216 YLQL-----APLFYKLLVTSSNNWVLIKLLKLFAALTPLEPR----LGKKLIEPITELMESTVAMSLLYECVNTVVAVSM 286 (877)
T ss_pred cccc-----cHHHHHHHhccCCCeehHHHHHHHhhccccCch----hhhhhhhHHHHHHHhhHHHHHHHHHHHHheeehh
Confidence 6544 56778877544 444566777788888765441 23467899999998875 45566676665533
Q ss_pred ccCCCCchhhhhcCCcHHHHHHhhhcccchHHHHHHHHHHHHhhCChhhhHHHhhccCcHHHHHHHhccCChHHHHHHHH
Q 017249 179 STCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVG 258 (375)
Q Consensus 179 ~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~ 258 (375)
+.+-.+....+. -.++.|--++.++ ++.++-.++-+++.+...+...-+ ..-+.++..|.+.++.+|..|+.
T Consensus 287 s~g~~d~~asiq-LCvqKLr~fieds--DqNLKYlgLlam~KI~ktHp~~Vq-----a~kdlIlrcL~DkD~SIRlrALd 358 (877)
T KOG1059|consen 287 SSGMSDHSASIQ-LCVQKLRIFIEDS--DQNLKYLGLLAMSKILKTHPKAVQ-----AHKDLILRCLDDKDESIRLRALD 358 (877)
T ss_pred ccCCCCcHHHHH-HHHHHHhhhhhcC--CccHHHHHHHHHHHHhhhCHHHHH-----HhHHHHHHHhccCCchhHHHHHH
Confidence 332222222221 1455555566665 345666667777776653322111 23356778899999999999999
Q ss_pred HHHHhcccCcHHHHHHHHHcCChHHHHHHhhhCC-HHHH-HHHHHHHHHhhcCC
Q 017249 259 ALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGT-FEAQ-ERARTLLDLLRDTP 310 (375)
Q Consensus 259 ~L~~l~~~~~~~~~~~l~~~g~v~~L~~ll~~~~-~~~~-~~A~~~L~~l~~~~ 310 (375)
.|..+.... +... ++..|+..+...+ ..-+ +-...++..|+.+.
T Consensus 359 Ll~gmVskk---Nl~e-----IVk~LM~~~~~ae~t~yrdell~~II~iCS~sn 404 (877)
T KOG1059|consen 359 LLYGMVSKK---NLME-----IVKTLMKHVEKAEGTNYRDELLTRIISICSQSN 404 (877)
T ss_pred HHHHHhhhh---hHHH-----HHHHHHHHHHhccchhHHHHHHHHHHHHhhhhh
Confidence 999887653 2222 3456666444322 2344 44455777777666
No 70
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=98.34 E-value=8.4e-05 Score=71.26 Aligned_cols=306 Identities=16% Similarity=0.151 Sum_probs=182.8
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCCCCHHHHHH-HHHHHHHhhccChhhHH
Q 017249 26 LIEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIES-SLLALLNLAVRNERNKV 104 (375)
Q Consensus 26 ~l~~Lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~~~~~~~~~-a~~~L~~L~~~~~~~r~ 104 (375)
..+.+.+++.+.+...+..+...+..+..+. ....+.+.+++..|-....+.....+.. +.-+....+..-.
T Consensus 135 ~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~---~i~~~~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg---- 207 (569)
T KOG1242|consen 135 VLELLLELLTSTKIAERAGAAYGLAGLVNGL---GIESLKEFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLG---- 207 (569)
T ss_pred HHHHHHHHhccccHHHHhhhhHHHHHHHcCc---HHhhhhhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcC----
Confidence 4555666666666677777777777776665 4444556677777777776654333222 2222222221110
Q ss_pred HHHHcCChHHHHHhh---cCCChHHHHHHHHHHHHhhccCCChhHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccC
Q 017249 105 KIATAGAIPPLVELL---KFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTC 181 (375)
Q Consensus 105 ~i~~~g~i~~Lv~lL---~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~~L~~~ 181 (375)
...+.+.++.|-.++ .+....+|..|..+...+...-.. ......++.++.-+....-..+..++..|..++..
T Consensus 208 ~~~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~---~aVK~llpsll~~l~~~kWrtK~aslellg~m~~~ 284 (569)
T KOG1242|consen 208 PPFEPYIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLSA---YAVKLLLPSLLGSLLEAKWRTKMASLELLGAMADC 284 (569)
T ss_pred CCCCchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCc---chhhHhhhhhHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence 222344444444444 445677777777766665332110 01122344444444444567788889999988887
Q ss_pred CCCchhhhhcCCcHHHHHHhhhcccchHHHHHHHHHHHHhhCChhhhHHHhhccCcHHHHHHHhccCChHHHHHHHHHHH
Q 017249 182 KENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALL 261 (375)
Q Consensus 182 ~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~ 261 (375)
.+..-......++|.+.+.|.+. .+.+++.+..++..++...+|-. +. ..++.|+..+.+++..+ ..++..|.
T Consensus 285 ap~qLs~~lp~iiP~lsevl~DT--~~evr~a~~~~l~~~~svidN~d-I~---~~ip~Lld~l~dp~~~~-~e~~~~L~ 357 (569)
T KOG1242|consen 285 APKQLSLCLPDLIPVLSEVLWDT--KPEVRKAGIETLLKFGSVIDNPD-IQ---KIIPTLLDALADPSCYT-PECLDSLG 357 (569)
T ss_pred chHHHHHHHhHhhHHHHHHHccC--CHHHHHHHHHHHHHHHHhhccHH-HH---HHHHHHHHHhcCcccch-HHHHHhhc
Confidence 76666667788999999999987 56789999999999987655554 22 47888999988766322 34444443
Q ss_pred HhcccCcHHHHHHHHHcCChHHHHHHhhhCCHHHHHHHHHHHHHhhcCChhhhhhhhhHHHHHHHHhhcC-CChHHHHHH
Q 017249 262 SLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDTPQEKRLSSSVLEKIVYDIAARV-DGADKAAET 340 (375)
Q Consensus 262 ~l~~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~~~~~~~g~~~~l~~~l~~~~-~g~~~~~~~ 340 (375)
.-..-. . .+.-.-.=.+|.|.+-+...+..+++.++.+..|++.-.++...-.-+++.|+..+..-. +-.|.+|+-
T Consensus 358 ~ttFV~--~-V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~lapfl~~Llp~lk~~~~d~~PEvR~v 434 (569)
T KOG1242|consen 358 ATTFVA--E-VDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDLAPFLPSLLPGLKENLDDAVPEVRAV 434 (569)
T ss_pred ceeeee--e-ecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHHhhhHHHHhhHHHHHhcCCChhHHHH
Confidence 322211 0 000000124566666777788899999999999999877432222334444433333222 224899999
Q ss_pred HHHHHHHHHHH
Q 017249 341 AKRLLQDMVQR 351 (375)
Q Consensus 341 a~~~l~~l~~~ 351 (375)
+.++|.-+.++
T Consensus 435 aarAL~~l~e~ 445 (569)
T KOG1242|consen 435 AARALGALLER 445 (569)
T ss_pred HHHHHHHHHHH
Confidence 99999666543
No 71
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=98.33 E-value=6.3e-05 Score=66.73 Aligned_cols=289 Identities=13% Similarity=0.079 Sum_probs=196.4
Q ss_pred HHHHHhhHhHHHHHHHHhcCC-------C---HHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCCCCHHHHH
Q 017249 17 EAWNQRKQALIEELSDKLING-------D---LETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIE 86 (375)
Q Consensus 17 ~~~~~~~~~~l~~Lv~~L~s~-------~---~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~~~~~~~~ 86 (375)
+...+....-+|.....|+-+ + .+..-.++.+|-.+.+.. +..+. -.+..+.|-.-|..++..++.
T Consensus 25 SVkealdlfeLpqiaaaLqldpdifgfeNenhrekttlcVscLERLfkak--egahl--apnlmpdLQrGLiaddasVKi 100 (524)
T KOG4413|consen 25 SVKEALDLFELPQIAAALQLDPDIFGFENENHREKTTLCVSCLERLFKAK--EGAHL--APNLMPDLQRGLIADDASVKI 100 (524)
T ss_pred HHHHhcccchhHHHHHHHhcCCCCcccccccccchhhhHHHHHHHHHhhc--cchhh--chhhhHHHHhcccCCcchhhh
Confidence 334445555667777766632 2 223333777777777655 22221 113345555566777888889
Q ss_pred HHHHHHHHhhccChhhH----HHHHHcCChHHHHHhhcCCChHHHHHHHHHHHHhhccCCChhHHHhcCChHHH--HHHh
Q 017249 87 SSLLALLNLAVRNERNK----VKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLL--VQIL 160 (375)
Q Consensus 87 ~a~~~L~~L~~~~~~~r----~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~l~~L--~~lL 160 (375)
-++..++-+..++..+- ..+++.|..+.++..+...+.++-..|...+..++..+..-..+.....++.+ ..+-
T Consensus 101 LackqigcilEdcDtnaVseillvvNaeilklildcIggeddeVAkAAiesikrialfpaaleaiFeSellDdlhlrnla 180 (524)
T KOG4413|consen 101 LACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGEDDEVAKAAIESIKRIALFPAALEAIFESELLDDLHLRNLA 180 (524)
T ss_pred hhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcHHHHHHhcccccCChHHHhHHH
Confidence 99998888887665432 34557899999999999999999999999999999888877777766665543 3333
Q ss_pred ccCCHHHHHHHHHHHHHhccC-CCCchhhhhcCCcHHHHHHhhhcccchHHHHHHHHHHHHhhCChhhhHHHhhccCcHH
Q 017249 161 HSGSVQGRVDAVTALHYLSTC-KENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGIL 239 (375)
Q Consensus 161 ~~~~~~~~~~a~~~L~~L~~~-~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~ 239 (375)
...+.-++...+..+..+.+- ++.......+|.+..|..-+.... +.-+..++......|+..+.++..+. ..|.++
T Consensus 181 akcndiaRvRVleLIieifSiSpesaneckkSGLldlLeaElkGte-DtLVianciElvteLaeteHgrefla-QeglId 258 (524)
T KOG4413|consen 181 AKCNDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAELKGTE-DTLVIANCIELVTELAETEHGREFLA-QEGLID 258 (524)
T ss_pred hhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCCc-ceeehhhHHHHHHHHHHHhhhhhhcc-hhhHHH
Confidence 344556677778888887654 455556566788888887777643 44577888999999999999998888 579999
Q ss_pred HHHHHhcc--CChHHHHHHHHHHHHhcccCcH-H-HHHHHHH--cCChHHHHHHhhhCCHHHHHHHHHHHHHhhcCCh
Q 017249 240 TLVETVED--GSLVSTQHAVGALLSLCQSCRD-K-YRQLILK--EGAIPGLLRLTVEGTFEAQERARTLLDLLRDTPQ 311 (375)
Q Consensus 240 ~Lv~lL~~--~~~~~~~~a~~~L~~l~~~~~~-~-~~~~l~~--~g~v~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~ 311 (375)
.+..++.. .+|--+-.++.....+-...+- + .-+.+.+ .-+++...+++...||..++.|+.+|..+.+...
T Consensus 259 licnIIsGadsdPfekfralmgfgkffgkeaimdvseeaicealiiaidgsfEmiEmnDpdaieaAiDalGilGSnte 336 (524)
T KOG4413|consen 259 LICNIISGADSDPFEKFRALMGFGKFFGKEAIMDVSEEAICEALIIAIDGSFEMIEMNDPDAIEAAIDALGILGSNTE 336 (524)
T ss_pred HHHHHhhCCCCCcHHHHHHHHHHHHHhcchHHhhcCHHHHHHHHHHHHHhhHHhhhcCCchHHHHHHHHHHhccCCcc
Confidence 99999863 3344444455555554432210 0 0112222 2355666778888999999999999999987763
No 72
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=98.33 E-value=0.00017 Score=69.30 Aligned_cols=255 Identities=16% Similarity=0.108 Sum_probs=173.6
Q ss_pred chhhhHHHHHhhHhHHHHHHHHh----------cCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCCC-
Q 017249 12 TDQEEEAWNQRKQALIEELSDKL----------INGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSP- 80 (375)
Q Consensus 12 ~~~~~~~~~~~~~~~l~~Lv~~L----------~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~~- 80 (375)
+.|..+...+...+++..|...- .+.++++..+|+++|.|+...+ +..|..+++.|+.+.+++.|+..
T Consensus 9 sRd~~~~~~l~~~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s-~~aR~~~~~~~~~~~l~~~Lk~~~ 87 (446)
T PF10165_consen 9 SRDPTGLDPLFTEEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLS-PSARQIFVDLGLAEKLCERLKNYS 87 (446)
T ss_pred ccCcccchhhccHHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCC-HHHHHHHHHcCcHHHHHHHHHccc
Confidence 34555677778888888888765 3568899999999999999999 99999999999999999999876
Q ss_pred ----CHHHHHHHHHHHHHhhccChhhHHHHHH-cCChHHHHHhhcC-----------------CChHHHHHHHHHHHHhh
Q 017249 81 ----NLDAIESSLLALLNLAVRNERNKVKIAT-AGAIPPLVELLKF-----------------QNGTLRELAAAAILTLS 138 (375)
Q Consensus 81 ----~~~~~~~a~~~L~~L~~~~~~~r~~i~~-~g~i~~Lv~lL~~-----------------~~~~~~~~a~~~L~~Ls 138 (375)
+.++.--..+.|.-++......+..+++ .+++..++..|.. .+......++.++.|+.
T Consensus 88 ~~~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiLKllFNit 167 (446)
T PF10165_consen 88 DSSQPSDVEFLDSRLLFLLTALRPDDRKKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEILKLLFNIT 167 (446)
T ss_pred ccCCChhHHHHHHHHHHHHhcCChhHHHHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHHHHHHHhh
Confidence 6888899999999999888888888777 4788888776621 13345667888999998
Q ss_pred ccCCChhHHHhcCChHHHHHHhcc-------C--CHHHHHHHHHHHHHhccCC-CC-------ch----hhhhcCCcHHH
Q 017249 139 AAAPNKPAIAASGAAPLLVQILHS-------G--SVQGRVDAVTALHYLSTCK-EN-------SS----PILDATAVPPL 197 (375)
Q Consensus 139 ~~~~~~~~i~~~~~l~~L~~lL~~-------~--~~~~~~~a~~~L~~L~~~~-~~-------~~----~i~~~g~i~~L 197 (375)
.+......-.....++.++.+|.. . .......+..+|.|+-... +. .. .......+..|
T Consensus 168 ~~~~~~~~~~~~~~~~~l~~il~~~l~~~~~~~~l~~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~~~~~~~~v~~L 247 (446)
T PF10165_consen 168 LHYPKSVPEEFSPSIPHLVSILRRLLPPPPSSPPLDPPHSHAINALLNLPLECLDSLLSPKFQQSSLFPEGDNMDVVERL 247 (446)
T ss_pred hccCcccchhhhHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHhCCChHHHhhhhcccCCcccccCCCCChHHHHHH
Confidence 765433221123344444444321 1 2456778888888773110 00 11 11123456677
Q ss_pred HHHhhhc----c--cchHHHHHHHHHHHHhhCC-hhhhHHHhh--------------ccC-cHHHHHHHhccCChHHHHH
Q 017249 198 INLLKDC----K--KYSKFAEKATALLEILSSS-EEGRIAITN--------------SDG-GILTLVETVEDGSLVSTQH 255 (375)
Q Consensus 198 v~ll~~~----~--~~~~~~~~a~~~L~~l~~~-~~~~~~~~~--------------~~g-~v~~Lv~lL~~~~~~~~~~ 255 (375)
+.+|... . .........+.+|..++.. ...|+.+-. ..+ .-..|+.++.+..+.++..
T Consensus 248 l~~Ld~~l~~~~~~~l~~~l~PlL~lL~~~~~~~~~~Rk~lr~~lLP~~~Dr~~~~e~~~tL~~rLlrLmt~~~~~~k~~ 327 (446)
T PF10165_consen 248 LDFLDKRLDKYEALKLDELLTPLLTLLTRLARAAREVRKYLRARLLPPDKDRKKPPEKGDTLRSRLLRLMTSPDPQLKDA 327 (446)
T ss_pred HHHHHHHHHhcCcccchhhHhhHHHHHHHHHHhcHHHHHHHHHHhCCChhhcccCCCCCcchHHHHHHHhCCCCchHHHH
Confidence 7776542 1 1112344556667777764 444444332 122 3447999998888999999
Q ss_pred HHHHHHHhcccC
Q 017249 256 AVGALLSLCQSC 267 (375)
Q Consensus 256 a~~~L~~l~~~~ 267 (375)
+...|+.||..+
T Consensus 328 vaellf~Lc~~d 339 (446)
T PF10165_consen 328 VAELLFVLCKED 339 (446)
T ss_pred HHHHHHHHHhhh
Confidence 999999999765
No 73
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=98.30 E-value=1.5e-06 Score=53.70 Aligned_cols=40 Identities=35% Similarity=0.471 Sum_probs=38.0
Q ss_pred hhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhc
Q 017249 58 LKTRSEFAAAGVVQPLVLMLVSPNLDAIESSLLALLNLAV 97 (375)
Q Consensus 58 ~~~~~~~~~~g~v~~Lv~~L~~~~~~~~~~a~~~L~~L~~ 97 (375)
++++..+++.|+++.|+++|++++.++++.|+++|+||+.
T Consensus 2 ~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~~ 41 (41)
T PF00514_consen 2 PENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLAA 41 (41)
T ss_dssp HHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence 6889999999999999999999999999999999999973
No 74
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.30 E-value=2.9e-05 Score=73.33 Aligned_cols=322 Identities=14% Similarity=0.121 Sum_probs=201.5
Q ss_pred hHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhccChhh
Q 017249 23 KQALIEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIESSLLALLNLAVRNERN 102 (375)
Q Consensus 23 ~~~~l~~Lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~~~~~~~~~a~~~L~~L~~~~~~~ 102 (375)
..+.+++.+..++..+..++--|+..+.|++... .......-....+.+.++-.+.+.. ...++..|-.+.++-...
T Consensus 82 ~~~iv~Pv~~cf~D~d~~vRyyACEsLYNiaKv~--k~~v~~~Fn~iFdvL~klsaDsd~~-V~~~aeLLdRLikdIVte 158 (675)
T KOG0212|consen 82 LEKIVPPVLNCFSDQDSQVRYYACESLYNIAKVA--KGEVLVYFNEIFDVLCKLSADSDQN-VRGGAELLDRLIKDIVTE 158 (675)
T ss_pred HHHhhHHHHHhccCccceeeeHhHHHHHHHHHHh--ccCcccchHHHHHHHHHHhcCCccc-cccHHHHHHHHHHHhccc
Confidence 3567888999999999999999999999998665 1111111123445566665555544 344555555555543323
Q ss_pred HH-HHHHcCChHHHHHhhcCCChHHHHHHHHHHHHhhccCCChhHHH-hcCChHHHHHHhccCCHHHHHHHHHHHHHhc-
Q 017249 103 KV-KIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIA-ASGAAPLLVQILHSGSVQGRVDAVTALHYLS- 179 (375)
Q Consensus 103 r~-~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~-~~~~l~~L~~lL~~~~~~~~~~a~~~L~~L~- 179 (375)
++ .+--.+.+|.|-.-+...++..|...+.-|..|-..++ ...+. -...++.|..+|.+++.+++.-+=.++.+.-
T Consensus 159 ~~~tFsL~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~P~-~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~ 237 (675)
T KOG0212|consen 159 SASTFSLPEFIPLLRERIYVINPMTRQFLVSWLYVLDSVPD-LEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLA 237 (675)
T ss_pred cccccCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCc-HHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHH
Confidence 33 22223445555555555688899888887777744333 34443 3567888999999999998876666655543
Q ss_pred ---cCCCCchhhhhcCCcHHHHHHhhhcccchHHHHHHHHHHHHhhCChhhhHHHhhccCcHHHHHHHhccCCh-HHHHH
Q 017249 180 ---TCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSL-VSTQH 255 (375)
Q Consensus 180 ---~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~-~~~~~ 255 (375)
+.+... --...++.++.-+.++ ++.++..|+..+..+..-+...-... -+|++..+++.+.+..+ .+++.
T Consensus 238 eI~s~P~s~---d~~~~i~vlv~~l~ss--~~~iq~~al~Wi~efV~i~g~~~l~~-~s~il~~iLpc~s~~e~~~i~~~ 311 (675)
T KOG0212|consen 238 EIRSSPSSM---DYDDMINVLVPHLQSS--EPEIQLKALTWIQEFVKIPGRDLLLY-LSGILTAILPCLSDTEEMSIKEY 311 (675)
T ss_pred HHhcCcccc---CcccchhhccccccCC--cHHHHHHHHHHHHHHhcCCCcchhhh-hhhhhhhcccCCCCCccccHHHH
Confidence 223221 1124556666666655 45678888888888876544333333 46788888888876554 34444
Q ss_pred HHHH---HHHhcccCcHHHHHHHHHcC-ChHHHHHHhhhCCHHHHHHHHHHHHHhhcCChhh--hhhhhhHHHHHHHHhh
Q 017249 256 AVGA---LLSLCQSCRDKYRQLILKEG-AIPGLLRLTVEGTFEAQERARTLLDLLRDTPQEK--RLSSSVLEKIVYDIAA 329 (375)
Q Consensus 256 a~~~---L~~l~~~~~~~~~~~l~~~g-~v~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~~~--~~~~g~~~~l~~~l~~ 329 (375)
+..+ |..++... ...+. ++.| .++.|.+.+.+...++|-.+..=+..+-+..+.+ .......+.|+..|
T Consensus 312 a~~~n~~l~~l~s~~--~~~~~-id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p~ql~~h~~~if~tLL~tL-- 386 (675)
T KOG0212|consen 312 AQMVNGLLLKLVSSE--RLKEE-IDYGSIIEVLTKYLSDDREETRIAVLNWIILLYHKAPGQLLVHNDSIFLTLLKTL-- 386 (675)
T ss_pred HHHHHHHHHHHHhhh--hhccc-cchHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhCcchhhhhccHHHHHHHHhh--
Confidence 4332 33444332 22222 4433 7788888999999999988887555554444443 34455888888877
Q ss_pred cCCChHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 017249 330 RVDGADKAAETAKRLLQDMVQRSMELSMTRI 360 (375)
Q Consensus 330 ~~~g~~~~~~~a~~~l~~l~~~s~~~~~~~~ 360 (375)
.|.++..-..+-.++.++...+-+.|..+|
T Consensus 387 -sd~sd~vvl~~L~lla~i~~s~~~~~~~~f 416 (675)
T KOG0212|consen 387 -SDRSDEVVLLALSLLASICSSSNSPNLRKF 416 (675)
T ss_pred -cCchhHHHHHHHHHHHHHhcCcccccHHHH
Confidence 477788889999999988766555444433
No 75
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=98.29 E-value=0.00013 Score=67.78 Aligned_cols=191 Identities=27% Similarity=0.266 Sum_probs=144.4
Q ss_pred CChHHHHHhhCCCCHHHHHHHHHHHHHhhccChhhHHHHHHcCChHHHHHhhcCCChHHHHHHHHHHHHhhccCCChhHH
Q 017249 68 GVVQPLVLMLVSPNLDAIESSLLALLNLAVRNERNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAI 147 (375)
Q Consensus 68 g~v~~Lv~~L~~~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i 147 (375)
..++.+++.+.+++..++..+.+.++.+.. ..+++.+..++.+.++.+|..++.+|..+
T Consensus 43 ~~~~~~~~~l~~~~~~vr~~aa~~l~~~~~-----------~~av~~l~~~l~d~~~~vr~~a~~aLg~~---------- 101 (335)
T COG1413 43 EAADELLKLLEDEDLLVRLSAAVALGELGS-----------EEAVPLLRELLSDEDPRVRDAAADALGEL---------- 101 (335)
T ss_pred hhHHHHHHHHcCCCHHHHHHHHHHHhhhch-----------HHHHHHHHHHhcCCCHHHHHHHHHHHHcc----------
Confidence 468889999999999999999998766553 23588999999999999999999977776
Q ss_pred HhcCChHHHHHHhc-cCCHHHHHHHHHHHHHhccCCCCchhhhhcCCcHHHHHHhhhcccch----------HHHHHHHH
Q 017249 148 AASGAAPLLVQILH-SGSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDCKKYS----------KFAEKATA 216 (375)
Q Consensus 148 ~~~~~l~~L~~lL~-~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~----------~~~~~a~~ 216 (375)
.....++.|+..+. +++..++..+.++|..+-. ...+..++..+.+..... .++..+..
T Consensus 102 ~~~~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~----------~~a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a~~ 171 (335)
T COG1413 102 GDPEAVPPLVELLENDENEGVRAAAARALGKLGD----------ERALDPLLEALQDEDSGSAAAALDAALLDVRAAAAE 171 (335)
T ss_pred CChhHHHHHHHHHHcCCcHhHHHHHHHHHHhcCc----------hhhhHHHHHHhccchhhhhhhhccchHHHHHHHHHH
Confidence 34567899999998 5889999999999988743 234667777777653110 12233333
Q ss_pred HHHHhhCChhhhHHHhhccCcHHHHHHHhccCChHHHHHHHHHHHHhcccCcHHHHHHHHHcCChHHHHHHhhhCCHHHH
Q 017249 217 LLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQ 296 (375)
Q Consensus 217 ~L~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~~~ 296 (375)
.|..+ .+...++.+..++.+....++..|..+|..+.... ..+.+.+...+.+.+..++
T Consensus 172 ~l~~~-----------~~~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~----------~~~~~~l~~~~~~~~~~vr 230 (335)
T COG1413 172 ALGEL-----------GDPEAIPLLIELLEDEDADVRRAAASALGQLGSEN----------VEAADLLVKALSDESLEVR 230 (335)
T ss_pred HHHHc-----------CChhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch----------hhHHHHHHHHhcCCCHHHH
Confidence 33322 24567888999999988899999999998886553 3456777888888899999
Q ss_pred HHHHHHHHHhhcCC
Q 017249 297 ERARTLLDLLRDTP 310 (375)
Q Consensus 297 ~~A~~~L~~l~~~~ 310 (375)
..++..|..+....
T Consensus 231 ~~~~~~l~~~~~~~ 244 (335)
T COG1413 231 KAALLALGEIGDEE 244 (335)
T ss_pred HHHHHHhcccCcch
Confidence 99988888877665
No 76
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=98.27 E-value=1.7e-06 Score=53.40 Aligned_cols=40 Identities=45% Similarity=0.568 Sum_probs=38.0
Q ss_pred ChhhHHHHHHcCChHHHHHhhcCCChHHHHHHHHHHHHhh
Q 017249 99 NERNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLS 138 (375)
Q Consensus 99 ~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls 138 (375)
+++++..+++.|++|+|+++|++.++++++.|+++|+||+
T Consensus 1 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 1 SPENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp SHHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 4678999999999999999999999999999999999997
No 77
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=98.27 E-value=2.2e-05 Score=73.68 Aligned_cols=263 Identities=12% Similarity=0.096 Sum_probs=181.2
Q ss_pred HHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhccChhhHHHHHHcCChHHHHHhhcC
Q 017249 42 KIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIESSLLALLNLAVRNERNKVKIATAGAIPPLVELLKF 121 (375)
Q Consensus 42 ~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~ 121 (375)
...++.+|..++..- .-.|..+.+..++++|++.|+.++..+.--+...+.|+.-.....+..+.+.|.+..|+.++.+
T Consensus 406 ~~a~~l~LkS~SrSV-~~LRTgL~d~~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~s 484 (743)
T COG5369 406 FVAIVLFLKSMSRSV-TFLRTGLLDYPIVELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMS 484 (743)
T ss_pred HHHHHHHHHHhhHHH-HHHHhhccccchHHHHHHHhcCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhc
Confidence 334555666666655 5567778888899999999999876666777788888887777889999999999999999999
Q ss_pred CChHHHHHHHHHHHHhhccCCCh--hHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCC-C---CchhhhhcC---
Q 017249 122 QNGTLRELAAAAILTLSAAAPNK--PAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTCK-E---NSSPILDAT--- 192 (375)
Q Consensus 122 ~~~~~~~~a~~~L~~Ls~~~~~~--~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~~L~~~~-~---~~~~i~~~g--- 192 (375)
.+..+|....|.+..+..++.+- -.+...-++..+++..+++.-.++..++..|.|++.+. . .+.......
T Consensus 485 KDdaLqans~wvlrHlmyncq~~ekf~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~~ 564 (743)
T COG5369 485 KDDALQANSEWVLRHLMYNCQKNEKFKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPRR 564 (743)
T ss_pred chhhhhhcchhhhhhhhhcCcchhhhhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhcccccccccccceeEEecChHH
Confidence 99999999999999999887643 34456778999999999999999999999999998642 2 233333322
Q ss_pred -CcHHHHHHhhhcccchHHHHHHHHHHHHhhCChhhhHHHhhc-cCcHHHHHHHhc------------------------
Q 017249 193 -AVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNS-DGGILTLVETVE------------------------ 246 (375)
Q Consensus 193 -~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~-~g~v~~Lv~lL~------------------------ 246 (375)
....|++.+...++ ...+..+.+|-+++.+.++.++++.. ...+..+..+|.
T Consensus 565 ylfk~l~~k~e~~np--~~i~~~~yilv~~aa~d~~l~~~V~~q~~~L~~i~eil~e~a~r~~L~pg~~~~~v~~p~s~~ 642 (743)
T COG5369 565 YLFKRLIDKYEENNP--MEILEGCYILVRNAACDDTLDYIVQSQEDMLDSIFEILDEFAGRTPLSPGSKEEHVLLPISYT 642 (743)
T ss_pred HHHHHHHHHHHhcCc--hhhhhhHHHHHHHHhccchHHHHHHhHHHHHHHHHHHHHHHcccCCCCCCCCcccccCcccee
Confidence 33445555555432 23344677777777666655554421 122222222221
Q ss_pred -----------------------------cCChHHHHHHHHHHHHhcccCc--------HHHHHHHHHcCChHHHHHHhh
Q 017249 247 -----------------------------DGSLVSTQHAVGALLSLCQSCR--------DKYRQLILKEGAIPGLLRLTV 289 (375)
Q Consensus 247 -----------------------------~~~~~~~~~a~~~L~~l~~~~~--------~~~~~~l~~~g~v~~L~~ll~ 289 (375)
+++++.--...|.+.|+..... -+-.+.+.+.|.-+.|+....
T Consensus 643 ~v~l~e~~d~f~r~~~~~p~~D~~~~d~~~~NdE~~~agiw~~in~~w~~~~~~vtratveR~~iL~~~G~~e~l~k~q~ 722 (743)
T COG5369 643 IVNLSENSDKFKRLVLTTPHLDNMKKDSTTRNDELSIAGIWIIINLSWKEDGSEVTRATVERIQILCANGIREWLVKIQA 722 (743)
T ss_pred eecccccccccccceecCCCccccccccCCCchhhhhccceEEEecccCccCCccchhhHHHHHHHHHccHHHHHHHHhc
Confidence 0112233344555555433211 122445566788888888888
Q ss_pred hCCHHHHHHHHHHHHHhh
Q 017249 290 EGTFEAQERARTLLDLLR 307 (375)
Q Consensus 290 ~~~~~~~~~A~~~L~~l~ 307 (375)
+.++.+++.+-.+|.++.
T Consensus 723 ~~Sl~vrek~~taL~~l~ 740 (743)
T COG5369 723 KDSLIVREKIGTALENLR 740 (743)
T ss_pred cCcHHHHHHHHHHHHhhh
Confidence 899999999999998864
No 78
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.25 E-value=0.00045 Score=67.72 Aligned_cols=319 Identities=13% Similarity=0.125 Sum_probs=189.9
Q ss_pred hHHHHHHHHhc--CCCHHHHHHHHHHHHHHHhhCChhhHHHHHh-cCChHHHHHhhCCCCHHHHHHHHHHHHHhhccChh
Q 017249 25 ALIEELSDKLI--NGDLETKIEAARDIRKVVKKSSLKTRSEFAA-AGVVQPLVLMLVSPNLDAIESSLLALLNLAVRNER 101 (375)
Q Consensus 25 ~~l~~Lv~~L~--s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~-~g~v~~Lv~~L~~~~~~~~~~a~~~L~~L~~~~~~ 101 (375)
+.+-.++.-.+ .++..++..|..+|.+-.... ..+-..=.+ .=++...++.-.+++.+++..|+.+|..+..-..+
T Consensus 172 ~iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~-~~nF~~E~ern~iMqvvcEatq~~d~~i~~aa~~ClvkIm~LyY~ 250 (859)
T KOG1241|consen 172 DILTAIVQGMRKEETSAAVRLAALNALYNSLEFT-KANFNNEMERNYIMQVVCEATQSPDEEIQVAAFQCLVKIMSLYYE 250 (859)
T ss_pred HHHHHHHhhccccCCchhHHHHHHHHHHHHHHHH-HHhhccHhhhceeeeeeeecccCCcHHHHHHHHHHHHHHHHHHHH
Confidence 34445554444 456788999999998876554 222222122 23466777888899999999999999999864333
Q ss_pred hHHHHHHcCChHHHHHhhcCCChHHHHHHHHHHHHhhccC------------CChh----HH---HhcCChHHHHHHhcc
Q 017249 102 NKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAA------------PNKP----AI---AASGAAPLLVQILHS 162 (375)
Q Consensus 102 ~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~------------~~~~----~i---~~~~~l~~L~~lL~~ 162 (375)
.-..-.....+..-+.-+++.++++...++..-.+++... .+.+ .+ .-.+.+|.|+++|..
T Consensus 251 ~m~~yM~~alfaitl~amks~~deValQaiEFWsticeEEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~k 330 (859)
T KOG1241|consen 251 FMEPYMEQALFAITLAAMKSDNDEVALQAIEFWSTICEEEIDLAIEYGEAVDQGLPPSSKYFARQALQDVVPVLLELLTK 330 (859)
T ss_pred HHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHHHHHHHh
Confidence 3333333334555566778889998888887666666211 0111 11 123678888888865
Q ss_pred CC-------HHHHHHHHHHHHHhccCCCCchhhhhcCCcHHHHHHhhhcc--cchHHHHHHHHHHHHhhCCh--hhhHHH
Q 017249 163 GS-------VQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDCK--KYSKFAEKATALLEILSSSE--EGRIAI 231 (375)
Q Consensus 163 ~~-------~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~~--~~~~~~~~a~~~L~~l~~~~--~~~~~~ 231 (375)
.+ -..-..|-.||.-.+.. +....+++++.++...- ++-.-++.+.-+++.+-..+ ...+.+
T Consensus 331 qde~~d~DdWnp~kAAg~CL~l~A~~-------~~D~Iv~~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~i 403 (859)
T KOG1241|consen 331 QDEDDDDDDWNPAKAAGVCLMLFAQC-------VGDDIVPHVLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPI 403 (859)
T ss_pred CCCCcccccCcHHHHHHHHHHHHHHH-------hcccchhhhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHH
Confidence 31 12344444444444432 22335555555555321 12244677777777666543 334445
Q ss_pred hhccCcHHHHHHHhccCChHHHHHHHHHHHHhcccCcHHHHHHHHHcCChHHHHHHhhhCCHHHHHHHHHHHHHhhcCCh
Q 017249 232 TNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDTPQ 311 (375)
Q Consensus 232 ~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~ 311 (375)
+ .++++.++.++.+++-.++..+.|+|..++.......-........++.++.-+. ..|++-.+++|++-.|.++-.
T Consensus 404 V--~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~-DePrva~N~CWAf~~Laea~~ 480 (859)
T KOG1241|consen 404 V--IQALPSIINLMSDPSLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGLN-DEPRVASNVCWAFISLAEAAY 480 (859)
T ss_pred H--hhhhHHHHHHhcCchhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhh-hCchHHHHHHHHHHHHHHHHH
Confidence 4 5899999999999888889999999999998763221122222344455554443 569999999999999985442
Q ss_pred hhh-------hhhhhHHHHHHHHh---hcCCC-hHHHHHHHHHHHHHHHHHHHH
Q 017249 312 EKR-------LSSSVLEKIVYDIA---ARVDG-ADKAAETAKRLLQDMVQRSME 354 (375)
Q Consensus 312 ~~~-------~~~g~~~~l~~~l~---~~~~g-~~~~~~~a~~~l~~l~~~s~~ 354 (375)
+.. ....+.++++..|. ...|| ....+..|=.+|..|++.|.+
T Consensus 481 eA~~s~~qt~~~t~~y~~ii~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~st~ 534 (859)
T KOG1241|consen 481 EAAVSNGQTDPATPFYEAIIGSLLKVTDRADGNQSNLRSAAYEALMELIKNSTD 534 (859)
T ss_pred HhccCCCCCCccchhHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHcCcH
Confidence 211 11123334444332 11233 233456666777777766443
No 79
>KOG2734 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.23 E-value=0.0012 Score=61.07 Aligned_cols=240 Identities=14% Similarity=0.068 Sum_probs=171.5
Q ss_pred HHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhccCh---------hhHHHHHHcCChHHH
Q 017249 45 AARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIESSLLALLNLAVRNE---------RNKVKIATAGAIPPL 115 (375)
Q Consensus 45 a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~~~~~~~~~a~~~L~~L~~~~~---------~~r~~i~~~g~i~~L 115 (375)
.+.-+.-++..+ .....+++.++|+.|+++|.+.+.++....+..|..|+..+. ..-..+++.++++.|
T Consensus 104 ~IQ~mhvlAt~P--dLYp~lveln~V~slL~LLgHeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaLL 181 (536)
T KOG2734|consen 104 IIQEMHVLATMP--DLYPILVELNAVQSLLELLGHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLALL 181 (536)
T ss_pred HHHHHHhhhcCh--HHHHHHHHhccHHHHHHHhcCCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHHH
Confidence 444555555554 777789999999999999999999999999999999996432 234567778899999
Q ss_pred HHhhcCCChHH------HHHHHHHHHHhhccCC-ChhHHHhcCChHHHHHHhccC--CHHHHHHHHHHHHHhccC-CCCc
Q 017249 116 VELLKFQNGTL------RELAAAAILTLSAAAP-NKPAIAASGAAPLLVQILHSG--SVQGRVDAVTALHYLSTC-KENS 185 (375)
Q Consensus 116 v~lL~~~~~~~------~~~a~~~L~~Ls~~~~-~~~~i~~~~~l~~L~~lL~~~--~~~~~~~a~~~L~~L~~~-~~~~ 185 (375)
++-++.-+..+ ...++..+-|+....+ ....+++.|.+.+|+.-+... -.....+|...|.-+-.+ ++++
T Consensus 182 vqnveRLdEsvkeea~gv~~~L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e~~ 261 (536)
T KOG2734|consen 182 VQNVERLDESVKEEADGVHNTLAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDENR 261 (536)
T ss_pred HHHHHHhhhcchhhhhhhHHHHHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCchhh
Confidence 99886544333 4566777777776544 455667778888888865543 245577888888877755 4577
Q ss_pred hhhhhcCCcHHHHHHhhh----c---ccchHHHHHHHHHHHHhhCChhhhHHHhhccCcHHHHHHHhccCChHHHHHHHH
Q 017249 186 SPILDATAVPPLINLLKD----C---KKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVG 258 (375)
Q Consensus 186 ~~i~~~g~i~~Lv~ll~~----~---~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~ 258 (375)
.....-.++..+++-+.- + .+...+.++...+|+.+...+.++...+. ..+++...-+++. ....+..+++
T Consensus 262 ~~~~~l~GiD~lL~~la~yk~~dP~~~~E~EmmeNLFdcLCs~lm~~~nr~~Fl~-~EGlqLm~Lmlr~-Kk~sr~Salk 339 (536)
T KOG2734|consen 262 KLLGPLDGIDVLLRQLAVYKRHDPATVDEEEMMENLFDCLCSLLMAPANRERFLK-GEGLQLMNLMLRE-KKVSRGSALK 339 (536)
T ss_pred hhhcCcccHHHHHhhcchhhccCCCCcCHHHHHHHHHHHHHHHhcChhhhhhhhc-cccHHHHHHHHHH-HHHhhhhHHH
Confidence 777777888888775542 1 11335677788888888889999999994 5566655544544 5567788999
Q ss_pred HHHHhcccCc-HHHHHHHHHcCChHHHHHHh
Q 017249 259 ALLSLCQSCR-DKYRQLILKEGAIPGLLRLT 288 (375)
Q Consensus 259 ~L~~l~~~~~-~~~~~~l~~~g~v~~L~~ll 288 (375)
+|-....+.. ...+..+++..++....-+.
T Consensus 340 vLd~am~g~~gt~~C~kfVe~lGLrtiF~~F 370 (536)
T KOG2734|consen 340 VLDHAMFGPEGTPNCNKFVEILGLRTIFPLF 370 (536)
T ss_pred HHHHHHhCCCchHHHHHHHHHHhHHHHHHHH
Confidence 9988777653 25677788877777666533
No 80
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.19 E-value=0.00043 Score=65.70 Aligned_cols=313 Identities=14% Similarity=0.121 Sum_probs=194.2
Q ss_pred HHHHHHHHHHHHHHhhCChhhHH-HHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhccChhhHHHHHH-cCChHHHHH
Q 017249 40 ETKIEAARDIRKVVKKSSLKTRS-EFAAAGVVQPLVLMLVSPNLDAIESSLLALLNLAVRNERNKVKIAT-AGAIPPLVE 117 (375)
Q Consensus 40 ~~~~~a~~~l~~l~~~~~~~~~~-~~~~~g~v~~Lv~~L~~~~~~~~~~a~~~L~~L~~~~~~~r~~i~~-~g~i~~Lv~ 117 (375)
.....++..+-.+.++- ...+. .|-=.+.+|.|-+.+...++..|...+.-|..|-. .+-...+-- ...++-|+.
T Consensus 139 ~~V~~~aeLLdRLikdI-Vte~~~tFsL~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds--~P~~~m~~yl~~~ldGLf~ 215 (675)
T KOG0212|consen 139 QNVRGGAELLDRLIKDI-VTESASTFSLPEFIPLLRERIYVINPMTRQFLVSWLYVLDS--VPDLEMISYLPSLLDGLFN 215 (675)
T ss_pred cccccHHHHHHHHHHHh-ccccccccCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhc--CCcHHHHhcchHHHHHHHH
Confidence 33445666666665554 11111 23223566666667777788888888887777754 233333332 567788999
Q ss_pred hhcCCChHHHHHHHHHHHHhhccCCChhHH-HhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCCCCchhhhhcCCcHH
Q 017249 118 LLKFQNGTLRELAAAAILTLSAAAPNKPAI-AASGAAPLLVQILHSGSVQGRVDAVTALHYLSTCKENSSPILDATAVPP 196 (375)
Q Consensus 118 lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i-~~~~~l~~L~~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~ 196 (375)
+|+.++++++..+=.++.++-..-.+.+.. .-...++.++.-+.++++.++..|+.-|.....-+.......-+|.+..
T Consensus 216 ~LsD~s~eVr~~~~t~l~~fL~eI~s~P~s~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~l~~~s~il~~ 295 (675)
T KOG0212|consen 216 MLSDSSDEVRTLTDTLLSEFLAEIRSSPSSMDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRDLLLYLSGILTA 295 (675)
T ss_pred HhcCCcHHHHHHHHHHHHHHHHHHhcCccccCcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcchhhhhhhhhhh
Confidence 999999999987777777765433333333 3356788899999999999998887777766554444444444566666
Q ss_pred HHHHhhhcccchHHHHHH---HHHHHHhhCChhhhHHHhhccCcHHHHHHHhccCChHHHHHHHHHHHHhcccCcHHHHH
Q 017249 197 LINLLKDCKKYSKFAEKA---TALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQ 273 (375)
Q Consensus 197 Lv~ll~~~~~~~~~~~~a---~~~L~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~ 273 (375)
++..+.+... ....+.+ -..+..++..+..... +.-...+..|..++.+.....+-.++..+..+-...+.+ -
T Consensus 296 iLpc~s~~e~-~~i~~~a~~~n~~l~~l~s~~~~~~~-id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p~q--l 371 (675)
T KOG0212|consen 296 ILPCLSDTEE-MSIKEYAQMVNGLLLKLVSSERLKEE-IDYGSIIEVLTKYLSDDREETRIAVLNWIILLYHKAPGQ--L 371 (675)
T ss_pred cccCCCCCcc-ccHHHHHHHHHHHHHHHHhhhhhccc-cchHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhCcch--h
Confidence 6666665432 1233322 2234445555544444 323346788889999999999999999998887765322 1
Q ss_pred HHHHcCChHHHHHHhhhCCHHHHHHHHHHHHHhhcCChhhhhhhhhHHHHHHHHhhcCCChHHHHHHHHHHHHHHH----
Q 017249 274 LILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDTPQEKRLSSSVLEKIVYDIAARVDGADKAAETAKRLLQDMV---- 349 (375)
Q Consensus 274 ~l~~~g~v~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~~~~~~~g~~~~l~~~l~~~~~g~~~~~~~a~~~l~~l~---- 349 (375)
........+.|+.-+.+.+..+-..+..+|+.++.++... +..+-+...|..-...+.-...++.=+++.|.
T Consensus 372 ~~h~~~if~tLL~tLsd~sd~vvl~~L~lla~i~~s~~~~----~~~~fl~sLL~~f~e~~~~l~~Rg~lIIRqlC~lL~ 447 (675)
T KOG0212|consen 372 LVHNDSIFLTLLKTLSDRSDEVVLLALSLLASICSSSNSP----NLRKFLLSLLEMFKEDTKLLEVRGNLIIRQLCLLLN 447 (675)
T ss_pred hhhccHHHHHHHHhhcCchhHHHHHHHHHHHHHhcCcccc----cHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHhC
Confidence 2223668899999999999999999999999999887432 22332222222212222223344444444443
Q ss_pred HHHHHHhHHHHHHH
Q 017249 350 QRSMELSMTRIQQR 363 (375)
Q Consensus 350 ~~s~~~~~~~~~~~ 363 (375)
..-.+..+..|+.|
T Consensus 448 aE~IYr~~a~ILe~ 461 (675)
T KOG0212|consen 448 AERIYRSIADILER 461 (675)
T ss_pred HHHHHHHHHHHHhc
Confidence 23455555555554
No 81
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=98.14 E-value=0.00054 Score=64.07 Aligned_cols=249 Identities=15% Similarity=0.054 Sum_probs=169.5
Q ss_pred HHHHHhhCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhccChhhHHHHHHcCChHHHHHhhcCC--ChHH
Q 017249 49 IRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIESSLLALLNLAVRNERNKVKIATAGAIPPLVELLKFQ--NGTL 126 (375)
Q Consensus 49 l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~--~~~~ 126 (375)
|..+.+.. +..+..+.-....+.+..++-+++.+++-.+.++++.+.. ++..-..+.+.+.--.++.-|... +..-
T Consensus 7 Lv~l~~~~-p~l~~~~~~~~~~~~i~~~lL~~~~~vraa~yRilRy~i~-d~~~l~~~~~l~id~~ii~SL~~~~~~~~E 84 (371)
T PF14664_consen 7 LVDLLKRH-PTLKYDLVLSFFGERIQCMLLSDSKEVRAAGYRILRYLIS-DEESLQILLKLHIDIFIIRSLDRDNKNDVE 84 (371)
T ss_pred HHHHHHhC-chhhhhhhHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHc-CHHHHHHHHHcCCchhhHhhhcccCCChHH
Confidence 34444444 4555554444455555555555559999999999999998 566777777777655666666554 4556
Q ss_pred HHHHHHHHHHhhccCCChhHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCCCCchhhhhcCCcHHHHHHhhhccc
Q 017249 127 RELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDCKK 206 (375)
Q Consensus 127 ~~~a~~~L~~Ls~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~~~ 206 (375)
|++|+..+..+.....+... ...+.+..++.+..+.+...+..|+.+|+.|+..+ ...+...|++..|++.+.++..
T Consensus 85 R~QALkliR~~l~~~~~~~~-~~~~vvralvaiae~~~D~lr~~cletL~El~l~~--P~lv~~~gG~~~L~~~l~d~~~ 161 (371)
T PF14664_consen 85 REQALKLIRAFLEIKKGPKE-IPRGVVRALVAIAEHEDDRLRRICLETLCELALLN--PELVAECGGIRVLLRALIDGSF 161 (371)
T ss_pred HHHHHHHHHHHHHhcCCccc-CCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhC--HHHHHHcCCHHHHHHHHHhccH
Confidence 88999999988776443322 25678899999999999999999999999998653 3455678999999999988543
Q ss_pred chHHHHHHHHHHHHhhCChhhhHHHhhccCcHHHHHHHhccC-------Ch--HHHHHHHHHHHHhc-ccCcHHHHHHHH
Q 017249 207 YSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDG-------SL--VSTQHAVGALLSLC-QSCRDKYRQLIL 276 (375)
Q Consensus 207 ~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~-------~~--~~~~~a~~~L~~l~-~~~~~~~~~~l~ 276 (375)
.+.+..+.++..+-.+|..|+.+.. .--+..++.-+.+. +. ..-..+..++..+- ...+ .-.+.
T Consensus 162 --~~~~~l~~~lL~lLd~p~tR~yl~~-~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~G---Ll~l~ 235 (371)
T PF14664_consen 162 --SISESLLDTLLYLLDSPRTRKYLRP-GFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPG---LLYLS 235 (371)
T ss_pred --hHHHHHHHHHHHHhCCcchhhhhcC-CccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCc---eeeee
Confidence 3678888889999999999998873 33355555444322 11 12223333333332 2221 11111
Q ss_pred H--cCChHHHHHHhhhCCHHHHHHHHHHHHHhhc
Q 017249 277 K--EGAIPGLLRLTVEGTFEAQERARTLLDLLRD 308 (375)
Q Consensus 277 ~--~g~v~~L~~ll~~~~~~~~~~A~~~L~~l~~ 308 (375)
. ..++..|+..+..+++++|+....++.-+-+
T Consensus 236 ~~~~~~lksLv~~L~~p~~~ir~~Ildll~dllr 269 (371)
T PF14664_consen 236 MNDFRGLKSLVDSLRLPNPEIRKAILDLLFDLLR 269 (371)
T ss_pred cCCchHHHHHHHHHcCCCHHHHHHHHHHHHHHHC
Confidence 1 2578889999999999999999997776654
No 82
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=98.12 E-value=0.0004 Score=61.49 Aligned_cols=229 Identities=10% Similarity=-0.010 Sum_probs=154.6
Q ss_pred CCCCHHHHHHHHHHHHHhhccChhhHHHHH-HcCChHHHHHhhcCC--ChHHHHHHHHHHHHhhccCCChhHHHh-cCCh
Q 017249 78 VSPNLDAIESSLLALLNLAVRNERNKVKIA-TAGAIPPLVELLKFQ--NGTLRELAAAAILTLSAAAPNKPAIAA-SGAA 153 (375)
Q Consensus 78 ~~~~~~~~~~a~~~L~~L~~~~~~~r~~i~-~~g~i~~Lv~lL~~~--~~~~~~~a~~~L~~Ls~~~~~~~~i~~-~~~l 153 (375)
..-++-.+--|++++.++.. .++.|..+- +...-..++..+++. ...++.+.+-++|-++.++...+.+-. ...+
T Consensus 159 Q~i~~lTrlfav~cl~~l~~-~~e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf~~~~aqdi~K~~dli 237 (432)
T COG5231 159 QLIDFLTRLFAVSCLSNLEF-DVEKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTFSKECAQDIDKMDDLI 237 (432)
T ss_pred HHHHHHHHHHHHHHHhhhhh-hHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 33344567889999999998 466665544 455667888888765 678999999999999988776544432 3456
Q ss_pred HHHHHHhccC-CHHHHHHHHHHHHHhccC-C-CCchhhhhcCCcHHHHHHhhhcc-cchHHHHHHHHHH-----------
Q 017249 154 PLLVQILHSG-SVQGRVDAVTALHYLSTC-K-ENSSPILDATAVPPLINLLKDCK-KYSKFAEKATALL----------- 218 (375)
Q Consensus 154 ~~L~~lL~~~-~~~~~~~a~~~L~~L~~~-~-~~~~~i~~~g~i~~Lv~ll~~~~-~~~~~~~~a~~~L----------- 218 (375)
..|+.+.+.. ...+.+-+++.+.|++.. + +....+.-.|-+.+.+++|.... .++.+....-.+=
T Consensus 238 ~dli~iVk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~i~s~l~~~~k~l~ 317 (432)
T COG5231 238 NDLIAIVKERAKEKVLRLCCGIVANVLDKSPKGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIERIRSRLVQNTKKLC 317 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhhhhhh
Confidence 6777777765 356788899999999873 2 44555555565666666665432 1222221111110
Q ss_pred ------H-----HhhCChh---------hhHHHhh-ccCcHHHHHHHhccCChH-HHHHHHHHHHHhcccCcHHHHHHHH
Q 017249 219 ------E-----ILSSSEE---------GRIAITN-SDGGILTLVETVEDGSLV-STQHAVGALLSLCQSCRDKYRQLIL 276 (375)
Q Consensus 219 ------~-----~l~~~~~---------~~~~~~~-~~g~v~~Lv~lL~~~~~~-~~~~a~~~L~~l~~~~~~~~~~~l~ 276 (375)
. -++-+|. |...+.. ....+..|.++++...+. .-..||.-+..+.... |+.+..+.
T Consensus 318 ~fD~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~-PE~~~vl~ 396 (432)
T COG5231 318 IFDNYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSNNPNTWICVACSDIFQLVRAS-PEINAVLS 396 (432)
T ss_pred HHHHHHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhC-chHHHHHH
Confidence 0 1122222 2233331 224578888999876554 4456777788877776 68889999
Q ss_pred HcCChHHHHHHhhhCCHHHHHHHHHHHHHhhc
Q 017249 277 KEGAIPGLLRLTVEGTFEAQERARTLLDLLRD 308 (375)
Q Consensus 277 ~~g~v~~L~~ll~~~~~~~~~~A~~~L~~l~~ 308 (375)
+.|+=+.++.++.+++++++.+|..++..|-.
T Consensus 397 Kyg~k~~im~L~nh~d~~VkfeAl~a~q~~i~ 428 (432)
T COG5231 397 KYGVKEIIMNLINHDDDDVKFEALQALQTCIS 428 (432)
T ss_pred HhhhHHHHHHHhcCCCchhhHHHHHHHHHHHh
Confidence 99999999999999999999999999887743
No 83
>KOG2734 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.09 E-value=0.0017 Score=59.97 Aligned_cols=249 Identities=14% Similarity=0.094 Sum_probs=182.7
Q ss_pred hhhHHHHHhhHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhC----C----hhhHHHHHhcCChHHHHHhhCCCC----
Q 017249 14 QEEEAWNQRKQALIEELSDKLINGDLETKIEAARDIRKVVKKS----S----LKTRSEFAAAGVVQPLVLMLVSPN---- 81 (375)
Q Consensus 14 ~~~~~~~~~~~~~l~~Lv~~L~s~~~~~~~~a~~~l~~l~~~~----~----~~~~~~~~~~g~v~~Lv~~L~~~~---- 81 (375)
-+.--..+.+-++++.|+.+|...+.++....+..+..+...+ + +...+.+++.++++.|++.+..=+
T Consensus 114 ~PdLYp~lveln~V~slL~LLgHeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaLLvqnveRLdEsvk 193 (536)
T KOG2734|consen 114 MPDLYPILVELNAVQSLLELLGHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLALLVQNVERLDESVK 193 (536)
T ss_pred ChHHHHHHHHhccHHHHHHHhcCCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHHHHHHHHHhhhcch
Confidence 3444456778889999999999999999999999999997543 1 245667788899999998775432
Q ss_pred --HHHHHHHHHHHHHhhccChhhHHHHHHcCChHHHHHhhcCC--ChHHHHHHHHHHHHhhccCC-ChhHHHhcCChHHH
Q 017249 82 --LDAIESSLLALLNLAVRNERNKVKIATAGAIPPLVELLKFQ--NGTLRELAAAAILTLSAAAP-NKPAIAASGAAPLL 156 (375)
Q Consensus 82 --~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~--~~~~~~~a~~~L~~Ls~~~~-~~~~i~~~~~l~~L 156 (375)
..-...++..+-|+..-.+.....+++.|.+..|+.-+... -..-...|..+|.-+..+.. ++.....-.++..+
T Consensus 194 eea~gv~~~L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e~~~~~~~l~GiD~l 273 (536)
T KOG2734|consen 194 EEADGVHNTLAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDENRKLLGPLDGIDVL 273 (536)
T ss_pred hhhhhhHHHHHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCchhhhhhcCcccHHHH
Confidence 34466778888888887888888888999888888754332 34456788888888877754 77777888999998
Q ss_pred HHHhc---cCC------HHHHHHHHHHHHHhccCCCCchhhhhcCCcHHHHHHhhhcccchHHHHHHHHHHHHhhCCh--
Q 017249 157 VQILH---SGS------VQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSE-- 225 (375)
Q Consensus 157 ~~lL~---~~~------~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~~~-- 225 (375)
++-+. ..+ .+..++...+|+.+...+.++..++...+++...-+++... ..+..++++|-....++
T Consensus 274 L~~la~yk~~dP~~~~E~EmmeNLFdcLCs~lm~~~nr~~Fl~~EGlqLm~Lmlr~Kk---~sr~SalkvLd~am~g~~g 350 (536)
T KOG2734|consen 274 LRQLAVYKRHDPATVDEEEMMENLFDCLCSLLMAPANRERFLKGEGLQLMNLMLREKK---VSRGSALKVLDHAMFGPEG 350 (536)
T ss_pred HhhcchhhccCCCCcCHHHHHHHHHHHHHHHhcChhhhhhhhccccHHHHHHHHHHHH---HhhhhHHHHHHHHHhCCCc
Confidence 88762 122 35677888888888888999999999888887777776642 34567888888776654
Q ss_pred -hhhHHHhhccCcHHHHHHHhc-c---------CChHHHHHHHHHHHHhccc
Q 017249 226 -EGRIAITNSDGGILTLVETVE-D---------GSLVSTQHAVGALLSLCQS 266 (375)
Q Consensus 226 -~~~~~~~~~~g~v~~Lv~lL~-~---------~~~~~~~~a~~~L~~l~~~ 266 (375)
+++...+ +.++...++.+.. . .....-++.+.+|+.+-.+
T Consensus 351 t~~C~kfV-e~lGLrtiF~~FMk~p~k~~~~~~t~~e~eEhv~siiaSl~~~ 401 (536)
T KOG2734|consen 351 TPNCNKFV-EILGLRTIFPLFMKTPLKRKKRKISADEHEEHVCSILASLLRN 401 (536)
T ss_pred hHHHHHHH-HHHhHHHHHHHHhhCccchhcccCcHHHHHHHHHHHHHHHHHh
Confidence 5666777 5678887776653 1 1244556777777766553
No 84
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=98.07 E-value=0.00014 Score=58.60 Aligned_cols=131 Identities=14% Similarity=0.156 Sum_probs=106.5
Q ss_pred hHHHhcCChHHHHHHhccCC------HHHHHHHHHHHHHhccCCCCchhhhhcCCcHHHHHHhhhcccchHHHHHHHHHH
Q 017249 145 PAIAASGAAPLLVQILHSGS------VQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALL 218 (375)
Q Consensus 145 ~~i~~~~~l~~L~~lL~~~~------~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L 218 (375)
..+...+|++.|++++.++. ......++.++..|....-..+...+...+..++..+.....+..+...++.+|
T Consensus 5 ~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLaIL 84 (160)
T PF11841_consen 5 QEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSWDTLSDSFIKKIASYVNSSAMDASILQRSLAIL 84 (160)
T ss_pred HHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCchhhccHHHHHHHHHHHccccccchHHHHHHHHH
Confidence 34567899999999998876 377888999999999887666677788899999999987665678889999999
Q ss_pred HHhhCChhhhHHHhhccCcHHHHHHHhccCChHHHHHHHHHHHHhcccCcHHHHHHH
Q 017249 219 EILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLI 275 (375)
Q Consensus 219 ~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l 275 (375)
.++..+.......+...=-++.|+.+|...++.++.+|+..+-.|....++.-++.+
T Consensus 85 Es~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA~~~~r~~i 141 (160)
T PF11841_consen 85 ESIVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLKADDSKRKEI 141 (160)
T ss_pred HHHHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCChHHHHHH
Confidence 999987777555664566789999999999999999999999888776654444444
No 85
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=98.04 E-value=0.0013 Score=61.16 Aligned_cols=187 Identities=29% Similarity=0.290 Sum_probs=137.0
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhccChhhHH
Q 017249 25 ALIEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIESSLLALLNLAVRNERNKV 104 (375)
Q Consensus 25 ~~l~~Lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~~~~~~~~~a~~~L~~L~~~~~~~r~ 104 (375)
..++.++..+.+.++.++..|+..+..+.... .++.+..+|.+.++.++..++.+|+.+-..
T Consensus 43 ~~~~~~~~~l~~~~~~vr~~aa~~l~~~~~~~------------av~~l~~~l~d~~~~vr~~a~~aLg~~~~~------ 104 (335)
T COG1413 43 EAADELLKLLEDEDLLVRLSAAVALGELGSEE------------AVPLLRELLSDEDPRVRDAAADALGELGDP------ 104 (335)
T ss_pred hhHHHHHHHHcCCCHHHHHHHHHHHhhhchHH------------HHHHHHHHhcCCCHHHHHHHHHHHHccCCh------
Confidence 46778888888888888888888865543322 589999999999999999999988877542
Q ss_pred HHHHcCChHHHHHhhc-CCChHHHHHHHHHHHHhhccCCChhHHHhcCChHHHHHHhccCCH------------HHHHHH
Q 017249 105 KIATAGAIPPLVELLK-FQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHSGSV------------QGRVDA 171 (375)
Q Consensus 105 ~i~~~g~i~~Lv~lL~-~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~l~~L~~lL~~~~~------------~~~~~a 171 (375)
..++.|+.++. +.+..+|..++.+|..+-. ...+..++..+.+... .++..+
T Consensus 105 -----~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~----------~~a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a 169 (335)
T COG1413 105 -----EAVPPLVELLENDENEGVRAAAARALGKLGD----------ERALDPLLEALQDEDSGSAAAALDAALLDVRAAA 169 (335)
T ss_pred -----hHHHHHHHHHHcCCcHhHHHHHHHHHHhcCc----------hhhhHHHHHHhccchhhhhhhhccchHHHHHHHH
Confidence 24788999998 5799999999999998733 4447888888877652 234444
Q ss_pred HHHHHHhccCCCCchhhhhcCCcHHHHHHhhhcccchHHHHHHHHHHHHhhCChhhhHHHhhccCcHHHHHHHhccCChH
Q 017249 172 VTALHYLSTCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLV 251 (375)
Q Consensus 172 ~~~L~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~ 251 (375)
...|..+ .....++.+...+.+.. ..++..+...|..+.... ....+.+...+.+.+..
T Consensus 170 ~~~l~~~----------~~~~~~~~l~~~l~~~~--~~vr~~Aa~aL~~~~~~~---------~~~~~~l~~~~~~~~~~ 228 (335)
T COG1413 170 AEALGEL----------GDPEAIPLLIELLEDED--ADVRRAAASALGQLGSEN---------VEAADLLVKALSDESLE 228 (335)
T ss_pred HHHHHHc----------CChhhhHHHHHHHhCch--HHHHHHHHHHHHHhhcch---------hhHHHHHHHHhcCCCHH
Confidence 4444433 33457778888888763 367777877777665443 24667788888888888
Q ss_pred HHHHHHHHHHHhcc
Q 017249 252 STQHAVGALLSLCQ 265 (375)
Q Consensus 252 ~~~~a~~~L~~l~~ 265 (375)
++..++..|..+-.
T Consensus 229 vr~~~~~~l~~~~~ 242 (335)
T COG1413 229 VRKAALLALGEIGD 242 (335)
T ss_pred HHHHHHHHhcccCc
Confidence 88888888877644
No 86
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=98.00 E-value=0.0019 Score=62.31 Aligned_cols=231 Identities=16% Similarity=0.146 Sum_probs=141.2
Q ss_pred CCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhccChhhHHHHHHcCChHHH
Q 017249 36 NGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIESSLLALLNLAVRNERNKVKIATAGAIPPL 115 (375)
Q Consensus 36 s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~L 115 (375)
+..+.++..|..+...+...-+....+ -.++.++.-+..........++..|+.++. .....-.......+|.+
T Consensus 227 d~~~~Vr~Aa~~a~kai~~~~~~~aVK-----~llpsll~~l~~~kWrtK~aslellg~m~~-~ap~qLs~~lp~iiP~l 300 (569)
T KOG1242|consen 227 DKINKVREAAVEAAKAIMRCLSAYAVK-----LLLPSLLGSLLEAKWRTKMASLELLGAMAD-CAPKQLSLCLPDLIPVL 300 (569)
T ss_pred ccchhhhHHHHHHHHHHHHhcCcchhh-----HhhhhhHHHHHHHhhhhHHHHHHHHHHHHH-hchHHHHHHHhHhhHHH
Confidence 445666666555555544333111111 124555544444466778899999998887 44555666678899999
Q ss_pred HHhhcCCChHHHHHHHHHHHHhhccCCChhHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCCCCchhhhhcCCcH
Q 017249 116 VELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTCKENSSPILDATAVP 195 (375)
Q Consensus 116 v~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~ 195 (375)
.+.|-+..+++++.+..++..+..--+|... ...+|.|++.+.+++..+.. +...|..=+. ...++...+.
T Consensus 301 sevl~DT~~evr~a~~~~l~~~~svidN~dI---~~~ip~Lld~l~dp~~~~~e-~~~~L~~ttF-----V~~V~~psLa 371 (569)
T KOG1242|consen 301 SEVLWDTKPEVRKAGIETLLKFGSVIDNPDI---QKIIPTLLDALADPSCYTPE-CLDSLGATTF-----VAEVDAPSLA 371 (569)
T ss_pred HHHHccCCHHHHHHHHHHHHHHHHhhccHHH---HHHHHHHHHHhcCcccchHH-HHHhhcceee-----eeeecchhHH
Confidence 9999999999999999999999877666552 34578888888887644322 2222221111 1112233444
Q ss_pred HHHHHhhhccc--chHHHHHHHHHHHHhhCChhhhHHHhhccCcHHHHHH----HhccCChHHHHHHHHHHHHhcccCcH
Q 017249 196 PLINLLKDCKK--YSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVE----TVEDGSLVSTQHAVGALLSLCQSCRD 269 (375)
Q Consensus 196 ~Lv~ll~~~~~--~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~Lv~----lL~~~~~~~~~~a~~~L~~l~~~~~~ 269 (375)
.++-++..+.. +..+.+.+..++.|+|.--++...+. ..++.|++ .+.+..|++|..+.++|+.+-.....
T Consensus 372 lmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~la---pfl~~Llp~lk~~~~d~~PEvR~vaarAL~~l~e~~g~ 448 (569)
T KOG1242|consen 372 LMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDLA---PFLPSLLPGLKENLDDAVPEVRAVAARALGALLERLGE 448 (569)
T ss_pred HHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHHh---hhHHHHhhHHHHHhcCCChhHHHHHHHHHHHHHHHHHh
Confidence 44545443211 22456788999999997654444433 34555554 44556799999999999877654321
Q ss_pred HHHHHHHHcCChHHHHHHhh
Q 017249 270 KYRQLILKEGAIPGLLRLTV 289 (375)
Q Consensus 270 ~~~~~l~~~g~v~~L~~ll~ 289 (375)
..+ .+.+|.+.+...
T Consensus 449 ---~~f--~d~~p~l~e~~~ 463 (569)
T KOG1242|consen 449 ---VSF--DDLIPELSETLT 463 (569)
T ss_pred ---hcc--cccccHHHHhhc
Confidence 111 555566665553
No 87
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=97.99 E-value=0.00047 Score=69.76 Aligned_cols=224 Identities=16% Similarity=0.102 Sum_probs=167.5
Q ss_pred HHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhccChhhHHHHHHcCChHHHHHhhc
Q 017249 41 TKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIESSLLALLNLAVRNERNKVKIATAGAIPPLVELLK 120 (375)
Q Consensus 41 ~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~ 120 (375)
-+..|+..|..+..-. +=....-..-|+.|..+++|.++-.+++.--+-+=..+-.-++.++..+++.++-..++++|.
T Consensus 486 HRlRAL~LL~RFLDlG-pWAV~LaLsVGIFPYVLKLLQS~a~ELrpiLVFIWAKILAvD~SCQ~dLvKe~g~~YF~~vL~ 564 (1387)
T KOG1517|consen 486 HRLRALVLLARFLDLG-PWAVDLALSVGIFPYVLKLLQSSARELRPILVFIWAKILAVDPSCQADLVKENGYKYFLQVLD 564 (1387)
T ss_pred HHHHHHHHHHHHhccc-hhhhhhhhccchHHHHHHHhccchHhhhhhHHHHHHHHHhcCchhHHHHHhccCceeEEEEec
Confidence 3455777777776666 334444556699999999999998887776555555544446889999999999999999997
Q ss_pred C-C--ChHHHHHHHHHHHHhhccCC-ChhHHHhcCChHHHHHHhccC-CHHHHHHHHHHHHHhccC-CCCchhhhhcCCc
Q 017249 121 F-Q--NGTLRELAAAAILTLSAAAP-NKPAIAASGAAPLLVQILHSG-SVQGRVDAVTALHYLSTC-KENSSPILDATAV 194 (375)
Q Consensus 121 ~-~--~~~~~~~a~~~L~~Ls~~~~-~~~~i~~~~~l~~L~~lL~~~-~~~~~~~a~~~L~~L~~~-~~~~~~i~~~g~i 194 (375)
. . +++-+..|+.+|..+..+-. ++......+.+..-+..|.++ .+-.+..++-+|..|-.+ ++.+..-.+.++.
T Consensus 565 ~~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~Ah 644 (1387)
T KOG1517|consen 565 PSQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAH 644 (1387)
T ss_pred CcCCCCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHH
Confidence 7 3 56788888889999887744 677777888899888999885 577899999999999866 4566666678999
Q ss_pred HHHHHHhhhcccchHHHHHHHHHHHHhhCC-----hhhhHHH-----------hhccCcH---HHHHHHhccCChHHHHH
Q 017249 195 PPLINLLKDCKKYSKFAEKATALLEILSSS-----EEGRIAI-----------TNSDGGI---LTLVETVEDGSLVSTQH 255 (375)
Q Consensus 195 ~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~~-----~~~~~~~-----------~~~~g~v---~~Lv~lL~~~~~~~~~~ 255 (375)
+.|..+|.++ .+.++.+|..+|+.+-.+ ++....+ ..+.-.. ..++.+++++++.++.+
T Consensus 645 ekL~~~LsD~--vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vsdgsplvr~e 722 (1387)
T KOG1517|consen 645 EKLILLLSDP--VPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMSLLALVSDGSPLVRTE 722 (1387)
T ss_pred HHHHHHhcCc--cHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHhccchHHHHH
Confidence 9999999986 457888899999877653 2221111 1122222 26777788999999999
Q ss_pred HHHHHHHhcccC
Q 017249 256 AVGALLSLCQSC 267 (375)
Q Consensus 256 a~~~L~~l~~~~ 267 (375)
.+.+|..+..+.
T Consensus 723 v~v~ls~~~~g~ 734 (1387)
T KOG1517|consen 723 VVVALSHFVVGY 734 (1387)
T ss_pred HHHHHHHHHHhh
Confidence 999998887765
No 88
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.98 E-value=4.3e-05 Score=55.91 Aligned_cols=86 Identities=27% Similarity=0.306 Sum_probs=69.3
Q ss_pred HHHHHHHh-cCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhccChhhHHH
Q 017249 27 IEELSDKL-INGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIESSLLALLNLAVRNERNKVK 105 (375)
Q Consensus 27 l~~Lv~~L-~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~~~~~~~~~a~~~L~~L~~~~~~~r~~ 105 (375)
++.|++.| +++++.++..++++|.++-.. .+++.|+++++++++.++..|+++|+.+-.
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~~~------------~~~~~L~~~l~d~~~~vr~~a~~aL~~i~~-------- 60 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELGDP------------EAIPALIELLKDEDPMVRRAAARALGRIGD-------- 60 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCTHH------------HHHHHHHHHHTSSSHHHHHHHHHHHHCCHH--------
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcCCH------------hHHHHHHHHHcCCCHHHHHHHHHHHHHhCC--------
Confidence 57899999 789999999999999854211 238999999999999999999999998842
Q ss_pred HHHcCChHHHHHhhcCC-ChHHHHHHHHHHH
Q 017249 106 IATAGAIPPLVELLKFQ-NGTLRELAAAAIL 135 (375)
Q Consensus 106 i~~~g~i~~Lv~lL~~~-~~~~~~~a~~~L~ 135 (375)
..+++.|.+++.+. +..++..|+.+|.
T Consensus 61 ---~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 61 ---PEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp ---HHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 33788999998876 5566888888764
No 89
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=97.98 E-value=0.0007 Score=68.58 Aligned_cols=221 Identities=16% Similarity=0.103 Sum_probs=157.6
Q ss_pred HHHHHHHHhhcc-CCChhHH---HhcCChHHHHHHhccCCHHHHHHHHHHHHH-hccCCCCchhhhhcCCcHHHHHHhhh
Q 017249 129 LAAAAILTLSAA-APNKPAI---AASGAAPLLVQILHSGSVQGRVDAVTALHY-LSTCKENSSPILDATAVPPLINLLKD 203 (375)
Q Consensus 129 ~a~~~L~~Ls~~-~~~~~~i---~~~~~l~~L~~lL~~~~~~~~~~a~~~L~~-L~~~~~~~~~i~~~g~i~~Lv~ll~~ 203 (375)
+-+.+|.-|+.. +-+.+.+ ..-|+.|.++++|+++..+.+...+-.=.. |+.++.++..+++.++-...++++..
T Consensus 486 HRlRAL~LL~RFLDlGpWAV~LaLsVGIFPYVLKLLQS~a~ELrpiLVFIWAKILAvD~SCQ~dLvKe~g~~YF~~vL~~ 565 (1387)
T KOG1517|consen 486 HRLRALVLLARFLDLGPWAVDLALSVGIFPYVLKLLQSSARELRPILVFIWAKILAVDPSCQADLVKENGYKYFLQVLDP 565 (1387)
T ss_pred HHHHHHHHHHHHhccchhhhhhhhccchHHHHHHHhccchHhhhhhHHHHHHHHHhcCchhHHHHHhccCceeEEEEecC
Confidence 334445555443 2244444 367999999999999987766555433333 55667777788888777777777776
Q ss_pred -cccchHHHHHHHHHHHHhhC-ChhhhHHHhhccCcHHHHHHHhccC-ChHHHHHHHHHHHHhcccCcHHHHHHHHHcCC
Q 017249 204 -CKKYSKFAEKATALLEILSS-SEEGRIAITNSDGGILTLVETVEDG-SLVSTQHAVGALLSLCQSCRDKYRQLILKEGA 280 (375)
Q Consensus 204 -~~~~~~~~~~a~~~L~~l~~-~~~~~~~~~~~~g~v~~Lv~lL~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~g~ 280 (375)
...++.-+..|..+|..++. .+.+++..+ +.+.+...+.+|.++ .+.++..++-+|..|-.+- ++.++.=.+.++
T Consensus 566 ~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl-~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~-~~Arw~G~r~~A 643 (1387)
T KOG1517|consen 566 SQAIPPEQRTMAAFVLAVIVRNFKLGQKACL-NGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDY-DEARWSGRRDNA 643 (1387)
T ss_pred cCCCCHHHHHHHHHHHHHHHcccchhHHHhc-cccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhc-chhhhccccccH
Confidence 33333556668888988886 578888888 578888888888875 6889999999999998876 467777788999
Q ss_pred hHHHHHHhhhCCHHHHHHHHHHHHHhhcCC----hh--------------hhhhhh-hHHHHHHHHhhcCCChHHHHHHH
Q 017249 281 IPGLLRLTVEGTFEAQERARTLLDLLRDTP----QE--------------KRLSSS-VLEKIVYDIAARVDGADKAAETA 341 (375)
Q Consensus 281 v~~L~~ll~~~~~~~~~~A~~~L~~l~~~~----~~--------------~~~~~g-~~~~l~~~l~~~~~g~~~~~~~a 341 (375)
.+.|..++.+.-|+||-+|+.+|..+-+.. ++ +...+. +...++..+..-.+|++-.+..-
T Consensus 644 hekL~~~LsD~vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vsdgsplvr~ev 723 (1387)
T KOG1517|consen 644 HEKLILLLSDPVPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMSLLALVSDGSPLVRTEV 723 (1387)
T ss_pred HHHHHHHhcCccHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHhccchHHHHHH
Confidence 999999999999999999999999886642 11 011122 22222233333379999998888
Q ss_pred HHHHHHHHHH
Q 017249 342 KRLLQDMVQR 351 (375)
Q Consensus 342 ~~~l~~l~~~ 351 (375)
.-.|.+++-.
T Consensus 724 ~v~ls~~~~g 733 (1387)
T KOG1517|consen 724 VVALSHFVVG 733 (1387)
T ss_pred HHHHHHHHHh
Confidence 8888887643
No 90
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.97 E-value=0.0051 Score=60.94 Aligned_cols=161 Identities=13% Similarity=0.157 Sum_probs=88.1
Q ss_pred HHHHhccCCHHHHHHHHHHHHHhccCCCCchhhhh---cCCcHHHHHHhhhcccchHHHHHHHHHHHHhhCChhhh-HHH
Q 017249 156 LVQILHSGSVQGRVDAVTALHYLSTCKENSSPILD---ATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGR-IAI 231 (375)
Q Consensus 156 L~~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~---~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~~~~~~-~~~ 231 (375)
++++|.+++......-...|..++.+.+.-.-+.+ ...+..+..+.. ...++..|..+|+.+-.++++. +.+
T Consensus 257 lLriLGq~d~daSd~M~DiLaqvatntdsskN~GnAILYE~V~TI~~I~~----~~~LrvlainiLgkFL~n~d~NirYv 332 (866)
T KOG1062|consen 257 LLRILGQNDADASDLMNDILAQVATNTDSSKNAGNAILYECVRTIMDIRS----NSGLRVLAINILGKFLLNRDNNIRYV 332 (866)
T ss_pred HHHHhcCCCccHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHhccC----CchHHHHHHHHHHHHhcCCccceeee
Confidence 34455566655555555666665544222111111 123333333322 2245566666666655443321 111
Q ss_pred ---------hhccCcHH----HHHHHhccCChHHHHHHHHHHHHhcccCcHHHHHHHHHcCChHHHHHHhhhCCHHHHHH
Q 017249 232 ---------TNSDGGIL----TLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQER 298 (375)
Q Consensus 232 ---------~~~~g~v~----~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~~~~~ 298 (375)
-.+..+++ .+++.|++++..++..|+..+..|....+ ... .+..|+.++...+++.+..
T Consensus 333 aLn~L~r~V~~d~~avqrHr~tIleCL~DpD~SIkrralELs~~lvn~~N---v~~-----mv~eLl~fL~~~d~~~k~~ 404 (866)
T KOG1062|consen 333 ALNMLLRVVQQDPTAVQRHRSTILECLKDPDVSIKRRALELSYALVNESN---VRV-----MVKELLEFLESSDEDFKAD 404 (866)
T ss_pred ehhhHHhhhcCCcHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhcccc---HHH-----HHHHHHHHHHhccHHHHHH
Confidence 11233332 46677888888888888888888876542 222 3566788888778888877
Q ss_pred HHHHHHHhhcCC-hh----------------hhhhhhhHHHHHHHHh
Q 017249 299 ARTLLDLLRDTP-QE----------------KRLSSSVLEKIVYDIA 328 (375)
Q Consensus 299 A~~~L~~l~~~~-~~----------------~~~~~g~~~~l~~~l~ 328 (375)
.+.-+..+.+.- |. ..+...++..++.++.
T Consensus 405 ~as~I~~laEkfaP~k~W~idtml~Vl~~aG~~V~~dv~~nll~LIa 451 (866)
T KOG1062|consen 405 IASKIAELAEKFAPDKRWHIDTMLKVLKTAGDFVNDDVVNNLLRLIA 451 (866)
T ss_pred HHHHHHHHHHhcCCcchhHHHHHHHHHHhcccccchhhHHHHHHHHh
Confidence 776555554422 21 2344557777777665
No 91
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.95 E-value=0.00038 Score=68.50 Aligned_cols=256 Identities=18% Similarity=0.176 Sum_probs=175.7
Q ss_pred HhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhccChhhH
Q 017249 24 QALIEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIESSLLALLNLAVRNERNK 103 (375)
Q Consensus 24 ~~~l~~Lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~~~~~~~~~a~~~L~~L~~~~~~~r 103 (375)
...++.++......|.+.+.-.--.+.+.+... +... .+++..++.-..++++.++..|++.++.+..+ ...
T Consensus 48 SslF~dvvk~~~T~dlelKKlvyLYl~nYa~~~-P~~a-----~~avnt~~kD~~d~np~iR~lAlrtm~~l~v~--~i~ 119 (734)
T KOG1061|consen 48 SSLFPDVVKCMQTRDLELKKLVYLYLMNYAKGK-PDLA-----ILAVNTFLKDCEDPNPLIRALALRTMGCLRVD--KIT 119 (734)
T ss_pred HhhhHHHHhhcccCCchHHHHHHHHHHHhhccC-chHH-----HhhhhhhhccCCCCCHHHHHHHhhceeeEeeh--HHH
Confidence 345667777777777777777777888887777 3221 24566777777788899999999988877642 222
Q ss_pred HHHHHcCChHHHHHhhcCCChHHHHHHHHHHHHhhccCCChhHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCCC
Q 017249 104 VKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTCKE 183 (375)
Q Consensus 104 ~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~~L~~~~~ 183 (375)
..+ +.++.+.+++.++.+|..++-+..++-. .+.......|.++.|-+++.+.++.+..+|+.+|..+.....
T Consensus 120 ey~-----~~Pl~~~l~d~~~yvRktaa~~vakl~~--~~~~~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~ 192 (734)
T KOG1061|consen 120 EYL-----CDPLLKCLKDDDPYVRKTAAVCVAKLFD--IDPDLVEDSGLVDALKDLLSDSNPMVVANALAALSEIHESHP 192 (734)
T ss_pred HHH-----HHHHHHhccCCChhHHHHHHHHHHHhhc--CChhhccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCC
Confidence 333 5589999999999999999888888744 344566678999999999999999999999999999986543
Q ss_pred C-chhhhhcCCcHHHHHHhhhcccchHHHHHHHHHHHHhhCC-hhhhHHHhhccCcHHHHHHHhccCChHHHHHHHHHHH
Q 017249 184 N-SSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSS-EEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALL 261 (375)
Q Consensus 184 ~-~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~ 261 (375)
+ -........+..++..+...+++.. +.+|.+++.. +..-..+. ..+..+...|.+.++.+.-.++.++.
T Consensus 193 ~~~~~~l~~~~~~~lL~al~ec~EW~q-----i~IL~~l~~y~p~d~~ea~---~i~~r~~p~Lqh~n~avvlsavKv~l 264 (734)
T KOG1061|consen 193 SVNLLELNPQLINKLLEALNECTEWGQ-----IFILDCLAEYVPKDSREAE---DICERLTPRLQHANSAVVLSAVKVIL 264 (734)
T ss_pred CCCcccccHHHHHHHHHHHHHhhhhhH-----HHHHHHHHhcCCCCchhHH---HHHHHhhhhhccCCcceEeehHHHHH
Confidence 2 2222333455566666666655433 3445555542 21112222 36677888888888888889999998
Q ss_pred HhcccCcHHHHHHHHHcCChHHHHHHhhhCCHHHHHHHHHHHHH
Q 017249 262 SLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDL 305 (375)
Q Consensus 262 ~l~~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~~~~~A~~~L~~ 305 (375)
.+..... . .....-...-++|+.++...+ ..+.-|..=+..
T Consensus 265 ~~~~~~~-~-~~~~~~~K~~~pl~tlls~~~-e~qyvaLrNi~l 305 (734)
T KOG1061|consen 265 QLVKYLK-Q-VNELLFKKVAPPLVTLLSSES-EIQYVALRNINL 305 (734)
T ss_pred HHHHHHH-H-HHHHHHHHhcccceeeecccc-hhhHHHHhhHHH
Confidence 8877652 2 333444567778888777665 666665553333
No 92
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=97.86 E-value=0.00024 Score=62.19 Aligned_cols=182 Identities=21% Similarity=0.210 Sum_probs=113.6
Q ss_pred cCCCHHHHHHHHHHHHHHHhhC-ChhhHHHHHhc--CChHHHHHhhCCCCHHHHHHHHHHHHHhhccChhhHHHHHHcCC
Q 017249 35 INGDLETKIEAARDIRKVVKKS-SLKTRSEFAAA--GVVQPLVLMLVSPNLDAIESSLLALLNLAVRNERNKVKIATAGA 111 (375)
Q Consensus 35 ~s~~~~~~~~a~~~l~~l~~~~-~~~~~~~~~~~--g~v~~Lv~~L~~~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~ 111 (375)
.+.+++.+.+|+..|..+..+. +......+.+. ..+..+...+.+....+...|+.++..++..-...-... -...
T Consensus 17 ~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~-~~~~ 95 (228)
T PF12348_consen 17 SESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPY-ADIL 95 (228)
T ss_dssp T-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHH-HHHH
T ss_pred CccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHH-HHHH
Confidence 4789999999999999998776 22333333332 567788888888778899999999999986433222222 2346
Q ss_pred hHHHHHhhcCCChHHHHHHHHHHHHhhccCCChhHHHhcCC-hHHHHHHhccCCHHHHHHHHHHHHHhccCCC-Cchhhh
Q 017249 112 IPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGA-APLLVQILHSGSVQGRVDAVTALHYLSTCKE-NSSPIL 189 (375)
Q Consensus 112 i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~-l~~L~~lL~~~~~~~~~~a~~~L~~L~~~~~-~~~~i~ 189 (375)
+|.|+..+.+....++..|..+|..+....... ... ++.+...+.+.++.++..++..+..+...-. ....+-
T Consensus 96 l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~-----~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~ 170 (228)
T PF12348_consen 96 LPPLLKKLGDSKKFIREAANNALDAIIESCSYS-----PKILLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQ 170 (228)
T ss_dssp HHHHHHGGG---HHHHHHHHHHHHHHHTTS-H-------HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG-
T ss_pred HHHHHHHHccccHHHHHHHHHHHHHHHHHCCcH-----HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhc
Confidence 899999999999999999999999998865411 122 5667777888999999999999988765432 223322
Q ss_pred hc----CCcHHHHHHhhhcccchHHHHHHHHHHHHhhCC
Q 017249 190 DA----TAVPPLINLLKDCKKYSKFAEKATALLEILSSS 224 (375)
Q Consensus 190 ~~----g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~~ 224 (375)
.. ..++.+...+.+. ++.++..|-.++..+...
T Consensus 171 ~~~~~~~l~~~l~~~l~D~--~~~VR~~Ar~~~~~l~~~ 207 (228)
T PF12348_consen 171 KSAFLKQLVKALVKLLSDA--DPEVREAARECLWALYSH 207 (228)
T ss_dssp -HHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHCCCC--CHHHHHHHHHHHHHHHHH
Confidence 22 3555666666665 557899898888888543
No 93
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.86 E-value=6.3e-05 Score=55.00 Aligned_cols=86 Identities=30% Similarity=0.370 Sum_probs=70.5
Q ss_pred hHHHHHhh-CCCCHHHHHHHHHHHHHhhccChhhHHHHHHcCChHHHHHhhcCCChHHHHHHHHHHHHhhccCCChhHHH
Q 017249 70 VQPLVLML-VSPNLDAIESSLLALLNLAVRNERNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIA 148 (375)
Q Consensus 70 v~~Lv~~L-~~~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~ 148 (375)
|+.|++.| +++++.++..++++|+++-. + .+++.|+.+++++++.++..|+.+|..+ .
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~~--~---------~~~~~L~~~l~d~~~~vr~~a~~aL~~i----------~ 59 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELGD--P---------EAIPALIELLKDEDPMVRRAAARALGRI----------G 59 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCTH--H---------HHHHHHHHHHTSSSHHHHHHHHHHHHCC----------H
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcCC--H---------hHHHHHHHHHcCCCHHHHHHHHHHHHHh----------C
Confidence 57899988 88899999999999996642 1 3488999999999999999999999987 3
Q ss_pred hcCChHHHHHHhccCC-HHHHHHHHHHHH
Q 017249 149 ASGAAPLLVQILHSGS-VQGRVDAVTALH 176 (375)
Q Consensus 149 ~~~~l~~L~~lL~~~~-~~~~~~a~~~L~ 176 (375)
....++.|.+++.+.+ ..++..|+.+|.
T Consensus 60 ~~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 60 DPEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp HHHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 4668999999998764 556888887763
No 94
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.76 E-value=0.0088 Score=58.69 Aligned_cols=302 Identities=17% Similarity=0.158 Sum_probs=181.2
Q ss_pred HhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCCC-CHHHHHHHHHHHHHhhccChhh
Q 017249 24 QALIEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSP-NLDAIESSLLALLNLAVRNERN 102 (375)
Q Consensus 24 ~~~l~~Lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~~-~~~~~~~a~~~L~~L~~~~~~~ 102 (375)
...+|+|++.|.++|+.++..|+..|..|+..+ |.+.- ..-|.+.++|.+. +-=+...-+...++|+--.|..
T Consensus 180 r~~FprL~EkLeDpDp~V~SAAV~VICELArKn-PknyL-----~LAP~ffkllttSsNNWmLIKiiKLF~aLtplEPRL 253 (877)
T KOG1059|consen 180 RPCFPRLVEKLEDPDPSVVSAAVSVICELARKN-PQNYL-----QLAPLFYKLLVTSSNNWVLIKLLKLFAALTPLEPRL 253 (877)
T ss_pred hhhHHHHHHhccCCCchHHHHHHHHHHHHHhhC-Ccccc-----cccHHHHHHHhccCCCeehHHHHHHHhhccccCchh
Confidence 456899999999999999999999999999999 55533 3467788888543 3345667778888888766666
Q ss_pred HHHHHHcCChHHHHHhhcCCC-hHHHHHHHHHHHHh--hccCCChhHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhc
Q 017249 103 KVKIATAGAIPPLVELLKFQN-GTLRELAAAAILTL--SAAAPNKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLS 179 (375)
Q Consensus 103 r~~i~~~g~i~~Lv~lL~~~~-~~~~~~a~~~L~~L--s~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~~L~ 179 (375)
...+ +++|..++.+.. -.+...++.++... +..-++... ...-++..|-.++.+.++..++-++.++..+.
T Consensus 254 gKKL-----ieplt~li~sT~AmSLlYECvNTVVa~s~s~g~~d~~a-siqLCvqKLr~fiedsDqNLKYlgLlam~KI~ 327 (877)
T KOG1059|consen 254 GKKL-----IEPITELMESTVAMSLLYECVNTVVAVSMSSGMSDHSA-SIQLCVQKLRIFIEDSDQNLKYLGLLAMSKIL 327 (877)
T ss_pred hhhh-----hhHHHHHHHhhHHHHHHHHHHHHheeehhccCCCCcHH-HHHHHHHHHhhhhhcCCccHHHHHHHHHHHHh
Confidence 5555 679999998764 34455555555433 222111111 12346778888889999999999999999887
Q ss_pred cC-CCCchhhhhcCCcHHHHHHhhhcccchHHHHHHHHHHHHhhCChhhhHHHhhccCcHHHHHHHhccCC-hHHHHHHH
Q 017249 180 TC-KENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGS-LVSTQHAV 257 (375)
Q Consensus 180 ~~-~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~-~~~~~~a~ 257 (375)
.. +..... .-..+++.|.+. +..++..|+..|..+..-. |.. .++..|+.++...+ ...+..-+
T Consensus 328 ktHp~~Vqa-----~kdlIlrcL~Dk--D~SIRlrALdLl~gmVskk-Nl~------eIVk~LM~~~~~ae~t~yrdell 393 (877)
T KOG1059|consen 328 KTHPKAVQA-----HKDLILRCLDDK--DESIRLRALDLLYGMVSKK-NLM------EIVKTLMKHVEKAEGTNYRDELL 393 (877)
T ss_pred hhCHHHHHH-----hHHHHHHHhccC--CchhHHHHHHHHHHHhhhh-hHH------HHHHHHHHHHHhccchhHHHHHH
Confidence 53 222221 234566777765 4467777888888776322 222 24556666664333 46777777
Q ss_pred HHHHHhcccCcHHHHHHHHH-cCChHHHHHHhh-hCCHHHHHHHHHHHHHhhcCChhhhhhhhhHHHHHH--HHhhcC--
Q 017249 258 GALLSLCQSCRDKYRQLILK-EGAIPGLLRLTV-EGTFEAQERARTLLDLLRDTPQEKRLSSSVLEKIVY--DIAARV-- 331 (375)
Q Consensus 258 ~~L~~l~~~~~~~~~~~l~~-~g~v~~L~~ll~-~~~~~~~~~A~~~L~~l~~~~~~~~~~~g~~~~l~~--~l~~~~-- 331 (375)
.-+..+|+.++ -..+.+ +-.+..|+++.. .+...-..-+..++...-+.+.-+-+....+..|+. .+....
T Consensus 394 ~~II~iCS~sn---Y~~ItdFEWYlsVlveLa~l~~~~~G~~I~eQi~Dv~iRV~~iR~fsV~~m~~Ll~~~~~~~s~q~ 470 (877)
T KOG1059|consen 394 TRIISICSQSN---YQYITDFEWYLSVLVELARLEGTRHGSLIAEQIIDVAIRVPSIRPFSVSQMSALLDDPLLAGSAQI 470 (877)
T ss_pred HHHHHHhhhhh---hhhhhhHHHHHHHHHHHHhccccchhhHHHHHHHHHheechhhhHhHHHHHHHHHhchhhccchhh
Confidence 77777887653 334444 345567777665 333333344444444444433111122222222222 111011
Q ss_pred CC-hHHHHHHHHHHHHHHHHHHHH
Q 017249 332 DG-ADKAAETAKRLLQDMVQRSME 354 (375)
Q Consensus 332 ~g-~~~~~~~a~~~l~~l~~~s~~ 354 (375)
++ -...-..|++++..+.++.-+
T Consensus 471 n~~l~eVL~AaaWi~GEyse~ven 494 (877)
T KOG1059|consen 471 NSQLCEVLYAAAWILGEYSEFVEN 494 (877)
T ss_pred ccchhHHHHHHHHHHHHHHHHhhC
Confidence 11 134456677777777665443
No 95
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.75 E-value=0.024 Score=56.31 Aligned_cols=142 Identities=8% Similarity=0.040 Sum_probs=86.0
Q ss_pred HHHHHHHHHHHHhhCChhhhHHHhhccCcHHHHHHHhccCChHHHHHHHHHHHHhcccC----------------cHHH-
Q 017249 209 KFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSC----------------RDKY- 271 (375)
Q Consensus 209 ~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~----------------~~~~- 271 (375)
.+..+++.+++.++.... ..+++..|+.+|.+. ..+|.-.+..+..++... ++..
T Consensus 302 sVVmA~aql~y~lAP~~~-------~~~i~kaLvrLLrs~-~~vqyvvL~nIa~~s~~~~~lF~P~lKsFfv~ssDp~~v 373 (968)
T KOG1060|consen 302 SVVMAVAQLFYHLAPKNQ-------VTKIAKALVRLLRSN-REVQYVVLQNIATISIKRPTLFEPHLKSFFVRSSDPTQV 373 (968)
T ss_pred HHHHHHHhHHHhhCCHHH-------HHHHHHHHHHHHhcC-CcchhhhHHHHHHHHhcchhhhhhhhhceEeecCCHHHH
Confidence 455677788888776542 235677888888653 334444444444443321 1111
Q ss_pred -------HHHHHHcC----ChHHHHHHhhhCCHHHHHHHHHHHHHhhcCChhhhhhhhhHHHHHHHHhhcCCChHHHHHH
Q 017249 272 -------RQLILKEG----AIPGLLRLTVEGTFEAQERARTLLDLLRDTPQEKRLSSSVLEKIVYDIAARVDGADKAAET 340 (375)
Q Consensus 272 -------~~~l~~~g----~v~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~~~~~~~g~~~~l~~~l~~~~~g~~~~~~~ 340 (375)
...++.++ ++.-+..++.+.+.++--.|+.++..|+... .-+....+..|+..|.++ +...-..
T Consensus 374 k~lKleiLs~La~esni~~ILrE~q~YI~s~d~~faa~aV~AiGrCA~~~--~sv~~tCL~gLv~Llssh---de~Vv~e 448 (968)
T KOG1060|consen 374 KILKLEILSNLANESNISEILRELQTYIKSSDRSFAAAAVKAIGRCASRI--GSVTDTCLNGLVQLLSSH---DELVVAE 448 (968)
T ss_pred HHHHHHHHHHHhhhccHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHhh--CchhhHHHHHHHHHHhcc---cchhHHH
Confidence 11222333 3344445666666666666677777776554 345566888898888644 4667788
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHH
Q 017249 341 AKRLLQDMVQRSMELSMTRIQQR 363 (375)
Q Consensus 341 a~~~l~~l~~~s~~~~~~~~~~~ 363 (375)
|.-.++.|++..+-+..+-|.|=
T Consensus 449 aV~vIk~Llq~~p~~h~~ii~~L 471 (968)
T KOG1060|consen 449 AVVVIKRLLQKDPAEHLEILFQL 471 (968)
T ss_pred HHHHHHHHHhhChHHHHHHHHHH
Confidence 88999999988877776555543
No 96
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=97.75 E-value=0.00054 Score=64.72 Aligned_cols=199 Identities=10% Similarity=0.045 Sum_probs=143.5
Q ss_pred HHHHHHHHHHhhccChhhHHHHHHcCChHHHHHhhcCCChHHHHHHHHHHHHhhccCC-ChhHHHhcCChHHHHHHhccC
Q 017249 85 IESSLLALLNLAVRNERNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAP-NKPAIAASGAAPLLVQILHSG 163 (375)
Q Consensus 85 ~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~-~~~~i~~~~~l~~L~~lL~~~ 163 (375)
..+++.+|..++++-.-.|.-+....+.++|+++|..++..+...+...++|+...-+ -+..+...+.+..|+.++.+.
T Consensus 406 ~~a~~l~LkS~SrSV~~LRTgL~d~~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sK 485 (743)
T COG5369 406 FVAIVLFLKSMSRSVTFLRTGLLDYPIVELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSK 485 (743)
T ss_pred HHHHHHHHHHhhHHHHHHHhhccccchHHHHHHHhcCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcc
Confidence 4456667777777555567778888899999999998877777788888999877655 467778899999999999999
Q ss_pred CHHHHHHHHHHHHHhccCCC--CchhhhhcCCcHHHHHHhhhcccchHHHHHHHHHHHHhhCChhh---hHHHhhccC--
Q 017249 164 SVQGRVDAVTALHYLSTCKE--NSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEG---RIAITNSDG-- 236 (375)
Q Consensus 164 ~~~~~~~a~~~L~~L~~~~~--~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~~~~~---~~~~~~~~g-- 236 (375)
+...+.+..|.+..+..+.. .+-.....-++..++.+..++. -.+++.++.+|+|+..+..- .+.+.....
T Consensus 486 DdaLqans~wvlrHlmyncq~~ekf~~Lakig~~kvl~~~NDpc--~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~ 563 (743)
T COG5369 486 DDALQANSEWVLRHLMYNCQKNEKFKFLAKIGVEKVLSYTNDPC--FKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPR 563 (743)
T ss_pred hhhhhhcchhhhhhhhhcCcchhhhhhHHhcCHHHHHHHhcCcc--cccHHHHHHHHHhcccccccccccceeEEecChH
Confidence 99999999999999987643 3455667778999999987653 36788999999999874221 222221111
Q ss_pred --cHHHHHHHhccCChHHHHHHHHHHHHhcccCcHHHHHHHHH-cCChHHHHH
Q 017249 237 --GILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILK-EGAIPGLLR 286 (375)
Q Consensus 237 --~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~-~g~v~~L~~ 286 (375)
....|+..+...+|..-+..+.+|.+++..++ ..+..+.+ ...+..+.+
T Consensus 564 ~ylfk~l~~k~e~~np~~i~~~~yilv~~aa~d~-~l~~~V~~q~~~L~~i~e 615 (743)
T COG5369 564 RYLFKRLIDKYEENNPMEILEGCYILVRNAACDD-TLDYIVQSQEDMLDSIFE 615 (743)
T ss_pred HHHHHHHHHHHHhcCchhhhhhHHHHHHHHhccc-hHHHHHHhHHHHHHHHHH
Confidence 23345555566777777778999998888763 44444444 344444443
No 97
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.73 E-value=0.00069 Score=66.69 Aligned_cols=72 Identities=21% Similarity=0.192 Sum_probs=61.6
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhccCh
Q 017249 25 ALIEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIESSLLALLNLAVRNE 100 (375)
Q Consensus 25 ~~l~~Lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~~~~~~~~~a~~~L~~L~~~~~ 100 (375)
-...++.+.++++++.++..++.++.++-..+ .+...+.|.++.|..++.+.++.++..|+.+|..+...++
T Consensus 121 y~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~----~~~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~ 192 (734)
T KOG1061|consen 121 YLCDPLLKCLKDDDPYVRKTAAVCVAKLFDID----PDLVEDSGLVDALKDLLSDSNPMVVANALAALSEIHESHP 192 (734)
T ss_pred HHHHHHHHhccCCChhHHHHHHHHHHHhhcCC----hhhccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCC
Confidence 35678888889999999999999999887655 4556678999999999999999999999999999987554
No 98
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=97.73 E-value=0.0021 Score=63.02 Aligned_cols=240 Identities=13% Similarity=0.092 Sum_probs=139.9
Q ss_pred hhHHHHHhhHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCCCC--HHHHHHHHHHH
Q 017249 15 EEEAWNQRKQALIEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPN--LDAIESSLLAL 92 (375)
Q Consensus 15 ~~~~~~~~~~~~l~~Lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~~~--~~~~~~a~~~L 92 (375)
.+-+..+.....+.++|.-+.++.+..+.-.+..+.++...-.....+.-.+...++.++-.+..++ ..+....+.++
T Consensus 706 v~ia~KvG~~~~v~R~v~~lkde~e~yrkm~~etv~ri~~~lg~~diderleE~lidgil~Afqeqtt~d~vml~gfg~V 785 (1172)
T KOG0213|consen 706 VEIAAKVGSDPIVSRVVLDLKDEPEQYRKMVAETVSRIVGRLGAADIDERLEERLIDGILYAFQEQTTEDSVMLLGFGTV 785 (1172)
T ss_pred HHHHHHhCchHHHHHHhhhhccccHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHhcccchhhhhhhHHHH
Confidence 3445556666677777777777777666655555555443220000000011122333333333322 12222333333
Q ss_pred HHhhcc-ChhhHHHHHHcCChHHHHHhhcCCChHHHHHHHHHHHHhhccCCC---hhHHHhcCChHHHHHHhccCCHHHH
Q 017249 93 LNLAVR-NERNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPN---KPAIAASGAAPLLVQILHSGSVQGR 168 (375)
Q Consensus 93 ~~L~~~-~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~---~~~i~~~~~l~~L~~lL~~~~~~~~ 168 (375)
.+-... ...+-.+ .+..++..|++.++.+|+.|+..+..++.--.. -..+...|. .|.+.|....+++.
T Consensus 786 ~~~lg~r~kpylpq-----i~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGv--vLyEylgeeypEvL 858 (1172)
T KOG0213|consen 786 VNALGGRVKPYLPQ-----ICSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGV--VLYEYLGEEYPEVL 858 (1172)
T ss_pred HHHHhhccccchHH-----HHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhH--HHHHhcCcccHHHH
Confidence 332211 1111222 244667788999999999999999998754222 223334443 47778888888887
Q ss_pred HHHHHHHHHhccCC-CCchhhhhcCCcHHHHHHhhhcccchHHHHHHHHHHHHhhCCh-h---hhHHHhhccCcHHHHHH
Q 017249 169 VDAVTALHYLSTCK-ENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSE-E---GRIAITNSDGGILTLVE 243 (375)
Q Consensus 169 ~~a~~~L~~L~~~~-~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~~~-~---~~~~~~~~~g~v~~Lv~ 243 (375)
-..+.+|+.+...- -.+..---.+.+|.|.-+|++. +.++++++...+..+|... + .|..+. +--.|+.
T Consensus 859 gsILgAikaI~nvigm~km~pPi~dllPrltPILknr--heKVqen~IdLvg~IadrgpE~v~aREWMR----IcfeLle 932 (1172)
T KOG0213|consen 859 GSILGAIKAIVNVIGMTKMTPPIKDLLPRLTPILKNR--HEKVQENCIDLVGTIADRGPEYVSAREWMR----ICFELLE 932 (1172)
T ss_pred HHHHHHHHHHHHhccccccCCChhhhcccchHhhhhh--HHHHHHHHHHHHHHHHhcCcccCCHHHHHH----HHHHHHH
Confidence 77777777665431 1111111246889999999876 6689999999999998642 2 233332 2345777
Q ss_pred HhccCChHHHHHHHHHHHHhcccC
Q 017249 244 TVEDGSLVSTQHAVGALLSLCQSC 267 (375)
Q Consensus 244 lL~~~~~~~~~~a~~~L~~l~~~~ 267 (375)
+|+..+..++..|...++.++..-
T Consensus 933 lLkahkK~iRRaa~nTfG~IakaI 956 (1172)
T KOG0213|consen 933 LLKAHKKEIRRAAVNTFGYIAKAI 956 (1172)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHhc
Confidence 888888889999999988887643
No 99
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=97.73 E-value=0.036 Score=53.27 Aligned_cols=300 Identities=16% Similarity=0.160 Sum_probs=163.8
Q ss_pred HHHHHHHHhcCCC----HHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhccChh
Q 017249 26 LIEELSDKLINGD----LETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIESSLLALLNLAVRNER 101 (375)
Q Consensus 26 ~l~~Lv~~L~s~~----~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~~~~~~~~~a~~~L~~L~~~~~~ 101 (375)
+.-++++.+.+.. .-....-++++..+...+ ++.+.++ .|.|-..|++...-+...+++.+..++..+
T Consensus 224 a~lklv~hf~~n~smknq~a~V~lvr~~~~ll~~n-~q~~~q~-----rpfL~~wls~k~emV~lE~Ar~v~~~~~~n-- 295 (898)
T COG5240 224 AQLKLVEHFRGNASMKNQLAGVLLVRATVELLKEN-SQALLQL-----RPFLNSWLSDKFEMVFLEAARAVCALSEEN-- 295 (898)
T ss_pred HHHHHHHHhhcccccccchhheehHHHHHHHHHhC-hHHHHHH-----HHHHHHHhcCcchhhhHHHHHHHHHHHHhc--
Confidence 4456666665432 333444566777777777 5665554 466667788877888999999999888643
Q ss_pred hHHHHHHcCChHHHHHhhcCCChHHHHHHHHHHHHhhccCCChhHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccC
Q 017249 102 NKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTC 181 (375)
Q Consensus 102 ~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~~L~~~ 181 (375)
.-..++.. .+..|-.+|++.....|..|.++|..|+...+.+.... -+-+-.++.+.+..+...|..+|.. +..
