Query 017249
Match_columns 375
No_of_seqs 235 out of 2013
Neff 9.8
Searched_HMMs 29240
Date Mon Mar 25 11:23:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017249.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017249hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3nmz_A APC variant protein; pr 100.0 5.5E-37 1.9E-41 291.8 25.6 331 14-351 59-451 (458)
2 3ul1_B Importin subunit alpha- 100.0 7E-36 2.4E-40 291.7 33.3 326 19-352 94-432 (510)
3 3tpo_A Importin subunit alpha- 100.0 3.1E-35 1.1E-39 288.4 35.4 326 19-352 113-451 (529)
4 3ul1_B Importin subunit alpha- 100.0 2.1E-35 7.1E-40 288.3 33.3 331 26-362 58-399 (510)
5 3now_A UNC-45 protein, SD10334 100.0 7.1E-36 2.4E-40 299.4 29.2 337 11-352 406-784 (810)
6 3l6x_A Catenin delta-1; cateni 100.0 1.8E-35 6.3E-40 287.4 29.4 336 23-362 46-443 (584)
7 1xm9_A Plakophilin 1; armadill 100.0 1.9E-35 6.5E-40 284.5 29.2 323 26-351 3-407 (457)
8 3nmw_A APC variant protein; AR 100.0 1.4E-35 4.9E-40 274.3 21.8 279 39-321 46-347 (354)
9 3tpo_A Importin subunit alpha- 100.0 1.3E-33 4.5E-38 276.9 34.9 332 25-362 76-418 (529)
10 4b8j_A Importin subunit alpha- 100.0 6.6E-33 2.3E-37 272.0 37.3 328 18-353 110-446 (528)
11 1xm9_A Plakophilin 1; armadill 100.0 6.6E-34 2.2E-38 273.8 28.5 327 13-349 32-448 (457)
12 3l6x_A Catenin delta-1; cateni 100.0 1.9E-33 6.6E-38 273.2 30.3 340 13-363 78-486 (584)
13 4b8j_A Importin subunit alpha- 100.0 1.3E-32 4.3E-37 270.0 35.8 323 23-351 72-401 (528)
14 3nmz_A APC variant protein; pr 100.0 3.2E-34 1.1E-38 272.9 21.1 265 44-312 167-454 (458)
15 1wa5_B Importin alpha subunit; 100.0 9.4E-32 3.2E-36 264.0 36.8 327 19-353 124-460 (530)
16 3now_A UNC-45 protein, SD10334 100.0 3.5E-33 1.2E-37 280.0 24.8 319 25-352 377-739 (810)
17 1wa5_B Importin alpha subunit; 100.0 2.1E-31 7.3E-36 261.4 35.6 323 23-352 85-414 (530)
18 2jdq_A Importin alpha-1 subuni 100.0 4.2E-31 1.4E-35 253.5 36.9 320 25-353 64-393 (450)
19 3nmw_A APC variant protein; AR 100.0 3.6E-32 1.2E-36 251.5 20.3 265 82-352 46-336 (354)
20 2jdq_A Importin alpha-1 subuni 100.0 1.3E-29 4.6E-34 243.1 35.2 318 26-351 21-348 (450)
21 1jdh_A Beta-catenin; beta-cate 100.0 1E-29 3.5E-34 249.0 29.8 320 14-342 90-418 (529)
22 1jdh_A Beta-catenin; beta-cate 100.0 2.5E-29 8.7E-34 246.2 28.9 323 17-349 50-384 (529)
23 2z6h_A Catenin beta-1, beta-ca 100.0 2E-28 6.9E-33 245.7 32.8 330 15-350 88-445 (644)
24 2z6h_A Catenin beta-1, beta-ca 100.0 4.4E-29 1.5E-33 250.5 25.9 319 22-350 11-336 (644)
25 4hxt_A De novo protein OR329; 100.0 6.9E-29 2.4E-33 219.4 22.8 240 68-311 2-244 (252)
26 2z6g_A B-catenin; FULL-length, 100.0 1.2E-27 4.1E-32 244.2 32.0 328 15-349 224-621 (780)
27 4hxt_A De novo protein OR329; 100.0 3.2E-28 1.1E-32 215.1 24.0 240 25-268 2-244 (252)
28 4db8_A Armadillo-repeat protei 100.0 1.2E-28 4.1E-33 218.4 21.1 238 24-265 11-251 (252)
29 4db8_A Armadillo-repeat protei 100.0 2.1E-28 7.1E-33 216.8 19.5 238 68-309 12-252 (252)
30 2z6g_A B-catenin; FULL-length, 100.0 3.5E-27 1.2E-31 240.8 28.8 322 18-349 184-517 (780)
31 3tt9_A Plakophilin-2; cell adh 99.9 5.7E-26 1.9E-30 196.3 16.9 198 25-224 8-230 (233)
32 3tt9_A Plakophilin-2; cell adh 99.9 6.4E-26 2.2E-30 196.0 14.3 197 69-266 9-230 (233)
33 3opb_A SWI5-dependent HO expre 99.9 3E-24 1E-28 211.7 24.7 322 24-350 333-728 (778)
34 4db6_A Armadillo repeat protei 99.9 2.1E-24 7.3E-29 185.6 19.9 201 20-223 7-209 (210)
35 3opb_A SWI5-dependent HO expre 99.9 6E-24 2E-28 209.6 24.1 320 10-333 360-762 (778)
36 4db6_A Armadillo repeat protei 99.9 6.3E-24 2.1E-28 182.7 19.2 198 65-265 9-209 (210)
37 1xqr_A HSPBP1 protein; armadil 99.9 7.9E-22 2.7E-26 177.6 20.7 239 23-265 26-287 (296)
38 1xqr_A HSPBP1 protein; armadil 99.9 2.3E-21 7.8E-26 174.6 18.7 222 124-349 54-286 (296)
39 3grl_A General vesicular trans 99.7 1.8E-15 6.3E-20 145.8 26.3 326 22-355 18-399 (651)
40 3grl_A General vesicular trans 99.7 5.1E-14 1.7E-18 135.9 26.5 287 23-311 58-397 (651)
41 1oyz_A Hypothetical protein YI 99.6 5E-14 1.7E-18 126.2 22.0 264 15-345 13-277 (280)
42 4fdd_A Transportin-1; heat rep 99.6 6.2E-14 2.1E-18 144.9 18.1 312 25-351 128-472 (852)
43 1b3u_A Protein (protein phosph 99.5 1.7E-12 5.9E-17 128.0 23.4 307 24-349 280-586 (588)
44 3ltm_A Alpha-REP4; protein eng 99.5 1.3E-12 4.4E-17 111.8 18.5 188 67-310 18-205 (211)
45 4fdd_A Transportin-1; heat rep 99.5 4E-13 1.4E-17 138.8 16.8 313 24-349 173-511 (852)
46 3ltm_A Alpha-REP4; protein eng 99.5 2.7E-12 9.2E-17 109.8 18.7 190 22-267 16-205 (211)
47 1b3u_A Protein (protein phosph 99.5 3E-12 1E-16 126.3 21.5 307 24-351 163-471 (588)
48 1oyz_A Hypothetical protein YI 99.5 3.3E-12 1.1E-16 114.3 19.8 229 65-349 20-249 (280)
49 3ltj_A Alpharep-4; protein eng 99.5 5.8E-12 2E-16 106.9 19.6 187 22-264 11-197 (201)
50 3ltj_A Alpharep-4; protein eng 99.5 2.8E-12 9.6E-17 108.8 17.5 185 68-308 14-198 (201)
51 1ibr_B P95, importin beta-1 su 99.4 3.7E-12 1.3E-16 121.8 16.5 297 24-327 127-456 (462)
52 1qgr_A Protein (importin beta 99.4 1.1E-10 3.7E-15 120.7 24.1 317 24-352 127-481 (876)
53 2vgl_B AP-2 complex subunit be 99.3 9.3E-11 3.2E-15 116.1 22.3 221 26-267 122-384 (591)
54 2vgl_B AP-2 complex subunit be 99.3 5.7E-11 1.9E-15 117.6 20.5 265 70-351 123-420 (591)
55 2bpt_A Importin beta-1 subunit 99.2 8.7E-10 3E-14 113.6 23.5 318 26-351 370-712 (861)
56 2bpt_A Importin beta-1 subunit 99.2 3.6E-09 1.2E-13 109.0 26.9 316 25-351 134-483 (861)
57 4gmo_A Putative uncharacterize 99.2 3.4E-11 1.2E-15 121.0 11.4 196 23-222 32-257 (684)
58 1ibr_B P95, importin beta-1 su 99.2 5.6E-10 1.9E-14 106.5 18.9 310 27-352 92-439 (462)
59 1qgr_A Protein (importin beta 99.2 7.5E-10 2.6E-14 114.3 19.8 316 24-350 171-537 (876)
60 4gmo_A Putative uncharacterize 99.1 2.9E-10 1E-14 114.2 13.6 195 68-264 34-257 (684)
61 1w63_A Adapter-related protein 99.1 4.7E-09 1.6E-13 104.3 20.5 287 26-349 108-413 (618)
62 1w63_A Adapter-related protein 99.1 1.8E-08 6E-13 100.2 22.1 289 26-350 71-379 (618)
63 1u6g_C TIP120 protein, CAND1; 99.0 8.1E-09 2.8E-13 110.7 19.0 308 25-350 48-403 (1230)
64 1u6g_C TIP120 protein, CAND1; 99.0 2.2E-09 7.4E-14 115.2 13.3 274 25-312 6-288 (1230)
65 3b2a_A TON_1937, putative unch 98.9 1.4E-07 4.9E-12 79.0 18.6 190 23-225 31-220 (265)
66 2vgl_A Adaptor protein complex 98.9 2.4E-07 8.2E-12 91.9 23.0 292 26-349 75-397 (621)
67 2vgl_A Adaptor protein complex 98.7 1.3E-06 4.3E-11 86.7 20.3 271 27-328 113-414 (621)
68 1ho8_A Vacuolar ATP synthase s 98.7 1.7E-06 5.9E-11 80.9 19.3 279 24-307 76-475 (480)
69 3b2a_A TON_1937, putative unch 98.6 1.2E-06 4E-11 73.6 15.5 223 68-305 33-258 (265)
70 1te4_A Conserved protein MTH18 98.6 4.8E-09 1.7E-13 82.4 -1.2 123 22-178 9-131 (131)
71 2qk2_A LP04448P; mini spindles 98.5 3.6E-07 1.2E-11 79.5 10.4 183 28-223 18-205 (242)
72 3tjz_B Coatomer subunit gamma; 98.5 1.9E-06 6.4E-11 78.7 15.3 250 26-312 69-320 (355)
73 2qk2_A LP04448P; mini spindles 98.5 4E-07 1.4E-11 79.2 9.7 185 113-310 18-207 (242)
74 2iw3_A Elongation factor 3A; a 98.4 3.8E-06 1.3E-10 86.1 16.2 303 26-351 15-325 (986)
75 4ady_A RPN2, 26S proteasome re 98.3 0.00023 7.8E-09 72.4 24.8 256 26-328 430-698 (963)
76 2db0_A 253AA long hypothetical 98.3 0.0005 1.7E-08 55.5 21.7 217 22-266 29-247 (253)
77 2qk1_A Protein STU2; STU2P, XM 98.3 5E-06 1.7E-10 72.6 11.1 191 115-310 21-222 (249)
78 2qk1_A Protein STU2; STU2P, XM 98.3 1.5E-06 5.2E-11 75.9 7.6 190 29-222 20-219 (249)
79 3dad_A FH1/FH2 domain-containi 98.2 4.2E-05 1.4E-09 68.2 16.1 154 25-180 118-286 (339)
80 2db0_A 253AA long hypothetical 98.2 0.00014 4.9E-09 58.6 16.7 213 68-307 32-245 (253)
81 1te4_A Conserved protein MTH18 98.2 3.3E-07 1.1E-11 71.7 1.2 121 109-263 11-131 (131)
82 4ady_A RPN2, 26S proteasome re 98.2 0.00069 2.4E-08 68.9 25.0 269 25-348 392-674 (963)
83 2iw3_A Elongation factor 3A; a 98.0 0.00019 6.4E-09 73.7 18.2 266 25-307 54-323 (986)
84 3tjz_B Coatomer subunit gamma; 98.0 4E-05 1.4E-09 69.9 11.7 241 26-303 105-348 (355)
85 3dad_A FH1/FH2 domain-containi 98.0 0.00011 3.9E-09 65.4 13.5 152 154-308 121-286 (339)
86 1ho8_A Vacuolar ATP synthase s 97.7 0.00041 1.4E-08 65.0 13.4 231 30-265 172-476 (480)
87 2fv2_A RCD1 required for cell 97.3 0.0064 2.2E-07 51.9 13.7 221 83-307 16-267 (268)
88 2fv2_A RCD1 required for cell 97.3 0.0087 3E-07 51.0 14.4 99 211-310 73-176 (268)
89 1wa5_C Importin alpha RE-expor 97.3 0.0059 2E-07 63.6 16.3 315 24-350 122-525 (960)
90 1wa5_C Importin alpha RE-expor 97.2 0.061 2.1E-06 56.0 23.5 253 40-307 376-669 (960)
91 4ffb_C Protein STU2; tubulin f 97.2 0.02 6.8E-07 50.3 16.5 187 30-223 14-212 (278)
92 3oc3_A Helicase MOT1, MOT1; re 97.2 0.0033 1.1E-07 59.7 11.5 239 26-304 175-432 (800)
93 2x19_B Importin-13; nuclear tr 97.0 0.094 3.2E-06 54.4 22.3 220 26-266 25-269 (963)
94 2of3_A ZYG-9; multifunctional 96.9 0.024 8.3E-07 49.2 14.3 179 26-222 47-235 (266)
95 2x1g_F Cadmus; transport prote 96.7 0.17 5.7E-06 52.7 21.5 253 40-309 311-616 (971)
96 1lrv_A LRV, leucine-rich repea 96.7 0.0021 7E-08 55.5 5.4 179 33-303 58-241 (244)
97 2x1g_F Cadmus; transport prote 96.6 0.11 3.7E-06 54.1 19.5 294 37-351 518-859 (971)
98 3oc3_A Helicase MOT1, MOT1; re 96.5 0.02 6.7E-07 54.5 11.2 244 69-346 175-432 (800)
99 2of3_A ZYG-9; multifunctional 96.5 0.033 1.1E-06 48.4 11.9 182 113-310 49-238 (266)
100 1upk_A MO25 protein; transfera 96.4 0.16 5.5E-06 45.2 15.8 222 64-289 74-311 (341)
101 3u0r_A Apoptosis inhibitor 5; 96.4 0.51 1.7E-05 44.1 19.5 130 27-177 31-160 (507)
102 4ffb_C Protein STU2; tubulin f 96.4 0.11 3.9E-06 45.4 15.0 188 70-267 12-214 (278)
103 2x19_B Importin-13; nuclear tr 96.3 0.7 2.4E-05 47.9 23.3 138 161-310 459-601 (963)
104 4hat_C Exportin-1; heat repeat 95.7 0.21 7.3E-06 52.1 15.4 141 37-182 465-620 (1023)
105 3ebb_A Phospholipase A2-activa 95.6 0.29 9.8E-06 43.4 13.9 139 73-212 152-295 (304)
106 1lrv_A LRV, leucine-rich repea 95.5 0.015 5.2E-07 50.0 5.1 157 75-303 57-218 (244)
107 2f31_A Diaphanous protein homo 95.4 1.1 3.7E-05 38.0 16.4 152 29-182 4-182 (233)
108 3m1i_C Exportin-1; heat repeat 95.3 3.4 0.00012 43.3 25.6 101 248-352 465-571 (1049)
109 3ebb_A Phospholipase A2-activa 95.0 0.17 6E-06 44.8 10.7 181 70-255 105-296 (304)
110 3eg5_B Protein diaphanous homo 94.8 1.9 6.6E-05 39.5 17.2 154 27-182 68-248 (383)
111 1upk_A MO25 protein; transfera 94.2 2.8 9.6E-05 37.3 20.4 197 148-350 75-283 (341)
112 3ibv_A Exportin-T; karyopherin 94.2 0.4 1.4E-05 49.9 12.7 304 36-351 204-567 (980)
113 3l9t_A Putative uncharacterize 94.1 0.48 1.6E-05 40.0 10.5 135 27-182 72-209 (240)
114 4hat_C Exportin-1; heat repeat 94.0 0.32 1.1E-05 50.8 11.3 143 163-311 465-621 (1023)
115 3qml_C Protein SLS1, nucleotid 93.6 1.1 3.6E-05 39.4 12.1 146 27-179 24-188 (315)
116 2bnx_A Diaphanous protein homo 93.6 4.3 0.00015 37.2 17.2 174 28-204 7-214 (386)
117 3ibv_A Exportin-T; karyopherin 93.2 9.1 0.00031 39.7 20.9 250 37-304 20-302 (980)
118 3m1i_C Exportin-1; heat repeat 93.1 1.7 5.9E-05 45.5 15.3 141 163-309 465-619 (1049)
119 2f31_A Diaphanous protein homo 93.1 1.3 4.5E-05 37.5 11.9 119 209-328 69-208 (233)
120 3c2g_A SYS-1 protein; beta-cat 92.5 2.1 7.3E-05 38.3 12.4 156 134-291 266-450 (619)
121 3eg5_B Protein diaphanous homo 92.2 6.8 0.00023 35.8 16.8 122 19-143 104-250 (383)
122 3a6p_A Exportin-5; exportin-5, 92.2 8 0.00027 41.2 19.0 222 27-267 13-278 (1204)
123 1lsh_A Lipovitellin (LV-1N, LV 91.4 3.1 0.00011 43.6 14.6 171 70-269 393-580 (1056)
124 3gjx_A Exportin-1; transport, 91.3 4.9 0.00017 42.1 15.8 219 24-266 27-276 (1073)
125 2bnx_A Diaphanous protein homo 91.1 3.2 0.00011 38.0 12.8 120 208-328 72-212 (386)
126 3u0r_A Apoptosis inhibitor 5; 90.6 1.8 6.1E-05 40.5 10.4 122 121-262 39-160 (507)
127 3ldz_A STAM-1, signal transduc 89.8 0.81 2.8E-05 35.4 6.5 72 237-308 43-114 (140)
128 3qml_C Protein SLS1, nucleotid 89.3 7.9 0.00027 33.9 12.8 110 23-139 69-189 (315)
129 1x5b_A Signal transducing adap 88.8 1 3.5E-05 35.8 6.6 73 236-308 52-125 (163)
130 3c2g_A SYS-1 protein; beta-cat 88.5 12 0.00041 33.6 13.5 173 171-348 263-468 (619)
131 3gjx_A Exportin-1; transport, 87.9 12 0.00041 39.2 15.5 215 69-309 29-276 (1073)
132 1mhq_A ADP-ribosylation factor 87.6 1.1 3.7E-05 35.0 5.9 73 236-308 38-116 (148)
133 3g2s_A C-terminal fragment of 87.4 1.4 4.9E-05 34.3 6.5 72 237-308 49-126 (149)
134 1mhq_A ADP-ribosylation factor 87.0 2.7 9.3E-05 32.7 7.9 76 23-98 36-117 (148)
135 3ldz_A STAM-1, signal transduc 86.6 1.8 6.2E-05 33.4 6.6 75 23-97 40-114 (140)
136 1juq_A ADP-ribosylation factor 86.5 1.4 4.8E-05 35.3 6.1 73 237-309 51-129 (171)
137 1x5b_A Signal transducing adap 86.4 2.5 8.6E-05 33.5 7.5 74 24-97 51-125 (163)
138 3g2s_A C-terminal fragment of 86.3 3.2 0.00011 32.4 7.9 76 23-98 46-127 (149)
139 1juq_A ADP-ribosylation factor 84.3 3.5 0.00012 32.9 7.5 75 24-98 49-129 (171)
140 3l9t_A Putative uncharacterize 83.6 18 0.00061 30.5 11.6 142 113-277 74-218 (240)
141 1vdy_A Hypothetical protein (R 82.1 4 0.00014 31.4 6.6 74 237-310 50-132 (140)
142 3o2t_A Symplekin; heat repeat, 81.8 20 0.00068 32.7 12.2 105 25-137 63-181 (386)
143 3gs3_A Symplekin, LD45768P; he 78.8 30 0.001 29.5 17.3 141 28-178 18-171 (257)
144 1vdy_A Hypothetical protein (R 78.3 5.9 0.0002 30.4 6.4 74 24-97 48-130 (140)
145 3o2t_A Symplekin; heat repeat, 77.6 42 0.0014 30.5 14.0 140 28-178 25-181 (386)
146 3zyq_A Hepatocyte growth facto 77.2 4 0.00014 34.3 5.7 72 237-308 46-118 (226)
147 1dvp_A HRS, hepatocyte growth 75.5 5.2 0.00018 33.4 6.0 72 237-308 43-115 (220)
148 1elk_A Target of MYB1; superhe 73.6 7.6 0.00026 30.5 6.2 72 237-308 54-130 (157)
149 3gs3_A Symplekin, LD45768P; he 73.5 42 0.0014 28.6 12.8 105 25-137 53-171 (257)
150 3zyq_A Hepatocyte growth facto 72.4 6.9 0.00024 32.8 6.0 75 23-97 43-118 (226)
151 1vsy_5 Proteasome activator BL 70.5 3.7 0.00013 42.6 4.6 118 237-355 844-971 (997)
152 1elk_A Target of MYB1; superhe 69.3 19 0.00064 28.2 7.6 75 23-97 51-130 (157)
153 1lsh_A Lipovitellin (LV-1N, LV 68.7 1.2E+02 0.004 31.7 22.6 196 72-304 315-539 (1056)
154 1dvp_A HRS, hepatocyte growth 67.2 14 0.00048 30.7 6.8 75 23-97 40-115 (220)
155 3vld_A DNA mismatch repair pro 66.0 27 0.00091 32.7 8.8 111 22-140 113-226 (500)
156 4atg_A TAF6; transcription, TF 62.0 21 0.00072 29.0 6.6 110 69-179 41-161 (196)
157 3gae_A Protein DOA1; UFD3, CDC 56.8 31 0.001 29.3 7.2 132 127-267 71-219 (253)
158 3a6p_A Exportin-5; exportin-5, 56.0 2.1E+02 0.0071 30.3 22.5 268 26-309 46-381 (1204)
159 3vld_A DNA mismatch repair pro 53.5 1.5E+02 0.005 27.8 12.4 164 82-261 50-221 (500)
160 4atg_A TAF6; transcription, TF 52.1 74 0.0025 25.8 8.3 130 151-289 40-178 (196)
161 3gae_A Protein DOA1; UFD3, CDC 51.5 26 0.0009 29.8 5.9 102 78-183 100-220 (253)
162 3pst_A Protein DOA1; protein d 51.3 1.5E+02 0.0051 27.3 11.5 161 127-300 243-422 (425)
163 3rru_A TOM1L1 protein; structu 49.6 35 0.0012 26.4 5.8 75 236-310 53-132 (152)
164 2xpp_A IWS1, ECU08_0440; trans 46.0 98 0.0034 23.7 9.9 89 44-138 39-135 (145)
165 3l3f_X Protein DOA1, DOA1/UFD3 45.0 1.3E+02 0.0046 26.9 9.6 132 127-267 180-328 (362)
166 1vsy_5 Proteasome activator BL 40.6 65 0.0022 33.4 7.8 103 70-178 135-243 (997)
167 3pst_A Protein DOA1; protein d 36.8 2E+02 0.0067 26.5 9.5 100 207-310 275-391 (425)
168 3l3f_X Protein DOA1, DOA1/UFD3 35.0 1E+02 0.0036 27.6 7.3 100 207-310 212-328 (362)
169 3rru_A TOM1L1 protein; structu 33.2 76 0.0026 24.5 5.4 76 23-98 51-131 (152)
170 2xpp_A IWS1, ECU08_0440; trans 29.8 1.9E+02 0.0064 22.1 8.3 79 270-350 52-136 (145)
171 3nfq_A Transcription factor IW 28.3 2.2E+02 0.0074 22.4 10.0 90 44-139 54-151 (170)
172 3cqx_C BAG family molecular ch 20.8 2E+02 0.0067 19.8 4.8 68 278-348 13-80 (88)
173 2b6c_A Hypothetical protein EF 20.5 3.4E+02 0.012 22.0 7.7 74 27-108 126-199 (220)
No 1
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=100.00 E-value=5.5e-37 Score=291.84 Aligned_cols=331 Identities=18% Similarity=0.198 Sum_probs=279.0
Q ss_pred hhhHHHHHhhHhHHHHHHHHhcC------------CCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCCh----------H
Q 017249 14 QEEEAWNQRKQALIEELSDKLIN------------GDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVV----------Q 71 (375)
Q Consensus 14 ~~~~~~~~~~~~~l~~Lv~~L~s------------~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v----------~ 71 (375)
+...|..+.+.|.+|.||++|+. ++++.+.+|+|+|.|++.+. ++......+.|++ +
T Consensus 59 ~~~~~~~~~~~g~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a~~al~ni~~~~-~~~~~~~~~~~~~~~l~~~~~~~~ 137 (458)
T 3nmz_A 59 SQDSCISMRQSGCLPLLIQLLHGNDKDSVLLGNSRGSKEARARASAALHNIIHSQ-PDDKRGRREIRVLHLLEQIRAYCE 137 (458)
T ss_dssp STTHHHHHHHHTCHHHHHHHHTCTTCCSCC---CCCCHHHHHHHHHHHHHHHHHS-CSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHCCCHHHHHHHHhcccccccccccccCCHHHHHHHHHHHHHHHccC-cchhHHHHHHHHHHHHHHhhhhhH
Confidence 34567888999999999999985 33799999999999999999 6666666666766 6
Q ss_pred HHHHhhCCCC--HH-----HHH-------HHHHHHHHhhccChhhHHHHHHcCChHHHHHhhcC-----------CChHH
Q 017249 72 PLVLMLVSPN--LD-----AIE-------SSLLALLNLAVRNERNKVKIATAGAIPPLVELLKF-----------QNGTL 126 (375)
Q Consensus 72 ~Lv~~L~~~~--~~-----~~~-------~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~-----------~~~~~ 126 (375)
.+++++.+.. .+ +++ +|+++|.|++. ++++|..+.+.|++++|+.+|.. .++.+
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qAv~aL~nls~-~~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l 216 (458)
T 3nmz_A 138 TCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSF-DEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITL 216 (458)
T ss_dssp HHHHHHTTTSSSSCCCSCC--CCCTTTTHHHHHHHHHHTT-SHHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHH
T ss_pred HHHHHHHhhccccccccCCccchhhHHHHHHHHHHHHhcC-CHHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHH
Confidence 6777777652 12 444 99999999988 58999999999999999999952 24678
Q ss_pred HHHHHHHHHHhhccCC-ChhHHHh-cCChHHHHHHhccCCHHHHHHHHHHHHHhccC--CCCchhhhhcCCcHHHHHHhh
Q 017249 127 RELAAAAILTLSAAAP-NKPAIAA-SGAAPLLVQILHSGSVQGRVDAVTALHYLSTC--KENSSPILDATAVPPLINLLK 202 (375)
Q Consensus 127 ~~~a~~~L~~Ls~~~~-~~~~i~~-~~~l~~L~~lL~~~~~~~~~~a~~~L~~L~~~--~~~~~~i~~~g~i~~Lv~ll~ 202 (375)
++.|+++|.||+.+++ ++..+.. .|+++.|+.+|++++..++..|+++|.||+.. ++++..+++.|+++.|+++|.
T Consensus 217 ~~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl 296 (458)
T 3nmz_A 217 RRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECAL 296 (458)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCCcccHHHHHHcCCcHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHh
Confidence 9999999999998876 5556654 56699999999999999999999999999975 467888999999999999865
Q ss_pred hcccchHHHHHHHHHHHHhhC-ChhhhHHHhhccCcHHHHHHHhccCCh----HHHHHHHHHHHHhcc---cCcHHHHHH
Q 017249 203 DCKKYSKFAEKATALLEILSS-SEEGRIAITNSDGGILTLVETVEDGSL----VSTQHAVGALLSLCQ---SCRDKYRQL 274 (375)
Q Consensus 203 ~~~~~~~~~~~a~~~L~~l~~-~~~~~~~~~~~~g~v~~Lv~lL~~~~~----~~~~~a~~~L~~l~~---~~~~~~~~~ 274 (375)
++. +..+++.++++|+||+. +++++..+....|+++.|+.+|.++++ .+++.|+++|+|++. .. ++.+..
T Consensus 297 ~s~-~~~v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~-~~~~~~ 374 (458)
T 3nmz_A 297 EVK-KESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATN-EDHRQI 374 (458)
T ss_dssp TCC-SHHHHHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTC-HHHHHH
T ss_pred cCC-CHHHHHHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCC-HHHHHH
Confidence 533 45678899999999998 778888887568999999999987654 489999999999997 44 578999
Q ss_pred HHHcCChHHHHHHhhhCCHHHHHHHHHHHHHhhcCC-hh--hhhhhhhHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHH
Q 017249 275 ILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDTP-QE--KRLSSSVLEKIVYDIAARVDGADKAAETAKRLLQDMVQR 351 (375)
Q Consensus 275 l~~~g~v~~L~~ll~~~~~~~~~~A~~~L~~l~~~~-~~--~~~~~g~~~~l~~~l~~~~~g~~~~~~~a~~~l~~l~~~ 351 (375)
+.+.|+++.|+.++.+++..+++.|+++|.+|+... .+ .+++.|++++|+..|. .++++.++.|..+|.+|...
T Consensus 375 i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~I~~Lv~LL~---s~~~~v~~~Aa~AL~nL~~~ 451 (458)
T 3nmz_A 375 LRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIH---SKHKMIAMGSAAALRNLMAN 451 (458)
T ss_dssp HHHTTHHHHHHHHSSCSCHHHHHHHHHHHHHHHSSCHHHHHHHHHHTHHHHHHTTTT---CSSHHHHHHHHHHHHHHHTC
T ss_pred HHHcccHHHHHHHHcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHh---CCCHHHHHHHHHHHHHHHcC
Confidence 999999999999999999999999999999999544 22 6788999999998774 56799999999999999754
No 2
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=100.00 E-value=7e-36 Score=291.65 Aligned_cols=326 Identities=16% Similarity=0.208 Sum_probs=285.3
Q ss_pred HHHhhHhHHHHHHHHhc-CCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhc
Q 017249 19 WNQRKQALIEELSDKLI-NGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIESSLLALLNLAV 97 (375)
Q Consensus 19 ~~~~~~~~l~~Lv~~L~-s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~~~~~~~~~a~~~L~~L~~ 97 (375)
..+.+.|.+|.||++|+ ++++++|.+|+|+|.+++.++ ++++..+++.|++|.|+.+|++++.++++.|+++|+||+.
T Consensus 94 ~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~-~e~~~~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~ 172 (510)
T 3ul1_B 94 DNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGT-SEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAG 172 (510)
T ss_dssp HHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSC-HHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCC-HHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHh
Confidence 45678899999999997 567899999999999999988 8899999999999999999999999999999999999999
Q ss_pred cChhhHHHHHHcCChHHHHHhhcCCC-----hHHHHHHHHHHHHhhccCCCh-hHHHhcCChHHHHHHhccCCHHHHHHH
Q 017249 98 RNERNKVKIATAGAIPPLVELLKFQN-----GTLRELAAAAILTLSAAAPNK-PAIAASGAAPLLVQILHSGSVQGRVDA 171 (375)
Q Consensus 98 ~~~~~r~~i~~~g~i~~Lv~lL~~~~-----~~~~~~a~~~L~~Ls~~~~~~-~~i~~~~~l~~L~~lL~~~~~~~~~~a 171 (375)
+++.+|..+.+.|++++|+.++.+.+ ..+...++++|.+++.+.... ......++++.|+.+|.+++..++..+
T Consensus 173 d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A 252 (510)
T 3ul1_B 173 DGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADS 252 (510)
T ss_dssp TCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHH
T ss_pred CCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHH
Confidence 99999999999999999999998764 346788999999999876543 344457889999999999999999999
Q ss_pred HHHHHHhccCCC-CchhhhhcCCcHHHHHHhhhcccchHHHHHHHHHHHHhhCChh-hhHHHhhccCcHHHHHHHhccCC
Q 017249 172 VTALHYLSTCKE-NSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEE-GRIAITNSDGGILTLVETVEDGS 249 (375)
Q Consensus 172 ~~~L~~L~~~~~-~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~~~~-~~~~~~~~~g~v~~Lv~lL~~~~ 249 (375)
+++|.+|+..++ ....+...|+++.|+.++.++ +..++..++++|+|++...+ .+..++ +.|+++.|+.+|.+++
T Consensus 253 ~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~--~~~v~~~al~aL~nl~~~~~~~~~~i~-~~g~l~~L~~LL~~~~ 329 (510)
T 3ul1_B 253 CWAISYLTDGPNERIEMVVKKGVVPQLVKLLGAT--ELPIVTPALRAIGNIVTGTDEQTQKVI-DAGALAVFPSLLTNPK 329 (510)
T ss_dssp HHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCS--CHHHHHHHHHHHHHHTTSCHHHHHHHH-HTTGGGGCC-CTTCSS
T ss_pred HHHHHHHhhchhhhHHHHHhcccchhhhhhhcCC--ChhhhhHHHHHHHHhhcCCHHHHHHHh-hccchHHHHHHhcCCC
Confidence 999999998764 455667899999999999976 45788999999999987654 445555 7899999999999999
Q ss_pred hHHHHHHHHHHHHhcccCcHHHHHHHHHcCChHHHHHHhhhCCHHHHHHHHHHHHHhhcCCh-h---hhhhhhhHHHHHH
Q 017249 250 LVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDTPQ-E---KRLSSSVLEKIVY 325 (375)
Q Consensus 250 ~~~~~~a~~~L~~l~~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~-~---~~~~~g~~~~l~~ 325 (375)
+.++..|+|+|.|++.+. +..+..+.+.|+++.|+.++.++++.+|+.|+++|.+++.+.. + .+++.|++++|+.
T Consensus 330 ~~v~~~A~~aL~nl~a~~-~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~ 408 (510)
T 3ul1_B 330 TNIQKEATWTMSNITAGR-QDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMN 408 (510)
T ss_dssp HHHHHHHHHHHHHHTTSC-HHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCc-HHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHH
Confidence 999999999999999987 5778889999999999999999999999999999999987542 2 5778999999999
Q ss_pred HHhhcCCChHHHHHHHHHHHHHHHHHH
Q 017249 326 DIAARVDGADKAAETAKRLLQDMVQRS 352 (375)
Q Consensus 326 ~l~~~~~g~~~~~~~a~~~l~~l~~~s 352 (375)
.|. ...++....+..+|.++.+.+
T Consensus 409 LL~---~~d~~i~~~~L~aL~nil~~~ 432 (510)
T 3ul1_B 409 LLS---AKDTKIIQVILDAISNIFQAA 432 (510)
T ss_dssp GGG---CSCHHHHHHHHHHHHHHHHHH
T ss_pred Hhc---CCCHHHHHHHHHHHHHHHHHh
Confidence 885 344889999999999998654
No 3
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=100.00 E-value=3.1e-35 Score=288.44 Aligned_cols=326 Identities=16% Similarity=0.205 Sum_probs=286.2
Q ss_pred HHHhhHhHHHHHHHHhc-CCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhc
Q 017249 19 WNQRKQALIEELSDKLI-NGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIESSLLALLNLAV 97 (375)
Q Consensus 19 ~~~~~~~~l~~Lv~~L~-s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~~~~~~~~~a~~~L~~L~~ 97 (375)
..+.+.|.+|.||.+|. +++++.+..|+++|.+++.++ ++....+++.|+++.|+.+|.+++.++++.|+++|++|+.
T Consensus 113 ~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~-~~~~~~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~ 191 (529)
T 3tpo_A 113 DNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGT-SEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAG 191 (529)
T ss_dssp HHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSC-HHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCC-HHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhc
Confidence 45678899999999997 567999999999999999998 7888899999999999999999999999999999999999
Q ss_pred cChhhHHHHHHcCChHHHHHhhcCCC-----hHHHHHHHHHHHHhhccCCC-hhHHHhcCChHHHHHHhccCCHHHHHHH
Q 017249 98 RNERNKVKIATAGAIPPLVELLKFQN-----GTLRELAAAAILTLSAAAPN-KPAIAASGAAPLLVQILHSGSVQGRVDA 171 (375)
Q Consensus 98 ~~~~~r~~i~~~g~i~~Lv~lL~~~~-----~~~~~~a~~~L~~Ls~~~~~-~~~i~~~~~l~~L~~lL~~~~~~~~~~a 171 (375)
+++.+|..+.+.|++++|+.+|...+ ..+...++++|.+++.+... .......++++.|+.+|.++++.++..+
T Consensus 192 ~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a 271 (529)
T 3tpo_A 192 AGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADS 271 (529)
T ss_dssp TCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHH
T ss_pred cCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhcccchhhHHHHhhHHHHHHHHhcCCcHHHHHHH
Confidence 99999999999999999999998654 35678899999999988654 3444457899999999999999999999
Q ss_pred HHHHHHhccCCC-CchhhhhcCCcHHHHHHhhhcccchHHHHHHHHHHHHhhCChh-hhHHHhhccCcHHHHHHHhccCC
Q 017249 172 VTALHYLSTCKE-NSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEE-GRIAITNSDGGILTLVETVEDGS 249 (375)
Q Consensus 172 ~~~L~~L~~~~~-~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~~~~-~~~~~~~~~g~v~~Lv~lL~~~~ 249 (375)
+|+|.+|+..++ ....+...|+++.|+.++.++ +..++..++++|+|++...+ .+..++ +.|+++.|+.+|.+++
T Consensus 272 ~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~--~~~v~~~a~~aL~nl~~~~~~~~~~i~-~~g~l~~L~~LL~~~~ 348 (529)
T 3tpo_A 272 CWAISYLTDGPNERIEMVVKKGVVPQLVKLLGAT--ELPIVTPALRAIGNIVTGTDEQTQKVI-DAGALAVFPSLLTNPK 348 (529)
T ss_dssp HHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCS--CHHHHHHHHHHHHHHTTSCHHHHHHHH-HTTGGGGHHHHTTCSS
T ss_pred HHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCC--ChhHHHHHHHHHHHHHccchHHHHHHh-hcccHHHHHHHHcCCC
Confidence 999999998764 456677899999999999876 45788999999999987554 455555 7899999999999999
Q ss_pred hHHHHHHHHHHHHhcccCcHHHHHHHHHcCChHHHHHHhhhCCHHHHHHHHHHHHHhhcCC-hh---hhhhhhhHHHHHH
Q 017249 250 LVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDTP-QE---KRLSSSVLEKIVY 325 (375)
Q Consensus 250 ~~~~~~a~~~L~~l~~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~~~~~A~~~L~~l~~~~-~~---~~~~~g~~~~l~~ 325 (375)
+.++..|+|+|.|++.+. +..+..+.+.|+++.|+.++.++++.+++.|+++|.+++.+. ++ .+++.|++++|+.
T Consensus 349 ~~i~~~a~~aL~nl~~~~-~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~ 427 (529)
T 3tpo_A 349 TNIQKEATWTMSNITAGR-QDQIQQVVNHGLVPFLVGVLSKADFKTQKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMN 427 (529)
T ss_dssp HHHHHHHHHHHHHHHTSC-HHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHhccc-HHHHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCcCHHHHHH
Confidence 999999999999999987 577888999999999999999999999999999999998654 22 5778999999999
Q ss_pred HHhhcCCChHHHHHHHHHHHHHHHHHH
Q 017249 326 DIAARVDGADKAAETAKRLLQDMVQRS 352 (375)
Q Consensus 326 ~l~~~~~g~~~~~~~a~~~l~~l~~~s 352 (375)
.|. ..+++....+..+|.++.+.+
T Consensus 428 LL~---~~d~~i~~~~L~aL~nil~~~ 451 (529)
T 3tpo_A 428 LLS---AKDTKIIQVILDAISNIFQAA 451 (529)
T ss_dssp GGG---CSCHHHHHHHHHHHHHHHHHH
T ss_pred Hhc---CCCHHHHHHHHHHHHHHHHHh
Confidence 885 344888899999999998653
No 4
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=100.00 E-value=2.1e-35 Score=288.31 Aligned_cols=331 Identities=17% Similarity=0.217 Sum_probs=286.4
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCC-CCHHHHHHHHHHHHHhhccChhhHH
Q 017249 26 LIEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVS-PNLDAIESSLLALLNLAVRNERNKV 104 (375)
Q Consensus 26 ~l~~Lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~-~~~~~~~~a~~~L~~L~~~~~~~r~ 104 (375)
.++.+|+.++|+|++.|..|+..++++.........+.+++.|+||.||++|++ ++++++..|+|+|+||+.++++++.
T Consensus 58 ~i~~~v~~l~s~d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~ 137 (510)
T 3ul1_B 58 SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTK 137 (510)
T ss_dssp CHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHH
Confidence 489999999999999999999999998765523457889999999999999975 4689999999999999998999999
Q ss_pred HHHHcCChHHHHHhhcCCChHHHHHHHHHHHHhhccCC-ChhHHHhcCChHHHHHHhccCC-----HHHHHHHHHHHHHh
Q 017249 105 KIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAP-NKPAIAASGAAPLLVQILHSGS-----VQGRVDAVTALHYL 178 (375)
Q Consensus 105 ~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~-~~~~i~~~~~l~~L~~lL~~~~-----~~~~~~a~~~L~~L 178 (375)
.+++.|++|.|+.+|.++++++++.|+++|+||+.+.+ .+..+...|++++|+.+|.+++ ...+..++++|.++
T Consensus 138 ~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl 217 (510)
T 3ul1_B 138 AVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNL 217 (510)
T ss_dssp HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999998754 6788889999999999998765 35688999999999
Q ss_pred ccCCCCchhh-hhcCCcHHHHHHhhhcccchHHHHHHHHHHHHhhCChhhhHHHhhccCcHHHHHHHhccCChHHHHHHH
Q 017249 179 STCKENSSPI-LDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAV 257 (375)
Q Consensus 179 ~~~~~~~~~i-~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~a~ 257 (375)
+.+......+ ...++++.|++++.+. +..++..++++|++|+..+..+..++...|+++.|+.+|.+++..++..++
T Consensus 218 ~~~~~~~~~~~~~~~~lp~L~~LL~~~--~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al 295 (510)
T 3ul1_B 218 CRNKNPAPPLDAVEQILPTLVRLLHHN--DPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPAL 295 (510)
T ss_dssp HCCCSSCCCHHHHHHHHHHHHHHTTCS--CHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHH
T ss_pred hhcccchhHHHHHHhHHHHHHHHHhcC--CHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHHH
Confidence 9876554444 3468999999999876 457888999999999987776666555789999999999999999999999
Q ss_pred HHHHHhcccCcHHHHHHHHHcCChHHHHHHhhhCCHHHHHHHHHHHHHhhcCChh---hhhhhhhHHHHHHHHhhcCCCh
Q 017249 258 GALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDTPQE---KRLSSSVLEKIVYDIAARVDGA 334 (375)
Q Consensus 258 ~~L~~l~~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~~---~~~~~g~~~~l~~~l~~~~~g~ 334 (375)
++|+|++.++ +.....+++.|+++.|+.++.++++.+++.|+++|.+++...+. .++..|+++.|+..|. +++
T Consensus 296 ~aL~nl~~~~-~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~---~~~ 371 (510)
T 3ul1_B 296 RAIGNIVTGT-DEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLS---KAD 371 (510)
T ss_dssp HHHHHHTTSC-HHHHHHHHHTTGGGGCC-CTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHH---SSC
T ss_pred HHHHHhhcCC-HHHHHHHhhccchHHHHHHhcCCCHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHc---CCC
Confidence 9999999887 57788889999999999999999999999999999999987743 5778899999998886 566
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 017249 335 DKAAETAKRLLQDMVQRSMELSMTRIQQ 362 (375)
Q Consensus 335 ~~~~~~a~~~l~~l~~~s~~~~~~~~~~ 362 (375)
.+.+..|..+|.++...+-..+...+.+
T Consensus 372 ~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~ 399 (510)
T 3ul1_B 372 FKTQKEAAWAITNYTSGGTVEQIVYLVH 399 (510)
T ss_dssp HHHHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCCHHHHHHHHH
Confidence 9999999999999986544444444443
No 5
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=100.00 E-value=7.1e-36 Score=299.41 Aligned_cols=337 Identities=15% Similarity=0.106 Sum_probs=291.7
Q ss_pred cchhhhHHHHHh-hHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCCh-----------------------------hh
Q 017249 11 ATDQEEEAWNQR-KQALIEELSDKLINGDLETKIEAARDIRKVVKKSSL-----------------------------KT 60 (375)
Q Consensus 11 ~~~~~~~~~~~~-~~~~l~~Lv~~L~s~~~~~~~~a~~~l~~l~~~~~~-----------------------------~~ 60 (375)
.+.+.+.+..+. +.+++|.||.+|+++++..+..|+++|.|++.+. + ..
T Consensus 406 LS~~~~vk~~lv~d~g~Ip~LV~LL~s~d~~i~~~al~~L~NLt~~~-d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v 484 (810)
T 3now_A 406 LTLDAECKEKLIEDKASIHALMDLARGGNQSCLYGVVTTFVNLCNAY-EKQEMLPEMIELAKFAKQHIPEEHELDDVDFI 484 (810)
T ss_dssp HTTSHHHHHHHHHCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTTCS-CCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHH
T ss_pred HhCCcHHHHHHHHccchHHHHHHHhCCCChHHHHHHHHHHHHHcCCc-hhhhhhHHHHHHHHHhhccCccccccccHHHH
Confidence 345677788877 5799999999999999999999999999999854 1 12
Q ss_pred H---HHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhccChhhHHHHHHcCChHHHHHhhcCCChHHHHHHHHHHHHh
Q 017249 61 R---SEFAAAGVVQPLVLMLVSPNLDAIESSLLALLNLAVRNERNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTL 137 (375)
Q Consensus 61 ~---~~~~~~g~v~~Lv~~L~~~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L 137 (375)
+ ..+++.|+++.|+.+|+++++.+++.|+|+|.|++. ++++|..+++.|++|+|+.+|.++++..++.|+++|.+|
T Consensus 485 ~~r~~~VveaGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~-d~~~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL 563 (810)
T 3now_A 485 NKRITVLANEGITTALCALAKTESHNSQELIARVLNAVCG-LKELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARI 563 (810)
T ss_dssp HHHHHHHHHTTHHHHHHHHHTCCCHHHHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcC-CHHHHHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHH
Confidence 2 577899999999999999999999999999999997 678999999999999999999999999999999999999
Q ss_pred hccCCChhHHH---hcCChHHHHHHhccCC-HHHHHHHHHHHHHhccCC-CCchhhhhcCCcHHHHHHhhhcccchHHHH
Q 017249 138 SAAAPNKPAIA---ASGAAPLLVQILHSGS-VQGRVDAVTALHYLSTCK-ENSSPILDATAVPPLINLLKDCKKYSKFAE 212 (375)
Q Consensus 138 s~~~~~~~~i~---~~~~l~~L~~lL~~~~-~~~~~~a~~~L~~L~~~~-~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~ 212 (375)
+.+.+....+. ..+++++|+++|.++. ...+..|+++|.||+..+ +++..+++.|+++.|+.++.+++ ..++.
T Consensus 564 ~~~~~p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~~--~~Vq~ 641 (810)
T 3now_A 564 GITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDH--LYLTR 641 (810)
T ss_dssp HHHSCHHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSCC--TTHHH
T ss_pred hcCCChhhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCC--HHHHH
Confidence 87654333221 2469999999998663 345678999999999874 67888999999999999999864 46889
Q ss_pred HHHHHHHHhhCChhhhHHHhhccCcHHHHHHHhccCChHHHHHHHHHHHHhcccCcHHHHHHHHH-cCChHHHHHHhhhC
Q 017249 213 KATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILK-EGAIPGLLRLTVEG 291 (375)
Q Consensus 213 ~a~~~L~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~-~g~v~~L~~ll~~~ 291 (375)
.|+++|+||+.+++.+..++...|.++.|+.++.+.+..++..|+|+|+|++.++ +...+.+++ .|+++.|+.++.++
T Consensus 642 ~A~~~L~NLa~~~~~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s-~~~~~~ii~~~g~I~~Lv~LL~s~ 720 (810)
T 3now_A 642 AAAQCLCNLVMSEDVIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVS-VKCCEKILAIASWLDILHTLIANP 720 (810)
T ss_dssp HHHHHHHHHTTSHHHHHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHC-HHHHHHHHTSTTHHHHHHHHHTCS
T ss_pred HHHHHHHHHhCChHHHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCC-HHHHHHHHHHcCCHHHHHHHHCCC
Confidence 9999999999999999988843789999999999999999999999999999965 466788888 89999999999999
Q ss_pred CHHHHHHHHHHHHHhhcCChh---hhhhhhhHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHH
Q 017249 292 TFEAQERARTLLDLLRDTPQE---KRLSSSVLEKIVYDIAARVDGADKAAETAKRLLQDMVQRS 352 (375)
Q Consensus 292 ~~~~~~~A~~~L~~l~~~~~~---~~~~~g~~~~l~~~l~~~~~g~~~~~~~a~~~l~~l~~~s 352 (375)
++.+|+.|+++|.|+..+..+ .+.+.|++++|...+..+.....+..+.|.++|+++.+..
T Consensus 721 d~~vq~~A~~aL~NL~~~s~e~~~~l~e~G~i~~L~~LL~~~d~~~~~i~e~Al~aL~~ll~~g 784 (810)
T 3now_A 721 SPAVQHRGIVIILNMINAGEEIAKKLFETDIMELLSGLGQLPDDTRAKAREVATQCLAAAERYR 784 (810)
T ss_dssp SHHHHHHHHHHHHHHHTTCHHHHHHHHTSTHHHHHTTSCCCTTSTTHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHhCcccCcHHHHHHHHHHHHHHHhCC
Confidence 999999999999999886643 6889999999988775433346899999999999998653
No 6
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=100.00 E-value=1.8e-35 Score=287.39 Aligned_cols=336 Identities=16% Similarity=0.184 Sum_probs=276.1
Q ss_pred hHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcc-Chh
Q 017249 23 KQALIEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIESSLLALLNLAVR-NER 101 (375)
Q Consensus 23 ~~~~l~~Lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~~~~~~~~~a~~~L~~L~~~-~~~ 101 (375)
....++.||.+|++++++.|..|+++|.+++..+ ++++..+++.|+|+.||++|++++.++++.|+++|+||+.+ +++
T Consensus 46 ~~~~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~-~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~ 124 (584)
T 3l6x_A 46 RQPELPEVIAMLGFRLDAVKSNAAAYLQHLCYRN-DKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQD 124 (584)
T ss_dssp CCCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTTC-HHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHH
T ss_pred ccccHHHHHHHHCCCCHHHHHHHHHHHHHHHcCC-hHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHH
Confidence 4567999999999999999999999999999887 79999999999999999999999999999999999999985 689
Q ss_pred hHHHHHHcCChHHHHHhhcC-CChHHHHHHHHHHHHhhccCCChhHHHhcCChHHHHHHhc------------------c
Q 017249 102 NKVKIATAGAIPPLVELLKF-QNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILH------------------S 162 (375)
Q Consensus 102 ~r~~i~~~g~i~~Lv~lL~~-~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~l~~L~~lL~------------------~ 162 (375)
+|..+++.|+||+|+.+|.+ .+.++++.++++|+||+.+++++..|+. ++++.|++++. .
T Consensus 125 nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~~k~~I~~-~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~ 203 (584)
T 3l6x_A 125 NKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKMEIVD-HALHALTDEVIIPHSGWEREPNEDCKPRHI 203 (584)
T ss_dssp HHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGGGHHHHHH-HTHHHHHHHTHHHHHCCC----------CC
T ss_pred HHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhhHHHHh-ccHHHHHHHHhccccccccccccccccccc
Confidence 99999999999999999997 5789999999999999998889988885 57999999872 2
Q ss_pred CCHHHHHHHHHHHHHhccCCC-Cchhhhhc-CCcHHHHHHhhhc----ccchHHHHHHHHHHHHhhCChhh---------
Q 017249 163 GSVQGRVDAVTALHYLSTCKE-NSSPILDA-TAVPPLINLLKDC----KKYSKFAEKATALLEILSSSEEG--------- 227 (375)
Q Consensus 163 ~~~~~~~~a~~~L~~L~~~~~-~~~~i~~~-g~i~~Lv~ll~~~----~~~~~~~~~a~~~L~~l~~~~~~--------- 227 (375)
.+..++.+|+++|.||+..++ ++..+++. |+++.|+.++.+. ..+....+.|+++|+||+.....
T Consensus 204 ~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~ 283 (584)
T 3l6x_A 204 EWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQ 283 (584)
T ss_dssp CCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC--
T ss_pred ccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhhhh
Confidence 257899999999999998764 58888874 6678999999863 23446789999999999976211
Q ss_pred -----------------hHHHhhccCcHHHHHHHhc-cCChHHHHHHHHHHHHhcccCcH---HHHHHHHHcCChHHHHH
Q 017249 228 -----------------RIAITNSDGGILTLVETVE-DGSLVSTQHAVGALLSLCQSCRD---KYRQLILKEGAIPGLLR 286 (375)
Q Consensus 228 -----------------~~~~~~~~g~v~~Lv~lL~-~~~~~~~~~a~~~L~~l~~~~~~---~~~~~l~~~g~v~~L~~ 286 (375)
...+. +.++++.|+.+|. +.++.+++.|+++|.|||.+..+ ..+..+.+.++++.|+.
T Consensus 284 ~~~~~~~~~~~~~~~~Gve~L~-~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~ 362 (584)
T 3l6x_A 284 EAAPNVANNTGTSPARGYELLF-QPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIAD 362 (584)
T ss_dssp ------------CCCCGGGGGG-SHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHH
T ss_pred hhcccccccccccCchhHHHHh-cccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHH
Confidence 11111 2345677888996 45799999999999999987532 22334455899999999
Q ss_pred HhhhCCHHHHHHHHHHHHHhhcCChh-hhhhhhhHHHHHHHHhhcCCC-----hHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 017249 287 LTVEGTFEAQERARTLLDLLRDTPQE-KRLSSSVLEKIVYDIAARVDG-----ADKAAETAKRLLQDMVQRSMELSMTRI 360 (375)
Q Consensus 287 ll~~~~~~~~~~A~~~L~~l~~~~~~-~~~~~g~~~~l~~~l~~~~~g-----~~~~~~~a~~~l~~l~~~s~~~~~~~~ 360 (375)
++.++++.+++.|+++|++|+.+... ..+..|+++.|+..|...... .......|..+|.+++..+. .+...|
T Consensus 363 LL~s~~~~v~~~A~~aL~nLs~~~~~~~~I~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~-~~~~~I 441 (584)
T 3l6x_A 363 LLTNEHERVVKAASGALRNLAVDARNKELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENL-EAAKKL 441 (584)
T ss_dssp GGGCSCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTTCH-HHHHHH
T ss_pred HHcCCCHHHHHHHHHHHHHHhCChhHHHHHHhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcCCH-HHHHHH
Confidence 99999999999999999999988744 567899999999988643211 36778889999999985543 333344
Q ss_pred HH
Q 017249 361 QQ 362 (375)
Q Consensus 361 ~~ 362 (375)
.+
T Consensus 442 ~~ 443 (584)
T 3l6x_A 442 RE 443 (584)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 7
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=100.00 E-value=1.9e-35 Score=284.52 Aligned_cols=323 Identities=20% Similarity=0.235 Sum_probs=270.5
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhccChhhHHH
Q 017249 26 LIEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIESSLLALLNLAVRNERNKVK 105 (375)
Q Consensus 26 ~l~~Lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~~~~~~~~~a~~~L~~L~~~~~~~r~~ 105 (375)
.++.|+.+|++++++.|..|+++|.+++.++ +..+..+++.|+++.|+++|++++++++..|+++|+||+.++++++..
T Consensus 3 ~l~~lv~~L~s~~~~~q~~A~~~L~~l~~~~-~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~ 81 (457)
T 1xm9_A 3 TIPKAVQYLSSQDEKYQAIGAYYIQHTCFQD-ESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLE 81 (457)
T ss_dssp CHHHHHHHHHSSCTHHHHHHHHHHHHHTSSC-SSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHH
T ss_pred CHHHHHHHHCCCCHHHHHHHHHHHHHHHcCC-hHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 5799999999999999999999999999877 677888999999999999999999999999999999999977999999
Q ss_pred HHHcCChHHHHHhhc-CCChHHHHHHHHHHHHhhccCCChhHHHhcCChHHHHHHhc--------cC--------CHHHH
Q 017249 106 IATAGAIPPLVELLK-FQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILH--------SG--------SVQGR 168 (375)
Q Consensus 106 i~~~g~i~~Lv~lL~-~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~l~~L~~lL~--------~~--------~~~~~ 168 (375)
+++.|++|+|+++|. ++++++++.++++|+||+.+++++..+.. |+++.|+++|. ++ +..++
T Consensus 82 i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~~~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~ 160 (457)
T 1xm9_A 82 TRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIA-DALPVLADRVIIPFSGWCDGNSNMSREVVDPEVF 160 (457)
T ss_dssp HHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHH-HHHHHHHHHTTHHHHTCC---------CCCHHHH
T ss_pred HHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCHHhHHHHHh-ccHHHHHHHHhccccccccCccchhcccccHHHH
Confidence 999999999999999 78999999999999999999888998888 99999999993 22 45677
Q ss_pred HHHHHHHHHhccCCCCchhhhhc-CCcHHHHHHhhhc----ccchHHHHHHHHHHHHhhCCh------------------
Q 017249 169 VDAVTALHYLSTCKENSSPILDA-TAVPPLINLLKDC----KKYSKFAEKATALLEILSSSE------------------ 225 (375)
Q Consensus 169 ~~a~~~L~~L~~~~~~~~~i~~~-g~i~~Lv~ll~~~----~~~~~~~~~a~~~L~~l~~~~------------------ 225 (375)
..|+|+|+||+.+++++..+.+. |+++.|+.++.++ ..+..+.+.++.+|+||+...
T Consensus 161 ~~a~~aL~nLs~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~~ 240 (457)
T 1xm9_A 161 FNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNA 240 (457)
T ss_dssp HHHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC---
T ss_pred HHHHHHHHHHccCHHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhcccccccc
Confidence 79999999999888888888887 9999999999863 123356788999999997421
Q ss_pred ---------------------------------hhhHHHhhccCcHHHHHHHhcc-CChHHHHHHHHHHHHhcccCcH--
Q 017249 226 ---------------------------------EGRIAITNSDGGILTLVETVED-GSLVSTQHAVGALLSLCQSCRD-- 269 (375)
Q Consensus 226 ---------------------------------~~~~~~~~~~g~v~~Lv~lL~~-~~~~~~~~a~~~L~~l~~~~~~-- 269 (375)
.....+. +.|+++.|+.+|.+ .++.+++.|+|+|.|++.+..+
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~ 319 (457)
T 1xm9_A 241 YTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLY-HSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMS 319 (457)
T ss_dssp -------------------------CCCCCSSCCGGGGGG-SHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHH
T ss_pred cccccccchhhccchhhhhccccCCccccccCchHHHHHh-CcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcch
Confidence 1222333 56788999999975 4689999999999999987532
Q ss_pred -HHHHHHH-HcCChHHHHHHhhhCCHHHHHHHHHHHHHhhcCChh-hhhhhhhHHHHHHHHhhcCC---ChHHHHHHHHH
Q 017249 270 -KYRQLIL-KEGAIPGLLRLTVEGTFEAQERARTLLDLLRDTPQE-KRLSSSVLEKIVYDIAARVD---GADKAAETAKR 343 (375)
Q Consensus 270 -~~~~~l~-~~g~v~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~~-~~~~~g~~~~l~~~l~~~~~---g~~~~~~~a~~ 343 (375)
...+.++ +.|++|.|++++.++++++++.|+++|++++.+.+. ..+..|++++|+..|..... ..++....+..
T Consensus 320 ~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~~~~~~~i~~~~i~~Lv~lL~~~~~~~~~~~~v~~~~l~ 399 (457)
T 1xm9_A 320 SGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACY 399 (457)
T ss_dssp HHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSGGGHHHHHHHTHHHHHHTTTSCCSCSTTHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcCHHHHHHHHHhhhHHHHHhccCCCCCCCCcHHHHHHHHH
Confidence 2213344 589999999999999999999999999999987744 56778999999998863221 13456677777
Q ss_pred HHHHHHHH
Q 017249 344 LLQDMVQR 351 (375)
Q Consensus 344 ~l~~l~~~ 351 (375)
+|.++...
T Consensus 400 ~l~ni~~~ 407 (457)
T 1xm9_A 400 TVRNLMAS 407 (457)
T ss_dssp HHHHHHTT
T ss_pred HHHHHHhc
Confidence 88887643
No 8
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=100.00 E-value=1.4e-35 Score=274.25 Aligned_cols=279 Identities=20% Similarity=0.225 Sum_probs=241.3
Q ss_pred HHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCC-----------CCHHHHHHHHHHHHHhhccChhhHHHHH
Q 017249 39 LETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVS-----------PNLDAIESSLLALLNLAVRNERNKVKIA 107 (375)
Q Consensus 39 ~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~-----------~~~~~~~~a~~~L~~L~~~~~~~r~~i~ 107 (375)
...+..|+++|.+++.+. ++|+.+++.|++++|+.+|.+ .+++++..|+++|.||+.+++.++..+.
T Consensus 46 ~~~~~~A~~aL~nls~d~--e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~ 123 (354)
T 3nmw_A 46 EHQICPAVCVLMKLSFDE--EHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLC 123 (354)
T ss_dssp GGTHHHHHHHHHHHHTSH--HHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCH--HHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 355668999999999886 899999999999999999952 2367999999999999998888898887
Q ss_pred Hc-CChHHHHHhhcCCChHHHHHHHHHHHHhhcc--CCChhHHHhcCChHHHHHHh-ccCCHHHHHHHHHHHHHhcc-CC
Q 017249 108 TA-GAIPPLVELLKFQNGTLRELAAAAILTLSAA--APNKPAIAASGAAPLLVQIL-HSGSVQGRVDAVTALHYLST-CK 182 (375)
Q Consensus 108 ~~-g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~--~~~~~~i~~~~~l~~L~~lL-~~~~~~~~~~a~~~L~~L~~-~~ 182 (375)
.. |++|+|+++|+++++++++.|+++|+||+.. ++++..+.+.|+++.|+++| ++++..+++.|+.+|+||+. .+
T Consensus 124 ~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~ 203 (354)
T 3nmw_A 124 SMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCT 203 (354)
T ss_dssp HCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCH
T ss_pred HcCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccCh
Confidence 65 5599999999999999999999999999985 34788889999999999975 66788999999999999998 55
Q ss_pred CCchhhh-hcCCcHHHHHHhhhcccch--HHHHHHHHHHHHhhC----ChhhhHHHhhccCcHHHHHHHhccCChHHHHH
Q 017249 183 ENSSPIL-DATAVPPLINLLKDCKKYS--KFAEKATALLEILSS----SEEGRIAITNSDGGILTLVETVEDGSLVSTQH 255 (375)
Q Consensus 183 ~~~~~i~-~~g~i~~Lv~ll~~~~~~~--~~~~~a~~~L~~l~~----~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~ 255 (375)
+++..++ ..|+++.|++++.++++.. .+++.++++|+||+. +++++..+. +.|+++.|+.+|.+++..+++.
T Consensus 204 ~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~-~~g~i~~Lv~lL~~~~~~v~~~ 282 (354)
T 3nmw_A 204 ENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILR-ENNCLQTLLQHLKSHSLTIVSN 282 (354)
T ss_dssp HHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHH-TTTHHHHHHHHTTCSCHHHHHH
T ss_pred hhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHH-HcCCHHHHHHHHcCCChHHHHH
Confidence 7888887 6899999999998764321 578899999999995 788887777 7899999999999999999999
Q ss_pred HHHHHHHhcccCcHHHHHHHHHcCChHHHHHHhhhCCHHHHHHHHHHHHHhhcCChhhhhhhhhHH
Q 017249 256 AVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDTPQEKRLSSSVLE 321 (375)
Q Consensus 256 a~~~L~~l~~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~~~~~~~g~~~ 321 (375)
|+++|+|++..+ ++.+..+++.|+++.|+.++.++++.+++.|+++|.+|+.+.+.+....++++
T Consensus 283 A~~aL~nLa~~~-~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~~~~~~~~~~~~~ 347 (354)
T 3nmw_A 283 ACGTLWNLSARN-PKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPAKYKDANIMS 347 (354)
T ss_dssp HHHHHHHHTSSC-HHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCCGGGC------
T ss_pred HHHHHHHHhCCC-HHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCHHHHhhhcccC
Confidence 999999999765 57899999999999999999999999999999999999998876555544444
No 9
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=100.00 E-value=1.3e-33 Score=276.92 Aligned_cols=332 Identities=17% Similarity=0.216 Sum_probs=287.2
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCC-CCHHHHHHHHHHHHHhhccChhhH
Q 017249 25 ALIEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVS-PNLDAIESSLLALLNLAVRNERNK 103 (375)
Q Consensus 25 ~~l~~Lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~-~~~~~~~~a~~~L~~L~~~~~~~r 103 (375)
..++.++..++|++++.+..|+..++++.........+.+++.|++|.|+++|.. +++.++..|+|+|.|++.++++.+
T Consensus 76 ~~l~~lv~~l~s~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~ 155 (529)
T 3tpo_A 76 WSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQT 155 (529)
T ss_dssp CCHHHHHHHHTSSCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHH
Confidence 3589999999999999999999999998765524567889999999999999965 568999999999999999899999
Q ss_pred HHHHHcCChHHHHHhhcCCChHHHHHHHHHHHHhhccC-CChhHHHhcCChHHHHHHhccCC-----HHHHHHHHHHHHH
Q 017249 104 VKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAA-PNKPAIAASGAAPLLVQILHSGS-----VQGRVDAVTALHY 177 (375)
Q Consensus 104 ~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~-~~~~~i~~~~~l~~L~~lL~~~~-----~~~~~~a~~~L~~ 177 (375)
..+++.|++|.|+.+|.++++++++.|+++|+||+.+. ..+..+...|++++|+.+|..++ ...+..++++|.+
T Consensus 156 ~~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~n 235 (529)
T 3tpo_A 156 KAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSN 235 (529)
T ss_dssp HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999875 46888889999999999998764 3568899999999
Q ss_pred hccCCCCchhh-hhcCCcHHHHHHhhhcccchHHHHHHHHHHHHhhCChhhhHHHhhccCcHHHHHHHhccCChHHHHHH
Q 017249 178 LSTCKENSSPI-LDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHA 256 (375)
Q Consensus 178 L~~~~~~~~~i-~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~a 256 (375)
++.+......+ ...+++|.|++++.++ +..++..++++|.+++..+..+..++...|+++.|+.+|.+++..++..|
T Consensus 236 l~~~~~~~~~~~~~~~~lp~L~~LL~~~--~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a 313 (529)
T 3tpo_A 236 LCRNKNPAPPLDAVEQILPTLVRLLHHN--DPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPA 313 (529)
T ss_dssp HHCCCTTCCCHHHHHHHHHHHHHHTTSS--CHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHH
T ss_pred HHhcccchhhHHHHhhHHHHHHHHhcCC--cHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHH
Confidence 99876544443 3468999999999876 45788899999999998776666655578999999999999999999999
Q ss_pred HHHHHHhcccCcHHHHHHHHHcCChHHHHHHhhhCCHHHHHHHHHHHHHhhcCChh---hhhhhhhHHHHHHHHhhcCCC
Q 017249 257 VGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDTPQE---KRLSSSVLEKIVYDIAARVDG 333 (375)
Q Consensus 257 ~~~L~~l~~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~~---~~~~~g~~~~l~~~l~~~~~g 333 (375)
+.+|+|++.++ +.....+++.|+++.|+.++.++++.+++.|+++|.+++.+.+. .++..|+++.|+..|. ++
T Consensus 314 ~~aL~nl~~~~-~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~---~~ 389 (529)
T 3tpo_A 314 LRAIGNIVTGT-DEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLS---KA 389 (529)
T ss_dssp HHHHHHHTTSC-HHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHH---SS
T ss_pred HHHHHHHHccc-hHHHHHHhhcccHHHHHHHHcCCCHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhc---CC
Confidence 99999999887 57788889999999999999999999999999999999987743 5778999999998886 56
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 017249 334 ADKAAETAKRLLQDMVQRSMELSMTRIQQ 362 (375)
Q Consensus 334 ~~~~~~~a~~~l~~l~~~s~~~~~~~~~~ 362 (375)
+.+.+..|.++|.++...+-..+...+.+
T Consensus 390 ~~~v~~~A~~aL~nl~~~~~~~~~~~l~~ 418 (529)
T 3tpo_A 390 DFKTQKAAAWAITNYTSGGTVEQIVYLVH 418 (529)
T ss_dssp CHHHHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 68999999999999986544444444443
No 10
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=100.00 E-value=6.6e-33 Score=272.05 Aligned_cols=328 Identities=16% Similarity=0.184 Sum_probs=290.4
Q ss_pred HHHHhhHhHHHHHHHHhcCCC-HHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhh
Q 017249 18 AWNQRKQALIEELSDKLINGD-LETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIESSLLALLNLA 96 (375)
Q Consensus 18 ~~~~~~~~~l~~Lv~~L~s~~-~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~~~~~~~~~a~~~L~~L~ 96 (375)
...+...+.++.|+.+|.+++ +.++..|+++|.+++.++ ++++..+++.|+++.|+.+|.+++++++..|+++|++|+
T Consensus 110 ~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~-~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~ 188 (528)
T 4b8j_A 110 IEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGT-SENTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVA 188 (528)
T ss_dssp HHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSC-HHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCC-HHHHHHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHh
Confidence 445667789999999999876 999999999999999987 789999999999999999999999999999999999999
Q ss_pred ccChhhHHHHHHcCChHHHHHhh-cCCChHHHHHHHHHHHHhhccCCChhHHHhcCChHHHHHHhccCCHHHHHHHHHHH
Q 017249 97 VRNERNKVKIATAGAIPPLVELL-KFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHSGSVQGRVDAVTAL 175 (375)
Q Consensus 97 ~~~~~~r~~i~~~g~i~~Lv~lL-~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L 175 (375)
.+++.++..+...|++++|+.+| .+.++.++..++++|.+|+...+........++++.|+.+|.+++..++..++++|
T Consensus 189 ~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL 268 (528)
T 4b8j_A 189 GDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFEQTRPALPALARLIHSNDEEVLTDACWAL 268 (528)
T ss_dssp HTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSSCCCHHHHTTHHHHHHHHTTCCCHHHHHHHHHHH
T ss_pred CCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 98899999999999999999999 56789999999999999998866555556689999999999999999999999999
Q ss_pred HHhccCCCC-chhhhhcCCcHHHHHHhhhcccchHHHHHHHHHHHHhhCC-hhhhHHHhhccCcHHHHHHHhccC-ChHH
Q 017249 176 HYLSTCKEN-SSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSS-EEGRIAITNSDGGILTLVETVEDG-SLVS 252 (375)
Q Consensus 176 ~~L~~~~~~-~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~~g~v~~Lv~lL~~~-~~~~ 252 (375)
.+|+..++. ...+.+.|+++.|+.++.++ +..++..|+++|+||+.. +.....++ +.|+++.|+.+|.++ ++.+
T Consensus 269 ~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~--~~~v~~~a~~~L~nl~~~~~~~~~~~~-~~~~l~~L~~lL~~~~~~~v 345 (528)
T 4b8j_A 269 SYLSDGTNDKIQAVIEAGVCPRLVELLLHP--SPSVLIPALRTVGNIVTGDDAQTQCII-DHQALPCLLSLLTQNLKKSI 345 (528)
T ss_dssp HHHTSSCHHHHHHHHHTTCHHHHHHHTTCS--CHHHHHHHHHHHHHHTTSCHHHHHHHH-TTTHHHHHHHHHHSCCCHHH
T ss_pred HHHHcCCHHHHHHHHHcCHHHHHHHHHcCC--ChhHHHHHHHHHHHHHcCCHHHHHHHH-HhhhHHHHHHHHcCCCcHHH
Confidence 999977544 45677889999999999987 457889999999999985 55555566 689999999999998 8999
Q ss_pred HHHHHHHHHHhcccCcHHHHHHHHHcCChHHHHHHhhhCCHHHHHHHHHHHHHhhcCC-hh---hhhhhhhHHHHHHHHh
Q 017249 253 TQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDTP-QE---KRLSSSVLEKIVYDIA 328 (375)
Q Consensus 253 ~~~a~~~L~~l~~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~~~~~A~~~L~~l~~~~-~~---~~~~~g~~~~l~~~l~ 328 (375)
+..|+++|.|++.+. ++....+++.|+++.|+.++.++++.+++.|+++|.+++... +. .+++.|+++.|+..|.
T Consensus 346 ~~~A~~~L~nl~~~~-~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~ 424 (528)
T 4b8j_A 346 KKEACWTISNITAGN-KDQIQAVINAGIIGPLVNLLQTAEFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDLLI 424 (528)
T ss_dssp HHHHHHHHHHHHTSC-HHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGG
T ss_pred HHHHHHHHHHHHCCC-HHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHHc
Confidence 999999999999876 567788889999999999999999999999999999998763 22 4667899999998885
Q ss_pred hcCCChHHHHHHHHHHHHHHHHHHH
Q 017249 329 ARVDGADKAAETAKRLLQDMVQRSM 353 (375)
Q Consensus 329 ~~~~g~~~~~~~a~~~l~~l~~~s~ 353 (375)
++.++.+..|..+|.+|.+...
T Consensus 425 ---~~d~~v~~~al~~L~~l~~~~~ 446 (528)
T 4b8j_A 425 ---CPDIRIVTVCLEGLENILKVGE 446 (528)
T ss_dssp ---CSCHHHHHHHHHHHHHHHHHHH
T ss_pred ---CCCHHHHHHHHHHHHHHHHHHH
Confidence 4558999999999999986543
No 11
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=100.00 E-value=6.6e-34 Score=273.81 Aligned_cols=327 Identities=20% Similarity=0.200 Sum_probs=273.6
Q ss_pred hhhhHHHHHhhHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhC-CCCHHHHHHHHHH
Q 017249 13 DQEEEAWNQRKQALIEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLV-SPNLDAIESSLLA 91 (375)
Q Consensus 13 ~~~~~~~~~~~~~~l~~Lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~-~~~~~~~~~a~~~ 91 (375)
+++..+..+...|++|.|+.+|++++++.+..|+++|.+++.++ ++++..+++.|+++.|+++|+ ++++++++.++++
T Consensus 32 ~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~-~~~k~~i~~~G~i~~Lv~lL~~~~~~~~~~~a~~a 110 (457)
T 1xm9_A 32 QDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRS-TTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGL 110 (457)
T ss_dssp SCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSC-HHHHHHHHHTTCHHHHHHHHTTCCCHHHHHHHHHH
T ss_pred CChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCC-HHHHHHHHHcCCHHHHHHHHhhCCCHHHHHHHHHH
Confidence 44556678899999999999999999999999999999999987 799999999999999999999 8899999999999
Q ss_pred HHHhhccChhhHHHHHHcCChHHHHHhhc--------CC--------ChHHHHHHHHHHHHhhccCCChhHHHhc-CChH
Q 017249 92 LLNLAVRNERNKVKIATAGAIPPLVELLK--------FQ--------NGTLRELAAAAILTLSAAAPNKPAIAAS-GAAP 154 (375)
Q Consensus 92 L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~--------~~--------~~~~~~~a~~~L~~Ls~~~~~~~~i~~~-~~l~ 154 (375)
|.||+.+ +++|..+++ |++|+|+++|. ++ ++.+...|+++|+||+.+++++..+.+. |+++
T Consensus 111 L~nLa~~-~~~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~~~a~~aL~nLs~~~~~~~~i~~~~g~i~ 188 (457)
T 1xm9_A 111 LWNLSST-DELKEELIA-DALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRNYSGLID 188 (457)
T ss_dssp HHHHHTS-SSTHHHHHH-HHHHHHHHHTTHHHHTCC---------CCCHHHHHHHHHHHHHHTTSHHHHHHHTTSTTHHH
T ss_pred HHHHhcC-HHhHHHHHh-ccHHHHHHHHhccccccccCccchhcccccHHHHHHHHHHHHHHccCHHHHHHHHHcCCCHH
Confidence 9999996 789999999 99999999993 32 4566679999999999886678888886 9999
Q ss_pred HHHHHhcc------CCHHHHHHHHHHHHHhccC-----------------------------------------------
Q 017249 155 LLVQILHS------GSVQGRVDAVTALHYLSTC----------------------------------------------- 181 (375)
Q Consensus 155 ~L~~lL~~------~~~~~~~~a~~~L~~L~~~----------------------------------------------- 181 (375)
.|+.+|++ .+..++..++++|.+|+..
T Consensus 189 ~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (457)
T 1xm9_A 189 SLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPE 268 (457)
T ss_dssp HHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC----------------------------CCC
T ss_pred HHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhcccccccccccccccchhhccchhhhhccccCCccc
Confidence 99999986 4567888999999998731
Q ss_pred ----CCCchhhhhcCCcHHHHHHhhhcccchHHHHHHHHHHHHhhCChh-----hhHHHhhccCcHHHHHHHhccCChHH
Q 017249 182 ----KENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEE-----GRIAITNSDGGILTLVETVEDGSLVS 252 (375)
Q Consensus 182 ----~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~~~~-----~~~~~~~~~g~v~~Lv~lL~~~~~~~ 252 (375)
+.....+.+.|+++.|+.+|.++. .+.+++.|+++|+||+.... ..+.++.+.|+++.|+++|.+++..+
T Consensus 269 ~~~~~~~~~~l~~~~~l~~L~~lL~~~~-~~~~~e~a~~aL~nl~~~~~~~~~~~~~~~v~~~~~l~~Lv~LL~~~~~~v 347 (457)
T 1xm9_A 269 EETNPKGSGWLYHSDAIRTYLNLMGKSK-KDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDV 347 (457)
T ss_dssp CCSSCCGGGGGGSHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTCSCHHH
T ss_pred cccCchHHHHHhCcchHHHHHHHHhhcC-CHHHHHHHHHHHHHhccCcCcchHHHHHHHHHHcCCchHHHHHHhCCCHhH
Confidence 112344566788999999998864 45789999999999997532 21334446899999999999999999
Q ss_pred HHHHHHHHHHhcccCcHHHHHHHHHcCChHHHHHHhhhCC------HHHHHHHHHHHHHhhcCChh---hhhhhhhHHHH
Q 017249 253 TQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGT------FEAQERARTLLDLLRDTPQE---KRLSSSVLEKI 323 (375)
Q Consensus 253 ~~~a~~~L~~l~~~~~~~~~~~l~~~g~v~~L~~ll~~~~------~~~~~~A~~~L~~l~~~~~~---~~~~~g~~~~l 323 (375)
+..|+|+|.|++.+. +.+. ++..|++++|++++..++ +++...+.++|.++....++ .+.+.|++++|
T Consensus 348 ~~~A~~aL~nls~~~--~~~~-~i~~~~i~~Lv~lL~~~~~~~~~~~~v~~~~l~~l~ni~~~~~~~~~~i~~~g~l~~L 424 (457)
T 1xm9_A 348 VRSGASLLSNMSRHP--LLHR-VMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNI 424 (457)
T ss_dssp HHHHHHHHHHHHTSG--GGHH-HHHHHTHHHHHHTTTSCCSCSTTHHHHHHHHHHHHHHHHTTCTHHHHHHCCHHHHHHH
T ss_pred HHHHHHHHHHHhcCH--HHHH-HHHHhhhHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHH
Confidence 999999999998864 4444 455689999999998764 36888999999999765533 67789999999
Q ss_pred HHHHhhcCCC-hHHHHHHHHHHHHHHH
Q 017249 324 VYDIAARVDG-ADKAAETAKRLLQDMV 349 (375)
Q Consensus 324 ~~~l~~~~~g-~~~~~~~a~~~l~~l~ 349 (375)
+..+. .+ +++++++|..+|.++.