T Consensus 296 v~~~~~~~-~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~kv~vc----N~evEsLIsd~Nr~IstyAITtLLK-TGt 369 (898)
T COG5240 296 VGSQFVDQ-TVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQKVSVC----NKEVESLISDENRTISTYAITTLLK-TGT 369 (898)
T ss_pred cCHHHHHH-HHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCceeeec----ChhHHHHhhcccccchHHHHHHHHH-cCc
Confidence 22233322 36677778888888899999999999987654332211 1223333344444444444433322 111
Q ss_pred CCCchhhhhcCCcHHHHHHhhhcccchHHHHHHHHHHHHhhC-ChhhhHH--------HhhccCc-------HHHHHHHh
Q 017249 182 KENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSS-SEEGRIA--------ITNSDGG-------ILTLVETV 245 (375)
Q Consensus 182 ~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~-~~~~~~~--------~~~~~g~-------v~~Lv~lL 245 (375)
+++...+++ .++..+.=+.++ .+.-+..+++.||. .|.-+.. +. ..|+ |+.+...+
T Consensus 370 ~e~idrLv~--~I~sfvhD~SD~-----FKiI~ida~rsLsl~Fp~k~~s~l~FL~~~L~-~eGg~eFK~~~Vdaisd~~ 441 (898)
T COG5240 370 EETIDRLVN--LIPSFVHDMSDG-----FKIIAIDALRSLSLLFPSKKLSYLDFLGSSLL-QEGGLEFKKYMVDAISDAM 441 (898)
T ss_pred hhhHHHHHH--HHHHHHHhhccC-----ceEEeHHHHHHHHhhCcHHHHHHHHHHHHHHH-hcccchHHHHHHHHHHHHH
Confidence 222222221 111111111111 11111222222221 1111111 11 2333 23333333
Q ss_pred ccCChHHHHHHHHHHHHhcccCc-HHHHH----HHHHcC--------ChHHHHHHhhhCCHHHHHHHHHHHHHhhcCChh
Q 017249 246 EDGSLVSTQHAVGALLSLCQSCR-DKYRQ----LILKEG--------AIPGLLRLTVEGTFEAQERARTLLDLLRDTPQE 312 (375)
Q Consensus 246 ~~~~~~~~~~a~~~L~~l~~~~~-~~~~~----~l~~~g--------~v~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~~ 312 (375)
. ..|..++.|+..||.+..++. ++..- .+.++| .+.++..-+--.+..+|-.|+.+|..++-....
T Consensus 442 ~-~~p~skEraLe~LC~fIEDcey~~I~vrIL~iLG~EgP~a~~P~~yvrhIyNR~iLEN~ivRsaAv~aLskf~ln~~d 520 (898)
T COG5240 442 E-NDPDSKERALEVLCTFIEDCEYHQITVRILGILGREGPRAKTPGKYVRHIYNRLILENNIVRSAAVQALSKFALNISD 520 (898)
T ss_pred h-hCchHHHHHHHHHHHHHhhcchhHHHHHHHHHhcccCCCCCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHhccCccc
Confidence 3 346678888888888876652 11111 111222 344444433345678999999999888776655
Q ss_pred hhhhhhhHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHH
Q 017249 313 KRLSSSVLEKIVYDIAARVDGADKAAETAKRLLQDMVQR 351 (375)
Q Consensus 313 ~~~~~g~~~~l~~~l~~~~~g~~~~~~~a~~~l~~l~~~ 351 (375)
......+...|-+.+ .|.++..+++|.=+|++|.-.
T Consensus 521 ~~~~~sv~~~lkRcl---nD~DdeVRdrAsf~l~~~~~~ 556 (898)
T COG5240 521 VVSPQSVENALKRCL---NDQDDEVRDRASFLLRNMRLS 556 (898)
T ss_pred cccHHHHHHHHHHHh---hcccHHHHHHHHHHHHhhhhh
Confidence 566666666554444 466689999999999999744
No 100
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=97.71 E-value=0.00033 Score=61.27 Aligned_cols=184 Identities=16% Similarity=0.088 Sum_probs=112.0
Q ss_pred CCCCHHHHHHHHHHHHHhhccC--hhhHHHHHH--cCChHHHHHhhcCCChHHHHHHHHHHHHhhccCCChhHHHhcCCh
Q 017249 78 VSPNLDAIESSLLALLNLAVRN--ERNKVKIAT--AGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAA 153 (375)
Q Consensus 78 ~~~~~~~~~~a~~~L~~L~~~~--~~~r~~i~~--~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~l 153 (375)
.+.+.+.+..++..|..+..++ ......+.. ...+..+...+.+....+...|+.++..++..-...-.-.....+
T Consensus 17 ~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~~l 96 (228)
T PF12348_consen 17 SESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYADILL 96 (228)
T ss_dssp T-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHH
Confidence 5678999999999999999866 233344333 255677777777777778889999999998764332211245678
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHhccCCCCchhhhhcCCcHHHHHHhhhcccchHHHHHHHHHHHHhhCChh-hhHHHh
Q 017249 154 PLLVQILHSGSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEE-GRIAIT 232 (375)
Q Consensus 154 ~~L~~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~~~~-~~~~~~ 232 (375)
+.|++.+.+.+..++..|..+|..++..-.....+ .++.+...+.+. .+.++..++..+..+...-. ....+-
T Consensus 97 ~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~~~----~~~~l~~~~~~K--n~~vR~~~~~~l~~~l~~~~~~~~~l~ 170 (228)
T PF12348_consen 97 PPLLKKLGDSKKFIREAANNALDAIIESCSYSPKI----LLEILSQGLKSK--NPQVREECAEWLAIILEKWGSDSSVLQ 170 (228)
T ss_dssp HHHHHGGG---HHHHHHHHHHHHHHHTTS-H--HH----HHHHHHHHTT-S---HHHHHHHHHHHHHHHTT-----GGG-
T ss_pred HHHHHHHccccHHHHHHHHHHHHHHHHHCCcHHHH----HHHHHHHHHhCC--CHHHHHHHHHHHHHHHHHccchHhhhc
Confidence 99999999999899999999999988653311111 133444444443 45778888888887765332 111111
Q ss_pred h---ccCcHHHHHHHhccCChHHHHHHHHHHHHhcccC
Q 017249 233 N---SDGGILTLVETVEDGSLVSTQHAVGALLSLCQSC 267 (375)
Q Consensus 233 ~---~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~ 267 (375)
. -...++.+...+.++++.+|+.|-.+++.+...-
T Consensus 171 ~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~ 208 (228)
T PF12348_consen 171 KSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHF 208 (228)
T ss_dssp -HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHC
Confidence 0 0246677888889999999999999999986654
No 101
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=97.70 E-value=0.0081 Score=57.50 Aligned_cols=298 Identities=12% Similarity=0.078 Sum_probs=174.7
Q ss_pred HHHHHHHHHHHHHHHhhCChhhHHHHHhcC-ChHHHHHh-hCC-CCHHHHHHHHHHHHHhhccChhhHHHHHHcCC----
Q 017249 39 LETKIEAARDIRKVVKKSSLKTRSEFAAAG-VVQPLVLM-LVS-PNLDAIESSLLALLNLAVRNERNKVKIATAGA---- 111 (375)
Q Consensus 39 ~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g-~v~~Lv~~-L~~-~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~---- 111 (375)
...+.+++.++...+...+| ...+...+ .+-.++.. ++. ++..+|-.|+.+|.+-+. ..+..+...+-
T Consensus 148 ~~~k~~sl~~~gy~ces~~P--e~li~~sN~il~aiv~ga~k~et~~avRLaaL~aL~dsl~---fv~~nf~~E~erNy~ 222 (858)
T COG5215 148 VSGKCESLGICGYHCESEAP--EDLIQMSNVILFAIVMGALKNETTSAVRLAALKALMDSLM---FVQGNFCYEEERNYF 222 (858)
T ss_pred hHhHHHHHHHHHHHhhccCH--HHHHHHhhHHHHHHHHhhcccCchHHHHHHHHHHHHHHHH---HHHHhhcchhhhchh
Confidence 34577788888888877623 33333333 23334433 333 357788889888887321 23333433333
Q ss_pred hHHHHHhhcCCChHHHHHHHHHHHHhhcc-CCChhHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCC-CCc----
Q 017249 112 IPPLVELLKFQNGTLRELAAAAILTLSAA-APNKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTCK-ENS---- 185 (375)
Q Consensus 112 i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~-~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~~L~~~~-~~~---- 185 (375)
+...++.-..++.+++..+..||..+..- -..-+...+.-........+++++.++...+...-..++... +.-
T Consensus 223 mqvvceatq~~d~e~q~aafgCl~kim~LyY~fm~~ymE~aL~alt~~~mks~nd~va~qavEfWsticeEeid~~~e~~ 302 (858)
T COG5215 223 MQVVCEATQGNDEELQHAAFGCLNKIMMLYYKFMQSYMENALAALTGRFMKSQNDEVAIQAVEFWSTICEEEIDGEMEDK 302 (858)
T ss_pred heeeehhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhhhHHHHh
Confidence 33444555677899999999999887532 122223344444555666788889888777776554554321 100
Q ss_pred ----------hhh--hhcCCcHHHHHHhhhcccch-----HHHHHHHHHHHHhhCChhhhHHHhhccCcHHHHHH----H
Q 017249 186 ----------SPI--LDATAVPPLINLLKDCKKYS-----KFAEKATALLEILSSSEEGRIAITNSDGGILTLVE----T 244 (375)
Q Consensus 186 ----------~~i--~~~g~i~~Lv~ll~~~~~~~-----~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~Lv~----l 244 (375)
... .-.+++|.|+++|....++. .....|..+|.-++.... ...+..++. -
T Consensus 303 ~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~~g--------d~i~~pVl~FvEqn 374 (858)
T COG5215 303 YLPEVPAQNHGFARAAVADVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQLKG--------DKIMRPVLGFVEQN 374 (858)
T ss_pred hcccCchhhcchHHHHHHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHHHHHHhh--------hHhHHHHHHHHHHh
Confidence 000 01358899999998632111 234555666654442211 122223333 3
Q ss_pred hccCChHHHHHHHHHHHHhcccCcHHHHHHHHHcCChHHHHHHhhhCCHHHHHHHHHHHHHhhcCChhhhhhhh----hH
Q 017249 245 VEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDTPQEKRLSSS----VL 320 (375)
Q Consensus 245 L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~~~~~~~g----~~ 320 (375)
+.+++-.-++.|+.+++.+.++....+...+ -..++|.+...+.+..-.++..++|++..++.+.+.-+-..| .+
T Consensus 375 i~~~~w~nreaavmAfGSvm~gp~~~~lT~~-V~qalp~i~n~m~D~~l~vk~ttAwc~g~iad~va~~i~p~~Hl~~~v 453 (858)
T COG5215 375 IRSESWANREAAVMAFGSVMHGPCEDCLTKI-VPQALPGIENEMSDSCLWVKSTTAWCFGAIADHVAMIISPCGHLVLEV 453 (858)
T ss_pred ccCchhhhHHHHHHHhhhhhcCccHHHHHhh-HHhhhHHHHHhcccceeehhhHHHHHHHHHHHHHHHhcCccccccHHH
Confidence 4566666788999999999887654433333 367788888888888889999999999999988865333333 33
Q ss_pred HHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHH
Q 017249 321 EKIVYDIAARVDGADKAAETAKRLLQDMVQRSME 354 (375)
Q Consensus 321 ~~l~~~l~~~~~g~~~~~~~a~~~l~~l~~~s~~ 354 (375)
.+.+--| .|+ |+......+...+|+.+-..
T Consensus 454 sa~liGl---~D~-p~~~~ncsw~~~nlv~h~a~ 483 (858)
T COG5215 454 SASLIGL---MDC-PFRSINCSWRKENLVDHIAK 483 (858)
T ss_pred HHHHhhh---hcc-chHHhhhHHHHHhHHHhhhh
Confidence 3333222 233 66666666666666655433
No 102
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.68 E-value=0.00015 Score=69.80 Aligned_cols=250 Identities=19% Similarity=0.180 Sum_probs=149.6
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHhhccChhhHHHHHHcCChHHHHHhhcCCChHHHHHHHHHHHHhhccCCC-hhHH----
Q 017249 73 LVLMLVSPNLDAIESSLLALLNLAVRNERNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPN-KPAI---- 147 (375)
Q Consensus 73 Lv~~L~~~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~-~~~i---- 147 (375)
|..+..+.+..++.+|+..|..|..+. ..-.. .....++.+++.+..+|..|+++++-+..-.+. ....
T Consensus 203 l~~~~~~~D~~Vrt~A~eglL~L~eg~-kL~~~-----~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e~~e~ 276 (823)
T KOG2259|consen 203 LIYLEHDQDFRVRTHAVEGLLALSEGF-KLSKA-----CYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERESEEE 276 (823)
T ss_pred HHHHhcCCCcchHHHHHHHHHhhcccc-cccHH-----HHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccchhhhh
Confidence 333444444455555555554444321 11111 245678888888999999999888877654321 1110
Q ss_pred -HhcCChHHHHHHhccCCHHHHHHHHHHHHHhccC-CCCchhhhhcCCcHHHHHHhhhcccchHHHHHHHHHHHHh--hC
Q 017249 148 -AASGAAPLLVQILHSGSVQGRVDAVTALHYLSTC-KENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEIL--SS 223 (375)
Q Consensus 148 -~~~~~l~~L~~lL~~~~~~~~~~a~~~L~~L~~~-~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l--~~ 223 (375)
....++..+.+.+.+.+..++..|+.+|..+... .+...+-.+..++.. ++... ...+.......+- +.
T Consensus 277 kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee~i~QTLdKKlms~----lRRkr---~ahkrpk~l~s~GewSs 349 (823)
T KOG2259|consen 277 KLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEEIIQQTLDKKLMSR----LRRKR---TAHKRPKALYSSGEWSS 349 (823)
T ss_pred hhHHHHHHHHHHHHhcCceeeeehHHHHhchHHHhHHHHHHHHHHHHHhhh----hhhhh---hcccchHHHHhcCCccc
Confidence 1223455666777777888888888887766432 222222222222221 11100 0001111111111 00
Q ss_pred ------------ChhhhHHHhhccCcHHHHHHHhccCChHHHHHHHHHHHHhcccCcHHHHHHHHHcCChHHHHHHhhhC
Q 017249 224 ------------SEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEG 291 (375)
Q Consensus 224 ------------~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~g~v~~L~~ll~~~ 291 (375)
.++.-..++ .+|+--.+++-|.+.-.++|..|+..++.|+...+. .....+.-|+.++.+.
T Consensus 350 Gk~~~advpsee~d~~~~siI-~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP~------FA~~aldfLvDMfNDE 422 (823)
T KOG2259|consen 350 GKEWNADVPSEEDDEEEESII-PSGACGALVHGLEDEFYEVRRAAVASLCSLATSSPG------FAVRALDFLVDMFNDE 422 (823)
T ss_pred CccccccCchhhccccccccc-cccccceeeeechHHHHHHHHHHHHHHHHHHcCCCC------cHHHHHHHHHHHhccH
Confidence 112223344 678888999999888889999999999999987642 2234567899999999
Q ss_pred CHHHHHHHHHHHHHhhcCChhhhhhhhhHHHHHHHHhhcCCChHHHHHHHHHHHHHH
Q 017249 292 TFEAQERARTLLDLLRDTPQEKRLSSSVLEKIVYDIAARVDGADKAAETAKRLLQDM 348 (375)
Q Consensus 292 ~~~~~~~A~~~L~~l~~~~~~~~~~~g~~~~l~~~l~~~~~g~~~~~~~a~~~l~~l 348 (375)
...+|..|..+|+.++.+- .++...++.++..|. |-++++++....+|++.
T Consensus 423 ~~~VRL~ai~aL~~Is~~l---~i~eeql~~il~~L~---D~s~dvRe~l~elL~~~ 473 (823)
T KOG2259|consen 423 IEVVRLKAIFALTMISVHL---AIREEQLRQILESLE---DRSVDVREALRELLKNA 473 (823)
T ss_pred HHHHHHHHHHHHHHHHHHh---eecHHHHHHHHHHHH---hcCHHHHHHHHHHHHhc
Confidence 9999999999999999884 555666676666663 55677777777666654
No 103
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=97.67 E-value=0.00013 Score=44.78 Aligned_cols=40 Identities=25% Similarity=0.311 Sum_probs=36.6
Q ss_pred hhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhc
Q 017249 58 LKTRSEFAAAGVVQPLVLMLVSPNLDAIESSLLALLNLAV 97 (375)
Q Consensus 58 ~~~~~~~~~~g~v~~Lv~~L~~~~~~~~~~a~~~L~~L~~ 97 (375)
++++..+++.|+++.|+++|.+++.+++..++++|+||+.
T Consensus 2 ~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~~ 41 (41)
T smart00185 2 DEQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLSS 41 (41)
T ss_pred cHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHcC
Confidence 3578889999999999999999999999999999999873
No 104
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=97.66 E-value=0.0004 Score=51.65 Aligned_cols=67 Identities=21% Similarity=0.133 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhC--CCCHHHHHHHHHHHHHhhccChhhHHHHHHc
Q 017249 42 KIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLV--SPNLDAIESSLLALLNLAVRNERNKVKIATA 109 (375)
Q Consensus 42 ~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~--~~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~ 109 (375)
+...++.|++++..+ +..++.+.+.|+++.+++... ..+|-+++.|+.++++|+.++++++..+.+.
T Consensus 3 K~~lvrlianl~~~~-~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~L 71 (102)
T PF09759_consen 3 KRDLVRLIANLCYKN-KEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQL 71 (102)
T ss_pred HHHHHHHHHHHHhCC-HHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHhc
Confidence 567889999999999 999999999999999998764 4579999999999999999999999888763
No 105
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.65 E-value=0.0076 Score=58.98 Aligned_cols=259 Identities=16% Similarity=0.082 Sum_probs=145.1
Q ss_pred hcCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCCCC--HHHHHHHHHHHHHhhccChhhHHHHHHcCC
Q 017249 34 LINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPN--LDAIESSLLALLNLAVRNERNKVKIATAGA 111 (375)
Q Consensus 34 L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~~~--~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~ 111 (375)
|.|.|+.-...|+.++.++...+ .++.+. +.+-++|-+++ .-++..|+-+|..|-+.+|+. +-..+.
T Consensus 120 L~srn~~fv~LAL~~I~niG~re---~~ea~~-----~DI~KlLvS~~~~~~vkqkaALclL~L~r~spDl---~~~~~W 188 (938)
T KOG1077|consen 120 LSSRNPTFVCLALHCIANIGSRE---MAEAFA-----DDIPKLLVSGSSMDYVKQKAALCLLRLFRKSPDL---VNPGEW 188 (938)
T ss_pred hhcCCcHHHHHHHHHHHhhccHh---HHHHhh-----hhhHHHHhCCcchHHHHHHHHHHHHHHHhcCccc---cChhhH
Confidence 34667777777888888876544 444332 22335665543 456788888888888765532 222456
Q ss_pred hHHHHHhhcCCChHHHHHHHHHHHHhhccCCChhHHHhcCChHHHHHHhcc-------------CCHHHHHHHHHHHHHh
Q 017249 112 IPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHS-------------GSVQGRVDAVTALHYL 178 (375)
Q Consensus 112 i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~l~~L~~lL~~-------------~~~~~~~~a~~~L~~L 178 (375)
+..++.+|...+-.+...+...+-.|+...+.--...-...+..|..+... +.+=.+..++++|.+.
T Consensus 189 ~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p~~yk~~~~~avs~L~riv~~~~t~~qdYTyy~vP~PWL~vKl~rlLq~~ 268 (938)
T KOG1077|consen 189 AQRIVHLLDDQHMGVVTAATSLIEALVKKNPESYKTCLPLAVSRLSRIVVVVGTSLQDYTYYFVPAPWLQVKLLRLLQIY 268 (938)
T ss_pred HHHHHHHhCccccceeeehHHHHHHHHHcCCHHHhhhHHHHHHHHHHHHhhcccchhhceeecCCChHHHHHHHHHHHhC
Confidence 788888888777666666666666666553321111111122222222211 2345566677777666
Q ss_pred ccC--CCCchhhhhcCCcHHHHHHhhhcccchHH-----HHHHHHHHHHhhCChhhhHHHhhccCcHHHHHHHhccCChH
Q 017249 179 STC--KENSSPILDATAVPPLINLLKDCKKYSKF-----AEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLV 251 (375)
Q Consensus 179 ~~~--~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~-----~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~ 251 (375)
-.- +..+..+. .+.+.++.....+....++ +.+.+.-.-+|+.+-+.-..++ ..++..|-++|.+....
T Consensus 269 p~~~D~~~r~~l~--evl~~iLnk~~~~~~~k~vq~~na~naVLFeaI~l~~h~D~e~~ll--~~~~~~Lg~fls~rE~N 344 (938)
T KOG1077|consen 269 PTPEDPSTRARLN--EVLERILNKAQEPPKSKKVQHSNAKNAVLFEAISLAIHLDSEPELL--SRAVNQLGQFLSHRETN 344 (938)
T ss_pred CCCCCchHHHHHH--HHHHHHHhccccCccccchHhhhhHHHHHHHHHHHHHHcCCcHHHH--HHHHHHHHHHhhccccc
Confidence 321 12222221 1233333333321111111 1112222224554434334444 25778888888888888
Q ss_pred HHHHHHHHHHHhcccCcHHHHHHHHHcCChHHHHHHhh-hCCHHHHHHHHHHHHHhhcCCh
Q 017249 252 STQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTV-EGTFEAQERARTLLDLLRDTPQ 311 (375)
Q Consensus 252 ~~~~a~~~L~~l~~~~~~~~~~~l~~~g~v~~L~~ll~-~~~~~~~~~A~~~L~~l~~~~~ 311 (375)
+|-.|+..++.|+... ...+.+-.. .+.++..++ ..|-.+|+.|+.+|..+|..+.
T Consensus 345 iRYLaLEsm~~L~ss~--~s~davK~h--~d~Ii~sLkterDvSirrravDLLY~mcD~~N 401 (938)
T KOG1077|consen 345 IRYLALESMCKLASSE--FSIDAVKKH--QDTIINSLKTERDVSIRRRAVDLLYAMCDVSN 401 (938)
T ss_pred chhhhHHHHHHHHhcc--chHHHHHHH--HHHHHHHhccccchHHHHHHHHHHHHHhchhh
Confidence 8888888888888775 224443333 666666666 6788888888888888887664
No 106
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=97.64 E-value=0.02 Score=55.44 Aligned_cols=258 Identities=17% Similarity=0.128 Sum_probs=165.3
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCChhh--HHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhccChhhH
Q 017249 26 LIEELSDKLINGDLETKIEAARDIRKVVKKSSLKT--RSEFAAAGVVQPLVLMLVSPNLDAIESSLLALLNLAVRNERNK 103 (375)
Q Consensus 26 ~l~~Lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~--~~~~~~~g~v~~Lv~~L~~~~~~~~~~a~~~L~~L~~~~~~~r 103 (375)
.+...+..|++..+.++..|+.....++.-- ..+ -+.+...|. .|.+.|....+++.-..+.++..+.. ....+
T Consensus 605 ivStiL~~L~~k~p~vR~~aadl~~sl~~vl-k~c~e~~~l~klg~--iLyE~lge~ypEvLgsil~Ai~~I~s-v~~~~ 680 (975)
T COG5181 605 IVSTILKLLRSKPPDVRIRAADLMGSLAKVL-KACGETKELAKLGN--ILYENLGEDYPEVLGSILKAICSIYS-VHRFR 680 (975)
T ss_pred HHHHHHHHhcCCCccHHHHHHHHHHHHHHHH-HhcchHHHHHHHhH--HHHHhcCcccHHHHHHHHHHHHHHhh-hhccc
Confidence 4555667788999999999998877776543 111 223444553 36677888889988887777777764 22222
Q ss_pred HHH-HHcCChHHHHHhhcCCChHHHHHHHHHHHHhhccCCC----hhHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHh
Q 017249 104 VKI-ATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPN----KPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYL 178 (375)
Q Consensus 104 ~~i-~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~----~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~~L 178 (375)
..- --.|.+|.|...|++.+..+..+.+..+..++.+.+. +..+. .-=-|+++|++.+.+++.+|..++..+
T Consensus 681 ~mqpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMR---IcfeLvd~Lks~nKeiRR~A~~tfG~I 757 (975)
T COG5181 681 SMQPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMR---ICFELVDSLKSWNKEIRRNATETFGCI 757 (975)
T ss_pred ccCCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHH---HHHHHHHHHHHhhHHHHHhhhhhhhhH
Confidence 221 1368899999999999999999999999999887542 33332 223478889999999999999998887
Q ss_pred ccCCCCchhhhhcCCcHHHHHHhhhcccchHHHHHHHHHHHHhhCChhhhHHHhhcc-C---cHHHHHHHhccCChHHHH
Q 017249 179 STCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSD-G---GILTLVETVEDGSLVSTQ 254 (375)
Q Consensus 179 ~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~-g---~v~~Lv~lL~~~~~~~~~ 254 (375)
+.. +.-.+++..|++-|+.. .-+...+..+. ++ ++.+. | .+|.|+.=-..++..+|.
T Consensus 758 s~a------iGPqdvL~~LlnnLkvq----eRq~Rvctsva-I~--------iVae~cgpfsVlP~lm~dY~TPe~nVQn 818 (975)
T COG5181 758 SRA------IGPQDVLDILLNNLKVQ----ERQQRVCTSVA-IS--------IVAEYCGPFSVLPTLMSDYETPEANVQN 818 (975)
T ss_pred Hhh------cCHHHHHHHHHhcchHH----HHHhhhhhhhh-hh--------hhHhhcCchhhHHHHHhcccCchhHHHH
Confidence 642 11112222333333221 11111222111 00 11122 2 334444434457788899
Q ss_pred HHHHHHHHhcccCcHHHHHHHHHcCChHHHHHHhhhCCHHHHHHHHHHHHHhhcCCh
Q 017249 255 HAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDTPQ 311 (375)
Q Consensus 255 ~a~~~L~~l~~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~ 311 (375)
..+.+++.+-..-.+..++.+ .-..|.|-..+.+.|+.-|.-|..+++++.-+.+
T Consensus 819 GvLkam~fmFeyig~~s~dYv--y~itPlleDAltDrD~vhRqta~nvI~Hl~Lnc~ 873 (975)
T COG5181 819 GVLKAMCFMFEYIGQASLDYV--YSITPLLEDALTDRDPVHRQTAMNVIRHLVLNCP 873 (975)
T ss_pred hHHHHHHHHHHHHHHHHHHHH--HHhhHHHHhhhcccchHHHHHHHHHHHHHhcCCC
Confidence 889988887665433333333 3455666678889999999999999999987664
No 107
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=97.58 E-value=0.0002 Score=43.91 Aligned_cols=39 Identities=38% Similarity=0.515 Sum_probs=36.0
Q ss_pred hhhHHHHHHcCChHHHHHhhcCCChHHHHHHHHHHHHhh
Q 017249 100 ERNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLS 138 (375)
Q Consensus 100 ~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls 138 (375)
++++..+.+.|+++.|++++.+++++++..++++|.||+
T Consensus 2 ~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 2 DEQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred cHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 347888999999999999999999999999999999986
No 108
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=97.58 E-value=0.0042 Score=53.19 Aligned_cols=135 Identities=17% Similarity=0.149 Sum_probs=103.0
Q ss_pred HHHHHHHHHHhhCChhhhHHHhhccCcHHHHHHHhcc-----CChHHHHHHHHHHHHhcccCcHHHHHHHHHcCChHHHH
Q 017249 211 AEKATALLEILSSSEEGRIAITNSDGGILTLVETVED-----GSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLL 285 (375)
Q Consensus 211 ~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~-----~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~g~v~~L~ 285 (375)
.-+++.+|..++++++.+..++ .+..--.|..+|.. +.+.+|-.++++|+.+...++++....+...++||..+
T Consensus 96 VcnaL~LlQcvASHpdTr~~FL-~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCL 174 (293)
T KOG3036|consen 96 VCNALALLQCVASHPDTRRAFL-RAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCL 174 (293)
T ss_pred HHHHHHHHHHHhcCcchHHHHH-HccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHH
Confidence 3568899999999999999999 47777788888853 33778999999999999998888888889999999999
Q ss_pred HHhhhCCHHHHHHHHHHHHHhhcCChh---------hhhhhh-hHHHHHHHHhhcCCChHHHHHHHHHHHHHH
Q 017249 286 RLTVEGTFEAQERARTLLDLLRDTPQE---------KRLSSS-VLEKIVYDIAARVDGADKAAETAKRLLQDM 348 (375)
Q Consensus 286 ~ll~~~~~~~~~~A~~~L~~l~~~~~~---------~~~~~g-~~~~l~~~l~~~~~g~~~~~~~a~~~l~~l 348 (375)
+.++.|+...+.-|..++..+-.+... +....+ ++..++..+. ..++++....+.++..+|
T Consensus 175 rime~GSelSKtvA~fIlqKIlldD~GL~YiCqt~eRF~av~~~L~kmv~~l~--~~ps~RllKhviRcYlrL 245 (293)
T KOG3036|consen 175 RIMESGSELSKTVATFILQKILLDDVGLYYICQTAERFSAVALVLGKMVFQLV--SMPSPRLLKHVIRCYLRL 245 (293)
T ss_pred HHHhcccHHHHHHHHHHHHHHhhccccHHHHHHhHHHHHHHHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHh
Confidence 999999999999999999987654421 222222 4555555554 445566655555555544
No 109
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.56 E-value=0.041 Score=54.82 Aligned_cols=42 Identities=12% Similarity=0.143 Sum_probs=29.6
Q ss_pred HHHHHhhhCCHHHHHHHHHHHHHhhcCChhhhhhhhhHHHHHHHHh
Q 017249 283 GLLRLTVEGTFEAQERARTLLDLLRDTPQEKRLSSSVLEKIVYDIA 328 (375)
Q Consensus 283 ~L~~ll~~~~~~~~~~A~~~L~~l~~~~~~~~~~~g~~~~l~~~l~ 328 (375)
.+++.+++.|+.+|+.|..++..+...+.-+ ..++.|+..|.
T Consensus 354 tIleCL~DpD~SIkrralELs~~lvn~~Nv~----~mv~eLl~fL~ 395 (866)
T KOG1062|consen 354 TILECLKDPDVSIKRRALELSYALVNESNVR----VMVKELLEFLE 395 (866)
T ss_pred HHHHHhcCCcHHHHHHHHHHHHHHhccccHH----HHHHHHHHHHH
Confidence 4566777888888888888888887766321 24556666665
No 110
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=97.53 E-value=0.011 Score=59.66 Aligned_cols=233 Identities=15% Similarity=0.110 Sum_probs=139.3
Q ss_pred hHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCChhhH-HHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhccChh
Q 017249 23 KQALIEELSDKLINGDLETKIEAARDIRKVVKKSSLKTR-SEFAAAGVVQPLVLMLVSPNLDAIESSLLALLNLAVRNER 101 (375)
Q Consensus 23 ~~~~l~~Lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~-~~~~~~g~v~~Lv~~L~~~~~~~~~~a~~~L~~L~~~~~~ 101 (375)
....+..++++|.+.+.++|..|+++++-+...- ++.+ +.+ ++.|+.-+-++....+.-+.-.|......-++
T Consensus 45 e~kvv~~lLklL~D~ngEVQnlAVKClg~lvsKv-ke~~le~~-----ve~L~~~~~s~keq~rdissi~Lktvi~nl~P 118 (1233)
T KOG1824|consen 45 ERKVVKMLLKLLEDKNGEVQNLAVKCLGPLVSKV-KEDQLETI-----VENLCSNMLSGKEQLRDISSIGLKTVIANLPP 118 (1233)
T ss_pred hhHHHHHHHHHHhccCcHHHHHHHHHHHHHHhhc-hHHHHHHH-----HHHHhhhhccchhhhccHHHHHHHHHHhcCCC
Confidence 3456788889999999999999999999998666 3332 222 33444332222223333222222222222222
Q ss_pred hHHHHHHcCChHHHHHhhcCC------ChHHHHHHHHHHHHhhccC-CChhHHHhcCChHHHHHHhccCCHHHHHHHHHH
Q 017249 102 NKVKIATAGAIPPLVELLKFQ------NGTLRELAAAAILTLSAAA-PNKPAIAASGAAPLLVQILHSGSVQGRVDAVTA 174 (375)
Q Consensus 102 ~r~~i~~~g~i~~Lv~lL~~~------~~~~~~~a~~~L~~Ls~~~-~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~ 174 (375)
.-.......+++.+...|... ...++..++..+..+-..- .--.- .+.+.+..++.-+.++...++..++.+
T Consensus 119 ~~~~~la~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~lsr~g~ll~~-fh~~il~~l~~ql~s~R~aVrKkai~~ 197 (1233)
T KOG1824|consen 119 SSSSFLAATVCKRITPKLKQAISKQEDVSAIKCEVLDILADVLSRFGTLLPN-FHLSILKCLLPQLQSPRLAVRKKAITA 197 (1233)
T ss_pred ccccccccHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhhcccCcc-hHHHHHHHHhhcccChHHHHHHHHHHH
Confidence 333344444444554444322 3336666666665543321 11111 456677788888888889999999999
Q ss_pred HHHhccCCCCchhhhhcCCcHHHHHHhhhcccchHHHHHHHHHHHHhhCChhhhHHHhhccCcHHHHHHHh---ccCChH
Q 017249 175 LHYLSTCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETV---EDGSLV 251 (375)
Q Consensus 175 L~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~Lv~lL---~~~~~~ 251 (375)
|..|+..-.. ..-.+.+..|++-|....... ....-..+|..++.....|.--. ....++.+.++. ...+++
T Consensus 198 l~~la~~~~~---~ly~~li~~Ll~~L~~~~q~~-~~rt~Iq~l~~i~r~ag~r~~~h-~~~ivp~v~~y~~~~e~~dDE 272 (1233)
T KOG1824|consen 198 LGHLASSCNR---DLYVELIEHLLKGLSNRTQMS-ATRTYIQCLAAICRQAGHRFGSH-LDKIVPLVADYCNKIEEDDDE 272 (1233)
T ss_pred HHHHHHhcCH---HHHHHHHHHHHhccCCCCchH-HHHHHHHHHHHHHHHhcchhhcc-cchhhHHHHHHhcccccCcHH
Confidence 9999864221 111246667777676654332 23445566666665554444333 356788899998 567789
Q ss_pred HHHHHHHHHHHhcccC
Q 017249 252 STQHAVGALLSLCQSC 267 (375)
Q Consensus 252 ~~~~a~~~L~~l~~~~ 267 (375)
+++.++.++..+...+
T Consensus 273 LrE~~lQale~fl~rc 288 (1233)
T KOG1824|consen 273 LREYCLQALESFLRRC 288 (1233)
T ss_pred HHHHHHHHHHHHHHhC
Confidence 9999999998887665
No 111
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=97.53 E-value=0.041 Score=54.48 Aligned_cols=254 Identities=16% Similarity=0.149 Sum_probs=161.9
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHhhCChhh--HHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhccChhhHHH
Q 017249 28 EELSDKLINGDLETKIEAARDIRKVVKKSSLKT--RSEFAAAGVVQPLVLMLVSPNLDAIESSLLALLNLAVRNERNKVK 105 (375)
Q Consensus 28 ~~Lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~--~~~~~~~g~v~~Lv~~L~~~~~~~~~~a~~~L~~L~~~~~~~r~~ 105 (375)
...+..|++.++.++..|+..+..++.-- ..+ -+.+...|+ .|.+.|....+++.-..+.+|..+... -.-..
T Consensus 802 stiL~rLnnksa~vRqqaadlis~la~Vl-ktc~ee~~m~~lGv--vLyEylgeeypEvLgsILgAikaI~nv--igm~k 876 (1172)
T KOG0213|consen 802 STILWRLNNKSAKVRQQAADLISSLAKVL-KTCGEEKLMGHLGV--VLYEYLGEEYPEVLGSILGAIKAIVNV--IGMTK 876 (1172)
T ss_pred HHHHHHhcCCChhHHHHHHHHHHHHHHHH-HhccHHHHHHHhhH--HHHHhcCcccHHHHHHHHHHHHHHHHh--ccccc
Confidence 34445677899999999999998887654 222 223444454 367889888888877666666665531 11111
Q ss_pred HH--HcCChHHHHHhhcCCChHHHHHHHHHHHHhhccCCC----hhHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhc
Q 017249 106 IA--TAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPN----KPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLS 179 (375)
Q Consensus 106 i~--~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~----~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~~L~ 179 (375)
+. -.+.+|.|...|++.+..++++++..+..++...+- +..+. +-=-|+++|++.+.+++.+|..++..++
T Consensus 877 m~pPi~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWMR---IcfeLlelLkahkK~iRRaa~nTfG~Ia 953 (1172)
T KOG0213|consen 877 MTPPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMR---ICFELLELLKAHKKEIRRAAVNTFGYIA 953 (1172)
T ss_pred cCCChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHH---HHHHHHHHHHHHHHHHHHHHHhhhhHHH
Confidence 11 257789999999999999999999999999977542 33332 2234788899999999999999999886
Q ss_pred cCCCCchhhhhcCCcHHHHHHhhhcccchHHHHHHHHHHHHhhCChhhhHHHhhcc----CcHHHHHHHhccCChHHHHH
Q 017249 180 TCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSD----GGILTLVETVEDGSLVSTQH 255 (375)
Q Consensus 180 ~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~----g~v~~Lv~lL~~~~~~~~~~ 255 (375)
.. +.-.+++..|++-|... .-+...+..+. ++ ++.+. ..+|.|+.=-..++..+|.-
T Consensus 954 ka------IGPqdVLatLlnnLkvq----eRq~RvcTtva-Ia--------IVaE~c~pFtVLPalmneYrtPe~nVQnG 1014 (1172)
T KOG0213|consen 954 KA------IGPQDVLATLLNNLKVQ----ERQNRVCTTVA-IA--------IVAETCGPFTVLPALMNEYRTPEANVQNG 1014 (1172)
T ss_pred Hh------cCHHHHHHHHHhcchHH----HHHhchhhhhh-hh--------hhhhhcCchhhhHHHHhhccCchhHHHHh
Confidence 42 11112233333333321 11111222111 11 11122 23444444445677888998
Q ss_pred HHHHHHHhcccCcHHHHHHHHHcCChHHHHHHhhhCCHHHHHHHHHHHHHhhcCC
Q 017249 256 AVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDTP 310 (375)
Q Consensus 256 a~~~L~~l~~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~~~~~A~~~L~~l~~~~ 310 (375)
.+.+|+.+-..-.+-.++.+ .-+.|.|-..+.+.|+.-|.-|..++++++-..
T Consensus 1015 VLkalsf~FeyigemskdYi--yav~PlleDAlmDrD~vhRqta~~~I~Hl~Lg~ 1067 (1172)
T KOG0213|consen 1015 VLKALSFMFEYIGEMSKDYI--YAVTPLLEDALMDRDLVHRQTAMNVIKHLALGV 1067 (1172)
T ss_pred HHHHHHHHHHHHHHHhhhHH--HHhhHHHHHhhccccHHHHHHHHHHHHHHhcCC
Confidence 88888887665433333333 345667777888899999999999999998665
No 112
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=97.53 E-value=0.011 Score=56.61 Aligned_cols=275 Identities=18% Similarity=0.161 Sum_probs=141.9
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHhhC-ChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhccChhhHHH
Q 017249 27 IEELSDKLINGDLETKIEAARDIRKVVKKS-SLKTRSEFAAAGVVQPLVLMLVSPNLDAIESSLLALLNLAVRNERNKVK 105 (375)
Q Consensus 27 l~~Lv~~L~s~~~~~~~~a~~~l~~l~~~~-~~~~~~~~~~~g~v~~Lv~~L~~~~~~~~~~a~~~L~~L~~~~~~~r~~ 105 (375)
.|.|=.+|++.-..+..++++.+..++..+ .++..+ ..+..|-.+|+++....+-.|+++|..|+...|+ +..
T Consensus 266 rpfL~~wls~k~emV~lE~Ar~v~~~~~~nv~~~~~~-----~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~-kv~ 339 (898)
T COG5240 266 RPFLNSWLSDKFEMVFLEAARAVCALSEENVGSQFVD-----QTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQ-KVS 339 (898)
T ss_pred HHHHHHHhcCcchhhhHHHHHHHHHHHHhccCHHHHH-----HHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCc-eee
Confidence 445555666667888999999999988766 122221 2467788889999999999999999999975432 111
Q ss_pred HHHc----------C--ChHHHHHhhcCCChHHHH-------------------HHHHHHHHhhccCCChhHHHhcCChH
Q 017249 106 IATA----------G--AIPPLVELLKFQNGTLRE-------------------LAAAAILTLSAAAPNKPAIAASGAAP 154 (375)
Q Consensus 106 i~~~----------g--~i~~Lv~lL~~~~~~~~~-------------------~a~~~L~~Ls~~~~~~~~i~~~~~l~ 154 (375)
.+.. . ..-++..+|+.+..+... .++.++..|+..-+.++. -.+.
T Consensus 340 vcN~evEsLIsd~Nr~IstyAITtLLKTGt~e~idrLv~~I~sfvhD~SD~FKiI~ida~rsLsl~Fp~k~~----s~l~ 415 (898)
T COG5240 340 VCNKEVESLISDENRTISTYAITTLLKTGTEETIDRLVNLIPSFVHDMSDGFKIIAIDALRSLSLLFPSKKL----SYLD 415 (898)
T ss_pred ecChhHHHHhhcccccchHHHHHHHHHcCchhhHHHHHHHHHHHHHhhccCceEEeHHHHHHHHhhCcHHHH----HHHH
Confidence 1110 0 011222233332222222 222222222222111111 1123
Q ss_pred HHHHHhc-cCCHHHHHHHHHHHHHhccC-CCCchhhhhcCCcHHHHHHhhhcccchHHHHHHHHHHHHhhC-ChhhhHHH
Q 017249 155 LLVQILH-SGSVQGRVDAVTALHYLSTC-KENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSS-SEEGRIAI 231 (375)
Q Consensus 155 ~L~~lL~-~~~~~~~~~a~~~L~~L~~~-~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~-~~~~~~~~ 231 (375)
.|...|. .+..+.+..+..+|..+... |+.+.. ++..|...+.++.. .+-+.++|.-|-. .|....
T Consensus 416 FL~~~L~~eGg~eFK~~~Vdaisd~~~~~p~skEr-----aLe~LC~fIEDcey----~~I~vrIL~iLG~EgP~a~~-- 484 (898)
T COG5240 416 FLGSSLLQEGGLEFKKYMVDAISDAMENDPDSKER-----ALEVLCTFIEDCEY----HQITVRILGILGREGPRAKT-- 484 (898)
T ss_pred HHHHHHHhcccchHHHHHHHHHHHHHhhCchHHHH-----HHHHHHHHHhhcch----hHHHHHHHHHhcccCCCCCC--
Confidence 3333322 22334455555554444332 222222 22334444444322 1223444444332 111110
Q ss_pred hhccCcHHHHHHHhccCChHHHHHHHHHHHHhcccCcHHHHHHHHHcCChHHHHHHhhhCCHHHHHHHHHHHHHhhcCCh
Q 017249 232 TNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDTPQ 311 (375)
Q Consensus 232 ~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~ 311 (375)
....+..+...+--.+..+|..|+.+|..++-+..+ .+....+...|-+.+.+.|.++|..|..+|+++.....
T Consensus 485 --P~~yvrhIyNR~iLEN~ivRsaAv~aLskf~ln~~d----~~~~~sv~~~lkRclnD~DdeVRdrAsf~l~~~~~~da 558 (898)
T COG5240 485 --PGKYVRHIYNRLILENNIVRSAAVQALSKFALNISD----VVSPQSVENALKRCLNDQDDEVRDRASFLLRNMRLSDA 558 (898)
T ss_pred --cchHHHHHHHHHHHhhhHHHHHHHHHHHHhccCccc----cccHHHHHHHHHHHhhcccHHHHHHHHHHHHhhhhhhh
Confidence 112344444444445677899999999877765422 12223344566678899999999999999999985553
Q ss_pred h-hhh---hhhhHHHHHHHHh
Q 017249 312 E-KRL---SSSVLEKIVYDIA 328 (375)
Q Consensus 312 ~-~~~---~~g~~~~l~~~l~ 328 (375)
. .++ ..|-+|.+...+.
T Consensus 559 ~~pl~~sd~~~dipsle~~l~ 579 (898)
T COG5240 559 CEPLFSSDELGDIPSLELELI 579 (898)
T ss_pred hhccccccccCCcchhHHhhh
Confidence 2 223 3445565555443
No 113
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.49 E-value=0.018 Score=57.10 Aligned_cols=268 Identities=16% Similarity=0.104 Sum_probs=172.1
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhccChhhHHHH
Q 017249 27 IEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIESSLLALLNLAVRNERNKVKI 106 (375)
Q Consensus 27 l~~Lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~~~~~~~~~a~~~L~~L~~~~~~~r~~i 106 (375)
-..|..+|.|.....+.+|++-|..+.... .... ...|..|+...+.+.++++-.---|...+...++.. .
T Consensus 37 ~~dL~~lLdSnkd~~KleAmKRIia~iA~G-~dvS------~~Fp~VVKNVaskn~EVKkLVyvYLlrYAEeqpdLA-L- 107 (968)
T KOG1060|consen 37 HDDLKQLLDSNKDSLKLEAMKRIIALIAKG-KDVS------LLFPAVVKNVASKNIEVKKLVYVYLLRYAEEQPDLA-L- 107 (968)
T ss_pred hHHHHHHHhccccHHHHHHHHHHHHHHhcC-CcHH------HHHHHHHHHhhccCHHHHHHHHHHHHHHhhcCCCce-e-
Confidence 357889999999999999998666665544 2322 347889999999999999988877877776443221 1
Q ss_pred HHcCChHHHHHhhcCCChHHHHHHHHHHHHhhccCCChhHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccC-CCCc
Q 017249 107 ATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTC-KENS 185 (375)
Q Consensus 107 ~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~~L~~~-~~~~ 185 (375)
=-|..+-+-|+++++.+|..|+.+|..+ |..+...-.+-++-++..+.++.++..|+.+|-.|=+- ++.+
T Consensus 108 ---LSIntfQk~L~DpN~LiRasALRvlSsI------Rvp~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~e~k 178 (968)
T KOG1060|consen 108 ---LSINTFQKALKDPNQLIRASALRVLSSI------RVPMIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLDPEQK 178 (968)
T ss_pred ---eeHHHHHhhhcCCcHHHHHHHHHHHHhc------chhhHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCChhhH
Confidence 1256778888999999998888888776 22233333344455566778899999999999988654 3444
Q ss_pred hhhhhcCCcHHHHHHhhhcccchHHHHHHHHHHHHhhCChhhhHHHhhccCcHHHHHHHhccCChHHHHHHHHHHHHhcc
Q 017249 186 SPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQ 265 (375)
Q Consensus 186 ~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~ 265 (375)
.++ +..+-.+|.+. ++.+.-.|..++..+|. ++-.++ ++-...|.++|.+-++.-|-..+..|..-|.
T Consensus 179 ~qL-----~e~I~~LLaD~--splVvgsAv~AF~evCP---erldLI--HknyrklC~ll~dvdeWgQvvlI~mL~RYAR 246 (968)
T KOG1060|consen 179 DQL-----EEVIKKLLADR--SPLVVGSAVMAFEEVCP---ERLDLI--HKNYRKLCRLLPDVDEWGQVVLINMLTRYAR 246 (968)
T ss_pred HHH-----HHHHHHHhcCC--CCcchhHHHHHHHHhch---hHHHHh--hHHHHHHHhhccchhhhhHHHHHHHHHHHHH
Confidence 443 33444555554 33555556665555553 233344 4678888888887777777777777766654
Q ss_pred cCc--HHHHHHHHH-cC------------------------ChHHHHHHhhhCCHHHHHHHHHHHHHhhcCChhhhhhhh
Q 017249 266 SCR--DKYRQLILK-EG------------------------AIPGLLRLTVEGTFEAQERARTLLDLLRDTPQEKRLSSS 318 (375)
Q Consensus 266 ~~~--~~~~~~l~~-~g------------------------~v~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~~~~~~~g 318 (375)
..- |.......+ .| .+...-.++.+.++.+-..++.+..+++-..+ ...
T Consensus 247 ~~l~~P~~~~~~~e~n~~~~~~~~~~~~~~~P~~~d~D~~lLL~stkpLl~S~n~sVVmA~aql~y~lAP~~~----~~~ 322 (968)
T KOG1060|consen 247 HQLPDPTVVDSSLEDNGRSCNLKDKYNEIRTPYVNDPDLKLLLQSTKPLLQSRNPSVVMAVAQLFYHLAPKNQ----VTK 322 (968)
T ss_pred hcCCCccccccccccCcccccccccccccCCCcccCccHHHHHHhccHHHhcCCcHHHHHHHhHHHhhCCHHH----HHH
Confidence 211 100000000 01 11222235667778888888888888875542 234
Q ss_pred hHHHHHHHHh
Q 017249 319 VLEKIVYDIA 328 (375)
Q Consensus 319 ~~~~l~~~l~ 328 (375)
++++|++.|.
T Consensus 323 i~kaLvrLLr 332 (968)
T KOG1060|consen 323 IAKALVRLLR 332 (968)
T ss_pred HHHHHHHHHh
Confidence 6788888775
No 114
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=97.46 E-value=0.0084 Score=52.28 Aligned_cols=220 Identities=17% Similarity=0.145 Sum_probs=136.6
Q ss_pred CChHHHHHHHHHHHHhhccCC---ChhHHH--hcCChHHHHHHh-------ccCC-----HHHHHHHHHHHHHhccCCCC
Q 017249 122 QNGTLRELAAAAILTLSAAAP---NKPAIA--ASGAAPLLVQIL-------HSGS-----VQGRVDAVTALHYLSTCKEN 184 (375)
Q Consensus 122 ~~~~~~~~a~~~L~~Ls~~~~---~~~~i~--~~~~l~~L~~lL-------~~~~-----~~~~~~a~~~L~~L~~~~~~ 184 (375)
-+++.|+.|+ ..|+...+ +-..+. ..|.+..|++=+ ..++ ..-..+|+..|..++++++.
T Consensus 7 ~~~~~Re~Al---~eLsk~r~~~~~La~~LW~s~G~i~~LLqEIisiYp~l~~~~Lt~~~snRVcnaLaLlQ~vAshpet 83 (262)
T PF04078_consen 7 CNPETRENAL---LELSKKRESFPDLAPLLWHSFGTIAALLQEIISIYPALSPPNLTARQSNRVCNALALLQCVASHPET 83 (262)
T ss_dssp SSHHHHHHHH---HHHHHTCCC-TTHHHHHHTSTTHHHHHHHHHHGGGGGTTTT---HHHHHHHHHHHHHHHHHHH-TTT
T ss_pred cCcchHHHHH---HHHHHhhhcccchhHHHHcCCChHHHHHHHHHHHcccCCCcccCHHHHHHHHHHHHHHHHHHcChHH
Confidence 3577777664 45554433 222222 347676665532 2222 23356777778888999999
Q ss_pred chhhhhcCCcHHHHHHhhhccc---chHHHHHHHHHHHHhhC--ChhhhHHHhhccCcHHHHHHHhccCChHHHHHHHHH
Q 017249 185 SSPILDATAVPPLINLLKDCKK---YSKFAEKATALLEILSS--SEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGA 259 (375)
Q Consensus 185 ~~~i~~~g~i~~Lv~ll~~~~~---~~~~~~~a~~~L~~l~~--~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~ 259 (375)
+..++++...-.|.-++...+. .+.++..++++++.|.. +++....+. ....+|..+..++.++...+..|..+
T Consensus 84 r~~Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl-~tEiiplcLr~me~GselSKtvAtfI 162 (262)
T PF04078_consen 84 RMPFLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLL-QTEIIPLCLRIMEFGSELSKTVATFI 162 (262)
T ss_dssp HHHHHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHH-CTTHHHHHHHHHHHS-HHHHHHHHHH
T ss_pred HHHHHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHH-hhchHHHHHHHHHhccHHHHHHHHHH
Confidence 9999998877777777765432 34677889999999987 466677777 68999999999999999999999999
Q ss_pred HHHhcccCcHHHHHHH-------HH-cCChHHHHH-HhhhCCHHHHHHHHHHHHHhhcCChh-hhhhhhhHHHHHHH--H
Q 017249 260 LLSLCQSCRDKYRQLI-------LK-EGAIPGLLR-LTVEGTFEAQERARTLLDLLRDTPQE-KRLSSSVLEKIVYD--I 327 (375)
Q Consensus 260 L~~l~~~~~~~~~~~l-------~~-~g~v~~L~~-ll~~~~~~~~~~A~~~L~~l~~~~~~-~~~~~g~~~~l~~~--l 327 (375)
+..+-.++ .+...+ .. ..++..++. +....+++.-++..++--.|+++++. .+.. ..+|..+.. .
T Consensus 163 lqKIL~dd--~GL~yiC~t~eRf~av~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsdnprar~aL~-~~LP~~Lrd~~f 239 (262)
T PF04078_consen 163 LQKILLDD--VGLNYICQTAERFFAVAMVLNKMVEQLVKQPSPRLLKHIIRCYLRLSDNPRAREALR-QCLPDQLRDGTF 239 (262)
T ss_dssp HHHHHHSH--HHHHHHTSSHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHTTSTTHHHHHH-HHS-GGGTSSTT
T ss_pred HHHHHcch--hHHHHHhcCHHHHHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHccCHHHHHHHH-HhCcHHHhcHHH
Confidence 98887654 222222 22 234444444 55678999999999999999999853 1111 122221111 0
Q ss_pred hhcCCChHHHHHHHHHHHHHH
Q 017249 328 AARVDGADKAAETAKRLLQDM 348 (375)
Q Consensus 328 ~~~~~g~~~~~~~a~~~l~~l 348 (375)
.....+++..+++-.+++.++
T Consensus 240 ~~~l~~D~~~k~~l~qLl~nl 260 (262)
T PF04078_consen 240 SNILKDDPSTKRWLQQLLSNL 260 (262)
T ss_dssp TTGGCS-HHHHHHHHHHHHHT
T ss_pred HHHHhcCHHHHHHHHHHHHHh
Confidence 000123466777776666654
No 115
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=97.44 E-value=0.00056 Score=50.88 Aligned_cols=64 Identities=25% Similarity=0.264 Sum_probs=55.7
Q ss_pred HHHHHHHHHHhhccChhhHHHHHHcCChHHHHHhhc--CCChHHHHHHHHHHHHhhccC-CChhHHH
Q 017249 85 IESSLLALLNLAVRNERNKVKIATAGAIPPLVELLK--FQNGTLRELAAAAILTLSAAA-PNKPAIA 148 (375)
Q Consensus 85 ~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~--~~~~~~~~~a~~~L~~Ls~~~-~~~~~i~ 148 (375)
+...++.|+|++..++.+++.+.+.|++|.+++... ..+|.++++|+.++.||+... +++..+.
T Consensus 3 K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~ 69 (102)
T PF09759_consen 3 KRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIA 69 (102)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 556789999999999999999999999999999764 448999999999999999875 4777665
No 116
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=97.41 E-value=0.011 Score=50.70 Aligned_cols=147 Identities=12% Similarity=0.062 Sum_probs=109.8
Q ss_pred HHHHHHHHHHHHHhccCCCCchhhhhcCCcHHHHHHhhhc---ccchHHHHHHHHHHHHhhCC--hhhhHHHhhccCcHH
Q 017249 165 VQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDC---KKYSKFAEKATALLEILSSS--EEGRIAITNSDGGIL 239 (375)
Q Consensus 165 ~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~---~~~~~~~~~a~~~L~~l~~~--~~~~~~~~~~~g~v~ 239 (375)
..-..+|+..|..+++.++.+..++++...-.+-.+|..+ .+.+.++..++++++.|... .+..+.+. ..++|+
T Consensus 93 snRVcnaL~LlQcvASHpdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl-~TeIVP 171 (293)
T KOG3036|consen 93 SNRVCNALALLQCVASHPDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLL-TTEIVP 171 (293)
T ss_pred cchHHHHHHHHHHHhcCcchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHH-HhhhHH
Confidence 3446788888999999999999999987666666666543 34557888899999999864 45566666 689999
Q ss_pred HHHHHhccCChHHHHHHHHHHHHhcccCcH--HHH---HHHHH-cCChHHHHH-HhhhCCHHHHHHHHHHHHHhhcCChh
Q 017249 240 TLVETVEDGSLVSTQHAVGALLSLCQSCRD--KYR---QLILK-EGAIPGLLR-LTVEGTFEAQERARTLLDLLRDTPQE 312 (375)
Q Consensus 240 ~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~--~~~---~~l~~-~g~v~~L~~-ll~~~~~~~~~~A~~~L~~l~~~~~~ 312 (375)
..+..+..|++..+..|..++..+..++.. -.+ +.+.. .-++..++. +...++++.-++++++.-+|+.+++-
T Consensus 172 lCLrime~GSelSKtvA~fIlqKIlldD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsdnpra 251 (293)
T KOG3036|consen 172 LCLRIMESGSELSKTVATFILQKILLDDVGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSDNPRA 251 (293)
T ss_pred HHHHHHhcccHHHHHHHHHHHHHHhhccccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHH
Confidence 999999999999999999999888776531 111 11212 223344443 56678999999999999999998843
No 117
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.41 E-value=0.011 Score=57.54 Aligned_cols=268 Identities=17% Similarity=0.144 Sum_probs=162.4
Q ss_pred hHHHHHhhCCCCHHHHHHHHHHHHHhhccCh------hhHHHHHHcCChHHHHHhhcCCChHHHHHHHHHHHHhhccCCC
Q 017249 70 VQPLVLMLVSPNLDAIESSLLALLNLAVRNE------RNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPN 143 (375)
Q Consensus 70 v~~Lv~~L~~~~~~~~~~a~~~L~~L~~~~~------~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~ 143 (375)
....++.+++.+..++..|++.+.-+....+ .....+. -.++..+...+.+.+-.+|..|+.+|..+-...+
T Consensus 236 Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e~~e~kl~-D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSe- 313 (823)
T KOG2259|consen 236 YSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERESEEEKLK-DAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSE- 313 (823)
T ss_pred HHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccchhhhhhhH-HHHHHHHHHHHhcCceeeeehHHHHhchHHHhHH-
Confidence 5567889999999999999877766654331 1111222 2356778888888888888888888877643211
Q ss_pred hhHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHh--cc------------CCCCchhhhhcCCcHHHHHHhhhcccchH
Q 017249 144 KPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYL--ST------------CKENSSPILDATAVPPLINLLKDCKKYSK 209 (375)
Q Consensus 144 ~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~~L--~~------------~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~ 209 (375)
.+.....=+.++.-++.. ....+.......+. ++ .++....++.+|+--.++.-+.+. --.
T Consensus 314 --e~i~QTLdKKlms~lRRk-r~ahkrpk~l~s~GewSsGk~~~advpsee~d~~~~siI~sGACGA~VhGlEDE--f~E 388 (823)
T KOG2259|consen 314 --EIIQQTLDKKLMSRLRRK-RTAHKRPKALYSSGEWSSGKEWNADVPSEEDDEEEESIIPSGACGALVHGLEDE--FYE 388 (823)
T ss_pred --HHHHHHHHHHHhhhhhhh-hhcccchHHHHhcCCcccCccccccCchhhccccccccccccccceeeeechHH--HHH
Confidence 011000011111111100 00111111222222 00 122344567778888888888775 346
Q ss_pred HHHHHHHHHHHhhCChhhhHHHhhccCcHHHHHHHhccCChHHHHHHHHHHHHhcccCcHHHHHHHHHcCChHHHHHHhh
Q 017249 210 FAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTV 289 (375)
Q Consensus 210 ~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~g~v~~L~~ll~ 289 (375)
++.+|...++.|+.+...- ....++.|+.++.+.-..+|..|+.+|..++.+- .++..-++.++..+.
T Consensus 389 VR~AAV~Sl~~La~ssP~F-----A~~aldfLvDMfNDE~~~VRL~ai~aL~~Is~~l-------~i~eeql~~il~~L~ 456 (823)
T KOG2259|consen 389 VRRAAVASLCSLATSSPGF-----AVRALDFLVDMFNDEIEVVRLKAIFALTMISVHL-------AIREEQLRQILESLE 456 (823)
T ss_pred HHHHHHHHHHHHHcCCCCc-----HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHh-------eecHHHHHHHHHHHH
Confidence 8899999999998653321 1246788999999988999999999999987653 245566788888999
Q ss_pred hCCHHHHHHHHHHHHHhhcCChhhhhhhhhHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHH---HHHHhHHHHHH
Q 017249 290 EGTFEAQERARTLLDLLRDTPQEKRLSSSVLEKIVYDIAARVDGADKAAETAKRLLQDMVQR---SMELSMTRIQQ 362 (375)
Q Consensus 290 ~~~~~~~~~A~~~L~~l~~~~~~~~~~~g~~~~l~~~l~~~~~g~~~~~~~a~~~l~~l~~~---s~~~~~~~~~~ 362 (375)
+.++++|+..-.+|.++.-...+ .+. -.+.+|+..|..- |+=+...-+++..+-+. -.-.+|++|+.
T Consensus 457 D~s~dvRe~l~elL~~~~~~d~~-~i~-m~v~~lL~~L~ky----PqDrd~i~~cm~~iGqnH~~lv~s~m~rfl~ 526 (823)
T KOG2259|consen 457 DRSVDVREALRELLKNARVSDLE-CID-MCVAHLLKNLGKY----PQDRDEILRCMGRIGQNHRRLVLSNMGRFLE 526 (823)
T ss_pred hcCHHHHHHHHHHHHhcCCCcHH-HHH-HHHHHHHHHhhhC----CCCcHHHHHHHHHHhccChhhHHHHHHHHHH
Confidence 99999999998888876544422 111 1344454444322 23334455566666432 55667777773
No 118
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=97.40 E-value=0.0062 Score=52.83 Aligned_cols=201 Identities=18% Similarity=0.169 Sum_probs=120.0
Q ss_pred HHhhHhHHHHHHHHhc--CCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhc
Q 017249 20 NQRKQALIEELSDKLI--NGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIESSLLALLNLAV 97 (375)
Q Consensus 20 ~~~~~~~l~~Lv~~L~--s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~~~~~~~~~a~~~L~~L~~ 97 (375)
+....+.++.|+.-|. +..|-++.+|..+|..+. .+ ..++.+-++.+++..++++.+..++..+-.
T Consensus 62 Q~~~~~Av~~l~~vl~desq~pmvRhEAaealga~~-~~-----------~~~~~l~k~~~dp~~~v~ETc~lAi~rle~ 129 (289)
T KOG0567|consen 62 QMQDEDAVPVLVEVLLDESQEPMVRHEAAEALGAIG-DP-----------ESLEILTKYIKDPCKEVRETCELAIKRLEW 129 (289)
T ss_pred hhccchhhHHHHHHhcccccchHHHHHHHHHHHhhc-ch-----------hhHHHHHHHhcCCccccchHHHHHHHHHHH
Confidence 4455667888887776 445667778888887776 22 234555555555555555555555554443
Q ss_pred cChhhH----HHHH--------HcCChHHHHHhhcCC-ChHH-HHHHHHHHHHhhccCCChhHHHhcCChHHHHHHhccC
Q 017249 98 RNERNK----VKIA--------TAGAIPPLVELLKFQ-NGTL-RELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHSG 163 (375)
Q Consensus 98 ~~~~~r----~~i~--------~~g~i~~Lv~lL~~~-~~~~-~~~a~~~L~~Ls~~~~~~~~i~~~~~l~~L~~lL~~~ 163 (375)
.+.-.. .... ..+-+..+-..|... .+.. |..|...|.|+ +....|..|++-+..+
T Consensus 130 ~~~~~~~~~~~p~~SvdPa~p~~~ssv~~lr~~lld~t~~l~~Ry~amF~LRn~----------g~EeaI~al~~~l~~~ 199 (289)
T KOG0567|consen 130 KDIIDKIANSSPYISVDPAPPANLSSVHELRAELLDETKPLFERYRAMFYLRNI----------GTEEAINALIDGLADD 199 (289)
T ss_pred hhccccccccCccccCCCCCccccccHHHHHHHHHhcchhHHHHHhhhhHhhcc----------CcHHHHHHHHHhcccc
Confidence 211000 0000 000111111111111 1111 22222222222 1233566777777777
Q ss_pred CHHHHHHHHHHHHHhccCCCCchhhhhcCCcHHHHHHhhhcccchHHHHHHHHHHHHhhCChhhhHHHhhccCcHHHHHH
Q 017249 164 SVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVE 243 (375)
Q Consensus 164 ~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~Lv~ 243 (375)
+.-.+..++.++..| ...-.++.|.+.|.+..+++.++..|..+|+.++ ...+++.|..
T Consensus 200 SalfrhEvAfVfGQl----------~s~~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa-----------~e~~~~vL~e 258 (289)
T KOG0567|consen 200 SALFRHEVAFVFGQL----------QSPAAIPSLIKVLLDETEHPMVRHEAAEALGAIA-----------DEDCVEVLKE 258 (289)
T ss_pred hHHHHHHHHHHHhhc----------cchhhhHHHHHHHHhhhcchHHHHHHHHHHHhhc-----------CHHHHHHHHH
Confidence 777888888888766 3345788999999888888888999999998765 5678888999
Q ss_pred HhccCChHHHHHHHHHHHHh
Q 017249 244 TVEDGSLVSTQHAVGALLSL 263 (375)
Q Consensus 244 lL~~~~~~~~~~a~~~L~~l 263 (375)
++.+..+.+++.+..+|..+
T Consensus 259 ~~~D~~~vv~esc~valdm~ 278 (289)
T KOG0567|consen 259 YLGDEERVVRESCEVALDML 278 (289)
T ss_pred HcCCcHHHHHHHHHHHHHHH
Confidence 99988888888887777554
No 119
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=97.37 E-value=0.011 Score=51.63 Aligned_cols=221 Identities=17% Similarity=0.152 Sum_probs=141.2
Q ss_pred CHHHHHHHHHHHHHhhccChhhHHHHHH-cCChHHHHHhh-------cCCC--h---HHHHHHHHHHHHhhccCCChhHH
Q 017249 81 NLDAIESSLLALLNLAVRNERNKVKIAT-AGAIPPLVELL-------KFQN--G---TLRELAAAAILTLSAAAPNKPAI 147 (375)
Q Consensus 81 ~~~~~~~a~~~L~~L~~~~~~~r~~i~~-~g~i~~Lv~lL-------~~~~--~---~~~~~a~~~L~~Ls~~~~~~~~i 147 (375)
+++.++.|+..|..--...++....+-. .|.+..|++=+ ..++ + .-..+|+..|-.++.+++.+..+
T Consensus 8 ~~~~Re~Al~eLsk~r~~~~~La~~LW~s~G~i~~LLqEIisiYp~l~~~~Lt~~~snRVcnaLaLlQ~vAshpetr~~F 87 (262)
T PF04078_consen 8 NPETRENALLELSKKRESFPDLAPLLWHSFGTIAALLQEIISIYPALSPPNLTARQSNRVCNALALLQCVASHPETRMPF 87 (262)
T ss_dssp SHHHHHHHHHHHHHTCCC-TTHHHHHHTSTTHHHHHHHHHHGGGGGTTTT---HHHHHHHHHHHHHHHHHHH-TTTHHHH
T ss_pred CcchHHHHHHHHHHhhhcccchhHHHHcCCChHHHHHHHHHHHcccCCCcccCHHHHHHHHHHHHHHHHHHcChHHHHHH
Confidence 5677888888877765545555555555 45555554422 2221 1 22456777778889999999999
Q ss_pred HhcCChHHHHHHhccCC-----HHHHHHHHHHHHHhccCC--CCchhhhhcCCcHHHHHHhhhcccchHHHHHHHHHHHH
Q 017249 148 AASGAAPLLVQILHSGS-----VQGRVDAVTALHYLSTCK--ENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEI 220 (375)
Q Consensus 148 ~~~~~l~~L~~lL~~~~-----~~~~~~a~~~L~~L~~~~--~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~ 220 (375)
......-.|...|+..+ ...+-.+++++..|...+ +....+.+.+.+|..++.+..+++- -+-.|..++..
T Consensus 88 l~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~Gsel--SKtvAtfIlqK 165 (262)
T PF04078_consen 88 LKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFGSEL--SKTVATFILQK 165 (262)
T ss_dssp HHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS-HH--HHHHHHHHHHH
T ss_pred HHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhccHH--HHHHHHHHHHH
Confidence 98887777888876553 456888999999998753 5566777899999999999988543 33447777777
Q ss_pred hhCChhhhHHHhhccC-------cHHHHHH-HhccCChHHHHHHHHHHHHhcccCcHHHHHHHHHcCChHHHH-----HH
Q 017249 221 LSSSEEGRIAITNSDG-------GILTLVE-TVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLL-----RL 287 (375)
Q Consensus 221 l~~~~~~~~~~~~~~g-------~v~~Lv~-lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~g~v~~L~-----~l 287 (375)
+-.++.+-..+..... .+..++. +...+++.+-+..+++-..|+.+. ..+.++.+ .+|..+ .-
T Consensus 166 IL~dd~GL~yiC~t~eRf~av~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsdnp--rar~aL~~--~LP~~Lrd~~f~~ 241 (262)
T PF04078_consen 166 ILLDDVGLNYICQTAERFFAVAMVLNKMVEQLVKQPSPRLLKHIIRCYLRLSDNP--RAREALRQ--CLPDQLRDGTFSN 241 (262)
T ss_dssp HHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHTTST--THHHHHHH--HS-GGGTSSTTTT
T ss_pred HHcchhHHHHHhcCHHHHHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHccCH--HHHHHHHH--hCcHHHhcHHHHH
Confidence 7666655554443222 2333332 335678899999999999999886 55776653 222222 22
Q ss_pred hhhCCHHHHHHHHHHHHHhh
Q 017249 288 TVEGTFEAQERARTLLDLLR 307 (375)
Q Consensus 288 l~~~~~~~~~~A~~~L~~l~ 307 (375)
+-.+|+.+++--..++.++.
T Consensus 242 ~l~~D~~~k~~l~qLl~nl~ 261 (262)
T PF04078_consen 242 ILKDDPSTKRWLQQLLSNLN 261 (262)
T ss_dssp GGCS-HHHHHHHHHHHHHTT
T ss_pred HHhcCHHHHHHHHHHHHHhc
Confidence 22457888888777877764
No 120
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=97.33 E-value=0.097 Score=53.63 Aligned_cols=238 Identities=17% Similarity=0.161 Sum_probs=135.4
Q ss_pred HHhcCChHHHHHhhCC-----CCHHHHHHHHHHHHHhhccChhhHHHHHHcCChHHHHHhhc----CCC----hHHHHHH
Q 017249 64 FAAAGVVQPLVLMLVS-----PNLDAIESSLLALLNLAVRNERNKVKIATAGAIPPLVELLK----FQN----GTLRELA 130 (375)
Q Consensus 64 ~~~~g~v~~Lv~~L~~-----~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~----~~~----~~~~~~a 130 (375)
+.+.||+..++.++.+ ...+.....+..|..+++ -+.+|..+++.|+++.|+..+. .+. +.+-+..
T Consensus 113 ~~~~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~K-v~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~L 191 (802)
T PF13764_consen 113 LAECGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCK-VKVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQL 191 (802)
T ss_pred hhcCCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHh-hHHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHH
Confidence 3456899999998865 235667777888888887 6899999999999999999884 323 5555555
Q ss_pred HHHHHHhhccCCC------hhHHH-------hcCChHHHHHHhccC----CHHHHHHHHHHHHHhccCCC-CchhhhhcC
Q 017249 131 AAAILTLSAAAPN------KPAIA-------ASGAAPLLVQILHSG----SVQGRVDAVTALHYLSTCKE-NSSPILDAT 192 (375)
Q Consensus 131 ~~~L~~Ls~~~~~------~~~i~-------~~~~l~~L~~lL~~~----~~~~~~~a~~~L~~L~~~~~-~~~~i~~~g 192 (375)
+.++-.|...... ..... ....+..|++.+.++ ++.+....+++|-+|+.+++ ....+++
T Consensus 192 L~IiE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv~-- 269 (802)
T PF13764_consen 192 LEIIESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDALVE-- 269 (802)
T ss_pred HHHHHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHHHH--
Confidence 5555544332111 01000 112367777777655 57889999999999997754 3344433
Q ss_pred CcHHHHHHhhh---cccchHHHHHHHHHHHHhhC----C---hhhhHHHhhccCcHHHHHHHhccCChH--------H--
Q 017249 193 AVPPLINLLKD---CKKYSKFAEKATALLEILSS----S---EEGRIAITNSDGGILTLVETVEDGSLV--------S-- 252 (375)
Q Consensus 193 ~i~~Lv~ll~~---~~~~~~~~~~a~~~L~~l~~----~---~~~~~~~~~~~g~v~~Lv~lL~~~~~~--------~-- 252 (375)
.+.+.+++=.- .+.+..+ -+..++.++. + ..-+..++ +.|++...+.+|...-|. .
T Consensus 270 ~F~p~l~f~~~D~~~~~~~~~---~Le~F~~i~~~I~~~~~G~~LK~~Il-~~GIv~~a~~YL~~~~P~~~~~~s~eWk~ 345 (802)
T PF13764_consen 270 HFKPYLDFDKFDEEHSPDEQF---KLECFCEIAEGIPNNSNGNRLKDKIL-ESGIVQDAIDYLLKHFPSLKNTDSPEWKE 345 (802)
T ss_pred HHHHhcChhhcccccCchHHH---HHHHHHHHHhcCCCCCchHHHHHHHH-HhhHHHHHHHHHHHhCcccccCCCHHHHH
Confidence 22222221110 1111111 2444444442 2 24456666 789999999998543222 2
Q ss_pred ------HHHHHHHHHHhcccCcHHHHHHHHHcCChHHHHHHhhh-CCHHHHHHHHHHHHHhhcCC
Q 017249 253 ------TQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVE-GTFEAQERARTLLDLLRDTP 310 (375)
Q Consensus 253 ------~~~a~~~L~~l~~~~~~~~~~~l~~~g~v~~L~~ll~~-~~~~~~~~A~~~L~~l~~~~ 310 (375)
-..++..|.-||.++.+ .+.++..++++.+-.+=.. .+..+=.-|-.+|..+.+++
T Consensus 346 ~l~~psLp~iL~lL~GLa~gh~~--tQ~~~~~~~l~~lH~LEqvss~~~IGslAEnlLeal~~~~ 408 (802)
T PF13764_consen 346 FLSRPSLPYILRLLRGLARGHEP--TQLLIAEQLLPLLHRLEQVSSEEHIGSLAENLLEALAENE 408 (802)
T ss_pred HhcCCcHHHHHHHHHHHHhcCHH--HHHHHHhhHHHHHHHhhcCCCccchHHHHHHHHHHHhcCh
Confidence 22456666666665522 2333445555333322221 23445555555666666544
No 121
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=97.31 E-value=0.0057 Score=49.37 Aligned_cols=123 Identities=18% Similarity=0.144 Sum_probs=95.2
Q ss_pred hhhhhcCCcHHHHHHhhhccc----chHHHHHHHHHHHHhhCChhhhHHHhhccCcHHHHHHHhccC--ChHHHHHHHHH
Q 017249 186 SPILDATAVPPLINLLKDCKK----YSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDG--SLVSTQHAVGA 259 (375)
Q Consensus 186 ~~i~~~g~i~~Lv~ll~~~~~----~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~--~~~~~~~a~~~ 259 (375)
..+.+.+|+..|++++.++.. ...+...++.++..|..+.-..=..+ +..++..++.++... +..+...|+.+
T Consensus 5 ~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsWd~l-~~~FI~Kia~~Vn~~~~d~~i~q~sLaI 83 (160)
T PF11841_consen 5 QEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSWDTL-SDSFIKKIASYVNSSAMDASILQRSLAI 83 (160)
T ss_pred HHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCchhhc-cHHHHHHHHHHHccccccchHHHHHHHH
Confidence 346778999999999998864 23556677888888877654333455 467889999998753 47899999999
Q ss_pred HHHhcccCcHHHHHHHHHcCChHHHHHHhhhCCHHHHHHHHHHHHHhhcCC
Q 017249 260 LLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDTP 310 (375)
Q Consensus 260 L~~l~~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~~~~~A~~~L~~l~~~~ 310 (375)
|-+++.++ +.....+.+.=-++.|+..++..++++|.+|..++..|-...
T Consensus 84 LEs~Vl~S-~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA 133 (160)
T PF11841_consen 84 LESIVLNS-PKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLKA 133 (160)
T ss_pred HHHHHhCC-HHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcC
Confidence 99999987 455566666678899999999999999999999887765444
No 122
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.27 E-value=0.051 Score=53.44 Aligned_cols=305 Identities=14% Similarity=0.151 Sum_probs=180.0
Q ss_pred HHHHhcCCC--HHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhccChhh-HHHH
Q 017249 30 LSDKLINGD--LETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIESSLLALLNLAVRNERN-KVKI 106 (375)
Q Consensus 30 Lv~~L~s~~--~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~~~~~~~~~a~~~L~~L~~~~~~~-r~~i 106 (375)
+-++|.|++ .-++..|+-+|..+.+.. |+.. ..-+....++.+|.+.+-.+...+...+.-|++.+++. +-++
T Consensus 151 I~KlLvS~~~~~~vkqkaALclL~L~r~s-pDl~---~~~~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p~~yk~~~ 226 (938)
T KOG1077|consen 151 IPKLLVSGSSMDYVKQKAALCLLRLFRKS-PDLV---NPGEWAQRIVHLLDDQHMGVVTAATSLIEALVKKNPESYKTCL 226 (938)
T ss_pred hHHHHhCCcchHHHHHHHHHHHHHHHhcC-cccc---ChhhHHHHHHHHhCccccceeeehHHHHHHHHHcCCHHHhhhH
Confidence 335565443 457788888888888776 3321 12256788999999988888888888888888765543 3222
Q ss_pred HHcCChHHHHHhhc-------------CCChHHHHHHHHHHHHhhccCCChhHHHhcCChHHHHHHhccC--CHH-----
Q 017249 107 ATAGAIPPLVELLK-------------FQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHSG--SVQ----- 166 (375)
Q Consensus 107 ~~~g~i~~Lv~lL~-------------~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~l~~L~~lL~~~--~~~----- 166 (375)
.. ++..|..... -+.|=++...+.+|.++-..++.-....--.+++.++.-.+.+ +..
T Consensus 227 ~~--avs~L~riv~~~~t~~qdYTyy~vP~PWL~vKl~rlLq~~p~~~D~~~r~~l~evl~~iLnk~~~~~~~k~vq~~n 304 (938)
T KOG1077|consen 227 PL--AVSRLSRIVVVVGTSLQDYTYYFVPAPWLQVKLLRLLQIYPTPEDPSTRARLNEVLERILNKAQEPPKSKKVQHSN 304 (938)
T ss_pred HH--HHHHHHHHHhhcccchhhceeecCCChHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHhccccCccccchHhhh
Confidence 21 1222222221 1345567777777777633322211111112233333333311 111
Q ss_pred HHHHHHHHHHHhccC-CCCchhhhhcCCcHHHHHHhhhcccchHHHHHHHHHHHHhhCChhhhHHHhhccCcHHHHHHHh
Q 017249 167 GRVDAVTALHYLSTC-KENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETV 245 (375)
Q Consensus 167 ~~~~a~~~L~~L~~~-~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~Lv~lL 245 (375)
.+...+.-..+|+.. ++....+.. .+..|-+++.+.. ..++-.++..++.|+.+......+- .+ .+.++..|
T Consensus 305 a~naVLFeaI~l~~h~D~e~~ll~~--~~~~Lg~fls~rE--~NiRYLaLEsm~~L~ss~~s~davK-~h--~d~Ii~sL 377 (938)
T KOG1077|consen 305 AKNAVLFEAISLAIHLDSEPELLSR--AVNQLGQFLSHRE--TNIRYLALESMCKLASSEFSIDAVK-KH--QDTIINSL 377 (938)
T ss_pred hHHHHHHHHHHHHHHcCCcHHHHHH--HHHHHHHHhhccc--ccchhhhHHHHHHHHhccchHHHHH-HH--HHHHHHHh
Confidence 122222223344433 333333322 5566777777652 3566778888888888765555544 22 77888889
Q ss_pred c-cCChHHHHHHHHHHHHhcccCcHHHHHHHHHcCChHHHHHHhhhCCHHHHHHHHHHHHHhhcCC----hh--------
Q 017249 246 E-DGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDTP----QE-------- 312 (375)
Q Consensus 246 ~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~~~~~A~~~L~~l~~~~----~~-------- 312 (375)
+ ..+..++..|+..|..+|..++. +. +|.-|++++.+.++.+|+.-+.=.+-|++.- .+
T Consensus 378 kterDvSirrravDLLY~mcD~~Na---k~-----IV~elLqYL~tAd~sireeivlKvAILaEKyAtDy~WyVdviLqL 449 (938)
T KOG1077|consen 378 KTERDVSIRRRAVDLLYAMCDVSNA---KQ-----IVAELLQYLETADYSIREEIVLKVAILAEKYATDYSWYVDVILQL 449 (938)
T ss_pred ccccchHHHHHHHHHHHHHhchhhH---HH-----HHHHHHHHHhhcchHHHHHHHHHHHHHHHHhcCCcchhHHHHHHH
Confidence 8 67788999999999999987632 22 4567888888899999988776555565433 11
Q ss_pred -----hhhhhhhHHHHHHHHhhcCCChHHHHHHHHHHH-HHHHHHHHHHhHHH
Q 017249 313 -----KRLSSSVLEKIVYDIAARVDGADKAAETAKRLL-QDMVQRSMELSMTR 359 (375)
Q Consensus 313 -----~~~~~g~~~~l~~~l~~~~~g~~~~~~~a~~~l-~~l~~~s~~~~~~~ 359 (375)
..+..++|..++... .+. +..++-|++-+ ..|-+-..+.+|..
T Consensus 450 iriagd~vsdeVW~RvvQiV---vNn-edlq~yaak~~fe~Lq~~a~hE~mVK 498 (938)
T KOG1077|consen 450 IRIAGDYVSDEVWYRVVQIV---VNN-EDLQGYAAKRLFEYLQKPACHENMVK 498 (938)
T ss_pred HHHhcccccHHHHHHhheeE---ecc-hhhhHHHHHHHHHHHhhhHHHHHHHH
Confidence 344566888887654 344 67776666544 44445567777765
No 123
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=97.25 E-value=0.036 Score=50.68 Aligned_cols=193 Identities=19% Similarity=0.199 Sum_probs=119.5
Q ss_pred HHHHhhcCCChHHHHHHHHHHHHhhccCCChhHHH--hcCChHHHHHHhccCCHHHHHHHHHHHHHhccC---CCCchhh
Q 017249 114 PLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIA--ASGAAPLLVQILHSGSVQGRVDAVTALHYLSTC---KENSSPI 188 (375)
Q Consensus 114 ~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~--~~~~l~~L~~lL~~~~~~~~~~a~~~L~~L~~~---~~~~~~i 188 (375)
..+..+.......|+.++..+.++....-....+. ....++.+.+.++.+..+-+..|+.++.-++.. .+....+
T Consensus 47 ~~Id~l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~ei 126 (309)
T PF05004_consen 47 EAIDLLTEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSEEI 126 (309)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHHHH
Confidence 34444555668889999998888776544333332 234677888888888876677777777766643 2344444
Q ss_pred hhcCCcHHHHHHhhhcccchHHHHHHHHHHHHhhC----ChhhhHHHhhccCcHHHHHH--Hhcc----------CChHH
Q 017249 189 LDATAVPPLINLLKDCKKYSKFAEKATALLEILSS----SEEGRIAITNSDGGILTLVE--TVED----------GSLVS 252 (375)
Q Consensus 189 ~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~----~~~~~~~~~~~~g~v~~Lv~--lL~~----------~~~~~ 252 (375)
.+ ...|.|.+++.+++....++..|+.+|+-++. .++.....+ ..+..++. +++. +++.+
T Consensus 127 ~~-~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~---~~le~if~~~~~~~~~~~~~~~~~~~~~l 202 (309)
T PF05004_consen 127 FE-ELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELM---ESLESIFLLSILKSDGNAPVVAAEDDAAL 202 (309)
T ss_pred HH-HHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHH---HHHHHHHHHHhcCcCCCcccccCCCccHH
Confidence 44 47888888888776555565566666665442 122222111 12332221 1221 12457
Q ss_pred HHHHHHHHHHhcccCcHHHHHHHHHcCChHHHHHHhhhCCHHHHHHHHHHHHHhhcCCh
Q 017249 253 TQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDTPQ 311 (375)
Q Consensus 253 ~~~a~~~L~~l~~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~ 311 (375)
...|+....-|...-++...... -...++.|..++.+.+..+|..|-.+|..|.+..+
T Consensus 203 ~~aAL~aW~lLlt~~~~~~~~~~-~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~~~ 260 (309)
T PF05004_consen 203 VAAALSAWALLLTTLPDSKLEDL-LEEALPALSELLDSDDVDVRIAAGEAIALLYELAR 260 (309)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHH-HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhh
Confidence 77777777766655432112221 24568999999999999999999999998866553
No 124
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=97.23 E-value=0.015 Score=60.28 Aligned_cols=268 Identities=16% Similarity=0.119 Sum_probs=164.4
Q ss_pred HHHHHHHhc-CCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhc---cChhh
Q 017249 27 IEELSDKLI-NGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIESSLLALLNLAV---RNERN 102 (375)
Q Consensus 27 l~~Lv~~L~-s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~~~~~~~~~a~~~L~~L~~---~~~~~ 102 (375)
++.+...++ -...+.|..|+..|..++..-+++.+- .-++|.++-++.++..+||..|+.+|..+-. +-+..
T Consensus 424 vs~lts~IR~lk~~~tK~~ALeLl~~lS~~i~de~~L----DRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~ 499 (1431)
T KOG1240|consen 424 VSVLTSCIRALKTIQTKLAALELLQELSTYIDDEVKL----DRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPS 499 (1431)
T ss_pred HHHHHHHHHhhhcchhHHHHHHHHHHHhhhcchHHHH----hhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcc
Confidence 444445554 245788999999999999876333322 2468999999999999999999999888653 23344
Q ss_pred HHHHHHcCChHHHHHhhcCC-ChHHHHHHHHHHHHhhc------------------cCCCh-hHH----------HhcCC
Q 017249 103 KVKIATAGAIPPLVELLKFQ-NGTLRELAAAAILTLSA------------------AAPNK-PAI----------AASGA 152 (375)
Q Consensus 103 r~~i~~~g~i~~Lv~lL~~~-~~~~~~~a~~~L~~Ls~------------------~~~~~-~~i----------~~~~~ 152 (375)
-..+.-.-.+|.|-.++.+. ...+|..-+.+|..|+. ++++- ... ...++
T Consensus 500 daniF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~rFle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~~~V 579 (1431)
T KOG1240|consen 500 DANIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAYRFLELTQELRQAGMLNDPNSETAPEQNYNTELQALHHTV 579 (1431)
T ss_pred cchhhHhhhhhhhHhhhccCccceehhhHHhhHHHHHHHHHHHHHHHHHHHhcccccCcccccccccccchHHHHHHHHH
Confidence 45566666788888888773 34445444444544431 11111 000 01112
Q ss_pred hHHHHHHhccCCHHHHHHHHHHHHHhccC--CCCchhhhhcCCcHHHHHHhhhcccchHHHHHHHHHHHHhhCChhhhHH
Q 017249 153 APLLVQILHSGSVQGRVDAVTALHYLSTC--KENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIA 230 (375)
Q Consensus 153 l~~L~~lL~~~~~~~~~~a~~~L~~L~~~--~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~~~~~~~~ 230 (375)
-+....+|.++.+-++...+..|.-||.. .+- .+.=.++.|+..|.+. +..++.+-..-|..+|..-..|.
T Consensus 580 ~~~v~sLlsd~~~~Vkr~Lle~i~~LC~FFGk~k----sND~iLshLiTfLNDk--Dw~LR~aFfdsI~gvsi~VG~rs- 652 (1431)
T KOG1240|consen 580 EQMVSSLLSDSPPIVKRALLESIIPLCVFFGKEK----SNDVILSHLITFLNDK--DWRLRGAFFDSIVGVSIFVGWRS- 652 (1431)
T ss_pred HHHHHHHHcCCchHHHHHHHHHHHHHHHHhhhcc----cccchHHHHHHHhcCc--cHHHHHHHHhhccceEEEEeeee-
Confidence 22344456666677777777777777742 110 0122567788888775 33444222222222222222221
Q ss_pred HhhccCcHHHHHHHhccCChHHHHHHHHHHHHhcccCcHHHHHHHHHcCChHHHHHHhhhCCHHHHHHHHHHHHHhhcCC
Q 017249 231 ITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDTP 310 (375)
Q Consensus 231 ~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~~~~~A~~~L~~l~~~~ 310 (375)
+ +...+|.|.+-|.++.+.+...|+++|..|+..+. .++..=..+++...-++-.++.=+|..++.++....+.-
T Consensus 653 -~-seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~l---l~K~~v~~i~~~v~PlL~hPN~WIR~~~~~iI~~~~~~l 727 (1431)
T KOG1240|consen 653 -V-SEYLLPLLQQGLTDGEEAVIVSALGSLSILIKLGL---LRKPAVKDILQDVLPLLCHPNLWIRRAVLGIIAAIARQL 727 (1431)
T ss_pred -H-HHHHHHHHHHhccCcchhhHHHHHHHHHHHHHhcc---cchHHHHHHHHhhhhheeCchHHHHHHHHHHHHHHHhhh
Confidence 2 45778888899999999999999999999987652 112222334445555666788899999999887776543
No 125
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=97.23 E-value=0.00074 Score=44.49 Aligned_cols=55 Identities=24% Similarity=0.166 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHhhccChhhHHHHHHcCChHHHHHhhcCCChHHHHHHHHHHHHh
Q 017249 82 LDAIESSLLALLNLAVRNERNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTL 137 (375)
Q Consensus 82 ~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L 137 (375)
+.+|..|+++|++++...++.- .-+...+++.|+.+|+++++.+|..|+++|.+|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~-~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELL-QPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHH-HHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHH-HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 4689999999999887544333 335567899999999999999999999999875
No 126
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=97.22 E-value=0.00063 Score=44.81 Aligned_cols=55 Identities=22% Similarity=0.163 Sum_probs=44.8
Q ss_pred hHHHHHHHHHHHHhcccCcHHHHHHHHHcCChHHHHHHhhhCCHHHHHHHHHHHHHh
Q 017249 250 LVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLL 306 (375)
Q Consensus 250 ~~~~~~a~~~L~~l~~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~~~~~A~~~L~~l 306 (375)
+.+|..|+++|.+++....+. ... ....+++.|..++.++++.||..|+++|.+|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~-~~~-~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPEL-LQP-YLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHH-HHH-HHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHH-HHH-HHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 357899999999988776332 222 4578999999999999999999999999865
No 127
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function. It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).
Probab=97.20 E-value=0.0024 Score=53.84 Aligned_cols=125 Identities=18% Similarity=0.177 Sum_probs=89.7
Q ss_pred cCCHHHHHHHHHHHHHhccCCCCchhhhhc----------------CCcHHHHHHhhhc-----ccchHHHHHHHHHHHH
Q 017249 162 SGSVQGRVDAVTALHYLSTCKENSSPILDA----------------TAVPPLINLLKDC-----KKYSKFAEKATALLEI 220 (375)
Q Consensus 162 ~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~----------------g~i~~Lv~ll~~~-----~~~~~~~~~a~~~L~~ 220 (375)
.++......++.+|.||+..++.+..+.+. ..+..|+..+..+ +.. .-......++.|
T Consensus 6 ~~~~~~adl~~MLLsNlT~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~-~~~~yla~vl~N 84 (192)
T PF04063_consen 6 DPKSPLADLACMLLSNLTRSDSGCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKK-DNYDYLASVLAN 84 (192)
T ss_pred CCCcchHHHHHHHHHHhccchHHHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCC-cchhHHHHHHHH
Confidence 344455667888999999887766655432 2567788777661 222 234678899999
Q ss_pred hhCChhhhHHHhhcc-Cc--HHHHHHHhccCChHHHHHHHHHHHHhcccCcHHHHHHHHH---cCChHHHHHHhh
Q 017249 221 LSSSEEGRIAITNSD-GG--ILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILK---EGAIPGLLRLTV 289 (375)
Q Consensus 221 l~~~~~~~~~~~~~~-g~--v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~---~g~v~~L~~ll~ 289 (375)
++..+++|+.++... +. +..|+.++.+.+...|..++++|.|+|... +....+.. .+++|.|+--+.
T Consensus 85 lS~~~~gR~~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrNccFd~--~~H~~LL~~~~~~iLp~LLlPLa 157 (192)
T PF04063_consen 85 LSQLPEGRQFFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRNCCFDT--DSHEWLLSDDEVDILPYLLLPLA 157 (192)
T ss_pred hcCCHHHHHHHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHHHhhccH--hHHHHhcCchhhhhHHHHHhhcc
Confidence 999999999999533 23 678888888888888999999999999987 33455554 356676666554
No 128
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=97.19 E-value=0.012 Score=56.83 Aligned_cols=147 Identities=18% Similarity=0.148 Sum_probs=96.1
Q ss_pred hHHHHHhhCCCCHHHHHHHHHHHHHhhccChh--hHHHHHHcCChHHHHHhhcCCChHHHHHHHHHHHHhhccCC---Ch
Q 017249 70 VQPLVLMLVSPNLDAIESSLLALLNLAVRNER--NKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAP---NK 144 (375)
Q Consensus 70 v~~Lv~~L~~~~~~~~~~a~~~L~~L~~~~~~--~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~---~~ 144 (375)
+..++..|+++.+.+++.|+...+.|+.--.. .-..+...|. .|.+-|....+++.-..+.++..+..... -+
T Consensus 606 vStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~--iLyE~lge~ypEvLgsil~Ai~~I~sv~~~~~mq 683 (975)
T COG5181 606 VSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLGN--ILYENLGEDYPEVLGSILKAICSIYSVHRFRSMQ 683 (975)
T ss_pred HHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhH--HHHHhcCcccHHHHHHHHHHHHHHhhhhcccccC
Confidence 44567788999999999999988888741100 0122333332 35666677788887777777776654322 23
Q ss_pred hHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCCCCchhhhh-cCCcHHHHHHhhhcccchHHHHHHHHHHHHhh
Q 017249 145 PAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTCKENSSPILD-ATAVPPLINLLKDCKKYSKFAEKATALLEILS 222 (375)
Q Consensus 145 ~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~-~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~ 222 (375)
+.+ .|.+|.|..+|++....++.+....+..++...+...-..+ -..--.|+++|.+. ...++.+|...++.++
T Consensus 684 pPi--~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfeLvd~Lks~--nKeiRR~A~~tfG~Is 758 (975)
T COG5181 684 PPI--SGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMRICFELVDSLKSW--NKEIRRNATETFGCIS 758 (975)
T ss_pred Cch--hhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHh--hHHHHHhhhhhhhhHH
Confidence 333 58899999999999999999999999999865322111111 11233466666665 3467888888887765
No 129
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=97.17 E-value=0.053 Score=54.75 Aligned_cols=228 Identities=14% Similarity=0.079 Sum_probs=156.6
Q ss_pred CCCCHHHHHHHHHHHHHhhccChhhHHHHHHcCChHHHHHhhc-CCChHHHHHHHHHHHHhhccCCChhHHHhcCChHHH
Q 017249 78 VSPNLDAIESSLLALLNLAVRNERNKVKIATAGAIPPLVELLK-FQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLL 156 (375)
Q Consensus 78 ~~~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~-~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~l~~L 156 (375)
.+..+...-.+.+++...+...+.+...+.. .+...+..+. +..+.++..|+.+++..+....... ..++.++.|
T Consensus 460 ~~e~P~Ll~Ra~~~i~~fs~~~~~~~~~~~~--fl~~~v~~l~~~~~~~~ki~a~~~~~~~~~~~vl~~--~~p~ild~L 535 (1005)
T KOG2274|consen 460 YQESPFLLLRAFLTISKFSSSTVINPQLLQH--FLNATVNALTMDVPPPVKISAVRAFCGYCKVKVLLS--LQPMILDGL 535 (1005)
T ss_pred cccCHHHHHHHHHHHHHHHhhhccchhHHHH--HHHHHHHhhccCCCCchhHHHHHHHHhccCceeccc--cchHHHHHH
Confidence 3445666668888888776643333332221 2233444443 3356677777777777662111111 235678888
Q ss_pred HHHhccCCHHHHHHHHHHHHHhccCCCCchhhhhcCCcHHHHHHhhhcccchHHHHHHHHHHHHhhCChhhhHHHhhccC
Q 017249 157 VQILHSGSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSDG 236 (375)
Q Consensus 157 ~~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g 236 (375)
.++....+.++......+|+..+..+.-.....++...|..+.++...++++.+...+-.++..++....+..-+. ..
T Consensus 536 ~qlas~~s~evl~llmE~Ls~vv~~dpef~as~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~~~~~g~m~--e~ 613 (1005)
T KOG2274|consen 536 LQLASKSSDEVLVLLMEALSSVVKLDPEFAASMESKICPLTINLFLKYSEDPQVASLAQDLFEELLQIAANYGPMQ--ER 613 (1005)
T ss_pred HHHcccccHHHHHHHHHHHHHHhccChhhhhhhhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhcchH--HH
Confidence 8888878888888888999988877766666677788899998888777777888888888888887666665555 36
Q ss_pred cHHHHHHHhccCC----hHHHHHHHHHHHHhcccCcHHHHHHHHHcCChHHHHH-HhhhCCHHHHHHHHHHHHHhhcCCh
Q 017249 237 GILTLVETVEDGS----LVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLR-LTVEGTFEAQERARTLLDLLRDTPQ 311 (375)
Q Consensus 237 ~v~~Lv~lL~~~~----~~~~~~a~~~L~~l~~~~~~~~~~~l~~~g~v~~L~~-ll~~~~~~~~~~A~~~L~~l~~~~~ 311 (375)
.+|.+++.|..+. .....-|+.+|..+..+.++..-+.++ .-+.|++.+ .+++++..+-..+..+|+.+-...+
T Consensus 614 ~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~-~~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is~~~ 692 (1005)
T KOG2274|consen 614 LIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLI-CYAFPAVAKITLHSDDHETLQNATECLRALISVTL 692 (1005)
T ss_pred HHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHH-HHHhHHhHhheeecCChHHHHhHHHHHHHHHhcCH
Confidence 8999999997554 667778888888777776544333333 345666766 5778899999999999999887763
Q ss_pred h
Q 017249 312 E 312 (375)
Q Consensus 312 ~ 312 (375)
+
T Consensus 693 e 693 (1005)
T KOG2274|consen 693 E 693 (1005)
T ss_pred H
Confidence 3
No 130
>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]
Probab=97.10 E-value=0.014 Score=55.62 Aligned_cols=166 Identities=16% Similarity=0.107 Sum_probs=121.2
Q ss_pred hHHHHHhhcCCChHHHHHHHHHHHHhhccCCChhHHHhcCChHHHHHHhccCC----HHHHHHHHHHHHHhccCCCCchh
Q 017249 112 IPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHSGS----VQGRVDAVTALHYLSTCKENSSP 187 (375)
Q Consensus 112 i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~l~~L~~lL~~~~----~~~~~~a~~~L~~L~~~~~~~~~ 187 (375)
...+++++.+++...+..++..|..++.+......+....++..|..++.+++ .++....+.++..|-...-....
T Consensus 85 a~~i~e~l~~~~~~~~~~a~k~l~sls~d~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgvvsW~ 164 (713)
T KOG2999|consen 85 AKRIMEILTEGNNISKMEALKELDSLSLDPTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGVVSWE 164 (713)
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhceeeee
Confidence 34678888888888888899999999888777777788889999999998875 35677777777777654333333
Q ss_pred hhhcCCcHHHHHHhhhcccchHHHHHHHHHHHHhhCChhhhHHHhhccCcHHHHHHHhccCChHHHHHHHHHHHHhcccC
Q 017249 188 ILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSC 267 (375)
Q Consensus 188 i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~ 267 (375)
.+...++.....+..-...+..+...|+.+|.++..+.....+.+.++-.+..|+.++...+..++.+|...|-.+....
T Consensus 165 ~~~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq~~n~~i~~~aial~nal~~~a 244 (713)
T KOG2999|consen 165 SVSNDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQVSNQRIQTCAIALLNALFRKA 244 (713)
T ss_pred ecccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHHhcchHHHHHHHHHHHHHHhhC
Confidence 34444555555555433334456788999999998877665666657788999999999999999999888888776665
Q ss_pred cHHHHHHHHH
Q 017249 268 RDKYRQLILK 277 (375)
Q Consensus 268 ~~~~~~~l~~ 277 (375)
.++-+..+.+
T Consensus 245 ~~~~R~~~~~ 254 (713)
T KOG2999|consen 245 PDDKRFEMAK 254 (713)
T ss_pred ChHHHHHHHH
Confidence 4444544544
No 131
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=97.05 E-value=0.13 Score=50.24 Aligned_cols=132 Identities=22% Similarity=0.236 Sum_probs=91.0
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhccChhhHHH
Q 017249 26 LIEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIESSLLALLNLAVRNERNKVK 105 (375)
Q Consensus 26 ~l~~Lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~~~~~~~~~a~~~L~~L~~~~~~~r~~ 105 (375)
....++..-+ ++...+.-|+..|..+...- |+..+. ++..++.+..+++..+|..|++.|-.+|.++++.-..
T Consensus 24 ~y~~il~~~k-g~~k~K~Laaq~I~kffk~F-P~l~~~-----Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~k 96 (556)
T PF05918_consen 24 DYKEILDGVK-GSPKEKRLAAQFIPKFFKHF-PDLQEE-----AINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVSK 96 (556)
T ss_dssp HHHHHHHGGG-S-HHHHHHHHHHHHHHHCC--GGGHHH-----HHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HHH
T ss_pred HHHHHHHHcc-CCHHHHHHHHHHHHHHHhhC-hhhHHH-----HHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHhH
Confidence 4455555554 57889999999999999877 666654 4789999999999999999999999999988877777
Q ss_pred HHHcCChHHHHHhhcCCChHHHHHHHHHHHHhhccCCChhHHHhcCChHHHHHHhc---cCCHHHHHHHHHHHH
Q 017249 106 IATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILH---SGSVQGRVDAVTALH 176 (375)
Q Consensus 106 i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~l~~L~~lL~---~~~~~~~~~a~~~L~ 176 (375)
++. .|+++|.+.++.-...+-.+|..|...++ .+.+..|...+. +++..+++.++..|.
T Consensus 97 vaD-----vL~QlL~tdd~~E~~~v~~sL~~ll~~d~-------k~tL~~lf~~i~~~~~~de~~Re~~lkFl~ 158 (556)
T PF05918_consen 97 VAD-----VLVQLLQTDDPVELDAVKNSLMSLLKQDP-------KGTLTGLFSQIESSKSGDEQVRERALKFLR 158 (556)
T ss_dssp HHH-----HHHHHTT---HHHHHHHHHHHHHHHHH-H-------HHHHHHHHHHHH---HS-HHHHHHHHHHHH
T ss_pred HHH-----HHHHHHhcccHHHHHHHHHHHHHHHhcCc-------HHHHHHHHHHHHhcccCchHHHHHHHHHHH
Confidence 754 89999998887666666667766644322 355666666665 567778888887765
No 132
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=96.99 E-value=0.045 Score=55.17 Aligned_cols=141 Identities=19% Similarity=0.156 Sum_probs=101.6
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhccChhhHHH
Q 017249 26 LIEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIESSLLALLNLAVRNERNKVK 105 (375)
Q Consensus 26 ~l~~Lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~~~~~~~~~a~~~L~~L~~~~~~~r~~ 105 (375)
.++.+++...+.|.+.|+-.=-.+...+... |+ .-.+ .+..+.+=++++++.+|-.|++++..+=. ++.-..
T Consensus 56 Lf~dViK~~~trd~ElKrL~ylYl~~yak~~-P~-~~lL----avNti~kDl~d~N~~iR~~AlR~ls~l~~--~el~~~ 127 (757)
T COG5096 56 LFPDVIKNVATRDVELKRLLYLYLERYAKLK-PE-LALL----AVNTIQKDLQDPNEEIRGFALRTLSLLRV--KELLGN 127 (757)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHhccC-HH-HHHH----HHHHHHhhccCCCHHHHHHHHHHHHhcCh--HHHHHH
Confidence 3455555555556666665555666666655 21 1111 36667777888999999999999987643 223322
Q ss_pred HHHcCChHHHHHhhcCCChHHHHHHHHHHHHhhccCCChhHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccC
Q 017249 106 IATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTC 181 (375)
Q Consensus 106 i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~~L~~~ 181 (375)
.++++.+++.++++.+|..|+-++.++-.-+ +....+.|.+..+..++.+.++.+..+|+.+|..+-..
T Consensus 128 -----~~~~ik~~l~d~~ayVRk~Aalav~kly~ld--~~l~~~~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 128 -----IIDPIKKLLTDPHAYVRKTAALAVAKLYRLD--KDLYHELGLIDILKELVADSDPIVIANALASLAEIDPE 196 (757)
T ss_pred -----HHHHHHHHccCCcHHHHHHHHHHHHHHHhcC--HhhhhcccHHHHHHHHhhCCCchHHHHHHHHHHHhchh
Confidence 4679999999999999999999999986543 34445678888899999999999999999999887543
No 133
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=96.97 E-value=0.4 Score=46.45 Aligned_cols=339 Identities=12% Similarity=0.052 Sum_probs=186.4
Q ss_pred hHhHHHHHHHH----hcCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcc
Q 017249 23 KQALIEELSDK----LINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIESSLLALLNLAVR 98 (375)
Q Consensus 23 ~~~~l~~Lv~~----L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~~~~~~~~~a~~~L~~L~~~ 98 (375)
....+.+...+ ++++++.-+..|+.++.....+..+.++..++ ...+|.+..+..++..-++..++|+++.++..
T Consensus 360 gd~i~~pVl~FvEqni~~~~w~nreaavmAfGSvm~gp~~~~lT~~V-~qalp~i~n~m~D~~l~vk~ttAwc~g~iad~ 438 (858)
T COG5215 360 GDKIMRPVLGFVEQNIRSESWANREAAVMAFGSVMHGPCEDCLTKIV-PQALPGIENEMSDSCLWVKSTTAWCFGAIADH 438 (858)
T ss_pred hhHhHHHHHHHHHHhccCchhhhHHHHHHHhhhhhcCccHHHHHhhH-HhhhHHHHHhcccceeehhhHHHHHHHHHHHH
Confidence 33445555544 45889999999999999999888344444444 56788888888888888899999999999863
Q ss_pred ChhhHHHHHHcCChHHHHHhhcC---CChHHHHHHHHHHHHhhccCCC----hhHHHhcCChHHHHHHhc------cCCH
Q 017249 99 NERNKVKIATAGAIPPLVELLKF---QNGTLRELAAAAILTLSAAAPN----KPAIAASGAAPLLVQILH------SGSV 165 (375)
Q Consensus 99 ~~~~r~~i~~~g~i~~Lv~lL~~---~~~~~~~~a~~~L~~Ls~~~~~----~~~i~~~~~l~~L~~lL~------~~~~ 165 (375)
....+-..|-++..++.+-- ..|....++.|..-||..+-.. .+.+. ....+.++.-|- .++.
T Consensus 439 ---va~~i~p~~Hl~~~vsa~liGl~D~p~~~~ncsw~~~nlv~h~a~a~~~~~S~l-~~fY~ai~~~Lv~~t~~~~Ne~ 514 (858)
T COG5215 439 ---VAMIISPCGHLVLEVSASLIGLMDCPFRSINCSWRKENLVDHIAKAVREVESFL-AKFYLAILNALVKGTELALNES 514 (858)
T ss_pred ---HHHhcCccccccHHHHHHHhhhhccchHHhhhHHHHHhHHHhhhhhhccccchh-HHHHHHHHHHHHHHHHhhccch
Confidence 22222234555555554322 2566677888888888755221 11111 122222222221 2233
Q ss_pred HHHHHHHHHHHHhccC-CCCchhhhh----------cCCcHHHHHHhhhcc--cchHHHHHHHHHHHHhhC-ChhhhHHH
Q 017249 166 QGRVDAVTALHYLSTC-KENSSPILD----------ATAVPPLINLLKDCK--KYSKFAEKATALLEILSS-SEEGRIAI 231 (375)
Q Consensus 166 ~~~~~a~~~L~~L~~~-~~~~~~i~~----------~g~i~~Lv~ll~~~~--~~~~~~~~a~~~L~~l~~-~~~~~~~~ 231 (375)
..+..+..+|..|... ++....+.. ...+..+-+.+...+ ....++-+-+.+|..+.. .+...+..
T Consensus 515 n~R~s~fsaLgtli~~~~d~V~~~~a~~~~~~~~kl~~~isv~~q~l~~eD~~~~~elqSN~~~vl~aiir~~~~~ie~v 594 (858)
T COG5215 515 NLRVSLFSALGTLILICPDAVSDILAGFYDYTSKKLDECISVLGQILATEDQLLVEELQSNYIGVLEAIIRTRRRDIEDV 594 (858)
T ss_pred hHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCcccH
Confidence 4566666666655422 222221110 011222222222111 011233334444443332 22211111
Q ss_pred hhccCcHHHHHHHhccCC-hHHHHHHHHHHHHhcccCcHHHHHHHHHcCChHHHHHHhhhCCHHHHHHHHHHHHHhhcCC
Q 017249 232 TNSDGGILTLVETVEDGS-LVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDTP 310 (375)
Q Consensus 232 ~~~~g~v~~Lv~lL~~~~-~~~~~~a~~~L~~l~~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~~~~~A~~~L~~l~~~~ 310 (375)
. .-....++++|.+.+ ..+-.....++.+++..- +-+-+..-..++|-|.+.+...+..+.-.|+.++.-+++.-
T Consensus 595 ~--D~lm~Lf~r~les~~~t~~~~dV~~aIsal~~sl--~e~Fe~y~~~fiPyl~~aln~~d~~v~~~avglvgdlantl 670 (858)
T COG5215 595 E--DQLMELFIRILESTKPTTAFGDVYTAISALSTSL--EERFEQYASKFIPYLTRALNCTDRFVLNSAVGLVGDLANTL 670 (858)
T ss_pred H--HHHHHHHHHHHhccCCchhhhHHHHHHHHHHHHH--HHHHHHHHhhhhHHHHHHhcchhHHHHHHHHHHHHHHHHHh
Confidence 1 124445566676653 444556677777776643 11333445789999999888888889999999999988765
Q ss_pred hh--hhhhhhhHHHHHHHHhhcCCChHHHHHHHHHHHHHH-------HHHHHHHhHHHHHHHhhhcCCCC
Q 017249 311 QE--KRLSSSVLEKIVYDIAARVDGADKAAETAKRLLQDM-------VQRSMELSMTRIQQRAASSAPSK 371 (375)
Q Consensus 311 ~~--~~~~~g~~~~l~~~l~~~~~g~~~~~~~a~~~l~~l-------~~~s~~~~~~~~~~~~~~~~~~~ 371 (375)
.. ..........|+..|.++... +..|.........+ .+-=++.=|.=+.|-.+...|++
T Consensus 671 ~~df~~y~d~~ms~LvQ~lss~~~~-R~lKPaiLSvFgDIAlaiga~F~~YL~~im~L~qqas~~~p~~~ 739 (858)
T COG5215 671 GTDFNIYADVLMSSLVQCLSSEATH-RDLKPAILSVFGDIALAIGANFESYLDMIMMLFQQASELDPHSD 739 (858)
T ss_pred hhhHHHHHHHHHHHHHHHhcChhhc-cccchHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccCCCCC
Confidence 43 334455777777777643322 44444333333322 22234555556666666665554
No 134
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.96 E-value=0.12 Score=53.96 Aligned_cols=227 Identities=12% Similarity=0.088 Sum_probs=135.4
Q ss_pred CCCCHHHHHHHHHHHHHhhccChhhHHHHHH--cCChHHHHHhhcCCChHHHHHHHHHHHHhhccCCChhHHHhcCChHH
Q 017249 78 VSPNLDAIESSLLALLNLAVRNERNKVKIAT--AGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPL 155 (375)
Q Consensus 78 ~~~~~~~~~~a~~~L~~L~~~~~~~r~~i~~--~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~l~~ 155 (375)
++.+..+|..+.+.|..++.. +........ ......|.+-+++.+...+...+.+|..|....+.-........|+-
T Consensus 664 ~~~~~~vQkK~yrlL~~l~~~-~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i~k~I~E 742 (1176)
T KOG1248|consen 664 NSSSTKVQKKAYRLLEELSSS-PSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLIPKLIPE 742 (1176)
T ss_pred ccccHHHHHHHHHHHHHHhcC-CchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 344688999999999999975 333322222 12344555555666677788888888887655442111112233444
Q ss_pred HHHHhccCCHHHHHHHHHHHHHhcc--C---CCCchhhhhcCCcHHHHHHhhhcccchHHHHHHHH--HHHHhhCC-hhh
Q 017249 156 LVQILHSGSVQGRVDAVTALHYLST--C---KENSSPILDATAVPPLINLLKDCKKYSKFAEKATA--LLEILSSS-EEG 227 (375)
Q Consensus 156 L~~lL~~~~~~~~~~a~~~L~~L~~--~---~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~--~L~~l~~~-~~~ 227 (375)
++-.++..+...++.+..+|..++. . +.+-. ....+...+.++..+-..+.....+.. ++..+... ...
T Consensus 743 vIL~~Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~---~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~e~~~~ 819 (1176)
T KOG1248|consen 743 VILSLKEVNVKARRNAFALLVFIGAIQSSLDDGNEP---ASAILNEFLSIISAGLVGDSTRVVASDIVAITHILQEFKNI 819 (1176)
T ss_pred HHHhcccccHHHHhhHHHHHHHHHHHHhhhcccccc---hHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHhcc
Confidence 4434477788889999999998873 1 11111 111444555555544111122222222 22222221 111
Q ss_pred hHHHhhccCcHHHHHHHhccCChHHHHHHHHHHHHhcccCcHHHHHHHHHcCChHHHHHHhhhCCHHHHHHHHHHHHHhh
Q 017249 228 RIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLR 307 (375)
Q Consensus 228 ~~~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~~~~~A~~~L~~l~ 307 (375)
-.... -.+.+..+..+|.+.++.++..|++.+..++..-+ +..-.-....+++.+..+.++....++.+.-.+|..|.
T Consensus 820 ld~~~-l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~p-e~~l~~~~~~LL~sll~ls~d~k~~~r~Kvr~LlekLi 897 (1176)
T KOG1248|consen 820 LDDET-LEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFP-EECLSPHLEELLPSLLALSHDHKIKVRKKVRLLLEKLI 897 (1176)
T ss_pred ccHHH-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCC-HHHHhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 11111 13455666677788999999999999999988763 32222223458899999999989999999999999887
Q ss_pred cCC
Q 017249 308 DTP 310 (375)
Q Consensus 308 ~~~ 310 (375)
+..
T Consensus 898 rkf 900 (1176)
T KOG1248|consen 898 RKF 900 (1176)
T ss_pred HHh
Confidence 655
No 135
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=96.89 E-value=0.0029 Score=48.38 Aligned_cols=71 Identities=17% Similarity=0.217 Sum_probs=61.4
Q ss_pred ChHHHHHhh-CCCCHHHHHHHHHHHHHhhccChhhHHHHHHcCChHHHHHhhcCCChHHHHHHHHHHHHhhc
Q 017249 69 VVQPLVLML-VSPNLDAIESSLLALLNLAVRNERNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSA 139 (375)
Q Consensus 69 ~v~~Lv~~L-~~~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~ 139 (375)
.+..|+++| .+.++.+..-|+.-|+.++...|..|..+-+.|+-..+++++.+++++++..|+.++..+..
T Consensus 44 llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~ 115 (119)
T PF11698_consen 44 LLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLMV 115 (119)
T ss_dssp HHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 588999999 45578888899999999999999888888889999999999999999999999999887643
No 136
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.87 E-value=0.026 Score=56.22 Aligned_cols=238 Identities=15% Similarity=0.073 Sum_probs=152.1
Q ss_pred hhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHH-HhhccChhhHHHHHHcCChHHHHHhhcCCChH-HHHHHHHHHHH
Q 017249 59 KTRSEFAAAGVVQPLVLMLVSPNLDAIESSLLALL-NLAVRNERNKVKIATAGAIPPLVELLKFQNGT-LRELAAAAILT 136 (375)
Q Consensus 59 ~~~~~~~~~g~v~~Lv~~L~~~~~~~~~~a~~~L~-~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~-~~~~a~~~L~~ 136 (375)
.-+...++.|+...|+.+..-+.+..+....++|. .+.... .+ ...+++++...+.+.... -...++.++.|
T Consensus 495 ~~~~~~Ik~~~~~aLlrl~~~q~e~akl~~~~aL~~~i~f~~--~~----~~~v~~~~~s~~~~d~~~~en~E~L~altn 568 (748)
T KOG4151|consen 495 YERAKKIKPGGYEALLRLGQQQFEEAKLKWYHALAGKIDFPG--ER----SYEVVKPLDSALHNDEKGLENFEALEALTN 568 (748)
T ss_pred HhcCccccccHHHHHHHHHHHhchHHHHHHHHHHhhhcCCCC--Cc----hhhhhhhhcchhhhhHHHHHHHHHHHHhhc
Confidence 45556778899999999988777777777788777 333211 11 123455555555333211 13467788999
Q ss_pred hhccCC-ChhHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCCCC-chhhhh-cCCcHHHHHHhhhcccchHHHHH
Q 017249 137 LSAAAP-NKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTCKEN-SSPILD-ATAVPPLINLLKDCKKYSKFAEK 213 (375)
Q Consensus 137 Ls~~~~-~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~~L~~~~~~-~~~i~~-~g~i~~Lv~ll~~~~~~~~~~~~ 213 (375)
|+..++ .+..+....+++.+-..+...++..+..++.++.||..++.. ...+++ ....+.....+... ......+
T Consensus 569 Las~s~s~r~~i~ke~~~~~ie~~~~ee~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~~e~~--~E~~~lA 646 (748)
T KOG4151|consen 569 LASISESDRQKILKEKALGKIEELMTEENPALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNLNLEVA--DEKFELA 646 (748)
T ss_pred ccCcchhhHHHHHHHhcchhhHHHhhcccHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHHHHHhh--hhHHhhh
Confidence 987755 566677777777777788888999999999999999987643 444555 33444444444332 3344455
Q ss_pred HHHHHHHhhC-ChhhhHHHhhccCcHHHHHHHhccCChHHHHHHHHHHHHhcccCcHHHHHHHHHcCChHHHHHHhhhCC
Q 017249 214 ATALLEILSS-SEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGT 292 (375)
Q Consensus 214 a~~~L~~l~~-~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~g~v~~L~~ll~~~~ 292 (375)
+.+++..+.. ....+..+.....+...++.++.++++.++...+.++.|+.... .+....++....++.+...-...-
T Consensus 647 ~a~a~a~I~sv~~n~c~~~~~~~~~~e~~~~~i~~~~~~~qhrgl~~~ln~~~~~-~ei~~~~~~~~~~~~l~~~~~~~~ 725 (748)
T KOG4151|consen 647 GAGALAAITSVVENHCSRILELLEWLEILVRAIQDEDDEIQHRGLVIILNLFEAL-FEIAEKIFETEVMELLSGLQKLNR 725 (748)
T ss_pred ccccccchhhcchhhhhhHHHhhcchHHHHHhhcCchhhhhhhhhhhhhhHHHHH-HHHHHHhccchHHHHHHHHHHhhh
Confidence 5555554443 33333323334567888899999999999999999999966554 466666666677776666444333
Q ss_pred HHHHHHHHHHHHH
Q 017249 293 FEAQERARTLLDL 305 (375)
Q Consensus 293 ~~~~~~A~~~L~~ 305 (375)
.-.++.+..+|..
T Consensus 726 a~~~~~~~~~l~~ 738 (748)
T KOG4151|consen 726 APKREDAAPCLSA 738 (748)
T ss_pred hhhhhhhhhHHHH
Confidence 4444555444443
No 137
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=96.87 E-value=0.16 Score=51.80 Aligned_cols=305 Identities=14% Similarity=0.075 Sum_probs=171.6
Q ss_pred HhcCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhc--CChHHHHHhhCCC--CHHHHHHHHHHHHHhhccChhhHHHHHH
Q 017249 33 KLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAA--GVVQPLVLMLVSP--NLDAIESSLLALLNLAVRNERNKVKIAT 108 (375)
Q Consensus 33 ~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~--g~v~~Lv~~L~~~--~~~~~~~a~~~L~~L~~~~~~~r~~i~~ 108 (375)
.+++.+...+..+...|..+...- + ..+.++ ..+|.+..-|.+. ....+..++..|.++-..++.-.-.=..
T Consensus 443 qlr~ks~kt~~~cf~lL~eli~~l-p---~~l~~~~~slvpgI~~~l~DkSsss~~ki~~L~fl~~~L~s~~p~~fhp~~ 518 (1233)
T KOG1824|consen 443 QLREKSVKTRQGCFLLLTELINVL-P---GALAQHIPSLVPGIIYSLNDKSSSSNLKIDALVFLYSALISHPPEVFHPHL 518 (1233)
T ss_pred HHhhccccchhhHHHHHHHHHHhC-c---chhhhcccccchhhhhhcCCccchHHHHHHHHHHHHHHHhcCChhhcccch
Confidence 344444446666777777776554 2 223332 3566777777554 3566777777777655433322111111
Q ss_pred cCChHHHHHhhcCCChHHHHHHHHHHHHhhccCCC--hhH-HHh----cCChHHHHHHhccC--CHHHHHHHHHHHHHhc
Q 017249 109 AGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPN--KPA-IAA----SGAAPLLVQILHSG--SVQGRVDAVTALHYLS 179 (375)
Q Consensus 109 ~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~--~~~-i~~----~~~l~~L~~lL~~~--~~~~~~~a~~~L~~L~ 179 (375)
.-..++++.....+-..+-..|+.+...+...-.. ... +.. ...+...++.|... +.++++.|..++..+.
T Consensus 519 ~~Ls~~v~~aV~d~fyKisaEAL~v~~~lvkvirpl~~~~~~d~~~~v~~m~~~tl~rL~a~d~DqeVkeraIscmgq~i 598 (1233)
T KOG1824|consen 519 SALSPPVVAAVGDPFYKISAEALLVCQQLVKVIRPLQPPSSFDASPYVKTMYDCTLQRLKATDSDQEVKERAISCMGQII 598 (1233)
T ss_pred hhhhhHHHHHhcCchHhhhHHHHHHHHHHHHHhcccCCCccCCCChhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHH
Confidence 23355566666666666766777666666533111 100 111 12233444555544 6789999998887664
Q ss_pred cCCCCchhhhhcCCcHHHHHHhhhcccchHHHHHHHHHHHHhhCChhhhHHHhhccCcHHHHHHHhccCChHHHHHHHHH
Q 017249 180 TCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGA 259 (375)
Q Consensus 180 ~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~ 259 (375)
..-......--...++.+++-+.+. .++..|.++++.++.++-.....-.-..+++.|.++++......+...+.+
T Consensus 599 ~~fgD~l~~eL~~~L~il~eRl~nE----iTRl~AvkAlt~Ia~S~l~i~l~~~l~~il~~l~~flrK~~r~lr~~~l~a 674 (1233)
T KOG1824|consen 599 ANFGDFLGNELPRTLPILLERLGNE----ITRLTAVKALTLIAMSPLDIDLSPVLTEILPELASFLRKNQRALRLATLTA 674 (1233)
T ss_pred HHHhhhhhhhhHHHHHHHHHHHhch----hHHHHHHHHHHHHHhccceeehhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3211111100122444444444433 466778999998887765443211124678888888887666677766666
Q ss_pred HHHhcccCcHHHHHHHHHcCChHHHHHHhhhCCHHHHHHHHHHHHHhhcCChhhh--hhhhhHHHHHHHHhhcCCChHHH
Q 017249 260 LLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDTPQEKR--LSSSVLEKIVYDIAARVDGADKA 337 (375)
Q Consensus 260 L~~l~~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~~~~--~~~g~~~~l~~~l~~~~~g~~~~ 337 (375)
+-.+..+-.......+. .-++..+..++...+-++.+.|+.+|..+....+... +..-+++.++..+.+ |-.
T Consensus 675 ~~~L~~~~~~~~~~~~~-e~vL~el~~Lisesdlhvt~~a~~~L~tl~~~~ps~l~~~~~~iL~~ii~ll~S-----pll 748 (1233)
T KOG1824|consen 675 LDKLVKNYSDSIPAELL-EAVLVELPPLISESDLHVTQLAVAFLTTLAIIQPSSLLKISNPILDEIIRLLRS-----PLL 748 (1233)
T ss_pred HHHHHHHHhccccHHHH-HHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhcccHHHHHHhhhhHHHHHHHhhC-----ccc
Confidence 66554432111111111 2244555567777889999999999999988886633 334477888777753 444
Q ss_pred HHHHHHHHHHHHHH
Q 017249 338 AETAKRLLQDMVQR 351 (375)
Q Consensus 338 ~~~a~~~l~~l~~~ 351 (375)
+..|-..+.++++.
T Consensus 749 qg~al~~~l~~f~a 762 (1233)
T KOG1824|consen 749 QGGALSALLLFFQA 762 (1233)
T ss_pred cchHHHHHHHHHHH
Confidence 55666666666554
No 138
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.84 E-value=0.055 Score=51.13 Aligned_cols=237 Identities=15% Similarity=0.015 Sum_probs=125.6
Q ss_pred cCChHHHHH----hhCCCCHHHHHHHHHHHHHhhccChhhHHHHHHcCChHHHHHhhc-CCChHHHHHHHHHHHHhhccC
Q 017249 67 AGVVQPLVL----MLVSPNLDAIESSLLALLNLAVRNERNKVKIATAGAIPPLVELLK-FQNGTLRELAAAAILTLSAAA 141 (375)
Q Consensus 67 ~g~v~~Lv~----~L~~~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~-~~~~~~~~~a~~~L~~Ls~~~ 141 (375)
.|.+..++. -..+++..++..|++.|.+.+.+.|.-...... -.+..++.-|. ..+.+++-.+..+|..+...-
T Consensus 253 ~~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~-~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~ 331 (533)
T KOG2032|consen 253 TGLLGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKT-TQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKA 331 (533)
T ss_pred cccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHH-HHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhh
Confidence 455554444 345677889999999999999874443333222 23445555444 447888889999888876654
Q ss_pred CChhHHH-hcCChHHHHHHhccCCHHHHHHHHHHHHHhccC--CCCchhhhh---cCCcHHHHHHhhhcccchHHHHHHH
Q 017249 142 PNKPAIA-ASGAAPLLVQILHSGSVQGRVDAVTALHYLSTC--KENSSPILD---ATAVPPLINLLKDCKKYSKFAEKAT 215 (375)
Q Consensus 142 ~~~~~i~-~~~~l~~L~~lL~~~~~~~~~~a~~~L~~L~~~--~~~~~~i~~---~g~i~~Lv~ll~~~~~~~~~~~~a~ 215 (375)
.+..... -..+.-.+..+.++.+++.+..+..++..|+.. .+.+..+.+ .+..+.+ --+.+.+ +.+ ..|+
T Consensus 332 ~~~~l~~~~l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~ll-lhl~d~~--p~v-a~AC 407 (533)
T KOG2032|consen 332 SNDDLESYLLNIALRLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLL-LHLQDPN--PYV-ARAC 407 (533)
T ss_pred hhcchhhhchhHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccce-eeeCCCC--hHH-HHHH
Confidence 4333221 123344677788899999999998888887743 233333332 2333333 3334432 222 2355
Q ss_pred HHHHHhhCChhhhHHHhh-----------------c------cCcHHHHHHHh--------ccCChHHHHHHHHHHHHhc
Q 017249 216 ALLEILSSSEEGRIAITN-----------------S------DGGILTLVETV--------EDGSLVSTQHAVGALLSLC 264 (375)
Q Consensus 216 ~~L~~l~~~~~~~~~~~~-----------------~------~g~v~~Lv~lL--------~~~~~~~~~~a~~~L~~l~ 264 (375)
+.....|.-.-.++.... . ....+.+..++ ...-+.+++.+...-.++.
T Consensus 408 r~~~~~c~p~l~rke~~~~~q~~ld~~~~~~q~Fyn~~c~~L~~i~~d~l~~~~t~~~~~f~sswe~vr~aavl~t~~~v 487 (533)
T KOG2032|consen 408 RSELRTCYPNLVRKELYHLFQESLDTDMARFQAFYNQWCIQLNHIHPDILMLLLTEDQHIFSSSWEQVREAAVLKTTRSV 487 (533)
T ss_pred HHHHHhcCchhHHHHHHHHHhhhhHHhHHHHHHHHHHHHHHHhhhCHHHHHHHHHhchhheecchHHHHHHHHHHHHHHH
Confidence 554444433322222210 0 00111111111 1112344444444444444
Q ss_pred ccCcHHHHHHHHHcCChHHHHHHhhhCCHHHHHHHHHHHHHhhc
Q 017249 265 QSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRD 308 (375)
Q Consensus 265 ~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~~~~~A~~~L~~l~~ 308 (375)
.+..++.+....-.-....|-.+..+.-|+++..|..+|..+..
T Consensus 488 d~l~~~~c~~~d~~qL~~~ls~l~~dp~pev~~~a~~al~~l~~ 531 (533)
T KOG2032|consen 488 DSLVRAACSSADGLQLRSSLSTLWRDPRPEVTDSARKALDLLSV 531 (533)
T ss_pred HHhHHHHHHHhhHHHHHHHHHHHccCCCchhHHHHHHHhhhHhh
Confidence 33322222222222344555666677788888888888876653
No 139
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=96.77 E-value=0.33 Score=42.45 Aligned_cols=197 Identities=19% Similarity=0.179 Sum_probs=117.2
Q ss_pred hHHHHHhhCCCCHHHHHHHHHHHHHhhccChhhHHHHHHcCChHHHHHhhcCC--ChHHHHHHHHHHHHhhccCCChhHH
Q 017249 70 VQPLVLMLVSPNLDAIESSLLALLNLAVRNERNKVKIATAGAIPPLVELLKFQ--NGTLRELAAAAILTLSAAAPNKPAI 147 (375)
Q Consensus 70 v~~Lv~~L~~~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~--~~~~~~~a~~~L~~Ls~~~~~~~~i 147 (375)
+..+.+...+++.......+.+|+.... ...++.|+..|... .|-+|..|..+|.++.
T Consensus 38 i~~i~ka~~d~s~llkhe~ay~LgQ~~~-----------~~Av~~l~~vl~desq~pmvRhEAaealga~~--------- 97 (289)
T KOG0567|consen 38 IKAITKAFIDDSALLKHELAYVLGQMQD-----------EDAVPVLVEVLLDESQEPMVRHEAAEALGAIG--------- 97 (289)
T ss_pred HHHHHHhcccchhhhccchhhhhhhhcc-----------chhhHHHHHHhcccccchHHHHHHHHHHHhhc---------
Confidence 4555555555555555666667766554 34688999988654 5777889999998874
Q ss_pred HhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCCCC-----chhhh--------hcCCcHHHHHHhhhcccchHHHHHH
Q 017249 148 AASGAAPLLVQILHSGSVQGRVDAVTALHYLSTCKEN-----SSPIL--------DATAVPPLINLLKDCKKYSKFAEKA 214 (375)
Q Consensus 148 ~~~~~l~~L~~lL~~~~~~~~~~a~~~L~~L~~~~~~-----~~~i~--------~~g~i~~Lv~ll~~~~~~~~~~~~a 214 (375)
....++.+-+..+++-..+...+..++..+-..+.. ..... ..+-+..+-..+.+.+.+.--+..+
T Consensus 98 -~~~~~~~l~k~~~dp~~~v~ETc~lAi~rle~~~~~~~~~~~~p~~SvdPa~p~~~ssv~~lr~~lld~t~~l~~Ry~a 176 (289)
T KOG0567|consen 98 -DPESLEILTKYIKDPCKEVRETCELAIKRLEWKDIIDKIANSSPYISVDPAPPANLSSVHELRAELLDETKPLFERYRA 176 (289)
T ss_pred -chhhHHHHHHHhcCCccccchHHHHHHHHHHHhhccccccccCccccCCCCCccccccHHHHHHHHHhcchhHHHHHhh
Confidence 345567777777666677777777777776532111 11111 1112333333333322221112223
Q ss_pred HHHHHHhhCChhhhHHHhhccCcHHHHHHHhccCChHHHHHHHHHHHHhcccCcHHHHHHHHHcCChHHHHHHhhh--CC
Q 017249 215 TALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVE--GT 292 (375)
Q Consensus 215 ~~~L~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~g~v~~L~~ll~~--~~ 292 (375)
...|+|+- ....|..|+.-+..++...|..+..+++.|-+ .-.++.|.+.+.+ .+
T Consensus 177 mF~LRn~g-----------~EeaI~al~~~l~~~SalfrhEvAfVfGQl~s------------~~ai~~L~k~L~d~~E~ 233 (289)
T KOG0567|consen 177 MFYLRNIG-----------TEEAINALIDGLADDSALFRHEVAFVFGQLQS------------PAAIPSLIKVLLDETEH 233 (289)
T ss_pred hhHhhccC-----------cHHHHHHHHHhcccchHHHHHHHHHHHhhccc------------hhhhHHHHHHHHhhhcc
Confidence 33333221 12345666666767788888888888876632 3356777776653 46
Q ss_pred HHHHHHHHHHHHHhhcCC
Q 017249 293 FEAQERARTLLDLLRDTP 310 (375)
Q Consensus 293 ~~~~~~A~~~L~~l~~~~ 310 (375)
|.+|..|+.+|..++...
T Consensus 234 pMVRhEaAeALGaIa~e~ 251 (289)
T KOG0567|consen 234 PMVRHEAAEALGAIADED 251 (289)
T ss_pred hHHHHHHHHHHHhhcCHH
Confidence 889999999998887655
No 140
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=96.77 E-value=0.13 Score=47.35 Aligned_cols=210 Identities=12% Similarity=0.050 Sum_probs=145.1
Q ss_pred HHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhccChhhHH-----HHHH--cCChHHHHHhhcCCChHHHHHHHHHHHH
Q 017249 64 FAAAGVVQPLVLMLVSPNLDAIESSLLALLNLAVRNERNKV-----KIAT--AGAIPPLVELLKFQNGTLRELAAAAILT 136 (375)
Q Consensus 64 ~~~~g~v~~Lv~~L~~~~~~~~~~a~~~L~~L~~~~~~~r~-----~i~~--~g~i~~Lv~lL~~~~~~~~~~a~~~L~~ 136 (375)
+...+.+..|+..|..-+.+.+..+.....++.......+. .+.. ...+..|+.--+ ++++--.+-..|+.
T Consensus 72 i~~~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~--~~dial~~g~mlRe 149 (335)
T PF08569_consen 72 IYRSDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYE--NPDIALNCGDMLRE 149 (335)
T ss_dssp HHHHTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGG--STTTHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhc--CccccchHHHHHHH
Confidence 44568899999999998999999999999998876544432 2322 223333333333 45555566677888
Q ss_pred hhccCCChhHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhc-cCCCCchhhhhc---CCcHHHHHHhhhcccchHHHH
Q 017249 137 LSAAAPNKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLS-TCKENSSPILDA---TAVPPLINLLKDCKKYSKFAE 212 (375)
Q Consensus 137 Ls~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~~L~-~~~~~~~~i~~~---g~i~~Lv~ll~~~~~~~~~~~ 212 (375)
...++.....+.....+..+.+.+..++-++...|..++..|- .+.......... ..+.....++.+++. .++.
T Consensus 150 c~k~e~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NY--vtkr 227 (335)
T PF08569_consen 150 CIKHESLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNY--VTKR 227 (335)
T ss_dssp HTTSHHHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSH--HHHH
T ss_pred HHhhHHHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCe--Eeeh
Confidence 8777666666677778888999999999999999999999854 444444444432 466677788887753 5778
Q ss_pred HHHHHHHHhhCChhhhHHHhh---ccCcHHHHHHHhccCChHHHHHHHHHHHHhcccCc--HHHHHHHHH
Q 017249 213 KATALLEILSSSEEGRIAITN---SDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCR--DKYRQLILK 277 (375)
Q Consensus 213 ~a~~~L~~l~~~~~~~~~~~~---~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~--~~~~~~l~~ 277 (375)
.++..|+.+-.++.+...+.. +..-+..++.+|++.+..+|-.|..++--+..+.+ +.....+..
T Consensus 228 qslkLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVANp~K~~~I~~iL~~ 297 (335)
T PF08569_consen 228 QSLKLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVANPNKPPPIVDILIK 297 (335)
T ss_dssp HHHHHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-SS-BHHHHHHHHH
T ss_pred hhHHHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhCCCCChHHHHHHHH
Confidence 899999999988887665443 44567788899999999999999999998887653 233444443
No 141
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=96.73 E-value=0.82 Score=46.46 Aligned_cols=168 Identities=15% Similarity=0.093 Sum_probs=122.6
Q ss_pred hcCCCHHHHHHHHH-HHHHHHhhCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhccChhhHHHHHHcCCh
Q 017249 34 LINGDLETKIEAAR-DIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIESSLLALLNLAVRNERNKVKIATAGAI 112 (375)
Q Consensus 34 L~s~~~~~~~~a~~-~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i 112 (375)
+.+.+...|+.|++ +|+.+..++ .... ..+.+++...+.+.++++-.-.-|...+...|+.... ++
T Consensus 28 l~s~n~~~kidAmK~iIa~M~~G~--dmss------Lf~dViK~~~trd~ElKrL~ylYl~~yak~~P~~~lL-----av 94 (757)
T COG5096 28 LESSNDYKKIDAMKKIIAQMSLGE--DMSS------LFPDVIKNVATRDVELKRLLYLYLERYAKLKPELALL-----AV 94 (757)
T ss_pred ccccChHHHHHHHHHHHHHHhcCC--ChHH------HHHHHHHHHHhcCHHHHHHHHHHHHHHhccCHHHHHH-----HH
Confidence 66777888999987 556666666 3222 2566777777889999998888888888866622222 25
Q ss_pred HHHHHhhcCCChHHHHHHHHHHHHhhccCCChhHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCCCCchhhhhcC
Q 017249 113 PPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTCKENSSPILDAT 192 (375)
Q Consensus 113 ~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g 192 (375)
..+..=+.++++.+|..|++++..+=. .-.....++++.+++.++++.++..|+-++.++=..+ .....+.|
T Consensus 95 Nti~kDl~d~N~~iR~~AlR~ls~l~~------~el~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld--~~l~~~~g 166 (757)
T COG5096 95 NTIQKDLQDPNEEIRGFALRTLSLLRV------KELLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRLD--KDLYHELG 166 (757)
T ss_pred HHHHhhccCCCHHHHHHHHHHHHhcCh------HHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhcC--Hhhhhccc
Confidence 577788899999999999998888722 1223467899999999999999999999999886432 23334567
Q ss_pred CcHHHHHHhhhcccchHHHHHHHHHHHHhhCC
Q 017249 193 AVPPLINLLKDCKKYSKFAEKATALLEILSSS 224 (375)
Q Consensus 193 ~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~~ 224 (375)
.+..+..++.+. ++.+..+|+..|..+...
T Consensus 167 ~~~~l~~l~~D~--dP~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 167 LIDILKELVADS--DPIVIANALASLAEIDPE 196 (757)
T ss_pred HHHHHHHHhhCC--CchHHHHHHHHHHHhchh
Confidence 778888888776 456778888888766543
No 142
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=96.70 E-value=0.74 Score=47.84 Aligned_cols=254 Identities=18% Similarity=0.154 Sum_probs=149.5
Q ss_pred HHHhhHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCCCC-HHHHHHHHHHHHHhhc
Q 017249 19 WNQRKQALIEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPN-LDAIESSLLALLNLAV 97 (375)
Q Consensus 19 ~~~~~~~~l~~Lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~~~-~~~~~~a~~~L~~L~~ 97 (375)
....-.+.+..|++.|++.|..++..|++.+..++...+.+-.+. ++...++++.... ...-..++-+|+.|+.
T Consensus 335 v~eivE~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp~~Lad~-----vi~svid~~~p~e~~~aWHgacLaLAELA~ 409 (1133)
T KOG1943|consen 335 VPEIVEFVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLPPELADQ-----VIGSVIDLFNPAEDDSAWHGACLALAELAL 409 (1133)
T ss_pred cHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHccCcHHHHHH-----HHHHHHHhcCcCCchhHHHHHHHHHHHHHh
Confidence 334445677888888889999999999999999999883333332 3555555554433 4555688889999987
Q ss_pred cChhhHHHHHHcCChHHHHHhhcC--------CChHHHHHHHHHHHHhhccCCCh--hHHHhcCChHHHHHHhccCCHHH
Q 017249 98 RNERNKVKIATAGAIPPLVELLKF--------QNGTLRELAAAAILTLSAAAPNK--PAIAASGAAPLLVQILHSGSVQG 167 (375)
Q Consensus 98 ~~~~~r~~i~~~g~i~~Lv~lL~~--------~~~~~~~~a~~~L~~Ls~~~~~~--~~i~~~~~l~~L~~lL~~~~~~~ 167 (375)
..--.-..+ ..++|.++.-|.- ....+|..|+.++|.++..-+.. ..+...=.-..|...+.+++...
T Consensus 410 rGlLlps~l--~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFDrevnc 487 (1133)
T KOG1943|consen 410 RGLLLPSLL--EDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALFDREVNC 487 (1133)
T ss_pred cCCcchHHH--HHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcCchhhH
Confidence 422111111 2345556555521 23568999999999998653321 11222122223444566777888
Q ss_pred HHHHHHHHHHhccCCCCchhhhhcCCcHHHHHHhhhcccch-HHHHHHHHHHH-HhhCChhhhHHHhhccCcHHHHHHH-
Q 017249 168 RVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDCKKYS-KFAEKATALLE-ILSSSEEGRIAITNSDGGILTLVET- 244 (375)
Q Consensus 168 ~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~-~~~~~a~~~L~-~l~~~~~~~~~~~~~~g~v~~Lv~l- 244 (375)
++.|..++........|... |+ .++..-+... ..+.+|-..++ .++.. .|....+++.
T Consensus 488 RRAAsAAlqE~VGR~~n~p~-----Gi----~Lis~~dy~sV~~rsNcy~~l~~~ia~~----------~~y~~~~f~~L 548 (1133)
T KOG1943|consen 488 RRAASAALQENVGRQGNFPH-----GI----SLISTIDYFSVTNRSNCYLDLCVSIAEF----------SGYREPVFNHL 548 (1133)
T ss_pred hHHHHHHHHHHhccCCCCCC-----ch----hhhhhcchhhhhhhhhHHHHHhHHHHhh----------hhHHHHHHHHH
Confidence 99999998876544332211 11 2222211110 11122222222 12222 2333333333
Q ss_pred ----hccCChHHHHHHHHHHHHhcccCcHHHHHHHHHcCChHHHHHHhhhCCHHHHHHHHHHH
Q 017249 245 ----VEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLL 303 (375)
Q Consensus 245 ----L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~~~~~A~~~L 303 (375)
+.+-+..+++.+.++|..|+... + +....+.+++|+....+++...+.-...+.
T Consensus 549 ~t~Kv~HWd~~irelaa~aL~~Ls~~~-p----k~~a~~~L~~lld~~ls~~~~~r~g~~la~ 606 (1133)
T KOG1943|consen 549 LTKKVCHWDVKIRELAAYALHKLSLTE-P----KYLADYVLPPLLDSTLSKDASMRHGVFLAA 606 (1133)
T ss_pred HhcccccccHHHHHHHHHHHHHHHHhh-H----HhhcccchhhhhhhhcCCChHHhhhhHHHH
Confidence 45678999999999999987654 2 345678889999988888887776544433
No 143
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=96.69 E-value=0.019 Score=42.64 Aligned_cols=90 Identities=14% Similarity=0.077 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhccChhhHHHHHH--cCChHHHHHhh
Q 017249 42 KIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIESSLLALLNLAVRNERNKVKIAT--AGAIPPLVELL 119 (375)
Q Consensus 42 ~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~~~~~~~~~a~~~L~~L~~~~~~~r~~i~~--~g~i~~Lv~lL 119 (375)
+.-++..|...+..- ...... .-...+++++..+.+++.++|..|+.+|.++++. .+..+.. ...++.|.+++
T Consensus 3 R~ggli~Laa~ai~l-~~~~~~-~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~---~~~~~l~~f~~IF~~L~kl~ 77 (97)
T PF12755_consen 3 RKGGLIGLAAVAIAL-GKDISK-YLDEILPPVLKCFDDQDSRVRYYACEALYNISKV---ARGEILPYFNEIFDALCKLS 77 (97)
T ss_pred hhHHHHHHHHHHHHc-hHhHHH-HHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 344566666666555 222111 1125689999999999999999999999999973 3444443 67788999999
Q ss_pred cCCChHHHHHHHHHHHHh
Q 017249 120 KFQNGTLRELAAAAILTL 137 (375)
Q Consensus 120 ~~~~~~~~~~a~~~L~~L 137 (375)
...++.++..| ..|-++
T Consensus 78 ~D~d~~Vr~~a-~~Ld~l 94 (97)
T PF12755_consen 78 ADPDENVRSAA-ELLDRL 94 (97)
T ss_pred cCCchhHHHHH-HHHHHH
Confidence 99999988554 666555
No 144
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=96.68 E-value=0.044 Score=48.16 Aligned_cols=99 Identities=14% Similarity=0.108 Sum_probs=85.2
Q ss_pred HHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCC-CCHHHHHHHHHHHHHhhccChhhHHHHHHcCChHHHHHhh
Q 017249 41 TKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVS-PNLDAIESSLLALLNLAVRNERNKVKIATAGAIPPLVELL 119 (375)
Q Consensus 41 ~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~-~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL 119 (375)
....|+..|.-++--. +..+..+.+...+..++.+|+. ..+.++..++.+|..+..+++.|...+-+.+|+..++.++
T Consensus 107 li~~aL~vLQGl~LLH-p~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~ll 185 (257)
T PF08045_consen 107 LIALALRVLQGLCLLH-PPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSLL 185 (257)
T ss_pred HHHHHHHHHHHHHHcC-chHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHHH
Confidence 3556788898888877 7899999999999999999954 5789999999999999999999999999999999999999
Q ss_pred cCC--ChHHHHHHHHHHHHhhcc
Q 017249 120 KFQ--NGTLRELAAAAILTLSAA 140 (375)
Q Consensus 120 ~~~--~~~~~~~a~~~L~~Ls~~ 140 (375)
++. +.+++-.++..|.-...+
T Consensus 186 k~~~~~~~~r~K~~EFL~fyl~~ 208 (257)
T PF08045_consen 186 KSKSTDRELRLKCIEFLYFYLMP 208 (257)
T ss_pred ccccccHHHhHHHHHHHHHHHcc
Confidence 876 678888888877765543
No 145
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.68 E-value=0.16 Score=50.56 Aligned_cols=107 Identities=18% Similarity=0.103 Sum_probs=66.7
Q ss_pred CChHHHHHHhccCCHHHHHHHHHHHHHhccCCCCchhhhhcCCcHHHHHHhhhcccchHHHHHHHHHHHHhhCChhhhHH
Q 017249 151 GAAPLLVQILHSGSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIA 230 (375)
Q Consensus 151 ~~l~~L~~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~~~~~~~~ 230 (375)
..+..+..+|.+.++.++..|+.+|.+|+..+...... ...+++++...++. .++.-.+.-|..+. .....
T Consensus 243 ~~i~~i~~lL~stssaV~fEaa~tlv~lS~~p~alk~A-----a~~~i~l~~kesdn-nvklIvldrl~~l~---~~~~~ 313 (948)
T KOG1058|consen 243 RYIRCIYNLLSSTSSAVIFEAAGTLVTLSNDPTALKAA-----ASTYIDLLVKESDN-NVKLIVLDRLSELK---ALHEK 313 (948)
T ss_pred HHHHHHHHHHhcCCchhhhhhcceEEEccCCHHHHHHH-----HHHHHHHHHhccCc-chhhhhHHHHHHHh---hhhHH
Confidence 45677777888888888888888888887665443332 23455555443221 23322333333333 22233
Q ss_pred HhhccCcHHHHHHHhccCChHHHHHHHHHHHHhcccCc
Q 017249 231 ITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCR 268 (375)
Q Consensus 231 ~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~ 268 (375)
++ .|.+-.++++|.+++-.++..++....-|+...+
T Consensus 314 il--~~l~mDvLrvLss~dldvr~Ktldi~ldLvssrN 349 (948)
T KOG1058|consen 314 IL--QGLIMDVLRVLSSPDLDVRSKTLDIALDLVSSRN 349 (948)
T ss_pred HH--HHHHHHHHHHcCcccccHHHHHHHHHHhhhhhcc
Confidence 33 2677778888888888899999988888877653
No 146
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.66 E-value=0.16 Score=50.72 Aligned_cols=260 Identities=19% Similarity=0.180 Sum_probs=146.1
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhccChhh--
Q 017249 25 ALIEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIESSLLALLNLAVRNERN-- 102 (375)
Q Consensus 25 ~~l~~Lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~~~~~~~~~a~~~L~~L~~~~~~~-- 102 (375)
-.++++=+++++....+..+|++.+.++.... . +. +. ..+..|--+++++.+-+|-.|.++|..++.-.|..
T Consensus 245 ~~~~fl~s~l~~K~emV~~EaArai~~l~~~~-~--r~-l~--pavs~Lq~flssp~~~lRfaAvRtLnkvAm~~P~~v~ 318 (865)
T KOG1078|consen 245 PLFPFLESCLRHKSEMVIYEAARAIVSLPNTN-S--RE-LA--PAVSVLQLFLSSPKVALRFAAVRTLNKVAMKHPQAVT 318 (865)
T ss_pred hHHHHHHHHHhchhHHHHHHHHHHHhhccccC-H--hh-cc--hHHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCCcccc
Confidence 34455556666778888999999999887665 1 11 11 16777778889999999999999999998654321
Q ss_pred ---HH---HHHH---cCChHHHHHhhcCCChHHHHHHHHHHHHhhcc--CCChhHH-------------HhcCChHHHHH
Q 017249 103 ---KV---KIAT---AGAIPPLVELLKFQNGTLRELAAAAILTLSAA--APNKPAI-------------AASGAAPLLVQ 158 (375)
Q Consensus 103 ---r~---~i~~---~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~--~~~~~~i-------------~~~~~l~~L~~ 158 (375)
++ .+-. .-...++-.+|+.+.......-..-+.+...+ ++.+... -+.+.++.|..
T Consensus 319 ~cN~elE~lItd~NrsIat~AITtLLKTG~e~sv~rLm~qI~~fv~disDeFKivvvdai~sLc~~fp~k~~~~m~FL~~ 398 (865)
T KOG1078|consen 319 VCNLDLESLITDSNRSIATLAITTLLKTGTESSVDRLMKQISSFVSDISDEFKIVVVDAIRSLCLKFPRKHTVMMNFLSN 398 (865)
T ss_pred ccchhHHhhhcccccchhHHHHHHHHHhcchhHHHHHHHHHHHHHHhccccceEEeHHHHHHHHhhccHHHHHHHHHHHH
Confidence 10 0100 01122333333333222221111112221111 1111000 12234555566
Q ss_pred HhccC-CHHHHHHHHHHHHHhcc-CCCCchhhhhcCCcHHHHHHhhhcccchHHHHHHHHHHHHhhCC-hhhhHHHhhcc
Q 017249 159 ILHSG-SVQGRVDAVTALHYLST-CKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSS-EEGRIAITNSD 235 (375)
Q Consensus 159 lL~~~-~~~~~~~a~~~L~~L~~-~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~~ 235 (375)
+|+.. ..+.+.....++..+.. .++.+.. +...|...+.++. ....+.++|.-|-.. |.. .. ..
T Consensus 399 ~Lr~eGg~e~K~aivd~Ii~iie~~pdsKe~-----~L~~LCefIEDce----~~~i~~rILhlLG~EgP~a---~~-Ps 465 (865)
T KOG1078|consen 399 MLREEGGFEFKRAIVDAIIDIIEENPDSKER-----GLEHLCEFIEDCE----FTQIAVRILHLLGKEGPKA---PN-PS 465 (865)
T ss_pred HHHhccCchHHHHHHHHHHHHHHhCcchhhH-----HHHHHHHHHHhcc----chHHHHHHHHHHhccCCCC---CC-cc
Confidence 65543 34556666666665554 3333332 4456666666553 223355666544321 111 01 23
Q ss_pred CcHHHHHHHhccCChHHHHHHHHHHHHhcccCcHHHHHHHHHcCChHHHHHHhhhCCHHHHHHHHHHHHHhhcC
Q 017249 236 GGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDT 309 (375)
Q Consensus 236 g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~~~~~A~~~L~~l~~~ 309 (375)
..+..+...+.-.+..++..|+.+|..+...+. .....+...|.+.+.+.+..+|+.|...|..+.+.
T Consensus 466 kyir~iyNRviLEn~ivRaaAv~alaKfg~~~~------~l~~sI~vllkRc~~D~DdevRdrAtf~l~~l~~~ 533 (865)
T KOG1078|consen 466 KYIRFIYNRVILENAIVRAAAVSALAKFGAQDV------VLLPSILVLLKRCLNDSDDEVRDRATFYLKNLEEK 533 (865)
T ss_pred hhhHHHhhhhhhhhhhhHHHHHHHHHHHhcCCC------CccccHHHHHHHHhcCchHHHHHHHHHHHHHhhhh
Confidence 445555555555678889999999999985541 12344556667788899999999999999999843
No 147
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=96.61 E-value=0.077 Score=55.32 Aligned_cols=232 Identities=12% Similarity=0.038 Sum_probs=143.3
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhC---ChhhHHHHHhcCChHHHHHhhCC-CCHHHHHHHHHHHHHhhccCh
Q 017249 25 ALIEELSDKLINGDLETKIEAARDIRKVVKKS---SLKTRSEFAAAGVVQPLVLMLVS-PNLDAIESSLLALLNLAVRNE 100 (375)
Q Consensus 25 ~~l~~Lv~~L~s~~~~~~~~a~~~l~~l~~~~---~~~~~~~~~~~g~v~~Lv~~L~~-~~~~~~~~a~~~L~~L~~~~~ 100 (375)
..+|.++.++.++..++|..|+.+|..+...- ++.+...|. .-.+|.|-.++.+ ....++..-+..|..|+..-.
T Consensus 462 RVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~-eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~ 540 (1431)
T KOG1240|consen 462 RVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDANIFP-EYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAY 540 (1431)
T ss_pred hhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccchhhH-hhhhhhhHhhhccCccceehhhHHhhHHHHHHHHH
Confidence 46788999999999999999999998886432 122333222 2345666666666 334455555566666654210
Q ss_pred hhHHH----------------------------HHHcCChHHHHHhhcCCChHHHHHHHHHHHHhhccCCChhHHHhcCC
Q 017249 101 RNKVK----------------------------IATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGA 152 (375)
Q Consensus 101 ~~r~~----------------------------i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~ 152 (375)
..... -...++-..++.+|..+++.++..-+..|.-|+..-.. .. ...-.
T Consensus 541 rFle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~~~V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~FFGk-~k-sND~i 618 (1431)
T KOG1240|consen 541 RFLELTQELRQAGMLNDPNSETAPEQNYNTELQALHHTVEQMVSSLLSDSPPIVKRALLESIIPLCVFFGK-EK-SNDVI 618 (1431)
T ss_pred HHHHHHHHHHhcccccCcccccccccccchHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhhh-cc-cccch
Confidence 00000 00011122334445555556665555555555432100 00 01235
Q ss_pred hHHHHHHhccCCHHHHHHHHHHHHHhccCCCCchhhhhcCCcHHHHHHhhhcccchHHHHHHHHHHHHhhCChhhhHHHh
Q 017249 153 APLLVQILHSGSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAIT 232 (375)
Q Consensus 153 l~~L~~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~ 232 (375)
+..|+..|++.+...+..-...|..++..-. ..-++...+|.|..-|.++ .+.+...|+++|..|+...--++..+
T Consensus 619 LshLiTfLNDkDw~LR~aFfdsI~gvsi~VG--~rs~seyllPLl~Q~ltD~--EE~Viv~aL~~ls~Lik~~ll~K~~v 694 (1431)
T KOG1240|consen 619 LSHLITFLNDKDWRLRGAFFDSIVGVSIFVG--WRSVSEYLLPLLQQGLTDG--EEAVIVSALGSLSILIKLGLLRKPAV 694 (1431)
T ss_pred HHHHHHHhcCccHHHHHHHHhhccceEEEEe--eeeHHHHHHHHHHHhccCc--chhhHHHHHHHHHHHHHhcccchHHH
Confidence 6778888888877666655555554443211 1114556778888888776 34677889999999998877777766
Q ss_pred hccCcHHHHHHHhccCChHHHHHHHHHHHHhcc
Q 017249 233 NSDGGILTLVETVEDGSLVSTQHAVGALLSLCQ 265 (375)
Q Consensus 233 ~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~ 265 (375)
. ..++....+|-+++..+|..++.+|...+.
T Consensus 695 ~--~i~~~v~PlL~hPN~WIR~~~~~iI~~~~~ 725 (1431)
T KOG1240|consen 695 K--DILQDVLPLLCHPNLWIRRAVLGIIAAIAR 725 (1431)
T ss_pred H--HHHHhhhhheeCchHHHHHHHHHHHHHHHh
Confidence 3 588888899999999999999999988754
No 148
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=96.61 E-value=0.043 Score=46.19 Aligned_cols=112 Identities=17% Similarity=0.178 Sum_probs=81.9
Q ss_pred HhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCC---------CCHHHHHHHHHHHHH
Q 017249 24 QALIEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVS---------PNLDAIESSLLALLN 94 (375)
Q Consensus 24 ~~~l~~Lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~---------~~~~~~~~a~~~L~~ 94 (375)
......++..+.+..... ..+..|.-.....+......|++.||+..|++.|.. .+.+....++++|..
T Consensus 65 ~~~p~~~i~~L~~~~~~~--~~L~~L~v~Lrt~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clka 142 (187)
T PF06371_consen 65 KSSPEWYIKKLKSRPSTS--KILKSLRVSLRTNPISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKA 142 (187)
T ss_dssp CHHHHHHHHHHTTT--HH--HHHHHHHHHHHHS-HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHccCccH--HHHHHHHHHhccCCchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHH
Confidence 345667788887654443 444444444555535778899999999999998842 356788999999999
Q ss_pred hhccChhhHHHHHH-cCChHHHHHhhcCCChHHHHHHHHHHHHhh
Q 017249 95 LAVRNERNKVKIAT-AGAIPPLVELLKFQNGTLRELAAAAILTLS 138 (375)
Q Consensus 95 L~~~~~~~r~~i~~-~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls 138 (375)
+.. +......+.. .+++..|+..|.+++..++..++.+|..++
T Consensus 143 l~n-~~~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~~leiL~~lc 186 (187)
T PF06371_consen 143 LMN-TKYGLEAVLSHPDSVNLIALSLDSPNIKTRKLALEILAALC 186 (187)
T ss_dssp HTS-SHHHHHHHHCSSSHHHHHHHT--TTSHHHHHHHHHHHHHHH
T ss_pred HHc-cHHHHHHHHcCcHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence 997 5666777776 789999999999999999999999998876
No 149
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=96.58 E-value=0.26 Score=41.22 Aligned_cols=93 Identities=16% Similarity=0.104 Sum_probs=72.8
Q ss_pred CHHHHHHHHHHHHHhhccChhhHHHHHHcCChHHHHHhhcCCChHHHHHHHHHHHHhhccCCChhHHHhcCChHHHHHHh
Q 017249 81 NLDAIESSLLALLNLAVRNERNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQIL 160 (375)
Q Consensus 81 ~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~l~~L~~lL 160 (375)
++.++..++.+++-|+...+..-+ ..+|.+...|.++++.+|..|+.+|..|...+-.+.. ...+..++.++
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~~ve-----~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~k---~~l~~~~l~~l 72 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPNLVE-----PYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKVK---GQLFSRILKLL 72 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcHHHH-----hHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceeeh---hhhhHHHHHHH
Confidence 467899999999999875443222 2377899999999999999999999999875432221 22347788889
Q ss_pred ccCCHHHHHHHHHHHHHhccC
Q 017249 161 HSGSVQGRVDAVTALHYLSTC 181 (375)
Q Consensus 161 ~~~~~~~~~~a~~~L~~L~~~ 181 (375)
.++++.++..|..++..+...
T Consensus 73 ~D~~~~Ir~~A~~~~~e~~~~ 93 (178)
T PF12717_consen 73 VDENPEIRSLARSFFSELLKK 93 (178)
T ss_pred cCCCHHHHHHHHHHHHHHHHh
Confidence 999999999999999998755
No 150
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=96.56 E-value=0.065 Score=44.82 Aligned_cols=146 Identities=13% Similarity=0.122 Sum_probs=93.6
Q ss_pred hHHHHHHHHHHHHhhCChhhhHHHhhccCcHHHHHHHhccCChHHHHHHHHHHHHhcccCcHHHHHHHHHcCChHHHHHH
Q 017249 208 SKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRL 287 (375)
Q Consensus 208 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~g~v~~L~~l 287 (375)
+.++-++..+++-|+....+ ++ ...++.+...|.++++.+|..|+.+|..|...+--. ++...+..++.+
T Consensus 2 ~~vR~n~i~~l~DL~~r~~~---~v--e~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik-----~k~~l~~~~l~~ 71 (178)
T PF12717_consen 2 PSVRNNAIIALGDLCIRYPN---LV--EPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIK-----VKGQLFSRILKL 71 (178)
T ss_pred HHHHHHHHHHHHHHHHhCcH---HH--HhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCcee-----ehhhhhHHHHHH
Confidence 35677788888877754322 22 357888999999999999999999999998765211 223344788888
Q ss_pred hhhCCHHHHHHHHHHHHHhhcCChhhhhhhhhHHHHHHHHhhcCCCh---HHHHHHHHHHHHHHHHHHH-HHhHHHHHHH
Q 017249 288 TVEGTFEAQERARTLLDLLRDTPQEKRLSSSVLEKIVYDIAARVDGA---DKAAETAKRLLQDMVQRSM-ELSMTRIQQR 363 (375)
Q Consensus 288 l~~~~~~~~~~A~~~L~~l~~~~~~~~~~~g~~~~l~~~l~~~~~g~---~~~~~~a~~~l~~l~~~s~-~~~~~~~~~~ 363 (375)
+.+.++.++..|..++..+........+.. .++.++..|....... +...++=..+++-|.+.-. ++....+++|
T Consensus 72 l~D~~~~Ir~~A~~~~~e~~~~~~~~~i~~-~~~e~i~~l~~~~~~~~~~~~~~~~~~~I~~fll~~i~~d~~~~~l~~k 150 (178)
T PF12717_consen 72 LVDENPEIRSLARSFFSELLKKRNPNIIYN-NFPELISSLNNCYEHPVYGPLSREKRKKIYKFLLDFIDKDKQKESLVEK 150 (178)
T ss_pred HcCCCHHHHHHHHHHHHHHHHhccchHHHH-HHHHHHHHHhCccccccccccCHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 899999999999999999988743333433 3444555554221110 2333444455555554433 5555555444
Q ss_pred h
Q 017249 364 A 364 (375)
Q Consensus 364 ~ 364 (375)
.
T Consensus 151 l 151 (178)
T PF12717_consen 151 L 151 (178)
T ss_pred H
Confidence 3
No 151
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.51 E-value=0.099 Score=52.67 Aligned_cols=216 Identities=14% Similarity=0.106 Sum_probs=132.5
Q ss_pred cCCChHHHHHHHHHHHHhhccCCChhHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCCCCchhhhhcCCcHHHHH
Q 017249 120 KFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLIN 199 (375)
Q Consensus 120 ~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~ 199 (375)
.++-+.++-.++..|..+.........+...+++...++.|++.++.+--+|...+..||.. .....+|.+..
T Consensus 737 ~d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcev-------y~e~il~dL~e 809 (982)
T KOG4653|consen 737 HDDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEV-------YPEDILPDLSE 809 (982)
T ss_pred cCCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHh-------cchhhHHHHHH
Confidence 34455678889999999998877777778889999999999999999999999988887753 33445666666
Q ss_pred Hhhhccc-c-hHHHHHHHHHHHHhhC--ChhhhHHHhhccCcHHHHHHHhccCChHHHHHHHHHHHHhcccCcHHHHHHH
Q 017249 200 LLKDCKK-Y-SKFAEKATALLEILSS--SEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLI 275 (375)
Q Consensus 200 ll~~~~~-~-~~~~~~a~~~L~~l~~--~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l 275 (375)
.-.+.+. . .+.+.....++.++.. ++-..+.. +-.+...+..+++++...|..+++.++++|........+.+
T Consensus 810 ~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~---~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~vsd~~ 886 (982)
T KOG4653|consen 810 EYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYK---AVLINTFLSGVREPDHEFRASSLANLGQLCQLLAFQVSDFF 886 (982)
T ss_pred HHHhcccCCCccceehHHHHHHHHHHHhccHHHHHH---HHHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhhhhhHHH
Confidence 4333221 1 1222223455554442 22111111 12233444445666677799999999999875421222211
Q ss_pred HHcCChHHHHHHhh-hCCHHHHHHHHHHHHHhhcCChhh---h---hhhhhHHHHHHHHhhcCCChHHHHHHHHHHHHHH
Q 017249 276 LKEGAIPGLLRLTV-EGTFEAQERARTLLDLLRDTPQEK---R---LSSSVLEKIVYDIAARVDGADKAAETAKRLLQDM 348 (375)
Q Consensus 276 ~~~g~v~~L~~ll~-~~~~~~~~~A~~~L~~l~~~~~~~---~---~~~g~~~~l~~~l~~~~~g~~~~~~~a~~~l~~l 348 (375)
..++..++.+.. ++++.+|+.|+.++..+-.+-.+. + ...+....+..... ......++-.|+.++..+
T Consensus 887 --~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpilr~~l~Dl~~tl~~~vr--~~~dd~~klhaql~leei 962 (982)
T KOG4653|consen 887 --HEVLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLPILRLLLIDLDETLLSYVR--QHDDDGLKLHAQLCLEEI 962 (982)
T ss_pred --HHHHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHh--cCchhHHHHHHHHHHHHH
Confidence 234444555444 678999999999999887755331 1 22334444444444 233356667777777766
Q ss_pred H
Q 017249 349 V 349 (375)
Q Consensus 349 ~ 349 (375)
-
T Consensus 963 ~ 963 (982)
T KOG4653|consen 963 Q 963 (982)
T ss_pred H
Confidence 4
No 152
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=96.50 E-value=0.014 Score=44.75 Aligned_cols=74 Identities=22% Similarity=0.237 Sum_probs=62.2
Q ss_pred hHhHHHHHHHHhc-CCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhc
Q 017249 23 KQALIEELSDKLI-NGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIESSLLALLNLAV 97 (375)
Q Consensus 23 ~~~~l~~Lv~~L~-s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~~~~~~~~~a~~~L~~L~~ 97 (375)
....+..|+.+|. +.|+....-|+.=|+.++... |..+..+-+.|+=..+.+++.+++++++.+|+.++..+-.
T Consensus 41 ~~~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~-p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~ 115 (119)
T PF11698_consen 41 NFELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHY-PNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLMV 115 (119)
T ss_dssp GGHHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH--GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHccCCCcceeehhhcchHHHHHHC-hhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 3557899999995 667888888999999999998 8888888788999999999999999999999999988764
No 153
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=96.42 E-value=0.017 Score=42.89 Aligned_cols=92 Identities=17% Similarity=0.194 Sum_probs=64.5
Q ss_pred HHHHHHHHHHhhccChhhHHHHHHcCChHHHHHhhcCCChHHHHHHHHHHHHhhccCCChhHHHhcCChHHHHHHhccCC
Q 017249 85 IESSLLALLNLAVRNERNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHSGS 164 (375)
Q Consensus 85 ~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~l~~L~~lL~~~~ 164 (375)
+..++.+|...+..-+.. ..-+-...+++++..+.+++..+|..|+.+|.|++.........--...++.|.+++.+++
T Consensus 3 R~ggli~Laa~ai~l~~~-~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d 81 (97)
T PF12755_consen 3 RKGGLIGLAAVAIALGKD-ISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADPD 81 (97)
T ss_pred hhHHHHHHHHHHHHchHh-HHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 456667777766543333 2223345789999999999999999999999999876443222223567888899999998
Q ss_pred HHHHHHHHHHHHHh
Q 017249 165 VQGRVDAVTALHYL 178 (375)
Q Consensus 165 ~~~~~~a~~~L~~L 178 (375)
+.++..| ..|-+|
T Consensus 82 ~~Vr~~a-~~Ld~l 94 (97)
T PF12755_consen 82 ENVRSAA-ELLDRL 94 (97)
T ss_pred hhHHHHH-HHHHHH
Confidence 8877666 455544
No 154
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.39 E-value=0.77 Score=48.20 Aligned_cols=216 Identities=18% Similarity=0.183 Sum_probs=123.7
Q ss_pred CCChHHHHHHHHHHHHhhccCCChhHHH--hcCChHHHHHHhccCCHHHHHHHHHHHHHhccCC--CCchhhhhcCCcHH
Q 017249 121 FQNGTLRELAAAAILTLSAAAPNKPAIA--ASGAAPLLVQILHSGSVQGRVDAVTALHYLSTCK--ENSSPILDATAVPP 196 (375)
Q Consensus 121 ~~~~~~~~~a~~~L~~Ls~~~~~~~~i~--~~~~l~~L~~lL~~~~~~~~~~a~~~L~~L~~~~--~~~~~i~~~g~i~~ 196 (375)
+.+..+|..+..+|..++..+....... .......|.+-+++.....+...+.+|..|-... +.+..+. . .++.
T Consensus 665 ~~~~~vQkK~yrlL~~l~~~~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i~-k-~I~E 742 (1176)
T KOG1248|consen 665 SSSTKVQKKAYRLLEELSSSPSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLIP-K-LIPE 742 (1176)
T ss_pred cccHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHHH-H-HHHH
Confidence 3378889999999999988755433322 1233445555556666677888888877776432 2222222 1 3333
Q ss_pred HHHHhhhcccchHHHHHHHHHHHHhhC----ChhhhHHHhhccCcHHHHHHHhccC--ChHHHHHH--HHHHHHhcccCc
Q 017249 197 LINLLKDCKKYSKFAEKATALLEILSS----SEEGRIAITNSDGGILTLVETVEDG--SLVSTQHA--VGALLSLCQSCR 268 (375)
Q Consensus 197 Lv~ll~~~~~~~~~~~~a~~~L~~l~~----~~~~~~~~~~~~g~v~~Lv~lL~~~--~~~~~~~a--~~~L~~l~~~~~ 268 (375)
++-.+... +...++.+..+|..++. ...+... . ...+...+..+..+ .+..+..| +-++..+...
T Consensus 743 vIL~~Ke~--n~~aR~~Af~lL~~i~~i~~~~d~g~e~-~--~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~e-- 815 (1176)
T KOG1248|consen 743 VILSLKEV--NVKARRNAFALLVFIGAIQSSLDDGNEP-A--SAILNEFLSIISAGLVGDSTRVVASDIVAITHILQE-- 815 (1176)
T ss_pred HHHhcccc--cHHHHhhHHHHHHHHHHHHhhhcccccc-h--HHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHH--
Confidence 33333433 44567788888887773 0111000 0 01333444444322 22222333 3333333322
Q ss_pred HHHHHHHHH----cCChHHHHHHhhhCCHHHHHHHHHHHHHhhcCChhhhhh---hhhHHHHHHHHhhcCCChHHHHHHH
Q 017249 269 DKYRQLILK----EGAIPGLLRLTVEGTFEAQERARTLLDLLRDTPQEKRLS---SSVLEKIVYDIAARVDGADKAAETA 341 (375)
Q Consensus 269 ~~~~~~l~~----~g~v~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~~~~~~---~g~~~~l~~~l~~~~~g~~~~~~~a 341 (375)
...+.. .+.++.+.-++.++++++.+.|+..+..+...-+...++ ..+++.++.++ .+++...+.+.
T Consensus 816 ---~~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls---~d~k~~~r~Kv 889 (1176)
T KOG1248|consen 816 ---FKNILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALS---HDHKIKVRKKV 889 (1176)
T ss_pred ---HhccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHH---HhhhHHHHHHH
Confidence 111223 344555556777899999999999999998877764443 33677666544 46777888888
Q ss_pred HHHHHHHHHH
Q 017249 342 KRLLQDMVQR 351 (375)
Q Consensus 342 ~~~l~~l~~~ 351 (375)
+-+++.|++.
T Consensus 890 r~LlekLirk 899 (1176)
T KOG1248|consen 890 RLLLEKLIRK 899 (1176)
T ss_pred HHHHHHHHHH
Confidence 8899988766
No 155
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.38 E-value=0.21 Score=49.97 Aligned_cols=208 Identities=15% Similarity=0.070 Sum_probs=140.1
Q ss_pred hhccChhhHHHHHHcCChHHHHHhhcCCChHHHHHHHHHHH-HhhccCCChhHHHhcCChHHHHHHhccCC-HHHHHHHH
Q 017249 95 LAVRNERNKVKIATAGAIPPLVELLKFQNGTLRELAAAAIL-TLSAAAPNKPAIAASGAAPLLVQILHSGS-VQGRVDAV 172 (375)
Q Consensus 95 L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~-~Ls~~~~~~~~i~~~~~l~~L~~lL~~~~-~~~~~~a~ 172 (375)
++.....-|...++.|+...|+.+.....+..+.....+|. .+..... .....++++...++... ..-...++
T Consensus 489 ~aA~~K~~~~~~Ik~~~~~aLlrl~~~q~e~akl~~~~aL~~~i~f~~~-----~~~~v~~~~~s~~~~d~~~~en~E~L 563 (748)
T KOG4151|consen 489 LAAKEKYERAKKIKPGGYEALLRLGQQQFEEAKLKWYHALAGKIDFPGE-----RSYEVVKPLDSALHNDEKGLENFEAL 563 (748)
T ss_pred HhhhhHHhcCccccccHHHHHHHHHHHhchHHHHHHHHHHhhhcCCCCC-----chhhhhhhhcchhhhhHHHHHHHHHH
Confidence 33335667788889999999999998888888888888887 2222111 12344555555554432 23366788
Q ss_pred HHHHHhccCC-CCchhhhhcCCcHHHHHHhhhcccchHHHHHHHHHHHHhhCChhhhHHHhhc-cCcHHHHHHHhccCCh
Q 017249 173 TALHYLSTCK-ENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNS-DGGILTLVETVEDGSL 250 (375)
Q Consensus 173 ~~L~~L~~~~-~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~-~g~v~~Lv~lL~~~~~ 250 (375)
.++.||++.+ ..+..+...-+++.+-..+... ++..+..++..+.||..++......+.+ ...++.....+.....
T Consensus 564 ~altnLas~s~s~r~~i~ke~~~~~ie~~~~ee--~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~~e~~~E 641 (748)
T KOG4151|consen 564 EALTNLASISESDRQKILKEKALGKIEELMTEE--NPALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNLNLEVADE 641 (748)
T ss_pred HHhhcccCcchhhHHHHHHHhcchhhHHHhhcc--cHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHHHHHhhhh
Confidence 8999998764 5566677766666655555554 4467888999999999998876665544 3455555555655556
Q ss_pred HHHHHHHHHHHHhcccCcHHHHH-HHHHcCChHHHHHHhhhCCHHHHHHHHHHHHHhhcCC
Q 017249 251 VSTQHAVGALLSLCQSCRDKYRQ-LILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDTP 310 (375)
Q Consensus 251 ~~~~~a~~~L~~l~~~~~~~~~~-~l~~~g~v~~L~~ll~~~~~~~~~~A~~~L~~l~~~~ 310 (375)
.....+++++..+..... .++. ...-..+...++.++.+.++.+|........++.+..
T Consensus 642 ~~~lA~a~a~a~I~sv~~-n~c~~~~~~~~~~e~~~~~i~~~~~~~qhrgl~~~ln~~~~~ 701 (748)
T KOG4151|consen 642 KFELAGAGALAAITSVVE-NHCSRILELLEWLEILVRAIQDEDDEIQHRGLVIILNLFEAL 701 (748)
T ss_pred HHhhhccccccchhhcch-hhhhhHHHhhcchHHHHHhhcCchhhhhhhhhhhhhhHHHHH
Confidence 666677777765555442 3333 3333678888999999999999999888666655444
No 156
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=96.35 E-value=0.28 Score=44.00 Aligned_cols=226 Identities=15% Similarity=0.106 Sum_probs=139.2
Q ss_pred cCCCHHHHHHHHHHHHHHHhhCChhhHHHH-HhcCChHHHHHhhCCC--CHHHHHHHHHHHHHhhccChhhHHHHHH-cC
Q 017249 35 INGDLETKIEAARDIRKVVKKSSLKTRSEF-AAAGVVQPLVLMLVSP--NLDAIESSLLALLNLAVRNERNKVKIAT-AG 110 (375)
Q Consensus 35 ~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~-~~~g~v~~Lv~~L~~~--~~~~~~~a~~~L~~L~~~~~~~r~~i~~-~g 110 (375)
++-++-.+.-|+.++.++.... +.|... .+...-..+++.++.. +.++|-.++-++..++. ++.+.+.+-+ -.
T Consensus 159 Q~i~~lTrlfav~cl~~l~~~~--e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf-~~~~aqdi~K~~d 235 (432)
T COG5231 159 QLIDFLTRLFAVSCLSNLEFDV--EKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTF-SKECAQDIDKMDD 235 (432)
T ss_pred HHHHHHHHHHHHHHHhhhhhhH--HHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhc-CHHHHHHHHHHHH
Confidence 3445556777888888888877 677655 4445566777888664 46788899999999998 5555544443 35
Q ss_pred ChHHHHHhhcCC-ChHHHHHHHHHHHHhhccCCChhHH---HhcCChHHHHHHhccC---CHHHHHHHH---HH------
Q 017249 111 AIPPLVELLKFQ-NGTLRELAAAAILTLSAAAPNKPAI---AASGAAPLLVQILHSG---SVQGRVDAV---TA------ 174 (375)
Q Consensus 111 ~i~~Lv~lL~~~-~~~~~~~a~~~L~~Ls~~~~~~~~i---~~~~~l~~L~~lL~~~---~~~~~~~a~---~~------ 174 (375)
.+..|+++.+.. ...+...++.++.|+..-.+ +..| .-.|-+..-++.|... +.+++...- ..
T Consensus 236 li~dli~iVk~~~keKV~Rlc~~Iv~n~~dK~p-K~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~i~s~l~~~~k 314 (432)
T COG5231 236 LINDLIAIVKERAKEKVLRLCCGIVANVLDKSP-KGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIERIRSRLVQNTK 314 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-cchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhhh
Confidence 577778887765 56677788888999876322 2222 2233344444544322 222111110 00
Q ss_pred --------HHHh-----ccCC---------CCchhhhh--cCCcHHHHHHhhhcccchHHHHHHHHHHHHhhCChhhhHH
Q 017249 175 --------LHYL-----STCK---------ENSSPILD--ATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIA 230 (375)
Q Consensus 175 --------L~~L-----~~~~---------~~~~~i~~--~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~~~~~~~~ 230 (375)
+..| +.++ .|...+.+ ...+..|.++++...++.-+..++-.+...+-..|+.+..
T Consensus 315 ~l~~fD~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE~~~v 394 (432)
T COG5231 315 KLCIFDNYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSNNPNTWICVACSDIFQLVRASPEINAV 394 (432)
T ss_pred hhhHHHHHHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCchHHHH
Confidence 1111 1111 12233332 2467788888887654433333333333344457888887
Q ss_pred HhhccCcHHHHHHHhccCChHHHHHHHHHHHHhcc
Q 017249 231 ITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQ 265 (375)
Q Consensus 231 ~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~ 265 (375)
+. ..|+-..++.++.++++.++-+|+.++..+..
T Consensus 395 l~-Kyg~k~~im~L~nh~d~~VkfeAl~a~q~~i~ 428 (432)
T COG5231 395 LS-KYGVKEIIMNLINHDDDDVKFEALQALQTCIS 428 (432)
T ss_pred HH-HhhhHHHHHHHhcCCCchhhHHHHHHHHHHHh
Confidence 77 68999999999999999999999999876543
No 157
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=96.34 E-value=0.62 Score=47.58 Aligned_cols=304 Identities=13% Similarity=0.088 Sum_probs=165.3
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhccChhhHHHHH
Q 017249 28 EELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIESSLLALLNLAVRNERNKVKIA 107 (375)
Q Consensus 28 ~~Lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~~~~~~~~~a~~~L~~L~~~~~~~r~~i~ 107 (375)
++....++....+.+..++.-...++...+..++..+.....++.+-.+..+.+..++...+.....+.--.+ +.. .
T Consensus 358 ~~~~~l~~~~~~e~r~a~a~~~~~l~~~l~~~~~~~i~~~~ilp~~~~lv~d~~~~vr~a~a~~~~~~~p~~~--k~~-t 434 (759)
T KOG0211|consen 358 PPVSNLLKDEEWEVRYAIAKKVQKLACYLNASCYPNIPDSSILPEVQVLVLDNALHVRSALASVITGLSPILP--KER-T 434 (759)
T ss_pred hhHHHHhcchhhhhhHHhhcchHHHhhhcCcccccccchhhhhHHHHHHHhcccchHHHHHhccccccCccCC--cCc-C
Confidence 3334444444444444444444444433312223333344445555556666666666655555555442222 000 0
Q ss_pred HcCChHHHHHhhcCCChHHHHHHHHHHHHhhccCC-ChhHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCCCCch
Q 017249 108 TAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAP-NKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTCKENSS 186 (375)
Q Consensus 108 ~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~-~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~~L~~~~~~~~ 186 (375)
-.-..|.++..++...+.++....+.+..+-...+ ..........++.+..+-......++....+.+..++.... .
T Consensus 435 i~~llp~~~~~l~de~~~V~lnli~~ls~~~~v~~v~g~~~~s~slLp~i~el~~d~~wRvr~ail~~ip~la~q~~--~ 512 (759)
T KOG0211|consen 435 ISELLPLLIGNLKDEDPIVRLNLIDKLSLLEEVNDVIGISTVSNSLLPAIVELAEDLLWRVRLAILEYIPQLALQLG--V 512 (759)
T ss_pred ccccChhhhhhcchhhHHHHHhhHHHHHHHHhccCcccchhhhhhhhhhhhhhccchhHHHHHHHHHHHHHHHHhhh--h
Confidence 12235666667777788888887776655533322 22233345567777777666667778888888777775432 1
Q ss_pred hhhhcCCcHHHHHHhhhc--ccchHHHHHHHHHHHHhhCChhhhHHHhhccCcHHHHHHHhccCChHHHHHHHHHHHHhc
Q 017249 187 PILDATAVPPLINLLKDC--KKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLC 264 (375)
Q Consensus 187 ~i~~~g~i~~Lv~ll~~~--~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~ 264 (375)
.+... .+..++... +....+++.|...+..++..-. ..... ...++.++.....++-..|...+.++..++
T Consensus 513 ~~~~~----~~~~l~~~~l~d~v~~Ir~~aa~~l~~l~~~~G-~~w~~--~~~i~k~L~~~~q~~y~~R~t~l~si~~la 585 (759)
T KOG0211|consen 513 EFFDE----KLAELLRTWLPDHVYSIREAAARNLPALVETFG-SEWAR--LEEIPKLLAMDLQDNYLVRMTTLFSIHELA 585 (759)
T ss_pred HHhhH----HHHHHHHhhhhhhHHHHHHHHHHHhHHHHHHhC-cchhH--HHhhHHHHHHhcCcccchhhHHHHHHHHHH
Confidence 22221 122333221 1122566777777766664322 22211 245666666655555555666566655554
Q ss_pred ccCcHHHHHHHHHcCChHHHHHHhhhCCHHHHHHHHHHHHHhhcCChhhhhhhhhHHHHHHHHhhcCCChHHHH-HHHHH
Q 017249 265 QSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDTPQEKRLSSSVLEKIVYDIAARVDGADKAA-ETAKR 343 (375)
Q Consensus 265 ~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~~~~~~~g~~~~l~~~l~~~~~g~~~~~-~~a~~ 343 (375)
.-. -+.+.....+|.+..+..+..+.+|-+++..|..+...-.......-+.+.+ ..|....+.+-+-+ ..|..
T Consensus 586 ~v~----g~ei~~~~Llp~~~~l~~D~vanVR~nvak~L~~i~~~L~~~~~~~~v~pll-~~L~~d~~~dvr~~a~~a~~ 660 (759)
T KOG0211|consen 586 EVL----GQEITCEDLLPVFLDLVKDPVANVRINVAKHLPKILKLLDESVRDEEVLPLL-ETLSSDQELDVRYRAILAFG 660 (759)
T ss_pred HHh----ccHHHHHHHhHHHHHhccCCchhhhhhHHHHHHHHHhhcchHHHHHHHHHHH-HHhccCcccchhHHHHHHHH
Confidence 332 2235667789999999999999999999999988876554444444455544 45665555544443 55555
Q ss_pred HHHHH
Q 017249 344 LLQDM 348 (375)
Q Consensus 344 ~l~~l 348 (375)
.+...
T Consensus 661 ~i~l~ 665 (759)
T KOG0211|consen 661 SIELS 665 (759)
T ss_pred HHHHH
Confidence 55444
No 158
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function. It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).
Probab=96.28 E-value=0.021 Score=48.17 Aligned_cols=123 Identities=15% Similarity=0.113 Sum_probs=85.5
Q ss_pred CCCHHHHHHHHHHHHHhhccChhhHHHHHH----------------cCChHHHHHhhcC------CChHHHHHHHHHHHH
Q 017249 79 SPNLDAIESSLLALLNLAVRNERNKVKIAT----------------AGAIPPLVELLKF------QNGTLRELAAAAILT 136 (375)
Q Consensus 79 ~~~~~~~~~a~~~L~~L~~~~~~~r~~i~~----------------~g~i~~Lv~lL~~------~~~~~~~~a~~~L~~ 136 (375)
.+.......++..|.|+++. +.....+.. ...+..|+..+.. +...-..+.+.++.|
T Consensus 6 ~~~~~~adl~~MLLsNlT~~-~~~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~N 84 (192)
T PF04063_consen 6 DPKSPLADLACMLLSNLTRS-DSGCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLAN 84 (192)
T ss_pred CCCcchHHHHHHHHHHhccc-hHHHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHH
Confidence 34445667788889999984 444443332 1246677777654 234446688899999
Q ss_pred hhccCCChhHHHhc--CC--hHHHHHHhccCCHHHHHHHHHHHHHhccCCCCchhhhhc---CCcHHHHHHhh
Q 017249 137 LSAAAPNKPAIAAS--GA--APLLVQILHSGSVQGRVDAVTALHYLSTCKENSSPILDA---TAVPPLINLLK 202 (375)
Q Consensus 137 Ls~~~~~~~~i~~~--~~--l~~L~~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~---g~i~~Lv~ll~ 202 (375)
++..+++|..+... +. +..|+..+.+.+..-+..++.+|.|+|...+....+... +++|.|+--+.
T Consensus 85 lS~~~~gR~~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrNccFd~~~H~~LL~~~~~~iLp~LLlPLa 157 (192)
T PF04063_consen 85 LSQLPEGRQFFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRNCCFDTDSHEWLLSDDEVDILPYLLLPLA 157 (192)
T ss_pred hcCCHHHHHHHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHHHhhccHhHHHHhcCchhhhhHHHHHhhcc
Confidence 99999999988743 44 677888888887777899999999999887776766653 44444444443
No 159
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.27 E-value=0.53 Score=47.04 Aligned_cols=137 Identities=12% Similarity=0.110 Sum_probs=78.8
Q ss_pred CChHHHHHHhccCCHHHHHHHHHHHHHhccCCCCchhhhhcCCcHHHHHHhhh-----c----ccchHHHHHHHHHHHHh
Q 017249 151 GAAPLLVQILHSGSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKD-----C----KKYSKFAEKATALLEIL 221 (375)
Q Consensus 151 ~~l~~L~~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~ll~~-----~----~~~~~~~~~a~~~L~~l 221 (375)
|.+--++.+|.+++.+++..++.....|....+ +..++.+|.. . .+....+......+...
T Consensus 317 ~l~mDvLrvLss~dldvr~Ktldi~ldLvssrN----------vediv~~Lkke~~kT~~~e~d~~~~yRqlLiktih~c 386 (948)
T KOG1058|consen 317 GLIMDVLRVLSSPDLDVRSKTLDIALDLVSSRN----------VEDIVQFLKKEVMKTHNEESDDNGKYRQLLIKTIHAC 386 (948)
T ss_pred HHHHHHHHHcCcccccHHHHHHHHHHhhhhhcc----------HHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHH
Confidence 344455667788888888888888777765422 2222222221 1 11234556666777666
Q ss_pred hC-ChhhhHHHhhccCcHHHHHHHhccCChHHHHHHHHHHHHhcccCcHHHHHHHHHcCChHHHHHHhh-hCCHHHHHHH
Q 017249 222 SS-SEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTV-EGTFEAQERA 299 (375)
Q Consensus 222 ~~-~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~g~v~~L~~ll~-~~~~~~~~~A 299 (375)
+. .++. .+..|+.|+.++.+.++......+..+......- |.. +...++.|++.+. -.+..+-+.|
T Consensus 387 av~Fp~~------aatvV~~ll~fisD~N~~aas~vl~FvrE~iek~-p~L-----r~~ii~~l~~~~~~irS~ki~rga 454 (948)
T KOG1058|consen 387 AVKFPEV------AATVVSLLLDFISDSNEAAASDVLMFVREAIEKF-PNL-----RASIIEKLLETFPQIRSSKICRGA 454 (948)
T ss_pred hhcChHH------HHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhC-chH-----HHHHHHHHHHhhhhhcccccchhH
Confidence 64 3432 2457889999999888766555555555544333 232 2344555665443 3556666777
Q ss_pred HHHHHHhhcC
Q 017249 300 RTLLDLLRDT 309 (375)
Q Consensus 300 ~~~L~~l~~~ 309 (375)
.|++.--+..
T Consensus 455 lwi~GeYce~ 464 (948)
T KOG1058|consen 455 LWILGEYCEG 464 (948)
T ss_pred HHHHHHHHhh
Confidence 7777655543
No 160
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=96.26 E-value=0.37 Score=49.92 Aligned_cols=238 Identities=19% Similarity=0.159 Sum_probs=132.6
Q ss_pred CChHHHHHhhCCCCHHHHHHHHHHHHHhhccChhhHHHHHHcCChHHHHHhhcCC-ChHHHHHHHHHHHHhhccCCChhH
Q 017249 68 GVVQPLVLMLVSPNLDAIESSLLALLNLAVRNERNKVKIATAGAIPPLVELLKFQ-NGTLRELAAAAILTLSAAAPNKPA 146 (375)
Q Consensus 68 g~v~~Lv~~L~~~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~-~~~~~~~a~~~L~~Ls~~~~~~~~ 146 (375)
++++.|++.|++.+..+++.|++.++.++...| +.. ...++...++++.-. ++..-..++-+|..|+...=-...
T Consensus 341 ~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp--~~L--ad~vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLlps 416 (1133)
T KOG1943|consen 341 FVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLP--PEL--ADQVIGSVIDLFNPAEDDSAWHGACLALAELALRGLLLPS 416 (1133)
T ss_pred HHHHHHHHhccCCcchhhHHHHHHHHHHHccCc--HHH--HHHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcchH
Confidence 568888899999999999999999999998766 221 122455666655433 355666888889998764322111
Q ss_pred HHhcCChHHHHHHhccC--------CHHHHHHHHHHHHHhccCC--CCchhhhhcCCcHH-HHHHhhhcccchHHHHHHH
Q 017249 147 IAASGAAPLLVQILHSG--------SVQGRVDAVTALHYLSTCK--ENSSPILDATAVPP-LINLLKDCKKYSKFAEKAT 215 (375)
Q Consensus 147 i~~~~~l~~L~~lL~~~--------~~~~~~~a~~~L~~L~~~~--~~~~~i~~~g~i~~-Lv~ll~~~~~~~~~~~~a~ 215 (375)
. -..++|.+++-|.-. ...++..||-++|.++... .....++.. ..+. |...+-+. .-..+.+|.
T Consensus 417 ~-l~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~-L~s~LL~~AlFDr--evncRRAAs 492 (1133)
T KOG1943|consen 417 L-LEDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQS-LASALLIVALFDR--EVNCRRAAS 492 (1133)
T ss_pred H-HHHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHH-HHHHHHHHHhcCc--hhhHhHHHH
Confidence 1 124456666655322 2467889999999988542 222222221 1122 22222222 335677777
Q ss_pred HHHHHhhCChhhhHHHhhccCcHHHHHHHhccCChHHHHHHHHHHHHhcccCcHHHHHHHHHcCChHHHHHH-hhhCCHH
Q 017249 216 ALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRL-TVEGTFE 294 (375)
Q Consensus 216 ~~L~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~g~v~~L~~l-l~~~~~~ 294 (375)
+++........+. ..++ .|+...+.-+-..+.++-..++.-...- +..+. -++.+|+.. +.+=++.
T Consensus 493 AAlqE~VGR~~n~------p~Gi-~Lis~~dy~sV~~rsNcy~~l~~~ia~~-~~y~~-----~~f~~L~t~Kv~HWd~~ 559 (1133)
T KOG1943|consen 493 AALQENVGRQGNF------PHGI-SLISTIDYFSVTNRSNCYLDLCVSIAEF-SGYRE-----PVFNHLLTKKVCHWDVK 559 (1133)
T ss_pred HHHHHHhccCCCC------CCch-hhhhhcchhhhhhhhhHHHHHhHHHHhh-hhHHH-----HHHHHHHhcccccccHH
Confidence 7777544321111 1111 1222222222333334333333222111 12222 233344442 4456899
Q ss_pred HHHHHHHHHHHhhcCChhhhhhhhhHHHHHHHH
Q 017249 295 AQERARTLLDLLRDTPQEKRLSSSVLEKIVYDI 327 (375)
Q Consensus 295 ~~~~A~~~L~~l~~~~~~~~~~~g~~~~l~~~l 327 (375)
+|+.|+++|..|+...+ +....+++++++...
T Consensus 560 irelaa~aL~~Ls~~~p-k~~a~~~L~~lld~~ 591 (1133)
T KOG1943|consen 560 IRELAAYALHKLSLTEP-KYLADYVLPPLLDST 591 (1133)
T ss_pred HHHHHHHHHHHHHHhhH-Hhhcccchhhhhhhh
Confidence 99999999999887665 455566777777654
No 161
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=96.12 E-value=0.26 Score=44.97 Aligned_cols=170 Identities=15% Similarity=0.143 Sum_probs=107.9
Q ss_pred CChHHHH-HhhCCCCHHHHHHHHHHHHHhhccChhhHHHHHHcCChHHHHHhhcCCChHHHHHHHHHHHHhhccCC--Ch
Q 017249 68 GVVQPLV-LMLVSPNLDAIESSLLALLNLAVRNERNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAP--NK 144 (375)
Q Consensus 68 g~v~~Lv-~~L~~~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~--~~ 144 (375)
+.+..|+ ..+.++++.+|+.|+++|+-.+--+.+.... .++.+...+..+++.++..|+.++..+...-. ..
T Consensus 26 ~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a~~-----~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~ 100 (298)
T PF12719_consen 26 SLLDSLILPAVQSSDPAVRELALKCLGLCCLLDKELAKE-----HLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIF 100 (298)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHHHH-----HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhc
Confidence 4455554 6778899999999999999988754422222 26678888877799999999999998764322 11
Q ss_pred hH-------HHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCCCCchhhhhcCCcHHHHHHhhhcc-c-chHHHHHHH
Q 017249 145 PA-------IAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDCK-K-YSKFAEKAT 215 (375)
Q Consensus 145 ~~-------i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~~-~-~~~~~~~a~ 215 (375)
.. ......++.+.+.+.+.+++++..++..++.|--...... ...++..|+-+.-++. . ...++..-.
T Consensus 101 ~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~---~~~vL~~Lll~yF~p~t~~~~~LrQ~L~ 177 (298)
T PF12719_consen 101 DSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISD---PPKVLSRLLLLYFNPSTEDNQRLRQCLS 177 (298)
T ss_pred cchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCc---HHHHHHHHHHHHcCcccCCcHHHHHHHH
Confidence 11 1234577788889999999999999999999875433222 1233444444433322 1 224443233
Q ss_pred HHHHHhhCCh-hhhHHHhhccCcHHHHHHHhcc
Q 017249 216 ALLEILSSSE-EGRIAITNSDGGILTLVETVED 247 (375)
Q Consensus 216 ~~L~~l~~~~-~~~~~~~~~~g~v~~Lv~lL~~ 247 (375)
..+-..+... .++..+. ..+++.+-.+...
T Consensus 178 ~Ffp~y~~s~~~~Q~~l~--~~f~~~l~~~~~~ 208 (298)
T PF12719_consen 178 VFFPVYASSSPENQERLA--EAFLPTLRTLSNA 208 (298)
T ss_pred HHHHHHHcCCHHHHHHHH--HHHHHHHHHHHhC
Confidence 3344666554 4554444 4677777776654
No 162
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.08 E-value=1.9 Score=43.53 Aligned_cols=260 Identities=17% Similarity=0.139 Sum_probs=129.1
Q ss_pred hHHHHHhhCCCCHHHHHHHHHHHHHhhccChhhHHHHHHcCChHHHHHhhcCCChHHHHHHHHHHHHhhccCCChhH---
Q 017249 70 VQPLVLMLVSPNLDAIESSLLALLNLAVRNERNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPA--- 146 (375)
Q Consensus 70 v~~Lv~~L~~~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~--- 146 (375)
.+.+=.+|++.+.-+.-.|++++.++..-+. |..-- .+..|-.++.++...+|..|..+|..++...+.+..
T Consensus 247 ~~fl~s~l~~K~emV~~EaArai~~l~~~~~--r~l~p---avs~Lq~flssp~~~lRfaAvRtLnkvAm~~P~~v~~cN 321 (865)
T KOG1078|consen 247 FPFLESCLRHKSEMVIYEAARAIVSLPNTNS--RELAP---AVSVLQLFLSSPKVALRFAAVRTLNKVAMKHPQAVTVCN 321 (865)
T ss_pred HHHHHHHHhchhHHHHHHHHHHHhhccccCH--hhcch---HHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCCccccccc
Confidence 4445556677788889999999999886432 22111 677888888999999999999999999865443211
Q ss_pred ------HHhc---CChHHHHHHhccCCHHHHHHHHHHHHHhccC--CCCchhhhhcCCcHHHHHHhhhcccchHHHHHHH
Q 017249 147 ------IAAS---GAAPLLVQILHSGSVQGRVDAVTALHYLSTC--KENSSPILDATAVPPLINLLKDCKKYSKFAEKAT 215 (375)
Q Consensus 147 ------i~~~---~~l~~L~~lL~~~~~~~~~~a~~~L~~L~~~--~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~ 215 (375)
+.+. -.-.++..+|+.++.........-+.+...+ ++.+..+++ .+..|....... ...-.
T Consensus 322 ~elE~lItd~NrsIat~AITtLLKTG~e~sv~rLm~qI~~fv~disDeFKivvvd--ai~sLc~~fp~k------~~~~m 393 (865)
T KOG1078|consen 322 LDLESLITDSNRSIATLAITTLLKTGTESSVDRLMKQISSFVSDISDEFKIVVVD--AIRSLCLKFPRK------HTVMM 393 (865)
T ss_pred hhHHhhhcccccchhHHHHHHHHHhcchhHHHHHHHHHHHHHHhccccceEEeHH--HHHHHHhhccHH------HHHHH
Confidence 1111 0122344444444433222222222222211 122211111 122221111100 01111
Q ss_pred HHHHHhhCChhhhHHHhhccCcHHHHHHHhccCChHHHHHHHHHHHHhcccCcH-H----HHHHHHHcC--------ChH
Q 017249 216 ALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRD-K----YRQLILKEG--------AIP 282 (375)
Q Consensus 216 ~~L~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~-~----~~~~l~~~g--------~v~ 282 (375)
..|.++-..+.+-... ...|+.++..+.. ++..++.++.-|+.+..++.- + .-..+..+| -+.
T Consensus 394 ~FL~~~Lr~eGg~e~K---~aivd~Ii~iie~-~pdsKe~~L~~LCefIEDce~~~i~~rILhlLG~EgP~a~~Pskyir 469 (865)
T KOG1078|consen 394 NFLSNMLREEGGFEFK---RAIVDAIIDIIEE-NPDSKERGLEHLCEFIEDCEFTQIAVRILHLLGKEGPKAPNPSKYIR 469 (865)
T ss_pred HHHHHHHHhccCchHH---HHHHHHHHHHHHh-CcchhhHHHHHHHHHHHhccchHHHHHHHHHHhccCCCCCCcchhhH
Confidence 2222222111111000 0123344444432 344555666666555443310 0 011112222 344
Q ss_pred HHHHHhhhCCHHHHHHHHHHHHHhhcCChhhhhhhhhHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHH
Q 017249 283 GLLRLTVEGTFEAQERARTLLDLLRDTPQEKRLSSSVLEKIVYDIAARVDGADKAAETAKRLLQDMVQR 351 (375)
Q Consensus 283 ~L~~ll~~~~~~~~~~A~~~L~~l~~~~~~~~~~~g~~~~l~~~l~~~~~g~~~~~~~a~~~l~~l~~~ 351 (375)
.....+.-.+..+|-.|+.+|..+.-.. +.....+...+-+.+ .|.+...++.|.-.|+.+.++
T Consensus 470 ~iyNRviLEn~ivRaaAv~alaKfg~~~--~~l~~sI~vllkRc~---~D~DdevRdrAtf~l~~l~~~ 533 (865)
T KOG1078|consen 470 FIYNRVILENAIVRAAAVSALAKFGAQD--VVLLPSILVLLKRCL---NDSDDEVRDRATFYLKNLEEK 533 (865)
T ss_pred HHhhhhhhhhhhhHHHHHHHHHHHhcCC--CCccccHHHHHHHHh---cCchHHHHHHHHHHHHHhhhh
Confidence 4455555577889999999999998222 223333444343333 466689999999999999843
No 163
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=96.08 E-value=0.05 Score=55.06 Aligned_cols=185 Identities=18% Similarity=0.176 Sum_probs=123.0
Q ss_pred hHHHHHhhCCCCHHHHHHHHHHHHHhhccChhhHH--------HHHH----cCChHHHHHhhcCCChHHHHHHHHHHHHh
Q 017249 70 VQPLVLMLVSPNLDAIESSLLALLNLAVRNERNKV--------KIAT----AGAIPPLVELLKFQNGTLRELAAAAILTL 137 (375)
Q Consensus 70 v~~Lv~~L~~~~~~~~~~a~~~L~~L~~~~~~~r~--------~i~~----~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L 137 (375)
-..|+.+|+.+ ++-..+..++.-+..|++..+. .+++ ...+|.|++.........+..=+.+|.++
T Consensus 817 a~klld~Ls~~--~~g~~aa~~fsiim~D~~~~~~r~~~a~~riLykQRfF~~ivP~l~~~~~t~~~~~K~~yl~~LshV 894 (1030)
T KOG1967|consen 817 AEKLLDLLSGP--STGSPAAKLFSIIMSDSNPLLKRKGHAEPRILYKQRFFCDIVPILVSKFETAPGSQKHNYLEALSHV 894 (1030)
T ss_pred HHHHHHhcCCc--cccchHHHhhHhhhccChHHhhhccccchhHHHHHHHHHhhHHHHHHHhccCCccchhHHHHHHHHH
Confidence 44566777664 3344455555555554433221 2222 45688888888755556666667777777
Q ss_pred hccCCChhHHH--hcCChHHHHHHhccCCHHHHHHHHHHHHHhccCC-CCchhhhhcCCcHHHHHHhhhcccc-hHHHHH
Q 017249 138 SAAAPNKPAIA--ASGAAPLLVQILHSGSVQGRVDAVTALHYLSTCK-ENSSPILDATAVPPLINLLKDCKKY-SKFAEK 213 (375)
Q Consensus 138 s~~~~~~~~i~--~~~~l~~L~~lL~~~~~~~~~~a~~~L~~L~~~~-~~~~~i~~~g~i~~Lv~ll~~~~~~-~~~~~~ 213 (375)
..+-+. +.+. -...+|.|++.|.-++..++.++..++.-+.... .-...-+ ...+|.++.+=.+.+.. ..+++.
T Consensus 895 l~~vP~-~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~t~~~-~Tlvp~lLsls~~~~n~~~~VR~~ 972 (1030)
T KOG1967|consen 895 LTNVPK-QVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQTEHL-STLVPYLLSLSSDNDNNMMVVRED 972 (1030)
T ss_pred HhcCCH-HhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccchHHH-hHHHHHHHhcCCCCCcchhHHHHH
Confidence 665443 3332 3467889999999999999999999998776432 2222222 34777777776655432 568899
Q ss_pred HHHHHHHhhC-ChhhhHHHhhccCcHHHHHHHhccCChHHHHHHHHH
Q 017249 214 ATALLEILSS-SEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGA 259 (375)
Q Consensus 214 a~~~L~~l~~-~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~ 259 (375)
|+.+|..|.. .|..+-.-. ....+..|+..|+++...+|+.|+.+
T Consensus 973 ALqcL~aL~~~~P~~~l~~f-r~~Vl~al~k~LdDkKRlVR~eAv~t 1018 (1030)
T KOG1967|consen 973 ALQCLNALTRRLPTKSLLSF-RPLVLRALIKILDDKKRLVRKEAVDT 1018 (1030)
T ss_pred HHHHHHHHhccCCCcccccc-cHHHHHHhhhccCcHHHHHHHHHHHH
Confidence 9999999987 555554444 35788899999999988999998765
No 164
>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D. melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.
Probab=96.03 E-value=0.54 Score=44.13 Aligned_cols=249 Identities=17% Similarity=0.161 Sum_probs=131.9
Q ss_pred HhHHHHHHHHhc-CCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCCC-CHHHHHHHHHHHHHhhccChh
Q 017249 24 QALIEELSDKLI-NGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSP-NLDAIESSLLALLNLAVRNER 101 (375)
Q Consensus 24 ~~~l~~Lv~~L~-s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~~-~~~~~~~a~~~L~~L~~~~~~ 101 (375)
.+.+..++.-|. +.....|..++..|..-+.+. +.+..+..+|.++.+++.+... +..+.-.+..++..+...+..
T Consensus 20 ~Dev~ylld~l~~~~~~s~Rr~sll~La~K~~~~--~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d~~ 97 (361)
T PF07814_consen 20 ADEVEYLLDGLESSSSSSVRRSSLLELASKCADP--QFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSRDGL 97 (361)
T ss_pred HHHHHHHHhhcccCCCccHHHHHHHHHHHHhCCH--HHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHccCCc
Confidence 456778888887 345567888888888888776 8999999999999999999543 332444343344443332444
Q ss_pred hHHHHHHcCChHHHHHhhcCC-ChHHHHHHHHHHHHhhccCCChhHHHhcCChHHHHHHhc---------cCCHHHHHHH
Q 017249 102 NKVKIATAGAIPPLVELLKFQ-NGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILH---------SGSVQGRVDA 171 (375)
Q Consensus 102 ~r~~i~~~g~i~~Lv~lL~~~-~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~l~~L~~lL~---------~~~~~~~~~a 171 (375)
+-..+...+....++.++... ........- .....+-.. .....+..+.+.+. ......+.-|
T Consensus 98 ~~~l~~~~~~~~ll~~Ll~~~~~~~~~~~~~------~~~~~~lsk-~~~~~~~~~~~~~~~~~~~~~~~~~~lsp~~la 170 (361)
T PF07814_consen 98 NMHLLLDRDSLRLLLKLLKVDKSLDVPSDSD------SSRKKNLSK-VQQKSRSLCKELLSSGSSWKSPKPPELSPQTLA 170 (361)
T ss_pred chhhhhchhHHHHHHHHhccccccccccchh------hhhhhhhhH-HHHHHHHHHHHHHhccccccccCCcccccccHH
Confidence 444444555666667777611 000000000 000000000 00111111112210 1112223344
Q ss_pred HHHHHHhc--------------cC-CCCchhhhhcCCcHHHHHHhhh----cc----------cchHHHHHHHHHHHHhh
Q 017249 172 VTALHYLS--------------TC-KENSSPILDATAVPPLINLLKD----CK----------KYSKFAEKATALLEILS 222 (375)
Q Consensus 172 ~~~L~~L~--------------~~-~~~~~~i~~~g~i~~Lv~ll~~----~~----------~~~~~~~~a~~~L~~l~ 222 (375)
+.++-.++ .. +.-+..+.+.|++..++.++.+ .. ........++++|.+.+
T Consensus 171 ll~le~l~~~~~~~~~~~~t~~~~~~~fkeelr~lg~Ld~iv~~l~~~~~~~~~~~~~~~~~~~~l~~l~~cl~ILEs~T 250 (361)
T PF07814_consen 171 LLALESLVRSLREAGDLSETSSRAGEWFKEELRELGGLDHIVDILKDCHSSLSSADAWDDPSLQSLIDLERCLSILESVT 250 (361)
T ss_pred HHHHHHHHHHHhhcccchhhhhhccccchhhhhhHHHHHHHHHHHHHhhhhhhhhhhccccchHHHHHHHHHHHHHHHHH
Confidence 44444442 00 1224555667889999998862 10 01124466888888887
Q ss_pred C-ChhhhHHHhhccC-cHHHHH-HHhc---cCChHHHHHHHHHHHHhcccCcHHHHHHHHHcCChH
Q 017249 223 S-SEEGRIAITNSDG-GILTLV-ETVE---DGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIP 282 (375)
Q Consensus 223 ~-~~~~~~~~~~~~g-~v~~Lv-~lL~---~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~g~v~ 282 (375)
. +.+++..++...+ ....+. .++. .........+++++.|++.++ +..+..+...++..
T Consensus 251 ~~~~~nq~~l~~~~~~~l~~~~~~l~~~~~~~~~~~l~~~lrlllNlTn~n-~~~c~~~~s~~l~~ 315 (361)
T PF07814_consen 251 FLSEENQSYLLSHRSSLLPQLLSTLLRQCDDQVIQLLLLALRLLLNLTNNN-PSACEEFASPKLGQ 315 (361)
T ss_pred hcCccchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHeeeCCCCC-ccchHhhhhhHhcc
Confidence 5 4666666664333 232222 2222 223444678999999999887 45566666554433
No 165
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=95.99 E-value=0.47 Score=43.44 Aligned_cols=193 Identities=17% Similarity=0.164 Sum_probs=110.9
Q ss_pred hHHHHHhhCCCCHHHHHHHHHHHHHhhccChhhHHHHHH--cCChHHHHHhhcCCChHHHHHHHHHHHHhhcc--C-CCh
Q 017249 70 VQPLVLMLVSPNLDAIESSLLALLNLAVRNERNKVKIAT--AGAIPPLVELLKFQNGTLRELAAAAILTLSAA--A-PNK 144 (375)
Q Consensus 70 v~~Lv~~L~~~~~~~~~~a~~~L~~L~~~~~~~r~~i~~--~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~--~-~~~ 144 (375)
+...+..+.......|+.++..+.++..... ....+.+ ...+..+.+.++.+..+-+..|+.++.-++.. . ...
T Consensus 45 L~~~Id~l~eK~~~~Re~aL~~l~~~l~~~~-~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~ 123 (309)
T PF05004_consen 45 LKEAIDLLTEKSSSTREAALEALIRALSSRY-LPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDS 123 (309)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccH
Confidence 4445566666678889999999988876332 2233322 34577888888888766677787877777665 1 222
Q ss_pred hHHHhcCChHHHHHHhccCC--HHHHHHHHHHHHHhccC-CCCchhhhh-cCCcHHHHH--Hhhhcc--------cchHH
Q 017249 145 PAIAASGAAPLLVQILHSGS--VQGRVDAVTALHYLSTC-KENSSPILD-ATAVPPLIN--LLKDCK--------KYSKF 210 (375)
Q Consensus 145 ~~i~~~~~l~~L~~lL~~~~--~~~~~~a~~~L~~L~~~-~~~~~~i~~-~g~i~~Lv~--ll~~~~--------~~~~~ 210 (375)
..+ -....|.|...+.+.+ +.++..++.+|.-++.. ......+.. ...+..+.. ....+. +.+.+
T Consensus 124 ~ei-~~~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l 202 (309)
T PF05004_consen 124 EEI-FEELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSILKSDGNAPVVAAEDDAAL 202 (309)
T ss_pred HHH-HHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCccHH
Confidence 222 2356788888887764 45556666666655432 111111110 012221111 111111 12345
Q ss_pred HHHHHHHHHHhhC-Chhh-hHHHhhccCcHHHHHHHhccCChHHHHHHHHHHHHhccc
Q 017249 211 AEKATALLEILSS-SEEG-RIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQS 266 (375)
Q Consensus 211 ~~~a~~~L~~l~~-~~~~-~~~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~ 266 (375)
.-+|+..-+-|.. .+.. ..... ...++.|..+|.+.+..+|..|-.+|+-|...
T Consensus 203 ~~aAL~aW~lLlt~~~~~~~~~~~--~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~ 258 (309)
T PF05004_consen 203 VAAALSAWALLLTTLPDSKLEDLL--EEALPALSELLDSDDVDVRIAAGEAIALLYEL 258 (309)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHH--HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 5555544443332 2332 22333 35799999999999999999998888777543
No 166
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=95.96 E-value=1.8 Score=44.74 Aligned_cols=219 Identities=12% Similarity=0.132 Sum_probs=127.4
Q ss_pred HHHcCChHHHHHhhcCC-----ChHHHHHHHHHHHHhhccCCChhHHHhcCChHHHHHHhc----cCC----HHHHHHHH
Q 017249 106 IATAGAIPPLVELLKFQ-----NGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILH----SGS----VQGRVDAV 172 (375)
Q Consensus 106 i~~~g~i~~Lv~lL~~~-----~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~l~~L~~lL~----~~~----~~~~~~a~ 172 (375)
+.+.||+..+++++.+. ........+..|...+....|+..+...++++.|++.+. .++ ..+.+..+
T Consensus 113 ~~~~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~Kv~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~LL 192 (802)
T PF13764_consen 113 LAECGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCKVKVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQLL 192 (802)
T ss_pred hhcCCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHhhHHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHHH
Confidence 44678999999999763 345666777777778888889999999999999998874 333 56666666
Q ss_pred HHHHHhccCCC---Cc--hhhhhc--------CCcHHHHHHhhhcc--cchHHHHHHHHHHHHhhCChhhhHHHhhccCc
Q 017249 173 TALHYLSTCKE---NS--SPILDA--------TAVPPLINLLKDCK--KYSKFAEKATALLEILSSSEEGRIAITNSDGG 237 (375)
Q Consensus 173 ~~L~~L~~~~~---~~--~~i~~~--------g~i~~Lv~ll~~~~--~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~ 237 (375)
.++-.|..... .. ...... ..+..+++.+.+.. ....+.....++|-.|+.........+. ..
T Consensus 193 ~IiE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv--~~ 270 (802)
T PF13764_consen 193 EIIESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDALV--EH 270 (802)
T ss_pred HHHHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHHH--HH
Confidence 66665543211 10 010111 12555555555431 2456778889999999987665554442 23
Q ss_pred HHHHHHHh--ccCChHHHHHHHHHHHHhcccC-----cHHHHHHHHHcCChHHHHHHhhhCCHH--------HH------
Q 017249 238 ILTLVETV--EDGSLVSTQHAVGALLSLCQSC-----RDKYRQLILKEGAIPGLLRLTVEGTFE--------AQ------ 296 (375)
Q Consensus 238 v~~Lv~lL--~~~~~~~~~~a~~~L~~l~~~~-----~~~~~~~l~~~g~v~~L~~ll~~~~~~--------~~------ 296 (375)
+...+.+= +.....--..-+.+++.++.+- ....++.+++.|++...+.++...-|. -+
T Consensus 271 F~p~l~f~~~D~~~~~~~~~~Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~YL~~~~P~~~~~~s~eWk~~l~~p 350 (802)
T PF13764_consen 271 FKPYLDFDKFDEEHSPDEQFKLECFCEIAEGIPNNSNGNRLKDKILESGIVQDAIDYLLKHFPSLKNTDSPEWKEFLSRP 350 (802)
T ss_pred HHHhcChhhcccccCchHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhhHHHHHHHHHHHhCcccccCCCHHHHHHhcCC
Confidence 33333321 1111000122344444444321 147889999999999999887754332 22
Q ss_pred --HHHHHHHHHhhcCC--hhhhhhhhhHHHHHHHH
Q 017249 297 --ERARTLLDLLRDTP--QEKRLSSSVLEKIVYDI 327 (375)
Q Consensus 297 --~~A~~~L~~l~~~~--~~~~~~~g~~~~l~~~l 327 (375)
..+..+|+=|+... .+..+..++++ ++-.|
T Consensus 351 sLp~iL~lL~GLa~gh~~tQ~~~~~~~l~-~lH~L 384 (802)
T PF13764_consen 351 SLPYILRLLRGLARGHEPTQLLIAEQLLP-LLHRL 384 (802)
T ss_pred cHHHHHHHHHHHHhcCHHHHHHHHhhHHH-HHHHh
Confidence 23455555555444 23455566664 33444
No 167
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=95.83 E-value=2 Score=44.02 Aligned_cols=305 Identities=13% Similarity=0.102 Sum_probs=180.4
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhccChhhHHHH
Q 017249 27 IEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIESSLLALLNLAVRNERNKVKI 106 (375)
Q Consensus 27 l~~Lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~~~~~~~~~a~~~L~~L~~~~~~~r~~i 106 (375)
.+..-++.+...+.++..++.-+.+++..- +. .....+.++.+.++..+....++..|...+.++..--. ...=
T Consensus 239 r~~~~~lc~d~~~~Vr~~~a~~l~~~a~~~-~~---~~~~s~v~~~~~~L~~DdqdsVr~~a~~~~~~l~~l~~--~~~d 312 (759)
T KOG0211|consen 239 RPIVQSLCQDDTPMVRRAVASNLGNIAKVL-ES---EIVKSEVLPTLIQLLRDDQDSVREAAVESLVSLLDLLD--DDDD 312 (759)
T ss_pred HHHHHhhccccchhhHHHHHhhhHHHHHHH-HH---HHHHhhccHHHhhhhhcchhhHHHHHHHHHHHHHHhcC--Cchh
Confidence 333334445667777877777777777665 22 55667888899999988888888888888877764211 1102
Q ss_pred HHcCChHHHHHhhcCCChHHHHHHHHHHHHhhccCCChhHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccC--CCC
Q 017249 107 ATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTC--KEN 184 (375)
Q Consensus 107 ~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~~L~~~--~~~ 184 (375)
....+.+.+++..+.++..++.......+.|...-.. .......+++...+++....+.+...+.-...++.. .+.