T Consensus 425 ~~L~~---~~~~~~i~~~A~~~L~~~~ 448 (457)
T 1xm9_A 425 INLCR---SSASPKAAEAARLLLSDMW 448 (457)
T ss_dssp HHHHH---CTTCHHHHHHHHHHHHTTS
T ss_pred HHHHc---CCCcHHHHHHHHHHHHHHH
Confidence 98775 34 6899999999999875
No 12
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=100.00 E-value=1.9e-33 Score=273.24 Aligned_cols=340 Identities=17% Similarity=0.181 Sum_probs=277.9
Q ss_pred hhhhHHHHHhhHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhh-CChhhHHHHHhcCChHHHHHhhCC-CCHHHHHHHHH
Q 017249 13 DQEEEAWNQRKQALIEELSDKLINGDLETKIEAARDIRKVVKK-SSLKTRSEFAAAGVVQPLVLMLVS-PNLDAIESSLL 90 (375)
Q Consensus 13 ~~~~~~~~~~~~~~l~~Lv~~L~s~~~~~~~~a~~~l~~l~~~-~~~~~~~~~~~~g~v~~Lv~~L~~-~~~~~~~~a~~ 90 (375)
.+.+++..+...|+||.||.+|++++++++..|+++|.+++.+ + ++++..+++.|+|+.|+.+|++ .+.++++.++.
T Consensus 78 ~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~-~~nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~ 156 (584)
T 3l6x_A 78 RNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRD-QDNKIAIKNCDGVPALVRLLRKARDMDLTEVITG 156 (584)
T ss_dssp TCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSC-HHHHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHH
T ss_pred CChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCC-HHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHH
Confidence 4667888899999999999999999999999999999999986 4 6899999999999999999987 67899999999
Q ss_pred HHHHhhccChhhHHHHHHcCChHHHHHhhc------------------CCChHHHHHHHHHHHHhhccCC-ChhHHHh-c
Q 017249 91 ALLNLAVRNERNKVKIATAGAIPPLVELLK------------------FQNGTLRELAAAAILTLSAAAP-NKPAIAA-S 150 (375)
Q Consensus 91 ~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~------------------~~~~~~~~~a~~~L~~Ls~~~~-~~~~i~~-~ 150 (375)
+|.+|+. +++++..+++ +++|+|++++. ..++.+++.|+++|.||+.+.+ ++..+.. .
T Consensus 157 aL~nLS~-~~~~k~~I~~-~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~ 234 (584)
T 3l6x_A 157 TLWNLSS-HDSIKMEIVD-HALHALTDEVIIPHSGWEREPNEDCKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECD 234 (584)
T ss_dssp HHHHHTT-SGGGHHHHHH-HTHHHHHHHTHHHHHCCC----------CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHST
T ss_pred HHHHHhC-CchhhHHHHh-ccHHHHHHHHhcccccccccccccccccccccHHHHHHHHHHHHHHhcCCHHHHHHHHHcC
Confidence 9999998 6889999996 57999999871 2257999999999999998875 4787776 4
Q ss_pred CChHHHHHHhcc------CCHHHHHHHHHHHHHhccCC--------------------------CCchhhhhcCCcHHHH
Q 017249 151 GAAPLLVQILHS------GSVQGRVDAVTALHYLSTCK--------------------------ENSSPILDATAVPPLI 198 (375)
Q Consensus 151 ~~l~~L~~lL~~------~~~~~~~~a~~~L~~L~~~~--------------------------~~~~~i~~~g~i~~Lv 198 (375)
|+++.|+.+|++ .+...++.|+++|+||+... .....+...++++.|+
T Consensus 235 Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll 314 (584)
T 3l6x_A 235 GLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYI 314 (584)
T ss_dssp THHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC--------------CCCCGGGGGGSHHHHHHHH
T ss_pred CcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhhhhhhcccccccccccCchhHHHHhcccHHHHHH
Confidence 667899999975 46688999999999999651 1112233445677889
Q ss_pred HHhhhcccchHHHHHHHHHHHHhhCCh----hhhHHHhhccCcHHHHHHHhccCChHHHHHHHHHHHHhcccCcHHHHHH
Q 017249 199 NLLKDCKKYSKFAEKATALLEILSSSE----EGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQL 274 (375)
Q Consensus 199 ~ll~~~~~~~~~~~~a~~~L~~l~~~~----~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~ 274 (375)
.++..+. ...+++.|+++|+|||.+. ...+.++.+.++++.|+.+|.++++.++..|+++|.||+.+.. .+..
T Consensus 315 ~LL~~s~-~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~LL~s~~~~v~~~A~~aL~nLs~~~~--~~~~ 391 (584)
T 3l6x_A 315 SLLKESK-TPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEHERVVKAASGALRNLAVDAR--NKEL 391 (584)
T ss_dssp HHHHHCC-CHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCS--CHHH
T ss_pred HHHccCC-CHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhCChh--HHHH
Confidence 9997654 4578999999999998653 2223345467999999999999999999999999999998763 3444
Q ss_pred HHHcCChHHHHHHhhhC--------CHHHHHHHHHHHHHhhcCChh---hhhhhhhHHHHHHHHhhcCCChHHHHHHHHH
Q 017249 275 ILKEGAIPGLLRLTVEG--------TFEAQERARTLLDLLRDTPQE---KRLSSSVLEKIVYDIAARVDGADKAAETAKR 343 (375)
Q Consensus 275 l~~~g~v~~L~~ll~~~--------~~~~~~~A~~~L~~l~~~~~~---~~~~~g~~~~l~~~l~~~~~g~~~~~~~a~~ 343 (375)
+..|+++.|+.++.++ +..+...|+++|.+|....+. .+.+.|+++.|+..+.++. ..+++++.|..
T Consensus 392 -I~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~~~~~~I~~~g~I~~Lv~LL~s~~-~~~~v~k~Aa~ 469 (584)
T 3l6x_A 392 -IGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLEAAKKLRETQGIEKLVLINKSGN-RSEKEVRAAAL 469 (584)
T ss_dssp -HHHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTCSS-SCHHHHHHHHH
T ss_pred -HHhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCC-CChHHHHHHHH
Confidence 4789999999999876 467899999999999765532 6788999999998886322 25899999999
Q ss_pred HHHHHHHHHHHHhHHHHHHH
Q 017249 344 LLQDMVQRSMELSMTRIQQR 363 (375)
Q Consensus 344 ~l~~l~~~s~~~~~~~~~~~ 363 (375)
+|.+|.. +++..+++++
T Consensus 470 vL~nl~~---~~elr~~~kk 486 (584)
T 3l6x_A 470 VLQTIWG---YKELRKPLEK 486 (584)
T ss_dssp HHHHHHT---SHHHHHHHHT
T ss_pred HHHHHHc---CHHHHHHHHH
Confidence 9999974 4455555554
No 13
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=100.00 E-value=1.3e-32 Score=270.04 Aligned_cols=323 Identities=20% Similarity=0.200 Sum_probs=285.1
Q ss_pred hHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCCCC-HHHHHHHHHHHHHhhccChh
Q 017249 23 KQALIEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPN-LDAIESSLLALLNLAVRNER 101 (375)
Q Consensus 23 ~~~~l~~Lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~~~-~~~~~~a~~~L~~L~~~~~~ 101 (375)
....++.|+..|.+++++.+..|++.|.+++..........+++.|+++.|+++|.+++ +.++..|+++|.+++.++++
T Consensus 72 ~~~~l~~lv~~L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~ 151 (528)
T 4b8j_A 72 KLESLPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSE 151 (528)
T ss_dssp ---CHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHH
T ss_pred hHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHH
Confidence 35569999999999999999999999999987762367888999999999999999887 99999999999999998899
Q ss_pred hHHHHHHcCChHHHHHhhcCCChHHHHHHHHHHHHhhccCC-ChhHHHhcCChHHHHHHh-ccCCHHHHHHHHHHHHHhc
Q 017249 102 NKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAP-NKPAIAASGAAPLLVQIL-HSGSVQGRVDAVTALHYLS 179 (375)
Q Consensus 102 ~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~-~~~~i~~~~~l~~L~~lL-~~~~~~~~~~a~~~L~~L~ 179 (375)
++..+++.|+++.|+.+|.++++.++..|+++|.+|+.+.+ .+..+...|+++.|+.+| .+.+..++..++++|.+|+
T Consensus 152 ~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~ 231 (528)
T 4b8j_A 152 NTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFC 231 (528)
T ss_dssp HHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999998754 577788889999999999 6678999999999999999
Q ss_pred cCCCCchhhhhcCCcHHHHHHhhhcccchHHHHHHHHHHHHhhCChhhhHHHhhccCcHHHHHHHhccCChHHHHHHHHH
Q 017249 180 TCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGA 259 (375)
Q Consensus 180 ~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~ 259 (375)
...+........|+++.|+.++.+. +..++..++++|.+++..+..+...+.+.|+++.|+.+|.++++.++..|+++
T Consensus 232 ~~~~~~~~~~~~~~l~~L~~lL~~~--~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~ 309 (528)
T 4b8j_A 232 RGKPQPSFEQTRPALPALARLIHSN--DEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRT 309 (528)
T ss_dssp CSSSCCCHHHHTTHHHHHHHHTTCC--CHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHH
T ss_pred cCCCCCcHHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHH
Confidence 8765555556689999999999876 45788999999999998766665444478999999999999999999999999
Q ss_pred HHHhcccCcHHHHHHHHHcCChHHHHHHhhhC-CHHHHHHHHHHHHHhhcCChh---hhhhhhhHHHHHHHHhhcCCChH
Q 017249 260 LLSLCQSCRDKYRQLILKEGAIPGLLRLTVEG-TFEAQERARTLLDLLRDTPQE---KRLSSSVLEKIVYDIAARVDGAD 335 (375)
Q Consensus 260 L~~l~~~~~~~~~~~l~~~g~v~~L~~ll~~~-~~~~~~~A~~~L~~l~~~~~~---~~~~~g~~~~l~~~l~~~~~g~~ 335 (375)
|++++.+. +.....+++.|+++.|+.++.++ ++.+++.|+++|.+++...+. .++..|+++.|+..|. ++++
T Consensus 310 L~nl~~~~-~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i~~L~~lL~---~~~~ 385 (528)
T 4b8j_A 310 VGNIVTGD-DAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQ---TAEF 385 (528)
T ss_dssp HHHHTTSC-HHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTCHHHHHHHHH---HSCH
T ss_pred HHHHHcCC-HHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHh---cCCH
Confidence 99999977 56778888999999999999988 999999999999999986643 5667899999999886 3458
Q ss_pred HHHHHHHHHHHHHHHH
Q 017249 336 KAAETAKRLLQDMVQR 351 (375)
Q Consensus 336 ~~~~~a~~~l~~l~~~ 351 (375)
..+..|..+|.++...
T Consensus 386 ~v~~~a~~aL~nl~~~ 401 (528)
T 4b8j_A 386 DIKKEAAWAISNATSG 401 (528)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcC
Confidence 9999999999999866
No 14
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=100.00 E-value=3.2e-34 Score=272.86 Aligned_cols=265 Identities=21% Similarity=0.234 Sum_probs=235.1
Q ss_pred HHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCC-----------CCHHHHHHHHHHHHHhhccChhhHHHHHHc-CC
Q 017249 44 EAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVS-----------PNLDAIESSLLALLNLAVRNERNKVKIATA-GA 111 (375)
Q Consensus 44 ~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~-----------~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~-g~ 111 (375)
.|+++|.+++.+. ++|+.+++.|++++|+.+|.. .++.++..|+++|.||+.+++.++..+... |+
T Consensus 167 qAv~aL~nls~~~--e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~Ga 244 (458)
T 3nmz_A 167 PAVCVLMKLSFDE--EHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGC 244 (458)
T ss_dssp HHHHHHHHHTTSH--HHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHHH
T ss_pred HHHHHHHHhcCCH--HHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcCCc
Confidence 8999999997665 999999999999999999942 246789999999999999887788888764 55
Q ss_pred hHHHHHhhcCCChHHHHHHHHHHHHhhcc--CCChhHHHhcCChHHHHHHh-ccCCHHHHHHHHHHHHHhcc-CCCCchh
Q 017249 112 IPPLVELLKFQNGTLRELAAAAILTLSAA--APNKPAIAASGAAPLLVQIL-HSGSVQGRVDAVTALHYLST-CKENSSP 187 (375)
Q Consensus 112 i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~--~~~~~~i~~~~~l~~L~~lL-~~~~~~~~~~a~~~L~~L~~-~~~~~~~ 187 (375)
+|+|+.+|.++++++++.|+++|+||+.. ++++..+.+.|+++.|+++| .+++..++..++.+|+||+. .++++..
T Consensus 245 Ip~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~ 324 (458)
T 3nmz_A 245 MRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKAD 324 (458)
T ss_dssp HHHHHHGGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHH
Confidence 99999999999999999999999999985 34788888999999999975 56788999999999999998 6678888
Q ss_pred hh-hcCCcHHHHHHhhhcccch--HHHHHHHHHHHHhhC----ChhhhHHHhhccCcHHHHHHHhccCChHHHHHHHHHH
Q 017249 188 IL-DATAVPPLINLLKDCKKYS--KFAEKATALLEILSS----SEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGAL 260 (375)
Q Consensus 188 i~-~~g~i~~Lv~ll~~~~~~~--~~~~~a~~~L~~l~~----~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L 260 (375)
++ ..|+++.|+.++.+.++.. .+++.++++|+||+. +++++..+. +.|+++.|+.+|.+++..+++.|+++|
T Consensus 325 I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~-~~G~i~~Lv~LL~~~~~~v~~~A~~aL 403 (458)
T 3nmz_A 325 ICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILR-ENNCLQTLLQHLKSHSLTIVSNACGTL 403 (458)
T ss_dssp HHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHH-HTTHHHHHHHHSSCSCHHHHHHHHHHH
T ss_pred HHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHH-HcccHHHHHHHHcCCChHHHHHHHHHH
Confidence 87 7899999999998764321 478889999999995 778887777 689999999999999999999999999
Q ss_pred HHhcccCcHHHHHHHHHcCChHHHHHHhhhCCHHHHHHHHHHHHHhhcCChh
Q 017249 261 LSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDTPQE 312 (375)
Q Consensus 261 ~~l~~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~~ 312 (375)
+|++..+ ++.+..+++.|+++.|+.++.++++.+++.|+++|.+|..+.+.
T Consensus 404 ~nLa~~~-~~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~~p~ 454 (458)
T 3nmz_A 404 WNLSARN-PKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPA 454 (458)
T ss_dssp HHHHSSC-HHHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTCCSC
T ss_pred HHHHcCC-HHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCHh
Confidence 9999765 57899999999999999999999999999999999999987754
No 15
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=100.00 E-value=9.4e-32 Score=263.97 Aligned_cols=327 Identities=15% Similarity=0.170 Sum_probs=288.4
Q ss_pred HHHhhHhHHHHHHHHhcCC-CHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhc
Q 017249 19 WNQRKQALIEELSDKLING-DLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIESSLLALLNLAV 97 (375)
Q Consensus 19 ~~~~~~~~l~~Lv~~L~s~-~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~~~~~~~~~a~~~L~~L~~ 97 (375)
..+...+.++.|+.+|.++ ++.++..|+++|.+++.+. ++.+..+++.|+++.|+.+|.+++++++..|+++|.+++.
T Consensus 124 ~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~-~~~~~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~ 202 (530)
T 1wa5_B 124 DVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGT-SAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAG 202 (530)
T ss_dssp HHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSC-HHHHHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCC-HHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence 3455678999999999987 8999999999999999988 7888889999999999999999999999999999999999
Q ss_pred cChhhHHHHHHcCChHHHHHhhcCCChHHHHHHHHHHHHhhccC-CChhHHHhcCChHHHHHHhccCCHHHHHHHHHHHH
Q 017249 98 RNERNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAA-PNKPAIAASGAAPLLVQILHSGSVQGRVDAVTALH 176 (375)
Q Consensus 98 ~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~-~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~ 176 (375)
+++.++..+...|+++.|+.++.+.++.++..++++|.+|+.+. +........++++.|+.+|.+++..++..++++|.
T Consensus 203 ~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~ 282 (530)
T 1wa5_B 203 DSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAIS 282 (530)
T ss_dssp TCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHH
T ss_pred CCccchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 88899999999999999999999999999999999999999876 55555566899999999999999999999999999
Q ss_pred HhccCC-CCchhhhhcCCcHHHHHHhhhcccchHHHHHHHHHHHHhhCC-hhhhHHHhhccCcHHHHHHHhccCChHHHH
Q 017249 177 YLSTCK-ENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSS-EEGRIAITNSDGGILTLVETVEDGSLVSTQ 254 (375)
Q Consensus 177 ~L~~~~-~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~ 254 (375)
+|+... +....+++.|+++.|+.++.+. +..++..++++|++++.. +.....++ +.|+++.|+.+|.++++.++.
T Consensus 283 ~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~--~~~v~~~a~~~L~~l~~~~~~~~~~~~-~~~~l~~L~~lL~~~~~~vr~ 359 (530)
T 1wa5_B 283 YLSDGPQEAIQAVIDVRIPKRLVELLSHE--STLVQTPALRAVGNIVTGNDLQTQVVI-NAGVLPALRLLLSSPKENIKK 359 (530)
T ss_dssp HHHSSCHHHHHHHHHTTCHHHHHHGGGCS--CHHHHHHHHHHHHHHTTSCHHHHHHHH-HTTHHHHHHHHTTCSCHHHHH
T ss_pred HHhCCCHHHHHHHHhcCcHHHHHHHHCCC--ChhhHHHHHHHHHHHHcCCHHHHHHHH-HcchHHHHHHHHcCCCHHHHH
Confidence 999764 4567777889999999999875 457889999999999975 44455555 689999999999999999999
Q ss_pred HHHHHHHHhcccCcHHHHHHHHHcCChHHHHHHhhhCCHHHHHHHHHHHHHhhcCC-h--h---hhhhhhhHHHHHHHHh
Q 017249 255 HAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDTP-Q--E---KRLSSSVLEKIVYDIA 328 (375)
Q Consensus 255 ~a~~~L~~l~~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~~~~~A~~~L~~l~~~~-~--~---~~~~~g~~~~l~~~l~ 328 (375)
.|+++|.+++.+. ++....+++.|+++.|+.++.++++.+++.|+++|.+++... + . .+++.|+++.|+..|.
T Consensus 360 ~A~~aL~~l~~~~-~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~ 438 (530)
T 1wa5_B 360 EACWTISNITAGN-TEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLE 438 (530)
T ss_dssp HHHHHHHHHTTSC-HHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTT
T ss_pred HHHHHHHHHHcCC-HHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHCCCHHHHHHHHh
Confidence 9999999999876 466777889999999999999999999999999999997642 2 2 5677899999998775
Q ss_pred hcCCChHHHHHHHHHHHHHHHHHHH
Q 017249 329 ARVDGADKAAETAKRLLQDMVQRSM 353 (375)
Q Consensus 329 ~~~~g~~~~~~~a~~~l~~l~~~s~ 353 (375)
++.+..+..|..+|.+|.....
T Consensus 439 ---~~~~~v~~~al~aL~~l~~~~~ 460 (530)
T 1wa5_B 439 ---IADNRIIEVTLDALENILKMGE 460 (530)
T ss_dssp ---TCCHHHHHHHHHHHHHHHHHHH
T ss_pred ---CCCHHHHHHHHHHHHHHHHhhh
Confidence 4458999999999999986544
No 16
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=100.00 E-value=3.5e-33 Score=279.97 Aligned_cols=319 Identities=18% Similarity=0.184 Sum_probs=272.4
Q ss_pred hHHHHHHHHhcCC--CHHHHHHHHHHHHHHHhhCChhhHHHHH-hcCChHHHHHhhCCCCHHHHHHHHHHHHHhhccCh-
Q 017249 25 ALIEELSDKLING--DLETKIEAARDIRKVVKKSSLKTRSEFA-AAGVVQPLVLMLVSPNLDAIESSLLALLNLAVRNE- 100 (375)
Q Consensus 25 ~~l~~Lv~~L~s~--~~~~~~~a~~~l~~l~~~~~~~~~~~~~-~~g~v~~Lv~~L~~~~~~~~~~a~~~L~~L~~~~~- 100 (375)
..++.|+++|.++ +++++..|++.|..++.+. ..+..++ +.|+++.|+++|++++..++..++++|.||+.+.+
T Consensus 377 ~Lv~~l~~lL~~~~~d~~v~~~AveaLayLS~~~--~vk~~lv~d~g~Ip~LV~LL~s~d~~i~~~al~~L~NLt~~~d~ 454 (810)
T 3now_A 377 KLAEACRRFLIKPGKDKDIRRWAADGLAYLTLDA--ECKEKLIEDKASIHALMDLARGGNQSCLYGVVTTFVNLCNAYEK 454 (810)
T ss_dssp HHHHHHHHHHHCSSCCSSHHHHHHHHHHHHTTSH--HHHHHHHHCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTTCSCC
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCc--HHHHHHHHccchHHHHHHHhCCCChHHHHHHHHHHHHHcCCchh
Confidence 4577788888877 8999999999999999987 6666666 56999999999999999999999999999998542
Q ss_pred ----------------------------hhH---HHHHHcCChHHHHHhhcCCChHHHHHHHHHHHHhhccCCChhHHHh
Q 017249 101 ----------------------------RNK---VKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAA 149 (375)
Q Consensus 101 ----------------------------~~r---~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~ 149 (375)
.++ ..+++.|++|.|+.+|+++++.+++.|+++|.|++.+++++..+..
T Consensus 455 q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~d~~~r~~Vv~ 534 (810)
T 3now_A 455 QEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTESHNSQELIARVLNAVCGLKELRGKVVQ 534 (810)
T ss_dssp CCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTCCCHHHHHHHHHHHHHHHTSHHHHHHHHH
T ss_pred hhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 123 6788999999999999999999999999999999988778999999
Q ss_pred cCChHHHHHHhccCCHHHHHHHHHHHHHhccCCCCchhh---hhcCCcHHHHHHhhhcccchHHHHHHHHHHHHhhCC-h
Q 017249 150 SGAAPLLVQILHSGSVQGRVDAVTALHYLSTCKENSSPI---LDATAVPPLINLLKDCKKYSKFAEKATALLEILSSS-E 225 (375)
Q Consensus 150 ~~~l~~L~~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i---~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~~-~ 225 (375)
.|++++|+.+|.+++...+..|+++|.+|+.+.+....+ ...|++++|+.+|.++. ....+..|+++|.||+.. +
T Consensus 535 ~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~aIppLv~LL~~~~-~~l~~~eAl~AL~NLa~~~d 613 (810)
T 3now_A 535 EGGVKALLRMALEGTEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDC-TALENFESLMALTNLASMNE 613 (810)
T ss_dssp TTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHTTTHHHHHTHHHHHHTTSTTS-CHHHHHHHHHHHHHHTTSCH
T ss_pred CCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCChhhhhcchhhhcHHHHHHHHhCCCC-cHHHHHHHHHHHHHHhcCCH
Confidence 999999999999999999999999999998653322221 12469999999998542 323345799999999987 5
Q ss_pred hhhHHHhhccCcHHHHHHHhccCChHHHHHHHHHHHHhcccCcHHHHHHHHH-cCChHHHHHHhhhCCHHHHHHHHHHHH
Q 017249 226 EGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILK-EGAIPGLLRLTVEGTFEAQERARTLLD 304 (375)
Q Consensus 226 ~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~-~g~v~~L~~ll~~~~~~~~~~A~~~L~ 304 (375)
+.+..++ +.|+++.|+.+|.++++.++..|+++|+|++.+. +.+..+.+ .|.++.|+.++.+.+..+|+.|+++|+
T Consensus 614 ~~~~~Ii-~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~~--~~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALa 690 (810)
T 3now_A 614 SVRQRII-KEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSE--DVIKMFEGNNDRVKFLALLCEDEDEETATACAGALA 690 (810)
T ss_dssp HHHHHHH-HTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTSH--HHHHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHH
T ss_pred HHHHHHH-HcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCh--HHHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 6677777 6899999999999999999999999999999875 55666775 789999999999999999999999999
Q ss_pred HhhcC-Ch--hhhhh-hhhHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHH
Q 017249 305 LLRDT-PQ--EKRLS-SSVLEKIVYDIAARVDGADKAAETAKRLLQDMVQRS 352 (375)
Q Consensus 305 ~l~~~-~~--~~~~~-~g~~~~l~~~l~~~~~g~~~~~~~a~~~l~~l~~~s 352 (375)
+++.. .. +.++. .|++++|+..|. +++.+.+..|..++.++...+
T Consensus 691 nLt~~s~~~~~~ii~~~g~I~~Lv~LL~---s~d~~vq~~A~~aL~NL~~~s 739 (810)
T 3now_A 691 IITSVSVKCCEKILAIASWLDILHTLIA---NPSPAVQHRGIVIILNMINAG 739 (810)
T ss_dssp HHHHHCHHHHHHHHTSTTHHHHHHHHHT---CSSHHHHHHHHHHHHHHHTTC
T ss_pred HHhCCCHHHHHHHHHHcCCHHHHHHHHC---CCCHHHHHHHHHHHHHHHhCC
Confidence 99984 32 25677 899999998885 577999999999999998654
No 17
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=100.00 E-value=2.1e-31 Score=261.44 Aligned_cols=323 Identities=17% Similarity=0.162 Sum_probs=283.9
Q ss_pred hHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCCC-CHHHHHHHHHHHHHhhccChh
Q 017249 23 KQALIEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSP-NLDAIESSLLALLNLAVRNER 101 (375)
Q Consensus 23 ~~~~l~~Lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~~-~~~~~~~a~~~L~~L~~~~~~ 101 (375)
..+.++.|+..|++++++.+..|++.|.+++.......+..+++.|+++.|+++|.++ ++.++..|+++|.+++.++++
T Consensus 85 ~~~~i~~lv~~L~s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~ 164 (530)
T 1wa5_B 85 LQQELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSA 164 (530)
T ss_dssp --CCHHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHH
T ss_pred hHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHH
Confidence 4567999999999999999999999999997653235667788999999999999997 899999999999999998888
Q ss_pred hHHHHHHcCChHHHHHhhcCCChHHHHHHHHHHHHhhccC-CChhHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhcc
Q 017249 102 NKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAA-PNKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLST 180 (375)
Q Consensus 102 ~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~-~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~~L~~ 180 (375)
.+..++..|+++.|+.+|.++++.+++.|+++|++++.+. +.+..+...|+++.|+.+|.+.+..++..++++|.+|+.
T Consensus 165 ~~~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~ 244 (530)
T 1wa5_B 165 QTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCR 244 (530)
T ss_dssp HHHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999875 467777888999999999999999999999999999997
Q ss_pred CC-CCchhhhhcCCcHHHHHHhhhcccchHHHHHHHHHHHHhhCC-hhhhHHHhhccCcHHHHHHHhccCChHHHHHHHH
Q 017249 181 CK-ENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSS-EEGRIAITNSDGGILTLVETVEDGSLVSTQHAVG 258 (375)
Q Consensus 181 ~~-~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~ 258 (375)
.. +........++++.|+.++.++ +..++..++++|.+|+.. ++....++ +.|+++.|+.+|.++++.++..|++
T Consensus 245 ~~~~~~~~~~~~~~l~~L~~lL~~~--d~~v~~~a~~~L~~L~~~~~~~~~~~~-~~~~v~~Lv~lL~~~~~~v~~~a~~ 321 (530)
T 1wa5_B 245 GKKPQPDWSVVSQALPTLAKLIYSM--DTETLVDACWAISYLSDGPQEAIQAVI-DVRIPKRLVELLSHESTLVQTPALR 321 (530)
T ss_dssp CSSSCCCHHHHGGGHHHHHHHTTCC--CHHHHHHHHHHHHHHHSSCHHHHHHHH-HTTCHHHHHHGGGCSCHHHHHHHHH
T ss_pred CCCCCCcHHHHHhHHHHHHHHHcCC--CHHHHHHHHHHHHHHhCCCHHHHHHHH-hcCcHHHHHHHHCCCChhhHHHHHH
Confidence 75 5556666789999999999876 457889999999999976 45556666 6899999999999999999999999
Q ss_pred HHHHhcccCcHHHHHHHHHcCChHHHHHHhhhCCHHHHHHHHHHHHHhhcCChh---hhhhhhhHHHHHHHHhhcCCChH
Q 017249 259 ALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDTPQE---KRLSSSVLEKIVYDIAARVDGAD 335 (375)
Q Consensus 259 ~L~~l~~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~~---~~~~~g~~~~l~~~l~~~~~g~~ 335 (375)
+|.+++.+. +.....+++.|+++.|+.++.++++.+++.|+++|.+++...+. .++..|+++.|+..|. ++.+
T Consensus 322 ~L~~l~~~~-~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~lL~---~~~~ 397 (530)
T 1wa5_B 322 AVGNIVTGN-DLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLE---VAEY 397 (530)
T ss_dssp HHHHHTTSC-HHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHH---HSCH
T ss_pred HHHHHHcCC-HHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHh---cCCH
Confidence 999999887 46677788899999999999999999999999999999986643 4567899999999886 4558
Q ss_pred HHHHHHHHHHHHHHHHH
Q 017249 336 KAAETAKRLLQDMVQRS 352 (375)
Q Consensus 336 ~~~~~a~~~l~~l~~~s 352 (375)
..+..|..+|.+|...+
T Consensus 398 ~v~~~a~~aL~~l~~~~ 414 (530)
T 1wa5_B 398 KTKKEACWAISNASSGG 414 (530)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhcC
Confidence 99999999999998653
No 18
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=100.00 E-value=4.2e-31 Score=253.55 Aligned_cols=320 Identities=17% Similarity=0.174 Sum_probs=280.9
Q ss_pred hHHHHHHHHhcCC-CHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhccChhhH
Q 017249 25 ALIEELSDKLING-DLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIESSLLALLNLAVRNERNK 103 (375)
Q Consensus 25 ~~l~~Lv~~L~s~-~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~~~~~~~~~a~~~L~~L~~~~~~~r 103 (375)
+.++.|+..|+++ ++.++..|+++|.+++.+. ++....+++.|+++.|+++|++++++++..|+++|.+++.+++.++
T Consensus 64 ~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~-~~~~~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~ 142 (450)
T 2jdq_A 64 GVVARFVEFLKRKENCTLQFESAWVLTNIASGN-SLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCR 142 (450)
T ss_dssp THHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSC-HHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred CcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCC-HHHHHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHH
Confidence 8999999999988 8999999999999999987 6777888899999999999999999999999999999999888899
Q ss_pred HHHHHcCChHHHHHhhcC-CChHHHHHHHHHHHHhhccC-C-ChhHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhcc
Q 017249 104 VKIATAGAIPPLVELLKF-QNGTLRELAAAAILTLSAAA-P-NKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLST 180 (375)
Q Consensus 104 ~~i~~~g~i~~Lv~lL~~-~~~~~~~~a~~~L~~Ls~~~-~-~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~~L~~ 180 (375)
..+.+.|+++.|+.++.+ .++.++..++++|.+++... + .+..+ ..++++.|++++.+++..++..++++|.+|+.
T Consensus 143 ~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~-~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~ 221 (450)
T 2jdq_A 143 DYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAK-VSPCLNVLSWLLFVSDTDVLADACWALSYLSD 221 (450)
T ss_dssp HHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCCCGGG-TGGGHHHHHHHTTCCCHHHHHHHHHHHHHHTS
T ss_pred HHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCCCHHH-HHHHHHHHHHHHccCCHHHHHHHHHHHHHHHC
Confidence 999999999999999996 68999999999999999764 3 23333 37899999999999999999999999999997
Q ss_pred CC-CCchhhhhcCCcHHHHHHhhhcccchHHHHHHHHHHHHhhCChhhhH-HHhhccCcHHHHHHHhccCChHHHHHHHH
Q 017249 181 CK-ENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRI-AITNSDGGILTLVETVEDGSLVSTQHAVG 258 (375)
Q Consensus 181 ~~-~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~~~~~~~-~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~ 258 (375)
.. +....+...|+++.|+.++.+. +..++..++++|++++...+... .++ +.|+++.|+.+|.++++.++..|++
T Consensus 222 ~~~~~~~~~~~~~~i~~L~~ll~~~--~~~v~~~a~~~L~~l~~~~~~~~~~~~-~~~~l~~L~~ll~~~~~~vr~~a~~ 298 (450)
T 2jdq_A 222 GPNDKIQAVIDAGVCRRLVELLMHN--DYKVVSPALRAVGNIVTGDDIQTQVIL-NCSALQSLLHLLSSPKESIKKEACW 298 (450)
T ss_dssp SSHHHHHHHHHTTTHHHHHHHTTCS--CHHHHHHHHHHHHHHTTSCHHHHHHHH-TTTHHHHHHHHTTCSSHHHHHHHHH
T ss_pred CCcHHHHHHHHcCcHHHHHHHHCCC--chhHHHHHHHHHHHHhhCChHHHHHHH-HCccHHHHHHHHcCCCHHHHHHHHH
Confidence 64 5566777889999999999865 45788999999999998655544 455 6799999999999999999999999
Q ss_pred HHHHhcccCcHHHHHHHHHcCChHHHHHHhhhCCHHHHHHHHHHHHHhhcC-Chh---hhhhhhhHHHHHHHHhhcCCCh
Q 017249 259 ALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDT-PQE---KRLSSSVLEKIVYDIAARVDGA 334 (375)
Q Consensus 259 ~L~~l~~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~~~~~A~~~L~~l~~~-~~~---~~~~~g~~~~l~~~l~~~~~g~ 334 (375)
+|.+++.+. ++..+.+++.|+++.|+.++.++++.+|+.|+++|.+++.. .+. .++..|+++.|+..+. +++
T Consensus 299 ~L~~l~~~~-~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~---~~~ 374 (450)
T 2jdq_A 299 TISNITAGN-RAQIQTVIDANIFPALISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLT---VMD 374 (450)
T ss_dssp HHHHHTTSC-HHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHTCHHHHHHGGG---SSC
T ss_pred HHHHHHcCC-HHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHhc---CCC
Confidence 999999876 46677788899999999999999999999999999999864 322 4667899999998885 445
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 017249 335 DKAAETAKRLLQDMVQRSM 353 (375)
Q Consensus 335 ~~~~~~a~~~l~~l~~~s~ 353 (375)
++.+..|..+|.+|.....
T Consensus 375 ~~v~~~a~~aL~~l~~~~~ 393 (450)
T 2jdq_A 375 SKIVQVALNGLENILRLGE 393 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhch
Confidence 8999999999999986544
No 19
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=100.00 E-value=3.6e-32 Score=251.46 Aligned_cols=265 Identities=20% Similarity=0.200 Sum_probs=228.3
Q ss_pred HHHHHHHHHHHHHhhccChhhHHHHHHcCChHHHHHhhcC-----------CChHHHHHHHHHHHHhhccCC-ChhHHHh
Q 017249 82 LDAIESSLLALLNLAVRNERNKVKIATAGAIPPLVELLKF-----------QNGTLRELAAAAILTLSAAAP-NKPAIAA 149 (375)
Q Consensus 82 ~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~-----------~~~~~~~~a~~~L~~Ls~~~~-~~~~i~~ 149 (375)
...+..|+++|.+++.+ +++|..+++.|++++|+.+|.+ .++.+++.|+++|.||+..++ ++..+..
T Consensus 46 ~~~~~~A~~aL~nls~d-~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~ 124 (354)
T 3nmw_A 46 EHQICPAVCVLMKLSFD-EEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCS 124 (354)
T ss_dssp GGTHHHHHHHHHHHHTS-HHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCC-HHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 35566899999999994 8999999999999999999952 247789999999999998765 6666654
Q ss_pred -cCChHHHHHHhccCCHHHHHHHHHHHHHhccC--CCCchhhhhcCCcHHHHHHhhhcccchHHHHHHHHHHHHhhC-Ch
Q 017249 150 -SGAAPLLVQILHSGSVQGRVDAVTALHYLSTC--KENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSS-SE 225 (375)
Q Consensus 150 -~~~l~~L~~lL~~~~~~~~~~a~~~L~~L~~~--~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~-~~ 225 (375)
.|+++.|+++|+++++.++..|+++|.||+.. ++++..+++.|+++.|+++|.++. +..+++.++++|+||+. ++
T Consensus 125 ~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~-~~~~~~~A~~aL~nLs~~~~ 203 (354)
T 3nmw_A 125 MKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVK-KESTLKSVLSALWNLSAHCT 203 (354)
T ss_dssp CHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHTTCH
T ss_pred cCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCC-CHHHHHHHHHHHHHHHccCh
Confidence 45699999999999999999999999999975 467888999999999999865533 44678899999999998 77
Q ss_pred hhhHHHhhccCcHHHHHHHhccCCh----HHHHHHHHHHHHhcc---cCcHHHHHHHHHcCChHHHHHHhhhCCHHHHHH
Q 017249 226 EGRIAITNSDGGILTLVETVEDGSL----VSTQHAVGALLSLCQ---SCRDKYRQLILKEGAIPGLLRLTVEGTFEAQER 298 (375)
Q Consensus 226 ~~~~~~~~~~g~v~~Lv~lL~~~~~----~~~~~a~~~L~~l~~---~~~~~~~~~l~~~g~v~~L~~ll~~~~~~~~~~ 298 (375)
+++..+....|+++.|+.+|.++++ .+++.|+++|+|++. .. ++.+..+.+.|+++.|+.++.++++.+++.
T Consensus 204 ~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~-~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~ 282 (354)
T 3nmw_A 204 ENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATN-EDHRQILRENNCLQTLLQHLKSHSLTIVSN 282 (354)
T ss_dssp HHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTC-HHHHHHHHTTTHHHHHHHHTTCSCHHHHHH
T ss_pred hhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCC-HHHHHHHHHcCCHHHHHHHHcCCChHHHHH
Confidence 8888887568999999999987654 489999999999997 34 578899999999999999999999999999
Q ss_pred HHHHHHHhhcCCh---hhhhhhhhHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHH
Q 017249 299 ARTLLDLLRDTPQ---EKRLSSSVLEKIVYDIAARVDGADKAAETAKRLLQDMVQRS 352 (375)
Q Consensus 299 A~~~L~~l~~~~~---~~~~~~g~~~~l~~~l~~~~~g~~~~~~~a~~~l~~l~~~s 352 (375)
|+++|.+|+...+ ..+.+.|++++|+..|. +++++.++.|..+|.+|....
T Consensus 283 A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~---s~~~~i~~~A~~aL~nL~~~~ 336 (354)
T 3nmw_A 283 ACGTLWNLSARNPKDQEALWDMGAVSMLKNLIH---SKHKMIAMGSAAALRNLMANR 336 (354)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTT---CSSHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHh---CCCHHHHHHHHHHHHHHHcCC
Confidence 9999999995442 26788999999998774 567999999999999998653
No 20
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.98 E-value=1.3e-29 Score=243.06 Aligned_cols=318 Identities=19% Similarity=0.195 Sum_probs=273.5
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhc-CChHHHHHhhCCC-CHHHHHHHHHHHHHhhccChhhH
Q 017249 26 LIEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAA-GVVQPLVLMLVSP-NLDAIESSLLALLNLAVRNERNK 103 (375)
Q Consensus 26 ~l~~Lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~-g~v~~Lv~~L~~~-~~~~~~~a~~~L~~L~~~~~~~r 103 (375)
.++.|++.|++++++++..|+..|.++...........+++. |+++.|+++|.++ ++.++..|+++|.+++.++++..
T Consensus 21 ~l~~l~~~l~s~~~~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~ 100 (450)
T 2jdq_A 21 ITSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQT 100 (450)
T ss_dssp -CHHHHHHHHSSCHHHHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHH
T ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHH
Confidence 488999999999999999999999998752102333456677 9999999999998 89999999999999999888888
Q ss_pred HHHHHcCChHHHHHhhcCCChHHHHHHHHHHHHhhccCC-ChhHHHhcCChHHHHHHhcc-CCHHHHHHHHHHHHHhccC
Q 017249 104 VKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAP-NKPAIAASGAAPLLVQILHS-GSVQGRVDAVTALHYLSTC 181 (375)
Q Consensus 104 ~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~-~~~~i~~~~~l~~L~~lL~~-~~~~~~~~a~~~L~~L~~~ 181 (375)
..+++.|++|.|+++|.++++.+++.|+++|.+++.+.+ .+..+...|+++.|+.++.+ .+..++..++++|.+|+..
T Consensus 101 ~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~ 180 (450)
T 2jdq_A 101 RIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRG 180 (450)
T ss_dssp HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCC
T ss_pred HHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCC
Confidence 888999999999999999999999999999999998754 56777788999999999996 6899999999999999976
Q ss_pred C--CCchhhhhcCCcHHHHHHhhhcccchHHHHHHHHHHHHhhCC-hhhhHHHhhccCcHHHHHHHhccCChHHHHHHHH
Q 017249 182 K--ENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSS-EEGRIAITNSDGGILTLVETVEDGSLVSTQHAVG 258 (375)
Q Consensus 182 ~--~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~ 258 (375)
. .....++ .++++.|+.++.++ +..++..++++|.+++.. ++....+. ..|+++.|+.+|.++++.++..|++
T Consensus 181 ~~~~~~~~~~-~~~l~~L~~~l~~~--~~~v~~~a~~~L~~l~~~~~~~~~~~~-~~~~i~~L~~ll~~~~~~v~~~a~~ 256 (450)
T 2jdq_A 181 KSPPPEFAKV-SPCLNVLSWLLFVS--DTDVLADACWALSYLSDGPNDKIQAVI-DAGVCRRLVELLMHNDYKVVSPALR 256 (450)
T ss_dssp SSSCCCGGGT-GGGHHHHHHHTTCC--CHHHHHHHHHHHHHHTSSSHHHHHHHH-HTTTHHHHHHHTTCSCHHHHHHHHH
T ss_pred CCCCCCHHHH-HHHHHHHHHHHccC--CHHHHHHHHHHHHHHHCCCcHHHHHHH-HcCcHHHHHHHHCCCchhHHHHHHH
Confidence 4 3333333 78999999999875 457889999999999985 45555565 6899999999999999999999999
Q ss_pred HHHHhcccCcHHHHHHHHHcCChHHHHHHhhhCCHHHHHHHHHHHHHhhcCChh---hhhhhhhHHHHHHHHhhcCCChH
Q 017249 259 ALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDTPQE---KRLSSSVLEKIVYDIAARVDGAD 335 (375)
Q Consensus 259 ~L~~l~~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~~---~~~~~g~~~~l~~~l~~~~~g~~ 335 (375)
+|.+++.+. +...+.+.+.|+++.|+.++.++++.+++.|+++|.+++...+. .++..|+++.|+..|. ++.+
T Consensus 257 ~L~~l~~~~-~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~---~~~~ 332 (450)
T 2jdq_A 257 AVGNIVTGD-DIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQ---TAEF 332 (450)
T ss_dssp HHHHHTTSC-HHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHH---HSCH
T ss_pred HHHHHhhCC-hHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHh---cCCH
Confidence 999999987 45677788899999999999999999999999999999976533 4667899999998886 4568
Q ss_pred HHHHHHHHHHHHHHHH
Q 017249 336 KAAETAKRLLQDMVQR 351 (375)
Q Consensus 336 ~~~~~a~~~l~~l~~~ 351 (375)
+.+..|..+|.++...
T Consensus 333 ~v~~~a~~~L~~l~~~ 348 (450)
T 2jdq_A 333 RTRKEAAWAITNATSG 348 (450)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcC
Confidence 9999999999999865
No 21
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=99.97 E-value=1e-29 Score=249.02 Aligned_cols=320 Identities=19% Similarity=0.169 Sum_probs=273.1
Q ss_pred hhhHHHHHhhHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHH
Q 017249 14 QEEEAWNQRKQALIEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIESSLLALL 93 (375)
Q Consensus 14 ~~~~~~~~~~~~~l~~Lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~~~~~~~~~a~~~L~ 93 (375)
+.+++..+.+.++++.|+.+|++++++++..|+++|.+++.++ +..+..+.+.|+++.|+++|.+++.+++..++.+|.
T Consensus 90 ~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~-~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~ 168 (529)
T 1jdh_A 90 HREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQ-EGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQ 168 (529)
T ss_dssp SHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHC-TTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHH
T ss_pred CchhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCC-cchHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 3457788888999999999999999999999999999999997 678888999999999999999999999999999999
Q ss_pred HhhccChhhHHHHHHcCChHHHHHhhcCCC-hHHHHHHHHHHHHhhccCCChhHHHhcCChHHHHHHhccCCHHHHHHHH
Q 017249 94 NLAVRNERNKVKIATAGAIPPLVELLKFQN-GTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHSGSVQGRVDAV 172 (375)
Q Consensus 94 ~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~-~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~ 172 (375)
+++.++++++..+.+.|+++.|+.++++.+ ...+..++.+|++++.+++++..+...|+++.|++++.+++..++..++
T Consensus 169 ~la~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~ 248 (529)
T 1jdh_A 169 ILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCL 248 (529)
T ss_dssp HHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhCCChHHHHHHH
Confidence 999988999999999999999999998774 5567778999999999888889999999999999999999999999999
Q ss_pred HHHHHhccCCCCchhhhhcCCcHHHHHHhhhcccchHHHHHHHHHHHHhhCC-hhhhHHHhhccCcHHHHHHHhcc--CC
Q 017249 173 TALHYLSTCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSS-EEGRIAITNSDGGILTLVETVED--GS 249 (375)
Q Consensus 173 ~~L~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~~g~v~~Lv~lL~~--~~ 249 (375)
++|.+|+....... ...++++.|++++.+. ++.++..++++|++|+.. ++++..+. +.|+++.|+.+|.+ .+
T Consensus 249 ~~L~~l~~~~~~~~--~~~~~i~~L~~ll~~~--~~~v~~~a~~~L~~L~~~~~~~~~~~~-~~~~v~~L~~ll~~~~~~ 323 (529)
T 1jdh_A 249 WTLRNLSDAATKQE--GMEGLLGTLVQLLGSD--DINVVTCAAGILSNLTCNNYKNKMMVC-QVGGIEALVRTVLRAGDR 323 (529)
T ss_dssp HHHHHHHTTCTTCS--CCHHHHHHHHHHTTCS--CHHHHHHHHHHHHHHTTTCHHHHHHHH-HTTHHHHHHHHHHHHTTC
T ss_pred HHHHHHhcCChhhH--HHHhHHHHHHHHHcCC--CHHHHHHHHHHHHHHhcCCHHHHHHHH-HcCChHHHHHHHHccCCH
Confidence 99999997653322 2247899999999765 557889999999999986 56777777 68999999999975 33
Q ss_pred hHHHHHHHHHHHHhcccCc--HHHHHHHHHcCChHHHHHHhhhCC-HHHHHHHHHHHHHhhcCChh--hhhhhhhHHHHH
Q 017249 250 LVSTQHAVGALLSLCQSCR--DKYRQLILKEGAIPGLLRLTVEGT-FEAQERARTLLDLLRDTPQE--KRLSSSVLEKIV 324 (375)
Q Consensus 250 ~~~~~~a~~~L~~l~~~~~--~~~~~~l~~~g~v~~L~~ll~~~~-~~~~~~A~~~L~~l~~~~~~--~~~~~g~~~~l~ 324 (375)
+.++..|+++|+|++.++. +..+..+.+.|+++.|+.++.+++ +.+++.|+++|++++.++.. .+.+.|+++.|+
T Consensus 324 ~~v~~~a~~~L~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~i~~L~ 403 (529)
T 1jdh_A 324 EDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLV 403 (529)
T ss_dssp HHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGGHHHHHHTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCchHHHHHHHHHHcCChhHHHHHhccccchHHHHHHHHHHHHHhcChhhhHHHHHcCCHHHHH
Confidence 7899999999999988643 235778889999999999999776 69999999999999987633 567889999999
Q ss_pred HHHhhcCCChHHHHHHHH
Q 017249 325 YDIAARVDGADKAAETAK 342 (375)
Q Consensus 325 ~~l~~~~~g~~~~~~~a~ 342 (375)
..|. ++....+..|.
T Consensus 404 ~ll~---~~~~~v~~~a~ 418 (529)
T 1jdh_A 404 QLLV---RAHQDTQRRTS 418 (529)
T ss_dssp HHHH---HHHHHHC----
T ss_pred HHHH---HHhHHHHHHHh
Confidence 8886 23344444443
No 22
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=99.97 E-value=2.5e-29 Score=246.19 Aligned_cols=323 Identities=20% Similarity=0.217 Sum_probs=278.8
Q ss_pred HHHHHh-hHhHHHHHHHHhcC-CCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHH
Q 017249 17 EAWNQR-KQALIEELSDKLIN-GDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIESSLLALLN 94 (375)
Q Consensus 17 ~~~~~~-~~~~l~~Lv~~L~s-~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~~~~~~~~~a~~~L~~ 94 (375)
++..+. ..+.++.|++.|.+ ++++.+..|+.+|.+++... +++..+.+.|+++.|+++|++++++++..++++|.+
T Consensus 50 ~~~~~~~~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~~--~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~ 127 (529)
T 1jdh_A 50 SRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHR--EGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHN 127 (529)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSH--HHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred cHHHHHhCcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCc--hhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 333333 45899999999975 58999999999999998876 699999999999999999999999999999999999
Q ss_pred hhccChhhHHHHHHcCChHHHHHhhcCCChHHHHHHHHHHHHhhcc-CCChhHHHhcCChHHHHHHhccCCH-HHHHHHH
Q 017249 95 LAVRNERNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAA-APNKPAIAASGAAPLLVQILHSGSV-QGRVDAV 172 (375)
Q Consensus 95 L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~-~~~~~~i~~~~~l~~L~~lL~~~~~-~~~~~a~ 172 (375)
++.+++..+..+.+.|++|.|+.++.++++.++..++.+|.+++.. ++++..+...|+++.|+++|++++. ..+..++
T Consensus 128 l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~ 207 (529)
T 1jdh_A 128 LLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTS 207 (529)
T ss_dssp HHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHH
T ss_pred HhcCCcchHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHH
Confidence 9998778899999999999999999999999999999999999985 4577788888999999999988764 5577789
Q ss_pred HHHHHhccCCCCchhhhhcCCcHHHHHHhhhcccchHHHHHHHHHHHHhhCChhhhHHHhhccCcHHHHHHHhccCChHH
Q 017249 173 TALHYLSTCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVS 252 (375)
Q Consensus 173 ~~L~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~ 252 (375)
.+|++|+..++++..+++.|+++.|+.++.++ +..++..++++|.+|+....... . ..|+++.|+.+|.++++.+
T Consensus 208 ~~L~~l~~~~~~~~~~~~~g~~~~L~~ll~~~--~~~~~~~a~~~L~~l~~~~~~~~--~-~~~~i~~L~~ll~~~~~~v 282 (529)
T 1jdh_A 208 RVLKVLSVCSSNKPAIVEAGGMQALGLHLTDP--SQRLVQNCLWTLRNLSDAATKQE--G-MEGLLGTLVQLLGSDDINV 282 (529)
T ss_dssp HHHHHHTTSTTHHHHHHHTTHHHHHHTTTTSS--CHHHHHHHHHHHHHHHTTCTTCS--C-CHHHHHHHHHHTTCSCHHH
T ss_pred HHHHHHhcCcccHHHHHHCCCHHHHHHHHhCC--ChHHHHHHHHHHHHHhcCChhhH--H-HHhHHHHHHHHHcCCCHHH
Confidence 99999999888999999999999999999876 45788899999999998654332 1 3478999999999999999
Q ss_pred HHHHHHHHHHhcccCcHHHHHHHHHcCChHHHHHHhhh--CCHHHHHHHHHHHHHhhcCCh------hhhhhhhhHHHHH
Q 017249 253 TQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVE--GTFEAQERARTLLDLLRDTPQ------EKRLSSSVLEKIV 324 (375)
Q Consensus 253 ~~~a~~~L~~l~~~~~~~~~~~l~~~g~v~~L~~ll~~--~~~~~~~~A~~~L~~l~~~~~------~~~~~~g~~~~l~ 324 (375)
+..|+++|++++.++ ++.+..+.+.|+++.|++++.+ .++.+++.|+++|++++...+ ..+...|+++.|+
T Consensus 283 ~~~a~~~L~~L~~~~-~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~i~~~~~i~~L~ 361 (529)
T 1jdh_A 283 VTCAAGILSNLTCNN-YKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVV 361 (529)
T ss_dssp HHHHHHHHHHHTTTC-HHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhcCC-HHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHcCChhHHH
Confidence 999999999999876 5778899999999999999975 348999999999999987642 2567789999999
Q ss_pred HHHhhcCCChHHHHHHHHHHHHHHH
Q 017249 325 YDIAARVDGADKAAETAKRLLQDMV 349 (375)
Q Consensus 325 ~~l~~~~~g~~~~~~~a~~~l~~l~ 349 (375)
..|.. ...+..+..|.++|.++.
T Consensus 362 ~lL~~--~~~~~v~~~a~~~l~nl~ 384 (529)
T 1jdh_A 362 KLLHP--PSHWPLIKATVGLIRNLA 384 (529)
T ss_dssp HTTST--TCCHHHHHHHHHHHHHHT
T ss_pred HHhcc--ccchHHHHHHHHHHHHHh
Confidence 88862 223678888888888875
No 23
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=99.97 E-value=2e-28 Score=245.71 Aligned_cols=330 Identities=19% Similarity=0.166 Sum_probs=281.4
Q ss_pred hhHHHHHhhHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHH
Q 017249 15 EEEAWNQRKQALIEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIESSLLALLN 94 (375)
Q Consensus 15 ~~~~~~~~~~~~l~~Lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~~~~~~~~~a~~~L~~ 94 (375)
.+++..+.+.+.++.|+.+|+++++.++..|+++|.+++... +..+..+++.|+++.|+++|++++++++..++.+|.+
T Consensus 88 ~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~-~~~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~ 166 (644)
T 2z6h_A 88 REGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQ-EGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQI 166 (644)
T ss_dssp HHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHS-TTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHH
T ss_pred hhhHHHHHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCc-chhHHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHH
Confidence 447778888899999999999999999999999999999997 6788888999999999999999999999999999999
Q ss_pred hhccChhhHHHHHHcCChHHHHHhhcCCC-hHHHHHHHHHHHHhhccCCChhHHHhcCChHHHHHHhccCCHHHHHHHHH
Q 017249 95 LAVRNERNKVKIATAGAIPPLVELLKFQN-GTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHSGSVQGRVDAVT 173 (375)
Q Consensus 95 L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~-~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~ 173 (375)
++.++++++..+.+.|+++.|+.+|++.+ ..++..++.+|++|+.+++++..+...|+++.|++++.+++..++..+++
T Consensus 167 La~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~ 246 (644)
T 2z6h_A 167 LAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLW 246 (644)
T ss_dssp HHTTCHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCTTHHHHHHHTTHHHHHHTTTTCSCHHHHHHHHH
T ss_pred HHhcCcHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhcCCHHHHHHHHH
Confidence 99878999999999999999999998774 67788999999999998888999999999999999999999999999999
Q ss_pred HHHHhccCCCCchhhhhcCCcHHHHHHhhhcccchHHHHHHHHHHHHhhCC-hhhhHHHhhccCcHHHHHHHhccC--Ch
Q 017249 174 ALHYLSTCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSS-EEGRIAITNSDGGILTLVETVEDG--SL 250 (375)
Q Consensus 174 ~L~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~~g~v~~Lv~lL~~~--~~ 250 (375)
+|.+|+...... ....++++.|++++.+. +..+++.++++|.+|+.. +.++..+. +.|+++.|+.+|.+. .+
T Consensus 247 ~L~nL~~~~~~~--~~~~~~i~~Lv~lL~~~--d~~v~~~a~~aL~~L~~~~~~~~~~v~-~~g~v~~Lv~lL~~~~~~~ 321 (644)
T 2z6h_A 247 TLRNLSDAATKQ--EGMEGLLGTLVQLLGSD--DINVVTCAAGILSNLTCNNYKNKMMVC-QVGGIEALVRTVLRAGDRE 321 (644)
T ss_dssp HHHHHGGGCTTC--CSCHHHHHHHHHHTTCS--CHHHHHHHHHHHHHHHTTCHHHHHHHH-HTTHHHHHHHHHHHHTTCH
T ss_pred HHHHHhhcchhh--hhhhhHHHHHHHHHcCC--CHHHHHHHHHHHHHHHcCCHHHHHHHH-HcCCHHHHHHHHHccCCcH
Confidence 999999764332 12247899999999865 457889999999999986 56677777 689999999999863 27
Q ss_pred HHHHHHHHHHHHhcccCcH--HHHHHHHHcCChHHHHHHhhhCC-HHHHHHHHHHHHHhhcCChh--hhhhhhhHHHHHH
Q 017249 251 VSTQHAVGALLSLCQSCRD--KYRQLILKEGAIPGLLRLTVEGT-FEAQERARTLLDLLRDTPQE--KRLSSSVLEKIVY 325 (375)
Q Consensus 251 ~~~~~a~~~L~~l~~~~~~--~~~~~l~~~g~v~~L~~ll~~~~-~~~~~~A~~~L~~l~~~~~~--~~~~~g~~~~l~~ 325 (375)
.++..|+++|.+|+..... ..+..+.+.|+++.|++++.+.+ +.+++.|+++|++|+.+... .++..|+++.|+.
T Consensus 322 ~v~~~a~~aL~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~~~~~~~~i~~~~~i~~Lv~ 401 (644)
T 2z6h_A 322 DITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQ 401 (644)
T ss_dssp HHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGGHHHHHHTTHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCchHHHHHHHHHHccChHHHHHHhCccCchHHHHHHHHHHHHHccCHHHHHHHHHcCCHHHHHH
Confidence 8999999999999975421 34556788999999999998764 79999999999999987643 5778999999998
Q ss_pred HHhhcC-----------------C--ChHHHHHHHHHHHHHHHH
Q 017249 326 DIAARV-----------------D--GADKAAETAKRLLQDMVQ 350 (375)
Q Consensus 326 ~l~~~~-----------------~--g~~~~~~~a~~~l~~l~~ 350 (375)
.|.... + .....++.+..+|.+|..
T Consensus 402 lL~~~~~~vr~~a~~al~n~~~~~~~~~~~v~~~a~~aL~~La~ 445 (644)
T 2z6h_A 402 LLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILAR 445 (644)
T ss_dssp HHHHHHHHHTTC----------CCSSCHHHHHHHHHHHHHHHTT
T ss_pred HHhccchhhhhHhhhccccchhcccccHHHHHHHHHHHHHHHhc
Confidence 886421 1 134566777888887753
No 24
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=99.97 E-value=4.4e-29 Score=250.50 Aligned_cols=319 Identities=20% Similarity=0.223 Sum_probs=279.7
Q ss_pred hhHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhc-CChHHHHHhhCCC-CHHHHHHHHHHHHHhhccC
Q 017249 22 RKQALIEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAA-GVVQPLVLMLVSP-NLDAIESSLLALLNLAVRN 99 (375)
Q Consensus 22 ~~~~~l~~Lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~-g~v~~Lv~~L~~~-~~~~~~~a~~~L~~L~~~~ 99 (375)
...+.++.|+.+|+++++.++..|+.+|.+++.+. .++..+... |+++.|++.|.++ +++++..|+.+|.+|+. +
T Consensus 11 ~~~g~i~~Lv~lL~~~~~~vr~~A~~~L~~La~~~--~~~~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~-~ 87 (644)
T 2z6h_A 11 LATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKE--ASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSH-H 87 (644)
T ss_dssp -CTTTHHHHHHHHTCSCHHHHHHHHHHHHHHHTST--THHHHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTT-S
T ss_pred hhhchHHHHHHHHcCCCHHHHHHHHHHHHHHHCCC--hhHHHHHhccChHHHHHHHHhcCCCHHHHHHHHHHHHHHhc-C
Confidence 56788999999999999999999999999999988 577767655 8999999999865 89999999999999998 4
Q ss_pred hhhHHHHHHcCChHHHHHhhcCCChHHHHHHHHHHHHhhccCC-ChhHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHh
Q 017249 100 ERNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAP-NKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYL 178 (375)
Q Consensus 100 ~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~-~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~~L 178 (375)
++++..+.+.|+++.|+.+|+++++.++..|+++|.+++...+ .+..+...|+++.|+++|++++..++..++.+|.+|
T Consensus 88 ~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L 167 (644)
T 2z6h_A 88 REGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQIL 167 (644)
T ss_dssp HHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHH
Confidence 6799999999999999999999999999999999999998854 566677899999999999999999999999999999
Q ss_pred cc-CCCCchhhhhcCCcHHHHHHhhhcccchHHHHHHHHHHHHhhCChhhhHHHhhccCcHHHHHHHhccCChHHHHHHH
Q 017249 179 ST-CKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAV 257 (375)
Q Consensus 179 ~~-~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~a~ 257 (375)
+. .++++..+.+.|+++.|++++.+.+ ...+++.++.+|++|+.++.++..++ +.|+++.|+.++.+++..++..++
T Consensus 168 a~~~~~~~~~i~~~g~v~~Lv~lL~~~~-~~~~~~~a~~~L~nLs~~~~~~~~l~-~~g~l~~L~~ll~~~~~~~~~~a~ 245 (644)
T 2z6h_A 168 AYGNQESKLIILASGGPQALVNIMRTYT-YEKLLWTTSRVLKVLSVCSSNKPAIV-EAGGMQALGLHLTDPSQRLVQNCL 245 (644)
T ss_dssp HTTCHHHHHHHHHTTHHHHHHHHHTTCC-CHHHHHHHHHHHHHHTTCTTHHHHHH-HTTHHHHHHTTTTCSCHHHHHHHH
T ss_pred HhcCcHHHHHHHHcCChHHHHHHHHcCC-hHHHHHHHHHHHHHHhcCcccHHHHH-HCCCHHHHHHHHhcCCHHHHHHHH
Confidence 96 5678888999999999999999875 45677889999999999999999998 689999999999999999999999
Q ss_pred HHHHHhcccCcHHHHHHHHHcCChHHHHHHhhhCCHHHHHHHHHHHHHhhcCCh---hhhhhhhhHHHHHHHHhhcCCCh
Q 017249 258 GALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDTPQ---EKRLSSSVLEKIVYDIAARVDGA 334 (375)
Q Consensus 258 ~~L~~l~~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~---~~~~~~g~~~~l~~~l~~~~~g~ 334 (375)
++|.+++..... .....++++.|+.++.+.++.+++.|+++|.+|+...+ ..+.+.|+++.|+..|....+ .
T Consensus 246 ~~L~nL~~~~~~----~~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~-~ 320 (644)
T 2z6h_A 246 WTLRNLSDAATK----QEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGD-R 320 (644)
T ss_dssp HHHHHHGGGCTT----CCSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTT-C
T ss_pred HHHHHHhhcchh----hhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHHccCC-c
Confidence 999999987532 11124789999999999999999999999999998763 367788999999998874322 2
Q ss_pred HHHHHHHHHHHHHHHH
Q 017249 335 DKAAETAKRLLQDMVQ 350 (375)
Q Consensus 335 ~~~~~~a~~~l~~l~~ 350 (375)
+..+..|..+|.+|..
T Consensus 321 ~~v~~~a~~aL~nL~~ 336 (644)
T 2z6h_A 321 EDITEPAICALRHLTS 336 (644)
T ss_dssp HHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHhc
Confidence 7889999999999964
No 25
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.97 E-value=6.9e-29 Score=219.42 Aligned_cols=240 Identities=23% Similarity=0.284 Sum_probs=220.0
Q ss_pred CChHHHHHhhCCCCHHHHHHHHHHHHHhhccChhhHHHHHHcCChHHHHHhhcCCChHHHHHHHHHHHHhhcc-CCChhH
Q 017249 68 GVVQPLVLMLVSPNLDAIESSLLALLNLAVRNERNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAA-APNKPA 146 (375)
Q Consensus 68 g~v~~Lv~~L~~~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~-~~~~~~ 146 (375)
|+++.|+++|.+++++++..|+++|.+++.++++++..+.+.|+++.|+.+|+++++.++..++++|.+++.+ ++++..
T Consensus 2 ~~i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 81 (252)
T 4hxt_A 2 NDVEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKA 81 (252)
T ss_dssp CHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred CcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHH
Confidence 5789999999999999999999999999998888999999999999999999999999999999999999988 557888
Q ss_pred HHhcCChHHHHHHhccCCHHHHHHHHHHHHHhc-cCCCCchhhhhcCCcHHHHHHhhhcccchHHHHHHHHHHHHhhCCh
Q 017249 147 IAASGAAPLLVQILHSGSVQGRVDAVTALHYLS-TCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSE 225 (375)
Q Consensus 147 i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~~L~-~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~~~ 225 (375)
+...|+++.|+.+|+++++.++..++++|.+|+ ..++++..+.+.|+++.|++++.++ +..++..++++|++|+...
T Consensus 82 ~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~--~~~~~~~a~~~L~~l~~~~ 159 (252)
T 4hxt_A 82 IVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTST--DSEVQKEAARALANIASGP 159 (252)
T ss_dssp HHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCS--CHHHHHHHHHHHHHHTTSC
T ss_pred HHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCC--CHHHHHHHHHHHHHHHcCC
Confidence 889999999999999999999999999999999 4567888889999999999999976 4578899999999999854
Q ss_pred h-hhHHHhhccCcHHHHHHHhccCChHHHHHHHHHHHHhcccCcHHHHHHHHHcCChHHHHHHhhhCCHHHHHHHHHHHH
Q 017249 226 E-GRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLD 304 (375)
Q Consensus 226 ~-~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~~~~~A~~~L~ 304 (375)
+ .+..+. +.|+++.|+.++.++++.++..|+++|.+++..+ +..+..+.+.|+++.|++++.++++.+++.|+++|.
T Consensus 160 ~~~~~~~~-~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~-~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~ 237 (252)
T 4hxt_A 160 DEAIKAIV-DAGGVEVLVKLLTSTDSEVQKEAARALANIASGP-TSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALE 237 (252)
T ss_dssp HHHHHHHH-HTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSB-HHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHH
T ss_pred HHHHHHHH-HCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCC-HHHHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHH
Confidence 4 445666 6899999999999999999999999999999865 577888999999999999999999999999999999
Q ss_pred HhhcCCh
Q 017249 305 LLRDTPQ 311 (375)
Q Consensus 305 ~l~~~~~ 311 (375)
+++...+
T Consensus 238 ~l~~~~~ 244 (252)
T 4hxt_A 238 NIKSGGW 244 (252)
T ss_dssp HHHHTCB
T ss_pred HHHcCCC
Confidence 9998764
No 26
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=99.96 E-value=1.2e-27 Score=244.24 Aligned_cols=328 Identities=20% Similarity=0.206 Sum_probs=270.9
Q ss_pred hhHHHHHhhHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHH
Q 017249 15 EEEAWNQRKQALIEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIESSLLALLN 94 (375)
Q Consensus 15 ~~~~~~~~~~~~l~~Lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~~~~~~~~~a~~~L~~ 94 (375)
.+++..+...++++.|+.+|+++++.++..|+++|.+++... +..+..+.+.|+++.|+++|.+++.+++..++.+|.+
T Consensus 224 ~~~~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~-~~~~~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~ 302 (780)
T 2z6g_A 224 REGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQ-EGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQI 302 (780)
T ss_dssp HHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHS-TTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHH
T ss_pred chhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCC-hhhHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 345667788899999999999999999999999999999997 6788888899999999999999999999999999999
Q ss_pred hhccChhhHHHHHHcCChHHHHHhhcCCC-hHHHHHHHHHHHHhhccCCChhHHHhcCChHH------------------
Q 017249 95 LAVRNERNKVKIATAGAIPPLVELLKFQN-GTLRELAAAAILTLSAAAPNKPAIAASGAAPL------------------ 155 (375)
Q Consensus 95 L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~-~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~l~~------------------ 155 (375)
++.++++++..+...|+++.|+.+|++.+ ...+..++.+|++|+....++..+...|+++.
T Consensus 303 La~~~~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~ 382 (780)
T 2z6g_A 303 LAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLW 382 (780)
T ss_dssp HHTTCHHHHHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSTTHHHHHHHTTHHHHHGGGTTCSCHHHHHHHHH
T ss_pred HhcCChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHHHHHHHHhchHHHHHHHHcCCchHHHHHHHH
Confidence 99888999999999999999999998775 44566788888888877666666655555544
Q ss_pred ---------------------HHHHhccCCHHHHHHHHHHHHHhccCC-CCchhhhhcCCcHHHHHHhhhcccchHHHHH
Q 017249 156 ---------------------LVQILHSGSVQGRVDAVTALHYLSTCK-ENSSPILDATAVPPLINLLKDCKKYSKFAEK 213 (375)
Q Consensus 156 ---------------------L~~lL~~~~~~~~~~a~~~L~~L~~~~-~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~ 213 (375)
|+.+|++.+..++..|+++|.+|+..+ +++..+.+.|+++.|+.++.+......++..
T Consensus 383 ~L~~L~~~~~~~~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~ 462 (780)
T 2z6g_A 383 TLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEP 462 (780)
T ss_dssp HHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHhccchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHH
Confidence 445555666777888888888888764 5677778889999999999875434478899
Q ss_pred HHHHHHHhhCCh-h---hhHHHhhccCcHHHHHHHhccCCh-HHHHHHHHHHHHhcccCcHHHHHHHHHcCChHHHHHHh
Q 017249 214 ATALLEILSSSE-E---GRIAITNSDGGILTLVETVEDGSL-VSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLT 288 (375)
Q Consensus 214 a~~~L~~l~~~~-~---~~~~~~~~~g~v~~Lv~lL~~~~~-~~~~~a~~~L~~l~~~~~~~~~~~l~~~g~v~~L~~ll 288 (375)
|+++|+||+... + .+..+. ..|+++.|+.+|.+++. .++..|+++|+|++.+. ..+..+.+.|+++.|+.++
T Consensus 463 Al~aL~nL~~~~~~~~~~~~~v~-~~~~l~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~--~~~~~i~~~g~i~~Lv~lL 539 (780)
T 2z6g_A 463 AICALRHLTSRHQDAEMAQNAVR-LHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCP--ANHAPLREQGAIPRLVQLL 539 (780)
T ss_dssp HHHHHHHTTSSSTTHHHHHHHHH-HTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHHSSH--HHHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHhcCchHHHHHHHHH-HcCCHHHHHHHhcCCChHHHHHHHHHHHHHHhcCH--HHHHHHHHCCCHHHHHHHH
Confidence 999999998743 2 244555 68999999999998775 89999999999999864 5567888999999999998
Q ss_pred hhCC----------------------HHHHHHHHHHHHHhhcCChh--hhhhhhhHHHHHHHHhhcCCChHHHHHHHHHH
Q 017249 289 VEGT----------------------FEAQERARTLLDLLRDTPQE--KRLSSSVLEKIVYDIAARVDGADKAAETAKRL 344 (375)
Q Consensus 289 ~~~~----------------------~~~~~~A~~~L~~l~~~~~~--~~~~~g~~~~l~~~l~~~~~g~~~~~~~a~~~ 344 (375)
.+++ +.+++.++.+|.+|+.+... .+.+.|++++|+..|. ++.+..+..|..+
T Consensus 540 ~~~~~~~~~~aa~al~nq~~~~~~~~~~v~~~a~~aL~~La~~~~~~~~l~~~~~i~~Lv~lL~---~~~~~v~~~a~~a 616 (780)
T 2z6g_A 540 VRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILARDIHNRIVIRGLNTIPLFVQLLY---SPIENIQRVAAGV 616 (780)
T ss_dssp HHHHHHHHHTTC------CCSTTCCHHHHHHHHHHHHHHHTTSHHHHHHHHHTCCHHHHHHGGG---CSCHHHHHHHHHH
T ss_pred HhcchhHHHHHhhccccchhhcccChHHHHHHHHHHHHHHhcChhhHHHHHHCCcHHHHHHHHc---CCCHHHHHHHHHH
Confidence 7644 44667788899999876533 4668999999998885 4568999999999
Q ss_pred HHHHH
Q 017249 345 LQDMV 349 (375)
Q Consensus 345 l~~l~ 349 (375)
|.+|.
T Consensus 617 L~~L~ 621 (780)
T 2z6g_A 617 LCELA 621 (780)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 99885
No 27
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.96 E-value=3.2e-28 Score=215.11 Aligned_cols=240 Identities=26% Similarity=0.304 Sum_probs=219.8
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhccChhhHH
Q 017249 25 ALIEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIESSLLALLNLAVRNERNKV 104 (375)
Q Consensus 25 ~~l~~Lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~~~~~~~~~a~~~L~~L~~~~~~~r~ 104 (375)
+.++.|+.+|++++++++..|+++|.+++... ++++..+++.|+++.|+++|++++.+++..++++|.+++.++++++.
T Consensus 2 ~~i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~ 80 (252)
T 4hxt_A 2 NDVEKLVKLLTSTDSETQKEAARDLAEIASGP-ASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIK 80 (252)
T ss_dssp CHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSC-HHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred CcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCC-cHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHH
Confidence 56899999999999999999999999999998 77999999999999999999999999999999999999998799999
Q ss_pred HHHHcCChHHHHHhhcCCChHHHHHHHHHHHHhhcc-CCChhHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCC-
Q 017249 105 KIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAA-APNKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTCK- 182 (375)
Q Consensus 105 ~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~-~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~~L~~~~- 182 (375)
.+.+.|+++.|+.+|+++++.++..++++|.+++.. ++.+..+...|+++.|+++++++++.++..++++|.+|+..+
T Consensus 81 ~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~ 160 (252)
T 4hxt_A 81 AIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPD 160 (252)
T ss_dssp HHHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCH
T ss_pred HHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCH
Confidence 999999999999999999999999999999999954 557788888999999999999999999999999999999764
Q ss_pred CCchhhhhcCCcHHHHHHhhhcccchHHHHHHHHHHHHhhC-ChhhhHHHhhccCcHHHHHHHhccCChHHHHHHHHHHH
Q 017249 183 ENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSS-SEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALL 261 (375)
Q Consensus 183 ~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~-~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~ 261 (375)
+.+..+.+.|+++.|+.++.++ +..++..++++|.+++. ++..+..+. +.|+++.|+.++.++++.+++.|+++|.
T Consensus 161 ~~~~~~~~~~~i~~L~~ll~~~--~~~v~~~a~~~L~~l~~~~~~~~~~l~-~~~~i~~L~~ll~~~~~~v~~~a~~~L~ 237 (252)
T 4hxt_A 161 EAIKAIVDAGGVEVLVKLLTST--DSEVQKEAARALANIASGPTSAIKAIV-DAGGVEVLQKLLTSTDSEVQKEAQRALE 237 (252)
T ss_dssp HHHHHHHHTTHHHHHHHHTTCS--CHHHHHHHHHHHHHHTTSBHHHHHHHH-HTTHHHHHHHGGGCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHHCCC--CHHHHHHHHHHHHHHHcCCHHHHHHHH-HCCCHHHHHHHHCCCcHHHHHHHHHHHH
Confidence 4557788899999999999975 45789999999999998 455566666 6899999999999999999999999999
Q ss_pred HhcccCc
Q 017249 262 SLCQSCR 268 (375)
Q Consensus 262 ~l~~~~~ 268 (375)
|++....
T Consensus 238 ~l~~~~~ 244 (252)
T 4hxt_A 238 NIKSGGW 244 (252)
T ss_dssp HHHHTCB
T ss_pred HHHcCCC
Confidence 9988653
No 28
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.96 E-value=1.2e-28 Score=218.37 Aligned_cols=238 Identities=25% Similarity=0.345 Sum_probs=217.0
Q ss_pred HhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhccChhhH
Q 017249 24 QALIEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIESSLLALLNLAVRNERNK 103 (375)
Q Consensus 24 ~~~l~~Lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~~~~~~~~~a~~~L~~L~~~~~~~r 103 (375)
...++.++..|++++++++..|++.|.++.... +.++..+++.|+++.|+++|++++++++..|+++|.+++.++++++
T Consensus 11 ~~~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~-~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~ 89 (252)
T 4db8_A 11 GSELPQMTQQLNSDDMQEQLSATRKFSQILSDG-NEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQI 89 (252)
T ss_dssp TCSHHHHHHHHHSSCSSHHHHHHHHHHHHHHHH-HHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred cchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC-CchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHH
Confidence 345789999999999999999999998877765 6889999999999999999999999999999999999999889999
Q ss_pred HHHHHcCChHHHHHhhcCCChHHHHHHHHHHHHhhccCCCh-hHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCC
Q 017249 104 VKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNK-PAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTCK 182 (375)
Q Consensus 104 ~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~-~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~~L~~~~ 182 (375)
..+.+.|+++.|+.+|+++++.++..|+++|.+|+.+++.+ ..+...|+++.|+++|++++..++..++++|.+|+..+
T Consensus 90 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~ 169 (252)
T 4db8_A 90 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG 169 (252)
T ss_dssp HHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999988877 77889999999999999999999999999999999764
Q ss_pred -CCchhhhhcCCcHHHHHHhhhcccchHHHHHHHHHHHHhhC-ChhhhHHHhhccCcHHHHHHHhccCChHHHHHHHHHH
Q 017249 183 -ENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSS-SEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGAL 260 (375)
Q Consensus 183 -~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~-~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L 260 (375)
+....+.+.|+++.|+.++.++ +..++..++++|.+|+. ++..+..+. +.|+++.|+.++.++++.+++.|+++|
T Consensus 170 ~~~~~~~~~~~~i~~L~~ll~~~--~~~v~~~a~~~L~~l~~~~~~~~~~~~-~~g~i~~L~~ll~~~~~~v~~~A~~~L 246 (252)
T 4db8_A 170 NEQIQAVIDAGALPALVQLLSSP--NEQILQEALWALSNIASGGNEQKQAVK-EAGALEKLEQLQSHENEKIQKEAQEAL 246 (252)
T ss_dssp HHHHHHHHHTTCHHHHHHGGGCS--SHHHHHHHHHHHHHHTTSCHHHHHHHH-HTTHHHHHHTTTTCSSSHHHHTHHHHH
T ss_pred hHHHHHHHHCCCHHHHHHHHCCC--CHHHHHHHHHHHHHHhcCCHHHHHHHH-HCCcHHHHHHHhCCCCHHHHHHHHHHH
Confidence 5667778899999999999876 55789999999999996 556666666 689999999999999999999999999
Q ss_pred HHhcc
Q 017249 261 LSLCQ 265 (375)
Q Consensus 261 ~~l~~ 265 (375)
.+++.
T Consensus 247 ~~l~~ 251 (252)
T 4db8_A 247 EKLQS 251 (252)
T ss_dssp HTTC-
T ss_pred HHHhc
Confidence 99975
No 29
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.96 E-value=2.1e-28 Score=216.81 Aligned_cols=238 Identities=23% Similarity=0.279 Sum_probs=214.8
Q ss_pred CChHHHHHhhCCCCHHHHHHHHHHHHHhhccChhhHHHHHHcCChHHHHHhhcCCChHHHHHHHHHHHHhhcc-CCChhH
Q 017249 68 GVVQPLVLMLVSPNLDAIESSLLALLNLAVRNERNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAA-APNKPA 146 (375)
Q Consensus 68 g~v~~Lv~~L~~~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~-~~~~~~ 146 (375)
...+.++++|.+++++++..|+++|.++...+++++..+.+.|+++.|+.+|.++++.++..|+++|.+++.. ++++..