T Consensus 313 ~~~~~~~~l~~~~~d~~~~v~~~~~~~~~~L~~~~~~--~~~~~~~~~~~~~l~~~~~~e~r~a~a~~~~~l~~~l~~~~ 390 (759)
T KOG0211|consen 313 VVKSLTESLVQAVEDGSWRVSYMVADKFSELSSAVGP--SATRTQLVPPVSNLLKDEEWEVRYAIAKKVQKLACYLNASC 390 (759)
T ss_pred hhhhhhHHHHHHhcChhHHHHHHHhhhhhhHHHHhcc--ccCcccchhhHHHHhcchhhhhhHHhhcchHHHhhhcCccc
Confidence 2244577888888888888888887777777654222 223345577888888887777666666666555533 233
Q ss_pred chhhhhcCCcHHHHHHhhhcccchHHHHHHHHHHHHhhC-ChhhhHHHhhccCcHHHHHHHhccCChHHHHHHHHHHHHh
Q 017249 185 SSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSS-SEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSL 263 (375)
Q Consensus 185 ~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~-~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l 263 (375)
...+.....+|.+-.++.+... .++......+.++.. .+ ....+ ....+.++..+++..+.++..-.+.+..+
T Consensus 391 ~~~i~~~~ilp~~~~lv~d~~~--~vr~a~a~~~~~~~p~~~--k~~ti--~~llp~~~~~l~de~~~V~lnli~~ls~~ 464 (759)
T KOG0211|consen 391 YPNIPDSSILPEVQVLVLDNAL--HVRSALASVITGLSPILP--KERTI--SELLPLLIGNLKDEDPIVRLNLIDKLSLL 464 (759)
T ss_pred ccccchhhhhHHHHHHHhcccc--hHHHHHhccccccCccCC--cCcCc--cccChhhhhhcchhhHHHHHhhHHHHHHH
Confidence 4444445556777666666533 333333333333322 12 11111 34556667777777788888877766444
Q ss_pred cccCcHHHHHHHHHcCChHHHHHHhhhCCHHHHHHHHHHHHHhhcCChhhhhhhhhHHHHHHHHhhcCCChHHHHHHHHH
Q 017249 264 CQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDTPQEKRLSSSVLEKIVYDIAARVDGADKAAETAKR 343 (375)
Q Consensus 264 ~~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~~~~~~~g~~~~l~~~l~~~~~g~~~~~~~a~~ 343 (375)
-... +...........+|.+..+..+...+++.+..+-+..++...-..++..-..+-+...+ .|-....++.|..
T Consensus 465 ~~v~-~v~g~~~~s~slLp~i~el~~d~~wRvr~ail~~ip~la~q~~~~~~~~~~~~l~~~~l---~d~v~~Ir~~aa~ 540 (759)
T KOG0211|consen 465 EEVN-DVIGISTVSNSLLPAIVELAEDLLWRVRLAILEYIPQLALQLGVEFFDEKLAELLRTWL---PDHVYSIREAAAR 540 (759)
T ss_pred Hhcc-CcccchhhhhhhhhhhhhhccchhHHHHHHHHHHHHHHHHhhhhHHhhHHHHHHHHhhh---hhhHHHHHHHHHH
Confidence 3322 11222345566777777777777778888777766666554433333333333222223 2333455555555
Q ss_pred HHHHHH
Q 017249 344 LLQDMV 349 (375)
Q Consensus 344 ~l~~l~ 349 (375)
.+..++
T Consensus 541 ~l~~l~ 546 (759)
T KOG0211|consen 541 NLPALV 546 (759)
T ss_pred HhHHHH
Confidence 555554
No 168
>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]
Probab=95.82 E-value=0.74 Score=43.72 Aligned_cols=190 Identities=12% Similarity=0.098 Sum_probs=123.6
Q ss_pred hHHHHHhhCCCCHHHHHHHHHHHHHhhccCh---hhHHHHHHcCChHHHHHhhcCC-------ChHHHHHHHHHHHHhhc
Q 017249 70 VQPLVLMLVSPNLDAIESSLLALLNLAVRNE---RNKVKIATAGAIPPLVELLKFQ-------NGTLRELAAAAILTLSA 139 (375)
Q Consensus 70 v~~Lv~~L~~~~~~~~~~a~~~L~~L~~~~~---~~r~~i~~~g~i~~Lv~lL~~~-------~~~~~~~a~~~L~~Ls~ 139 (375)
...+..++...+.+-+-.|+-.+..++++.. .+|..+++.-|++.+-++|.+. +...+..++.+|...+.
T Consensus 13 ~~~~~~L~~~k~D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~ 92 (698)
T KOG2611|consen 13 LDDCLKLLKGKRDEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCR 92 (698)
T ss_pred hhhHHHHhcccChHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhC
Confidence 3346667777777778889988888887533 3677899998899998888653 23457778888888888
Q ss_pred cCCC--hhHHHhcCChHHHHHHhccC-C------HHHHHHHHHHHHHhccCCCCchhhhhcCCcHHHHHHhhhcccchHH
Q 017249 140 AAPN--KPAIAASGAAPLLVQILHSG-S------VQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDCKKYSKF 210 (375)
Q Consensus 140 ~~~~--~~~i~~~~~l~~L~~lL~~~-~------~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~ 210 (375)
.++- .+.++ ..||.|.+.+... + ..+...+..+|..++..+.....++..|+++.+.++-.-.+.. .-
T Consensus 93 ~pElAsh~~~v--~~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e~G~~~Lia~G~~~~~~Q~y~~~~~~-~d 169 (698)
T KOG2611|consen 93 VPELASHEEMV--SRIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAEAGLMTLIASGGLRVIAQMYELPDGS-HD 169 (698)
T ss_pred ChhhccCHHHH--HhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCCchhHHHHhcCchHHHHHHHhCCCCc-hh
Confidence 8773 23333 4588899988654 2 2368889999999999888888999999999999876644322 11
Q ss_pred HHHHHHHHHHhhCC----hhhhHHHhhccCcHHHHHHHhccCChHHHHHHHHHHHHhcc
Q 017249 211 AEKATALLEILSSS----EEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQ 265 (375)
Q Consensus 211 ~~~a~~~L~~l~~~----~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~ 265 (375)
...++.++.-+... ++.-..+. ..+..+..-+.......+-+.|..|..+-.
T Consensus 170 ~alal~Vlll~~~~~~cw~e~~~~fl---ali~~va~df~~~~~a~KfElc~lL~~vl~ 225 (698)
T KOG2611|consen 170 MALALKVLLLLVSKLDCWSETIERFL---ALIAAVARDFAVLHNALKFELCHLLSAVLS 225 (698)
T ss_pred HHHHHHHHHHHHHhcccCcCCHHHHH---HHHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Confidence 22244444333221 22222222 123333322333345567788888875443
No 169
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=95.75 E-value=0.83 Score=44.87 Aligned_cols=144 Identities=13% Similarity=0.139 Sum_probs=81.0
Q ss_pred hHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhccChhh
Q 017249 23 KQALIEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIESSLLALLNLAVRNERN 102 (375)
Q Consensus 23 ~~~~l~~Lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~~~~~~~~~a~~~L~~L~~~~~~~ 102 (375)
...++..++.++.++|..++..|++.|-.+|.++ +++...+ ++.|+++|.++++.....+=.+|..|...++..
T Consensus 57 ~~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~-~~~v~kv-----aDvL~QlL~tdd~~E~~~v~~sL~~ll~~d~k~ 130 (556)
T PF05918_consen 57 QEEAINAQLDLCEDEDVQIRKQAIKGLPQLCKDN-PEHVSKV-----ADVLVQLLQTDDPVELDAVKNSLMSLLKQDPKG 130 (556)
T ss_dssp HHHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T---T-HHHH-----HHHHHHHTT---HHHHHHHHHHHHHHHHH-HHH
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHhH-HHHHhHH-----HHHHHHHHhcccHHHHHHHHHHHHHHHhcCcHH
Confidence 3456778888888888999999999999999887 6666654 688999999998777777777777777644422
Q ss_pred HHHHHHcCChHHHHHhhc---CCChHHHHHHHHHHHHhhcc-CC--Ch-hHHHhcCChHHHHHHhccCCHHHHHHHHHHH
Q 017249 103 KVKIATAGAIPPLVELLK---FQNGTLRELAAAAILTLSAA-AP--NK-PAIAASGAAPLLVQILHSGSVQGRVDAVTAL 175 (375)
Q Consensus 103 r~~i~~~g~i~~Lv~lL~---~~~~~~~~~a~~~L~~Ls~~-~~--~~-~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L 175 (375)
.+..|+..+. ++++.+|+.++..|..=... .. .. ..-.+.-++..+-++|.+-..+--.....+|
T Consensus 131 --------tL~~lf~~i~~~~~~de~~Re~~lkFl~~kl~~l~~~~~~p~~E~e~~i~~~ikkvL~DVTaeEF~l~m~lL 202 (556)
T PF05918_consen 131 --------TLTGLFSQIESSKSGDEQVRERALKFLREKLKPLKPELLTPQKEMEEFIVDEIKKVLQDVTAEEFELFMSLL 202 (556)
T ss_dssp --------HHHHHHHHHH---HS-HHHHHHHHHHHHHHGGGS-TTTS---HHHHHHHHHHHHHHCTT--HHHHHHHHHHH
T ss_pred --------HHHHHHHHHHhcccCchHHHHHHHHHHHHHHhhCcHHHhhchHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 2334444443 56788899998877552221 11 11 0112222344455556543333344444555
Q ss_pred HHhcc
Q 017249 176 HYLST 180 (375)
Q Consensus 176 ~~L~~ 180 (375)
..+-.
T Consensus 203 ~~lk~ 207 (556)
T PF05918_consen 203 KSLKI 207 (556)
T ss_dssp HTSGG
T ss_pred HhCcc
Confidence 55543
No 170
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=95.72 E-value=0.041 Score=44.98 Aligned_cols=103 Identities=18% Similarity=0.228 Sum_probs=75.2
Q ss_pred HHhcCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhC--CCCHHHHHHHHHHHHHhhccChhhHHHHHHc
Q 017249 32 DKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLV--SPNLDAIESSLLALLNLAVRNERNKVKIATA 109 (375)
Q Consensus 32 ~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~--~~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~ 109 (375)
..+..++.+....++.++..+....++.....+...|.++.++.+.. +.+..++..++++|..-|. +..+|..+.+.
T Consensus 50 ~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~-d~~~r~~I~~~ 128 (157)
T PF11701_consen 50 SLLDEGEMDSLIIAFSALTALFPGPPDVGSELFLSEGFLESLLPLASRKSKDRKVQKAALELLSAACI-DKSCRTFISKN 128 (157)
T ss_dssp HHHCCHHCCHHHHHHHHHHHHCTTTHHHHHHHCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTT-SHHHHHCCHHH
T ss_pred HHHccccchhHHHHHHHHHHHhCCCHHHHHHHHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHc-cHHHHHHHHHH
Confidence 34445556688899999999999883344444556799999999998 7788889999998888776 56666666555
Q ss_pred CChHHHHHhhcCC-ChH-HHHHHHHHHHH
Q 017249 110 GAIPPLVELLKFQ-NGT-LRELAAAAILT 136 (375)
Q Consensus 110 g~i~~Lv~lL~~~-~~~-~~~~a~~~L~~ 136 (375)
+++.|-..++.. ++. ++..|+-.|..
T Consensus 129 -~~~~L~~~~~~~~~~~~ir~~A~v~L~K 156 (157)
T PF11701_consen 129 -YVSWLKELYKNSKDDSEIRVLAAVGLCK 156 (157)
T ss_dssp -CHHHHHHHTTTCC-HH-CHHHHHHHHHH
T ss_pred -HHHHHHHHHccccchHHHHHHHHHHHhc
Confidence 589999999644 555 67777776654
No 171
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=95.72 E-value=1.7 Score=40.19 Aligned_cols=198 Identities=16% Similarity=0.101 Sum_probs=140.6
Q ss_pred HhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCC-CCch-hhhh--cCC-cHHHHHHhhhcccchHHHHHHHHHHHHhh
Q 017249 148 AASGAAPLLVQILHSGSVQGRVDAVTALHYLSTCK-ENSS-PILD--ATA-VPPLINLLKDCKKYSKFAEKATALLEILS 222 (375)
Q Consensus 148 ~~~~~l~~L~~lL~~~~~~~~~~a~~~L~~L~~~~-~~~~-~i~~--~g~-i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~ 222 (375)
...+.+..|+..|..-+-+.+..++....++.... +... ..++ ..- ...+..++... ..+.+...+..+|+...
T Consensus 73 ~~~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy-~~~dial~~g~mlRec~ 151 (335)
T PF08569_consen 73 YRSDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGY-ENPDIALNCGDMLRECI 151 (335)
T ss_dssp HHHTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGG-GSTTTHHHHHHHHHHHT
T ss_pred HHhCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHh-cCccccchHHHHHHHHH
Confidence 34688899999999999999999999999988653 3322 1121 123 44444444443 34456777899999999
Q ss_pred CChhhhHHHhhccCcHHHHHHHhccCChHHHHHHHHHHHHhcccCcHHHHHHHHHc---CChHHHHHHhhhCCHHHHHHH
Q 017249 223 SSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKE---GAIPGLLRLTVEGTFEAQERA 299 (375)
Q Consensus 223 ~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~---g~v~~L~~ll~~~~~~~~~~A 299 (375)
.++...+.++ ....+..+..++..++-.+...|..++..+-..+. .....++.. ........++.+++.-+|..+
T Consensus 152 k~e~l~~~iL-~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk-~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkrqs 229 (335)
T PF08569_consen 152 KHESLAKIIL-YSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHK-KLVAEFLSNNYDRFFQKYNKLLESSNYVTKRQS 229 (335)
T ss_dssp TSHHHHHHHH-TSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSH-HHHHHHHHHTHHHHHHHHHHHCT-SSHHHHHHH
T ss_pred hhHHHHHHHh-CcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccH-HHHHHHHHHHHHHHHHHHHHHccCCCeEeehhh
Confidence 9998888888 57899999999999999999999999998776663 444555543 367778889999999999999
Q ss_pred HHHHHHhhcCChh-----h-hhhhhhHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHH
Q 017249 300 RTLLDLLRDTPQE-----K-RLSSSVLEKIVYDIAARVDGADKAAETAKRLLQDMVQR 351 (375)
Q Consensus 300 ~~~L~~l~~~~~~-----~-~~~~g~~~~l~~~l~~~~~g~~~~~~~a~~~l~~l~~~ 351 (375)
..+|.-+--.+.. + +-...-+.-++..|. +.+.-.+-.|=-+.+.++..
T Consensus 230 lkLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~---d~sk~Iq~eAFhvFKvFVAN 284 (335)
T PF08569_consen 230 LKLLGELLLDRSNFNVMTRYISSPENLKLMMNLLR---DKSKNIQFEAFHVFKVFVAN 284 (335)
T ss_dssp HHHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT----S-HHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhc---CcchhhhHHHHHHHHHHHhC
Confidence 9999988765533 1 223446676776664 56677888888888888654
No 172
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.68 E-value=0.91 Score=43.23 Aligned_cols=148 Identities=12% Similarity=0.011 Sum_probs=88.0
Q ss_pred hccCCHHHHHHHHHHHHHhccC-CCCchhhhhcCCcHHHHHHhhhcccchHHHHHHHHHHHHhhCChhhhHHHhhccCcH
Q 017249 160 LHSGSVQGRVDAVTALHYLSTC-KENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGI 238 (375)
Q Consensus 160 L~~~~~~~~~~a~~~L~~L~~~-~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v 238 (375)
..+++..++..|+..|.|.+.. ++-+..... -.+..++.-|.++.. ..+...+..+|..+...-.+....-.--.+.
T Consensus 267 a~dp~a~~r~~a~r~L~~~as~~P~kv~th~~-~~ldaii~gL~D~~~-~~V~leam~~Lt~v~~~~~~~~l~~~~l~ia 344 (533)
T KOG2032|consen 267 ATDPSAKSRGMACRGLGNTASGAPDKVRTHKT-TQLDAIIRGLYDDLN-EEVQLEAMKCLTMVLEKASNDDLESYLLNIA 344 (533)
T ss_pred ccCchhHHHHHHHHHHHHHhccCcHHHHHhHH-HHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHhhhhcchhhhchhHH
Confidence 4566778899999999999977 433333222 234445544555432 4566667777765554333332211111345
Q ss_pred HHHHHHhccCChHHHHHHHHHHHHhcccCcHHHHHHHHH--cCChHHHHHHhhhCCHHHHHHHHHHHHHhhcC
Q 017249 239 LTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILK--EGAIPGLLRLTVEGTFEAQERARTLLDLLRDT 309 (375)
Q Consensus 239 ~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~--~g~v~~L~~ll~~~~~~~~~~A~~~L~~l~~~ 309 (375)
..+..+.++.++.++..|...+..|+.......+..+.+ .+...+|+-.+.+.+|.+-.++-..++.|.-+
T Consensus 345 lrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllhl~d~~p~va~ACr~~~~~c~p~ 417 (533)
T KOG2032|consen 345 LRLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLHLQDPNPYVARACRSELRTCYPN 417 (533)
T ss_pred HHHHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceeeeCCCChHHHHHHHHHHHhcCch
Confidence 567788888899999988887777665433233444443 23444555556677787777666677666543
No 173
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=95.63 E-value=0.018 Score=32.72 Aligned_cols=30 Identities=23% Similarity=0.307 Sum_probs=25.9
Q ss_pred ChHHHHHHhhhCCHHHHHHHHHHHHHhhcC
Q 017249 280 AIPGLLRLTVEGTFEAQERARTLLDLLRDT 309 (375)
Q Consensus 280 ~v~~L~~ll~~~~~~~~~~A~~~L~~l~~~ 309 (375)
++|.+++++.++++++|..|+.+|..++++
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 368899999999999999999999998764
No 174
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=95.60 E-value=0.59 Score=42.63 Aligned_cols=113 Identities=13% Similarity=0.144 Sum_probs=82.6
Q ss_pred hHHHHHH-HHhcCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhccCh-hh
Q 017249 25 ALIEELS-DKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIESSLLALLNLAVRNE-RN 102 (375)
Q Consensus 25 ~~l~~Lv-~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~~~~~~~~~a~~~L~~L~~~~~-~~ 102 (375)
+.+..|| ..+++.++.++..|+++|+-.+--+ .+... ..++.+...++.++..++..|++++.-+..-.. ..
T Consensus 26 ~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld-~~~a~-----~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~ 99 (298)
T PF12719_consen 26 SLLDSLILPAVQSSDPAVRELALKCLGLCCLLD-KELAK-----EHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDI 99 (298)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhC-hHHHH-----HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchh
Confidence 5666666 6778999999999999999999877 32222 226777888877789999999999998774211 11
Q ss_pred -HHH------HHHcCChHHHHHhhcCCChHHHHHHHHHHHHhhccCCC
Q 017249 103 -KVK------IATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPN 143 (375)
Q Consensus 103 -r~~------i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~ 143 (375)
... ......+..+...+.+.+++++..++..++.|...+..
T Consensus 100 ~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i 147 (298)
T PF12719_consen 100 FDSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRI 147 (298)
T ss_pred ccchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCC
Confidence 111 11234567788888888999999999999998776553
No 175
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=95.54 E-value=0.15 Score=43.29 Aligned_cols=99 Identities=16% Similarity=0.109 Sum_probs=83.4
Q ss_pred HHHHHHHHHHhhCChhhhHHHhhccCcHHHHHHHhcc-----CChHHHHHHHHHHHHhcccCcHHHHHHHHHcCChHHHH
Q 017249 211 AEKATALLEILSSSEEGRIAITNSDGGILTLVETVED-----GSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLL 285 (375)
Q Consensus 211 ~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~-----~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~g~v~~L~ 285 (375)
.-+++.+|..++++|+.+..++ ++.+--.|..+|.. .-+.+|-.++++++.+..++.+.....+....++|.++
T Consensus 117 vcnaL~lLQclaShPetk~~Fl-~AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPLcL 195 (315)
T COG5209 117 VCNALNLLQCLASHPETKKVFL-DAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPLCL 195 (315)
T ss_pred HHHHHHHHHHHhcCcchheeee-ecccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHHHH
Confidence 3568888999999999999988 56666677777742 22567889999999999998888888888999999999
Q ss_pred HHhhhCCHHHHHHHHHHHHHhhcCC
Q 017249 286 RLTVEGTFEAQERARTLLDLLRDTP 310 (375)
Q Consensus 286 ~ll~~~~~~~~~~A~~~L~~l~~~~ 310 (375)
++++.++.-.+.-|+.++..+-.+.
T Consensus 196 rIme~gSElSktvaifI~qkil~dD 220 (315)
T COG5209 196 RIMELGSELSKTVAIFIFQKILGDD 220 (315)
T ss_pred HHHHhhhHHHHHHHHHHHHHHhccc
Confidence 9999999999999999998876555
No 176
>KOG4464 consensus Signaling protein RIC-8/synembryn (regulates neurotransmitter secretion) [Signal transduction mechanisms]
Probab=95.52 E-value=1.4 Score=40.97 Aligned_cols=283 Identities=13% Similarity=0.138 Sum_probs=149.0
Q ss_pred HHHHHHHHhcCCC-HHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhh--C--------CCCHHHHHHHHHHHHH
Q 017249 26 LIEELSDKLINGD-LETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLML--V--------SPNLDAIESSLLALLN 94 (375)
Q Consensus 26 ~l~~Lv~~L~s~~-~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L--~--------~~~~~~~~~a~~~L~~ 94 (375)
.-..+++-|..+- +..+..++..+.-|+.+. ..-..+-....+..|+.+. + ..+.++...++.+|.|
T Consensus 46 L~e~i~~Vle~~~p~t~~v~~LetvrILSRdk--~~L~~~~~~q~~~~ll~~A~ls~~e~sl~~v~d~~vi~EslKCLcN 123 (532)
T KOG4464|consen 46 LGERIFEVLENGEPLTHRVVCLETVRILSRDK--DGLEPLTNDQLCQKLLALAELSSNENSLPTVADMHVIMESLKCLCN 123 (532)
T ss_pred HHHHHHHHHhcCCCchhhhhHHHHHHHHhccc--cccccccchHHHHHHHHHHHhccccCCCCcccchHHHHHHHHHHHH
Confidence 3445566665554 445566667777776655 2211111111233333332 1 1246889999999999
Q ss_pred hhccChhhHHHHHHcCChHHHHHhhcC-----CChHHHHHHHHHHHHhhccC-CChh-HHHhcCChHHHHHHhccC----
Q 017249 95 LAVRNERNKVKIATAGAIPPLVELLKF-----QNGTLRELAAAAILTLSAAA-PNKP-AIAASGAAPLLVQILHSG---- 163 (375)
Q Consensus 95 L~~~~~~~r~~i~~~g~i~~Lv~lL~~-----~~~~~~~~a~~~L~~Ls~~~-~~~~-~i~~~~~l~~L~~lL~~~---- 163 (375)
+...++..|..+.+......+++.+.. ....+...=+..|.-|..-. ..+. .+...+|++.+.+.+.+.
T Consensus 124 lvf~Sq~~q~~~~~~~~~~~ll~~v~~~~er~~~~~~~~~dlrLLflltale~~~Rsql~~~l~Gl~~lt~~led~lgid 203 (532)
T KOG4464|consen 124 LVFHSQRAQDLFLENPLTGKLLQRVLGEFERNFPKDSSIFDLRLLFLLTALETDHRSQLIAELLGLELLTNWLEDKLGID 203 (532)
T ss_pred HHhccHHHHHHHHhhhhHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHhhHHHHHHHHHHhcccHHHHHHhhccccCC
Confidence 999999999999998877777776632 12233444444454444332 2343 445789999999998642
Q ss_pred -----C------HHHHHHHHHHHHHhccCCCCchh---hhh----cCCcHHHHHHhhhccc-----------chHHHHHH
Q 017249 164 -----S------VQGRVDAVTALHYLSTCKENSSP---ILD----ATAVPPLINLLKDCKK-----------YSKFAEKA 214 (375)
Q Consensus 164 -----~------~~~~~~a~~~L~~L~~~~~~~~~---i~~----~g~i~~Lv~ll~~~~~-----------~~~~~~~a 214 (375)
+ ......++.++.|++....-... -.. .++...++..+..... -+.+...+
T Consensus 204 se~n~~~l~pqe~n~a~EaLK~~FNvt~~~~k~~ke~~~~~~r~l~~llr~cl~~vT~~~~~~elhshav~~L~nv~~k~ 283 (532)
T KOG4464|consen 204 SEINVPPLNPQETNRACEALKVFFNVTCDSDKDVKEEHAIQARHLTILLRHCLLIVTLRDSTEELHSHAVNLLDNVPEKC 283 (532)
T ss_pred CCcCCCCCCHHHHHHHHHHHHHHhheeeccccccchhhHHHHHHHHHHHHHHHhhccccchHHHHhhccCCccCCchhhh
Confidence 1 13355667777888755321111 011 1233333333321110 01122333
Q ss_pred HHHHHHhhCChhhhHHHhhccC-cHHHHHHHhcc---------CChHHHHHHHHHHHHhcccCcHHHHHHHHHcCChHHH
Q 017249 215 TALLEILSSSEEGRIAITNSDG-GILTLVETVED---------GSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGL 284 (375)
Q Consensus 215 ~~~L~~l~~~~~~~~~~~~~~g-~v~~Lv~lL~~---------~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~g~v~~L 284 (375)
+.++...-..+...+.+..-.| -.+.+..+|.. .........+.+|..+|..+ .......+..++|+|
T Consensus 284 ~~~~~~~~p~E~~sq~f~~~n~~~mdVi~~lLn~~~~qq~~~ss~~EllsPvlsVL~~car~~--R~~Rkylr~qVLPPL 361 (532)
T KOG4464|consen 284 LDVLAGAKPHECCSQCFEKRNGRNMDVILRLLNFSEKQQEKESSLHELLSPVLSVLTECARSH--RVMRKYLRQQVLPPL 361 (532)
T ss_pred hhcccCCCCcchHHHHHHHhcchhHHHHHHHHHhhHHHHhhhhhhhhhhhhHHHHHHHHHhhh--HHHHHHHHHhcCCch
Confidence 3333211111111111111122 23444444432 12334456677888888776 445555666678877
Q ss_pred HHHhh-----------------hCCHHHHHHHHHHHHHhhcCChh
Q 017249 285 LRLTV-----------------EGTFEAQERARTLLDLLRDTPQE 312 (375)
Q Consensus 285 ~~ll~-----------------~~~~~~~~~A~~~L~~l~~~~~~ 312 (375)
...-. ..+..++.-|+..|..||..+-.
T Consensus 362 rDV~~RPEvg~tLRnkl~Rlmtl~~~~~K~vaAEfLFvLCKesV~ 406 (532)
T KOG4464|consen 362 RDVSQRPEVGQTLRNKLVRLMTLPDSSVKDVAAEFLFVLCKESVN 406 (532)
T ss_pred hhhhcCcchhHHHHHhhHhheeccchhhhhhhHHHHHHHhhcchh
Confidence 65433 34456777788888888776644
No 177
>KOG1566 consensus Conserved protein Mo25 [Function unknown]
Probab=95.50 E-value=1.5 Score=39.48 Aligned_cols=215 Identities=12% Similarity=0.096 Sum_probs=151.3
Q ss_pred ccccccchhhhHHHHHhhHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCChh----hHHHHHhc-CChHHHHHhhCCC
Q 017249 6 NKNKAATDQEEEAWNQRKQALIEELSDKLINGDLETKIEAARDIRKVVKKSSLK----TRSEFAAA-GVVQPLVLMLVSP 80 (375)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~l~~Lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~----~~~~~~~~-g~v~~Lv~~L~~~ 80 (375)
++.+++.+...-...+...+.+..+|..+...+.+.+..+..+..++-... -. +.+++... ..+..|+..-..
T Consensus 60 e~eP~~e~~~qLtqef~~~~~l~~lI~~l~~l~fE~rkD~~~ifnnllr~q-vgtr~~tv~Yl~t~~e~~~~lv~~~~~- 137 (342)
T KOG1566|consen 60 EAEPFAEAVAQLTQEFYNADVLSLLIQHLPKLEFESRKDVLQIFNNLLRRQ-VGTRSPTVEYLETNPEILDNLVKGYEN- 137 (342)
T ss_pred CCCCChHHHHHHHHHHHhCCchHHHHHhhhcccchhhhHHHHHHHHHHHhh-cCCcchHHHHHHhCHHHHHHHHhhhcc-
Confidence 345666677777888999999999999999999999999999999987655 33 33333332 455556555222
Q ss_pred CHHHHHHHHHHHHHhhccChhhHHHHHHcCChHHHHHhhcCCChHHHHHHHHHHHHhhccCCC-hhHHHhcC---C-hHH
Q 017249 81 NLDAIESSLLALLNLAVRNERNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPN-KPAIAASG---A-APL 155 (375)
Q Consensus 81 ~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~-~~~i~~~~---~-l~~ 155 (375)
.+++-..+-..|....+ .+.....+.....+......+..++-++...|..+...+...... ...+.... . .+.
T Consensus 138 ~~~iaL~cg~mlrEcir-he~LakiiL~s~~~~~FF~~vq~p~FdiasdA~~tfK~llt~Hk~~vaEfl~~n~d~ff~e~ 216 (342)
T KOG1566|consen 138 TPEIALTCGNMLRECIR-HEFLAKIILESTNFEKFFLYVQLPNFDIASDAFSTFKELLTRHKSVVAEFLIRNYDNFFAEV 216 (342)
T ss_pred chHHHHHHHHHHHHHHh-hHHHHHHHHcchhHHHHHHHHhccchHHHHHHHHHHHHHHHHhHHHHHHHHHhChhhhHHHH
Confidence 34555555555665555 566667777888899999999888888888888888887654431 11122222 2 344
Q ss_pred HHHHhccCCHHHHHHHHHHHHHhccCCCCchhhh----hcCCcHHHHHHhhhcccchHHHHHHHHHHHHhhCCh
Q 017249 156 LVQILHSGSVQGRVDAVTALHYLSTCKENSSPIL----DATAVPPLINLLKDCKKYSKFAEKATALLEILSSSE 225 (375)
Q Consensus 156 L~~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~----~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~~~ 225 (375)
--.++.+++.-++..+..+|..+-.+..|-..+. +...+..++.+|++.+. .++-.|-.+.+-+..++
T Consensus 217 ~~~Ll~s~Nyvtkrqs~kllg~llldr~N~~~M~kYiss~enLKlmM~llrdksk--niQ~eAFhvFKvfvAnp 288 (342)
T KOG1566|consen 217 YEKLLRSENYVTKRQSLKLLGELLLDRSNSAVMTKYISSPENLKLMMNLLRDKSK--NIQLEAFHVFKVFVANP 288 (342)
T ss_pred HHHHhcccceehHHHHHHhHHHHHhCCCcHHHHHHHhcCHHHHHHHHHHhhCccc--cchHHHHHHHHHHhcCC
Confidence 6678899999999999999999887665544433 34677888889988743 56677888888777654
No 178
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.35 E-value=5.3 Score=43.48 Aligned_cols=276 Identities=17% Similarity=0.124 Sum_probs=143.0
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhccChhhHHH
Q 017249 26 LIEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIESSLLALLNLAVRNERNKVK 105 (375)
Q Consensus 26 ~l~~Lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~~~~~~~~~a~~~L~~L~~~~~~~r~~ 105 (375)
.+|+|.+.=-++++.+|. |...|.+....++....+... ...++.|+.-|.+...++|+.++.+|..|-.+.+. +.
T Consensus 999 LIPrLyRY~yDP~~~Vq~-aM~sIW~~Li~D~k~~vd~y~-neIl~eLL~~lt~kewRVReasclAL~dLl~g~~~--~~ 1074 (1702)
T KOG0915|consen 999 LIPRLYRYQYDPDKKVQD-AMTSIWNALITDSKKVVDEYL-NEILDELLVNLTSKEWRVREASCLALADLLQGRPF--DQ 1074 (1702)
T ss_pred hhHHHhhhccCCcHHHHH-HHHHHHHHhccChHHHHHHHH-HHHHHHHHHhccchhHHHHHHHHHHHHHHHcCCCh--HH
Confidence 344444444467777774 444444444333133333222 35677888888888899999999999999986432 22
Q ss_pred HHH--cCChHHHHHhhcCCChHHHHHH---HHHHHHhhcc-CCC----hhHHHhcCChHHHHHH-hccCCHHHHHHHHHH
Q 017249 106 IAT--AGAIPPLVELLKFQNGTLRELA---AAAILTLSAA-APN----KPAIAASGAAPLLVQI-LHSGSVQGRVDAVTA 174 (375)
Q Consensus 106 i~~--~g~i~~Lv~lL~~~~~~~~~~a---~~~L~~Ls~~-~~~----~~~i~~~~~l~~L~~l-L~~~~~~~~~~a~~~ 174 (375)
+.+ ......+.+++++-.+.+|+.| +.+|..|+.. .+. +..-.-...+|.|++- +.+.-.+++..++.+
T Consensus 1075 ~~e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~l~~iLPfLl~~gims~v~evr~~si~t 1154 (1702)
T KOG0915|consen 1075 VKEKLPELWEAAFRVMDDIKESVREAADKAARALSKLCVRICDVTNGAKGKEALDIILPFLLDEGIMSKVNEVRRFSIGT 1154 (1702)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcccHHHHHHHHHHHHhccCcccchHHHHHHHHHH
Confidence 222 2345566666666666676654 4455555432 111 1111112334444431 113447889999999
Q ss_pred HHHhccCCCC--chhhhhcCCcHHHHHHhhhcccchHHHHHHHHH----------HH-HhhCChhhhH---HHhh-----
Q 017249 175 LHYLSTCKEN--SSPILDATAVPPLINLLKDCKKYSKFAEKATAL----------LE-ILSSSEEGRI---AITN----- 233 (375)
Q Consensus 175 L~~L~~~~~~--~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~----------L~-~l~~~~~~~~---~~~~----- 233 (375)
+..|+..... +..+ ...+|.|++....-. +..+--.++++ ++ +.+.+..--. ..+.
T Consensus 1155 l~dl~Kssg~~lkP~~--~~LIp~ll~~~s~lE-~~vLnYls~r~~~~e~ealDt~R~s~aksspmmeTi~~ci~~iD~~ 1231 (1702)
T KOG0915|consen 1155 LMDLAKSSGKELKPHF--PKLIPLLLNAYSELE-PQVLNYLSLRLINIETEALDTLRASAAKSSPMMETINKCINYIDIS 1231 (1702)
T ss_pred HHHHHHhchhhhcchh--hHHHHHHHHHccccc-hHHHHHHHHhhhhhHHHHHHHHHHhhhcCCcHHHHHHHHHHhhhHH
Confidence 9999865432 2222 245666666655431 11111112221 11 1121111000 0000
Q ss_pred -ccCcHHHHHHHhccC-ChHHHHHHHHHHHHhcccCcHHHHHHHHHcCChHHHHHHhhhCCHHHHHHHHHHHHHhhcCC
Q 017249 234 -SDGGILTLVETVEDG-SLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDTP 310 (375)
Q Consensus 234 -~~g~v~~Lv~lL~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~~~~~A~~~L~~l~~~~ 310 (375)
-...+|.+.++++.+ .-..+..++..+.-|+..-..+... .....+..+...+++.++.+++..+.+...+...+
T Consensus 1232 vLeelip~l~el~R~sVgl~Tkvg~A~fI~~L~~r~~~emtP--~sgKll~al~~g~~dRNesv~kafAsAmG~L~k~S 1308 (1702)
T KOG0915|consen 1232 VLEELIPRLTELVRGSVGLGTKVGCASFISLLVQRLGSEMTP--YSGKLLRALFPGAKDRNESVRKAFASAMGYLAKFS 1308 (1702)
T ss_pred HHHHHHHHHHHHHhccCCCCcchhHHHHHHHHHHHhccccCc--chhHHHHHHhhccccccHHHHHHHHHHHHHHHhcC
Confidence 124566666666542 2334445555555544321111000 11225566667777889999999888888887665
No 179
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=95.31 E-value=0.086 Score=49.75 Aligned_cols=156 Identities=15% Similarity=0.114 Sum_probs=89.0
Q ss_pred hHHHHHHhccCCHHHHHHHHHHHHHhccC----CCCchhhhh---cCCcHHHHHHhhh-cccchHHHHHHHHHHHHhhCC
Q 017249 153 APLLVQILHSGSVQGRVDAVTALHYLSTC----KENSSPILD---ATAVPPLINLLKD-CKKYSKFAEKATALLEILSSS 224 (375)
Q Consensus 153 l~~L~~lL~~~~~~~~~~a~~~L~~L~~~----~~~~~~i~~---~g~i~~Lv~ll~~-~~~~~~~~~~a~~~L~~l~~~ 224 (375)
...++..|.+.....+..++|++.|++.. -++.+...+ .-.+..+...... +-...++..++.+.|+|+...
T Consensus 435 a~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg~ll~~~~~~A~~~~Ad~dkV~~navraLgnllQv 514 (728)
T KOG4535|consen 435 ANAILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSGLLLLKMLRSAIEASADKDKVKSNAVRALGNLLQF 514 (728)
T ss_pred HHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHhhHHHH
Confidence 34444455555567788899999988742 122111111 1122233332222 222346788899999988753
Q ss_pred hh-----hhHHHhhccCcHHHHH-HHhccCChHHHHHHHHHHHHhcccCcHHHHHHHHHcCChHHHHHHhh-hCCHHHHH
Q 017249 225 EE-----GRIAITNSDGGILTLV-ETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTV-EGTFEAQE 297 (375)
Q Consensus 225 ~~-----~~~~~~~~~g~v~~Lv-~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~g~v~~L~~ll~-~~~~~~~~ 297 (375)
-. .-..+. .+.+..++ ...-.+..+++-+||.++.||..+..-.....=+..-+.+.|..++. ..+..+|.
T Consensus 515 lq~i~~~~~~e~~--~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a~~lq~~~wA~~~F~~L~~Lv~~~~NFKVRi 592 (728)
T KOG4535|consen 515 LQPIEKPTFAEII--EESIQALISTVLTEAAMKVRWNACYAMGNLFKNPALPLQTAPWASQAFNALTSLVTSCKNFKVRI 592 (728)
T ss_pred HHHhhhccHHHHH--HHHHHhcccceecccccccchHHHHHHHHhhcCccccccCCCchHHHHHHHHHHHHHhccceEee
Confidence 22 111111 12222222 22234567899999999999988753111222233446788888776 46899999
Q ss_pred HHHHHHHHhhcCC
Q 017249 298 RARTLLDLLRDTP 310 (375)
Q Consensus 298 ~A~~~L~~l~~~~ 310 (375)
.|+.+|..-....
T Consensus 593 ~AA~aL~vp~~re 605 (728)
T KOG4535|consen 593 RAAAALSVPGKRE 605 (728)
T ss_pred hhhhhhcCCCCcc
Confidence 9999988765544
No 180
>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]
Probab=95.25 E-value=1.4 Score=42.56 Aligned_cols=157 Identities=20% Similarity=0.199 Sum_probs=114.7
Q ss_pred ChHHHHHHhccCCHHHHHHHHHHHHHhccCCCCchhhhhcCCcHHHHHHhhhccc--chHHHHHHHHHHHHhhCChhhhH
Q 017249 152 AAPLLVQILHSGSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDCKK--YSKFAEKATALLEILSSSEEGRI 229 (375)
Q Consensus 152 ~l~~L~~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~~~--~~~~~~~a~~~L~~l~~~~~~~~ 229 (375)
....+.+++.+++...+..+...|..++.+..-...++...++..|.+++.++.. ...+...+++++..+-.+.-..-
T Consensus 84 ~a~~i~e~l~~~~~~~~~~a~k~l~sls~d~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgvvsW 163 (713)
T KOG2999|consen 84 YAKRIMEILTEGNNISKMEALKELDSLSLDPTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGVVSW 163 (713)
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhceeee
Confidence 4567888999999888888999999998888888888899999999999998754 33455555666655543322111
Q ss_pred HHhhccCcHHHHHHHhc--cCChHHHHHHHHHHHHhcccCcHHHHHHHHHcCChHHHHHHhhhCCHHHHHHHHHHHHHhh
Q 017249 230 AITNSDGGILTLVETVE--DGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLR 307 (375)
Q Consensus 230 ~~~~~~g~v~~Lv~lL~--~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~~~~~A~~~L~~l~ 307 (375)
..+ ...+|.....+.. ..+..+-..|+..|-++..++ +.....+.+.--++.|+..+...+..++.+|..++..+-
T Consensus 164 ~~~-~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s-~~~~~~v~eev~i~~li~hlq~~n~~i~~~aial~nal~ 241 (713)
T KOG2999|consen 164 ESV-SNDFVVSMASYVNAKREDANTLLAALQMLESLVLGS-DTLRQLVAEEVPIETLIRHLQVSNQRIQTCAIALLNALF 241 (713)
T ss_pred eec-ccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCC-hHHHHHHHhcCcHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence 122 2344555555542 233456678999999988887 356777778889999999999999999999999888876
Q ss_pred cCC
Q 017249 308 DTP 310 (375)
Q Consensus 308 ~~~ 310 (375)
...
T Consensus 242 ~~a 244 (713)
T KOG2999|consen 242 RKA 244 (713)
T ss_pred hhC
Confidence 544
No 181
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=95.23 E-value=1 Score=42.47 Aligned_cols=95 Identities=11% Similarity=0.152 Sum_probs=78.2
Q ss_pred CChHHHHHhhCCC---CHHHHHHHHHHHHHhhccChhhHHHHHHcCChHHHHHhhc-CC---ChHHHHHHHHHHHHhhcc
Q 017249 68 GVVQPLVLMLVSP---NLDAIESSLLALLNLAVRNERNKVKIATAGAIPPLVELLK-FQ---NGTLRELAAAAILTLSAA 140 (375)
Q Consensus 68 g~v~~Lv~~L~~~---~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~-~~---~~~~~~~a~~~L~~Ls~~ 140 (375)
.....|...++.. .+.+--.|+..+..+...+|..-..+.+.|.++.++..+. .. +.++....-.++..||.+
T Consensus 106 ~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~~L~~i~~~~i~~s~e~l~~lP~~l~AicLN 185 (379)
T PF06025_consen 106 SLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAGLIDAFLDAITAKGILPSSEVLTSLPNVLSAICLN 185 (379)
T ss_pred hHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHcCChHHHHHHHhccCCCCcHHHHHHHHHHHhHHhcC
Confidence 3455555566554 4788889999999999999999999999999999999887 43 567777777889999999
Q ss_pred CCChhHHHhcCChHHHHHHhcc
Q 017249 141 APNKPAIAASGAAPLLVQILHS 162 (375)
Q Consensus 141 ~~~~~~i~~~~~l~~L~~lL~~ 162 (375)
..+...+.+.+.++.+++++.+
T Consensus 186 ~~Gl~~~~~~~~l~~~f~if~s 207 (379)
T PF06025_consen 186 NRGLEKVKSSNPLDKLFEIFTS 207 (379)
T ss_pred HHHHHHHHhcChHHHHHHHhCC
Confidence 9999999888999999888754
No 182
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=95.11 E-value=0.29 Score=43.12 Aligned_cols=96 Identities=13% Similarity=0.166 Sum_probs=79.8
Q ss_pred HHHHHHHHHHHhhccChhhHHHHHHcCChHHHHHhhcC-CChHHHHHHHHHHHHhhcc-CCChhHHHhcCChHHHHHHhc
Q 017249 84 AIESSLLALLNLAVRNERNKVKIATAGAIPPLVELLKF-QNGTLRELAAAAILTLSAA-APNKPAIAASGAAPLLVQILH 161 (375)
Q Consensus 84 ~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~-~~~~~~~~a~~~L~~Ls~~-~~~~~~i~~~~~l~~L~~lL~ 161 (375)
....|++.|.-++--+|+.|..+.....+..|+.+|+. ..+.++..++.+|..+..+ +.|...+...+|+..++.+++
T Consensus 107 li~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~llk 186 (257)
T PF08045_consen 107 LIALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSLLK 186 (257)
T ss_pred HHHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHHHc
Confidence 45668899999998899999999999999999999954 5788898999988887665 458888889999999999998
Q ss_pred cC--CHHHHHHHHHHHHHhc
Q 017249 162 SG--SVQGRVDAVTALHYLS 179 (375)
Q Consensus 162 ~~--~~~~~~~a~~~L~~L~ 179 (375)
+. +.+++-.++..|+-..
T Consensus 187 ~~~~~~~~r~K~~EFL~fyl 206 (257)
T PF08045_consen 187 SKSTDRELRLKCIEFLYFYL 206 (257)
T ss_pred cccccHHHhHHHHHHHHHHH
Confidence 77 4677777887776543
No 183
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=94.94 E-value=0.073 Score=43.49 Aligned_cols=147 Identities=18% Similarity=0.144 Sum_probs=95.6
Q ss_pred ChHHHHHhhcC--CChHHHHHHHHHHHHhhccCCChhHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccC-CCCchh
Q 017249 111 AIPPLVELLKF--QNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTC-KENSSP 187 (375)
Q Consensus 111 ~i~~Lv~lL~~--~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~~L~~~-~~~~~~ 187 (375)
.+..++..|.. ..+++|..+.-++..+- +..+.. ....+-+.+-..+..++.+....+..++..|-.. ++....
T Consensus 4 ~l~~lL~~L~~~~~~~~~r~~a~v~l~k~l--~~~~~~-~~~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~ 80 (157)
T PF11701_consen 4 ELDTLLTSLDMLRQPEEVRSHALVILSKLL--DAAREE-FKEKISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGSE 80 (157)
T ss_dssp CCCHHHHHHHCTTTSCCHHHHHHHHHHHHH--HHHHHH-HHHHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHHH
T ss_pred HHHHHHHHhcccCCCHhHHHHHHHHHHHHH--HHhHHH-HHHHHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHHH
Confidence 34556666654 47888988888888873 111111 1222233444444444444566677777777654 344444
Q ss_pred hh-hcCCcHHHHHHhhhcccchHHHHHHHHHHHHhhCChhhhHHHhhccCcHHHHHHHhc-cCChH-HHHHHHHHHHH
Q 017249 188 IL-DATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVE-DGSLV-STQHAVGALLS 262 (375)
Q Consensus 188 i~-~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~Lv~lL~-~~~~~-~~~~a~~~L~~ 262 (375)
+. ..|.++.++.++.+...+..+...++.+|..=|.+...|..+. ..+++.|-..++ +.++. ++..|+-+|+.
T Consensus 81 l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~d~~~r~~I~--~~~~~~L~~~~~~~~~~~~ir~~A~v~L~K 156 (157)
T PF11701_consen 81 LFLSEGFLESLLPLASRKSKDRKVQKAALELLSAACIDKSCRTFIS--KNYVSWLKELYKNSKDDSEIRVLAAVGLCK 156 (157)
T ss_dssp HCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTTSHHHHHCCH--HHCHHHHHHHTTTCC-HH-CHHHHHHHHHH
T ss_pred HHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHccHHHHHHHH--HHHHHHHHHHHccccchHHHHHHHHHHHhc
Confidence 44 5788999999998444466788888999987778888888777 479999999996 44455 78888877764
No 184
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=94.84 E-value=0.066 Score=45.05 Aligned_cols=82 Identities=15% Similarity=0.241 Sum_probs=65.7
Q ss_pred CCchhhhhcCCcHHHHHHhhhcc-------cchHHHHHHHHHHHHhhCChhhhHHHhhccCcHHHHHHHhccCChHHHHH
Q 017249 183 ENSSPILDATAVPPLINLLKDCK-------KYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQH 255 (375)
Q Consensus 183 ~~~~~i~~~g~i~~Lv~ll~~~~-------~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~ 255 (375)
.....+++.||+..|+++|..-. .+......++.+|..+..+..+...++...+++..|+..|.+.+..++..
T Consensus 98 ~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~n~~~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~ 177 (187)
T PF06371_consen 98 SWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALMNTKYGLEAVLSHPDSVNLIALSLDSPNIKTRKL 177 (187)
T ss_dssp HHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHTSSHHHHHHHHCSSSHHHHHHHT--TTSHHHHHH
T ss_pred hHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHccHHHHHHHHcCcHHHHHHHHHHCCCCHHHHHH
Confidence 34566777888888888876431 22356677899999999999999999988899999999999999999999
Q ss_pred HHHHHHHhc
Q 017249 256 AVGALLSLC 264 (375)
Q Consensus 256 a~~~L~~l~ 264 (375)
++.+|..+|
T Consensus 178 ~leiL~~lc 186 (187)
T PF06371_consen 178 ALEILAALC 186 (187)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999999887
No 185
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=94.71 E-value=0.088 Score=29.86 Aligned_cols=30 Identities=20% Similarity=0.192 Sum_probs=26.0
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhh
Q 017249 26 LIEELSDKLINGDLETKIEAARDIRKVVKK 55 (375)
Q Consensus 26 ~l~~Lv~~L~s~~~~~~~~a~~~l~~l~~~ 55 (375)
.+|.+++.+++++++++..|+.+|..+++.
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 378899999999999999999999998763
No 186
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.68 E-value=0.93 Score=46.07 Aligned_cols=218 Identities=14% Similarity=0.096 Sum_probs=128.9
Q ss_pred HHhhCCCCHHHHHHHHHHHHHhhccChhhHHHHHHcCChHHHHHhhcCCChHHHHHHHHHHHHhhccCCChhHHHhcCCh
Q 017249 74 VLMLVSPNLDAIESSLLALLNLAVRNERNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAA 153 (375)
Q Consensus 74 v~~L~~~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~l 153 (375)
+..+.++-+.++-.++..|+.+... .+-...+...+++..++..|++.++.+--.|+..+..|+.- -....+
T Consensus 733 i~sl~d~qvpik~~gL~~l~~l~e~-r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcev-------y~e~il 804 (982)
T KOG4653|consen 733 ISSLHDDQVPIKGYGLQMLRHLIEK-RKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEV-------YPEDIL 804 (982)
T ss_pred HHHhcCCcccchHHHHHHHHHHHHh-cchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHh-------cchhhH
Confidence 3444555567888999999999973 35556666788999999999999998888888877777653 224556
Q ss_pred HHHHHH-hccC---CHHHHHHHHHHHHHhccC-CCCchhhhhcCCcHHHHHHhhhcccchHHHHHHHHHHHHhhCChhhh
Q 017249 154 PLLVQI-LHSG---SVQGRVDAVTALHYLSTC-KENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGR 228 (375)
Q Consensus 154 ~~L~~l-L~~~---~~~~~~~a~~~L~~L~~~-~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~~~~~~ 228 (375)
|.|.+. .... .++.+-..-.++.++... .+...... .-.+...++.++++ +...+..+++.++++|.-...+
T Consensus 805 ~dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~-~~Li~tfl~gvrep--d~~~RaSS~a~lg~Lcq~~a~~ 881 (982)
T KOG4653|consen 805 PDLSEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYK-AVLINTFLSGVREP--DHEFRASSLANLGQLCQLLAFQ 881 (982)
T ss_pred HHHHHHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHH-HHHHHHHHHhcCCc--hHHHHHhHHHHHHHHHHHHhhh
Confidence 666663 2211 122233333555555432 22222211 13444555555543 4456788889999988543321
Q ss_pred H-HHhhccCcHHHHHHHhc-cCChHHHHHHHHHHHHhcccCcHHHHHHHH--HcCChHHHHHHhhh-CCHHHHHHHHHHH
Q 017249 229 I-AITNSDGGILTLVETVE-DGSLVSTQHAVGALLSLCQSCRDKYRQLIL--KEGAIPGLLRLTVE-GTFEAQERARTLL 303 (375)
Q Consensus 229 ~-~~~~~~g~v~~Lv~lL~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~--~~g~v~~L~~ll~~-~~~~~~~~A~~~L 303 (375)
- ..+ ...+..++.+.. +++..+|..|+..+..+-.+...+.-..+. -.+....+..+... .+..++.+|..++
T Consensus 882 vsd~~--~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpilr~~l~Dl~~tl~~~vr~~~dd~~klhaql~l 959 (982)
T KOG4653|consen 882 VSDFF--HEVLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLPILRLLLIDLDETLLSYVRQHDDDGLKLHAQLCL 959 (982)
T ss_pred hhHHH--HHHHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHH
Confidence 1 111 235555555654 567889999999999887765433222221 12444455555553 3444555555544
Q ss_pred H
Q 017249 304 D 304 (375)
Q Consensus 304 ~ 304 (375)
.
T Consensus 960 e 960 (982)
T KOG4653|consen 960 E 960 (982)
T ss_pred H
Confidence 4
No 187
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=94.65 E-value=0.84 Score=46.63 Aligned_cols=197 Identities=14% Similarity=0.142 Sum_probs=126.5
Q ss_pred HHHHhhccChhhHHHHHHcCChHHHHHhhcCC-ChHHHHHHHHHHHHhhccCCChhHHHhcCChH--HHHHHhccCCH-H
Q 017249 91 ALLNLAVRNERNKVKIATAGAIPPLVELLKFQ-NGTLRELAAAAILTLSAAAPNKPAIAASGAAP--LLVQILHSGSV-Q 166 (375)
Q Consensus 91 ~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~-~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~l~--~L~~lL~~~~~-~ 166 (375)
+|.+.+..++++...+.+.|++..+...++.. +.+.+..++..+.+++...+.+........+. .+-.++..-+. +
T Consensus 494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f~~~~~~~~il~~l~n~~~~~~~~~~~~~~~~~~~~~f~~~~~~w~~~e 573 (699)
T KOG3665|consen 494 ALWNITDENPETCKEFLDNGGMKLLFKCLESFDNEELHRKILGLLGNLAEVLELRELLMIFEFIDFSVFKVLLNKWDSIE 573 (699)
T ss_pred HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhccchhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcchhh
Confidence 78899999999999999999999999999865 67889999999999998776554443222222 34345555554 7
Q ss_pred HHHHHHHHHHHhccCCCCchhhhhcCCcHHHHHHhhhcccchHHHHHHHHHHHHhhCChhhhHHHhhccCcHHH-HHHHh
Q 017249 167 GRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGILT-LVETV 245 (375)
Q Consensus 167 ~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~-Lv~lL 245 (375)
.-+.++..|..+..+.+. -...+.-+. +.+.-.. ++...+........ ...+.. +..++
T Consensus 574 rsY~~~siLa~ll~~~~~---~~~~~~r~~-------------~~~~l~e---~i~~~~~~~~~~~~-~~~f~~~~~~il 633 (699)
T KOG3665|consen 574 RSYNAASILALLLSDSEK---TTECVFRNS-------------VNELLVE---AISRWLTSEIRVIN-DRSFFPRILRIL 633 (699)
T ss_pred HHHHHHHHHHHHHhCCCc---CccccchHH-------------HHHHHHH---HhhccCccceeehh-hhhcchhHHHHh
Confidence 788899998888765433 111111111 1111111 22222222221121 122222 44444
Q ss_pred c-cCChHHHHHHHHHHHHhcccCcHHHHHHHHHcCChHHHHHHhh-hCCHHHHHHHHHHHHHhhc
Q 017249 246 E-DGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTV-EGTFEAQERARTLLDLLRD 308 (375)
Q Consensus 246 ~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~g~v~~L~~ll~-~~~~~~~~~A~~~L~~l~~ 308 (375)
. +..+..+..|++++.+++... ++..+.+.+.|+++.+..... .....+++.+...+..+..
T Consensus 634 ~~s~~~g~~lWal~ti~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 697 (699)
T KOG3665|consen 634 RLSKSDGSQLWALWTIKNVLEQN-KEYCKLVRESNGFELIENIRVLSEVVDVKEEAVLVIESCEN 697 (699)
T ss_pred cccCCCchHHHHHHHHHHHHHcC-hhhhhhhHhccchhhhhhcchhHHHHHHHHHHHHHhhcccc
Confidence 3 345778899999999999987 467888888999998887433 3367777777777665543
No 188
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=94.52 E-value=0.35 Score=46.41 Aligned_cols=112 Identities=16% Similarity=0.155 Sum_probs=81.4
Q ss_pred ChHHHHHhhCCCCHHHHHHHHHHHHHhhccChhh--------HHHHHHc----CChHHHHHhhcCCChHHHHHHHHHHHH
Q 017249 69 VVQPLVLMLVSPNLDAIESSLLALLNLAVRNERN--------KVKIATA----GAIPPLVELLKFQNGTLRELAAAAILT 136 (375)
Q Consensus 69 ~v~~Lv~~L~~~~~~~~~~a~~~L~~L~~~~~~~--------r~~i~~~----g~i~~Lv~lL~~~~~~~~~~a~~~L~~ 136 (375)
.+..|+++|.+ +++...+++.+.-+..+.+.. -..+++. ..+|.|++-.+..+.+.+..-+.+|..
T Consensus 272 ~~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~~~k~~yL~ALs~ 349 (415)
T PF12460_consen 272 LLDKLLELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEADDEIKSNYLTALSH 349 (415)
T ss_pred HHHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcChhhHHHHHHHHHH
Confidence 35667777766 577888999999888863332 2233332 346777777777777788888889999
Q ss_pred hhccCCChhHHH-hcCChHHHHHHhccCCHHHHHHHHHHHHHhccCC
Q 017249 137 LSAAAPNKPAIA-ASGAAPLLVQILHSGSVQGRVDAVTALHYLSTCK 182 (375)
Q Consensus 137 Ls~~~~~~~~i~-~~~~l~~L~~lL~~~~~~~~~~a~~~L~~L~~~~ 182 (375)
+..+-+...... -...+|.|++.|..++..++..++.+|..+....
T Consensus 350 ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~ 396 (415)
T PF12460_consen 350 LLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEA 396 (415)
T ss_pred HHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcC
Confidence 888755333332 2468899999999999999999999999887554
No 189
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=94.52 E-value=1.3 Score=39.49 Aligned_cols=222 Identities=15% Similarity=0.037 Sum_probs=127.4
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHhhccChhhHHHHHHcCChHHHHHhhcCC--ChHHHHHHHHHHHHhhccCCChhHHH
Q 017249 71 QPLVLMLVSPNLDAIESSLLALLNLAVRNERNKVKIATAGAIPPLVELLKFQ--NGTLRELAAAAILTLSAAAPNKPAIA 148 (375)
Q Consensus 71 ~~Lv~~L~~~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~--~~~~~~~a~~~L~~Ls~~~~~~~~i~ 148 (375)
..|=+.|.+++..+|..|+..|......-+... ....-+..|+..+.+. +......++..+..|..........
T Consensus 2 ~~Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~---L~~~ev~~L~~F~~~rl~D~~~~~~~l~gl~~L~~~~~~~~~~- 77 (262)
T PF14500_consen 2 QSLGEYLTSEDPIIRAKALELLSEVLERLPPDF---LSRQEVQVLLDFFCSRLDDHACVQPALKGLLALVKMKNFSPES- 77 (262)
T ss_pred cchhhhhCCCCHHHHHHHHHHHHHHHHhCCHhh---ccHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHhCcCCChhh-
Confidence 345577889999999999999998776544221 2222245666655432 5555556677777776433311111
Q ss_pred hcCChHHHHHHhcc--CCHHHHHHHHHHHHHhccCCC-CchhhhhcCCcHHHHHHhhhcccchHHHHHHHHHHHHhhCCh
Q 017249 149 ASGAAPLLVQILHS--GSVQGRVDAVTALHYLSTCKE-NSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSE 225 (375)
Q Consensus 149 ~~~~l~~L~~lL~~--~~~~~~~~a~~~L~~L~~~~~-~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~~~ 225 (375)
....+..+.+-.+. .....+..+...+..|..... .... ...+.+..+++.+....++ .-...+..++..+...-
T Consensus 78 ~~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~-~~~~fv~~~i~~~~gEkDP-RnLl~~F~l~~~i~~~~ 155 (262)
T PF14500_consen 78 AVKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQS-MGDDFVYGFIQLIDGEKDP-RNLLLSFKLLKVILQEF 155 (262)
T ss_pred HHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHh-chhHHHHHHHHHhccCCCH-HHHHHHHHHHHHHHHhc
Confidence 11223333332221 234567788888888765421 1111 2245777888888777644 33444666666555432
Q ss_pred hhhHHHhhccCcHHHHHHHhc---------cC-C--hHHHHHHHHHHHHhcccCcHHHHHHHHHcCChHHHHHHhhhCCH
Q 017249 226 EGRIAITNSDGGILTLVETVE---------DG-S--LVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTF 293 (375)
Q Consensus 226 ~~~~~~~~~~g~v~~Lv~lL~---------~~-~--~~~~~~a~~~L~~l~~~~~~~~~~~l~~~g~v~~L~~ll~~~~~ 293 (375)
+. ....+.+...+. .+ + .-.++.-...|.+.-... + ....-.+|.|++-+.++++
T Consensus 156 ~~-------~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~-~-----~fa~~~~p~LleKL~s~~~ 222 (262)
T PF14500_consen 156 DI-------SEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSST-P-----LFAPFAFPLLLEKLDSTSP 222 (262)
T ss_pred cc-------chhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCc-H-----hhHHHHHHHHHHHHcCCCc
Confidence 21 233344444431 11 1 224455555555543333 2 2456689999999999999
Q ss_pred HHHHHHHHHHHHhhcCCh
Q 017249 294 EAQERARTLLDLLRDTPQ 311 (375)
Q Consensus 294 ~~~~~A~~~L~~l~~~~~ 311 (375)
.++..+..+|..|...-.
T Consensus 223 ~~K~D~L~tL~~c~~~y~ 240 (262)
T PF14500_consen 223 SVKLDSLQTLKACIENYG 240 (262)
T ss_pred HHHHHHHHHHHHHHHHCC
Confidence 999999999988876553
No 190
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=94.31 E-value=0.23 Score=50.50 Aligned_cols=154 Identities=16% Similarity=0.090 Sum_probs=111.3
Q ss_pred hHHHHHhhHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCChhhHHHHHh--cCChHHHHHhhCCCCHHHHHHHHHHHH
Q 017249 16 EEAWNQRKQALIEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAA--AGVVQPLVLMLVSPNLDAIESSLLALL 93 (375)
Q Consensus 16 ~~~~~~~~~~~l~~Lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~--~g~v~~Lv~~L~~~~~~~~~~a~~~L~ 93 (375)
=.++++. .+.+|.|++...+.+-..|-.=+..|.+...+- |. ..+.. ....|.|++.|+-+|..++..+.+++.
T Consensus 859 LykQRfF-~~ivP~l~~~~~t~~~~~K~~yl~~LshVl~~v-P~--~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~ 934 (1030)
T KOG1967|consen 859 LYKQRFF-CDIVPILVSKFETAPGSQKHNYLEALSHVLTNV-PK--QVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIP 934 (1030)
T ss_pred HHHHHHH-HhhHHHHHHHhccCCccchhHHHHHHHHHHhcC-CH--HhhccchhhHHHHHHHhcCCCccchhhhHhhhhh
Confidence 3344433 456888888888666666777778888887766 32 32322 257888999999999999999999998
Q ss_pred HhhccChhhHHHHHHcCChHHHHHhhcCCC---hHHHHHHHHHHHHhhcc-CCChhHHHhcCChHHHHHHhccCCHHHHH
Q 017249 94 NLAVRNERNKVKIATAGAIPPLVELLKFQN---GTLRELAAAAILTLSAA-APNKPAIAASGAAPLLVQILHSGSVQGRV 169 (375)
Q Consensus 94 ~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~---~~~~~~a~~~L~~Ls~~-~~~~~~i~~~~~l~~L~~lL~~~~~~~~~ 169 (375)
-+....+..... .-...+|.++.+=.+++ -.+|+.|+.+|..|... +...-.-....++..|.+.|+++...++.
T Consensus 935 ~~l~~~~tL~t~-~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~ 1013 (1030)
T KOG1967|consen 935 MLLTESETLQTE-HLSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRK 1013 (1030)
T ss_pred HHHHhccccchH-HHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHH
Confidence 887655433322 12346788888766654 67899999999999984 43333334677899999999999888888
Q ss_pred HHHHH
Q 017249 170 DAVTA 174 (375)
Q Consensus 170 ~a~~~ 174 (375)
.|..+
T Consensus 1014 eAv~t 1018 (1030)
T KOG1967|consen 1014 EAVDT 1018 (1030)
T ss_pred HHHHH
Confidence 88876
No 191
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=94.06 E-value=1.4 Score=41.67 Aligned_cols=195 Identities=11% Similarity=0.076 Sum_probs=118.2
Q ss_pred HHHHHHHHhhccChhhHHHHHHcCChHHHHHhhcCCChHHHHHHHHHHHHhhccCCChhHHHhcCChHHHHH--HhccCC
Q 017249 87 SSLLALLNLAVRNERNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQ--ILHSGS 164 (375)
Q Consensus 87 ~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~l~~L~~--lL~~~~ 164 (375)
.|++.|-.+....+..-..+...+|+..++..+...-....+. ........... .......+. .+....
T Consensus 3 ~av~~ld~~~~~~~~a~~~f~~~~G~~~li~rl~~Ev~~~~~~-----~~~~~~~~~~~----~~~~~~~~~~~~i~~~r 73 (379)
T PF06025_consen 3 RAVRFLDTFIDSSPDAFAAFRNLNGLDILIDRLQYEVDFALEE-----NKNEEAGSGIP----PEYKESSVDGYSISYQR 73 (379)
T ss_pred HHHHHHHHHHhccHHHHHHHHhCCCHHHHHHHHHHHHHHHHhc-----ccccCCCCCCC----CCcccccccccccCHHH
Confidence 4677777777767777888899999999999885432222211 00111111000 000000000 011111
Q ss_pred HHHHHHHHHHHHHhcc-CC---CCchhhhh-cCCcHHHHHHhhhcc-cchHHHHHHHHHHHHhhCChhhhHHHhhccCcH
Q 017249 165 VQGRVDAVTALHYLST-CK---ENSSPILD-ATAVPPLINLLKDCK-KYSKFAEKATALLEILSSSEEGRIAITNSDGGI 238 (375)
Q Consensus 165 ~~~~~~a~~~L~~L~~-~~---~~~~~i~~-~g~i~~Lv~ll~~~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v 238 (375)
....+..+..+..+.. +. +..+.+.+ ...+..|..++.+.. ....+.-.|..++..+..++...-.++.+.|.+
T Consensus 74 ~~llK~lLk~l~~~~~~~~~~~~~lrnl~D~s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~ 153 (379)
T PF06025_consen 74 QQLLKSLLKFLSHAMQHSGGFGDRLRNLIDSSSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAGLI 153 (379)
T ss_pred HHHHHHHHHHHHHHhccCCCcccccccccchhhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHcCCh
Confidence 2334444555555544 32 23334455 455666777777643 234566778888888887766666666689999
Q ss_pred HHHHHHhc-c---CChHHHHHHHHHHHHhcccCcHHHHHHHHHcCChHHHHHHhhhCC
Q 017249 239 LTLVETVE-D---GSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGT 292 (375)
Q Consensus 239 ~~Lv~lL~-~---~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~g~v~~L~~ll~~~~ 292 (375)
+.++..+. . ++.++-...-.+|..||-+. .+.+.+.+.+.++.+.+++.+.+
T Consensus 154 ~~~L~~i~~~~i~~s~e~l~~lP~~l~AicLN~--~Gl~~~~~~~~l~~~f~if~s~~ 209 (379)
T PF06025_consen 154 DAFLDAITAKGILPSSEVLTSLPNVLSAICLNN--RGLEKVKSSNPLDKLFEIFTSPD 209 (379)
T ss_pred HHHHHHHhccCCCCcHHHHHHHHHHHhHHhcCH--HHHHHHHhcChHHHHHHHhCCHH
Confidence 99998887 3 34555556667777888875 77889999999999999887654
No 192
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=93.90 E-value=0.79 Score=48.11 Aligned_cols=139 Identities=17% Similarity=0.118 Sum_probs=99.5
Q ss_pred ChHHHHHhhCC----CCHHHHHHHHHHHHHhhccChhhHHHHHHcCChHHHHHhhc-CCChHHHHHHHHHHHHhhccCCC
Q 017249 69 VVQPLVLMLVS----PNLDAIESSLLALLNLAVRNERNKVKIATAGAIPPLVELLK-FQNGTLRELAAAAILTLSAAAPN 143 (375)
Q Consensus 69 ~v~~Lv~~L~~----~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~-~~~~~~~~~a~~~L~~Ls~~~~~ 143 (375)
..|.+++..+. ++++++..|.-+|+.+..-+.+. ++ ..+|.|+..++ +++|.+|.+++-+++.++..-++
T Consensus 920 f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa~f----ce-s~l~llftimeksp~p~IRsN~VvalgDlav~fpn 994 (1251)
T KOG0414|consen 920 FAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISAEF----CE-SHLPLLFTIMEKSPSPRIRSNLVVALGDLAVRFPN 994 (1251)
T ss_pred HHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhHHH----HH-HHHHHHHHHHhcCCCceeeecchheccchhhhccc
Confidence 35556666643 46999999999999987544322 22 23788999997 67999999999999998875443
Q ss_pred hhHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCCCCchhhhhcCCcHHHHHHhhhcccchHHHHHHHHHHHHhh
Q 017249 144 KPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILS 222 (375)
Q Consensus 144 ~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~ 222 (375)
.-...-+.|...|++.++.++..|..+|.+|...+..+ -.|.+..+...+.++ ++.+...|-..+..|+
T Consensus 995 ----lie~~T~~Ly~rL~D~~~~vRkta~lvlshLILndmiK----VKGql~eMA~cl~D~--~~~IsdlAk~FF~Els 1063 (1251)
T KOG0414|consen 995 ----LIEPWTEHLYRRLRDESPSVRKTALLVLSHLILNDMIK----VKGQLSEMALCLEDP--NAEISDLAKSFFKELS 1063 (1251)
T ss_pred ----ccchhhHHHHHHhcCccHHHHHHHHHHHHHHHHhhhhH----hcccHHHHHHHhcCC--cHHHHHHHHHHHHHhh
Confidence 11233567888999999999999999999997654322 247788888888776 4456665654444444
No 193
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=93.83 E-value=0.73 Score=46.01 Aligned_cols=156 Identities=19% Similarity=0.131 Sum_probs=97.6
Q ss_pred HHHHHHHHh-cCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHh-hCCCCHHHHHHHHHHHHHhhccChhhH
Q 017249 26 LIEELSDKL-INGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLM-LVSPNLDAIESSLLALLNLAVRNERNK 103 (375)
Q Consensus 26 ~l~~Lv~~L-~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~-L~~~~~~~~~~a~~~L~~L~~~~~~~r 103 (375)
....+|+.| .+.||-.+..-+-.+.---.+. ...++|+.|+.. .++.+.+++..|+-+|+-++.++++.
T Consensus 519 ~Ad~lI~el~~dkdpilR~~Gm~t~alAy~GT--------gnnkair~lLh~aVsD~nDDVrRaAVialGFVl~~dp~~- 589 (929)
T KOG2062|consen 519 DADPLIKELLRDKDPILRYGGMYTLALAYVGT--------GNNKAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDPEQ- 589 (929)
T ss_pred hhHHHHHHHhcCCchhhhhhhHHHHHHHHhcc--------CchhhHHHhhcccccccchHHHHHHHHHheeeEecChhh-
Confidence 345555544 4556666555443332211111 113457777776 57778899999999999988876643
Q ss_pred HHHHHcCChHHHHHhhcC-CChHHHHHHHHHHHHhhccCCChhHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhcc-C
Q 017249 104 VKIATAGAIPPLVELLKF-QNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLST-C 181 (375)
Q Consensus 104 ~~i~~~g~i~~Lv~lL~~-~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~~L~~-~ 181 (375)
+|..+++|.. .++-+|..++-+|.-.+....++.. +..|-.+..++..-+++.|+-++.-+.. .
T Consensus 590 --------~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~~eA------i~lLepl~~D~~~fVRQgAlIa~amIm~Q~ 655 (929)
T KOG2062|consen 590 --------LPSTVSLLSESYNPHVRYGAAMALGIACAGTGLKEA------INLLEPLTSDPVDFVRQGALIALAMIMIQQ 655 (929)
T ss_pred --------chHHHHHHhhhcChhhhhhHHHHHhhhhcCCCcHHH------HHHHhhhhcChHHHHHHHHHHHHHHHHHhc
Confidence 4566777754 4899999999999887776555443 4455555566667788888888776543 2
Q ss_pred -CCCchhhhhcCCcHHHHHHhhhccc
Q 017249 182 -KENSSPILDATAVPPLINLLKDCKK 206 (375)
Q Consensus 182 -~~~~~~i~~~g~i~~Lv~ll~~~~~ 206 (375)
+..+..+ .+..+.+.+++.+..+
T Consensus 656 t~~~~pkv--~~frk~l~kvI~dKhE 679 (929)
T KOG2062|consen 656 TEQLCPKV--NGFRKQLEKVINDKHE 679 (929)
T ss_pred ccccCchH--HHHHHHHHHHhhhhhh
Confidence 3333332 2355566677766543
No 194
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.83 E-value=9.6 Score=39.70 Aligned_cols=317 Identities=13% Similarity=0.073 Sum_probs=162.4
Q ss_pred hHHHHHHHHhc------C--CCHHHHHHHHHHHHHHHhhCC--hhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHH
Q 017249 25 ALIEELSDKLI------N--GDLETKIEAARDIRKVVKKSS--LKTRSEFAAAGVVQPLVLMLVSPNLDAIESSLLALLN 94 (375)
Q Consensus 25 ~~l~~Lv~~L~------s--~~~~~~~~a~~~l~~l~~~~~--~~~~~~~~~~g~v~~Lv~~L~~~~~~~~~~a~~~L~~ 94 (375)
+.++.++..|. . .++..+.-|+..+++++..-. ...+.. .+.=.+..+...++++.--+|-.|||.+..
T Consensus 410 k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~-mE~flv~hVfP~f~s~~g~Lrarac~vl~~ 488 (1010)
T KOG1991|consen 410 KILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQ-MEYFLVNHVFPEFQSPYGYLRARACWVLSQ 488 (1010)
T ss_pred hHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHH-HHHHHHHHhhHhhcCchhHHHHHHHHHHHH
Confidence 34555555554 1 245566668888888774220 111111 111235556667788888899999999999
Q ss_pred hhccChhhHHHHHHcCChHHHHHhhc-CCChHHHHHHHHHHHHhhccCC-ChhHHH--hcCChHHHHHHhccCCHHHHHH
Q 017249 95 LAVRNERNKVKIATAGAIPPLVELLK-FQNGTLRELAAAAILTLSAAAP-NKPAIA--ASGAAPLLVQILHSGSVQGRVD 170 (375)
Q Consensus 95 L~~~~~~~r~~i~~~g~i~~Lv~lL~-~~~~~~~~~a~~~L~~Ls~~~~-~~~~i~--~~~~l~~L~~lL~~~~~~~~~~ 170 (375)
++.- +.+..-.-..+++.....|. +++-.++..|+-+|..+..+.+ ....+. -.+.++.|+++.+.-+-+....
T Consensus 489 ~~~~--df~d~~~l~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~lL~L~ne~End~Lt~ 566 (1010)
T KOG1991|consen 489 FSSI--DFKDPNNLSEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVSAHVPPIMQELLKLSNEVENDDLTN 566 (1010)
T ss_pred HHhc--cCCChHHHHHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhhhhhHHHHHHHHHHHhcchhHHHH
Confidence 9942 23333333344666777776 6778899999999999887765 334343 2355566666665554444444
Q ss_pred HHHHHHHhccCC-CCchhhhh--cCCcHHHHHHhhh----cccchHHHHHHHHHHHHhh---CChhhhHHHhh--ccCcH
Q 017249 171 AVTALHYLSTCK-ENSSPILD--ATAVPPLINLLKD----CKKYSKFAEKATALLEILS---SSEEGRIAITN--SDGGI 238 (375)
Q Consensus 171 a~~~L~~L~~~~-~~~~~i~~--~g~i~~Lv~ll~~----~~~~~~~~~~a~~~L~~l~---~~~~~~~~~~~--~~g~v 238 (375)
....+. +... +......+ ........+++.+ ...++.-...|.++|..+. .+-++...++. +.-..
T Consensus 567 vme~iV--~~fseElsPfA~eL~q~La~~F~k~l~~~~~~~~~~ddk~iaA~GiL~Ti~Til~s~e~~p~vl~~le~~~l 644 (1010)
T KOG1991|consen 567 VMEKIV--CKFSEELSPFAVELCQNLAETFLKVLQTSEDEDESDDDKAIAASGILRTISTILLSLENHPEVLKQLEPIVL 644 (1010)
T ss_pred HHHHHH--HHHHHhhchhHHHHHHHHHHHHHHHHhccCCCCccchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 443332 1111 11111111 1233445555553 1111122344666665443 22222332221 12334
Q ss_pred HHHHHHhccCChHHHHHHHHHHHHhcccCcHHHHHHHHHcCChHHHHHHhhhCCHHHHHHHHHHHHHhhcCChhhhhhhh
Q 017249 239 LTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDTPQEKRLSSS 318 (375)
Q Consensus 239 ~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~~~~~~~g 318 (375)
+.+-..|.+.-...-+.++..+.++....+ +....+ =|..+.+.+.+......--....-+|.|............+
T Consensus 645 ~vi~~iL~~~i~dfyeE~~ei~~~~t~~~~-~Isp~m--W~ll~li~e~~~~~~~dyf~d~~~~l~N~vt~g~~~~~s~~ 721 (1010)
T KOG1991|consen 645 PVIGFILKNDITDFYEELLEIVSSLTFLSK-EISPIM--WGLLELILEVFQDDGIDYFTDMMPALHNYVTYGTPSLLSNP 721 (1010)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhhhhhhhc-ccCHHH--HHHHHHHHHHHhhhhHHHHHHHHHHHhhheeeCchhhhccc
Confidence 444455666556677777777777665442 111112 13456666666555444445555566665443322222211
Q ss_pred ----hHHHHHHHHhhcCCChHHHHHHHHHHHHHHH
Q 017249 319 ----VLEKIVYDIAARVDGADKAAETAKRLLQDMV 349 (375)
Q Consensus 319 ----~~~~l~~~l~~~~~g~~~~~~~a~~~l~~l~ 349 (375)
.+-.++..+....+|...=-+.|.+++..+.
T Consensus 722 ~y~~il~~i~~~~l~~e~~~D~d~~~a~kLle~ii 756 (1010)
T KOG1991|consen 722 DYLQILLEIIKKVLTSENGEDSDCESACKLLEVII 756 (1010)
T ss_pred hHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHH
Confidence 2222333332334454444456777776665
No 195
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=93.76 E-value=5.7 Score=36.81 Aligned_cols=157 Identities=13% Similarity=0.100 Sum_probs=110.9
Q ss_pred hHHHHHhhCCCCHHHHHHHHHHHHHhhc-cChhhHHHHHHc-CC-hHHHHHhhcCC-----C--------hHHHHHHHHH
Q 017249 70 VQPLVLMLVSPNLDAIESSLLALLNLAV-RNERNKVKIATA-GA-IPPLVELLKFQ-----N--------GTLRELAAAA 133 (375)
Q Consensus 70 v~~Lv~~L~~~~~~~~~~a~~~L~~L~~-~~~~~r~~i~~~-g~-i~~Lv~lL~~~-----~--------~~~~~~a~~~ 133 (375)
++.+...|++....+...+++.|..++. +.......+... +. .+.|.+++... . +.+|...+..
T Consensus 58 ~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~F 137 (330)
T PF11707_consen 58 LKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIRF 137 (330)
T ss_pred HHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHHHH
Confidence 7888899999888889999999999998 665666666652 32 34555555321 1 2788888887
Q ss_pred HHHhhccCC--Ch-hHHHhcCChHHHHHHhccCCHHHHHHHHHHHHH-hccCC----CCchhhhhcCCcHHHHHHhhhcc
Q 017249 134 ILTLSAAAP--NK-PAIAASGAAPLLVQILHSGSVQGRVDAVTALHY-LSTCK----ENSSPILDATAVPPLINLLKDCK 205 (375)
Q Consensus 134 L~~Ls~~~~--~~-~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~~-L~~~~----~~~~~i~~~g~i~~Lv~ll~~~~ 205 (375)
+..+....+ .+ ..+...+.+..+.+-|...+.++....+.+|.. +..++ ..+..+.+...+..|..+.....
T Consensus 138 ~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~~v~r~~K~~~fn~~~L~~l~~Ly~~~~ 217 (330)
T PF11707_consen 138 WLSFLSSGDPELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKDKVLKDSSVSRSTKCKLFNEWTLSQLASLYSRDG 217 (330)
T ss_pred HHHHHccCCHHHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHhccCCCCChhhhhhhcCHHHHHHHHHHhcccC
Confidence 777766544 23 344466778889999998888999999999884 44443 33445556678888998776553
Q ss_pred c--chHHHHHHHHHHHHhhCChh
Q 017249 206 K--YSKFAEKATALLEILSSSEE 226 (375)
Q Consensus 206 ~--~~~~~~~a~~~L~~l~~~~~ 226 (375)
+ ...+.+.+-..|..+|.++.
T Consensus 218 ~~~~~~~~~~vh~fL~~lcT~p~ 240 (330)
T PF11707_consen 218 EDEKSSVADLVHEFLLALCTDPK 240 (330)
T ss_pred CcccchHHHHHHHHHHHHhcCCC
Confidence 2 22567778888888886543
No 196
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=93.74 E-value=6.7 Score=44.37 Aligned_cols=297 Identities=11% Similarity=0.064 Sum_probs=151.9
Q ss_pred HHHHHHHHHhhCChhhHHHHHhcCChHHHHHh----hCCCCHHHHHHHHHHHHHhhccChhhHH---HHHHcCChHHHHH
Q 017249 45 AARDIRKVVKKSSLKTRSEFAAAGVVQPLVLM----LVSPNLDAIESSLLALLNLAVRNERNKV---KIATAGAIPPLVE 117 (375)
Q Consensus 45 a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~----L~~~~~~~~~~a~~~L~~L~~~~~~~r~---~i~~~g~i~~Lv~ 117 (375)
++.-|..++..+ -+|-.++.......+.+. -.+++..+...|+..|+.++...-+..+ .=.....+.+|..
T Consensus 1112 sLqKLveIa~~N--m~Rirl~W~~iW~~l~~hf~~vg~~~n~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe~ 1189 (1780)
T PLN03076 1112 SLTKIVEIAHYN--MNRIRLVWSSIWHVLSDFFVTIGCSENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVI 1189 (1780)
T ss_pred HHHHHHHHHHhc--ccchheehHhHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHHH
Confidence 444444444444 234444434433333332 2344667888888888888853221111 1122345678888
Q ss_pred hhcCC-ChHHHHHHHHHHHHhhccCCChhHHHhcCChHHHHHHhc----cCCHHHHHHHHHHHHHhccCC-CCc-----h
Q 017249 118 LLKFQ-NGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILH----SGSVQGRVDAVTALHYLSTCK-ENS-----S 186 (375)
Q Consensus 118 lL~~~-~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~l~~L~~lL~----~~~~~~~~~a~~~L~~L~~~~-~~~-----~ 186 (375)
++.+. +.++++..+.|+.++...... .+ .-|++.+..+|. ..++.+...|..++..+.... ... .
T Consensus 1190 im~~s~~~eVrE~ILeCv~qmI~s~~~--nI--kSGWktIF~VLs~aa~d~~e~iV~lAFetl~~I~~d~f~~l~~~~~~ 1265 (1780)
T PLN03076 1190 VMRKSNAVEIRELIIRCVSQMVLSRVN--NV--KSGWKSMFMVFTTAAYDDHKNIVLLAFEIIEKIIREYFPYITETETT 1265 (1780)
T ss_pred HHHhcCchHHHHHHHHHHHHHHHHHHh--hh--hcCcHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHhhhhhccccchh
Confidence 77654 789999999999998654321 12 226677777765 445677788888777665331 100 1
Q ss_pred hhhhcCCcHHHHHHhhhcccchHHHHHHHHHHHHhhCC----hh------------------------hhHHHhh----c
Q 017249 187 PILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSS----EE------------------------GRIAITN----S 234 (375)
Q Consensus 187 ~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~~----~~------------------------~~~~~~~----~ 234 (375)
.+ ...+..|..+..... +.++...|+..|++++.. +- .-..+.. .
T Consensus 1266 ~F--~DlV~cL~~Fa~q~~-~~nISL~AI~lL~~~~~~La~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~ 1342 (1780)
T PLN03076 1266 TF--TDCVNCLIAFTNSRF-NKDISLNAIAFLRFCATKLAEGDLGSSSRNKDKEAPPSSPQSGKDGKQESGEFTDKDDHL 1342 (1780)
T ss_pred HH--HHHHHHHHHHHhCcC-cccccHHHHHHHHHHHHHHHhccccccccccccccccccccccccccccccccccchhHH
Confidence 11 124444444443322 234555666777655211 00 0000000 0
Q ss_pred cCcHHHHHHH---hccCChHHHHHHHHHHHHhcccCcHHHHHHHH---HcCChHHHHHHhhhC----------------C
Q 017249 235 DGGILTLVET---VEDGSLVSTQHAVGALLSLCQSCRDKYRQLIL---KEGAIPGLLRLTVEG----------------T 292 (375)
Q Consensus 235 ~g~v~~Lv~l---L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~---~~g~v~~L~~ll~~~----------------~ 292 (375)
...++.|..+ ..+.+.++|..|+.+|..+....+...-..++ =.+++-++...++.. +
T Consensus 1343 ~lW~pLL~~Ls~l~~D~RlEVR~~ALqtLF~iL~~yG~~Fs~~~W~~if~~VLFPIFd~l~~~~~~~~~~~~~~~~~~~~ 1422 (1780)
T PLN03076 1343 YFWFPLLAGLSELSFDPRPEIRKSALQVLFDTLRNHGHLFSLPLWERVFESVLFPIFDYVRHAIDPSGGDEPEGQGVDGD 1422 (1780)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccccc
Confidence 1244444444 45678999999999998775543322222233 245666666554321 0
Q ss_pred -----HH--HHHHHHHHHHHhhcCChh--hhhhhhhHHHHHHHHhhcC-CChHHHHHHHHHHHHHHHHH
Q 017249 293 -----FE--AQERARTLLDLLRDTPQE--KRLSSSVLEKIVYDIAARV-DGADKAAETAKRLLQDMVQR 351 (375)
Q Consensus 293 -----~~--~~~~A~~~L~~l~~~~~~--~~~~~g~~~~l~~~l~~~~-~g~~~~~~~a~~~l~~l~~~ 351 (375)
.. ..+-+..+|..+..--.. ..+ .+.++.++.+|.+.. .......+....+|++|+..
T Consensus 1423 ~~~~e~~~Wl~eT~~~AL~~lvdLft~fFd~L-~~~L~~~l~ll~~ci~q~n~~la~ig~~~l~~li~~ 1490 (1780)
T PLN03076 1423 QGELDQDAWLYETCTLALQLVVDLFVKFYPTV-NPLLKKVLMLLVSFIKRPHQSLAGIGIAAFVRLMSN 1490 (1780)
T ss_pred ccchhhhhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHH
Confidence 01 234444456665543322 111 124444444433322 22355667777777777644
No 197
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=93.71 E-value=0.34 Score=41.81 Aligned_cols=88 Identities=23% Similarity=0.160 Sum_probs=65.6
Q ss_pred HHHHHHHHHHhhCChhhhHHHhhccCcHH-------HHHHHhc-cCChHHHHHHHHHHHHhcccCcHHHHHHHHHcCChH
Q 017249 211 AEKATALLEILSSSEEGRIAITNSDGGIL-------TLVETVE-DGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIP 282 (375)
Q Consensus 211 ~~~a~~~L~~l~~~~~~~~~~~~~~g~v~-------~Lv~lL~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~g~v~ 282 (375)
+..++.+|+.|+..+.|...++. .+-.. .|+++|. .+++..|+-|+..|.+||..+..-++..-.+.+.|.
T Consensus 141 qrlaLEaLcKLsV~e~NVDliLa-Tpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~~i~ 219 (257)
T PF12031_consen 141 QRLALEALCKLSVIENNVDLILA-TPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKPCIS 219 (257)
T ss_pred HHHHHHHHHHhheeccCcceeee-CCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhchHH
Confidence 57799999999999888888774 44433 3444443 467889999999999999998544444445689999
Q ss_pred HHHHHhhhCCHHHHHHH
Q 017249 283 GLLRLTVEGTFEAQERA 299 (375)
Q Consensus 283 ~L~~ll~~~~~~~~~~A 299 (375)
.|+.++++.....+..+
T Consensus 220 ~Li~FiE~a~~~~~~~~ 236 (257)
T PF12031_consen 220 HLIAFIEDAEQNAHQVA 236 (257)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999997765554433
No 198
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=93.65 E-value=0.25 Score=34.45 Aligned_cols=67 Identities=15% Similarity=0.180 Sum_probs=56.1
Q ss_pred HHHHHHHHHHhccCCCCchhhhhcCCcHHHHHHhhhcccchHHHHHHHHHHHHhhCChhhhHHHhhccC
Q 017249 168 RVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSDG 236 (375)
Q Consensus 168 ~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g 236 (375)
.+.++|++.+++..+.....+-+.++++.++++..+++ .-.++-.|..+|.-++.+.++.+.+- +.|
T Consensus 4 lKaaLWaighIgss~~G~~lL~~~~iv~~iv~~a~~s~-v~siRGT~fy~Lglis~T~~G~~~L~-~~g 70 (73)
T PF14668_consen 4 LKAALWAIGHIGSSPLGIQLLDESDIVEDIVKIAENSP-VLSIRGTCFYVLGLISSTEEGAEILD-ELG 70 (73)
T ss_pred HHHHHHHHHhHhcChHHHHHHhhcCHHHHHHHHHHhCC-ccchHHHHHHHHHHHhCCHHHHHHHH-HcC
Confidence 57899999999998877777777899999999999865 44678889999999999999888776 444
No 199
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=93.30 E-value=0.28 Score=34.17 Aligned_cols=66 Identities=9% Similarity=0.122 Sum_probs=54.2
Q ss_pred HHHHHHHHHHhhccChhhHHHHHHcCChHHHHHhhcC-CChHHHHHHHHHHHHhhccCCChhHHHhcC
Q 017249 85 IESSLLALLNLAVRNERNKVKIATAGAIPPLVELLKF-QNGTLRELAAAAILTLSAAAPNKPAIAASG 151 (375)
Q Consensus 85 ~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~-~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~ 151 (375)
.+.+++++++++. ++..-..+.+.+.++.++++.++ +...+|-.+..+|.-++...+..+.+.+.|
T Consensus 4 lKaaLWaighIgs-s~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T~~G~~~L~~~g 70 (73)
T PF14668_consen 4 LKAALWAIGHIGS-SPLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISSTEEGAEILDELG 70 (73)
T ss_pred HHHHHHHHHhHhc-ChHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCCHHHHHHHHHcC
Confidence 6789999999998 66677777778999999999875 478899999999999998877766665444
No 200
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.27 E-value=1.3 Score=39.83 Aligned_cols=140 Identities=18% Similarity=0.198 Sum_probs=99.7
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhccChhhHHH
Q 017249 26 LIEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIESSLLALLNLAVRNERNKVK 105 (375)
Q Consensus 26 ~l~~Lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~~~~~~~~~a~~~L~~L~~~~~~~r~~ 105 (375)
.+...+..|.+++++.+...+..|..|+... ++...-+. .-++-.+++-+++....+...|+.++..+... ....
T Consensus 89 al~~~l~~L~s~dW~~~vdgLn~irrLs~fh-~e~l~~~L-~~vii~vvkslKNlRS~VsraA~~t~~difs~---ln~~ 163 (334)
T KOG2933|consen 89 ALKQALKKLSSDDWEDKVDGLNSIRRLSEFH-PESLNPML-HEVIIAVVKSLKNLRSAVSRAACMTLADIFSS---LNNS 163 (334)
T ss_pred HHHHHHHHhchHHHHHHhhhHHHHHHHHhhh-HHHHHHHH-HHHHHHHHHHhcChHHHHHHHHHHHHHHHHHH---HHHH
Confidence 5677889999999999999999999999887 44444332 23567778888888889999999999988863 2222
Q ss_pred HHHcCChHHHHHhh-cC---CChHHHHHHHHHHHHhhccCCChhHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHh
Q 017249 106 IATAGAIPPLVELL-KF---QNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYL 178 (375)
Q Consensus 106 i~~~g~i~~Lv~lL-~~---~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~~L 178 (375)
+.. -+..++.+| .. .+.-+++.|-.+|..+..+-.. ...++.|...+.+.++.++..++.+..+.
T Consensus 164 i~~--~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp------~~~L~~L~~~~~~~n~r~r~~a~~~~~~~ 232 (334)
T KOG2933|consen 164 IDQ--ELDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTP------QKLLRKLIPILQHSNPRVRAKAALCFSRC 232 (334)
T ss_pred HHH--HHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccCh------HHHHHHHHHHHhhhchhhhhhhhcccccc
Confidence 222 233344333 22 2566788888888888665432 23467778888889999988888776554
No 201
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=93.24 E-value=1.5 Score=46.14 Aligned_cols=141 Identities=18% Similarity=0.079 Sum_probs=109.1
Q ss_pred HHHHHHHHhc----CCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhC-CCCHHHHHHHHHHHHHhhccCh
Q 017249 26 LIEELSDKLI----NGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLV-SPNLDAIESSLLALLNLAVRNE 100 (375)
Q Consensus 26 ~l~~Lv~~L~----s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~-~~~~~~~~~a~~~L~~L~~~~~ 100 (375)
..|.+++.++ .++|+.|..|.-+|.+++--+ .+... --++.|+..+. ++++.++-.++-+++-++...|
T Consensus 920 f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iS-a~fce-----s~l~llftimeksp~p~IRsN~VvalgDlav~fp 993 (1251)
T KOG0414|consen 920 FAPIVVEGCRNPGLFSDPELQAAATLALGKLMCIS-AEFCE-----SHLPLLFTIMEKSPSPRIRSNLVVALGDLAVRFP 993 (1251)
T ss_pred HHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhh-HHHHH-----HHHHHHHHHHhcCCCceeeecchheccchhhhcc
Confidence 4566666664 468999999999999998666 22222 23788999987 7889999999999998887544
Q ss_pred hhHHHHHHcCChHHHHHhhcCCChHHHHHHHHHHHHhhccCCChhHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhcc
Q 017249 101 RNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLST 180 (375)
Q Consensus 101 ~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~~L~~ 180 (375)
..-+. ..+.|...|...++.+|+.|+-+|.+|..+ ..+...|.+.-+..+|.+++..+..-|=.....|+.
T Consensus 994 nlie~-----~T~~Ly~rL~D~~~~vRkta~lvlshLILn----dmiKVKGql~eMA~cl~D~~~~IsdlAk~FF~Els~ 1064 (1251)
T KOG0414|consen 994 NLIEP-----WTEHLYRRLRDESPSVRKTALLVLSHLILN----DMIKVKGQLSEMALCLEDPNAEISDLAKSFFKELSS 1064 (1251)
T ss_pred cccch-----hhHHHHHHhcCccHHHHHHHHHHHHHHHHh----hhhHhcccHHHHHHHhcCCcHHHHHHHHHHHHHhhh
Confidence 32222 356788888899999999999999999774 344567999999999999999988888877777775
Q ss_pred C
Q 017249 181 C 181 (375)
Q Consensus 181 ~ 181 (375)
.
T Consensus 1065 k 1065 (1251)
T KOG0414|consen 1065 K 1065 (1251)
T ss_pred c
Confidence 4
No 202
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=93.06 E-value=6.9 Score=39.32 Aligned_cols=116 Identities=18% Similarity=0.082 Sum_probs=81.7
Q ss_pred cCChHHHHHhhCCCCHHHHHHHHHHHHHhhccChhhHHHHHHcCChHHHHHhhcCCChHHHHHHHHHHHHhhccCCChhH
Q 017249 67 AGVVQPLVLMLVSPNLDAIESSLLALLNLAVRNERNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPA 146 (375)
Q Consensus 67 ~g~v~~Lv~~L~~~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~ 146 (375)
.|.+..++....+++..++...+..|..+.. +...++.-+-.+..+.+..-+....|.+|..|+.+|..+-.++...
T Consensus 84 ~~~f~hlLRg~Eskdk~VRfrvlqila~l~d-~~~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~de-- 160 (892)
T KOG2025|consen 84 AGTFYHLLRGTESKDKKVRFRVLQILALLSD-ENAEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKDE-- 160 (892)
T ss_pred HHHHHHHHhcccCcchhHHHHHHHHHHHHhc-cccccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCCC--
Confidence 3556677777788899999999999999987 3344555555666778888888889999999999999986443210
Q ss_pred HHhcCChHHHHHHhc-cCCHHHHHHHHHHHHHhccCCCCchhhhh
Q 017249 147 IAASGAAPLLVQILH-SGSVQGRVDAVTALHYLSTCKENSSPILD 190 (375)
Q Consensus 147 i~~~~~l~~L~~lL~-~~~~~~~~~a~~~L~~L~~~~~~~~~i~~ 190 (375)
+..+...+..+++ +++++++..|+. +++.++.....|++
T Consensus 161 --e~~v~n~l~~liqnDpS~EVRRaaLs---nI~vdnsTlp~Ive 200 (892)
T KOG2025|consen 161 --ECPVVNLLKDLIQNDPSDEVRRAALS---NISVDNSTLPCIVE 200 (892)
T ss_pred --cccHHHHHHHHHhcCCcHHHHHHHHH---hhccCcccchhHHH
Confidence 1234566777775 557888887654 55555555555543
No 203
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=93.06 E-value=5.8 Score=37.79 Aligned_cols=174 Identities=12% Similarity=0.058 Sum_probs=103.5
Q ss_pred CHHHHHHHHHHHHHhhcc-ChhhHHHHHHcCChHHHHHhhcC-CChHHHHHHHHHHHHhhccCCChhHHHhcCChHHHHH
Q 017249 81 NLDAIESSLLALLNLAVR-NERNKVKIATAGAIPPLVELLKF-QNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQ 158 (375)
Q Consensus 81 ~~~~~~~a~~~L~~L~~~-~~~~r~~i~~~g~i~~Lv~lL~~-~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~l~~L~~ 158 (375)
..+-++.|+.-|..+..+ +...+.+.+. ..+..++++|.. .++..+..|++.|..++.+.+.+-.=...-++..+++
T Consensus 300 ~a~~~k~alsel~~m~~e~sfsvWeq~f~-~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~DstE~ai~K~Le 378 (516)
T KOG2956|consen 300 RASERKEALSELPKMLCEGSFSVWEQHFA-EILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDSTEIAICKVLE 378 (516)
T ss_pred chhHHHHHHHHHHHHHHccchhHHHHHHH-HHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhchHHHHHHHHHH
Confidence 456677787756555543 3333443322 235578888887 5888899999999999887654322222344566666
Q ss_pred HhccCCHHHHHHHHHH-HHHhccCCCCchhhhhcCCcHHHHHHhhhcccchHHHHHHHHHHHHhhCC--hhhhHHHhhcc
Q 017249 159 ILHSGSVQGRVDAVTA-LHYLSTCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSS--EEGRIAITNSD 235 (375)
Q Consensus 159 lL~~~~~~~~~~a~~~-L~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~~--~~~~~~~~~~~ 235 (375)
.-.+.+.++...|... +..++...+..... .+..++.+.+ ......++..+..++.. .+.--.++ .
T Consensus 379 aa~ds~~~v~~~Aeed~~~~las~~P~~~I~-------~i~~~Ilt~D--~~~~~~~iKm~Tkl~e~l~~EeL~~ll--~ 447 (516)
T KOG2956|consen 379 AAKDSQDEVMRVAEEDCLTTLASHLPLQCIV-------NISPLILTAD--EPRAVAVIKMLTKLFERLSAEELLNLL--P 447 (516)
T ss_pred HHhCCchhHHHHHHHHHHHHHHhhCchhHHH-------HHhhHHhcCc--chHHHHHHHHHHHHHhhcCHHHHHHhh--h
Confidence 6666666665555544 44455443322111 1222222322 22333455556666542 33333344 4
Q ss_pred CcHHHHHHHhccCChHHHHHHHHHHHHhccc
Q 017249 236 GGILTLVETVEDGSLVSTQHAVGALLSLCQS 266 (375)
Q Consensus 236 g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~ 266 (375)
.+.|.+++..++.+..+|+.|+.+|..+...
T Consensus 448 diaP~~iqay~S~SS~VRKtaVfCLVamv~~ 478 (516)
T KOG2956|consen 448 DIAPCVIQAYDSTSSTVRKTAVFCLVAMVNR 478 (516)
T ss_pred hhhhHHHHHhcCchHHhhhhHHHhHHHHHHH
Confidence 6888889999999999999999999887653
No 204
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=93.01 E-value=0.5 Score=40.86 Aligned_cols=125 Identities=24% Similarity=0.191 Sum_probs=81.7
Q ss_pred hHHHHHHHHHHHHhhccCC---ChhHHHhcCChHHHHHHhccC---------------CHHHHHHHHHHHHHhccCCCCc
Q 017249 124 GTLRELAAAAILTLSAAAP---NKPAIAASGAAPLLVQILHSG---------------SVQGRVDAVTALHYLSTCKENS 185 (375)
Q Consensus 124 ~~~~~~a~~~L~~Ls~~~~---~~~~i~~~~~l~~L~~lL~~~---------------~~~~~~~a~~~L~~L~~~~~~~ 185 (375)
..+|+.|+-+|.|++..=+ ..+.| ....++.|++..-++ ...-+..|+.+|+.|+..+.|.
T Consensus 80 ~~lREnalV~laNisgqLdLs~~~e~I-~~PildGLLHWaVcpsa~A~Dpfp~~~~~~~lSPqrlaLEaLcKLsV~e~NV 158 (257)
T PF12031_consen 80 EQLRENALVTLANISGQLDLSDYPESI-ARPILDGLLHWAVCPSAEAQDPFPTAGPHSPLSPQRLALEALCKLSVIENNV 158 (257)
T ss_pred HHHhhcceEeeeeeeeeeecccCchHH-HHHHHHHHHHHHhccchhccCCCCCCCCCCCCCHHHHHHHHHHHhheeccCc
Confidence 4567888888888875422 11111 122233344333221 1234899999999999999999
Q ss_pred hhhhhcCCcH-------HHHHHhhhcccchHHHHHHHHHHHHhhCCh-hhhHHHhhccCcHHHHHHHhccCCh
Q 017249 186 SPILDATAVP-------PLINLLKDCKKYSKFAEKATALLEILSSSE-EGRIAITNSDGGILTLVETVEDGSL 250 (375)
Q Consensus 186 ~~i~~~g~i~-------~Lv~ll~~~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~g~v~~Lv~lL~~~~~ 250 (375)
..+...+-+. .|++++... ++...++.|.-+|.+|+... .....+....+.|..|+.++.+...
T Consensus 159 DliLaTpp~sRlE~l~~~L~r~l~~~-e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~~i~~Li~FiE~a~~ 230 (257)
T PF12031_consen 159 DLILATPPFSRLERLFHTLVRLLGMR-EDQVCREFAVVLLSNLAQGDEAAARAIAMQKPCISHLIAFIEDAEQ 230 (257)
T ss_pred ceeeeCCCHHHHHHHHHHHHHHhccc-cchhHHHHHHHHHHHHhcccHHHHHHHHHhhchHHHHHHHHHHHHH
Confidence 9888765444 344444443 35678999999999999754 4444455567899999999976543
No 205
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=92.95 E-value=4 Score=34.98 Aligned_cols=144 Identities=16% Similarity=0.105 Sum_probs=101.9
Q ss_pred HHHHHHHHHHHHhccCCCCchhhhhcCCcHHHHHHhh---hcccchHHHHHHHHHHHHhhCC--hhhhHHHhhccCcHHH
Q 017249 166 QGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLK---DCKKYSKFAEKATALLEILSSS--EEGRIAITNSDGGILT 240 (375)
Q Consensus 166 ~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~ll~---~~~~~~~~~~~a~~~L~~l~~~--~~~~~~~~~~~g~v~~ 240 (375)
.-...|+..|..+++.++.+..++++...-.+...+. +.+..+.++..++++++.|..+ +...+++. ....||.
T Consensus 115 nRvcnaL~lLQclaShPetk~~Fl~AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLl-tTeivPL 193 (315)
T COG5209 115 NRVCNALNLLQCLASHPETKKVFLDAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLL-TTEIVPL 193 (315)
T ss_pred hHHHHHHHHHHHHhcCcchheeeeecccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHH-hhhHHHH
Confidence 3466788888889999999999988765444444443 3334456777899999999864 55667777 5789999
Q ss_pred HHHHhccCChHHHHHHHHHHHHhcccCcH--HHHHHHHH----cCChHHHHH-HhhhCCHHHHHHHHHHHHHhhcCC
Q 017249 241 LVETVEDGSLVSTQHAVGALLSLCQSCRD--KYRQLILK----EGAIPGLLR-LTVEGTFEAQERARTLLDLLRDTP 310 (375)
Q Consensus 241 Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~--~~~~~l~~----~g~v~~L~~-ll~~~~~~~~~~A~~~L~~l~~~~ 310 (375)
++.+++.+++.-+..|+.++..+..++.. -.++.+-+ ..++..++. +...++.+.-+++.++--.++..+
T Consensus 194 cLrIme~gSElSktvaifI~qkil~dDvGLqYiCqT~eRFyAv~~vln~mv~qlVs~~~~RLlKh~iRcYlRLsd~p 270 (315)
T COG5209 194 CLRIMELGSELSKTVAIFIFQKILGDDVGLQYICQTFERFYAVNLVLNSMVSQLVSLGSTRLLKHAIRCYLRLSDKP 270 (315)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHheeecCCH
Confidence 99999999998899999999888766531 11222212 223333333 555678888899999877777766
No 206
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=92.78 E-value=13 Score=38.34 Aligned_cols=226 Identities=14% Similarity=0.069 Sum_probs=142.0
Q ss_pred CCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhC-CCCHHHHHHHHHHHHHhhccChhhHHHHHHcCChHH
Q 017249 36 NGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLV-SPNLDAIESSLLALLNLAVRNERNKVKIATAGAIPP 114 (375)
Q Consensus 36 s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~-~~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~ 114 (375)
+..|.....+.+++..++... ..+...+ ...+...+..+. +..+-++..|++++...++- ..... ...+++..
T Consensus 461 ~e~P~Ll~Ra~~~i~~fs~~~-~~~~~~~--~~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~~~-~vl~~--~~p~ild~ 534 (1005)
T KOG2274|consen 461 QESPFLLLRAFLTISKFSSST-VINPQLL--QHFLNATVNALTMDVPPPVKISAVRAFCGYCKV-KVLLS--LQPMILDG 534 (1005)
T ss_pred ccCHHHHHHHHHHHHHHHhhh-ccchhHH--HHHHHHHHHhhccCCCCchhHHHHHHHHhccCc-eeccc--cchHHHHH
Confidence 567777777888887666553 1111111 112334444443 33456788888888877731 11111 12466778
Q ss_pred HHHhhcCCChHHHHHHHHHHHHhhccCCChhHHHhcCChHHHHHHhc--cCCHHHHHHHHHHHHHhccCCCCchhhhhcC
Q 017249 115 LVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILH--SGSVQGRVDAVTALHYLSTCKENSSPILDAT 192 (375)
Q Consensus 115 Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~l~~L~~lL~--~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g 192 (375)
|+++....+.++......+|+..+..++......+....|.++.++. ++++.+...+-.++..|+....+...+ ..-
T Consensus 535 L~qlas~~s~evl~llmE~Ls~vv~~dpef~as~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~~~~~g~m-~e~ 613 (1005)
T KOG2274|consen 535 LLQLASKSSDEVLVLLMEALSSVVKLDPEFAASMESKICPLTINLFLKYSEDPQVASLAQDLFEELLQIAANYGPM-QER 613 (1005)
T ss_pred HHHHcccccHHHHHHHHHHHHHHhccChhhhhhhhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhcch-HHH
Confidence 88888878888888888899998888776677677777887777653 456777667777777776543333332 234
Q ss_pred CcHHHHHHhhhcc--cchHHHHHHHHHHHHhhC-ChhhhHHHhhccCcHHHHHHHh-ccCChHHHHHHHHHHHHhcccCc
Q 017249 193 AVPPLINLLKDCK--KYSKFAEKATALLEILSS-SEEGRIAITNSDGGILTLVETV-EDGSLVSTQHAVGALLSLCQSCR 268 (375)
Q Consensus 193 ~i~~Lv~ll~~~~--~~~~~~~~a~~~L~~l~~-~~~~~~~~~~~~g~v~~Lv~lL-~~~~~~~~~~a~~~L~~l~~~~~ 268 (375)
.+|.+++++.... .+......++.+|..+.. .+..-...+. .-++|.+.+.. .+++...-..+-.+|..+...+.
T Consensus 614 ~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~-~~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is~~~ 692 (1005)
T KOG2274|consen 614 LIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLI-CYAFPAVAKITLHSDDHETLQNATECLRALISVTL 692 (1005)
T ss_pred HHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHH-HHHhHHhHhheeecCChHHHHhHHHHHHHHHhcCH
Confidence 8999999998653 123455667777876654 3333333331 24667777665 45566677788888888887764
Q ss_pred H
Q 017249 269 D 269 (375)
Q Consensus 269 ~ 269 (375)
+
T Consensus 693 e 693 (1005)
T KOG2274|consen 693 E 693 (1005)
T ss_pred H
Confidence 3
No 207
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=92.53 E-value=10 Score=36.35 Aligned_cols=186 Identities=16% Similarity=0.124 Sum_probs=114.4
Q ss_pred ChHHHHHhhcCC-ChHHHHHHHHHHHHhhccCCChhHHHhcCChHHHHHHh-ccCC----HHHHHHHHHHHHHhcc-CCC
Q 017249 111 AIPPLVELLKFQ-NGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQIL-HSGS----VQGRVDAVTALHYLST-CKE 183 (375)
Q Consensus 111 ~i~~Lv~lL~~~-~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~l~~L~~lL-~~~~----~~~~~~a~~~L~~L~~-~~~ 183 (375)
.+..++.+..+. ++..+..++.+++.+..--..... -...+..+...+ ...+ ........|....|.. +++
T Consensus 190 ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~~~--l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~~ 267 (415)
T PF12460_consen 190 LLQSLLNLALSSEDEFSRLAALQLLASLVNKWPDDDD--LDEFLDSLLQSISSSEDSELRPQALEILIWITKALVMRGHP 267 (415)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCChhh--HHHHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcCCc
Confidence 455666665444 677888888888888764222111 112333333333 1222 2334444555555542 222
Q ss_pred CchhhhhcCCcHHHHHHhhhcccchHHHHHHHHHHHHhhCC-hhh-------------hHHHhhccCcHHHHHHHhccCC
Q 017249 184 NSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSS-EEG-------------RIAITNSDGGILTLVETVEDGS 249 (375)
Q Consensus 184 ~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~~-~~~-------------~~~~~~~~g~v~~Lv~lL~~~~ 249 (375)
.. ...+..|+.++.+. .+...+.+.+.-+..+ ++. ++.+. .-.+|.|++..+..+
T Consensus 268 ~~-----~~~~~~L~~lL~~~----~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F--~~~~p~L~~~~~~~~ 336 (415)
T PF12460_consen 268 LA-----TELLDKLLELLSSP----ELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFF--TQVLPKLLEGFKEAD 336 (415)
T ss_pred hH-----HHHHHHHHHHhCCh----hhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHH--HHHHHHHHHHHhhcC
Confidence 21 12456677777763 3456677777766655 221 22333 235666776666666
Q ss_pred hHHHHHHHHHHHHhcccCcHHHHHHHHH--cCChHHHHHHhhhCCHHHHHHHHHHHHHhhcCChh
Q 017249 250 LVSTQHAVGALLSLCQSCRDKYRQLILK--EGAIPGLLRLTVEGTFEAQERARTLLDLLRDTPQE 312 (375)
Q Consensus 250 ~~~~~~a~~~L~~l~~~~~~~~~~~l~~--~g~v~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~~ 312 (375)
...+..-+.+|.++..+-+. ..+.. ...+|.|++.+...++.++..+..+|..+-...++
T Consensus 337 ~~~k~~yL~ALs~ll~~vP~---~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~~~ 398 (415)
T PF12460_consen 337 DEIKSNYLTALSHLLKNVPK---SVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEAPE 398 (415)
T ss_pred hhhHHHHHHHHHHHHhhCCH---HHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCHH
Confidence 66888889999999887742 22322 46899999999999999999999999999887754
No 208
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=92.45 E-value=7 Score=34.22 Aligned_cols=137 Identities=23% Similarity=0.164 Sum_probs=88.3
Q ss_pred HHHHHHHh-cCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhccChhhHHH
Q 017249 27 IEELSDKL-INGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIESSLLALLNLAVRNERNKVK 105 (375)
Q Consensus 27 l~~Lv~~L-~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~~~~~~~~~a~~~L~~L~~~~~~~r~~ 105 (375)
++.|+..+ +..+++.+...+..|..++.++ ..+... +++.|..+.+.++.+.+--+.+.+..+-..++...
T Consensus 2 l~~L~~~l~~~~~~~~~~~~L~~L~~l~~~~-~~~~~~-----v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r~f-- 73 (234)
T PF12530_consen 2 LPLLLYKLGKISDPELQLPLLEALPSLACHK-NVCVPP-----VLQTLVSLVEQGSLELRYVALRLLTLLWKANDRHF-- 73 (234)
T ss_pred hHHHHHHhcCCCChHHHHHHHHHHHHHhccC-ccchhH-----HHHHHHHHHcCCchhHHHHHHHHHHHHHHhCchHH--
Confidence 34555534 4778999999999999999887 233332 36677777777777766666676766665433222
Q ss_pred HHHcCChHHHHHhh--------cCC--ChHHHHHHHHHHHHhhccCCChhHHHhcCChHHHHHHh-ccCCHHHHHHHHHH
Q 017249 106 IATAGAIPPLVELL--------KFQ--NGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQIL-HSGSVQGRVDAVTA 174 (375)
Q Consensus 106 i~~~g~i~~Lv~lL--------~~~--~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~l~~L~~lL-~~~~~~~~~~a~~~ 174 (375)
+.+..++..+ .+. ..+.....+.++..++...++ .....++.+..+| ++.++.++..++.+
T Consensus 74 ----~~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~----~g~~ll~~ls~~L~~~~~~~~~alale~ 145 (234)
T PF12530_consen 74 ----PFLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPD----HGVDLLPLLSGCLNQSCDEVAQALALEA 145 (234)
T ss_pred ----HHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChh----hHHHHHHHHHHHHhccccHHHHHHHHHH
Confidence 2333333331 111 233444445677777776554 2235677888888 77788889999999
Q ss_pred HHHhc
Q 017249 175 LHYLS 179 (375)
Q Consensus 175 L~~L~ 179 (375)
|..|+
T Consensus 146 l~~Lc 150 (234)
T PF12530_consen 146 LAPLC 150 (234)
T ss_pred HHHHH
Confidence 99998
No 209
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=92.28 E-value=2.8 Score=42.99 Aligned_cols=285 Identities=13% Similarity=0.089 Sum_probs=160.8
Q ss_pred hhHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCCC--------C---HH-------
Q 017249 22 RKQALIEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSP--------N---LD------- 83 (375)
Q Consensus 22 ~~~~~l~~Lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~~--------~---~~------- 83 (375)
+-...+..-+.+|.-+....+..+...+....... ..-+.|-..++++.|+.++++- + ++
T Consensus 436 v~~~vv~~~~~l~~cs~~~~~~~~~~ff~~~f~fr--ail~~fd~~d~l~~l~~~~~~~~~~~~~n~d~~l~e~~i~ss~ 513 (1516)
T KOG1832|consen 436 VIHQVVKLAIELLDCSQDQARKNSALFFAAAFVFR--AILDAFDAQDSLQKLLAILKDAASVTGANTDRSLPEVMISSSK 513 (1516)
T ss_pred HHHHHHHHHHHHHhcchhhccchHHHHHHHHHHHH--HHHHHHhhhhHHHHHHHHHHHHHHHhccCcCccccHHHhhhhh
Confidence 34445555566665444444445555444443333 4555565667788888877531 1 12
Q ss_pred -HHHHHHHHHHHhh-----ccChhhHHHHHHcCChHHHHHhhcCCC------hHHHHHHHHHHHHhhcc--------CCC
Q 017249 84 -AIESSLLALLNLA-----VRNERNKVKIATAGAIPPLVELLKFQN------GTLRELAAAAILTLSAA--------APN 143 (375)
Q Consensus 84 -~~~~a~~~L~~L~-----~~~~~~r~~i~~~g~i~~Lv~lL~~~~------~~~~~~a~~~L~~Ls~~--------~~~ 143 (375)
.-...+.+|+... -.-+..+..-...|+++..+.-+..+. -+..+..++-+-.+... .+.
T Consensus 514 Q~~~htC~alR~Yf~AHl~Ikve~~~k~~~~r~~~g~~~~~i~~~~~P~~~s~~~~e~I~~q~e~~~~~gp~f~~~~w~~ 593 (1516)
T KOG1832|consen 514 QMAFHTCFALRQYFRAHLLIKVESIRKSRISRGGVGSSMKNIRAAYKPLDISNEAVEAIFLQLEKDRRLGPTFVKAQWPA 593 (1516)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHhhhhhhcccCCCCccccccccCCCcchhhhhHHHHHHHHHHHHHHhChhhhhhcchH
Confidence 2223444444322 112223444445555555555443321 11222333322222111 123
Q ss_pred hhHHHhcCChHHHHHHhccC--------CHHHHHHHHHHHHHhccCCCCchhhhhc--------CCcHHHHHHhhhc--c
Q 017249 144 KPAIAASGAAPLLVQILHSG--------SVQGRVDAVTALHYLSTCKENSSPILDA--------TAVPPLINLLKDC--K 205 (375)
Q Consensus 144 ~~~i~~~~~l~~L~~lL~~~--------~~~~~~~a~~~L~~L~~~~~~~~~i~~~--------g~i~~Lv~ll~~~--~ 205 (375)
..-+...+++..++.++..+ ..+....|+.+|+-++.-++.+..+... .++..++..-... .
T Consensus 594 aenflkls~v~~~L~l~~~~~~w~~~spR~d~~~~Al~vL~i~t~iP~iq~~La~~~~~n~~aydGiaIiL~~a~g~~~i 673 (1516)
T KOG1832|consen 594 AENFLKLSGVVTMLELCQTPPVWRYLSPRHDLLQYALGVLHIVTSIPDIQKALAHATLSNNRAYDGIAIILDAANGSNSI 673 (1516)
T ss_pred HHHHHHhHHHHHHHHHHhcCccccccCcchHHHHHHHhheeeeEecchHHHHHHHHHhhcccccCceEEEeecccccccc
Confidence 34556778888888887543 2467889999999888888877766531 2555554443322 1
Q ss_pred cchHHHHHHHHHHHHhhCCh-hhhHHH----------------------------------hhccCcHHHHHHHhccC--
Q 017249 206 KYSKFAEKATALLEILSSSE-EGRIAI----------------------------------TNSDGGILTLVETVEDG-- 248 (375)
Q Consensus 206 ~~~~~~~~a~~~L~~l~~~~-~~~~~~----------------------------------~~~~g~v~~Lv~lL~~~-- 248 (375)
.++.++..|+.+|-|+...+ +++... ++...++..|+.+|.-.
T Consensus 674 ~Dpei~~~AL~vIincVc~pp~~r~s~i~~v~S~~g~~r~~l~~~~ks~~le~~l~~mw~~Vr~ndGIkiLl~Ll~~k~P 753 (1516)
T KOG1832|consen 674 VDPEIIQPALNVIINCVCPPPTTRPSTIVAVGSQSGDRRIFLGAGTKSAKLEQVLRQMWEAVRGNDGIKILLKLLQYKNP 753 (1516)
T ss_pred cCHHHHHHHHhhhheeecCCCCcchhhhhhccccCCCccccccCCCchHHHHHHHHHHHHHHhcCccHHHHHHHHhccCC
Confidence 25678899999998876544 333322 23567899999998643
Q ss_pred ---ChHHHHHHHHHHHHhcccCcHHHHHHHHHcC-----ChHHHHH--Hhh-hCCH--HHHHHHHHHHHHhhcCC
Q 017249 249 ---SLVSTQHAVGALLSLCQSCRDKYRQLILKEG-----AIPGLLR--LTV-EGTF--EAQERARTLLDLLRDTP 310 (375)
Q Consensus 249 ---~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~g-----~v~~L~~--ll~-~~~~--~~~~~A~~~L~~l~~~~ 310 (375)
.+.+|..||.+|.-|+.++ ..++.+.+.- .+..|+. +.. ..+. ...+.|+.+|......+
T Consensus 754 ~t~aD~IRalAc~~L~GLaR~~--tVrQIltKLpLvt~~~~q~lm~ePV~~Dkr~~H~~fck~A~~Ll~~~~g~~ 826 (1516)
T KOG1832|consen 754 PTTADCIRALACRVLLGLARDD--TVRQILTKLPLVTNERAQILMAEPVTYDKRHEHLQFCKLASALLKEAQGTP 826 (1516)
T ss_pred CCcHHHHHHHHHHHHhccccCc--HHHHHHHhCccccchHHHHHhhCcccccchhHHHHHHHHHHHHHHHHhCCc
Confidence 3578999999999999986 6777776543 3333433 111 2233 33466888888776653
No 210
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=92.24 E-value=9.5 Score=35.31 Aligned_cols=165 Identities=12% Similarity=0.009 Sum_probs=115.5
Q ss_pred HHHHhhHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhc-CC-hHHHHHhhCCC-----C--------H
Q 017249 18 AWNQRKQALIEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAA-GV-VQPLVLMLVSP-----N--------L 82 (375)
Q Consensus 18 ~~~~~~~~~l~~Lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~-g~-v~~Lv~~L~~~-----~--------~ 82 (375)
+..+-.. .++.+.+.|++........+++.+..+...........+.+. +. .+.+-+++... . +
T Consensus 50 ~~~iL~~-~~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~ 128 (330)
T PF11707_consen 50 IRSILQN-HLKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKP 128 (330)
T ss_pred HHHHHHH-HHHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCc
Confidence 3344433 388888899888888888999999999984324555555543 43 44555555321 1 2
Q ss_pred HHHHHHHHHHHH-hhccChhhHHHHHH-cCChHHHHHhhcCCChHHHHHHHHHHHH-hhccCC----ChhHHHhcCChHH
Q 017249 83 DAIESSLLALLN-LAVRNERNKVKIAT-AGAIPPLVELLKFQNGTLRELAAAAILT-LSAAAP----NKPAIAASGAAPL 155 (375)
Q Consensus 83 ~~~~~a~~~L~~-L~~~~~~~r~~i~~-~g~i~~Lv~lL~~~~~~~~~~a~~~L~~-Ls~~~~----~~~~i~~~~~l~~ 155 (375)
.+|...++.+.. +...++..+..+.. .+.+..+.+-|...++++....+.+|.. +..+.. .|..+.....+..
T Consensus 129 siR~~fI~F~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~~v~r~~K~~~fn~~~L~~ 208 (330)
T PF11707_consen 129 SIRTNFIRFWLSFLSSGDPELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKDKVLKDSSVSRSTKCKLFNEWTLSQ 208 (330)
T ss_pred CHHHHHHHHHHHHHccCCHHHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHhccCCCCChhhhhhhcCHHHHHH
Confidence 778888875555 44556667777776 5678889999988889999999999986 444432 2445567778899
Q ss_pred HHHHhccCCH----HHHHHHHHHHHHhccCCC
Q 017249 156 LVQILHSGSV----QGRVDAVTALHYLSTCKE 183 (375)
Q Consensus 156 L~~lL~~~~~----~~~~~a~~~L~~L~~~~~ 183 (375)
|..+....++ .+...+-..|..+|.++.
T Consensus 209 l~~Ly~~~~~~~~~~~~~~vh~fL~~lcT~p~ 240 (330)
T PF11707_consen 209 LASLYSRDGEDEKSSVADLVHEFLLALCTDPK 240 (330)
T ss_pred HHHHhcccCCcccchHHHHHHHHHHHHhcCCC
Confidence 9997776666 778888888888886543
No 211
>KOG1788 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.03 E-value=7.7 Score=40.87 Aligned_cols=254 Identities=16% Similarity=0.157 Sum_probs=143.4
Q ss_pred HHHHHHHhhCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhccChhhHHHHHHcCChHHHHHhhcCC----
Q 017249 47 RDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIESSLLALLNLAVRNERNKVKIATAGAIPPLVELLKFQ---- 122 (375)
Q Consensus 47 ~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~---- 122 (375)
.+|..+.+++ .++.+.+.++.++..+++++-++ +-+-..++.+..|...++..- ...-+-.++..|+++
T Consensus 664 DcLisllKnn-teNqklFreanGvklilpflind--ehRSslLrivscLitvdpkqv----hhqelmalVdtLksgmvt~ 736 (2799)
T KOG1788|consen 664 DCLISLLKNN-TENQKLFREANGVKLILPFLIND--EHRSSLLRIVSCLITVDPKQV----HHQELMALVDTLKSGMVTR 736 (2799)
T ss_pred HHHHHHHhcc-chhhHHHHhhcCceEEEEeeech--HHHHHHHHHHHHHhccCcccc----cHHHHHHHHHHHHhcceec
Confidence 4677788888 89999999999999888888433 445555555555554333311 111133566777663
Q ss_pred --------ChHHHHHHHHHHHHhhcc-CCChhHHHhcCChHHHHHHhcc----------CCHHHHHHHHHH---HHHhc-
Q 017249 123 --------NGTLRELAAAAILTLSAA-APNKPAIAASGAAPLLVQILHS----------GSVQGRVDAVTA---LHYLS- 179 (375)
Q Consensus 123 --------~~~~~~~a~~~L~~Ls~~-~~~~~~i~~~~~l~~L~~lL~~----------~~~~~~~~a~~~---L~~L~- 179 (375)
..........++|.+... ...+..+.+.++...|...|.. ++..+...-... +..++
T Consensus 737 IsgeqyklhfsllcdlmGalwrivgvngsaqrvFgeatGFslLlttLhtfqgftelhdesDlcvyiklfkilFrlfTlav 816 (2799)
T KOG1788|consen 737 ISGEQYKLHFSLLCDLMGALWRIVGVNGSAQRVFGEATGFSLLLTTLHTFQGFTELHDESDLCVYIKLFKILFRLFTLAV 816 (2799)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHccCchheeehhccccHHHHHHHHHHhccchhcCCchhhhhHHHHHHHHHHHHHHHH
Confidence 133455667788887643 4567778888888888777632 121121122222 22222
Q ss_pred -cCCCCchhhhhcCCcHHHHHHhhhcc----------------------cchHH-HH-HHHHHHHHh-----hC------
Q 017249 180 -TCKENSSPILDATAVPPLINLLKDCK----------------------KYSKF-AE-KATALLEIL-----SS------ 223 (375)
Q Consensus 180 -~~~~~~~~i~~~g~i~~Lv~ll~~~~----------------------~~~~~-~~-~a~~~L~~l-----~~------ 223 (375)
.++.|+..+-..=..+.+..+|..+. .++.+ .+ .|+.-+-.+ +.
T Consensus 817 cenasNrmklhtvITsqtftsLLresgllcvnler~viqlllElalevlvppfLtSEsaAcaeVfelednifavntPsGq 896 (2799)
T KOG1788|consen 817 CENASNRMKLHTVITSQTFTSLLRESGLLCVNLERHVIQLLLELALEVLVPPFLTSESAACAEVFELEDNIFAVNTPSGQ 896 (2799)
T ss_pred hhcchhhhheeeeeeHHHHHHHHHHhccceecchHHHHHHHHHHHHHhhCCchhhhhHHHHHHHhhcccceeeeccCCCC
Confidence 33344432211111111222221110 00000 01 111111111 00
Q ss_pred ChhhhHHHhhccCcHHHHHHHhccCChHHHHHHHHHHHHhcccCcHHHHHHHHHcCChHHHHHHhh---hCCHHHHHHHH
Q 017249 224 SEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTV---EGTFEAQERAR 300 (375)
Q Consensus 224 ~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~g~v~~L~~ll~---~~~~~~~~~A~ 300 (375)
....+..+. ..|++..|+..+-...++++..-+..+..++..+ +.+.+.+-..|.++.|++++. +++.-.--++.
T Consensus 897 fnpdk~~iy-nagavRvlirslLlnypK~qlefl~lleSlaRas-pfnaelltS~gcvellleIiypflsgsspfLshal 974 (2799)
T KOG1788|consen 897 FNPDKQKIY-NAGAVRVLIRSLLLNYPKLQLEFLNLLESLARAS-PFNAELLTSAGCVELLLEIIYPFLSGSSPFLSHAL 974 (2799)
T ss_pred cCchHhhhc-ccchhHHHHHHHHhhChHHHHHHHHHHHHHhhcC-CCchhhhhcccHHHHHHHHhhhhhcCCchHhhccH
Confidence 112345566 5799999999988888999999999999999887 466677777899999988764 44444445555
Q ss_pred HHHHHhhcC
Q 017249 301 TLLDLLRDT 309 (375)
Q Consensus 301 ~~L~~l~~~ 309 (375)
.++..|+-.
T Consensus 975 kIvemLgay 983 (2799)
T KOG1788|consen 975 KIVEMLGAY 983 (2799)
T ss_pred HHHHHHhhc
Confidence 665555543
No 212
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=91.83 E-value=13 Score=38.69 Aligned_cols=187 Identities=12% Similarity=0.057 Sum_probs=112.4
Q ss_pred HHHHhccCCHHHHHHHHHHHHHhccCCCCchhhhhcCCcHHHHHHhhhcccchHHHHHHHHHHHHhhCC--hhhhHHHhh
Q 017249 156 LVQILHSGSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSS--EEGRIAITN 233 (375)
Q Consensus 156 L~~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~~--~~~~~~~~~ 233 (375)
+..-+.+.+..-+..|+.-+................|.+..+++....+. +..+...++.+|..++.. ...+...
T Consensus 258 l~t~~~s~~WK~R~Eale~l~~~l~e~~~~~~~~~~~ll~~~~ki~~kDa-N~~v~~~aa~~l~~ia~~lr~~~~~~~-- 334 (815)
T KOG1820|consen 258 LETEMLSKKWKDRKEALEELVAILEEAKKEIVKGYTGLLGILLKIRLKDA-NINVVMLAAQILELIAKKLRPLFRKYA-- 334 (815)
T ss_pred HHHhhhccchHHHHHHHHHHHHHHhccccccccCcchHHHHHHHHhccCc-chhHHHHHHHHHHHHHHhcchhhHHHH--
Confidence 33334555667777888887776655441111122345555555554432 345667778888888753 2333332
Q ss_pred ccCcHHHHHHHhccCChHHHHHHHHHHHHhcccCcHHHHHHHHHcCChHHHHHHhhhCCHHHHHHHHHHHHHhhcCChhh
Q 017249 234 SDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDTPQEK 313 (375)
Q Consensus 234 ~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~~~ 313 (375)
.+..+.++..+.+....++..++.++..++.... -....+.+..++.+++|..+..+...+..+-......
T Consensus 335 -~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns~~--------l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~ 405 (815)
T KOG1820|consen 335 -KNVFPSLLDRLKEKKSELRDALLKALDAILNSTP--------LSKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGPK 405 (815)
T ss_pred -HhhcchHHHHhhhccHHHHHHHHHHHHHHHhccc--------HHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCc
Confidence 3688899999998888899988888877765331 1345667778889999999999888777765544322
Q ss_pred hhhhhhHHHHHHHHhhcC-CChHHHHHHHHHHHHHHHHHHHH
Q 017249 314 RLSSSVLEKIVYDIAARV-DGADKAAETAKRLLQDMVQRSME 354 (375)
Q Consensus 314 ~~~~g~~~~l~~~l~~~~-~g~~~~~~~a~~~l~~l~~~s~~ 354 (375)
...-+.+..++..+..+. |.....+..|.+++.-+.+..-+
T Consensus 406 ~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~~Ge 447 (815)
T KOG1820|consen 406 TVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMKVHGE 447 (815)
T ss_pred CcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHHHhhH
Confidence 333333333333333333 44456666666655555444333
No 213
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=91.78 E-value=0.87 Score=36.54 Aligned_cols=75 Identities=12% Similarity=0.169 Sum_probs=64.4
Q ss_pred CcHHHHHHHhccCChHHHHHHHHHHHHhcccCcHHHHHHHHHcCChHHHHHHhhh-CCHHHHHHHHHHHHHhhcCC
Q 017249 236 GGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVE-GTFEAQERARTLLDLLRDTP 310 (375)
Q Consensus 236 g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~g~v~~L~~ll~~-~~~~~~~~A~~~L~~l~~~~ 310 (375)
.++..|..-|.++++.++..|+.+|-.+..+++......+.+..++..|+.++.. .++.+++....++...+..-
T Consensus 37 ~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~~f 112 (144)
T cd03568 37 DCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWADEF 112 (144)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHh
Confidence 4566777788889999999999999999999877788888889999999999987 78999999999888776433
No 214
>KOG1788 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.66 E-value=6.1 Score=41.56 Aligned_cols=243 Identities=19% Similarity=0.121 Sum_probs=136.8
Q ss_pred hhhHHHHHhhHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCCC------------C
Q 017249 14 QEEEAWNQRKQALIEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSP------------N 81 (375)
Q Consensus 14 ~~~~~~~~~~~~~l~~Lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~~------------~ 81 (375)
++++...|....++..++.++- +.+-+..-++++..+.... +... ...-+-.+|..|+++ .
T Consensus 673 nteNqklFreanGvklilpfli--ndehRSslLrivscLitvd-pkqv----hhqelmalVdtLksgmvt~Isgeqyklh 745 (2799)
T KOG1788|consen 673 NTENQKLFREANGVKLILPFLI--NDEHRSSLLRIVSCLITVD-PKQV----HHQELMALVDTLKSGMVTRISGEQYKLH 745 (2799)
T ss_pred cchhhHHHHhhcCceEEEEeee--chHHHHHHHHHHHHHhccC-cccc----cHHHHHHHHHHHHhcceeccchhHHHHH
Confidence 4455566666666666666652 3344444555666565554 2210 112245667777663 1
Q ss_pred HHHHHHHHHHHHHhhccChhhHHHHHHcCChHHHHHhhcC----------CChHHHHHHHHHHHH-----hhccCCChhH
Q 017249 82 LDAIESSLLALLNLAVRNERNKVKIATAGAIPPLVELLKF----------QNGTLRELAAAAILT-----LSAAAPNKPA 146 (375)
Q Consensus 82 ~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~----------~~~~~~~~a~~~L~~-----Ls~~~~~~~~ 146 (375)
.......+.+++.+.+-+...+..+.+++++..|...|-. ++..+...-...|.. ++.+..|+..
T Consensus 746 fsllcdlmGalwrivgvngsaqrvFgeatGFslLlttLhtfqgftelhdesDlcvyiklfkilFrlfTlavcenasNrmk 825 (2799)
T KOG1788|consen 746 FSLLCDLMGALWRIVGVNGSAQRVFGEATGFSLLLTTLHTFQGFTELHDESDLCVYIKLFKILFRLFTLAVCENASNRMK 825 (2799)
T ss_pred HHHHHHHHHHHHHHHccCchheeehhccccHHHHHHHHHHhccchhcCCchhhhhHHHHHHHHHHHHHHHHhhcchhhhh
Confidence 2445566677787776677788899999999998887721 111122222222222 2333445433
Q ss_pred HHhcCChHHHHHHh--------------------------ccCCHHHHHHHHHHHHHhccC-----------CCCchhhh
Q 017249 147 IAASGAAPLLVQIL--------------------------HSGSVQGRVDAVTALHYLSTC-----------KENSSPIL 189 (375)
Q Consensus 147 i~~~~~l~~L~~lL--------------------------~~~~~~~~~~a~~~L~~L~~~-----------~~~~~~i~ 189 (375)
+-..-..+.+..+| ..+....-..||..+..+-.+ ++.++.+.
T Consensus 826 lhtvITsqtftsLLresgllcvnler~viqlllElalevlvppfLtSEsaAcaeVfelednifavntPsGqfnpdk~~iy 905 (2799)
T KOG1788|consen 826 LHTVITSQTFTSLLRESGLLCVNLERHVIQLLLELALEVLVPPFLTSESAACAEVFELEDNIFAVNTPSGQFNPDKQKIY 905 (2799)
T ss_pred eeeeeeHHHHHHHHHHhccceecchHHHHHHHHHHHHHhhCCchhhhhHHHHHHHhhcccceeeeccCCCCcCchHhhhc
Confidence 22111112222222 222222233444444444211 23566788
Q ss_pred hcCCcHHHHHHhhhcccchHHHHHHHHHHHHhhC-ChhhhHHHhhccCcHHHHHHHhc---cCChHHHHHHHHHHHHhcc
Q 017249 190 DATAVPPLINLLKDCKKYSKFAEKATALLEILSS-SEEGRIAITNSDGGILTLVETVE---DGSLVSTQHAVGALLSLCQ 265 (375)
Q Consensus 190 ~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~-~~~~~~~~~~~~g~v~~Lv~lL~---~~~~~~~~~a~~~L~~l~~ 265 (375)
..|+++.+++.+-.. .++++..-+..+..++. ++.+..-.. ..|++..|++++. +++...-.++..++..++.
T Consensus 906 nagavRvlirslLln--ypK~qlefl~lleSlaRaspfnaellt-S~gcvellleIiypflsgsspfLshalkIvemLga 982 (2799)
T KOG1788|consen 906 NAGAVRVLIRSLLLN--YPKLQLEFLNLLESLARASPFNAELLT-SAGCVELLLEIIYPFLSGSSPFLSHALKIVEMLGA 982 (2799)
T ss_pred ccchhHHHHHHHHhh--ChHHHHHHHHHHHHHhhcCCCchhhhh-cccHHHHHHHHhhhhhcCCchHhhccHHHHHHHhh
Confidence 899999999887765 44667777888888876 555555555 6799999888763 4566666777777776665
Q ss_pred c
Q 017249 266 S 266 (375)
Q Consensus 266 ~ 266 (375)
.
T Consensus 983 y 983 (2799)
T KOG1788|consen 983 Y 983 (2799)
T ss_pred c
Confidence 3
No 215
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=91.59 E-value=1.5 Score=35.13 Aligned_cols=74 Identities=12% Similarity=0.073 Sum_probs=63.0
Q ss_pred CcHHHHHHHhccCChHHHHHHHHHHHHhcccCcHHHHHHHHHcCChHHHHHHhh-hCCHHHHHHHHHHHHHhhcC
Q 017249 236 GGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTV-EGTFEAQERARTLLDLLRDT 309 (375)
Q Consensus 236 g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~g~v~~L~~ll~-~~~~~~~~~A~~~L~~l~~~ 309 (375)
.++..|-.-|.++++.++..|+.+|-.+..+++......+.+.+++..|+.++. ..++.+++.+..++..-+..
T Consensus 41 ~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~ 115 (142)
T cd03569 41 YAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWALA 115 (142)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHHH
Confidence 466778888888999999999999999999876677888888999999999887 56789999999988877643
No 216
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.52 E-value=25 Score=38.68 Aligned_cols=334 Identities=14% Similarity=0.098 Sum_probs=168.7
Q ss_pred HHhhHhHHHHHHHHhc-CCCHHHHHHHHHHHHHHHhhCChhhHHHHHh--cCChHHHHHhhCCCCHHHHHHHHHHHHHhh
Q 017249 20 NQRKQALIEELSDKLI-NGDLETKIEAARDIRKVVKKSSLKTRSEFAA--AGVVQPLVLMLVSPNLDAIESSLLALLNLA 96 (375)
Q Consensus 20 ~~~~~~~l~~Lv~~L~-s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~--~g~v~~Lv~~L~~~~~~~~~~a~~~L~~L~ 96 (375)
.+..-+.+-+++.+-+ +..+..+.=|+.-+..++... ++.+.. ...||.|..+-.+++..++.....+=..|.
T Consensus 951 dl~qPdLVYKFM~LAnh~A~wnSk~GaAfGf~~i~~~a----~~kl~p~l~kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li 1026 (1702)
T KOG0915|consen 951 DLGQPDLVYKFMQLANHNATWNSKKGAAFGFGAIAKQA----GEKLEPYLKKLIPRLYRYQYDPDKKVQDAMTSIWNALI 1026 (1702)
T ss_pred hcCChHHHHHHHHHhhhhchhhcccchhhchHHHHHHH----HHhhhhHHHHhhHHHhhhccCCcHHHHHHHHHHHHHhc
Confidence 3344455555665554 456777777877777777554 222221 145778888888899998877776666666
Q ss_pred ccChhhHHHHHHcCChHHHHHhhcCCChHHHHHHHHHHHHhhccCCChhHHH-hcCChHHHHHHhccCCHHHHHH---HH
Q 017249 97 VRNERNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIA-ASGAAPLLVQILHSGSVQGRVD---AV 172 (375)
Q Consensus 97 ~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~-~~~~l~~L~~lL~~~~~~~~~~---a~ 172 (375)
.++. .-..-+-..++.-|+.-|.+..=.+|+.++-+|..|....+.-...- -...+..+.+.+++=...++.. ++
T Consensus 1027 ~D~k-~~vd~y~neIl~eLL~~lt~kewRVReasclAL~dLl~g~~~~~~~e~lpelw~~~fRvmDDIKEsVR~aa~~~~ 1105 (1702)
T KOG0915|consen 1027 TDSK-KVVDEYLNEILDELLVNLTSKEWRVREASCLALADLLQGRPFDQVKEKLPELWEAAFRVMDDIKESVREAADKAA 1105 (1702)
T ss_pred cChH-HHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6432 33333334566777777788888899999999999988766433321 2345555566655544445544 45
Q ss_pred HHHHHhccC--C-CC--chhhhhcCCcHHHHH--HhhhcccchHHHHHHHHHHHHhhCChhhhHHHhhccCcHHHHHHHh
Q 017249 173 TALHYLSTC--K-EN--SSPILDATAVPPLIN--LLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETV 245 (375)
Q Consensus 173 ~~L~~L~~~--~-~~--~~~i~~~g~i~~Lv~--ll~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~Lv~lL 245 (375)
.+|..|+.. + .+ +..-.-..++|.|+. ++ +....++..++..+..|+.+....-.-. -...++.|+...
T Consensus 1106 ~~lsKl~vr~~d~~~~~~~~~~l~~iLPfLl~~gim---s~v~evr~~si~tl~dl~Kssg~~lkP~-~~~LIp~ll~~~ 1181 (1702)
T KOG0915|consen 1106 RALSKLCVRICDVTNGAKGKEALDIILPFLLDEGIM---SKVNEVRRFSIGTLMDLAKSSGKELKPH-FPKLIPLLLNAY 1181 (1702)
T ss_pred HHHHHHHhhhcccCCcccHHHHHHHHHHHHhccCcc---cchHHHHHHHHHHHHHHHHhchhhhcch-hhHHHHHHHHHc
Confidence 555555522 1 11 111111224444432 12 1234677778888888876533211111 123455555554
Q ss_pred ccCCh-----------HHHHHHHHHHHH-hcccCc-HHHHHHHHH-------cCChHHHHHHhhhC-CHHHHHHHHHHHH
Q 017249 246 EDGSL-----------VSTQHAVGALLS-LCQSCR-DKYRQLILK-------EGAIPGLLRLTVEG-TFEAQERARTLLD 304 (375)
Q Consensus 246 ~~~~~-----------~~~~~a~~~L~~-l~~~~~-~~~~~~l~~-------~g~v~~L~~ll~~~-~~~~~~~A~~~L~ 304 (375)
..-++ ....+|+..++. .+.+++ -+.....+. ...+|.+.++++++ .-.++-.++..+.
T Consensus 1182 s~lE~~vLnYls~r~~~~e~ealDt~R~s~aksspmmeTi~~ci~~iD~~vLeelip~l~el~R~sVgl~Tkvg~A~fI~ 1261 (1702)
T KOG0915|consen 1182 SELEPQVLNYLSLRLINIETEALDTLRASAAKSSPMMETINKCINYIDISVLEELIPRLTELVRGSVGLGTKVGCASFIS 1261 (1702)
T ss_pred cccchHHHHHHHHhhhhhHHHHHHHHHHhhhcCCcHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccCCCCcchhHHHHHH
Confidence 43222 222333333332 122221 011111111 23556666666543 2333444444444
Q ss_pred HhhcCChhhh--hhhhhHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhh
Q 017249 305 LLRDTPQEKR--LSSSVLEKIVYDIAARVDGADKAAETAKRLLQDMVQRSMELSMTRIQQRAA 365 (375)
Q Consensus 305 ~l~~~~~~~~--~~~g~~~~l~~~l~~~~~g~~~~~~~a~~~l~~l~~~s~~~~~~~~~~~~~ 365 (375)
.|...-..++ ..--.+.+++..+ .|-.+-++..-+.++..+.+.+-+..+...++.-+
T Consensus 1262 ~L~~r~~~emtP~sgKll~al~~g~---~dRNesv~kafAsAmG~L~k~Ss~dq~qKLie~~l 1321 (1702)
T KOG0915|consen 1262 LLVQRLGSEMTPYSGKLLRALFPGA---KDRNESVRKAFASAMGYLAKFSSPDQMQKLIETLL 1321 (1702)
T ss_pred HHHHHhccccCcchhHHHHHHhhcc---ccccHHHHHHHHHHHHHHHhcCChHHHHHHHHHHH
Confidence 4432211100 1111333333322 23334445555556777777766666666655544
No 217
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=91.48 E-value=1.6 Score=39.12 Aligned_cols=144 Identities=19% Similarity=0.122 Sum_probs=82.9
Q ss_pred HHHHHHHHHHhccCCCCchhhhhcC--CcHHHHHHhhhcc--cchHHHHHHHHHHHHhhCChhhhHHHhhccC-cHHHHH
Q 017249 168 RVDAVTALHYLSTCKENSSPILDAT--AVPPLINLLKDCK--KYSKFAEKATALLEILSSSEEGRIAITNSDG-GILTLV 242 (375)
Q Consensus 168 ~~~a~~~L~~L~~~~~~~~~i~~~g--~i~~Lv~ll~~~~--~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g-~v~~Lv 242 (375)
+-.++..++-+..++.....+...+ ....+..++.... ........++++++|+-.++.++..+....+ .+...+
T Consensus 80 ~fP~lDLlRl~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ml~lR~l~NlF~~~~~~~~~~~~~~~~i~~~~ 159 (268)
T PF08324_consen 80 RFPALDLLRLAALHPPASDLLASEDSGIADLLSTLISSGSSSSPPANQMLALRLLANLFSHPPGRQLLLSHFDSSILELL 159 (268)
T ss_dssp -HHHHHHHHHHCCCHCHHHHHHSTTTH-HHHHHHHHHCCTTTSSHHHHHHHHHHHHHHTTSCCCHHHHHCTHHTCHHHHC
T ss_pred chhHHhHHHHHHhCccHHHHHhccccchHHHHHHHHHhccCCCcHHHHHHHHHHHHHhhCCCccHHHHHhcccchHHHHH
Confidence 3444444444444433333332221 2344444444332 3445677799999999999999998885444 344444
Q ss_pred HHhccC----ChHHHHHHHHHHHHhcccCcHHHH-HHHHHcCChHHHHHHhh--hCCHHHHHHHHHHHHHhhcCChh
Q 017249 243 ETVEDG----SLVSTQHAVGALLSLCQSCRDKYR-QLILKEGAIPGLLRLTV--EGTFEAQERARTLLDLLRDTPQE 312 (375)
Q Consensus 243 ~lL~~~----~~~~~~~a~~~L~~l~~~~~~~~~-~~l~~~g~v~~L~~ll~--~~~~~~~~~A~~~L~~l~~~~~~ 312 (375)
..+... +..++..++..+.|++.... ..+ ..=.....+..+.+.+. ..++++...+..+|.++......
T Consensus 160 ~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~-~~~~~~~~~~~ll~~i~~~~~~~~~d~Ea~~R~LvAlGtL~~~~~~ 235 (268)
T PF08324_consen 160 SSLLSSLLDSNKNVRIALATLLLNLSVLLH-KNRSDEEWQSELLSSIIEVLSREESDEEALYRLLVALGTLLSSSDS 235 (268)
T ss_dssp HCCCTTS-HHHHHHHHHHHHHHHHHHHHHH-HCTS-CCHHHHHHHHHHHHCHCCHTSHHHHHHHHHHHHHHHCCSHH
T ss_pred HHHhhccccccHHHHHHHHHHHHHHHHHHH-hcCCChHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHhccChh
Confidence 333333 67788888889999876421 100 00011123445555332 36899999999999999966643
No 218
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=91.29 E-value=9.4 Score=36.47 Aligned_cols=150 Identities=16% Similarity=0.113 Sum_probs=94.5
Q ss_pred HHHHhhHhHHHHHHHHhcC-CCHHHHHHHHHHHHHHHhhCChhhHHHHHhc--CChHHHHHhhCCCCHHHHHHHHH-HHH
Q 017249 18 AWNQRKQALIEELSDKLIN-GDLETKIEAARDIRKVVKKSSLKTRSEFAAA--GVVQPLVLMLVSPNLDAIESSLL-ALL 93 (375)
Q Consensus 18 ~~~~~~~~~l~~Lv~~L~s-~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~--g~v~~Lv~~L~~~~~~~~~~a~~-~L~ 93 (375)
.|...-...+..+++-|.. .+...+..|++.|..++... + .++.+. =++..+++.-.+.+.++...|.. ++.
T Consensus 322 vWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q-~---~~l~DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~ 397 (516)
T KOG2956|consen 322 VWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQ-P---ARLFDSTEIAICKVLEAAKDSQDEVMRVAEEDCLT 397 (516)
T ss_pred HHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhc-h---HhhhchHHHHHHHHHHHHhCCchhHHHHHHHHHHH
Confidence 3344444556667777774 67888999999999999776 2 222222 24556666666666555554444 455
Q ss_pred HhhccChhhHHHHHHcCChHHHHHhhcCCChHHHHHHHHHHHHhhccCCChhHH-HhcCChHHHHHHhccCCHHHHHHHH
Q 017249 94 NLAVRNERNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAI-AASGAAPLLVQILHSGSVQGRVDAV 172 (375)
Q Consensus 94 ~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i-~~~~~l~~L~~lL~~~~~~~~~~a~ 172 (375)
.++...|..+ |..+..++-..+...-..++..+..+...-..-... .-....|.+++...+.+..++..|.
T Consensus 398 ~las~~P~~~--------I~~i~~~Ilt~D~~~~~~~iKm~Tkl~e~l~~EeL~~ll~diaP~~iqay~S~SS~VRKtaV 469 (516)
T KOG2956|consen 398 TLASHLPLQC--------IVNISPLILTADEPRAVAVIKMLTKLFERLSAEELLNLLPDIAPCVIQAYDSTSSTVRKTAV 469 (516)
T ss_pred HHHhhCchhH--------HHHHhhHHhcCcchHHHHHHHHHHHHHhhcCHHHHHHhhhhhhhHHHHHhcCchHHhhhhHH
Confidence 5665555433 223444444455555556666777776543322222 2467889999999999999999999
Q ss_pred HHHHHhc
Q 017249 173 TALHYLS 179 (375)
Q Consensus 173 ~~L~~L~ 179 (375)
.||..+-
T Consensus 470 fCLVamv 476 (516)
T KOG2956|consen 470 FCLVAMV 476 (516)
T ss_pred HhHHHHH
Confidence 9988764
No 219
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=91.29 E-value=4.4 Score=40.49 Aligned_cols=252 Identities=15% Similarity=0.116 Sum_probs=150.5
Q ss_pred HHhcCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCCCC--HHHHHHHHHHHHHhhccChhhHHHHHHc
Q 017249 32 DKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPN--LDAIESSLLALLNLAVRNERNKVKIATA 109 (375)
Q Consensus 32 ~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~~~--~~~~~~a~~~L~~L~~~~~~~r~~i~~~ 109 (375)
..++..+.+.+..-...|.+... ..-+.++..-+++.|+..+.-++ .++....+..-.-+.. ++ +..
T Consensus 261 eel~lks~~eK~~Ff~~L~~~l~----~~pe~i~~~kvlp~Ll~~~~~g~a~~~~ltpl~k~~k~ld~--~e-----yq~ 329 (690)
T KOG1243|consen 261 EELRLKSVEEKQKFFSGLIDRLD----NFPEEIIASKVLPILLAALEFGDAASDFLTPLFKLGKDLDE--EE-----YQV 329 (690)
T ss_pred HhcccCcHHHHHHHHHHHHHHHh----hhhHHHHHHHHHHHHHHHhhccccchhhhhHHHHhhhhccc--cc-----ccc
Confidence 33345566666665555555222 22333444556777777776554 3333333332222222 22 677
Q ss_pred CChHHHHHhhcCCChHHHHHHHHHHHHhhccCC-ChhHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCCCCchhh
Q 017249 110 GAIPPLVELLKFQNGTLRELAAAAILTLSAAAP-NKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTCKENSSPI 188 (375)
Q Consensus 110 g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~-~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i 188 (375)
+++|.|++++++.+..+|..- |.++-...+ --..+....++|.+..-+.+.++.++...+.++..|+..=..+ .
T Consensus 330 ~i~p~l~kLF~~~Dr~iR~~L---L~~i~~~i~~Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~~--~ 404 (690)
T KOG1243|consen 330 RIIPVLLKLFKSPDRQIRLLL---LQYIEKYIDHLTKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLSKR--N 404 (690)
T ss_pred chhhhHHHHhcCcchHHHHHH---HHhHHHHhhhcCHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhchh--h
Confidence 889999999999999888544 444433322 3345567788999999999999999999999988887431111 1
Q ss_pred hhcCCcHHHHHHhhhcccchHHHHHHHHHHHHhhCChhhhHHHhhccCcHHHHHHHhccCChHHHHHHHHHHHHhcccCc
Q 017249 189 LDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCR 268 (375)
Q Consensus 189 ~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~ 268 (375)
++...+..+-++-. +++..++-+..-+|..++..-.... +..-.+.....-++++-...|..++..++..+..-.
T Consensus 405 Ln~Ellr~~ar~q~--d~~~~irtntticlgki~~~l~~~~---R~~vL~~aftralkdpf~paR~a~v~~l~at~~~~~ 479 (690)
T KOG1243|consen 405 LNGELLRYLARLQP--DEHGGIRTNTTICLGKIAPHLAASV---RKRVLASAFTRALKDPFVPARKAGVLALAATQEYFD 479 (690)
T ss_pred hcHHHHHHHHhhCc--cccCcccccceeeecccccccchhh---hccccchhhhhhhcCCCCCchhhhhHHHhhcccccc
Confidence 22223444444433 2233455555555666654422111 122223344446677667788888888887665431
Q ss_pred HHHHHHHHHcCChHHHHHHhhhCCHHHHHHHHHHHHHhhc
Q 017249 269 DKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRD 308 (375)
Q Consensus 269 ~~~~~~l~~~g~v~~L~~ll~~~~~~~~~~A~~~L~~l~~ 308 (375)
. .=+...++|.++-+.-+.+..++..|-.++..+-.
T Consensus 480 ~----~~va~kIlp~l~pl~vd~e~~vr~~a~~~i~~fl~ 515 (690)
T KOG1243|consen 480 Q----SEVANKILPSLVPLTVDPEKTVRDTAEKAIRQFLE 515 (690)
T ss_pred h----hhhhhhccccccccccCcccchhhHHHHHHHHHHh
Confidence 1 12456788888888888888888888887766543
No 220
>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]
Probab=91.28 E-value=14 Score=35.44 Aligned_cols=188 Identities=16% Similarity=0.142 Sum_probs=119.1
Q ss_pred HHHHhhcCCChHHHHHHHHHHHHhhccCC----ChhHHHhcCChHHHHHHhccCC-------HHHHHHHHHHHHHhccCC
Q 017249 114 PLVELLKFQNGTLRELAAAAILTLSAAAP----NKPAIAASGAAPLLVQILHSGS-------VQGRVDAVTALHYLSTCK 182 (375)
Q Consensus 114 ~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~----~~~~i~~~~~l~~L~~lL~~~~-------~~~~~~a~~~L~~L~~~~ 182 (375)
.+..+++..+++-+..|+-....+..+++ ++..+.+.-+.+.+-++|.+.+ .-.+.-++..|...|..+
T Consensus 15 ~~~~L~~~k~D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~p 94 (698)
T KOG2611|consen 15 DCLKLLKGKRDEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRVP 94 (698)
T ss_pred hHHHHhcccChHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCCh
Confidence 35566666677778888888888888765 4666777777888888886542 223555666677777776
Q ss_pred CC--chhhhhcCCcHHHHHHhhhcccch-----HHHHHHHHHHHHhhCChhhhHHHhhccCcHHHHHHHhccCC-hHHHH
Q 017249 183 EN--SSPILDATAVPPLINLLKDCKKYS-----KFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGS-LVSTQ 254 (375)
Q Consensus 183 ~~--~~~i~~~g~i~~Lv~ll~~~~~~~-----~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~-~~~~~ 254 (375)
+. ...++ +.||.|..++....+.. .+.+.+-.+|..++..+.+...++ ..|+++.+.++-.-++ ..-..
T Consensus 95 ElAsh~~~v--~~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e~G~~~Li-a~G~~~~~~Q~y~~~~~~~d~a 171 (698)
T KOG2611|consen 95 ELASHEEMV--SRIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAEAGLMTLI-ASGGLRVIAQMYELPDGSHDMA 171 (698)
T ss_pred hhccCHHHH--HhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCCchhHHHH-hcCchHHHHHHHhCCCCchhHH
Confidence 53 33444 37899999987653221 366778899999999999999999 5899999987754322 33334
Q ss_pred HHHHHHHHhcccCc--HHHHHHHHHcCChHHHHHHhhhCCHHHHHHHHHHHHHh
Q 017249 255 HAVGALLSLCQSCR--DKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLL 306 (375)
Q Consensus 255 ~a~~~L~~l~~~~~--~~~~~~l~~~g~v~~L~~ll~~~~~~~~~~A~~~L~~l 306 (375)
.++.++.-....-. ++....+.. .+..+-.=+...+...+...+.+|..+
T Consensus 172 lal~Vlll~~~~~~cw~e~~~~fla--li~~va~df~~~~~a~KfElc~lL~~v 223 (698)
T KOG2611|consen 172 LALKVLLLLVSKLDCWSETIERFLA--LIAAVARDFAVLHNALKFELCHLLSAV 223 (698)
T ss_pred HHHHHHHHHHHhcccCcCCHHHHHH--HHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 55555544433210 011111111 133333333345567778888888844
No 221
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=91.28 E-value=4 Score=42.25 Aligned_cols=193 Identities=13% Similarity=0.123 Sum_probs=114.4
Q ss_pred cCCChHHHHHHHHHHHHhhccCCChhHH-HhcCChHHHHHH-hccCCHHHHHHHHHHHHHhccCCCCchhhhhcCCcHHH
Q 017249 120 KFQNGTLRELAAAAILTLSAAAPNKPAI-AASGAAPLLVQI-LHSGSVQGRVDAVTALHYLSTCKENSSPILDATAVPPL 197 (375)
Q Consensus 120 ~~~~~~~~~~a~~~L~~Ls~~~~~~~~i-~~~~~l~~L~~l-L~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~L 197 (375)
.+.+-.-|..|+.-++....... .... ...+.+-.+++. +.+.|..+...++.+|..++..-..-..=...++++.+
T Consensus 263 ~s~~WK~R~Eale~l~~~l~e~~-~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~~~~~v~p~l 341 (815)
T KOG1820|consen 263 LSKKWKDRKEALEELVAILEEAK-KEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRKYAKNVFPSL 341 (815)
T ss_pred hccchHHHHHHHHHHHHHHhccc-cccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHHHHHhhcchH
Confidence 34444556667776666655444 1111 122333334443 34557778888888888887542221222234577777
Q ss_pred HHHhhhcccchHHHHHHHHHHHHhhCChhhhHHHhhccCcHHHHHHHhccCChHHHHHHHHHHHHhcccCcHHHHHHHHH
Q 017249 198 INLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILK 277 (375)
Q Consensus 198 v~ll~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~ 277 (375)
+.-+.+. ...+++.+..++-.++.... -....+.++.++.++++..+..+...+.......++.....-.-
T Consensus 342 ld~lkek--k~~l~d~l~~~~d~~~ns~~-------l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~~~~~~t~ 412 (815)
T KOG1820|consen 342 LDRLKEK--KSELRDALLKALDAILNSTP-------LSKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGPKTVEKETV 412 (815)
T ss_pred HHHhhhc--cHHHHHHHHHHHHHHHhccc-------HHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCcCcchhhH
Confidence 7777664 33556666666654443110 23456677788999999999887777766555432211112222
Q ss_pred cCChHHHHHHhhhCCHHHHHHHHHHHHHhhcCChhhhhhhhhHHHHHHHH
Q 017249 278 EGAIPGLLRLTVEGTFEAQERARTLLDLLRDTPQEKRLSSSVLEKIVYDI 327 (375)
Q Consensus 278 ~g~v~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~~~~~~~g~~~~l~~~l 327 (375)
.+.++.++....+.+..||+.|..++..+-+.. ..+++..++..+
T Consensus 413 ~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~~-----Ge~~~~k~L~~~ 457 (815)
T KOG1820|consen 413 KTLVPHLIKHINDTDKDVRKAALEAVAAVMKVH-----GEEVFKKLLKDL 457 (815)
T ss_pred HHHhHHHhhhccCCcHHHHHHHHHHHHHHHHHh-----hHHHHHHHHHhh
Confidence 567888888888999999999999777664432 344555555444
No 222
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=91.11 E-value=1.9 Score=34.52 Aligned_cols=76 Identities=12% Similarity=0.101 Sum_probs=64.5
Q ss_pred hHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCC-CCHHHHHHHHHHHHHhhcc
Q 017249 23 KQALIEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVS-PNLDAIESSLLALLNLAVR 98 (375)
Q Consensus 23 ~~~~l~~Lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~-~~~~~~~~a~~~L~~L~~~ 98 (375)
..+.+..|.+.|.+.++.++..|+..|-.+..+.-......+.+..++..|+.++.. .+..++...+..+...+..
T Consensus 35 ~k~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~~ 111 (144)
T cd03568 35 AKDCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWADE 111 (144)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHH
Confidence 356788888899999999999999999999988834456667777999999999988 7899999999999988753
No 223
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=91.02 E-value=12 Score=36.42 Aligned_cols=108 Identities=17% Similarity=0.118 Sum_probs=64.0
Q ss_pred CcHHHHHHhhhcccchHHHHHHHHHHHHhhCChhhhHHHhhccCcHHHHHHHhcc------CChHHHHHHHHHHHHhccc
Q 017249 193 AVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVED------GSLVSTQHAVGALLSLCQS 266 (375)
Q Consensus 193 ~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~------~~~~~~~~a~~~L~~l~~~ 266 (375)
.++.++.+|.+--....+...+..++.||+.++.+.. .+..|..+|.+ .+..+...|+..+..+..+
T Consensus 214 sl~~~i~vLCsi~~~~~l~~~~w~~m~nL~~S~~g~~-------~i~~L~~iL~~~~~~~~~~~~~lRGAv~~l~~ll~~ 286 (464)
T PF11864_consen 214 SLSPCIEVLCSIVNSVSLCKPSWRTMRNLLKSHLGHS-------AIRTLCDILRSPDPQNKRDINVLRGAVFFLRMLLWG 286 (464)
T ss_pred HHHHHHHHHhhHhcccccchhHHHHHHHHHcCccHHH-------HHHHHHHHHcccCccccccHHHHhhHHHHHHHHHhc
Confidence 3445555555432223566778889999997665433 44567777732 2344455788888777665
Q ss_pred CcHHHHHHHHHcC--ChHHHHHHhhhCCHHHHHHHHHHHHHhh
Q 017249 267 CRDKYRQLILKEG--AIPGLLRLTVEGTFEAQERARTLLDLLR 307 (375)
Q Consensus 267 ~~~~~~~~l~~~g--~v~~L~~ll~~~~~~~~~~A~~~L~~l~ 307 (375)
.+++....+--.- +++.+...++.+++.+-.....++..+-
T Consensus 287 ~~~~~~~~l~~~~~~vl~sl~~al~~~~~~v~~eIl~~i~~ll 329 (464)
T PF11864_consen 287 SGEQGYPSLPFSPSSVLPSLLNALKSNSPRVDYEILLLINRLL 329 (464)
T ss_pred cccCCcceecccHHHHHHHHHHHHhCCCCeehHHHHHHHHHHH
Confidence 5222222221122 7788888888777777766666555554
No 224
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=90.76 E-value=17 Score=36.87 Aligned_cols=158 Identities=18% Similarity=0.111 Sum_probs=95.2
Q ss_pred hHHHHHhhcCCChHHHHHHHHHHHHhhccCCChhHHHhcCChHHHHHH-hccCCHHHHHHHHHHHHHhccCCCCchhhhh
Q 017249 112 IPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQI-LHSGSVQGRVDAVTALHYLSTCKENSSPILD 190 (375)
Q Consensus 112 i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~l~~L~~l-L~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~ 190 (375)
=+.+-+++.+.+|-+|.....++..- .... ...++|..|++. ..+.|..+++.|.-+|.-++..+.
T Consensus 521 d~lI~el~~dkdpilR~~Gm~t~alA-y~GT-----gnnkair~lLh~aVsD~nDDVrRaAVialGFVl~~dp------- 587 (929)
T KOG2062|consen 521 DPLIKELLRDKDPILRYGGMYTLALA-YVGT-----GNNKAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDP------- 587 (929)
T ss_pred HHHHHHHhcCCchhhhhhhHHHHHHH-Hhcc-----CchhhHHHhhcccccccchHHHHHHHHHheeeEecCh-------
Confidence 34444556666777776665544332 1111 123566777777 567789999999999987764422
Q ss_pred cCCcHHHHHHhhhcccchHHHHHHHHHHHHhhCChhhhHHHhhccCcHHHHHHHhccCChHHHHHHHHHHHHhcccCcHH
Q 017249 191 ATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDK 270 (375)
Q Consensus 191 ~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~ 270 (375)
...+..|.+|..+- ++.++-.+.-+|+..|...-++. ++..|-++..+...-+|+.|+.+++.+.....++
T Consensus 588 -~~~~s~V~lLses~-N~HVRyGaA~ALGIaCAGtG~~e-------Ai~lLepl~~D~~~fVRQgAlIa~amIm~Q~t~~ 658 (929)
T KOG2062|consen 588 -EQLPSTVSLLSESY-NPHVRYGAAMALGIACAGTGLKE-------AINLLEPLTSDPVDFVRQGALIALAMIMIQQTEQ 658 (929)
T ss_pred -hhchHHHHHHhhhc-ChhhhhhHHHHHhhhhcCCCcHH-------HHHHHhhhhcChHHHHHHHHHHHHHHHHHhcccc
Confidence 24556677777653 55677767777776665543332 3344445566777889999998888775543332
Q ss_pred HHHHHHHcCChHHHHHHhhhCCH
Q 017249 271 YRQLILKEGAIPGLLRLTVEGTF 293 (375)
Q Consensus 271 ~~~~l~~~g~v~~L~~ll~~~~~ 293 (375)
....+ .++...+.+++.+.+.
T Consensus 659 ~~pkv--~~frk~l~kvI~dKhE 679 (929)
T KOG2062|consen 659 LCPKV--NGFRKQLEKVINDKHE 679 (929)
T ss_pred cCchH--HHHHHHHHHHhhhhhh
Confidence 22221 3455666666665543
No 225
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=90.70 E-value=1.4 Score=35.11 Aligned_cols=73 Identities=12% Similarity=0.135 Sum_probs=62.0
Q ss_pred CcHHHHHHHhccCChHHHHHHHHHHHHhcccCcHHHHHHHHHcCChHHHHHHhhh------CCHHHHHHHHHHHHHhhc
Q 017249 236 GGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVE------GTFEAQERARTLLDLLRD 308 (375)
Q Consensus 236 g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~g~v~~L~~ll~~------~~~~~~~~A~~~L~~l~~ 308 (375)
.++..|..-|.++++.++..|+.+|-.+..+++......+.+.+++..|++++.. .++.|++....++..-+.
T Consensus 38 ~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 116 (139)
T cd03567 38 LAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWTL 116 (139)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 3567788888899999999999999999998877788888889999999998853 468999999998877654
No 226
>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D. melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.
Probab=90.42 E-value=16 Score=34.38 Aligned_cols=91 Identities=24% Similarity=0.253 Sum_probs=63.8
Q ss_pred hHHHHHhhCC-CCHHHHHHHHHHHHHhhccChhhHHHHHHcCChHHHHHhhcCC-ChHHHHHH-HHHHHHhhccCCChhH
Q 017249 70 VQPLVLMLVS-PNLDAIESSLLALLNLAVRNERNKVKIATAGAIPPLVELLKFQ-NGTLRELA-AAAILTLSAAAPNKPA 146 (375)
Q Consensus 70 v~~Lv~~L~~-~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~-~~~~~~~a-~~~L~~Ls~~~~~~~~ 146 (375)
+..+++-+.+ ....+|..++-.|..-+. +++.|..+...|.++.+++.+... +......+ +.++.-++.+...-..
T Consensus 23 v~ylld~l~~~~~~s~Rr~sll~La~K~~-~~~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d~~~~~l 101 (361)
T PF07814_consen 23 VEYLLDGLESSSSSSVRRSSLLELASKCA-DPQFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSRDGLNMHL 101 (361)
T ss_pred HHHHHhhcccCCCccHHHHHHHHHHHHhC-CHHHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHccCCcchhh
Confidence 6667777763 346788888888888888 789999999999999999999544 33243334 4444445555445555
Q ss_pred HHhcCChHHHHHHhc
Q 017249 147 IAASGAAPLLVQILH 161 (375)
Q Consensus 147 i~~~~~l~~L~~lL~ 161 (375)
+.....+..++.++.
T Consensus 102 ~~~~~~~~ll~~Ll~ 116 (361)
T PF07814_consen 102 LLDRDSLRLLLKLLK 116 (361)
T ss_pred hhchhHHHHHHHHhc
Confidence 556677777788877
No 227
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=90.35 E-value=4.5 Score=40.98 Aligned_cols=132 Identities=20% Similarity=0.175 Sum_probs=78.3
Q ss_pred hHHHHHhhCCC----CHHHHHHHHHHHHHhhccChhhH---------HHHHHcCChHHHHHhhc----CCChHHHHHHHH
Q 017249 70 VQPLVLMLVSP----NLDAIESSLLALLNLAVRNERNK---------VKIATAGAIPPLVELLK----FQNGTLRELAAA 132 (375)
Q Consensus 70 v~~Lv~~L~~~----~~~~~~~a~~~L~~L~~~~~~~r---------~~i~~~g~i~~Lv~lL~----~~~~~~~~~a~~ 132 (375)
+..+.+++.++ ++.++..|+.+++.+....-... ...+....++.|...+. ..+.+-+..++.
T Consensus 433 l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~Lk 512 (618)
T PF01347_consen 433 LKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLK 512 (618)
T ss_dssp HHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeecccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHH
Confidence 45555666543 45677777777777775311111 12223345667776665 345677788899
Q ss_pred HHHHhhccCCChhHHHhcCChHHHHHHhccC---CHHHHHHHHHHHHHhccCCCCchhhhhcCCcHHHHHHhhhcccchH
Q 017249 133 AILTLSAAAPNKPAIAASGAAPLLVQILHSG---SVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDCKKYSK 209 (375)
Q Consensus 133 ~L~~Ls~~~~~~~~i~~~~~l~~L~~lL~~~---~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~ 209 (375)
+|.|+- ....++.|...+... +..++..|+++|..++... ...+.+.+..++.+...+..
T Consensus 513 aLgN~g----------~~~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~-------~~~v~~~l~~I~~n~~e~~E 575 (618)
T PF01347_consen 513 ALGNLG----------HPESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHC-------PEKVREILLPIFMNTTEDPE 575 (618)
T ss_dssp HHHHHT-----------GGGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT--------HHHHHHHHHHHHH-TTS-HH
T ss_pred HhhccC----------CchhhHHHHhHhhhccccchHHHHHHHHHHHHHhhcC-------cHHHHHHHHHHhcCCCCChh
Confidence 999983 346788888888776 5677888888888774331 11244567778877666667
Q ss_pred HHHHHHHHH
Q 017249 210 FAEKATALL 218 (375)
Q Consensus 210 ~~~~a~~~L 218 (375)
++-+|..+|
T Consensus 576 vRiaA~~~l 584 (618)
T PF01347_consen 576 VRIAAYLIL 584 (618)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 776555443
No 228
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=90.29 E-value=22 Score=35.92 Aligned_cols=116 Identities=17% Similarity=0.117 Sum_probs=80.6
Q ss_pred cCChHHHHHhhcCCChHHHHHHHHHHHHhhccCCChhHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCCCCchhh
Q 017249 109 AGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTCKENSSPI 188 (375)
Q Consensus 109 ~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i 188 (375)
.|.+..|++-.++++..+|...+..|..++......+--+-.+....+...+.+..+.++..|..+|..+-..+.+-
T Consensus 84 ~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~de--- 160 (892)
T KOG2025|consen 84 AGTFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKDE--- 160 (892)
T ss_pred HHHHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCCC---
Confidence 45566777777888999999999999998774333333334566777888888899999999999999987543211
Q ss_pred hhcCCcHHHHHHhhhcccchHHHHHHHHHHHHhhCChhhhHHHh
Q 017249 189 LDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAIT 232 (375)
Q Consensus 189 ~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~ 232 (375)
+..++..++.+++.++ ++.++.+ +|.|++.++.....++
T Consensus 161 -e~~v~n~l~~liqnDp-S~EVRRa---aLsnI~vdnsTlp~Iv 199 (892)
T KOG2025|consen 161 -ECPVVNLLKDLIQNDP-SDEVRRA---ALSNISVDNSTLPCIV 199 (892)
T ss_pred -cccHHHHHHHHHhcCC-cHHHHHH---HHHhhccCcccchhHH
Confidence 1134556777787754 5567764 4567777665555544
No 229
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=89.99 E-value=1.9 Score=34.05 Aligned_cols=75 Identities=12% Similarity=0.152 Sum_probs=61.8
Q ss_pred CcHHHHHHHhccCChHHHHHHHHHHHHhcccCcHHHHHHHHHcCChHHHHHHhhh---CCHHHHHHHHHHHHHhhcCC
Q 017249 236 GGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVE---GTFEAQERARTLLDLLRDTP 310 (375)
Q Consensus 236 g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~g~v~~L~~ll~~---~~~~~~~~A~~~L~~l~~~~ 310 (375)
.++..|-..|.++++.++..|+.+|-.+..+++......+.....+..|+.++.. .++.+++.+..++......-
T Consensus 37 ~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~~f 114 (133)
T cd03561 37 EAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSESF 114 (133)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 3566777888899999999999999999998876677777777888889998874 57899999999888776543
No 230
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=89.92 E-value=2.6 Score=34.69 Aligned_cols=108 Identities=19% Similarity=0.120 Sum_probs=71.7
Q ss_pred ChHHHHHhhCCCCHHHHHHHHHHHHHhhccChhhHHHHHHc--CChHHHHHhhcCC-ChHHHHHHHHHHHHhhccCCChh
Q 017249 69 VVQPLVLMLVSPNLDAIESSLLALLNLAVRNERNKVKIATA--GAIPPLVELLKFQ-NGTLRELAAAAILTLSAAAPNKP 145 (375)
Q Consensus 69 ~v~~Lv~~L~~~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~--g~i~~Lv~lL~~~-~~~~~~~a~~~L~~Ls~~~~~~~ 145 (375)
.+..+.++|+++++..++.++..+...+..++ .+.+.+. ..+..|+.+|+++ ++.+.+.++.+|..+...-..++
T Consensus 26 l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~--~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~p 103 (165)
T PF08167_consen 26 LVTRINSLLQSKSAYSRWAGLCLLKVTVEQCS--WEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGKP 103 (165)
T ss_pred HHHHHHHHhCCCChhhHHHHHHHHHHHHHHhh--HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCC
Confidence 35567889999999999999998888876431 4555553 3578899999887 56678888888888765533322
Q ss_pred ----HHHh---cCChHHHHHHhccCCHHHHHHHHHHHHHhcc
Q 017249 146 ----AIAA---SGAAPLLVQILHSGSVQGRVDAVTALHYLST 180 (375)
Q Consensus 146 ----~i~~---~~~l~~L~~lL~~~~~~~~~~a~~~L~~L~~ 180 (375)
.+.. .+.++.++++++. ......++.+|..|-.
T Consensus 104 ~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~ 143 (165)
T PF08167_consen 104 TLTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLP 143 (165)
T ss_pred chHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHH
Confidence 2221 2345555555554 3455666666666653
No 231
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=89.91 E-value=3 Score=33.21 Aligned_cols=75 Identities=12% Similarity=0.149 Sum_probs=62.4
Q ss_pred HhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCC------CCHHHHHHHHHHHHHhhc
Q 017249 24 QALIEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVS------PNLDAIESSLLALLNLAV 97 (375)
Q Consensus 24 ~~~l~~Lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~------~~~~~~~~a~~~L~~L~~ 97 (375)
.+++..+...|+++++.++..|+..|-.+..+.-+.....+.+.+++..|+++++. .+..++...+..+...+.
T Consensus 37 k~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 116 (139)
T cd03567 37 QLAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWTL 116 (139)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 46788888999999999999999999999887634566677778999999999963 468999999999888875
Q ss_pred c
Q 017249 98 R 98 (375)
Q Consensus 98 ~ 98 (375)
.
T Consensus 117 ~ 117 (139)
T cd03567 117 E 117 (139)
T ss_pred H
Confidence 3
No 232
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=89.84 E-value=2.9 Score=33.42 Aligned_cols=75 Identities=15% Similarity=0.170 Sum_probs=63.0
Q ss_pred hHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhC-CCCHHHHHHHHHHHHHhhc
Q 017249 23 KQALIEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLV-SPNLDAIESSLLALLNLAV 97 (375)
Q Consensus 23 ~~~~l~~Lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~-~~~~~~~~~a~~~L~~L~~ 97 (375)
..+++..|-+.|+++++.++..|+..|-.+..+.-......+.+.+++..|+.++. ..++.++..++..+...+.
T Consensus 39 ~k~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 114 (142)
T cd03569 39 PKYAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWAL 114 (142)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHH
Confidence 46778889999999999999999999999998852455666777899999999987 4678999999999988875
No 233
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=89.83 E-value=6.9 Score=34.93 Aligned_cols=185 Identities=17% Similarity=0.087 Sum_probs=106.5
Q ss_pred hHHHHHhhCCCCHHHHHHHHHHHHHhhccChhhHHHHHHcC--ChHHHHHhhcC----CChHHHHHHHHHHHHhhccCCC
Q 017249 70 VQPLVLMLVSPNLDAIESSLLALLNLAVRNERNKVKIATAG--AIPPLVELLKF----QNGTLRELAAAAILTLSAAAPN 143 (375)
Q Consensus 70 v~~Lv~~L~~~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g--~i~~Lv~lL~~----~~~~~~~~a~~~L~~Ls~~~~~ 143 (375)
...+...+.+...+-+--++..++-+.. ++..-..+...+ ....+..++.. ..+..+-.++++++|+..+..+
T Consensus 65 ~~~~~~~~~~Wp~~~~fP~lDLlRl~~l-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ml~lR~l~NlF~~~~~ 143 (268)
T PF08324_consen 65 LILLLKILLSWPPESRFPALDLLRLAAL-HPPASDLLASEDSGIADLLSTLISSGSSSSPPANQMLALRLLANLFSHPPG 143 (268)
T ss_dssp HHHHHHHHCCS-CCC-HHHHHHHHHHCC-CHCHHHHHHSTTTH-HHHHHHHHHCCTTTSSHHHHHHHHHHHHHHTTSCCC
T ss_pred HHHHHHHHHhCCCccchhHHhHHHHHHh-CccHHHHHhccccchHHHHHHHHHhccCCCcHHHHHHHHHHHHHhhCCCcc
Confidence 4555666666555567778887877776 566655555443 23444444432 3677788999999999999888
Q ss_pred hhHHHhc-C-ChHHHHHHhccC----CHHHHHHHHHHHHHhccC--CCCchhhhhcCCcHHHHHHhhhcccchHHHHHHH
Q 017249 144 KPAIAAS-G-AAPLLVQILHSG----SVQGRVDAVTALHYLSTC--KENSSPILDATAVPPLINLLKDCKKYSKFAEKAT 215 (375)
Q Consensus 144 ~~~i~~~-~-~l~~L~~lL~~~----~~~~~~~a~~~L~~L~~~--~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~ 215 (375)
+..+... + .+-..+..+... +..++..++.++.|++.. ......=.....+..++..+.....+++..-.++
T Consensus 144 ~~~~~~~~~~~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~~ll~~i~~~~~~~~~d~Ea~~R~L 223 (268)
T PF08324_consen 144 RQLLLSHFDSSILELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQSELLSSIIEVLSREESDEEALYRLL 223 (268)
T ss_dssp HHHHHCTHHTCHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHHHHHHHHHHHCHCCHTSHHHHHHHH
T ss_pred HHHHHhcccchHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccccCCHHHHHHHH
Confidence 8777633 3 333333333333 677888899999999743 1111110111244555564433323445556688
Q ss_pred HHHHHhhCChhhhHHHhhccCcHHHHHHHhc-cCChHHHHH
Q 017249 216 ALLEILSSSEEGRIAITNSDGGILTLVETVE-DGSLVSTQH 255 (375)
Q Consensus 216 ~~L~~l~~~~~~~~~~~~~~g~v~~Lv~lL~-~~~~~~~~~ 255 (375)
-+|++|...+..........|+-..+-..-. ...+.+++.
T Consensus 224 vAlGtL~~~~~~~~~~~~~l~~~~~~~~~~~~~~e~ri~~v 264 (268)
T PF08324_consen 224 VALGTLLSSSDSAKQLAKSLDVKSVLSKKANKSKEPRIKEV 264 (268)
T ss_dssp HHHHHHHCCSHHHHHHCCCCTHHHHHHHHHHHTTSHHHHHH
T ss_pred HHHHHHhccChhHHHHHHHcChHHHHHHHHhcccchHHHHH
Confidence 8899999877776666633333333333332 233444443
No 234
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=89.77 E-value=2 Score=31.51 Aligned_cols=74 Identities=12% Similarity=0.113 Sum_probs=60.1
Q ss_pred HhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhccCh
Q 017249 24 QALIEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIESSLLALLNLAVRNE 100 (375)
Q Consensus 24 ~~~l~~Lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~~~~~~~~~a~~~L~~L~~~~~ 100 (375)
...+...+..|+++.+-+|..++..|+++.... . ....-..+++..+...|+++++-+--.|+..|..|+...+
T Consensus 2 ~~~~~~al~~L~dp~~PvRa~gL~~L~~Li~~~-~--~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p 75 (92)
T PF10363_consen 2 RETLQEALSDLNDPLPPVRAHGLVLLRKLIESK-S--EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHP 75 (92)
T ss_pred hHHHHHHHHHccCCCcchHHHHHHHHHHHHHcC-C--cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHCh
Confidence 456778889999999999999999999999988 3 1112223667888899999999999999999999997544
No 235
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=89.75 E-value=22 Score=35.90 Aligned_cols=131 Identities=15% Similarity=0.050 Sum_probs=95.7
Q ss_pred CCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhC-CCCHHHHHHHHHHHHHhhccChhhHHHHHHcCChHHH
Q 017249 37 GDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLV-SPNLDAIESSLLALLNLAVRNERNKVKIATAGAIPPL 115 (375)
Q Consensus 37 ~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~-~~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~L 115 (375)
+|++.+..|--+|.++..-+++-+. .-+|.|+..++ +++|.++..|+-.|+.++--. ..+++ .....|
T Consensus 908 sd~~lq~aA~l~L~klMClS~~fc~------ehlpllIt~mek~p~P~IR~NaVvglgD~~vcf----N~~~d-e~t~yL 976 (1128)
T COG5098 908 SDEELQVAAYLSLYKLMCLSFEFCS------EHLPLLITSMEKHPIPRIRANAVVGLGDFLVCF----NTTAD-EHTHYL 976 (1128)
T ss_pred CCHHHHHHHHHHHHHHHHHhHHHHH------HHHHHHHHHHhhCCCcceeccceeeccccceeh----hhhhH-HHHHHH
Confidence 6899999999999888655512222 23788898886 788999999998888776421 11111 124567
Q ss_pred HHhhcCCChHHHHHHHHHHHHhhccCCChhHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCC
Q 017249 116 VELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTCK 182 (375)
Q Consensus 116 v~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~~L~~~~ 182 (375)
.+-|.+.+..++..++-++..|..... +-..|-++.+..+|.+++..+..-|-..+-.++..+
T Consensus 977 yrrL~De~~~V~rtclmti~fLilagq----~KVKGqlg~ma~~L~deda~Isdmar~fft~~a~Kd 1039 (1128)
T COG5098 977 YRRLGDEDADVRRTCLMTIHFLILAGQ----LKVKGQLGKMALLLTDEDAEISDMARHFFTQIAKKD 1039 (1128)
T ss_pred HHHhcchhhHHHHHHHHHHHHHHHccc----eeeccchhhhHhhccCCcchHHHHHHHHHHHHHhcc
Confidence 777778889999999999999865332 223578889999999999988888887777777553
No 236
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=89.53 E-value=38 Score=37.43 Aligned_cols=145 Identities=8% Similarity=0.035 Sum_probs=102.6
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhccChhhHHH
Q 017249 26 LIEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIESSLLALLNLAVRNERNKVK 105 (375)
Q Consensus 26 ~l~~Lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~~~~~~~~~a~~~L~~L~~~~~~~r~~ 105 (375)
.+..++..|..+....+-.|+++|..+...+|.--... .+-..+-..+.+.+..|++.|+..++...-..++.-.+
T Consensus 817 yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL~~~----dvq~~Vh~R~~DssasVREAaldLvGrfvl~~~e~~~q 892 (1692)
T KOG1020|consen 817 YLKLILSVLGENAIALRTKALKCLSMIVEADPSVLSRP----DVQEAVHGRLNDSSASVREAALDLVGRFVLSIPELIFQ 892 (1692)
T ss_pred HHHHHHHHhcCchHHHHHHHHHHHHHHHhcChHhhcCH----HHHHHHHHhhccchhHHHHHHHHHHhhhhhccHHHHHH
Confidence 57777888888889999999999999998882222222 23344555667778899999999999766656666555
Q ss_pred HHHcCChHHHHHhhcCCChHHHHHHHHHHHHhhccCCChhHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccC
Q 017249 106 IATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTC 181 (375)
Q Consensus 106 i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~~L~~~ 181 (375)
.++ .+..-..+....||..++..+..++...+.-..+.+ ....++....++...++.-++.++.++...
T Consensus 893 yY~-----~i~erIlDtgvsVRKRvIKIlrdic~e~pdf~~i~~--~cakmlrRv~DEEg~I~kLv~etf~klWF~ 961 (1692)
T KOG1020|consen 893 YYD-----QIIERILDTGVSVRKRVIKILRDICEETPDFSKIVD--MCAKMLRRVNDEEGNIKKLVRETFLKLWFT 961 (1692)
T ss_pred HHH-----HHHhhcCCCchhHHHHHHHHHHHHHHhCCChhhHHH--HHHHHHHHhccchhHHHHHHHHHHHHHhcc
Confidence 554 455555566788999999999999987665444431 123333344455556888999999888754
No 237
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=89.53 E-value=1.2 Score=32.65 Aligned_cols=69 Identities=14% Similarity=0.132 Sum_probs=55.9
Q ss_pred hHHHHHhhcCCChHHHHHHHHHHHHhhccCCChhHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccC
Q 017249 112 IPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTC 181 (375)
Q Consensus 112 i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~~L~~~ 181 (375)
+...+..+.++.+.+|.+++..|..|..... ...+...+.+..+...|+++++-+--+|..+|..|+..
T Consensus 5 ~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~-~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~ 73 (92)
T PF10363_consen 5 LQEALSDLNDPLPPVRAHGLVLLRKLIESKS-EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADR 73 (92)
T ss_pred HHHHHHHccCCCcchHHHHHHHHHHHHHcCC-cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHH
Confidence 3455677788889999999999999988766 23333467788889999999999999999999999854
No 238
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=89.34 E-value=6 Score=38.86 Aligned_cols=137 Identities=13% Similarity=0.177 Sum_probs=89.4
Q ss_pred hCChhhhHHHhhccCcHHHHHHHhccCChHHHHHHHHHHHHhcccCcHHHHHHHHHcCChHHHHHHhhhCCHHHHHHHHH
Q 017249 222 SSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERART 301 (375)
Q Consensus 222 ~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~~~~~A~~ 301 (375)
..+|++ ..++ .|.+..++.-+.+.+..+|..++.+|+.+...-.+ .+..+-.|.+..|.+-+-+..+.+|..|+.
T Consensus 80 ~~dpeg-~~~V--~~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~e--IDe~l~N~L~ekl~~R~~DRE~~VR~eAv~ 154 (885)
T COG5218 80 PDDPEG-EELV--AGTFYHLLRGTESKDKKVRKRSLQILALLSDVVRE--IDEVLANGLLEKLSERLFDREKAVRREAVK 154 (885)
T ss_pred CCChhh-hHHH--HHHHHHHHhcccCcchhHHHHHHHHHHHHHHhcch--HHHHHHHHHHHHHHHHHhcchHHHHHHHHH
Confidence 345555 3444 37788888888888999999999999988765532 445566788899999888899999999999
Q ss_pred HHHHhhcCChhhhhhhhhHHHHHHHHhhcCCChHHHHHHHHHHHH-------HHHHHHHH---HhHHHHHHHhhhc
Q 017249 302 LLDLLRDTPQEKRLSSSVLEKIVYDIAARVDGADKAAETAKRLLQ-------DMVQRSME---LSMTRIQQRAASS 367 (375)
Q Consensus 302 ~L~~l~~~~~~~~~~~g~~~~l~~~l~~~~~g~~~~~~~a~~~l~-------~l~~~s~~---~~~~~~~~~~~~~ 367 (375)
+|..+-+....+ +..+..-++..++ .|.+...++.|.--+. -++++..| .|+.+++.|-.-+
T Consensus 155 ~L~~~Qe~~~ne--en~~~n~l~~~vq--nDPS~EVRr~allni~vdnsT~p~IlERarDv~~anRr~vY~r~Lp~ 226 (885)
T COG5218 155 VLCYYQEMELNE--ENRIVNLLKDIVQ--NDPSDEVRRLALLNISVDNSTYPCILERARDVSGANRRMVYERCLPR 226 (885)
T ss_pred HHHHHHhccCCh--HHHHHHHHHHHHh--cCcHHHHHHHHHHHeeeCCCcchhHHHHhhhhhHHHHHHHHHHHhhh
Confidence 999987655221 1123333444455 5666666665533211 12333332 4566666665443
No 239
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=89.28 E-value=6.3 Score=32.39 Aligned_cols=112 Identities=20% Similarity=0.248 Sum_probs=73.5
Q ss_pred HhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcC--ChHHHHHhhCCCC-HHHHHHHHHHHHHhh---c
Q 017249 24 QALIEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAG--VVQPLVLMLVSPN-LDAIESSLLALLNLA---V 97 (375)
Q Consensus 24 ~~~l~~Lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g--~v~~Lv~~L~~~~-~~~~~~a~~~L~~L~---~ 97 (375)
...+.++..+|++++++.+..++..+...+..+ ..+.+.+.+ .+..|+..|+.++ ..+.+.++.+|..+. .
T Consensus 24 ~~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~---~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~ 100 (165)
T PF08167_consen 24 HKLVTRINSLLQSKSAYSRWAGLCLLKVTVEQC---SWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIR 100 (165)
T ss_pred HHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHh---hHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc
Confidence 445566777888999999999988888888665 245565553 6888999998764 556777777776665 4
Q ss_pred cChhhHHHHHH---cCChHHHHHhhcCCChHHHHHHHHHHHHhhcc
Q 017249 98 RNERNKVKIAT---AGAIPPLVELLKFQNGTLRELAAAAILTLSAA 140 (375)
Q Consensus 98 ~~~~~r~~i~~---~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~ 140 (375)
+.++..+.+.. .+.++.++.+++. ......++.+|..+...
T Consensus 101 ~~p~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~ 144 (165)
T PF08167_consen 101 GKPTLTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLPH 144 (165)
T ss_pred CCCchHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHH
Confidence 44554444443 2345555555544 45556677777776543
No 240
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=89.27 E-value=14 Score=35.57 Aligned_cols=262 Identities=13% Similarity=0.052 Sum_probs=129.5
Q ss_pred HHHHHHHHHHHHhhccChhhHHHHHHcCChHHHHHhhcCCChHHHHHHHHHHHHhhcc------CCChhHHHhcCChHHH
Q 017249 83 DAIESSLLALLNLAVRNERNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAA------APNKPAIAASGAAPLL 156 (375)
Q Consensus 83 ~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~------~~~~~~i~~~~~l~~L 156 (375)
.++-+++..|..++..-.-.|..+.+ ....+..-+....+.++.++..++..+-.. ++.-+.-...+.+..+
T Consensus 270 ~~rle~~qvl~~~a~~~~~~~~~~~~--l~RvI~~~~~~~~p~~~l~~a~ll~~lg~~lv~~~~P~~~k~~~q~~~fw~~ 347 (728)
T KOG4535|consen 270 PMRLEALQVLTLLARYFSMTQAYLME--LGRVICKCMGEADPSIQLHGAKLLEELGTGLIQQYKPDSTKAPDQRAPFWTM 347 (728)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHccCCCCChHHHHHHHHHHHHHHHHHhhhcCCCcccchhhhccHHHH
Confidence 35566666666666532222222222 222333334556889999999988776422 1111111111211111
Q ss_pred ------HHHh-ccCCHHHHHHHHHHHHHhccCCCCchhhhhcCCcHHHHHHhhhcccc--hHHHHHHHHHHHHhhCChhh
Q 017249 157 ------VQIL-HSGSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDCKKY--SKFAEKATALLEILSSSEEG 227 (375)
Q Consensus 157 ------~~lL-~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~--~~~~~~a~~~L~~l~~~~~~ 227 (375)
-... ++.-+..+..+|.++.++...+... ...|--..+..++..++++ .-+...|.+.+.-+.-++..
T Consensus 348 ~l~~p~~~~~YDs~~~Tl~~s~Cdals~i~~~~f~~---lpn~~~T~~~~Fl~GC~d~~~~lv~~aA~Ra~~VyVLHp~l 424 (728)
T KOG4535|consen 348 MLNGPLPRALYDSEHPTLQASACDALSSILPEAFSN---LPNDRQTLCITFLLGCNDSKNRLVKAAASRALGVYVLHPCL 424 (728)
T ss_pred HccCCChhhhhhhcCCCchhHHHHHHhhcCchhhcC---CCCcchhhhHHHHhcccchHHHHHHHHHHhhceeEEeccch
Confidence 1111 1223455777888888776421100 0001111122233333222 22444455555555556655
Q ss_pred hHHHhhccCcHHHHHHHhccCChHHHHHHHHHHHHhccc----C-cHHHHHHHHHcCChHHHHHHhh---hCCHHHHHHH
Q 017249 228 RIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQS----C-RDKYRQLILKEGAIPGLLRLTV---EGTFEAQERA 299 (375)
Q Consensus 228 ~~~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~----~-~~~~~~~l~~~g~v~~L~~ll~---~~~~~~~~~A 299 (375)
+....-...+...+...|.+..-..|+.+.|.+.|+... . .++....-+..-.+..+..... -...+++.+|
T Consensus 425 r~d~~fv~~aa~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg~ll~~~~~~A~~~~Ad~dkV~~na 504 (728)
T KOG4535|consen 425 RQDVIFVADAANAILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSGLLLLKMLRSAIEASADKDKVKSNA 504 (728)
T ss_pred hhhHHHHHHHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHH
Confidence 554332345666677777777778899999999998652 1 1111111112223344444332 2458899999
Q ss_pred HHHHHHhhcCChh------hhhhhhhHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHH
Q 017249 300 RTLLDLLRDTPQE------KRLSSSVLEKIVYDIAARVDGADKAAETAKRLLQDMVQR 351 (375)
Q Consensus 300 ~~~L~~l~~~~~~------~~~~~g~~~~l~~~l~~~~~g~~~~~~~a~~~l~~l~~~ 351 (375)
+++|.++...-+. .....+.+.++.+... ..+.-+.+=.|.-++.||++.
T Consensus 505 vraLgnllQvlq~i~~~~~~e~~~~~~~~l~~~v~--~~~~~kV~WNaCya~gNLfkn 560 (728)
T KOG4535|consen 505 VRALGNLLQFLQPIEKPTFAEIIEESIQALISTVL--TEAAMKVRWNACYAMGNLFKN 560 (728)
T ss_pred HHHHhhHHHHHHHhhhccHHHHHHHHHHhccccee--cccccccchHHHHHHHHhhcC
Confidence 9999999865531 2222333333443322 334455666666677777643
No 241
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=88.81 E-value=4.6 Score=31.85 Aligned_cols=76 Identities=14% Similarity=0.123 Sum_probs=62.1
Q ss_pred hHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCC---CCHHHHHHHHHHHHHhhcc
Q 017249 23 KQALIEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVS---PNLDAIESSLLALLNLAVR 98 (375)
Q Consensus 23 ~~~~l~~Lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~---~~~~~~~~a~~~L~~L~~~ 98 (375)
..+++..|-..|+++++.++..|+..|-.+..+..+.....+....++..|+.++.. .++.++..++..+...+..
T Consensus 35 ~k~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~~ 113 (133)
T cd03561 35 PKEAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSES 113 (133)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 356788888899999999999999999999988733455666666888889999975 4789999999999888753
No 242
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=88.31 E-value=7.8 Score=38.10 Aligned_cols=109 Identities=16% Similarity=0.182 Sum_probs=74.8
Q ss_pred HhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcc--Chh
Q 017249 24 QALIEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIESSLLALLNLAVR--NER 101 (375)
Q Consensus 24 ~~~l~~Lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~~~~~~~~~a~~~L~~L~~~--~~~ 101 (375)
.+.+..+++.+.+.+..++..++.+|+.+...- ...+...-.|.+..|.+.+-+..+.++.+|+.+|..+-.. +++
T Consensus 90 ~~~~~h~lRg~eskdk~VR~r~lqila~~~d~v--~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~nee 167 (885)
T COG5218 90 AGTFYHLLRGTESKDKKVRKRSLQILALLSDVV--REIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMELNEE 167 (885)
T ss_pred HHHHHHHHhcccCcchhHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccCChH
Confidence 345666677777889999999999998887655 3333445567788888888888889999999999987643 333
Q ss_pred hHHHHHHcCChHHHHHhhcC-CChHHHHHHHHHHHHhhccCCCh
Q 017249 102 NKVKIATAGAIPPLVELLKF-QNGTLRELAAAAILTLSAAAPNK 144 (375)
Q Consensus 102 ~r~~i~~~g~i~~Lv~lL~~-~~~~~~~~a~~~L~~Ls~~~~~~ 144 (375)
++. ...|+..++. ++.++|..| |.|+..++...
T Consensus 168 n~~-------~n~l~~~vqnDPS~EVRr~a---llni~vdnsT~ 201 (885)
T COG5218 168 NRI-------VNLLKDIVQNDPSDEVRRLA---LLNISVDNSTY 201 (885)
T ss_pred HHH-------HHHHHHHHhcCcHHHHHHHH---HHHeeeCCCcc
Confidence 332 2245555544 467777654 66776655443
No 243
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=88.25 E-value=17 Score=31.80 Aligned_cols=201 Identities=15% Similarity=0.079 Sum_probs=104.2
Q ss_pred HHHHH-hhCCCCHHHHHHHHHHHHHhhccChhhHHHHHHcCChHHHHHhhcCCChHHHHHHHHHHHHhhccCCChhHHHh
Q 017249 71 QPLVL-MLVSPNLDAIESSLLALLNLAVRNERNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAA 149 (375)
Q Consensus 71 ~~Lv~-~L~~~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~ 149 (375)
+.|+- .-+..+++.+...+..|..++..+..+...+ +..|..+.+.++...+..+...+..+-...+- ..
T Consensus 3 ~~L~~~l~~~~~~~~~~~~L~~L~~l~~~~~~~~~~v-----~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r-~f--- 73 (234)
T PF12530_consen 3 PLLLYKLGKISDPELQLPLLEALPSLACHKNVCVPPV-----LQTLVSLVEQGSLELRYVALRLLTLLWKANDR-HF--- 73 (234)
T ss_pred HHHHHHhcCCCChHHHHHHHHHHHHHhccCccchhHH-----HHHHHHHHcCCchhHHHHHHHHHHHHHHhCch-HH---
Confidence 33443 4455688999999999999998541333333 34666666677666666666666666443321 11
Q ss_pred cCChHHHHHH--h------ccC--CHHHHHHHHHHHHHhccCCCCchhhhhcCCcHHHHHHh-hhcccchHHHHHHHHHH
Q 017249 150 SGAAPLLVQI--L------HSG--SVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLL-KDCKKYSKFAEKATALL 218 (375)
Q Consensus 150 ~~~l~~L~~l--L------~~~--~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~ll-~~~~~~~~~~~~a~~~L 218 (375)
+.+..++.. + ... ..+.....+.++..++...++ .....++.+..++ .++ ++..+..++.+|
T Consensus 74 -~~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~----~g~~ll~~ls~~L~~~~--~~~~~alale~l 146 (234)
T PF12530_consen 74 -PFLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPD----HGVDLLPLLSGCLNQSC--DEVAQALALEAL 146 (234)
T ss_pred -HHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChh----hHHHHHHHHHHHHhccc--cHHHHHHHHHHH
Confidence 333433333 1 111 234455556677778765444 2223666777777 343 445677788888
Q ss_pred HHhhCChhhhHHHhhccCcHHHHHHHhccC-ChHHHHHHHHHHHHhcccCcHHHHHHHHHcCChHHHHHHhhhCC
Q 017249 219 EILSSSEEGRIAITNSDGGILTLVETVEDG-SLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGT 292 (375)
Q Consensus 219 ~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~g~v~~L~~ll~~~~ 292 (375)
..|| ...++.-......+...+... .+.+...-+..+..+.....+...-......++..+-++....+
T Consensus 147 ~~Lc-----~~~vvd~~s~w~vl~~~l~~~~rp~v~~~l~~l~~l~~~~~~~~e~~~~~~~~~l~~lW~~~~~~~ 216 (234)
T PF12530_consen 147 APLC-----EAEVVDFYSAWKVLQKKLSLDYRPLVLKSLCSLFALVPQGAVDSEEYEELKRQILQLLWEYTSSSD 216 (234)
T ss_pred HHHH-----HHhhccHHHHHHHHHHhcCCccchHHHHHHHHHHHHhccccCChhhhhHHHHHHHHHHHhhccccc
Confidence 8888 222221122334444545332 34443333333333332221111112234455555555555443
No 244
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=88.16 E-value=6.9 Score=39.18 Aligned_cols=192 Identities=13% Similarity=0.128 Sum_probs=125.7
Q ss_pred hcCChHHHHHHhccCCHHHHHHHHHHHHHhccCCCCchhhhhcCCcHHHHHHhhhcccchHHHHHHHHHHHHhhCChhhh
Q 017249 149 ASGAAPLLVQILHSGSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGR 228 (375)
Q Consensus 149 ~~~~l~~L~~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~~~~~~ 228 (375)
..+.+|.|++++...+..++...+.=+-... +.....+++..++|.+..-+.+. ++.+++.++..+..|+..-..+
T Consensus 328 q~~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i--~~Lt~~~~~d~I~phv~~G~~DT--n~~Lre~Tlksm~~La~kL~~~ 403 (690)
T KOG1243|consen 328 QVRIIPVLLKLFKSPDRQIRLLLLQYIEKYI--DHLTKQILNDQIFPHVALGFLDT--NATLREQTLKSMAVLAPKLSKR 403 (690)
T ss_pred ccchhhhHHHHhcCcchHHHHHHHHhHHHHh--hhcCHHhhcchhHHHHHhhcccC--CHHHHHHHHHHHHHHHhhhchh
Confidence 4568999999999999887766554443332 22345567778999999888876 4578888888888777532222
Q ss_pred HHHhhccCcHHHHHHHhccCChHHHHHHHHHHHHhcccCcHHHHHHHHHcC-ChHHHHHHhhhCCHHHHHHHHHHHHHhh
Q 017249 229 IAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEG-AIPGLLRLTVEGTFEAQERARTLLDLLR 307 (375)
Q Consensus 229 ~~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~g-~v~~L~~ll~~~~~~~~~~A~~~L~~l~ 307 (375)
.+ .......+..+=.+....+|..-..+|..++.+..+. .+.+ .+....+.+++.-+..|..++..+....
T Consensus 404 --~L-n~Ellr~~ar~q~d~~~~irtntticlgki~~~l~~~-----~R~~vL~~aftralkdpf~paR~a~v~~l~at~ 475 (690)
T KOG1243|consen 404 --NL-NGELLRYLARLQPDEHGGIRTNTTICLGKIAPHLAAS-----VRKRVLASAFTRALKDPFVPARKAGVLALAATQ 475 (690)
T ss_pred --hh-cHHHHHHHHhhCccccCcccccceeeecccccccchh-----hhccccchhhhhhhcCCCCCchhhhhHHHhhcc
Confidence 11 1122333333333455678888888888887765332 2333 3344555666777888999999999888
Q ss_pred cCChhhhhhhhhHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHHH
Q 017249 308 DTPQEKRLSSSVLEKIVYDIAARVDGADKAAETAKRLLQDMVQRSMEL 355 (375)
Q Consensus 308 ~~~~~~~~~~g~~~~l~~~l~~~~~g~~~~~~~a~~~l~~l~~~s~~~ 355 (375)
+..+..-++..+++.++... .+.....+..|-+.+..+.....+.
T Consensus 476 ~~~~~~~va~kIlp~l~pl~---vd~e~~vr~~a~~~i~~fl~kl~~~ 520 (690)
T KOG1243|consen 476 EYFDQSEVANKILPSLVPLT---VDPEKTVRDTAEKAIRQFLEKLEKV 520 (690)
T ss_pred cccchhhhhhhccccccccc---cCcccchhhHHHHHHHHHHhhhhhh
Confidence 88877667777888776554 4555666677777777666444333
No 245
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=87.95 E-value=12 Score=37.64 Aligned_cols=134 Identities=14% Similarity=0.088 Sum_probs=90.5
Q ss_pred HhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhccChhhHHHHHHcCChHHHHHhhc-CCChHHHHHHHHHHHHhhccCCC
Q 017249 65 AAAGVVQPLVLMLVSPNLDAIESSLLALLNLAVRNERNKVKIATAGAIPPLVELLK-FQNGTLRELAAAAILTLSAAAPN 143 (375)
Q Consensus 65 ~~~g~v~~Lv~~L~~~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~-~~~~~~~~~a~~~L~~Ls~~~~~ 143 (375)
+...+++.|..-+++.+..+|+.++..+...+.. .--.++..-++|.|..+.. ..+..++..++.|+..+...-+
T Consensus 386 ~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~---iD~~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q~lD- 461 (700)
T KOG2137|consen 386 VKEKILPLLYRSLEDSDVQIQELALQILPTVAES---IDVPFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQRLD- 461 (700)
T ss_pred HHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHh---ccHHHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHHHHHH-
Confidence 3345678888888888999999999999888753 1245566667788877643 3478889999999999882211
Q ss_pred hhHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCCCCchhhhhcCCcHHHHHHhhhc
Q 017249 144 KPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDC 204 (375)
Q Consensus 144 ~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~ 204 (375)
+.. ....+.++.+..+..++.+......+..++.........+....++|.++-+...+
T Consensus 462 ~~~--v~d~~lpi~~~~~~~dp~iv~~~~~i~~~l~~~~~~g~ev~~~~VlPlli~ls~~~ 520 (700)
T KOG2137|consen 462 KAA--VLDELLPILKCIKTRDPAIVMGFLRIYEALALIIYSGVEVMAENVLPLLIPLSVAP 520 (700)
T ss_pred HHH--hHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhcccceeeehhhhhhhhhhhhhcc
Confidence 111 12335566666677788888888888887775433323444456777776665554
No 246
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=87.91 E-value=8.6 Score=39.48 Aligned_cols=168 Identities=17% Similarity=0.078 Sum_probs=109.1
Q ss_pred HHHHHHhhCChhhHHHHHhcCChHHHHHhhCC-CCHHHHHHHHHHHHHhhccChhhHHHHHHcCChH--HHHHhhcCC-C
Q 017249 48 DIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVS-PNLDAIESSLLALLNLAVRNERNKVKIATAGAIP--PLVELLKFQ-N 123 (375)
Q Consensus 48 ~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~-~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~--~Lv~lL~~~-~ 123 (375)
+|.+..... +++...+.+.|++..+...++. ...+.+..++..+.+++.. .+.+..+.....+. .+-.++..- +
T Consensus 494 ~l~~~t~~~-~~~C~~~l~~~g~~~~~~~l~~f~~~~~~~~il~~l~n~~~~-~~~~~~~~~~~~~~~~~f~~~~~~w~~ 571 (699)
T KOG3665|consen 494 ALWNITDEN-PETCKEFLDNGGMKLLFKCLESFDNEELHRKILGLLGNLAEV-LELRELLMIFEFIDFSVFKVLLNKWDS 571 (699)
T ss_pred HHHhhhcCC-HHHHHHHHhcccHHHHHHHHhhccchhHHHHHHHHHHHHHHH-hhhhhhhhHHHHHHHHHHHHHHhhcch
Confidence 666777777 8899999999999999999975 4568899999999999974 33443333222222 333344333 3
Q ss_pred hHHHHHHHHHHHHhhccCCC------hh----HHH--------------hcCChHH-HHHHhccC-CHHHHHHHHHHHHH
Q 017249 124 GTLRELAAAAILTLSAAAPN------KP----AIA--------------ASGAAPL-LVQILHSG-SVQGRVDAVTALHY 177 (375)
Q Consensus 124 ~~~~~~a~~~L~~Ls~~~~~------~~----~i~--------------~~~~l~~-L~~lL~~~-~~~~~~~a~~~L~~ 177 (375)
.+.-..++..|..+..+.+. +. .+. ....+.+ +..++... .+..+..|++++.+
T Consensus 572 ~ersY~~~siLa~ll~~~~~~~~~~~r~~~~~~l~e~i~~~~~~~~~~~~~~~f~~~~~~il~~s~~~g~~lWal~ti~~ 651 (699)
T KOG3665|consen 572 IERSYNAASILALLLSDSEKTTECVFRNSVNELLVEAISRWLTSEIRVINDRSFFPRILRILRLSKSDGSQLWALWTIKN 651 (699)
T ss_pred hhHHHHHHHHHHHHHhCCCcCccccchHHHHHHHHHHhhccCccceeehhhhhcchhHHHHhcccCCCchHHHHHHHHHH
Confidence 37777888888887765331 10 000 0112223 44445443 46678899999999
Q ss_pred hccC-CCCchhhhhcCCcHHHHHHhhhcccchHHHHHHHHHH
Q 017249 178 LSTC-KENSSPILDATAVPPLINLLKDCKKYSKFAEKATALL 218 (375)
Q Consensus 178 L~~~-~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L 218 (375)
+... ++++..+...++++.+.++-.... ...+...+..++
T Consensus 652 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i 692 (699)
T KOG3665|consen 652 VLEQNKEYCKLVRESNGFELIENIRVLSE-VVDVKEEAVLVI 692 (699)
T ss_pred HHHcChhhhhhhHhccchhhhhhcchhHH-HHHHHHHHHHHh
Confidence 8854 578888888899998887766544 444444444443
No 247
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=87.69 E-value=19 Score=36.02 Aligned_cols=161 Identities=17% Similarity=0.163 Sum_probs=93.9
Q ss_pred CHHHHHHHHHHHHHHHhhCChhhHHHH---HhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhccChhhHHHHHHc--CCh
Q 017249 38 DLETKIEAARDIRKVVKKSSLKTRSEF---AAAGVVQPLVLMLVSPNLDAIESSLLALLNLAVRNERNKVKIATA--GAI 112 (375)
Q Consensus 38 ~~~~~~~a~~~l~~l~~~~~~~~~~~~---~~~g~v~~Lv~~L~~~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~--g~i 112 (375)
.++++.-|+-+|+-+..+. ..+-..+ .....+..++..+. .++..+..++++|.|+.. ++..+..+... ..+
T Consensus 557 p~~~~fPalDilRl~v~h~-~~~s~~~~~~~~~~~~~~li~~~~-~~~an~ll~vR~L~N~f~-~~~g~~~~~s~~~~i~ 633 (745)
T KOG0301|consen 557 PVEMMFPALDILRLAVKHH-SSNSLFCDREEGQNLVGTLIPILN-ADPANQLLVVRCLANLFS-NPAGRELFMSRLESIL 633 (745)
T ss_pred CHHHhhhHHHHHHHHHhcc-chhhhhhhhhhhhHHHHhhhcccc-cchhHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHh
Confidence 4555666777777776665 2221111 11235566666666 556778999999999998 47777777653 222
Q ss_pred HHHHHhhcCCChHHHHHHHHHHHHhhcc--CCChhHHHhcCChHHHHHHhccC-----CHHHHHHHHHHHHHhccCCCCc
Q 017249 113 PPLVELLKFQNGTLRELAAAAILTLSAA--APNKPAIAASGAAPLLVQILHSG-----SVQGRVDAVTALHYLSTCKENS 185 (375)
Q Consensus 113 ~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~--~~~~~~i~~~~~l~~L~~lL~~~-----~~~~~~~a~~~L~~L~~~~~~~ 185 (375)
..+.+.-..++..++..-+....|++.. ..+-+ .++.+.+...+... +.+....++.+|.+|+..+...
T Consensus 634 ~~~~~~~s~~~knl~ia~atlaln~sv~l~~~~~~----~~~~~~l~~ai~~~~e~~~d~EA~yR~l~AlgtL~t~~~~~ 709 (745)
T KOG0301|consen 634 DPVIEASSLSNKNLQIALATLALNYSVLLIQDNEQ----LEGKEVLLSAISTLLEPVDDLEAIYRLLVALGTLMTVDASV 709 (745)
T ss_pred hhhhhhhcccchhHHHHHHHHHHHHHHHHHhcccc----cchHHHHHHHHHhhcccchhHHHHHHHHHHHHhhccccHHH
Confidence 3333332233456665555555555432 22111 34445554444321 3345666778888998888777
Q ss_pred hhhhhcCCcHHHHHHhhhcc
Q 017249 186 SPILDATAVPPLINLLKDCK 205 (375)
Q Consensus 186 ~~i~~~g~i~~Lv~ll~~~~ 205 (375)
.++...-.+..+++-+++..