T Consensus 12 ~~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 91 (252)
T 4db8_A 12 SELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQA 91 (252)
T ss_dssp CSHHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred chHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 4688999999999999999999999876665778899999999999999999999999999999999999985 557888
Q ss_pred HHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCCCCc-hhhhhcCCcHHHHHHhhhcccchHHHHHHHHHHHHhhCCh
Q 017249 147 IAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTCKENS-SPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSE 225 (375)
Q Consensus 147 i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~~L~~~~~~~-~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~~~ 225 (375)
+...|+++.|+.+|+++++.++..|+++|.+|+..++.+ ..+.+.|+++.|++++.++ +..++..++++|++|+..+
T Consensus 92 i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~--~~~v~~~a~~~L~~l~~~~ 169 (252)
T 4db8_A 92 VIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSP--NEQILQEALWALSNIASGG 169 (252)
T ss_dssp HHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCS--CHHHHHHHHHHHHHHTTSC
T ss_pred HHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCC--CHHHHHHHHHHHHHHHcCC
Confidence 889999999999999999999999999999999988777 7888999999999999876 5578899999999999854
Q ss_pred -hhhHHHhhccCcHHHHHHHhccCChHHHHHHHHHHHHhcccCcHHHHHHHHHcCChHHHHHHhhhCCHHHHHHHHHHHH
Q 017249 226 -EGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLD 304 (375)
Q Consensus 226 -~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~~~~~A~~~L~ 304 (375)
..+..++ +.|+++.|+.+|.++++.++..|+++|.+++..+ ++.+..+.+.|+++.|+.++.++++.+++.|+++|.
T Consensus 170 ~~~~~~~~-~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~-~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~ 247 (252)
T 4db8_A 170 NEQIQAVI-DAGALPALVQLLSSPNEQILQEALWALSNIASGG-NEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALE 247 (252)
T ss_dssp HHHHHHHH-HTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSC-HHHHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHH
T ss_pred hHHHHHHH-HCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCC-HHHHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 5555555 6899999999999999999999999999999776 577888899999999999999999999999999999
Q ss_pred HhhcC
Q 017249 305 LLRDT 309 (375)
Q Consensus 305 ~l~~~ 309 (375)
+++.+
T Consensus 248 ~l~~~ 252 (252)
T 4db8_A 248 KLQSH 252 (252)
T ss_dssp TTC--
T ss_pred HHhcC
Confidence 99753
No 30
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=99.96 E-value=3.5e-27 Score=240.84 Aligned_cols=322 Identities=20% Similarity=0.225 Sum_probs=276.5
Q ss_pred HHHHh-hHhHHHHHHHHhcC-CCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHh
Q 017249 18 AWNQR-KQALIEELSDKLIN-GDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIESSLLALLNL 95 (375)
Q Consensus 18 ~~~~~-~~~~l~~Lv~~L~s-~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~~~~~~~~~a~~~L~~L 95 (375)
+..+. ..+.++.|+..|++ .+++++..|+.+|.+++... +++..+.+.|+++.|+++|+++++.++..|+++|.+|
T Consensus 184 ~~~i~~~~~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~--~~~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nL 261 (780)
T 2z6g_A 184 RHAIMRSPQMVSAIVRTMQNTNDVETARCTSGTLHNLSHHR--EGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNL 261 (780)
T ss_dssp HHHHTTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSH--HHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred HHHHHhccChHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCc--hhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 33444 45899999999985 49999999999999988876 7788899999999999999999999999999999999
Q ss_pred hccChhhHHHHHHcCChHHHHHhhcCCChHHHHHHHHHHHHhhcc-CCChhHHHhcCChHHHHHHhccCCH-HHHHHHHH
Q 017249 96 AVRNERNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAA-APNKPAIAASGAAPLLVQILHSGSV-QGRVDAVT 173 (375)
Q Consensus 96 ~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~-~~~~~~i~~~~~l~~L~~lL~~~~~-~~~~~a~~ 173 (375)
+.+.+..+..+.+.|+++.|+.+|.+++..++..++.+|.+++.. ++++..+...++++.|+.+|++.+. ..+..++.
T Consensus 262 a~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~ 341 (780)
T 2z6g_A 262 LLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSR 341 (780)
T ss_dssp HHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHHTTCCCHHHHHHHHH
T ss_pred hCCChhhHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHH
Confidence 998788899999999999999999999999999999999999974 4577788888999999999998765 45678899
Q ss_pred HHHHhccCCCCchhhhhcCCcHHHHHHhhhcccchHHHHHHHHHHHHhhCChhhhHHHhhccCcHHHHHHHhccCChHHH
Q 017249 174 ALHYLSTCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVST 253 (375)
Q Consensus 174 ~L~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~ 253 (375)
+|++|+..+.++..+++.|+++.|+.++.+. +..++..++++|.+|+...... .. ..++++.|+.+|.+.++.++
T Consensus 342 aL~~Ls~~~~~~~~i~~~g~l~~Ll~lL~~~--~~~~~~~a~~~L~~L~~~~~~~--~~-~~~~i~~Lv~lL~~~d~~vr 416 (780)
T 2z6g_A 342 VLKVLSVCSSNKPAIVEAGGMQALGLHLTDP--SQRLVQNCLWTLRNLSDAATKQ--EG-MEGLLGTLVQLLGSDDINVV 416 (780)
T ss_dssp HHHHHHTSTTHHHHHHHTTHHHHHGGGTTCS--CHHHHHHHHHHHHHHHTTCTTC--SC-CHHHHHHHHHHTTCSCHHHH
T ss_pred HHHHhhcChHHHHHHHHhchHHHHHHHHcCC--chHHHHHHHHHHHHHhccchhh--hh-hhhHHHHHHHHHcCCCHHHH
Confidence 9999998888899999999999999999876 4467888999999999765332 11 34789999999999999999
Q ss_pred HHHHHHHHHhcccCcHHHHHHHHHcCChHHHHHHhhh-CC-HHHHHHHHHHHHHhhcCChh------hhhhhhhHHHHHH
Q 017249 254 QHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVE-GT-FEAQERARTLLDLLRDTPQE------KRLSSSVLEKIVY 325 (375)
Q Consensus 254 ~~a~~~L~~l~~~~~~~~~~~l~~~g~v~~L~~ll~~-~~-~~~~~~A~~~L~~l~~~~~~------~~~~~g~~~~l~~ 325 (375)
..|+++|.+|+.+. ++.+..+.+.|+++.|+.++.+ ++ +.+++.|+++|.+|+...++ .+...|+++.|+.
T Consensus 417 ~~A~~aL~~L~~~~-~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~~~~~~~~~v~~~~~l~~L~~ 495 (780)
T 2z6g_A 417 TCAAGILSNLTCNN-YKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVK 495 (780)
T ss_dssp HHHHHHHHHHTSSC-HHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhCC-HHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHcCCHHHHHH
Confidence 99999999999986 5778888999999999998876 33 49999999999999875422 5667889999998
Q ss_pred HHhhcCCChHHHHHHHHHHHHHHH
Q 017249 326 DIAARVDGADKAAETAKRLLQDMV 349 (375)
Q Consensus 326 ~l~~~~~g~~~~~~~a~~~l~~l~ 349 (375)
.|.. ...+..+..|..+|.+|.
T Consensus 496 lL~~--~~~~~v~~~A~~aL~nLa 517 (780)
T 2z6g_A 496 LLHP--PSHWPLIKATVGLIRNLA 517 (780)
T ss_dssp TTST--TCCHHHHHHHHHHHHHHH
T ss_pred HhcC--CChHHHHHHHHHHHHHHh
Confidence 8762 233588899999999986
No 31
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=99.94 E-value=5.7e-26 Score=196.34 Aligned_cols=198 Identities=17% Similarity=0.178 Sum_probs=176.5
Q ss_pred hHHHHHHHHhcCCCH--HHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhccChhh
Q 017249 25 ALIEELSDKLINGDL--ETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIESSLLALLNLAVRNERN 102 (375)
Q Consensus 25 ~~l~~Lv~~L~s~~~--~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~~~~~~~~~a~~~L~~L~~~~~~~ 102 (375)
-.++.+|++|+++++ +++..|++.|.+++..+ +.++..+++.|+||+|+++|+++++++++.|+++|+||+.+++++
T Consensus 8 ~~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~-~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~n 86 (233)
T 3tt9_A 8 MTLERAVSMLEADHMLPSRISAAATFIQHECFQK-SEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDN 86 (233)
T ss_dssp CCHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHC-HHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHH
T ss_pred ccHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCC-cHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHH
Confidence 468999999999888 88999999999999988 789999999999999999999999999999999999999988999
Q ss_pred HHHHHHcCChHHHHHhhc-CCChHHHHHHHHHHHHhhccCCChhHHHhcCChHHHHHHhc----------------cCCH
Q 017249 103 KVKIATAGAIPPLVELLK-FQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILH----------------SGSV 165 (375)
Q Consensus 103 r~~i~~~g~i~~Lv~lL~-~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~l~~L~~lL~----------------~~~~ 165 (375)
|..+.+.|++|+|+++|. +++.++++.++.+||||+..++++..+... ++++|++++. ..+.
T Consensus 87 k~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k~~i~~~-~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~ 165 (233)
T 3tt9_A 87 KLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKNLMITE-ALLTLTENIIIPFSGWPEGDYPKANGLLDF 165 (233)
T ss_dssp HHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGHHHHHHH-HHHHHCCCCCHHHHCCCGGGCCCCCTTCCH
T ss_pred HHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhHHHHHhc-cHHHHHHHHhccccCCcccccccccccchH
Confidence 999999999999999998 578999999999999999999999888864 6999998763 1256
Q ss_pred HHHHHHHHHHHHhccC-CCCchhhhhc-CCcHHHHHHhhhc----ccchHHHHHHHHHHHHhhCC
Q 017249 166 QGRVDAVTALHYLSTC-KENSSPILDA-TAVPPLINLLKDC----KKYSKFAEKATALLEILSSS 224 (375)
Q Consensus 166 ~~~~~a~~~L~~L~~~-~~~~~~i~~~-g~i~~Lv~ll~~~----~~~~~~~~~a~~~L~~l~~~ 224 (375)
.++++|.++|+||+.. ++++..+.+. |+++.|+.+++.+ ..+.+.+++|..+|+||+..
T Consensus 166 ~v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~ 230 (233)
T 3tt9_A 166 DIFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQ 230 (233)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhh
Confidence 8999999999999975 4888888875 6789999999864 23457889999999999974
No 32
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=99.93 E-value=6.4e-26 Score=196.04 Aligned_cols=197 Identities=21% Similarity=0.237 Sum_probs=175.3
Q ss_pred ChHHHHHhhCCCCH--HHHHHHHHHHHHhhccChhhHHHHHHcCChHHHHHhhcCCChHHHHHHHHHHHHhhcc-CCChh
Q 017249 69 VVQPLVLMLVSPNL--DAIESSLLALLNLAVRNERNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAA-APNKP 145 (375)
Q Consensus 69 ~v~~Lv~~L~~~~~--~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~-~~~~~ 145 (375)
.++.||++|.++++ +++..|+++|.+++.+++++|..+++.|+||+|+++|+++++++++.|+++|.||+.. ++++.
T Consensus 9 ~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk~ 88 (233)
T 3tt9_A 9 TLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNKL 88 (233)
T ss_dssp CHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred cHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHH
Confidence 58999999999887 8999999999999988899999999999999999999999999999999999999985 56899
Q ss_pred HHHhcCChHHHHHHhc-cCCHHHHHHHHHHHHHhccCCCCchhhhhcCCcHHHHHHhh---hcc-----------cchHH
Q 017249 146 AIAASGAAPLLVQILH-SGSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLK---DCK-----------KYSKF 210 (375)
Q Consensus 146 ~i~~~~~l~~L~~lL~-~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~ll~---~~~-----------~~~~~ 210 (375)
.+.+.|++++|+++|+ +++..+++.|+.+|+||+..++++..+++. +++.|+.++. ++. .+..+
T Consensus 89 ~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k~~i~~~-~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~~v 167 (233)
T 3tt9_A 89 EVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKNLMITE-ALLTLTENIIIPFSGWPEGDYPKANGLLDFDI 167 (233)
T ss_dssp HHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGHHHHHHH-HHHHHCCCCCHHHHCCCGGGCCCCCTTCCHHH
T ss_pred HHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhHHHHHhc-cHHHHHHHHhccccCCcccccccccccchHHH
Confidence 9999999999999998 478999999999999999999999988874 6999998763 111 24578
Q ss_pred HHHHHHHHHHhhC-ChhhhHHHhhccCcHHHHHHHhcc------CChHHHHHHHHHHHHhccc
Q 017249 211 AEKATALLEILSS-SEEGRIAITNSDGGILTLVETVED------GSLVSTQHAVGALLSLCQS 266 (375)
Q Consensus 211 ~~~a~~~L~~l~~-~~~~~~~~~~~~g~v~~Lv~lL~~------~~~~~~~~a~~~L~~l~~~ 266 (375)
+++|.++|+||+. ++++|+.+....|+|+.|+.+++. .+.+.++.|+.+|+||+..
T Consensus 168 ~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~ 230 (233)
T 3tt9_A 168 FYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQ 230 (233)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhh
Confidence 9999999999987 679999998667889999999974 2568999999999999875
No 33
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=99.93 E-value=3e-24 Score=211.75 Aligned_cols=322 Identities=15% Similarity=0.111 Sum_probs=259.0
Q ss_pred HhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhc-CChHHHHHhhCC-CCHHHHHHHHHHHHHhhccChh
Q 017249 24 QALIEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAA-GVVQPLVLMLVS-PNLDAIESSLLALLNLAVRNER 101 (375)
Q Consensus 24 ~~~l~~Lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~-g~v~~Lv~~L~~-~~~~~~~~a~~~L~~L~~~~~~ 101 (375)
.+..+.++++|.+++.+.+..|++.|..++.+. +.|+.+++. |+++.|++++++ .+..+.-.++.+|.||+...+.
T Consensus 333 ~~La~~~~~~L~~~~~~~~~~AvEgLaYLSl~~--~VKe~L~~d~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~ 410 (778)
T 3opb_A 333 KQLSEIFINAISRRIVPKVEMSVEALAYLSLKA--SVKIMIRSNESFTEILLTMIKSQKMTHCLYGLLVIMANLSTLPEE 410 (778)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHHHHTTSS--HHHHHHHHCHHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCCCC
T ss_pred HHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCH--HHHHHHHhCHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCCcc
Confidence 346778888888877777999999999999988 788888776 779999999995 6778899999999999974321
Q ss_pred --------------------------------------hHHHHHHcCChHHHHHhhcCCChHHHHHHHHHHHHhhccCCC
Q 017249 102 --------------------------------------NKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPN 143 (375)
Q Consensus 102 --------------------------------------~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~ 143 (375)
++..+.+.|++|.|+.++++.++.+++.++++|.+|+.++++
T Consensus 411 ~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d~~~ 490 (778)
T 3opb_A 411 XXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYILRTELISFLKREMHNLSPNCKQQVVRIIYNITRSKNF 490 (778)
T ss_dssp CCCCCC------------------CCTHHHHHHHHHHHHHHHTTTTTHHHHHHHHGGGSCHHHHHHHHHHHHHHHTSGGG
T ss_pred cchhhhhhhhhhhhccccCcccCcccccccchHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHH
Confidence 456677899999999999999999999999999999999899
Q ss_pred hhHHHhcCChHHHHHHhccCCHH---HHHHHHHHHHHhccCCCCchhhh--h-cCCcHHHHHHhhhcccc----------
Q 017249 144 KPAIAASGAAPLLVQILHSGSVQ---GRVDAVTALHYLSTCKENSSPIL--D-ATAVPPLINLLKDCKKY---------- 207 (375)
Q Consensus 144 ~~~i~~~~~l~~L~~lL~~~~~~---~~~~a~~~L~~L~~~~~~~~~i~--~-~g~i~~Lv~ll~~~~~~---------- 207 (375)
+..++..|++++|+++|.+++.. .+..|+.+|.+|+...+....+. . .|++++|+.+|..+...
T Consensus 491 R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~ 570 (778)
T 3opb_A 491 IPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQ 570 (778)
T ss_dssp HHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCC
T ss_pred HHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHHHcCCCccccchHHHHHHcCCCCCccccccccccc
Confidence 99999999999999999988654 79999999999985543222221 1 38999999999832111
Q ss_pred -h-HHHHHHHHHHHHhhCCh-----hhhHHHhhccCcHHHHHHHhccCChHHHHHHHHHHHHhcccCcHHHH-HHHHHc-
Q 017249 208 -S-KFAEKATALLEILSSSE-----EGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYR-QLILKE- 278 (375)
Q Consensus 208 -~-~~~~~a~~~L~~l~~~~-----~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~-~~l~~~- 278 (375)
. .-+..|+.+|.||+..+ +.+..++.+.|+++.|..+|.+++..++..|+++++||+.+. +.+ +.+...
T Consensus 571 ~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~~~--e~i~~k~~~~~ 648 (778)
T 3opb_A 571 IKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELISNMMSHP--LTIAAKFFNLE 648 (778)
T ss_dssp CCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHTSG--GGTGGGTSCCS
T ss_pred ccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHhCCc--HHHHHHHHhhc
Confidence 1 12457999999999876 347778843489999999999999999999999999999864 333 234322
Q ss_pred -----CChHHHHHHhhhCCHHHHHHHHHHHHHhhc-CCh--hhhhhh-hhHHHHHHHHhhcCCChHHHHHHHHHHHHHHH
Q 017249 279 -----GAIPGLLRLTVEGTFEAQERARTLLDLLRD-TPQ--EKRLSS-SVLEKIVYDIAARVDGADKAAETAKRLLQDMV 349 (375)
Q Consensus 279 -----g~v~~L~~ll~~~~~~~~~~A~~~L~~l~~-~~~--~~~~~~-g~~~~l~~~l~~~~~g~~~~~~~a~~~l~~l~ 349 (375)
+.++.|+.++.++++.+|+.|+++|.+++. ++. ..+++. ++++.++..+... ...+..+..+..++.+|.
T Consensus 649 ~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts~~~~ia~~ll~~~~gi~~Ll~lL~~~-~~~~~l~~R~~~~l~NL~ 727 (778)
T 3opb_A 649 NPQSLRNFNILVKLLQLSDVESQRAVAAIFANIATTIPLIAKELLTKKELIENAIQVFADQ-IDDIELRQRLLMLFFGLF 727 (778)
T ss_dssp SHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHHHHHTTCHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHH
T ss_pred CchhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcCCChHHHHHHHHccccHHHHHHHHhcc-CCCHHHHHHHHHHHHHHH
Confidence 248899999999999999999999999964 442 355554 7999999888732 245999999999999998
Q ss_pred H
Q 017249 350 Q 350 (375)
Q Consensus 350 ~ 350 (375)
.
T Consensus 728 ~ 728 (778)
T 3opb_A 728 E 728 (778)
T ss_dssp T
T ss_pred H
Confidence 5
No 34
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.93 E-value=2.1e-24 Score=185.62 Aligned_cols=201 Identities=26% Similarity=0.321 Sum_probs=180.9
Q ss_pred HHhhHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhccC
Q 017249 20 NQRKQALIEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIESSLLALLNLAVRN 99 (375)
Q Consensus 20 ~~~~~~~l~~Lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~~~~~~~~~a~~~L~~L~~~~ 99 (375)
.....+..+.|+.+|++++++++..|+++|.+++..+ ++.+..+.+.|+++.|+++|++++++++..|+++|.+++.++
T Consensus 7 ~~~~~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~-~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~ 85 (210)
T 4db6_A 7 HHHHGSELPQMVQQLNSPDQQELQSALRKLSQIASGG-NEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG 85 (210)
T ss_dssp ------CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSC-HHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSC
T ss_pred cccccchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCC-HHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCC
Confidence 3455677899999999999999999999999999887 789999999999999999999999999999999999999888
Q ss_pred hhhHHHHHHcCChHHHHHhhcCCChHHHHHHHHHHHHhhccCC-ChhHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHh
Q 017249 100 ERNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAP-NKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYL 178 (375)
Q Consensus 100 ~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~-~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~~L 178 (375)
+.++..+.+.|+++.|+.+|.++++.++..|+++|+|++...+ .+..+.+.|+++.|+++|++++..++..|+++|.+|
T Consensus 86 ~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l 165 (210)
T 4db6_A 86 NEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNI 165 (210)
T ss_dssp HHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999997654 456677899999999999999999999999999999
Q ss_pred ccC-CCCchhhhhcCCcHHHHHHhhhcccchHHHHHHHHHHHHhhC
Q 017249 179 STC-KENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSS 223 (375)
Q Consensus 179 ~~~-~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~ 223 (375)
+.. ++.+..+.+.|+++.|++++.++ +..+++.|+++|.+|+.
T Consensus 166 ~~~~~~~~~~~~~~g~i~~L~~ll~~~--~~~v~~~a~~aL~~l~~ 209 (210)
T 4db6_A 166 ASGGNEQKQAVKEAGALEKLEQLQSHE--NEKIQKEAQEALEKLQS 209 (210)
T ss_dssp HTSCHHHHHHHHHTTHHHHHHHGGGCS--CHHHHHHHHHHHHHHCC
T ss_pred HcCCcHHHHHHHHCCCHHHHHHHHhCC--CHHHHHHHHHHHHHHhc
Confidence 977 56778888999999999999975 55789999999999975
No 35
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=99.92 E-value=6e-24 Score=209.62 Aligned_cols=320 Identities=13% Similarity=0.101 Sum_probs=253.9
Q ss_pred ccchhhhHHHHHhhH-hHHHHHHHHhcC-CCHHHHHHHHHHHHHHHhhCCh-----------------------------
Q 017249 10 AATDQEEEAWNQRKQ-ALIEELSDKLIN-GDLETKIEAARDIRKVVKKSSL----------------------------- 58 (375)
Q Consensus 10 ~~~~~~~~~~~~~~~-~~l~~Lv~~L~s-~~~~~~~~a~~~l~~l~~~~~~----------------------------- 58 (375)
|.+.+.+.+..++.. +.++.|+.++++ ++.....-++.+|.|++...+.
T Consensus 360 YLSl~~~VKe~L~~d~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~ 439 (778)
T 3opb_A 360 YLSLKASVKIMIRSNESFTEILLTMIKSQKMTHCLYGLLVIMANLSTLPEEXXXXXXXXXXXXXXXXXXXPAADKVGAEK 439 (778)
T ss_dssp HHTTSSHHHHHHHHCHHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCCCCCCCCCC------------------CCTHH
T ss_pred HHhCCHHHHHHHHhCHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCCcccchhhhhhhhhhhhccccCcccCcccccc
Confidence 445667777777744 459999999984 7788899999999999874410
Q ss_pred -------h-hHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhccChhhHHHHHHcCChHHHHHhhcCCChH---HH
Q 017249 59 -------K-TRSEFAAAGVVQPLVLMLVSPNLDAIESSLLALLNLAVRNERNKVKIATAGAIPPLVELLKFQNGT---LR 127 (375)
Q Consensus 59 -------~-~~~~~~~~g~v~~Lv~~L~~~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~---~~ 127 (375)
+ ++..+.+.|+++.|+.+++++++.+++.++++|.+|+. ++++|..+++.|++++|+.+|.+.... .+
T Consensus 440 ~~~~~v~~~~~~~l~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~-d~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k 518 (778)
T 3opb_A 440 AAKEDILLFNEKYILRTELISFLKREMHNLSPNCKQQVVRIIYNITR-SKNFIPQLAQQGAVKIILEYLANKQDIGEPIR 518 (778)
T ss_dssp HHHHHHHHHHHHHTTTTTHHHHHHHHGGGSCHHHHHHHHHHHHHHHT-SGGGHHHHHHTTHHHHHHHHTTCC---CCHHH
T ss_pred cchHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcC-CHHHHHHHHHCCCHHHHHHHHhcCCCcchHHH
Confidence 0 45667788999999999999999999999999999998 689999999999999999999888544 89
Q ss_pred HHHHHHHHHhhccCCChhHHH---hcCChHHHHHHhcc-CCH-------------HHHHHHHHHHHHhccCCC-----Cc
Q 017249 128 ELAAAAILTLSAAAPNKPAIA---ASGAAPLLVQILHS-GSV-------------QGRVDAVTALHYLSTCKE-----NS 185 (375)
Q Consensus 128 ~~a~~~L~~Ls~~~~~~~~i~---~~~~l~~L~~lL~~-~~~-------------~~~~~a~~~L~~L~~~~~-----~~ 185 (375)
..|+.+|.++....+....+. ..+++++|+.+|.. +.. .-+..|+.+|.||+..++ .+
T Consensus 519 ~~AA~ALArLlis~np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r 598 (778)
T 3opb_A 519 ILGCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVC 598 (778)
T ss_dssp HHHHHHHHHHHHTSCHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHH
Confidence 999999999997665444432 13899999999983 211 127799999999998863 36
Q ss_pred hhhhhc-CCcHHHHHHhhhcccchHHHHHHHHHHHHhhCChhhh-HHHhhcc-----CcHHHHHHHhccCChHHHHHHHH
Q 017249 186 SPILDA-TAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGR-IAITNSD-----GGILTLVETVEDGSLVSTQHAVG 258 (375)
Q Consensus 186 ~~i~~~-g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~~~~~~-~~~~~~~-----g~v~~Lv~lL~~~~~~~~~~a~~ 258 (375)
..++.. |+++.|..++.++ +..++.+|+++++||+.+++.+ ..+.... +.++.|+.+++.++..+|..|+|
T Consensus 599 ~~Ii~~~ga~~~L~~LL~s~--n~~VrrAA~elI~NL~~~~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAag 676 (778)
T 3opb_A 599 KHIVSTKVYWSTIENLMLDE--NVPLQRSTLELISNMMSHPLTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAA 676 (778)
T ss_dssp HHHHHSHHHHHHHHHGGGCS--SHHHHHHHHHHHHHHHTSGGGTGGGTSCCSSHHHHHHHHHHHHGGGCSCHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHhCC--CHHHHHHHHHHHHHHhCCcHHHHHHHHhhcCchhhccHHHHHHHHcCCCHHHHHHHHH
Confidence 778885 9999999999876 4578999999999999999875 3444211 23788999999999999999999
Q ss_pred HHHHhcccCcHHHHHHHHHc-CChHHHHHHhhh--CCHHHHHHHHHHHHHhhcCC----hh----hhh-hhhhHHHHHHH
Q 017249 259 ALLSLCQSCRDKYRQLILKE-GAIPGLLRLTVE--GTFEAQERARTLLDLLRDTP----QE----KRL-SSSVLEKIVYD 326 (375)
Q Consensus 259 ~L~~l~~~~~~~~~~~l~~~-g~v~~L~~ll~~--~~~~~~~~A~~~L~~l~~~~----~~----~~~-~~g~~~~l~~~ 326 (375)
+|++++... +...+.+++. ++++.++.++.+ .++.++..++.++.|+.+.. .+ ... .......+...
T Consensus 677 ALAnLts~~-~~ia~~ll~~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 755 (778)
T 3opb_A 677 IFANIATTI-PLIAKELLTKKELIENAIQVFADQIDDIELRQRLLMLFFGLFEVIPDNGTNEVYPLLQENQKLKDALNMS 755 (778)
T ss_dssp HHHHHHHHC-HHHHHHHTTCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTCCSTTTTSCCHHHHSCHHHHHHHHHH
T ss_pred HHHHhcCCC-hHHHHHHHHccccHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhhccCCChHHHHHHhcChHHHHHHHHH
Confidence 999997665 4667777775 899999999998 89999999999999999732 21 222 34466677776
Q ss_pred HhhcCCC
Q 017249 327 IAARVDG 333 (375)
Q Consensus 327 l~~~~~g 333 (375)
|.+..++
T Consensus 756 lk~~~~~ 762 (778)
T 3opb_A 756 LKRGDSG 762 (778)
T ss_dssp HSSSSSC
T ss_pred HhCCCch
Confidence 6654433
No 36
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.92 E-value=6.3e-24 Score=182.67 Aligned_cols=198 Identities=26% Similarity=0.310 Sum_probs=177.9
Q ss_pred HhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhccChhhHHHHHHcCChHHHHHhhcCCChHHHHHHHHHHHHhhccC-CC
Q 017249 65 AAAGVVQPLVLMLVSPNLDAIESSLLALLNLAVRNERNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAA-PN 143 (375)
Q Consensus 65 ~~~g~v~~Lv~~L~~~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~-~~ 143 (375)
...|+.+.|+.+|++++++++..|+++|.+++.++++.+..+.+.|+++.|+.+|+++++.++..|+++|.+++... +.
T Consensus 9 ~~~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~ 88 (210)
T 4db6_A 9 HHGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQ 88 (210)
T ss_dssp ----CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred cccchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHH
Confidence 34578999999999999999999999999999878999999999999999999999999999999999999999654 56
Q ss_pred hhHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCC-CCchhhhhcCCcHHHHHHhhhcccchHHHHHHHHHHHHhh
Q 017249 144 KPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTCK-ENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILS 222 (375)
Q Consensus 144 ~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~~L~~~~-~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~ 222 (375)
+..+.+.|+++.|+.+|+++++.++..|+++|.+|+..+ +.+..+.+.|+++.|++++.++ +..++..++++|.|++
T Consensus 89 ~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~--~~~v~~~a~~aL~~l~ 166 (210)
T 4db6_A 89 IQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSP--NEQILQEALWALSNIA 166 (210)
T ss_dssp HHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCS--CHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCC--CHHHHHHHHHHHHHHH
Confidence 788889999999999999999999999999999999654 5567788899999999999976 4578999999999999
Q ss_pred CC-hhhhHHHhhccCcHHHHHHHhccCChHHHHHHHHHHHHhcc
Q 017249 223 SS-EEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQ 265 (375)
Q Consensus 223 ~~-~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~ 265 (375)
.. +..+..+. +.|+++.|+.++.++++.+++.|+++|.+++.
T Consensus 167 ~~~~~~~~~~~-~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 209 (210)
T 4db6_A 167 SGGNEQKQAVK-EAGALEKLEQLQSHENEKIQKEAQEALEKLQS 209 (210)
T ss_dssp TSCHHHHHHHH-HTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC
T ss_pred cCCcHHHHHHH-HCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence 87 66676666 68999999999999999999999999999975
No 37
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=99.89 E-value=7.9e-22 Score=177.61 Aligned_cols=239 Identities=15% Similarity=0.104 Sum_probs=192.1
Q ss_pred hHhHHHHHHHHhcCC------------CHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHH-hhCCCCHHHHHHHH
Q 017249 23 KQALIEELSDKLING------------DLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVL-MLVSPNLDAIESSL 89 (375)
Q Consensus 23 ~~~~l~~Lv~~L~s~------------~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~-~L~~~~~~~~~~a~ 89 (375)
....++..+..|.++ +.+.+..|+..|.+++... ++...+.+.|++++|+. +|.+++++++..|+
T Consensus 26 ~~~~mk~~l~vl~~~~~~~~~~~~~~~~~e~k~~Al~~L~~lv~~~--dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa 103 (296)
T 1xqr_A 26 EVEQMKSCLRVLSQPMPPTAGEAEQAADQQEREGALELLADLCENM--DNAADFCQLSGMHLLVGRYLEAGAAGLRWRAA 103 (296)
T ss_dssp HHHHHHHHHHHHHSCCCSSCCHHHHHHHHHHHHHHHHHHHHHHTSH--HHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCcccccccccCCCHHHHHHHHHHHHHHHhCh--hhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHH
Confidence 355677788888764 2367888999999999876 68888899999999999 99999999999999
Q ss_pred HHHHHhhccChhhHHHHHHcCChHHHHHhhcCC-ChHHHHHHHHHHHHhhccCC-ChhHHHhcCChHHHHHHhccCCHHH
Q 017249 90 LALLNLAVRNERNKVKIATAGAIPPLVELLKFQ-NGTLRELAAAAILTLSAAAP-NKPAIAASGAAPLLVQILHSGSVQG 167 (375)
Q Consensus 90 ~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~-~~~~~~~a~~~L~~Ls~~~~-~~~~i~~~~~l~~L~~lL~~~~~~~ 167 (375)
++|++++.+++.++..+++.|++|+|+.+|++. ++.+++.|+++|.|++.+.+ ....+...|+++.|+.+|++++..+
T Consensus 104 ~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v 183 (296)
T 1xqr_A 104 QLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKL 183 (296)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHH
T ss_pred HHHHHHHhCCHHHHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHH
Confidence 999999999999999999999999999999864 88999999999999997654 4667778899999999999999999
Q ss_pred HHHHHHHHHHhccC-CCCchhhhhcCCcHHHHHHhhhcccchHHHHHHHHHHHHhhCC-hhhhHHHhhccCcHHHH----
Q 017249 168 RVDAVTALHYLSTC-KENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSS-EEGRIAITNSDGGILTL---- 241 (375)
Q Consensus 168 ~~~a~~~L~~L~~~-~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~~g~v~~L---- 241 (375)
+..|+|+|.+|+.. ++.+..+++.|+++.|+.+|.+. +..+++.++++|.+|+.. +............+..+
T Consensus 184 ~~~A~~aLs~L~~~~~~~~~~vv~~g~i~~Lv~LL~~~--d~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~l~~lL~~~ 261 (296)
T 1xqr_A 184 KVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTE--HSPFHEHVLGALCSLVTDFPQGVRECREPELGLEELLRHR 261 (296)
T ss_dssp HHHHHHHHHHHHHHCGGGHHHHHHTTHHHHHHHHHTSC--CSTHHHHHHHHHHHHHTTCHHHHHHHHCGGGCHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHcCCHHHHHHHHcCC--ChhHHHHHHHHHHHHHhCChhHHHHHhccHHHHHHHHHHH
Confidence 99999999999865 57788899999999999999986 346889999999999976 33333222111112222
Q ss_pred HHHhc-cC-ChHHHHHHHHHHHHhcc
Q 017249 242 VETVE-DG-SLVSTQHAVGALLSLCQ 265 (375)
Q Consensus 242 v~lL~-~~-~~~~~~~a~~~L~~l~~ 265 (375)
+.-|. +. .....+.|..++.++..
T Consensus 262 ~~~lq~~e~~~e~~~~~~~il~~~f~ 287 (296)
T 1xqr_A 262 CQLLQQHEEYQEELEFCEKLLQTCFS 287 (296)
T ss_dssp HHHHTTCGGGHHHHHHHHHHHHHHCC
T ss_pred HHHccchHHHHHHHHHHHHHHHHHcC
Confidence 22233 22 34566677777766553
No 38
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=99.88 E-value=2.3e-21 Score=174.61 Aligned_cols=222 Identities=17% Similarity=0.113 Sum_probs=182.2
Q ss_pred hHHHHHHHHHHHHhhccCCChhHHHhcCChHHHHH-HhccCCHHHHHHHHHHHHHhccCC-CCchhhhhcCCcHHHHHHh
Q 017249 124 GTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQ-ILHSGSVQGRVDAVTALHYLSTCK-ENSSPILDATAVPPLINLL 201 (375)
Q Consensus 124 ~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~l~~L~~-lL~~~~~~~~~~a~~~L~~L~~~~-~~~~~i~~~g~i~~Lv~ll 201 (375)
.+-+..|+..|.+++.+.++...+...|++++|+. +|.++++.++..|+|+|.+++.++ ..+..+++.|++++|+.+|
T Consensus 54 ~e~k~~Al~~L~~lv~~~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL 133 (296)
T 1xqr_A 54 QQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLL 133 (296)
T ss_dssp HHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhChhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHH
Confidence 45678899999999988778888888999999999 999999999999999999999764 5677888999999999999
Q ss_pred hhcccchHHHHHHHHHHHHhhCC-hhhhHHHhhccCcHHHHHHHhccCChHHHHHHHHHHHHhcccCcHHHHHHHHHcCC
Q 017249 202 KDCKKYSKFAEKATALLEILSSS-EEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGA 280 (375)
Q Consensus 202 ~~~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~g~ 280 (375)
.++. +..+++.|+++|+|++.+ +.....+. ..|+++.|+.+|.+++..++..|+|+|.+++.++ ++.++.+++.|+
T Consensus 134 ~~~~-~~~v~~~A~~ALsnl~~~~~~~~~~~~-~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~-~~~~~~vv~~g~ 210 (296)
T 1xqr_A 134 DRDA-CDTVRVKALFAISCLVREQEAGLLQFL-RLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGH-PEHKGTLCSMGM 210 (296)
T ss_dssp HHCS-CHHHHHHHHHHHHHHHTTCHHHHHHHH-HTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC-GGGHHHHHHTTH
T ss_pred ccCC-CHHHHHHHHHHHHHHHcCCcHHHHHHH-HCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCC-hHHHHHHHHcCC
Confidence 8743 457889999999999975 55555666 6899999999999999999999999999999886 578899999999
Q ss_pred hHHHHHHhhhCCHHHHHHHHHHHHHhhcCChhhhhh--h------hhHHHHHHHHhhcCCChHHHHHHHHHHHHHHH
Q 017249 281 IPGLLRLTVEGTFEAQERARTLLDLLRDTPQEKRLS--S------SVLEKIVYDIAARVDGADKAAETAKRLLQDMV 349 (375)
Q Consensus 281 v~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~~~~~~--~------g~~~~l~~~l~~~~~g~~~~~~~a~~~l~~l~ 349 (375)
++.|+.++.++++.+++.|+.+|.+|....+..... . ..++.-...|+.+.. .....++|..+++.+.
T Consensus 211 i~~Lv~LL~~~d~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~l~~lL~~~~~~lq~~e~-~~e~~~~~~~il~~~f 286 (296)
T 1xqr_A 211 VQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPELGLEELLRHRCQLLQQHEE-YQEELEFCEKLLQTCF 286 (296)
T ss_dssp HHHHHHHHTSCCSTHHHHHHHHHHHHHTTCHHHHHHHHCGGGCHHHHHHHHHHHHTTCGG-GHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHcCCChhHHHHHHHHHHHHHhCChhHHHHHhccHHHHHHHHHHHHHHccchHH-HHHHHHHHHHHHHHHc
Confidence 999999999999999999999999999886432211 1 123333334432221 2566677888877776
No 39
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=99.73 E-value=1.8e-15 Score=145.82 Aligned_cols=326 Identities=13% Similarity=0.103 Sum_probs=246.3
Q ss_pred hhHhHHHHHHHHhc-CCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCCC--CHHHHHHHHHHHHHhhcc
Q 017249 22 RKQALIEELSDKLI-NGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSP--NLDAIESSLLALLNLAVR 98 (375)
Q Consensus 22 ~~~~~l~~Lv~~L~-s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~~--~~~~~~~a~~~L~~L~~~ 98 (375)
...+.++.|+..++ +.-.+.++.|+..|..+++.. + . .+..++++.|+..|+.. |.++...++.+|.++...
T Consensus 18 s~~etI~~L~~Rl~~~tl~eDRR~Av~~Lk~~sk~y-~---~-~Vg~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~ 92 (651)
T 3grl_A 18 TEAETIQKLCDRVASSTLLDDRRNAVRALKSLSKKY-R---L-EVGIQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISN 92 (651)
T ss_dssp CHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTTTT-T---T-HHHHHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCC
T ss_pred ChhhHHHHHHHHHhhccchhHHHHHHHHHHHHHHHh-H---H-HhhhhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCC
Confidence 45778999999997 567899999999999998665 2 2 23467799999999764 789999999999887654
Q ss_pred Chh-----------------hHHHHH-HcCChHHHHHhhcCCChHHHHHHHHHHHHhhccCC--ChhHHH-hcCChHHHH
Q 017249 99 NER-----------------NKVKIA-TAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAP--NKPAIA-ASGAAPLLV 157 (375)
Q Consensus 99 ~~~-----------------~r~~i~-~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~--~~~~i~-~~~~l~~L~ 157 (375)
++. +.+.+. +.+.++.|+.+|++.+..+|..++.+|..|+.+.+ .+..+. .+++++.|+
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv 172 (651)
T 3grl_A 93 DEEEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLM 172 (651)
T ss_dssp C--------------CHHHHHHHHHHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHH
T ss_pred CCcccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHH
Confidence 332 122343 36889999999999999999999999999998765 466666 669999999
Q ss_pred HHhccCCHHHHHHHHHHHHHhccCCCCchhhhh-cCCcHHHHHHhhhccc--chHHHHHHHHHHHHhhCC-hhhhHHHhh
Q 017249 158 QILHSGSVQGRVDAVTALHYLSTCKENSSPILD-ATAVPPLINLLKDCKK--YSKFAEKATALLEILSSS-EEGRIAITN 233 (375)
Q Consensus 158 ~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~-~g~i~~Lv~ll~~~~~--~~~~~~~a~~~L~~l~~~-~~~~~~~~~ 233 (375)
.+|++....++..++.+|.+|+.++...+.++. .|+++.|++++..... ...+..-|+.+|.||... +.|+..+.
T Consensus 173 ~lL~d~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~Fr- 251 (651)
T 3grl_A 173 DLLADSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFK- 251 (651)
T ss_dssp GGGGCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHH-
T ss_pred HHHhCchHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHH-
Confidence 999999999999999999999998877766665 6999999999987532 335678899999999975 56777666
Q ss_pred ccCcHHHHHHHhccCChH------HHH---HHHHHHHHhcccCc-----HHHHHHHHHcCChHHHHHHhhhC--CHHHHH
Q 017249 234 SDGGILTLVETVEDGSLV------STQ---HAVGALLSLCQSCR-----DKYRQLILKEGAIPGLLRLTVEG--TFEAQE 297 (375)
Q Consensus 234 ~~g~v~~Lv~lL~~~~~~------~~~---~a~~~L~~l~~~~~-----~~~~~~l~~~g~v~~L~~ll~~~--~~~~~~ 297 (375)
+.|+++.|..+|..+.+. ... .++.++.-|+..++ ..++..+.+.|+++.|++++... +..++.
T Consensus 252 Et~~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~ 331 (651)
T 3grl_A 252 EGSYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTILMATGVPADILT 331 (651)
T ss_dssp HTTCGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHH
T ss_pred HcCCHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCCCHHHHHHHHccCCCCHHHHH
Confidence 789999999999754321 122 36667777766532 35678899999999999988754 678999
Q ss_pred HHHHHHHHhhcCChh---hhhh---------hhhHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHHH
Q 017249 298 RARTLLDLLRDTPQE---KRLS---------SSVLEKIVYDIAARVDGADKAAETAKRLLQDMVQRSMEL 355 (375)
Q Consensus 298 ~A~~~L~~l~~~~~~---~~~~---------~g~~~~l~~~l~~~~~g~~~~~~~a~~~l~~l~~~s~~~ 355 (375)
.|..++..+.+.++. .+.+ .-++..|+..+. +.. ....+-.|..+++-++....+-
T Consensus 332 ~Al~tla~~irgN~~~Q~~fa~~~vp~~~~~p~li~lL~~~~~-~~~-~~~lR~Aa~~cl~ay~~~N~~~ 399 (651)
T 3grl_A 332 ETINTVSEVIRGCQVNQDYFASVNAPSNPPRPAIVVLLMSMVN-ERQ-PFVLRCAVLYCFQCFLYKNQKG 399 (651)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHCEESSSSCEEHHHHHHHHHTC-TTS-CHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHhhccCCCCCCcChHHHHHHHHhc-ccc-cHHHHHHHHHHHHHHHhCCHHH
Confidence 999999988877733 2221 113333333222 222 3677777888888887555433
No 40
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=99.66 E-value=5.1e-14 Score=135.86 Aligned_cols=287 Identities=13% Similarity=0.090 Sum_probs=224.7
Q ss_pred hHhHHHHHHHHhcC--CCHHHHHHHHHHHHHHHhhCChh----------------hHHHHHh-cCChHHHHHhhCCCCHH
Q 017249 23 KQALIEELSDKLIN--GDLETKIEAARDIRKVVKKSSLK----------------TRSEFAA-AGVVQPLVLMLVSPNLD 83 (375)
Q Consensus 23 ~~~~l~~Lv~~L~s--~~~~~~~~a~~~l~~l~~~~~~~----------------~~~~~~~-~g~v~~Lv~~L~~~~~~ 83 (375)
...+++.|+..|+. .|.+....++.+|.++.....++ +.+.+.+ .+.++.|+.+|++.+..
T Consensus 58 g~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~df~ 137 (651)
T 3grl_A 58 GIQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEEEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFDFH 137 (651)
T ss_dssp HHHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC--------------CHHHHHHHHHHHSTHHHHHHHHHTTCCCHH
T ss_pred hhhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCccHH
Confidence 46679999999984 58888889999998877654111 2234543 47899999999999999
Q ss_pred HHHHHHHHHHHhhccChh-hHHHHHH-cCChHHHHHhhcCCChHHHHHHHHHHHHhhccCCC-hhHHHhcCChHHHHHHh
Q 017249 84 AIESSLLALLNLAVRNER-NKVKIAT-AGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPN-KPAIAASGAAPLLVQIL 160 (375)
Q Consensus 84 ~~~~a~~~L~~L~~~~~~-~r~~i~~-~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~-~~~i~~~~~l~~L~~lL 160 (375)
++..++..|..|+...+. ++..+.. .++++.|+.+|.+....+|..++..|.+|+.+... +..+.-.|+++.|+.++
T Consensus 138 vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii 217 (651)
T 3grl_A 138 VRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDII 217 (651)
T ss_dssp HHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCchHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHH
Confidence 999999999999988877 8899996 59999999999999999999999999999998765 55556779999999999
Q ss_pred ccCCH----HHHHHHHHHHHHhccCC-CCchhhhhcCCcHHHHHHhhhcccc----hHHHHH---HHHHHHHhhCC----
Q 017249 161 HSGSV----QGRVDAVTALHYLSTCK-ENSSPILDATAVPPLINLLKDCKKY----SKFAEK---ATALLEILSSS---- 224 (375)
Q Consensus 161 ~~~~~----~~~~~a~~~L~~L~~~~-~~~~~i~~~g~i~~Lv~ll~~~~~~----~~~~~~---a~~~L~~l~~~---- 224 (375)
..+.. .+...++.+|.||...+ .|+..+.+.|+++.|..++..+.+. +....+ ++.+++-|+..
T Consensus 218 ~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~ 297 (651)
T 3grl_A 218 TEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPP 297 (651)
T ss_dssp HHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCH
T ss_pred HhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 87653 78999999999999775 5888899999999999999754221 112223 56666666543
Q ss_pred ---hhhhHHHhhccCcHHHHHHHhccC--ChHHHHHHHHHHHHhcccCcHHHHHHHHHcC---------ChHHHHHHhhh
Q 017249 225 ---EEGRIAITNSDGGILTLVETVEDG--SLVSTQHAVGALLSLCQSCRDKYRQLILKEG---------AIPGLLRLTVE 290 (375)
Q Consensus 225 ---~~~~~~~~~~~g~v~~Lv~lL~~~--~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~g---------~v~~L~~ll~~ 290 (375)
+.+++.+. +.|+++.|++++... ...++..|+.+++.+..++ +..++.+.+.. ++..|+.++.+
T Consensus 298 ~~t~~nQ~~~~-~~g~l~~Ll~ll~~~~~p~~i~~~Al~tla~~irgN-~~~Q~~fa~~~vp~~~~~p~li~lL~~~~~~ 375 (651)
T 3grl_A 298 GATSSCQKAMF-QCGLLQQLCTILMATGVPADILTETINTVSEVIRGC-QVNQDYFASVNAPSNPPRPAIVVLLMSMVNE 375 (651)
T ss_dssp HHHHHHHHHHH-HTTHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHTTC-HHHHHHHHHCEESSSSCEEHHHHHHHHHTCT
T ss_pred CCCHHHHHHHH-HCCCHHHHHHHHccCCCCHHHHHHHHHHHHHHHhCC-HHHHHHHhhccCCCCCCcChHHHHHHHHhcc
Confidence 35677777 689999999998764 5788999999999999887 57777777633 33334444544
Q ss_pred -CCHHHHHHHHHHHHHhhcCCh
Q 017249 291 -GTFEAQERARTLLDLLRDTPQ 311 (375)
Q Consensus 291 -~~~~~~~~A~~~L~~l~~~~~ 311 (375)
....+|-.|+.++..+...+.
T Consensus 376 ~~~~~lR~Aa~~cl~ay~~~N~ 397 (651)
T 3grl_A 376 RQPFVLRCAVLYCFQCFLYKNQ 397 (651)
T ss_dssp TSCHHHHHHHHHHHHHHHTTCH
T ss_pred cccHHHHHHHHHHHHHHHhCCH
Confidence 357888888889998876663
No 41
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.63 E-value=5e-14 Score=126.17 Aligned_cols=264 Identities=17% Similarity=0.072 Sum_probs=198.2
Q ss_pred hhHHHHHhhHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHH
Q 017249 15 EEEAWNQRKQALIEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIESSLLALLN 94 (375)
Q Consensus 15 ~~~~~~~~~~~~l~~Lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~~~~~~~~~a~~~L~~ 94 (375)
....+.+.....++.|+..|.++++.++..|++.|.++... +.++.|+.+|.++++.++..|+++|..
T Consensus 13 ~~~l~~~~~~~~i~~L~~~L~~~~~~vr~~A~~~L~~~~~~------------~~~~~L~~~l~d~~~~vR~~A~~aL~~ 80 (280)
T 1oyz_A 13 EYGLYNQCKKLNDDELFRLLDDHNSLKRISSARVLQLRGGQ------------DAVRLAIEFCSDKNYIRRDIGAFILGQ 80 (280)
T ss_dssp THHHHHHHHTSCHHHHHHHTTCSSHHHHHHHHHHHHHHCCH------------HHHHHHHHHHTCSSHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHhhHHHHHHHHHcCCHHHHHHHHHHHHccCCc------------hHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 33445566777899999999999999999999999987521 247889999999999999999999999
Q ss_pred hhccChhhHHHHHHcCChHHHH-HhhcCCChHHHHHHHHHHHHhhccCCChhHHHhcCChHHHHHHhccCCHHHHHHHHH
Q 017249 95 LAVRNERNKVKIATAGAIPPLV-ELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHSGSVQGRVDAVT 173 (375)
Q Consensus 95 L~~~~~~~r~~i~~~g~i~~Lv-~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~ 173 (375)
+..... .... .++.|. .++.+.++.++..++++|.++...... .....++.|+.+++++++.++..++.
T Consensus 81 l~~~~~-~~~~-----l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~~----~~~~~~~~L~~~l~d~~~~vR~~a~~ 150 (280)
T 1oyz_A 81 IKICKK-CEDN-----VFNILNNMALNDKSACVRATAIESTAQRCKKNPI----YSPKIVEQSQITAFDKSTNVRRATAF 150 (280)
T ss_dssp SCCCTT-THHH-----HHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGG----GHHHHHHHHHHHTTCSCHHHHHHHHH
T ss_pred hccccc-cchH-----HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCc----ccHHHHHHHHHHhhCCCHHHHHHHHH
Confidence 875322 1111 223344 245678999999999999998643221 12356889999999999999999999
Q ss_pred HHHHhccCCCCchhhhhcCCcHHHHHHhhhcccchHHHHHHHHHHHHhhCChhhhHHHhhccCcHHHHHHHhccCChHHH
Q 017249 174 ALHYLSTCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVST 253 (375)
Q Consensus 174 ~L~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~ 253 (375)
+|.++.. .+.++.|+.++.++ +..++..+.++|..+... ....++.|+.++.++++.++
T Consensus 151 aL~~~~~----------~~~~~~L~~~l~d~--~~~vr~~a~~aL~~~~~~---------~~~~~~~L~~~l~d~~~~vR 209 (280)
T 1oyz_A 151 AISVIND----------KATIPLLINLLKDP--NGDVRNWAAFAININKYD---------NSDIRDCFVEMLQDKNEEVR 209 (280)
T ss_dssp HHHTC-------------CCHHHHHHHHTCS--SHHHHHHHHHHHHHHTCC---------CHHHHHHHHHHTTCSCHHHH
T ss_pred HHHhcCC----------HHHHHHHHHHHcCC--CHHHHHHHHHHHHhhccC---------cHHHHHHHHHHhcCCCHHHH
Confidence 9998743 35889999999875 456888899999887422 23467889999999999999
Q ss_pred HHHHHHHHHhcccCcHHHHHHHHHcCChHHHHHHhhhCCHHHHHHHHHHHHHhhcCChhhhhhhhhHHHHHHHHhhcCCC
Q 017249 254 QHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDTPQEKRLSSSVLEKIVYDIAARVDG 333 (375)
Q Consensus 254 ~~a~~~L~~l~~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~~~~~~~g~~~~l~~~l~~~~~g 333 (375)
..|+++|..+. ....++.|+.++.+++ ++..|+.+|..+... .+++.|...+....+
T Consensus 210 ~~A~~aL~~~~------------~~~~~~~L~~~l~d~~--vr~~a~~aL~~i~~~--------~~~~~L~~~l~~~~~- 266 (280)
T 1oyz_A 210 IEAIIGLSYRK------------DKRVLSVLCDELKKNT--VYDDIIEAAGELGDK--------TLLPVLDTMLYKFDD- 266 (280)
T ss_dssp HHHHHHHHHTT------------CGGGHHHHHHHHTSSS--CCHHHHHHHHHHCCG--------GGHHHHHHHHTTSSC-
T ss_pred HHHHHHHHHhC------------CHhhHHHHHHHhcCcc--HHHHHHHHHHhcCch--------hhhHHHHHHHhcCCC-
Confidence 99999999885 2346788888887644 899999999998652 477888877764333
Q ss_pred hHHHHHHHHHHH
Q 017249 334 ADKAAETAKRLL 345 (375)
Q Consensus 334 ~~~~~~~a~~~l 345 (375)
+.....+...|
T Consensus 267 -~~~~~~~~~~l 277 (280)
T 1oyz_A 267 -NEIITSAIDKL 277 (280)
T ss_dssp -CHHHHHHHHHH
T ss_pred -cHHHHHHHHHh
Confidence 34444444443
No 42
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=99.56 E-value=6.2e-14 Score=144.88 Aligned_cols=312 Identities=12% Similarity=0.106 Sum_probs=224.7
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCChhhHHH-HH---hcCChHHHHHhhCCCCHHHHHHHHHHHHHhhccCh
Q 017249 25 ALIEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSE-FA---AAGVVQPLVLMLVSPNLDAIESSLLALLNLAVRNE 100 (375)
Q Consensus 25 ~~l~~Lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~-~~---~~g~v~~Lv~~L~~~~~~~~~~a~~~L~~L~~~~~ 100 (375)
+.++.|+..+.++++..+..++.+|..++... +..... .. -...++.+++++++++++++..|+++|.++....+
T Consensus 128 ~ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~-~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~ 206 (852)
T 4fdd_A 128 DLLPKLCSLLDSEDYNTCEGAFGALQKICEDS-AEILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRT 206 (852)
T ss_dssp THHHHHHHHHSCSSHHHHHHHHHHHHHHHHHH-TTHHHHCSSSSCHHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTC
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHh-HHHhchhhhcchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccc
Confidence 57889999999999999999999999999776 222110 00 12357778888889999999999999998886432
Q ss_pred hhHHHHHH--cCChHHHHHhhcCCChHHHHHHHHHHHHhhccCCC--hhHHHhcCChHHHHHHhccCCHHHHHHHHHHHH
Q 017249 101 RNKVKIAT--AGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPN--KPAIAASGAAPLLVQILHSGSVQGRVDAVTALH 176 (375)
Q Consensus 101 ~~r~~i~~--~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~--~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~ 176 (375)
. .+.. ...++.|+.++.++++.++..++.+|..++..... ...+ .+.++.++..+.+.+..++..|+..+.
T Consensus 207 ~---~~~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~~l--~~l~~~l~~~~~~~~~~vr~~a~e~l~ 281 (852)
T 4fdd_A 207 Q---ALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHM--HNIVEYMLQRTQDQDENVALEACEFWL 281 (852)
T ss_dssp H---HHHTSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGGGH--HHHHHHHHHHHTCSSHHHHHHHHHHHH
T ss_pred H---HHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHHHHH--HHHHHHHHHHccCCcHHHHHHHHHHHH
Confidence 1 1111 24678888888889999999999999999875431 1111 257888888889989999999999999
Q ss_pred HhccCCCCchhhhh--cCCcHHHHHHhh----------hc---c-------cchHHHHHHHHHHHHhhCChhhhHHHhhc
Q 017249 177 YLSTCKENSSPILD--ATAVPPLINLLK----------DC---K-------KYSKFAEKATALLEILSSSEEGRIAITNS 234 (375)
Q Consensus 177 ~L~~~~~~~~~i~~--~g~i~~Lv~ll~----------~~---~-------~~~~~~~~a~~~L~~l~~~~~~~~~~~~~ 234 (375)
.++.....+..+.. ...++.++..+. .+ + ..-.++..+..+|..++.... ..++
T Consensus 282 ~l~~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~--~~~~-- 357 (852)
T 4fdd_A 282 TLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYR--DELL-- 357 (852)
T ss_dssp HHTTSTTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHG--GGGH--
T ss_pred HHhcchhHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhcc--HHHH--
Confidence 99865432221111 134566666552 11 0 011356778888888875432 2233
Q ss_pred cCcHHHHHHHhccCChHHHHHHHHHHHHhcccCcHHHHHHHHHcCChHHHHHHhhhCCHHHHHHHHHHHHHhhcCChh--
Q 017249 235 DGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDTPQE-- 312 (375)
Q Consensus 235 ~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~~-- 312 (375)
...++.+..++.+.+...|+.|+++|.+++.+... .... .-.++++.|+..+.+.++.+|..|+++|..++.....
T Consensus 358 ~~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~-~~~~-~l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~ 435 (852)
T 4fdd_A 358 PHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQ-GMIP-YLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQP 435 (852)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHH-HHGG-GHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHHHSC
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchH-HHHH-HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccch
Confidence 24677788888888999999999999999988732 1111 2256789999999999999999999999999875422
Q ss_pred -hhhhhhhHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHH
Q 017249 313 -KRLSSSVLEKIVYDIAARVDGADKAAETAKRLLQDMVQR 351 (375)
Q Consensus 313 -~~~~~g~~~~l~~~l~~~~~g~~~~~~~a~~~l~~l~~~ 351 (375)
...-.++++.|+..|. +..++.++.|..+|.++.+.
T Consensus 436 ~~~~~~~ll~~L~~~L~---d~~~~vr~~a~~aL~~l~~~ 472 (852)
T 4fdd_A 436 PDTYLKPLMTELLKRIL---DSNKRVQEAACSAFATLEEE 472 (852)
T ss_dssp TTTTHHHHHHHHHHHHT---CSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh---CCCHHHHHHHHHHHHHHHHH
Confidence 2344568888887774 55689999999999999754
No 43
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=99.52 E-value=1.7e-12 Score=127.98 Aligned_cols=307 Identities=13% Similarity=0.117 Sum_probs=224.0
Q ss_pred HhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhccChhhH
Q 017249 24 QALIEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIESSLLALLNLAVRNERNK 103 (375)
Q Consensus 24 ~~~l~~Lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~~~~~~~~~a~~~L~~L~~~~~~~r 103 (375)
...++.++.++++++++++..|+..+..++....+..+....-...++.+..+++++++.++..++++|..++.... .
T Consensus 280 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~--~ 357 (588)
T 1b3u_A 280 TDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILG--K 357 (588)
T ss_dssp HTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHC--H
T ss_pred hHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhChhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhh--H
Confidence 45678888888888999999999999999876522222212234567888899999999999999999999985311 1
Q ss_pred HHHHHcCChHHHHHhhcCCChHHHHHHHHHHHHhhccCCChhHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCCC
Q 017249 104 VKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTCKE 183 (375)
Q Consensus 104 ~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~~L~~~~~ 183 (375)
.......+|.+..++++.++++|..++.++..+...-.... .....++.|..++.+.+..++..++.+|..++..-.
T Consensus 358 -~~~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~--~~~~~lp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~ 434 (588)
T 1b3u_A 358 -DNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQ--LSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLG 434 (588)
T ss_dssp -HHHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCHHH--HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHC
T ss_pred -hHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhcCHHH--HHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHcC
Confidence 11234578899999998899999999999888865432111 224567888889998899999999999998874311
Q ss_pred CchhhhhcCCcHHHHHHhhhcccchHHHHHHHHHHHHhhCChhhhHHHhhccCcHHHHHHHhccCChHHHHHHHHHHHHh
Q 017249 184 NSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSL 263 (375)
Q Consensus 184 ~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l 263 (375)
. .......++.+...+.+. ...+++.+..++..++...... ... ...++.|..++.+.+..+|..++.++..+
T Consensus 435 ~--~~~~~~l~~~l~~~l~d~--~~~Vr~~a~~~l~~l~~~~~~~-~~~--~~llp~l~~~~~~~~~~~R~~a~~~l~~l 507 (588)
T 1b3u_A 435 V--EFFDEKLNSLCMAWLVDH--VYAIREAATSNLKKLVEKFGKE-WAH--ATIIPKVLAMSGDPNYLHRMTTLFCINVL 507 (588)
T ss_dssp G--GGCCHHHHHHHHHGGGCS--SHHHHHHHHHHHHHHHHHHCHH-HHH--HHTHHHHHHTTTCSCHHHHHHHHHHHHHH
T ss_pred H--HHHHHHHHHHHHHHhcCC--cHHHHHHHHHHHHHHHHHhCch-hHH--HHHHHHHHHHhhCCCHHHHHHHHHHHHHH
Confidence 1 111223567788887765 4578899999999887532221 112 35778888888888899999999999999
Q ss_pred cccCcHHHHHHHHHcCChHHHHHHhhhCCHHHHHHHHHHHHHhhcCChhhhhhhhhHHHHHHHHhhcCCChHHHHHHHHH
Q 017249 264 CQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDTPQEKRLSSSVLEKIVYDIAARVDGADKAAETAKR 343 (375)
Q Consensus 264 ~~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~~~~~~~g~~~~l~~~l~~~~~g~~~~~~~a~~ 343 (375)
+...+. ......+++.|+.++.+.++.+|..++++|..+...-........+++.|.. +. .|..++.+..|..
T Consensus 508 ~~~~~~----~~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~p~l~~-l~--~d~d~~vr~~a~~ 580 (588)
T 1b3u_A 508 SEVCGQ----DITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTLQSEVKPILEK-LT--QDQDVDVKYFAQE 580 (588)
T ss_dssp HHHHHH----HHHHHHTHHHHHHGGGCSCHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHH-HT--TCSSHHHHHHHHH
T ss_pred HHhcCH----HHHHHHHHHHHHhhCCCCCchHHHHHHHHHHHHHHHhchhhhHHHHHHHHHH-Hc--CCCchhHHHHHHH
Confidence 765321 2244578899999999999999999999999998755444444456665544 44 5667899999999
Q ss_pred HHHHHH
Q 017249 344 LLQDMV 349 (375)
Q Consensus 344 ~l~~l~ 349 (375)
++..+.
T Consensus 581 al~~l~ 586 (588)
T 1b3u_A 581 ALTVLS 586 (588)
T ss_dssp HHHHTT
T ss_pred HHHHhh
Confidence 987653
No 44
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=99.50 E-value=1.3e-12 Score=111.81 Aligned_cols=188 Identities=23% Similarity=0.188 Sum_probs=157.0
Q ss_pred cCChHHHHHhhCCCCHHHHHHHHHHHHHhhccChhhHHHHHHcCChHHHHHhhcCCChHHHHHHHHHHHHhhccCCChhH
Q 017249 67 AGVVQPLVLMLVSPNLDAIESSLLALLNLAVRNERNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPA 146 (375)
Q Consensus 67 ~g~v~~Lv~~L~~~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~ 146 (375)
.+.++.|++.|.++++.++..++..|..+.. ..+++.|+.+|.++++.++..++.+|..+.
T Consensus 18 ~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~-------- 78 (211)
T 3ltm_A 18 PEKVEMYIKNLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRRAAADALGQIG-------- 78 (211)
T ss_dssp GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHC--------
T ss_pred HhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC-----------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhC--------
Confidence 3579999999999999999999999998754 256899999999999999999999999874
Q ss_pred HHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCCCCchhhhhcCCcHHHHHHhhhcccchHHHHHHHHHHHHhhCChh
Q 017249 147 IAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEE 226 (375)
Q Consensus 147 i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~~~~ 226 (375)
....++.|+.+|.++++.++..++.+|..+.. .+.++.|+.++.++ +..++..+..+|..+.
T Consensus 79 --~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~--~~~vr~~a~~aL~~~~---- 140 (211)
T 3ltm_A 79 --DERAVEPLIKALKDEDGWVRQSAAVALGQIGD----------ERAVEPLIKALKDE--DWFVRIAAAFALGEIG---- 140 (211)
T ss_dssp --CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCS--SHHHHHHHHHHHHHHC----
T ss_pred --CHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCC--CHHHHHHHHHHHHHcC----
Confidence 24678999999999999999999999998843 35788999999765 5578888999998874
Q ss_pred hhHHHhhccCcHHHHHHHhccCChHHHHHHHHHHHHhcccCcHHHHHHHHHcCChHHHHHHhhhCCHHHHHHHHHHHHHh
Q 017249 227 GRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLL 306 (375)
Q Consensus 227 ~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~~~~~A~~~L~~l 306 (375)
....++.|..++.++++.++..|+.+|..+.. ..+++.|..++.++++.+|..|..+|..+
T Consensus 141 -------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~------------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~ 201 (211)
T 3ltm_A 141 -------DERAVEPLIKALKDEDGWVRQSAADALGEIGG------------ERVRAAMEKLAETGTGFARKVAVNYLETH 201 (211)
T ss_dssp -------CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS------------HHHHHHHHHHHHHCCHHHHHHHHHHHHC-
T ss_pred -------CHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc------------hhHHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence 34578899999999999999999999999842 23567788899999999999999999998
Q ss_pred hcCC
Q 017249 307 RDTP 310 (375)
Q Consensus 307 ~~~~ 310 (375)
....
T Consensus 202 ~~~~ 205 (211)
T 3ltm_A 202 KSFN 205 (211)
T ss_dssp ----
T ss_pred CCCC
Confidence 8765
No 45
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=99.49 E-value=4e-13 Score=138.81 Aligned_cols=313 Identities=12% Similarity=0.081 Sum_probs=212.5
Q ss_pred HhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhccChhhH
Q 017249 24 QALIEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIESSLLALLNLAVRNERNK 103 (375)
Q Consensus 24 ~~~l~~Lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~~~~~~~~~a~~~L~~L~~~~~~~r 103 (375)
...++.++..+++++++++..|+++|..+.... +..... .-...++.++..+.+++++++..++++|..++...+..-
T Consensus 173 ~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~-~~~~~~-~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~ 250 (852)
T 4fdd_A 173 NIMIPKFLQFFKHSSPKIRSHAVACVNQFIISR-TQALML-HIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRL 250 (852)
T ss_dssp HHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTT-CHHHHT-SHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcc-cHHHHH-HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHH
Confidence 346777888888899999999999999887655 221100 012467888899999999999999999999998655332
Q ss_pred HHHHHcCChHHHHHhhcCCChHHHHHHHHHHHHhhccCCChhHHH--hcCChHHHHHHh-----------cc--------
Q 017249 104 VKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIA--ASGAAPLLVQIL-----------HS-------- 162 (375)
Q Consensus 104 ~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~--~~~~l~~L~~lL-----------~~-------- 162 (375)
.... .+.++.++.++.+.++.++..|+..+..++.....+..+. -...++.++..+ .+
T Consensus 251 ~~~l-~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~d 329 (852)
T 4fdd_A 251 LPHM-HNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGD 329 (852)
T ss_dssp GGGH-HHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSTTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC---------
T ss_pred HHHH-HHHHHHHHHHccCCcHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccc
Confidence 1111 2467888888888899999999999999987643333221 123456666665 22
Q ss_pred ---CCHHHHHHHHHHHHHhccCCCCchhhhhcCCcHHHHHHhhhcccchHHHHHHHHHHHHhhCChhhhHHHhhccCcHH
Q 017249 163 ---GSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGIL 239 (375)
Q Consensus 163 ---~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~ 239 (375)
.+..++..++.+|..|+.... ..+. ..+++.+...+.+. +..+++.++.+|++++........-. -.+.++
T Consensus 330 d~~~~~~vr~~a~~~L~~la~~~~--~~~~-~~l~~~l~~~l~~~--~~~~R~aa~~alg~i~~~~~~~~~~~-l~~~l~ 403 (852)
T 4fdd_A 330 DTISDWNLRKCSAAALDVLANVYR--DELL-PHILPLLKELLFHH--EWVVKESGILVLGAIAEGCMQGMIPY-LPELIP 403 (852)
T ss_dssp ---CCCCHHHHHHHHHHHHHHHHG--GGGH-HHHHHHHHHHHTCS--SHHHHHHHHHHHHHTTTTTHHHHGGG-HHHHHH
T ss_pred cccccchHHHHHHHHHHHHHHhcc--HHHH-HHHHHHHHHHhcCC--CHHHHHHHHHHHHHHHhcchHHHHHH-HHHHHH
Confidence 122457888888888875422 1122 23566677777654 45788999999999997544322112 246888
Q ss_pred HHHHHhccCChHHHHHHHHHHHHhcccCcHHHHHHHHHcCChHHHHHHhhhCCHHHHHHHHHHHHHhhcCChhhh--hhh
Q 017249 240 TLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDTPQEKR--LSS 317 (375)
Q Consensus 240 ~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~~~~--~~~ 317 (375)
.++..+.++++.++..|+++|.+++....+. ...-.-.++++.|+..+.+.++.+|+.|+++|.++++.....+ .-.
T Consensus 404 ~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~-~~~~~~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~~~~~l~~~l~ 482 (852)
T 4fdd_A 404 HLIQCLSDKKALVRSITCWTLSRYAHWVVSQ-PPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELVPYLA 482 (852)
T ss_dssp HHHHHTTCSSHHHHHHHHHHHHHTHHHHHHS-CTTTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGGGGGHH
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHHHHHhccc-hHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhHhhHhHHH
Confidence 9999999999999999999999998643110 0001123577888888888899999999999999987554322 235
Q ss_pred hhHHHHHHHHhhcCCChHHHHHHHHHHHHHHH
Q 017249 318 SVLEKIVYDIAARVDGADKAAETAKRLLQDMV 349 (375)
Q Consensus 318 g~~~~l~~~l~~~~~g~~~~~~~a~~~l~~l~ 349 (375)
++++.|+..+.. ...+....+..++..+.
T Consensus 483 ~ll~~L~~~l~~---~~~~~~~~~~~ai~~l~ 511 (852)
T 4fdd_A 483 YILDTLVFAFSK---YQHKNLLILYDAIGTLA 511 (852)
T ss_dssp HHHHHHHHHHHH---CCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH---hChHHHHHHHHHHHHHH
Confidence 577777766642 22344444455555554
No 46
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=99.48 E-value=2.7e-12 Score=109.83 Aligned_cols=190 Identities=23% Similarity=0.208 Sum_probs=158.6
Q ss_pred hhHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhccChh
Q 017249 22 RKQALIEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIESSLLALLNLAVRNER 101 (375)
Q Consensus 22 ~~~~~l~~Lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~~~~~~~~~a~~~L~~L~~~~~~ 101 (375)
...+.++.|+..|+++++.++..|+..|..+... ..++.|+++|.++++.++..++++|+.+..
T Consensus 16 ~~~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~~------------~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~---- 79 (211)
T 3ltm_A 16 ADPEKVEMYIKNLQDDSYYVRRAAAYALGKIGDE------------RAVEPLIKALKDEDAWVRRAAADALGQIGD---- 79 (211)
T ss_dssp CCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCG------------GGHHHHHHHTTCSCHHHHHHHHHHHHHHCC----
T ss_pred cCHhHHHHHHHHHcCCCHHHHHHHHHHHHHhCCc------------cHHHHHHHHHcCCCHHHHHHHHHHHHhhCC----
Confidence 4567899999999999999999999999886432 458999999999999999999999998863
Q ss_pred hHHHHHHcCChHHHHHhhcCCChHHHHHHHHHHHHhhccCCChhHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccC
Q 017249 102 NKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTC 181 (375)
Q Consensus 102 ~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~~L~~~ 181 (375)
.+.++.|+.+|.++++.++..++.+|..+.. ...++.|+.++.++++.++..++.+|..+..
T Consensus 80 -------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~- 141 (211)
T 3ltm_A 80 -------ERAVEPLIKALKDEDGWVRQSAAVALGQIGD----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD- 141 (211)
T ss_dssp -------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-
T ss_pred -------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC-
Confidence 2468899999999999999999999998843 4578999999999999999999999998842
Q ss_pred CCCchhhhhcCCcHHHHHHhhhcccchHHHHHHHHHHHHhhCChhhhHHHhhccCcHHHHHHHhccCChHHHHHHHHHHH
Q 017249 182 KENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALL 261 (375)
Q Consensus 182 ~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~ 261 (375)
...++.|..++.++ +..++..+..+|..+. ....++.|..++.++++.++..|..+|.
T Consensus 142 ---------~~~~~~L~~~l~d~--~~~vr~~a~~aL~~~~-----------~~~~~~~L~~~l~d~~~~vr~~A~~aL~ 199 (211)
T 3ltm_A 142 ---------ERAVEPLIKALKDE--DGWVRQSAADALGEIG-----------GERVRAAMEKLAETGTGFARKVAVNYLE 199 (211)
T ss_dssp ---------GGGHHHHHHHTTCS--SHHHHHHHHHHHHHHC-----------SHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred ---------HHHHHHHHHHHcCC--CHHHHHHHHHHHHHhC-----------chhHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 34788899999765 4578888999999874 2457788999999999999999999999
Q ss_pred HhcccC
Q 017249 262 SLCQSC 267 (375)
Q Consensus 262 ~l~~~~ 267 (375)
++....
T Consensus 200 ~~~~~~ 205 (211)
T 3ltm_A 200 THKSFN 205 (211)
T ss_dssp C-----
T ss_pred hcCCCC
Confidence 987765
No 47
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=99.48 E-value=3e-12 Score=126.28 Aligned_cols=307 Identities=11% Similarity=0.095 Sum_probs=215.1
Q ss_pred HhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhccChhhH
Q 017249 24 QALIEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIESSLLALLNLAVRNERNK 103 (375)
Q Consensus 24 ~~~l~~Lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~~~~~~~~~a~~~L~~L~~~~~~~r 103 (375)
...++.+...++++++.++..|+..|..++... ... ......++.+..++++++..++..|+.+|..++...+.
T Consensus 163 ~~l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~-~~~---~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~-- 236 (588)
T 1b3u_A 163 AELRQYFRNLCSDDTPMVRRAAASKLGEFAKVL-ELD---NVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQ-- 236 (588)
T ss_dssp HHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTS-CHH---HHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCH--
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHh-cHH---hHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCH--
Confidence 355677777778889999999999999998765 211 12346788889999999999999999999998864332
Q ss_pred HHHHHcCChHHHHHhhcCCChHHHHHHHHHHHHhhccCCChhHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCCC
Q 017249 104 VKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTCKE 183 (375)
Q Consensus 104 ~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~~L~~~~~ 183 (375)
.......+|.+..++++.+..+|..++.+|..++..... .......++.+..+++++++.++..++.+|..++..-.
T Consensus 237 -~~~~~~~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~--~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~ 313 (588)
T 1b3u_A 237 -EDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGP--EITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLS 313 (588)
T ss_dssp -HHHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCH--HHHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSC
T ss_pred -HHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhCc--ccchhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhC
Confidence 122345788888888888999999999999998764221 11234678999999999999999999999999885422
Q ss_pred C--chhhhhcCCcHHHHHHhhhcccchHHHHHHHHHHHHhhCChhhhHHHhhccCcHHHHHHHhccCChHHHHHHHHHHH
Q 017249 184 N--SSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALL 261 (375)
Q Consensus 184 ~--~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~ 261 (375)
. .........++.+..++.+. +..++..++.+|..++..-... ... ...++.+..++.+.++.++..++.+|.
T Consensus 314 ~~~~~~~~~~~l~p~l~~~l~d~--~~~vR~~a~~~l~~l~~~~~~~-~~~--~~l~p~l~~~l~d~~~~Vr~~a~~~l~ 388 (588)
T 1b3u_A 314 ADCRENVIMSQILPCIKELVSDA--NQHVKSALASVIMGLSPILGKD-NTI--EHLLPLFLAQLKDECPEVRLNIISNLD 388 (588)
T ss_dssp TTTHHHHHHHTHHHHHHHHHTCS--CHHHHHHHHTTGGGGHHHHCHH-HHH--HHTHHHHHHHHTCSCHHHHHHHHTTCH
T ss_pred hhhhhhHHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHHHHhhHh-HHH--HHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 1 11122345677787887765 4477888888888776421111 111 346788888888888899999998888
Q ss_pred HhcccCcHHHHHHHHHcCChHHHHHHhhhCCHHHHHHHHHHHHHhhcCChhhhhhhhhHHHHHHHHhhcCCChHHHHHHH
Q 017249 262 SLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDTPQEKRLSSSVLEKIVYDIAARVDGADKAAETA 341 (375)
Q Consensus 262 ~l~~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~~~~~~~g~~~~l~~~l~~~~~g~~~~~~~a 341 (375)
.++.....+ .....++|.|..++.+.+.++|..++.+|..+...-....+...+++.++..|. +.....++.|
T Consensus 389 ~l~~~~~~~----~~~~~~lp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~---d~~~~Vr~~a 461 (588)
T 1b3u_A 389 CVNEVIGIR----QLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLV---DHVYAIREAA 461 (588)
T ss_dssp HHHHHSCHH----HHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHHGGG---CSSHHHHHHH
T ss_pred HHHHhcCHH----HHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHhc---CCcHHHHHHH
Confidence 877654221 122456677777777778888888888888776543323334456666665553 5556777777
Q ss_pred HHHHHHHHHH
Q 017249 342 KRLLQDMVQR 351 (375)
Q Consensus 342 ~~~l~~l~~~ 351 (375)
..++..+...
T Consensus 462 ~~~l~~l~~~ 471 (588)
T 1b3u_A 462 TSNLKKLVEK 471 (588)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7777777543
No 48
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.48 E-value=3.3e-12 Score=114.29 Aligned_cols=229 Identities=13% Similarity=0.011 Sum_probs=173.0
Q ss_pred HhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhccChhhHHHHHHcCChHHHHHhhcCCChHHHHHHHHHHHHhhccCCCh
Q 017249 65 AAAGVVQPLVLMLVSPNLDAIESSLLALLNLAVRNERNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNK 144 (375)
Q Consensus 65 ~~~g~v~~Lv~~L~~~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~ 144 (375)
.+.+.++.|++.|.++++.++..|+++|+++.. .+.++.|+.++.++++.++..|+++|..+.......
T Consensus 20 ~~~~~i~~L~~~L~~~~~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~~~~ 88 (280)
T 1oyz_A 20 CKKLNDDELFRLLDDHNSLKRISSARVLQLRGG-----------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCE 88 (280)
T ss_dssp HHTSCHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTTH
T ss_pred HHHhhHHHHHHHHHcCCHHHHHHHHHHHHccCC-----------chHHHHHHHHHcCCCHHHHHHHHHHHHHhccccccc
Confidence 345789999999999999999999999999863 235789999999999999999999999886433221
Q ss_pred hHHHhcCChHHHHH-HhccCCHHHHHHHHHHHHHhccCCCCchhhhhcCCcHHHHHHhhhcccchHHHHHHHHHHHHhhC
Q 017249 145 PAIAASGAAPLLVQ-ILHSGSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSS 223 (375)
Q Consensus 145 ~~i~~~~~l~~L~~-lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~ 223 (375)
. ..++.|.+ ++.++++.++..++++|.++...... .....++.|+..+.++ +..++..++.+|.++.