T Consensus 710 ~~~A~~~~v~sia~~~~~~~ 729 (745)
T KOG0301|consen 710 IQLAKNRSVDSIAKKLKEAV 729 (745)
T ss_pred HHHHHhcCHHHHHHHHHHhc
Confidence 77777667777777776654
No 248
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=87.65 E-value=4.3 Score=31.46 Aligned_cols=73 Identities=14% Similarity=0.161 Sum_probs=53.8
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhc-CChHHHHHhhCCCC--------HHHHHHHHHHHHHh
Q 017249 25 ALIEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAA-GVVQPLVLMLVSPN--------LDAIESSLLALLNL 95 (375)
Q Consensus 25 ~~l~~Lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~-g~v~~Lv~~L~~~~--------~~~~~~a~~~L~~L 95 (375)
..+..|.+.|+..++.++.+++++|..++...++..+..+.+. ..|..+.++=...+ ..|+..|-.++..+
T Consensus 38 ei~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~f~~~~~~~~~~Ik~~~~f~g~~Dp~~Gd~~~~~VR~~A~El~~~i 117 (122)
T cd03572 38 ELLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSDFKRELQRNSAQIRECANYKGPPDPLKGDSLNEKVREEAQELIKAI 117 (122)
T ss_pred HHHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHHHHHHHHHhHHHHHHHHHcCCCCCcccCcchhHHHHHHHHHHHHHH
Confidence 5677888888888899999999999999998866777766654 56777777665332 45666666666555
Q ss_pred hc
Q 017249 96 AV 97 (375)
Q Consensus 96 ~~ 97 (375)
..
T Consensus 118 f~ 119 (122)
T cd03572 118 FS 119 (122)
T ss_pred hc
Confidence 43
No 249
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=87.27 E-value=36 Score=34.50 Aligned_cols=115 Identities=11% Similarity=0.073 Sum_probs=82.2
Q ss_pred HHHHHHhccCChHHHHHHHHHHHHhcccCcHHHHHHHHH------cCChHHHHHHhhhCCHHHHHHHHHHHHHhhcCChh
Q 017249 239 LTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILK------EGAIPGLLRLTVEGTFEAQERARTLLDLLRDTPQE 312 (375)
Q Consensus 239 ~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~------~g~v~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~~ 312 (375)
..++.+|++.+-.+|-..+.+.+|+..+-.. ...+.+ ...+..|++-+.+.+|-+|.+|...+..+..-+..
T Consensus 302 ~~~~~LLdses~tlRc~~~EicaN~V~~~~~--d~qm~e~~~~~~~~Lv~ll~ERl~D~~py~RtKalqv~~kifdl~sk 379 (1128)
T COG5098 302 EHFDELLDSESFTLRCCFLEICANLVEHFKK--DGQMVEHYKQKLNDLVGLLVERLSDTYPYTRTKALQVLEKIFDLNSK 379 (1128)
T ss_pred HHHHHHhcccchhHHHHHHHHHHHHHHHHhc--chhhHhhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHhCccc
Confidence 4566778888888888888888898775321 111222 34566677777788999999999999888876632
Q ss_pred -hhhhhhhHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHHHhHH
Q 017249 313 -KRLSSSVLEKIVYDIAARVDGADKAAETAKRLLQDMVQRSMELSMT 358 (375)
Q Consensus 313 -~~~~~g~~~~l~~~l~~~~~g~~~~~~~a~~~l~~l~~~s~~~~~~ 358 (375)
.-.++.++.-.++-++ |.+.-.++.|.++.-.|.-+.+.+.|+
T Consensus 380 ~~~~r~ev~~lv~r~lq---Drss~VRrnaikl~SkLL~~HPF~~~h 423 (1128)
T COG5098 380 TVGRRHEVIRLVGRRLQ---DRSSVVRRNAIKLCSKLLMRHPFASEH 423 (1128)
T ss_pred ccchHHHHHHHHHHHhh---hhhHHHHHHHHHHHHHHHhcCChhhhc
Confidence 1223345554445454 777889999999999998888888888
No 250
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=87.16 E-value=11 Score=37.89 Aligned_cols=138 Identities=17% Similarity=0.170 Sum_probs=98.0
Q ss_pred hhHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHh-hCCCCHHHHHHHHHHHHHhhccCh
Q 017249 22 RKQALIEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLM-LVSPNLDAIESSLLALLNLAVRNE 100 (375)
Q Consensus 22 ~~~~~l~~Lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~-L~~~~~~~~~~a~~~L~~L~~~~~ 100 (375)
+....+|.|...+++.+...|..++..+..++.-- + ..+++.-++|.+-.+ +.+.+..++..++-++..+..
T Consensus 386 ~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~i-D---~~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q--- 458 (700)
T KOG2137|consen 386 VKEKILPLLYRSLEDSDVQIQELALQILPTVAESI-D---VPFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQ--- 458 (700)
T ss_pred HHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhc-c---HHHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHHH---
Confidence 45667778888888889999999999998887655 2 334555557776554 455678899999999999883
Q ss_pred hhHHHHHHcCChHHHHHhhcCCChHHHHHHHHHHHHhhccCCChhHHHhcCChHHHHHHhccCCHHH
Q 017249 101 RNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHSGSVQG 167 (375)
Q Consensus 101 ~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~l~~L~~lL~~~~~~~ 167 (375)
..+...-..-+.++.+..+..++.+....+.+..++.........+....++|.++.+...+....
T Consensus 459 -~lD~~~v~d~~lpi~~~~~~~dp~iv~~~~~i~~~l~~~~~~g~ev~~~~VlPlli~ls~~~~L~~ 524 (700)
T KOG2137|consen 459 -RLDKAAVLDELLPILKCIKTRDPAIVMGFLRIYEALALIIYSGVEVMAENVLPLLIPLSVAPSLNG 524 (700)
T ss_pred -HHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhcccceeeehhhhhhhhhhhhhcccccH
Confidence 222222223355666667778899988888888888877655445556788898888877665433
No 251
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=86.76 E-value=6.9 Score=42.67 Aligned_cols=144 Identities=10% Similarity=0.039 Sum_probs=95.4
Q ss_pred CChHHHHHhhCCCCHHHHHHHHHHHHHhhccChhhH-HHHHHcCChHHHHHhhcCCChHHHHHHHHHHHHhhccCCChhH
Q 017249 68 GVVQPLVLMLVSPNLDAIESSLLALLNLAVRNERNK-VKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPA 146 (375)
Q Consensus 68 g~v~~Lv~~L~~~~~~~~~~a~~~L~~L~~~~~~~r-~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~ 146 (375)
+.+..++..|..+...+|..|+++|.++..-++... ...+.. .+..-+.+.+..||+.|+..+.......+. .
T Consensus 816 ~yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL~~~dvq~----~Vh~R~~DssasVREAaldLvGrfvl~~~e--~ 889 (1692)
T KOG1020|consen 816 PYLKLILSVLGENAIALRTKALKCLSMIVEADPSVLSRPDVQE----AVHGRLNDSSASVREAALDLVGRFVLSIPE--L 889 (1692)
T ss_pred HHHHHHHHHhcCchHHHHHHHHHHHHHHHhcChHhhcCHHHHH----HHHHhhccchhHHHHHHHHHHhhhhhccHH--H
Confidence 457788888998889999999999999987655432 122222 334444566788999999999875443220 0
Q ss_pred HHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCCCCchhhhhcCCcHHHHHHhhhcccchH-HHHHHHHHHHHhhCC
Q 017249 147 IAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDCKKYSK-FAEKATALLEILSSS 224 (375)
Q Consensus 147 i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~-~~~~a~~~L~~l~~~ 224 (375)
.......+..-+.+....|+..+...++.+|...++-..+. ..++++++.-++.+. +++.+..++.++...
T Consensus 890 --~~qyY~~i~erIlDtgvsVRKRvIKIlrdic~e~pdf~~i~-----~~cakmlrRv~DEEg~I~kLv~etf~klWF~ 961 (1692)
T KOG1020|consen 890 --IFQYYDQIIERILDTGVSVRKRVIKILRDICEETPDFSKIV-----DMCAKMLRRVNDEEGNIKKLVRETFLKLWFT 961 (1692)
T ss_pred --HHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCChhhHH-----HHHHHHHHHhccchhHHHHHHHHHHHHHhcc
Confidence 11234556666667778889999999999987655444433 345666665443333 777777777777644
No 252
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=86.22 E-value=30 Score=32.59 Aligned_cols=208 Identities=17% Similarity=0.149 Sum_probs=103.3
Q ss_pred HHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCCC-----CHHHHHHHHHHHHHhhccChhhH---------HH
Q 017249 40 ETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSP-----NLDAIESSLLALLNLAVRNERNK---------VK 105 (375)
Q Consensus 40 ~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~~-----~~~~~~~a~~~L~~L~~~~~~~r---------~~ 105 (375)
.+|..++..+...+... ++.-..+.. ..+....++|.+- ...+...++..|..++. .+..+ ..
T Consensus 111 kvK~~i~~~~~ly~~kY-~e~f~~~l~-~fv~~vw~lL~~~~~~~~~D~lv~~al~FL~~v~~-~~~~~~lf~~~~~L~~ 187 (370)
T PF08506_consen 111 KVKAWICENLNLYAEKY-EEEFEPFLP-TFVQAVWNLLTKISQQPKYDILVSKALQFLSSVAE-SPHHKNLFENKPHLQQ 187 (370)
T ss_dssp HHHHHHHHHHHHHHHH--HHHHHHHHH-HHHHHHHHHHTC--SSGGGHHHHHHHHHHHHHHHT-SHHHHTTT-SHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHH-HHHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHc-chhHHHHhCCHHHHHH
Confidence 34555666776666655 333222221 3445555555432 24566678888877665 33333 22
Q ss_pred HHHcCChHHHH------Hhh------------c-CCChHHHHHHHHHHHHhhccCCChhHHHhcCChHHHHHHhc-----
Q 017249 106 IATAGAIPPLV------ELL------------K-FQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILH----- 161 (375)
Q Consensus 106 i~~~g~i~~Lv------~lL------------~-~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~l~~L~~lL~----- 161 (375)
+++.=++|.+. ++. + +....-|..|...|..|+..-+.. ...-....+-.++.
T Consensus 188 Iie~VI~Pnl~~~e~D~ElfEddP~EYIrrd~e~sd~~TrR~AA~dfl~~L~~~~~~~---v~~i~~~~i~~~l~~y~~~ 264 (370)
T PF08506_consen 188 IIEKVIFPNLCLREEDEELFEDDPEEYIRRDLEGSDSDTRRRAACDFLRSLCKKFEKQ---VTSILMQYIQQLLQQYASN 264 (370)
T ss_dssp HHHHTHHHHHS--HHHHHHHHHSHHHHHHHHSCSS---SHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH-
T ss_pred HHHHhccCccCCCHHHHHHHccCHHHHHHhhccccccCCcHHHHHHHHHHHHHHHhHH---HHHHHHHHHHHHHHHHhhC
Confidence 22222222221 111 1 112344677888888887542211 11111122233333
Q ss_pred -cCCHHHHHHHHHHHHHhccCCCCch-------------hhhhcCCcHHHHHHhhhcccchHHHHHHHHHHHHhhCChhh
Q 017249 162 -SGSVQGRVDAVTALHYLSTCKENSS-------------PILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEG 227 (375)
Q Consensus 162 -~~~~~~~~~a~~~L~~L~~~~~~~~-------------~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~~~~~ 227 (375)
+.+..-+..|+.++..|+....... .+...-++|.|. .+.+..+-++..|++.+..+... -.
T Consensus 265 ~~~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~v~~Ff~~~v~peL~---~~~~~~piLka~aik~~~~Fr~~-l~ 340 (370)
T PF08506_consen 265 PSNNWRSKDGALYLIGALASKGSTTKSGVTQTNELVDVVDFFSQHVLPELQ---PDVNSHPILKADAIKFLYTFRNQ-LP 340 (370)
T ss_dssp TTT-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS-HHHHHHHHTCHHHH----SS-S-HHHHHHHHHHHHHHGGG-S-
T ss_pred CcccHHHHHHHHHHHHHHHhhhccccCCcccccccccHHHHHHHHhHHHhc---ccCCCCcchHHHHHHHHHHHHhh-CC
Confidence 2356778889999999986543221 111222333332 12233445666666666655442 12
Q ss_pred hHHHhhccCcHHHHHHHhccCChHHHHHHHHHH
Q 017249 228 RIAITNSDGGILTLVETVEDGSLVSTQHAVGAL 260 (375)
Q Consensus 228 ~~~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L 260 (375)
...+. +.++.++.+|.+++..++.+|+.++
T Consensus 341 ~~~l~---~~~~~l~~~L~~~~~vv~tyAA~~i 370 (370)
T PF08506_consen 341 KEQLL---QIFPLLVNHLQSSSYVVHTYAAIAI 370 (370)
T ss_dssp HHHHH---HHHHHHHHHTTSS-HHHHHHHHHHH
T ss_pred HHHHH---HHHHHHHHHhCCCCcchhhhhhhhC
Confidence 22333 5899999999999998999988765
No 253
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=86.21 E-value=7 Score=30.83 Aligned_cols=75 Identities=17% Similarity=0.105 Sum_probs=60.7
Q ss_pred hHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCCCC--HHHHHHHHHHHHHhhc
Q 017249 23 KQALIEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPN--LDAIESSLLALLNLAV 97 (375)
Q Consensus 23 ~~~~l~~Lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~~~--~~~~~~a~~~L~~L~~ 97 (375)
..+++..|-..|+++++.++..|+..|-.+..+..+.....+.+.+++..|+.++++.. +.++..++..+...+.
T Consensus 35 ~k~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~ 111 (133)
T smart00288 35 PKDAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWAD 111 (133)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHH
Confidence 35677888888999999999999999999998863456666777889999999987753 3488888888888775
No 254
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=86.13 E-value=35 Score=34.25 Aligned_cols=168 Identities=8% Similarity=0.098 Sum_probs=93.7
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHhhccChhhHHHHHH----cCChHHHHHhhcCCChHHHHHHHHHHHHhhccCCChhHHH
Q 017249 73 LVLMLVSPNLDAIESSLLALLNLAVRNERNKVKIAT----AGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIA 148 (375)
Q Consensus 73 Lv~~L~~~~~~~~~~a~~~L~~L~~~~~~~r~~i~~----~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~ 148 (375)
.+..+-.-..+.+--|+.+|+.+..+.. .-..++. ...+..++..+. .++.-+..++++|.|+..++.++..+.
T Consensus 549 ~l~~l~~wp~~~~fPalDilRl~v~h~~-~~s~~~~~~~~~~~~~~li~~~~-~~~an~ll~vR~L~N~f~~~~g~~~~~ 626 (745)
T KOG0301|consen 549 ALAILLQWPVEMMFPALDILRLAVKHHS-SNSLFCDREEGQNLVGTLIPILN-ADPANQLLVVRCLANLFSNPAGRELFM 626 (745)
T ss_pred HHHHHhcCCHHHhhhHHHHHHHHHhccc-hhhhhhhhhhhhHHHHhhhcccc-cchhHHHHHHHHHHHhccCHHHHHHHH
Confidence 3444445566778888888888887433 3333332 234445555554 557777899999999999877777665
Q ss_pred hc--CChHHHHHHhccCCHHHHHHHHHHHHHhccC--CCCchhhhhcCCcHHHHHHhhhcccc-hH--HHHHHHHHHHHh
Q 017249 149 AS--GAAPLLVQILHSGSVQGRVDAVTALHYLSTC--KENSSPILDATAVPPLINLLKDCKKY-SK--FAEKATALLEIL 221 (375)
Q Consensus 149 ~~--~~l~~L~~lL~~~~~~~~~~a~~~L~~L~~~--~~~~~~i~~~g~i~~Lv~ll~~~~~~-~~--~~~~a~~~L~~l 221 (375)
.. -.+..+...=..++..++...+....|++.. ..+-+ .++.+.|...+....++ +. ..-..+-+|.+|
T Consensus 627 s~~~~i~~~~~~~~s~~~knl~ia~atlaln~sv~l~~~~~~----~~~~~~l~~ai~~~~e~~~d~EA~yR~l~AlgtL 702 (745)
T KOG0301|consen 627 SRLESILDPVIEASSLSNKNLQIALATLALNYSVLLIQDNEQ----LEGKEVLLSAISTLLEPVDDLEAIYRLLVALGTL 702 (745)
T ss_pred HHHHHHhhhhhhhhcccchhHHHHHHHHHHHHHHHHHhcccc----cchHHHHHHHHHhhcccchhHHHHHHHHHHHHhh
Confidence 33 2222233222223344544444444455421 11111 35555555555432211 11 122345667788
Q ss_pred hCChhhhHHHhhccCcHHHHHHHhcc
Q 017249 222 SSSEEGRIAITNSDGGILTLVETVED 247 (375)
Q Consensus 222 ~~~~~~~~~~~~~~g~v~~Lv~lL~~ 247 (375)
+..+....++.. .-.+..++.-+++
T Consensus 703 ~t~~~~~~~~A~-~~~v~sia~~~~~ 727 (745)
T KOG0301|consen 703 MTVDASVIQLAK-NRSVDSIAKKLKE 727 (745)
T ss_pred ccccHHHHHHHH-hcCHHHHHHHHHH
Confidence 888877777773 4567778777754
No 255
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=86.05 E-value=7.7 Score=31.70 Aligned_cols=145 Identities=13% Similarity=0.097 Sum_probs=79.6
Q ss_pred HhHHHHHHHHhcC-CCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhccChhh
Q 017249 24 QALIEELSDKLIN-GDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIESSLLALLNLAVRNERN 102 (375)
Q Consensus 24 ~~~l~~Lv~~L~s-~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~~~~~~~~~a~~~L~~L~~~~~~~ 102 (375)
-..++.|++.|+. .++.++.++++.|+.+-.=+ | .+....+.+ .+.-. -............. ..... ..
T Consensus 9 P~LL~~L~~iLk~e~s~~iR~E~lr~lGilGALD-P-~~~k~~~~~-~~~~~--~~~~~~~~~~~~l~-~~~~~----~~ 78 (160)
T PF11865_consen 9 PELLDILLNILKTEQSQSIRREALRVLGILGALD-P-YKHKSIQKS-LDSKS--SENSNDESTDISLP-MMGIS----PS 78 (160)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHhhhccccC-c-HHHhccccc-CCccc--cccccccchhhHHh-hccCC----Cc
Confidence 4567778888874 46899999999999987666 2 332221111 11000 00111111111111 11121 12
Q ss_pred HHHHHHcCChHHHHHhhcCCC-hHHHHHHHHHHHHhhccCCChhHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHh
Q 017249 103 KVKIATAGAIPPLVELLKFQN-GTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYL 178 (375)
Q Consensus 103 r~~i~~~g~i~~Lv~lL~~~~-~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~~L 178 (375)
-+..+-..++..|+..|++++ ..-+..++.++.++......+..-.-...+|.++..++..+...++....-|..|
T Consensus 79 ~ee~y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L~~viP~~l~~i~~~~~~~~e~~~~qL~~l 155 (160)
T PF11865_consen 79 SEEYYPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYLPQVIPIFLRVIRTCPDSLREFYFQQLADL 155 (160)
T ss_pred hHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHHHHHhHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 233334446678888888774 3334567777777764433333222356789999999877767677666655554
No 256
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=85.88 E-value=24 Score=31.13 Aligned_cols=151 Identities=15% Similarity=0.112 Sum_probs=86.7
Q ss_pred cCChHHHHHhhcCC-----------ChHHHHHHHHHHHHhhccCCChhHHHhcCChHHHHHHhccCCHH--------HHH
Q 017249 109 AGAIPPLVELLKFQ-----------NGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHSGSVQ--------GRV 169 (375)
Q Consensus 109 ~g~i~~Lv~lL~~~-----------~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~l~~L~~lL~~~~~~--------~~~ 169 (375)
...+|.|+.+|... +.....+|+..|..+ .+..+++.++++++.++.. +..
T Consensus 30 e~i~P~Ll~~Le~a~~~~~e~~~~~~~~~~~~a~~LLaq~----------re~~A~~~li~l~~~~~~~~~~l~GD~~tE 99 (249)
T PF06685_consen 30 EEITPELLKILEDAIERANELLDDEEYNLHFYALYLLAQF----------REERALPPLIRLFSQDDDFLEDLFGDFITE 99 (249)
T ss_pred HHhhHHHHHHHHHHHHhHHHhccCcchHHHHHHHHHHHHH----------hhhhhHHHHHHHHcCCcchHHHHHcchhHh
Confidence 34577777777542 122233444444443 4567899999999766531 111
Q ss_pred HHHHHHHHhccCCCCchhhhhcCCcHHHHHHhhhcccchHHHHHHHHHHHHhhC-ChhhhHHHhhccCcHHHHHHH-hcc
Q 017249 170 DAVTALHYLSTCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSS-SEEGRIAITNSDGGILTLVET-VED 247 (375)
Q Consensus 170 ~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~-~~~~~~~~~~~~g~v~~Lv~l-L~~ 247 (375)
....++.. +..|-++.|.+++.++..+.-++.+|+.+|..++. ++..|..++ ..+..++.. +..
T Consensus 100 ~l~~ilas-----------v~~G~~~~L~~li~~~~~~~yvR~aa~~aL~~l~~~~~~~Re~vi---~~f~~ll~~~l~~ 165 (249)
T PF06685_consen 100 DLPRILAS-----------VGDGDIEPLKELIEDPDADEYVRMAAISALAFLVHEGPISREEVI---QYFRELLNYFLER 165 (249)
T ss_pred HHHHHHHH-----------HhCCCHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHcCCCCHHHHH---HHHHHHHHHHhcc
Confidence 12222222 33567888888888877677788889999998886 566677776 366666655 544
Q ss_pred CChHHHHHHHHHHHHhcccCcHHHHHHHHHcCChHH
Q 017249 248 GSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPG 283 (375)
Q Consensus 248 ~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~g~v~~ 283 (375)
....+-..-+..++.|....--...+.+.+.|.|+.
T Consensus 166 ~~~~~~~~Lv~~~~dL~~~EL~~~I~~~f~~~lVd~ 201 (249)
T PF06685_consen 166 NPSFLWGSLVADICDLYPEELLPEIRKAFEDGLVDP 201 (249)
T ss_pred CchHHHHHHHHHHHhcCHHHhHHHHHHHHHcCCCCc
Confidence 333333333444444433221123444556777755
No 257
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=85.85 E-value=43 Score=33.96 Aligned_cols=226 Identities=22% Similarity=0.179 Sum_probs=113.4
Q ss_pred hHHHHHhhCCCCHHHHHHHHHHHHHhhccChhhHHHH----HHcC---ChHHHHHhhcCCChHHHHHHHHHHHHhhccCC
Q 017249 70 VQPLVLMLVSPNLDAIESSLLALLNLAVRNERNKVKI----ATAG---AIPPLVELLKFQNGTLRELAAAAILTLSAAAP 142 (375)
Q Consensus 70 v~~Lv~~L~~~~~~~~~~a~~~L~~L~~~~~~~r~~i----~~~g---~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~ 142 (375)
+-.|+..|+.-+.+-......-+..-. .....|..+ ...| ++..+.+++.+....- ..+...|..+.....
T Consensus 349 f~~Lv~~lr~l~~~~L~~l~~~~~~~~-~~~~~r~~~lDal~~aGT~~av~~i~~~I~~~~~~~-~ea~~~l~~l~~~~~ 426 (618)
T PF01347_consen 349 FSRLVRLLRTLSYEDLEELYKQLKSKS-KKEQARKIFLDALPQAGTNPAVKFIKDLIKSKKLTD-DEAAQLLASLPFHVR 426 (618)
T ss_dssp HHHHHHHHTTS-HHHHHHHHHHHTTS----HHHHHHHHHHHHHH-SHHHHHHHHHHHHTT-S-H-HHHHHHHHHHHHT--
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhc-cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCH-HHHHHHHHHHHhhcC
Confidence 445566666554443333333332221 112333333 3333 3566677776653332 235566666654321
Q ss_pred ChhHHHhcCChHHHHHHhccC----CHHHHHHHHHHHHHhcc----CC------CCchhhhhcCCcHHHHHHhhhc--cc
Q 017249 143 NKPAIAASGAAPLLVQILHSG----SVQGRVDAVTALHYLST----CK------ENSSPILDATAVPPLINLLKDC--KK 206 (375)
Q Consensus 143 ~~~~i~~~~~l~~L~~lL~~~----~~~~~~~a~~~L~~L~~----~~------~~~~~i~~~g~i~~Lv~ll~~~--~~ 206 (375)
. -....+..+..+++++ ++.+...|+.++..|.. .. ..+........++.+...+... ..
T Consensus 427 ~----Pt~e~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 502 (618)
T PF01347_consen 427 R----PTEELLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRG 502 (618)
T ss_dssp -------HHHHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT-----------SS--GGGTHHHHHHHHHHHHTT
T ss_pred C----CCHHHHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeecccccccccccchhhHHHHHHHHHHHHHHHhhcc
Confidence 0 0123456666676543 45667777767666642 21 1122223345677777777632 11
Q ss_pred chHHHHHHHHHHHHhhCChhhhHHHhhccCcHHHHHHHhccC---ChHHHHHHHHHHHHhcccCcHHHHHHHHHcCChHH
Q 017249 207 YSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDG---SLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPG 283 (375)
Q Consensus 207 ~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~---~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~g~v~~ 283 (375)
+..-+..++.+|+|+- ....++.|..++... +..+|..|+++|..++...+.. +.+.
T Consensus 503 ~~~~~~~~LkaLgN~g-----------~~~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~~~~---------v~~~ 562 (618)
T PF01347_consen 503 DEEEKIVYLKALGNLG-----------HPESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHCPEK---------VREI 562 (618)
T ss_dssp -HHHHHHHHHHHHHHT------------GGGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT-HHH---------HHHH
T ss_pred CHHHHHHHHHHhhccC-----------CchhhHHHHhHhhhccccchHHHHHHHHHHHHHhhcCcHH---------HHHH
Confidence 2234566889999884 345777888888665 5788999999999886665222 3355
Q ss_pred HHHHhhh--CCHHHHHHHHHHHHHhhcCChhhhhhhhhHHHHHHHHh
Q 017249 284 LLRLTVE--GTFEAQERARTLLDLLRDTPQEKRLSSSVLEKIVYDIA 328 (375)
Q Consensus 284 L~~ll~~--~~~~~~~~A~~~L~~l~~~~~~~~~~~g~~~~l~~~l~ 328 (375)
|+.++.+ .++++|-.|..+|-. .+++ ...+..+...+.
T Consensus 563 l~~I~~n~~e~~EvRiaA~~~lm~--~~P~-----~~~l~~i~~~l~ 602 (618)
T PF01347_consen 563 LLPIFMNTTEDPEVRIAAYLILMR--CNPS-----PSVLQRIAQSLW 602 (618)
T ss_dssp HHHHHH-TTS-HHHHHHHHHHHHH--T--------HHHHHHHHHHHT
T ss_pred HHHHhcCCCCChhHHHHHHHHHHh--cCCC-----HHHHHHHHHHHh
Confidence 6676664 457777777654433 4342 235555555554
No 258
>KOG4464 consensus Signaling protein RIC-8/synembryn (regulates neurotransmitter secretion) [Signal transduction mechanisms]
Probab=85.83 E-value=32 Score=32.50 Aligned_cols=83 Identities=14% Similarity=0.151 Sum_probs=60.0
Q ss_pred CHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCCC-----CHHHHHHHHHHHHHhhccChhhHHHHH-HcCC
Q 017249 38 DLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSP-----NLDAIESSLLALLNLAVRNERNKVKIA-TAGA 111 (375)
Q Consensus 38 ~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~~-----~~~~~~~a~~~L~~L~~~~~~~r~~i~-~~g~ 111 (375)
+.++..+|+++|.|+...+ ...+..+.+......+++++... .-++...=++.|.-++.-....|.++. +.+|
T Consensus 110 d~~vi~EslKCLcNlvf~S-q~~q~~~~~~~~~~~ll~~v~~~~er~~~~~~~~~dlrLLflltale~~~Rsql~~~l~G 188 (532)
T KOG4464|consen 110 DMHVIMESLKCLCNLVFHS-QRAQDLFLENPLTGKLLQRVLGEFERNFPKDSSIFDLRLLFLLTALETDHRSQLIAELLG 188 (532)
T ss_pred chHHHHHHHHHHHHHHhcc-HHHHHHHHhhhhHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHhhHHHHHHHHHHhcc
Confidence 4578899999999999998 88899998888888887776332 123344445555555544556776655 5899
Q ss_pred hHHHHHhhcC
Q 017249 112 IPPLVELLKF 121 (375)
Q Consensus 112 i~~Lv~lL~~ 121 (375)
++.+-..+++
T Consensus 189 l~~lt~~led 198 (532)
T KOG4464|consen 189 LELLTNWLED 198 (532)
T ss_pred cHHHHHHhhc
Confidence 9999988864
No 259
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=85.71 E-value=3.7 Score=32.43 Aligned_cols=73 Identities=14% Similarity=0.155 Sum_probs=59.7
Q ss_pred CcHHHHHHHhccCChHHHHHHHHHHHHhcccCcHHHHHHHHHcCChHHHHHHhhhCC--HHHHHHHHHHHHHhhc
Q 017249 236 GGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGT--FEAQERARTLLDLLRD 308 (375)
Q Consensus 236 g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~g~v~~L~~ll~~~~--~~~~~~A~~~L~~l~~ 308 (375)
.++..|-.-|.++++.++..|+.+|-.+..+++......+.+.+++..|+.++.... +.+++.+..++..-..
T Consensus 37 ~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~ 111 (133)
T smart00288 37 DAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWAD 111 (133)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHH
Confidence 356667788889999999999999999999877777888888899999999887542 4489998888776654
No 260
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=85.23 E-value=44 Score=33.56 Aligned_cols=209 Identities=18% Similarity=0.056 Sum_probs=110.6
Q ss_pred ChHHHHHhhCCCCHHHHHHHHHHHHHhhccChhh----HHHHHHcC---ChHHHHHhhcCCChHHHHHHHHHHHHhhcc-
Q 017249 69 VVQPLVLMLVSPNLDAIESSLLALLNLAVRNERN----KVKIATAG---AIPPLVELLKFQNGTLRELAAAAILTLSAA- 140 (375)
Q Consensus 69 ~v~~Lv~~L~~~~~~~~~~a~~~L~~L~~~~~~~----r~~i~~~g---~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~- 140 (375)
.+-.|+.+|+.-+.+-......-+.. .. ... .+.+...| .+..+.+.+.+....- ..++.++..+...
T Consensus 312 ~f~~lv~~lR~~~~e~l~~l~~~~~~-~~--~~~r~~~~Dal~~~GT~~a~~~i~~~i~~~~~~~-~ea~~~~~~~~~~~ 387 (574)
T smart00638 312 KFLRLVRLLRTLSEEQLEQLWRQLYE-KK--KKARRIFLDAVAQAGTPPALKFIKQWIKNKKITP-LEAAQLLAVLPHTA 387 (574)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHh-CC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCH-HHHHHHHHHHHHhh
Confidence 34556777766665555555444433 11 223 33344433 3556666666653221 1222333332221
Q ss_pred CCChhHHHhcCChHHHHHHhccC----CHHHHHHHHHHHHHhcc----CCCCchhhhhcCCcHHHHHHhhhcc--cchHH
Q 017249 141 APNKPAIAASGAAPLLVQILHSG----SVQGRVDAVTALHYLST----CKENSSPILDATAVPPLINLLKDCK--KYSKF 210 (375)
Q Consensus 141 ~~~~~~i~~~~~l~~L~~lL~~~----~~~~~~~a~~~L~~L~~----~~~~~~~i~~~g~i~~Lv~ll~~~~--~~~~~ 210 (375)
... ....++.+.+++.++ +..+...|+.++.+|.. ..+.+...+-...++.+...+.... .+..-
T Consensus 388 ~~P-----t~~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ 462 (574)
T smart00638 388 RYP-----TEEILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEE 462 (574)
T ss_pred hcC-----CHHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchh
Confidence 110 134567788888764 34566666666666642 2332222222346666666665421 12222
Q ss_pred HHHHHHHHHHhhCChhhhHHHhhccCcHHHHHHHhc-c--CChHHHHHHHHHHHHhcccCcHHHHHHHHHcCChHHHHHH
Q 017249 211 AEKATALLEILSSSEEGRIAITNSDGGILTLVETVE-D--GSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRL 287 (375)
Q Consensus 211 ~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~Lv~lL~-~--~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~g~v~~L~~l 287 (375)
....+.+|+|+- ....++.+..++. + .+..+|..|+++|..++...+.. +-+.|+.+
T Consensus 463 ~~~~LkaLGN~g-----------~~~~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~~---------v~~~l~~i 522 (574)
T smart00638 463 IQLYLKALGNAG-----------HPSSIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPRK---------VQEVLLPI 522 (574)
T ss_pred eeeHHHhhhccC-----------ChhHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCchH---------HHHHHHHH
Confidence 345677788774 3455666677775 2 34679999999999887654322 33456665
Q ss_pred hhh--CCHHHHHHHHHHHHHh
Q 017249 288 TVE--GTFEAQERARTLLDLL 306 (375)
Q Consensus 288 l~~--~~~~~~~~A~~~L~~l 306 (375)
+.+ .++++|-.|..+|-.+
T Consensus 523 ~~n~~e~~EvRiaA~~~lm~t 543 (574)
T smart00638 523 YLNRAEPPEVRMAAVLVLMET 543 (574)
T ss_pred HcCCCCChHHHHHHHHHHHhc
Confidence 554 4677777776655443
No 261
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=85.07 E-value=4.3 Score=31.44 Aligned_cols=73 Identities=11% Similarity=0.156 Sum_probs=54.6
Q ss_pred cHHHHHHHhccCChHHHHHHHHHHHHhcccCcHHHHHHHHH-cCChHHHHHHhhhC--------CHHHHHHHHHHHHHhh
Q 017249 237 GILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILK-EGAIPGLLRLTVEG--------TFEAQERARTLLDLLR 307 (375)
Q Consensus 237 ~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~-~g~v~~L~~ll~~~--------~~~~~~~A~~~L~~l~ 307 (375)
+...|..-|.+.++.++..++.+|..+|..+.+..+..+.+ ...|..+.++-... ...||..|-.++..+-
T Consensus 39 i~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~f~~~~~~~~~~Ik~~~~f~g~~Dp~~Gd~~~~~VR~~A~El~~~if 118 (122)
T cd03572 39 LLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSDFKRELQRNSAQIRECANYKGPPDPLKGDSLNEKVREEAQELIKAIF 118 (122)
T ss_pred HHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHHHHHHHHHhHHHHHHHHHcCCCCCcccCcchhHHHHHHHHHHHHHHh
Confidence 55677788888889999999999999999887777766665 45666666654422 2568888888888775
Q ss_pred cC
Q 017249 308 DT 309 (375)
Q Consensus 308 ~~ 309 (375)
..
T Consensus 119 ~~ 120 (122)
T cd03572 119 SY 120 (122)
T ss_pred cc
Confidence 43
No 262
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=85.07 E-value=4.2 Score=32.36 Aligned_cols=73 Identities=16% Similarity=0.226 Sum_probs=59.3
Q ss_pred CcHHHHHHHhccCChHHHHHHHHHHHHhcccCcHHHHHHHHHcCChHHHHHHhhhC-CHH---HHHHHHHHHHHhhc
Q 017249 236 GGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEG-TFE---AQERARTLLDLLRD 308 (375)
Q Consensus 236 g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~g~v~~L~~ll~~~-~~~---~~~~A~~~L~~l~~ 308 (375)
.++..|-.-|.++++.++..|+.+|..+..++++.....+.+..++..|..++.+. ... |++.+..++...+.
T Consensus 42 ea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~ 118 (140)
T PF00790_consen 42 EAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWAE 118 (140)
T ss_dssp HHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHH
Confidence 35667778888999999999999999999988777778887888999999988754 333 89999888876654
No 263
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=83.87 E-value=31 Score=30.75 Aligned_cols=177 Identities=16% Similarity=0.132 Sum_probs=101.0
Q ss_pred CChHHHHHhhcCC--ChHHHHHHHHHHHHhhccCCC--------hhHHHhcCChHHHHHHhccCC----HHHHHHHHHHH
Q 017249 110 GAIPPLVELLKFQ--NGTLRELAAAAILTLSAAAPN--------KPAIAASGAAPLLVQILHSGS----VQGRVDAVTAL 175 (375)
Q Consensus 110 g~i~~Lv~lL~~~--~~~~~~~a~~~L~~Ls~~~~~--------~~~i~~~~~l~~L~~lL~~~~----~~~~~~a~~~L 175 (375)
|.++-+..++-.+ ++...+.++..|..|...+.. +-.+.-...+|.++.-+.+++ .......+..|
T Consensus 60 ~~f~Glq~Ll~KGL~Ss~t~e~tl~lL~~L~~~~~~~lig~~~~rll~~~la~LP~ll~~~d~~~~i~~~~~~~~~A~~L 139 (262)
T PF14225_consen 60 GNFEGLQPLLLKGLRSSSTYELTLRLLSRLTPLPDDPLIGDSQSRLLFLLLALLPRLLHAFDDPNPIQPDQECIEIAEAL 139 (262)
T ss_pred CCchhHHHHHhCccCCCCcHHHHHHHHHHHhcCCCccccCCCCccHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHH
Confidence 5566666666444 566677888888888755332 222223456777777777776 13455666777
Q ss_pred HHhccCCCCchhhhhcCCcHHHHHHhhhccc--chHHHHHHHHHHHHhhCChhhhHHHhhccCcHHHHHHHhccCChHHH
Q 017249 176 HYLSTCKENSSPILDATAVPPLINLLKDCKK--YSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVST 253 (375)
Q Consensus 176 ~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~~~--~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~ 253 (375)
..+|.... .+.+..++.....+.. ..+....++..|+.-. .|+. +...+..|+++|.++.+.++
T Consensus 140 a~~a~~~~-------~~~La~il~~ya~~~fr~~~dfl~~v~~~l~~~f-~P~~------~~~~l~~Ll~lL~n~~~w~~ 205 (262)
T PF14225_consen 140 AQVAEAQG-------LPNLARILSSYAKGRFRDKDDFLSQVVSYLREAF-FPDH------EFQILTFLLGLLENGPPWLR 205 (262)
T ss_pred HHHHHhCC-------CccHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHh-Cchh------HHHHHHHHHHHHhCCcHHHH
Confidence 77773311 1223333333333322 1122233333333211 1222 12455678899999999999
Q ss_pred HHHHHHHHHhcccCcHHHHHHHHHcCChHHHHHHhhhCCHHHHHHHHHHHHHh
Q 017249 254 QHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLL 306 (375)
Q Consensus 254 ~~a~~~L~~l~~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~~~~~A~~~L~~l 306 (375)
...+.+|..+-...+ .+.. ...+.+.+|.++++++ -...|..+|...
T Consensus 206 ~~~L~iL~~ll~~~d--~~~~-~~~dlispllrlL~t~---~~~eAL~VLd~~ 252 (262)
T PF14225_consen 206 RKTLQILKVLLPHVD--MRSP-HGADLISPLLRLLQTD---LWMEALEVLDEI 252 (262)
T ss_pred HHHHHHHHHHhcccc--CCCC-cchHHHHHHHHHhCCc---cHHHHHHHHHHH
Confidence 999999999877652 2222 3455788888888744 234455555544
No 264
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=83.15 E-value=18 Score=35.60 Aligned_cols=122 Identities=21% Similarity=0.212 Sum_probs=80.2
Q ss_pred cCChHHHHHh-hCCCCHHHHHHHHHHHHHhhccChhhHHHHHHcCChHHHHHhhc-CCChHHHHHHHHHHHHhhccCCCh
Q 017249 67 AGVVQPLVLM-LVSPNLDAIESSLLALLNLAVRNERNKVKIATAGAIPPLVELLK-FQNGTLRELAAAAILTLSAAAPNK 144 (375)
Q Consensus 67 ~g~v~~Lv~~-L~~~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~-~~~~~~~~~a~~~L~~Ls~~~~~~ 144 (375)
.|++..|+.. .++.+.+++..|+-+|+-.|.+++. .++..+++|. +.++-+|...+-+|.-.+.....+
T Consensus 550 ~~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D~~---------~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~~ 620 (926)
T COG5116 550 LGVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDDRD---------LLVGTVELLSESHNFHVRAGVAVALGIACAGTGDK 620 (926)
T ss_pred chhHhhhheeecccCchHHHHHHHHheeeeEecCcc---------hhhHHHHHhhhccchhhhhhhHHHhhhhhcCCccH
Confidence 4567777776 6777889999999999998886542 3445566664 457888877777777665543322
Q ss_pred hHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhcc-C-CCCchhhhhcCCcHHHHHHhhhcc
Q 017249 145 PAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLST-C-KENSSPILDATAVPPLINLLKDCK 205 (375)
Q Consensus 145 ~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~~L~~-~-~~~~~~i~~~g~i~~Lv~ll~~~~ 205 (375)
-+++.|-.+..+.+.-+++.|+-++.-+.. . ++.-..+ .+.+..+.+++.+..
T Consensus 621 ------~a~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q~n~~Lnp~v--~~I~k~f~~vI~~Kh 675 (926)
T COG5116 621 ------VATDILEALMYDTNDFVRQSAMIAVGMILMQCNPELNPNV--KRIIKKFNRVIVDKH 675 (926)
T ss_pred ------HHHHHHHHHhhCcHHHHHHHHHHHHHHHHhhcCcccChhH--HHHHHHHHHHHhhhh
Confidence 235666677778888889999888876653 2 2211111 245566666666543
No 265
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=83.01 E-value=13 Score=30.37 Aligned_cols=145 Identities=17% Similarity=0.104 Sum_probs=80.9
Q ss_pred cCChHHHHHHhccC-CHHHHHHHHHHHHHhccCCCCchhhhhcCCcHHHHHHhhhcccchHHHHHHHHHHHHhhCChhhh
Q 017249 150 SGAAPLLVQILHSG-SVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGR 228 (375)
Q Consensus 150 ~~~l~~L~~lL~~~-~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~~~~~~ 228 (375)
+..++.|+.+|+.+ +..++..++.+|..|-.-++.+......+.- ....... ...... ..+.+....+. .
T Consensus 9 P~LL~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k~~~~~~~----~~~~~~~-~~~~~~---~~l~~~~~~~~-~ 79 (160)
T PF11865_consen 9 PELLDILLNILKTEQSQSIRREALRVLGILGALDPYKHKSIQKSLD----SKSSENS-NDESTD---ISLPMMGISPS-S 79 (160)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHhcccccCC----ccccccc-cccchh---hHHhhccCCCc-h
Confidence 45677888888877 5789999999999997665554443221111 0000000 111111 11111111111 1
Q ss_pred HHHhhccCcHHHHHHHhccCC-hHHHHHHHHHHHHhcccCcHHHHHHHHHcCChHHHHHHhhhCCHHHHHHHHHHHHHh
Q 017249 229 IAITNSDGGILTLVETVEDGS-LVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLL 306 (375)
Q Consensus 229 ~~~~~~~g~v~~Lv~lL~~~~-~~~~~~a~~~L~~l~~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~~~~~A~~~L~~l 306 (375)
.... ...++..|+..|++.+ ..-...++.++.++....+..+...+ ..++|.++..++..++..+|.-..-|+.+
T Consensus 80 ee~y-~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L--~~viP~~l~~i~~~~~~~~e~~~~qL~~l 155 (160)
T PF11865_consen 80 EEYY-PTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYL--PQVIPIFLRVIRTCPDSLREFYFQQLADL 155 (160)
T ss_pred HHHH-HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHH--HHHhHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 1111 2346778888888765 33444667777666644322322222 56899999999988888888766666554
No 266
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=82.77 E-value=16 Score=36.75 Aligned_cols=131 Identities=21% Similarity=0.152 Sum_probs=76.1
Q ss_pred hHHHHHhhCCC----CHHHHHHHHHHHHHhhcc----ChhhHHHHHHcCChHHHHHhhcC----CChHHHHHHHHHHHHh
Q 017249 70 VQPLVLMLVSP----NLDAIESSLLALLNLAVR----NERNKVKIATAGAIPPLVELLKF----QNGTLRELAAAAILTL 137 (375)
Q Consensus 70 v~~Lv~~L~~~----~~~~~~~a~~~L~~L~~~----~~~~r~~i~~~g~i~~Lv~lL~~----~~~~~~~~a~~~L~~L 137 (375)
+..+.+++.++ .+.++..++-+++.+... .+.+. ..+....++.|...|.. .+.+-+...+.+|.|+
T Consensus 395 l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~-~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~ 473 (574)
T smart00638 395 LKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCP-DFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGNA 473 (574)
T ss_pred HHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCC-hhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhcc
Confidence 56666777653 355666666666666531 11111 11223355666665532 3444556677778877
Q ss_pred hccCCChhHHHhcCChHHHHHHhc-cC--CHHHHHHHHHHHHHhccCCCCchhhhhcCCcHHHHHHhhhcccchHHHHHH
Q 017249 138 SAAAPNKPAIAASGAAPLLVQILH-SG--SVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDCKKYSKFAEKA 214 (375)
Q Consensus 138 s~~~~~~~~i~~~~~l~~L~~lL~-~~--~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a 214 (375)
. ....++.|...+. .. +..++..|+++|..++.... ..+-+.|+.++.+...+..++..|
T Consensus 474 g----------~~~~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p-------~~v~~~l~~i~~n~~e~~EvRiaA 536 (574)
T smart00638 474 G----------HPSSIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDP-------RKVQEVLLPIYLNRAEPPEVRMAA 536 (574)
T ss_pred C----------ChhHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCc-------hHHHHHHHHHHcCCCCChHHHHHH
Confidence 3 3455666776665 22 46789999999998874321 124456777777766666777555
Q ss_pred HHHH
Q 017249 215 TALL 218 (375)
Q Consensus 215 ~~~L 218 (375)
..+|
T Consensus 537 ~~~l 540 (574)
T smart00638 537 VLVL 540 (574)
T ss_pred HHHH
Confidence 4433
No 267
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=82.26 E-value=17 Score=35.76 Aligned_cols=124 Identities=17% Similarity=0.170 Sum_probs=76.3
Q ss_pred cCChHHHHHH-hccCCHHHHHHHHHHHHHhccCCCCchhhhhcCCcHHHHHHhhhcccchHHHHHHHHHHHHhhCChhhh
Q 017249 150 SGAAPLLVQI-LHSGSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGR 228 (375)
Q Consensus 150 ~~~l~~L~~l-L~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~~~~~~ 228 (375)
.+++..|++. ..+.+..+++.|.-+|.-+|..+. ..++..+++|..+. +..++....-+|+..|...-.+
T Consensus 550 ~~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D~--------~~lv~tvelLs~sh-N~hVR~g~AvaLGiacag~G~~ 620 (926)
T COG5116 550 LGVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDDR--------DLLVGTVELLSESH-NFHVRAGVAVALGIACAGTGDK 620 (926)
T ss_pred chhHhhhheeecccCchHHHHHHHHheeeeEecCc--------chhhHHHHHhhhcc-chhhhhhhHHHhhhhhcCCccH
Confidence 4566777776 677788999999999888775432 35556667776643 4455554555565444432211
Q ss_pred HHHhhccCcHHHHHHHhccCChHHHHHHHHHHHHhcccCcHHHHHHHHHcCChHHHHHHhhhC
Q 017249 229 IAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEG 291 (375)
Q Consensus 229 ~~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~g~v~~L~~ll~~~ 291 (375)
-+++.|-.+..+..+-+|+.|+.++..+...++++.-..+ .++...+.+++.+.
T Consensus 621 -------~a~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q~n~~Lnp~v--~~I~k~f~~vI~~K 674 (926)
T COG5116 621 -------VATDILEALMYDTNDFVRQSAMIAVGMILMQCNPELNPNV--KRIIKKFNRVIVDK 674 (926)
T ss_pred -------HHHHHHHHHhhCcHHHHHHHHHHHHHHHHhhcCcccChhH--HHHHHHHHHHHhhh
Confidence 2344555666788888999999888877665544322211 34555566655543
No 268
>KOG1848 consensus Uncharacterized conserved protein [Function unknown]
Probab=82.13 E-value=20 Score=38.99 Aligned_cols=99 Identities=11% Similarity=0.047 Sum_probs=51.1
Q ss_pred CCChHHHHHHHHHHHHhhccCCChhHHHhcCChHHHHHHhc----cC---CHHHHHHHHHHHHHhccCC-CCchhhhhcC
Q 017249 121 FQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILH----SG---SVQGRVDAVTALHYLSTCK-ENSSPILDAT 192 (375)
Q Consensus 121 ~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~l~~L~~lL~----~~---~~~~~~~a~~~L~~L~~~~-~~~~~i~~~g 192 (375)
++..+++.....++.++...+..... .| .+-+.++++ .. ...+.+.+..+|.-++.+- .....=.-.+
T Consensus 853 ~~~~evr~~sl~~l~silet~ge~ll---~~-w~sV~eml~s~~d~~~ekek~ivrlgf~~lrlIssDfLqSLp~sci~~ 928 (1610)
T KOG1848|consen 853 SRGVEVRISSLEALVSILETVGEHLL---HG-WQSVFEMLRSATDFGSEKEKKIVRLGFSCLRLISSDFLQSLPTSCILD 928 (1610)
T ss_pred CccceeeHHHHHHHHHHHhccchhhc---cc-cHHHHHHHHHHhhccchhhhhHHHhhhhhhhhhhhcchhcCChHHHHH
Confidence 34567777778888887665432211 12 444445443 22 2345566666666655441 1111111124
Q ss_pred CcHHHHHHhhhcccchHHHHHHHHHHHHhhCC
Q 017249 193 AVPPLINLLKDCKKYSKFAEKATALLEILSSS 224 (375)
Q Consensus 193 ~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~~ 224 (375)
.+..++...+... +..+...|.+.+++++..
T Consensus 929 lidtl~~fs~Qkt-dlNISltAi~lfWtvsDf 959 (1610)
T KOG1848|consen 929 LIDTLLVFSRQKT-DLNISLTAIGLFWTVSDF 959 (1610)
T ss_pred HHHHHHHHHhhhc-cccccHHHHHHHHHHHHH
Confidence 5555655554432 335556677777777644
No 269
>PF04821 TIMELESS: Timeless protein; InterPro: IPR006906 The timeless gene in Drosophila melanogaster (Fruit fly) and its homologues in a number of other insects and mammals (including human) are involved in circadian rhythm control []. This family includes related proteins from a number of fungal species and from Arabidopsis thaliana.
Probab=81.57 E-value=39 Score=30.21 Aligned_cols=128 Identities=15% Similarity=0.125 Sum_probs=65.7
Q ss_pred HhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhccChhhH
Q 017249 24 QALIEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIESSLLALLNLAVRNERNK 103 (375)
Q Consensus 24 ~~~l~~Lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~~~~~~~~~a~~~L~~L~~~~~~~r 103 (375)
-+.++.|.++|+.+|+..+ ...+.++. .+ +++.+.+|.|+..= ++.++...+++.|.+|+. |..
T Consensus 12 l~~LkdL~r~lr~dd~~~~-~v~r~lg~---~~-------iv~~DLiPiL~~~~--~~~~l~~~~l~LLV~LT~--P~~- 75 (266)
T PF04821_consen 12 LECLKDLKRFLRRDDEDQR-DVRRQLGE---WN-------IVQKDLIPILISYK--DDDKLFLACLRLLVNLTW--PIE- 75 (266)
T ss_pred HHHHHHHHHHHHHhCcchH-HHHHHHHH---hc-------hhhhhHHHHHHhcc--CchHHHHHHHHHHHHhCC--CHH-
Confidence 4566777777776666554 33333222 12 33334444443332 267889999999999996 211
Q ss_pred HHHHHcCChHHHHHhhcCC--ChHHHHHHHHHHHHhhccCCChhHHHhcCChHHHHHHhcc-----------CCHHHHHH
Q 017249 104 VKIATAGAIPPLVELLKFQ--NGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHS-----------GSVQGRVD 170 (375)
Q Consensus 104 ~~i~~~g~i~~Lv~lL~~~--~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~l~~L~~lL~~-----------~~~~~~~~ 170 (375)
.+ .+.. +...+.........+. ..|..|...+.+..++..+.. .+..+.+.
T Consensus 76 ----------~~---~~~~~~~~~~~~~~~~l~~~l~---~yK~afl~~~~l~~~~~~l~~~l~~~~~~rt~~d~~ii~l 139 (266)
T PF04821_consen 76 ----------LL---VESQPKDKNQRRNIPELLKYLQ---SYKEAFLDPRVLKALIRLLLPPLEKDWEDRTERDNLIIEL 139 (266)
T ss_pred ----------Hh---ccCCCCChHHHHHHHHHHHHHH---HHHHHHcccHHHHHHHHHHhHHhhcccccCCHHHHHHHHH
Confidence 11 1111 2222222222222221 224555555666655554421 13456788
Q ss_pred HHHHHHHhccCCC
Q 017249 171 AVTALHYLSTCKE 183 (375)
Q Consensus 171 a~~~L~~L~~~~~ 183 (375)
.+..+.|+..-++
T Consensus 140 vL~LiRNlL~Ip~ 152 (266)
T PF04821_consen 140 VLTLIRNLLAIPD 152 (266)
T ss_pred HHHHHHHHhcCCC
Confidence 8888888876543
No 270
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=81.44 E-value=24 Score=31.83 Aligned_cols=71 Identities=20% Similarity=0.264 Sum_probs=51.4
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCChhhH-HHHHhcCChHH----HHHhhC--------CCCHHHHHHHHHHH
Q 017249 26 LIEELSDKLINGDLETKIEAARDIRKVVKKSSLKTR-SEFAAAGVVQP----LVLMLV--------SPNLDAIESSLLAL 92 (375)
Q Consensus 26 ~l~~Lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~-~~~~~~g~v~~----Lv~~L~--------~~~~~~~~~a~~~L 92 (375)
.+|.++.++.+.+++.|..++.++..+.... +... ..+.+.|..+. |..+|. .++..+...+.-+|
T Consensus 120 iiP~iL~llDD~~~~~K~~G~~lL~~ll~~~-~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~~L 198 (282)
T PF10521_consen 120 IIPPILNLLDDYSPEIKIQGCQLLHHLLEKV-PAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAAYPAL 198 (282)
T ss_pred HHhhHHHHhcCCCHHHHHHHHHHHHHHHHhC-ChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHHH
Confidence 4788888888889999999999999999877 3222 34666775554 344554 34566777888888
Q ss_pred HHhhc
Q 017249 93 LNLAV 97 (375)
Q Consensus 93 ~~L~~ 97 (375)
..|+.
T Consensus 199 ~~L~~ 203 (282)
T PF10521_consen 199 LSLLK 203 (282)
T ss_pred HHHHH
Confidence 88743
No 271
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=80.88 E-value=41 Score=30.01 Aligned_cols=218 Identities=12% Similarity=0.059 Sum_probs=124.1
Q ss_pred HHhcCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCC--CCHHHHHHHHHHHHHhhccChhhHHHHHHc
Q 017249 32 DKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVS--PNLDAIESSLLALLNLAVRNERNKVKIATA 109 (375)
Q Consensus 32 ~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~--~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~ 109 (375)
..|.++++..+..|+..|......- +... + ...-+..|+++..+ .|......++..+..|.....-.... ..
T Consensus 6 ~~Ltsed~~~R~ka~~~Ls~vL~~l-p~~~--L-~~~ev~~L~~F~~~rl~D~~~~~~~l~gl~~L~~~~~~~~~~--~~ 79 (262)
T PF14500_consen 6 EYLTSEDPIIRAKALELLSEVLERL-PPDF--L-SRQEVQVLLDFFCSRLDDHACVQPALKGLLALVKMKNFSPES--AV 79 (262)
T ss_pred hhhCCCCHHHHHHHHHHHHHHHHhC-CHhh--c-cHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHhCcCCChhh--HH
Confidence 4567899999999999999988777 2211 1 11124555555432 35555656677777766432211111 11
Q ss_pred CChHHHHHhhc--CCChHHHHHHHHHHHHhhccCCChhHHHhcCChHHHHHHhccC-CHHHHHHHHHHHHHhccCCCCch
Q 017249 110 GAIPPLVELLK--FQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHSG-SVQGRVDAVTALHYLSTCKENSS 186 (375)
Q Consensus 110 g~i~~Lv~lL~--~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~l~~L~~lL~~~-~~~~~~~a~~~L~~L~~~~~~~~ 186 (375)
..+..+.+-.. +-....|..+...+..+..+....-.-.....+..+++.+..+ ||+-...+...+..+...-+.
T Consensus 80 ~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~~-- 157 (262)
T PF14500_consen 80 KILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEFDI-- 157 (262)
T ss_pred HHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhccc--
Confidence 11222332221 1245667788888888765532111112345777888888776 788788888777777644331
Q ss_pred hhhhcCCcHHHHHHhhhc--------ccc--hHHHHHHHHHH-HHhhCChhhhHHHhhccCcHHHHHHHhccCChHHHHH
Q 017249 187 PILDATAVPPLINLLKDC--------KKY--SKFAEKATALL-EILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQH 255 (375)
Q Consensus 187 ~i~~~g~i~~Lv~ll~~~--------~~~--~~~~~~a~~~L-~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~ 255 (375)
....+.+.+.+... ..+ ....+.-...| ..|+.++.-. .-+++.|++-|.++.+.++..
T Consensus 158 ----~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~~fa------~~~~p~LleKL~s~~~~~K~D 227 (262)
T PF14500_consen 158 ----SEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSSTPLFA------PFAFPLLLEKLDSTSPSVKLD 227 (262)
T ss_pred ----chhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcHhhH------HHHHHHHHHHHcCCCcHHHHH
Confidence 33444555554421 111 11222223333 3455444321 357888999999999999999
Q ss_pred HHHHHHHhcccC
Q 017249 256 AVGALLSLCQSC 267 (375)
Q Consensus 256 a~~~L~~l~~~~ 267 (375)
++.+|..++..-
T Consensus 228 ~L~tL~~c~~~y 239 (262)
T PF14500_consen 228 SLQTLKACIENY 239 (262)
T ss_pred HHHHHHHHHHHC
Confidence 999998876543
No 272
>PF11791 Aconitase_B_N: Aconitate B N-terminal domain; InterPro: IPR015933 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. This entry represents the N-terminal HEAT-like domain, which is present in bacterial aconitase (AcnB), but not in AcnA or eukaryotic cAcn/IRP2 or mAcn. This domain is multi-helical, forming two curved layers in a right-handed alpha-alpha superhelix. HEAT-like domains are usually implicated in protein-protein interactions. The HEAT-like domain and the 'swivel' domain that follows it were shown to be sufficient for dimerisation and for AcnB binding to mRNA. An iron-mediated dimerisation mechanism may be responsible for switching AcnB between its catalytic and regulatory roles, as dimerisation requires iron while mRNA binding is inhibited by iron. More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0003994 aconitate hydratase activity, 0006099 tricarboxylic acid cycle; PDB: 1L5J_B.
Probab=80.31 E-value=3 Score=33.31 Aligned_cols=42 Identities=26% Similarity=0.275 Sum_probs=27.8
Q ss_pred HHHHHHHHHHhhccChhhHHHHHHcCChHHHHHhhcCCChHHHHHHHHHHHHh
Q 017249 85 IESSLLALLNLAVRNERNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTL 137 (375)
Q Consensus 85 ~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L 137 (375)
...|+..|+.+-++- -|++|+.+|.+.++++...|+.+|.+-
T Consensus 80 ~~~Av~LLGtM~GGY-----------NV~~LI~~L~~~d~~lA~~Aa~aLk~T 121 (154)
T PF11791_consen 80 PAEAVELLGTMLGGY-----------NVQPLIDLLKSDDEELAEEAAEALKNT 121 (154)
T ss_dssp HHHHHHHHTTS-SST-----------THHHHHHGG--G-TTTHHHHHHHHHT-
T ss_pred HHHHHHHHhhccCCC-----------cHHHHHHHHcCCcHHHHHHHHHHHHhh
Confidence 555666666655532 278999999988899999999998874
No 273
>KOG1566 consensus Conserved protein Mo25 [Function unknown]
Probab=80.17 E-value=47 Score=30.25 Aligned_cols=156 Identities=12% Similarity=0.175 Sum_probs=111.5
Q ss_pred HhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhccChhhH
Q 017249 24 QALIEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIESSLLALLNLAVRNERNK 103 (375)
Q Consensus 24 ~~~l~~Lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~~~~~~~~~a~~~L~~L~~~~~~~r 103 (375)
.+.+..||.--.. .++.-..+-..+.....+. ...+.+....-......+...+.-++...|..+...+.......-
T Consensus 125 ~e~~~~lv~~~~~-~~~iaL~cg~mlrEcirhe--~LakiiL~s~~~~~FF~~vq~p~FdiasdA~~tfK~llt~Hk~~v 201 (342)
T KOG1566|consen 125 PEILDNLVKGYEN-TPEIALTCGNMLRECIRHE--FLAKIILESTNFEKFFLYVQLPNFDIASDAFSTFKELLTRHKSVV 201 (342)
T ss_pred HHHHHHHHhhhcc-chHHHHHHHHHHHHHHhhH--HHHHHHHcchhHHHHHHHHhccchHHHHHHHHHHHHHHHHhHHHH
Confidence 3444444444112 4666666666777776665 666667777777888888888888888888888888776443333
Q ss_pred HHHHHcC---ChH-HHHHhhcCCChHHHHHHHHHHHHhhccCCChhHH----HhcCChHHHHHHhccCCHHHHHHHHHHH
Q 017249 104 VKIATAG---AIP-PLVELLKFQNGTLRELAAAAILTLSAAAPNKPAI----AASGAAPLLVQILHSGSVQGRVDAVTAL 175 (375)
Q Consensus 104 ~~i~~~g---~i~-~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i----~~~~~l~~L~~lL~~~~~~~~~~a~~~L 175 (375)
..+.... .++ .--.++++.+--.+..+..+|..+-.+.+|...+ .....+..+..+|+.++..++..|....
T Consensus 202 aEfl~~n~d~ff~e~~~~Ll~s~Nyvtkrqs~kllg~llldr~N~~~M~kYiss~enLKlmM~llrdkskniQ~eAFhvF 281 (342)
T KOG1566|consen 202 AEFLIRNYDNFFAEVYEKLLRSENYVTKRQSLKLLGELLLDRSNSAVMTKYISSPENLKLMMNLLRDKSKNIQLEAFHVF 281 (342)
T ss_pred HHHHHhChhhhHHHHHHHHhcccceehHHHHHHhHHHHHhCCCcHHHHHHHhcCHHHHHHHHHHhhCccccchHHHHHHH
Confidence 3343322 223 3556778889889999999999999888875544 4567899999999999999999999988
Q ss_pred HHhccCC
Q 017249 176 HYLSTCK 182 (375)
Q Consensus 176 ~~L~~~~ 182 (375)
+-...++
T Consensus 282 KvfvAnp 288 (342)
T KOG1566|consen 282 KVFVANP 288 (342)
T ss_pred HHHhcCC
Confidence 8766553
No 274
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=79.64 E-value=14 Score=33.47 Aligned_cols=142 Identities=16% Similarity=0.180 Sum_probs=83.4
Q ss_pred hHHHHHHhccCCHHHHHHHHHHHHHhccCC-CCchhhhhcCCcHHHHHHhhhcccchHHHHHHHHHHHHhhCC-hhhhHH
Q 017249 153 APLLVQILHSGSVQGRVDAVTALHYLSTCK-ENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSS-EEGRIA 230 (375)
Q Consensus 153 l~~L~~lL~~~~~~~~~~a~~~L~~L~~~~-~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~~-~~~~~~ 230 (375)
+...+..|.+.+-......+..|..|+... +...... ..++-.+++-+++. ...+...|+-++..+... .....+
T Consensus 90 l~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L-~~vii~vvkslKNl--RS~VsraA~~t~~difs~ln~~i~~ 166 (334)
T KOG2933|consen 90 LKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPML-HEVIIAVVKSLKNL--RSAVSRAACMTLADIFSSLNNSIDQ 166 (334)
T ss_pred HHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHH-HHHHHHHHHHhcCh--HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555666666667777777777776442 2211111 12444444445443 345677777777766543 222322
Q ss_pred HhhccCcHHHHHHHhccCChHHHHHHHHHHHHhcccCcHHHHHHHHHcCChHHHHHHhhhCCHHHHHHHHHHHHHhh
Q 017249 231 ITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLR 307 (375)
Q Consensus 231 ~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~~~~~A~~~L~~l~ 307 (375)
.. .+.+..|+.--...+.-+++.|-.+|..+..+..+ .-+++.|...+...+++++..++.+..++-
T Consensus 167 ~l--d~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp--------~~~L~~L~~~~~~~n~r~r~~a~~~~~~~v 233 (334)
T KOG2933|consen 167 EL--DDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTP--------QKLLRKLIPILQHSNPRVRAKAALCFSRCV 233 (334)
T ss_pred HH--HHHHHHHHhhhcccchHHHHHHHHHHHHHHhccCh--------HHHHHHHHHHHhhhchhhhhhhhccccccc
Confidence 22 23333333333334567899999999888776533 235677777788889999988887665553
No 275
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=79.26 E-value=46 Score=29.67 Aligned_cols=142 Identities=13% Similarity=0.084 Sum_probs=91.4
Q ss_pred hHHHHHhhHhHHHHHHHHhcCCC----HHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCC----CCHHHHHH
Q 017249 16 EEAWNQRKQALIEELSDKLINGD----LETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVS----PNLDAIES 87 (375)
Q Consensus 16 ~~~~~~~~~~~l~~Lv~~L~s~~----~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~----~~~~~~~~ 87 (375)
+.+.-+.-...+|.++..+..++ .......+..|..++... . .+.+..+...... +..+...+
T Consensus 102 ~~rll~~~la~LP~ll~~~d~~~~i~~~~~~~~~A~~La~~a~~~--~-------~~~La~il~~ya~~~fr~~~dfl~~ 172 (262)
T PF14225_consen 102 QSRLLFLLLALLPRLLHAFDDPNPIQPDQECIEIAEALAQVAEAQ--G-------LPNLARILSSYAKGRFRDKDDFLSQ 172 (262)
T ss_pred CccHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHHHHhC--C-------CccHHHHHHHHHhcCCCCHHHHHHH
Confidence 34666677778899998888766 244557778888888654 1 1223333333322 23455666
Q ss_pred HHHHHHHhhccChhhHHHHHHcCChHHHHHhhcCCChHHHHHHHHHHHHhhccCCChhHHHhcCChHHHHHHhccCCHHH
Q 017249 88 SLLALLNLAVRNERNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHSGSVQG 167 (375)
Q Consensus 88 a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~l~~L~~lL~~~~~~~ 167 (375)
++..|+.-.. |+.-. ..+..|+.+|.++.+.++..++.+|..+...-+.+.. ...+.+.+++++++.+...
T Consensus 173 v~~~l~~~f~--P~~~~-----~~l~~Ll~lL~n~~~w~~~~~L~iL~~ll~~~d~~~~-~~~dlispllrlL~t~~~~- 243 (262)
T PF14225_consen 173 VVSYLREAFF--PDHEF-----QILTFLLGLLENGPPWLRRKTLQILKVLLPHVDMRSP-HGADLISPLLRLLQTDLWM- 243 (262)
T ss_pred HHHHHHHHhC--chhHH-----HHHHHHHHHHhCCcHHHHHHHHHHHHHHhccccCCCC-cchHHHHHHHHHhCCccHH-
Confidence 6666665432 22222 2355789999999999999999999999887664433 4456899999999876533
Q ss_pred HHHHHHHHHH
Q 017249 168 RVDAVTALHY 177 (375)
Q Consensus 168 ~~~a~~~L~~ 177 (375)
.|+.+|-+
T Consensus 244 --eAL~VLd~ 251 (262)
T PF14225_consen 244 --EALEVLDE 251 (262)
T ss_pred --HHHHHHHH
Confidence 44444443
No 276
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=79.05 E-value=36 Score=32.10 Aligned_cols=131 Identities=22% Similarity=0.183 Sum_probs=76.6
Q ss_pred HHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHH-hh--CCCCHHHHHHHHHHHHHhhccChh------------hH
Q 017249 39 LETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVL-ML--VSPNLDAIESSLLALLNLAVRNER------------NK 103 (375)
Q Consensus 39 ~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~-~L--~~~~~~~~~~a~~~L~~L~~~~~~------------~r 103 (375)
..-+..|+..+..++... ++....+.. +.+..++. .- .+.+..-++.|+..++.|+..... +-
T Consensus 225 ~TrR~AA~dfl~~L~~~~-~~~v~~i~~-~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~v 302 (370)
T PF08506_consen 225 DTRRRAACDFLRSLCKKF-EKQVTSILM-QYIQQLLQQYASNPSNNWRSKDGALYLIGALASKGSTTKSGVTQTNELVDV 302 (370)
T ss_dssp -SHHHHHHHHHHHHHHHH-HHHHHHHHH-HHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS-H
T ss_pred CCcHHHHHHHHHHHHHHH-hHHHHHHHH-HHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhccccCCcccccccccH
Confidence 344667778888888665 222222211 22232222 11 134678889999999999865422 22
Q ss_pred HHHHHcCChHHHHHhhcCCChHHHHHHHHHHHHhhccCCChhHHHhcCChHHHHHHhccCCHHHHHHHHHHH
Q 017249 104 VKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHSGSVQGRVDAVTAL 175 (375)
Q Consensus 104 ~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L 175 (375)
..+....++|-|. -=.+..|-++..|++.+...-..-+ +..+ .+.++.++..|.+++..+...|+.++
T Consensus 303 ~~Ff~~~v~peL~-~~~~~~piLka~aik~~~~Fr~~l~-~~~l--~~~~~~l~~~L~~~~~vv~tyAA~~i 370 (370)
T PF08506_consen 303 VDFFSQHVLPELQ-PDVNSHPILKADAIKFLYTFRNQLP-KEQL--LQIFPLLVNHLQSSSYVVHTYAAIAI 370 (370)
T ss_dssp HHHHHHHTCHHHH--SS-S-HHHHHHHHHHHHHHGGGS--HHHH--HHHHHHHHHHTTSS-HHHHHHHHHHH
T ss_pred HHHHHHHhHHHhc-ccCCCCcchHHHHHHHHHHHHhhCC-HHHH--HHHHHHHHHHhCCCCcchhhhhhhhC
Confidence 4455555666665 1123367778888887777654322 2222 45799999999999999999988764
No 277
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=78.95 E-value=16 Score=34.01 Aligned_cols=110 Identities=15% Similarity=0.135 Sum_probs=67.3
Q ss_pred ChHHHHHhhCCC-------CHHHHHHHHHHHHHhhccChhhHHHHHHcCChHHHHHhhcC----------CChHHHHHHH
Q 017249 69 VVQPLVLMLVSP-------NLDAIESSLLALLNLAVRNERNKVKIATAGAIPPLVELLKF----------QNGTLRELAA 131 (375)
Q Consensus 69 ~v~~Lv~~L~~~-------~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~----------~~~~~~~~a~ 131 (375)
.+|.++.++... +.......++.+..|.. ++...-..+-...+|.++.++-. .+-.+|+.|+
T Consensus 211 LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl~-N~~l~le~Ylh~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA 289 (343)
T cd08050 211 LLPYFVRFIAEGVTVNLDQNLALLIYLMRMVRALLD-NPNLHLEPYLHQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAA 289 (343)
T ss_pred hhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhc-CCCCchHHhHHHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHH
Confidence 466667666543 45566677777777777 55555554445578888876622 1247899999
Q ss_pred HHHHHhhccCCChhHHHhcCChHHHHHHhccCC--HHHHHHHHHHHHHhc
Q 017249 132 AAILTLSAAAPNKPAIAASGAAPLLVQILHSGS--VQGRVDAVTALHYLS 179 (375)
Q Consensus 132 ~~L~~Ls~~~~~~~~i~~~~~l~~L~~lL~~~~--~~~~~~a~~~L~~L~ 179 (375)
.+|..++..-.....-.....+..+.+.+.++. ......|+..|..|.
T Consensus 290 ~ll~~i~~~f~~~y~~l~~ri~~tl~k~l~d~~~~~~~~YGAi~GL~~lG 339 (343)
T cd08050 290 RLLAQICRKFSTSYNTLQPRITRTLLKALLDPKKPLTTHYGAIVGLSALG 339 (343)
T ss_pred HHHHHHHHHcCCCCCcHHHHHHHHHHHHHcCCCCCcchhhHHHHHHHHhC
Confidence 999999865332222123344456666665553 334777777776663
No 278
>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning
Probab=78.38 E-value=22 Score=26.31 Aligned_cols=68 Identities=18% Similarity=0.125 Sum_probs=51.5
Q ss_pred hcCChHHHHHhhCCCCHHHHHHHHHHHHHhhccChhhHHHHHHcCChHHHHHhhcCCChHHHHHHHHHH
Q 017249 66 AAGVVQPLVLMLVSPNLDAIESSLLALLNLAVRNERNKVKIATAGAIPPLVELLKFQNGTLRELAAAAI 134 (375)
Q Consensus 66 ~~g~v~~Lv~~L~~~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L 134 (375)
..+.+..|++....++....+.++..|..+.. ++.....+.+.|+++.|-++-..-++..+...-.++
T Consensus 28 ~~~Ll~~LleWFnf~~~~~~~~VL~Ll~~L~~-~~~a~~~l~~iG~~~fL~klr~~~~~~~~~~id~il 95 (98)
T PF14726_consen 28 ERLLLKQLLEWFNFPPVPMKEEVLALLLRLLK-SPYAAQILRDIGAVRFLSKLRPNVEPNLQAEIDEIL 95 (98)
T ss_pred HHHHHHHHHHHhCCCCCccHHHHHHHHHHHHh-CcHHHHHHHHccHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 34678888888888877788999999999998 677888888899998876666555666655444333
No 279
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=78.36 E-value=15 Score=27.93 Aligned_cols=71 Identities=14% Similarity=0.255 Sum_probs=54.7
Q ss_pred CcHHHHHHHhccCChHHHHHHHHHHHHhcccCcHHHHHHHHHcCChHHHHHHh----h--hCCHHHHHHHHHHHHHh
Q 017249 236 GGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLT----V--EGTFEAQERARTLLDLL 306 (375)
Q Consensus 236 g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~g~v~~L~~ll----~--~~~~~~~~~A~~~L~~l 306 (375)
.++..|...|.+.++..+..|+.+|-.++.++++.....+.+...+..++... . ..+..+|+.+..++...
T Consensus 37 ~~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f~~~i~~~~~~~~l~~~~~~~~~~~~~~~~Vr~k~~~l~~~w 113 (115)
T cd00197 37 EAVDAIKKRINNKNPHVVLKALTLLEYCVKNCGERFHQEVASNDFAVELLKFDKSKLLGDDVSTNVREKAIELVQLW 113 (115)
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHHHHHHHHhHHHHHHHHhhccccccCCCChHHHHHHHHHHHHH
Confidence 35667777888889999999999999999998777777777777666665531 1 23688999998887654
No 280
>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning
Probab=78.23 E-value=18 Score=26.78 Aligned_cols=69 Identities=13% Similarity=0.067 Sum_probs=52.7
Q ss_pred hhHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHH
Q 017249 22 RKQALIEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIESSLLAL 92 (375)
Q Consensus 22 ~~~~~l~~Lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~~~~~~~~~a~~~L 92 (375)
.....+..|+++++.+++..+..++..+..+...+ .....+.+.|+++.|-++=..-++..+...-..+
T Consensus 27 ~~~~Ll~~LleWFnf~~~~~~~~VL~Ll~~L~~~~--~a~~~l~~iG~~~fL~klr~~~~~~~~~~id~il 95 (98)
T PF14726_consen 27 KERLLLKQLLEWFNFPPVPMKEEVLALLLRLLKSP--YAAQILRDIGAVRFLSKLRPNVEPNLQAEIDEIL 95 (98)
T ss_pred cHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHhCc--HHHHHHHHccHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 36678889999999877778999999999998887 7777788889998876666555565555444333
No 281
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=77.47 E-value=25 Score=26.69 Aligned_cols=73 Identities=12% Similarity=0.128 Sum_probs=54.5
Q ss_pred HhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhC------CCCHHHHHHHHHHHHHhh
Q 017249 24 QALIEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLV------SPNLDAIESSLLALLNLA 96 (375)
Q Consensus 24 ~~~l~~Lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~------~~~~~~~~~a~~~L~~L~ 96 (375)
.+.+..|-..|.+.++.++..|+..|-.+..+.++.....+....++..++.+.. ..+..++..+...+...+
T Consensus 36 ~~~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f~~~i~~~~~~~~l~~~~~~~~~~~~~~~~Vr~k~~~l~~~w~ 114 (115)
T cd00197 36 KEAVDAIKKRINNKNPHVVLKALTLLEYCVKNCGERFHQEVASNDFAVELLKFDKSKLLGDDVSTNVREKAIELVQLWA 114 (115)
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHHHHHHHHhHHHHHHHHhhccccccCCCChHHHHHHHHHHHHHh
Confidence 4567777788888999999999999999999885667777777776666655311 235788888887776543
No 282
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=75.98 E-value=8.5 Score=30.61 Aligned_cols=75 Identities=20% Similarity=0.196 Sum_probs=58.8
Q ss_pred HhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCCC-CHH---HHHHHHHHHHHhhcc
Q 017249 24 QALIEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSP-NLD---AIESSLLALLNLAVR 98 (375)
Q Consensus 24 ~~~l~~Lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~~-~~~---~~~~a~~~L~~L~~~ 98 (375)
.+.+..|-..|.++++.++..|+..+-.+..+..+.....+.+..++..|..++.+. ... +++.++..|...+..
T Consensus 41 kea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~~ 119 (140)
T PF00790_consen 41 KEAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWAEA 119 (140)
T ss_dssp HHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHHH
Confidence 556778888888999999999999999999887345566666678899999988654 333 888998888877753
No 283
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=75.87 E-value=1e+02 Score=31.75 Aligned_cols=287 Identities=12% Similarity=0.020 Sum_probs=152.0
Q ss_pred HhHHHHHHHHhc-C-------CCHHHHHHHHHHHHHHHh--hCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHH
Q 017249 24 QALIEELSDKLI-N-------GDLETKIEAARDIRKVVK--KSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIESSLLALL 93 (375)
Q Consensus 24 ~~~l~~Lv~~L~-s-------~~~~~~~~a~~~l~~l~~--~~~~~~~~~~~~~g~v~~Lv~~L~~~~~~~~~~a~~~L~ 93 (375)
.+.++.++..|. + +++....-|++.++++.. .. +....-+.+.=.++.++..++++.--++-.||..+.
T Consensus 407 qgiLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk-~sp~an~me~fiv~hv~P~f~s~ygfL~Srace~is 485 (970)
T COG5656 407 QGILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITK-MSPAANVMEYFIVNHVIPAFRSNYGFLKSRACEFIS 485 (970)
T ss_pred hhHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhcc-CchHHHHHHHHHHHHhhHhhcCcccchHHHHHHHHH
Confidence 456777777773 1 234445557777777655 22 112222222334666677778887788889999999
Q ss_pred HhhccChhhHHHHHHcCChHHHHHhhcCCChHHHHHHHHHHHHhhccCCChhHHH--hcCChHHHHHHhccCCHHHHHHH
Q 017249 94 NLAVRNERNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIA--ASGAAPLLVQILHSGSVQGRVDA 171 (375)
Q Consensus 94 ~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~--~~~~l~~L~~lL~~~~~~~~~~a 171 (375)
.+.. +.++.-.-..+.+.....+.+++-.++..|+-++.-+..+......+. ..+.++.|+.+-+.-+.+....+
T Consensus 486 ~~ee---Dfkd~~ill~aye~t~ncl~nn~lpv~ieAalAlq~fi~~~q~h~k~sahVp~tmekLLsLSn~feiD~LS~v 562 (970)
T COG5656 486 TIEE---DFKDNGILLEAYENTHNCLKNNHLPVMIEAALALQFFIFNEQSHEKFSAHVPETMEKLLSLSNTFEIDPLSMV 562 (970)
T ss_pred HHHH---hcccchHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHhchhhhHHHHhhhhHHHHHHHHhcccccchHHHHH
Confidence 8843 455555555567778888888888899999999988887765544443 23445555555444444444444
Q ss_pred HHHHHH-hccC-CCCchhhhhcCCcHHHHHH----hhhcc----cchHHHHHHHHHHHHhhC---ChhhhHHHhhc--cC
Q 017249 172 VTALHY-LSTC-KENSSPILDATAVPPLINL----LKDCK----KYSKFAEKATALLEILSS---SEEGRIAITNS--DG 236 (375)
Q Consensus 172 ~~~L~~-L~~~-~~~~~~i~~~g~i~~Lv~l----l~~~~----~~~~~~~~a~~~L~~l~~---~~~~~~~~~~~--~g 236 (375)
...+.. -+.. .+-...++. ..++..+++ +.+++ ..++-+..|.++|..+.. +-+++..++.. ..
T Consensus 563 Me~fVe~fseELspfa~eLa~-~Lv~qFlkiaq~l~ens~d~~s~vDDKqmaasGiL~T~~smiLSlen~p~vLk~le~s 641 (970)
T COG5656 563 MESFVEYFSEELSPFAPELAG-SLVRQFLKIAQSLLENSSDTSSVVDDKQMAASGILRTIESMILSLENRPLVLKYLEVS 641 (970)
T ss_pred HHHHHHHhHHhhchhHHHHHH-HHHHHHHHHHHHHHcCCccccccccHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHH
Confidence 444332 1110 111111111 122222222 22221 011234556777765542 33333333321 12
Q ss_pred cHHHHHHHhccCChHHHHHHHHHHHHhcccCcHHHHHHHHHcCChHHHHHHhhhCC-HHHHHHHHHHHHHhhcCChhhhh
Q 017249 237 GILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGT-FEAQERARTLLDLLRDTPQEKRL 315 (375)
Q Consensus 237 ~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~g~v~~L~~ll~~~~-~~~~~~A~~~L~~l~~~~~~~~~ 315 (375)
..|.+-=.|++.-...-.+|+..+-+...... +.- =+.-|+.+.|.+++.+.. ..--+.+.-+|.++--....+..
T Consensus 642 lypvi~Filkn~i~dfy~Ea~dildg~tf~sk-eI~--pimwgi~Ell~~~l~~~~t~~y~ee~~~al~nfityG~~ef~ 718 (970)
T COG5656 642 LYPVISFILKNEISDFYQEALDILDGYTFMSK-EIE--PIMWGIFELLLNLLIDEITAVYSEEVADALDNFITYGKTEFM 718 (970)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhhhhHHHH-Hhh--hhhhHHHHHHHhcccccchhhhHHHHHHHHHHHHHhCccccc
Confidence 22222223345556667788888877655431 110 012345555555555443 24456667788888766644444
Q ss_pred hhh
Q 017249 316 SSS 318 (375)
Q Consensus 316 ~~g 318 (375)
+.|
T Consensus 719 ~~~ 721 (970)
T COG5656 719 DAG 721 (970)
T ss_pred ccc
Confidence 444
No 284
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=75.50 E-value=20 Score=33.48 Aligned_cols=73 Identities=12% Similarity=0.165 Sum_probs=63.5
Q ss_pred CcHHHHHHHhccCChHHHHHHHHHHHHhcccCcHHHHHHHHHcCChHHHHHHhh-hCCHHHHHHHHHHHHHhhc
Q 017249 236 GGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTV-EGTFEAQERARTLLDLLRD 308 (375)
Q Consensus 236 g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~g~v~~L~~ll~-~~~~~~~~~A~~~L~~l~~ 308 (375)
.++..|...|.+.++.+...|+..+..++.++....+..+-...+...|..++. ...+.++++-..++...++
T Consensus 45 d~lk~i~KRln~~dphV~L~AlTLlda~~~NCg~~~r~EVsSr~F~~el~al~~~~~h~kV~~k~~~lv~eWse 118 (462)
T KOG2199|consen 45 DCLKAIMKRLNHKDPHVVLQALTLLDACVANCGKRFRLEVSSRDFTTELRALIESKAHPKVCEKMRDLVKEWSE 118 (462)
T ss_pred HHHHHHHHHhcCCCcchHHHHHHHHHHHHHhcchHHHHHHhhhhHHHHHHHHHhhcccHHHHHHHHHHHHHHHH
Confidence 467788888999999999999999999999887777888888889999999998 6789999998888888776
No 285
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=75.19 E-value=39 Score=28.30 Aligned_cols=140 Identities=16% Similarity=0.175 Sum_probs=85.5
Q ss_pred HHHHHHHHHHHHHhhCChhhHHHH-------H-----hcCChHHHH-HhhCCCCHHHHHHHHHHHHHhhccChhhHHHHH
Q 017249 41 TKIEAARDIRKVVKKSSLKTRSEF-------A-----AAGVVQPLV-LMLVSPNLDAIESSLLALLNLAVRNERNKVKIA 107 (375)
Q Consensus 41 ~~~~a~~~l~~l~~~~~~~~~~~~-------~-----~~g~v~~Lv-~~L~~~~~~~~~~a~~~L~~L~~~~~~~r~~i~ 107 (375)
++..|+.+|..+++.. +.|..+ - ....-+.|+ -++.++++.+|..|+.+|..|-.+...+-..--
T Consensus 2 vR~~Al~~L~al~k~~--~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae 79 (182)
T PF13251_consen 2 VRQAALQCLQALAKST--DKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAE 79 (182)
T ss_pred hhHHHHHHHHHHHHhc--CCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHH
Confidence 4667888888888773 111111 1 112333444 456788999999999999999876544333222
Q ss_pred Hc----CCh---------------HHHHHhhcCC-ChHHHHHHHHHHHHhhccCCChhH-H-HhcCChHHHHHHhccCCH
Q 017249 108 TA----GAI---------------PPLVELLKFQ-NGTLRELAAAAILTLSAAAPNKPA-I-AASGAAPLLVQILHSGSV 165 (375)
Q Consensus 108 ~~----g~i---------------~~Lv~lL~~~-~~~~~~~a~~~L~~Ls~~~~~~~~-i-~~~~~l~~L~~lL~~~~~ 165 (375)
+. +.+ ..|+..|... +..+....++++..|..+.+.... . .-...+..+..++.+.|.
T Consensus 80 ~~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~ 159 (182)
T PF13251_consen 80 ESKGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRDP 159 (182)
T ss_pred hcCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCCC
Confidence 11 122 2333444443 666777888999998887663221 1 112344555556778888
Q ss_pred HHHHHHHHHHHHhccCC
Q 017249 166 QGRVDAVTALHYLSTCK 182 (375)
Q Consensus 166 ~~~~~a~~~L~~L~~~~ 182 (375)
.++..++.++..|....
T Consensus 160 ~v~v~~l~~~~~l~s~~ 176 (182)
T PF13251_consen 160 NVRVAALSCLGALLSVQ 176 (182)
T ss_pred cHHHHHHHHHHHHHcCC
Confidence 99999999988877543
No 286
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=74.93 E-value=35 Score=28.55 Aligned_cols=113 Identities=14% Similarity=0.153 Sum_probs=73.5
Q ss_pred HHHHH-HhcCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcC-----C----------h----HHHHHhhCCC-CHHHHH
Q 017249 28 EELSD-KLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAG-----V----------V----QPLVLMLVSP-NLDAIE 86 (375)
Q Consensus 28 ~~Lv~-~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g-----~----------v----~~Lv~~L~~~-~~~~~~ 86 (375)
+.|+. .+.++++.++..|+..+..+..+. ...-...-+.. + + ..|+..|..+ +..+..
T Consensus 42 ~sLlt~il~Dp~~kvR~aA~~~l~~lL~gs-k~~L~~Ae~~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~ 120 (182)
T PF13251_consen 42 PSLLTCILKDPSPKVRAAAASALAALLEGS-KPFLAQAEESKGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLT 120 (182)
T ss_pred cchhHHHHcCCchhHHHHHHHHHHHHHHcc-HHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHH
Confidence 34444 445889999999999999998776 33322222111 1 1 1234444443 677888
Q ss_pred HHHHHHHHhhccChhhHHHHHH-cCChHHHHHhhcCCChHHHHHHHHHHHHhhccC
Q 017249 87 SSLLALLNLAVRNERNKVKIAT-AGAIPPLVELLKFQNGTLRELAAAAILTLSAAA 141 (375)
Q Consensus 87 ~a~~~L~~L~~~~~~~r~~i~~-~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~ 141 (375)
+.+++|..|....|..|-..-- ...+..+..++.+.+++++..++.++..+....
T Consensus 121 q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~~v~v~~l~~~~~l~s~~ 176 (182)
T PF13251_consen 121 QLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRDPNVRVAALSCLGALLSVQ 176 (182)
T ss_pred HHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC
Confidence 9999999999877766643211 223444555667789999999999988876544
No 287
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=74.62 E-value=11 Score=38.87 Aligned_cols=165 Identities=12% Similarity=0.016 Sum_probs=100.0
Q ss_pred hhhHHHHHhhHhHHHHHHHHhc-CC-------CHHHHHHHHHHHHHHHhhCChhhHHHHHhc--------CChHHHHHhh
Q 017249 14 QEEEAWNQRKQALIEELSDKLI-NG-------DLETKIEAARDIRKVVKKSSLKTRSEFAAA--------GVVQPLVLML 77 (375)
Q Consensus 14 ~~~~~~~~~~~~~l~~Lv~~L~-s~-------~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~--------g~v~~Lv~~L 77 (375)
.-+.+..+.+.+.+..++++.+ +. -.+....|+..|.-+..-+ ..+..++.. .|+..++..-
T Consensus 590 ~w~~aenflkls~v~~~L~l~~~~~~w~~~spR~d~~~~Al~vL~i~t~iP--~iq~~La~~~~~n~~aydGiaIiL~~a 667 (1516)
T KOG1832|consen 590 QWPAAENFLKLSGVVTMLELCQTPPVWRYLSPRHDLLQYALGVLHIVTSIP--DIQKALAHATLSNNRAYDGIAIILDAA 667 (1516)
T ss_pred cchHHHHHHHhHHHHHHHHHHhcCccccccCcchHHHHHHHhheeeeEecc--hHHHHHHHHHhhcccccCceEEEeecc
Confidence 3344556677777777777775 22 2455566776666555444 444444321 1344444332
Q ss_pred CC----CCHHHHHHHHHHHHHhhccChhhHHHHHHc----CChHHHHHhhcCC-ChHHHHHHHHHHHHhhccCCChhHHH
Q 017249 78 VS----PNLDAIESSLLALLNLAVRNERNKVKIATA----GAIPPLVELLKFQ-NGTLRELAAAAILTLSAAAPNKPAIA 148 (375)
Q Consensus 78 ~~----~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~----g~i~~Lv~lL~~~-~~~~~~~a~~~L~~Ls~~~~~~~~i~ 148 (375)
.. .+++++..|+.+|.|+....|++|...+.. .+-+.. .+..+ .....++.+.-.|+. +.
T Consensus 668 ~g~~~i~Dpei~~~AL~vIincVc~pp~~r~s~i~~v~S~~g~~r~--~l~~~~ks~~le~~l~~mw~~---------Vr 736 (1516)
T KOG1832|consen 668 NGSNSIVDPEIIQPALNVIINCVCPPPTTRPSTIVAVGSQSGDRRI--FLGAGTKSAKLEQVLRQMWEA---------VR 736 (1516)
T ss_pred cccccccCHHHHHHHHhhhheeecCCCCcchhhhhhccccCCCccc--cccCCCchHHHHHHHHHHHHH---------Hh
Confidence 21 278999999999999998777887665431 111111 11111 122334444444443 33
Q ss_pred hcCChHHHHHHhccCC-----HHHHHHHHHHHHHhccCCCCchhhhhc
Q 017249 149 ASGAAPLLVQILHSGS-----VQGRVDAVTALHYLSTCKENSSPILDA 191 (375)
Q Consensus 149 ~~~~l~~L~~lL~~~~-----~~~~~~a~~~L~~L~~~~~~~~~i~~~ 191 (375)
...+|..|+++|+..+ ..++..||.+|.-|+.++..++.+...
T Consensus 737 ~ndGIkiLl~Ll~~k~P~t~aD~IRalAc~~L~GLaR~~tVrQIltKL 784 (1516)
T KOG1832|consen 737 GNDGIKILLKLLQYKNPPTTADCIRALACRVLLGLARDDTVRQILTKL 784 (1516)
T ss_pred cCccHHHHHHHHhccCCCCcHHHHHHHHHHHHhccccCcHHHHHHHhC
Confidence 5678999999998654 357899999999999998877766554
No 288
>PF04869 Uso1_p115_head: Uso1 / p115 like vesicle tethering protein, head region; InterPro: IPR006953 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associated protein (TAP) or Vesicle docking protein, this myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the head region. The head region is highly conserved, but its function is unknown. It does not seem to be essential for vesicle tethering []. The N-terminal part of the head region contains context-detected Armadillo/beta-catenin-like repeats.; GO: 0006886 intracellular protein transport, 0048280 vesicle fusion with Golgi apparatus, 0000139 Golgi membrane, 0005737 cytoplasm; PDB: 2W3C_A 3GRL_A 3GQ2_A.
Probab=73.41 E-value=29 Score=31.78 Aligned_cols=137 Identities=13% Similarity=0.156 Sum_probs=82.0
Q ss_pred HhHHHHHHHHhc-CC---CHHHHHHHHHHHHHHHhhCChhhHHHHHhc-------C----ChHHHHHhhC------CCCH
Q 017249 24 QALIEELSDKLI-NG---DLETKIEAARDIRKVVKKSSLKTRSEFAAA-------G----VVQPLVLMLV------SPNL 82 (375)
Q Consensus 24 ~~~l~~Lv~~L~-s~---~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~-------g----~v~~Lv~~L~------~~~~ 82 (375)
...+..|+..+- .. ..+.+..|+.++..+..++ ++.+..+++. + ....|++.|- +.++
T Consensus 33 ~pvi~~LL~~~L~~~~~~~f~lR~AA~~c~kay~~~N-~~~q~~~l~~~i~~~~~~~~~~~~~nl~~~Ll~~~~~~~~dp 111 (312)
T PF04869_consen 33 VPVIDALLNLMLNENSVQPFDLRCAALYCFKAYFYNN-EEGQTAFLSTLIPSYASGNSDDPIANLLTALLDYDSDLSLDP 111 (312)
T ss_dssp EEHHHHHHHHHT-TT--S-HHHHHHHHHHHHHHHTT--HHHHHHHHHTTSSTT--SS--SSSS-HHHHHT------SS-H
T ss_pred ccHHHHHHHHHhccccccchHHHHHHHHHHHHHHhcC-HHHHHHHHHHHhccCCCCcccchhhHHHHHHHHhhccccCCH
Confidence 345555665443 33 5678999999999999999 8888877752 1 1224666554 3456
Q ss_pred HHHHHHHHHHHHhhccChhhHHHHHHc------CC------hHHHHHhhcC-----CChHHHHHHHHHHHHhhccCC-Ch
Q 017249 83 DAIESSLLALLNLAVRNERNKVKIATA------GA------IPPLVELLKF-----QNGTLRELAAAAILTLSAAAP-NK 144 (375)
Q Consensus 83 ~~~~~a~~~L~~L~~~~~~~r~~i~~~------g~------i~~Lv~lL~~-----~~~~~~~~a~~~L~~Ls~~~~-~~ 144 (375)
--.+-|+.+|.++..++++.|.....- .+ ++.+..+|-. .++.++..-+..|.....++. ..
T Consensus 112 y~~wfAa~il~hll~dn~~~Ke~al~V~~~~~~~ge~~vtliq~v~~lL~~~l~~~~d~ri~igyL~LL~~WL~e~p~AV 191 (312)
T PF04869_consen 112 YRCWFAAVILMHLLRDNPEAKEQALRVTEGDESSGEEPVTLIQTVSELLIASLRRNSDPRIQIGYLMLLIVWLFECPDAV 191 (312)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHTT--EE--STTS--EEHHHHHHHHTTT----T--HHHHHHHHHHHHHHHTT-HHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHcccCCCCCCCCCcccHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHHHhCCHHHH
Confidence 668899999999999999998876642 11 3344554433 245555555555555444433 33
Q ss_pred hHH-HhcCChHHHHHHhc
Q 017249 145 PAI-AASGAAPLLVQILH 161 (375)
Q Consensus 145 ~~i-~~~~~l~~L~~lL~ 161 (375)
..+ .+...++.|+....
T Consensus 192 ~~FL~~~s~l~~Li~~~~ 209 (312)
T PF04869_consen 192 NDFLSEGSNLQSLIEFSN 209 (312)
T ss_dssp HHHHCSTTHHHHHHHHHS
T ss_pred HHHHcCcchHHHHHHHhh
Confidence 333 45568888888753
No 289
>PRK14707 hypothetical protein; Provisional
Probab=73.25 E-value=1.9e+02 Score=33.78 Aligned_cols=313 Identities=16% Similarity=0.129 Sum_probs=155.4
Q ss_pred HHHHHHhc--CCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCC-CCHHHHHHHHHHHHHhhccChhhHH
Q 017249 28 EELSDKLI--NGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVS-PNLDAIESSLLALLNLAVRNERNKV 104 (375)
Q Consensus 28 ~~Lv~~L~--s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~-~~~~~~~~a~~~L~~L~~~~~~~r~ 104 (375)
..++..++ .++.+.+..+......++.++ ..+..+ +..+|..+++-++. ++......++..|.....+....+.
T Consensus 166 ~lllNafSKw~~~~~c~~aa~~la~~~~~~d--~~~~~~-~~q~ia~~lNa~sKWp~~~~c~~aa~~la~~l~~~~~l~~ 242 (2710)
T PRK14707 166 SLALNAFSKWSDNPDCQAVAPRFAALVASDD--RLRSAM-DAQGVATVLNALCKWPDTPDCGNAVSALAERLADESRLRN 242 (2710)
T ss_pred HHHHHHhhcCCCCchHHHHHHHHHHHhcCCh--hhhccc-chHHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCcHHHHH
Confidence 34444443 455565555555555555544 444444 33456666766654 4444455555566554443444554
Q ss_pred HHHHcCChHHHHHhhcCCChHHHHHHHHHHHH-hhccCCChhHHHhcCChHHHHHHhccCCHHH-HHHHHHHHHHhccCC
Q 017249 105 KIATAGAIPPLVELLKFQNGTLRELAAAAILT-LSAAAPNKPAIAASGAAPLLVQILHSGSVQG-RVDAVTALHYLSTCK 182 (375)
Q Consensus 105 ~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~-Ls~~~~~~~~i~~~~~l~~L~~lL~~~~~~~-~~~a~~~L~~L~~~~ 182 (375)
.+-..|+-..|=.+-+-++..+-..++.+|.. ++.+..-+..+-..+.-..|-.+-+-++..+ ...+..+-..|..++
T Consensus 243 ~~~~q~va~~lN~lsKwp~~~~C~~a~~~lA~rl~~~~~l~~al~~q~vanalNalSKwpd~~vc~~Aa~~la~rl~~d~ 322 (2710)
T PRK14707 243 ELKPQELGNALNALSKWADTPVCAAAASALAERLVDDPGLRKALDPINVTQALNALSKWADLPVCAEAAIALAERLADDP 322 (2710)
T ss_pred hCChHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhhhHHHHHhcCHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHhccH
Confidence 44444544444444455555444455554443 5433333333332333333333334455555 444444444566655
Q ss_pred CCchhhhhcCCcHHHHHHhhhcccchHHHHHHHHHHHHhhCChhhhHHHhhccCcHHHHHHHhcc-CChHHHHHHHHHHH
Q 017249 183 ENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVED-GSLVSTQHAVGALL 261 (375)
Q Consensus 183 ~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~-~~~~~~~~a~~~L~ 261 (375)
+-+.. .+.-.+..+++-|+.=.+...-...+..+-.-++.+++-++.+- ..++..++.-|.. ++......|+..|.
T Consensus 323 ~l~~~-~~~~~~~~~LNalsKWpd~~~C~~Aa~~LA~rl~~d~~l~~~l~--~q~~a~~lNalsKWp~~~~c~~aa~~LA 399 (2710)
T PRK14707 323 ELCKA-LNARGLSTALNALSKWPDNPVCAAAVSALAERLVADPELRKDLE--PQGVSSVLNALSKWPDTPVCAAAASALA 399 (2710)
T ss_pred hhhhc-cchHHHHHHHHHhhcCCCchhHHHHHHHHHHHhccCHhhhcccc--hhHHHHHHhhhhcCCCchHHHHHHHHHH
Confidence 54433 33445555666665533233333444444457777777777664 4567777777764 44445555555555
Q ss_pred HhcccCcHHHHHHHHHcCChHHHHH-HhhhCCHHHHHHHHH-HHHHhhcCChh-hhhhhhhHHHHHHHHhhcCCChHHHH
Q 017249 262 SLCQSCRDKYRQLILKEGAIPGLLR-LTVEGTFEAQERART-LLDLLRDTPQE-KRLSSSVLEKIVYDIAARVDGADKAA 338 (375)
Q Consensus 262 ~l~~~~~~~~~~~l~~~g~v~~L~~-ll~~~~~~~~~~A~~-~L~~l~~~~~~-~~~~~g~~~~l~~~l~~~~~g~~~~~ 338 (375)
.=..++ ++.++.+ +...|..++. +-+=++..+...++. +-..+.++..- +.+..--+-..+..+.. =..++--+
T Consensus 400 ~~l~~d-~~l~~~~-~~Q~van~lnalsKWPd~~~C~~aa~~lA~~la~d~~l~~~~~p~~va~~LnalSK-WPd~p~c~ 476 (2710)
T PRK14707 400 EHVVDD-LELRKGL-DPQGVSNALNALAKWPDLPICGQAVSALAGRLAHDTELCKALDPINVTQALDALSK-WPDTPICG 476 (2710)
T ss_pred HHhccC-hhhhhhc-chhhHHHHHHHhhcCCcchhHHHHHHHHHHHHhccHHHHhhcChHHHHHHHHHhhc-CCCChhHH
Confidence 433343 4666665 4444555555 444455555555555 55566665522 33433323333344432 22235555
Q ss_pred HHHHHHHHHHH
Q 017249 339 ETAKRLLQDMV 349 (375)
Q Consensus 339 ~~a~~~l~~l~ 349 (375)
..|..+...|.
T Consensus 477 ~aa~~La~~l~ 487 (2710)
T PRK14707 477 QTASALAARLA 487 (2710)
T ss_pred HHHHHHHHHhc
Confidence 55555555553
No 290
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=72.88 E-value=25 Score=28.00 Aligned_cols=75 Identities=16% Similarity=0.238 Sum_probs=58.4
Q ss_pred CcHHHHHHHhcc-CChHHHHHHHHHHHHhcccCcHHHHHHHHHcCChHH-HHHHhhh---CCHHHHHHHHHHHHHhhcCC
Q 017249 236 GGILTLVETVED-GSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPG-LLRLTVE---GTFEAQERARTLLDLLRDTP 310 (375)
Q Consensus 236 g~v~~Lv~lL~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~g~v~~-L~~ll~~---~~~~~~~~A~~~L~~l~~~~ 310 (375)
.++..|-.-|.+ .++.++..|+.+|-.+..+++......+.+.+++.. |+.++.. .+..++.....++...+..-
T Consensus 38 ~a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl~e~L~~~i~~~~~~~~~Vk~kil~li~~W~~~f 117 (141)
T cd03565 38 DAVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFIKDVLVKLINPKNNPPTIVQEKVLALIQAWADAF 117 (141)
T ss_pred HHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhhhHHHHHHHcccCCCcHHHHHHHHHHHHHHHHHh
Confidence 355666666664 578888999999999999887778888888899986 8998863 34688999998888776543
No 291
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=72.38 E-value=57 Score=27.34 Aligned_cols=71 Identities=15% Similarity=0.266 Sum_probs=57.7
Q ss_pred HhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhc-CChHHHHHhhCCCCHHHHHHHHHHHHHhhccChh
Q 017249 24 QALIEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAA-GVVQPLVLMLVSPNLDAIESSLLALLNLAVRNER 101 (375)
Q Consensus 24 ~~~l~~Lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~-g~v~~Lv~~L~~~~~~~~~~a~~~L~~L~~~~~~ 101 (375)
+..++.+++...+++..++..|+..+....... ++.. ..+|.|+.+..++++.++..|...+..+....+.
T Consensus 7 Qryl~~Il~~~~~~~~~vr~~Al~~l~~il~qG-------LvnP~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~s 78 (187)
T PF12830_consen 7 QRYLKNILELCLSSDDSVRLAALQVLELILRQG-------LVNPKQCVPTLIALETSPNPSIRSRAYQLLKELHEKHES 78 (187)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcC-------CCChHHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhHH
Confidence 456788888888999999999999998877655 1111 3589999999999999999999999999865443
No 292
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=70.86 E-value=1.5e+02 Score=31.49 Aligned_cols=268 Identities=15% Similarity=0.137 Sum_probs=134.5
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhC-CCCHHHHHHHHHHHHHhhccChhhHH
Q 017249 26 LIEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLV-SPNLDAIESSLLALLNLAVRNERNKV 104 (375)
Q Consensus 26 ~l~~Lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~-~~~~~~~~~a~~~L~~L~~~~~~~r~ 104 (375)
.+.-++..++++.=..+..|+|.+..++..+.+... .-..+++...+.|. +.+-.++..|+-+|..+..+.+....
T Consensus 463 lv~hVfP~f~s~~g~Lrarac~vl~~~~~~df~d~~---~l~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e 539 (1010)
T KOG1991|consen 463 LVNHVFPEFQSPYGYLRARACWVLSQFSSIDFKDPN---NLSEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADE 539 (1010)
T ss_pred HHHHhhHhhcCchhHHHHHHHHHHHHHHhccCCChH---HHHHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhh
Confidence 344455555666677888999999999954411111 11234566667666 77788999999999999886665544
Q ss_pred HHHH--cCChHHHHHhhcCCChHHHHHHHH-HHHHhhccC-CChhHHHhcCChHHHHHHhcc---C---CHHHHHHHHHH
Q 017249 105 KIAT--AGAIPPLVELLKFQNGTLRELAAA-AILTLSAAA-PNKPAIAASGAAPLLVQILHS---G---SVQGRVDAVTA 174 (375)
Q Consensus 105 ~i~~--~g~i~~Lv~lL~~~~~~~~~~a~~-~L~~Ls~~~-~~~~~i~~~~~l~~L~~lL~~---~---~~~~~~~a~~~ 174 (375)
.+-. .+.++.|+.+.+.-.-+....... .+...+..- +.... ........+.+++.. . +..-...|.++
T Consensus 540 ~~~~hvp~~mq~lL~L~ne~End~Lt~vme~iV~~fseElsPfA~e-L~q~La~~F~k~l~~~~~~~~~~ddk~iaA~Gi 618 (1010)
T KOG1991|consen 540 KVSAHVPPIMQELLKLSNEVENDDLTNVMEKIVCKFSEELSPFAVE-LCQNLAETFLKVLQTSEDEDESDDDKAIAASGI 618 (1010)
T ss_pred hHhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHhhchhHHH-HHHHHHHHHHHHHhccCCCCccchHHHHHHHHH
Confidence 4443 234455555554432222222222 222222210 11111 122334555666653 1 12223344444
Q ss_pred HHHhc---cCCCCchhhhh---cCCcHHHHHHhhhcccchHHHHHHHHHHHHhhCC-hhhhHHHhhccCcHHHHHHHhcc
Q 017249 175 LHYLS---TCKENSSPILD---ATAVPPLINLLKDCKKYSKFAEKATALLEILSSS-EEGRIAITNSDGGILTLVETVED 247 (375)
Q Consensus 175 L~~L~---~~~~~~~~i~~---~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~~g~v~~Lv~lL~~ 247 (375)
|..++ .+-++...+.. .-..+.+-.++.+.. ..+-+.++.+..++... ++....+- |..+.+.+.+.+
T Consensus 619 L~Ti~Til~s~e~~p~vl~~le~~~l~vi~~iL~~~i--~dfyeE~~ei~~~~t~~~~~Isp~mW---~ll~li~e~~~~ 693 (1010)
T KOG1991|consen 619 LRTISTILLSLENHPEVLKQLEPIVLPVIGFILKNDI--TDFYEELLEIVSSLTFLSKEISPIMW---GLLELILEVFQD 693 (1010)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhh--HHHHHHHHHHHhhhhhhhcccCHHHH---HHHHHHHHHHhh
Confidence 44433 22233332222 223444445555542 24556677777666542 22222222 455555566655
Q ss_pred CChHHHHHHHHHHHHhcccCcHHHHHHHHHcC-ChHHHH----HHhhh--CCHHHHHHHHHHHHHh
Q 017249 248 GSLVSTQHAVGALLSLCQSCRDKYRQLILKEG-AIPGLL----RLTVE--GTFEAQERARTLLDLL 306 (375)
Q Consensus 248 ~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~g-~v~~L~----~ll~~--~~~~~~~~A~~~L~~l 306 (375)
..-..-....-.|.|....+.+ .+.+.+ -...+. .++.+ +...-.+.|+.++..+
T Consensus 694 ~~~dyf~d~~~~l~N~vt~g~~----~~~s~~~y~~il~~i~~~~l~~e~~~D~d~~~a~kLle~i 755 (1010)
T KOG1991|consen 694 DGIDYFTDMMPALHNYVTYGTP----SLLSNPDYLQILLEIIKKVLTSENGEDSDCESACKLLEVI 755 (1010)
T ss_pred hhHHHHHHHHHHHhhheeeCch----hhhccchHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHH
Confidence 5555566777778877766533 233322 222222 23333 3445556677766655
No 293
>KOG4524 consensus Uncharacterized conserved protein [Function unknown]
Probab=70.11 E-value=26 Score=36.62 Aligned_cols=96 Identities=7% Similarity=0.004 Sum_probs=65.8
Q ss_pred hHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCChhhHHHH--HhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhccCh
Q 017249 23 KQALIEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEF--AAAGVVQPLVLMLVSPNLDAIESSLLALLNLAVRNE 100 (375)
Q Consensus 23 ~~~~l~~Lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~--~~~g~v~~Lv~~L~~~~~~~~~~a~~~L~~L~~~~~ 100 (375)
-.+.+.+-+.+|.+.+...|.+|+.++....--- ....+.+ .-+...+.+++.+...++-+...|+.+|.+++..+.