T Consensus 89 ~-----~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~~----~~~~~~~~L~~~l~d~--~~~vR~~a~~aL~~~~- 156 (280)
T 1oyz_A 89 D-----NVFNILNNMALNDKSACVRATAIESTAQRCKKNPI----YSPKIVEQSQITAFDK--STNVRRATAFAISVIN- 156 (280)
T ss_dssp H-----HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGG----GHHHHHHHHHHHTTCS--CHHHHHHHHHHHHTC--
T ss_pred h-----HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCc----ccHHHHHHHHHHhhCC--CHHHHHHHHHHHHhcC-
Confidence 1 12344442 45778899999999999998743211 1224678888888765 4578888888888664
Q ss_pred ChhhhHHHhhccCcHHHHHHHhccCChHHHHHHHHHHHHhcccCcHHHHHHHHHcCChHHHHHHhhhCCHHHHHHHHHHH
Q 017249 224 SEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLL 303 (375)
Q Consensus 224 ~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~~~~~A~~~L 303 (375)
....++.|+.++.++++.++..|+++|..+.... + .+++.|+.++.+.++.+|..|+++|
T Consensus 157 ----------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~-~---------~~~~~L~~~l~d~~~~vR~~A~~aL 216 (280)
T 1oyz_A 157 ----------DKATIPLLINLLKDPNGDVRNWAAFAININKYDN-S---------DIRDCFVEMLQDKNEEVRIEAIIGL 216 (280)
T ss_dssp ------------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCC-H---------HHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred ----------CHHHHHHHHHHHcCCCHHHHHHHHHHHHhhccCc-H---------HHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 2468999999999999999999999999985433 2 3467888899999999999999999
Q ss_pred HHhhcCChhhhhhhhhHHHHHHHHhhcCCChHHHHHHHHHHHHHHH
Q 017249 304 DLLRDTPQEKRLSSSVLEKIVYDIAARVDGADKAAETAKRLLQDMV 349 (375)
Q Consensus 304 ~~l~~~~~~~~~~~g~~~~l~~~l~~~~~g~~~~~~~a~~~l~~l~ 349 (375)
..+.. ..+++.|+..+. ++ ..+..|..+|..+-
T Consensus 217 ~~~~~--------~~~~~~L~~~l~---d~--~vr~~a~~aL~~i~ 249 (280)
T 1oyz_A 217 SYRKD--------KRVLSVLCDELK---KN--TVYDDIIEAAGELG 249 (280)
T ss_dssp HHTTC--------GGGHHHHHHHHT---SS--SCCHHHHHHHHHHC
T ss_pred HHhCC--------HhhHHHHHHHhc---Cc--cHHHHHHHHHHhcC
Confidence 99873 247777877774 22 25566666666664
No 49
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=99.47 E-value=5.8e-12 Score=106.86 Aligned_cols=187 Identities=23% Similarity=0.219 Sum_probs=158.8
Q ss_pred hhHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhccChh
Q 017249 22 RKQALIEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIESSLLALLNLAVRNER 101 (375)
Q Consensus 22 ~~~~~l~~Lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~~~~~~~~~a~~~L~~L~~~~~~ 101 (375)
...+..+.+++.|+++++.++..|+..|..+... +.++.|+++|.++++.++..++++|..+..
T Consensus 11 ~~~~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~~------------~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~---- 74 (201)
T 3ltj_A 11 TDPEKVEMYIKNLQDDSYYVRRAAAYALGKIGDE------------RAVEPLIKALKDEDAWVRRAAADALGQIGD---- 74 (201)
T ss_dssp CCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHCCG------------GGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----
T ss_pred cCCcchHHHHHHhcCCCHHHHHHHHHHHHhcCCh------------hHHHHHHHHHcCCCHHHHHHHHHHHHhhCC----
Confidence 3457789999999999999999999999876532 358999999999999999999999998753
Q ss_pred hHHHHHHcCChHHHHHhhcCCChHHHHHHHHHHHHhhccCCChhHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccC
Q 017249 102 NKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTC 181 (375)
Q Consensus 102 ~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~~L~~~ 181 (375)
...++.|+.+|.++++.++..|+++|..+.. ...++.|+.++.++++.++..|+++|..+..
T Consensus 75 -------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~- 136 (201)
T 3ltj_A 75 -------ERAVEPLIKALKDEDGWVRQSAAVALGQIGD----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD- 136 (201)
T ss_dssp -------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTC-
T ss_pred -------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC-
Confidence 2468899999999999999999999998743 4578999999999999999999999998842
Q ss_pred CCCchhhhhcCCcHHHHHHhhhcccchHHHHHHHHHHHHhhCChhhhHHHhhccCcHHHHHHHhccCChHHHHHHHHHHH
Q 017249 182 KENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALL 261 (375)
Q Consensus 182 ~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~ 261 (375)
.+.++.|..++.+. +..++..+..+|..+. ....++.|..++.++++.++..|..+|.
T Consensus 137 ---------~~~~~~L~~~l~d~--~~~vr~~A~~aL~~~~-----------~~~~~~~L~~~l~d~~~~vr~~A~~aL~ 194 (201)
T 3ltj_A 137 ---------ERAVEPLIKALKDE--DGWVRQSAADALGEIG-----------GERVRAAMEKLAETGTGFARKVAVNYLE 194 (201)
T ss_dssp ---------GGGHHHHHHHTTCS--SHHHHHHHHHHHHHHC-----------SHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred ---------HHHHHHHHHHHcCC--CHHHHHHHHHHHHHhC-----------chhHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 35788899999865 4578888999999873 3457788889999999999999999998
Q ss_pred Hhc
Q 017249 262 SLC 264 (375)
Q Consensus 262 ~l~ 264 (375)
.+-
T Consensus 195 ~l~ 197 (201)
T 3ltj_A 195 THK 197 (201)
T ss_dssp HCC
T ss_pred HHH
Confidence 874
No 50
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=99.46 E-value=2.8e-12 Score=108.83 Aligned_cols=185 Identities=23% Similarity=0.194 Sum_probs=156.5
Q ss_pred CChHHHHHhhCCCCHHHHHHHHHHHHHhhccChhhHHHHHHcCChHHHHHhhcCCChHHHHHHHHHHHHhhccCCChhHH
Q 017249 68 GVVQPLVLMLVSPNLDAIESSLLALLNLAVRNERNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAI 147 (375)
Q Consensus 68 g~v~~Lv~~L~~~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i 147 (375)
+..+.++++|+++++.++..|+++|..+.. ...++.|+++|.++++.++..++.+|..+..
T Consensus 14 ~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~-------- 74 (201)
T 3ltj_A 14 EKVEMYIKNLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD-------- 74 (201)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC--------
T ss_pred cchHHHHHHhcCCCHHHHHHHHHHHHhcCC-----------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhCC--------
Confidence 457899999999999999999999998764 2468999999999999999999999988732
Q ss_pred HhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCCCCchhhhhcCCcHHHHHHhhhcccchHHHHHHHHHHHHhhCChhh
Q 017249 148 AASGAAPLLVQILHSGSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEG 227 (375)
Q Consensus 148 ~~~~~l~~L~~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~~~~~ 227 (375)
...++.|+.+|.++++.++..|+++|..+.. ...++.|+.++.+. +..++..+..+|..+.
T Consensus 75 --~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~--~~~vr~~a~~aL~~~~----- 135 (201)
T 3ltj_A 75 --ERAVEPLIKALKDEDGWVRQSAAVALGQIGD----------ERAVEPLIKALKDE--DWFVRIAAAFALGEIG----- 135 (201)
T ss_dssp --GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCS--SHHHHHHHHHHHHHHT-----
T ss_pred --HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHcCC--CHHHHHHHHHHHHHhC-----
Confidence 4678999999999999999999999998743 34788899998765 5578888999998874
Q ss_pred hHHHhhccCcHHHHHHHhccCChHHHHHHHHHHHHhcccCcHHHHHHHHHcCChHHHHHHhhhCCHHHHHHHHHHHHHhh
Q 017249 228 RIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLR 307 (375)
Q Consensus 228 ~~~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~~~~~A~~~L~~l~ 307 (375)
....++.|..++.++++.++..|+.+|..+.. + ..++.|..++.+.++.+|..|..+|..+.
T Consensus 136 ------~~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~---~---------~~~~~L~~~l~d~~~~vr~~A~~aL~~l~ 197 (201)
T 3ltj_A 136 ------DERAVEPLIKALKDEDGWVRQSAADALGEIGG---E---------RVRAAMEKLAETGTGFARKVAVNYLETHK 197 (201)
T ss_dssp ------CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS---H---------HHHHHHHHHHHHCCHHHHHHHHHHHHHCC
T ss_pred ------CHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc---h---------hHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 34688999999999999999999999999832 2 25678888889999999999999998875
Q ss_pred c
Q 017249 308 D 308 (375)
Q Consensus 308 ~ 308 (375)
.
T Consensus 198 ~ 198 (201)
T 3ltj_A 198 S 198 (201)
T ss_dssp -
T ss_pred h
Confidence 3
No 51
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=99.41 E-value=3.7e-12 Score=121.77 Aligned_cols=297 Identities=12% Similarity=0.077 Sum_probs=200.5
Q ss_pred HhHHHHHHHHhcCC--CHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCCC--CHHHHHHHHHHHHHhhccC
Q 017249 24 QALIEELSDKLING--DLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSP--NLDAIESSLLALLNLAVRN 99 (375)
Q Consensus 24 ~~~l~~Lv~~L~s~--~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~~--~~~~~~~a~~~L~~L~~~~ 99 (375)
.+.++.|+..+.++ ++..+..|+.+|..++....+....... ..+++.++..+.++ ++.++..|++++.++....
T Consensus 127 ~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~-~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~ 205 (462)
T 1ibr_B 127 PELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKS-NEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFT 205 (462)
T ss_dssp TTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGH-HHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHhHH-HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 45789999999888 9999999999999999754111111011 13678888999887 7999999999999865321
Q ss_pred hhhH-HHHHHcCChHHHHHhhcCCChHHHHHHHHHHHHhhccCCC--hhHHHhcCChHHHHHHhccCCHHHHHHHHHHHH
Q 017249 100 ERNK-VKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPN--KPAIAASGAAPLLVQILHSGSVQGRVDAVTALH 176 (375)
Q Consensus 100 ~~~r-~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~--~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~ 176 (375)
...- ......-.++.+...+.+.++.++..++.+|..++..... ...+ ....++.++..+++.+..++..++..+.
T Consensus 206 ~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~v~~~a~~~l~ 284 (462)
T 1ibr_B 206 KANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYM-GPALFAITIEAMKSDIDEVALQGIEFWS 284 (462)
T ss_dssp HHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTT-TTTHHHHHHHHHHCSSHHHHHHHHHHHH
T ss_pred HHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 1110 0111111356666777788999999999999999865431 1111 1167788888888889999999999888
Q ss_pred HhccCC------------------CCchhhhh---cCCcHHHHHHhhhcc-----cchHHHHHHHHHHHHhhCChhhhHH
Q 017249 177 YLSTCK------------------ENSSPILD---ATAVPPLINLLKDCK-----KYSKFAEKATALLEILSSSEEGRIA 230 (375)
Q Consensus 177 ~L~~~~------------------~~~~~i~~---~g~i~~Lv~ll~~~~-----~~~~~~~~a~~~L~~l~~~~~~~~~ 230 (375)
.++... .....+.. ...+|.++..+...+ .+..++..+..+|..++..-. ..
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~--~~ 362 (462)
T 1ibr_B 285 NVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCE--DD 362 (462)
T ss_dssp HHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTT--TT
T ss_pred HHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhcc--HH
Confidence 887431 01111111 235666666665421 122467788888888875322 13
Q ss_pred HhhccCcHHHHHHHhccCChHHHHHHHHHHHHhcccCcHHHHHHHHHcCChHHHHHHhhhCCHHHHHHHHHHHHHhhcCC
Q 017249 231 ITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDTP 310 (375)
Q Consensus 231 ~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~~~~~A~~~L~~l~~~~ 310 (375)
++ ...++.+...+.+.+...|..|+.+|..++.+..++..... -..+++.|+..+.+.++.+|..|+++|..++...
T Consensus 363 ~~--~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~-l~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~ 439 (462)
T 1ibr_B 363 IV--PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPL-VIQAMPTLIELMKDPSVVVRDTAAWTVGRICELL 439 (462)
T ss_dssp HH--HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTT-TTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHG
T ss_pred HH--HHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcHHHHHHH-HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhc
Confidence 33 25677788888888999999999999999986532111111 1568899999999999999999999999998765
Q ss_pred hhhhhhhhhHHHHHHHH
Q 017249 311 QEKRLSSSVLEKIVYDI 327 (375)
Q Consensus 311 ~~~~~~~g~~~~l~~~l 327 (375)
...+.....+++++..|
T Consensus 440 ~~~~~~~~~l~~ll~~L 456 (462)
T 1ibr_B 440 PEAAINDVYLAPLLQCL 456 (462)
T ss_dssp GGGCCSTTTHHHHHHHH
T ss_pred ccccccHHHHHHHHHHH
Confidence 44332334555555544
No 52
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=99.35 E-value=1.1e-10 Score=120.65 Aligned_cols=317 Identities=12% Similarity=0.073 Sum_probs=218.8
Q ss_pred HhHHHHHHHHhcCC--CHHHHHHHHHHHHHHHhhCChhhHHHHHh--cCChHHHHHhhCCC--CHHHHHHHHHHHHHhhc
Q 017249 24 QALIEELSDKLING--DLETKIEAARDIRKVVKKSSLKTRSEFAA--AGVVQPLVLMLVSP--NLDAIESSLLALLNLAV 97 (375)
Q Consensus 24 ~~~l~~Lv~~L~s~--~~~~~~~a~~~l~~l~~~~~~~~~~~~~~--~g~v~~Lv~~L~~~--~~~~~~~a~~~L~~L~~ 97 (375)
.+.++.|+..+.++ ++..+..++.++..++....++ .+.. ...++.+...+.++ +.+++..++++|..++.
T Consensus 127 ~~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~---~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~ 203 (876)
T 1qgr_A 127 PELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPE---QLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLE 203 (876)
T ss_dssp TTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCHH---HHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCHh---hHHhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHH
Confidence 35688899999888 8999999999999998764111 1211 24567788888876 68999999999999875
Q ss_pred cChhhH-HHHHHcCChHHHHHhhcCCChHHHHHHHHHHHHhhccCCCh-hHHHhcCChHHHHHHhccCCHHHHHHHHHHH
Q 017249 98 RNERNK-VKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNK-PAIAASGAAPLLVQILHSGSVQGRVDAVTAL 175 (375)
Q Consensus 98 ~~~~~r-~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~-~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L 175 (375)
.-...- ........++.+...+.+.+++++..++.+|..+....... ........++.++..+.+.+..++..++..+
T Consensus 204 ~~~~~~~~~~~~~~il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~al~~l 283 (876)
T 1qgr_A 204 FTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFW 283 (876)
T ss_dssp GCHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHH
Confidence 322110 01111125667777787888999999999999988654321 1122236788888888888889999999888
Q ss_pred HHhccCCC------------------Cchhhh---hcCCcHHHHHHhhhcc-----cchHHHHHHHHHHHHhhCChhhhH
Q 017249 176 HYLSTCKE------------------NSSPIL---DATAVPPLINLLKDCK-----KYSKFAEKATALLEILSSSEEGRI 229 (375)
Q Consensus 176 ~~L~~~~~------------------~~~~i~---~~g~i~~Lv~ll~~~~-----~~~~~~~~a~~~L~~l~~~~~~~~ 229 (375)
..++.... ...... -...++.++..+.... .+..++..+..+|..++..-. .
T Consensus 284 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~--~ 361 (876)
T 1qgr_A 284 SNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCE--D 361 (876)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHG--G
T ss_pred HHHHHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHCc--H
Confidence 88874310 000111 0235666777775321 122467778888888775322 1
Q ss_pred HHhhccCcHHHHHHHhccCChHHHHHHHHHHHHhcccCcHHHHHHHHHcCChHHHHHHhhhCCHHHHHHHHHHHHHhhcC
Q 017249 230 AITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDT 309 (375)
Q Consensus 230 ~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~~~~~A~~~L~~l~~~ 309 (375)
.++ ...++.+...+.+.+..+|..|+++|..++.+..++..... -..+++.|+..+.+.++.+|..|+++|..++..
T Consensus 362 ~~~--~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~-~~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~ 438 (876)
T 1qgr_A 362 DIV--PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPL-VIQAMPTLIELMKDPSVVVRDTAAWTVGRICEL 438 (876)
T ss_dssp GGH--HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHH-HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH
T ss_pred hhH--HHHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHH-HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHh
Confidence 233 24667777788888899999999999999987643322222 245889999999999999999999999999876
Q ss_pred Chhh----hhhhhhHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHH
Q 017249 310 PQEK----RLSSSVLEKIVYDIAARVDGADKAAETAKRLLQDMVQRS 352 (375)
Q Consensus 310 ~~~~----~~~~g~~~~l~~~l~~~~~g~~~~~~~a~~~l~~l~~~s 352 (375)
.+.. -.-..+++.++..|. +. ++.+..|..+|..+....
T Consensus 439 ~~~~~~~~~~l~~~l~~l~~~l~---~~-~~v~~~a~~al~~l~~~~ 481 (876)
T 1qgr_A 439 LPEAAINDVYLAPLLQCLIEGLS---AE-PRVASNVCWAFSSLAEAA 481 (876)
T ss_dssp CGGGTSSTTTHHHHHHHHHHHTT---SC-HHHHHHHHHHHHHHHHHH
T ss_pred CchhcccHHHHHHHHHHHHHHHc---CC-HHHHHHHHHHHHHHHHHh
Confidence 5331 223457777777664 33 888999999999998654
No 53
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=99.35 E-value=9.3e-11 Score=116.07 Aligned_cols=221 Identities=15% Similarity=0.114 Sum_probs=142.9
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhccChhh---
Q 017249 26 LIEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIESSLLALLNLAVRNERN--- 102 (375)
Q Consensus 26 ~l~~Lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~~~~~~~~~a~~~L~~L~~~~~~~--- 102 (375)
.++.+...|.++++.++..|+.++.++.... ++. +.+.++++.|.++|.++++.++..|+.+|..++.++++.
T Consensus 122 l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~-p~~---~~~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~~ 197 (591)
T 2vgl_B 122 LCEPLRKCLKDEDPYVRKTAAVCVAKLHDIN-AQM---VEDQGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSNLL 197 (591)
T ss_dssp HHHHHHHHSSCSCHHHHHHHHHHHHHHHHSS-CCC---HHHHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCCSC
T ss_pred HHHHHHHHcCCCChHHHHHHHHHHHHHHhhC-hhh---cccccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCccch
Confidence 4566888888999999999999999999876 432 223467899999999999999999999999999865422
Q ss_pred ------HHHHHH----------------------------cCChHHHHHhhcCCChHHHHHHHHHHHHhhcc----CCCh
Q 017249 103 ------KVKIAT----------------------------AGAIPPLVELLKFQNGTLRELAAAAILTLSAA----APNK 144 (375)
Q Consensus 103 ------r~~i~~----------------------------~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~----~~~~ 144 (375)
-..+.. ...++.+..++++.++.++..|++++..+... ++..
T Consensus 198 ~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~~~~~~~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~~~~~~~~~~ 277 (591)
T 2vgl_B 198 DLNPQNINKLLTALNECTEWGQIFILDCLSNYNPKDDREAQSICERVTPRLSHANSAVVLSAVKVLMKFLELLPKDSDYY 277 (591)
T ss_dssp CCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCCSHHHHHHHHHHHTTCSCSSTTHHHHHHHHHHHHSCCSCCBTTBSH
T ss_pred hccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCCCHHHH
Confidence 111111 13456666777888899999999999998742 2222
Q ss_pred hHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccC-CCCchhhhhcCCcHHHHHHhhhcccchHHHHHHHHHHHHhhC
Q 017249 145 PAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTC-KENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSS 223 (375)
Q Consensus 145 ~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~~L~~~-~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~ 223 (375)
..+ .....+.|+.++. +++.++..++.+|..+... ++.... .+..+ +...+++..++..++.+|.+++.
T Consensus 278 ~~~-~~~~~~~L~~L~~-~d~~vr~~aL~~l~~i~~~~p~~~~~-----~~~~~---~~~~~d~~~Ir~~al~~L~~l~~ 347 (591)
T 2vgl_B 278 NML-LKKLAPPLVTLLS-GEPEVQYVALRNINLIVQKRPEILKQ-----EIKVF---FVKYNDPIYVKLEKLDIMIRLAS 347 (591)
T ss_dssp HHH-HHHTHHHHHHHTT-SCHHHHHHHHHHHHHHHHHCCSTTTT-----CTTTT---SCCTTSCHHHHHHHHHHHHHTCC
T ss_pred HHH-HHHHHHHHHHHhc-CCccHHHHHHHHHHHHHHhChHHHHH-----HHHhh---eeccCChHHHHHHHHHHHHHHCC
Confidence 222 2455677776664 7889999999999988753 221111 11111 11111124555666666666553
Q ss_pred ChhhhHHHhhccCcHHHHHHHhccCChHHHHHHHHHHHHhcccC
Q 017249 224 SEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSC 267 (375)
Q Consensus 224 ~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~ 267 (375)
.. +.. ..++.|..++.+.+..++..+++.|..++...
T Consensus 348 ~~-nv~------~iv~~L~~~l~~~d~~~r~~~v~aI~~la~~~ 384 (591)
T 2vgl_B 348 QA-NIA------QVLAELKEYATEVDVDFVRKAVRAIGRCAIKV 384 (591)
T ss_dssp SS-THH------HHHHHHHHHTTSSCHHHHHHHHHHHHHHHTTC
T ss_pred hh-hHH------HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhC
Confidence 22 211 23444555555556666666666666665543
No 54
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=99.35 E-value=5.7e-11 Score=117.60 Aligned_cols=265 Identities=13% Similarity=0.100 Sum_probs=178.9
Q ss_pred hHHHHHhhCCCCHHHHHHHHHHHHHhhccChhhHHHHHHcCChHHHHHhhcCCChHHHHHHHHHHHHhhccCCCh-hHHH
Q 017249 70 VQPLVLMLVSPNLDAIESSLLALLNLAVRNERNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNK-PAIA 148 (375)
Q Consensus 70 v~~Lv~~L~~~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~-~~i~ 148 (375)
++.+.++|.++++.++..|+.++.++...+++.. ...+.++.|..+|.++++.++..|+.+|..++...+.. ..-.
T Consensus 123 ~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~~---~~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~~~l 199 (591)
T 2vgl_B 123 CEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQMV---EDQGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSNLLDL 199 (591)
T ss_dssp HHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCCH---HHHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCCSCCC
T ss_pred HHHHHHHcCCCChHHHHHHHHHHHHHHhhChhhc---ccccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCccchhc
Confidence 5668889999999999999999999987655432 23567899999999999999999999999998875422 1111
Q ss_pred hcCChHHHHHHhccCCHHHHHHHHHHHHHhccCCCCchhhhhcCCcHHHHHHhhhcccchHHHHHHHHHHHHhhC----C
Q 017249 149 ASGAAPLLVQILHSGSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSS----S 224 (375)
Q Consensus 149 ~~~~l~~L~~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~----~ 224 (375)
..+.+..|+..+.+.++-.+...+.+|..++..++. . ....++.+..++.+. +..+...|++++..+.. +
T Consensus 200 ~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~~~~--~--~~~~l~~l~~~l~~~--~~~V~~ea~~~i~~l~~~~~~~ 273 (591)
T 2vgl_B 200 NPQNINKLLTALNECTEWGQIFILDCLSNYNPKDDR--E--AQSICERVTPRLSHA--NSAVVLSAVKVLMKFLELLPKD 273 (591)
T ss_dssp HHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCCSHH--H--HHHHHHHHTTCSCSS--TTHHHHHHHHHHHHSCCSCCBT
T ss_pred cHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCCChH--H--HHHHHHHHHHHHcCC--ChHHHHHHHHHHHHHhhccCCC
Confidence 234567788888888888888888888877643221 1 123556666667654 34677888899888864 2
Q ss_pred hhhhHHHhhccCcHHHHHHHhccCChHHHHHHHHHHHHhcccCc-----------------HHHH----HHHH---Hc--
Q 017249 225 EEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCR-----------------DKYR----QLIL---KE-- 278 (375)
Q Consensus 225 ~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~-----------------~~~~----~~l~---~~-- 278 (375)
++....+. ....+.|+.++. +++.+|..|+..|..++...+ ...+ +.+. ..
T Consensus 274 ~~~~~~~~--~~~~~~L~~L~~-~d~~vr~~aL~~l~~i~~~~p~~~~~~~~~~~~~~~d~~~Ir~~al~~L~~l~~~~n 350 (591)
T 2vgl_B 274 SDYYNMLL--KKLAPPLVTLLS-GEPEVQYVALRNINLIVQKRPEILKQEIKVFFVKYNDPIYVKLEKLDIMIRLASQAN 350 (591)
T ss_dssp TBSHHHHH--HHTHHHHHHHTT-SCHHHHHHHHHHHHHHHHHCCSTTTTCTTTTSCCTTSCHHHHHHHHHHHHHTCCSST
T ss_pred HHHHHHHH--HHHHHHHHHHhc-CCccHHHHHHHHHHHHHHhChHHHHHHHHhheeccCChHHHHHHHHHHHHHHCChhh
Confidence 33333333 245666665554 667788888888877754211 1111 1111 11
Q ss_pred --CChHHHHHHhhhCCHHHHHHHHHHHHHhhcCChhhhhhhhhHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHH
Q 017249 279 --GAIPGLLRLTVEGTFEAQERARTLLDLLRDTPQEKRLSSSVLEKIVYDIAARVDGADKAAETAKRLLQDMVQR 351 (375)
Q Consensus 279 --g~v~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~~~~~~~g~~~~l~~~l~~~~~g~~~~~~~a~~~l~~l~~~ 351 (375)
.+++.|..++.+.++..+..+++.+..|+...+. .....++.|+..+. ..| ......+...++.+++.
T Consensus 351 v~~iv~~L~~~l~~~d~~~r~~~v~aI~~la~~~~~--~~~~~v~~Ll~ll~--~~~-~~v~~e~i~~l~~ii~~ 420 (591)
T 2vgl_B 351 IAQVLAELKEYATEVDVDFVRKAVRAIGRCAIKVEQ--SAERCVSTLLDLIQ--TKV-NYVVQEAIVVIRDIFRK 420 (591)
T ss_dssp HHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHTTCHH--HHHHHHHHHHHHHH--TCC-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhChh--HHHHHHHHHHHHHc--ccc-hHHHHHHHHHHHHHHHH
Confidence 1455666677788999999999999999987642 23557788887775 334 55555666677777654
No 55
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=99.25 E-value=8.7e-10 Score=113.64 Aligned_cols=318 Identities=10% Similarity=0.109 Sum_probs=208.9
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhccChhhH-H
Q 017249 26 LIEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIESSLLALLNLAVRNERNK-V 104 (375)
Q Consensus 26 ~l~~Lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~~~~~~~~~a~~~L~~L~~~~~~~r-~ 104 (375)
.++.+...+.+.++..+..|+.++..++....+....... ..+++.|+..+.++++.++..++++|+.++......- .
T Consensus 370 l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l-~~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~ 448 (861)
T 2bpt_A 370 VLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYV-HQALPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDP 448 (861)
T ss_dssp HHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH-HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCT
T ss_pred HHHHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHH-HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhhhhcCC
Confidence 4455556667889999999999999999765112221122 2468889999999999999999999999986321100 0
Q ss_pred HHHHcCChHHHHHhhcCCChHHHHHHHHHHHHhhccCCC--hhHH--HhcCChHHHHHHhccCC--HHHHHHHHHHHHHh
Q 017249 105 KIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPN--KPAI--AASGAAPLLVQILHSGS--VQGRVDAVTALHYL 178 (375)
Q Consensus 105 ~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~--~~~i--~~~~~l~~L~~lL~~~~--~~~~~~a~~~L~~L 178 (375)
.-.-...++.|+..+.+. +.++..++++|.+++..... ...+ .-...++.|++++.+.+ ..++..++.++..+
T Consensus 449 ~~~~~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~~~~il~~L~~~l~~~d~~~~vr~~a~~al~~l 527 (861)
T 2bpt_A 449 QQHLPGVVQACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTTM 527 (861)
T ss_dssp TTTHHHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHhCcCcchHHHHHHHHHHHHH
Confidence 001123467888888775 89999999999998765220 1111 11345778888887544 67899999999998
Q ss_pred ccCCC-CchhhhhcCCcHHHHHHhhhc-------------ccchHHHHHHHHHHHHhhCC-hhhhHHHhhccCcHHHHHH
Q 017249 179 STCKE-NSSPILDATAVPPLINLLKDC-------------KKYSKFAEKATALLEILSSS-EEGRIAITNSDGGILTLVE 243 (375)
Q Consensus 179 ~~~~~-~~~~i~~~g~i~~Lv~ll~~~-------------~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~~g~v~~Lv~ 243 (375)
..... ...... ...++.++..+... .....++..++.+|.+++.. +....... ...++.++.
T Consensus 528 ~~~~~~~~~~~~-~~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~--~~l~~~l~~ 604 (861)
T 2bpt_A 528 VEYATDTVAETS-ASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVA--DMLMGLFFR 604 (861)
T ss_dssp HHHCCGGGHHHH-HHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGGGH--HHHHHHHHH
T ss_pred HHHcchhhHHHH-HHHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH--HHHHHHHHH
Confidence 85432 222222 23566677666532 11234566788888887753 22222222 246777888
Q ss_pred HhccCCh-HHHHHHHHHHHHhcccCcHHHHHHHHHcCChHHHHHHhhhCCHHHHHHHHHHHHHhhcCChhhh--hhhhhH
Q 017249 244 TVEDGSL-VSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDTPQEKR--LSSSVL 320 (375)
Q Consensus 244 lL~~~~~-~~~~~a~~~L~~l~~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~~~~--~~~g~~ 320 (375)
.+.+.+. .+++.++.++..++..........+ ..+++.|...+.+.++.++..|..++..+........ .-..++
T Consensus 605 ~l~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~l--~~i~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~l~ 682 (861)
T 2bpt_A 605 LLEKKDSAFIEDDVFYAISALAASLGKGFEKYL--ETFSPYLLKALNQVDSPVSITAVGFIADISNSLEEDFRRYSDAMM 682 (861)
T ss_dssp HHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHH--HHHHHHHHHHHHCTTSHHHHHHHHHHHHHHHHTGGGGHHHHHHHH
T ss_pred HHccCCCCcHHHHHHHHHHHHHHHHhhhHHHHH--HHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhchhccchHHHHH
Confidence 8887766 8899999999988765433333222 3478888888888889999999999998876554322 234577
Q ss_pred HHHHHHHhhcCCChHHHHHHHHHHHHHHHHH
Q 017249 321 EKIVYDIAARVDGADKAAETAKRLLQDMVQR 351 (375)
Q Consensus 321 ~~l~~~l~~~~~g~~~~~~~a~~~l~~l~~~ 351 (375)
+.++..+... +..+..+..+..++..+...
T Consensus 683 ~~l~~~l~~~-~~~~~vr~~~~~~l~~l~~~ 712 (861)
T 2bpt_A 683 NVLAQMISNP-NARRELKPAVLSVFGDIASN 712 (861)
T ss_dssp HHHHHHHHCT-TCCTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCc-cccHhhhHHHHHHHHHHHHH
Confidence 7777766532 11256778888888777654
No 56
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=99.23 E-value=3.6e-09 Score=109.05 Aligned_cols=316 Identities=14% Similarity=0.118 Sum_probs=213.5
Q ss_pred hHHHHHHHHhcCC-CHHHHHHHHHHHHHHHhhCChhhH--HHHHhcCChHHHHHhhCCC--CHHHHHHHHHHHHHhhccC
Q 017249 25 ALIEELSDKLING-DLETKIEAARDIRKVVKKSSLKTR--SEFAAAGVVQPLVLMLVSP--NLDAIESSLLALLNLAVRN 99 (375)
Q Consensus 25 ~~l~~Lv~~L~s~-~~~~~~~a~~~l~~l~~~~~~~~~--~~~~~~g~v~~Lv~~L~~~--~~~~~~~a~~~L~~L~~~~ 99 (375)
+.++.|+..+.++ ++..+..++.++..++..-.++.+ ... -...++.++..+.++ +.+++..++++|..+...-
T Consensus 134 ~ll~~L~~~l~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~-~~~ll~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~ 212 (861)
T 2bpt_A 134 ELMKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQALVSS-SNNILIAIVQGAQSTETSKAVRLAALNALADSLIFI 212 (861)
T ss_dssp HHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSSTTSSTTGGG-HHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGC
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCChhhhHHHHH-HHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 5678888888887 899999999999999875411211 000 112466777888877 8999999999999875321
Q ss_pred hhhH-HHHHHcCChHHHHHhhcCCChHHHHHHHHHHHHhhccCC--ChhHHHhcCChHHHHHHhccCCHHHHHHHHHHHH
Q 017249 100 ERNK-VKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAP--NKPAIAASGAAPLLVQILHSGSVQGRVDAVTALH 176 (375)
Q Consensus 100 ~~~r-~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~--~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~ 176 (375)
...- ........++.|...+.+.++.++..++.+|..++.... ....+ ....++.+...+.+.+..++..++..+.
T Consensus 213 ~~~~~~~~~~~~ll~~l~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l-~~~l~~~~~~~~~~~~~~vr~~a~~~l~ 291 (861)
T 2bpt_A 213 KNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYTFMKPYM-EQALYALTIATMKSPNDKVASMTVEFWS 291 (861)
T ss_dssp HHHHTSHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHGGGCHHHH-HHTHHHHHHHHTTCSSHHHHHHHHHHHH
T ss_pred HHHccChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 1110 000112246677777888899999999999999876432 12221 1266777888888889999999999998
Q ss_pred HhccCCCC--------------chhhh---hcCCcHHHHHHhhhcc-----cchHHHHHHHHHHHHhhCChhhhHHHhhc
Q 017249 177 YLSTCKEN--------------SSPIL---DATAVPPLINLLKDCK-----KYSKFAEKATALLEILSSSEEGRIAITNS 234 (375)
Q Consensus 177 ~L~~~~~~--------------~~~i~---~~g~i~~Lv~ll~~~~-----~~~~~~~~a~~~L~~l~~~~~~~~~~~~~ 234 (375)
.++..... ...+. -...++.++..+.... +...++..+..+|..++..-. ..++
T Consensus 292 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~~~--~~~~-- 367 (861)
T 2bpt_A 292 TICEEEIDIAYELAQFPQSPLQSYNFALSSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCG--NHIL-- 367 (861)
T ss_dssp HHHHHHHHHHHHHHHCTTCSCCCCCHHHHHHHHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHG--GGGH--
T ss_pred HHHHHHHhhhhhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHcc--HhHH--
Confidence 88753110 01111 1346777777776421 122567778888888875322 2222
Q ss_pred cCcHHHHHHHhccCChHHHHHHHHHHHHhcccCcHHHHHHHHHcCChHHHHHHhhhCCHHHHHHHHHHHHHhhcCChh--
Q 017249 235 DGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDTPQE-- 312 (375)
Q Consensus 235 ~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~~-- 312 (375)
...++.+...+.+.+...++.|+.+|..++.+..++...... ..+++.|+..+.+.++.+|..++++|..++..-..
T Consensus 368 ~~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l-~~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~ 446 (861)
T 2bpt_A 368 EPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYV-HQALPSILNLMNDQSLQVKETTAWCIGRIADSVAESI 446 (861)
T ss_dssp HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH-HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGS
T ss_pred HHHHHHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHH-HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhhhhc
Confidence 245666777777888899999999999999775322222222 35788899999999999999999999998865422
Q ss_pred --hhhhhhhHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHH
Q 017249 313 --KRLSSSVLEKIVYDIAARVDGADKAAETAKRLLQDMVQR 351 (375)
Q Consensus 313 --~~~~~g~~~~l~~~l~~~~~g~~~~~~~a~~~l~~l~~~ 351 (375)
...-..+++.++..+. +. ++.+..|..++..+.+.
T Consensus 447 ~~~~~~~~~l~~l~~~l~---~~-~~v~~~a~~al~~l~~~ 483 (861)
T 2bpt_A 447 DPQQHLPGVVQACLIGLQ---DH-PKVATNCSWTIINLVEQ 483 (861)
T ss_dssp CTTTTHHHHHHHHHHHHT---SC-HHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhc---cC-hHHHHHHHHHHHHHHHh
Confidence 2234557787877664 33 78888999999888764
No 57
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=99.23 E-value=3.4e-11 Score=121.02 Aligned_cols=196 Identities=19% Similarity=0.108 Sum_probs=148.3
Q ss_pred hHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHH-HhhCCCCHHHHHHHHHHHHHhhcc-Ch
Q 017249 23 KQALIEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLV-LMLVSPNLDAIESSLLALLNLAVR-NE 100 (375)
Q Consensus 23 ~~~~l~~Lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv-~~L~~~~~~~~~~a~~~L~~L~~~-~~ 100 (375)
....+.++++.|+|++++.|..|+++|.+++.+ +.++..+...|+|..++ .+|.+++.+++..|+++|+||+.+ .+
T Consensus 32 ~~~~i~Pll~~L~S~~~~~r~~A~~al~~l~~~--~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~ 109 (684)
T 4gmo_A 32 REDKILPVLKDLKSPDAKSRTTAAGAIANIVQD--AKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEA 109 (684)
T ss_dssp HHHTTHHHHHHHSSSCCSHHHHHHHHHHHHTTS--HHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCH
T ss_pred chhhHHHHHHHcCCCCHHHHHHHHHHHHHHHcC--cHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCc
Confidence 345567788999999999999999999999975 48999999999988765 578889999999999999999965 46
Q ss_pred hhHHHHHHcCChHHHHHhhcCCC---------------------hHHHHHHHHHHHHhhccCC-ChhHHHhcCChHHHHH
Q 017249 101 RNKVKIATAGAIPPLVELLKFQN---------------------GTLRELAAAAILTLSAAAP-NKPAIAASGAAPLLVQ 158 (375)
Q Consensus 101 ~~r~~i~~~g~i~~Lv~lL~~~~---------------------~~~~~~a~~~L~~Ls~~~~-~~~~i~~~~~l~~L~~ 158 (375)
+.+..++..|++++|..++++.. .++...++.+|++|+.... ....+...+.++.|+.
T Consensus 110 d~~~~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~~ 189 (684)
T 4gmo_A 110 DFCVHLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLLF 189 (684)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHHH
T ss_pred hHHHHHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHHH
Confidence 78899999999999999885311 1344567889999987654 4456667788999999
Q ss_pred HhccC---CHHHHHHHHHHHHHhccCC-CCchhhhhcCCcHHHHHHh--hhcccchHHHHHHHHHHHHhh
Q 017249 159 ILHSG---SVQGRVDAVTALHYLSTCK-ENSSPILDATAVPPLINLL--KDCKKYSKFAEKATALLEILS 222 (375)
Q Consensus 159 lL~~~---~~~~~~~a~~~L~~L~~~~-~~~~~i~~~g~i~~Lv~ll--~~~~~~~~~~~~a~~~L~~l~ 222 (375)
.|.+. ...++..|+.+|++|+.++ +....+.+.+....+..++ ..... ..+..++++|.|+.
T Consensus 190 ~L~~~~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~~~~~~~~~~ll~~~~~~~--~~~~la~giL~Ni~ 257 (684)
T 4gmo_A 190 RLISADIAPQDIYEEAISCLTTLSEDNLKVGQAITDDQETHVYDVLLKLATGTD--PRAVMACGVLHNVF 257 (684)
T ss_dssp HHHHHCCSCHHHHHHHHHHHHHHHTTCHHHHHHHHTCCSSCHHHHHHHHHHSSC--TTHHHHHHHHHHHH
T ss_pred HHHhcCCCcHHHHHHHHHHHHHHhccCHHHHHHHHhcchHHHHHHHHHHhcCCc--HHHHHHHHHHHhHh
Confidence 88543 3678999999999999775 4455555555433222222 22222 23456788888874
No 58
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=99.22 E-value=5.6e-10 Score=106.52 Aligned_cols=310 Identities=12% Similarity=0.086 Sum_probs=207.3
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCCC--CHHHHHHHHHHHHHhhccC-hhhH
Q 017249 27 IEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSP--NLDAIESSLLALLNLAVRN-ERNK 103 (375)
Q Consensus 27 l~~Lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~~--~~~~~~~a~~~L~~L~~~~-~~~r 103 (375)
-..++..|.++++.+ ..++.+|..++....+.. ...+.++.|++.+.++ ++.++..++.+|..++.+. ++.-
T Consensus 92 k~~ll~~l~~~~~~v-~~~~~~i~~ia~~~~~~~----~w~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~ 166 (462)
T 1ibr_B 92 KNYVLQTLGTETYRP-SSASQCVAGIACAEIPVN----QWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQL 166 (462)
T ss_dssp HHHHHHHTTCCCSSS-CSHHHHHHHHHHHHGGGT----CCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGT
T ss_pred HHHHHHHhCCCCchh-hHHHHHHHHHHHHhcccc----ccHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhh
Confidence 345777777777777 778888888887641110 1236789999999888 8999999999999999743 2211
Q ss_pred HHHHHcCChHHHHHhhcCC--ChHHHHHHHHHHHHhhccCC-C-hhHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhc
Q 017249 104 VKIATAGAIPPLVELLKFQ--NGTLRELAAAAILTLSAAAP-N-KPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLS 179 (375)
Q Consensus 104 ~~i~~~g~i~~Lv~lL~~~--~~~~~~~a~~~L~~Ls~~~~-~-~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~~L~ 179 (375)
... ....++.++..+.+. ++.+|..|+.++.++...-+ . .......-.++.+...+.+++..++..++.+|..++
T Consensus 167 ~~~-~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~ 245 (462)
T 1ibr_B 167 QDK-SNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIM 245 (462)
T ss_dssp GGG-HHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHH
T ss_pred HhH-HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Confidence 111 123577888899887 78999999999999754311 0 000011113566667778888999999999999988
Q ss_pred cCC-CCchhhhhcCCcHHHHHHhhhcccchHHHHHHHHHHHHhhCChhhhH------------------HHhh--ccCcH
Q 017249 180 TCK-ENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRI------------------AITN--SDGGI 238 (375)
Q Consensus 180 ~~~-~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~~~~~~~------------------~~~~--~~g~v 238 (375)
... +.....+..++++.++..+.+. ++.++..++..+..++....... .++. -...+
T Consensus 246 ~~~~~~~~~~~~~~l~~~~~~~~~~~--~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 323 (462)
T 1ibr_B 246 SLYYQYMETYMGPALFAITIEAMKSD--IDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLV 323 (462)
T ss_dssp HHCGGGCTTTTTTTHHHHHHHHHHCS--SHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCC--chHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhcc
Confidence 542 2111112215666666666554 45678888888888875431110 0110 02345
Q ss_pred HHHHHHhcc-------CChHHHHHHHHHHHHhcccCcHHHHHHHHHcCChHHHHHHhhhCCHHHHHHHHHHHHHhhcCCh
Q 017249 239 LTLVETVED-------GSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDTPQ 311 (375)
Q Consensus 239 ~~Lv~lL~~-------~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~ 311 (375)
+.++..+.+ .+...+..|+.+|..++...+. .+ -..+++.+...+.+.++.+|+.|..+|..++....
T Consensus 324 p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~----~~-~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~ 398 (462)
T 1ibr_B 324 PILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED----DI-VPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPE 398 (462)
T ss_dssp HHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTT----TH-HHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSC
T ss_pred HHHHHHHHhcccccccccchHHHHHHHHHHHHHHhccH----HH-HHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCc
Confidence 566666643 2346888999999998876421 11 13566777788888999999999999999997653
Q ss_pred hh---hhhhhhHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHH
Q 017249 312 EK---RLSSSVLEKIVYDIAARVDGADKAAETAKRLLQDMVQRS 352 (375)
Q Consensus 312 ~~---~~~~g~~~~l~~~l~~~~~g~~~~~~~a~~~l~~l~~~s 352 (375)
.. -.-..+++.++..|. +..+..+..|..+|..+....
T Consensus 399 ~~~~~~~l~~~~~~l~~~l~---d~~~~Vr~~a~~~l~~~~~~~ 439 (462)
T 1ibr_B 399 PSQLKPLVIQAMPTLIELMK---DPSVVVRDTAAWTVGRICELL 439 (462)
T ss_dssp TTTTCTTTTTHHHHHHHGGG---CSCHHHHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHHHhc
Confidence 21 122568888887774 566999999999999998653
No 59
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=99.19 E-value=7.5e-10 Score=114.34 Aligned_cols=316 Identities=12% Similarity=0.091 Sum_probs=205.2
Q ss_pred HhHHHHHHHHhcCC--CHHHHHHHHHHHHHHHhhCChhhHH-HHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhccCh
Q 017249 24 QALIEELSDKLING--DLETKIEAARDIRKVVKKSSLKTRS-EFAAAGVVQPLVLMLVSPNLDAIESSLLALLNLAVRNE 100 (375)
Q Consensus 24 ~~~l~~Lv~~L~s~--~~~~~~~a~~~l~~l~~~~~~~~~~-~~~~~g~v~~Lv~~L~~~~~~~~~~a~~~L~~L~~~~~ 100 (375)
...++.++..+.++ +++++..|++++..++..- +.+.. .......++.+.+.+.+.+.+++..++.+|..++...+
T Consensus 171 ~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~-~~~~~~~~~~~~il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~ 249 (876)
T 1qgr_A 171 NEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFT-KANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYY 249 (876)
T ss_dssp HHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGC-HHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSG
T ss_pred HHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHH-HHHHHhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhH
Confidence 34566677777765 6899999999999987653 22111 11111257777888888899999999999999997655
Q ss_pred hhHHHHHHcCChHHHHHhhcCCChHHHHHHHHHHHHhhccC-------------------CChhHH--HhcCChHHHHHH
Q 017249 101 RNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAA-------------------PNKPAI--AASGAAPLLVQI 159 (375)
Q Consensus 101 ~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~-------------------~~~~~i--~~~~~l~~L~~l 159 (375)
..-...+....++.++..+.+.++.++..++..+.+++... ...... .-...++.++..
T Consensus 250 ~~~~~~~~~~l~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~ 329 (876)
T 1qgr_A 250 QYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQT 329 (876)
T ss_dssp GGCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHHH
Confidence 43233333467888888888888999999999888887531 011111 013456677777
Q ss_pred hcc-------CCHHHHHHHHHHHHHhccCCCCchhhhhcCCcHHHHHHhhhcccchHHHHHHHHHHHHhhCCh--hhhHH
Q 017249 160 LHS-------GSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSE--EGRIA 230 (375)
Q Consensus 160 L~~-------~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~~~--~~~~~ 230 (375)
+.. .+..++..++.+|..++.... ..++ ..+++.+...+.+. +..+++.++.++..++... +....
T Consensus 330 l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~--~~~~-~~~l~~l~~~l~~~--~~~~r~~a~~~l~~i~~~~~~~~~~~ 404 (876)
T 1qgr_A 330 LTKQDENDDDDDWNPCKAAGVCLMLLATCCE--DDIV-PHVLPFIKEHIKNP--DWRYRDAAVMAFGCILEGPEPSQLKP 404 (876)
T ss_dssp TTCCCSSCCTTCCCHHHHHHHHHHHHHHHHG--GGGH-HHHHHHHHHHTTCS--SHHHHHHHHHHHHHTSSSSCHHHHHH
T ss_pred hhcccccccccccHHHHHHHHHHHHHHHHCc--HhhH-HHHHHHHHHHccCC--ChHHHHHHHHHHHHHHcCCCHHHHHH
Confidence 752 245678888889888875422 1122 23555566666554 4578899999999998753 22223
Q ss_pred HhhccCcHHHHHHHhccCChHHHHHHHHHHHHhcccCcHHH--HHHHHHcCChHHHHHHhhhCCHHHHHHHHHHHHHhhc
Q 017249 231 ITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKY--RQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRD 308 (375)
Q Consensus 231 ~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~--~~~l~~~g~v~~L~~ll~~~~~~~~~~A~~~L~~l~~ 308 (375)
.+ ...++.++..+.++++.+|..|+++|.+++....+.. ... -..+++.|+..+.+ ++.+++.|+++|..++.
T Consensus 405 ~~--~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~--l~~~l~~l~~~l~~-~~~v~~~a~~al~~l~~ 479 (876)
T 1qgr_A 405 LV--IQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVY--LAPLLQCLIEGLSA-EPRVASNVCWAFSSLAE 479 (876)
T ss_dssp HH--HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTT--HHHHHHHHHHHTTS-CHHHHHHHHHHHHHHHH
T ss_pred HH--HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccHHH--HHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHH
Confidence 33 3588899999999999999999999999987642210 011 13466777777766 49999999999999875
Q ss_pred CCh--------------h--hhhhhhhHHHHHHHHhhcCCChHHHHHHHHHHHHHHHH
Q 017249 309 TPQ--------------E--KRLSSSVLEKIVYDIAARVDGADKAAETAKRLLQDMVQ 350 (375)
Q Consensus 309 ~~~--------------~--~~~~~g~~~~l~~~l~~~~~g~~~~~~~a~~~l~~l~~ 350 (375)
... . .-.-..+++.|+..+..........+..+..++..+.+
T Consensus 480 ~~~~~~~~~~~~~~~~~~~l~~~~~~il~~L~~~l~~~~~~~~~~r~~~~~~l~~l~~ 537 (876)
T 1qgr_A 480 AAYEAADVADDQEEPATYCLSSSFELIVQKLLETTDRPDGHQNNLRSSAYESLMEIVK 537 (876)
T ss_dssp HHHHTTSCTTSCCCCCCCSSTTTHHHHHHHHHHHTTSCSSCSTTHHHHHHHHHHHHHH
T ss_pred HhhhccccccccccccchhhhHhHHHHHHHHHHHHhCcCcchhhHHHHHHHHHHHHHH
Confidence 422 1 11224567777666542211123444555555555543
No 60
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=99.14 E-value=2.9e-10 Score=114.22 Aligned_cols=195 Identities=14% Similarity=0.105 Sum_probs=147.6
Q ss_pred CChHHHHHhhCCCCHHHHHHHHHHHHHhhccChhhHHHHHHcCChHHHH-HhhcCCChHHHHHHHHHHHHhhccCC--Ch
Q 017249 68 GVVQPLVLMLVSPNLDAIESSLLALLNLAVRNERNKVKIATAGAIPPLV-ELLKFQNGTLRELAAAAILTLSAAAP--NK 144 (375)
Q Consensus 68 g~v~~Lv~~L~~~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv-~lL~~~~~~~~~~a~~~L~~Ls~~~~--~~ 144 (375)
..+.++++.|++++++.|..|+++|.+|+. ++..+..+...+++..++ .+|.+++.+++..|+++|.||+.... ..
T Consensus 34 ~~i~Pll~~L~S~~~~~r~~A~~al~~l~~-~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~ 112 (684)
T 4gmo_A 34 DKILPVLKDLKSPDAKSRTTAAGAIANIVQ-DAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFC 112 (684)
T ss_dssp HTTHHHHHHHSSSCCSHHHHHHHHHHHHTT-SHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred hhHHHHHHHcCCCCHHHHHHHHHHHHHHHc-CcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHH
Confidence 346678889999999999999999999997 788999999999988765 56888899999999999999998753 45
Q ss_pred hHHHhcCChHHHHHHhccCC---------------------HHHHHHHHHHHHHhccCC-CCchhhhhcCCcHHHHHHhh
Q 017249 145 PAIAASGAAPLLVQILHSGS---------------------VQGRVDAVTALHYLSTCK-ENSSPILDATAVPPLINLLK 202 (375)
Q Consensus 145 ~~i~~~~~l~~L~~lL~~~~---------------------~~~~~~a~~~L~~L~~~~-~~~~~i~~~g~i~~Lv~ll~ 202 (375)
..+...|++++|..++++.. ..+...++.+|++|+... +....+...+.++.|+..+.
T Consensus 113 ~~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~~~L~ 192 (684)
T 4gmo_A 113 VHLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLLFRLI 192 (684)
T ss_dssp HHHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHHHHHH
Confidence 66778899999999885311 124556888999999654 45567777899999999886
Q ss_pred hcc-cchHHHHHHHHHHHHhhCCh-hhhHHHhhccCcH--HHHHHHhccCChHHHHHHHHHHHHhc
Q 017249 203 DCK-KYSKFAEKATALLEILSSSE-EGRIAITNSDGGI--LTLVETVEDGSLVSTQHAVGALLSLC 264 (375)
Q Consensus 203 ~~~-~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~g~v--~~Lv~lL~~~~~~~~~~a~~~L~~l~ 264 (375)
+.. ....+...++.+|.+++.+. .....+. +.+.. ..++-.+...+...+..++++|.|+.
T Consensus 193 ~~~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~-~~~~~~~~~~ll~~~~~~~~~~~la~giL~Ni~ 257 (684)
T 4gmo_A 193 SADIAPQDIYEEAISCLTTLSEDNLKVGQAIT-DDQETHVYDVLLKLATGTDPRAVMACGVLHNVF 257 (684)
T ss_dssp HHCCSCHHHHHHHHHHHHHHHTTCHHHHHHHH-TCCSSCHHHHHHHHHHSSCTTHHHHHHHHHHHH
T ss_pred hcCCCcHHHHHHHHHHHHHHhccCHHHHHHHH-hcchHHHHHHHHHHhcCCcHHHHHHHHHHHhHh
Confidence 543 34478889999999999864 4444454 44432 22222233344556778999999874
No 61
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=99.11 E-value=4.7e-09 Score=104.33 Aligned_cols=287 Identities=11% Similarity=0.046 Sum_probs=185.8
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhccChhhHHH
Q 017249 26 LIEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIESSLLALLNLAVRNERNKVK 105 (375)
Q Consensus 26 ~l~~Lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~~~~~~~~~a~~~L~~L~~~~~~~r~~ 105 (375)
.+..+.+-|+++++.++..|+++|.++... +.. ...++.+.++|.+.++.++..|+.++.++...+++..
T Consensus 108 ~in~l~kDL~~~n~~vr~lAL~~L~~i~~~---~~~-----~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~~v-- 177 (618)
T 1w63_A 108 MTNCIKNDLNHSTQFVQGLALCTLGCMGSS---EMC-----RDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPELM-- 177 (618)
T ss_dssp HHHHHHHHHSCSSSHHHHHHHHHHHHHCCH---HHH-----HHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGGGG--
T ss_pred HHHHHHHhcCCCCHhHHHHHHHHHHhcCCH---HHH-----HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHChHHH--
Confidence 345556666677778888888888777632 221 2347788889999999999999999999998666432
Q ss_pred HHHcCChHHHHHhhcCCChHHHHHHHHHHHHhhccCCChhHHHhcCChHHHHHHhcc---------------CCHHHHHH
Q 017249 106 IATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHS---------------GSVQGRVD 170 (375)
Q Consensus 106 i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~l~~L~~lL~~---------------~~~~~~~~ 170 (375)
.+.++.+..+|.+.++.++..|+.+|..++..++.. .-.-...++.++.+|.+ .++-.+..
T Consensus 178 ---~~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~~-~~~~~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~ 253 (618)
T 1w63_A 178 ---EMFLPATKNLLNEKNHGVLHTSVVLLTEMCERSPDM-LAHFRKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVR 253 (618)
T ss_dssp ---GGGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHHHH-HHHHHTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHH
T ss_pred ---HHHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhChHH-HHHHHHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHH
Confidence 267888889998899999999999999997653211 11123678888887763 36777888
Q ss_pred HHHHHHHhccCCCCchhhhhcCCcHHHHHHhhhc----ccchHHHHHHHHHHHHhhCChhhhHHHhhccCcHHHHHHHhc
Q 017249 171 AVTALHYLSTCKENSSPILDATAVPPLINLLKDC----KKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVE 246 (375)
Q Consensus 171 a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~----~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~Lv~lL~ 246 (375)
.+.+|..++..+.. .....++.|..++... +....+...|..++..+...+..+ ..++..|..+|.
T Consensus 254 il~~L~~l~~~~~~----~~~~~~~~L~~l~~~~~~~~~~~~aV~~ea~~~i~~l~~~~~l~------~~a~~~L~~~L~ 323 (618)
T 1w63_A 254 ILRLLRILGRNDDD----SSEAMNDILAQVATNTETSKNVGNAILYETVLTIMDIKSESGLR------VLAINILGRFLL 323 (618)
T ss_dssp HHHHHHHHTTTCHH----HHHTTHHHHHHHHHTSCCSSTHHHHHHHHHHHHHHHSCCCHHHH------HHHHHHHHHHHT
T ss_pred HHHHHHHhCCCCHH----HHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhcCCCHHHH------HHHHHHHHHHHh
Confidence 89999988865321 1123445555555321 112245566777777765443221 135677778888
Q ss_pred cCChHHHHHHHHHHHHhcccCcHHHHHHHHHcCChHHHHHHhhhCCHHHHHHHHHHHHHhhcCChhhhhhhhhHHHHHHH
Q 017249 247 DGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDTPQEKRLSSSVLEKIVYD 326 (375)
Q Consensus 247 ~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~~~~~~~g~~~~l~~~ 326 (375)
++++.++..|+.+|..++... +. ++ ......++..+.+.++.+|..|..+|..++....- ..+++.|+..
T Consensus 324 ~~d~~vr~~aL~~L~~i~~~~-p~----~~-~~~~~~i~~~l~d~d~~Ir~~alelL~~l~~~~nv----~~iv~eL~~~ 393 (618)
T 1w63_A 324 NNDKNIRYVALTSLLKTVQTD-HN----AV-QRHRSTIVDCLKDLDVSIKRRAMELSFALVNGNNI----RGMMKELLYF 393 (618)
T ss_dssp CSSTTTHHHHHHHHHHHHHHH-HH----HH-GGGHHHHHHGGGSSCHHHHHHHHHHHHHHCCSSST----HHHHHHHHHH
T ss_pred CCCCchHHHHHHHHHHHHhhC-HH----HH-HHHHHHHHHHccCCChhHHHHHHHHHHHHcccccH----HHHHHHHHHH
Confidence 778888888888888887643 21 12 22445666777777788888888888777765421 1234445544
Q ss_pred HhhcCCChHHHHHHHHHHHHHHH
Q 017249 327 IAARVDGADKAAETAKRLLQDMV 349 (375)
Q Consensus 327 l~~~~~g~~~~~~~a~~~l~~l~ 349 (375)
+.. .+...+..+...+..+.
T Consensus 394 l~~---~d~e~r~~~v~~I~~la 413 (618)
T 1w63_A 394 LDS---CEPEFKADCASGIFLAA 413 (618)
T ss_dssp HHH---CCHHHHHHHHHHHHHHH
T ss_pred HHh---CCHHHHHHHHHHHHHHH
Confidence 431 22455555555555543
No 62
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=99.06 E-value=1.8e-08 Score=100.19 Aligned_cols=289 Identities=15% Similarity=0.052 Sum_probs=199.5
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhccChhhHHH
Q 017249 26 LIEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIESSLLALLNLAVRNERNKVK 105 (375)
Q Consensus 26 ~l~~Lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~~~~~~~~~a~~~L~~L~~~~~~~r~~ 105 (375)
+....++++.+++.+.|.-.--.+..++..+ ++..- + ++..|.+-|.++++.++..|+++|+++.. ++.-
T Consensus 71 ~~~~vik~~~s~~~~~Krl~Yl~~~~~~~~~-~e~~~-l----~in~l~kDL~~~n~~vr~lAL~~L~~i~~--~~~~-- 140 (618)
T 1w63_A 71 GQLECLKLIASQKFTDKRIGYLGAMLLLDER-QDVHL-L----MTNCIKNDLNHSTQFVQGLALCTLGCMGS--SEMC-- 140 (618)
T ss_dssp GHHHHHHHHHSSSHHHHHHHHHHHHHHCCCC-HHHHH-H----HHHHHHHHHSCSSSHHHHHHHHHHHHHCC--HHHH--
T ss_pred hHHHHHHHHcCCchHHHHHHHHHHHHHhCCC-cHHHH-H----HHHHHHHhcCCCCHhHHHHHHHHHHhcCC--HHHH--
Confidence 4556666677777777777777777777665 32211 1 36778888899999999999999999984 3221
Q ss_pred HHHcCChHHHHHhhcCCChHHHHHHHHHHHHhhccCCChhHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCCCC-
Q 017249 106 IATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTCKEN- 184 (375)
Q Consensus 106 i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~~L~~~~~~- 184 (375)
...++.+..+|.+.++.+|..|+.++.++....+. . . .+.++.+.++|.+.++.++..|+.+|..++..+..
T Consensus 141 ---~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~--~-v-~~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~~ 213 (618)
T 1w63_A 141 ---RDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPE--L-M-EMFLPATKNLLNEKNHGVLHTSVVLLTEMCERSPDM 213 (618)
T ss_dssp ---HHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGG--G-G-GGGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHHHH
T ss_pred ---HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHChH--H-H-HHHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhChHH
Confidence 24577899999999999999999999999874331 1 1 36788888999999999999999999999865321
Q ss_pred chhhhhcCCcHHHHHHhhhc-------------ccchHHHHHHHHHHHHhhCChhhhHHHhhccCcHHHHHHHhc-----
Q 017249 185 SSPILDATAVPPLINLLKDC-------------KKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVE----- 246 (375)
Q Consensus 185 ~~~i~~~g~i~~Lv~ll~~~-------------~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~Lv~lL~----- 246 (375)
...+ ...++.++++|.+- ..++-.+...+.+|..++....... ....+.|..++.
T Consensus 214 ~~~~--~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~~~~~-----~~~~~~L~~l~~~~~~~ 286 (618)
T 1w63_A 214 LAHF--RKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDDDSS-----EAMNDILAQVATNTETS 286 (618)
T ss_dssp HHHH--HTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTCHHHH-----HTTHHHHHHHHHTSCCS
T ss_pred HHHH--HHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCCHHHH-----HHHHHHHHHHHhccccc
Confidence 1111 25788888877641 1234455667888888886432211 133444444442
Q ss_pred -cCChHHHHHHHHHHHHhcccCcHHHHHHHHHcCChHHHHHHhhhCCHHHHHHHHHHHHHhhcCChhhhhhhhhHHHHHH
Q 017249 247 -DGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDTPQEKRLSSSVLEKIVY 325 (375)
Q Consensus 247 -~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~~~~~~~g~~~~l~~ 325 (375)
+.+..+...|+.++..+... +..+ ..+++.|..++.+.++.+|..|..+|..+....+.. +.. ....++.
T Consensus 287 ~~~~~aV~~ea~~~i~~l~~~--~~l~-----~~a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~~p~~-~~~-~~~~i~~ 357 (618)
T 1w63_A 287 KNVGNAILYETVLTIMDIKSE--SGLR-----VLAINILGRFLLNNDKNIRYVALTSLLKTVQTDHNA-VQR-HRSTIVD 357 (618)
T ss_dssp STHHHHHHHHHHHHHHHSCCC--HHHH-----HHHHHHHHHHHTCSSTTTHHHHHHHHHHHHHHHHHH-HGG-GHHHHHH
T ss_pred cchHHHHHHHHHHHHHhcCCC--HHHH-----HHHHHHHHHHHhCCCCchHHHHHHHHHHHHhhCHHH-HHH-HHHHHHH
Confidence 23457788899999887542 2222 246788889999999999999999999998765432 211 3334544
Q ss_pred HHhhcCCChHHHHHHHHHHHHHHHH
Q 017249 326 DIAARVDGADKAAETAKRLLQDMVQ 350 (375)
Q Consensus 326 ~l~~~~~g~~~~~~~a~~~l~~l~~ 350 (375)
.+. +.....+.+|..+|..+..
T Consensus 358 ~l~---d~d~~Ir~~alelL~~l~~ 379 (618)
T 1w63_A 358 CLK---DLDVSIKRRAMELSFALVN 379 (618)
T ss_dssp GGG---SSCHHHHHHHHHHHHHHCC
T ss_pred Hcc---CCChhHHHHHHHHHHHHcc
Confidence 443 4447788888888777753
No 63
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=99.02 E-value=8.1e-09 Score=110.73 Aligned_cols=308 Identities=12% Similarity=0.066 Sum_probs=200.2
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhccChhhH-
Q 017249 25 ALIEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIESSLLALLNLAVRNERNK- 103 (375)
Q Consensus 25 ~~l~~Lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~~~~~~~~~a~~~L~~L~~~~~~~r- 103 (375)
..++.++..|.+.++++|..|+.+|..++...++.... .+++.|+..|.++++.+|..++.+|..++.......
T Consensus 48 ~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~~~~~-----~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~ 122 (1230)
T 1u6g_C 48 KVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEYQVE-----TIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASS 122 (1230)
T ss_dssp HHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCHHHHH-----HHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC----
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCHHHHH-----HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCccc
Confidence 56888999999999999999999999999776232222 347788888888888999999999999886433220
Q ss_pred ----HHHHHcCChHHHHHhhc-CCChHHHHHHHHHHHHhhccCCC--hhHHHhcCChHHHHHHhccCCHHHHHHHHHHHH
Q 017249 104 ----VKIATAGAIPPLVELLK-FQNGTLRELAAAAILTLSAAAPN--KPAIAASGAAPLLVQILHSGSVQGRVDAVTALH 176 (375)
Q Consensus 104 ----~~i~~~g~i~~Lv~lL~-~~~~~~~~~a~~~L~~Ls~~~~~--~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~ 176 (375)
..-.-...+|.|+..+. +.++.++..|+.++..++..... ... ....++.|+..|.+++..++..|+.+|.
T Consensus 123 ~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~~~~~l~~~--~~~ll~~l~~~L~~~~~~vR~~a~~al~ 200 (1230)
T 1u6g_C 123 GSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNF--HPSILTCLLPQLTSPRLAVRKRTIIALG 200 (1230)
T ss_dssp -CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCTTT--HHHHHHHHGGGGGCSSHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhHhHHHHH--HHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 11122356889999998 57899999999999998854221 111 1346777888888889999999999999
Q ss_pred HhccCCCCchhhhhcCCcHHHHHHhhhcccchHHHHHHHHHHHHhhCC-hhhhHHHhhccCcHHHHHHHhccCChHHHHH
Q 017249 177 YLSTCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSS-EEGRIAITNSDGGILTLVETVEDGSLVSTQH 255 (375)
Q Consensus 177 ~L~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~ 255 (375)
.++...+.. + -...++.++..+.+... ..++..++.++..++.. +..-... -...++.++..+.+.++.+|..
T Consensus 201 ~l~~~~~~~--~-~~~~l~~l~~~L~~~~~-~~~r~~a~~~l~~l~~~~~~~~~~~--l~~l~~~ll~~l~d~~~~vR~~ 274 (1230)
T 1u6g_C 201 HLVMSCGNI--V-FVDLIEHLLSELSKNDS-MSTTRTYIQCIAAISRQAGHRIGEY--LEKIIPLVVKFCNVDDDELREY 274 (1230)
T ss_dssp HHTTTC-------CTTHHHHHHHHHHHTCS-SCSCTTHHHHHHHHHHHSSGGGTTS--CTTHHHHHHHHHSSCCTTTHHH
T ss_pred HHHHhcCHH--H-HHHHHHHHHHHhccCCc-hhHHHHHHHHHHHHHHHhHHHHHHH--HHHHHHHHHHHhcCCCHHHHHH
Confidence 998653221 1 12467888888876532 23345567777766642 2211111 1467888999998888889999
Q ss_pred HHHHHHHhcccCcHHHHHHHHHcCChHHHHHHhh-------------------------------------hCCHHHHHH
Q 017249 256 AVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTV-------------------------------------EGTFEAQER 298 (375)
Q Consensus 256 a~~~L~~l~~~~~~~~~~~l~~~g~v~~L~~ll~-------------------------------------~~~~~~~~~ 298 (375)
++.++..++...+.+....+ ..+++.++..+. +....+|+.
T Consensus 275 a~~~l~~l~~~~~~~~~~~l--~~li~~ll~~l~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~ 352 (1230)
T 1u6g_C 275 CIQAFESFVRRCPKEVYPHV--STIINICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRA 352 (1230)
T ss_dssp HHHHHHHHHHCTTCCCHHHH--HHHHHHHTTCCCCC------------------------------------CTTHHHHH
T ss_pred HHHHHHHHHHHChHHHHHhH--HHHHHHHHHHhCCCCCCCCcccccccccccccccccchhhcccccccccccCHHHHHH
Confidence 99999888775432211111 223344433221 112457889
Q ss_pred HHHHHHHhhcCChh--hhhhhhhHHHHHHHHhhcCCChHHHHHHHHHHHHHHHH
Q 017249 299 ARTLLDLLRDTPQE--KRLSSSVLEKIVYDIAARVDGADKAAETAKRLLQDMVQ 350 (375)
Q Consensus 299 A~~~L~~l~~~~~~--~~~~~g~~~~l~~~l~~~~~g~~~~~~~a~~~l~~l~~ 350 (375)
|+.+|..+....+. .-+-..+++.++..+ .+..+..+..+..++..+++
T Consensus 353 A~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l---~d~~~~Vr~~a~~~l~~l~~ 403 (1230)
T 1u6g_C 353 AAKCLDAVVSTRHEMLPEFYKTVSPALISRF---KEREENVKADVFHAYLSLLK 403 (1230)
T ss_dssp HHHHHHHHHTTCCTTHHHHHTTTHHHHHSTT---SCSSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhchhHHHHHHHHHHHHHHHHc---CCCchHHHHHHHHHHHHHHH
Confidence 99999988874432 111122344444333 23345666666666666654
No 64
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=98.99 E-value=2.2e-09 Score=115.19 Aligned_cols=274 Identities=14% Similarity=0.141 Sum_probs=190.5
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhccChhhHH
Q 017249 25 ALIEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIESSLLALLNLAVRNERNKV 104 (375)
Q Consensus 25 ~~l~~Lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~~~~~~~~~a~~~L~~L~~~~~~~r~ 104 (375)
..++.++..+.++|++.+..|...|.+....++... ..-.....++.|++.|.++++++|..|+.+|..++...++ .
T Consensus 6 ~~l~~lL~~l~s~d~~~R~~A~~~L~~~l~~~~~~~-~~~~~~~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~--~ 82 (1230)
T 1u6g_C 6 YHISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKL-DDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKE--Y 82 (1230)
T ss_dssp HHHHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSC-CTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCH--H
T ss_pred hHHHHHHHhcCCCCHhHHHHHHHHHHHHHcccccCC-ChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCH--H
Confidence 347788899999999999999999888765431100 0001113477899999999999999999999999865433 1
Q ss_pred HHHHcCChHHHHHhhcCCChHHHHHHHHHHHHhhccCCCh------hHHHhcCChHHHHHHhc-cCCHHHHHHHHHHHHH
Q 017249 105 KIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNK------PAIAASGAAPLLVQILH-SGSVQGRVDAVTALHY 177 (375)
Q Consensus 105 ~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~------~~i~~~~~l~~L~~lL~-~~~~~~~~~a~~~L~~ 177 (375)
. -...++.|+..+.++++.+|..++.+|..++..-... ..-.....++.|+..+. +++..++..|+.+|..
T Consensus 83 ~--~~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~ 160 (1230)
T 1u6g_C 83 Q--VETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMAD 160 (1230)
T ss_dssp H--HHHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHH
T ss_pred H--HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHH
Confidence 1 1235678888888888899999999999987653321 11124567889999998 5788999999999999
Q ss_pred hccC-CCCchhhhhcCCcHHHHHHhhhcccchHHHHHHHHHHHHhhCChhhhHHHhhccCcHHHHHHHhccCC-hHHHHH
Q 017249 178 LSTC-KENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGS-LVSTQH 255 (375)
Q Consensus 178 L~~~-~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~-~~~~~~ 255 (375)
++.. ++.... .-...++.++..+.+. +..++..+..+|..++...... ++ ...++.++..|.+.+ ...+..
T Consensus 161 ~~~~~~~~l~~-~~~~ll~~l~~~L~~~--~~~vR~~a~~al~~l~~~~~~~--~~--~~~l~~l~~~L~~~~~~~~r~~ 233 (1230)
T 1u6g_C 161 MLSRQGGLLVN-FHPSILTCLLPQLTSP--RLAVRKRTIIALGHLVMSCGNI--VF--VDLIEHLLSELSKNDSMSTTRT 233 (1230)
T ss_dssp HHHHTCSSCTT-THHHHHHHHGGGGGCS--SHHHHHHHHHHHHHHTTTC------C--TTHHHHHHHHHHHTCSSCSCTT
T ss_pred HHHHhHhHHHH-HHHHHHHHHHHHHcCC--cHHHHHHHHHHHHHHHHhcCHH--HH--HHHHHHHHHHhccCCchhHHHH
Confidence 8843 221111 1133566666666654 4578899999999998653322 22 357888888886543 456677
Q ss_pred HHHHHHHhcccCcHHHHHHHHHcCChHHHHHHhhhCCHHHHHHHHHHHHHhhcCChh
Q 017249 256 AVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDTPQE 312 (375)
Q Consensus 256 a~~~L~~l~~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~~ 312 (375)
++.++..++...+..... .-..+++.++..+.+.++.+|+.+..++..+....+.
T Consensus 234 a~~~l~~l~~~~~~~~~~--~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~~~~ 288 (1230)
T 1u6g_C 234 YIQCIAAISRQAGHRIGE--YLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPK 288 (1230)
T ss_dssp HHHHHHHHHHHSSGGGTT--SCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHhHHHHHH--HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHChH
Confidence 888888887654221111 1146888999988888999999999999988876543
No 65
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=98.92 E-value=1.4e-07 Score=78.99 Aligned_cols=190 Identities=14% Similarity=0.095 Sum_probs=150.1
Q ss_pred hHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhccChhh
Q 017249 23 KQALIEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIESSLLALLNLAVRNERN 102 (375)
Q Consensus 23 ~~~~l~~Lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~~~~~~~~~a~~~L~~L~~~~~~~ 102 (375)
..+.+..|+++|+..|+.++..++.+|.++...- +.......-..+++.+++++.+.+..+...|+++|..|-.+.|-.
T Consensus 31 ~e~~l~~L~~LL~dkD~~vk~raL~~LeellK~~-~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~ 109 (265)
T 3b2a_A 31 DKRALFLILELAGEDDETTRLRAFVALGEILKRA-DSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMG 109 (265)
T ss_dssp CHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBC
T ss_pred chhHHHHHHHHHhccchHHHHHHHHHHHHHHHhc-cccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCC
Confidence 4557889999999999999999999999999885 333333333456999999999999999999999999999876666
Q ss_pred HHHHHHcCChHHHHHhhcCCChHHHHHHHHHHHHhhccCCChhHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCC
Q 017249 103 KVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTCK 182 (375)
Q Consensus 103 r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~~L~~~~ 182 (375)
...+.. ....|..++.++++-.+..++..+..+...... .+.+..+..++.+.+..++..++.++-+++...
T Consensus 110 ~~~y~K--l~~aL~dlik~~~~il~~eaae~Lgklkv~~~~------~~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S 181 (265)
T 3b2a_A 110 SKTFLK--AAKTLVSLLESPDDMMRIETIDVLSKLQPLEDS------KLVRTYINELVVSPDLYTKVAGFCLFLNMLNSS 181 (265)
T ss_dssp HHHHHH--HHHHHHHHTTSCCHHHHHHHHHHHHHCCBSCCC------HHHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGC
T ss_pred HHHHHH--HHHHHHHHhcCCCchHHHHHHHHhCcCCcccch------HHHHHHHHHHHhCCChhHHHHHHHHHHHhhccc
Confidence 666555 256899999999999999999999999333222 355788999999999999999999999999654
Q ss_pred CCchhhhhcCCcHHHHHHhhhcccchHHHHHHHHHHHHhhCCh
Q 017249 183 ENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSE 225 (375)
Q Consensus 183 ~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~~~ 225 (375)
++...+ .+++..+-.++.+. ++.+++.|+.++..+...+
T Consensus 182 ~D~~i~--~~I~~eI~elL~~e--D~~l~e~aLd~Le~ils~p 220 (265)
T 3b2a_A 182 ADSGHL--TLILDEIPSLLQND--NEFIVELALDVLEKALSFP 220 (265)
T ss_dssp SSCCCG--GGTTTTHHHHHTCS--CHHHHHHHHHHHHHHTTSC
T ss_pred CCHHHH--HHHHHHHHHHHcCC--CHHHHHHHHHHHHHHHcCc
Confidence 333322 12455566677776 5678899999999888764
No 66
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=98.90 E-value=2.4e-07 Score=91.91 Aligned_cols=292 Identities=13% Similarity=0.087 Sum_probs=190.7
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhccChhhHHH
Q 017249 26 LIEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIESSLLALLNLAVRNERNKVK 105 (375)
Q Consensus 26 ~l~~Lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~~~~~~~~~a~~~L~~L~~~~~~~r~~ 105 (375)
+....++.+.+++.+.|+-+--.+..++..+ ++... + ++..+.+-|.++++-++-.|+++|+++.. ++.-.
T Consensus 75 ~~~~vvkl~~s~~~~~Krl~YL~l~~~~~~~-~e~~~-L----~iN~l~kDl~~~n~~ir~lALr~L~~i~~--~e~~~- 145 (621)
T 2vgl_A 75 GHMEAVNLLSSNRYTEKQIGYLFISVLVNSN-SELIR-L----INNAIKNDLASRNPTFMGLALHCIANVGS--REMAE- 145 (621)
T ss_dssp CHHHHHHGGGCSCHHHHHHHHHHHHHSCCCC-HHHHH-H----HHHHHHHHHHSCCHHHHHHHHHHHHHHCC--HHHHH-
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHccCC-cHHHH-H----HHHHHHHhcCCCCHHHHHHHHHHhhccCC--HHHHH-
Confidence 4566777778888888888888888888776 33221 2 25667777889999999999999999964 44222
Q ss_pred HHHcCChHHHHHhh--cCCChHHHHHHHHHHHHhhccCCChhHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCCC
Q 017249 106 IATAGAIPPLVELL--KFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTCKE 183 (375)
Q Consensus 106 i~~~g~i~~Lv~lL--~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~~L~~~~~ 183 (375)
..++.+.+.+ .+.++.+|..|+.++.++....+ ..+...+.++.+.++|.+.++.++..|+.++..++..+.
T Consensus 146 ----~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p--~~~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~ 219 (621)
T 2vgl_A 146 ----AFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSP--DLVPMGDWTSRVVHLLNDQHLGVVTAATSLITTLAQKNP 219 (621)
T ss_dssp ----HHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCG--GGCCCCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCH
T ss_pred ----HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhCh--hhcCchhHHHHHHHHhCCCCccHHHHHHHHHHHHHHhCh
Confidence 3467899999 88899999999999999987433 222224889999999999999999999999999986432
Q ss_pred CchhhhhcCCcHHHHHHhh----hccc-----------chHHHHHHHHHHHHhhCC--hhhhHHHhhccCcHHHHHHHhc
Q 017249 184 NSSPILDATAVPPLINLLK----DCKK-----------YSKFAEKATALLEILSSS--EEGRIAITNSDGGILTLVETVE 246 (375)
Q Consensus 184 ~~~~i~~~g~i~~Lv~ll~----~~~~-----------~~~~~~~a~~~L~~l~~~--~~~~~~~~~~~g~v~~Lv~lL~ 246 (375)
. .+ ...++.+++.|. .+.. ++-.+-..+.+|..++.. ++.+..+. ..+..++..+.