T Consensus 801 v~kIl~r~~~~LS~e~l~irvkaLdvl~~gl~~L-a~~~n~LlPlvhq~W~~vie~~~~k~~L~v~~a~~~i~~m~~~sg 879 (1014)
T KOG4524|consen 801 VLKILGRGIHLLSHESLRIRVKALDVLSLGLPLL-ATYHNLLLPLVHQTWPSVIECLLCKDPLIVQRAFSCIEQMGKYSG 879 (1014)
T ss_pred HHHHHHHHHHHhcchhHHHHHHHHHHHHhccHHH-hccchhHhHHHHhhhhHHHHHHhcCchHHHHHHHHHHHHHHHHhh
Confidence 3456677788888999999999999887643211 1111222 234679999999999999999999999999986554
Q ss_pred hhHHHHHHcCChHHHHHhh
Q 017249 101 RNKVKIATAGAIPPLVELL 119 (375)
Q Consensus 101 ~~r~~i~~~g~i~~Lv~lL 119 (375)
+.-..=+-..++|.+-.++
T Consensus 880 DFv~sR~l~dvlP~l~~~~ 898 (1014)
T KOG4524|consen 880 DFVASRFLEDVLPWLKHLC 898 (1014)
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 4433333345666665544
No 294
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=70.00 E-value=64 Score=26.97 Aligned_cols=76 Identities=14% Similarity=0.175 Sum_probs=56.1
Q ss_pred HhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhccCh
Q 017249 24 QALIEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIESSLLALLNLAVRNE 100 (375)
Q Consensus 24 ~~~l~~Lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~~~~~~~~~a~~~L~~L~~~~~ 100 (375)
.-.+|.+++=|+..+...+.-|...+..+.... ...+-.-+=...+.+|-..|.+.++++...++.+|..|...++
T Consensus 37 ~~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~-~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~ 112 (183)
T PF10274_consen 37 HHYLPIFFDGLRETEHPYRFLARQGIKDLLERG-GGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVTSSD 112 (183)
T ss_pred hhHHHHHHhhhhccCccHHHHHHHHHHHHHHhc-chhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhh
Confidence 346777777777777777888888888888773 1333222334667778888899999999999999999966444
No 295
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=69.77 E-value=66 Score=31.64 Aligned_cols=146 Identities=14% Similarity=0.141 Sum_probs=89.8
Q ss_pred hHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCCC--------CHHHHHHHHHHHHH
Q 017249 23 KQALIEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSP--------NLDAIESSLLALLN 94 (375)
Q Consensus 23 ~~~~l~~Lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~~--------~~~~~~~a~~~L~~ 94 (375)
-+-++..+++.+-++++..+.+|+..|.. +. .... .+|.++.++..+ +-......++.++.
T Consensus 205 lQlYy~~It~a~~g~~~~~r~eAL~sL~T---Ds---GL~~-----LlPyFv~fIae~vs~ni~~~nL~lL~~lm~m~rS 273 (576)
T KOG2549|consen 205 LQLYYKEITEACTGSDEPLRQEALQSLET---DS---GLQQ-----LLPYFVTFIAEGVSVNIVQNNLELLIYLMRMVRS 273 (576)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhhcc---Cc---cHHH-----HHHHHHHHHhhheeeccccccHHHHHHHHHHHHH
Confidence 34466777777777778877777776643 11 1111 366677776543 45667777778888
Q ss_pred hhccChhhHHHHHHcCChHHHHHhhcCC----------ChHHHHHHHHHHHHhhccCCChhHHHhcCChHHHHHHhccC-
Q 017249 95 LAVRNERNKVKIATAGAIPPLVELLKFQ----------NGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHSG- 163 (375)
Q Consensus 95 L~~~~~~~r~~i~~~g~i~~Lv~lL~~~----------~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~l~~L~~lL~~~- 163 (375)
|.. |+...-.-+-...+|.++.++-+. +-.+|..|+..+..++.+-.....-.....+..+.+.+.+.
T Consensus 274 Ll~-Np~i~lepYlh~L~PSvlTCvVsk~l~~~p~~dnhwaLRDfAA~ll~~i~k~f~~~y~~L~~Rit~tl~k~l~D~~ 352 (576)
T KOG2549|consen 274 LLD-NPNIFLEPYLHQLVPSVLTCVVSKNLCLRPELDNHWALRDFAARLLAQICKNFSTLYNNLQPRITRTLSKALLDNK 352 (576)
T ss_pred Hhc-CCccchhhHHHHHhhHHHHhhhhhhccCCccccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCCC
Confidence 876 555544444445677777665321 23478888888888776644333334455666777777665
Q ss_pred -CHHHHHHHHHHHHHhcc
Q 017249 164 -SVQGRVDAVTALHYLST 180 (375)
Q Consensus 164 -~~~~~~~a~~~L~~L~~ 180 (375)
.....+.++..|..|..
T Consensus 353 ~~~st~YGai~gL~~lg~ 370 (576)
T KOG2549|consen 353 KPLSTHYGAIAGLSELGH 370 (576)
T ss_pred CCchhhhhHHHHHHHhhh
Confidence 34557777777766643
No 296
>KOG2676 consensus Uncharacterized conserved protein [Function unknown]
Probab=69.28 E-value=8 Score=35.55 Aligned_cols=64 Identities=19% Similarity=-0.037 Sum_probs=54.9
Q ss_pred HHHHHHHHHhhCChhhHHHHHhcCChHHHHHhh--CCCCHHHHHHHHHHHHHhhccChhhHHHHHHc
Q 017249 45 AARDIRKVVKKSSLKTRSEFAAAGVVQPLVLML--VSPNLDAIESSLLALLNLAVRNERNKVKIATA 109 (375)
Q Consensus 45 a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L--~~~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~ 109 (375)
..+.|++++... +++++.+.+.||++.++.-. .+.+|-+++-...++++|..++.+++..+.+.
T Consensus 376 vir~ia~lcyk~-~~~qD~vrel~GvaLIlsncnidD~nPfi~e~sI~c~r~Ll~nN~~NQ~~i~km 441 (478)
T KOG2676|consen 376 VIRFIAFLCYKF-STAQDLVRELNGVALILSNCNIDDWNPFIREISILCTRLLLQNNIENQKIIGKM 441 (478)
T ss_pred HHHHHHHHHHhC-CchHHHHHhcCCeEEeeccCccCCCChHHHHHHHHHHHHHHhcchhhHHHHhcC
Confidence 456899999998 89999999999999888754 55678999999999999999998888877653
No 297
>PF12726 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The yeast helicase Sen1 is an RNA polymerase II termination factor for noncoding RNA genes []. The C-terminal domain of Sen1 is essential for cell growth, while the N-terminal domain appears to be dispensible []. This entry represents the N-terminal domain.
Probab=69.09 E-value=76 Score=33.00 Aligned_cols=90 Identities=13% Similarity=0.032 Sum_probs=63.2
Q ss_pred HHHHHHHHHHHHHhhccChhhHHHHHH-cCChHHHHHhhcCCChHHHHHHHHHHHHhhccCCChhHHHhcCChHHHHHHh
Q 017249 82 LDAIESSLLALLNLAVRNERNKVKIAT-AGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQIL 160 (375)
Q Consensus 82 ~~~~~~a~~~L~~L~~~~~~~r~~i~~-~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~l~~L~~lL 160 (375)
..+.....+.|..++.-+++.-..+.. .+....++.++-+++.++.+.|...|..... .+ |=.+.+-.++
T Consensus 495 ~~~~~~~~~il~rls~~~~~~L~~l~~d~~~~~~i~s~lfsp~~~l~qaA~~llk~~~d-~~--------~R~e~i~~ll 565 (727)
T PF12726_consen 495 GQITDLISQILERLSDFDPSHLKELLSDPDAAQAIWSLLFSPDDDLYQAAQDLLKQAFD-VD--------GRLEAIQALL 565 (727)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHcCcchhhHHHhheeCCChHHHHHHHHHHHHHhc-CC--------cHHHHHHHHH
Confidence 356677788888888877777666665 7889999999999999999999999988864 22 3344455555
Q ss_pred ccCCHHHHHHHHHHHHHhcc
Q 017249 161 HSGSVQGRVDAVTALHYLST 180 (375)
Q Consensus 161 ~~~~~~~~~~a~~~L~~L~~ 180 (375)
++.-........+.|..+..
T Consensus 566 ~~~~~~tL~ai~~~l~~~~~ 585 (727)
T PF12726_consen 566 QSNFSPTLSAINWSLRQLTK 585 (727)
T ss_pred HHhHHHHHHHHHHHHHHHHh
Confidence 54444445555555555543
No 298
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=68.90 E-value=25 Score=31.73 Aligned_cols=71 Identities=15% Similarity=0.132 Sum_probs=48.7
Q ss_pred ChHHHHHhhCCCCHHHHHHHHHHHHHhhccChhhH-HHHHHcCChHHHHHhh----c--------CCChHHHHHHHHHHH
Q 017249 69 VVQPLVLMLVSPNLDAIESSLLALLNLAVRNERNK-VKIATAGAIPPLVELL----K--------FQNGTLRELAAAAIL 135 (375)
Q Consensus 69 ~v~~Lv~~L~~~~~~~~~~a~~~L~~L~~~~~~~r-~~i~~~g~i~~Lv~lL----~--------~~~~~~~~~a~~~L~ 135 (375)
++|.++.++.+.+++++..++.+|..+....+... ..+...|..+.+-..+ . ..+..+...+..+|.
T Consensus 120 iiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~~L~ 199 (282)
T PF10521_consen 120 IIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAAYPALL 199 (282)
T ss_pred HHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHHHH
Confidence 68999999999999999999999999997543333 2255556554443333 2 234556667777777
Q ss_pred Hhhc
Q 017249 136 TLSA 139 (375)
Q Consensus 136 ~Ls~ 139 (375)
.|..
T Consensus 200 ~L~~ 203 (282)
T PF10521_consen 200 SLLK 203 (282)
T ss_pred HHHH
Confidence 7743
No 299
>KOG1410 consensus Nuclear transport receptor RanBP16 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=68.76 E-value=1.4e+02 Score=30.41 Aligned_cols=279 Identities=11% Similarity=0.070 Sum_probs=122.5
Q ss_pred hHHHHHHHHhc-CCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCCCCHH----HHHHHHHHHHHhhcc-
Q 017249 25 ALIEELSDKLI-NGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLD----AIESSLLALLNLAVR- 98 (375)
Q Consensus 25 ~~l~~Lv~~L~-s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~~~~~----~~~~a~~~L~~L~~~- 98 (375)
+.+.+..-+|. .+.+-.+..|..+|.++..+. ...-.-.+.+.-..++++|.++.|. +...-+..+..+++-
T Consensus 38 eclskCqlll~~gs~pYs~mlAst~L~Klvs~~--t~lpl~qrldir~Yilnylat~~Pk~~~fvi~sLiQl~arlTK~g 115 (1082)
T KOG1410|consen 38 ECLSKCQLLLERGSYPYSQMLASTCLMKLVSRK--TPLPLEQRLDIRNYILNYLATGAPKLAPFVIQSLIQLFARLTKLG 115 (1082)
T ss_pred HHHHHHHHHHHcCCCchHHHHHHHHHHHHHcCC--CCCcHHHHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHhcc
Confidence 33444444443 344555666666666666554 1111111123334556666554322 222333333333321
Q ss_pred -ChhhHHHHHHcCChHHHHHhhcCCChHHHHHHHHHHHHhhccCCChhHHHhcCChHHHHHHhccCC-HHHHHHHHHHHH
Q 017249 99 -NERNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHSGS-VQGRVDAVTALH 176 (375)
Q Consensus 99 -~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~l~~L~~lL~~~~-~~~~~~a~~~L~ 176 (375)
....+...+--..+..+.+.+...+.+--..++.+|..|...-..........--.....-+++.+ .++-.-++..|.
T Consensus 116 W~d~~k~~y~FRd~v~~~~kfl~~~~ve~~~igv~iLsqLvqemN~~~~~~p~tkHRkias~FRD~sL~~vf~laln~L~ 195 (1082)
T KOG1410|consen 116 WFDQQKDEYVFRDPVDDVTKFLQMDNVEHCIIGVQILSQLVQEMNQADGMDPSTKHRKIASSFRDDSLFDVFSLALNLLK 195 (1082)
T ss_pred ccccccccchhhhhHHHHHHHhccCchHHHHHHHHHHHHHHHHhhCCCCCCcchHHHHHHhhhhhhHHHHHHHHHHHHHH
Confidence 122333344445566677777666655555566666665432100000000000011111122222 234444555555
Q ss_pred HhccCCCCchhhhhcCCcHHHHHHhhhcccc---hHHHHHHHHHHHHhhCChhhhHHHhhccCcHHHHHHHhccCChHHH
Q 017249 177 YLSTCKENSSPILDATAVPPLINLLKDCKKY---SKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVST 253 (375)
Q Consensus 177 ~L~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~---~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~ 253 (375)
....- |-..-.+.|.+..++++--.+-.- .........=+++.-.-...|..+. +...++....+..+-.+..-
T Consensus 196 ~~~~~--nlnd~~q~~L~~~vL~L~l~Cl~FDfiGss~DEssed~ctVQIPTsWRs~f~-d~stlqlfFdly~slp~~~S 272 (1082)
T KOG1410|consen 196 DNVDL--NLNDRAQLGLLMQVLKLNLNCLNFDFIGSSTDESSEDLCTVQIPTSWRSSFL-DSSTLQLFFDLYHSLPPELS 272 (1082)
T ss_pred Hhccc--CcccHhHhhHHHHHHHHHhhhccccccccccccccccccceecCcHHHHHhc-CchHHHHHHHHhccCCchhh
Confidence 44421 111111223333333332211000 0000001111222223345566666 67778888888888777888
Q ss_pred HHHHHHHHHhcccC-----cHHHHHHHHHcCChHHHHHHhhh----CCHHHHHHHHHHHHHhhcCC
Q 017249 254 QHAVGALLSLCQSC-----RDKYRQLILKEGAIPGLLRLTVE----GTFEAQERARTLLDLLRDTP 310 (375)
Q Consensus 254 ~~a~~~L~~l~~~~-----~~~~~~~l~~~g~v~~L~~ll~~----~~~~~~~~A~~~L~~l~~~~ 310 (375)
+.|+.+|..+++-- +++ |..... ..++-..+++.. .||.--..-+++|+.+..+-
T Consensus 273 ~~alsclvqlASvRRsLFN~ae-Ra~yl~-~Lv~Gvk~il~np~~LsD~~nyHeFCRllaRlktNY 336 (1082)
T KOG1410|consen 273 ELALSCLVQLASVRRSLFNGAE-RAKYLQ-HLVEGVKRILENPQGLSDPANYHEFCRLLARLKTNY 336 (1082)
T ss_pred HHHHHHHHHHHHHHHHHhCCHH-HHHHHH-HHHHHHHHHHhCCcCCCCcchHHHHHHHHHHHHhhh
Confidence 89999998887521 112 222211 122233333432 35666677777777776554
No 300
>KOG4231 consensus Intracellular membrane-bound Ca2+-independent phospholipase A2 [Lipid transport and metabolism]
Probab=68.30 E-value=6.9 Score=37.72 Aligned_cols=65 Identities=22% Similarity=0.223 Sum_probs=48.0
Q ss_pred HHHhhcCCChHHHHHHHHHHHHhhccCCChhHHH-hcCChHHHHHHhccCCHHHHHHHHHHHHHhc
Q 017249 115 LVELLKFQNGTLRELAAAAILTLSAAAPNKPAIA-ASGAAPLLVQILHSGSVQGRVDAVTALHYLS 179 (375)
Q Consensus 115 Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~-~~~~l~~L~~lL~~~~~~~~~~a~~~L~~L~ 179 (375)
+-.+....+++++..+..++.+++.+.+++.... .+..-..+++++..+.+++-+.+..++..+.
T Consensus 333 lk~~~a~~n~~l~~qa~~~v~~~~~~~~~r~~~~tsp~l~~~~~~~i~~~~~~~~~~~~~a~~~~~ 398 (763)
T KOG4231|consen 333 LKSLCAHKNPELQRQALLAVGNLAFCLENRRILITSPSLRELLMRLIVTPEPRVNKAAARALAILG 398 (763)
T ss_pred HHHHhcccChHHHHHHHHHHHHheecccccccccCChHHHHHHHHHhcccccccchhhhHHHHHhh
Confidence 3334455689999999999999999988776544 4455567788888887777777777766554
No 301
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=67.79 E-value=1.5e+02 Score=30.37 Aligned_cols=145 Identities=17% Similarity=0.115 Sum_probs=95.8
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHhhC-Ch---hhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhccChhhH
Q 017249 28 EELSDKLINGDLETKIEAARDIRKVVKKS-SL---KTRSEFAAAGVVQPLVLMLVSPNLDAIESSLLALLNLAVRNERNK 103 (375)
Q Consensus 28 ~~Lv~~L~s~~~~~~~~a~~~l~~l~~~~-~~---~~~~~~~~~g~v~~Lv~~L~~~~~~~~~~a~~~L~~L~~~~~~~r 103 (375)
|.|.+-|+-.+.++|..|+..+.++.--. ++ +..+.+.+.. ...|-.+|+++-+.++-.|..-+..... ..+
T Consensus 177 p~l~R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~kQ-f~~l~~LL~d~~p~VRS~a~~gv~k~~s---~fW 252 (1005)
T KOG1949|consen 177 PILWRGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQKQ-FEELYSLLEDPYPMVRSTAILGVCKITS---KFW 252 (1005)
T ss_pred HHHHHhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHHHH-HHHHHHHhcCCCchHHHHHHHHHHHHHH---HHH
Confidence 44556667789999999999998885322 12 2344444433 5678889999999999998887777664 355
Q ss_pred HHHHHcCChHHHHHhh---cC-CChHHHHHHHHHHHHhhccCCChhHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHh
Q 017249 104 VKIATAGAIPPLVELL---KF-QNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYL 178 (375)
Q Consensus 104 ~~i~~~g~i~~Lv~lL---~~-~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~~L 178 (375)
..|-..-.++.|-... .. ...++|......|..+..++.....+ ..++|+|-..|.+.+..++..+...|..+
T Consensus 253 e~iP~~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np~sh~~l--e~~Lpal~~~l~D~se~VRvA~vd~ll~i 329 (1005)
T KOG1949|consen 253 EMIPPTILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDNPLSHPLL--EQLLPALRYSLHDNSEKVRVAFVDMLLKI 329 (1005)
T ss_pred HHcCHHHHHHHHHHHHHHhhhccchheehhHhcCcHHHHcCccchhHH--HHHHHhcchhhhccchhHHHHHHHHHHHH
Confidence 5554443333332222 22 24577878888888887776654443 24567777788888888888887777665
No 302
>PF14663 RasGEF_N_2: Rapamycin-insensitive companion of mTOR RasGEF_N domain
Probab=67.22 E-value=28 Score=26.58 Aligned_cols=42 Identities=14% Similarity=0.070 Sum_probs=34.5
Q ss_pred hHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCChhhHHHHHh
Q 017249 23 KQALIEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAA 66 (375)
Q Consensus 23 ~~~~l~~Lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~ 66 (375)
..=+++.|+..|.++++++...|+.+|.+.+... ...+.++.
T Consensus 6 ~~w~i~lLv~QL~D~~~~V~~~A~~iL~e~c~~~--~~le~~v~ 47 (115)
T PF14663_consen 6 EDWGIELLVTQLYDPSPEVVAAALEILEEACEDK--EYLEYLVS 47 (115)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhch--hhHHHHHH
Confidence 4457899999999999999999999999999887 55555544
No 303
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=65.85 E-value=70 Score=26.79 Aligned_cols=68 Identities=16% Similarity=0.192 Sum_probs=53.0
Q ss_pred cHHHHHHHhccCChHHHHHHHHHHHHhcccCcHHHHHHHHH-cCChHHHHHHhhhCCHHHHHHHHHHHHHhhcCCh
Q 017249 237 GILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILK-EGAIPGLLRLTVEGTFEAQERARTLLDLLRDTPQ 311 (375)
Q Consensus 237 ~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~-~g~v~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~ 311 (375)
.++.++++..+.+..++..|+.++..+...+ ++. ...+|.|+.+..++++.++..|..++..+.+..+
T Consensus 9 yl~~Il~~~~~~~~~vr~~Al~~l~~il~qG-------LvnP~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~ 77 (187)
T PF12830_consen 9 YLKNILELCLSSDDSVRLAALQVLELILRQG-------LVNPKQCVPTLIALETSPNPSIRSRAYQLLKELHEKHE 77 (187)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHhcC-------CCChHHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhH
Confidence 4556667677788889999999988776543 222 2478999999999999999999999999976554
No 304
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=65.04 E-value=69 Score=25.49 Aligned_cols=75 Identities=16% Similarity=0.158 Sum_probs=57.5
Q ss_pred hHhHHHHHHHHhc-CCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHH-HHHhhCC---CCHHHHHHHHHHHHHhhc
Q 017249 23 KQALIEELSDKLI-NGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQP-LVLMLVS---PNLDAIESSLLALLNLAV 97 (375)
Q Consensus 23 ~~~~l~~Lv~~L~-s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~-Lv~~L~~---~~~~~~~~a~~~L~~L~~ 97 (375)
-.+++..|-+.|+ +.++.++..|+..|-.+..+.-......+...+++.. |+.++.. .+..++...+..+...+.
T Consensus 36 ~k~a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl~e~L~~~i~~~~~~~~~Vk~kil~li~~W~~ 115 (141)
T cd03565 36 PKDAVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFIKDVLVKLINPKNNPPTIVQEKVLALIQAWAD 115 (141)
T ss_pred HHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhhhHHHHHHHcccCCCcHHHHHHHHHHHHHHHH
Confidence 3566777888887 4689999999999988888773345556677789987 9999863 346889999988888775
No 305
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=64.15 E-value=74 Score=29.64 Aligned_cols=94 Identities=17% Similarity=0.056 Sum_probs=54.3
Q ss_pred hHHHHHhhcCC-------ChHHHHHHHHHHHHhhccCCChhHHHhcCChHHHHHHhcc----------CCHHHHHHHHHH
Q 017249 112 IPPLVELLKFQ-------NGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHS----------GSVQGRVDAVTA 174 (375)
Q Consensus 112 i~~Lv~lL~~~-------~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~l~~L~~lL~~----------~~~~~~~~a~~~ 174 (375)
+|.++.++... +-.........+..|..++...-..--...++.++.++-. ....++..|+.+
T Consensus 212 lPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl~N~~l~le~Ylh~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~l 291 (343)
T cd08050 212 LPYFVRFIAEGVTVNLDQNLALLIYLMRMVRALLDNPNLHLEPYLHQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAARL 291 (343)
T ss_pred hhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhcCCCCchHHhHHHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHHH
Confidence 56666665432 3455666777778887776642222122366777766522 124789999999
Q ss_pred HHHhccCCCCchhhhhcCCcHHHHHHhhhcc
Q 017249 175 LHYLSTCKENSSPILDATAVPPLINLLKDCK 205 (375)
Q Consensus 175 L~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~~ 205 (375)
|..++..-.....-+...++..+.+.+.+..
T Consensus 292 l~~i~~~f~~~y~~l~~ri~~tl~k~l~d~~ 322 (343)
T cd08050 292 LAQICRKFSTSYNTLQPRITRTLLKALLDPK 322 (343)
T ss_pred HHHHHHHcCCCCCcHHHHHHHHHHHHHcCCC
Confidence 9999854322222233345556666666544
No 306
>PF08216 CTNNBL: Catenin-beta-like, Arm-motif containing nuclear; InterPro: IPR013180 This domain is found in eukaryotic proteins. A human nuclear protein with this domain (Q8WYA6 from SWISSPROT) is thought to have a role in apoptosis [].
Probab=63.89 E-value=10 Score=28.60 Aligned_cols=42 Identities=24% Similarity=0.378 Sum_probs=36.1
Q ss_pred HHHHHHHHHHhhccChhhHHHHHHcCChHHHHHhhcCCChHHH
Q 017249 85 IESSLLALLNLAVRNERNKVKIATAGAIPPLVELLKFQNGTLR 127 (375)
Q Consensus 85 ~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~ 127 (375)
....++.+..|+. .|+....+++.|+++.|+.+|.+.+.++.
T Consensus 63 Ld~~Ik~l~~La~-~P~LYp~lv~l~~v~sL~~LL~HeN~DIa 104 (108)
T PF08216_consen 63 LDEEIKKLSVLAT-APELYPELVELGAVPSLLGLLSHENTDIA 104 (108)
T ss_pred HHHHHHHHHHccC-ChhHHHHHHHcCCHHHHHHHHCCCCccee
Confidence 5677788888888 68899999999999999999998877654
No 307
>PF08216 CTNNBL: Catenin-beta-like, Arm-motif containing nuclear; InterPro: IPR013180 This domain is found in eukaryotic proteins. A human nuclear protein with this domain (Q8WYA6 from SWISSPROT) is thought to have a role in apoptosis [].
Probab=63.46 E-value=9.3 Score=28.80 Aligned_cols=41 Identities=20% Similarity=0.259 Sum_probs=33.5
Q ss_pred HHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCCCCHHHHH
Q 017249 44 EAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIE 86 (375)
Q Consensus 44 ~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~~~~~~~~ 86 (375)
..++.+..++..+ +.-..+++.|+++.|+.+|.+++.++..
T Consensus 65 ~~Ik~l~~La~~P--~LYp~lv~l~~v~sL~~LL~HeN~DIai 105 (108)
T PF08216_consen 65 EEIKKLSVLATAP--ELYPELVELGAVPSLLGLLSHENTDIAI 105 (108)
T ss_pred HHHHHHHHccCCh--hHHHHHHHcCCHHHHHHHHCCCCcceeh
Confidence 4567777777766 7888899999999999999998876644
No 308
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=62.74 E-value=1.5e+02 Score=28.46 Aligned_cols=237 Identities=12% Similarity=0.003 Sum_probs=112.1
Q ss_pred HHHHhhHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCCC-CHHHHHHHHHHHHHhh
Q 017249 18 AWNQRKQALIEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSP-NLDAIESSLLALLNLA 96 (375)
Q Consensus 18 ~~~~~~~~~l~~Lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~~-~~~~~~~a~~~L~~L~ 96 (375)
+....+...+..|+.++.|+|+..+...-.+|.++-..- ...|..+ .......+.+++... ........+..++.+.
T Consensus 126 ~~~~i~~~fi~~Ll~l~~S~D~rER~~lk~~l~~iy~k~-~~~r~~I-r~~i~~~~~~fi~e~~~~~gI~elLeil~sii 203 (409)
T PF01603_consen 126 AKKYIDQKFIKKLLELFDSPDPRERDYLKTILHRIYGKF-PNLRSFI-RKSINNIFYRFIYETERHNGIAELLEILGSII 203 (409)
T ss_dssp CTTTS-HHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHH--TTTHHHH-HHHHHHHHHHHHHTTS--STHHHHHHHHHHHH
T ss_pred HHHHcCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh-hhhHHHH-HHHHHHHHHHHhcCcccccCHHHHHHHHHHHH
Confidence 344567788999999999999999999888888877665 3445433 344456666766543 3445667777777777
Q ss_pred ccCh-hhHHHHHHcCChHHHHHhhcCCC-hHHHHHHHHHHHHhhccCCChhHHHhcCChHHHHHHhccCCHHHHHHHHHH
Q 017249 97 VRNE-RNKVKIATAGAIPPLVELLKFQN-GTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHSGSVQGRVDAVTA 174 (375)
Q Consensus 97 ~~~~-~~r~~i~~~g~i~~Lv~lL~~~~-~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~ 174 (375)
.+.. ..+.... .=....|+.+.+.+. ......-..++......++.-. ...+..|++.--..+..-...-+.-
T Consensus 204 ~gf~~plk~eh~-~fl~~vllPLh~~~~~~~y~~~L~~~~~~f~~kdp~l~----~~~i~~llk~WP~t~s~Kev~FL~e 278 (409)
T PF01603_consen 204 NGFAVPLKEEHK-QFLRKVLLPLHKSPHLSSYHQQLSYCVVQFLEKDPSLA----EPVIKGLLKHWPKTNSQKEVLFLNE 278 (409)
T ss_dssp TT--SS--HHHH-HHHHHTTGGGGGSTGGGGTHHHHHHHHHHHHHH-GGGH----HHHHHHHHHHS-SS-HHHHHHHHHH
T ss_pred hccCCCCcHHHH-HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCchhH----HHHHHHHHHhCCCCCchhHHHHHHH
Confidence 6522 1221111 001224445555442 2223344444444433222100 1112222222222232222222333
Q ss_pred HHHhccC-CCCchhhhhcCCcHHHHHHhhhcccchHHHHHHHHHHHHhhCChhhhHHHhhcc-CcHHHHHHHhc-----c
Q 017249 175 LHYLSTC-KENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSD-GGILTLVETVE-----D 247 (375)
Q Consensus 175 L~~L~~~-~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~-g~v~~Lv~lL~-----~ 247 (375)
+..+... ++..-.-+....+..+.+.+.+. +-.+.+.|+. +..++.-...+.... ..++.++..|. +
T Consensus 279 l~~il~~~~~~~f~~i~~~lf~~la~ci~S~--h~qVAErAl~----~w~n~~~~~li~~~~~~i~p~i~~~L~~~~~~H 352 (409)
T PF01603_consen 279 LEEILEVLPPEEFQKIMVPLFKRLAKCISSP--HFQVAERALY----FWNNEYFLSLISQNSRVILPIIFPALYRNSKNH 352 (409)
T ss_dssp HHHHHTT--HHHHHHHHHHHHHHHHHHHTSS--SHHHHHHHHG----GGGSHHHHHHHHCTHHHHHHHHHHHHSSTTSS-
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHHHhCCC--CHHHHHHHHH----HHCCHHHHHHHHhChHHHHHHHHHHHHHHHHHH
Confidence 3333321 11100001111233333334433 3355554442 333333333222111 24555565552 4
Q ss_pred CChHHHHHHHHHHHHhcccC
Q 017249 248 GSLVSTQHAVGALLSLCQSC 267 (375)
Q Consensus 248 ~~~~~~~~a~~~L~~l~~~~ 267 (375)
-+..++..|..++..+..-+
T Consensus 353 Wn~~Vr~~a~~vl~~l~~~d 372 (409)
T PF01603_consen 353 WNQTVRNLAQNVLKILMEMD 372 (409)
T ss_dssp SSTTHHHHHHHHHHHHHTTS
T ss_pred hhHHHHHHHHHHHHHHHHhC
Confidence 57889999999998887766
No 309
>PF01365 RYDR_ITPR: RIH domain; InterPro: IPR000699 Ryanodine and Inositol 1,4,5-trisphosphate (IP3) receptors are intracellular Ca2+-release channels. They become activated upon binding of their respective ligands, Ca2+ and IP3, opening an intrgral Ca2+ channel. Ryanodine receptor activation is a key component of muscular contraction, their activation allowing release of Ca2+ from the sarcoplasmic reticulum. Mutations in the ryanodine receptor lead to malignant hyperthermia susceptibility the and central core disease of muscle.; GO: 0005262 calcium channel activity, 0070588 calcium ion transmembrane transport, 0016020 membrane; PDB: 1N4K_A 2XOA_A 3UJ0_B 3UJ4_A 3T8S_A.
Probab=61.21 E-value=60 Score=27.61 Aligned_cols=116 Identities=16% Similarity=0.059 Sum_probs=45.9
Q ss_pred HHHHhhHhHHHHHHHHhcC---CC---------------HHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCC
Q 017249 18 AWNQRKQALIEELSDKLIN---GD---------------LETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVS 79 (375)
Q Consensus 18 ~~~~~~~~~l~~Lv~~L~s---~~---------------~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~ 79 (375)
..-+...+....++..|+. .. .++...+...|..++.++ ++++..+.+. ++.++..+..
T Consensus 36 Q~llrnl~i~~~v~~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lL~~f~~~n-~~NQ~~l~~~--~~~l~~~~~~ 112 (207)
T PF01365_consen 36 QKLLRNLGIHELVLDLLKNPFDQFQGDFKDLGDQKDSSFKELFRLCYRLLRQFCRGN-RENQKYLFKH--LDFLISIFMQ 112 (207)
T ss_dssp HHHHHHTTHHHHHHHHHHHHCTS---------STGGHCHHHHHHHHHHHHHHHHTT--HHHHHHHHHH--HH-----HHC
T ss_pred HHHHHHHHHHHHHHHHhhhhhhcccchhhhhcchhccHHHHHHHHHHHHHHHHHHhC-HHHHHHHHHH--HhHHHHHHHH
Confidence 3355667777788888862 22 345677888999999998 8888888765 2222333322
Q ss_pred CCHHHHHHHHHHHHHhhccChhhHHHHHHcCChHHHHHhhcCCChHHHHHHHHHHHHhhc
Q 017249 80 PNLDAIESSLLALLNLAVRNERNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSA 139 (375)
Q Consensus 80 ~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~ 139 (375)
.....-..+..+|..+-.++++....+.+.. +..++.++....... .-+..|..++.
T Consensus 113 ~~~~~~~~~~d~l~~i~~dN~~L~~~i~e~~-I~~~i~ll~~~gr~~--~~L~~L~~lc~ 169 (207)
T PF01365_consen 113 LQIGYGLGALDVLTEIFRDNPELCESISEEH-IEKFIELLRKHGRQP--RYLDFLSSLCV 169 (207)
T ss_dssp CCH-TTHHHHHHHHHHHTT-----------------------------------------
T ss_pred hhccCCchHHHHHHHHHHCcHHHHHHhhHHH-HHHHHHHHHHcCCCh--HHHHHHhhhcc
Confidence 2212223456677777777777777766554 888888887633222 22344555544
No 310
>PF12726 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The yeast helicase Sen1 is an RNA polymerase II termination factor for noncoding RNA genes []. The C-terminal domain of Sen1 is essential for cell growth, while the N-terminal domain appears to be dispensible []. This entry represents the N-terminal domain.
Probab=60.42 E-value=2.2e+02 Score=29.69 Aligned_cols=158 Identities=13% Similarity=0.024 Sum_probs=97.8
Q ss_pred cCChHHHHHHhccCCHHHHHHHHHHHHHhccCCCCchhhhhcCCcHHHHHHhhhcccchHHHHHHHHHHHHhhC-Chhhh
Q 017249 150 SGAAPLLVQILHSGSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSS-SEEGR 228 (375)
Q Consensus 150 ~~~l~~L~~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~-~~~~~ 228 (375)
......+...+..++.......+.++.+++.-......-... -...-..-.... -..+......+|..++. .++..
T Consensus 440 ~~lW~~l~~~~~~~~~~la~~lL~~~~~l~~l~~~~~~~~~~-~~~~~~~~~N~~--~~~~~~~~~~il~rls~~~~~~L 516 (727)
T PF12726_consen 440 PNLWKALLKSLDSDNPDLAKALLKSLSPLIGLEKFPPKKEKD-ELDPAKTQFNKS--LGQITDLISQILERLSDFDPSHL 516 (727)
T ss_pred HHHHHHHHHhhcCCChHHHHHHHHHHHHhccccccCCccccc-CcchHHHHHHHH--HHHHHHHHHHHHHHHhcCCHHHH
Confidence 345667777778888888888888888887542211111111 111111111111 22456777888999986 68888
Q ss_pred HHHhhccCcHHHHHHHhccCChHHHHHHHHHHHHhcccCc-HHHHHHHHHcCCh-------HHHHHHhh----hCCHHHH
Q 017249 229 IAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCR-DKYRQLILKEGAI-------PGLLRLTV----EGTFEAQ 296 (375)
Q Consensus 229 ~~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~-~~~~~~l~~~g~v-------~~L~~ll~----~~~~~~~ 296 (375)
..++.+.+....++.++-++++.+.+.|..+|........ -++...+.+...- ..|-++.. .+-|+.-
T Consensus 517 ~~l~~d~~~~~~i~s~lfsp~~~l~qaA~~llk~~~d~~~R~e~i~~ll~~~~~~tL~ai~~~l~~~~~~~~~~p~pr~v 596 (727)
T PF12726_consen 517 KELLSDPDAAQAIWSLLFSPDDDLYQAAQDLLKQAFDVDGRLEAIQALLQSNFSPTLSAINWSLRQLTKLKFFEPCPRMV 596 (727)
T ss_pred HHHHcCcchhhHHHhheeCCChHHHHHHHHHHHHHhcCCcHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhhcchHHHH
Confidence 8898888999999999999999999999999998876432 2444445443322 22222222 2234555
Q ss_pred HHHHHHHHHhhcCC
Q 017249 297 ERARTLLDLLRDTP 310 (375)
Q Consensus 297 ~~A~~~L~~l~~~~ 310 (375)
+....+|..||...
T Consensus 597 r~~~DIi~~Lcdp~ 610 (727)
T PF12726_consen 597 RCLMDIIEVLCDPV 610 (727)
T ss_pred HHHHHHHHHHcCCC
Confidence 55555666666554
No 311
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=59.70 E-value=1.6e+02 Score=27.81 Aligned_cols=218 Identities=13% Similarity=-0.002 Sum_probs=100.5
Q ss_pred CHHHHHHHHHHHHHhhccChhhHHHHHHcC---ChHHHHHhhcCC--ChHHHHHHHHHHHHhhccCCChhHHHhcCChHH
Q 017249 81 NLDAIESSLLALLNLAVRNERNKVKIATAG---AIPPLVELLKFQ--NGTLRELAAAAILTLSAAAPNKPAIAASGAAPL 155 (375)
Q Consensus 81 ~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g---~i~~Lv~lL~~~--~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~l~~ 155 (375)
+.++..+|+++|+.+.. ++..-..+-..- .+...+..+..+ +..+.... ++-|+... ....+.....+..
T Consensus 59 ~~~L~~qALkll~~~l~-~~~i~~~l~~d~~~~~i~~~i~~l~~~~~~K~i~~~~---l~~ls~Q~-f~~~~~~~~~~~~ 133 (372)
T PF12231_consen 59 DSRLVIQALKLLGFFLY-HPEIVSTLSDDFASFIIDHSIESLQNPNSPKSICTHY---LWCLSDQK-FSPKIMTSDRVER 133 (372)
T ss_pred chHHHHHHHHHHHHHHc-cHHHHhhCChHHHHHHHHHHHHHHcCCCCCHHHHHHH---HHHHHcCC-CCCcccchhhHHH
Confidence 57889999999999987 444443333321 234445555444 33334344 44443322 1122333444445
Q ss_pred HHHHh---c--cCCHHHHHHHHHHHHHhccCCCCchhhhh-c-CCcHHHHHHhhhcccchHHHHHHHHHHHHhhC--Ch-
Q 017249 156 LVQIL---H--SGSVQGRVDAVTALHYLSTCKENSSPILD-A-TAVPPLINLLKDCKKYSKFAEKATALLEILSS--SE- 225 (375)
Q Consensus 156 L~~lL---~--~~~~~~~~~a~~~L~~L~~~~~~~~~i~~-~-g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~--~~- 225 (375)
++..+ . -++..+....+.++.+|....+ ..+.. . --++.++..+-+.. ..++..|..++..+.. .+
T Consensus 134 l~~~l~~i~~~~~s~si~~erL~i~~~ll~q~p--~~M~~~~~~W~~~l~~~l~~~~--k~ir~~a~~l~~~~~~~l~~~ 209 (372)
T PF12231_consen 134 LLAALHNIKNRFPSKSIISERLNIYKRLLSQFP--QQMIKHADIWFPILFPDLLSSA--KDIRTKAISLLLEAKKCLGPN 209 (372)
T ss_pred HHHHHHHhhccCCchhHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhhcc--hHHHHHHHHHHHHHHHHhChh
Confidence 55444 2 3456778888889888875421 12222 1 24555555554432 2344445444443321 11
Q ss_pred -hhhHHHhh------ccC-----cHHHHHHHhccCChHHHHHHHHHHHHhcccCcHHHHHHHHHcCChHHHHHHhhhCCH
Q 017249 226 -EGRIAITN------SDG-----GILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTF 293 (375)
Q Consensus 226 -~~~~~~~~------~~g-----~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~g~v~~L~~ll~~~~~ 293 (375)
...+.+.. ..+ ..+.|..++.+.+......=+|...-+.-+...-..+. .-...+...-..+.++++
T Consensus 210 ~~~s~~~~~~~~~~~~~~~~~~~~~~~L~~mi~~~~~~~~a~~iW~~~i~LL~~~~~~~w~-~~n~wL~v~e~cFn~~d~ 288 (372)
T PF12231_consen 210 KELSKSVLEDLQRSLENGKLIQLYCERLKEMIKSKDEYKLAMQIWSVVILLLGSSRLDSWE-HLNEWLKVPEKCFNSSDP 288 (372)
T ss_pred HHHHHHHHHHhccccccccHHHHHHHHHHHHHhCcCCcchHHHHHHHHHHHhCCchhhccH-hHhHHHHHHHHHhcCCCH
Confidence 11111110 112 22334455554222111111222221111221000000 012233444446678899
Q ss_pred HHHHHHHHHHHHhhc
Q 017249 294 EAQERARTLLDLLRD 308 (375)
Q Consensus 294 ~~~~~A~~~L~~l~~ 308 (375)
.+|..|-.+-+.+..
T Consensus 289 ~~k~~A~~aW~~liy 303 (372)
T PF12231_consen 289 QVKIQAFKAWRRLIY 303 (372)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999888877754
No 312
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=58.49 E-value=3.5e+02 Score=31.46 Aligned_cols=234 Identities=9% Similarity=0.049 Sum_probs=128.2
Q ss_pred HhHHHHHHHHhc-CCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhC----CCCHHHHHHHHHHHHHhhcc
Q 017249 24 QALIEELSDKLI-NGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLV----SPNLDAIESSLLALLNLAVR 98 (375)
Q Consensus 24 ~~~l~~Lv~~L~-s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~----~~~~~~~~~a~~~L~~L~~~ 98 (375)
.+.+.++...+. +.+.+++...+.++.++.... ..+ ++. |.+.+...+. ..++.+...|...+..+..+
T Consensus 1181 kefLkPfe~im~~s~~~eVrE~ILeCv~qmI~s~-~~n----IkS-GWktIF~VLs~aa~d~~e~iV~lAFetl~~I~~d 1254 (1780)
T PLN03076 1181 NEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSR-VNN----VKS-GWKSMFMVFTTAAYDDHKNIVLLAFEIIEKIIRE 1254 (1780)
T ss_pred HHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHH-Hhh----hhc-CcHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHh
Confidence 467777777665 677889999999999887655 211 222 5777777665 44678888999988877753
Q ss_pred ChhhHHHHHH--cCC----hHHHHHhhcCC-ChHHHHHHHHHHHHhhcc----CC------------------------C
Q 017249 99 NERNKVKIAT--AGA----IPPLVELLKFQ-NGTLRELAAAAILTLSAA----AP------------------------N 143 (375)
Q Consensus 99 ~~~~r~~i~~--~g~----i~~Lv~lL~~~-~~~~~~~a~~~L~~Ls~~----~~------------------------~ 143 (375)
.- ..+.. .+. |..|..+.... +.++--.|+..||+++.. .- .
T Consensus 1255 ~f---~~l~~~~~~~F~DlV~cL~~Fa~q~~~~nISL~AI~lL~~~~~~La~~~~~~~~~~~~~~~~~~~s~~~~~~~~~ 1331 (1780)
T PLN03076 1255 YF---PYITETETTTFTDCVNCLIAFTNSRFNKDISLNAIAFLRFCATKLAEGDLGSSSRNKDKEAPPSSPQSGKDGKQE 1331 (1780)
T ss_pred hh---hhccccchhHHHHHHHHHHHHHhCcCcccccHHHHHHHHHHHHHHHhcccccccccccccccccccccccccccc
Confidence 11 11111 123 33344443333 455666777777765211 00 0
Q ss_pred hhHHHh-----cCChH---HHHHHhccCCHHHHHHHHHHHHHhccC--C---CCchhhhhcCCcHHHHHHhhhcc-----
Q 017249 144 KPAIAA-----SGAAP---LLVQILHSGSVQGRVDAVTALHYLSTC--K---ENSSPILDATAVPPLINLLKDCK----- 205 (375)
Q Consensus 144 ~~~i~~-----~~~l~---~L~~lL~~~~~~~~~~a~~~L~~L~~~--~---~~~~~i~~~g~i~~Lv~ll~~~~----- 205 (375)
...+.. ...++ .|.++..+...+++..|+.+|..+-.. . ..-+..+=.+++.+++..++...
T Consensus 1332 ~~~~~~~~~~~~lW~pLL~~Ls~l~~D~RlEVR~~ALqtLF~iL~~yG~~Fs~~~W~~if~~VLFPIFd~l~~~~~~~~~ 1411 (1780)
T PLN03076 1332 SGEFTDKDDHLYFWFPLLAGLSELSFDPRPEIRKSALQVLFDTLRNHGHLFSLPLWERVFESVLFPIFDYVRHAIDPSGG 1411 (1780)
T ss_pred ccccccchhHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHhhccccc
Confidence 000000 11222 334445677899999999998876532 1 11222222356666666654210
Q ss_pred ---------------cchH-HHHHHHHHHHHhhCC----hhhhHHHhhccCcHHHHHHHhccCChHHHHHHHHHHHHhcc
Q 017249 206 ---------------KYSK-FAEKATALLEILSSS----EEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQ 265 (375)
Q Consensus 206 ---------------~~~~-~~~~a~~~L~~l~~~----~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~ 265 (375)
+... +.+.+..+|.+++.- -+.-..++ .+.+..|...+...++.+...++.+|.+|..
T Consensus 1412 ~~~~~~~~~~~~~~~e~~~Wl~eT~~~AL~~lvdLft~fFd~L~~~L--~~~l~ll~~ci~q~n~~la~ig~~~l~~li~ 1489 (1780)
T PLN03076 1412 DEPEGQGVDGDQGELDQDAWLYETCTLALQLVVDLFVKFYPTVNPLL--KKVLMLLVSFIKRPHQSLAGIGIAAFVRLMS 1489 (1780)
T ss_pred cccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHcCchHHHHHHHHHHHHHHHH
Confidence 0001 124444555555432 12222233 2444555555566788888888888888876
Q ss_pred cCc
Q 017249 266 SCR 268 (375)
Q Consensus 266 ~~~ 268 (375)
...
T Consensus 1490 ~ng 1492 (1780)
T PLN03076 1490 NAG 1492 (1780)
T ss_pred Hhh
Confidence 543
No 313
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]
Probab=57.52 E-value=90 Score=32.12 Aligned_cols=181 Identities=16% Similarity=0.064 Sum_probs=0.0
Q ss_pred HHHhccCCHHHHHHHHHHHHHhccCCCCchhhhhcCCcHHHHHHhhhcc-cchHHHHHHHHHHHHhhCChhhhHHHhh--
Q 017249 157 VQILHSGSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDCK-KYSKFAEKATALLEILSSSEEGRIAITN-- 233 (375)
Q Consensus 157 ~~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~-- 233 (375)
+.+|-..++---..++.+|.++|... .+..... +++.|-.++-++- ++..++-..-+.+..|.......+.++.
T Consensus 217 ~~LlvqesPvh~lk~lEtLls~c~KK-sk~~a~~--~l~~LkdlfI~~LLPdRKLk~f~qrp~~~l~~~~~~~k~Ll~Wy 293 (988)
T KOG2038|consen 217 MTLLVQESPVHNLKSLETLLSSCKKK-SKRDALQ--ALPALKDLFINGLLPDRKLKYFSQRPLLELTNKRLRDKILLMWY 293 (988)
T ss_pred HHHhhcccchhHHHHHHHHHHHHhhh-hHHHHHH--HHHHHHHHHHhccCcchhhHHHhhChhhhccccccccceehHHH
Q ss_pred --------ccCcHHHHHHHhccCChHHHHHHHHHHHHhcccCcHHHHHHHHHcCChHHHHHHhhhCCHHHHHHHHHHHHH
Q 017249 234 --------SDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDL 305 (375)
Q Consensus 234 --------~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~~~~~A~~~L~~ 305 (375)
...+|..|..+..++=..++..++.++..|..+.++ .+..++..||.-+.+....+--.|...|..
T Consensus 294 fE~~LK~ly~rfievLe~lS~D~L~~vk~raL~ti~~lL~~kPE------qE~~LL~~lVNKlGDpqnKiaskAsylL~~ 367 (988)
T KOG2038|consen 294 FEHELKILYFRFIEVLEELSKDPLEEVKKRALKTIYDLLTNKPE------QENNLLVLLVNKLGDPQNKIASKASYLLEG 367 (988)
T ss_pred HHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHhCCcH------HHHHHHHHHHHhcCCcchhhhhhHHHHHHH
Q ss_pred hhcCChhhhhhhhhHHHHHHHHhhcCCChHHHHHHHHHHHHHHH
Q 017249 306 LRDTPQEKRLSSSVLEKIVYDIAARVDGADKAAETAKRLLQDMV 349 (375)
Q Consensus 306 l~~~~~~~~~~~g~~~~l~~~l~~~~~g~~~~~~~a~~~l~~l~ 349 (375)
|....| .+..-++..+.+++..+.-+ .++.=-|.-.|..++
T Consensus 368 L~~~HP--nMK~Vvi~EIer~~FRpn~~-~ra~Yyav~fLnQ~~ 408 (988)
T KOG2038|consen 368 LLAKHP--NMKIVVIDEIERLAFRPNVS-ERAHYYAVIFLNQMK 408 (988)
T ss_pred HHhhCC--cceeehHHHHHHHHcccCcc-ccceeehhhhhhhhH
No 314
>PRK14707 hypothetical protein; Provisional
Probab=57.39 E-value=3.9e+02 Score=31.59 Aligned_cols=276 Identities=15% Similarity=0.083 Sum_probs=139.4
Q ss_pred HHHHHHHHhc--CCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCC-CCHHHHHHHHHHHHHhhccChhh
Q 017249 26 LIEELSDKLI--NGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVS-PNLDAIESSLLALLNLAVRNERN 102 (375)
Q Consensus 26 ~l~~Lv~~L~--s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~-~~~~~~~~a~~~L~~L~~~~~~~ 102 (375)
.|..++..++ .+++..+ .|+..|....... +..+..| +..++-..++.|+. ++..++..++..|..=..+++..
T Consensus 206 ~ia~~lNa~sKWp~~~~c~-~aa~~la~~l~~~-~~l~~~~-~~q~va~~lN~lsKwp~~~~C~~a~~~lA~rl~~~~~l 282 (2710)
T PRK14707 206 GVATVLNALCKWPDTPDCG-NAVSALAERLADE-SRLRNEL-KPQELGNALNALSKWADTPVCAAAASALAERLVDDPGL 282 (2710)
T ss_pred HHHHHHHHHhcCCCChhHH-HHHHHHHHHHcCc-HHHHHhC-ChHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhhhHHH
Confidence 3444444443 3445544 4444444444443 2444433 23345556666644 45556666666665533335555
Q ss_pred HHHHHHcCChHHHHHhhcCCChHHHHHHHHHH-HHhhccCCChhHHHhcCChHHHHHHh-ccCCH-HHHHHHHHHHHHhc
Q 017249 103 KVKIATAGAIPPLVELLKFQNGTLRELAAAAI-LTLSAAAPNKPAIAASGAAPLLVQIL-HSGSV-QGRVDAVTALHYLS 179 (375)
Q Consensus 103 r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L-~~Ls~~~~~~~~i~~~~~l~~L~~lL-~~~~~-~~~~~a~~~L~~L~ 179 (375)
+..+-..++-..|=.+-+-++..+-..|+..| ..|..+.+-+..+-..+ +.-.+.-| +=++. .....|..+-..|+
T Consensus 283 ~~al~~q~vanalNalSKwpd~~vc~~Aa~~la~rl~~d~~l~~~~~~~~-~~~~LNalsKWpd~~~C~~Aa~~LA~rl~ 361 (2710)
T PRK14707 283 RKALDPINVTQALNALSKWADLPVCAEAAIALAERLADDPELCKALNARG-LSTALNALSKWPDNPVCAAAVSALAERLV 361 (2710)
T ss_pred HHhcCHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHhccHhhhhccchHH-HHHHHHHhhcCCCchhHHHHHHHHHHHhc
Confidence 55554444444444444555555444444444 44555433333332223 33333333 33443 34444444445667
Q ss_pred cCCCCchhhhhcCCcHHHHHHhhhcccchHHHHHHHHHH-HHhhCChhhhHHHhhccCcHHHHHHHhcc-CChHHHHHHH
Q 017249 180 TCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALL-EILSSSEEGRIAITNSDGGILTLVETVED-GSLVSTQHAV 257 (375)
Q Consensus 180 ~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L-~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~-~~~~~~~~a~ 257 (375)
.+++.+..+- ..++..+++-++.=. +......+...| ..+..+++-++.+- ...|..++.-|.. ++..+...++
T Consensus 362 ~d~~l~~~l~-~q~~a~~lNalsKWp-~~~~c~~aa~~LA~~l~~d~~l~~~~~--~Q~van~lnalsKWPd~~~C~~aa 437 (2710)
T PRK14707 362 ADPELRKDLE-PQGVSSVLNALSKWP-DTPVCAAAASALAEHVVDDLELRKGLD--PQGVSNALNALAKWPDLPICGQAV 437 (2710)
T ss_pred cCHhhhcccc-hhHHHHHHhhhhcCC-CchHHHHHHHHHHHHhccChhhhhhcc--hhhHHHHHHHhhcCCcchhHHHHH
Confidence 6666555543 345556666665533 223344444444 46667777777765 4667777766654 5566666666
Q ss_pred HHHHHhcccCcHHHHHHHHHcCChHHHHHHhhh-CCHHHHHHHHHHHHHhhcCC
Q 017249 258 GALLSLCQSCRDKYRQLILKEGAIPGLLRLTVE-GTFEAQERARTLLDLLRDTP 310 (375)
Q Consensus 258 ~~L~~l~~~~~~~~~~~l~~~g~v~~L~~ll~~-~~~~~~~~A~~~L~~l~~~~ 310 (375)
..|..-..++ .+.++.+--.++...|--+.+= .+|...+.|..+...|.+..
T Consensus 438 ~~lA~~la~d-~~l~~~~~p~~va~~LnalSKWPd~p~c~~aa~~La~~l~~~~ 490 (2710)
T PRK14707 438 SALAGRLAHD-TELCKALDPINVTQALDALSKWPDTPICGQTASALAARLAHER 490 (2710)
T ss_pred HHHHHHHhcc-HHHHhhcChHHHHHHHHHhhcCCCChhHHHHHHHHHHHhcccH
Confidence 6666544444 3556555333433333223332 34555555555666666544
No 315
>KOG2676 consensus Uncharacterized conserved protein [Function unknown]
Probab=56.89 E-value=15 Score=33.93 Aligned_cols=61 Identities=11% Similarity=0.058 Sum_probs=52.2
Q ss_pred HHHHHHHhhccChhhHHHHHHcCChHHHHHhh--cCCChHHHHHHHHHHHHhhccC-CChhHHH
Q 017249 88 SLLALLNLAVRNERNKVKIATAGAIPPLVELL--KFQNGTLRELAAAAILTLSAAA-PNKPAIA 148 (375)
Q Consensus 88 a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL--~~~~~~~~~~a~~~L~~Ls~~~-~~~~~i~ 148 (375)
..+.+++|+...+++++++.+.||++.+++-. ...+|-+++..+.|+.+|..+. +|+..+.
T Consensus 376 vir~ia~lcyk~~~~qD~vrel~GvaLIlsncnidD~nPfi~e~sI~c~r~Ll~nN~~NQ~~i~ 439 (478)
T KOG2676|consen 376 VIRFIAFLCYKFSTAQDLVRELNGVALILSNCNIDDWNPFIREISILCTRLLLQNNIENQKIIG 439 (478)
T ss_pred HHHHHHHHHHhCCchHHHHHhcCCeEEeeccCccCCCChHHHHHHHHHHHHHHhcchhhHHHHh
Confidence 66789999999999999999999999988754 4558999999999999999875 4777765
No 316
>PF12463 DUF3689: Protein of unknown function (DUF3689) ; InterPro: IPR022162 This family of proteins is found in eukaryotes. Proteins in this family are typically between 399 and 797 amino acids in length.
Probab=56.72 E-value=1.1e+02 Score=27.89 Aligned_cols=88 Identities=17% Similarity=0.198 Sum_probs=67.1
Q ss_pred HHhhHhHHHHHHHHhc--CCCHHHHHHHHHHHHHHHhhCCh-hhHHHHHhcCChHHHHHhhCCC---CHHHHHHHHHHHH
Q 017249 20 NQRKQALIEELSDKLI--NGDLETKIEAARDIRKVVKKSSL-KTRSEFAAAGVVQPLVLMLVSP---NLDAIESSLLALL 93 (375)
Q Consensus 20 ~~~~~~~l~~Lv~~L~--s~~~~~~~~a~~~l~~l~~~~~~-~~~~~~~~~g~v~~Lv~~L~~~---~~~~~~~a~~~L~ 93 (375)
.-.+.|.+..++..+. ..+...+.+-+.++..+.++.++ .-+..+.+.|.++.++..+-++ +.++.......|+
T Consensus 90 ~~~~~gLl~kIi~~l~~e~~~s~~RfwLa~cVESfLRg~t~~~~Q~fl~~~GLLe~lv~eil~~~~~~~~v~Q~~FDLLG 169 (303)
T PF12463_consen 90 CKEKKGLLSKIIHVLKKEPIDSSYRFWLARCVESFLRGATSYADQAFLAERGLLEHLVSEILSDGCMSQEVLQSNFDLLG 169 (303)
T ss_pred ccccccHHHHHHHHHHhCCCchhHHHHHHHHHHHHHcCCCcHHHHHHHHhcchHHHHHHHHhcCccchHHHHHHHHHHHH
Confidence 4456788999998886 34666788888999999988834 3556678889999999876544 3578889999999
Q ss_pred HhhccChhhHHHHH
Q 017249 94 NLAVRNERNKVKIA 107 (375)
Q Consensus 94 ~L~~~~~~~r~~i~ 107 (375)
.|.+.+...-..+-
T Consensus 170 ELiK~n~~~f~~l~ 183 (303)
T PF12463_consen 170 ELIKFNRDAFQRLN 183 (303)
T ss_pred HHHCCCHHHHHHHH
Confidence 99998766554443
No 317
>PF01365 RYDR_ITPR: RIH domain; InterPro: IPR000699 Ryanodine and Inositol 1,4,5-trisphosphate (IP3) receptors are intracellular Ca2+-release channels. They become activated upon binding of their respective ligands, Ca2+ and IP3, opening an intrgral Ca2+ channel. Ryanodine receptor activation is a key component of muscular contraction, their activation allowing release of Ca2+ from the sarcoplasmic reticulum. Mutations in the ryanodine receptor lead to malignant hyperthermia susceptibility the and central core disease of muscle.; GO: 0005262 calcium channel activity, 0070588 calcium ion transmembrane transport, 0016020 membrane; PDB: 1N4K_A 2XOA_A 3UJ0_B 3UJ4_A 3T8S_A.
Probab=56.42 E-value=60 Score=27.62 Aligned_cols=146 Identities=12% Similarity=0.104 Sum_probs=59.3
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhC-ChhhHHHHHhcCChHHHHHhhCCC---C---------------HHHH
Q 017249 25 ALIEELSDKLINGDLETKIEAARDIRKVVKKS-SLKTRSEFAAAGVVQPLVLMLVSP---N---------------LDAI 85 (375)
Q Consensus 25 ~~l~~Lv~~L~s~~~~~~~~a~~~l~~l~~~~-~~~~~~~~~~~g~v~~Lv~~L~~~---~---------------~~~~ 85 (375)
+.+..|+.++..+..+.. -+.....+. ....++.+...|+...++++|..+ . .++.
T Consensus 4 ~~l~~Li~f~~~~~~~~~-----~~~~~~~~~~~~~rQ~llrnl~i~~~v~~~L~~~~~~~~~~~~~~~~~~~~~~~~l~ 78 (207)
T PF01365_consen 4 KILRDLIKFCMGSEEEDQ-----HLLKQRNGQPNRERQKLLRNLGIHELVLDLLKNPFDQFQGDFKDLGDQKDSSFKELF 78 (207)
T ss_dssp HHHHHHHHHHTTTS--SS------SHHCCCCHHHHHHHHHHHHTTHHHHHHHHHHHHCTS---------STGGHCHHHHH
T ss_pred HHHHHHHhHhCCCCcccc-----hHHHHhcCCcchhhHHHHHHHHHHHHHHHHhhhhhhcccchhhhhcchhccHHHHHH
Confidence 456677777654433322 111111111 125666777889999988888531 1 3677
Q ss_pred HHHHHHHHHhhccChhhHHHHHHcCChHHHHHhhcCCChHHHHHHHHHHHHhhccCC-ChhHHHhcCChHHHHHHhccCC
Q 017249 86 ESSLLALLNLAVRNERNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAP-NKPAIAASGAAPLLVQILHSGS 164 (375)
Q Consensus 86 ~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~-~~~~i~~~~~l~~L~~lL~~~~ 164 (375)
..+.+.|..++.++.+++..+.+. ++.++..+.......-..+..++..+..+.. -...+. ...+..++.++....
T Consensus 79 ~~~~~lL~~f~~~n~~NQ~~l~~~--~~~l~~~~~~~~~~~~~~~~d~l~~i~~dN~~L~~~i~-e~~I~~~i~ll~~~g 155 (207)
T PF01365_consen 79 RLCYRLLRQFCRGNRENQKYLFKH--LDFLISIFMQLQIGYGLGALDVLTEIFRDNPELCESIS-EEHIEKFIELLRKHG 155 (207)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHH--HH-----HHCCCH-TTHHHHHHHHHHHTT-------------------------
T ss_pred HHHHHHHHHHHHhCHHHHHHHHHH--HhHHHHHHHHhhccCCchHHHHHHHHHHCcHHHHHHhh-HHHHHHHHHHHHHcC
Confidence 899999999999999999988874 3322333322111111244556666655433 233333 334888888887633
Q ss_pred HHHHHHHHHHHHHhcc
Q 017249 165 VQGRVDAVTALHYLST 180 (375)
Q Consensus 165 ~~~~~~a~~~L~~L~~ 180 (375)
.. ..-+..|..|+.
T Consensus 156 r~--~~~L~~L~~lc~ 169 (207)
T PF01365_consen 156 RQ--PRYLDFLSSLCV 169 (207)
T ss_dssp ----------------
T ss_pred CC--hHHHHHHhhhcc
Confidence 11 223444555554
No 318
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=55.50 E-value=2.1e+02 Score=27.94 Aligned_cols=278 Identities=15% Similarity=0.129 Sum_probs=131.9
Q ss_pred HHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHH----HhhCCC-CHHHHHHHHHHHHHhhccChhhHHHHHHcCChH
Q 017249 39 LETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLV----LMLVSP-NLDAIESSLLALLNLAVRNERNKVKIATAGAIP 113 (375)
Q Consensus 39 ~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv----~~L~~~-~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~ 113 (375)
...+..|+..|......- +- ..++.+. .++... ..+.|..++..|..+...... +.-....
T Consensus 4 l~~R~~a~~~l~~~i~~~-~~--------~~i~~iW~~~~DLi~~~~p~e~R~~~~~ll~~~i~~~~~-~~~~~R~---- 69 (464)
T PF11864_consen 4 LSERIKAAEELCESIQKY-PL--------SSIEEIWYAAKDLIDPNQPSEARRAALELLIACIKRQDS-SSGLMRA---- 69 (464)
T ss_pred HHHHHHHHHHHHHHHHhC-Cc--------hHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHcccc-ccHHHHH----
Confidence 345666666666655444 11 2233332 233333 467899999988888875332 1111111
Q ss_pred HHHHhhc-CCChHHHHHHHHHHHHhhccCCChhHHHhcCChHHHHHHhccC---------------------------CH
Q 017249 114 PLVELLK-FQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHSG---------------------------SV 165 (375)
Q Consensus 114 ~Lv~lL~-~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~l~~L~~lL~~~---------------------------~~ 165 (375)
.+...+. ...++.-..-+.+|..|+.+...-.. .+.+..+.|...|..- +.
T Consensus 70 ~fF~~I~~~~~~~d~~~~l~aL~~LT~~Grdi~~-~~~~i~~~L~~wl~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~ 148 (464)
T PF11864_consen 70 EFFRDISDPSNDDDFDLRLEALIALTDNGRDIDF-FEYEIGPFLLSWLEPSYQAARSARRKAKKSSSSKSKGLSNLDNEE 148 (464)
T ss_pred HHHHHHhcCCCchhHHHHHHHHHHHHcCCcCchh-cccchHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccchh
Confidence 1222222 23343344556778888776654422 3556666666655321 11
Q ss_pred HHHHHHHHHHHHhccCCCC-chhhhhcCCcHHHHHHhhhcccchHHHHHHHHHHHHhhCChhhhHHHhhccCcHHHHHHH
Q 017249 166 QGRVDAVTALHYLSTCKEN-SSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVET 244 (375)
Q Consensus 166 ~~~~~a~~~L~~L~~~~~~-~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~Lv~l 244 (375)
......+..+.|+...+.. ...-.-.+.+..++.+....+.. ...+.++.++-.+...... ..+.++.++..
T Consensus 149 ~~l~~ll~~l~nviKfn~~~l~e~~i~~lv~~i~~iC~~Ts~~-~di~~~L~vldaii~y~~i------P~~sl~~~i~v 221 (464)
T PF11864_consen 149 SNLSDLLQFLVNVIKFNFNYLDEDEISSLVDQICTICKSTSSE-DDIEACLSVLDAIITYGDI------PSESLSPCIEV 221 (464)
T ss_pred hhHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhccCcH-HHHHHHHHHHHHHHHcCcC------ChHHHHHHHHH
Confidence 1223333344444433211 11111123444555554433322 2224455555544321110 11122233333
Q ss_pred hc--cCChHHHHHHHHHHHHhcccCcHHHHHHHHHcCChHHHHHHhhh------CCHHHHHHHHHHHHHhhcCChh---h
Q 017249 245 VE--DGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVE------GTFEAQERARTLLDLLRDTPQE---K 313 (375)
Q Consensus 245 L~--~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~g~v~~L~~ll~~------~~~~~~~~A~~~L~~l~~~~~~---~ 313 (375)
|. .+.....+.+-.++.||+..... .-++..|..++.+ .+..+-.-|+..++.+-....+ .
T Consensus 222 LCsi~~~~~l~~~~w~~m~nL~~S~~g--------~~~i~~L~~iL~~~~~~~~~~~~~lRGAv~~l~~ll~~~~~~~~~ 293 (464)
T PF11864_consen 222 LCSIVNSVSLCKPSWRTMRNLLKSHLG--------HSAIRTLCDILRSPDPQNKRDINVLRGAVFFLRMLLWGSGEQGYP 293 (464)
T ss_pred HhhHhcccccchhHHHHHHHHHcCccH--------HHHHHHHHHHHcccCccccccHHHHhhHHHHHHHHHhccccCCcc
Confidence 32 12235666777788888765421 2245677777732 3456667888888887655522 1
Q ss_pred hhh---hhhHHHHHHHHhhcCCChHHHHHHHHHHHHHHH
Q 017249 314 RLS---SSVLEKIVYDIAARVDGADKAAETAKRLLQDMV 349 (375)
Q Consensus 314 ~~~---~g~~~~l~~~l~~~~~g~~~~~~~a~~~l~~l~ 349 (375)
.+. .-+++.+...+. .+. ++.--....++..++
T Consensus 294 ~l~~~~~~vl~sl~~al~--~~~-~~v~~eIl~~i~~ll 329 (464)
T PF11864_consen 294 SLPFSPSSVLPSLLNALK--SNS-PRVDYEILLLINRLL 329 (464)
T ss_pred eecccHHHHHHHHHHHHh--CCC-CeehHHHHHHHHHHH
Confidence 121 227778877775 222 333334444444444
No 319
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=54.27 E-value=1.8e+02 Score=26.86 Aligned_cols=213 Identities=15% Similarity=0.063 Sum_probs=99.5
Q ss_pred cCChHHHHHhhcCC-ChHHHHHHHHHHHHhhccCCChhHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCCCCchh
Q 017249 109 AGAIPPLVELLKFQ-NGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTCKENSSP 187 (375)
Q Consensus 109 ~g~i~~Lv~lL~~~-~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~ 187 (375)
..++..|..++... ++......+.++..-...- ..-.....++.+.+-+.+..+.+++.-+..+..+.....+...
T Consensus 21 ~~i~~~l~~~~~KE~nE~aL~~~l~al~~~~~~~---~~~~~~~~~~~~~kGl~~kk~~vR~~w~~~~~~~~~~~~~~~~ 97 (339)
T PF12074_consen 21 SKIVQGLSPLLSKESNEAALSALLSALFKHLFFL---SSELPKKVVDAFKKGLKDKKPPVRRAWLLCLGEALWESPNSDS 97 (339)
T ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHh---CcCCCHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHhhccCchH
Confidence 33455677776554 6766766666665532211 0001234455666666666666666666666555442112111
Q ss_pred h-hhcCCcHHHHHHhhhcccch----H--HHHHHHHHHHHhhC--Chhhh-----HHHhhccCcHHHHH---HHhcc-CC
Q 017249 188 I-LDATAVPPLINLLKDCKKYS----K--FAEKATALLEILSS--SEEGR-----IAITNSDGGILTLV---ETVED-GS 249 (375)
Q Consensus 188 i-~~~g~i~~Lv~ll~~~~~~~----~--~~~~a~~~L~~l~~--~~~~~-----~~~~~~~g~v~~Lv---~lL~~-~~ 249 (375)
. .-...++.|++.+.+....+ . ....+.-++. +.. ..... ...+ ..+-=+.++ .++.. .+
T Consensus 98 ~~~~~~~~~~L~~~~~~~~~~p~~~~~~~~~~~a~~~l~-~~~~~~~~~~~~~~~~~~l-~~~~kps~ll~~kvyskl~~ 175 (339)
T PF12074_consen 98 LKFAEPFLPKLLQSLKEASANPLQSAQNGELVGAYVLLA-LSSWKLDKIDSKNISFWSL-ALDPKPSFLLSEKVYSKLAS 175 (339)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCccccccHHHHHHHHH-hccccchhhhhhhhhhhhh-ccCCCcchhcCHHHHhccCC
Confidence 1 11347777777775421111 1 0111111111 111 00000 0000 000001110 12222 23
Q ss_pred hHHHHHHHHHHHHhcccCcHHHHHHHHHcCChHHHHHHhhhC--CHHHHHHHHHHHHHhhcCChhhhhhhhhHHHHHHHH
Q 017249 250 LVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEG--TFEAQERARTLLDLLRDTPQEKRLSSSVLEKIVYDI 327 (375)
Q Consensus 250 ~~~~~~a~~~L~~l~~~~~~~~~~~l~~~g~v~~L~~ll~~~--~~~~~~~A~~~L~~l~~~~~~~~~~~g~~~~l~~~l 327 (375)
+.-....+.++..+..+......... ....-..++.++-+. ++.+|+.|..+|..+....+.. +...++.++-..|
T Consensus 176 ~~d~~w~~~al~~~~~~~~~~~~~~~-~~~~~~a~i~ll~s~~~~~~vR~~A~~~l~~l~~~~~~~-l~~~li~~l~~~l 253 (339)
T PF12074_consen 176 EEDLCWLLRALEALLSDHPSELSSDK-SSAWAQAFIYLLCSSNVSWKVRRAALSALKKLYASNPEL-LSKSLISGLWKWL 253 (339)
T ss_pred HhHHHHHHHHHHHHHhcchhhhhhhH-HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhChHH-HHHHHHHHHHHHH
Confidence 33344555555555544322111111 223445667777666 8999999999999887766543 5666666665555
Q ss_pred h
Q 017249 328 A 328 (375)
Q Consensus 328 ~ 328 (375)
.
T Consensus 254 ~ 254 (339)
T PF12074_consen 254 S 254 (339)
T ss_pred H
Confidence 4
No 320
>KOG1848 consensus Uncharacterized conserved protein [Function unknown]
Probab=53.89 E-value=38 Score=37.01 Aligned_cols=164 Identities=15% Similarity=0.118 Sum_probs=78.6
Q ss_pred CCCCHHHHHHHHHHHHHhhccChhhHHHHHHcCChHHHHHhhcC----C---ChHHHHHHHHHHHHhhccCC-ChhHHHh
Q 017249 78 VSPNLDAIESSLLALLNLAVRNERNKVKIATAGAIPPLVELLKF----Q---NGTLRELAAAAILTLSAAAP-NKPAIAA 149 (375)
Q Consensus 78 ~~~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~----~---~~~~~~~a~~~L~~Ls~~~~-~~~~i~~ 149 (375)
..+..+++...+.+|.++-... -..++. | -+.+.+++++ . ...+...+..+|.-++.+-- .-+.-.-
T Consensus 852 s~~~~evr~~sl~~l~silet~---ge~ll~-~-w~sV~eml~s~~d~~~ekek~ivrlgf~~lrlIssDfLqSLp~sci 926 (1610)
T KOG1848|consen 852 SSRGVEVRISSLEALVSILETV---GEHLLH-G-WQSVFEMLRSATDFGSEKEKKIVRLGFSCLRLISSDFLQSLPTSCI 926 (1610)
T ss_pred cCccceeeHHHHHHHHHHHhcc---chhhcc-c-cHHHHHHHHHHhhccchhhhhHHHhhhhhhhhhhhcchhcCChHHH
Confidence 4456677777788887776421 222222 1 4444444432 2 23444556666666654421 1111122
Q ss_pred cCChHHHHHHhcc-CCHHHHHHHHHHHHHhccCCCC-chhhhhcCCcHHHHHHhhhcccchHHHHHHHHH--HHHhhCCh
Q 017249 150 SGAAPLLVQILHS-GSVQGRVDAVTALHYLSTCKEN-SSPILDATAVPPLINLLKDCKKYSKFAEKATAL--LEILSSSE 225 (375)
Q Consensus 150 ~~~l~~L~~lL~~-~~~~~~~~a~~~L~~L~~~~~~-~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~--L~~l~~~~ 225 (375)
.+.++.+....+. .|..+--.|...+|+++..-.+ +....+.+--...++.+.++.+...+...++|+ +.+|+..-
T Consensus 927 ~~lidtl~~fs~QktdlNISltAi~lfWtvsDfl~~km~S~sed~~~~~~~e~~~ss~~~~~~l~e~lwi~ll~~L~~~~ 1006 (1610)
T KOG1848|consen 927 LDLIDTLLVFSRQKTDLNISLTAIGLFWTVSDFLKNKMFSTSEDSCAYNSVEDLYSSMKSKEILPEVLWIMLLVHLADLC 1006 (1610)
T ss_pred HHHHHHHHHHHhhhccccccHHHHHHHHHHHHHHHhhhhccchhhhhhcchhhhcccccchhhhhhHHHHHHHHHHHHHh
Confidence 3555666555543 3566777888899988754222 112222222222333333322222333334443 23555432
Q ss_pred hhhHHHhhccCcHHHHHHHhcc
Q 017249 226 EGRIAITNSDGGILTLVETVED 247 (375)
Q Consensus 226 ~~~~~~~~~~g~v~~Lv~lL~~ 247 (375)
++-+.-+ ..|+++.+++.+.+
T Consensus 1007 ~dsr~eV-RngAvqtlfri~~S 1027 (1610)
T KOG1848|consen 1007 EDSRAEV-RNGAVQTLFRIFNS 1027 (1610)
T ss_pred ccchHHH-hhhHHHHHHHHHhh
Confidence 2222233 25777777777754
No 321
>PF07923 N1221: N1221-like protein; InterPro: IPR012486 The sequences featured in this family are similar to a hypothetical protein product of ORF N1221 in the CPT1-SPC98 intergenic region of the yeast genome (P53917 from SWISSPROT). This encodes an acidic polypeptide with several possible transmembrane regions [].
Probab=53.54 E-value=41 Score=30.55 Aligned_cols=59 Identities=22% Similarity=0.276 Sum_probs=47.1
Q ss_pred HhhHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCC-------------hhhHHHHHhcCChHHHHHhhCC
Q 017249 21 QRKQALIEELSDKLINGDLETKIEAARDIRKVVKKSS-------------LKTRSEFAAAGVVQPLVLMLVS 79 (375)
Q Consensus 21 ~~~~~~l~~Lv~~L~s~~~~~~~~a~~~l~~l~~~~~-------------~~~~~~~~~~g~v~~Lv~~L~~ 79 (375)
..+...+..++..|.+++...+..|+.+|.-++.+.. ..|...+.+.|+++.|+++|..
T Consensus 56 ~~~~~~i~~ll~~L~~~~~~~R~~al~~LlYi~~G~~~~~~s~~~ql~~i~~N~~lL~~~g~~~~l~~~L~~ 127 (293)
T PF07923_consen 56 DQRKDFIEKLLDQLESSDSEDRLEALRALLYIAQGTWGETASEEEQLQWIRRNVFLLYECGGFPALWELLKM 127 (293)
T ss_pred hhHHHHHHHHHHhccccchhhHHHHHHHHHHHHcCCccccCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 3467788999999999999999999999999987652 2344556778999999888854
No 322
>PF04064 DUF384: Domain of unknown function (DUF384); InterPro: IPR007206 This is a protein of unknown function. It is found C-terminal to another domain of unknown function (IPR007205 from INTERPRO).
Probab=52.54 E-value=53 Score=21.69 Aligned_cols=50 Identities=30% Similarity=0.398 Sum_probs=37.2
Q ss_pred HHHhcccCcHHHHHHHHHcCChHHHHHHhh-hCCHHHHHHHHHHHHHhhcCCh
Q 017249 260 LLSLCQSCRDKYRQLILKEGAIPGLLRLTV-EGTFEAQERARTLLDLLRDTPQ 311 (375)
Q Consensus 260 L~~l~~~~~~~~~~~l~~~g~v~~L~~ll~-~~~~~~~~~A~~~L~~l~~~~~ 311 (375)
|.-||... ..++.+.+.|+.+.|-.+-. ..++.+++..-.+...|-+..+
T Consensus 2 LllL~~T~--~GR~~lR~~~vY~IlRe~h~~E~d~~V~e~~erlV~iLirdE~ 52 (58)
T PF04064_consen 2 LLLLCATR--EGREYLREKGVYPILRELHKWEEDEEVQEACERLVQILIRDEP 52 (58)
T ss_pred HhHHhccH--HHHHHHHHcCchHHHHHHHhccCCHHHHHHHHHHHHHHhcCCC
Confidence 34455543 67888888888888877544 6789999999998888876653
No 323
>PF06012 DUF908: Domain of Unknown Function (DUF908); InterPro: IPR010309 This is a domain of unknown function found at the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately N-terminal to another domain of unknown function: IPR010314 from INTERPRO.
Probab=52.45 E-value=44 Score=30.89 Aligned_cols=77 Identities=23% Similarity=0.268 Sum_probs=49.5
Q ss_pred HHHHHHHHHHhccCCCCchhhhhcC--CcHHHHHHhhhccc-chHHHHHHHHHHHHhhCChhhhHHHhh------ccCcH
Q 017249 168 RVDAVTALHYLSTCKENSSPILDAT--AVPPLINLLKDCKK-YSKFAEKATALLEILSSSEEGRIAITN------SDGGI 238 (375)
Q Consensus 168 ~~~a~~~L~~L~~~~~~~~~i~~~g--~i~~Lv~ll~~~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~------~~g~v 238 (375)
+-.|+..+.++...+.....+...+ .+..|++++..+.. +..++..|+.+|..++........++. .+|.+
T Consensus 239 RllAi~~l~~~~~~~~~~~~~l~~dp~l~~eL~eLi~~~~~v~~~i~~~Al~~L~ai~~~~~~~~~V~~aLg~~v~HGiL 318 (329)
T PF06012_consen 239 RLLAIANLVYIHPESQFSSKLLEQDPELVNELVELISPEEKVPMDIQTAALRALEAISHKRPRCSDVLRALGANVSHGIL 318 (329)
T ss_pred HHHHHHHHHhhCCCHHHHHHHHhcChHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHhccccHHHHHHHhcCCCCcccH
Confidence 3344444444444445566666655 99999999986542 346888899999999886655555443 45666
Q ss_pred HHHHHH
Q 017249 239 LTLVET 244 (375)
Q Consensus 239 ~~Lv~l 244 (375)
..+++.
T Consensus 319 ~~llR~ 324 (329)
T PF06012_consen 319 PQLLRK 324 (329)
T ss_pred HHHHHH
Confidence 666543
No 324
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=51.36 E-value=27 Score=25.10 Aligned_cols=64 Identities=16% Similarity=0.154 Sum_probs=41.7
Q ss_pred HcCChHHHHHhhcC-CChHHHHHHHHHHHHhhccCCChhHHHhcCChHHHHHHhc----cCCHHHHHHHHHHH
Q 017249 108 TAGAIPPLVELLKF-QNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILH----SGSVQGRVDAVTAL 175 (375)
Q Consensus 108 ~~g~i~~Lv~lL~~-~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~l~~L~~lL~----~~~~~~~~~a~~~L 175 (375)
+...+.|+..++.+ .+.++|+..+.|+..+...... .+ .-|++.+..++. +++..+...|..++
T Consensus 15 Q~~fL~Pf~~i~~~~~~~~vre~il~ci~qil~~~~~--~i--~SGW~~if~il~~aa~~~~e~lv~~af~~~ 83 (86)
T PF09324_consen 15 QKDFLKPFEYIMSNNPSIDVRELILECILQILQSRGE--NI--KSGWKVIFSILRAAAKDNDESLVRLAFQIV 83 (86)
T ss_pred HHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhHH--HH--HhccHHHHHHHHHHHhCCCccHHHHHHHHH
Confidence 34456788888654 4889999999999998765331 12 233666666653 44566666666554
No 325
>KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=49.61 E-value=53 Score=31.96 Aligned_cols=69 Identities=10% Similarity=0.188 Sum_probs=56.2
Q ss_pred cHHHHHHHhccCChHHHHHHHHHHHHhcccCcHHHHHHHHHcCChHHHHHHhhh--CCHHHHHHHHHHHHH
Q 017249 237 GILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVE--GTFEAQERARTLLDL 305 (375)
Q Consensus 237 ~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~g~v~~L~~ll~~--~~~~~~~~A~~~L~~ 305 (375)
++..|.+.|.+.++.++..|+.+|-.+..+++......+.+.+++.-+|..... .+..+|+.+..+|..
T Consensus 39 AvralkKRi~~k~s~vq~lALtlLE~cvkNCG~~fh~~Va~k~fL~emVk~~k~~~~~~~Vr~kiL~LI~~ 109 (470)
T KOG1087|consen 39 AVRALKKRLNSKNSKVQLLALTLLETCVKNCGYSFHLQVASKEFLNEMVKRPKNKPRDLKVREKILELIDT 109 (470)
T ss_pred HHHHHHHHhccCCcHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhccccCCcchhHHHHHHHHHHH
Confidence 556667777777889999999999888888876667788889999999988774 478899999888763
No 326
>PF04869 Uso1_p115_head: Uso1 / p115 like vesicle tethering protein, head region; InterPro: IPR006953 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associated protein (TAP) or Vesicle docking protein, this myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the head region. The head region is highly conserved, but its function is unknown. It does not seem to be essential for vesicle tethering []. The N-terminal part of the head region contains context-detected Armadillo/beta-catenin-like repeats.; GO: 0006886 intracellular protein transport, 0048280 vesicle fusion with Golgi apparatus, 0000139 Golgi membrane, 0005737 cytoplasm; PDB: 2W3C_A 3GRL_A 3GQ2_A.
Probab=47.96 E-value=70 Score=29.38 Aligned_cols=101 Identities=13% Similarity=0.115 Sum_probs=64.0
Q ss_pred CCCHHHHHHHHHHHHHHHhhCChhhHHHHHhc--C----------ChHHHHHhhCC-----CCHHHHHHHHHHHHHhhcc
Q 017249 36 NGDLETKIEAARDIRKVVKKSSLKTRSEFAAA--G----------VVQPLVLMLVS-----PNLDAIESSLLALLNLAVR 98 (375)
Q Consensus 36 s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~--g----------~v~~Lv~~L~~-----~~~~~~~~a~~~L~~L~~~ 98 (375)
+.|+-...-|+.++..+..++ ++.|+.+.+- | .++.+..+|.. .++.++..=+..|.....+
T Consensus 108 ~~dpy~~wfAa~il~hll~dn-~~~Ke~al~V~~~~~~~ge~~vtliq~v~~lL~~~l~~~~d~ri~igyL~LL~~WL~e 186 (312)
T PF04869_consen 108 SLDPYRCWFAAVILMHLLRDN-PEAKEQALRVTEGDESSGEEPVTLIQTVSELLIASLRRNSDPRIQIGYLMLLIVWLFE 186 (312)
T ss_dssp SS-HHHHHHHHHHHHHHHTT--HHHHHHHTT--EE--STTS--EEHHHHHHHHTTT----T--HHHHHHHHHHHHHHHTT
T ss_pred cCCHHHHHHHHHHHHHHHhcC-HHHHHHHHcccCCCCCCCCCcccHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHHHhC
Confidence 456666777999999999999 8888876432 1 24456666543 3677777777888887788
Q ss_pred ChhhHHHHHHcC-ChHHHHHhhcCC---ChHHHHHHHHHHHHh
Q 017249 99 NERNKVKIATAG-AIPPLVELLKFQ---NGTLRELAAAAILTL 137 (375)
Q Consensus 99 ~~~~r~~i~~~g-~i~~Lv~lL~~~---~~~~~~~a~~~L~~L 137 (375)
++..-..+...+ .++.|++..... +.-++--++-.|.-+
T Consensus 187 ~p~AV~~FL~~~s~l~~Li~~~~~~~~~~~~VqGL~A~LLGic 229 (312)
T PF04869_consen 187 CPDAVNDFLSEGSNLQSLIEFSNQSSSEDVLVQGLCAFLLGIC 229 (312)
T ss_dssp -HHHHHHHHCSTTHHHHHHHHHS--TCCCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHcCcchHHHHHHHhhcCCCCcchHHHHHHHHHHHH
Confidence 888888888764 689999975432 344444444444433
No 327
>KOG1791 consensus Uncharacterized conserved protein [Function unknown]
Probab=47.54 E-value=4.7e+02 Score=29.68 Aligned_cols=199 Identities=12% Similarity=-0.004 Sum_probs=110.6
Q ss_pred HHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhccChhhH-HHHHHcCChHHHHHhhcCC----ChHHHHHH---HHHHH
Q 017249 64 FAAAGVVQPLVLMLVSPNLDAIESSLLALLNLAVRNERNK-VKIATAGAIPPLVELLKFQ----NGTLRELA---AAAIL 135 (375)
Q Consensus 64 ~~~~g~v~~Lv~~L~~~~~~~~~~a~~~L~~L~~~~~~~r-~~i~~~g~i~~Lv~lL~~~----~~~~~~~a---~~~L~ 135 (375)
+++.|..-.+...+++.++.++..|.+++...-.+ -+++ +...+.-.+..+..+.+++ ++++-... ..-..
T Consensus 1435 fvs~~lLa~~F~~lSS~D~~mr~la~~~lqi~~dH-Le~l~ek~~a~~~ll~L~~l~qng~~e~~~Rl~si~alF~A~~~ 1513 (1758)
T KOG1791|consen 1435 FVSRGLLALLFKGLSSDDPSMRKLAYWVLQIFLDH-LENLLEKKQAQFNLLYLSCLAQNGSRESDPRLISICALFIAFFS 1513 (1758)
T ss_pred hhhcccHHHHhhhhccCCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHccCcCCCcchhhHHHHHHHHHH
Confidence 45667777777778888888888777766654442 3332 3333333344555554433 22221111 11112
Q ss_pred HhhccCC--Ch---------hHHHhcCChHHHHHHhccCCHH---HHHHHHHHHHHhccCCCCchhhhhcCCcHHHHHHh
Q 017249 136 TLSAAAP--NK---------PAIAASGAAPLLVQILHSGSVQ---GRVDAVTALHYLSTCKENSSPILDATAVPPLINLL 201 (375)
Q Consensus 136 ~Ls~~~~--~~---------~~i~~~~~l~~L~~lL~~~~~~---~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~ll 201 (375)
+++..+. .. ..+.+..++|.+-+.+.+..++ .+......+...-..+.........+....++.+.
T Consensus 1514 ~ill~Ps~~ly~~In~~L~~s~~vdlq~iP~F~~ffySs~~e~~t~R~Wvl~LV~~glks~~D~ql~~~~~~~~~~lsf~ 1593 (1758)
T KOG1791|consen 1514 DILLVPSEGLYFPINGLLLSSKIVDLQGIPIFHRFFYSSVFEHHTEREWVLELVSKGLKSCPDYQLLQIRNIFETLLSFY 1593 (1758)
T ss_pred HHHcCCccccchhHHHHHHhhhhcccCCCccHHHHHHhccccccchhhhhHHHHHHHhcCchhhhHHhhcCcceEeehhh
Confidence 2333331 11 1234566788888888776433 34444555554444455555556677888888877
Q ss_pred hhcccchHHHHHHHHHHHHhhCChhhhHHHhhccCcHHHHHHHhccCC--hHHHHH-HHHHHHHh
Q 017249 202 KDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGS--LVSTQH-AVGALLSL 263 (375)
Q Consensus 202 ~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~--~~~~~~-a~~~L~~l 263 (375)
.+.-.+...+.-.+.+|++-...|..-..++...|...-+.+++.++. +..... -..++.++
T Consensus 1594 sS~l~~~~S~~LIL~~L~~~Vk~p~~a~~mle~~Gl~sWi~niI~s~~~k~~~~~~l~~~v~~~l 1658 (1758)
T KOG1791|consen 1594 SSPLASEESKRLILATLQKGVKFPFYAYEMLEVPGLFSWILNIIPSSFLKPVLLKALVISVLKVL 1658 (1758)
T ss_pred cchhHHHHHHHHHHHHHHhcCCCcHHHHHHHhcccHHHHHHHhccccccchHHHhhhHHHHHHHH
Confidence 765333333334566666666777777777767788888999997643 334444 33444444
No 328
>PLN03205 ATR interacting protein; Provisional
Probab=47.50 E-value=2.6e+02 Score=26.63 Aligned_cols=155 Identities=14% Similarity=0.093 Sum_probs=84.2
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhc-C-ChHHHHHhh-----CCCCHHHHHHHHHHHHHhhcc
Q 017249 26 LIEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAA-G-VVQPLVLML-----VSPNLDAIESSLLALLNLAVR 98 (375)
Q Consensus 26 ~l~~Lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~-g-~v~~Lv~~L-----~~~~~~~~~~a~~~L~~L~~~ 98 (375)
.++.|+.+..-++......+++.|..+.++- -.++..|-.. + -.-.|.+++ .+....++..|+.++.-+...
T Consensus 324 LlEaLLdLC~v~n~a~V~RsLRvLh~vLqHl-~~~~~~~~~~~~~NWvsLfElm~QiAv~~TEE~VrLEAvSIMnVIlms 402 (652)
T PLN03205 324 LVEPLLDLCKAETAVLVHRSLRVLHVLLEHI-CGDEKRFEASWDANWHSLFELMNQIASIRTEEDVKLEALSIMNIIVMS 402 (652)
T ss_pred HHHHHHHHHhcCchhhhHHHHHHHHHHHHHH-hCCcccccccccccHHHHHHHHHHHHhccchhheeeehhhhhHHhhhc
Confidence 4455555555566666666666666555443 2223332211 1 122333333 233456777777766665533
Q ss_pred --ChhhHHHHHHcCChHHHHHhhcCC-ChHHHHHHHHHHHHhhccCC----------ChhHH----------Hh----cC
Q 017249 99 --NERNKVKIATAGAIPPLVELLKFQ-NGTLRELAAAAILTLSAAAP----------NKPAI----------AA----SG 151 (375)
Q Consensus 99 --~~~~r~~i~~~g~i~~Lv~lL~~~-~~~~~~~a~~~L~~Ls~~~~----------~~~~i----------~~----~~ 151 (375)
-...|..+....+++.+-++|+.. --.++..++..|.-|...+. .+... .. ..
T Consensus 403 sna~~eREkFG~~~VfESiaQLLkkEaGl~VqKealhLLfLLLNCpklL~iFcSg~~e~~~ad~eNd~~~n~st~k~fSs 482 (652)
T PLN03205 403 TDAYTARESFVSKEVFESISLLLRKEGGLHVRKEAIHLFYLLLNCPKLYDRFDSLHEEKNSSDTENDSEGNFFALEAFGK 482 (652)
T ss_pred cchhHHHHHhcchHHHHHHHHHHHHhccchhhHHHHHHHHHHHcCcHHHHHHhcCCccccccccccccccccccHHHHHH
Confidence 233567777778888999999765 45677777776644331111 00000 00 11
Q ss_pred ChHHHHHHhccC-----CHHHHHHHHHHHHHhccC
Q 017249 152 AAPLLVQILHSG-----SVQGRVDAVTALHYLSTC 181 (375)
Q Consensus 152 ~l~~L~~lL~~~-----~~~~~~~a~~~L~~L~~~ 181 (375)
.+.-|.+++.++ +.+....+...|..++..
T Consensus 483 IlegLAeCiac~~~s~~dIeLck~aiimLAflASS 517 (652)
T PLN03205 483 IFEGLADCLTSPRKTSEDLELCRNVIMILALAASS 517 (652)
T ss_pred HHHHHHHHHcCCCCChhhhHHHHHHHHHHHHHHhc
Confidence 344555565443 456777888888888754
No 329
>PF14663 RasGEF_N_2: Rapamycin-insensitive companion of mTOR RasGEF_N domain
Probab=47.29 E-value=38 Score=25.87 Aligned_cols=39 Identities=15% Similarity=0.170 Sum_probs=31.9
Q ss_pred ChHHHHHhhCCCCHHHHHHHHHHHHHhhccChhhHHHHHH
Q 017249 69 VVQPLVLMLVSPNLDAIESSLLALLNLAVRNERNKVKIAT 108 (375)
Q Consensus 69 ~v~~Lv~~L~~~~~~~~~~a~~~L~~L~~~~~~~r~~i~~ 108 (375)
+++.|+.-|.++++++...|+..|...+.+. .+-..++.
T Consensus 9 ~i~lLv~QL~D~~~~V~~~A~~iL~e~c~~~-~~le~~v~ 47 (115)
T PF14663_consen 9 GIELLVTQLYDPSPEVVAAALEILEEACEDK-EYLEYLVS 47 (115)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhch-hhHHHHHH
Confidence 4889999999999999999999999999854 44444444
No 330
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=46.79 E-value=78 Score=24.73 Aligned_cols=48 Identities=21% Similarity=0.099 Sum_probs=23.6
Q ss_pred hHHHHHHHHHHHHhhccCCChhHHHhcCChHHHHHHhccCCHHHHHHHHHH
Q 017249 124 GTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHSGSVQGRVDAVTA 174 (375)
Q Consensus 124 ~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~ 174 (375)
.++...++.++..... .-....+.....++.+.++|.+++ .+..|+.+
T Consensus 100 ~~~~~~~L~~l~s~i~-~~~~~~i~~~~~l~~~~~~l~~~~--~~~~A~~c 147 (148)
T PF08389_consen 100 EELVKAALKCLKSWIS-WIPIELIINSNLLNLIFQLLQSPE--LREAAAEC 147 (148)
T ss_dssp HHHHHHHHHHHHHHTT-TS-HHHHHSSSHHHHHHHHTTSCC--CHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH-hCCHHHhccHHHHHHHHHHcCCHH--HHHHHHHh
Confidence 4555566666665544 222333444456666666663333 24444444
No 331
>PF07923 N1221: N1221-like protein; InterPro: IPR012486 The sequences featured in this family are similar to a hypothetical protein product of ORF N1221 in the CPT1-SPC98 intergenic region of the yeast genome (P53917 from SWISSPROT). This encodes an acidic polypeptide with several possible transmembrane regions [].
Probab=46.33 E-value=34 Score=31.10 Aligned_cols=54 Identities=31% Similarity=0.346 Sum_probs=42.9
Q ss_pred cCChHHHHHhhCCCCHHHHHHHHHHHHHhhccCh--------------hhHHHHHHcCChHHHHHhhc
Q 017249 67 AGVVQPLVLMLVSPNLDAIESSLLALLNLAVRNE--------------RNKVKIATAGAIPPLVELLK 120 (375)
Q Consensus 67 ~g~v~~Lv~~L~~~~~~~~~~a~~~L~~L~~~~~--------------~~r~~i~~~g~i~~Lv~lL~ 120 (375)
...+..+++.|.+.+...+..|+++|..++.+.- .|...+.+.|+++.|+.+|.
T Consensus 59 ~~~i~~ll~~L~~~~~~~R~~al~~LlYi~~G~~~~~~s~~~ql~~i~~N~~lL~~~g~~~~l~~~L~ 126 (293)
T PF07923_consen 59 KDFIEKLLDQLESSDSEDRLEALRALLYIAQGTWGETASEEEQLQWIRRNVFLLYECGGFPALWELLK 126 (293)
T ss_pred HHHHHHHHHhccccchhhHHHHHHHHHHHHcCCccccCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 3568889999999999999999999999997632 23445677888888888874
No 332
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=45.88 E-value=76 Score=34.97 Aligned_cols=145 Identities=12% Similarity=0.112 Sum_probs=83.0
Q ss_pred HhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhc--CChHHHHHhhCCCCHHHHHHHHHHHHHhhccChh
Q 017249 24 QALIEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAA--GVVQPLVLMLVSPNLDAIESSLLALLNLAVRNER 101 (375)
Q Consensus 24 ~~~l~~Lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~--g~v~~Lv~~L~~~~~~~~~~a~~~L~~L~~~~~~ 101 (375)
.+.+|.|-..|.+++.+.+..|+..++.+.... ...- .+. ......+..+.+.+.++|..++...-++-..++.
T Consensus 258 ~~vip~l~~eL~se~~~~Rl~a~~lvg~~~~~~--~~~l--~~~~~~~~~~fl~r~~D~~~~vR~~~v~~~~~~l~~~~~ 333 (1266)
T KOG1525|consen 258 LAVIPQLEFELLSEQEEVRLKAVKLVGRMFSDK--DSQL--SETYDDLWSAFLGRFNDISVEVRMECVESIKQCLLNNPS 333 (1266)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHHHhcc--hhhh--cccchHHHHHHHHHhccCChhhhhhHHHHhHHHHhcCch
Confidence 457888888999999999999999999998777 2221 121 3455666777778888888888777665543332
Q ss_pred hHHHHHHcCChHHHHHhhcCCChHHHHHHHHHHHHhhccCCChhHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhc
Q 017249 102 NKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLS 179 (375)
Q Consensus 102 ~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~~L~ 179 (375)
.-.... ....+- ..+.++.++.....++..+ .-....-.+... .+..+.+.+.+....|+..|...|..+-
T Consensus 334 ~~~~~~---~~~~l~--~~~~D~~~rir~~v~i~~~-~v~~~~l~~~~~-ll~~~~eR~rDKk~~VR~~Am~~LaqlY 404 (1266)
T KOG1525|consen 334 IAKAST---ILLALR--ERDLDEDVRVRTQVVIVAC-DVMKFKLVYIPL-LLKLVAERLRDKKIKVRKQAMNGLAQLY 404 (1266)
T ss_pred hhhHHH---HHHHHH--hhcCChhhhheeeEEEEEe-ehhHhhhhhhHH-HHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 211111 111111 1223444432221111111 101111112223 5666677777778888888888776554
No 333
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=45.87 E-value=4.4e+02 Score=29.28 Aligned_cols=237 Identities=16% Similarity=0.087 Sum_probs=117.8
Q ss_pred HhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHh--------hCC-CCHHHHHHHHHHHHH
Q 017249 24 QALIEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLM--------LVS-PNLDAIESSLLALLN 94 (375)
Q Consensus 24 ~~~l~~Lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~--------L~~-~~~~~~~~a~~~L~~ 94 (375)
...+..|+..+-++.++.+.-++..+..+....-...-....+.-.+..+.-+ ... --..+++.++++|..
T Consensus 76 ~s~~e~L~~~~~~~~we~rhg~~i~lrei~~~h~~~~~~~~led~~~rll~v~~Ldrf~dfisd~vvapVre~caq~L~~ 155 (1549)
T KOG0392|consen 76 LSFLEELVNDLFEPQWEIRHGAAIALREILKTHGDSLSYELLEDLLIRLLCVLALDRFGDFISDNVVAPVREACAQALGA 155 (1549)
T ss_pred HHHHHHHHHHhcCchhhhhcCcchhhhhHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHH
Confidence 45678888888899999998888888888754411111111221222222111 111 124678888888888
Q ss_pred hhccChhhHHHHHHcCChHHHHHhhcCCChHHHHHHHHHHHH-hhccCCChhHHHhcCChHHHHHHhccCCHHHHHHHHH
Q 017249 95 LAVRNERNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILT-LSAAAPNKPAIAASGAAPLLVQILHSGSVQGRVDAVT 173 (375)
Q Consensus 95 L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~-Ls~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~ 173 (375)
+...-. -..+.+ .+..+.+++..+.-+++...+..+.. ++...+. -...-..+++..+.-|.+.+..++.-|+.
T Consensus 156 ~l~~~~--~s~~~~--~~~il~q~~~q~~w~ir~Ggll~iky~~air~d~-l~~~~~~vl~~~i~~L~ds~ddv~~~aa~ 230 (1549)
T KOG0392|consen 156 YLKHMD--ESLIKE--TLDILLQMLRQPNWEIRHGGLLGIKYNVAIRQDL-LFQLLNLVLDFVIEGLEDSDDDVRSVAAQ 230 (1549)
T ss_pred HHHhhh--hHhhHH--HHHHHHHHHcCcchhheechHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhhhhcchHHHHHHHH
Confidence 775321 111111 24455555555433333222222211 1110000 00111245666677778888888888887
Q ss_pred HHHHhccCC--CCchhhhhcCCcHHHHHHhhhcccchHHHHHHHHHHHHhhCChhh---hHHHhhccCcHHHHHHHhccC
Q 017249 174 ALHYLSTCK--ENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEG---RIAITNSDGGILTLVETVEDG 248 (375)
Q Consensus 174 ~L~~L~~~~--~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~~~~~---~~~~~~~~g~v~~Lv~lL~~~ 248 (375)
.+.-.+..- .....+. ..+..+...+..-.+-..-...-...+..++...+. -.+.-.+.|.++.+..++++.
T Consensus 231 ~l~~~~s~~v~l~~~~i~--~lv~~l~~~l~~lddl~~s~~si~~ll~~l~~~~evl~l~~~~n~~~~Lvp~~~p~l~~~ 308 (1549)
T KOG0392|consen 231 FLVPAPSIQVKLMVQKIA--KLVHTLWSFLLELDDLSSSTASIMHLLDELCIENEVLDLFEQQNLEVGLVPRLWPFLRHT 308 (1549)
T ss_pred HhhhhhHHHHhhhHhHHH--HHHHHHHHHHHHhhhcchhhHHHHHHHHHHhhhHHHHHHHHHhhhhhccchhhHHHHHHH
Confidence 776554321 1111111 122233333222110000001112223344443321 111112358999999999887
Q ss_pred ChHHHHHHHHHHHHhcccC
Q 017249 249 SLVSTQHAVGALLSLCQSC 267 (375)
Q Consensus 249 ~~~~~~~a~~~L~~l~~~~ 267 (375)
=..++..++..+..+....
T Consensus 309 i~sv~~a~l~~l~~lle~~ 327 (1549)
T KOG0392|consen 309 ISSVRRAALETLAMLLEAD 327 (1549)
T ss_pred HHHHHHHHHHHHHHHHhcC
Confidence 7778889999998887754
No 334
>PF11791 Aconitase_B_N: Aconitate B N-terminal domain; InterPro: IPR015933 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. This entry represents the N-terminal HEAT-like domain, which is present in bacterial aconitase (AcnB), but not in AcnA or eukaryotic cAcn/IRP2 or mAcn. This domain is multi-helical, forming two curved layers in a right-handed alpha-alpha superhelix. HEAT-like domains are usually implicated in protein-protein interactions. The HEAT-like domain and the 'swivel' domain that follows it were shown to be sufficient for dimerisation and for AcnB binding to mRNA. An iron-mediated dimerisation mechanism may be responsible for switching AcnB between its catalytic and regulatory roles, as dimerisation requires iron while mRNA binding is inhibited by iron. More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0003994 aconitate hydratase activity, 0006099 tricarboxylic acid cycle; PDB: 1L5J_B.
Probab=45.73 E-value=47 Score=26.73 Aligned_cols=27 Identities=22% Similarity=0.148 Sum_probs=15.1
Q ss_pred ChHHHHHHhhhCCHHHHHHHHHHHHHh
Q 017249 280 AIPGLLRLTVEGTFEAQERARTLLDLL 306 (375)
Q Consensus 280 ~v~~L~~ll~~~~~~~~~~A~~~L~~l 306 (375)
-|.+|+.++.+.++.+.+.|+.+|.+.