T Consensus 220 ~--~~--~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d~~~~~~l~---~~L~~il~~~~ 292 (621)
T 2vgl_A 220 E--EF--KTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLT---ECLETILNKAQ 292 (621)
T ss_dssp H--HH--TTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSSHHHHHHHH---HHHHHHHHHHH
T ss_pred H--HH--HHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCCCHHHHHHHH---HHHHHHHHhhc
Confidence 1 11 123444444333 2111 233444466666666642 33333333 24444444332
Q ss_pred ---------cCC--hHHHHHHHHHHHHhcccCcHHHHHHHHHcCChHHHHHHhhhCCHHHHHHHHHHHHHhhcCChh-hh
Q 017249 247 ---------DGS--LVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDTPQE-KR 314 (375)
Q Consensus 247 ---------~~~--~~~~~~a~~~L~~l~~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~~-~~ 314 (375)
+.+ ..+.-.|+.++..+... ++... .++..|..++.+.++.+|..|...|..+....+. ..
T Consensus 293 ~~~ks~~l~~~n~~~aVl~ea~~~i~~l~~~--~~~~~-----~~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~~~~ 365 (621)
T 2vgl_A 293 EPPKSKKVQHSNAKNAVLFEAISLIIHHDSE--PNLLV-----RACNQLGQFLQHRETNLRYLALESMCTLASSEFSHEA 365 (621)
T ss_dssp SCCSCSSHHHHHHHHHHHHHHHHHHHHHCCC--HHHHH-----HHHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTTHHH
T ss_pred cCcccccccccchHHHHHHHHHHHHHhcCCc--HHHHH-----HHHHHHHHHhcCCCcchHHHHHHHHHHHHhccCcHHH
Confidence 112 26677788888887532 23222 3566788888888999999999999998876542 22
Q ss_pred hhhhhHHHHHHHHhhcCCChHHHHHHHHHHHHHHH
Q 017249 315 LSSSVLEKIVYDIAARVDGADKAAETAKRLLQDMV 349 (375)
Q Consensus 315 ~~~g~~~~l~~~l~~~~~g~~~~~~~a~~~l~~l~ 349 (375)
++ .....++..|. .+...-.+.+|..+|-.|.
T Consensus 366 ~~-~~~~~i~~~L~--~d~d~~Ir~~aL~lL~~l~ 397 (621)
T 2vgl_A 366 VK-THIETVINALK--TERDVSVRQRAVDLLYAMC 397 (621)
T ss_dssp HH-TTHHHHHHHHT--TCCCHHHHHHHHHHHHHHC
T ss_pred HH-HHHHHHHHHhc--cCCCHhHHHHHHHHHHHHc
Confidence 22 12333443342 1444667777777776665
No 67
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=98.69 E-value=1.3e-06 Score=86.71 Aligned_cols=271 Identities=15% Similarity=0.109 Sum_probs=177.9
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhh--CCCCHHHHHHHHHHHHHhhccChhhHH
Q 017249 27 IEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLML--VSPNLDAIESSLLALLNLAVRNERNKV 104 (375)
Q Consensus 27 l~~Lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L--~~~~~~~~~~a~~~L~~L~~~~~~~r~ 104 (375)
+..+.+-|+++++..+-.|+.++.++.. ++... ..++.+.++| .+.++.+++.|+.++.++...+++.-
T Consensus 113 iN~l~kDl~~~n~~ir~lALr~L~~i~~---~e~~~-----~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~~~- 183 (621)
T 2vgl_A 113 NNAIKNDLASRNPTFMGLALHCIANVGS---REMAE-----AFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPDLV- 183 (621)
T ss_dssp HHHHHHHHHSCCHHHHHHHHHHHHHHCC---HHHHH-----HHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGGGC-
T ss_pred HHHHHHhcCCCCHHHHHHHHHHhhccCC---HHHHH-----HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChhhc-
Confidence 4455566678899999999999988843 23222 3478889999 88999999999999999998655322
Q ss_pred HHHHcCChHHHHHhhcCCChHHHHHHHHHHHHhhccCCChhHHHhcCChHHHHH----HhccC-------------CHHH
Q 017249 105 KIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQ----ILHSG-------------SVQG 167 (375)
Q Consensus 105 ~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~l~~L~~----lL~~~-------------~~~~ 167 (375)
...+.++.+..+|.+.++.++..|+.++..++...+. .+ ...++.+++ ++..+ ++-.
T Consensus 184 --~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~--~~--~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~ 257 (621)
T 2vgl_A 184 --PMGDWTSRVVHLLNDQHLGVVTAATSLITTLAQKNPE--EF--KTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWL 257 (621)
T ss_dssp --CCCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCHH--HH--TTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHH
T ss_pred --CchhHHHHHHHHhCCCCccHHHHHHHHHHHHHHhChH--HH--HHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchH
Confidence 1258899999999999999999999999999875431 11 123444444 33322 4667
Q ss_pred HHHHHHHHHHhccCC--CCchhhhhcCCcHHHHHHhhh---------cccchHHHHHHHHHHHHhhCChhhhHHHhhccC
Q 017249 168 RVDAVTALHYLSTCK--ENSSPILDATAVPPLINLLKD---------CKKYSKFAEKATALLEILSSSEEGRIAITNSDG 236 (375)
Q Consensus 168 ~~~a~~~L~~L~~~~--~~~~~i~~~g~i~~Lv~ll~~---------~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g 236 (375)
+...+..|..++..+ +....+.+ .++.++..+.+ .+....+.-.|..++..+...++... .
T Consensus 258 qi~il~ll~~~~~~~d~~~~~~l~~--~L~~il~~~~~~~ks~~l~~~n~~~aVl~ea~~~i~~l~~~~~~~~------~ 329 (621)
T 2vgl_A 258 SVKLLRLLQCYPPPEDPAVRGRLTE--CLETILNKAQEPPKSKKVQHSNAKNAVLFEAISLIIHHDSEPNLLV------R 329 (621)
T ss_dssp HHHHHHHGGGSSSCSSHHHHHHHHH--HHHHHHHHHHSCCSCSSHHHHHHHHHHHHHHHHHHHHHCCCHHHHH------H
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHH--HHHHHHHhhccCcccccccccchHHHHHHHHHHHHHhcCCcHHHHH------H
Confidence 778888877776432 11222211 22333322211 11111455567777777764443222 3
Q ss_pred cHHHHHHHhccCChHHHHHHHHHHHHhcccCcHHHHHHHHHcCChHHHHHHhh-hCCHHHHHHHHHHHHHhhcCChhhhh
Q 017249 237 GILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTV-EGTFEAQERARTLLDLLRDTPQEKRL 315 (375)
Q Consensus 237 ~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~g~v~~L~~ll~-~~~~~~~~~A~~~L~~l~~~~~~~~~ 315 (375)
++..|..+|.+.++.++..|+..|..++...+ . ...+ ......++..+. +.|+.++..|..+|..++....
T Consensus 330 ~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~-~-~~~~--~~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~~~N---- 401 (621)
T 2vgl_A 330 ACNQLGQFLQHRETNLRYLALESMCTLASSEF-S-HEAV--KTHIETVINALKTERDVSVRQRAVDLLYAMCDRSN---- 401 (621)
T ss_dssp HHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTT-T-HHHH--HTTHHHHHHHHTTCCCHHHHHHHHHHHHHHCCHHH----
T ss_pred HHHHHHHHhcCCCcchHHHHHHHHHHHHhccC-c-HHHH--HHHHHHHHHHhccCCCHhHHHHHHHHHHHHcChhh----
Confidence 56678888888889999999999999987652 1 1122 234667777777 8899999999999988876542
Q ss_pred hhhhHHHHHHHHh
Q 017249 316 SSSVLEKIVYDIA 328 (375)
Q Consensus 316 ~~g~~~~l~~~l~ 328 (375)
-..++..|...+.
T Consensus 402 v~~Iv~eL~~yl~ 414 (621)
T 2vgl_A 402 AQQIVAEMLSYLE 414 (621)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 1224445555553
No 68
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=98.67 E-value=1.7e-06 Score=80.85 Aligned_cols=279 Identities=12% Similarity=0.072 Sum_probs=187.1
Q ss_pred HhHHHHHHHHhc-CCCHHHHHHHHHHHHHHHhhCCh---hhHHHHHhcCC-hHHHHH-hhCCCCHHHHHHHHHHHHHhhc
Q 017249 24 QALIEELSDKLI-NGDLETKIEAARDIRKVVKKSSL---KTRSEFAAAGV-VQPLVL-MLVSPNLDAIESSLLALLNLAV 97 (375)
Q Consensus 24 ~~~l~~Lv~~L~-s~~~~~~~~a~~~l~~l~~~~~~---~~~~~~~~~g~-v~~Lv~-~L~~~~~~~~~~a~~~L~~L~~ 97 (375)
...+..++.+|+ ..+.++....+..+..+...+ + .....+.+..- ...+.. ++..+++-....+..++..++.
T Consensus 76 ~~~~~~~l~lL~~~~~~d~vqYvL~Li~DlL~~~-~~~~~~~~~f~~~~~~~~~l~~~~~~~dd~~~ll~a~~l~~ll~~ 154 (480)
T 1ho8_A 76 GKTLIPLIHLLSTSDNEDCKKSVQNLIAELLSSD-KYGDDTVKFFQEDPKQLEQLFDVSLKGDFQTVLISGFNVVSLLVQ 154 (480)
T ss_dssp STTHHHHHHHHHSCCCHHHHHHHHHHHHHHHHCS-SSSHHHHHHHHHCTTHHHHHHHHCSCSSHHHHHHHHHHHHHHHTS
T ss_pred chHHHHHHHHHhhcChHHHHHHHHHHHHHHHhcC-cchHHHHHHHhhCcccchHHHHHHhcccchHHHHHHHHHHHHHhc
Confidence 456678889887 678888889999999999887 4 44444454432 222333 4445556666777777777654
Q ss_pred cChhhHHHHHHcCChH--HHHHhhcCC-ChHHHHHHHHHHHHhhccCCChhHHHhc--CChHHHHHHhcc----------
Q 017249 98 RNERNKVKIATAGAIP--PLVELLKFQ-NGTLRELAAAAILTLSAAAPNKPAIAAS--GAAPLLVQILHS---------- 162 (375)
Q Consensus 98 ~~~~~r~~i~~~g~i~--~Lv~lL~~~-~~~~~~~a~~~L~~Ls~~~~~~~~i~~~--~~l~~L~~lL~~---------- 162 (375)
..+.....+. ..+. .++..|.+. +.+.+..++.+|..|...++.|..+... ..++.++.++..
T Consensus 155 ~~~~~~~~l~--~l~~~~~~~~~L~~~~~~~~~~i~v~~L~~Ll~~~~~R~~f~~~~~~~~~~l~~il~~~~~~~~~~~~ 232 (480)
T 1ho8_A 155 NGLHNVKLVE--KLLKNNNLINILQNIEQMDTCYVCIRLLQELAVIPEYRDVIWLHEKKFMPTLFKILQRATDSQLATRI 232 (480)
T ss_dssp TTTCCHHHHH--HHHHCHHHHHHHHCTTCHHHHHHHHHHHHHHHTSHHHHHHHHTTHHHHHHHHHHHHHHHHC-------
T ss_pred cCCccHhHHH--HHhhhHHHHHHhccccCCchHHHHHHHHHHHhcchhHHHHHHHcccchhHHHHHHHHHhhcccccccc
Confidence 3322111111 1122 455666653 4566778999999999888888887643 246666654431
Q ss_pred -----C--CHHHHHHHHHHHHHhccCCCCchhhhhcCCc--HHHHHHhhhcccchHHHHHHHHHHHHhhCCh-----hhh
Q 017249 163 -----G--SVQGRVDAVTALHYLSTCKENSSPILDATAV--PPLINLLKDCKKYSKFAEKATALLEILSSSE-----EGR 228 (375)
Q Consensus 163 -----~--~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i--~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~~~-----~~~ 228 (375)
+ ...+++.++.++|-|+..++....+...+.. +.|+.+++... .+++.+-++.+|.|+.... ...
T Consensus 233 ~~~~~~~~~~Ql~Y~~ll~iWlLSF~~~~~~~l~~~~i~~~~~L~~i~k~s~-KEKvvRv~la~l~Nll~~~~~~~~~~~ 311 (480)
T 1ho8_A 233 VATNSNHLGIQLQYHSLLLIWLLTFNPVFANELVQKYLSDFLDLLKLVKITI-KEKVSRLCISIILQCCSTRVKQHKKVI 311 (480)
T ss_dssp ------CCHHHHHHHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHHHHCC-SHHHHHHHHHHHHHTTSSSSTTHHHHH
T ss_pred ccccCCCccHHHHHHHHHHHHHHHcCHHHHHHHHhcchHHHHHHHHHHHhhc-cchhHHHHHHHHHHHhcccchhhhhHH
Confidence 1 2456899999999999988777777665543 56777777754 4567777888888887643 111
Q ss_pred H-HHh---------------------------------------------------------------------------
Q 017249 229 I-AIT--------------------------------------------------------------------------- 232 (375)
Q Consensus 229 ~-~~~--------------------------------------------------------------------------- 232 (375)
. .++
T Consensus 312 ~~~~~~~~~l~~l~~L~~rk~~Dedl~edl~~L~e~L~~~~~~ltsfDeY~~El~sG~L~WSP~H~se~FW~ENa~kf~e 391 (480)
T 1ho8_A 312 KQLLLLGNALPTVQSLSERKYSDEELRQDISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFKK 391 (480)
T ss_dssp HHHHHHHCHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGSS
T ss_pred HHHHHHccchHHHHHHhhCCCCcHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhcCCcccCCCccchhHHHHHHHHHHh
Confidence 1 111
Q ss_pred hccCcHHHHHHHhcc----------CChHHHHHHHHHHHHhcccCcHHHHHHHHHcCChHHHHHHhhhCCHHHHHHHHHH
Q 017249 233 NSDGGILTLVETVED----------GSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTL 302 (375)
Q Consensus 233 ~~~g~v~~Lv~lL~~----------~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~~~~~A~~~ 302 (375)
.+...+..|+.+|++ .++.+..-||.=|+.++.+. |+.+..+-+.|+=+.+++++.+.|+++|.+|..+
T Consensus 392 ~~~~llk~L~~iL~~~~~~~~~~~s~d~~~laVAc~Digefvr~~-P~gr~i~~~lg~K~~VM~Lm~h~d~~Vr~~AL~a 470 (480)
T 1ho8_A 392 DNYKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELL-PESIDVLDKTGGKADIMELLNHSDSRVKYEALKA 470 (480)
T ss_dssp GGGHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHC-TTHHHHHHHHSHHHHHHHHTSCSSHHHHHHHHHH
T ss_pred cchHHHHHHHHHHhhhccccccccCCCcceEEeecccHHHHHHHC-cchhHHHHHcCcHHHHHHHhcCCCHHHHHHHHHH
Confidence 122345677777763 24666777888888888887 5778877788999999999999999999999998
Q ss_pred HHHhh
Q 017249 303 LDLLR 307 (375)
Q Consensus 303 L~~l~ 307 (375)
+..+-
T Consensus 471 vQklm 475 (480)
T 1ho8_A 471 TQAII 475 (480)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87653
No 69
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=98.65 E-value=1.2e-06 Score=73.56 Aligned_cols=223 Identities=13% Similarity=0.070 Sum_probs=159.8
Q ss_pred CChHHHHHhhCCCCHHHHHHHHHHHHHhhccChhhHHHHHHcCChHHHHHhhcCCChHHHHHHHHHHHHhhccCC-ChhH
Q 017249 68 GVVQPLVLMLVSPNLDAIESSLLALLNLAVRNERNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAP-NKPA 146 (375)
Q Consensus 68 g~v~~Lv~~L~~~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~-~~~~ 146 (375)
+.+..|..+|.+.|+.++..++.+|..+.++-+..-....-...++.++.++++.+..+...|+.||..|..+.+ ....
T Consensus 33 ~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~~ 112 (265)
T 3b2a_A 33 RALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSKT 112 (265)
T ss_dssp HHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHHH
T ss_pred hHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHHH
Confidence 357889999999999999999999999998643333333344579999999999999999999999999988755 3333
Q ss_pred HHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCCCCchhhhhcCCcHHHHHHhhhcccchHHHHHHHHHHHHhhCChh
Q 017249 147 IAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEE 226 (375)
Q Consensus 147 i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~~~~ 226 (375)
+. ....+|.+++.++++-.+.+++..+..|..... ..+++..+.+++.+. +..++..++++|.+++....
T Consensus 113 y~--Kl~~aL~dlik~~~~il~~eaae~Lgklkv~~~------~~~V~~~l~sLl~Sk--d~~vK~agl~~L~eia~~S~ 182 (265)
T 3b2a_A 113 FL--KAAKTLVSLLESPDDMMRIETIDVLSKLQPLED------SKLVRTYINELVVSP--DLYTKVAGFCLFLNMLNSSA 182 (265)
T ss_dssp HH--HHHHHHHHHTTSCCHHHHHHHHHHHHHCCBSCC------CHHHHHHHHHHHTCS--SHHHHHHHHHHHHHHGGGCS
T ss_pred HH--HHHHHHHHHhcCCCchHHHHHHHHhCcCCcccc------hHHHHHHHHHHHhCC--ChhHHHHHHHHHHHhhcccC
Confidence 32 346788999999999999999999998821111 123566788888433 66889999999999987543
Q ss_pred hhHHHhhccCcHHHHHHHhccCChHHHHHHHHHHHHhcccCcHHHHHHHHHcCChHHHHH-Hh-hhCCHHHHHHHHHHHH
Q 017249 227 GRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLR-LT-VEGTFEAQERARTLLD 304 (375)
Q Consensus 227 ~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~g~v~~L~~-ll-~~~~~~~~~~A~~~L~ 304 (375)
....+ .+.+..+-.+|.+.++.+++.|+.++..+....-. ...+.+--.+...+. +. ..|.|..+..|-.+-.
T Consensus 183 D~~i~---~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~pi~--~~~~~~~~~~~~~v~~l~~~~~~~~~~~ka~~v~~ 257 (265)
T 3b2a_A 183 DSGHL---TLILDEIPSLLQNDNEFIVELALDVLEKALSFPLL--ENVKIELLKISRIVDGLVYREGAPIIRLKAKKVSD 257 (265)
T ss_dssp SCCCG---GGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSCCC--SCCHHHHHHHHHHHHHGGGCSSCHHHHHHHHHHHH
T ss_pred CHHHH---HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCccc--HhHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHH
Confidence 32221 24555677788889999999999999999876421 111111112222232 33 4678888888866544
Q ss_pred H
Q 017249 305 L 305 (375)
Q Consensus 305 ~ 305 (375)
.
T Consensus 258 ~ 258 (265)
T 3b2a_A 258 L 258 (265)
T ss_dssp H
T ss_pred H
Confidence 3
No 70
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=98.56 E-value=4.8e-09 Score=82.35 Aligned_cols=123 Identities=15% Similarity=0.206 Sum_probs=93.4
Q ss_pred hhHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhccChh
Q 017249 22 RKQALIEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIESSLLALLNLAVRNER 101 (375)
Q Consensus 22 ~~~~~l~~Lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~~~~~~~~~a~~~L~~L~~~~~~ 101 (375)
.....++.++..|+++++.++..|++.|..+... .++.|+++|+++++.++..|+++|+++.. +
T Consensus 9 ~~~~~~~~l~~~L~~~~~~vR~~A~~~L~~~~~~-------------~~~~L~~~L~d~~~~vR~~A~~aL~~~~~--~- 72 (131)
T 1te4_A 9 HHSSGLVPRGSHMADENKWVRRDVSTALSRMGDE-------------AFEPLLESLSNEDWRIRGAAAWIIGNFQD--E- 72 (131)
T ss_dssp ------------CCSSCCCSSSSCCSSTTSCSST-------------THHHHHHGGGCSCHHHHHHHHHHHGGGCS--H-
T ss_pred cccccHHHHHHHhcCCCHHHHHHHHHHHHHhCch-------------HHHHHHHHHcCCCHHHHHHHHHHHHhcCC--H-
Confidence 3456678899999999999999999888765211 26899999999999999999999999863 1
Q ss_pred hHHHHHHcCChHHHHHhhcCCChHHHHHHHHHHHHhhccCCChhHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHh
Q 017249 102 NKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYL 178 (375)
Q Consensus 102 ~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~~L 178 (375)
..++.|+.+|+++++.+|..|+++|.++. ....++.|..++++++..++..|+.+|..+
T Consensus 73 --------~a~~~L~~~L~d~~~~VR~~A~~aL~~~~----------~~~a~~~L~~~l~d~~~~vr~~A~~aL~~i 131 (131)
T 1te4_A 73 --------RAVEPLIKLLEDDSGFVRSGAARSLEQIG----------GERVRAAMEKLAETGTGFARKVAVNYLETH 131 (131)
T ss_dssp --------HHHHHHHHHHHHCCTHHHHHHHHHHHHHC----------SHHHHHHHHHHTTSCCTHHHHHHHHHGGGC
T ss_pred --------HHHHHHHHHHcCCCHHHHHHHHHHHHHhC----------cHHHHHHHHHHHhCCCHHHHHHHHHHHHhC
Confidence 24789999999999999999999999884 235688999999999999999999887653
No 71
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=98.55 E-value=3.6e-07 Score=79.54 Aligned_cols=183 Identities=15% Similarity=0.152 Sum_probs=135.4
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHhhCChhhH-HHHHhcCChHHHHHhhC-CCCHHHHHHHHHHHHHhhccChhhHHH
Q 017249 28 EELSDKLINGDLETKIEAARDIRKVVKKSSLKTR-SEFAAAGVVQPLVLMLV-SPNLDAIESSLLALLNLAVRNERNKVK 105 (375)
Q Consensus 28 ~~Lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~-~~~~~~g~v~~Lv~~L~-~~~~~~~~~a~~~L~~L~~~~~~~r~~ 105 (375)
+.+.+.+.+.++..+..|+..|..+.... +... ..+ ..+++.|...+. +.+..++..|+.+|..|+..-...-.
T Consensus 18 ~~l~~~l~s~~w~~R~~a~~~L~~l~~~~-~~~~~~~~--~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~- 93 (242)
T 2qk2_A 18 KDFYDKLEEKKWTLRKESLEVLEKLLTDH-PKLENGEY--GALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFS- 93 (242)
T ss_dssp TTHHHHHTCSSHHHHHHHHHHHHHHHHHC-SSBCCCCC--HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGH-
T ss_pred HHHHhhhccCCHHHHHHHHHHHHHHHccC-CCCCCCCH--HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHH-
Confidence 35788889999999999999999999873 1110 000 134677888884 89999999999999999963221111
Q ss_pred HHHcCChHHHHHhhcCCChHHHHHHHHHHHHhhccCCChhHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccC--CC
Q 017249 106 IATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTC--KE 183 (375)
Q Consensus 106 i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~~L~~~--~~ 183 (375)
-+-...+|.|+..+.+.++.+|..+..+|.++...... ...++.+...|++.++.++..++..|..+... ++
T Consensus 94 ~~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~~------~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~ 167 (242)
T 2qk2_A 94 NYASACVPSLLEKFKEKKPNVVTALREAIDAIYASTSL------EAQQESIVESLSNKNPSVKSETALFIARALTRTQPT 167 (242)
T ss_dssp HHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSCH------HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGG
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCCH------HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCC
Confidence 12234689999999999999999999999999775431 23578888999999999999999999996543 22
Q ss_pred -CchhhhhcCCcHHHHHHhhhcccchHHHHHHHHHHHHhhC
Q 017249 184 -NSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSS 223 (375)
Q Consensus 184 -~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~ 223 (375)
...... ...++.|+.++.+. ...++..|..++..++.
T Consensus 168 ~~~~~~l-~~l~p~l~~~l~D~--~~~VR~~A~~~l~~l~~ 205 (242)
T 2qk2_A 168 ALNKKLL-KLLTTSLVKTLNEP--DPTVRDSSAEALGTLIK 205 (242)
T ss_dssp GCCHHHH-HHHHHHHHHHHTSS--CHHHHHHHHHHHHHHHH
T ss_pred CccHHHH-HHHHHHHHHHhcCC--ChHHHHHHHHHHHHHHH
Confidence 111112 35788888888765 45788889999988774
No 72
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=98.54 E-value=1.9e-06 Score=78.70 Aligned_cols=250 Identities=10% Similarity=-0.008 Sum_probs=154.3
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhccChhhHHH
Q 017249 26 LIEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIESSLLALLNLAVRNERNKVK 105 (375)
Q Consensus 26 ~l~~Lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~~~~~~~~~a~~~L~~L~~~~~~~r~~ 105 (375)
.+..++++++++|.+.|+-.--.+..++... ++.. + ++..|.+-+.++++-++-.|+++|+++.. ++.-..
T Consensus 69 lf~~v~kl~~s~d~~lKrLvYLyl~~~~~~~-~e~i--L----v~Nsl~kDl~~~N~~iR~lALRtL~~I~~--~~m~~~ 139 (355)
T 3tjz_B 69 AFFAMTKLFQSNDPTLRRMCYLTIKEMSCIA-EDVI--I----VTSSLTKDMTGKEDSYRGPAVRALCQITD--STMLQA 139 (355)
T ss_dssp HHHHHHGGGGCCCHHHHHHHHHHHHHHTTTS-SCGG--G----GHHHHHHHHHSSCHHHHHHHHHHHHHHCC--TTTHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhCCCH-HHHH--H----HHHHHHhhcCCCcHhHHHHHHHHHhcCCC--HHHHHH
Confidence 3444555666777777776666666666554 2221 1 36677788889999999999999999985 334333
Q ss_pred HHHcCChHHHHHhhcCCChHHHHHHHHHHHHhhccCCChhHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCCCCc
Q 017249 106 IATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTCKENS 185 (375)
Q Consensus 106 i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~~L~~~~~~~ 185 (375)
+ .+.+.+.|.+.++.++..|+-+...|.... ...+ .++++.+-+++.+.++-++.+|+.+|..+...+.
T Consensus 140 l-----~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~--pe~v--~~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~d~-- 208 (355)
T 3tjz_B 140 I-----ERYMKQAIVDKVPSVSSSALVSSLHLLKCS--FDVV--KRWVNEAQEAASSDNIMVQYHALGLLYHVRKNDR-- 208 (355)
T ss_dssp H-----HHHHHHHHTCSSHHHHHHHHHHHHHHTTTC--HHHH--HTTHHHHHHHTTCSSHHHHHHHHHHHHHHHTTCH--
T ss_pred H-----HHHHHHHcCCCCHHHHHHHHHHHHHHhccC--HHHH--HHHHHHHHHHhcCCCccHHHHHHHHHHHHHhhch--
Confidence 3 457888889999999999999999886543 2332 3689999999999999999999999999976431
Q ss_pred hhhhhcCCcHHHHHHhhhccc-chHHHHHHHHHHHHhhCC-hhhhHHHhhccCcHHHHHHHhccCChHHHHHHHHHHHHh
Q 017249 186 SPILDATAVPPLINLLKDCKK-YSKFAEKATALLEILSSS-EEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSL 263 (375)
Q Consensus 186 ~~i~~~g~i~~Lv~ll~~~~~-~~~~~~~a~~~L~~l~~~-~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l 263 (375)
..+..|+.-+..+.. ++-. -+.+|..+... +.+-.. . ....++.|.+.|++.++.+.-+|+.++..+
T Consensus 209 ------~a~~kLv~~l~~~~l~~~~~---q~~llr~l~~~~~~d~~~-~-~~~~~~~l~~~L~~~~~aVvyEa~k~I~~l 277 (355)
T 3tjz_B 209 ------LAVSKMISKFTRHGLKSPFA---YCMMIRVASRQLEDEDGS-R-DSPLFDFIESCLRNKHEMVVYEAASAIVNL 277 (355)
T ss_dssp ------HHHHHHHHHHHSSCCSCHHH---HHHHHHHHTCC-------------------CCCCCSSHHHHHHHHHHHTC-
T ss_pred ------HHHHHHHHHHhcCCCcChHH---HHHHHHHHHHhccccchh-h-HHHHHHHHHHHHcCCChHHHHHHHHHHHhc
Confidence 133445555444311 1111 23344433321 111001 1 235667788888899999999999999998
Q ss_pred cccCcHHHHHHHHHcCChHHHHHHhhhCCHHHHHHHHHHHHHhhcCChh
Q 017249 264 CQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDTPQE 312 (375)
Q Consensus 264 ~~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~~ 312 (375)
.... .. .-..++..|..++.+.++.+|..|...|..+....|.
T Consensus 278 ~~~~-~~-----~~~~a~~~L~~fLss~d~niryvaLr~L~~l~~~~P~ 320 (355)
T 3tjz_B 278 PGCS-AK-----ELAPAVSVLQLFCSSPKAALRYAAVRTLNKVAMKHPS 320 (355)
T ss_dssp ----------------CCCTHHHHHHSSSSSSHHHHHHCC---------
T ss_pred cCCC-HH-----HHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHCcH
Confidence 6532 11 1144567788888899999999999988888877664
No 73
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=98.51 E-value=4e-07 Score=79.24 Aligned_cols=185 Identities=12% Similarity=0.104 Sum_probs=136.0
Q ss_pred HHHHHhhcCCChHHHHHHHHHHHHhhcc-CCChhHHHhcCChHHHHHHhc-cCCHHHHHHHHHHHHHhccCC-CCchhhh
Q 017249 113 PPLVELLKFQNGTLRELAAAAILTLSAA-APNKPAIAASGAAPLLVQILH-SGSVQGRVDAVTALHYLSTCK-ENSSPIL 189 (375)
Q Consensus 113 ~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~-~~~~~~i~~~~~l~~L~~lL~-~~~~~~~~~a~~~L~~L~~~~-~~~~~i~ 189 (375)
+.+.+.+.+.+-..|..++..|..+... +..... .-...++.|...+. +.+..++..|+.+|..|+..- ..... .
T Consensus 18 ~~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~-~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~-~ 95 (242)
T 2qk2_A 18 KDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENG-EYGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSN-Y 95 (242)
T ss_dssp TTHHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCC-CCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHH-H
T ss_pred HHHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCC-CHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHH-H
Confidence 3477888888999999999999998875 221100 01245777888884 889999999999999998542 11111 1
Q ss_pred hcCCcHHHHHHhhhcccchHHHHHHHHHHHHhhCChhhhHHHhhccCcHHHHHHHhccCChHHHHHHHHHHHHhcccCcH
Q 017249 190 DATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRD 269 (375)
Q Consensus 190 ~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~ 269 (375)
-...++.++..+.+. ...++..+..+|.+++.... + ...++.+...|.+.++.++..++..|..+.....+
T Consensus 96 ~~~ilp~ll~~l~d~--~~~vr~~a~~aL~~~~~~~~-----~--~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~ 166 (242)
T 2qk2_A 96 ASACVPSLLEKFKEK--KPNVVTALREAIDAIYASTS-----L--EAQQESIVESLSNKNPSVKSETALFIARALTRTQP 166 (242)
T ss_dssp HHHHHHHHHHGGGCC--CHHHHHHHHHHHHHHHTTSC-----H--HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCG
T ss_pred HHHHHHHHHHHHcCC--CHHHHHHHHHHHHHHHHcCC-----H--HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCC
Confidence 134788888888775 45788999999998876432 1 23677788889998999999999999996554322
Q ss_pred H--HHHHHHHcCChHHHHHHhhhCCHHHHHHHHHHHHHhhcCC
Q 017249 270 K--YRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDTP 310 (375)
Q Consensus 270 ~--~~~~l~~~g~v~~L~~ll~~~~~~~~~~A~~~L~~l~~~~ 310 (375)
+ ....+ ..+++.|+.++.+.++.+|..|..++..+...-
T Consensus 167 ~~~~~~~l--~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~v 207 (242)
T 2qk2_A 167 TALNKKLL--KLLTTSLVKTLNEPDPTVRDSSAEALGTLIKLM 207 (242)
T ss_dssp GGCCHHHH--HHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHH
T ss_pred CCccHHHH--HHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHc
Confidence 2 12222 368899999999999999999999999987655
No 74
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=98.44 E-value=3.8e-06 Score=86.06 Aligned_cols=303 Identities=14% Similarity=0.169 Sum_probs=207.4
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhccCh---hh
Q 017249 26 LIEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIESSLLALLNLAVRNE---RN 102 (375)
Q Consensus 26 ~l~~Lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~~~~~~~~~a~~~L~~L~~~~~---~~ 102 (375)
.+..++..+...+...+..++..+..+..+. .... .+..+++..|.+.+.+.... +.|+.++..|+.... ..
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~~~ 89 (986)
T 2iw3_A 15 VLEELFQKLSVATADNRHEIASEVASFLNGN-IIEH--DVPEHFFGELAKGIKDKKTA--ANAMQAVAHIANQSNLSPSV 89 (986)
T ss_dssp HHHHHHHHHTTCCTTTHHHHHHHHHHHHTSS-CSSS--SCCHHHHHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCTTT
T ss_pred HHHHHHhhccccchhHHHHHHHHHHHHHhcc-cccc--ccchhHHHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCCCc
Confidence 3445666676555666677888888877644 1111 11135677888888775433 999999999995332 22
Q ss_pred HHHHHHcCChHHHHHhhcCCChHHHHHHHHHHHHhhccCCChhHHHhcCChHHHHHHhccC-CHHHHHHHHHHHHHhccC
Q 017249 103 KVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHSG-SVQGRVDAVTALHYLSTC 181 (375)
Q Consensus 103 r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~l~~L~~lL~~~-~~~~~~~a~~~L~~L~~~ 181 (375)
-..++ +.+|.++..+.+....++..|..++..+...-.. ..+ ...+|.|+..|.+. .-..+..|+.++..|+..
T Consensus 90 e~~~~--~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~-~a~--~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~ 164 (986)
T 2iw3_A 90 EPYIV--QLVPAICTNAGNKDKEIQSVASETLISIVNAVNP-VAI--KALLPHLTNAIVETNKWQEKIAILAAFSAMVDA 164 (986)
T ss_dssp HHHHH--TTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCG-GGH--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_pred ccchH--HHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCH-HHH--HHHHHHHHHHhccccchHHHHHHHHHHHHHHHH
Confidence 22222 5788888888888889998888888777654221 111 45688899988766 478899999999999864
Q ss_pred CCCchhhh--hcCCcHHHHHHhhhcccchHHHHHHHHHHHHhhCChhhhHHHhhccCcHHHHHHHhccCChHHHHHHHHH
Q 017249 182 KENSSPIL--DATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGA 259 (375)
Q Consensus 182 ~~~~~~i~--~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~ 259 (375)
.. ..+. -...+|.+...+.+. .+.+...|..++..+|..-.|+.. ...+|.|+..+.+++. ...++..
T Consensus 165 ~~--~~~~~~~~~~~p~~~~~~~d~--k~~v~~~~~~~~~~~~~~~~n~d~----~~~~~~~~~~~~~p~~--~~~~~~~ 234 (986)
T 2iw3_A 165 AK--DQVALRMPELIPVLSETMWDT--KKEVKAAATAAMTKATETVDNKDI----ERFIPSLIQCIADPTE--VPETVHL 234 (986)
T ss_dssp SH--HHHHHHHHHHHHHHHHHTTCS--SHHHHHHHHHHHHHHGGGCCCTTT----GGGHHHHHHHHHCTTH--HHHHHHH
T ss_pred hH--HHHHHhccchhcchHhhcccC--cHHHHHHHHHHHHHHHhcCCCcch----hhhHHHHHHHhcChhh--hHHHHHH
Confidence 32 3332 246788888888776 346888899999988876666542 4689999999988754 4556666
Q ss_pred HHHhcccCcHHHHHHHHHcCChHHHHHHhhhCCHHHHHHHHHHHHHhhcCChhhhhhhhhHHHHHHHHhh--cCCChHHH
Q 017249 260 LLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDTPQEKRLSSSVLEKIVYDIAA--RVDGADKA 337 (375)
Q Consensus 260 L~~l~~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~~~~~~~g~~~~l~~~l~~--~~~g~~~~ 337 (375)
|..-..-..-+ ...+ .=.+|.|.+-+...+..++++++-+..|+|+-........-++|.|+..+.. ..-..|++
T Consensus 235 l~~~tfv~~v~-~~~l--~~~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv~~~~~~~~f~~~l~p~~~~~~~~~~~pe~ 311 (986)
T 2iw3_A 235 LGATTFVAEVT-PATL--SIMVPLLSRGLNERETGIKRKSAVIIDNMCKLVEDPQVIAPFLGKLLPGLKSNFATIADPEA 311 (986)
T ss_dssp HTTCCCCSCCC-HHHH--HHHHHHHHHHHTSSSHHHHHHHHHHHHHHHTTCCCHHHHHHHHTTTHHHHHHHTTTCCSHHH
T ss_pred hhcCeeEeeec-chhH--HHHHHHHHhhhccCcchhheeeEEEEcchhhhcCCHHHHhhhhhhhhhHHHHHhhccCCHHH
Confidence 65544432100 0001 1246777778888899999999999999999886666666677777666653 23345999
Q ss_pred HHHHHHHHHHHHHH
Q 017249 338 AETAKRLLQDMVQR 351 (375)
Q Consensus 338 ~~~a~~~l~~l~~~ 351 (375)
++.|.++++.|.+.
T Consensus 312 r~~~~~a~~~l~~~ 325 (986)
T 2iw3_A 312 REVTLRALKTLRRV 325 (986)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999999765
No 75
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=98.30 E-value=0.00023 Score=72.38 Aligned_cols=256 Identities=14% Similarity=0.061 Sum_probs=169.7
Q ss_pred HHHHHHHHhcCCC--------HHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhc
Q 017249 26 LIEELSDKLINGD--------LETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIESSLLALLNLAV 97 (375)
Q Consensus 26 ~l~~Lv~~L~s~~--------~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~~~~~~~~~a~~~L~~L~~ 97 (375)
.+..|...|.+++ +.++.-|+..|.-...+. .+. .+++.|.+.|.+++..++..|+.+|+.+-.
T Consensus 430 ~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS--~~e------ev~e~L~~~L~dd~~~~~~~AalALGli~v 501 (963)
T 4ady_A 430 TTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGS--ANI------EVYEALKEVLYNDSATSGEAAALGMGLCML 501 (963)
T ss_dssp HHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTC--CCH------HHHHHHHHHHHTCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCC--CCH------HHHHHHHHHHhcCCHHHHHHHHHHHhhhhc
Confidence 4566666676444 556667777777765544 111 246778888888877777888888887743
Q ss_pred cChhhHHHHHHcCChHHHHHhh-cCCChHHHHHHHHHHHHhhccCCChhHHHhcCChHHHHHHhcc-CCHHHHHHHHHHH
Q 017249 98 RNERNKVKIATAGAIPPLVELL-KFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHS-GSVQGRVDAVTAL 175 (375)
Q Consensus 98 ~~~~~r~~i~~~g~i~~Lv~lL-~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~l~~L~~lL~~-~~~~~~~~a~~~L 175 (375)
++. +.. ++..|+..+ +..+..++..++..|..+... ....++.+++.|.. .++-++..++.++
T Consensus 502 GTg-n~~------ai~~LL~~~~e~~~e~vrR~aalgLGll~~g--------~~e~~~~li~~L~~~~dp~vRygaa~al 566 (963)
T 4ady_A 502 GTG-KPE------AIHDMFTYSQETQHGNITRGLAVGLALINYG--------RQELADDLITKMLASDESLLRYGGAFTI 566 (963)
T ss_dssp TCC-CHH------HHHHHHHHHHHCSCHHHHHHHHHHHHHHTTT--------CGGGGHHHHHHHHHCSCHHHHHHHHHHH
T ss_pred ccC-CHH------HHHHHHHHHhccCcHHHHHHHHHHHHhhhCC--------ChHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 322 111 234555543 445788888888888887542 34567888888764 5777788877776
Q ss_pred HHhccCCCCchhhhhcCCcHHHHHHhhhcccchHHHHHHHHHHHHhhCChhhhHHHhhccCcHHHHHHHh-ccCChHHHH
Q 017249 176 HYLSTCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETV-EDGSLVSTQ 254 (375)
Q Consensus 176 ~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~Lv~lL-~~~~~~~~~ 254 (375)
.--..+..+. ..++.|+..+.++. ...++..|.-.|+.+..... ..++.++.+| .+.++.+|.
T Consensus 567 glAyaGTGn~------~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~---------e~v~rlv~~L~~~~d~~VR~ 630 (963)
T 4ady_A 567 ALAYAGTGNN------SAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDY---------TTVPRIVQLLSKSHNAHVRC 630 (963)
T ss_dssp HHHTTTSCCH------HHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSC---------SSHHHHTTTGGGCSCHHHHH
T ss_pred HHHhcCCCCH------HHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCH---------HHHHHHHHHHHhcCCHHHHH
Confidence 6433333332 24566777776654 45678888888887765432 3566777655 568899999
Q ss_pred HHHHHHHHhcccCcHHHHHHHHHcCChHHHHHHhhhCCHHHHHHHHHHHHHhhcCChhhh--hhhhhHHHHHHHHh
Q 017249 255 HAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDTPQEKR--LSSSVLEKIVYDIA 328 (375)
Q Consensus 255 ~a~~~L~~l~~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~~~~--~~~g~~~~l~~~l~ 328 (375)
.|+.+|+.++.+.+. ..++..|..+.++.++.|+..|+.+|..+.-...+.. .-.++...|.....
T Consensus 631 gAalALGli~aGn~~--------~~aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig~gtnna~~~rva~~l~~L~~~~~ 698 (963)
T 4ady_A 631 GTAFALGIACAGKGL--------QSAIDVLDPLTKDPVDFVRQAAMIALSMILIQQTEKLNPQVADINKNFLSVIT 698 (963)
T ss_dssp HHHHHHHHHTSSSCC--------HHHHHHHHHHHTCSSHHHHHHHHHHHHHHSTTCCTTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCc--------HHHHHHHHHHccCCCHHHHHHHHHHHHHHhcCCccccchHHHHHHHHHHHHHh
Confidence 999999999887631 2345677788899999999999999999976543211 12344555555443
No 76
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=98.30 E-value=0.0005 Score=55.54 Aligned_cols=217 Identities=16% Similarity=0.160 Sum_probs=160.4
Q ss_pred hhHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhh-CCCCHHHHHHHHHHHHHhhccCh
Q 017249 22 RKQALIEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLML-VSPNLDAIESSLLALLNLAVRNE 100 (375)
Q Consensus 22 ~~~~~l~~Lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L-~~~~~~~~~~a~~~L~~L~~~~~ 100 (375)
-+...+..++..|.++-|.++..|+..+..++..- ++..+.+ +..|+-++ +++.........++++.++...|
T Consensus 29 ~d~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~-~el~epl-----~~kL~vm~~ksEaIpltqeIa~a~G~la~i~P 102 (253)
T 2db0_A 29 YDESVLKKLIELLDDDLWTVVKNAISIIMVIAKTR-EDLYEPM-----LKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKP 102 (253)
T ss_dssp HCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTC-GGGHHHH-----HHHHHHHHHHCCSHHHHHHHHHHHHHHHHHCH
T ss_pred hhHHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHh-HHHHHHH-----HHHHHHHHhhcccCchHHHHHHHHhHHHHhCH
Confidence 45678999999999999999999999999999988 7766654 45666666 45566777788899999998776
Q ss_pred hhHHHHHHcCChHHHHHhhcCCChHHHHHHHHHHHHhhccCCChhHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhcc
Q 017249 101 RNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLST 180 (375)
Q Consensus 101 ~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~~L~~ 180 (375)
+.-..+ +|.+..=++-+++..+.+...+|-.++...+. .-.+.+.-+..++.+++..-+..|+..+..+..
T Consensus 103 e~v~~v-----Vp~lfanyrigd~kikIn~~yaLeeIaranP~----l~~~v~rdi~smltskd~~Dkl~aLnFi~alGe 173 (253)
T 2db0_A 103 ELVKSM-----IPVLFANYRIGDEKTKINVSYALEEIAKANPM----LMASIVRDFMSMLSSKNREDKLTALNFIEAMGE 173 (253)
T ss_dssp HHHHHH-----HHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHH----HHHHHHHHHHHHTSCSSHHHHHHHHHHHHTCCT
T ss_pred HHHHhh-----HHHHHHHHhcCCccceecHHHHHHHHHHhChH----HHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhc
Confidence 554433 66777777788999999999999998764331 123556778889999987767777777666543
Q ss_pred CCCCchhhhhcCCcHHHHHHhhhcccchHHHHHHHHHHHHhhCC-hhhhHHHhhccCcHHHHHHHhccCChHHHHHHHHH
Q 017249 181 CKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSS-EEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGA 259 (375)
Q Consensus 181 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~ 259 (375)
|....+ ...+|.|..+|.+. +..++..+...|.+++.. +.-|+ ++..-+.-+++.++.++......
T Consensus 174 ---n~~~yv-~PfLprL~aLL~D~--deiVRaSaVEtL~~lA~~npklRk-------ii~~kl~e~~D~S~lv~~~V~eg 240 (253)
T 2db0_A 174 ---NSFKYV-NPFLPRIINLLHDG--DEIVRASAVEALVHLATLNDKLRK-------VVIKRLEELNDTSSLVNKTVKEG 240 (253)
T ss_dssp ---TTHHHH-GGGHHHHHGGGGCS--SHHHHHHHHHHHHHHHTSCHHHHH-------HHHHHHHHCCCSCHHHHHHHHHH
T ss_pred ---cCcccc-CcchHHHHHHHcCc--chhhhHHHHHHHHHHHHcCHHHHH-------HHHHHHHHhcCcHHHHHHHHHHH
Confidence 333322 34788999999887 557888899999999974 44343 33345666778888888877777
Q ss_pred HHHhccc
Q 017249 260 LLSLCQS 266 (375)
Q Consensus 260 L~~l~~~ 266 (375)
|..+..-
T Consensus 241 L~rl~l~ 247 (253)
T 2db0_A 241 ISRLLLL 247 (253)
T ss_dssp HHHHHHC
T ss_pred HHHHHHH
Confidence 7766543
No 77
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=98.29 E-value=5e-06 Score=72.59 Aligned_cols=191 Identities=12% Similarity=0.055 Sum_probs=133.4
Q ss_pred HHHhhcCCChHHHHHHHHHHHH-hhccCC-ChhHHHh-cCChHHHHHHh-ccCCHHHHHHHHHHHHHhccC-C-CCch-h
Q 017249 115 LVELLKFQNGTLRELAAAAILT-LSAAAP-NKPAIAA-SGAAPLLVQIL-HSGSVQGRVDAVTALHYLSTC-K-ENSS-P 187 (375)
Q Consensus 115 Lv~lL~~~~~~~~~~a~~~L~~-Ls~~~~-~~~~i~~-~~~l~~L~~lL-~~~~~~~~~~a~~~L~~L~~~-~-~~~~-~ 187 (375)
+.+.+.+.+..-|..|+..|.. +..... ......+ ...+..|.+.+ ++.+..++..|+.+|..|+.. . +... .
T Consensus 21 f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~~ 100 (249)
T 2qk1_A 21 FQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKD 100 (249)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCHH
T ss_pred HHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccHH
Confidence 4566788888899999999999 875422 1100111 24477788888 788999999999999999853 2 2221 1
Q ss_pred hhhcCCcHHHHHHhhhcccchHHHHHHHHHHHHhhCCh-hhhHHH-hhccCcHHHHHHHhccCChHHHHHHHHHHHHhcc
Q 017249 188 ILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSE-EGRIAI-TNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQ 265 (375)
Q Consensus 188 i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~~~-~~~~~~-~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~ 265 (375)
. ...+++.++..+.+. ...+++.+..++..++..- .....- + ...++.|+..|.+.++.+++.++.+|..++.
T Consensus 101 y-~~~llp~ll~~l~dk--k~~V~~aa~~al~~i~~~~~~~~~~~~l--~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~ 175 (249)
T 2qk1_A 101 Y-VSLVFTPLLDRTKEK--KPSVIEAIRKALLTICKYYDPLASSGRN--EDMLKDILEHMKHKTPQIRMECTQLFNASMK 175 (249)
T ss_dssp H-HHHHHHHHHHGGGCC--CHHHHHHHHHHHHHHHHHSCTTCTTCTT--HHHHHHHHHHTTCSSHHHHHHHHHHHHHHHH
T ss_pred H-HHHHHHHHHHHHcCC--CHHHHHHHHHHHHHHHHHccccccCCcH--HHHHHHHHHHHcCCChHHHHHHHHHHHHHHH
Confidence 1 123678888888765 3467788888888777521 111100 1 1367788889998899999999999999887
Q ss_pred cCcH--HHHHHHHHcCChHHHHHHhhhCCHHHHHHHHHHHHHhhcCC
Q 017249 266 SCRD--KYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDTP 310 (375)
Q Consensus 266 ~~~~--~~~~~l~~~g~v~~L~~ll~~~~~~~~~~A~~~L~~l~~~~ 310 (375)
.... ..-...+...++|.|..++.+.++.+|..|..+|..++..-
T Consensus 176 ~~~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~v 222 (249)
T 2qk1_A 176 EEKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKIF 222 (249)
T ss_dssp HCCSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHH
T ss_pred HcCCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh
Confidence 6531 11112223678999999999999999999999999987544
No 78
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=98.28 E-value=1.5e-06 Score=75.91 Aligned_cols=190 Identities=13% Similarity=0.156 Sum_probs=134.2
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHH-HHhhCChhhHHHHHh-cCChHHHHHhh-CCCCHHHHHHHHHHHHHhhccCh--hhH
Q 017249 29 ELSDKLINGDLETKIEAARDIRK-VVKKSSLKTRSEFAA-AGVVQPLVLML-VSPNLDAIESSLLALLNLAVRNE--RNK 103 (375)
Q Consensus 29 ~Lv~~L~s~~~~~~~~a~~~l~~-l~~~~~~~~~~~~~~-~g~v~~Lv~~L-~~~~~~~~~~a~~~L~~L~~~~~--~~r 103 (375)
.+.+.+.+.++..+..|+..|.. ++.+. +.....-.+ ...++.|.+.+ ++.+..++..|+.+|+.++.+-. ...
T Consensus 20 ~f~~~l~s~~w~eRk~al~~L~~~~~~~~-~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~ 98 (249)
T 2qk1_A 20 DFQERITSSKWKDRVEALEEFWDSVLSQT-KKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFS 98 (249)
T ss_dssp THHHHHTCSSHHHHHHHHHHHHHHTGGGC-CCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSC
T ss_pred hHHHHhhcCCHHHHHHHHHHHHHHHHhcC-CccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhccccccc
Confidence 35667789999999999999999 87553 211100001 13477788888 78899999999999999996321 111
Q ss_pred HHHHHcCChHHHHHhhcCCChHHHHHHHHHHHHhhccCCC-hhHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCC
Q 017249 104 VKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPN-KPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTCK 182 (375)
Q Consensus 104 ~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~-~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~~L~~~~ 182 (375)
. -+..-.+|.++..+++..+.++..+..++..++...+. ...-.-...++.|+..|++.++.++..++.+|..+....
T Consensus 99 ~-~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~ 177 (249)
T 2qk1_A 99 K-DYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEE 177 (249)
T ss_dssp H-HHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHC
T ss_pred H-HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHc
Confidence 0 11123588999999998999999999999998875321 110001246778888999999999999999999888543
Q ss_pred CCc-hh---hhhcCCcHHHHHHhhhcccchHHHHHHHHHHHHhh
Q 017249 183 ENS-SP---ILDATAVPPLINLLKDCKKYSKFAEKATALLEILS 222 (375)
Q Consensus 183 ~~~-~~---i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~ 222 (375)
... .. .+....+|.|.+++.+. ...++..|..++..++
T Consensus 178 ~~~~~~l~~~l~~~iip~l~~~l~D~--~~~VR~aA~~~l~~i~ 219 (249)
T 2qk1_A 178 KDGYSTLQRYLKDEVVPIVIQIVNDT--QPAIRTIGFESFAILI 219 (249)
T ss_dssp CSCSHHHHHHHTTTHHHHHHHHHTCS--SHHHHHHHHHHHHHHH
T ss_pred CCcchhHHHHHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHH
Confidence 221 22 12256889999999776 5578999999888776
No 79
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=98.25 E-value=4.2e-05 Score=68.18 Aligned_cols=154 Identities=15% Similarity=0.103 Sum_probs=126.9
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhccChhhHH
Q 017249 25 ALIEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIESSLLALLNLAVRNERNKV 104 (375)
Q Consensus 25 ~~l~~Lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~~~~~~~~~a~~~L~~L~~~~~~~r~ 104 (375)
-.+..+++.|++++.+.+..++..|..+.+.+ ......|+..+|+..|+......+...+..++++|.+|-. ......
T Consensus 118 ~ra~~iiekL~~~~~~~lr~aLfsLk~~~q~D-~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~-~v~Gm~ 195 (339)
T 3dad_A 118 VRVNAILEKLYSSSGPELRRSLFSLKQIFQED-KDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLML-FVDGML 195 (339)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTC-TTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTT-SHHHHH
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHHhhcc-hHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHh-cccccc
Confidence 34678888888888999999999999966555 5899999999999999999999999999999999999987 566776
Q ss_pred HHHH-cCChHHHHHhhcCCChHHHHHHHHHHHHhhccCC-ChhHHHh----------cCChHHHHHHhc---cCCHHHHH
Q 017249 105 KIAT-AGAIPPLVELLKFQNGTLRELAAAAILTLSAAAP-NKPAIAA----------SGAAPLLVQILH---SGSVQGRV 169 (375)
Q Consensus 105 ~i~~-~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~-~~~~i~~----------~~~l~~L~~lL~---~~~~~~~~ 169 (375)
-++. ...|..+..++.+.+..+.+.|+..|..++...+ +...+.. ..-+..|+.+|. +.+.+++.
T Consensus 196 gvvs~~~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~ 275 (339)
T 3dad_A 196 GVVAHSDTIQWLYTLCASLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLV 275 (339)
T ss_dssp HHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHH
T ss_pred chhCCHHHHHHHHHHHcCccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHH
Confidence 6664 6789999999998899999999999999988876 3333221 123788999997 67899999
Q ss_pred HHHHHHHHhcc
Q 017249 170 DAVTALHYLST 180 (375)
Q Consensus 170 ~a~~~L~~L~~ 180 (375)
+|..+|-.+-.
T Consensus 276 ~amtLIN~lL~ 286 (339)
T 3dad_A 276 YTVTLINKTLA 286 (339)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99887766543
No 80
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=98.21 E-value=0.00014 Score=58.64 Aligned_cols=213 Identities=17% Similarity=0.219 Sum_probs=150.2
Q ss_pred CChHHHHHhhCCCCHHHHHHHHHHHHHhhccChhhHHHHHHcCChHHHHHhhc-CCChHHHHHHHHHHHHhhccCCChhH
Q 017249 68 GVVQPLVLMLVSPNLDAIESSLLALLNLAVRNERNKVKIATAGAIPPLVELLK-FQNGTLRELAAAAILTLSAAAPNKPA 146 (375)
Q Consensus 68 g~v~~Lv~~L~~~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~-~~~~~~~~~a~~~L~~Ls~~~~~~~~ 146 (375)
.+++.++.+|.++-..++..|+..+.+++..-++....+.. .|+.+++ +..-...+..+.++..++.-.+ .
T Consensus 32 ~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~epl~~-----kL~vm~~ksEaIpltqeIa~a~G~la~i~P---e 103 (253)
T 2db0_A 32 SVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEPMLK-----KLFSLLKKSEAIPLTQEIAKAFGQMAKEKP---E 103 (253)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGHHHHHH-----HHHHHHHHCCSHHHHHHHHHHHHHHHHHCH---H
T ss_pred HHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHHHHHHH-----HHHHHHhhcccCchHHHHHHHHhHHHHhCH---H
Confidence 57899999999999999999999999999988877776644 6666654 4456665677788888875322 1
Q ss_pred HHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCCCCchhhhhcCCcHHHHHHhhhcccchHHHHHHHHHHHHhhCChh
Q 017249 147 IAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEE 226 (375)
Q Consensus 147 i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~~~~ 226 (375)
+ -.+.+|.+..-..-+++.++.+...+|-.++..++. .-.+++..+..++.+.+. .-+..++ .-+..-.+
T Consensus 104 ~-v~~vVp~lfanyrigd~kikIn~~yaLeeIaranP~----l~~~v~rdi~smltskd~--~Dkl~aL---nFi~alGe 173 (253)
T 2db0_A 104 L-VKSMIPVLFANYRIGDEKTKINVSYALEEIAKANPM----LMASIVRDFMSMLSSKNR--EDKLTAL---NFIEAMGE 173 (253)
T ss_dssp H-HHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHH----HHHHHHHHHHHHTSCSSH--HHHHHHH---HHHHTCCT
T ss_pred H-HHhhHHHHHHHHhcCCccceecHHHHHHHHHHhChH----HHHHHHHHHHHHhcCCCh--HHHHHHH---HHHHHHhc
Confidence 1 134466666666778999999999999888754221 123466778888886532 2223344 33444444
Q ss_pred hhHHHhhccCcHHHHHHHhccCChHHHHHHHHHHHHhcccCcHHHHHHHHHcCChHHHHHHhhhCCHHHHHHHHHHHHHh
Q 017249 227 GRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLL 306 (375)
Q Consensus 227 ~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~~~~~A~~~L~~l 306 (375)
+...-+ .-.+|.|+.+|.+.+..+|..|+.+|.+++.-+ +..+..+. .-++=+.+.+..+++.....|..+
T Consensus 174 n~~~yv--~PfLprL~aLL~D~deiVRaSaVEtL~~lA~~n-pklRkii~------~kl~e~~D~S~lv~~~V~egL~rl 244 (253)
T 2db0_A 174 NSFKYV--NPFLPRIINLLHDGDEIVRASAVEALVHLATLN-DKLRKVVI------KRLEELNDTSSLVNKTVKEGISRL 244 (253)
T ss_dssp TTHHHH--GGGHHHHHGGGGCSSHHHHHHHHHHHHHHHTSC-HHHHHHHH------HHHHHCCCSCHHHHHHHHHHHHHH
T ss_pred cCcccc--CcchHHHHHHHcCcchhhhHHHHHHHHHHHHcC-HHHHHHHH------HHHHHhcCcHHHHHHHHHHHHHHH
Confidence 444444 358999999999999999999999999999987 56555442 233445667788888887777766
Q ss_pred h
Q 017249 307 R 307 (375)
Q Consensus 307 ~ 307 (375)
.
T Consensus 245 ~ 245 (253)
T 2db0_A 245 L 245 (253)
T ss_dssp H
T ss_pred H
Confidence 4
No 81
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=98.18 E-value=3.3e-07 Score=71.69 Aligned_cols=121 Identities=21% Similarity=0.166 Sum_probs=89.5
Q ss_pred cCChHHHHHhhcCCChHHHHHHHHHHHHhhccCCChhHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCCCCchhh
Q 017249 109 AGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTCKENSSPI 188 (375)
Q Consensus 109 ~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i 188 (375)
...++.|+.+|+++++.+|..|+++|..+.. ..++.|+.+|+++++.++..|+++|.++..
T Consensus 11 ~~~~~~l~~~L~~~~~~vR~~A~~~L~~~~~-----------~~~~~L~~~L~d~~~~vR~~A~~aL~~~~~-------- 71 (131)
T 1te4_A 11 SSGLVPRGSHMADENKWVRRDVSTALSRMGD-----------EAFEPLLESLSNEDWRIRGAAAWIIGNFQD-------- 71 (131)
T ss_dssp ----------CCSSCCCSSSSCCSSTTSCSS-----------TTHHHHHHGGGCSCHHHHHHHHHHHGGGCS--------
T ss_pred cccHHHHHHHhcCCCHHHHHHHHHHHHHhCc-----------hHHHHHHHHHcCCCHHHHHHHHHHHHhcCC--------
Confidence 4567889999999999999888877765521 136999999999999999999999988752
Q ss_pred hhcCCcHHHHHHhhhcccchHHHHHHHHHHHHhhCChhhhHHHhhccCcHHHHHHHhccCChHHHHHHHHHHHHh
Q 017249 189 LDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSL 263 (375)
Q Consensus 189 ~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l 263 (375)
...++.|+.++.++ +..++..+.++|..+. ....++.|+.++.+.++.++..|+.+|..+
T Consensus 72 --~~a~~~L~~~L~d~--~~~VR~~A~~aL~~~~-----------~~~a~~~L~~~l~d~~~~vr~~A~~aL~~i 131 (131)
T 1te4_A 72 --ERAVEPLIKLLEDD--SGFVRSGAARSLEQIG-----------GERVRAAMEKLAETGTGFARKVAVNYLETH 131 (131)
T ss_dssp --HHHHHHHHHHHHHC--CTHHHHHHHHHHHHHC-----------SHHHHHHHHHHTTSCCTHHHHHHHHHGGGC
T ss_pred --HHHHHHHHHHHcCC--CHHHHHHHHHHHHHhC-----------cHHHHHHHHHHHhCCCHHHHHHHHHHHHhC
Confidence 23588899999765 4578899999999875 235688899999988999999999988653
No 82
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=98.17 E-value=0.00069 Score=68.93 Aligned_cols=269 Identities=12% Similarity=0.019 Sum_probs=171.7
Q ss_pred hHHHHHHHHhc---CCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCCCC--------HHHHHHHHHHHH
Q 017249 25 ALIEELSDKLI---NGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPN--------LDAIESSLLALL 93 (375)
Q Consensus 25 ~~l~~Lv~~L~---s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~~~--------~~~~~~a~~~L~ 93 (375)
+++..|-..|. ++++.++.-|+-.|.-+..+. .. + ++..|.+.|.+++ +.++..|+..|+
T Consensus 392 ~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~--~~-~------~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLG 462 (963)
T 4ady_A 392 EGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGF--GR-D------TTDYLKNIIVENSGTSGDEDVDVLLHGASLGIG 462 (963)
T ss_dssp THHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTT--TH-H------HHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCC--cH-H------HHHHHHHHHcCccccccccccHHHHHHHHHHHH
Confidence 34555666665 567778888888888776665 11 1 3667777776554 668888888998
Q ss_pred HhhccChhhHHHHHHcCChHHHHHhhcCCChHHHHHHHHHHHHhhccCCChhHHHhcCChHHHHHHh-ccCCHHHHHHHH
Q 017249 94 NLAVRNERNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQIL-HSGSVQGRVDAV 172 (375)
Q Consensus 94 ~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~l~~L~~lL-~~~~~~~~~~a~ 172 (375)
....++. +.. +++.|..++...+..++..|+.+|..+.....+.. .+..|+..+ ...+..+++.++
T Consensus 463 la~~GS~--~ee-----v~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~------ai~~LL~~~~e~~~e~vrR~aa 529 (963)
T 4ady_A 463 LAAMGSA--NIE-----VYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPE------AIHDMFTYSQETQHGNITRGLA 529 (963)
T ss_dssp HHSTTCC--CHH-----HHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHH------HHHHHHHHHHHCSCHHHHHHHH
T ss_pred HHhcCCC--CHH-----HHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHH------HHHHHHHHHhccCcHHHHHHHH
Confidence 8764432 222 35578888887777777778888877655443332 345555554 345678888899
Q ss_pred HHHHHhccCCCCchhhhhcCCcHHHHHHhhhcccchHHHHHHHHHHHHhhCChhhhHHHhhccCcHHHHHHHh-ccCChH
Q 017249 173 TALHYLSTCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETV-EDGSLV 251 (375)
Q Consensus 173 ~~L~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~Lv~lL-~~~~~~ 251 (375)
..|..+..+. ...++.+++.|.... ++.++..+..++..-.....+ ...|+.|++.+ .+.++.
T Consensus 530 lgLGll~~g~--------~e~~~~li~~L~~~~-dp~vRygaa~alglAyaGTGn-------~~aIq~LL~~~~~d~~d~ 593 (963)
T 4ady_A 530 VGLALINYGR--------QELADDLITKMLASD-ESLLRYGGAFTIALAYAGTGN-------NSAVKRLLHVAVSDSNDD 593 (963)
T ss_dssp HHHHHHTTTC--------GGGGHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTSCC-------HHHHHHHHHHHHHCSCHH
T ss_pred HHHHhhhCCC--------hHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHhcCCCC-------HHHHHHHHHHhccCCcHH
Confidence 8888775432 246677888887643 455665555555432222221 12455566665 356788
Q ss_pred HHHHHHHHHHHhcccCcHHHHHHHHHcCChHHHHH-HhhhCCHHHHHHHHHHHHHhhcCChhhhhhhhhHHHHHHHHhhc
Q 017249 252 STQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLR-LTVEGTFEAQERARTLLDLLRDTPQEKRLSSSVLEKIVYDIAAR 330 (375)
Q Consensus 252 ~~~~a~~~L~~l~~~~~~~~~~~l~~~g~v~~L~~-ll~~~~~~~~~~A~~~L~~l~~~~~~~~~~~g~~~~l~~~l~~~ 330 (375)
+|..|+..|+.+..+.. ..++.++. +.++.++.+|..|+.+|..++-..+. ..+++.|.. +.
T Consensus 594 VRraAViaLGlI~~g~~----------e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~----~~aid~L~~-L~-- 656 (963)
T 4ady_A 594 VRRAAVIALGFVLLRDY----------TTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGL----QSAIDVLDP-LT-- 656 (963)
T ss_dssp HHHHHHHHHHHHTSSSC----------SSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCC----HHHHHHHHH-HH--
T ss_pred HHHHHHHHHHhhccCCH----------HHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCc----HHHHHHHHH-Hc--
Confidence 99999999998876652 35667777 55678999999999999999865542 223443332 22
Q ss_pred CCChHHHHHHHHHHHHHH
Q 017249 331 VDGADKAAETAKRLLQDM 348 (375)
Q Consensus 331 ~~g~~~~~~~a~~~l~~l 348 (375)
.|.+...+..|.-.|..+
T Consensus 657 ~D~d~~Vrq~Ai~ALG~I 674 (963)
T 4ady_A 657 KDPVDFVRQAAMIALSMI 674 (963)
T ss_dssp TCSSHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHH
Confidence 344455555555555544
No 83
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=98.04 E-value=0.00019 Score=73.71 Aligned_cols=266 Identities=14% Similarity=0.134 Sum_probs=176.8
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCC--hhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhccChhh
Q 017249 25 ALIEELSDKLINGDLETKIEAARDIRKVVKKSS--LKTRSEFAAAGVVQPLVLMLVSPNLDAIESSLLALLNLAVRNERN 102 (375)
Q Consensus 25 ~~l~~Lv~~L~s~~~~~~~~a~~~l~~l~~~~~--~~~~~~~~~~g~v~~Lv~~L~~~~~~~~~~a~~~L~~L~~~~~~~ 102 (375)
+.+..|.+.+...... ..|+..+..++.... +..--.++ +.++.++..+.+....++..|-.++..+...-+..
T Consensus 54 ~~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~~~e~~~~--~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~ 129 (986)
T 2iw3_A 54 HFFGELAKGIKDKKTA--ANAMQAVAHIANQSNLSPSVEPYIV--QLVPAICTNAGNKDKEIQSVASETLISIVNAVNPV 129 (986)
T ss_dssp HHHHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCTTTHHHHH--TTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGG
T ss_pred hHHHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCCCcccchH--HHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHH
Confidence 4566666666543222 788888988885441 11212222 67889999999888899998888888777543332
Q ss_pred HHHHHHcCChHHHHHhhcCC-ChHHHHHHHHHHHHhhccCCChhHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccC
Q 017249 103 KVKIATAGAIPPLVELLKFQ-NGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTC 181 (375)
Q Consensus 103 r~~i~~~g~i~~Lv~lL~~~-~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~~L~~~ 181 (375)
.. ...+|.|+..|.+. .=..+..|+.++..|+...+.+-...-...+|.+.+.+.+..+++...|..++-.+|..
T Consensus 130 a~----~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~ 205 (986)
T 2iw3_A 130 AI----KALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAKDQVALRMPELIPVLSETMWDTKKEVKAAATAAMTKATET 205 (986)
T ss_dssp GH----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGG
T ss_pred HH----HHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhHHHHHHhccchhcchHhhcccCcHHHHHHHHHHHHHHHhc
Confidence 22 33578999988765 46788899999999987653222223467899999999999999999999999988865
Q ss_pred CCCchhhhhcCCcHHHHHHhhhcccchHHHHHHHHHHHHhhCChhhhHHHhhccCcHHHHHHHhccCChHHHHHHHHHHH
Q 017249 182 KENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALL 261 (375)
Q Consensus 182 ~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~ 261 (375)
-+|... ...+|.|++.+.++. .+. .|...|..-..-.+.-.-.+ +=.+|.|..-|...+..++..++-++.
T Consensus 206 ~~n~d~---~~~~~~~~~~~~~p~---~~~-~~~~~l~~~tfv~~v~~~~l--~~~~p~l~r~l~~~~~~~~r~~~~~~~ 276 (986)
T 2iw3_A 206 VDNKDI---ERFIPSLIQCIADPT---EVP-ETVHLLGATTFVAEVTPATL--SIMVPLLSRGLNERETGIKRKSAVIID 276 (986)
T ss_dssp CCCTTT---GGGHHHHHHHHHCTT---HHH-HHHHHHTTCCCCSCCCHHHH--HHHHHHHHHHHTSSSHHHHHHHHHHHH
T ss_pred CCCcch---hhhHHHHHHHhcChh---hhH-HHHHHhhcCeeEeeecchhH--HHHHHHHHhhhccCcchhheeeEEEEc
Confidence 444333 246888999888763 332 24444432222111111111 124555666666778888999999999
Q ss_pred HhcccCcHHHHHHHHHcCChHHHHHHhh-hCCHHHHHHHHHHHHHhh
Q 017249 262 SLCQSCRDKYRQLILKEGAIPGLLRLTV-EGTFEAQERARTLLDLLR 307 (375)
Q Consensus 262 ~l~~~~~~~~~~~l~~~g~v~~L~~ll~-~~~~~~~~~A~~~L~~l~ 307 (375)
|||.--++..-..-+-...+|.|.+... -.+|++|+.|..++..|.
T Consensus 277 n~~~lv~~~~~~~~f~~~l~p~~~~~~~~~~~pe~r~~~~~a~~~l~ 323 (986)
T 2iw3_A 277 NMCKLVEDPQVIAPFLGKLLPGLKSNFATIADPEAREVTLRALKTLR 323 (986)
T ss_dssp HHHTTCCCHHHHHHHHTTTHHHHHHHTTTCCSHHHHHHHHHHHHHHH
T ss_pred chhhhcCCHHHHhhhhhhhhhHHHHHhhccCCHHHHHHHHHHHHHHH
Confidence 9998532211112233677888877666 468999999999888884
No 84
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=98.02 E-value=4e-05 Score=69.94 Aligned_cols=241 Identities=11% Similarity=0.010 Sum_probs=129.3
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhccChhhHHH
Q 017249 26 LIEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIESSLLALLNLAVRNERNKVK 105 (375)
Q Consensus 26 ~l~~Lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~~~~~~~~~a~~~L~~L~~~~~~~r~~ 105 (375)
.+..+.+-++++++-.+-.|++++.++...+ ... ...+.+.+.|.+.++-++..|+-+..+|....++.-
T Consensus 105 v~Nsl~kDl~~~N~~iR~lALRtL~~I~~~~---m~~-----~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~pe~v-- 174 (355)
T 3tjz_B 105 VTSSLTKDMTGKEDSYRGPAVRALCQITDST---MLQ-----AIERYMKQAIVDKVPSVSSSALVSSLHLLKCSFDVV-- 174 (355)
T ss_dssp GHHHHHHHHHSSCHHHHHHHHHHHHHHCCTT---THH-----HHHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCHHHH--
T ss_pred HHHHHHhhcCCCcHhHHHHHHHHHhcCCCHH---HHH-----HHHHHHHHHcCCCCHHHHHHHHHHHHHHhccCHHHH--
Confidence 3556677778899999999999999987655 222 235678888999999999999999999998766532
Q ss_pred HHHcCChHHHHHhhcCCChHHHHHHHHHHHHhhccCCChhHHHhcCChHHHHHHhccC---CHHHHHHHHHHHHHhccCC
Q 017249 106 IATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHSG---SVQGRVDAVTALHYLSTCK 182 (375)
Q Consensus 106 i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~l~~L~~lL~~~---~~~~~~~a~~~L~~L~~~~ 182 (375)
.++++.+-+++.+.++-++.+|+.+|..+...+. . .+..|+..+... ++-.+...+..+..+...+
T Consensus 175 ---~~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~d~--~------a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d 243 (355)
T 3tjz_B 175 ---KRWVNEAQEAASSDNIMVQYHALGLLYHVRKNDR--L------AVSKMISKFTRHGLKSPFAYCMMIRVASRQLEDE 243 (355)
T ss_dssp ---HTTHHHHHHHTTCSSHHHHHHHHHHHHHHHTTCH--H------HHHHHHHHHHSSCCSCHHHHHHHHHHHTCC----
T ss_pred ---HHHHHHHHHHhcCCCccHHHHHHHHHHHHHhhch--H------HHHHHHHHHhcCCCcChHHHHHHHHHHHHhcccc
Confidence 2688999999999999999999999999976531 1 334455555443 3443444444443443322
Q ss_pred CCchhhhhcCCcHHHHHHhhhcccchHHHHHHHHHHHHhhCChhhhHHHhhccCcHHHHHHHhccCChHHHHHHHHHHHH
Q 017249 183 ENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLS 262 (375)
Q Consensus 183 ~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~ 262 (375)
+. -.....++.+...+++. ...+.-.|.+++..+...+. ... ..++..|..+|.++++.+|-.|+..|..
T Consensus 244 ~~---~~~~~~~~~l~~~L~~~--~~aVvyEa~k~I~~l~~~~~---~~~--~~a~~~L~~fLss~d~niryvaLr~L~~ 313 (355)
T 3tjz_B 244 DG---SRDSPLFDFIESCLRNK--HEMVVYEAASAIVNLPGCSA---KEL--APAVSVLQLFCSSPKAALRYAAVRTLNK 313 (355)
T ss_dssp ----------------CCCCCS--SHHHHHHHHHHHTC----------------CCCTHHHHHHSSSSSSHHHHHHCC--
T ss_pred ch---hhHHHHHHHHHHHHcCC--ChHHHHHHHHHHHhccCCCH---HHH--HHHHHHHHHHHcCCCchHHHHHHHHHHH
Confidence 00 01234555666666654 34566667777776654222 122 2456677788888889999999999988
Q ss_pred hcccCcHHHHHHHHHcCChHHHHHHhhhCCHHHHHHHHHHH
Q 017249 263 LCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLL 303 (375)
Q Consensus 263 l~~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~~~~~A~~~L 303 (375)
+.... |+. +. ..-..+.+++.++|..+...|...|
T Consensus 314 l~~~~-P~~---v~--~~n~~ie~li~d~n~sI~t~Aittl 348 (355)
T 3tjz_B 314 VAMKH-PSA---VT--ACNLDLENLVTDANRSIATLAITTL 348 (355)
T ss_dssp -----------------------------------------
T ss_pred HHHHC-cHH---HH--HHHHHHHHHccCCcHhHHHHHHHHh
Confidence 87765 321 21 1334456677777777777666643
No 85
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=97.99 E-value=0.00011 Score=65.38 Aligned_cols=152 Identities=14% Similarity=0.109 Sum_probs=122.3
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHH-hccCCCCchhhhhcCCcHHHHHHhhhcccchHHHHHHHHHHHHhhCChhhhHHHh
Q 017249 154 PLLVQILHSGSVQGRVDAVTALHY-LSTCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAIT 232 (375)
Q Consensus 154 ~~L~~lL~~~~~~~~~~a~~~L~~-L~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~ 232 (375)
..+++-|.+.+.+.+..++.-|.. +..+.+-...+++.+|+..|+++..+. +..++..++++|.+|-.+..+...++
T Consensus 121 ~~iiekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~--~gN~q~Y~L~AL~~LM~~v~Gm~gvv 198 (339)
T 3dad_A 121 NAILEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAA--DHNYQSYILRALGQLMLFVDGMLGVV 198 (339)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTS--CHHHHHHHHHHHHHHTTSHHHHHHHH
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhc--ChHHHHHHHHHHHHHHhccccccchh
Confidence 356677778888888899999988 566677788999999999999999876 55788999999999999999988888
Q ss_pred hccCcHHHHHHHhccCChHHHHHHHHHHHHhcccCcHHHHHHHHH--------cC--ChHHHHHHhh---hCCHHHHHHH
Q 017249 233 NSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILK--------EG--AIPGLLRLTV---EGTFEAQERA 299 (375)
Q Consensus 233 ~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~--------~g--~v~~L~~ll~---~~~~~~~~~A 299 (375)
.+...|..+..++.+....+...|+.+|..++..+. .....+.+ .| -++.|+.++. +++.+++.+|
T Consensus 199 s~~~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se-~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~a 277 (339)
T 3dad_A 199 AHSDTIQWLYTLCASLSRLVVKTALKLLLVFVEYSE-NNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYT 277 (339)
T ss_dssp HCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCG-GGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHH
T ss_pred CCHHHHHHHHHHHcCccHHHHHHHHHHHHHHHccCc-ccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHH
Confidence 667799999999998889999999999999988763 11222211 12 3788999887 6789999998
Q ss_pred HHHHHHhhc
Q 017249 300 RTLLDLLRD 308 (375)
Q Consensus 300 ~~~L~~l~~ 308 (375)
..++..+-.
T Consensus 278 mtLIN~lL~ 286 (339)
T 3dad_A 278 VTLINKTLA 286 (339)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 887775543
No 86
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=97.74 E-value=0.00041 Score=64.97 Aligned_cols=231 Identities=17% Similarity=0.132 Sum_probs=148.2
Q ss_pred HHHHhcC-CCHHHHHHHHHHHHHHHhhCChhhHHHHHhcC--ChHHHHHhhC---------------CC--CHHHHHHHH
Q 017249 30 LSDKLIN-GDLETKIEAARDIRKVVKKSSLKTRSEFAAAG--VVQPLVLMLV---------------SP--NLDAIESSL 89 (375)
Q Consensus 30 Lv~~L~s-~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g--~v~~Lv~~L~---------------~~--~~~~~~~a~ 89 (375)
++..|.. ++...+..++.++..+...+ +.|..+.+.+ .++.++..++ ++ ...++-+++
T Consensus 172 ~~~~L~~~~~~~~~~i~v~~L~~Ll~~~--~~R~~f~~~~~~~~~~l~~il~~~~~~~~~~~~~~~~~~~~~~Ql~Y~~l 249 (480)
T 1ho8_A 172 LINILQNIEQMDTCYVCIRLLQELAVIP--EYRDVIWLHEKKFMPTLFKILQRATDSQLATRIVATNSNHLGIQLQYHSL 249 (480)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHHHTSH--HHHHHHHTTHHHHHHHHHHHHHHHHC-------------CCHHHHHHHHH
T ss_pred HHHHhccccCCchHHHHHHHHHHHhcch--hHHHHHHHcccchhHHHHHHHHHhhccccccccccccCCCccHHHHHHHH
Confidence 4444544 34555667899999999877 8999888653 3666654432 11 245678899
Q ss_pred HHHHHhhccChhhHHHHHHcCCh--HHHHHhhcCC-ChHHHHHHHHHHHHhhccCC-Chh-----HHHhcCChHHHHHHh
Q 017249 90 LALLNLAVRNERNKVKIATAGAI--PPLVELLKFQ-NGTLRELAAAAILTLSAAAP-NKP-----AIAASGAAPLLVQIL 160 (375)
Q Consensus 90 ~~L~~L~~~~~~~r~~i~~~g~i--~~Lv~lL~~~-~~~~~~~a~~~L~~Ls~~~~-~~~-----~i~~~~~l~~L~~lL 160 (375)
-+++-|+. +++....+...+.. +.|+.+++.. ...+.+.++.+|.|+..... ... .+...++ ..++..|
T Consensus 250 l~iWlLSF-~~~~~~~l~~~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~~~~~~~~~~~~~~~~-l~~l~~L 327 (480)
T 1ho8_A 250 LLIWLLTF-NPVFANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIKQLLLLGNA-LPTVQSL 327 (480)
T ss_dssp HHHHHHTT-SHHHHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHHHHHHHHCH-HHHHHHH
T ss_pred HHHHHHHc-CHHHHHHHHhcchHHHHHHHHHHHhhccchhHHHHHHHHHHHhcccchhhhhHHHHHHHHccc-hHHHHHH
Confidence 99999998 56666777666643 6677777654 68888899999999987652 211 2222344 4566666
Q ss_pred ccC---CHHHHHHHHHH-------HHHhcc---------------CCC---------Cchhhhh--cCCcHHHHHHhhhc
Q 017249 161 HSG---SVQGRVDAVTA-------LHYLST---------------CKE---------NSSPILD--ATAVPPLINLLKDC 204 (375)
Q Consensus 161 ~~~---~~~~~~~a~~~-------L~~L~~---------------~~~---------~~~~i~~--~g~i~~Lv~ll~~~ 204 (375)
... |+++....-.+ +..++. +|. |...+-+ -..+..|+++|.+.