T Consensus 95 NV~~LI~~L~~~d~~lA~~Aa~aLk~T 121 (154)
T PF11791_consen 95 NVQPLIDLLKSDDEELAEEAAEALKNT 121 (154)
T ss_dssp THHHHHHGG--G-TTTHHHHHHHHHT-
T ss_pred cHHHHHHHHcCCcHHHHHHHHHHHHhh
Confidence 356677777666666666666666643
No 335
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=45.00 E-value=2.5e+02 Score=30.16 Aligned_cols=175 Identities=15% Similarity=0.136 Sum_probs=98.8
Q ss_pred HHHHHHHHHHHHhccCCCCchhhhhcCCcHHHHHHhhhcccchHHHHHHHHHHHHhhCChhhhHHHhhccCcHHHHHHHh
Q 017249 166 QGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETV 245 (375)
Q Consensus 166 ~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~Lv~lL 245 (375)
.++..+.-+|.++|-..+. .....+|.|++-|..+. ...++-+..-+++-+|. ..+.++ ...+|.+...|
T Consensus 946 ~vra~~vvTlakmcLah~~----LaKr~~P~lvkeLe~~~-~~aiRnNiV~am~D~C~---~YTam~--d~YiP~I~~~L 1015 (1529)
T KOG0413|consen 946 KVRAVGVVTLAKMCLAHDR----LAKRLMPMLVKELEYNT-AHAIRNNIVLAMGDICS---SYTAMT--DRYIPMIAASL 1015 (1529)
T ss_pred HHHHHHHHHHHHHHhhhhH----HHHHHHHHHHHHHHhhh-HHHHhcceeeeehhhHH---HHHHHH--HHhhHHHHHHh
Confidence 4566667777777743321 11236777777776543 11233222222222332 223344 47899999999
Q ss_pred ccCChHHHHHHHHHHHHhcccCcHHHHHHHHH-cC-ChHHHHHHhhhCCHHHHHHHHHHHHHhhcCChhhhhhhhhHHHH
Q 017249 246 EDGSLVSTQHAVGALLSLCQSCRDKYRQLILK-EG-AIPGLLRLTVEGTFEAQERARTLLDLLRDTPQEKRLSSSVLEKI 323 (375)
Q Consensus 246 ~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~-~g-~v~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~~~~~~~g~~~~l 323 (375)
.++++-+|..++..|.+|...+ +++ .| ..-..+-.+-+.++.++.-|-.++..+-.....-++-..+++.+
T Consensus 1016 ~Dp~~iVRrqt~ilL~rLLq~~-------~vKw~G~Lf~Rf~l~l~D~~edIr~~a~f~~~~vL~~~~P~~f~~~FVe~i 1088 (1529)
T KOG0413|consen 1016 CDPSVIVRRQTIILLARLLQFG-------IVKWNGELFIRFMLALLDANEDIRNDAKFYISEVLQSEEPNFFPLNFVEYI 1088 (1529)
T ss_pred cCchHHHHHHHHHHHHHHHhhh-------hhhcchhhHHHHHHHHcccCHHHHHHHHHHHHHHHhhcCccchHHHHHHHH
Confidence 9999999999999999987543 333 33 22233333345788999999888887765543333334444444
Q ss_pred HHHHh--------------------hcCCChHHHHHHHHHHHHHHHHHHHHHhH
Q 017249 324 VYDIA--------------------ARVDGADKAAETAKRLLQDMVQRSMELSM 357 (375)
Q Consensus 324 ~~~l~--------------------~~~~g~~~~~~~a~~~l~~l~~~s~~~~~ 357 (375)
+.+=. +-..|+++++.+-.++..-|.++-.+..+
T Consensus 1089 ~~ln~~~~h~g~~n~~qs~r~~~~fSi~G~d~~aR~~Rm~IY~fLL~~~~de~r 1142 (1529)
T KOG0413|consen 1089 IALNQARRHVGVGNHDQSDRGQVDFSIGGGDPLARPSRMAIYTFLLDSLDDESR 1142 (1529)
T ss_pred HHHHHHHHhhCCCCCcccchhceeEeecCCCcccchhhhhHHHHHHHhcChHHH
Confidence 32111 00234577775555555555554444433
No 336
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=44.99 E-value=3.9e+02 Score=28.05 Aligned_cols=32 Identities=25% Similarity=0.356 Sum_probs=25.0
Q ss_pred ChHHHHHhhcCCChHHHHHHHHHHHHhhccCC
Q 017249 111 AIPPLVELLKFQNGTLRELAAAAILTLSAAAP 142 (375)
Q Consensus 111 ~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~ 142 (375)
.+|.++..|++++..+...|+.++-.+-.-.+
T Consensus 499 ~~p~li~~L~a~s~vvhsYAA~aiEkil~vre 530 (960)
T KOG1992|consen 499 LLPRLIRFLEAESRVVHSYAAIAIEKLLTVRE 530 (960)
T ss_pred HHHHHHHhccCcchHHHHHHHHHHHhcccccc
Confidence 47788888888888899999998877655443
No 337
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=43.99 E-value=1.2e+02 Score=21.75 Aligned_cols=66 Identities=6% Similarity=0.083 Sum_probs=46.1
Q ss_pred hhHhHHHHHHHHhc-CCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhh----CCCCHHHHHHHHHHHH
Q 017249 22 RKQALIEELSDKLI-NGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLML----VSPNLDAIESSLLALL 93 (375)
Q Consensus 22 ~~~~~l~~Lv~~L~-s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L----~~~~~~~~~~a~~~L~ 93 (375)
...+.+.++...+. ..+.++|...+.++.++.... . + -...| .+.+...+ .+++..+...|..++.
T Consensus 14 fQ~~fL~Pf~~i~~~~~~~~vre~il~ci~qil~~~-~---~-~i~SG-W~~if~il~~aa~~~~e~lv~~af~~~~ 84 (86)
T PF09324_consen 14 FQKDFLKPFEYIMSNNPSIDVRELILECILQILQSR-G---E-NIKSG-WKVIFSILRAAAKDNDESLVRLAFQIVQ 84 (86)
T ss_pred HHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHh-H---H-HHHhc-cHHHHHHHHHHHhCCCccHHHHHHHHHh
Confidence 45677888888765 678899999999999998766 2 1 12344 66666655 3456777777777654
No 338
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=43.94 E-value=3.4e+02 Score=26.98 Aligned_cols=102 Identities=13% Similarity=0.026 Sum_probs=60.9
Q ss_pred CCHHHHHHHHHHHHHhccCCCCchhhhhcCCcHHHHHHhhhcc--------cchHHHHHHHHHHHHhhCChhhhHHHhhc
Q 017249 163 GSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDCK--------KYSKFAEKATALLEILSSSEEGRIAITNS 234 (375)
Q Consensus 163 ~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~~--------~~~~~~~~a~~~L~~l~~~~~~~~~~~~~ 234 (375)
.+..........++.|..++...-.-.-...+|.++..+-+.+ .+-.++.-|...+..+|..-...-.-+ .
T Consensus 259 ~nL~lL~~lm~m~rSLl~Np~i~lepYlh~L~PSvlTCvVsk~l~~~p~~dnhwaLRDfAA~ll~~i~k~f~~~y~~L-~ 337 (576)
T KOG2549|consen 259 NNLELLIYLMRMVRSLLDNPNIFLEPYLHQLVPSVLTCVVSKNLCLRPELDNHWALRDFAARLLAQICKNFSTLYNNL-Q 337 (576)
T ss_pred ccHHHHHHHHHHHHHHhcCCccchhhHHHHHhhHHHHhhhhhhccCCccccchHHHHHHHHHHHHHHHHhhhhHHHHH-H
Confidence 3566777888888888888765544444456777776554321 122477788888888876543332223 2
Q ss_pred cCcHHHHHHHhccC-C-hHHHHHHHHHHHHhcc
Q 017249 235 DGGILTLVETVEDG-S-LVSTQHAVGALLSLCQ 265 (375)
Q Consensus 235 ~g~v~~Lv~lL~~~-~-~~~~~~a~~~L~~l~~ 265 (375)
......+...+.+. . ....--++..|..|..
T Consensus 338 ~Rit~tl~k~l~D~~~~~st~YGai~gL~~lg~ 370 (576)
T KOG2549|consen 338 PRITRTLSKALLDNKKPLSTHYGAIAGLSELGH 370 (576)
T ss_pred HHHHHHHHHHhcCCCCCchhhhhHHHHHHHhhh
Confidence 45666666666553 2 3444556666665543
No 339
>KOG2153 consensus Protein involved in the nuclear export of pre-ribosomes [Translation, ribosomal structure and biogenesis; Intracellular trafficking, secretion, and vesicular transport]
Probab=41.84 E-value=3.9e+02 Score=27.13 Aligned_cols=53 Identities=13% Similarity=0.152 Sum_probs=35.2
Q ss_pred HHHHHHHHhhccCCChhHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCCC
Q 017249 129 LAAAAILTLSAAAPNKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTCKE 183 (375)
Q Consensus 129 ~a~~~L~~Ls~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~~L~~~~~ 183 (375)
.|.+|...|....+... .....+..++.++.++...+...++.++.++..++.
T Consensus 304 vav~c~~~Ll~a~pHFN--~~~kiv~l~vr~in~~~~~~s~~~i~t~k~lf~~D~ 356 (704)
T KOG2153|consen 304 VAVQCACELLEAVPHFN--LRQKIVKLVVRLINDPGRPVSSGCIQTIKTLFENDN 356 (704)
T ss_pred HHHHHHHHHHHhhhhcc--HHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhcCCC
Confidence 45556666544322111 134566778888888878889999999999987754
No 340
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=41.57 E-value=3.5e+02 Score=27.94 Aligned_cols=116 Identities=18% Similarity=0.106 Sum_probs=72.9
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCCh-----hhHHHHHhcCC---hHHHH-----------HhhCC--CCHH
Q 017249 25 ALIEELSDKLINGDLETKIEAARDIRKVVKKSSL-----KTRSEFAAAGV---VQPLV-----------LMLVS--PNLD 83 (375)
Q Consensus 25 ~~l~~Lv~~L~s~~~~~~~~a~~~l~~l~~~~~~-----~~~~~~~~~g~---v~~Lv-----------~~L~~--~~~~ 83 (375)
..|..|+.+|.|.+..+...+-..+..+....-+ ...+++.+.|- +..|+ ..|.. ..+.
T Consensus 4 ~~~~~l~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~y~~~t~s~~~~~il~~~~~P~~K~~~~~l~~~~~~~~ 83 (668)
T PF04388_consen 4 ASITELLSLLESNDLSVLEEIKALLQELLNSDREPWLVNGLVDYYLSTNSQRALEILVGVQEPHDKHLFDKLNDYFVKPS 83 (668)
T ss_pred ccHHHHHHHhcCCchhhHHHHHHHHHHHhhccchHHHHHHHHHHHhhcCcHHHHHHHHhcCCccHHHHHHHHHHHHcCch
Confidence 3467788888887777666666666555443301 11222222232 22222 11111 1346
Q ss_pred HHHHHHHHHHHhhccChhhHHHHHHcCChHHHHHhhcCC-ChHHHHHHHHHHHHhhcc
Q 017249 84 AIESSLLALLNLAVRNERNKVKIATAGAIPPLVELLKFQ-NGTLRELAAAAILTLSAA 140 (375)
Q Consensus 84 ~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~-~~~~~~~a~~~L~~Ls~~ 140 (375)
.|..++..|+.+....+.---.|.+...++-|+.+|... +..+...|+.+|..|.-.
T Consensus 84 ~Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~LimlLP~ 141 (668)
T PF04388_consen 84 YRLQALTLLGHFVRSQPPWLYKILQTPLFKSLLKCLQFDTSITVVSSALLVLIMLLPH 141 (668)
T ss_pred hHHHHHHHHHHHHhcCCchHHHHhcChhHHHHHHHHhhcccHHHHHHHHHHHHHHhcc
Confidence 788999999999987777777888888999999988665 677777787777776543
No 341
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=41.16 E-value=17 Score=22.13 Aligned_cols=26 Identities=19% Similarity=0.248 Sum_probs=20.2
Q ss_pred cCChHHHHHHhhhCCHHHHHHHHHHH
Q 017249 278 EGAIPGLLRLTVEGTFEAQERARTLL 303 (375)
Q Consensus 278 ~g~v~~L~~ll~~~~~~~~~~A~~~L 303 (375)
..+...+...+.+.++.+|+.|+.+|
T Consensus 17 ~~v~~~i~~rl~D~s~~VR~aav~ll 42 (42)
T PF12765_consen 17 SDVQSAIIRRLSDSSPSVREAAVDLL 42 (42)
T ss_pred HHHHHHHHHHhcCCChHHHHHHHHHC
Confidence 34566667778889999999998764
No 342
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=40.38 E-value=4.5e+02 Score=27.39 Aligned_cols=319 Identities=13% Similarity=0.103 Sum_probs=158.1
Q ss_pred HHHHHhhHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCC--------CCHHHHHHH
Q 017249 17 EAWNQRKQALIEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVS--------PNLDAIESS 88 (375)
Q Consensus 17 ~~~~~~~~~~l~~Lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~--------~~~~~~~~a 88 (375)
..+...-.+.+.+-+..-..+... -..|+.++..+.... ....+ .|.++.++..|.. .++.-.+.|
T Consensus 363 ElfEnDp~eyirry~df~d~g~sp-dlaal~fl~~~~sKr---ke~Tf--qgiLsf~~sil~qsaa~psn~dnarq~ega 436 (970)
T COG5656 363 ELFENDPDEYIRRYYDFFDNGLSP-DLAALFFLIISKSKR---KEETF--QGILSFLLSILGQSAATPSNIDNARQAEGA 436 (970)
T ss_pred HHHhcCHHHHHHHhcchhcCCCCh-hHHHHHHHHHHhccc---chhhh--hhHHHHHHHHHhcccCCCCccccHHHHhhH
Confidence 344444555666666665543222 123444444443333 11111 3778888888821 124445677
Q ss_pred HHHHHHhhc--cChhhHHHHHHcCChHHHHHhhcCCChHHHHHHHHHHHHhhccCCChhHHHhcCChHHHHHHhccCCHH
Q 017249 89 LLALLNLAV--RNERNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHSGSVQ 166 (375)
Q Consensus 89 ~~~L~~L~~--~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~l~~L~~lL~~~~~~ 166 (375)
++.+.++.. ....--+-+.+.=.++.++..++++.--++..++..+..+..+-+..... ....+....++++++..
T Consensus 437 lr~lasi~s~itk~sp~an~me~fiv~hv~P~f~s~ygfL~Srace~is~~eeDfkd~~il--l~aye~t~ncl~nn~lp 514 (970)
T COG5656 437 LRLLASIKSFITKMSPAANVMEYFIVNHVIPAFRSNYGFLKSRACEFISTIEEDFKDNGIL--LEAYENTHNCLKNNHLP 514 (970)
T ss_pred HHHHHHHHHHhccCchHHHHHHHHHHHHhhHhhcCcccchHHHHHHHHHHHHHhcccchHH--HHHHHHHHHHHhcCCcc
Confidence 777777654 12222233334445667777778888888999999999996653332222 34466677778888888
Q ss_pred HHHHHHHHHHHhccCCCCchhhhh--cCCcHHHHHHhhhcccchHHHHHHHH-HHHHhh----CC-hhhhHHHhhccCcH
Q 017249 167 GRVDAVTALHYLSTCKENSSPILD--ATAVPPLINLLKDCKKYSKFAEKATA-LLEILS----SS-EEGRIAITNSDGGI 238 (375)
Q Consensus 167 ~~~~a~~~L~~L~~~~~~~~~i~~--~g~i~~Lv~ll~~~~~~~~~~~~a~~-~L~~l~----~~-~~~~~~~~~~~g~v 238 (375)
++..|+.++..+..++.....+.. .+.++.|+.+-..-. .+..-.+.. .....+ .. ++-...+++ ..+
T Consensus 515 v~ieAalAlq~fi~~~q~h~k~sahVp~tmekLLsLSn~fe--iD~LS~vMe~fVe~fseELspfa~eLa~~Lv~--qFl 590 (970)
T COG5656 515 VMIEAALALQFFIFNEQSHEKFSAHVPETMEKLLSLSNTFE--IDPLSMVMESFVEYFSEELSPFAPELAGSLVR--QFL 590 (970)
T ss_pred hhhhHHHHHHHHHhchhhhHHHHhhhhHHHHHHHHhccccc--chHHHHHHHHHHHHhHHhhchhHHHHHHHHHH--HHH
Confidence 888999999888777654444433 244555555433321 111111111 111121 11 111112221 122
Q ss_pred HHHHHHhccC------ChHHHHHHHHHHHHhcc-----cCcHHHHHHHHHcCChHHHHHHhhhCCHHHHHHHHHHHHHhh
Q 017249 239 LTLVETVEDG------SLVSTQHAVGALLSLCQ-----SCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLR 307 (375)
Q Consensus 239 ~~Lv~lL~~~------~~~~~~~a~~~L~~l~~-----~~~~~~~~~l~~~g~v~~L~~ll~~~~~~~~~~A~~~L~~l~ 307 (375)
.-...++..+ .+.-+..|.+.|..+.. ...+...+.+ +....|..--++.+.-...-..|+.+|..++
T Consensus 591 kiaq~l~ens~d~~s~vDDKqmaasGiL~T~~smiLSlen~p~vLk~l-e~slypvi~Filkn~i~dfy~Ea~dildg~t 669 (970)
T COG5656 591 KIAQSLLENSSDTSSVVDDKQMAASGILRTIESMILSLENRPLVLKYL-EVSLYPVISFILKNEISDFYQEALDILDGYT 669 (970)
T ss_pred HHHHHHHcCCccccccccHHHHHHHHHHHHHHHHHHhcccchHHHHHH-HHHHHHHHHHHHhhhHHHHHHHHHHHHhhhh
Confidence 2233334322 12334556666654422 2222222221 2233333333555555666677777777766
Q ss_pred cCChh-hhhhhhhHHHHHHHHhhcCCChHHHHHHHHHHHHHHHH
Q 017249 308 DTPQE-KRLSSSVLEKIVYDIAARVDGADKAAETAKRLLQDMVQ 350 (375)
Q Consensus 308 ~~~~~-~~~~~g~~~~l~~~l~~~~~g~~~~~~~a~~~l~~l~~ 350 (375)
-...+ .-+.-|+++-+...+. ..++..=-+.+.-++.+++-
T Consensus 670 f~skeI~pimwgi~Ell~~~l~--~~~t~~y~ee~~~al~nfit 711 (970)
T COG5656 670 FMSKEIEPIMWGIFELLLNLLI--DEITAVYSEEVADALDNFIT 711 (970)
T ss_pred HHHHHhhhhhhHHHHHHHhccc--ccchhhhHHHHHHHHHHHHH
Confidence 54432 2233344443333332 22222223666777777753
No 343
>PF04499 SAPS: SIT4 phosphatase-associated protein; InterPro: IPR007587 The SAPS family consists of proteins that associate with the SIT4 phosphatase protein []. This association is required for SIT4's role in G1 cyclin transcription and for bud formation in yeast.
Probab=39.71 E-value=3.2e+02 Score=26.78 Aligned_cols=107 Identities=18% Similarity=0.197 Sum_probs=65.2
Q ss_pred CChHHHHHhhCCCCHHHHHHHHHHHHHhhccC----hhhHHHHHHcCChHHHHHhhcCC-ChHHHHHHHHHHHHhhccCC
Q 017249 68 GVVQPLVLMLVSPNLDAIESSLLALLNLAVRN----ERNKVKIATAGAIPPLVELLKFQ-NGTLRELAAAAILTLSAAAP 142 (375)
Q Consensus 68 g~v~~Lv~~L~~~~~~~~~~a~~~L~~L~~~~----~~~r~~i~~~g~i~~Lv~lL~~~-~~~~~~~a~~~L~~Ls~~~~ 142 (375)
++|+.+++.+..+ .+.+--++.+. .+. .....++.+.+.++.|+.+|... +++++..|+.+|..+..-..
T Consensus 21 ~~v~~llkHI~~~--~ImDlLLklIs---~d~~~~~~~ilewL~~q~LI~~Li~~L~p~~~~~~q~naa~~L~aII~is~ 95 (475)
T PF04499_consen 21 NFVDNLLKHIDTP--AIMDLLLKLIS---TDKPESPTGILEWLAEQNLIPRLIDLLSPSYSSDVQSNAADFLKAIIRISR 95 (475)
T ss_pred cHHHHHHHhcCCc--HHHHHHHHHHc---cCcccchHHHHHHHHHhCHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhh
Confidence 5666666666543 33333333333 222 23455666789999999999744 77888899888877643211
Q ss_pred ------------C--hhHHHhcCChHHHHHHhcc-CCHHHHHHHHHHHHHhc
Q 017249 143 ------------N--KPAIAASGAAPLLVQILHS-GSVQGRVDAVTALHYLS 179 (375)
Q Consensus 143 ------------~--~~~i~~~~~l~~L~~lL~~-~~~~~~~~a~~~L~~L~ 179 (375)
+ -..+.....+..|++.+-. .......+++.++..|.
T Consensus 96 n~~~~~~~~igpn~L~r~L~S~~~v~~Ll~~mL~~~~~s~lvn~v~IlieLI 147 (475)
T PF04499_consen 96 NAPQNEQSSIGPNPLTRQLVSEETVEKLLDIMLNSQGGSSLVNGVSILIELI 147 (475)
T ss_pred ccccccccCCCccHHHHHHhChHHHHHHHHHHhcCCCcchHHHHHHHHHHHH
Confidence 1 1234456677777776553 33556777777777665
No 344
>PF03130 HEAT_PBS: PBS lyase HEAT-like repeat; InterPro: IPR004155 These proteins contain a short bi-helical repeat that is related to HEAT. Cyanobacteria and red algae harvest light energy using macromolecular complexes known as phycobilisomes (PBS), peripherally attached to the photosynthetic membrane. The major components of PBS are the phycobiliproteins. These heterodimeric proteins are covalently attached to phycobilins: open-chain tetrapyrrole chromophores, which function as the photosynthetic light-harvesting pigments. Phycobiliproteins differ in sequence and in the nature and number of attached phycobilins to each of their subunits. These proteins include the lyase enzymes that specifically attach particular phycobilins to apophycobiliprotein subunits. The most comprehensively studied of these is the CpcE/Flyase P31967 from SWISSPROT, P31968 from SWISSPROT, which attaches phycocyanobilin (PCB) to the alpha subunit of apophycocyanin []. Similarly, MpeU/V attaches phycoerythrobilin to phycoerythrin II, while CpeY/Z is thought to be involved in phycoerythrobilin (PEB) attachment to phycoerythrin (PE) I (PEs I and II differ in sequence and in the number of attached molecules of PEB: PE I has five, PE II has six) []. All the reactions of the above lyases involve an apoprotein cysteine SH addition to a terminal delta 3,3'-double bond. Such a reaction is not possible in the case of phycoviolobilin (PVB), the phycobilin of alpha-phycoerythrocyanin (alpha-PEC). It is thought that in this case, PCB, not PVB, is first added to apo-alpha-PEC, and is then isomerized to PVB. The addition reaction has been shown to occur in the presence of either of the components of alpha-PEC-PVB lyase PecE or PecF (or both). The isomerisation reaction occurs only when both PecE and PecF components are present, i.e. the PecE/F phycobiliprotein lyase is also a phycobilin isomerase []. Another member of this family is the NblB protein, whose similarity to the phycobiliprotein lyases was previously noted []. This constitutively expressed protein is not known to have any lyase activity. It is thought to be involved in the coordination of PBS degradation with environmental nutrient limitation. It has been suggested that the similarity of NblB to the phycobiliprotein lyases is due to the ability to bind tetrapyrrole phycobilins via the common repeated motif [].; PDB: 1TE4_A.
Probab=38.92 E-value=28 Score=18.68 Aligned_cols=25 Identities=12% Similarity=0.238 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHhhcCChhhhhhhhhHHHHHHHH
Q 017249 295 AQERARTLLDLLRDTPQEKRLSSSVLEKIVYDI 327 (375)
Q Consensus 295 ~~~~A~~~L~~l~~~~~~~~~~~g~~~~l~~~l 327 (375)
+|..|+++|..+.... .+++|+..|
T Consensus 1 VR~~Aa~aLg~igd~~--------ai~~L~~~L 25 (27)
T PF03130_consen 1 VRRAAARALGQIGDPR--------AIPALIEAL 25 (27)
T ss_dssp HHHHHHHHHGGG-SHH--------HHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHH--------HHHHHHHHh
Confidence 4667777777776632 555555444
No 345
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=38.84 E-value=1.7e+02 Score=24.65 Aligned_cols=77 Identities=9% Similarity=0.064 Sum_probs=51.3
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhccChhhHH
Q 017249 25 ALIEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIESSLLALLNLAVRNERNKV 104 (375)
Q Consensus 25 ~~l~~Lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~~~~~~~~~a~~~L~~L~~~~~~~r~ 104 (375)
...+.+...+.|+++-.+..++..+....... .. . ..+..+...+.+++.-++....++|..++..+++...
T Consensus 120 ~~~~~~~~W~~s~~~w~rR~~~v~~~~~~~~~--~~-~-----~~l~~~~~~~~d~~~~vq~ai~w~L~~~~~~~~~~v~ 191 (213)
T PF08713_consen 120 EALELLEKWAKSDNEWVRRAAIVMLLRYIRKE--DF-D-----ELLEIIEALLKDEEYYVQKAIGWALREIGKKDPDEVL 191 (213)
T ss_dssp GHHHHHHHHHHCSSHHHHHHHHHCTTTHGGGC--HH-H-----HHHHHHHHCTTGS-HHHHHHHHHHHHHHCTT-HHHHH
T ss_pred HHHHHHHHHHhCCcHHHHHHHHHHHHHHHHhc--CH-H-----HHHHHHHHHcCCchHHHHHHHHHHHHHHHHhCHHHHH
Confidence 34556667777888888888877766555443 11 1 1134444556777889999999999999988777666
Q ss_pred HHHHc
Q 017249 105 KIATA 109 (375)
Q Consensus 105 ~i~~~ 109 (375)
.++..
T Consensus 192 ~~l~~ 196 (213)
T PF08713_consen 192 EFLQK 196 (213)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66553
No 346
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=38.52 E-value=1.8e+02 Score=27.42 Aligned_cols=74 Identities=11% Similarity=0.101 Sum_probs=57.7
Q ss_pred HhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhC-CCCHHHHHHHHHHHHHhhc
Q 017249 24 QALIEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLV-SPNLDAIESSLLALLNLAV 97 (375)
Q Consensus 24 ~~~l~~Lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~-~~~~~~~~~a~~~L~~L~~ 97 (375)
.+.+..+.+.|...|+.+...|+..+..+..+.-...+..+....+...|..++. +.++.+++.....+.+++.
T Consensus 44 kd~lk~i~KRln~~dphV~L~AlTLlda~~~NCg~~~r~EVsSr~F~~el~al~~~~~h~kV~~k~~~lv~eWse 118 (462)
T KOG2199|consen 44 KDCLKAIMKRLNHKDPHVVLQALTLLDACVANCGKRFRLEVSSRDFTTELRALIESKAHPKVCEKMRDLVKEWSE 118 (462)
T ss_pred HHHHHHHHHHhcCCCcchHHHHHHHHHHHHHhcchHHHHHHhhhhHHHHHHHHHhhcccHHHHHHHHHHHHHHHH
Confidence 5678889999999999999999999988887662344555666688888888888 6677887777767766664
No 347
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=37.30 E-value=2.5e+02 Score=23.54 Aligned_cols=116 Identities=9% Similarity=-0.004 Sum_probs=67.0
Q ss_pred CcHHHHHHHhccCChHHHHHHHHHHHHhccc-CcHHHHHHHHHcCChHHHHHHhhhCCHHHHHHHHHHHHHhhcCChhhh
Q 017249 236 GGILTLVETVEDGSLVSTQHAVGALLSLCQS-CRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDTPQEKR 314 (375)
Q Consensus 236 g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~l~~~g~v~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~~~~ 314 (375)
-.++..+.=|.......+-.|...+..+... ..+.... +=...+.+|.+.+.+.++++...+..+|..|....+ .
T Consensus 38 ~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilP--vlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~--~ 113 (183)
T PF10274_consen 38 HYLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILP--VLPQLIIPLKRALNTRDPEVFCATLKALQQLVTSSD--M 113 (183)
T ss_pred hHHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHH--HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhh--h
Confidence 3444555555555555566666666666554 2111111 226788889999999999999999999999955442 2
Q ss_pred hhhhhHH---HHHHHHh---hcC---------CChHHHHHHHHHHHHHHHHHHHHH
Q 017249 315 LSSSVLE---KIVYDIA---ARV---------DGADKAAETAKRLLQDMVQRSMEL 355 (375)
Q Consensus 315 ~~~g~~~---~l~~~l~---~~~---------~g~~~~~~~a~~~l~~l~~~s~~~ 355 (375)
+....++ .|+..+. +.. ......++.....|+.|-+..-+.
T Consensus 114 vG~aLvPyyrqLLp~ln~f~~k~~n~gd~i~y~~~~~~~dlI~etL~~lE~~GG~d 169 (183)
T PF10274_consen 114 VGEALVPYYRQLLPVLNLFKNKNVNLGDGIDYRKRKNLGDLIQETLELLERNGGPD 169 (183)
T ss_pred hhHHHHHHHHHHHHHHHHHHhcccCCCcccccccccchhHHHHHHHHHHHHhcChh
Confidence 2222222 2332222 111 122455677777777776554433
No 348
>PF14666 RICTOR_M: Rapamycin-insensitive companion of mTOR, middle domain
Probab=36.74 E-value=2.9e+02 Score=24.07 Aligned_cols=130 Identities=16% Similarity=0.068 Sum_probs=82.4
Q ss_pred HHHHHHHHHHHHHhccCCCCchhhhhcCCcHHHHHHhhhcc------c------chH----HHHHHHHHHHHhhCChhhh
Q 017249 165 VQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDCK------K------YSK----FAEKATALLEILSSSEEGR 228 (375)
Q Consensus 165 ~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~~------~------~~~----~~~~a~~~L~~l~~~~~~~ 228 (375)
..-..-.|..+..|...++....+...+.++.+.+.|..-+ . ... +...=...|+.|+.++.+.
T Consensus 78 ~~y~~vGc~L~~~Ll~~~eG~~~l~~~~ll~qia~~L~~~d~~~g~~~~~~lfs~~~l~~tl~~~Yf~~IG~lS~~~~Gl 157 (226)
T PF14666_consen 78 QKYVRVGCQLLETLLSSPEGIKYLSESKLLPQIAECLAQVDPMSGITAHDPLFSPQRLSTTLSRGYFLFIGVLSSTPNGL 157 (226)
T ss_pred hHHHHHHHHHHHHHHcCcHHHHHHHHccHHHHHHHHHHHHhhhcCCcccccccCHHHHHhhHHHHHHHHHHHHhCChhHH
Confidence 44455667777777777776666667777777777665431 0 001 1122245678889999999
Q ss_pred HHHhhccCcHHHHHHHhccCChHHHHHHHHHHHHhcccCcHHHHHHHHHcCChHH-HHHHhhhCCHHHHHHHHHHHHHhh
Q 017249 229 IAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPG-LLRLTVEGTFEAQERARTLLDLLR 307 (375)
Q Consensus 229 ~~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~g~v~~-L~~ll~~~~~~~~~~A~~~L~~l~ 307 (375)
+.+- ..+.+..+.++....+. .....-+|.+|=... .|-... |-+.+.+++..+|..|...|+.+-
T Consensus 158 ~lLe-~~~if~~l~~i~~~~~~--~~l~klil~~LDY~~----------~~~~R~iLsKaLt~~s~~iRl~aT~~L~~ll 224 (226)
T PF14666_consen 158 KLLE-RWNIFTMLYHIFSLSSR--DDLLKLILSSLDYSV----------DGHPRIILSKALTSGSESIRLYATKHLRVLL 224 (226)
T ss_pred HHHH-HCCHHHHHHHHHccCch--HHHHHHHHhhCCCCC----------ccHHHHHHHHHHhcCCHHHHHHHHHHHHHHh
Confidence 8777 68999999999876432 122333444442221 222233 334788899999999999888764
No 349
>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]
Probab=35.79 E-value=4.2e+02 Score=31.72 Aligned_cols=267 Identities=19% Similarity=0.122 Sum_probs=121.7
Q ss_pred HHhcCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhc--CChHHHHHhh-----CCCCHHHHHHHHHHHHHhhccChhhHH
Q 017249 32 DKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAA--GVVQPLVLML-----VSPNLDAIESSLLALLNLAVRNERNKV 104 (375)
Q Consensus 32 ~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~--g~v~~Lv~~L-----~~~~~~~~~~a~~~L~~L~~~~~~~r~ 104 (375)
..+...+.+.+..+...+..+.... +.+++ .... ..+...++.+ ..+++.++......+. ...-.
T Consensus 488 ~~~~~~~~e~r~~~~l~~~~ll~~~-~~~~~-~~~~~~~~v~~vl~~ll~~aia~~~~~i~~~v~~~l~------~~~~~ 559 (2341)
T KOG0891|consen 488 SYLEADDSEIRKNAALTCCELLKYD-IICSQ-TSPHALQVVKEVLSALLTVAIADTDPDIRIRVLSSLN------ERFDA 559 (2341)
T ss_pred HHHhcccHHHHHHHHHHHHHHHhhh-hhhhc-ccchHHHHHHHHHHHHHHHhccCCCcchhhhHHhhhc------cchhh
Confidence 3444678888888877766666555 22000 0000 1122222222 3445565555544443 11222
Q ss_pred HHHHcCChHHHHHhhcCCChHHHHHHHHHHHHhhccCCC-hhHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccC-C
Q 017249 105 KIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPN-KPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTC-K 182 (375)
Q Consensus 105 ~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~-~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~~L~~~-~ 182 (375)
+....+-+..+...+.......++.+...+.+++...+. .-.......+..+.++..++...+...++.-+..+... +
T Consensus 560 ~laQ~~~lr~~~~al~~~~l~~~~~~~~~ig~l~~~~~a~vl~~lr~~~l~~~s~l~~sg~~r~~~~~a~~~~~~i~~~~ 639 (2341)
T KOG0891|consen 560 QLAQPDLLRLLFIALHDENFAIQELATVIIGRLSSYNPAYVLPSLRKTLLELLTELEFSGMARTKEESAKLLCELIISSP 639 (2341)
T ss_pred hhcCchhHHHHHHHhhhhhhhhHHhHHhhccccccccHHHHhHHHHHHHHHHhchhhhcchHHhHHHHHHHhhHHHHHHH
Confidence 334444455566666666777788888888877764431 11111222333333333344333333333222222211 1
Q ss_pred CCchhhhhcCCcHHHHHHhhhcccchHHHHHHHHHHHHhhCChhhhHHHhhccCcHHHHHHHhc-cCChHHHHHHHHHHH
Q 017249 183 ENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVE-DGSLVSTQHAVGALL 261 (375)
Q Consensus 183 ~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~Lv~lL~-~~~~~~~~~a~~~L~ 261 (375)
......+ ...+..++..+.+. ...+...+..++..||...-.-...... ..+..+...+. .++..-+..+.+++.
T Consensus 640 ~~i~~~v-~~~l~~~~~~~~~~--~s~~~~~~~~~~~eL~~v~g~~~~~~~~-~~~~~~~~~l~~~s~~~rr~aslk~l~ 715 (2341)
T KOG0891|consen 640 VLISPYV-GPILLVLLPKLQDP--SSGVEKAVLETIGELCAVGGEEMVKWVD-ELFSLIIKMLQDQSSLGKRLAALKALG 715 (2341)
T ss_pred HHHHhhc-CchHHHHHHHHhcc--chhhHHHHHHHHHHHHHhccchhhhccc-hHHHHHHHHHHHhhhhhchhHHHHHhh
Confidence 1111111 11223344444443 2245556677777777533211111101 23333334443 345666788999999
Q ss_pred HhcccCcHHHHHHHHHcCChHHHHHHhhh-CCHHHHHHHHHHHHHhhcCC
Q 017249 262 SLCQSCRDKYRQLILKEGAIPGLLRLTVE-GTFEAQERARTLLDLLRDTP 310 (375)
Q Consensus 262 ~l~~~~~~~~~~~l~~~g~v~~L~~ll~~-~~~~~~~~A~~~L~~l~~~~ 310 (375)
+++....--........-++..|...+.. -...++..++..+.++....
T Consensus 716 ~l~s~~~~~v~p~~~~P~ll~~l~~~~~te~~~~ir~~~v~~~g~~g~~d 765 (2341)
T KOG0891|consen 716 QLESSTGYVVDPYLDYPELLDILINILKTEQSSTIRREAIRLLGLLGALD 765 (2341)
T ss_pred hhhcccceEecccccChHHHHHHHHHHhHhhhhHHHHHHHHHhhhhcccc
Confidence 99876531001111112344444443333 34566666666776665443
No 350
>PF06012 DUF908: Domain of Unknown Function (DUF908); InterPro: IPR010309 This is a domain of unknown function found at the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately N-terminal to another domain of unknown function: IPR010314 from INTERPRO.
Probab=33.18 E-value=1.8e+02 Score=26.91 Aligned_cols=47 Identities=19% Similarity=0.223 Sum_probs=36.2
Q ss_pred hhhHHHHHhcC--ChHHHHHhhCCC---CHHHHHHHHHHHHHhhccChhhHH
Q 017249 58 LKTRSEFAAAG--VVQPLVLMLVSP---NLDAIESSLLALLNLAVRNERNKV 104 (375)
Q Consensus 58 ~~~~~~~~~~g--~v~~Lv~~L~~~---~~~~~~~a~~~L~~L~~~~~~~r~ 104 (375)
+.....+...+ .+..|+++++.+ ...++..|+.+|.-++.+.....+
T Consensus 253 ~~~~~~~l~~dp~l~~eL~eLi~~~~~v~~~i~~~Al~~L~ai~~~~~~~~~ 304 (329)
T PF06012_consen 253 SQFSSKLLEQDPELVNELVELISPEEKVPMDIQTAALRALEAISHKRPRCSD 304 (329)
T ss_pred HHHHHHHHhcChHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHhccccHHH
Confidence 46666777665 999999999775 468899999999999986544443
No 351
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=33.01 E-value=2.8e+02 Score=29.72 Aligned_cols=113 Identities=12% Similarity=0.097 Sum_probs=66.1
Q ss_pred hHHHHHhhHhHHHHHHHHhc-CCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHH
Q 017249 16 EEAWNQRKQALIEELSDKLI-NGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIESSLLALLN 94 (375)
Q Consensus 16 ~~~~~~~~~~~l~~Lv~~L~-s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~~~~~~~~~a~~~L~~ 94 (375)
+.....+....+..+++.++ .+...++..|+..+.....+. +. ..+.+.| +-.|-.+..++-..++..++..|..
T Consensus 567 ~~ge~~~e~~V~~mi~Rr~~~d~k~~v~k~a~~~l~S~l~~c-D~--~~~fe~~-L~iLq~lCrd~~vsvrk~~~~Slte 642 (1529)
T KOG0413|consen 567 NKGETRVEKDVVYMIVRRLSTDDKAPVKKAACSLLKSYLSYC-DE--ASKFEVV-LSILQMLCRDRMVSVRKTGADSLTE 642 (1529)
T ss_pred hccccHHHHHHHHHHHHHhccCCCcccchhhHHHHHHHHhcc-ch--hhcchhH-HHHHHHHhcCcchHHHHHHHHHHHH
Confidence 33445566778888888888 444456777888777766555 11 1111122 3333344466667888888888888
Q ss_pred hhccChhhHHHHHHcCChHHHHHhhcCCChHHHHHHHHHH
Q 017249 95 LAVRNERNKVKIATAGAIPPLVELLKFQNGTLRELAAAAI 134 (375)
Q Consensus 95 L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L 134 (375)
+-...+.+- -+....+..|+.++......++++|...|
T Consensus 643 l~~~~pr~~--~~~~~wl~~li~~~~d~es~v~e~a~~~i 680 (1529)
T KOG0413|consen 643 LMLRDPRLF--SLSSKWLHTLISMLNDTESDVTEHARKLI 680 (1529)
T ss_pred HHhhCchhh--hhhHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 776555433 22333445556666555555555555433
No 352
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=32.80 E-value=88 Score=24.43 Aligned_cols=49 Identities=20% Similarity=0.133 Sum_probs=37.9
Q ss_pred hHHHHHHHHHHHHhcccCcHHHHHHHHHcCChHHHHHHhhhCCHHHHHHHHHHH
Q 017249 250 LVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLL 303 (375)
Q Consensus 250 ~~~~~~a~~~L~~l~~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~~~~~A~~~L 303 (375)
..+...++.++.......+ ...+.+.+.++.+..++ .++..++.|+.+|
T Consensus 100 ~~~~~~~L~~l~s~i~~~~---~~~i~~~~~l~~~~~~l--~~~~~~~~A~~cl 148 (148)
T PF08389_consen 100 EELVKAALKCLKSWISWIP---IELIINSNLLNLIFQLL--QSPELREAAAECL 148 (148)
T ss_dssp HHHHHHHHHHHHHHTTTS----HHHHHSSSHHHHHHHHT--TSCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCC---HHHhccHHHHHHHHHHc--CCHHHHHHHHHhC
Confidence 7788899999999888652 45667778999999988 4556688888775
No 353
>KOG2149 consensus Uncharacterized conserved protein [Function unknown]
Probab=32.19 E-value=2.9e+02 Score=26.21 Aligned_cols=120 Identities=12% Similarity=0.132 Sum_probs=78.9
Q ss_pred HHhhHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhccC
Q 017249 20 NQRKQALIEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIESSLLALLNLAVRN 99 (375)
Q Consensus 20 ~~~~~~~l~~Lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~~~~~~~~~a~~~L~~L~~~~ 99 (375)
...+.-.+..|+..++.-+..++..|+.-|..+.... +.... .--.-+++.+.++..+.+..+|......+-.+....
T Consensus 53 t~~k~ltlkeLl~qlkHhNakvRkdal~glkd~l~s~-p~~l~-~~~~~ll~~~~~~i~D~~~~vR~~~~qll~~~i~~~ 130 (393)
T KOG2149|consen 53 TSKKGLTLKELLSQLKHHNAKVRKDALNGLKDLLKSH-PAELQ-SHLYALLQKLRELILDDDSLVRDALYQLLDSLILPA 130 (393)
T ss_pred cccccccHHHHHhhhcCchHhhhHHHHHHHHHHHHhC-hHHHH-HHHHHHHHHhhhhhcCccccHHHHHHHHHHHHHhhc
Confidence 3345556888999999899999999999999988775 22211 111245667777777888888888888777755321
Q ss_pred hhhH-HHHHHcCChHHHHHhhcCCChHHHHHHHHHHHHhhccCC
Q 017249 100 ERNK-VKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAP 142 (375)
Q Consensus 100 ~~~r-~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~ 142 (375)
.... ..++ .=.++.+...+.+..++++.-++..|.-|...-+
T Consensus 131 ~~e~~sp~~-~l~~~yi~~AMThit~~i~~dslkfL~~Ll~~~~ 173 (393)
T KOG2149|consen 131 CKEDQSPMV-SLLMPYISSAMTHITPEIQEDSLKFLSLLLERYP 173 (393)
T ss_pred chhhhcchH-HHHHHHHHHHHhhccHHHHHhhHHHHHHHHHHcC
Confidence 1111 1111 1123445555566789999999998888876543
No 354
>PF12331 DUF3636: Protein of unknown function (DUF3636) ; InterPro: IPR022093 This domain family is found in eukaryotes, and is approximately 160 amino acids in length.
Probab=31.93 E-value=87 Score=25.19 Aligned_cols=39 Identities=21% Similarity=0.237 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHhhCChhhhHHHhhccCcHHHHHHHhcc
Q 017249 209 KFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVED 247 (375)
Q Consensus 209 ~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~ 247 (375)
.++..++..|..++.++.+..++..+..++++|+..|.+
T Consensus 109 ~lRl~aL~~L~~fa~s~~G~~~LA~h~~Ai~RLv~~L~~ 147 (149)
T PF12331_consen 109 TLRLEALRTLTSFAFSPFGALQLASHPTAIPRLVRALHD 147 (149)
T ss_pred HHHHHHHHHHHHHHcCcHHHHHHHhCchhHHHHHHHHHc
Confidence 467788999999999999999999888899999998864
No 355
>cd00864 PI3Ka Phosphoinositide 3-kinase family, accessory domain (PIK domain); PIK domain is conserved in PI3 and PI4-kinases. Its role is unclear, but it has been suggested to be involved in substrate presentation. Phosphoinositide 3-kinases play an important role in a variety of fundamental cellular processes and can be divided into three main classes, defined by their substrate specificity and domain architecture.
Probab=31.83 E-value=2.7e+02 Score=22.40 Aligned_cols=77 Identities=17% Similarity=0.107 Sum_probs=47.5
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCC--CCHHHHHHHHHHHHHhhccChhh
Q 017249 25 ALIEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVS--PNLDAIESSLLALLNLAVRNERN 102 (375)
Q Consensus 25 ~~l~~Lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~--~~~~~~~~a~~~L~~L~~~~~~~ 102 (375)
..++.++..+.-.+++...++...|..-..-+ ....+++|+. .++.++..|++.|..+..+ +.
T Consensus 39 ~~lp~~L~sv~w~~~~~~~e~~~lL~~W~~~~-------------~~~aL~LL~~~~~~~~vr~yAv~~L~~~~~~--~l 103 (152)
T cd00864 39 KALPKLLKSVNWNDDEEVSELYQLLKWWAPLS-------------PEDALELLSPKYPDPVVRQYAVRVLESASDD--EL 103 (152)
T ss_pred HHHHHHHHHccCCCHHHHHHHHHHHhcCCCCC-------------HHHHHHHcCCcCCCHHHHHHHHHHHHhCCHH--HH
Confidence 56677776666566666655555554433222 3345666765 4689999999999886642 11
Q ss_pred HHHHHHcCChHHHHHhhcCC
Q 017249 103 KVKIATAGAIPPLVELLKFQ 122 (375)
Q Consensus 103 r~~i~~~g~i~~Lv~lL~~~ 122 (375)
...+|.||+.|+-.
T Consensus 104 ------~~ylpQLVQaLkye 117 (152)
T cd00864 104 ------LLYLPQLVQALKYE 117 (152)
T ss_pred ------HHHHHHHHHHHhcc
Confidence 12367777777544
No 356
>KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=31.10 E-value=2.1e+02 Score=27.93 Aligned_cols=72 Identities=14% Similarity=0.122 Sum_probs=56.5
Q ss_pred HhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCChhh-HHHHHhcCChHHHHHhhCCC--CHHHHHHHHHHHHHhh
Q 017249 24 QALIEELSDKLINGDLETKIEAARDIRKVVKKSSLKT-RSEFAAAGVVQPLVLMLVSP--NLDAIESSLLALLNLA 96 (375)
Q Consensus 24 ~~~l~~Lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~-~~~~~~~g~v~~Lv~~L~~~--~~~~~~~a~~~L~~L~ 96 (375)
.+++..|.+.+++.++.++..|+..|--+..+. ... ...+++.+++..+|.+.+.. +..+|+.++..|-...
T Consensus 37 ~eAvralkKRi~~k~s~vq~lALtlLE~cvkNC-G~~fh~~Va~k~fL~emVk~~k~~~~~~~Vr~kiL~LI~~W~ 111 (470)
T KOG1087|consen 37 KEAVRALKKRLNSKNSKVQLLALTLLETCVKNC-GYSFHLQVASKEFLNEMVKRPKNKPRDLKVREKILELIDTWQ 111 (470)
T ss_pred HHHHHHHHHHhccCCcHHHHHHHHHHHHHHHhh-hHHHHHHHHHHHHHHHHHhccccCCcchhHHHHHHHHHHHHH
Confidence 367788888888888899999999777777766 333 44677889999999888654 6789999998887654
No 357
>PF04821 TIMELESS: Timeless protein; InterPro: IPR006906 The timeless gene in Drosophila melanogaster (Fruit fly) and its homologues in a number of other insects and mammals (including human) are involved in circadian rhythm control []. This family includes related proteins from a number of fungal species and from Arabidopsis thaliana.
Probab=30.98 E-value=3.9e+02 Score=23.84 Aligned_cols=113 Identities=16% Similarity=0.077 Sum_probs=66.7
Q ss_pred HHHHhhhcccchHHHHHHHHHHHHhhCCh-------------------------hhhHHHhhccCcHHHHHHHhcc----
Q 017249 197 LINLLKDCKKYSKFAEKATALLEILSSSE-------------------------EGRIAITNSDGGILTLVETVED---- 247 (375)
Q Consensus 197 Lv~ll~~~~~~~~~~~~a~~~L~~l~~~~-------------------------~~~~~~~~~~g~v~~Lv~lL~~---- 247 (375)
|+-+|.+...+..+...++++|.+|+.-- ..+..+. ..+.+..++.++..
T Consensus 46 LiPiL~~~~~~~~l~~~~l~LLV~LT~P~~~~~~~~~~~~~~~~~~~~l~~~l~~yK~afl-~~~~l~~~~~~l~~~l~~ 124 (266)
T PF04821_consen 46 LIPILISYKDDDKLFLACLRLLVNLTWPIELLVESQPKDKNQRRNIPELLKYLQSYKEAFL-DPRVLKALIRLLLPPLEK 124 (266)
T ss_pred HHHHHHhccCchHHHHHHHHHHHHhCCCHHHhccCCCCChHHHHHHHHHHHHHHHHHHHHc-ccHHHHHHHHHHhHHhhc
Confidence 44455554445567777888888887511 1122233 45666666665521
Q ss_pred -------CChHHHHHHHHHHHHhcccCc---------------HHHHHHHHHcCChHHHHHHhhhCC-HHHHHHHHHHHH
Q 017249 248 -------GSLVSTQHAVGALLSLCQSCR---------------DKYRQLILKEGAIPGLLRLTVEGT-FEAQERARTLLD 304 (375)
Q Consensus 248 -------~~~~~~~~a~~~L~~l~~~~~---------------~~~~~~l~~~g~v~~L~~ll~~~~-~~~~~~A~~~L~ 304 (375)
.+..+-+..+..+.|+..-.. ++..+.+.+.|+...|+.+..+.+ ..-......++.
T Consensus 125 ~~~~rt~~d~~ii~lvL~LiRNlL~Ip~~~~~~~~~~~~~~~~d~li~~l~~~~v~~lLL~l~s~~~~~~f~~~lLEIi~ 204 (266)
T PF04821_consen 125 DWEDRTERDNLIIELVLTLIRNLLAIPDPPSASKRSDEDSSLHDQLIWALFESGVLDLLLTLASSPQESDFNLLLLEIIY 204 (266)
T ss_pred ccccCCHHHHHHHHHHHHHHHHHhcCCCCcccccccchhHHHHHHHHHHHHHcCHHHHHHHHHhCccccchhhHHHHHHH
Confidence 124566788888899866411 234566667889999998887652 222235556777
Q ss_pred HhhcCC
Q 017249 305 LLRDTP 310 (375)
Q Consensus 305 ~l~~~~ 310 (375)
.+-+..
T Consensus 205 ll~k~~ 210 (266)
T PF04821_consen 205 LLFKGQ 210 (266)
T ss_pred HHHcCC
Confidence 666555
No 358
>TIGR00117 acnB aconitate hydratase 2. Aconitate hydratase (aconitase) is an enzyme of the TCA cycle. This model describes aconitase 2, AcnB, which has weak similarity to aconitase 1. It is found almost exclusively in the Proteobacteria.
Probab=30.89 E-value=1.5e+02 Score=31.12 Aligned_cols=25 Identities=28% Similarity=0.501 Sum_probs=15.7
Q ss_pred hHHHHHhhcCCChHHHHHHHHHHHH
Q 017249 112 IPPLVELLKFQNGTLRELAAAAILT 136 (375)
Q Consensus 112 i~~Lv~lL~~~~~~~~~~a~~~L~~ 136 (375)
+++|+.+|.+.+.++-..|+.+|.+
T Consensus 99 ~~~l~~~~~~~~~~~a~~a~~~l~~ 123 (844)
T TIGR00117 99 VHPLIDALDSQDANIAPIAAKALSH 123 (844)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHhc
Confidence 5566666666666666666666655
No 359
>smart00567 EZ_HEAT E-Z type HEAT repeats. Present in subunits of cyanobacterial phycocyanin lyase, and other proteins. Probable scaffolding role.
Probab=30.60 E-value=73 Score=17.24 Aligned_cols=17 Identities=24% Similarity=0.151 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHhhcCC
Q 017249 294 EAQERARTLLDLLRDTP 310 (375)
Q Consensus 294 ~~~~~A~~~L~~l~~~~ 310 (375)
.+|..|+.+|.++....
T Consensus 2 ~vR~~aa~aLg~~~~~~ 18 (30)
T smart00567 2 LVRHEAAFALGQLGDEE 18 (30)
T ss_pred HHHHHHHHHHHHcCCHh
Confidence 46788888888875443
No 360
>KOG4231 consensus Intracellular membrane-bound Ca2+-independent phospholipase A2 [Lipid transport and metabolism]
Probab=30.39 E-value=1e+02 Score=30.09 Aligned_cols=61 Identities=15% Similarity=0.142 Sum_probs=47.6
Q ss_pred cCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhc-CChHHHHHhhCCCCHHHHHHHHHHHHHhhc
Q 017249 35 INGDLETKIEAARDIRKVVKKSSLKTRSEFAAA-GVVQPLVLMLVSPNLDAIESSLLALLNLAV 97 (375)
Q Consensus 35 ~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~-g~v~~Lv~~L~~~~~~~~~~a~~~L~~L~~ 97 (375)
...+++.+.+|..++.+++... ++|...... ..-..+++++-.+.+++-+.+.+++..+..
T Consensus 338 a~~n~~l~~qa~~~v~~~~~~~--~~r~~~~tsp~l~~~~~~~i~~~~~~~~~~~~~a~~~~~~ 399 (763)
T KOG4231|consen 338 AHKNPELQRQALLAVGNLAFCL--ENRRILITSPSLRELLMRLIVTPEPRVNKAAARALAILGE 399 (763)
T ss_pred cccChHHHHHHHHHHHHheecc--cccccccCChHHHHHHHHHhcccccccchhhhHHHHHhhh
Confidence 3678999999999999999998 676655433 455567788888888888888888877765
No 361
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=30.07 E-value=3.9e+02 Score=23.64 Aligned_cols=75 Identities=21% Similarity=0.300 Sum_probs=45.7
Q ss_pred cCChHHHHHhhCCCCHHHHHHHHHHHHHhhccChhhHHHHH--HcCChHHHHHhhcCC--ChHHHHHHHHHHHHhhccCC
Q 017249 67 AGVVQPLVLMLVSPNLDAIESSLLALLNLAVRNERNKVKIA--TAGAIPPLVELLKFQ--NGTLRELAAAAILTLSAAAP 142 (375)
Q Consensus 67 ~g~v~~Lv~~L~~~~~~~~~~a~~~L~~L~~~~~~~r~~i~--~~g~i~~Lv~lL~~~--~~~~~~~a~~~L~~Ls~~~~ 142 (375)
....++++++++.++.. ... .++-.. .+.....+. ..|-++.|.+++.++ +.-+|..|+.+|..+....+
T Consensus 72 ~~A~~~li~l~~~~~~~-~~~---l~GD~~--tE~l~~ilasv~~G~~~~L~~li~~~~~~~yvR~aa~~aL~~l~~~~~ 145 (249)
T PF06685_consen 72 ERALPPLIRLFSQDDDF-LED---LFGDFI--TEDLPRILASVGDGDIEPLKELIEDPDADEYVRMAAISALAFLVHEGP 145 (249)
T ss_pred hhhHHHHHHHHcCCcch-HHH---HHcchh--HhHHHHHHHHHhCCCHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHcCC
Confidence 34689999999766431 110 111111 112222222 246688899998887 57789999999999987765
Q ss_pred -ChhHH
Q 017249 143 -NKPAI 147 (375)
Q Consensus 143 -~~~~i 147 (375)
.|..+
T Consensus 146 ~~Re~v 151 (249)
T PF06685_consen 146 ISREEV 151 (249)
T ss_pred CCHHHH
Confidence 34444
No 362
>COG5537 IRR1 Cohesin [Cell division and chromosome partitioning]
Probab=29.92 E-value=4.8e+02 Score=26.41 Aligned_cols=104 Identities=13% Similarity=0.031 Sum_probs=73.0
Q ss_pred HHHhcCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhccChhhHHHHHH--
Q 017249 31 SDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIESSLLALLNLAVRNERNKVKIAT-- 108 (375)
Q Consensus 31 v~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~~~~~~~~~a~~~L~~L~~~~~~~r~~i~~-- 108 (375)
|....+-++..+..++..+......- | +.+.+-.+++..-..|++.+..++.....+|..|+...+. ...+..
T Consensus 281 vsRy~Dv~d~IRv~c~~~L~dwi~lv-P---~yf~k~~~lry~GW~LSDn~~~vRl~v~Kil~~L~s~~p~-~d~ir~f~ 355 (740)
T COG5537 281 VSRYIDVDDVIRVLCSMSLRDWIGLV-P---DYFRKILGLRYNGWSLSDNHEGVRLLVSKILLFLCSRIPH-TDAIRRFV 355 (740)
T ss_pred hhhccchhHHHHHHHHHHHHHHHhcc-h---HHHHhhhcccccccccccchHHHHHHHHHHHHHHHhcCCc-chHHHHHH
Confidence 34444567778888888888877665 3 2344444778888889999999999999999999986553 333332
Q ss_pred cCChHHHHHhhcCCChHHHHHHHHHHHHhhc
Q 017249 109 AGAIPPLVELLKFQNGTLRELAAAAILTLSA 139 (375)
Q Consensus 109 ~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~ 139 (375)
...-..+++++..+..-+|..++..+..+..
T Consensus 356 eRFk~rILE~~r~D~d~VRi~sik~l~~lr~ 386 (740)
T COG5537 356 ERFKDRILEFLRTDSDCVRICSIKSLCYLRI 386 (740)
T ss_pred HHHHHHHHHHHhhccchhhHHHHHHHHHHHH
Confidence 2345567777766655588888888877643
No 363
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=29.57 E-value=6.5e+02 Score=26.01 Aligned_cols=135 Identities=17% Similarity=0.115 Sum_probs=81.7
Q ss_pred CChHHHHHhhcCCChHHHHHHHHHHHHhhccCCChhHHHhcCChHHHHHHh-ccCCHHHHHHHHHHHHHhccCCCCchhh
Q 017249 110 GAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQIL-HSGSVQGRVDAVTALHYLSTCKENSSPI 188 (375)
Q Consensus 110 g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~l~~L~~lL-~~~~~~~~~~a~~~L~~L~~~~~~~~~i 188 (375)
.-|..|+.+|++.+..+.+.+-..+..+...+...+ .+..|++.. ..++. .++.+|..+ .+..-.
T Consensus 4 ~~~~~l~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~------l~~~l~~y~~~t~s~----~~~~il~~~--~~P~~K-- 69 (668)
T PF04388_consen 4 ASITELLSLLESNDLSVLEEIKALLQELLNSDREPW------LVNGLVDYYLSTNSQ----RALEILVGV--QEPHDK-- 69 (668)
T ss_pred ccHHHHHHHhcCCchhhHHHHHHHHHHHhhccchHH------HHHHHHHHHhhcCcH----HHHHHHHhc--CCccHH--
Confidence 346788999999988888888777776655433222 244555542 33333 233343322 111111
Q ss_pred hhcCCcHHHHHHhhhcccchHHHHHHHHHHHHhhC-ChhhhHHHhhccCcHHHHHHHhc-cCChHHHHHHHHHHHHhccc
Q 017249 189 LDATAVPPLINLLKDCKKYSKFAEKATALLEILSS-SEEGRIAITNSDGGILTLVETVE-DGSLVSTQHAVGALLSLCQS 266 (375)
Q Consensus 189 ~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~-~~~~~~~~~~~~g~v~~Lv~lL~-~~~~~~~~~a~~~L~~l~~~ 266 (375)
..+..|-..+... ..+..++.+|+.+.. .+...-.+. +...++.|+..|. +.+..+...|+.+|..|.-.
T Consensus 70 ---~~~~~l~~~~~~~----~~Rl~~L~Ll~~~v~~qp~~l~~i~-~t~Lf~~LLk~L~~D~~~~~~~~al~~LimlLP~ 141 (668)
T PF04388_consen 70 ---HLFDKLNDYFVKP----SYRLQALTLLGHFVRSQPPWLYKIL-QTPLFKSLLKCLQFDTSITVVSSALLVLIMLLPH 141 (668)
T ss_pred ---HHHHHHHHHHcCc----hhHHHHHHHHHHHHhcCCchHHHHh-cChhHHHHHHHHhhcccHHHHHHHHHHHHHHhcc
Confidence 1223343444432 345668889998876 577777777 6889999998886 45677777888888776544
No 364
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=29.39 E-value=3.8e+02 Score=26.50 Aligned_cols=173 Identities=16% Similarity=0.111 Sum_probs=91.2
Q ss_pred CCCCHHHHHHHHHHHHHhhccChhhHHHHHHcCChHHHHHhhc--C---------CChHHHHHHHHHHHHhhccCCChhH
Q 017249 78 VSPNLDAIESSLLALLNLAVRNERNKVKIATAGAIPPLVELLK--F---------QNGTLRELAAAAILTLSAAAPNKPA 146 (375)
Q Consensus 78 ~~~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~--~---------~~~~~~~~a~~~L~~Ls~~~~~~~~ 146 (375)
.+++.++...|-..|..+..+ +-+...+..|+.+.. . .++.+|...+..|..=....
T Consensus 247 ad~~~~V~~~ae~~LKr~~~~-------~ed~~~V~~L~~Ly~G~~~~~~~~~~pa~~~lq~kIL~~L~kS~~Aa----- 314 (501)
T PF13001_consen 247 ADSNSSVSDRAEDLLKRLSVS-------LEDPDLVDRLFDLYLGKGIPPENGRPPASPRLQEKILSLLSKSVIAA----- 314 (501)
T ss_pred eCCcchHHHHHHHHHhhcCCC-------CCCHHHHHHHHHHHHhcCCchhcCCCCCCHHHHHHHHHHHHHhHHHH-----
Confidence 345567888888888887763 112334555665554 2 25677776666665411100
Q ss_pred HHhcCChHHHHHHhccC--CHHHHHHHHHHH---HHhccC-CCC-c---hhhhhcCCcHHHHHHh---hhcccchHHHHH
Q 017249 147 IAASGAAPLLVQILHSG--SVQGRVDAVTAL---HYLSTC-KEN-S---SPILDATAVPPLINLL---KDCKKYSKFAEK 213 (375)
Q Consensus 147 i~~~~~l~~L~~lL~~~--~~~~~~~a~~~L---~~L~~~-~~~-~---~~i~~~g~i~~Lv~ll---~~~~~~~~~~~~ 213 (375)
......+..+..-|.+. +...+..++..+ ...... +.. . ...+..++.+.+ ..- .........+..
T Consensus 315 ~~~~~~~~i~~~~l~~~~~~~klk~~~l~F~~~~~~~~~~~~~~~l~~l~~~i~~~g~p~~-~~~~~~~~~~~~~~lR~~ 393 (501)
T PF13001_consen 315 TSFPNILQIVFDGLYSDNTNSKLKSLALQFIRGSSWIFKHISPQILKLLRPVILSQGWPLI-QDSSSQSNSSEDIELRSL 393 (501)
T ss_pred hCCccHHHHHhccccCCccccccchhcchhhhcchHHhhhcCHHHHHHHHHHHHhcCcccc-ccccccCCCcccHHHHHH
Confidence 01123344444445454 445555555555 222221 111 1 112234455544 110 111234467777
Q ss_pred HHHHHHHhhCChhhhHHHhhccCcHHHHHHHhccCChHHHHHHHHHHHHhcc
Q 017249 214 ATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQ 265 (375)
Q Consensus 214 a~~~L~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~ 265 (375)
+-.+|+.|+...... +..+-+.+..|+.-|.+..+.++...-.+|..++.
T Consensus 394 aYe~lG~L~~~~p~l--~~~d~~li~~LF~sL~~~~~evr~sIqeALssl~~ 443 (501)
T PF13001_consen 394 AYETLGLLAKRAPSL--FSKDLSLIEFLFDSLEDESPEVRVSIQEALSSLAP 443 (501)
T ss_pred HHHHHHHHHccCccc--ccccHHHHHHHHHHhhCcchHHHHHHHHHHHHHHH
Confidence 888899888643322 11234677888888877777777776666666654
No 365
>PF01417 ENTH: ENTH domain; InterPro: IPR001026 The ENTH (Epsin N-terminal homology) domain is approximately 150 amino acids in length and is always found located at the N-termini of proteins. The domain forms a compact globular structure, composed of 9 alpha-helices connected by loops of varying length. The general topology is determined by three helical hairpins that are stacked consecutively with a right hand twist []. An N-terminal helix folds back, forming a deep basic groove that forms the binding pocket for the Ins(1,4,5)P3 ligand []. The ligand is coordinated by residues from surrounding alpha-helices and all three phosphates are multiply coordinated. The coordination of Ins(1,4,5)P3 suggests that ENTH is specific for particular head groups. Proteins containing this domain have been found to bind PtdIns(4,5)P2 and PtdIns(1,4,5)P3 suggesting that the domain may be a membrane interacting module. The main function of proteins containing this domain appears to be to act as accessory clathrin adaptors in endocytosis, Epsin is able to recruit and promote clathrin polymerisation on a lipid monolayer, but may have additional roles in signalling and actin regulation []. Epsin causes a strong degree of membrane curvature and tubulation, even fragmentation of membranes with a high PtdIns(4,5)P2 content. Epsin binding to membranes facilitates their deformation by insertion of the N-terminal helix into the outer leaflet of the bilayer, pushing the head groups apart. This would reduce the energy needed to curve the membrane into a vesicle, making it easier for the clathrin cage to fix and stabilise the curved membrane. This points to a pioneering role for epsin in vesicle budding as it provides both a driving force and a link between membrane invagination and clathrin polymerisation. ; PDB: 1H0A_A 1EYH_A 1EDU_A 2QY7_B 1XGW_A 2V8S_E 1VDY_A 2DCP_A 1INZ_A 3ONL_B ....
Probab=29.33 E-value=1.9e+02 Score=22.27 Aligned_cols=90 Identities=17% Similarity=0.187 Sum_probs=57.1
Q ss_pred HHHHHHHhhCChhhhHHHhhccCcHHHHHHHh---ccCChHHHHHHHHHHHHhcccCcHHHHHHHHH-cCChHHHHHHhh
Q 017249 214 ATALLEILSSSEEGRIAITNSDGGILTLVETV---EDGSLVSTQHAVGALLSLCQSCRDKYRQLILK-EGAIPGLLRLTV 289 (375)
Q Consensus 214 a~~~L~~l~~~~~~~~~~~~~~g~v~~Lv~lL---~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~-~g~v~~L~~ll~ 289 (375)
.+.-|..++.+...... ++..|...| +..+....-.|+.+|..|..++.++....+.+ ...+..|..+-.
T Consensus 23 ~l~eIa~~t~~~~~~~~------I~~~l~kRL~~~~~k~wr~~~KaL~ll~yLl~nG~~~~~~~~~~~~~~I~~l~~f~~ 96 (125)
T PF01417_consen 23 LLAEIAQLTYNSKDCQE------IMDVLWKRLSKSDGKNWRHVYKALTLLEYLLKNGSERFVDELRDHIDIIRELQDFQY 96 (125)
T ss_dssp HHHHHHHHTTSCHHHHH------HHHHHHHHHHSSTSSGHHHHHHHHHHHHHHHHHS-HHHHHHHHHTHHHHHGGGG---
T ss_pred HHHHHHHHHhccccHHH------HHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHhhcceeec
Confidence 34445556655544333 445666666 44556778899999999999887777777654 356677765432
Q ss_pred --h-CC---HHHHHHHHHHHHHhhcC
Q 017249 290 --E-GT---FEAQERARTLLDLLRDT 309 (375)
Q Consensus 290 --~-~~---~~~~~~A~~~L~~l~~~ 309 (375)
. +. ..+|+.|..++..|...
T Consensus 97 ~d~~g~d~~~~VR~~A~~i~~lL~d~ 122 (125)
T PF01417_consen 97 VDPKGKDQGQNVREKAKEILELLNDD 122 (125)
T ss_dssp BBTTSTBHHHHHHHHHHHHHHHHTSH
T ss_pred cCCCCccHHHHHHHHHHHHHHHhCCc
Confidence 1 22 35999999999887653
No 366
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=29.22 E-value=3.6e+02 Score=26.63 Aligned_cols=151 Identities=17% Similarity=0.104 Sum_probs=86.0
Q ss_pred HhhHhHHHHHHHHhc--C---------CCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCCC--CHHHHHH
Q 017249 21 QRKQALIEELSDKLI--N---------GDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSP--NLDAIES 87 (375)
Q Consensus 21 ~~~~~~l~~Lv~~L~--s---------~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~~--~~~~~~~ 87 (375)
..+...+..|+.+.. . -++..|...+..|.+-.... -.-...+..+...|.+. +..++..
T Consensus 268 ~ed~~~V~~L~~Ly~G~~~~~~~~~~pa~~~lq~kIL~~L~kS~~Aa-------~~~~~~~~i~~~~l~~~~~~~klk~~ 340 (501)
T PF13001_consen 268 LEDPDLVDRLFDLYLGKGIPPENGRPPASPRLQEKILSLLSKSVIAA-------TSFPNILQIVFDGLYSDNTNSKLKSL 340 (501)
T ss_pred CCCHHHHHHHHHHHHhcCCchhcCCCCCCHHHHHHHHHHHHHhHHHH-------hCCccHHHHHhccccCCccccccchh
Confidence 446667777777665 2 35556655555554421111 00012344444455555 5667777
Q ss_pred HHHHH---HHhhccChhhHH----HHHHcCChHHHHH-----hhcCCChHHHHHHHHHHHHhhccCCChhHHHhcCChHH
Q 017249 88 SLLAL---LNLAVRNERNKV----KIATAGAIPPLVE-----LLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPL 155 (375)
Q Consensus 88 a~~~L---~~L~~~~~~~r~----~i~~~g~i~~Lv~-----lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~l~~ 155 (375)
++..+ ............ .++..++.|.+ + --.+.+...|..+..+|..|+...+.- ...+-+.+..
T Consensus 341 ~l~F~~~~~~~~~~~~~~~l~~l~~~i~~~g~p~~-~~~~~~~~~~~~~~lR~~aYe~lG~L~~~~p~l-~~~d~~li~~ 418 (501)
T PF13001_consen 341 ALQFIRGSSWIFKHISPQILKLLRPVILSQGWPLI-QDSSSQSNSSEDIELRSLAYETLGLLAKRAPSL-FSKDLSLIEF 418 (501)
T ss_pred cchhhhcchHHhhhcCHHHHHHHHHHHHhcCcccc-ccccccCCCcccHHHHHHHHHHHHHHHccCccc-ccccHHHHHH
Confidence 76666 444443333222 23334555555 2 112336778999999999998765421 1123567788
Q ss_pred HHHHhccCCHHHHHHHHHHHHHhcc
Q 017249 156 LVQILHSGSVQGRVDAVTALHYLST 180 (375)
Q Consensus 156 L~~lL~~~~~~~~~~a~~~L~~L~~ 180 (375)
|.+-|..+.++++...-.+|..|+.
T Consensus 419 LF~sL~~~~~evr~sIqeALssl~~ 443 (501)
T PF13001_consen 419 LFDSLEDESPEVRVSIQEALSSLAP 443 (501)
T ss_pred HHHHhhCcchHHHHHHHHHHHHHHH
Confidence 8888877788887777777777763
No 367
>PF04499 SAPS: SIT4 phosphatase-associated protein; InterPro: IPR007587 The SAPS family consists of proteins that associate with the SIT4 phosphatase protein []. This association is required for SIT4's role in G1 cyclin transcription and for bud formation in yeast.
Probab=28.37 E-value=4.5e+02 Score=25.83 Aligned_cols=76 Identities=16% Similarity=0.217 Sum_probs=50.3
Q ss_pred ccCcHHHHHHHhc-cCChHHHHHHHHHHHHhcccCc------------HHHHHHHHHcCChHHHHHHhhh-CCHHHHHHH
Q 017249 234 SDGGILTLVETVE-DGSLVSTQHAVGALLSLCQSCR------------DKYRQLILKEGAIPGLLRLTVE-GTFEAQERA 299 (375)
Q Consensus 234 ~~g~v~~Lv~lL~-~~~~~~~~~a~~~L~~l~~~~~------------~~~~~~l~~~g~v~~L~~ll~~-~~~~~~~~A 299 (375)
+.+.++.|+.+|. +.++..+..|+.+|..+..-+. ......+.+...+..|+..+-. .....--.+
T Consensus 60 ~q~LI~~Li~~L~p~~~~~~q~naa~~L~aII~is~n~~~~~~~~igpn~L~r~L~S~~~v~~Ll~~mL~~~~~s~lvn~ 139 (475)
T PF04499_consen 60 EQNLIPRLIDLLSPSYSSDVQSNAADFLKAIIRISRNAPQNEQSSIGPNPLTRQLVSEETVEKLLDIMLNSQGGSSLVNG 139 (475)
T ss_pred HhCHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhccccccccCCCccHHHHHHhChHHHHHHHHHHhcCCCcchHHHH
Confidence 6899999999997 3457788888888877644221 2455667778888888885542 334444555
Q ss_pred HH-HHHHhhcC
Q 017249 300 RT-LLDLLRDT 309 (375)
Q Consensus 300 ~~-~L~~l~~~ 309 (375)
+. ++..+.+.
T Consensus 140 v~IlieLIRkn 150 (475)
T PF04499_consen 140 VSILIELIRKN 150 (475)
T ss_pred HHHHHHHHHhc
Confidence 55 55555433
No 368
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=28.12 E-value=2.6e+02 Score=30.91 Aligned_cols=106 Identities=20% Similarity=0.147 Sum_probs=60.7
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHH-hhccChhhHH
Q 017249 26 LIEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIESSLLALLN-LAVRNERNKV 104 (375)
Q Consensus 26 ~l~~Lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~~~~~~~~~a~~~L~~-L~~~~~~~r~ 104 (375)
.++.+..++++....++..|++++..++... +++.+.. ++..++.++..-+.-++..+...+.. +.... .+.
T Consensus 817 ~l~~l~~~~~s~~~a~r~~~ar~i~~~~k~~---~~e~m~~--v~~~~~~ll~~~~~~~~r~~a~e~~~~l~~~l--~~~ 889 (1549)
T KOG0392|consen 817 LLPRLFFFVRSIHIAVRYAAARCIGTMFKSA---TRETMAT--VINGFLPLLGDLDKFVRRQGADELIELLDAVL--MVG 889 (1549)
T ss_pred hhhHHHHhcccchHHHHHHHHHHHHHHHHHH---HHHHHHH--HHHHHhhhccchhhHhhhhhHHHHHHHHHHhh--ccc
Confidence 3556667777889999999999999988776 3333321 23444445544333333333333322 22110 000
Q ss_pred HH-HHcCChHHHHHhhcCCChHHHHHHHHHHHHhh
Q 017249 105 KI-ATAGAIPPLVELLKFQNGTLRELAAAAILTLS 138 (375)
Q Consensus 105 ~i-~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls 138 (375)
.. +..=.+++|...+....+.+|..+..++..+.
T Consensus 890 l~~~~~Llv~pllr~msd~~d~vR~aat~~fa~li 924 (1549)
T KOG0392|consen 890 LVPYNPLLVVPLLRRMSDQIDSVREAATKVFAKLI 924 (1549)
T ss_pred ccccceeehhhhhcccccchHHHHHHHHHHHHHHh
Confidence 00 01123567777777778888888888887754
No 369
>cd00872 PI3Ka_I Phosphoinositide 3-kinase (PI3K) class I, accessory domain ; PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation. In general, PI3K class I prefer phosphoinositol (4,5)-bisphosphate as a substrate. Mammalian members interact with active Ras. They form heterodimers with adapter molecules linking them to different signaling pathways.
Probab=27.76 E-value=2.3e+02 Score=23.41 Aligned_cols=79 Identities=15% Similarity=0.142 Sum_probs=51.6
Q ss_pred hHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCC--CCHHHHHHHHHHHHHhhccCh
Q 017249 23 KQALIEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVS--PNLDAIESSLLALLNLAVRNE 100 (375)
Q Consensus 23 ~~~~l~~Lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~--~~~~~~~~a~~~L~~L~~~~~ 100 (375)
...+++.++....-.+++...++...|.....-+ ...-+++|+. .++.++..|+..|.+++. +
T Consensus 37 ~p~aL~~~l~sv~w~~~~~v~e~~~lL~~W~~i~-------------~~~aLeLL~~~f~d~~VR~yAV~~L~~~sd--~ 101 (171)
T cd00872 37 KPQALPKLLLSVKWNKRDDVAQMYQLLKRWPKLK-------------PEQALELLDCNFPDEHVREFAVRCLEKLSD--D 101 (171)
T ss_pred CcHHHHHHHhhCCCCCHHHHHHHHHHHHCCCCCC-------------HHHHHHHCCCcCCCHHHHHHHHHHHHhCCH--H
Confidence 3456677766666666766666666666554333 3445677765 368999999999999764 2
Q ss_pred hhHHHHHHcCChHHHHHhhcCC
Q 017249 101 RNKVKIATAGAIPPLVELLKFQ 122 (375)
Q Consensus 101 ~~r~~i~~~g~i~~Lv~lL~~~ 122 (375)
+. ...++.||+.|+..
T Consensus 102 eL------~~yL~QLVQaLKyE 117 (171)
T cd00872 102 EL------LQYLLQLVQVLKYE 117 (171)
T ss_pred HH------HHHHHHHHHHHHcc
Confidence 22 12366778888654
No 370
>KOG0803 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=26.91 E-value=8.7e+02 Score=27.38 Aligned_cols=108 Identities=19% Similarity=0.214 Sum_probs=65.7
Q ss_pred HhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChH---HH-HHhhCCCCHHHHHHHHHHHHHhhccC
Q 017249 24 QALIEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQ---PL-VLMLVSPNLDAIESSLLALLNLAVRN 99 (375)
Q Consensus 24 ~~~l~~Lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~---~L-v~~L~~~~~~~~~~a~~~L~~L~~~~ 99 (375)
..-+..+++.|...|+..|..|+..+.++.... . .-. . .|+++ .+ .++..+++..+|......+..+...
T Consensus 40 dsel~~I~kkL~KkD~~TK~KaL~eL~eli~~~-~-~e~-~--~~il~~w~~i~~kl~~d~~~~VR~~t~~v~s~l~t~- 113 (1312)
T KOG0803|consen 40 DSELDIIVKKLLKRDETTKIKALQELSELIDTS-D-TEE-L--KGILPEWLVIYAKLIIDEDRTVRLLTHDVFSKLLTK- 113 (1312)
T ss_pred CHHHHHHHHHHhccChHHHHHHHHhHHHhcccc-c-chH-H--hhhHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHH-
Confidence 344677888898999999999999999998766 2 111 1 12333 22 3455778899999999999888763
Q ss_pred hhhHHHHHH--cCChHHHHHhhcCCChHHHHHHHHHHHHhhc
Q 017249 100 ERNKVKIAT--AGAIPPLVELLKFQNGTLRELAAAAILTLSA 139 (375)
Q Consensus 100 ~~~r~~i~~--~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~ 139 (375)
.+..+.. ...+++.+---......+...|...+.....
T Consensus 114 --lkk~lsp~LK~li~~wl~~~~d~~~~vs~aa~~sf~~~f~ 153 (1312)
T KOG0803|consen 114 --LKKKLSPFLKSLIPPWLGGQFDLDYPVSEAAKASFKDGFA 153 (1312)
T ss_pred --HHHHhhHHHHhhhhhhhheecccchHHHHHHHHHHHhhcC
Confidence 3333222 1223332222223344555555555555444
No 371
>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6).; GO: 0051090 regulation of sequence-specific DNA binding transcription factor activity, 0005634 nucleus
Probab=26.43 E-value=1.7e+02 Score=21.21 Aligned_cols=56 Identities=16% Similarity=0.176 Sum_probs=38.3
Q ss_pred ChHHHHHHHHHHHHhhccCCChhHHHhcCChHHHHHHhccCC--HHHHHHHHHHHHHh
Q 017249 123 NGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHSGS--VQGRVDAVTALHYL 178 (375)
Q Consensus 123 ~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~l~~L~~lL~~~~--~~~~~~a~~~L~~L 178 (375)
+-.+|+.|+..|..++..-.....-.....+..+.+.+.+++ ...+..|+..|..|
T Consensus 19 h~~LRd~AA~lL~~I~~~~~~~~~~L~~Ri~~tl~k~l~d~~~~~~t~YGAi~gL~~l 76 (92)
T PF07571_consen 19 HWALRDFAASLLAQICRKFSSSYPTLQPRITRTLLKALLDPKKPLGTHYGAIVGLSAL 76 (92)
T ss_pred hHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHH
Confidence 457899999999998865332222233456677777777653 55688888888777
No 372
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=25.79 E-value=5.9e+02 Score=24.34 Aligned_cols=75 Identities=12% Similarity=0.148 Sum_probs=47.7
Q ss_pred HHcCChHHHHHhhcCCChHHHHHHHHHHHHhhccCCChhHHHhcCChHHHHHHhccC-CHHHHHHHHHHHHHhccC
Q 017249 107 ATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHSG-SVQGRVDAVTALHYLSTC 181 (375)
Q Consensus 107 ~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~l~~L~~lL~~~-~~~~~~~a~~~L~~L~~~ 181 (375)
+....+..|+.++.++++.-|.....+|.++...-.+...+........+.+.+... ........+..+..+..+
T Consensus 130 i~~~fi~~Ll~l~~S~D~rER~~lk~~l~~iy~k~~~~r~~Ir~~i~~~~~~fi~e~~~~~gI~elLeil~sii~g 205 (409)
T PF01603_consen 130 IDQKFIKKLLELFDSPDPRERDYLKTILHRIYGKFPNLRSFIRKSINNIFYRFIYETERHNGIAELLEILGSIING 205 (409)
T ss_dssp S-HHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHH-TTTHHHHHHHHHHHHHHHHHTTS--STHHHHHHHHHHHHTT
T ss_pred cCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCcccccCHHHHHHHHHHHHhc
Confidence 344557789999999999999999999999876544433333334445555555533 344566667777666543
No 373
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=25.49 E-value=1.8e+02 Score=21.55 Aligned_cols=69 Identities=14% Similarity=0.178 Sum_probs=42.3
Q ss_pred ChHHHHHHhhhCCHHHHHHHHHHHHHhhcCC--hhhhhhhhhHHHHHHHHhhcCCChHHHHHHHHHHHHHHH
Q 017249 280 AIPGLLRLTVEGTFEAQERARTLLDLLRDTP--QEKRLSSSVLEKIVYDIAARVDGADKAAETAKRLLQDMV 349 (375)
Q Consensus 280 ~v~~L~~ll~~~~~~~~~~A~~~L~~l~~~~--~~~~~~~g~~~~l~~~l~~~~~g~~~~~~~a~~~l~~l~ 349 (375)
++..++...-+.++..++....++..|+... ....+..|+.+ ++..+..-.-..|++.+...+++..++
T Consensus 37 vv~~~l~~~le~~~~~r~~~~~Ll~~L~~~~~~~~~~~~~gf~~-~l~~l~Dl~~D~P~~~~~la~~~~~~i 107 (113)
T PF02847_consen 37 VVKVILECALEEKKSYREYYSKLLSHLCKRKLISKEQFQEGFED-LLESLEDLELDIPKAPEYLAKFLARLI 107 (113)
T ss_dssp HHHHHHHHHHTSSHHHHHHHHHHHHHHHHTTSS-HHHHHHHHHH-HHHHHHHHHHHSTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHH-HHhHhhhccccchHHHHHHHHHHHHHH
Confidence 4566666666668999999999999998655 33556666554 333332111223556666666666555
No 374
>PF07539 DRIM: Down-regulated in metastasis; InterPro: IPR011430 These eukaryotic proteins include DRIM (Down-Regulated In Metastasis) (O75691 from SWISSPROT), which is differentially expressed in metastatic and non-metastatic human breast carcinoma cells []. It is believed to be involved in processing of non-coding RNA [].
Probab=25.44 E-value=1e+02 Score=24.60 Aligned_cols=37 Identities=19% Similarity=0.256 Sum_probs=28.4
Q ss_pred hHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhh
Q 017249 60 TRSEFAAAGVVQPLVLMLVSPNLDAIESSLLALLNLA 96 (375)
Q Consensus 60 ~~~~~~~~g~v~~Lv~~L~~~~~~~~~~a~~~L~~L~ 96 (375)
.+........-..+..+|.++++++|..|+.||...-
T Consensus 9 pk~l~~~~~l~~~~~~LL~~~d~~vQklAL~cll~~k 45 (141)
T PF07539_consen 9 PKSLYRSDELYDALLRLLSSRDPEVQKLALDCLLTWK 45 (141)
T ss_pred cHHHhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 3444444455667889999999999999999998754
No 375
>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6).; GO: 0051090 regulation of sequence-specific DNA binding transcription factor activity, 0005634 nucleus
Probab=25.33 E-value=1.8e+02 Score=21.10 Aligned_cols=58 Identities=24% Similarity=0.064 Sum_probs=35.2
Q ss_pred CHHHHHHHHHHHHHhccCCCCchhhhhcCCcHHHHHHhhhcccchHHHHHHHHHHHHh
Q 017249 164 SVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEIL 221 (375)
Q Consensus 164 ~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l 221 (375)
+-.++..|+.+|..++..-.....-+...++..+.+.+.++..+....--|+..|..|
T Consensus 19 h~~LRd~AA~lL~~I~~~~~~~~~~L~~Ri~~tl~k~l~d~~~~~~t~YGAi~gL~~l 76 (92)
T PF07571_consen 19 HWALRDFAASLLAQICRKFSSSYPTLQPRITRTLLKALLDPKKPLGTHYGAIVGLSAL 76 (92)
T ss_pred hHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHH
Confidence 4578999999999998653333222334566777777776654444444444444444
No 376
>PF00613 PI3Ka: Phosphoinositide 3-kinase family, accessory domain (PIK domain); InterPro: IPR001263 Phosphatidylinositol 3-kinase (PI3-kinase) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The role of the accessory domain of phosphoinositide 3-kinase (PI3-kinase) is unclear. It may be involved in substrate presentation [].; GO: 0004428 inositol or phosphatidylinositol kinase activity; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 2WXL_A 4AJW_B 2WXQ_A 2WXP_A 2WXM_A ....
Probab=24.40 E-value=2.2e+02 Score=23.79 Aligned_cols=77 Identities=16% Similarity=0.056 Sum_probs=40.8
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCCC--CHHHHHHHHHHHHHhhccChhh
Q 017249 25 ALIEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSP--NLDAIESSLLALLNLAVRNERN 102 (375)
Q Consensus 25 ~~l~~Lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~~--~~~~~~~a~~~L~~L~~~~~~~ 102 (375)
.+++.++..+.-.+++....+...|.....-+ ...-+++|+.. ++.++..|++.|..+..+ +.
T Consensus 45 ~aL~~~L~sv~w~~~~~~~~~~~ll~~W~~~~-------------p~~AL~LL~~~f~~~~VR~yAv~~L~~~~d~--~l 109 (184)
T PF00613_consen 45 EALPKLLRSVDWWNPEEVSEAYQLLLQWPPIS-------------PEDALELLSPNFPDPFVRQYAVRRLESLSDE--EL 109 (184)
T ss_dssp GGHHHHHTTSTTTSHHHHHHHHHHHHTSHCTT-------------HHHHHHCTSTT---HHHHHHHHHHHCTS-HH--HH
T ss_pred hHHHHHHhhCCCCchhhHHHHHHHHHcCCCCC-------------HHHHHHHHHhhccHHHHHHHHHHHHHHcCch--HH
Confidence 34555555444445555555555554433322 33346666653 577888888888775431 11
Q ss_pred HHHHHHcCChHHHHHhhcCC
Q 017249 103 KVKIATAGAIPPLVELLKFQ 122 (375)
Q Consensus 103 r~~i~~~g~i~~Lv~lL~~~ 122 (375)
- -.+|.||+.|+..
T Consensus 110 ~------~yLpQLVQaLr~e 123 (184)
T PF00613_consen 110 L------FYLPQLVQALRYE 123 (184)
T ss_dssp H------HHHHHHHHHGGGS
T ss_pred H------HHHHHHHHHheec
Confidence 1 1356777777654
No 377
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=23.89 E-value=6.1e+02 Score=23.84 Aligned_cols=216 Identities=16% Similarity=0.107 Sum_probs=114.4
Q ss_pred CHHHHHHHHHHHHHHHhhCChhhHHHHHhc--C-ChHHHHHhhCCC--CHHHHHHHHHHHHHhhccChhhHHHHHHcCCh
Q 017249 38 DLETKIEAARDIRKVVKKSSLKTRSEFAAA--G-VVQPLVLMLVSP--NLDAIESSLLALLNLAVRNERNKVKIATAGAI 112 (375)
Q Consensus 38 ~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~--g-~v~~Lv~~L~~~--~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i 112 (375)
+.....+|++++..+..+. +....+-+. . .++..+..+..+ +-.+....+++|..--. ...+.....+
T Consensus 59 ~~~L~~qALkll~~~l~~~--~i~~~l~~d~~~~~i~~~i~~l~~~~~~K~i~~~~l~~ls~Q~f-----~~~~~~~~~~ 131 (372)
T PF12231_consen 59 DSRLVIQALKLLGFFLYHP--EIVSTLSDDFASFIIDHSIESLQNPNSPKSICTHYLWCLSDQKF-----SPKIMTSDRV 131 (372)
T ss_pred chHHHHHHHHHHHHHHccH--HHHhhCChHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCC-----CCcccchhhH
Confidence 5566788999999888776 333333222 1 456667777544 34667777777775443 2234444455
Q ss_pred HHHHHhhc-----CCChHHHHHHHHHHHHhhccCCChhHHH-h-cCChHHHHHHhccCCHHHHHHHHHHHHHhcc--CC-
Q 017249 113 PPLVELLK-----FQNGTLRELAAAAILTLSAAAPNKPAIA-A-SGAAPLLVQILHSGSVQGRVDAVTALHYLST--CK- 182 (375)
Q Consensus 113 ~~Lv~lL~-----~~~~~~~~~a~~~L~~Ls~~~~~~~~i~-~-~~~l~~L~~lL~~~~~~~~~~a~~~L~~L~~--~~- 182 (375)
..++..+. -++..+....+.++.+|....+. .+. . .--++.++..+-+....++..|..++..+.. .+
T Consensus 132 ~~l~~~l~~i~~~~~s~si~~erL~i~~~ll~q~p~--~M~~~~~~W~~~l~~~l~~~~k~ir~~a~~l~~~~~~~l~~~ 209 (372)
T PF12231_consen 132 ERLLAALHNIKNRFPSKSIISERLNIYKRLLSQFPQ--QMIKHADIWFPILFPDLLSSAKDIRTKAISLLLEAKKCLGPN 209 (372)
T ss_pred HHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhChh
Confidence 55555542 23566777888888888764332 222 2 2356677776666666666666655544432 11
Q ss_pred -CCch---hhhhc----C-----CcHHHHHHhhhcccchHHHHHHHHHHHHhhCChh-hhHHHhhccCcHHHHHHHhccC
Q 017249 183 -ENSS---PILDA----T-----AVPPLINLLKDCKKYSKFAEKATALLEILSSSEE-GRIAITNSDGGILTLVETVEDG 248 (375)
Q Consensus 183 -~~~~---~i~~~----g-----~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~~~~-~~~~~~~~~g~v~~Lv~lL~~~ 248 (375)
.... ...+. + ..+.|..++.+......+......++ .|-..+. ..-... ...+...-..+.++
T Consensus 210 ~~~s~~~~~~~~~~~~~~~~~~~~~~~L~~mi~~~~~~~~a~~iW~~~i-~LL~~~~~~~w~~~--n~wL~v~e~cFn~~ 286 (372)
T PF12231_consen 210 KELSKSVLEDLQRSLENGKLIQLYCERLKEMIKSKDEYKLAMQIWSVVI-LLLGSSRLDSWEHL--NEWLKVPEKCFNSS 286 (372)
T ss_pred HHHHHHHHHHhccccccccHHHHHHHHHHHHHhCcCCcchHHHHHHHHH-HHhCCchhhccHhH--hHHHHHHHHHhcCC
Confidence 1111 11111 2 23335566665322323333222333 3333321 111111 12333344455678
Q ss_pred ChHHHHHHHHHHHHhcc
Q 017249 249 SLVSTQHAVGALLSLCQ 265 (375)
Q Consensus 249 ~~~~~~~a~~~L~~l~~ 265 (375)
++.++..|..+-..+..
T Consensus 287 d~~~k~~A~~aW~~liy 303 (372)
T PF12231_consen 287 DPQVKIQAFKAWRRLIY 303 (372)
T ss_pred CHHHHHHHHHHHHHHHH
Confidence 88899888888777655
No 378
>PF10954 DUF2755: Protein of unknown function (DUF2755); InterPro: IPR020513 This entry contains membrane proteins with no known function.; GO: 0016021 integral to membrane
Probab=23.03 E-value=99 Score=22.22 Aligned_cols=41 Identities=12% Similarity=0.232 Sum_probs=29.2
Q ss_pred HHHHHHHHHhcccCcHHHHHHHHH-cCChHHHHHHhhhCCHHHH
Q 017249 254 QHAVGALLSLCQSCRDKYRQLILK-EGAIPGLLRLTVEGTFEAQ 296 (375)
Q Consensus 254 ~~a~~~L~~l~~~~~~~~~~~l~~-~g~v~~L~~ll~~~~~~~~ 296 (375)
.+|+.+|..+-.+. +....++- .|+.+.|+++-+++.|++.
T Consensus 25 AYAlFVLfcfWaGa--QlLn~LvHAPGV~EhLmQ~Qds~RPrve 66 (100)
T PF10954_consen 25 AYALFVLFCFWAGA--QLLNMLVHAPGVYEHLMQVQDSGRPRVE 66 (100)
T ss_pred HHHHHHHHHHHhhH--HHHHHHHhCcHHHHHHHHHHhcCCCceE
Confidence 46666666665543 66666665 7899999998888877654
No 379
>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning]
Probab=22.96 E-value=4.2e+02 Score=28.77 Aligned_cols=132 Identities=17% Similarity=0.148 Sum_probs=87.3
Q ss_pred CCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhccChhhHHHH--HHcCChH
Q 017249 36 NGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIESSLLALLNLAVRNERNKVKI--ATAGAIP 113 (375)
Q Consensus 36 s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~~~~~~~~~a~~~L~~L~~~~~~~r~~i--~~~g~i~ 113 (375)
+-+++++..++..|...+..- | ..|.+.-.++.+=..|++.+.+||..++.+|..|... .+....+ .-...=.
T Consensus 298 DV~~~IRaiCiqeLgiWi~~y-P---~~Fl~dsYLKYiGWtLsDk~~~VRl~~lkaL~~L~e~-~~~~~~L~lFtsRFK~ 372 (1048)
T KOG2011|consen 298 DVDPDIRAICIQELGIWIKSY-P---EIFLSDSYLKYIGWTLSDKNGTVRLRCLKALIKLYEK-DEDKDKLELFTSRFKD 372 (1048)
T ss_pred cCchHHHHHHHHHHHHHHHhc-c---HHHhcchHHHHhcceeecCccHHHHHHHHHHHHHHhc-cccchHHHHHHHHHHH
Confidence 457888988988888888766 3 3466666788888889999999999999999999874 2222222 2233445
Q ss_pred HHHHhh-cCCChHHHHHHHHHHHHhhccCCChhHHHhcCChHHHHHHhccCCHHHHHHHHHHHHH
Q 017249 114 PLVELL-KFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHY 177 (375)
Q Consensus 114 ~Lv~lL-~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~~ 177 (375)
.++++. ...+..++...+..+..+.... +....-+..+.+++.+.++.+...|...++.
T Consensus 373 RIVeMadrd~~~~Vrav~L~~~~~~~~~g-----~L~d~di~~Vy~Li~d~~r~~~~aa~~fl~~ 432 (1048)
T KOG2011|consen 373 RIVEMADRDRNVSVRAVGLVLCLLLSSSG-----LLSDKDILIVYSLIYDSNRRVAVAAGEFLYK 432 (1048)
T ss_pred HHHHHHhhhcchhHHHHHHHHHHHHhccc-----ccChhHHHHHHHHHhccCcchHHHHHHHHHH
Confidence 667776 3346666665555444432211 1223345677888888888877777666654
No 380
>PF08454 RIH_assoc: RyR and IP3R Homology associated; InterPro: IPR013662 This eukaryotic domain is found in ryanodine receptors (RyR) and inositol 1, 4, 5-trisphosphate receptors (IP3R) which together form a superfamily of homotetrameric ligand-gated intracellular Ca2+ channels []. There seems to be no known function for this domain []. Also see the IP3-binding domain IPR000699 from INTERPRO and IPR003608 from INTERPRO.
Probab=22.95 E-value=2.2e+02 Score=21.48 Aligned_cols=45 Identities=9% Similarity=0.194 Sum_probs=35.2
Q ss_pred cCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCC
Q 017249 35 INGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVS 79 (375)
Q Consensus 35 ~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~ 79 (375)
...+.+.-..++.+|..++.++-.+++..+.+..+++.+..+|..
T Consensus 63 ~~~~~~~~~q~~~tL~E~iQGPC~eNQ~~l~~s~~~~~i~~lL~~ 107 (109)
T PF08454_consen 63 NSDNIELIIQCFDTLTEFIQGPCIENQIALANSKFLDIINDLLSK 107 (109)
T ss_pred hHHHHHHHHHHHHHHHHHHcCCCHHhHHHHHHccHHHHHHHHHhh
Confidence 345566777888899999998437888888888888888887754
No 381
>PF14666 RICTOR_M: Rapamycin-insensitive companion of mTOR, middle domain
Probab=21.39 E-value=5.5e+02 Score=22.33 Aligned_cols=130 Identities=15% Similarity=0.105 Sum_probs=84.6
Q ss_pred hHHHHHHHHHHHHhhCChhhhHHHhhccCcHHHHHHHhccC---------C---------hHHHHHHHHHHHHhcccCcH
Q 017249 208 SKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDG---------S---------LVSTQHAVGALLSLCQSCRD 269 (375)
Q Consensus 208 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~---------~---------~~~~~~a~~~L~~l~~~~~~ 269 (375)
......++..+..|..++++.+.+. +.+.++.+.+.|..- + ..+...=...|+.++...
T Consensus 78 ~~y~~vGc~L~~~Ll~~~eG~~~l~-~~~ll~qia~~L~~~d~~~g~~~~~~lfs~~~l~~tl~~~Yf~~IG~lS~~~-- 154 (226)
T PF14666_consen 78 QKYVRVGCQLLETLLSSPEGIKYLS-ESKLLPQIAECLAQVDPMSGITAHDPLFSPQRLSTTLSRGYFLFIGVLSSTP-- 154 (226)
T ss_pred hHHHHHHHHHHHHHHcCcHHHHHHH-HccHHHHHHHHHHHHhhhcCCcccccccCHHHHHhhHHHHHHHHHHHHhCCh--
Confidence 3455668888999999999888888 688998888777421 0 112222344566777664
Q ss_pred HHHHHHHHcCChHHHHHHhhhCCHHHHHHHHHHHHHhhcCChhhhhhhhhHHHHHHHHhhcCCChHHHHHHHHHHHHHHH
Q 017249 270 KYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDTPQEKRLSSSVLEKIVYDIAARVDGADKAAETAKRLLQDMV 349 (375)
Q Consensus 270 ~~~~~l~~~g~v~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~~~~~~~g~~~~l~~~l~~~~~g~~~~~~~a~~~l~~l~ 349 (375)
.+.+.+-+.++...+..+....+. ......+|.++--.. .|-...++.... ..|+...+-.|.+.|..+.
T Consensus 155 ~Gl~lLe~~~if~~l~~i~~~~~~--~~l~klil~~LDY~~------~~~~R~iLsKaL--t~~s~~iRl~aT~~L~~ll 224 (226)
T PF14666_consen 155 NGLKLLERWNIFTMLYHIFSLSSR--DDLLKLILSSLDYSV------DGHPRIILSKAL--TSGSESIRLYATKHLRVLL 224 (226)
T ss_pred hHHHHHHHCCHHHHHHHHHccCch--HHHHHHHHhhCCCCC------ccHHHHHHHHHH--hcCCHHHHHHHHHHHHHHh
Confidence 667888889999999999886533 222333666663222 223333433322 4677889999998888775
Q ss_pred H
Q 017249 350 Q 350 (375)
Q Consensus 350 ~ 350 (375)
+
T Consensus 225 r 225 (226)
T PF14666_consen 225 R 225 (226)
T ss_pred c
Confidence 4
No 382
>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 439 to 459 amino acids in length. This domain is found associated with PF00271 from PFAM, PF02985 from PFAM, and PF00176 from PFAM. This domain has two completely conserved residues (P and K) that may be functionally important.
Probab=20.84 E-value=7.8e+02 Score=23.89 Aligned_cols=115 Identities=16% Similarity=0.082 Sum_probs=62.6
Q ss_pred HHHHHHHHHHHHhcccCcHHHHHHHHHcCChHHHHHHhhhCCHHHHHHHHHHHHHhhcCChhhhhh---hhhHHHHHHHH
Q 017249 251 VSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDTPQEKRLS---SSVLEKIVYDI 327 (375)
Q Consensus 251 ~~~~~a~~~L~~l~~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~~~~~~---~g~~~~l~~~l 327 (375)
..|-.|+.+|+.++..-.......+.+. .|+.++.+.+..-|.-|+-++...+......... ..+.+.|...|
T Consensus 102 r~Ri~aA~ALG~l~~~~~~~~~~~~~~~----~L~~~L~S~sa~qR~~aalvl~ewa~~~~~~~~~~~~~~l~~~L~~~L 177 (441)
T PF12054_consen 102 RARIAAAKALGLLLSYWPESSLQEIFQP----LLLPYLNSPSATQRLLAALVLEEWAKACKERNPSPPPQALSPRLLEIL 177 (441)
T ss_pred HHHHHHHHHHHHHHHhcccchHHHHHHH----HHHHHhcchhHHHHHHHHHHHHHHHHhCccccCCccHHHHHHHHHHHH
Confidence 3456677777777654211212222222 6788888888888888888888777666432111 34555565555
Q ss_pred hhcCCChHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhcCCCCCCC
Q 017249 328 AARVDGADKAAETAKRLLQDMVQRSMELSMTRIQQRAASSAPSKIPS 374 (375)
Q Consensus 328 ~~~~~g~~~~~~~a~~~l~~l~~~s~~~~~~~~~~~~~~~~~~~~~~ 374 (375)
. +..+--.+.....++.++ +.+...-...+...--.+++||+
T Consensus 178 ~---~~~~~~Y~El~~~l~~lr--~ec~~Ll~~f~~~g~~~~~klp~ 219 (441)
T PF12054_consen 178 E---NPEPPYYDELVPSLKRLR--TECQQLLATFRDVGKVPPSKLPS 219 (441)
T ss_pred c---CCCCCCHHHHHHHHHHHH--HHHHHHHHHHHHhCCCChhhccc
Confidence 4 223444455555555555 44444444444444433555553
No 383
>smart00544 MA3 Domain in DAP-5, eIF4G, MA-3 and other proteins. Highly alpha-helical. May contain repeats and/or regions similar to MIF4G domains Ponting (TIBS) "Novel eIF4G domain homologues" in press
Probab=20.69 E-value=3.6e+02 Score=19.97 Aligned_cols=97 Identities=19% Similarity=0.177 Sum_probs=53.0
Q ss_pred HHHHhccCChHHHHHHHHHHHHhcccCcHHHHHHHHHcCChHHHHHHhhhCCHHHHHHHHHHHHHhhcCCh--hhhhhhh
Q 017249 241 LVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDTPQ--EKRLSSS 318 (375)
Q Consensus 241 Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~--~~~~~~g 318 (375)
+-+++.+++. ..|+..+..+-... ....++..++...-+.+..-++....+|..|+.... ...+..|
T Consensus 9 l~ey~~~~D~---~ea~~~l~~L~~~~--------~~~~vv~~~i~~~le~~~~~~~~~~~Ll~~L~~~~~~~~~~~~~~ 77 (113)
T smart00544 9 IEEYLSSGDT---DEAVHCLLELKLPE--------QHHEVVKVLLTCALEEKRTYREMYSVLLSRLCQANVISTKQFEKG 77 (113)
T ss_pred HHHHHHcCCH---HHHHHHHHHhCCCc--------chHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHcCCcCHHHHHHH
Confidence 3344444432 46666666664321 122355666665555567889999999999986552 2455555
Q ss_pred hHHHHHHHHhhcCCChHHHHHHHHHHHHHHH
Q 017249 319 VLEKIVYDIAARVDGADKAAETAKRLLQDMV 349 (375)
Q Consensus 319 ~~~~l~~~l~~~~~g~~~~~~~a~~~l~~l~ 349 (375)
+.+ ++..+..-.-..|.+.....+++..++
T Consensus 78 f~~-~~~~l~dl~~D~P~a~~~la~~~a~~v 107 (113)
T smart00544 78 FWR-LLEDIEDLELDIPNAWRNLAEFVARLI 107 (113)
T ss_pred HHH-HHhhChhhhcccccHHHHHHHHHHHHH
Confidence 544 333333222223555555555555554
No 384
>KOG2374 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.29 E-value=4.8e+02 Score=25.57 Aligned_cols=87 Identities=17% Similarity=0.171 Sum_probs=61.9
Q ss_pred hHHHHHHHHhc-CCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhccChhhH
Q 017249 25 ALIEELSDKLI-NGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIESSLLALLNLAVRNERNK 103 (375)
Q Consensus 25 ~~l~~Lv~~L~-s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~~~~~~~~~a~~~L~~L~~~~~~~r 103 (375)
+-+..||+.|. |+.++.--.-++.|..++... ++... .....|+.++...+..++..++.++-.|...++..|
T Consensus 6 ~kl~~lIeelT~sg~~~~~p~~~k~lkkiv~~s-dee~~-----~~~~~L~~~~~~~h~~vR~l~lqii~elF~rs~~FR 79 (661)
T KOG2374|consen 6 GKLIGLIEELTKSGAQEVDPRLLKALKKIVRYS-DEEVR-----LSSQTLMELMRHNHSQVRYLTLQIIDELFMRSKLFR 79 (661)
T ss_pred hHHHHHHHHHhhcCCcccChHHHHHHHHHHhcc-HHHHH-----HHHHHHHHHHhhcCchHHHHHHHHHHHHHHhhHHHH
Confidence 45667777775 666665555566677777666 33322 237889999999999999999999999998888888
Q ss_pred HHHHHcCChHHHHHhh
Q 017249 104 VKIATAGAIPPLVELL 119 (375)
Q Consensus 104 ~~i~~~g~i~~Lv~lL 119 (375)
..+++. +.-++++.
T Consensus 80 ~lii~n--~~efLeL~ 93 (661)
T KOG2374|consen 80 TLIIEN--LDEFLELS 93 (661)
T ss_pred HHHHhC--HHHHHHHh
Confidence 888764 44455543
No 385
>cd00870 PI3Ka_III Phosphoinositide 3-kinase (PI3K) class III, accessory domain (PIK domain); PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation. In general, PI3Ks class III phosphorylate phosphoinositol (PtdIns) only. The prototypical PI3K class III, yeast Vps34, is involved in trafficking proteins from Golgi to the vacuole.
Probab=20.27 E-value=3.7e+02 Score=22.07 Aligned_cols=76 Identities=16% Similarity=0.060 Sum_probs=42.9
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCCC--CHHHHHHHHHHHHHhhccChhhH
Q 017249 26 LIEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSP--NLDAIESSLLALLNLAVRNERNK 103 (375)
Q Consensus 26 ~l~~Lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~~--~~~~~~~a~~~L~~L~~~~~~~r 103 (375)
+++.++....=.+++...++...|.....-+ ....+++|+.. +..++..|+..|.+++. ++..
T Consensus 47 aL~~~L~sv~W~~~~e~~e~~~lL~~W~~i~-------------~~~aLeLL~~~f~~~~VR~yAV~~L~~~sd--~eL~ 111 (166)
T cd00870 47 ALTKFLKSVNWSDEQEVKQALELMPKWAKID-------------IEDALELLSPYFTNPVVRKYAVSRLKLASD--EELL 111 (166)
T ss_pred HHHHHhhhCCCCCHHHHHHHHHHHhcCCCCC-------------HHHHHHHcCccCCCHHHHHHHHHHHHhCCH--HHHH
Confidence 4444444443344444445555444433222 44456677653 68899999999998664 2221
Q ss_pred HHHHHcCChHHHHHhhcCC
Q 017249 104 VKIATAGAIPPLVELLKFQ 122 (375)
Q Consensus 104 ~~i~~~g~i~~Lv~lL~~~ 122 (375)
..++.||+.|+..
T Consensus 112 ------~yL~QLVQaLKyE 124 (166)
T cd00870 112 ------LYLLQLVQALKYE 124 (166)
T ss_pred ------HHHHHHHHHHHhc
Confidence 2356777777654
No 386
>PF08620 RPAP1_C: RPAP1-like, C-terminal; InterPro: IPR013929 Inhibition of RNA polymerase II-associated protein 1 (RPAP1) synthesis in Saccharomyces cerevisiae (Baker's yeast) results in changes in global gene expression that are similar to those caused by the loss of the RNAPII subunit Rpb11 []. This entry represents the C-terminal region that contains the motif GLHHH. This region is conserved from yeast to humans.
Probab=20.03 E-value=2.1e+02 Score=19.89 Aligned_cols=30 Identities=13% Similarity=0.123 Sum_probs=26.7
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhh
Q 017249 26 LIEELSDKLINGDLETKIEAARDIRKVVKK 55 (375)
Q Consensus 26 ~l~~Lv~~L~s~~~~~~~~a~~~l~~l~~~ 55 (375)
.++.|+.+.+|..+..+..|+.+|.++...
T Consensus 40 Ti~El~~L~RSsv~~QR~~al~~L~~Il~~ 69 (73)
T PF08620_consen 40 TIQELFHLSRSSVPSQRCIALQTLGRILYR 69 (73)
T ss_pred CHHHHHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence 488999999999999999999999998764
Done!