T Consensus 328 ~~rk~~Dedl~edl~~L~e~L~~~~~~ltsfDeY~~El~sG~L~WSP~H~se~FW~ENa~kf~e~~~~llk~L~~iL~~~ 407 (480)
T 1ho8_A 328 SERKYSDEELRQDISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQAK 407 (480)
T ss_dssp HSSCCSSHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGSSGGGHHHHHHHHHHHHH
T ss_pred hhCCCCcHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhcCCcccCCCccchhHHHHHHHHHHhcchHHHHHHHHHHhhh
Confidence 443 34333222111 122221 111 2223322 24678899999752
Q ss_pred --------ccchHHHHHHHHHHHHhhC-ChhhhHHHhhccCcHHHHHHHhccCChHHHHHHHHHHHHhcc
Q 017249 205 --------KKYSKFAEKATALLEILSS-SEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQ 265 (375)
Q Consensus 205 --------~~~~~~~~~a~~~L~~l~~-~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~ 265 (375)
+.++.+..-||.=++.++. .|.++..+- .-|+=..++.++.++++.++.+|+.++..+..
T Consensus 408 ~~~~~~~~s~d~~~laVAc~Digefvr~~P~gr~i~~-~lg~K~~VM~Lm~h~d~~Vr~~AL~avQklm~ 476 (480)
T 1ho8_A 408 VRNGDVNAKQEKIIIQVALNDITHVVELLPESIDVLD-KTGGKADIMELLNHSDSRVKYEALKATQAIIG 476 (480)
T ss_dssp HHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHH-HHSHHHHHHHHTSCSSHHHHHHHHHHHHHHHH
T ss_pred ccccccccCCCcceEEeecccHHHHHHHCcchhHHHH-HcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 2244555566777888886 566666555 67898899999999999999999999877654
No 87
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=97.30 E-value=0.0064 Score=51.86 Aligned_cols=221 Identities=16% Similarity=0.137 Sum_probs=143.0
Q ss_pred HHHHHHHHHHHHhhccChhhHHHHHH-cCChHHHHHhh-------cCCC-----hHHHHHHHHHHHHhhccCCChhHHHh
Q 017249 83 DAIESSLLALLNLAVRNERNKVKIAT-AGAIPPLVELL-------KFQN-----GTLRELAAAAILTLSAAAPNKPAIAA 149 (375)
Q Consensus 83 ~~~~~a~~~L~~L~~~~~~~r~~i~~-~g~i~~Lv~lL-------~~~~-----~~~~~~a~~~L~~Ls~~~~~~~~i~~ 149 (375)
+.++.|+..|..=-...++.-..+-. .|.+..|++=+ ..+. ..-..+|+..|-.++.+++.+..+..
T Consensus 16 ~~Re~AL~eLsk~Re~~~~La~~LW~S~Gtia~LLQEIisiYp~lspp~Lt~~~SnRVcnaLaLlQcvAshpetr~~Fl~ 95 (268)
T 2fv2_A 16 ETRENALLELSKKRESVPDLAPMLWHSFGTIAALLQEIVNIYPSINPPTLTAHQSNRVCNALALLQCVASHPETRSAFLA 95 (268)
T ss_dssp TTHHHHHHHHHHHTTTCTTHHHHHHHSTTHHHHHHHHHHHTGGGBTTBCCCHHHHHHHHHHHHHHHHHHHCTTTHHHHHH
T ss_pred hhHHHHHHHHHHhhhccccHHHHHHhccCHHHHHHHHHHHHcccCCCcccCHHHHhHHHHHHHHHHHHHcCcchhhHHHH
Confidence 45777776666543333344444444 45555554322 1111 11235677777889999999999998
Q ss_pred cCChHHHHHHhccCC-----HHHHHHHHHHHHHhccCC--CCchhhhhcCCcHHHHHHhhhcccchHHHHHHHHHHHHhh
Q 017249 150 SGAAPLLVQILHSGS-----VQGRVDAVTALHYLSTCK--ENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILS 222 (375)
Q Consensus 150 ~~~l~~L~~lL~~~~-----~~~~~~a~~~L~~L~~~~--~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~ 222 (375)
....-.|...|+..+ ...+-.+++++..|...+ +....+.+.+.+|.+++.+..+++-. +..|..++..+-
T Consensus 96 a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLrime~GselS--KtvAtfIlqKIL 173 (268)
T 2fv2_A 96 AHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIMESGSELS--KTVATFILQKIL 173 (268)
T ss_dssp TTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHHHHHHSCHHH--HHHHHHHHHHHH
T ss_pred ccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHHHHhhccHHH--HHHHHHHHHHHh
Confidence 887777888887654 456888999999998543 45666778899999999999986433 344777777777
Q ss_pred CChhhhHHHhhccCcH-------HHHHH-HhccCChHHHHHHHHHHHHhcccCcHHHHHHHHHc--C-ChHHHHHHhhhC
Q 017249 223 SSEEGRIAITNSDGGI-------LTLVE-TVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKE--G-AIPGLLRLTVEG 291 (375)
Q Consensus 223 ~~~~~~~~~~~~~g~v-------~~Lv~-lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~--g-~v~~L~~ll~~~ 291 (375)
.++.+...+.....-+ ..++. +.+.+++.+-++.+++-..|+.+. ..++++... . .-..-...+-.+
T Consensus 174 ~dd~GL~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYlRLsdn~--rar~aL~~~LP~~Lrd~tf~~~l~~ 251 (268)
T 2fv2_A 174 LDDTGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDNP--RAREALRQCLPDQLKDTTFAQVLKD 251 (268)
T ss_dssp HSHHHHHHHTSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTSH--HHHHHHHHHSCGGGTSSTTHHHHTS
T ss_pred ccchhHHHHHccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCH--HHHHHHHHhCcHHhhChHHHHHHhc
Confidence 6666655555333322 22332 235678889999999999999874 667776541 1 111111122247
Q ss_pred CHHHHHHHHHHHHHhh
Q 017249 292 TFEAQERARTLLDLLR 307 (375)
Q Consensus 292 ~~~~~~~A~~~L~~l~ 307 (375)
|+.+++--..++.|+.
T Consensus 252 D~~~k~~l~qLl~n~~ 267 (268)
T 2fv2_A 252 DTTTKRWLAQLVKNLQ 267 (268)
T ss_dssp CHHHHHHHHHHHHHSC
T ss_pred CHHHHHHHHHHHHhcC
Confidence 8888888877877763
No 88
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=97.28 E-value=0.0087 Score=51.03 Aligned_cols=99 Identities=21% Similarity=0.161 Sum_probs=87.3
Q ss_pred HHHHHHHHHHhhCChhhhHHHhhccCcHHHHHHHhccCC-----hHHHHHHHHHHHHhcccCcHHHHHHHHHcCChHHHH
Q 017249 211 AEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGS-----LVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLL 285 (375)
Q Consensus 211 ~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~-----~~~~~~a~~~L~~l~~~~~~~~~~~l~~~g~v~~L~ 285 (375)
.-+|+..|..++.+++.|..++ .++..-.|.++|...+ +.+|-.++++++.+...++++....+.+.+++|..+
T Consensus 73 VcnaLaLlQcvAshpetr~~Fl-~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCL 151 (268)
T 2fv2_A 73 VCNALALLQCVASHPETRSAFL-AAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCL 151 (268)
T ss_dssp HHHHHHHHHHHHHCTTTHHHHH-HTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHH
T ss_pred HHHHHHHHHHHHcCcchhhHHH-HccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHH
Confidence 3668888999999999999999 5788888999997543 578889999999999988889999999999999999
Q ss_pred HHhhhCCHHHHHHHHHHHHHhhcCC
Q 017249 286 RLTVEGTFEAQERARTLLDLLRDTP 310 (375)
Q Consensus 286 ~ll~~~~~~~~~~A~~~L~~l~~~~ 310 (375)
+.++.|+.-.|.-|..++..+-.+.
T Consensus 152 rime~GselSKtvAtfIlqKIL~dd 176 (268)
T 2fv2_A 152 RIMESGSELSKTVATFILQKILLDD 176 (268)
T ss_dssp HHHHHSCHHHHHHHHHHHHHHHHSH
T ss_pred HHHhhccHHHHHHHHHHHHHHhccc
Confidence 9999999999999999988875444
No 89
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=97.26 E-value=0.0059 Score=63.65 Aligned_cols=315 Identities=8% Similarity=0.019 Sum_probs=162.7
Q ss_pred HhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCC-----hhhHHHHH--hcCChHHHHH-------hhCCCCH-------
Q 017249 24 QALIEELSDKLINGDLETKIEAARDIRKVVKKSS-----LKTRSEFA--AAGVVQPLVL-------MLVSPNL------- 82 (375)
Q Consensus 24 ~~~l~~Lv~~L~s~~~~~~~~a~~~l~~l~~~~~-----~~~~~~~~--~~g~v~~Lv~-------~L~~~~~------- 82 (375)
.+.++.|+..++++++..+..++.++..++.... ++.+..+. -....+.+++ .+..+..
T Consensus 122 p~ll~~L~~~l~s~~~~~~~~aL~~l~~i~~~~~~~~~~~~~~~~l~~~l~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~ 201 (960)
T 1wa5_C 122 PTLLSDLASRLSNDDMVTNKGVLTVAHSIFKRWRPLFRSDELFLEIKLVLDVFTAPFLNLLKTVDEQITANENNKASLNI 201 (960)
T ss_dssp TTHHHHHHTTCCSSCTTHHHHHHHHHHHHHGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC--CHHHHH
T ss_pred hHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH
Confidence 3567888888888888888889999999887430 12222111 0112333333 3444321
Q ss_pred --HHHHHHHHHHHHhhcc-Chh-hHHHHHHcCChHHHHHhhcCC------C---------hHHHHHHHHHHHHhhccCCC
Q 017249 83 --DAIESSLLALLNLAVR-NER-NKVKIATAGAIPPLVELLKFQ------N---------GTLRELAAAAILTLSAAAPN 143 (375)
Q Consensus 83 --~~~~~a~~~L~~L~~~-~~~-~r~~i~~~g~i~~Lv~lL~~~------~---------~~~~~~a~~~L~~Ls~~~~~ 143 (375)
++...+++++..+... .+. ....+ ...++.+..++... + ..++..++.+|..+.....
T Consensus 202 ~~~~~~~~~k~~~~l~~~~~~~~~~~~~--~~~~~~~~~~l~~~~p~~~~d~d~~~~~~~~~vk~~~~~~l~~l~~~~~- 278 (960)
T 1wa5_C 202 LFDVLLVLIKLYYDFNCQDIPEFFEDNI--QVGMGIFHKYLSYSNPLLEDPDETEHASVLIKVKSSIQELVQLYTTRYE- 278 (960)
T ss_dssp HHHHHHHHHHHHHHHHSSCCCHHHHHTH--HHHHHHHHHHHSCCSCCCC------CCCHHHHHHHHHHHHHHHHHHHCH-
T ss_pred HHHHHHHHHHHHHHHhhccchHHHHHHH--HHHHHHHHHHHcCCCCcccCCcccccccHHHHHHHHHHHHHHHHHHHHH-
Confidence 2333466666665421 111 11111 12235555655331 1 2356777778777764322
Q ss_pred hhHHH--hcCChHHHHHHhc-----cCCHHHHHHHHHHHHHhccCCCCchhhhhcCCcHHHH-----HHhh--hc-----
Q 017249 144 KPAIA--ASGAAPLLVQILH-----SGSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLI-----NLLK--DC----- 204 (375)
Q Consensus 144 ~~~i~--~~~~l~~L~~lL~-----~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv-----~ll~--~~----- 204 (375)
..+. -...++..++.+. ..+..+...++..+..++..+.....+...+.++.++ ..+. ..
T Consensus 279 -~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~fl~~~~~~~~~~~~~~~~~~l~~li~~~i~~~m~~~~~d~e~w 357 (960)
T 1wa5_C 279 -DVFGPMINEFIQITWNLLTSISNQPKYDILVSKSLSFLTAVTRIPKYFEIFNNESAMNNITEQIILPNVTLREEDVELF 357 (960)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHCCSCTTSHHHHHHHHHHHHHHHTSHHHHGGGCSHHHHHHHHHHTHHHHHSCCGGGTTTT
T ss_pred -HHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHHHHHHhCcHhHHHHHcCchHHHHHHHHHhHHhcCCCHHHHHHH
Confidence 1111 1234555555554 2346778888888887765433222221112333333 2221 00
Q ss_pred --------------ccchHHHHHHHHHHHHhhCChhhhHHHhhccCcHHHHHHHhc------cCChHHHHHHHHHHHHhc
Q 017249 205 --------------KKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVE------DGSLVSTQHAVGALLSLC 264 (375)
Q Consensus 205 --------------~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~Lv~lL~------~~~~~~~~~a~~~L~~l~ 264 (375)
......+..|..+|..++..-. +.++ ...++.+.+.+. +.+-..++.|+.++..++
T Consensus 358 ~~dp~e~i~~d~e~~d~~s~R~aa~~~L~~l~~~~~--~~v~--~~~l~~i~~~l~~~~~~~~~~w~~reaal~algaia 433 (960)
T 1wa5_C 358 EDDPIEYIRRDLEGSDTDTRRRACTDFLKELKEKNE--VLVT--NIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALA 433 (960)
T ss_dssp TTCHHHHHHHHHHC----CHHHHHHHHHHHHHHHCH--HHHH--HHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHH
T ss_pred hcCHHHHHHhccCcccccCcHHHHHHHHHHHHHHcc--hhHH--HHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHH
Confidence 0011244556666666664322 1222 123333444444 344567889999999997
Q ss_pred ccCc--HHHHHHHHH-cCChHH----HHHHhhhC---CHHHHHHHHHHHHHhhcCChhhhhhhhhHHHHHHHHhhcCCCh
Q 017249 265 QSCR--DKYRQLILK-EGAIPG----LLRLTVEG---TFEAQERARTLLDLLRDTPQEKRLSSSVLEKIVYDIAARVDGA 334 (375)
Q Consensus 265 ~~~~--~~~~~~l~~-~g~v~~----L~~ll~~~---~~~~~~~A~~~L~~l~~~~~~~~~~~g~~~~l~~~l~~~~~g~ 334 (375)
.+.. ......... ..+.+. ++..+.+. +|.+|..|+++|..+++.-+. -.-..+++.++..|. +..
T Consensus 434 ~~~~~~~~~~~~~~~~~~l~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~~~-~~l~~~l~~l~~~L~---d~~ 509 (960)
T 1wa5_C 434 INGNITNAGVSSTNNLLNVVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLTK-AQLIELMPILATFLQ---TDE 509 (960)
T ss_dssp BSSCCBTTBCCCBCTTCCHHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSCH-HHHHHHHHHHHHHTT---CSC
T ss_pred HHhccccCCcccccccccHHHHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhCCH-HHHHHHHHHHHHHhC---CCC
Confidence 5421 000000000 012222 23334555 899999999999999876422 233446677776664 445
Q ss_pred HHHHHHHHHHHHHHHH
Q 017249 335 DKAAETAKRLLQDMVQ 350 (375)
Q Consensus 335 ~~~~~~a~~~l~~l~~ 350 (375)
.+.+..|..+|+.|..
T Consensus 510 ~~V~~~A~~Al~~~~~ 525 (960)
T 1wa5_C 510 YVVYTYAAITIEKILT 525 (960)
T ss_dssp HHHHHHHHHHHHHHTT
T ss_pred hhHHHHHHHHHHHHHh
Confidence 8999999999999875
No 90
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=97.22 E-value=0.061 Score=55.98 Aligned_cols=253 Identities=14% Similarity=0.096 Sum_probs=142.9
Q ss_pred HHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhC------CCCHHHHHHHHHHHHHhhccCh--h----------
Q 017249 40 ETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLV------SPNLDAIESSLLALLNLAVRNE--R---------- 101 (375)
Q Consensus 40 ~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~------~~~~~~~~~a~~~L~~L~~~~~--~---------- 101 (375)
..+..|..+|..++... + +.+. .-+++.+.+.+. +.+...++.|+.+++.++.+.. .
T Consensus 376 s~R~aa~~~L~~l~~~~-~---~~v~-~~~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~ 450 (960)
T 1wa5_C 376 TRRRACTDFLKELKEKN-E---VLVT-NIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLL 450 (960)
T ss_dssp CHHHHHHHHHHHHHHHC-H---HHHH-HHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTC
T ss_pred CcHHHHHHHHHHHHHHc-c---hhHH-HHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhccccCCcccccccc
Confidence 45667778888888776 2 1111 012333334444 5567889999999999975311 0
Q ss_pred hHHHHHHcCChHHHHHhhcCC---ChHHHHHHHHHHHHhhccCCChhHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHh
Q 017249 102 NKVKIATAGAIPPLVELLKFQ---NGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYL 178 (375)
Q Consensus 102 ~r~~i~~~g~i~~Lv~lL~~~---~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~~L 178 (375)
.-..+.. ..++..+.++ ++-+|..|++++..++..- ... .-...++.++..|.+++..++..|+.+|.++
T Consensus 451 ~l~~~l~----~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~-~~~--~l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~ 523 (960)
T 1wa5_C 451 NVVDFFT----KEIAPDLTSNNIPHIILRVDAIKYIYTFRNQL-TKA--QLIELMPILATFLQTDEYVVYTYAAITIEKI 523 (960)
T ss_dssp CHHHHHH----HHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGS-CHH--HHHHHHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred cHHHHHH----HHhHHHhcCCCCCCceehHHHHHHHHHHHhhC-CHH--HHHHHHHHHHHHhCCCChhHHHHHHHHHHHH
Confidence 1111111 1223334555 8899999999999998753 122 2345678888888888899999999999999
Q ss_pred ccCCC---------Cchhhhh--cCCcHHHHHHhhhcc---cchHHHHHHHHHHHHhhCC-hhhhHHHhhccCcHHHHHH
Q 017249 179 STCKE---------NSSPILD--ATAVPPLINLLKDCK---KYSKFAEKATALLEILSSS-EEGRIAITNSDGGILTLVE 243 (375)
Q Consensus 179 ~~~~~---------~~~~i~~--~g~i~~Lv~ll~~~~---~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~~g~v~~Lv~ 243 (375)
+...+ .+..+.. ...++.|+.++.... ......+.+..+|..++.. .+...... ...++.|+.
T Consensus 524 ~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~~~~~p~~--~~l~~~L~~ 601 (960)
T 1wa5_C 524 LTIRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLF--PQLLAQFIE 601 (960)
T ss_dssp TTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGH--HHHHHHHHH
T ss_pred HhcccccccccccccHHHhhhhHHHHHHHHHHHHHhccCCCCcccccHHHHHHHHHHHHHHHHhhhhHH--HHHHHHHHH
Confidence 86421 1222221 245666666666531 0000123344555444321 11111111 124444544
Q ss_pred Hhc----c-CChHHHHHHHHHHHHhcccCcHHHHHHHHHcCChHHHHHHhhhCCHHHHHHHHHHHHHhh
Q 017249 244 TVE----D-GSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLR 307 (375)
Q Consensus 244 lL~----~-~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~~~~~A~~~L~~l~ 307 (375)
.+. + .++..+..++.+|..++....++... -+...++|.+..++........+.+..++..+.
T Consensus 602 ~l~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~-~~~~~~~p~~~~iL~~~~~~~~~~~~~i~~~l~ 669 (960)
T 1wa5_C 602 IVTIMAKNPSNPRFTHYTFESIGAILNYTQRQNLP-LLVDSMMPTFLTVFSEDIQEFIPYVFQIIAFVV 669 (960)
T ss_dssp HHHHHTTSCCCHHHHHHHHHHHHHHHHTSCGGGHH-HHHHHHHHHHHHHHHTTCTTTHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCcHHHHHHHHHHHHHHhcCCcchHH-HHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHH
Confidence 442 2 34566677888888887663332222 234556788888777665666666776666554
No 91
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=97.16 E-value=0.02 Score=50.30 Aligned_cols=187 Identities=14% Similarity=0.127 Sum_probs=123.8
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHHhhCChh-hHHHHHh-c-CChHHHHHhhCCCCHHHHHHHHHHHHHhhccCh-----h
Q 017249 30 LSDKLINGDLETKIEAARDIRKVVKKSSLK-TRSEFAA-A-GVVQPLVLMLVSPNLDAIESSLLALLNLAVRNE-----R 101 (375)
Q Consensus 30 Lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~-~~~~~~~-~-g~v~~Lv~~L~~~~~~~~~~a~~~L~~L~~~~~-----~ 101 (375)
|-+.|.+.++..+.+|+..+..+....+.. ..+.... . ...+.+-..+.+.+..++..++.+|..++.... .
T Consensus 14 l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~ 93 (278)
T 4ffb_C 14 LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKN 93 (278)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCH
T ss_pred HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhccc
Confidence 668899999999999999999988765111 1111111 2 345667778889999999999999988874311 1
Q ss_pred hHHHHHHcCChHHHHHh-hcCCChHHHHHHHHHHHHhhccCCChhHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhcc
Q 017249 102 NKVKIATAGAIPPLVEL-LKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLST 180 (375)
Q Consensus 102 ~r~~i~~~g~i~~Lv~l-L~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~~L~~ 180 (375)
.+....-..+++.|+.- +.+..+.++..+..++..++........ .++.+...+.+.++.++..++..|..+..
T Consensus 94 ~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~~~-----~~e~l~~~l~~Knpkv~~~~l~~l~~~l~ 168 (278)
T 4ffb_C 94 AHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSITQ-----SVELVIPFFEKKLPKLIAAAANCVYELMA 168 (278)
T ss_dssp HHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSSHH-----HHHHHGGGGGCSCHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcHHH-----HHHHHHHHHhccCHHHHHHHHHHHHHHHH
Confidence 11222234567888864 7888899999999998887654332222 24667777888999999999999887753
Q ss_pred C--CCCch-hhhhcCCcHHHHHHhhhcccchHHHHHHHHHHHHhhC
Q 017249 181 C--KENSS-PILDATAVPPLINLLKDCKKYSKFAEKATALLEILSS 223 (375)
Q Consensus 181 ~--~~~~~-~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~ 223 (375)
. ..... ...-..+++.+..++.+. +..++..|..++..+-.
T Consensus 169 ~fg~~~~~~k~~l~~i~~~l~k~l~d~--~~~VR~aA~~l~~~ly~ 212 (278)
T 4ffb_C 169 AFGLTNVNVQTFLPELLKHVPQLAGHG--DRNVRSQTMNLIVEIYK 212 (278)
T ss_dssp HHTTTTCCHHHHHHHHGGGHHHHHTCS--SHHHHHHHHHHHHHHHT
T ss_pred HhCCCcCCchhHHHHHHHHHHHHHhCC--cHHHHHHHHHHHHHHHH
Confidence 2 11111 101112455666677665 56789989888876653
No 92
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=97.16 E-value=0.0033 Score=59.68 Aligned_cols=239 Identities=12% Similarity=0.038 Sum_probs=154.2
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhh-----C-------CC-CHHHHHHHHHHH
Q 017249 26 LIEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLML-----V-------SP-NLDAIESSLLAL 92 (375)
Q Consensus 26 ~l~~Lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L-----~-------~~-~~~~~~~a~~~L 92 (375)
....|+.-|-++.++++.=|+..|+.+.... ..........+- +..+.++ . +. -..||+.++.+|
T Consensus 175 fcE~L~~DLFdp~WEiRHGAALGLREILR~h-G~GAGR~~~~N~-DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQtL 252 (800)
T 3oc3_A 175 FFEQISDNLLSYEWYKRHGAFLAFAAMFSEI-DNGGDIQIRVDS-KLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYLL 252 (800)
T ss_dssp TTHHHHHHTTCSSHHHHHHHHHHHHHHHHHC-C----CCCCCCT-THHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHHHH
T ss_pred HHHHHHHHhcCcchhhhhHHHHHHHHHHHHh-ccCCceeccccH-HHHHHHHHHHHhccccccccCeeeeehHHHHHHHH
Confidence 6678888888999999999999999998665 211111111111 2222222 1 11 257899999999
Q ss_pred HHhhccChhhHHHHHHcCChHHHHHhhcCCChHHHHHHHHHHHHhhccCCChhHHH-hcCChHHHHHHhccCCHHHHHHH
Q 017249 93 LNLAVRNERNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIA-ASGAAPLLVQILHSGSVQGRVDA 171 (375)
Q Consensus 93 ~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~-~~~~l~~L~~lL~~~~~~~~~~a 171 (375)
+.+ ..-+.. ..++..|+..+..+.=+++..++-.|..+ +..+. -.++++.++..|.+.+.+++..|
T Consensus 253 GaL-~hLp~e------~~IL~qLV~~l~~~~WEVRHGGLLGLKYL------~DLL~~Ld~Vv~aVL~GL~D~DDDVRAVA 319 (800)
T 3oc3_A 253 SRI-YPLIGP------NDIIEQLVGFLDSGDWQVQFSGLIALGYL------KEFVEDKDGLCRKLVSLLSSPDEDIKLLS 319 (800)
T ss_dssp HHH-TTTSCS------CCHHHHHTTGGGCSCHHHHHHHHHHHHHT------GGGCCCHHHHHHHHHHHTTCSSHHHHHHH
T ss_pred HHH-HhCChh------HHHHHHHHhhcCCCCeeehhhhHHHHHHH------HHHHHHHHHHHHHHHhhcCCcccHHHHHH
Confidence 988 543332 33444555555666778888888888887 11111 24567788888899999999999
Q ss_pred HHHHHHhccCCCCchhhhhcCCcHHHHHHhhh----cccchHHHHHHHHHHHHhhCChhhhHHHhhccCcHHHHHHHhcc
Q 017249 172 VTALHYLSTCKENSSPILDATAVPPLINLLKD----CKKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVED 247 (375)
Q Consensus 172 ~~~L~~L~~~~~~~~~i~~~g~i~~Lv~ll~~----~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~ 247 (375)
+.+|..++ .+ +.++.++.++.+ -++-..-.......|..|+..+.. .......+|.|.+++++
T Consensus 320 AetLiPIA-~p---------~~l~~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~---a~~dp~LVPRL~PFLRH 386 (800)
T 3oc3_A 320 AELLCHFP-IT---------DSLDLVLEKCWKNIESEELISVSKTSNLSLLTKIYRENPE---LSIPPERLKDIFPCFTS 386 (800)
T ss_dssp HHHHTTSC-CS---------STHHHHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTT---CCCCSGGGGGTGGGGTC
T ss_pred HHHhhhhc-ch---------hhHHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCcc---cccChHHHHHHHhhhcC
Confidence 99999888 22 234444444332 211111123455667777765532 11245789999999999
Q ss_pred CChHHHHHHHHHHHHhcccCcHHHHHHHHHcCChHHHHH-HhhhCCHHHHHHHHHHHH
Q 017249 248 GSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLR-LTVEGTFEAQERARTLLD 304 (375)
Q Consensus 248 ~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~g~v~~L~~-ll~~~~~~~~~~A~~~L~ 304 (375)
.-+.+|..++.+|..+. . .. ++..+.+ ++-+.++++++.+..+..
T Consensus 387 tITSVR~AVL~TL~tfL--~-~~---------~LRLIFQNILLE~neeIl~lS~~VWk 432 (800)
T 3oc3_A 387 PVPEVRTSILNMVKNLS--E-ES---------IDFLVAEVVLIEEKDEIREMAIKLLK 432 (800)
T ss_dssp SSHHHHHHHHHHTTTCC--C-HH---------HHHHHHHHHHHCSCHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHH--h-hh---------HHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 99999999999998887 1 11 2333333 666788888888888775
No 93
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=96.99 E-value=0.094 Score=54.44 Aligned_cols=220 Identities=11% Similarity=0.038 Sum_probs=127.5
Q ss_pred HHHHHHHH-hcCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhC-CCCHHHHHHHHHHHHHhhccC----
Q 017249 26 LIEELSDK-LINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLV-SPNLDAIESSLLALLNLAVRN---- 99 (375)
Q Consensus 26 ~l~~Lv~~-L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~-~~~~~~~~~a~~~L~~L~~~~---- 99 (375)
.+..++.. ..+++++.+..|-..|.++-..+ ++...+..+|. +.+..+|..|+..|.+.....
T Consensus 25 ~l~~~l~~l~~~~~~~~r~~A~~~L~~~~~~p-----------~~~~~~~~lL~~~~~~~vr~~aa~~L~~~i~~~w~~l 93 (963)
T 2x19_B 25 NVEKALHQLYYDPNIENKNLAQKWLMQAQVSP-----------QAWHFSWQLLQPDKVPEIQYFGASALHIKISRYWSDI 93 (963)
T ss_dssp HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHST-----------THHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHCGGGS
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCH-----------HHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhCHHhC
Confidence 35555555 44688999999888887765544 34556666664 457899999999999876432
Q ss_pred -hhhHHHHHHcCChHHHHHhhcCCChHHHHHHHHHHHHhhccCCChhHHHhcCChHHHHHHhcc-----CCHHHHHHHHH
Q 017249 100 -ERNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHS-----GSVQGRVDAVT 173 (375)
Q Consensus 100 -~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~l~~L~~lL~~-----~~~~~~~~a~~ 173 (375)
++.+..+.+ ..++.+... .+.++.++...+.++..++..+-.. ...+.++.|+..+++ ++......++.
T Consensus 94 ~~~~~~~ir~-~ll~~l~~~-~~~~~~ir~kl~~~la~i~~~~~p~---~Wp~~l~~l~~~~~~~~~~~~~~~~~~~~l~ 168 (963)
T 2x19_B 94 PTDQYESLKA-QLFTQITRF-ASGSKIVLTRLCVALASLALSMMPD---AWPCAVADMVRLFQAEDSPVDGQGRCLALLE 168 (963)
T ss_dssp CGGGHHHHHH-HHHHHHHHT-TTSCHHHHHHHHHHHHHHHHHHTTT---TSTTHHHHHHHHHCC------CHHHHHHHHH
T ss_pred CHHHHHHHHH-HHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHhCcc---ccchHHHHHHHHHhhhccCCCcHHHHHHHHH
Confidence 233333333 233344432 1235788989999999988752111 146788899998876 25556777777
Q ss_pred HHHHhccC-CCC-----c-hhhhh--cCCcHHHH----HHhhhcccchHHHHHHHHHHHHhhCChhhhHHHhhccCcHHH
Q 017249 174 ALHYLSTC-KEN-----S-SPILD--ATAVPPLI----NLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGILT 240 (375)
Q Consensus 174 ~L~~L~~~-~~~-----~-~~i~~--~g~i~~Lv----~ll~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~ 240 (375)
+|..++.. .+. + ..+.+ ...++.++ .++........+...++.++......... +......++.
T Consensus 169 iL~~l~ee~~~~~~~~~~r~~~~~~l~~~~~~i~~ll~~~l~~~~~~~~~~~~~l~~l~~wi~~~~~---~~~~~~ll~~ 245 (963)
T 2x19_B 169 LLTVLPEEFQTSRLPQYRKGLVRTSLAVECGAVFPLLEQLLQQPSSPSCVRQKVLKCFSSWVQLEVP---LQDCEALIQA 245 (963)
T ss_dssp HHHHHHHHHTTCCC---------CCSGGGHHHHHHHHHHHHSCTTCCHHHHHHHHHHHHHHHTSSCC---GGGTHHHHHH
T ss_pred HHHhCHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHcCCCC---cccchHHHHH
Confidence 77777631 000 1 11100 12234444 34433322223556666666443321111 1112345666
Q ss_pred HHHHhccCChHHHHHHHHHHHHhccc
Q 017249 241 LVETVEDGSLVSTQHAVGALLSLCQS 266 (375)
Q Consensus 241 Lv~lL~~~~~~~~~~a~~~L~~l~~~ 266 (375)
++..+. ++..+..|+.++..+...
T Consensus 246 l~~~l~--~~~~~~~a~~~l~~i~~~ 269 (963)
T 2x19_B 246 AFAALQ--DSELFDSSVEAIVNAISQ 269 (963)
T ss_dssp HHHHTT--STTTHHHHHHHHHHHHTC
T ss_pred HHHHhC--CchHHHHHHHHHHHHHcc
Confidence 666664 466888999999988774
No 94
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=96.93 E-value=0.024 Score=49.21 Aligned_cols=179 Identities=15% Similarity=0.144 Sum_probs=122.1
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHH----hhCCCCHHHHHHHHHHHHHhhccC--
Q 017249 26 LIEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVL----MLVSPNLDAIESSLLALLNLAVRN-- 99 (375)
Q Consensus 26 ~l~~Lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~----~L~~~~~~~~~~a~~~L~~L~~~~-- 99 (375)
.=+.+...|-+.|...+..++..|....... ++ ..+. .++.+++ .+.+.+..+...++..|..+...-
T Consensus 47 ~~~~~~~~lfs~d~k~~~~ale~L~~~l~~~-~~--~~~~---~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~ 120 (266)
T 2of3_A 47 AKVSLMSQLFHKDFKQHLAALDSLVRLADTS-PR--SLLS---NSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRD 120 (266)
T ss_dssp BCHHHHHHHTCSCHHHHHHHHHHHHHHHHHC-HH--HHHH---THHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHhcCCCHHHHHHHHHHHHHHhhhC-hH--HHHH---HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHh
Confidence 4456777777889999999999998887665 22 2221 2333333 344778889888888888875310
Q ss_pred hhhHHHHHH-cCChHHHHHhhcCCChHHHHHHHHHHHHhhccCCChhHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHh
Q 017249 100 ERNKVKIAT-AGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYL 178 (375)
Q Consensus 100 ~~~r~~i~~-~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~~L 178 (375)
..++-.-.+ .-.+|.|+.-+.++.+.+|..+-.++..+... .-....++.+++-+++.|...+..++..+..+
T Consensus 121 ~~y~~~~~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v------~~~~~v~~~l~~g~ksKN~R~R~e~l~~l~~l 194 (266)
T 2of3_A 121 TETPMSQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDV------VGPLKMTPMLLDALKSKNARQRSECLLVIEYY 194 (266)
T ss_dssp TTCCCCHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHH------HCHHHHHHHHHHGGGCSCHHHHHHHHHHHHHH
T ss_pred ccccchHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHH------CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHH
Confidence 111111112 33579999999999999999988888777532 11234577888889999999999999999888
Q ss_pred ccCCCCchhhhhcCCc---HHHHHHhhhcccchHHHHHHHHHHHHhh
Q 017249 179 STCKENSSPILDATAV---PPLINLLKDCKKYSKFAEKATALLEILS 222 (375)
Q Consensus 179 ~~~~~~~~~i~~~g~i---~~Lv~ll~~~~~~~~~~~~a~~~L~~l~ 222 (375)
-...... ...++ +.+.+++.+. +..++..|+.++..+-
T Consensus 195 i~~~G~~----~~~~l~~~~~ia~ll~D~--d~~VR~aAl~~lve~y 235 (266)
T 2of3_A 195 ITNAGIS----PLKSLSVEKTVAPFVGDK--DVNVRNAAINVLVACF 235 (266)
T ss_dssp HHHHCSG----GGGGGCHHHHHGGGGGCS--SHHHHHHHHHHHHHHH
T ss_pred HHhcCCC----ccccccchHHHHHHHcCC--CHHHHHHHHHHHHHHH
Confidence 6432221 12367 8888888875 5578888888776443
No 95
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=96.72 E-value=0.17 Score=52.70 Aligned_cols=253 Identities=12% Similarity=0.032 Sum_probs=138.5
Q ss_pred HHHHHHHHHHHHHHhhCChhh-HHHHHh---------cCChHHHHHhhCC-----CCHHHHHHHHHHHHHhhcc------
Q 017249 40 ETKIEAARDIRKVVKKSSLKT-RSEFAA---------AGVVQPLVLMLVS-----PNLDAIESSLLALLNLAVR------ 98 (375)
Q Consensus 40 ~~~~~a~~~l~~l~~~~~~~~-~~~~~~---------~g~v~~Lv~~L~~-----~~~~~~~~a~~~L~~L~~~------ 98 (375)
+.....++.+..++... ... .+.+.+ ...++.++.+... .+.++...++..+..++..
T Consensus 311 ~~~~~l~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~ 389 (971)
T 2x1g_F 311 DIIVHIYMLFVSSVERH-STLLLSGITSADPELSILVHRIVQEILHCTDKPGIYPVEESCSTMALAFWYMLQDEVFAMSN 389 (971)
T ss_dssp HHHHHHHHHHHHHHHHT-HHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHCSSCTTTTCTTHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHhccCcccccHHHHHHHHHHHHHHcCCCCCCcchhhhHHHHHHHHHHHHHHHhccc
Confidence 56666677777766543 211 100000 1345555655533 3567888888887776541
Q ss_pred ---ChhhHHHHHH--cCChHHHHHhhcCCCh---------------HHHHHHHHHHHHhhccCCChhHHHhcCChHHHHH
Q 017249 99 ---NERNKVKIAT--AGAIPPLVELLKFQNG---------------TLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQ 158 (375)
Q Consensus 99 ---~~~~r~~i~~--~g~i~~Lv~lL~~~~~---------------~~~~~a~~~L~~Ls~~~~~~~~i~~~~~l~~L~~ 158 (375)
.+..+..+.. ...++.++..+..++. ..|..+..+|..++..-. ...+ .-.++.+-.
T Consensus 390 ~~~~~~~~~~~~~~~~~ll~~l~~~~~~p~~~~~~~~d~~e~~~f~~~R~~~~~~l~~~~~~~~-~~~l--~~~~~~l~~ 466 (971)
T 2x1g_F 390 DEQKHKCWEYIKPLYAHLTRILVRKSEQPDEKSLAKWSSDDLECFRCYRQDISDTFMYCYDVLN-DYIL--EILAAMLDE 466 (971)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHTSCCCTTTTSCSCHHHHHHHHHHHHHHHHHHHHHHTTCT-THHH--HHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHhcCCCcccccccCHhHHHHHHHHHHHHHHHHHHHHHHHh-HHHH--HHHHHHHHH
Confidence 1111111111 2334555555532211 345666667777665332 1111 112233333
Q ss_pred Hhcc-----CCHHHHHHHHHHHHHhccCCCCchhhhhcCCcHHHHHHhhh---cccchHHHHHHHHHHHHhhCChhhhHH
Q 017249 159 ILHS-----GSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKD---CKKYSKFAEKATALLEILSSSEEGRIA 230 (375)
Q Consensus 159 lL~~-----~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~ll~~---~~~~~~~~~~a~~~L~~l~~~~~~~~~ 230 (375)
.+.+ .+...++.++.++..++....... ...++.++.++.. .+.++.++..++++++.++..-.....
T Consensus 467 ~l~~~~~~~~~w~~~eaal~~l~~iae~~~~~~----~~~l~~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~ 542 (971)
T 2x1g_F 467 AIADLQRHPTHWTKLEACIYSFQSVAEHFGGEE----KRQIPRLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMENPA 542 (971)
T ss_dssp HHHHHHHCTTCCHHHHHHHHHHHHTTTC----------CHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC----
T ss_pred HHHhccCCCCcHHHHHHHHHHHHHHHhhcChhh----hHHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCHH
Confidence 3433 456788999999999986532111 1234444444321 122567888899999988743111112
Q ss_pred HhhccCcHHHHHHHhccCChHHHHHHHHHHHHhcccCcHHHHHHHHH--cCChHHHHHHhhh--CCHHHHHHHHHHHHHh
Q 017249 231 ITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILK--EGAIPGLLRLTVE--GTFEAQERARTLLDLL 306 (375)
Q Consensus 231 ~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~--~g~v~~L~~ll~~--~~~~~~~~A~~~L~~l 306 (375)
.+ ...++.|+..| + +.++..|++++.++|.... ..+.. ..++..|..++.. .+...+..+..++..+
T Consensus 543 ~l--~~vl~~l~~~l-~--~~v~~~A~~al~~l~~~~~----~~l~p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i 613 (971)
T 2x1g_F 543 YI--PPAINLLVRGL-N--SSMSAQATLGLKELCRDCQ----LQLKPYADPLLNACHASLNTGRMKNSDSVRLMFSIGKL 613 (971)
T ss_dssp CH--HHHHHHHHHHH-H--SSCHHHHHHHHHHHHHHCH----HHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHH
T ss_pred HH--HHHHHHHHHHh-C--hHHHHHHHHHHHHHHHHHH----HhccccHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHH
Confidence 22 24566677777 3 6789999999999997653 23332 4567777777776 3578888888888888
Q ss_pred hcC
Q 017249 307 RDT 309 (375)
Q Consensus 307 ~~~ 309 (375)
...
T Consensus 614 ~~~ 616 (971)
T 2x1g_F 614 MSL 616 (971)
T ss_dssp HHT
T ss_pred HHh
Confidence 664
No 96
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=96.66 E-value=0.0021 Score=55.48 Aligned_cols=179 Identities=17% Similarity=0.080 Sum_probs=93.1
Q ss_pred HhcCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhccChhhHHHHHHcCCh
Q 017249 33 KLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIESSLLALLNLAVRNERNKVKIATAGAI 112 (375)
Q Consensus 33 ~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i 112 (375)
++.++++.++..++..+ . ...|..++.++++.++..++..| . .
T Consensus 58 ll~d~~~~VR~~AA~~l------~-------------~~~l~~L~~D~~~~VR~~aA~~L---~---------------~ 100 (244)
T 1lrv_A 58 YLADPFWERRAIAVRYS------P-------------VEALTPLIRDSDEVVRRAVAYRL---P---------------R 100 (244)
T ss_dssp GTTCSSHHHHHHHHTTS------C-------------GGGGGGGTTCSSHHHHHHHHTTS---C---------------S
T ss_pred HhcCCCHHHHHHHHHhC------C-------------HHHHHHHccCcCHHHHHHHHHHC---C---------------H
Confidence 44677888887777642 1 22356667777777777777532 1 1
Q ss_pred HHHHHhhcCCChHHHHHHHHHHHHhhccCCChhHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCCCCchhhhhcC
Q 017249 113 PPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTCKENSSPILDAT 192 (375)
Q Consensus 113 ~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g 192 (375)
+.|..+++++++.+|..++.. +. .+.|..++++++..++..++.. +.
T Consensus 101 ~~L~~ll~D~d~~VR~~aA~~---l~--------------~~~L~~L~~D~d~~VR~~aA~~---l~------------- 147 (244)
T 1lrv_A 101 EQLSALMFDEDREVRITVADR---LP--------------LEQLEQMAADRDYLVRAYVVQR---IP------------- 147 (244)
T ss_dssp GGGGGTTTCSCHHHHHHHHHH---SC--------------TGGGGGGTTCSSHHHHHHHHHH---SC-------------
T ss_pred HHHHHHHcCCCHHHHHHHHHh---CC--------------HHHHHHHHcCCCHHHHHHHHHh---cC-------------
Confidence 356666777777777666653 21 1234555666777777766652 11
Q ss_pred CcHHHHHHhhhcccchHHHHHHHHHHHHhhCChhhhHHHhhccCcHHHHHHHhccCChHHHHHHHHHH-----HHhcccC
Q 017249 193 AVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGAL-----LSLCQSC 267 (375)
Q Consensus 193 ~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L-----~~l~~~~ 267 (375)
.+.+..++.+. +..++..+... +. .+.+..++.+++..++..++..+ ..+..+.
T Consensus 148 -~~~l~~l~~D~--d~~VR~~aa~~---l~---------------~~ll~~ll~D~d~~VR~aaa~~l~~~~L~~Ll~D~ 206 (244)
T 1lrv_A 148 -PGRLFRFMRDE--DRQVRKLVAKR---LP---------------EESLGLMTQDPEPEVRRIVASRLRGDDLLELLHDP 206 (244)
T ss_dssp -GGGGGGTTTCS--CHHHHHHHHHH---SC---------------GGGGGGSTTCSSHHHHHHHHHHCCGGGGGGGGGCS
T ss_pred -HHHHHHHHcCC--CHHHHHHHHHc---CC---------------HHHHHHHHcCCCHHHHHHHHHhCCHHHHHHHHcCC
Confidence 11222233332 33455444332 10 12222344555556665555432 2223333
Q ss_pred cHHHHHHHHHcCChHHHHHHhhhCCHHHHHHHHHHH
Q 017249 268 RDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLL 303 (375)
Q Consensus 268 ~~~~~~~l~~~g~v~~L~~ll~~~~~~~~~~A~~~L 303 (375)
.+..+..+.+.-..+.|..+ .+.++.|++.|...|
T Consensus 207 d~~VR~~aa~~l~~~~L~~L-~D~~~~VR~aa~~~L 241 (244)
T 1lrv_A 207 DWTVRLAAVEHASLEALREL-DEPDPEVRLAIAGRL 241 (244)
T ss_dssp SHHHHHHHHHHSCHHHHHHC-CCCCHHHHHHHHCCC
T ss_pred CHHHHHHHHHcCCHHHHHHc-cCCCHHHHHHHHHHh
Confidence 34444444443334555555 777778877776543
No 97
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=96.65 E-value=0.11 Score=54.07 Aligned_cols=294 Identities=10% Similarity=0.056 Sum_probs=155.4
Q ss_pred CCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhccChhhHHHHHH--cCChHH
Q 017249 37 GDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIESSLLALLNLAVRNERNKVKIAT--AGAIPP 114 (375)
Q Consensus 37 ~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~~~~~~~~~a~~~L~~L~~~~~~~r~~i~~--~g~i~~ 114 (375)
.++.++..+++++..++..- ..+...+ ..+++.|+..|. +.++..|+.++.+++.+ ++..+.. ...+..
T Consensus 518 ~~~~vr~~a~~~l~~~~~~l-~~~~~~l--~~vl~~l~~~l~---~~v~~~A~~al~~l~~~---~~~~l~p~~~~ll~~ 588 (971)
T 2x1g_F 518 LNVKLLGTALETMGSYCNWL-MENPAYI--PPAINLLVRGLN---SSMSAQATLGLKELCRD---CQLQLKPYADPLLNA 588 (971)
T ss_dssp SCHHHHHHHHHHHHHTHHHH-C----CH--HHHHHHHHHHHH---SSCHHHHHHHHHHHHHH---CHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHH-hcCHHHH--HHHHHHHHHHhC---hHHHHHHHHHHHHHHHH---HHHhccccHHHHHHH
Confidence 37889999999999998653 1221111 134666777773 67899999999999964 3344432 345566
Q ss_pred HHHhhcCC--ChHHHHHHHHHHHHhhccCC--ChhHHHhcCChHHHHHHh----ccC--CHHHHHHHHHHHHHhc---cC
Q 017249 115 LVELLKFQ--NGTLRELAAAAILTLSAAAP--NKPAIAASGAAPLLVQIL----HSG--SVQGRVDAVTALHYLS---TC 181 (375)
Q Consensus 115 Lv~lL~~~--~~~~~~~a~~~L~~Ls~~~~--~~~~i~~~~~l~~L~~lL----~~~--~~~~~~~a~~~L~~L~---~~ 181 (375)
|..++.++ +...+..+..++..++..-+ .+... -...+++++..+ ... +.........++..|+ ..
T Consensus 589 l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~~~~~~~~-~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~ 667 (971)
T 2x1g_F 589 CHASLNTGRMKNSDSVRLMFSIGKLMSLLRPEEIPKY-LDIIVSPCFEELQAICQADSKTPAARIRTIFRLNMISTLFSS 667 (971)
T ss_dssp HHHHHHSTTSCHHHHHHHHHHHHHHHHTSCTTHHHHH-HHHHHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCCChHHHHHHHHHHHHHHHhCCHHHHHHH-HHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHhh
Confidence 67777764 57788888899988876422 11111 123334444433 322 2222333333333332 21
Q ss_pred --C---CC------chhh--hhcCCcHHHHHHhhhcccchHHHHHHHHHHHHhhCChhhhHHHhhccCcHHHHHHHh---
Q 017249 182 --K---EN------SSPI--LDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETV--- 245 (375)
Q Consensus 182 --~---~~------~~~i--~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~Lv~lL--- 245 (375)
+ +. ...+ +....++.+..++.....+..+.+.++++++.++..-.. .+ ...++.+++++
T Consensus 668 l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~v~e~~~~~~~~~~~~~~~--~~---~p~l~~~~~~l~~~ 742 (971)
T 2x1g_F 668 LNTDVDEQATDQPIVQPVLLVMQRTMPIFKRIAEMWVEEIDVLEAACSAMKHAITNLRS--SF---QPMLQDLCLFIVAS 742 (971)
T ss_dssp HTC-------------CCHHHHHTTHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHC-------CTHHHHHHHHHHHH
T ss_pred cCCCcCcccccccCCCchHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhh--hc---cccHHHHHHHHHHH
Confidence 1 00 0111 224678888888765433557889999999987643211 11 12355555554
Q ss_pred -ccCChHHHHHHHHHHHHhcccCc--HHHHHHHHH--cCChHHHHHHhhh-------CCHHHHHHHHHHHHHhhcCChhh
Q 017249 246 -EDGSLVSTQHAVGALLSLCQSCR--DKYRQLILK--EGAIPGLLRLTVE-------GTFEAQERARTLLDLLRDTPQEK 313 (375)
Q Consensus 246 -~~~~~~~~~~a~~~L~~l~~~~~--~~~~~~l~~--~g~v~~L~~ll~~-------~~~~~~~~A~~~L~~l~~~~~~~ 313 (375)
..... ..+++.+..++..-. +.....+.+ ...+...+.++.. .+|++++.....+..+..+.+..
T Consensus 743 ~~~~~~---~~~l~l~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~pd~~~~~f~ll~~~l~~~p~~ 819 (971)
T 2x1g_F 743 FQTRCC---APTLEISKTAIVMFFKDEGCKPLMQQLLREFIQHSFKLFESTPEQNFSNISDTMETFFGCLTQIIKKIPQV 819 (971)
T ss_dssp CC--CC---HHHHHHHHHHHTTCCC-----HHHHHHHHHHHHHHHHHHTSCTTTHHHHTHHHHHHHHHHHHHHHHSSGGG
T ss_pred HhcCCc---hHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHhcccccCCccCchHHHHHHHHHHHHHHhCcHH
Confidence 32221 346666666655321 122222222 1233333443332 37889999999888888777665
Q ss_pred hhhhhh-HHHH----HHHHhhcCCChHHHHHHHHHHHHHHHHH
Q 017249 314 RLSSSV-LEKI----VYDIAARVDGADKAAETAKRLLQDMVQR 351 (375)
Q Consensus 314 ~~~~g~-~~~l----~~~l~~~~~g~~~~~~~a~~~l~~l~~~ 351 (375)
++.... ++.+ +..|.. ..+.+...+...+..++..
T Consensus 820 ~~~s~~~l~~i~~~~~~~l~~---~~~~~~~s~~~fl~~~i~~ 859 (971)
T 2x1g_F 820 LEDKTLAYDRLVFYAQRGMTL---PESGAIRNSIQFLTHFVMQ 859 (971)
T ss_dssp GGCTTSCHHHHHHHHHHHHTS---SCSSHHHHHHHHHHHHHHH
T ss_pred HcCCcccHHHHHHHHHHHcCC---CCHHHHHHHHHHHHHHHhc
Confidence 543333 3333 333331 1133444555566665544
No 98
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=96.53 E-value=0.02 Score=54.52 Aligned_cols=244 Identities=16% Similarity=0.126 Sum_probs=149.5
Q ss_pred ChHHHHHhhCCCCHHHHHHHHHHHHHhhccChhhHHHHHHc--CChHHHHHhh--c-------C-CChHHHHHHHHHHHH
Q 017249 69 VVQPLVLMLVSPNLDAIESSLLALLNLAVRNERNKVKIATA--GAIPPLVELL--K-------F-QNGTLRELAAAAILT 136 (375)
Q Consensus 69 ~v~~Lv~~L~~~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~--g~i~~Lv~lL--~-------~-~~~~~~~~a~~~L~~ 136 (375)
..+.|+.-|-++..++|.-|+-+|+.+.+............ ...-.|+.++ . + --..+|+.++++|..
T Consensus 175 fcE~L~~DLFdp~WEiRHGAALGLREILR~hG~GAGR~~~~N~DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQtLGa 254 (800)
T 3oc3_A 175 FFEQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQIRVDSKLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYLLSR 254 (800)
T ss_dssp TTHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC----CCCCCCTTHHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCcchhhhhHHHHHHHHHHHHhccCCceeccccHHHHHHHHHHHHhccccccccCeeeeehHHHHHHHHHH
Confidence 46677788888999999999999999875432110000011 2223333333 1 1 136799999999999
Q ss_pred hhccCCChhHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCCCCchhhhhcCCcHHHHHHhhhcccchHHHHHHHH
Q 017249 137 LSAAAPNKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATA 216 (375)
Q Consensus 137 Ls~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~ 216 (375)
+ .+-+.. ..++..|+..+..+.-+++..++..|.++. +.... -.++++.++.-|.+. +++++..|..
T Consensus 255 L-~hLp~e-----~~IL~qLV~~l~~~~WEVRHGGLLGLKYL~---DLL~~--Ld~Vv~aVL~GL~D~--DDDVRAVAAe 321 (800)
T 3oc3_A 255 I-YPLIGP-----NDIIEQLVGFLDSGDWQVQFSGLIALGYLK---EFVED--KDGLCRKLVSLLSSP--DEDIKLLSAE 321 (800)
T ss_dssp H-TTTSCS-----CCHHHHHTTGGGCSCHHHHHHHHHHHHHTG---GGCCC--HHHHHHHHHHHTTCS--SHHHHHHHHH
T ss_pred H-HhCChh-----HHHHHHHHhhcCCCCeeehhhhHHHHHHHH---HHHHH--HHHHHHHHHhhcCCc--ccHHHHHHHH
Confidence 9 553322 344555555557778899999999999991 11111 134566666666665 4578888888
Q ss_pred HHHHhhCChhhhHHHhhccCcHHHHHHHhccCC--hHHHHHHHHHHHHhcccCcHHHHHHHHHcCChHHHHHHhhhCCHH
Q 017249 217 LLEILSSSEEGRIAITNSDGGILTLVETVEDGS--LVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFE 294 (375)
Q Consensus 217 ~L~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~--~~~~~~a~~~L~~l~~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~ 294 (375)
+|.-++ .+.. + ...+..+...|.+-+ .......+..|..|+.... . .-.....+|.|..++++.-+.
T Consensus 322 tLiPIA-~p~~----l--~~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~-~---a~~dp~LVPRL~PFLRHtITS 390 (800)
T 3oc3_A 322 LLCHFP-ITDS----L--DLVLEKCWKNIESEELISVSKTSNLSLLTKIYRENP-E---LSIPPERLKDIFPCFTSPVPE 390 (800)
T ss_dssp HHTTSC-CSST----H--HHHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCT-T---CCCCSGGGGGTGGGGTCSSHH
T ss_pred Hhhhhc-chhh----H--HHHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCc-c---cccChHHHHHHHhhhcCCcHH
Confidence 888777 2211 1 234455556664322 2233456667777776652 1 112247899999999999999
Q ss_pred HHHHHHHHHHHhhcCChhhhhhhhhHHHHHHHHhhcCCChHHHHHHHHHHHH
Q 017249 295 AQERARTLLDLLRDTPQEKRLSSSVLEKIVYDIAARVDGADKAAETAKRLLQ 346 (375)
Q Consensus 295 ~~~~A~~~L~~l~~~~~~~~~~~g~~~~l~~~l~~~~~g~~~~~~~a~~~l~ 346 (375)
||..+..+|..+. ...++.-+...+.. ...+..++.+.++.+
T Consensus 391 VR~AVL~TL~tfL--------~~~~LRLIFQNILL--E~neeIl~lS~~VWk 432 (800)
T 3oc3_A 391 VRTSILNMVKNLS--------EESIDFLVAEVVLI--EEKDEIREMAIKLLK 432 (800)
T ss_dssp HHHHHHHHTTTCC--------CHHHHHHHHHHHHH--CSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH--------hhhHHHHHHHHHHh--CCcHHHHHHHHHHHH
Confidence 9999999987776 11233333333332 223677777777664
No 99
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=96.49 E-value=0.033 Score=48.36 Aligned_cols=182 Identities=8% Similarity=0.053 Sum_probs=116.5
Q ss_pred HHHHHhhcCCChHHHHHHHHHHHHhhccCCChhHHHhc-CChHHHHHHhccCCHHHHHHHHHHHHHhccC---CCCchhh
Q 017249 113 PPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAAS-GAAPLLVQILHSGSVQGRVDAVTALHYLSTC---KENSSPI 188 (375)
Q Consensus 113 ~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~-~~l~~L~~lL~~~~~~~~~~a~~~L~~L~~~---~~~~~~i 188 (375)
+.+...|.+.+..-+..++..|.......+ ...+... ..++.+.-.+.+.+..+...++.+|..+... .+..-.-
T Consensus 49 ~~~~~~lfs~d~k~~~~ale~L~~~l~~~~-~~~~~~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~ 127 (266)
T 2of3_A 49 VSLMSQLFHKDFKQHLAALDSLVRLADTSP-RSLLSNSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPMSQ 127 (266)
T ss_dssp HHHHHHHTCSCHHHHHHHHHHHHHHHHHCH-HHHHHTHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCCH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhhhCh-HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccchH
Confidence 355666666677777777777766543211 1111111 1233333344577888888888887776421 1111111
Q ss_pred hh-cCCcHHHHHHhhhcccchHHHHHHHHHHHHhhCChhhhHHHhhccCcHHHHHHHhccCChHHHHHHHHHHHHhcccC
Q 017249 189 LD-ATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSC 267 (375)
Q Consensus 189 ~~-~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~ 267 (375)
.+ .-.+|.|+.-+.++ .+.+++.+-.++..++. +......++.++.-+.+.+...++.++..+..+....
T Consensus 128 ~ea~~~lP~LveKlGd~--k~~vR~~~r~il~~l~~-------v~~~~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~ 198 (266)
T 2of3_A 128 EEVSAFVPYLLLKTGEA--KDNMRTSVRDIVNVLSD-------VVGPLKMTPMLLDALKSKNARQRSECLLVIEYYITNA 198 (266)
T ss_dssp HHHHHHHHHHHHGGGCS--SHHHHHHHHHHHHHHHH-------HHCHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCC--hHHHHHHHHHHHHHHHH-------HCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHhc
Confidence 11 23678888777655 44677877777776652 1212346677778888889999999999999886543
Q ss_pred cHHHHHHHHHcCCh---HHHHHHhhhCCHHHHHHHHHHHHHhhcCC
Q 017249 268 RDKYRQLILKEGAI---PGLLRLTVEGTFEAQERARTLLDLLRDTP 310 (375)
Q Consensus 268 ~~~~~~~l~~~g~v---~~L~~ll~~~~~~~~~~A~~~L~~l~~~~ 310 (375)
+.. ....+ +.+..++.+.|..+|..|..++..+..+.
T Consensus 199 G~~------~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~~ 238 (266)
T 2of3_A 199 GIS------PLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFKFE 238 (266)
T ss_dssp CSG------GGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHHHH
T ss_pred CCC------ccccccchHHHHHHHcCCCHHHHHHHHHHHHHHHHHh
Confidence 211 24578 99999999999999999999888776554
No 100
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=96.39 E-value=0.16 Score=45.20 Aligned_cols=222 Identities=14% Similarity=0.074 Sum_probs=151.1
Q ss_pred HHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhccChhhH----HHHHH-cCChHHHHHhhcCCChHHHHHHHHHHHHhh
Q 017249 64 FAAAGVVQPLVLMLVSPNLDAIESSLLALLNLAVRNERNK----VKIAT-AGAIPPLVELLKFQNGTLRELAAAAILTLS 138 (375)
Q Consensus 64 ~~~~g~v~~Lv~~L~~~~~~~~~~a~~~L~~L~~~~~~~r----~~i~~-~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls 138 (375)
+...+.+..|+..|..=+.+.++.+..+..++.......+ ..+.. ...+..|+.-.+ ++++--.+-..|+...
T Consensus 74 i~~~dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~peil~~L~~gYe--~~diAl~~G~mLReci 151 (341)
T 1upk_A 74 LYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYE--SPEIALNCGIMLRECI 151 (341)
T ss_dssp HHHHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGG--STTTHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHcCHHHHHHHHHhhc--cchhHhHHHHHHHHHH
Confidence 4456889999999998899999999999999887654332 22222 222333333332 3444445555667776
Q ss_pred ccCCChhHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhcc-CCCCchhhhhc---CCcHHHHHHhhhcccchHHHHHH
Q 017249 139 AAAPNKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLST-CKENSSPILDA---TAVPPLINLLKDCKKYSKFAEKA 214 (375)
Q Consensus 139 ~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~~L~~-~~~~~~~i~~~---g~i~~Lv~ll~~~~~~~~~~~~a 214 (375)
.++.....+...+.+..+.+.+..++-++...|..++..|-. +.......... ..+...-+++.+++. .+++.+
T Consensus 152 r~e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NY--VTkRQS 229 (341)
T 1upk_A 152 RHEPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENY--VTKRQS 229 (341)
T ss_dssp TSHHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSH--HHHHHH
T ss_pred HhHHHHHHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcc--hhHHHH
Confidence 666666666667778888899999999999999999987653 33333333332 456677788887753 577889
Q ss_pred HHHHHHhhCChhhhHHHhh---ccCcHHHHHHHhccCChHHHHHHHHHHHHhcccCc--HHHHHHHHHc--CChHHHHHH
Q 017249 215 TALLEILSSSEEGRIAITN---SDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCR--DKYRQLILKE--GAIPGLLRL 287 (375)
Q Consensus 215 ~~~L~~l~~~~~~~~~~~~---~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~--~~~~~~l~~~--g~v~~L~~l 287 (375)
+..|+.|-.+..+...+.. +..-+..++.+|++.+..+|-+|..++--+..+.+ +.....+... ..+.-|-.+
T Consensus 230 lKLLgelLldr~N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVANP~K~~~I~~IL~~Nr~kLl~fl~~f 309 (341)
T 1upk_A 230 LKLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANPNKTQPILDILLKNQAKLIEFLSKF 309 (341)
T ss_dssp HHHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCSSCCHHHHHHHHHTHHHHHHHHHHT
T ss_pred HHHHHHHHhCchHHHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeeeCCCCChHHHHHHHHHHHHHHHHHHhC
Confidence 9999999888777665553 34557788899999999999999999988887643 3444444442 244444443
Q ss_pred hh
Q 017249 288 TV 289 (375)
Q Consensus 288 l~ 289 (375)
..
T Consensus 310 ~~ 311 (341)
T 1upk_A 310 QN 311 (341)
T ss_dssp TT
T ss_pred CC
Confidence 33
No 101
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=96.36 E-value=0.51 Score=44.12 Aligned_cols=130 Identities=18% Similarity=0.169 Sum_probs=98.2
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhccChhhHHHH
Q 017249 27 IEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIESSLLALLNLAVRNERNKVKI 106 (375)
Q Consensus 27 l~~Lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~~~~~~~~~a~~~L~~L~~~~~~~r~~i 106 (375)
...++.. .+++...+.-|+..|.++...- |+..+. ++..++.+..+++..+|.+|++.|-.+|.+ ++-..+
T Consensus 31 y~~Il~~-~kg~~k~K~LaaQ~I~kffk~F-P~l~~~-----Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~--~~i~ki 101 (507)
T 3u0r_A 31 YQVILDG-VKGGTKEKRLAAQFIPKFFKHF-PELADS-----AINAQLDLCEDEDVSIRRQAIKELPQFATG--ENLPRV 101 (507)
T ss_dssp HHHHHHG-GGSCHHHHHHHHHHHHHHGGGC-GGGHHH-----HHHHHHHHHTCSSHHHHHHHHHHGGGGCCT--TCHHHH
T ss_pred HHHHHHh-cCCCHHHHHHHHHHHHHHHhhC-hhhHHH-----HHHHHHHHHhcccHHHHHHHHHhhHHHhhh--hhhhhH
Confidence 3444443 3567999999999999999887 666664 478999999999999999999999999986 455454
Q ss_pred HHcCChHHHHHhhcCCChHHHHHHHHHHHHhhccCCChhHHHhcCChHHHHHHhccCCHHHHHHHHHHHHH
Q 017249 107 ATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHY 177 (375)
Q Consensus 107 ~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~~ 177 (375)
...|+++|...++.-....-.+|..|...++ .+.+..|...+..++..+++.++..|..
T Consensus 102 -----aDvL~QlLqtdd~~E~~~V~~sL~sllk~Dp-------k~tl~~lf~~i~~~~e~~Rer~lkFi~~ 160 (507)
T 3u0r_A 102 -----ADILTQLLQTDDSAEFNLVNNALLSIFKMDA-------KGTLGGLFSQILQGEDIVRERAIKFLST 160 (507)
T ss_dssp -----HHHHHHHTTCCCHHHHHHHHHHHHHHHHHCH-------HHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHhccchHHHHHHHHHHHHHHhcCh-------HHHHHHHHHHHcccchHHHHHHHHHHHH
Confidence 4589999998877666666667766644332 3556667776666788888888777754
No 102
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=96.35 E-value=0.11 Score=45.38 Aligned_cols=188 Identities=13% Similarity=0.062 Sum_probs=119.2
Q ss_pred hHHHHHhhCCCCHHHHHHHHHHHHHhhccChhh--HHHHHH--cCChHHHHHhhcCCChHHHHHHHHHHHHhhccCC---
Q 017249 70 VQPLVLMLVSPNLDAIESSLLALLNLAVRNERN--KVKIAT--AGAIPPLVELLKFQNGTLRELAAAAILTLSAAAP--- 142 (375)
Q Consensus 70 v~~Lv~~L~~~~~~~~~~a~~~L~~L~~~~~~~--r~~i~~--~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~--- 142 (375)
+| |-+.|.+.+...|..|+..|..+....+.. ...... ....+.+-..+.+.+..++..++.++..++..-.
T Consensus 12 lp-l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~ 90 (278)
T 4ffb_C 12 LP-LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSS 90 (278)
T ss_dssp CC-HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---
T ss_pred CC-HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhh
Confidence 44 668899999999999999998877643221 111111 2335566677888899999999999998876422
Q ss_pred C-hhHH--HhcCChHHHHH-HhccCCHHHHHHHHHHHHHhccCCCCchhhhhcCCcHHHHHHhhhcccchHHHHHHHHHH
Q 017249 143 N-KPAI--AASGAAPLLVQ-ILHSGSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALL 218 (375)
Q Consensus 143 ~-~~~i--~~~~~l~~L~~-lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L 218 (375)
. .... .....++.|+. .|.+....++..+..++..++........ +++.++..+.+. .+.++..++..|
T Consensus 91 ~~~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~~~-----~~e~l~~~l~~K--npkv~~~~l~~l 163 (278)
T 4ffb_C 91 LKNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSITQ-----SVELVIPFFEKK--LPKLIAAAANCV 163 (278)
T ss_dssp CCHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSSHH-----HHHHHGGGGGCS--CHHHHHHHHHHH
T ss_pred cccchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcHHH-----HHHHHHHHHhcc--CHHHHHHHHHHH
Confidence 1 1211 23456677775 47778888888888888777643222222 223444445443 456777777777
Q ss_pred HHhhCC--hh--hhHHHhhccCcHHHHHHHhccCChHHHHHHHHHHHHhcccC
Q 017249 219 EILSSS--EE--GRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSC 267 (375)
Q Consensus 219 ~~l~~~--~~--~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~ 267 (375)
..+... .. +.+..+ ..+++.+..++.+.++.+|..|..++..+...-
T Consensus 164 ~~~l~~fg~~~~~~k~~l--~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~~ 214 (278)
T 4ffb_C 164 YELMAAFGLTNVNVQTFL--PELLKHVPQLAGHGDRNVRSQTMNLIVEIYKVT 214 (278)
T ss_dssp HHHHHHHTTTTCCHHHHH--HHHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHhCCCcCCchhHH--HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHh
Confidence 765421 11 112222 135567778889999999999999998886654
No 103
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=96.35 E-value=0.7 Score=47.86 Aligned_cols=138 Identities=12% Similarity=0.111 Sum_probs=89.3
Q ss_pred ccCCHHHHHHHHHHHHHhccCCCCchhhhhcCCcHHHHHHhhh-cccchHHHHHHHHHHHHhhCChhhhHHHhhccCcHH
Q 017249 161 HSGSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKD-CKKYSKFAEKATALLEILSSSEEGRIAITNSDGGIL 239 (375)
Q Consensus 161 ~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~ll~~-~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~ 239 (375)
.+.+...++.++.++..++...... ....++.++..+.. ..+++.++..++++++.++..-......+ ...++
T Consensus 459 ~~~~w~~~eaal~al~~i~~~~~~~----~~~~l~~l~~~l~~l~~~~~~vr~~~~~~l~~~~~~l~~~~~~l--~~vl~ 532 (963)
T 2x19_B 459 EPYSWQHTEALLYGFQSIAETIDVN----YSDVVPGLIGLIPRISISNVQLADTVMFTIGALSEWLADHPVMI--NSVLP 532 (963)
T ss_dssp CSCCHHHHHHHHHHHHHHTTSCCSS----CCSHHHHHHHHGGGSCCCSHHHHHHHHHHHHHTHHHHHHCHHHH--TTTHH
T ss_pred CCCchHHHHHHHHHHHHHHhhcCch----hhHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhCHHHH--HHHHH
Confidence 4456778899999999998653211 02234455554432 11255688889999988875422222344 36888
Q ss_pred HHHHHhccCChHHHHHHHHHHHHhcccCcHHHHHHHHH--cCChHHHHHHhhh--CCHHHHHHHHHHHHHhhcCC
Q 017249 240 TLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILK--EGAIPGLLRLTVE--GTFEAQERARTLLDLLRDTP 310 (375)
Q Consensus 240 ~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~--~g~v~~L~~ll~~--~~~~~~~~A~~~L~~l~~~~ 310 (375)
.|+..|.+ +.++..|+.+|.++|..... .+.. ..++..|..++.. -+...+..+..++..+....
T Consensus 533 ~l~~~l~~--~~V~~~A~~al~~l~~~~~~----~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~ 601 (963)
T 2x19_B 533 LVLHALGN--PELSVSSVSTLKKICRECKY----DLPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSAL 601 (963)
T ss_dssp HHHHHTTC--GGGHHHHHHHHHHHHHHTGG----GCTTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHhCC--chHHHHHHHHHHHHHHHHHH----HHHhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcC
Confidence 89988865 78999999999999965421 2211 2345555555654 35788888888888887644
No 104
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=95.67 E-value=0.21 Score=52.12 Aligned_cols=141 Identities=7% Similarity=-0.027 Sum_probs=85.0
Q ss_pred CCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCC-----CCHHHHHHHHHHHHHhhccChhhHHHHHHcCC
Q 017249 37 GDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVS-----PNLDAIESSLLALLNLAVRNERNKVKIATAGA 111 (375)
Q Consensus 37 ~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~-----~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~ 111 (375)
.++..+..++++++.++... .+....-.=..+++.|+.++.. +...++..++++|+..+.--...... =..+
T Consensus 465 ~~W~~~EA~~~a~gaIa~~~-~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~~~~~--L~~v 541 (1023)
T 4hat_C 465 WSWHNINTLSWAIGSISGTM-SEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNF--LRTV 541 (1023)
T ss_dssp CCHHHHHHHHHHHHHTTTSS-CHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHHCHHH--HHHH
T ss_pred CCHHHHHHHHHHHHHHHcCC-CchhHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHhccHHH--HHHH
Confidence 57999999999999999876 3221211112456777887753 22344556779998877421111111 1223
Q ss_pred hHHHHHhhcCCChHHHHHHHHHHHHhhccCCChhHHHh------cCChHHHHH----HhccCCHHHHHHHHHHHHHhccC
Q 017249 112 IPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAA------SGAAPLLVQ----ILHSGSVQGRVDAVTALHYLSTC 181 (375)
Q Consensus 112 i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~------~~~l~~L~~----lL~~~~~~~~~~a~~~L~~L~~~ 181 (375)
+..|++.+...++.++..|++++.+++.... ..+.. ...++.++. .+..-+......+..++..+...
T Consensus 542 l~~L~~~l~~~~~~v~~~A~~al~~l~~~c~--~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~~~~~lyeai~~vi~~ 619 (1023)
T 4hat_C 542 ILKLFEFMHETHEGVQDMACDTFIKIVQKCK--YHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISE 619 (1023)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHHHHT--HHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhhcCCHHHHHHHHHHHHHHHHHHH--HHhhccCCCCCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence 4556666666678999999999999997533 22221 123343333 33334566667777777777655
Q ss_pred C
Q 017249 182 K 182 (375)
Q Consensus 182 ~ 182 (375)
-
T Consensus 620 ~ 620 (1023)
T 4hat_C 620 E 620 (1023)
T ss_dssp C
T ss_pred C
Confidence 3
No 105
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=95.60 E-value=0.29 Score=43.45 Aligned_cols=139 Identities=16% Similarity=0.137 Sum_probs=84.7
Q ss_pred HHHhhCC-CCHHHHHHHHHHHHHhhccChhhHHHHHHc--CChHHHHHhhcCCChHHHHHHHHHHHHhhccCC-ChhHHH
Q 017249 73 LVLMLVS-PNLDAIESSLLALLNLAVRNERNKVKIATA--GAIPPLVELLKFQNGTLRELAAAAILTLSAAAP-NKPAIA 148 (375)
Q Consensus 73 Lv~~L~~-~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~--g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~-~~~~i~ 148 (375)
+...+.+ ..+..+..+++++.|+.. ++..+..+... .+++.+...+.+.+..++..++.++.|++.... .+..-.
T Consensus 152 l~~~~~~~~~p~n~ml~lR~l~NlF~-~~~g~~~l~~~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~~~ 230 (304)
T 3ebb_A 152 LINLLNPKGKPANQLLALRTFCNCFV-GQAGQKLMMSQRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNIEG 230 (304)
T ss_dssp HHHTTCTTSCHHHHHHHHHHHHHGGG-SHHHHHHHHHTHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCHHH
T ss_pred HHHhcCCCCChHHHHHHHHHHHHccC-CchhHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCchH
Confidence 3344433 346679999999999998 67788877752 345556666666789999999999999885411 001001
Q ss_pred hcCChHHHHHHhcc-CCHHHHHHHHHHHHHhccCCCCchhhhhcCCcHHHHHHhhhcccchHHHH
Q 017249 149 ASGAAPLLVQILHS-GSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDCKKYSKFAE 212 (375)
Q Consensus 149 ~~~~l~~L~~lL~~-~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~ 212 (375)
....+..+..++.. .+.+....++.+|.+|...+.....+.+.=.+...++-+.+.+.+.++.+
T Consensus 231 ~~~ll~~l~~il~~~~d~EalyR~LvALGtL~~~~~~~~~lak~l~~~~~v~~~~~~~~~~kv~~ 295 (304)
T 3ebb_A 231 KAQCLSLISTILEVVQDLEATFRLLVALGTLISDDSNAVQLAKSLGVDSQIKKYSSVSEPAKVSE 295 (304)
T ss_dssp HHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHGGGGGGCCSSHHHHH
T ss_pred HHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhCChhHHHHHHHcCHHHHHHHHHhCCCchhHHH
Confidence 11244455555543 47888999999999998765444444433233333333333323455554
No 106
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=95.51 E-value=0.015 Score=50.03 Aligned_cols=157 Identities=13% Similarity=0.087 Sum_probs=105.6
Q ss_pred HhhCCCCHHHHHHHHHHHHHhhccChhhHHHHHHcCChHHHHHhhcCCChHHHHHHHHHHHHhhccCCChhHHHhcCChH
Q 017249 75 LMLVSPNLDAIESSLLALLNLAVRNERNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAP 154 (375)
Q Consensus 75 ~~L~~~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~l~ 154 (375)
.++.++++.++..++..| ....|..+++++++.+|..++..| . .+
T Consensus 57 ~ll~d~~~~VR~~AA~~l------------------~~~~l~~L~~D~~~~VR~~aA~~L---~--------------~~ 101 (244)
T 1lrv_A 57 QYLADPFWERRAIAVRYS------------------PVEALTPLIRDSDEVVRRAVAYRL---P--------------RE 101 (244)
T ss_dssp GGTTCSSHHHHHHHHTTS------------------CGGGGGGGTTCSSHHHHHHHHTTS---C--------------SG
T ss_pred HHhcCCCHHHHHHHHHhC------------------CHHHHHHHccCcCHHHHHHHHHHC---C--------------HH
Confidence 456788889888888743 133577888899999998888642 1 14
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHhccCCCCchhhhhcCCcHHHHHHhhhcccchHHHHHHHHHHHHhhCChhhhHHHhhc
Q 017249 155 LLVQILHSGSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNS 234 (375)
Q Consensus 155 ~L~~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~ 234 (375)
.|..++++++..++..++.. +. .+.+..++.++ +..++..+.. ++.
T Consensus 102 ~L~~ll~D~d~~VR~~aA~~---l~--------------~~~L~~L~~D~--d~~VR~~aA~---~l~------------ 147 (244)
T 1lrv_A 102 QLSALMFDEDREVRITVADR---LP--------------LEQLEQMAADR--DYLVRAYVVQ---RIP------------ 147 (244)
T ss_dssp GGGGTTTCSCHHHHHHHHHH---SC--------------TGGGGGGTTCS--SHHHHHHHHH---HSC------------
T ss_pred HHHHHHcCCCHHHHHHHHHh---CC--------------HHHHHHHHcCC--CHHHHHHHHH---hcC------------
Confidence 57788899999999988874 21 12244444443 4566665554 221
Q ss_pred cCcHHHHHHHhccCChHHHHHHHHHH-----HHhcccCcHHHHHHHHHcCChHHHHHHhhhCCHHHHHHHHHHH
Q 017249 235 DGGILTLVETVEDGSLVSTQHAVGAL-----LSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLL 303 (375)
Q Consensus 235 ~g~v~~Lv~lL~~~~~~~~~~a~~~L-----~~l~~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~~~~~A~~~L 303 (375)
.+.+..+++++++.++..++..+ ..+..+..+..+..++..-..+.|..++.+.++.+|+.++..+
T Consensus 148 ---~~~l~~l~~D~d~~VR~~aa~~l~~~ll~~ll~D~d~~VR~aaa~~l~~~~L~~Ll~D~d~~VR~~aa~~l 218 (244)
T 1lrv_A 148 ---PGRLFRFMRDEDRQVRKLVAKRLPEESLGLMTQDPEPEVRRIVASRLRGDDLLELLHDPDWTVRLAAVEHA 218 (244)
T ss_dssp ---GGGGGGTTTCSCHHHHHHHHHHSCGGGGGGSTTCSSHHHHHHHHHHCCGGGGGGGGGCSSHHHHHHHHHHS
T ss_pred ---HHHHHHHHcCCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHhCCHHHHHHHHcCCCHHHHHHHHHcC
Confidence 12344567788888988887753 2344455567777777766677788888888888988888764
No 107
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=95.36 E-value=1.1 Score=38.03 Aligned_cols=152 Identities=15% Similarity=0.102 Sum_probs=95.4
Q ss_pred HHHHHhcCC-CHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCC----C-------CHHHHHHHHHHHHHhh
Q 017249 29 ELSDKLING-DLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVS----P-------NLDAIESSLLALLNLA 96 (375)
Q Consensus 29 ~Lv~~L~s~-~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~----~-------~~~~~~~a~~~L~~L~ 96 (375)
..|..|++. .++.....+..|.-....++..+.+.| ..+|+..|+..|.. + +.+.+..+++||..+.
T Consensus 4 ~yi~~L~~~~~~~~~~~~L~~L~v~Lrt~~~~Wv~~F-~~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalm 82 (233)
T 2f31_A 4 MYIQELRSGLRDMHLLSCLESLRVSLNNNPVSWVQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFM 82 (233)
T ss_dssp HHHHHHTTTCCHHHHHHHHHHHHHHHHHSCHHHHHHH-HHHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhccchHHHHHHHHHHhHhHhcCCcHHHHHH-HHhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHh
Confidence 345555543 232223334444444455546788888 57888888888742 1 3566888999999988
Q ss_pred ccChhhHHHHHH-cCChHHHHHhhcCCChHHHHHHHHHHHHhhccCC--C-hhHHH----------hcCChHHHHHHhcc
Q 017249 97 VRNERNKVKIAT-AGAIPPLVELLKFQNGTLRELAAAAILTLSAAAP--N-KPAIA----------ASGAAPLLVQILHS 162 (375)
Q Consensus 97 ~~~~~~r~~i~~-~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~--~-~~~i~----------~~~~l~~L~~lL~~ 162 (375)
. +......+.. .+++..|...|.++++.++..++..|..++..++ + ...+. +..-...+++.++.
T Consensus 83 n-~~~G~~~vl~~~~~i~~l~~~L~s~~~~~r~~~leLL~~lc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~ 161 (233)
T 2f31_A 83 N-NKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKS 161 (233)
T ss_dssp S-SHHHHHHHHTSSSHHHHHHTTCCTTSHHHHHHHHHHHHHHHTCSSSSCHHHHHHHHHHHHHHHHTSCTTHHHHHTTST
T ss_pred C-ChHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHhCCcchHHHHHHHHhc
Confidence 7 5666666666 6789999999999999999999999999887654 4 33221 12234455665553
Q ss_pred C-CHHHHHHHHHHHHHhccCC
Q 017249 163 G-SVQGRVDAVTALHYLSTCK 182 (375)
Q Consensus 163 ~-~~~~~~~a~~~L~~L~~~~ 182 (375)
. +.+.+..++..+-.+...+
T Consensus 162 ~~~~e~~~~~m~lIN~li~~~ 182 (233)
T 2f31_A 162 GTSIALKVGCLQLINALITPA 182 (233)
T ss_dssp TSCHHHHHHHHHHHHHHHTTC
T ss_pred CChHHHHHHHHHHHHHHHCCC
Confidence 3 3444444444444444443
No 108
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=95.31 E-value=3.4 Score=43.27 Aligned_cols=101 Identities=14% Similarity=0.081 Sum_probs=59.4
Q ss_pred CChHHHHHHHHHHHHhcccCcHHHHHHHHHcCChHHHHHHhh-----hCCHHHHHHHHHHHHHhhcCCh-hhhhhhhhHH
Q 017249 248 GSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTV-----EGTFEAQERARTLLDLLRDTPQ-EKRLSSSVLE 321 (375)
Q Consensus 248 ~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~g~v~~L~~ll~-----~~~~~~~~~A~~~L~~l~~~~~-~~~~~~g~~~ 321 (375)
.+-..++.++++++.++.......... .-..+++.|..+.. +..+.++..+++++..+++.-. ....-..+++
T Consensus 465 ~~W~~~eaal~algsia~~~~~~~e~~-~l~~v~~~l~~l~~~~~~~~~~~~v~~~~~~~lgry~~~~~~~~~~l~~vl~ 543 (1049)
T 3m1i_C 465 WSWHNINTLSWAIGSISGTMSEDTEKR-FVVTVIKDLLDLTVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFLRTVIL 543 (1049)
T ss_dssp CCHHHHHHHHHHHHHTTTSSCHHHHHH-HHHHHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhcccCchhhHH-HHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 345678899999999987653221111 11223344444322 2345556567788887664321 1222334666
Q ss_pred HHHHHHhhcCCChHHHHHHHHHHHHHHHHHH
Q 017249 322 KIVYDIAARVDGADKAAETAKRLLQDMVQRS 352 (375)
Q Consensus 322 ~l~~~l~~~~~g~~~~~~~a~~~l~~l~~~s 352 (375)
.++..|. +..++.+..|..++..|.+..
T Consensus 544 ~ll~~l~---~~~~~V~~~A~~al~~l~~~~ 571 (1049)
T 3m1i_C 544 KLFEFMH---ETHEGVQDMACDTFIKIVQKC 571 (1049)
T ss_dssp HHHHHTT---SSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhc---CCCHHHHHHHHHHHHHHHHHH
Confidence 6665553 445999999999999998753
No 109
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=95.03 E-value=0.17 Score=44.84 Aligned_cols=181 Identities=11% Similarity=0.033 Sum_probs=104.3
Q ss_pred hHHHHHhhCCCCHHHHHHHHHHHHHhhccChhhHHHHHHcCChHHH----HHhhcC-CChHHHHHHHHHHHHhhccCCCh
Q 017249 70 VQPLVLMLVSPNLDAIESSLLALLNLAVRNERNKVKIATAGAIPPL----VELLKF-QNGTLRELAAAAILTLSAAAPNK 144 (375)
Q Consensus 70 v~~Lv~~L~~~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~L----v~lL~~-~~~~~~~~a~~~L~~Ls~~~~~~ 144 (375)
+..+.+++ +...+.+--++..++-+.. ++.....+.+...-..+ ...+.+ ..+..+-.++++++|+..++..+
T Consensus 105 l~~l~kil-~WP~~~~fPvLDLlRl~~l-~p~~~~~~~~~~~~~~l~~~l~~~~~~~~~p~n~ml~lR~l~NlF~~~~g~ 182 (304)
T 3ebb_A 105 LQILWKAI-NCPEDIVFPALDILRLSIK-HPSVNENFCNEKEGAQFSSHLINLLNPKGKPANQLLALRTFCNCFVGQAGQ 182 (304)
T ss_dssp HHHHHHHH-TSCTTTCHHHHHHHHHHTT-SHHHHHHHHSTTTHHHHHHHHHHTTCTTSCHHHHHHHHHHHHHGGGSHHHH
T ss_pred HHHHHHHH-cCCHHhHHHHHHHHHHHHc-CccHHHHhhccccchHHHHHHHHhcCCCCChHHHHHHHHHHHHccCCchhH
Confidence 45666666 3444556677777776665 45555555543322333 333332 35667889999999999887777
Q ss_pred hHHHh--cCChHHHHHHhccCCHHHHHHHHHHHHHhccCC---CCchhhhhcCCcHHHHHHhhhcccchHHHHHHHHHHH
Q 017249 145 PAIAA--SGAAPLLVQILHSGSVQGRVDAVTALHYLSTCK---ENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLE 219 (375)
Q Consensus 145 ~~i~~--~~~l~~L~~lL~~~~~~~~~~a~~~L~~L~~~~---~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~ 219 (375)
..+.. ..+++.+...+.+.+..++..++.++.|++... ..... ...+...+..++.... +.+..-.++-+|+
T Consensus 183 ~~l~~~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~~~--~~~ll~~l~~il~~~~-d~EalyR~LvALG 259 (304)
T 3ebb_A 183 KLMMSQRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNIEG--KAQCLSLISTILEVVQ-DLEATFRLLVALG 259 (304)
T ss_dssp HHHHHTHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCHHH--HHHHHHHHHHHHTTCC-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCchH--HHHHHHHHHHHHhccC-CHHHHHHHHHHHH
Confidence 66653 234555555556678889999999999998531 11111 1113444445555433 4445555788888
Q ss_pred HhhCChhhhHHHhhccCcHHHHHHHhcc-CChHHHHH
Q 017249 220 ILSSSEEGRIAITNSDGGILTLVETVED-GSLVSTQH 255 (375)
Q Consensus 220 ~l~~~~~~~~~~~~~~g~v~~Lv~lL~~-~~~~~~~~ 255 (375)
+|...+.....+...-|+-..+-.+.+. ..+++.+.
T Consensus 260 tL~~~~~~~~~lak~l~~~~~v~~~~~~~~~~kv~~~ 296 (304)
T 3ebb_A 260 TLISDDSNAVQLAKSLGVDSQIKKYSSVSEPAKVSEC 296 (304)
T ss_dssp HHHTTCHHHHHHHHHTTHHHHGGGGGGCCSSHHHHHH
T ss_pred HHHhCChhHHHHHHHcCHHHHHHHHHhCCCchhHHHH
Confidence 8887655555555333333333334433 23444433
No 110
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=94.75 E-value=1.9 Score=39.47 Aligned_cols=154 Identities=15% Similarity=0.080 Sum_probs=102.0
Q ss_pred HHHHHHHhcCCC-HHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhC-----------CCCHHHHHHHHHHHHH
Q 017249 27 IEELSDKLINGD-LETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLV-----------SPNLDAIESSLLALLN 94 (375)
Q Consensus 27 l~~Lv~~L~s~~-~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~-----------~~~~~~~~~a~~~L~~ 94 (375)
....|..|.++. .+.....+..|.--....+....+.|+ .+|+..|++.|. ..+...+..+++||..
T Consensus 68 P~~yi~~L~~~~~~~kl~~~L~sL~v~Lrt~~~sWV~~F~-~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLka 146 (383)
T 3eg5_B 68 AMMYIQELRSGLRDMHLLSCLESLRVSLTSHPVSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKA 146 (383)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHHHHHHHHHHSCHHHHHHHH-HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccchhHHHHHHHHHHHHhhCccHHHHHHH-HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHH
Confidence 455677776543 222234555555555555467888887 778899988884 1245778889999999
Q ss_pred hhccChhhHHHHHH-cCChHHHHHhhcCCChHHHHHHHHHHHHhhccCC--C-hhHH----------HhcCChHHHHHHh
Q 017249 95 LAVRNERNKVKIAT-AGAIPPLVELLKFQNGTLRELAAAAILTLSAAAP--N-KPAI----------AASGAAPLLVQIL 160 (375)
Q Consensus 95 L~~~~~~~r~~i~~-~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~--~-~~~i----------~~~~~l~~L~~lL 160 (375)
+.. +......+.. ...+..|...|.+.++.++..++..|..++..++ + ...+ .+..-+..++..|
T Consensus 147 lmN-~~~G~~~vl~~~~~i~~l~~~L~s~~~~~~~~aleLL~~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L 225 (383)
T 3eg5_B 147 FMN-NKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGL 225 (383)
T ss_dssp HTS-SHHHHHHHHTCSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTT
T ss_pred Hhc-chhhHHHHHcChHHHHHHHHHhCCCchHHHHHHHHHHHHHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHH
Confidence 886 5666666666 6789999999999999999999999999987754 3 3222 1223456667777
Q ss_pred ccC-CHHHHHHHHHHHHHhccCC
Q 017249 161 HSG-SVQGRVDAVTALHYLSTCK 182 (375)
Q Consensus 161 ~~~-~~~~~~~a~~~L~~L~~~~ 182 (375)
+.. +.+.+..++..+-.+...+
T Consensus 226 ~~~~~~e~~~~~m~lIN~li~~~ 248 (383)
T 3eg5_B 226 KSGTSIALKVGCLQLINALITPA 248 (383)
T ss_dssp STTSCHHHHHHHHHHHHHHHTTC
T ss_pred HccCcHHHHHHHHHHHHHHHcCC
Confidence 653 4455555554444444443
No 111
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=94.24 E-value=2.8 Score=37.29 Aligned_cols=197 Identities=16% Similarity=0.125 Sum_probs=141.1
Q ss_pred HhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCC-CCchhhhh--cCCcHHHHHHhhhcccchHHHHHHHHHHHHhhCC
Q 017249 148 AASGAAPLLVQILHSGSVQGRVDAVTALHYLSTCK-ENSSPILD--ATAVPPLINLLKDCKKYSKFAEKATALLEILSSS 224 (375)
Q Consensus 148 ~~~~~l~~L~~lL~~~~~~~~~~a~~~L~~L~~~~-~~~~~i~~--~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~~ 224 (375)
...+.+..|+..|..-+-+.+..+..+..++.... +.+...++ ..-...+..++... +.+.+...+..+|+....+
T Consensus 75 ~~~dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~peil~~L~~gY-e~~diAl~~G~mLRecir~ 153 (341)
T 1upk_A 75 YNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGY-ESPEIALNCGIMLRECIRH 153 (341)
T ss_dssp HHHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGG-GSTTTHHHHHHHHHHHHTS
T ss_pred HHhCHHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHcCHHHHHHHHHhh-ccchhHhHHHHHHHHHHHh
Confidence 34688899999999999999999999999987653 33222222 12344444444443 3445667788999999999
Q ss_pred hhhhHHHhhccCcHHHHHHHhccCChHHHHHHHHHHHHhcccCcHHHHHHHHHc---CChHHHHHHhhhCCHHHHHHHHH
Q 017249 225 EEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKE---GAIPGLLRLTVEGTFEAQERART 301 (375)
Q Consensus 225 ~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~---g~v~~L~~ll~~~~~~~~~~A~~ 301 (375)
+...+.++ ....+..+..++..++-.+...|..++..+-..+. .....++.. ......-.++.+++.-+|..+..
T Consensus 154 e~la~~iL-~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk-~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkRQSlK 231 (341)
T 1upk_A 154 EPLAKIIL-WSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHK-LLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSLK 231 (341)
T ss_dssp HHHHHHHH-HSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSH-HHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHHH
T ss_pred HHHHHHHh-ccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccH-HHHHHHHHHhHHHHHHHHHHHhcCCcchhHHHHHH
Confidence 99999898 57888999999999999999999999998877663 344445443 36677778999999999999999
Q ss_pred HHHHhhcCChh-----h-hhhhhhHHHHHHHHhhcCCChHHHHHHHHHHHHHHHH
Q 017249 302 LLDLLRDTPQE-----K-RLSSSVLEKIVYDIAARVDGADKAAETAKRLLQDMVQ 350 (375)
Q Consensus 302 ~L~~l~~~~~~-----~-~~~~g~~~~l~~~l~~~~~g~~~~~~~a~~~l~~l~~ 350 (375)
+|.-+--.... + +-...-+.-++..|. +.+.-.+-.|=-+.+.++.
T Consensus 232 LLgelLldr~N~~vM~~Yis~~~nLkl~M~LL~---d~sk~Iq~EAFhVFKvFVA 283 (341)
T 1upk_A 232 LLGELLLDRHNFTIMTKYISKPENLKLMMNLLR---DKSRNIQFEAFHVFKVFVA 283 (341)
T ss_dssp HHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTT---CSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCchHHHHHHHHhCCHHHHHHHHHHhc---Cchhchhhhhhhheeeeee
Confidence 99988655432 1 223446666665553 4556666667666666653
No 112
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=94.24 E-value=0.4 Score=49.90 Aligned_cols=304 Identities=10% Similarity=0.012 Sum_probs=158.8
Q ss_pred CCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhccC--hhhHHHHHHcCChH
Q 017249 36 NGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIESSLLALLNLAVRN--ERNKVKIATAGAIP 113 (375)
Q Consensus 36 s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~~~~~~~~~a~~~L~~L~~~~--~~~r~~i~~~g~i~ 113 (375)
+.+++....++.+|.....-- ....++..+.++.+.++|.. ++++..|+.+|..+.... ++.+..++..=.+.
T Consensus 204 ~~~~~l~~~~L~~l~s~i~wi---~~~~i~~~~ll~~l~~~L~~--~~~r~~A~ecL~ei~~k~~~~~~k~~li~~l~L~ 278 (980)
T 3ibv_A 204 AKNYGTVGLCLQVYAQWVSWI---NINLIVNEPCMNLLYSFLQI--EELRCAACETMTEIVNKKMKPLEKLNLLNILNLN 278 (980)
T ss_dssp TTCHHHHHHHHHHHHHHTTTS---CHHHHHCHHHHHHHHHHTTS--HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHhhc---CHHhhhcchHHHHHHHHcCC--hHHHHHHHHHHHHHHHcCCChhhHHHHHHHHhHH
Confidence 478888899999999988754 34556667788889998876 699999999999988643 33444444321122
Q ss_pred HHHHhhc--CCChHHHHHHHHHHHHhh------ccCCC---h---hH--HHhcCChHHHHHHhccCCHHHHHHHHHHHHH
Q 017249 114 PLVELLK--FQNGTLRELAAAAILTLS------AAAPN---K---PA--IAASGAAPLLVQILHSGSVQGRVDAVTALHY 177 (375)
Q Consensus 114 ~Lv~lL~--~~~~~~~~~a~~~L~~Ls------~~~~~---~---~~--i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~~ 177 (375)
..+..+. ..+.+..+..+..+..+. ...+. . .. -.-.+.++.++.++.+++.++...++..+..
T Consensus 279 ~~~~~l~~~~~D~d~~~~la~L~~~~ge~l~~~~~~~~~~~~~~~~~~~~~l~~ll~~lL~~~~~~~deVs~~t~~Fw~~ 358 (980)
T 3ibv_A 279 LFFSKSQEQSTDPNFDEHVAKLINAQGVELVAIKSDPSELSPELKENCSFQLYNLFPYLIRYLSDDYDETSTAVFPFLSD 358 (980)
T ss_dssp HHHCC-----CCHHHHHHHHHHHHHHHHHHHHHHTSCC--CHHHHHHHHHHHHHTHHHHHHHHTCSSHHHHHTTHHHHHH
T ss_pred HHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHccCccccchhhhhhHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHH
Confidence 2222222 346666554444443221 11110 0 01 1123678888899988887776666655544
Q ss_pred hccC----CC---CchhhhhcCCcHHHHHHhhh----cc----------cch----HHHHHHHHHHHHhhC-ChhhhHHH
Q 017249 178 LSTC----KE---NSSPILDATAVPPLINLLKD----CK----------KYS----KFAEKATALLEILSS-SEEGRIAI 231 (375)
Q Consensus 178 L~~~----~~---~~~~i~~~g~i~~Lv~ll~~----~~----------~~~----~~~~~a~~~L~~l~~-~~~~~~~~ 231 (375)
+... +. ..... ...++.|+..+-. +. ++. ..+.....++..++. +++..-..
T Consensus 359 ~l~~~~~~~~~~~~~~~~--~~~l~~Ll~~li~k~~yp~d~~~~~~~d~ed~~~F~e~Rk~l~~l~d~~~~l~~~~~l~~ 436 (980)
T 3ibv_A 359 LLVSLRKESSSKELSASL--KEFLKSLLEAIIKKMKYDESQEWDDDPDSEEEAEFQEMRKKLKIFQDTINSIDSSLFSSY 436 (980)
T ss_dssp HHHHHHHHTTSCCCCHHH--HHHHHHHHHHHHHTTSCCTTCCCCCCSSSSTHHHHHHHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred HHHHHHhccccccccHHH--HHHHHHHHHHHHHHccCCCccccccccchhHHHHHHHHHHHHHHHHHHHHhcChHHHHHH
Confidence 3321 11 11111 1233444433321 10 000 122222211112221 22211110
Q ss_pred hhccCcHHH-HHHHhcc---CChHHHHHHHHHHHHhcccCcHHHHHHHHHcC----ChHHHHHHhh-----hCCHHHHHH
Q 017249 232 TNSDGGILT-LVETVED---GSLVSTQHAVGALLSLCQSCRDKYRQLILKEG----AIPGLLRLTV-----EGTFEAQER 298 (375)
Q Consensus 232 ~~~~g~v~~-Lv~lL~~---~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~g----~v~~L~~ll~-----~~~~~~~~~ 298 (375)
+ ...+.. +-+.+.. .+=.-.+.++.+|..++.+.........-... +++.|..++. ...|.++..
T Consensus 437 ~--~~~i~~~l~~~l~~~~~~~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll~s~i~~~~hp~V~~~ 514 (980)
T 3ibv_A 437 M--YSAITSSLSTAATLSPENSWQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVTTSQVCRHPHPLVQLL 514 (980)
T ss_dssp H--HHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHHHSSTTTCCCHHHHHH
T ss_pred H--HHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHHhCCCCCCCCHHHHHH
Confidence 0 002221 2222321 12334788999999988765321110000012 3344444544 567999999
Q ss_pred HHHHHHHhhcCChhhhhhhhhHHHHHHHHhh--cC-CChHHHHHHHHHHHHHHHHH
Q 017249 299 ARTLLDLLRDTPQEKRLSSSVLEKIVYDIAA--RV-DGADKAAETAKRLLQDMVQR 351 (375)
Q Consensus 299 A~~~L~~l~~~~~~~~~~~g~~~~l~~~l~~--~~-~g~~~~~~~a~~~l~~l~~~ 351 (375)
+.+++...++.-.. ....+++++..+.. .. +..++.+..|..++++|++.
T Consensus 515 ~~~~l~rys~~~~~---~~~~l~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~ 567 (980)
T 3ibv_A 515 YMEILVRYASFFDY---ESAAIPALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKS 567 (980)
T ss_dssp HHHHHHHTGGGGGT---CCTTHHHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc---CchhHHHHHHHHhccccccCCChhHHHHHHHHHHHHHHH
Confidence 99999887765421 22356666666543 22 23478899999999999876
No 113
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=94.07 E-value=0.48 Score=40.00 Aligned_cols=135 Identities=15% Similarity=0.029 Sum_probs=91.3
Q ss_pred HHHHHH-HhcCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHH-hhCCCCHHHHHHHHHHHHHhhc-cChhhH
Q 017249 27 IEELSD-KLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVL-MLVSPNLDAIESSLLALLNLAV-RNERNK 103 (375)
Q Consensus 27 l~~Lv~-~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~-~L~~~~~~~~~~a~~~L~~L~~-~~~~~r 103 (375)
+..+.. +.+++..+++..|+..|..+ . . .. ..++.+.. +-.+++..|++.+..++..++. ..++.
T Consensus 72 ~~~la~~L~~~~~deVR~~Av~lLg~~-~-~---~~------~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe~- 139 (240)
T 3l9t_A 72 IKKLAFLAYQSDVYQVRMYAVFLFGYL-S-K---DK------EILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYKK- 139 (240)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHT-T-T---SH------HHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTTT-
T ss_pred HHHHHHHHHhCcchHHHHHHHHHHHhc-c-C---cH------HHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHHH-
Confidence 334444 44566678898999988777 2 2 11 12555555 4456789999999999999885 33331
Q ss_pred HHHHHcCChHHHHHhhcCCChHHHHHHHHHHHHhhccCCChhHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCC
Q 017249 104 VKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTCK 182 (375)
Q Consensus 104 ~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~~L~~~~ 182 (375)
.++.+.....++++.+|..|+..+.-.+..... ...-.-.++.|-.+..+++..++.+..+.|..++..+
T Consensus 140 -------~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~~~~--k~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~~ 209 (240)
T 3l9t_A 140 -------ALPIIDEWLKSSNLHTRRAATEGLRIWTNRPYF--KENPNEAIRRIADLKEDVSEYVRKSVGNALRDISKKF 209 (240)
T ss_dssp -------THHHHHHHHHCSSHHHHHHHHHHTCSGGGSTTT--TTCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTTC
T ss_pred -------HHHHHHHHhcCCCHHHHHHHHHhhHHHhccchh--hcCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhC
Confidence 567888889999999999888877543322111 0011124566666677788899999999999999764
No 114
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=93.97 E-value=0.32 Score=50.85 Aligned_cols=143 Identities=12% Similarity=0.066 Sum_probs=86.4
Q ss_pred CCHHHHHHHHHHHHHhccCCCC-chhhhhcCCcHHHHHHhhhcc---cchHHHHHHHHHHHHhhCChhhhHHHhhccCcH
Q 017249 163 GSVQGRVDAVTALHYLSTCKEN-SSPILDATAVPPLINLLKDCK---KYSKFAEKATALLEILSSSEEGRIAITNSDGGI 238 (375)
Q Consensus 163 ~~~~~~~~a~~~L~~L~~~~~~-~~~i~~~g~i~~Lv~ll~~~~---~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v 238 (375)
.+-..++.+++++..++.+... ...-.-..+++.|+.++.... +...++..++++++..+..-......+ ...+
T Consensus 465 ~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~~~~~L--~~vl 542 (1023)
T 4hat_C 465 WSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFL--RTVI 542 (1023)
T ss_dssp CCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHHCHHHH--HHHH
T ss_pred CCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHhccHHHH--HHHH
Confidence 3567899999999999876422 121112347778888776421 122344456677765554322222223 2355
Q ss_pred HHHHHHhccCChHHHHHHHHHHHHhcccCcHHHHHHHHH------cCChHHH----HHHhhhCCHHHHHHHHHHHHHhhc
Q 017249 239 LTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILK------EGAIPGL----LRLTVEGTFEAQERARTLLDLLRD 308 (375)
Q Consensus 239 ~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~------~g~v~~L----~~ll~~~~~~~~~~A~~~L~~l~~ 308 (375)
..|+..+.+.++.++..|++++.++|... +..+.. ...++.+ ......-++..+..+..++..+..
T Consensus 543 ~~L~~~l~~~~~~v~~~A~~al~~l~~~c----~~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~~~~~lyeai~~vi~ 618 (1023)
T 4hat_C 543 LKLFEFMHETHEGVQDMACDTFIKIVQKC----KYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIIS 618 (1023)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHHHHH----THHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhhcCCHHHHHHHHHHHHHHHHHH----HHHhhccCCCCCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 56666676677889999999999999754 333432 1133333 334444567777777788888877
Q ss_pred CCh
Q 017249 309 TPQ 311 (375)
Q Consensus 309 ~~~ 311 (375)
..+
T Consensus 619 ~~~ 621 (1023)
T 4hat_C 619 EER 621 (1023)
T ss_dssp TCC
T ss_pred hCC
Confidence 664
No 115
>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}
Probab=93.65 E-value=1.1 Score=39.36 Aligned_cols=146 Identities=10% Similarity=0.070 Sum_probs=100.2
Q ss_pred HHHHHHHhcCC------CHHHHHHHHHHHHHHHhhCChhhHHHHHhc--CChHHHHHhhCCCCHHHHHHHHHHHHHhhcc
Q 017249 27 IEELSDKLING------DLETKIEAARDIRKVVKKSSLKTRSEFAAA--GVVQPLVLMLVSPNLDAIESSLLALLNLAVR 98 (375)
Q Consensus 27 l~~Lv~~L~s~------~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~--g~v~~Lv~~L~~~~~~~~~~a~~~L~~L~~~ 98 (375)
+.....+++++ +.+.-..|+..|..++.+- ..-..+.+. ..+..|+ +....++.+++.|.++|+.....
T Consensus 24 F~~~r~ll~sg~~~~~~D~~~le~aLD~L~ElSHDi--~~G~KI~~~ef~lL~nL~-~~~~~~~~~rE~aarII~ssLRN 100 (315)
T 3qml_C 24 FKEMRNIIDSNPTLSSQDIARLEDSFDRIMEFAHDY--KHGYKIITHEFALLANLS-LNENLPLTLRELSTRVITSCLRN 100 (315)
T ss_dssp HHHHHHHHHHCSSCCHHHHHHHHHHHHHHGGGTTSH--HHHHHHHHHHHHHHHHHH-HCTTSCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCCCCcccHHHHHHHHHHHHHhhhhH--HhhhHHHhCcHHHHHHHH-hhccCChhHHHHHHHHHHHHHcc
Confidence 44455556655 4556678999999999887 565556553 4455555 44556788999999999999999
Q ss_pred ChhhHHHHHH--cCChHHHHHhhcC-------CChHHHHHHHHHHHHhhccCCChhHHHhcCChHHHHHHhccC--CHHH
Q 017249 99 NERNKVKIAT--AGAIPPLVELLKF-------QNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHSG--SVQG 167 (375)
Q Consensus 99 ~~~~r~~i~~--~g~i~~Lv~lL~~-------~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~l~~L~~lL~~~--~~~~ 167 (375)
+|+.-..+.+ ...+..++.-|.. ....++..-+.+|..|..++.. + ...++..|.+++..+ +..+
T Consensus 101 NP~Al~~V~~~~p~fv~~lf~~L~~~~~~~~~~~~~l~KR~LsII~~L~~~~~~---F-~~~~m~~L~~ly~~~~~d~~~ 176 (315)
T 3qml_C 101 NPPVVEFINESFPNFKSKIMAALSNLNDSNHRSSNILIKRYLSILNELPVTSED---L-PIYSTVVLQNVYERNNKDKQL 176 (315)
T ss_dssp CHHHHHHHHHHCTTHHHHHHHHHHHHHCC--CCCHHHHHHHHHHHHHSCCCSTT---C---CCHHHHHHHHHHTTTCHHH
T ss_pred CHHHHHHHHHhChhHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHhcChHh---h-hhccHHHHHHHHccCCCCHHH
Confidence 9998887776 3445555444422 2445677778888888877521 1 245678888888777 7888
Q ss_pred HHHHHHHHHHhc
Q 017249 168 RVDAVTALHYLS 179 (375)
Q Consensus 168 ~~~a~~~L~~L~ 179 (375)
+..++..+..+-
T Consensus 177 k~Kvl~li~d~f 188 (315)
T 3qml_C 177 QIKVLELISKIL 188 (315)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHc
Confidence 888887776553
No 116
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=93.57 E-value=4.3 Score=37.15 Aligned_cols=174 Identities=14% Similarity=0.110 Sum_probs=108.7
Q ss_pred HHHHHHhcCCC-HHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCC-----------CCHHHHHHHHHHHHHh
Q 017249 28 EELSDKLINGD-LETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVS-----------PNLDAIESSLLALLNL 95 (375)
Q Consensus 28 ~~Lv~~L~s~~-~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~-----------~~~~~~~~a~~~L~~L 95 (375)
...|..|.+.. .+.....+..|.-....++..+...|. .+|+..|+..|.. .+...+..+++||..+
T Consensus 7 ~~yv~~L~~~~~~~~~~~~L~~L~v~Lrt~~~~Wv~~F~-~~Gl~~Ll~~L~~~~~~~~~~~~~~d~~~~~~~l~CLkal 85 (386)
T 2bnx_A 7 MMYIQELRSGLRDMHLLSCLESLRVSLNNNPVSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAF 85 (386)
T ss_dssp HHHHHHHTSCCCHHHHHHHHHHHHHHHHHSCHHHHHHHH-HHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccchHHHHHHHHHHhHHHhcCCcHHHHHHH-HhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHH
Confidence 34556665432 222123344444444555467888885 6778888887731 1456788899999998
Q ss_pred hccChhhHHHHHH-cCChHHHHHhhcCCChHHHHHHHHHHHHhhccCC--C-hhHH----------HhcCChHHHHHHhc
Q 017249 96 AVRNERNKVKIAT-AGAIPPLVELLKFQNGTLRELAAAAILTLSAAAP--N-KPAI----------AASGAAPLLVQILH 161 (375)
Q Consensus 96 ~~~~~~~r~~i~~-~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~--~-~~~i----------~~~~~l~~L~~lL~ 161 (375)
.. +......+.. .+++..|...|.+.++.++..++..|..+|..++ + ...+ .+..-...+++.+.
T Consensus 86 mN-~~~Gl~~vl~~~~~i~~l~~sL~s~~~~~r~~vleLL~alc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~ 164 (386)
T 2bnx_A 86 MN-NKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLK 164 (386)
T ss_dssp TS-SHHHHHHHHHSSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTS
T ss_pred hC-CHHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHhCchhhHHHHHHHHH
Confidence 87 5556666665 6789999999999999999999999998887754 4 3222 12334566777776
Q ss_pred cC-CHHHHHHHHHHHHHhccCCCCch-------hhhhcCCcHHHHHHhhhc
Q 017249 162 SG-SVQGRVDAVTALHYLSTCKENSS-------PILDATAVPPLINLLKDC 204 (375)
Q Consensus 162 ~~-~~~~~~~a~~~L~~L~~~~~~~~-------~i~~~g~i~~Lv~ll~~~ 204 (375)
.. +.+.+..++..+-.+...+++.. .+.. -|+..++.-++..
T Consensus 165 ~~~~~e~~~a~m~lIN~lv~~~~dl~~R~~LR~Ef~~-~GL~~il~~Lr~~ 214 (386)
T 2bnx_A 165 SGTSIALKVGCLQLINALITPAEELDFRVHIRSELMR-LGLHQVLQELREI 214 (386)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHH-TTHHHHHHHHTTC
T ss_pred cCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH-CChHHHHHHHhcc
Confidence 43 45556665555555655554322 2223 3455555555543
No 117
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=93.20 E-value=9.1 Score=39.75 Aligned_cols=250 Identities=9% Similarity=-0.086 Sum_probs=139.3
Q ss_pred CCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCCC---CHHHHHHHHHHHHHhhccChhh----HHHHHHc
Q 017249 37 GDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSP---NLDAIESSLLALLNLAVRNERN----KVKIATA 109 (375)
Q Consensus 37 ~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~~---~~~~~~~a~~~L~~L~~~~~~~----r~~i~~~ 109 (375)
.+++.|.+|-..|.++-..+ ++......+|..+ +..++.-|+.+|.+....-+.. ....+..
T Consensus 20 sd~~~r~~A~~~L~~~q~sp-----------~aw~~~~~iL~~~~~~~~~vr~fa~~~L~~~I~~l~~e~~~~~~~~lr~ 88 (980)
T 3ibv_A 20 VGPIIKQQATDFIGSLRSSS-----------TGWKICHEIFSEKTKYKPSTRLICLQTLSEKVREWNNESNLLELQMIRD 88 (980)
T ss_dssp SCHHHHHHHHHHHHHHHHST-----------THHHHHHHHTTCTTTSCHHHHHHHHHHHHHHHHHCCTTTSHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHcCh-----------hHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHHHHH
Confidence 47899999998888775554 3456667777553 6889999998888765421122 2222233
Q ss_pred CChHHHHHhhc-CCChHHHHHHHHHHHHhhccCCChhHHHhcCChHHHHHHhccCCH-HHHHHHHHHHHHhccC--C-CC
Q 017249 110 GAIPPLVELLK-FQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHSGSV-QGRVDAVTALHYLSTC--K-EN 184 (375)
Q Consensus 110 g~i~~Lv~lL~-~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~l~~L~~lL~~~~~-~~~~~a~~~L~~L~~~--~-~~ 184 (375)
..++.+...-. ...+.++...+.++..+....-. -.+.+.++-|+.++..++. ......+.+|..|... + ..
T Consensus 89 ~ll~~l~~~~~~~~~~~IrnKL~~~la~l~~~~~p---~~Wp~~i~~l~~~~~~~~~~~~~~~~LriL~~i~EEv~~~~~ 165 (980)
T 3ibv_A 89 SVWSYIKELSFLDEPAYISNAVQHLLTLLFLQLYP---SNWNDFFASLQGVIAASSQSEFSNFYLKVLLSIGDEIADSLV 165 (980)
T ss_dssp HHHHHHHHCCSTTSCTHHHHHHHHHHHHHHHHHTT---TTCTTHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCS
T ss_pred HHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHhCc---ccCchHHHHHHHHhcCCChhHHHHHHHHHHHHhHHHHHhccc
Confidence 33334433111 23567888888888888764210 1356778888888876554 3444555565544321 1 10
Q ss_pred -------------chhhhhc---CCcHHHHHHhhhc--ccchHHHHHHHHHHHHhhCChhhhHHHhhccCcHHHHHHHhc
Q 017249 185 -------------SSPILDA---TAVPPLINLLKDC--KKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVE 246 (375)
Q Consensus 185 -------------~~~i~~~---g~i~~Lv~ll~~~--~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~Lv~lL~ 246 (375)
+..+.+. .+++....++... ..++.+...++.++......-+ ...++ +...++.+..+|.
T Consensus 166 ~~~~~~~~r~~~lkd~m~~~~~~~i~~~~~~iL~~~~~~~~~~l~~~~L~~l~s~i~wi~-~~~i~-~~~ll~~l~~~L~ 243 (980)
T 3ibv_A 166 LKTDVQIQKDNLVKDAIRANDMSDIVSFVYEMMLAYSNAKNYGTVGLCLQVYAQWVSWIN-INLIV-NEPCMNLLYSFLQ 243 (980)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSC-HHHHH-CHHHHHHHHHHTT
T ss_pred ccCHHHHhhhHHHHHHHHhccHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhcC-HHhhh-cchHHHHHHHHcC
Confidence 1111111 1144444455431 1244566777777776665322 23344 4678888888886
Q ss_pred cCChHHHHHHHHHHHHhcccCc-HHHHHHHHHc-CChHHHHHHhh-hCCHHHHHHHHHHHH
Q 017249 247 DGSLVSTQHAVGALLSLCQSCR-DKYRQLILKE-GAIPGLLRLTV-EGTFEAQERARTLLD 304 (375)
Q Consensus 247 ~~~~~~~~~a~~~L~~l~~~~~-~~~~~~l~~~-g~v~~L~~ll~-~~~~~~~~~A~~~L~ 304 (375)
+ +.++..|+.+|..+..... ++.+..++.. +..+.+-.+.. ..|.+..+.-++++.
T Consensus 244 ~--~~~r~~A~ecL~ei~~k~~~~~~k~~li~~l~L~~~~~~l~~~~~D~d~~~~la~L~~ 302 (980)
T 3ibv_A 244 I--EELRCAACETMTEIVNKKMKPLEKLNLLNILNLNLFFSKSQEQSTDPNFDEHVAKLIN 302 (980)
T ss_dssp S--HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHCC-----CCHHHHHHHHHHHH
T ss_pred C--hHHHHHHHHHHHHHHHcCCChhhHHHHHHHHhHHHHHHHHhcccccHHHHHHHHHHHH
Confidence 4 7899999999998877543 3333333332 21122222222 456666655554443
No 118
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=93.08 E-value=1.7 Score=45.53 Aligned_cols=141 Identities=11% Similarity=0.059 Sum_probs=78.3
Q ss_pred CCHHHHHHHHHHHHHhccCCCCc-hhhhhcCCcHHHHHHhhhc---ccchHHHHHHHHHHHHhhCChhhhHHHhhccCcH
Q 017249 163 GSVQGRVDAVTALHYLSTCKENS-SPILDATAVPPLINLLKDC---KKYSKFAEKATALLEILSSSEEGRIAITNSDGGI 238 (375)
Q Consensus 163 ~~~~~~~~a~~~L~~L~~~~~~~-~~i~~~g~i~~Lv~ll~~~---~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v 238 (375)
.+...++.+++++..++..-... ..-.-..+++.++.+.... .+.+.++..++++++.++..-......+ ...+
T Consensus 465 ~~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~l~~~~~~~~~~~~v~~~~~~~lgry~~~~~~~~~~l--~~vl 542 (1049)
T 3m1i_C 465 WSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLTVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFL--RTVI 542 (1049)
T ss_dssp CCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHH--HHHH
T ss_pred CCHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHhHHHHH--HHHH
Confidence 45678899999999887542111 1110112333444432211 1123333346677776664322222333 2467
Q ss_pred HHHHHHhccCChHHHHHHHHHHHHhcccCcHHHHHHHH----------HcCChHHHHHHhhhCCHHHHHHHHHHHHHhhc
Q 017249 239 LTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLIL----------KEGAIPGLLRLTVEGTFEAQERARTLLDLLRD 308 (375)
Q Consensus 239 ~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~----------~~g~v~~L~~ll~~~~~~~~~~A~~~L~~l~~ 308 (375)
+.++..+.+.++.++..|+.++.++|... +..+. -..++..|..++..-+.........++..+..
T Consensus 543 ~~ll~~l~~~~~~V~~~A~~al~~l~~~~----~~~l~~~~~~~~~p~~~~il~~l~~~~~~~~~~~~~~~~eai~~ii~ 618 (1049)
T 3m1i_C 543 LKLFEFMHETHEGVQDMACDTFIKIVQKC----KYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIIS 618 (1049)
T ss_dssp HHHHHHTTSSCHHHHHHHHHHHHHHHHHH----THHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHHH----HHHhhcccCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 77888888888999999999999999754 22332 02233444445555455555555566666644
Q ss_pred C
Q 017249 309 T 309 (375)
Q Consensus 309 ~ 309 (375)
.
T Consensus 619 ~ 619 (1049)
T 3m1i_C 619 E 619 (1049)
T ss_dssp T
T ss_pred c
Confidence 3
No 119
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=93.06 E-value=1.3 Score=37.50 Aligned_cols=119 Identities=13% Similarity=0.155 Sum_probs=81.9
Q ss_pred HHHHHHHHHHHHhhCChhhhHHHhhccCcHHHHHHHhccCChHHHHHHHHHHHHhcccCcHHH-HHHH----------HH
Q 017249 209 KFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKY-RQLI----------LK 277 (375)
Q Consensus 209 ~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~-~~~l----------~~ 277 (375)
.....++.+|..+..+..+...++.+.+.+..|...|.++++.++..++..|..+|....+++ ...+ -+
T Consensus 69 ~~~~~~l~CLkalmn~~~G~~~vl~~~~~i~~l~~~L~s~~~~~r~~~leLL~~lc~~~~~~G~~~~VL~Al~~~~~~~e 148 (233)
T 2f31_A 69 RNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDE 148 (233)
T ss_dssp HHHHHHHHHHHHHTSSHHHHHHHHTSSSHHHHHHTTCCTTSHHHHHHHHHHHHHHHTCSSSSCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCChHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHhCC
Confidence 456778999999999999999999888899999999999999999999999988887643111 1111 12
Q ss_pred cCChHHHHHHhh-hCCHHHHHHHHHHHHHhhcCChh---------hhhhhhhHHHHHHHHh
Q 017249 278 EGAIPGLLRLTV-EGTFEAQERARTLLDLLRDTPQE---------KRLSSSVLEKIVYDIA 328 (375)
Q Consensus 278 ~g~v~~L~~ll~-~~~~~~~~~A~~~L~~l~~~~~~---------~~~~~g~~~~l~~~l~ 328 (375)
..-...++..+. +.+.+.+-.+...+..+...++. +....|..+ ++..|.
T Consensus 149 ~~RF~~lv~~l~~~~~~e~~~~~m~lIN~li~~~~dl~~R~~lR~ef~~~Gl~~-il~~l~ 208 (233)
T 2f31_A 149 VERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLHQ-VLQELR 208 (233)
T ss_dssp SCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHTTHHH-HHHHHH
T ss_pred cchHHHHHHHHhcCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCChHH-HHHHHh
Confidence 235566777665 34556666666666666666532 344455444 445555
No 120
>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*
Probab=92.52 E-value=2.1 Score=38.30 Aligned_cols=156 Identities=10% Similarity=0.062 Sum_probs=107.8
Q ss_pred HHHhhccCC-ChhHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCCCCchhhhhcCCcHHHHHHhhhcccchHHHH
Q 017249 134 ILTLSAAAP-NKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDCKKYSKFAE 212 (375)
Q Consensus 134 L~~Ls~~~~-~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~ 212 (375)
|.+|..++. .-.-++...++..+...++-++.++.+..+..|...+....-+..=. ...+|.++..+.... ++++.-
T Consensus 266 LL~LLmHdSnAIDGFVk~DGv~~I~TvinYpN~~l~RaG~KLLLQVSDaksL~~t~L-~e~LPFi~~~i~~h~-eDdvvY 343 (619)
T 3c2g_A 266 LLGLLLHDSDAIDGFVRSDGVGAITTVVQYPNNDLIRAGCKLLLQVSDAKALAKTPL-ENILPFLLRLIEIHP-DDEVIY 343 (619)
T ss_dssp HHHHHCCSHHHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHTTCGGGGTSCC-TTHHHHHHHHHHHCC-CHHHHH
T ss_pred HHHHHhcccccccceeecccceeEEEEeecCCcHHHHhhhheeeeecchHHHhhccc-cccchHHHHHhccCC-CcceEE
Confidence 455555554 45667888999999999999999999999999988876543322211 357888888887654 446777
Q ss_pred HHHHHHHHhhCChhhhHHHhhccCcHHHHHHHhcc-------CChHHHHHHHHHHHHhccc------------------C
Q 017249 213 KATALLEILSSSEEGRIAITNSDGGILTLVETVED-------GSLVSTQHAVGALLSLCQS------------------C 267 (375)
Q Consensus 213 ~a~~~L~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~-------~~~~~~~~a~~~L~~l~~~------------------~ 267 (375)
...+.|+|...+....+.+....|++..|-..+.. .+..-+..||++++|.... .
T Consensus 344 SGTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I~ky~~Lsdf~ea~Kkk~aC~IicN~LRalNNFLMmWIPm~NGqr~~~ 423 (619)
T 3c2g_A 344 SGTGFLSNVVAHKQHVKDIAIRSNAIFLLHTIISKYPRLDELTDAPKRNRVCEIICNCLRTLNNFLMMWIPTPNGETKTA 423 (619)
T ss_dssp HHHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHHHTSCCGGGCCSHHHHHHHHHHHHHHHHHHHHHHGGGSCCTTSCCCCC
T ss_pred ecchHHHHHHhcccchHHHHhccCcHHHHHHHHhhCCChhhhhhhhhhcchHHHHHHHHHHHhhheeEEEecCCCccccC
Confidence 88999999999887777776678999988877642 2344566788877764320 0
Q ss_pred cH---HHHHHHHHcCChHHHHHHhhhC
Q 017249 268 RD---KYRQLILKEGAIPGLLRLTVEG 291 (375)
Q Consensus 268 ~~---~~~~~l~~~g~v~~L~~ll~~~ 291 (375)
++ +..-.+++..++..|++.+...
T Consensus 424 G~~EqQQVckFIE~d~LKrLMtCLS~e 450 (619)
T 3c2g_A 424 GPNEKQQVCKFIEIDILKKLMSCLSCE 450 (619)
T ss_dssp CHHHHHHHHGGGSHHHHHHHHHHHHCC
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 01 1222345567888888877643
No 121
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=92.19 E-value=6.8 Score=35.79 Aligned_cols=122 Identities=16% Similarity=0.095 Sum_probs=85.7
Q ss_pred HHHhhHhHHHHHHHHhc-----------CCCHHHHHHHHHHHHHHHhhCChhhHHHHHhc-CChHHHHHhhCCCCHHHHH
Q 017249 19 WNQRKQALIEELSDKLI-----------NGDLETKIEAARDIRKVVKKSSLKTRSEFAAA-GVVQPLVLMLVSPNLDAIE 86 (375)
Q Consensus 19 ~~~~~~~~l~~Lv~~L~-----------s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~-g~v~~Lv~~L~~~~~~~~~ 86 (375)
..|. .+++..|+..|. ..+...+..++++|..+.... ...+.+... ..+..|+..|.+..+.++.
T Consensus 104 ~~F~-~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkalmN~~--~G~~~vl~~~~~i~~l~~~L~s~~~~~~~ 180 (383)
T 3eg5_B 104 QTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNK--FGIKTMLETEEGILLLVRAMDPAVPNMMI 180 (383)
T ss_dssp HHHH-HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHHTSSH--HHHHHHHTCSSHHHHHHHTCCTTSHHHHH
T ss_pred HHHH-HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHhcch--hhHHHHHcChHHHHHHHHHhCCCchHHHH
Confidence 3444 567777777774 124567788999999988665 555656554 7899999999999999999
Q ss_pred HHHHHHHHhhccCh-hh-HHHH----------HHcCChHHHHHhhcCC-ChHHHHHHHHHHHHhhccCCC
Q 017249 87 SSLLALLNLAVRNE-RN-KVKI----------ATAGAIPPLVELLKFQ-NGTLRELAAAAILTLSAAAPN 143 (375)
Q Consensus 87 ~a~~~L~~L~~~~~-~~-r~~i----------~~~g~i~~Lv~lL~~~-~~~~~~~a~~~L~~Ls~~~~~ 143 (375)
.++..|..+|.-+. .+ ...+ .+..-+..++..|++. +.+.+..+...+-.+....+.
T Consensus 181 ~aleLL~~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L~~~~~~e~~~~~m~lIN~li~~~~d 250 (383)
T 3eg5_B 181 DAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEE 250 (383)
T ss_dssp HHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHccCcHHHHHHHHHHHHHHHcCCCC
Confidence 99999998886442 22 2222 2345578889988874 677777666666666665543
No 122
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=92.16 E-value=8 Score=41.17 Aligned_cols=222 Identities=11% Similarity=0.006 Sum_probs=122.6
Q ss_pred HHHHHHHhcCC--CHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhh--CCCCHHHHHHHHHHHHHhhcc----
Q 017249 27 IEELSDKLING--DLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLML--VSPNLDAIESSLLALLNLAVR---- 98 (375)
Q Consensus 27 l~~Lv~~L~s~--~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L--~~~~~~~~~~a~~~L~~L~~~---- 98 (375)
+..++..+.++ +.+.+..|-..|.++-..+ .+...+...| .+.+..++..|+..|.+....
T Consensus 13 l~~~l~~~~~p~~~~~~r~~Ae~~L~~~~~~p-----------~~~~~~~~~L~~~s~~~~vR~~A~~~Lk~~I~~~W~~ 81 (1204)
T 3a6p_A 13 LVKAVTVMMDPNSTQRYRLEALKFCEEFKEKC-----------PICVPCGLRLAEKTQVAIVRHFGLQILEHVVKFRWNG 81 (1204)
T ss_dssp HHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHC-----------TTHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHSGGG
T ss_pred HHHHHHHHhCCCCChHHHHHHHHHHHHHHhCc-----------hHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhccc
Confidence 44445444443 7778888888887775444 2334444433 355789999999999987643
Q ss_pred -ChhhHHHHHHcCChHHHHHhhcC---CChHHHHHHHHHHHHhhccCCChhHHHhcCChHHHHHHhccCCHHHHHHHHHH
Q 017249 99 -NERNKVKIATAGAIPPLVELLKF---QNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHSGSVQGRVDAVTA 174 (375)
Q Consensus 99 -~~~~r~~i~~~g~i~~Lv~lL~~---~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~ 174 (375)
+++.|..+.+ ..++.+...... .++.++...+.++..++..+-.. .....++.|+.++.+ +......++.+
T Consensus 82 l~~e~k~~Ir~-~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p~---~Wp~ll~~L~~~~~~-~~~~~e~~L~i 156 (1204)
T 3a6p_A 82 MSRLEKVYLKN-SVMELIANGTLNILEEENHIKDALSRIVVEMIKREWPQ---HWPDMLIELDTLSKQ-GETQTELVMFI 156 (1204)
T ss_dssp SCHHHHHHHHH-HHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHSTT---TCTTHHHHHHHHHHT-CHHHHHHHHHH
T ss_pred CCHHHHHHHHH-HHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCcc---cchHHHHHHHHHhcC-CHHHHHHHHHH
Confidence 2334444332 233333332111 35778888888898887653110 246788888888876 45557778888
Q ss_pred HHHhccC---CCCc----h-----hhhhc--CCcHHHHHHhhhc-----------------ccchHHHHHHHHHHHHhhC
Q 017249 175 LHYLSTC---KENS----S-----PILDA--TAVPPLINLLKDC-----------------KKYSKFAEKATALLEILSS 223 (375)
Q Consensus 175 L~~L~~~---~~~~----~-----~i~~~--g~i~~Lv~ll~~~-----------------~~~~~~~~~a~~~L~~l~~ 223 (375)
|..|+.. .+.. . .+.+. .+++.+..++... .....+...++.++.+...
T Consensus 157 L~~L~Eev~~~~~~~~~r~~~l~~~l~~~~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l~~~l~ 236 (1204)
T 3a6p_A 157 LLRLAEDVVTFQTLPPQRRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAGYID 236 (1204)
T ss_dssp HHHHHHHHHTSCCSCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchhhhhhhHHHHHHHHHHHHHHHh
Confidence 8887642 1111 0 11111 1223333334321 0112344445555554333
Q ss_pred ChhhhHHHhhcc-CcHHHHHHHhccCChHHHHHHHHHHHHhcccC
Q 017249 224 SEEGRIAITNSD-GGILTLVETVEDGSLVSTQHAVGALLSLCQSC 267 (375)
Q Consensus 224 ~~~~~~~~~~~~-g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~ 267 (375)
.-.. ..+.... ..++.+..++. ++.++..|+.+|..++...
T Consensus 237 Wi~~-~~i~~~~~~ll~~l~~~l~--~~~lr~~A~ecL~~i~s~~ 278 (1204)
T 3a6p_A 237 WVSM-SHITAENCKLLEILCLLLN--EQELQLGAAECLLIAVSRK 278 (1204)
T ss_dssp TSCH-HHHHTTTSHHHHHHHHGGG--CTTTHHHHHHHHHHHHTCC
T ss_pred ccCH-HHHHhccchHHHHHHHHcC--CHHHHHHHHHHHHHHHhCC
Confidence 2111 1222111 25666666665 4668899999999998754
No 123
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=91.45 E-value=3.1 Score=43.60 Aligned_cols=171 Identities=13% Similarity=0.072 Sum_probs=103.7
Q ss_pred hHHHHHhhCCC----CHHHHHHHHHHHHHhhccChhhHH-HHHHcCChHHHHHh----hcCCChHHHHHHHHHHHHhhcc
Q 017249 70 VQPLVLMLVSP----NLDAIESSLLALLNLAVRNERNKV-KIATAGAIPPLVEL----LKFQNGTLRELAAAAILTLSAA 140 (375)
Q Consensus 70 v~~Lv~~L~~~----~~~~~~~a~~~L~~L~~~~~~~r~-~i~~~g~i~~Lv~l----L~~~~~~~~~~a~~~L~~Ls~~ 140 (375)
+..+..++.++ ++.++..++.+++.|.... +.. ..+....++.+... +...+.+-+..++.+|.|+-.
T Consensus 393 l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~--c~~~~~c~~~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN~g~- 469 (1056)
T 1lsh_A 393 LSYARELLNTSFIRNRPILRKTAVLGYGSLVFRY--CANTVSCPDELLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQ- 469 (1056)
T ss_dssp HHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHH--HTTCSSCCGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHH--hccCCCCCHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhccCC-
Confidence 44455566542 4566777777777766420 100 00111224444444 456677777889999999844
Q ss_pred CCChhHHHhcCChHHHHHHhcc-------CCHHHHHHHHHHHHHhccCCCCchhhhhcCCcHHHHHHhhhcccchHHHHH
Q 017249 141 APNKPAIAASGAAPLLVQILHS-------GSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDCKKYSKFAEK 213 (375)
Q Consensus 141 ~~~~~~i~~~~~l~~L~~lL~~-------~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~ 213 (375)
...++.|.+++.. ....++..|+++|..++...+ . .+-+.++.++.+...+..++..
T Consensus 470 ---------p~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p---~----~v~~il~~i~~n~~e~~EvRia 533 (1056)
T 1lsh_A 470 ---------PNSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDP---R----KVQEIVLPIFLNVAIKSELRIR 533 (1056)
T ss_dssp ---------GGGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCH---H----HHHHHHHHHHHCTTSCHHHHHH
T ss_pred ---------hhHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhch---H----HHHHHHHHHhcCCCCChHHHHH
Confidence 4567888887742 135678889999988874311 1 1334577777766667778776
Q ss_pred HHHHHHHhhCChhhhHHHhhccCcHHHHHHHhcc-CChHHHHHHHHHHHHhcccCcH
Q 017249 214 ATALLEILSSSEEGRIAITNSDGGILTLVETVED-GSLVSTQHAVGALLSLCQSCRD 269 (375)
Q Consensus 214 a~~~L~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~-~~~~~~~~a~~~L~~l~~~~~~ 269 (375)
|..+|-. .+| ....+..+...+.. .+..+.......|.+++....+
T Consensus 534 A~~~Lm~--t~P--------~~~~l~~ia~~l~~E~~~QV~sfv~S~l~sla~s~~P 580 (1056)
T 1lsh_A 534 SCIVFFE--SKP--------SVALVSMVAVRLRREPNLQVASFVYSQMRSLSRSSNP 580 (1056)
T ss_dssp HHHHHHH--TCC--------CHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCCSG
T ss_pred HHHHHHH--HCc--------CHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHhcCCc
Confidence 6655532 222 12344555666654 6678888888888888887765
No 124
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=91.34 E-value=4.9 Score=42.08 Aligned_cols=219 Identities=11% Similarity=0.042 Sum_probs=134.2
Q ss_pred HhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhC-CCCHHHHHHHHHHHHHhhcc----
Q 017249 24 QALIEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLV-SPNLDAIESSLLALLNLAVR---- 98 (375)
Q Consensus 24 ~~~l~~Lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~-~~~~~~~~~a~~~L~~L~~~---- 98 (375)
-..+..++..+.+++.+.+..|-..|..+-..+ ++...+..+|. +.++.++.-|+..|.+....
T Consensus 27 v~~Le~lv~~ly~p~~~~r~qA~~~L~q~q~sp-----------~aw~~~~~iL~~s~~~~vR~fAa~~L~~~I~~~W~~ 95 (1073)
T 3gjx_A 27 INLLDNVVNCLYHGEGAQQRMAQEVLTHLKEHP-----------DAWTRVDTILEFSQNMNTKYYGLQILENVIKTRWKI 95 (1073)
T ss_dssp HHHHHHHHHTTTCSSHHHHHHHHHHHHTSSCCS-----------CHHHHHTCC---CCSHHHHHHHHHHHHHHHHHTGGG
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHcCc-----------hHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhhhh
Confidence 456778888888888888888888887765444 23444444553 45789999999999987753
Q ss_pred -ChhhHHHHHHcCChHHHHHhhcC-----CChHHHHHHHHHHHHhhccC-CChhHHHhcCChHHHHHHhccCCHHHHHHH
Q 017249 99 -NERNKVKIATAGAIPPLVELLKF-----QNGTLRELAAAAILTLSAAA-PNKPAIAASGAAPLLVQILHSGSVQGRVDA 171 (375)
Q Consensus 99 -~~~~r~~i~~~g~i~~Lv~lL~~-----~~~~~~~~a~~~L~~Ls~~~-~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a 171 (375)
+++.+..+ +...+..+.+...+ .++.++...+.++..++..+ +. .....++-++..+.. ++......
T Consensus 96 L~~e~~~~L-R~~Ll~~l~~~~~~~~~~e~~~~vinKLa~~La~I~k~~~P~----~Wp~fi~dLv~~~~~-~~~~~~~~ 169 (1073)
T 3gjx_A 96 LPRNQCEGI-KKYVVGLIIKTSSDPTCVEKEKVYIGKLNMILVQILKQEWPK----HWPTFISDIVGASRT-SESLCQNN 169 (1073)
T ss_dssp SCHHHHHHH-HHHHHHHHHHHHTCGGGGTSCHHHHHHHHHHHHHHHHHHTTT----TCTTHHHHHHHHHHH-CHHHHHHH
T ss_pred CCHHHHHHH-HHHHHHHHHHHccCccccccchHHHHHHHHHHHHHHHHhChh----hccHHHHHHHHHhCC-CHHHHHHH
Confidence 22233333 33334444444322 24566777778888877542 11 245677778877754 34455667
Q ss_pred HHHHHHhccC-CCC-------------chhhhhcCCcHHHHHHh----hhcccchHHHHHHHHHHHHhhCChhhhHHHhh
Q 017249 172 VTALHYLSTC-KEN-------------SSPILDATAVPPLINLL----KDCKKYSKFAEKATALLEILSSSEEGRIAITN 233 (375)
Q Consensus 172 ~~~L~~L~~~-~~~-------------~~~i~~~g~i~~Lv~ll----~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~ 233 (375)
+.+|..|+.. .+. +..+.. -++.++.++ ... ..+.+...++.+|..+..--+ ...++
T Consensus 170 L~IL~~L~EEV~d~~~~~l~~~r~~~lk~~L~~--~~~~Il~ll~~iL~~~-~~~~lv~~~L~~L~~~~sWI~-i~~i~- 244 (1073)
T 3gjx_A 170 MVILKLLSEEVFDFSSGQITQVKAKHLKDSMCN--EFSQIFQLCQFVMENS-QNAPLVHATLETLLRFLNWIP-LGYIF- 244 (1073)
T ss_dssp HHHHHHHHHHHTTSHHHHBCHHHHHHHHHHHHH--TCHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHTTTSC-THHHH-
T ss_pred HHHHHHHHHHHHhcccccccHHHHHHHHHHHHH--HHHHHHHHHHHHhccc-CCHHHHHHHHHHHHHHHHhcC-HHHhc-
Confidence 7777777632 110 111222 255555444 333 244666778888887776432 23455
Q ss_pred ccCcHHHH-HHHhccCChHHHHHHHHHHHHhccc
Q 017249 234 SDGGILTL-VETVEDGSLVSTQHAVGALLSLCQS 266 (375)
Q Consensus 234 ~~g~v~~L-v~lL~~~~~~~~~~a~~~L~~l~~~ 266 (375)
+.+.++.| ..+| .++..+..|+.+|..+...
T Consensus 245 ~~~ll~~L~~~~L--~~~~~r~aA~dcL~eIv~k 276 (1073)
T 3gjx_A 245 ETKLISTLIYKFL--NVPMFRNVSLKCLTEIAGV 276 (1073)
T ss_dssp SSSHHHHHHHHTS--SSHHHHHHHHHHHHHHHHS
T ss_pred cchHHHHHHHHhc--CChHHHHHHHHHHHHHHhc
Confidence 56788877 4666 4678999999999998764
No 125
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=91.10 E-value=3.2 Score=38.02 Aligned_cols=120 Identities=14% Similarity=0.160 Sum_probs=84.4
Q ss_pred hHHHHHHHHHHHHhhCChhhhHHHhhccCcHHHHHHHhccCChHHHHHHHHHHHHhcccCcHHH-HHHH----------H
Q 017249 208 SKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKY-RQLI----------L 276 (375)
Q Consensus 208 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~-~~~l----------~ 276 (375)
......++.+|..+..+..+...++.+..++..|...|.+.++.++..++..|..+|....+++ ...+ .
T Consensus 72 ~~~~~~~l~CLkalmN~~~Gl~~vl~~~~~i~~l~~sL~s~~~~~r~~vleLL~alc~~~~~~G~~~~VL~Al~~~~~~~ 151 (386)
T 2bnx_A 72 SRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMD 151 (386)
T ss_dssp HHHHHHHHHHHHHHTSSHHHHHHHHHSSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHhC
Confidence 3456778999999999999999999888899999999998889999999999988887653122 1111 1
Q ss_pred HcCChHHHHHHhh-hCCHHHHHHHHHHHHHhhcCChh---------hhhhhhhHHHHHHHHh
Q 017249 277 KEGAIPGLLRLTV-EGTFEAQERARTLLDLLRDTPQE---------KRLSSSVLEKIVYDIA 328 (375)
Q Consensus 277 ~~g~v~~L~~ll~-~~~~~~~~~A~~~L~~l~~~~~~---------~~~~~g~~~~l~~~l~ 328 (375)
+..-...++..+. +.+.+.+..+...+..+...++. ++...|..+ ++..|.
T Consensus 152 e~~RF~~lv~~l~~~~~~e~~~a~m~lIN~lv~~~~dl~~R~~LR~Ef~~~GL~~-il~~Lr 212 (386)
T 2bnx_A 152 EVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLHQ-VLQELR 212 (386)
T ss_dssp TSCTTHHHHHHTSTTSCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTHHH-HHHHHT
T ss_pred chhhHHHHHHHHHcCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCChHH-HHHHHh
Confidence 2235566777666 45566666666677777666632 445566555 556665
No 126
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=90.58 E-value=1.8 Score=40.52 Aligned_cols=122 Identities=19% Similarity=0.163 Sum_probs=80.8
Q ss_pred CCChHHHHHHHHHHHHhhccCCChhHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCCCCchhhhhcCCcHHHHHH
Q 017249 121 FQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINL 200 (375)
Q Consensus 121 ~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~l 200 (375)
++++..+..|+..+.....+-+. ....++..+++++.+.+..++..|...|..+|.+ ++...+ ...|+++
T Consensus 39 kg~~k~K~LaaQ~I~kffk~FP~----l~~~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~-~~i~ki-----aDvL~Ql 108 (507)
T 3u0r_A 39 KGGTKEKRLAAQFIPKFFKHFPE----LADSAINAQLDLCEDEDVSIRRQAIKELPQFATG-ENLPRV-----ADILTQL 108 (507)
T ss_dssp GSCHHHHHHHHHHHHHHGGGCGG----GHHHHHHHHHHHHTCSSHHHHHHHHHHGGGGCCT-TCHHHH-----HHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhhChh----hHHHHHHHHHHHHhcccHHHHHHHHHhhHHHhhh-hhhhhH-----HHHHHHH
Confidence 44688888888888887665432 2345688999999999999999999999999987 554443 4578888
Q ss_pred hhhcccchHHHHHHHHHHHHhhCChhhhHHHhhccCcHHHHHHHhccCChHHHHHHHHHHHH
Q 017249 201 LKDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLS 262 (375)
Q Consensus 201 l~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~ 262 (375)
|.+.... . ....-.+|..+-... ..+.+..|...+..+++.+|+.++..|..
T Consensus 109 Lqtdd~~-E-~~~V~~sL~sllk~D--------pk~tl~~lf~~i~~~~e~~Rer~lkFi~~ 160 (507)
T 3u0r_A 109 LQTDDSA-E-FNLVNNALLSIFKMD--------AKGTLGGLFSQILQGEDIVRERAIKFLST 160 (507)
T ss_dssp TTCCCHH-H-HHHHHHHHHHHHHHC--------HHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HhccchH-H-HHHHHHHHHHHHhcC--------hHHHHHHHHHHHcccchHHHHHHHHHHHH
Confidence 8865322 1 222333333332111 12445556666666678888888887753
No 127
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=89.82 E-value=0.81 Score=35.39 Aligned_cols=72 Identities=11% Similarity=0.139 Sum_probs=59.7
Q ss_pred cHHHHHHHhccCChHHHHHHHHHHHHhcccCcHHHHHHHHHcCChHHHHHHhhhCCHHHHHHHHHHHHHhhc
Q 017249 237 GILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRD 308 (375)
Q Consensus 237 ~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~~~~~A~~~L~~l~~ 308 (375)
++..|...|.++++.++..|+.+|-.+..+++......+.+..++..|+.++...++.|++....++..-+.
T Consensus 43 a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~~~~~Vk~kil~li~~W~~ 114 (140)
T 3ldz_A 43 CLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEWTD 114 (140)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhccCCHHHHHHHHHHHHHHHH
Confidence 556677778888999999999999999888876666677677788888888888899999999998876654
No 128
>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}
Probab=89.27 E-value=7.9 Score=33.90 Aligned_cols=110 Identities=16% Similarity=0.073 Sum_probs=76.8
Q ss_pred hHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhc--CChHHHHHhhCC-------CCHHHHHHHHHHHH
Q 017249 23 KQALIEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAA--GVVQPLVLMLVS-------PNLDAIESSLLALL 93 (375)
Q Consensus 23 ~~~~l~~Lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~--g~v~~Lv~~L~~-------~~~~~~~~a~~~L~ 93 (375)
+...+..|+ +..+.++..+..|+++|....+++ |...+.+.+. ..+..++.-|.. ....+++.-+.+|.
T Consensus 69 ef~lL~nL~-~~~~~~~~~rE~aarII~ssLRNN-P~Al~~V~~~~p~fv~~lf~~L~~~~~~~~~~~~~l~KR~LsII~ 146 (315)
T 3qml_C 69 EFALLANLS-LNENLPLTLRELSTRVITSCLRNN-PPVVEFINESFPNFKSKIMAALSNLNDSNHRSSNILIKRYLSILN 146 (315)
T ss_dssp HHHHHHHHH-HCTTSCHHHHHHHHHHHHHHHTTC-HHHHHHHHHHCTTHHHHHHHHHHHHHCC--CCCHHHHHHHHHHHH
T ss_pred cHHHHHHHH-hhccCChhHHHHHHHHHHHHHccC-HHHHHHHHHhChhHHHHHHHHHHHHhhcccchhHHHHHHHHHHHH
Confidence 344455555 334567788999999999999999 6666666543 566666655432 24467778888999
Q ss_pred HhhccChhhHHHHHHcCChHHHHHhhcCC--ChHHHHHHHHHHHHhhc
Q 017249 94 NLAVRNERNKVKIATAGAIPPLVELLKFQ--NGTLRELAAAAILTLSA 139 (375)
Q Consensus 94 ~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~--~~~~~~~a~~~L~~Ls~ 139 (375)
.|..++... ...++..|.+++... ++.++..++..+..+-.
T Consensus 147 ~L~~~~~~F-----~~~~m~~L~~ly~~~~~d~~~k~Kvl~li~d~f~ 189 (315)
T 3qml_C 147 ELPVTSEDL-----PIYSTVVLQNVYERNNKDKQLQIKVLELISKILK 189 (315)
T ss_dssp HSCCCSTTC-------CCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred HHhcChHhh-----hhccHHHHHHHHccCCCCHHHHHHHHHHHHHHcc
Confidence 999854323 255778888888776 88999988888877653
No 129
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=88.85 E-value=1 Score=35.82 Aligned_cols=73 Identities=8% Similarity=0.092 Sum_probs=59.5
Q ss_pred CcHHHHHHHhccCChHHHHHHHHHHHHhcccCcHHHHHHHHHcCChHHHHHHhhh-CCHHHHHHHHHHHHHhhc
Q 017249 236 GGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVE-GTFEAQERARTLLDLLRD 308 (375)
Q Consensus 236 g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~g~v~~L~~ll~~-~~~~~~~~A~~~L~~l~~ 308 (375)
.++..|...|.++++.++..|+.+|-.+..++.......+.+..++..|+.++.. .++.|++.+..++..-..
T Consensus 52 eA~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~~ 125 (163)
T 1x5b_A 52 DCLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWSE 125 (163)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHH
Confidence 3556677788889999999999999999998776777777777888889888875 678999999998776654
No 130
>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*
Probab=88.48 E-value=12 Score=33.56 Aligned_cols=173 Identities=11% Similarity=0.089 Sum_probs=114.4
Q ss_pred HHHHHHHhccCCCCchhhhhcCCcHHHHHHhhhcccchHHHHHHHHHHHHhhCChhhhHHHhhccCcHHHHHHHhc-cCC
Q 017249 171 AVTALHYLSTCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVE-DGS 249 (375)
Q Consensus 171 a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~Lv~lL~-~~~ 249 (375)
+...|.-|..+.+...-++..+++..+..++.-.+ ..+.++.+..|...+....-...=+ ...+|.++..+. +++
T Consensus 263 ~FDLL~LLmHdSnAIDGFVk~DGv~~I~TvinYpN--~~l~RaG~KLLLQVSDaksL~~t~L--~e~LPFi~~~i~~h~e 338 (619)
T 3c2g_A 263 TFDLLGLLLHDSDAIDGFVRSDGVGAITTVVQYPN--NDLIRAGCKLLLQVSDAKALAKTPL--ENILPFLLRLIEIHPD 338 (619)
T ss_dssp HHHHHHHHCCSHHHHHHHHHTTHHHHHHHHTTSSC--HHHHHHHHHHHHHHTTCGGGGTSCC--TTHHHHHHHHHHHCCC
T ss_pred HHHHHHHHhcccccccceeecccceeEEEEeecCC--cHHHHhhhheeeeecchHHHhhccc--cccchHHHHHhccCCC
Confidence 33333333344455677888899999988888763 3577778888888876665554433 367888888885 678
Q ss_pred hHHHHHHHHHHHHhcccCcHHHHHHHHHcCChHHHHHHhhhC-------CHHHHHHHHHHHHHhhc-------------C
Q 017249 250 LVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEG-------TFEAQERARTLLDLLRD-------------T 309 (375)
Q Consensus 250 ~~~~~~a~~~L~~l~~~~~~~~~~~l~~~g~v~~L~~ll~~~-------~~~~~~~A~~~L~~l~~-------------~ 309 (375)
+.+.-...+.|.|...+. .-.++..+..|+++.|.+.+... +..-++.|+.+++++-+ +
T Consensus 339 DdvvYSGTGFLSNVVAHK-q~VKelAI~~nAI~LLh~~I~ky~~Lsdf~ea~Kkk~aC~IicN~LRalNNFLMmWIPm~N 417 (619)
T 3c2g_A 339 DEVIYSGTGFLSNVVAHK-QHVKDIAIRSNAIFLLHTIISKYPRLDELTDAPKRNRVCEIICNCLRTLNNFLMMWIPTPN 417 (619)
T ss_dssp HHHHHHHHHHHHHHSTTC-HHHHHHHHHTTHHHHHHHHHHTSCCGGGCCSHHHHHHHHHHHHHHHHHHHHHHGGGSCCTT
T ss_pred cceEEecchHHHHHHhcc-cchHHHHhccCcHHHHHHHHhhCCChhhhhhhhhhcchHHHHHHHHHHHhhheeEEEecCC
Confidence 889999999999999987 44566667899999998866532 23445566666655421 0
Q ss_pred C---------hh---hhhhhhhHHHHHHHHhhcCCChHHHHHHHHHHHHHH
Q 017249 310 P---------QE---KRLSSSVLEKIVYDIAARVDGADKAAETAKRLLQDM 348 (375)
Q Consensus 310 ~---------~~---~~~~~g~~~~l~~~l~~~~~g~~~~~~~a~~~l~~l 348 (375)
. ++ +.++.+++..|+.-|....=.++-..+--..+|+-+
T Consensus 418 Gqr~~~G~~EqQQVckFIE~d~LKrLMtCLS~e~fDv~~LlELRSTILR~F 468 (619)
T 3c2g_A 418 GETKTAGPNEKQQVCKFIEIDILKKLMSCLSCEGMDTPGLLELRSTILRSF 468 (619)
T ss_dssp SCCCCCCHHHHHHHHGGGSHHHHHHHHHHHHCCC-CCTTHHHHHHHHHHHH
T ss_pred CccccCChHHHHHHHHHHHHHHHHHHHHHhcccccCcchHHHHHHHHHHHH
Confidence 0 11 566778888888877633323344444444555544
No 131
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=87.87 E-value=12 Score=39.21 Aligned_cols=215 Identities=10% Similarity=0.048 Sum_probs=131.9
Q ss_pred ChHHHHHhhCCCCHHHHHHHHHHHHHhhccChhhHHHHHHcCChHHHHHhhc-CCChHHHHHHHHHHHHhhccC-----C
Q 017249 69 VVQPLVLMLVSPNLDAIESSLLALLNLAVRNERNKVKIATAGAIPPLVELLK-FQNGTLRELAAAAILTLSAAA-----P 142 (375)
Q Consensus 69 ~v~~Lv~~L~~~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~-~~~~~~~~~a~~~L~~Ls~~~-----~ 142 (375)
.++.++..+.+++.+.+.+|-..|..+-. +++... .+..+|. +.++.+|..|+.+|.+..... +
T Consensus 29 ~Le~lv~~ly~p~~~~r~qA~~~L~q~q~-sp~aw~---------~~~~iL~~s~~~~vR~fAa~~L~~~I~~~W~~L~~ 98 (1073)
T 3gjx_A 29 LLDNVVNCLYHGEGAQQRMAQEVLTHLKE-HPDAWT---------RVDTILEFSQNMNTKYYGLQILENVIKTRWKILPR 98 (1073)
T ss_dssp HHHHHHHTTTCSSHHHHHHHHHHHHTSSC-CSCHHH---------HHTCC---CCSHHHHHHHHHHHHHHHHHTGGGSCH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHc-CchHHH---------HHHHHhcCCCCHHHHHHHHHHHHHHHHhhhhhCCH
Confidence 36667777777788888888888888766 454433 3334443 348899999999999876531 1
Q ss_pred ChhHHHhcCChHHHHHHhcc-----CCHHHHHHHHHHHHHhccC--CCCchhhhhcCCcHHHHHHhhhcccchHHHHHHH
Q 017249 143 NKPAIAASGAAPLLVQILHS-----GSVQGRVDAVTALHYLSTC--KENSSPILDATAVPPLINLLKDCKKYSKFAEKAT 215 (375)
Q Consensus 143 ~~~~i~~~~~l~~L~~lL~~-----~~~~~~~~a~~~L~~L~~~--~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~ 215 (375)
..........+..+...-.+ .++.++...+.++..++.. ++.. .+.++.++..+..+ ....+..+
T Consensus 99 e~~~~LR~~Ll~~l~~~~~~~~~~e~~~~vinKLa~~La~I~k~~~P~~W-----p~fi~dLv~~~~~~---~~~~~~~L 170 (1073)
T 3gjx_A 99 NQCEGIKKYVVGLIIKTSSDPTCVEKEKVYIGKLNMILVQILKQEWPKHW-----PTFISDIVGASRTS---ESLCQNNM 170 (1073)
T ss_dssp HHHHHHHHHHHHHHHHHHTCGGGGTSCHHHHHHHHHHHHHHHHHHTTTTC-----TTHHHHHHHHHHHC---HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHccCccccccchHHHHHHHHHHHHHHHHhChhhc-----cHHHHHHHHHhCCC---HHHHHHHH
Confidence 11111223334444443322 2356677778888887743 3332 23566677776543 23456677
Q ss_pred HHHHHhhCC--h---h----h-----hHHHhhccCcHHHHHHH----hc-cCChHHHHHHHHHHHHhcccCcHHHHHHHH
Q 017249 216 ALLEILSSS--E---E----G-----RIAITNSDGGILTLVET----VE-DGSLVSTQHAVGALLSLCQSCRDKYRQLIL 276 (375)
Q Consensus 216 ~~L~~l~~~--~---~----~-----~~~~~~~~g~v~~Lv~l----L~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~ 276 (375)
.+|..|+.. . . . +..+. . .++.++.+ |. ..++.+...++.+|..+...-+ ...++
T Consensus 171 ~IL~~L~EEV~d~~~~~l~~~r~~~lk~~L~-~--~~~~Il~ll~~iL~~~~~~~lv~~~L~~L~~~~sWI~---i~~i~ 244 (1073)
T 3gjx_A 171 VILKLLSEEVFDFSSGQITQVKAKHLKDSMC-N--EFSQIFQLCQFVMENSQNAPLVHATLETLLRFLNWIP---LGYIF 244 (1073)
T ss_dssp HHHHHHHHHHTTSHHHHBCHHHHHHHHHHHH-H--TCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSC---THHHH
T ss_pred HHHHHHHHHHHhcccccccHHHHHHHHHHHH-H--HHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHhcC---HHHhc
Confidence 777776532 0 0 1 11222 1 14444443 43 3567778888999999888763 34577
Q ss_pred HcCChHHHH-HHhhhCCHHHHHHHHHHHHHhhcC
Q 017249 277 KEGAIPGLL-RLTVEGTFEAQERARTLLDLLRDT 309 (375)
Q Consensus 277 ~~g~v~~L~-~ll~~~~~~~~~~A~~~L~~l~~~ 309 (375)
+.+.++.|+ .++ .++..+..|+.+|..+.+.
T Consensus 245 ~~~ll~~L~~~~L--~~~~~r~aA~dcL~eIv~k 276 (1073)
T 3gjx_A 245 ETKLISTLIYKFL--NVPMFRNVSLKCLTEIAGV 276 (1073)
T ss_dssp SSSHHHHHHHHTS--SSHHHHHHHHHHHHHHHHS
T ss_pred cchHHHHHHHHhc--CChHHHHHHHHHHHHHHhc
Confidence 788888774 444 5789999999999988654
No 132
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=87.64 E-value=1.1 Score=35.01 Aligned_cols=73 Identities=14% Similarity=0.103 Sum_probs=60.0
Q ss_pred CcHHHHHHHhccCChHHHHHHHHHHHHhcccCcHHHHHHHHHcCChHHHHHHhhh------CCHHHHHHHHHHHHHhhc
Q 017249 236 GGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVE------GTFEAQERARTLLDLLRD 308 (375)
Q Consensus 236 g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~g~v~~L~~ll~~------~~~~~~~~A~~~L~~l~~ 308 (375)
.++..|..-|.++++.++..|+.+|-.+..+++......+.+..++..|+.++.. .++.|++.+..++..-+.
T Consensus 38 ~a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 116 (148)
T 1mhq_A 38 HAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWTV 116 (148)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 3566777788899999999999999999998877777778788899999988863 478999999888776654
No 133
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=87.40 E-value=1.4 Score=34.35 Aligned_cols=72 Identities=13% Similarity=0.140 Sum_probs=60.3
Q ss_pred cHHHHHHHhccCChHHHHHHHHHHHHhcccCcHHHHHHHHHcCChHHHHHHhh------hCCHHHHHHHHHHHHHhhc
Q 017249 237 GILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTV------EGTFEAQERARTLLDLLRD 308 (375)
Q Consensus 237 ~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~g~v~~L~~ll~------~~~~~~~~~A~~~L~~l~~ 308 (375)
++..|...|.+.++.++..|+.+|-.+..+++......+.+..++..|+.++. ..++.|++....++..-+.
T Consensus 49 a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 126 (149)
T 3g2s_A 49 ATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTV 126 (149)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHHH
Confidence 56677778888999999999999999999887777777777889999999885 3578999999998887764
No 134
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=87.00 E-value=2.7 Score=32.72 Aligned_cols=76 Identities=14% Similarity=0.069 Sum_probs=62.3
Q ss_pred hHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCC------CCHHHHHHHHHHHHHhh
Q 017249 23 KQALIEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVS------PNLDAIESSLLALLNLA 96 (375)
Q Consensus 23 ~~~~l~~Lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~------~~~~~~~~a~~~L~~L~ 96 (375)
..+++..+.+.|++.++.++..|+..|-.+..+.-+.....+.+..++..|+.++.. .+..++...+..+...+
T Consensus 36 ~k~a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 115 (148)
T 1mhq_A 36 PTHAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWT 115 (148)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHH
Confidence 456778888889999999999999999999988634556666677899999999874 47899999999988887
Q ss_pred cc
Q 017249 97 VR 98 (375)
Q Consensus 97 ~~ 98 (375)
..
T Consensus 116 ~~ 117 (148)
T 1mhq_A 116 VW 117 (148)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 135
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=86.57 E-value=1.8 Score=33.39 Aligned_cols=75 Identities=8% Similarity=0.046 Sum_probs=58.2
Q ss_pred hHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhc
Q 017249 23 KQALIEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIESSLLALLNLAV 97 (375)
Q Consensus 23 ~~~~l~~Lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~~~~~~~~~a~~~L~~L~~ 97 (375)
..+++..+.+.|.+.++.++..|+..|-.+..+.-+.....+.+..++..|+.+++..++.++...+..+...+.
T Consensus 40 ~k~a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~~~~~Vk~kil~li~~W~~ 114 (140)
T 3ldz_A 40 PKDCLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEWTD 114 (140)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhccCCHHHHHHHHHHHHHHHH
Confidence 345677788888899999999999999888877623344455555778888888877788999999988887764
No 136
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=86.46 E-value=1.4 Score=35.32 Aligned_cols=73 Identities=11% Similarity=0.131 Sum_probs=59.6
Q ss_pred cHHHHHHHhccCChHHHHHHHHHHHHhcccCcHHHHHHHHHcCChHHHHHHhhh------CCHHHHHHHHHHHHHhhcC
Q 017249 237 GILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVE------GTFEAQERARTLLDLLRDT 309 (375)
Q Consensus 237 ~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~g~v~~L~~ll~~------~~~~~~~~A~~~L~~l~~~ 309 (375)
++..|...|.++++.++..|+.+|-.+..+++......+.+..++..|+.++.. .++.|++.+..++..-+..
T Consensus 51 A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~ 129 (171)
T 1juq_A 51 AVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWTMA 129 (171)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHHH
Confidence 556777888889999999999999999998866677777778899999998852 4689999999988766543
No 137
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=86.40 E-value=2.5 Score=33.52 Aligned_cols=74 Identities=5% Similarity=0.034 Sum_probs=59.2
Q ss_pred HhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCC-CCHHHHHHHHHHHHHhhc
Q 017249 24 QALIEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVS-PNLDAIESSLLALLNLAV 97 (375)
Q Consensus 24 ~~~l~~Lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~-~~~~~~~~a~~~L~~L~~ 97 (375)
.+++..|.+.|++.++.++..|+..|-.+..+.-+.....+.+..++..|+.++.. .++.|+..++..+...+.
T Consensus 51 keA~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~~ 125 (163)
T 1x5b_A 51 KDCLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWSE 125 (163)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHH
Confidence 46778888888999999999999999999888634455566666788888888865 578999999988887774
No 138
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=86.31 E-value=3.2 Score=32.35 Aligned_cols=76 Identities=13% Similarity=0.097 Sum_probs=61.5
Q ss_pred hHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCC------CCHHHHHHHHHHHHHhh
Q 017249 23 KQALIEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVS------PNLDAIESSLLALLNLA 96 (375)
Q Consensus 23 ~~~~l~~Lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~------~~~~~~~~a~~~L~~L~ 96 (375)
..+++..|...|++.++.++..|+..|-.+..+.-+.....+....++..|+.+++. .+..++...+..+...+
T Consensus 46 pk~a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 125 (149)
T 3g2s_A 46 PPLATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWT 125 (149)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHH
Confidence 345778888889999999999999999999887734455566667889999999864 57899999999998887
Q ss_pred cc
Q 017249 97 VR 98 (375)
Q Consensus 97 ~~ 98 (375)
..
T Consensus 126 ~~ 127 (149)
T 3g2s_A 126 VG 127 (149)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 139
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=84.28 E-value=3.5 Score=32.95 Aligned_cols=75 Identities=11% Similarity=0.108 Sum_probs=60.6
Q ss_pred HhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCC------CCHHHHHHHHHHHHHhhc
Q 017249 24 QALIEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVS------PNLDAIESSLLALLNLAV 97 (375)
Q Consensus 24 ~~~l~~Lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~------~~~~~~~~a~~~L~~L~~ 97 (375)
.+++..|.+.|++.++.++..|+..|-.+..+..+.....+.+..++..|+.++.. .+..|+..++..+...+.
T Consensus 49 k~A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 128 (171)
T 1juq_A 49 QIAVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWTM 128 (171)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 45677888888999999999999999999988623455566667889999999863 368999999999988875
Q ss_pred c
Q 017249 98 R 98 (375)
Q Consensus 98 ~ 98 (375)
.
T Consensus 129 ~ 129 (171)
T 1juq_A 129 A 129 (171)
T ss_dssp H
T ss_pred H
Confidence 4
No 140
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=83.58 E-value=18 Score=30.45 Aligned_cols=142 Identities=15% Similarity=0.044 Sum_probs=89.9
Q ss_pred HHHHHhhcCCChHHHHHHHHHHHHhhccCCChhHHHhcCChHHHHH-HhccCCHHHHHHHHHHHHHhcc--CCCCchhhh
Q 017249 113 PPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQ-ILHSGSVQGRVDAVTALHYLST--CKENSSPIL 189 (375)
Q Consensus 113 ~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~l~~L~~-lL~~~~~~~~~~a~~~L~~L~~--~~~~~~~i~ 189 (375)
+....+..++..++|..|+.+|..+ . . ....++.+.. +-.+.+-.+++.++.++..++. +++
T Consensus 74 ~la~~L~~~~~deVR~~Av~lLg~~-~--~------~~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe------ 138 (240)
T 3l9t_A 74 KLAFLAYQSDVYQVRMYAVFLFGYL-S--K------DKEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYK------ 138 (240)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHT-T--T------SHHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTT------
T ss_pred HHHHHHHhCcchHHHHHHHHHHHhc-c--C------cHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHH------
Confidence 3445556677889999999988777 2 1 1234566666 4556678999999999998874 333
Q ss_pred hcCCcHHHHHHhhhcccchHHHHHHHHHHHHhhCChhhhHHHhhccCcHHHHHHHhccCChHHHHHHHHHHHHhcccCcH
Q 017249 190 DATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRD 269 (375)
Q Consensus 190 ~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~ 269 (375)
..++.+.....++ +..++..|...+.--+..+.. .....-+++.|-.+..+++.-+|....+.|..++..+ |
T Consensus 139 --~~l~~~~~W~~d~--n~~VRR~Ase~~rpW~~~~~~---k~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~~-P 210 (240)
T 3l9t_A 139 --KALPIIDEWLKSS--NLHTRRAATEGLRIWTNRPYF---KENPNEAIRRIADLKEDVSEYVRKSVGNALRDISKKF-P 210 (240)
T ss_dssp --TTHHHHHHHHHCS--SHHHHHHHHHHTCSGGGSTTT---TTCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTTC-H
T ss_pred --HHHHHHHHHhcCC--CHHHHHHHHHhhHHHhccchh---hcCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhC-H
Confidence 1456677777665 446777666554432222111 1101123444445556788999999999999999988 4
Q ss_pred HHHHHHHH
Q 017249 270 KYRQLILK 277 (375)
Q Consensus 270 ~~~~~l~~ 277 (375)
+....+++
T Consensus 211 d~V~~~~~ 218 (240)
T 3l9t_A 211 DLVKIELK 218 (240)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44444444
No 141
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=82.14 E-value=4 Score=31.38 Aligned_cols=74 Identities=11% Similarity=0.116 Sum_probs=56.4
Q ss_pred cHHHHHHHhccCChHHHHHHHHHHHHhcccCcHHHHHHHHH-cCChHHHHHHhhhCC--------HHHHHHHHHHHHHhh
Q 017249 237 GILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILK-EGAIPGLLRLTVEGT--------FEAQERARTLLDLLR 307 (375)
Q Consensus 237 ~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~-~g~v~~L~~ll~~~~--------~~~~~~A~~~L~~l~ 307 (375)
+++.|..-|.+.++.++-.|+.+|..||....+..+..+.+ ...|..+..+-.-.+ ..||+.|..++..|.
T Consensus 50 im~~L~kRL~~k~~~vk~KaL~lL~yL~~~Gs~~f~~~~r~~~~~Ik~l~~F~g~~dp~~G~d~g~~VR~~AkEl~~ll~ 129 (140)
T 1vdy_A 50 FSEFILKRLDNKSPIVKQKALRLIKYAVGKSGSEFRREMQRNSVAVRNLFHYKGHPDPLKGDALNKAVRETAHETISAIF 129 (140)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHTTHHHHTTTTCCCCCCTTTSSCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCCcceeehHHHHHHHHHHhCCHHHHHHHHHhHHHHHHHHhcCCCCCcccccchhHHHHHHHHHHHHHHh
Confidence 56678888888889999999999999998877777777766 345666655332222 679999999999987
Q ss_pred cCC
Q 017249 308 DTP 310 (375)
Q Consensus 308 ~~~ 310 (375)
...
T Consensus 130 d~~ 132 (140)
T 1vdy_A 130 SEE 132 (140)
T ss_dssp CCS
T ss_pred CcC
Confidence 655
No 142
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=81.82 E-value=20 Score=32.66 Aligned_cols=105 Identities=15% Similarity=0.207 Sum_probs=70.9
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhc-------
Q 017249 25 ALIEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIESSLLALLNLAV------- 97 (375)
Q Consensus 25 ~~l~~Lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~~~~~~~~~a~~~L~~L~~------- 97 (375)
++++.++.+-.+.+.+++...+.+|...+... .+... ..++.|..+|.++++.+.+.++.+..++-.
T Consensus 63 ~fl~~il~f~~d~~~~vRk~~a~FieEa~~~~-~el~~-----~~l~~L~~LL~d~d~~V~K~~I~~~tslYpl~f~~i~ 136 (386)
T 3o2t_A 63 NFLDEIIAFQADKSIEVRKFVIGFIEEACKRD-IELLL-----KLIANLNMLLRDENVNVVKKAILTMTQLYKVALQWMV 136 (386)
T ss_dssp GGHHHHHGGGGCSCHHHHHHHHHHHHHHHHHC-GGGHH-----HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCcHHHHHHHHHHHHHHHHHH-HHHHH-----HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 67888888888889999999999999998876 44433 247788888998899998888877766541
Q ss_pred -cC------hhhHHHHHHcCChHHHHHhhcCCChHHHHHHHHHHHHh
Q 017249 98 -RN------ERNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTL 137 (375)
Q Consensus 98 -~~------~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L 137 (375)
.. ...+..+.. .-..++.++.+.+..++..++..+-.+
T Consensus 137 ~~~~~~~~~e~~W~~m~~--lK~~Il~~~ds~n~GVrl~aiKFle~V 181 (386)
T 3o2t_A 137 KSRVISELQEACWDMVSA--MAGDIILLLDSDNDGIRTHAIKFVEGL 181 (386)
T ss_dssp HC-CCCHHHHHHHHHHHH--HHHHHHHGGGCSSHHHHHHHHHHHHHH
T ss_pred cCCCcchhHHHHHHHHHH--HHHHHHHHhccCCcchHHHHHHHHHHH
Confidence 10 122222222 122445555666777776666665553
No 143
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=78.78 E-value=30 Score=29.51 Aligned_cols=141 Identities=11% Similarity=0.076 Sum_probs=93.5
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhccChhhHHHHH
Q 017249 28 EELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIESSLLALLNLAVRNERNKVKIA 107 (375)
Q Consensus 28 ~~Lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~~~~~~~~~a~~~L~~L~~~~~~~r~~i~ 107 (375)
-.|+..-+....+.+...+.-...++.+..+..-. .+++.++++..+.+.+++...+..|...+...++.-..
T Consensus 18 ~~lln~A~~~~~~~kl~~L~qa~el~~~~dp~ll~-----~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~k~~l~~~-- 90 (257)
T 3gs3_A 18 VDWCNELVIASPSTKCELLAKVQETVLGSCAELAE-----EFLESVLSLAHDSNMEVRKQVVAFVEQVCKVKVELLPH-- 90 (257)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHHTTTTGGGHH-----HHHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGGGHHH--
T ss_pred HHHHHHhhhcCcHHHHHHHHHHHHHHHccCHhHHH-----HHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 33444333433479999999999987765233333 34778888877888999999999999988665544333
Q ss_pred HcCChHHHHHhhcCCChHHHHHHHHHHHHhh--------ccCCCh---hHH--HhcCChHHHHHHhccCCHHHHHHHHHH
Q 017249 108 TAGAIPPLVELLKFQNGTLRELAAAAILTLS--------AAAPNK---PAI--AASGAAPLLVQILHSGSVQGRVDAVTA 174 (375)
Q Consensus 108 ~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls--------~~~~~~---~~i--~~~~~l~~L~~lL~~~~~~~~~~a~~~ 174 (375)
.++.|..++++.++.+.+.++.+..++- .++... ... .-...=..++.++.+.+..++..++..
T Consensus 91 ---~l~~L~~Ll~d~d~~V~K~~I~~~~~iY~~~l~~i~~~~~~~~~~~~~W~~m~~lK~~Il~~~~s~n~gvkl~~iKF 167 (257)
T 3gs3_A 91 ---VINVVSMLLRDNSAQVIKRVIQACGSIYKNGLQYLCSLMEPGDSAEQAWNILSLIKAQILDMIDNENDGIRTNAIKF 167 (257)
T ss_dssp ---HHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHTTSSSCCHHHHHHHHHHHHHHHHHHHGGGSSCHHHHHHHHHH
T ss_pred ---HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHH
Confidence 3668888898889999888888766642 332211 000 011223346666777888888888877
Q ss_pred HHHh
Q 017249 175 LHYL 178 (375)
Q Consensus 175 L~~L 178 (375)
+..+
T Consensus 168 ~e~v 171 (257)
T 3gs3_A 168 LEGV 171 (257)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6654
No 144
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=78.28 E-value=5.9 Score=30.44 Aligned_cols=74 Identities=22% Similarity=0.140 Sum_probs=51.7
Q ss_pred HhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhc-CChHHHHHhhCCCC--------HHHHHHHHHHHHH
Q 017249 24 QALIEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAA-GVVQPLVLMLVSPN--------LDAIESSLLALLN 94 (375)
Q Consensus 24 ~~~l~~Lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~-g~v~~Lv~~L~~~~--------~~~~~~a~~~L~~ 94 (375)
...+..|.+.|...++.++.+|+.+|..|+...++..+..+.+. ..|+.+.++=..++ ..|+..|-.++..
T Consensus 48 ~eim~~L~kRL~~k~~~vk~KaL~lL~yL~~~Gs~~f~~~~r~~~~~Ik~l~~F~g~~dp~~G~d~g~~VR~~AkEl~~l 127 (140)
T 1vdy_A 48 KEFSEFILKRLDNKSPIVKQKALRLIKYAVGKSGSEFRREMQRNSVAVRNLFHYKGHPDPLKGDALNKAVRETAHETISA 127 (140)
T ss_dssp HHHHHHHHHHHTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHTTHHHHTTTTCCCCCCTTTSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCcceeehHHHHHHHHHHhCCHHHHHHHHHhHHHHHHHHhcCCCCCcccccchhHHHHHHHHHHHHH
Confidence 56788899999988999999999999999988767777766655 33444443332222 4566666666555
Q ss_pred hhc
Q 017249 95 LAV 97 (375)
Q Consensus 95 L~~ 97 (375)
|..
T Consensus 128 l~d 130 (140)
T 1vdy_A 128 IFS 130 (140)
T ss_dssp HTC
T ss_pred HhC
Confidence 543
No 145
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=77.60 E-value=42 Score=30.53 Aligned_cols=140 Identities=14% Similarity=0.106 Sum_probs=92.8
Q ss_pred HHHHHHhc----CCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhccChhhH
Q 017249 28 EELSDKLI----NGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIESSLLALLNLAVRNERNK 103 (375)
Q Consensus 28 ~~Lv~~L~----s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~~~~~~~~~a~~~L~~L~~~~~~~r 103 (375)
.+++++|+ .++ +.+...+.-+.++..+..+.. =..+++.++++-.+.+.+++...+..|...+....+.-
T Consensus 25 ~~v~~lln~A~~~~~-~~Kl~~L~q~~EL~l~~dpsL-----l~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~~~el~ 98 (386)
T 3o2t_A 25 ERVVDLLNQAALITN-DSKITVLKQVQELIINKDPTL-----LDNFLDEIIAFQADKSIEVRKFVIGFIEEACKRDIELL 98 (386)
T ss_dssp HHHHHHHHHHHHCCS-THHHHHHHHHHHHHHTTCGGG-----GGGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGGGH
T ss_pred HHHHHHHHhhhccCh-HHHHHHHHHHHHHHhccCHHH-----HHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555554 233 579999999999866541321 14679999999999999999999999998887555443
Q ss_pred HHHHHcCChHHHHHhhcCCChHHHHHHHHHHHHhh--------ccCCCh-----hHHHhcCChHHHHHHhccCCHHHHHH
Q 017249 104 VKIATAGAIPPLVELLKFQNGTLRELAAAAILTLS--------AAAPNK-----PAIAASGAAPLLVQILHSGSVQGRVD 170 (375)
Q Consensus 104 ~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls--------~~~~~~-----~~i~~~~~l~~L~~lL~~~~~~~~~~ 170 (375)
. .+++.|..+|++.++.+.+.++.+..++- .++... ..-.-...-..++.++.+.+..++..
T Consensus 99 ~-----~~l~~L~~LL~d~d~~V~K~~I~~~tslYpl~f~~i~~~~~~~~~~e~~W~~m~~lK~~Il~~~ds~n~GVrl~ 173 (386)
T 3o2t_A 99 L-----KLIANLNMLLRDENVNVVKKAILTMTQLYKVALQWMVKSRVISELQEACWDMVSAMAGDIILLLDSDNDGIRTH 173 (386)
T ss_dssp H-----HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHGGGCSSHHHHHH
T ss_pred H-----HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhccCCcchHHH
Confidence 2 24668888888889999888888776653 222111 00001122234555667778888888
Q ss_pred HHHHHHHh
Q 017249 171 AVTALHYL 178 (375)
Q Consensus 171 a~~~L~~L 178 (375)
++..+..+
T Consensus 174 aiKFle~V 181 (386)
T 3o2t_A 174 AIKFVEGL 181 (386)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88776654
No 146
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=77.24 E-value=4 Score=34.29 Aligned_cols=72 Identities=11% Similarity=0.164 Sum_probs=58.4
Q ss_pred cHHHHHHHhccCChHHHHHHHHHHHHhcccCcHHHHHHHHHcCChHHHHHHhhh-CCHHHHHHHHHHHHHhhc
Q 017249 237 GILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVE-GTFEAQERARTLLDLLRD 308 (375)
Q Consensus 237 ~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~g~v~~L~~ll~~-~~~~~~~~A~~~L~~l~~ 308 (375)
++..|..-|.+.++.++..|+.+|-.+..+.+......+.+..++..|+.++.. .++.|++.+..++..-+.
T Consensus 46 a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 118 (226)
T 3zyq_A 46 AVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKDLLKRQVEVNVRNKILYLIQAWAH 118 (226)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 456677778889999999999999999888766667777777888888887764 578999999998887664
No 147
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=75.55 E-value=5.2 Score=33.39 Aligned_cols=72 Identities=7% Similarity=0.067 Sum_probs=57.5
Q ss_pred cHHHHHHHhccCChHHHHHHHHHHHHhcccCcHHHHHHHHHcCChHHHHHHhhh-CCHHHHHHHHHHHHHhhc
Q 017249 237 GILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVE-GTFEAQERARTLLDLLRD 308 (375)
Q Consensus 237 ~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~g~v~~L~~ll~~-~~~~~~~~A~~~L~~l~~ 308 (375)
++..|..-|.++++.++..|+.+|-.+..+.+......+.+...+..|+.++.+ .++.+++.+..++..-..
T Consensus 43 a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 115 (220)
T 1dvp_A 43 AFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQTWAY 115 (220)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Confidence 455677778889999999999999999988765666677777788888888764 468999998887776653
No 148
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=73.56 E-value=7.6 Score=30.46 Aligned_cols=72 Identities=11% Similarity=0.252 Sum_probs=55.7
Q ss_pred cHHHHHHHhc-cCChHHHHHHHHHHHHhcccCcHHHHHHHHHcCChHH-HHHHhhh---CCHHHHHHHHHHHHHhhc
Q 017249 237 GILTLVETVE-DGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPG-LLRLTVE---GTFEAQERARTLLDLLRD 308 (375)
Q Consensus 237 ~v~~Lv~lL~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~g~v~~-L~~ll~~---~~~~~~~~A~~~L~~l~~ 308 (375)
++..|...|. ++++.++..|+.+|-.+..+++......+.+...+.. |+.++.. .+..|++.+..++..-+.
T Consensus 54 a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~eva~~~fl~e~Lvk~~~~k~~~~~~Vk~kil~li~~W~~ 130 (157)
T 1elk_A 54 ALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVASQDFVESVLVRTILPKNNPPTIVHDKVLNLIQSWAD 130 (157)
T ss_dssp HHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHTHHHHSTTTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHHHhhHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHH
Confidence 4556777776 4788999999999999999887777777777888887 7887742 346899998888776654
No 149
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=73.53 E-value=42 Score=28.59 Aligned_cols=105 Identities=11% Similarity=0.154 Sum_probs=68.7
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhh--------
Q 017249 25 ALIEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIESSLLALLNLA-------- 96 (375)
Q Consensus 25 ~~l~~Lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~~~~~~~~~a~~~L~~L~-------- 96 (375)
+.++.++.+..+.+.+++...+.+|...+... ++... ..++.|..+|+++++.+.+.++.+..++-
T Consensus 53 ~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~k-~~l~~-----~~l~~L~~Ll~d~d~~V~K~~I~~~~~iY~~~l~~i~ 126 (257)
T 3gs3_A 53 EFLESVLSLAHDSNMEVRKQVVAFVEQVCKVK-VELLP-----HVINVVSMLLRDNSAQVIKRVIQACGSIYKNGLQYLC 126 (257)
T ss_dssp HHHHHHHGGGGCSCHHHHHHHHHHHHHHHHHC-GGGHH-----HHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhccCChHHHHHHHHHHHHHHHHHH-HHHHH-----HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45566666555788999999999999998777 44333 24778888999989999988887666553
Q ss_pred ccC------hhhHHHHHHcCChHHHHHhhcCCChHHHHHHHHHHHHh
Q 017249 97 VRN------ERNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTL 137 (375)
Q Consensus 97 ~~~------~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L 137 (375)
... ...+..+.. .-..++.++.+.+..++..++..+-.+
T Consensus 127 ~~~~~~~~~~~~W~~m~~--lK~~Il~~~~s~n~gvkl~~iKF~e~v 171 (257)
T 3gs3_A 127 SLMEPGDSAEQAWNILSL--IKAQILDMIDNENDGIRTNAIKFLEGV 171 (257)
T ss_dssp TSSSCCHHHHHHHHHHHH--HHHHHHHGGGSSCHHHHHHHHHHHHHH
T ss_pred cCCCCcchHHHHHHHHHH--HHHHHHHHHccCCcchHHHHHHHHHHH
Confidence 211 122333322 123455566666777777776666554
No 150
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=72.43 E-value=6.9 Score=32.80 Aligned_cols=75 Identities=15% Similarity=0.158 Sum_probs=57.6
Q ss_pred hHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCC-CCHHHHHHHHHHHHHhhc
Q 017249 23 KQALIEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVS-PNLDAIESSLLALLNLAV 97 (375)
Q Consensus 23 ~~~~l~~Lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~-~~~~~~~~a~~~L~~L~~ 97 (375)
..+++..|.+.|++.++.++..|+..|-.+..+.-+.....+.+..++..|+.+++. .+..++...+..|...+.
T Consensus 43 ~k~a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 118 (226)
T 3zyq_A 43 AKYAVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKDLLKRQVEVNVRNKILYLIQAWAH 118 (226)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 356788888899999999999999999888877623345555566777778777754 467899999888887764
No 151
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=70.48 E-value=3.7 Score=42.59 Aligned_cols=118 Identities=8% Similarity=-0.007 Sum_probs=73.9
Q ss_pred cHHHHHHHhccCC-hHHHHHHHHHHHHhcccC-cHHHHHHHHH---cCC-----hHHHHHHhhhCCHHHHHHHHHHHHHh
Q 017249 237 GILTLVETVEDGS-LVSTQHAVGALLSLCQSC-RDKYRQLILK---EGA-----IPGLLRLTVEGTFEAQERARTLLDLL 306 (375)
Q Consensus 237 ~v~~Lv~lL~~~~-~~~~~~a~~~L~~l~~~~-~~~~~~~l~~---~g~-----v~~L~~ll~~~~~~~~~~A~~~L~~l 306 (375)
....++.+|.++. .++|+.|..+|.-+.... .......+++ ... ...+-+-. +.+...+..|+-.|..|
T Consensus 844 i~~~v~~~L~D~q~~EVRe~Aa~tLsgll~c~~~~~~~~~li~~f~~~~~~~~~~~~~~~~~-~~~~~~rH~aVLgL~Al 922 (997)
T 1vsy_5 844 ILEFVVSNLYNEQFVEVRVRAASILSDIVHNWKEEQPLLSLIERFAKGLDVNKYTSKERQKL-SKTDIKIHGNVLGLGAI 922 (997)
T ss_dssp THHHHTTTTTCSSCHHHHHHHHHHHHHHHHSCCSHHHHHHHHHHHTTSSTTTSSCHHHHHHH-HHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhccccccccccc-chHHHHHHHHHHHHHHH
Confidence 4556777888999 999999999999886655 3122223322 222 22221111 11124556666788888
Q ss_pred hcCChhhhhhhhhHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHHH
Q 017249 307 RDTPQEKRLSSSVLEKIVYDIAARVDGADKAAETAKRLLQDMVQRSMEL 355 (375)
Q Consensus 307 ~~~~~~~~~~~g~~~~l~~~l~~~~~g~~~~~~~a~~~l~~l~~~s~~~ 355 (375)
-...|..+==...+|.++..|..+..+..-.+..+++++..|.+...|.
T Consensus 923 V~a~Py~vP~P~w~P~~l~~La~~~~~~~~i~~tvk~tlseFkrTH~D~ 971 (997)
T 1vsy_5 923 ISAFPYVFPLPPWIPKNLSNLSSWARTSGMTGNAAKNTISEFKKVRADT 971 (997)
T ss_dssp HTTCSCCSSCCTHHHHHHHHHHTTSSSCSSHHHHTHHHHHHHHHHTSTT
T ss_pred HhhCCCCCCCCcccHHHHHHHHHHhCCCCchHHHHHHHHHHHHhccchh
Confidence 8766532111347777777777666654558899999999998775543
No 152
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=69.35 E-value=19 Score=28.15 Aligned_cols=75 Identities=15% Similarity=0.198 Sum_probs=56.8
Q ss_pred hHhHHHHHHHHhc-CCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHH-HHHhhCC---CCHHHHHHHHHHHHHhhc
Q 017249 23 KQALIEELSDKLI-NGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQP-LVLMLVS---PNLDAIESSLLALLNLAV 97 (375)
Q Consensus 23 ~~~~l~~Lv~~L~-s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~-Lv~~L~~---~~~~~~~~a~~~L~~L~~ 97 (375)
-.+++..|.+.|+ ++++.++..|+..|-.+..+.-+.....+.+..++.. |+.++.. ++..++..++..+...+.
T Consensus 51 ~k~a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~eva~~~fl~e~Lvk~~~~k~~~~~~Vk~kil~li~~W~~ 130 (157)
T 1elk_A 51 PKDALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVASQDFVESVLVRTILPKNNPPTIVHDKVLNLIQSWAD 130 (157)
T ss_dssp HHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHTHHHHSTTTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHHHhhHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHH
Confidence 4556777888887 5889999999999999988763445555666678887 7888743 356889999888887764
No 153
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=68.72 E-value=1.2e+02 Score=31.74 Aligned_cols=196 Identities=15% Similarity=0.069 Sum_probs=104.1
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHHhhccChhhHHHHH----HcCC---hHHHHHhhcCCChHHHHHHHHHHHHhhcc-CCC
Q 017249 72 PLVLMLVSPNLDAIESSLLALLNLAVRNERNKVKIA----TAGA---IPPLVELLKFQNGTLRELAAAAILTLSAA-APN 143 (375)
Q Consensus 72 ~Lv~~L~~~~~~~~~~a~~~L~~L~~~~~~~r~~i~----~~g~---i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~-~~~ 143 (375)
.|+++|+.-+.+-......-+. ..+..|..+. ..|- +..+.+.+.+......+ |+.+|..+... .+.
T Consensus 315 ~Lv~~lR~~~~e~L~~l~~~~~----~~~~~r~~~lDal~~aGT~~a~~~i~~~i~~~~l~~~e-a~~~l~~~~~~~~Pt 389 (1056)
T 1lsh_A 315 RLTAFLRNVDAGVLQSIWHKLH----QQKDYRRWILDAVPAMATSEALLFLKRTLASEQLTSAE-ATQIVASTLSNQQAT 389 (1056)
T ss_dssp HHHHHHTTSCHHHHHHHHHHHT----TSHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCSCHHH-HHHHHHHHHHTCCCC
T ss_pred HHHHHHhcCCHHHHHHHHHHHh----ccHHHHHHHHHHhHhcCCHHHHHHHHHHHHcCCCCHHH-HHHHHHHhhccCCCC
Confidence 4666776665444443333222 1233333333 3333 44555566555433322 44444432221 122
Q ss_pred hhHHHhcCChHHHHHHhccC----CHHHHHHHHHHHHHhc----cCCCCchhhhhcCCcHHHHHHh----hhcccchHHH
Q 017249 144 KPAIAASGAAPLLVQILHSG----SVQGRVDAVTALHYLS----TCKENSSPILDATAVPPLINLL----KDCKKYSKFA 211 (375)
Q Consensus 144 ~~~i~~~~~l~~L~~lL~~~----~~~~~~~a~~~L~~L~----~~~~~~~~i~~~g~i~~Lv~ll----~~~~~~~~~~ 211 (375)
...+..+..++.++ ++.++..++.++..|. .....|. ...++.+.+.+ ...+ ..-.
T Consensus 390 ------~e~l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~c~----~~~v~~i~~~l~~~~~~~~--~~~~ 457 (1056)
T 1lsh_A 390 ------RESLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCP----DELLQPLHDLLSQSSDRAK--EEEI 457 (1056)
T ss_dssp ------HHHHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCC----GGGTHHHHHHHHHHHHTTC--HHHH
T ss_pred ------HHHHHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCCCC----HHHHHHHHHHHHHHHhcCC--hHHH
Confidence 23456667777653 4556666666665554 3323222 12345555444 3332 2334
Q ss_pred HHHHHHHHHhhCChhhhHHHhhccCcHHHHHHHhcc-------CChHHHHHHHHHHHHhcccCcHHHHHHHHHcCChHHH
Q 017249 212 EKATALLEILSSSEEGRIAITNSDGGILTLVETVED-------GSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGL 284 (375)
Q Consensus 212 ~~a~~~L~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~-------~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~g~v~~L 284 (375)
..++.+|+|+- ....++.|..++.. ....++..|+++|..++... ++. +-+.|
T Consensus 458 ~~~LkaLGN~g-----------~p~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~-p~~--------v~~il 517 (1056)
T 1lsh_A 458 VLALKALGNAG-----------QPNSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRD-PRK--------VQEIV 517 (1056)
T ss_dssp HHHHHHHHHHT-----------CGGGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTC-HHH--------HHHHH
T ss_pred HHHHHHhhccC-----------ChhHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhc-hHH--------HHHHH
Confidence 56889999886 23456677777642 13467788999999998664 221 22346
Q ss_pred HHHhh--hCCHHHHHHHHHHHH
Q 017249 285 LRLTV--EGTFEAQERARTLLD 304 (375)
Q Consensus 285 ~~ll~--~~~~~~~~~A~~~L~ 304 (375)
+.+.. ..++++|-.|..+|-
T Consensus 518 ~~i~~n~~e~~EvRiaA~~~Lm 539 (1056)
T 1lsh_A 518 LPIFLNVAIKSELRIRSCIVFF 539 (1056)
T ss_dssp HHHHHCTTSCHHHHHHHHHHHH
T ss_pred HHHhcCCCCChHHHHHHHHHHH
Confidence 66663 467888888887764
No 154
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=67.21 E-value=14 Score=30.68 Aligned_cols=75 Identities=12% Similarity=0.104 Sum_probs=56.7
Q ss_pred hHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCC-CCHHHHHHHHHHHHHhhc
Q 017249 23 KQALIEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVS-PNLDAIESSLLALLNLAV 97 (375)
Q Consensus 23 ~~~~l~~Lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~-~~~~~~~~a~~~L~~L~~ 97 (375)
..+++..|.+.|++.++.++..|+..|-.+..+.-+.....+.+..++..|+.++.+ .+.+++..++..+...+.
T Consensus 40 ~k~a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 115 (220)
T 1dvp_A 40 PKNAFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQTWAY 115 (220)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Confidence 356778888889999999999999999999887622344455555678888877753 467888888888777664
No 155
>3vld_A DNA mismatch repair protein HSM3; heat repeat, RPT1, chaperone; HET: DNA; 2.05A {Saccharomyces cerevisiae} PDB: 3vle_A* 3vlf_A* 4a3v_A* 4a3t_A*
Probab=65.95 E-value=27 Score=32.74 Aligned_cols=111 Identities=18% Similarity=0.109 Sum_probs=79.5
Q ss_pred hhHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCCCC--HH-HHHHHHHHHHHhhcc
Q 017249 22 RKQALIEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPN--LD-AIESSLLALLNLAVR 98 (375)
Q Consensus 22 ~~~~~l~~Lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~~~--~~-~~~~a~~~L~~L~~~ 98 (375)
-+--.+..++..|+++++.....|+++|. . ...+..+...+.+..|++++-.++ .. +..+.=.++..|+.
T Consensus 113 Levysve~i~~aL~S~~~~l~~~~ckVI~----~--s~pk~lfa~t~iidiLL~lyFd~~t~i~~vvn~IE~~~~~Lss- 185 (500)
T 3vld_A 113 LEVYSAEDLVKALRSEIDPLKVAACRVIE----N--SQPKGLFATSNIIDILLDILFDEKVENDKLITAIEKALERLST- 185 (500)
T ss_dssp HHHSCHHHHHHHHTSSCHHHHHHHHHHHH----T--CSSGGGGTTSSHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHTT-
T ss_pred HHhCCHHHHHHHHhcCChHHHHHHHHHhc----c--cCchhHhccChHHHHHHHHHcCCCCCcHHHHHHHHHHHHHcCc-
Confidence 33445778899999999999999999998 3 367888899999999999986653 23 66666677777876
Q ss_pred ChhhHHHHHHcCChHHHHHhhcCCChHHHHHHHHHHHHhhcc
Q 017249 99 NERNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAA 140 (375)
Q Consensus 99 ~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~ 140 (375)
++-.|+.+.+ ...|.|..+=++.++-+...-+..+.-+...
T Consensus 186 deLirrril~-nnl~lL~~vK~~~~~i~~sRLLdll~il~~~ 226 (500)
T 3vld_A 186 DELIRRRLFD-NNLPYLVSVKGRMETVSFVRLIDFLTIEFQF 226 (500)
T ss_dssp SHHHHHHHHT-TTHHHHHHHHHHCCHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHH-HhHHHHHHHhcCCCceeHHHHHHHHHHHhcc
Confidence 4556777775 4567777776666666655555555555433
No 156
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}
Probab=61.99 E-value=21 Score=29.05 Aligned_cols=110 Identities=13% Similarity=0.146 Sum_probs=66.2
Q ss_pred ChHHHHHhhCC------CCHHHHHHHHHHHHHhhccChhhHHHHHHcCChHHHHHhhcCC---ChHHHHHHHHHHHHhhc
Q 017249 69 VVQPLVLMLVS------PNLDAIESSLLALLNLAVRNERNKVKIATAGAIPPLVELLKFQ---NGTLRELAAAAILTLSA 139 (375)
Q Consensus 69 ~v~~Lv~~L~~------~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~---~~~~~~~a~~~L~~Ls~ 139 (375)
.+|.++.+..+ .+.......++....|.. ++...-.-+-...+|.++.++=.. ...+|+.|+..|..++.
T Consensus 41 LlPyf~~fI~~~v~~nl~~l~~L~~lm~~~~ALl~-N~~l~lepYlH~LipsvLtCll~k~l~~~~LRd~AA~lL~~I~~ 119 (196)
T 4atg_A 41 LVPYFIQHISELILKSFKEAEVLKTCIALYFSLIK-NKHVFIDPYLHQILPSLLTCVIGKSIVDDDVRKMSADIVKYIYD 119 (196)
T ss_dssp THHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH-CTTCCCGGGHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHc-CCCCChHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHH
Confidence 46666666533 356666667777777766 443322222233466666655222 33799999999999986
Q ss_pred cCCChhHHHhcCChHHHHHHhccC--CHHHHHHHHHHHHHhc
Q 017249 140 AAPNKPAIAASGAAPLLVQILHSG--SVQGRVDAVTALHYLS 179 (375)
Q Consensus 140 ~~~~~~~i~~~~~l~~L~~lL~~~--~~~~~~~a~~~L~~L~ 179 (375)
.-..............+.+.+.++ +......|+..|..+.
T Consensus 120 ~~~~~y~~L~~RI~~tl~k~l~dp~~~l~t~YGAi~GL~~lG 161 (196)
T 4atg_A 120 TYSRSYKTLAPRVLKTLKGVWMDPNRSEDSQYGALYCLSILS 161 (196)
T ss_dssp HHTTTSTTHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC
T ss_pred HhCccCchHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHhH
Confidence 533211122344556677666655 4567888888888774
No 157
>3gae_A Protein DOA1; UFD3, CDC48, armadillo repeat, nucleus, phosphoprotein, UBL conjugation pathway, WD repeat, nuclear protein; 1.60A {Saccharomyces cerevisiae}
Probab=56.85 E-value=31 Score=29.35 Aligned_cols=132 Identities=8% Similarity=-0.028 Sum_probs=74.5
Q ss_pred HHHHHHHHHHhhccCCChhHHHhcCChHHH-HHHhccCCHHHHHHHHHHHHHhccCCC-CchhhhhcCCcHHHHHHhhhc
Q 017249 127 RELAAAAILTLSAAAPNKPAIAASGAAPLL-VQILHSGSVQGRVDAVTALHYLSTCKE-NSSPILDATAVPPLINLLKDC 204 (375)
Q Consensus 127 ~~~a~~~L~~Ls~~~~~~~~i~~~~~l~~L-~~lL~~~~~~~~~~a~~~L~~L~~~~~-~~~~i~~~g~i~~Lv~ll~~~ 204 (375)
+..++..++-+..+++... .+..+ -..+.+.++..+--++++++|+-.++. .+..+........++..+.+.
T Consensus 71 ~fP~lDllRl~~~~~~~~~------~l~~~l~~~~~~~~~~~~ml~lR~l~NlF~~~~~g~~l~~~~~~~~~i~~~i~~~ 144 (253)
T 3gae_A 71 KTPAYDIVRLIVKKLPYSS------DIKDYIEEGLGNKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTE 144 (253)
T ss_dssp CHHHHHHHHHHGGGCSCGG------GGHHHHHHHTTCSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHHSCSC
T ss_pred cchHHHHHHHHHcCCchHH------HHHHHHHHhcCCCchhHHHHHHHHHHHcccCCchHHHHHhcchhHHHHHHHHHHH
Confidence 3446666666666655322 22222 222334567788999999999988877 344443322233444433221
Q ss_pred ------ccchHHHHHHHHHHHHhhCChhhhHHHhhccCcHHHHHHHhcc---------CChHHHHHHHHHHHHhcccC
Q 017249 205 ------KKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVED---------GSLVSTQHAVGALLSLCQSC 267 (375)
Q Consensus 205 ------~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~---------~~~~~~~~a~~~L~~l~~~~ 267 (375)
..+..++-++..++.|++......+. .......++..+.. .+++....++-+|+++...+
T Consensus 145 ~~~~~~~~~~nl~iA~ATl~~N~av~~~~~~~---~~e~~~~l~~~i~~~~~~~e~~~~d~Ea~yR~LvAlGtL~~~~ 219 (253)
T 3gae_A 145 FSQASAKQSQNLAIAVSTLIFNYSALVTKGNS---DLELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVE 219 (253)
T ss_dssp CTTCCHHHHHHHHHHHHHHHHHHHHHHHTSCS---CTTHHHHHHHHHHTTTTTSHHHHHSHHHHHHHHHHHHHHHHHS
T ss_pred hhhcccCCchhHHHHHHHHHHHHHHHHhhccc---hHHHHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHHHHhCc
Confidence 12345667777888899864221110 12234455555542 26678888888999988654
No 158
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=56.03 E-value=2.1e+02 Score=30.35 Aligned_cols=268 Identities=15% Similarity=0.078 Sum_probs=143.7
Q ss_pred HHHHHHHHh--cCCCHHHHHHHHHHHHHHHhhC----ChhhHHHHHhcCChHHHHHhhCC---CCHHHHHHHHHHHHHhh
Q 017249 26 LIEELSDKL--INGDLETKIEAARDIRKVVKKS----SLKTRSEFAAAGVVQPLVLMLVS---PNLDAIESSLLALLNLA 96 (375)
Q Consensus 26 ~l~~Lv~~L--~s~~~~~~~~a~~~l~~l~~~~----~~~~~~~~~~~g~v~~Lv~~L~~---~~~~~~~~a~~~L~~L~ 96 (375)
....+...| .+.++.++..|+..|.+..... +++.+..+ +...+..+...-.. ....++...+.++..++
T Consensus 46 ~~~~~~~~L~~~s~~~~vR~~A~~~Lk~~I~~~W~~l~~e~k~~I-r~~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia 124 (1204)
T 3a6p_A 46 ICVPCGLRLAEKTQVAIVRHFGLQILEHVVKFRWNGMSRLEKVYL-KNSVMELIANGTLNILEEENHIKDALSRIVVEMI 124 (1204)
T ss_dssp THHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHSGGGSCHHHHHHH-HHHHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhcccCCHHHHHHH-HHHHHHHHHhhccccccccHHHHHHHHHHHHHHH
Confidence 445555544 3568899999999999987552 23444433 33334444433211 35788889999999888
Q ss_pred ccC-hhhHHHHHHcCChHHHHHhhcCCChHHHHHHHHHHHHhhcc---CCC----hh-----HHHhc--CChHHHHHHhc
Q 017249 97 VRN-ERNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAA---APN----KP-----AIAAS--GAAPLLVQILH 161 (375)
Q Consensus 97 ~~~-~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~---~~~----~~-----~i~~~--~~l~~L~~lL~ 161 (375)
..+ +..+ .+.++.|++++.+ ++...+.++.+|..|+.. .+. +. .+... ..++.+..++.
T Consensus 125 ~~d~p~~W-----p~ll~~L~~~~~~-~~~~~e~~L~iL~~L~Eev~~~~~~~~~r~~~l~~~l~~~~~~I~~~~~~iL~ 198 (1204)
T 3a6p_A 125 KREWPQHW-----PDMLIELDTLSKQ-GETQTELVMFILLRLAEDVVTFQTLPPQRRRDIQQTLTQNMERIFSFLLNTLQ 198 (1204)
T ss_dssp HHHSTTTC-----TTHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred HHhCcccc-----hHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 642 2222 4567788888866 556677888888888643 111 11 11111 22333344443
Q ss_pred c-------------------CCHHHHHHHHHHHHHhccCCCCchhhhhcC--CcHHHHHHhhhcccchHHHHHHHHHHHH
Q 017249 162 S-------------------GSVQGRVDAVTALHYLSTCKENSSPILDAT--AVPPLINLLKDCKKYSKFAEKATALLEI 220 (375)
Q Consensus 162 ~-------------------~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g--~i~~Lv~ll~~~~~~~~~~~~a~~~L~~ 220 (375)
. ++..+...++.++.+...-- ....+.+.. .++.+..++.. +.++..|+.+|..
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l~~~l~Wi-~~~~i~~~~~~ll~~l~~~l~~----~~lr~~A~ecL~~ 273 (1204)
T 3a6p_A 199 ENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAGYIDWV-SMSHITAENCKLLEILCLLLNE----QELQLGAAECLLI 273 (1204)
T ss_dssp HHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHHTTTTTS-CHHHHHTTTSHHHHHHHHGGGC----TTTHHHHHHHHHH
T ss_pred HHHHHHhcccccccchhhhhhhHHHHHHHHHHHHHHHhcc-CHHHHHhccchHHHHHHHHcCC----HHHHHHHHHHHHH
Confidence 2 12234555566655433211 111222322 55555555443 3567889999998
Q ss_pred hhCC---hhhhHHHhhcc--CcHHHHHHHhc--c------CChHHHHHHHHHHHHhcccCcHHHHHHHHH----------
Q 017249 221 LSSS---EEGRIAITNSD--GGILTLVETVE--D------GSLVSTQHAVGALLSLCQSCRDKYRQLILK---------- 277 (375)
Q Consensus 221 l~~~---~~~~~~~~~~~--g~v~~Lv~lL~--~------~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~---------- 277 (375)
+... +..+..++..- ..+..++..+. + .+....+..+..+..+.. .....+.+
T Consensus 274 i~s~~~~~~~~~~li~~l~~~~l~~l~~~~~~~~~~~~~e~d~e~~k~l~~ll~~lg~----~l~~l~~~~~~~~~~~~l 349 (1204)
T 3a6p_A 274 AVSRKGKLEDRKPLMVLFGDVAMHYILSAAQTADGGGLVEKHYVFLKRLCQVLCALGN----QLCALLGADSDVETPSNF 349 (1204)
T ss_dssp HHTCCSCHHHHGGGGGGGSHHHHHHHHHHHHTCCCCSCCHHHHHHHHHHHHHHHHHHH----HHHHHHHTCSSCCCCTTH
T ss_pred HHhCCCChhhHHHHHHHHhhHHHHHHHHHhhcCCCCCCccHHHHHHHHHHHHHHHHHH----HHHHHHhccccccChhHH
Confidence 8753 34444444211 12334555542 1 123455556666666542 11221111
Q ss_pred cCChHHHHHHhhhCCHHHHHHHHHHHHHhhcC
Q 017249 278 EGAIPGLLRLTVEGTFEAQERARTLLDLLRDT 309 (375)
Q Consensus 278 ~g~v~~L~~ll~~~~~~~~~~A~~~L~~l~~~ 309 (375)
.+.++.++.+..+.+..+-..+......+.++
T Consensus 350 ~~~l~~lL~~t~~~~~~vs~~~l~fW~~ll~~ 381 (1204)
T 3a6p_A 350 GKYLESFLAFTTHPSQFLRSSTQMTWGALFRH 381 (1204)
T ss_dssp HHHHHHHHHHHTSSCHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHhCccHHhHHHHHHHHHHHHhc
Confidence 13566666666677788888877766655544
No 159
>3vld_A DNA mismatch repair protein HSM3; heat repeat, RPT1, chaperone; HET: DNA; 2.05A {Saccharomyces cerevisiae} PDB: 3vle_A* 3vlf_A* 4a3v_A* 4a3t_A*
Probab=53.53 E-value=1.5e+02 Score=27.84 Aligned_cols=164 Identities=16% Similarity=0.105 Sum_probs=100.5
Q ss_pred HHHHHHHHHHHHHhhccCh-hhHHHHHHcCChHHHHHhh-cC-C----ChHHHHHHHHHHHHhhccCCChhHHHhcCChH
Q 017249 82 LDAIESSLLALLNLAVRNE-RNKVKIATAGAIPPLVELL-KF-Q----NGTLRELAAAAILTLSAAAPNKPAIAASGAAP 154 (375)
Q Consensus 82 ~~~~~~a~~~L~~L~~~~~-~~r~~i~~~g~i~~Lv~lL-~~-~----~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~l~ 154 (375)
.+..+.+.-.|...+.-.. ..+. + ++.+-++| .+ . +++....-+..+...+ + -..+.+.=.++
T Consensus 50 n~Lie~~~LnL~~~t~~~~~~~~~-l-----l~~Ik~iL~~~~~~~~lD~~~Li~Ll~~il~~~---~-Fd~VLevysve 119 (500)
T 3vld_A 50 NTLLRKCSLNLVTVVSLPDMDVKP-L-----LATIKRFLTSNVSYDSLNYDYLLDVVDKLVPMA---D-FDDVLEVYSAE 119 (500)
T ss_dssp HHHHHHHHHHHHHSCSCCSCCCHH-H-----HHHHHHHHHCSSCCTTCCHHHHHHHHHHHHHHS---C-HHHHHHHSCHH
T ss_pred HHHHHHHhhcchhcccCCcccHHH-H-----HHHHHHHHcCCccccccCHHHHHHHHHHHHhcC---C-HHHHHHhCCHH
Confidence 3556666666777665322 2232 2 33555666 33 1 4444333333333332 2 23334455688
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHhccCCCCchhhhhcCCcHHHHHHhhhcccchH-HHHHHHHHHHHhhCChhhhHHHhh
Q 017249 155 LLVQILHSGSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDCKKYSK-FAEKATALLEILSSSEEGRIAITN 233 (375)
Q Consensus 155 ~L~~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~-~~~~a~~~L~~l~~~~~~~~~~~~ 233 (375)
.++..|.+++..+...||..+. .+..+..+...+.+..+++++-+.+..-. +.-..-.++..|+.++-.|+.+.
T Consensus 120 ~i~~aL~S~~~~l~~~~ckVI~----~s~pk~lfa~t~iidiLL~lyFd~~t~i~~vvn~IE~~~~~LssdeLirrril- 194 (500)
T 3vld_A 120 DLVKALRSEIDPLKVAACRVIE----NSQPKGLFATSNIIDILLDILFDEKVENDKLITAIEKALERLSTDELIRRRLF- 194 (500)
T ss_dssp HHHHHHTSSCHHHHHHHHHHHH----TCSSGGGGTTSSHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHTTSHHHHHHHH-
T ss_pred HHHHHHhcCChHHHHHHHHHhc----ccCchhHhccChHHHHHHHHHcCCCCCcHHHHHHHHHHHHHcCchHHHHHHHH-
Confidence 8999999999999999998887 44567777788999999999887644434 66667788888888887777777
Q ss_pred ccCcHHHHHHHhccCChHHHHHHHHHHH
Q 017249 234 SDGGILTLVETVEDGSLVSTQHAVGALL 261 (375)
Q Consensus 234 ~~g~v~~Lv~lL~~~~~~~~~~a~~~L~ 261 (375)
+ ...+.|...=+..++.....-+..+.
T Consensus 195 ~-nnl~lL~~vK~~~~~i~~sRLLdll~ 221 (500)
T 3vld_A 195 D-NNLPYLVSVKGRMETVSFVRLIDFLT 221 (500)
T ss_dssp T-TTHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred H-HhHHHHHHHhcCCCceeHHHHHHHHH
Confidence 2 34444444333344444444444443
No 160
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}
Probab=52.08 E-value=74 Score=25.80 Aligned_cols=130 Identities=11% Similarity=0.011 Sum_probs=75.5
Q ss_pred CChHHHHHHhcc------CCHHHHHHHHHHHHHhccCCCCchhhhhcCCcHHHHHHhhhcccch-HHHHHHHHHHHHhhC
Q 017249 151 GAAPLLVQILHS------GSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDCKKYS-KFAEKATALLEILSS 223 (375)
Q Consensus 151 ~~l~~L~~lL~~------~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~-~~~~~a~~~L~~l~~ 223 (375)
..+|.++..+.. .+.......+.....|..++...-...-...+|.++..+-...-.. .+++.|..++..++.
T Consensus 40 ~LlPyf~~fI~~~v~~nl~~l~~L~~lm~~~~ALl~N~~l~lepYlH~LipsvLtCll~k~l~~~~LRd~AA~lL~~I~~ 119 (196)
T 4atg_A 40 QLVPYFIQHISELILKSFKEAEVLKTCIALYFSLIKNKHVFIDPYLHQILPSLLTCVIGKSIVDDDVRKMSADIVKYIYD 119 (196)
T ss_dssp TTHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHCTTCCCGGGHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHH
Confidence 345666655432 2566677778888888877654433333457777777765433222 689999999999986
Q ss_pred ChhhhHHHhhccCcHHHHHHHhccC--ChHHHHHHHHHHHHhcccCcHHHHHHHHHcCChHHHHHHhh
Q 017249 224 SEEGRIAITNSDGGILTLVETVEDG--SLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTV 289 (375)
Q Consensus 224 ~~~~~~~~~~~~g~v~~Lv~lL~~~--~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~g~v~~L~~ll~ 289 (375)
.-.....-+ .......+...+.++ +....--|+..|..+.. + .++.-++|.|-.+.+
T Consensus 120 ~~~~~y~~L-~~RI~~tl~k~l~dp~~~l~t~YGAi~GL~~lG~----~----~vr~~llP~l~~~~~ 178 (196)
T 4atg_A 120 TYSRSYKTL-APRVLKTLKGVWMDPNRSEDSQYGALYCLSILSK----N----VVNTVIREHAEEYKR 178 (196)
T ss_dssp HHTTTSTTH-HHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCH----H----HHHTHHHHHHHHHHH
T ss_pred HhCccCchH-HHHHHHHHHHHHcCCCCChHHHHHHHHHHHHhHH----H----HHHHhhhcCHHHHHH
Confidence 432221111 123455566565543 35555666666666632 2 244445677766554
No 161
>3gae_A Protein DOA1; UFD3, CDC48, armadillo repeat, nucleus, phosphoprotein, UBL conjugation pathway, WD repeat, nuclear protein; 1.60A {Saccharomyces cerevisiae}
Probab=51.50 E-value=26 Score=29.78 Aligned_cols=102 Identities=15% Similarity=0.146 Sum_probs=64.2
Q ss_pred CCCCHHHHHHHHHHHHHhhccChh-hHHHHHHcCChHHHHHhhcC--------CChHHHHHHHHHHHHhhccCC-ChhHH
Q 017249 78 VSPNLDAIESSLLALLNLAVRNER-NKVKIATAGAIPPLVELLKF--------QNGTLRELAAAAILTLSAAAP-NKPAI 147 (375)
Q Consensus 78 ~~~~~~~~~~a~~~L~~L~~~~~~-~r~~i~~~g~i~~Lv~lL~~--------~~~~~~~~a~~~L~~Ls~~~~-~~~~i 147 (375)
.+..+..+..+++++.|+.. ++. .+..+........+++.+.+ .+..++..++..+.|++..-. .+.
T Consensus 100 ~~~~~~~~ml~lR~l~NlF~-~~~~g~~l~~~~~~~~~i~~~i~~~~~~~~~~~~~nl~iA~ATl~~N~av~~~~~~~-- 176 (253)
T 3gae_A 100 GNKNITLTMLTVRILVNCFN-NENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNS-- 176 (253)
T ss_dssp TCSSHHHHHHHHHHHHHHTT-CTTTHHHHHTSHHHHTTHHHHSCSCCTTCCHHHHHHHHHHHHHHHHHHHHHHHTSCS--
T ss_pred CCCchhHHHHHHHHHHHccc-CCchHHHHHhcchhHHHHHHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHHhhccc--
Confidence 34567889999999999998 455 46555443334444444321 256788888899999875411 110
Q ss_pred HhcCChHHHHHHhcc---------CCHHHHHHHHHHHHHhccCCC
Q 017249 148 AASGAAPLLVQILHS---------GSVQGRVDAVTALHYLSTCKE 183 (375)
Q Consensus 148 ~~~~~l~~L~~lL~~---------~~~~~~~~a~~~L~~L~~~~~ 183 (375)
.......+++++.. .+.+....++-+|.+|...++
T Consensus 177 -~~e~~~~l~~~i~~~~~~~e~~~~d~Ea~yR~LvAlGtL~~~~~ 220 (253)
T 3gae_A 177 -DLELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVEP 220 (253)
T ss_dssp -CTTHHHHHHHHHHTTTTTSHHHHHSHHHHHHHHHHHHHHHHHSG
T ss_pred -hHHHHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHHHHhCcH
Confidence 12233445555542 367888888999999886443
No 162
>3pst_A Protein DOA1; protein degradation, CDC48, ubiquitin, nuclear protein; 2.00A {Saccharomyces cerevisiae} PDB: 3psp_A
Probab=51.30 E-value=1.5e+02 Score=27.26 Aligned_cols=161 Identities=9% Similarity=0.019 Sum_probs=89.5
Q ss_pred HHHHHHHHHHhhccCCChhHHHhcCChHHHH-HHhccCCHHHHHHHHHHHHHhccCCCCchhhhhc-CCcHHHHHHhhhc
Q 017249 127 RELAAAAILTLSAAAPNKPAIAASGAAPLLV-QILHSGSVQGRVDAVTALHYLSTCKENSSPILDA-TAVPPLINLLKDC 204 (375)
Q Consensus 127 ~~~a~~~L~~Ls~~~~~~~~i~~~~~l~~L~-~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~-g~i~~Lv~ll~~~ 204 (375)
+..++.+|+-+..+++... .+..++ ..+.+..+..+--++++++||-..+.....++.. .....+++.+...
T Consensus 243 ~FPaLDLLRl~v~~p~~~~------~l~~li~~~l~~~~~an~MltlR~laNlF~~~~~g~~ll~~~~~~~~i~~~i~~~ 316 (425)
T 3pst_A 243 KTPAYDIVRLIVKKLPYSS------DIKDYIEEGLGNKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTE 316 (425)
T ss_dssp CHHHHHHHHHHGGGCSCGG------GGHHHHHHHTTCSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHHHHHHHSCCC
T ss_pred ccHHHHHHHHHHcCCchHH------HHHHHHHHhcCCCChhHHHHHHHHHHHhcCCcchHHHHhhCchhHHHHHHHHHHH
Confidence 4456677777666655322 222232 3344456778889999999998887654444432 2344555554321
Q ss_pred ------ccchHHHHHHHHHHHHhhCChhhhHHHhhccCcHHHHHHHhc---------cCChHHHHHHHHHHHHhcccCcH
Q 017249 205 ------KKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVE---------DGSLVSTQHAVGALLSLCQSCRD 269 (375)
Q Consensus 205 ------~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~Lv~lL~---------~~~~~~~~~a~~~L~~l~~~~~~ 269 (375)
..+..++-++..++.|++......+. +......++..+. ..+++....++-+|++|...+ +
T Consensus 317 l~~~~~~~nkNl~IA~ATLllNlAv~~~~~~~---~~el~~~l~e~l~~~~g~~E~~~~d~EA~yRlLVALGtLv~~~-~ 392 (425)
T 3pst_A 317 FSQASAKQSQNLAIAVSTLIFNYSALVTKGNS---DLELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVE-P 392 (425)
T ss_dssp CTTCCHHHHHHHHHHHHHHHHHHHHHHHHSCS---CTTHHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHHHC-H
T ss_pred hhhcccCCCchHHHHHHHHHHHHHHHHhcccc---hHHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHhcC-H
Confidence 11345667777888899864221110 1234445666655 247788889999999998755 3
Q ss_pred HHHHHHHHcCChHHHHHHhh--hCCHHHHHHHH
Q 017249 270 KYRQLILKEGAIPGLLRLTV--EGTFEAQERAR 300 (375)
Q Consensus 270 ~~~~~l~~~g~v~~L~~ll~--~~~~~~~~~A~ 300 (375)
..+.. .. .+..+-.... ...++++.-+.
T Consensus 393 ~~~~~-a~--~~~~~~~~~~~~~~e~R~~~v~~ 422 (425)
T 3pst_A 393 TLRQF-AN--SVTWLANIKRSYGNVPRFKDIFD 422 (425)
T ss_dssp HHHHH-HT--TCHHHHHHHHHHTTSHHHHHHHH
T ss_pred HHHHH-hc--CHHHHHHHHHhcccchHHHHHHH
Confidence 33322 22 2344443332 23566655443
No 163
>3rru_A TOM1L1 protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, super-helical protein; 3.00A {Homo sapiens}
Probab=49.55 E-value=35 Score=26.42 Aligned_cols=75 Identities=15% Similarity=0.214 Sum_probs=54.4
Q ss_pred CcHHHHHHHhcc-CChHHHHHHHHHHHHhcccCcHHHHHHHHHcCChH-HHHHHhhh---CCHHHHHHHHHHHHHhhcCC
Q 017249 236 GGILTLVETVED-GSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIP-GLLRLTVE---GTFEAQERARTLLDLLRDTP 310 (375)
Q Consensus 236 g~v~~Lv~lL~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~g~v~-~L~~ll~~---~~~~~~~~A~~~L~~l~~~~ 310 (375)
.++..|..-|.. .++..+..|+.+|-.+..+++......+.+..++. .|+.++.. .+..|++....++..-+..-
T Consensus 53 eA~ral~KRl~~~~n~~~~l~AL~LLe~cvkNCG~~fh~eiask~Fl~e~L~kl~~~~~~~~~~Vk~kil~li~~Wa~~F 132 (152)
T 3rru_A 53 DAVKALKKRISKNYNHKEIQLTLSLIDMCVQNCGPSFQSLIVKKEFVKENLVKLLNPRYNLPLDIQNRILNFIKTWSQGF 132 (152)
T ss_dssp HHHHHHHHHHTTCCBHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHTTTTGGGGSGGGCCCHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHhhHhHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHh
Confidence 355566666764 46777888999999998888766666666666775 37776653 24579999999998887654
No 164
>2xpp_A IWS1, ECU08_0440; transcription, elongation, histone chaperone, RNA polymerase mRNA export; 1.74A {Encephalitozoon cuniculi} PDB: 2xpo_A 2xpn_A 2xpl_A
Probab=46.00 E-value=98 Score=23.69 Aligned_cols=89 Identities=16% Similarity=0.194 Sum_probs=62.4
Q ss_pred HHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCC------CCHHHHHHHHHHHHHhhccChhhHHHHHHcCChHHHHH
Q 017249 44 EAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVS------PNLDAIESSLLALLNLAVRNERNKVKIATAGAIPPLVE 117 (375)
Q Consensus 44 ~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~------~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~ 117 (375)
.-+..+....... ..+..+++.|++..+-..|+. ++..++...+.+|.++-- .+..+.++|.=..++.
T Consensus 39 klL~~V~~~l~k~--~l~~~~ld~giL~~l~~WL~PLpDgsLP~~~Ir~~lL~~L~~lPI----~~e~Lk~SglGkvv~~ 112 (145)
T 2xpp_A 39 ENVEEISDILMSK--ALQESLLDEGILDEIKGWLEPLPDKSMPNIKIRKRLLDVLKTMKI----HKEHLVTSGVGKIVYF 112 (145)
T ss_dssp HHHHHHHHHHTCT--TTHHHHHHTTHHHHHHHHHSCCTTSCCCCHHHHHHHHHHHHTSCC----CHHHHHHHCHHHHHHH
T ss_pred hhHHHHHHHHhhH--HHHHHHHHcCHHHHHHHHhCcCCCCCCCCHHHHHHHHHHHHHCCC----CHHHhhcCCCCcchhh
Confidence 3334444455555 678889999999999888863 367899999999999853 4677777765555555
Q ss_pred hhcCC--ChHHHHHHHHHHHHhh
Q 017249 118 LLKFQ--NGTLRELAAAAILTLS 138 (375)
Q Consensus 118 lL~~~--~~~~~~~a~~~L~~Ls 138 (375)
+-+++ .++.+..|-..+...+
T Consensus 113 l~k~~~et~~nk~la~~Li~~Ws 135 (145)
T 2xpp_A 113 YSINPKESKEVRASAKALVQKWT 135 (145)
T ss_dssp HHHCTTSCHHHHHHHHHHHHHHH
T ss_pred hhcCCccCHHHHHHHHHHHHHHH
Confidence 55554 5677777777665543
No 165
>3l3f_X Protein DOA1, DOA1/UFD3; armadillo-like repeat structure, nucleus, UBL conjugation PA protein binding; 1.90A {Saccharomyces cerevisiae}
Probab=44.98 E-value=1.3e+02 Score=26.89 Aligned_cols=132 Identities=9% Similarity=0.009 Sum_probs=76.2
Q ss_pred HHHHHHHHHHhhccCCChhHHHhcCChHHHH-HHhccCCHHHHHHHHHHHHHhccCCCCchhhhhcC-CcHHHHHHhhhc
Q 017249 127 RELAAAAILTLSAAAPNKPAIAASGAAPLLV-QILHSGSVQGRVDAVTALHYLSTCKENSSPILDAT-AVPPLINLLKDC 204 (375)
Q Consensus 127 ~~~a~~~L~~Ls~~~~~~~~i~~~~~l~~L~-~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g-~i~~Lv~ll~~~ 204 (375)
+..++..|+-+..+++... .+..++ ..+.+..+..+--++++++||-..+.....++... ....+++.+.+.
T Consensus 180 ~FP~LDLLRl~v~~~~~~~------~l~~li~~~~~~~~~~n~MltlR~laNlF~~~~~g~~ll~~~~~~~~i~~~i~~~ 253 (362)
T 3l3f_X 180 KTPAYDIVRLIVKKLPYSS------DIKDYIEEGLGNKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTE 253 (362)
T ss_dssp CHHHHHHHHHHGGGCSCGG------GGHHHHHHHTTCSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHHSCSC
T ss_pred cchHHHHHHHHhcCCChHH------HHHHHHHHhcCCCChhHHHHHHHHHHHhccCcchHHHHHhcchhHHHHHHHHHHH
Confidence 4456666666666555322 222233 33344567788899999999988876444444321 223344433211
Q ss_pred ------ccchHHHHHHHHHHHHhhCChhhhHHHhhccCcHHHHHHHhc---------cCChHHHHHHHHHHHHhcccC
Q 017249 205 ------KKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVE---------DGSLVSTQHAVGALLSLCQSC 267 (375)
Q Consensus 205 ------~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~Lv~lL~---------~~~~~~~~~a~~~L~~l~~~~ 267 (375)
..+..++-++..++.|++......+. .......++..+. ..+++....++-+|++|...+
T Consensus 254 ~~~~~~~~nkNl~IA~ATL~lNlAv~~~~~~~---~~el~~~l~~~l~~~~g~~E~~~~d~EA~yRlLVALGtL~~~~ 328 (362)
T 3l3f_X 254 FSQASAKQSQNLAIAVSTLIFNYSALVTKGNS---DLELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVE 328 (362)
T ss_dssp CSSCCHHHHHHHHHHHHHHHHHHHHHHHHTCS---CTTHHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHHHC
T ss_pred hhhcccCCCchHHHHHHHHHHHHHHHHhcccc---hHHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHhcC
Confidence 11345667777888899864221110 1234455666665 247788899999999998755
No 166
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=40.64 E-value=65 Score=33.42 Aligned_cols=103 Identities=10% Similarity=0.011 Sum_probs=56.5
Q ss_pred hHHHHHhhCCCCHHHHHHHHHHHHHhhccChhhHHHHHHcCChHHHHHhhcC----CChHHHHHHHHHHHH--hhccCCC
Q 017249 70 VQPLVLMLVSPNLDAIESSLLALLNLAVRNERNKVKIATAGAIPPLVELLKF----QNGTLRELAAAAILT--LSAAAPN 143 (375)
Q Consensus 70 v~~Lv~~L~~~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~----~~~~~~~~a~~~L~~--Ls~~~~~ 143 (375)
+..|+++--+.-++++..|-.+|....+.-+..+..+ +|.+++.|+. .+.+-.+.|+.+|.. +...-.
T Consensus 135 l~dL~~Ls~S~Y~~VR~~AQ~~L~~~~~~~~gs~~~i-----ip~ll~~L~~~~~~~~~~~iKGaLy~L~~k~~~~~~~- 208 (997)
T 1vsy_5 135 LVDIIQLATSLYPDIYKPAQGTLVHCMKQLVGSYGVV-----INKIIPSLEKAIKDHDYMKIQVILNVLLIKKIHRKLM- 208 (997)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHHHHHHHTTBTTHHHHH-----HHHHHHHHHHHHHTCSCHHHHHHHHHTTSHHHHHHGG-
T ss_pred HHHHHHHhcCchHHHHHHHHHHHHHHHHhcccHHHHH-----HHHHHHHHhccccCCCHHHHHHHHHHHhhhhhhhHHh-
Confidence 4445555556677888888888888777555555554 5577776644 355555667665541 110000
Q ss_pred hhHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHh
Q 017249 144 KPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYL 178 (375)
Q Consensus 144 ~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~~L 178 (375)
...-.-...++.|++......+.++..+-.+...+
T Consensus 209 ~d~~~~~~~~~ali~~~~~dKpsI~~l~~~l~~~i 243 (997)
T 1vsy_5 209 TDYKDIGRLIFLLIECCRVNELEIGMYADKILTDI 243 (997)
T ss_dssp GCHHHHHHHHHHHHHTCSCSSSSTTTHHHHHHHHH
T ss_pred cChHHHHHHHHHHHHhCcCCCHHHHHHHHHHHHHH
Confidence 01111234456666665555565555444443333
No 167
>3pst_A Protein DOA1; protein degradation, CDC48, ubiquitin, nuclear protein; 2.00A {Saccharomyces cerevisiae} PDB: 3psp_A
Probab=36.75 E-value=2e+02 Score=26.45 Aligned_cols=100 Identities=12% Similarity=0.014 Sum_probs=62.7
Q ss_pred chHHHHHHHHHHHHhhCChhhhHHHhhccCcHHHHHHHhcc--------CChHHHHHHHHHHHHhcccCcHHHHHHHHHc
Q 017249 207 YSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVED--------GSLVSTQHAVGALLSLCQSCRDKYRQLILKE 278 (375)
Q Consensus 207 ~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~--------~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~ 278 (375)
....+..++++++|+-.++.....++........+++.+.. .+..++-.+...+.|++.... ..+ .+.
T Consensus 275 ~~an~MltlR~laNlF~~~~~g~~ll~~~~~~~~i~~~i~~~l~~~~~~~nkNl~IA~ATLllNlAv~~~-~~~---~~~ 350 (425)
T 3pst_A 275 NITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVT-KGN---SDL 350 (425)
T ss_dssp SHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHHHHHHHSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHH-HSC---SCT
T ss_pred ChhHHHHHHHHHHHhcCCcchHHHHhhCchhHHHHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHHh-ccc---chH
Confidence 44667789999999999988555555333335566666531 234577777788888876421 000 012
Q ss_pred CChHHHHHHhh---------hCCHHHHHHHHHHHHHhhcCC
Q 017249 279 GAIPGLLRLTV---------EGTFEAQERARTLLDLLRDTP 310 (375)
Q Consensus 279 g~v~~L~~ll~---------~~~~~~~~~A~~~L~~l~~~~ 310 (375)
..+..+.+++. ..++++...+..+|.+|....
T Consensus 351 el~~~l~e~l~~~~g~~E~~~~d~EA~yRlLVALGtLv~~~ 391 (425)
T 3pst_A 351 ELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVE 391 (425)
T ss_dssp THHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHhcC
Confidence 23345555554 347888888888888887533
No 168
>3l3f_X Protein DOA1, DOA1/UFD3; armadillo-like repeat structure, nucleus, UBL conjugation PA protein binding; 1.90A {Saccharomyces cerevisiae}
Probab=35.04 E-value=1e+02 Score=27.60 Aligned_cols=100 Identities=12% Similarity=0.014 Sum_probs=61.9
Q ss_pred chHHHHHHHHHHHHhhCChhhhHHHhhccCcHHHHHHHhcc--------CChHHHHHHHHHHHHhcccCcHHHHHHHHHc
Q 017249 207 YSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVED--------GSLVSTQHAVGALLSLCQSCRDKYRQLILKE 278 (375)
Q Consensus 207 ~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~--------~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~ 278 (375)
....+..++++++|+-.++.....++.+......+++.+.. .+..++-.+...+.|++.... ..+ .+.
T Consensus 212 ~~~n~MltlR~laNlF~~~~~g~~ll~~~~~~~~i~~~i~~~~~~~~~~~nkNl~IA~ATL~lNlAv~~~-~~~---~~~ 287 (362)
T 3l3f_X 212 NITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVT-KGN---SDL 287 (362)
T ss_dssp SHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHHSCSCCSSCCHHHHHHHHHHHHHHHHHHHHHHH-HTC---SCT
T ss_pred ChhHHHHHHHHHHHhccCcchHHHHHhcchhHHHHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHHh-ccc---chH
Confidence 44567789999999999988545455332223455555421 235677777788888876421 000 012
Q ss_pred CChHHHHHHhh---------hCCHHHHHHHHHHHHHhhcCC
Q 017249 279 GAIPGLLRLTV---------EGTFEAQERARTLLDLLRDTP 310 (375)
Q Consensus 279 g~v~~L~~ll~---------~~~~~~~~~A~~~L~~l~~~~ 310 (375)
..+..+.+++. ..++++...+..+|.+|....
T Consensus 288 el~~~l~~~l~~~~g~~E~~~~d~EA~yRlLVALGtL~~~~ 328 (362)
T 3l3f_X 288 ELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVE 328 (362)
T ss_dssp THHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHhcC
Confidence 23445566555 358888899999999888543
No 169
>3rru_A TOM1L1 protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, super-helical protein; 3.00A {Homo sapiens}
Probab=33.20 E-value=76 Score=24.51 Aligned_cols=76 Identities=14% Similarity=0.079 Sum_probs=51.7
Q ss_pred hHhHHHHHHHHhcC-CCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHH-HHHhhCC---CCHHHHHHHHHHHHHhhc
Q 017249 23 KQALIEELSDKLIN-GDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQP-LVLMLVS---PNLDAIESSLLALLNLAV 97 (375)
Q Consensus 23 ~~~~l~~Lv~~L~s-~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~-Lv~~L~~---~~~~~~~~a~~~L~~L~~ 97 (375)
..+++..|.+.|.. .++.++..|+..|-.+..+.-+.....+.+..++.. |+.+++. ....|+...+..+...+.
T Consensus 51 pkeA~ral~KRl~~~~n~~~~l~AL~LLe~cvkNCG~~fh~eiask~Fl~e~L~kl~~~~~~~~~~Vk~kil~li~~Wa~ 130 (152)
T 3rru_A 51 PKDAVKALKKRISKNYNHKEIQLTLSLIDMCVQNCGPSFQSLIVKKEFVKENLVKLLNPRYNLPLDIQNRILNFIKTWSQ 130 (152)
T ss_dssp HHHHHHHHHHHHTTCCBHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHTTTTGGGGSGGGCCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHhhHhHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHH
Confidence 45567777777874 578888888888888877663334444444455553 6666653 245789999998888875
Q ss_pred c
Q 017249 98 R 98 (375)
Q Consensus 98 ~ 98 (375)
.
T Consensus 131 ~ 131 (152)
T 3rru_A 131 G 131 (152)
T ss_dssp C
T ss_pred H
Confidence 3
No 170
>2xpp_A IWS1, ECU08_0440; transcription, elongation, histone chaperone, RNA polymerase mRNA export; 1.74A {Encephalitozoon cuniculi} PDB: 2xpo_A 2xpn_A 2xpl_A
Probab=29.76 E-value=1.9e+02 Score=22.11 Aligned_cols=79 Identities=19% Similarity=0.280 Sum_probs=57.6
Q ss_pred HHHHHHHHcCChHHHHHHhh---h---CCHHHHHHHHHHHHHhhcCChhhhhhhhhHHHHHHHHhhcCCChHHHHHHHHH
Q 017249 270 KYRQLILKEGAIPGLLRLTV---E---GTFEAQERARTLLDLLRDTPQEKRLSSSVLEKIVYDIAARVDGADKAAETAKR 343 (375)
Q Consensus 270 ~~~~~l~~~g~v~~L~~ll~---~---~~~~~~~~A~~~L~~l~~~~~~~~~~~g~~~~l~~~l~~~~~g~~~~~~~a~~ 343 (375)
..+..+++.|++..+-.-+. + ++..+|+....+|..+- -..+.+.+.|+-. .+-.+..+.+-++.-++.|.+
T Consensus 52 ~l~~~~ld~giL~~l~~WL~PLpDgsLP~~~Ir~~lL~~L~~lP-I~~e~Lk~SglGk-vv~~l~k~~~et~~nk~la~~ 129 (145)
T 2xpp_A 52 ALQESLLDEGILDEIKGWLEPLPDKSMPNIKIRKRLLDVLKTMK-IHKEHLVTSGVGK-IVYFYSINPKESKEVRASAKA 129 (145)
T ss_dssp TTHHHHHHTTHHHHHHHHHSCCTTSCCCCHHHHHHHHHHHHTSC-CCHHHHHHHCHHH-HHHHHHHCTTSCHHHHHHHHH
T ss_pred HHHHHHHHcCHHHHHHHHhCcCCCCCCCCHHHHHHHHHHHHHCC-CCHHHhhcCCCCc-chhhhhcCCccCHHHHHHHHH
Confidence 45778899999988887665 3 34788998888888885 2233444455444 555677778888999999999
Q ss_pred HHHHHHH
Q 017249 344 LLQDMVQ 350 (375)
Q Consensus 344 ~l~~l~~ 350 (375)
++....+
T Consensus 130 Li~~WsR 136 (145)
T 2xpp_A 130 LVQKWTN 136 (145)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9887654
No 171
>3nfq_A Transcription factor IWS1; SPN1, RNA polymerase II; 1.85A {Saccharomyces cerevisiae} PDB: 3o8z_A 3oak_A
Probab=28.28 E-value=2.2e+02 Score=22.41 Aligned_cols=90 Identities=18% Similarity=0.226 Sum_probs=63.0
Q ss_pred HHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCC------CCHHHHHHHHHHHHHhhccChhhHHHHHHcCChHHHHH
Q 017249 44 EAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVS------PNLDAIESSLLALLNLAVRNERNKVKIATAGAIPPLVE 117 (375)
Q Consensus 44 ~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~------~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~ 117 (375)
.-+..+....... ..+..+++.|++..+-..|.. +...++...+.+|.++-- .+..+.++|.=..++-
T Consensus 54 kmL~~V~~~L~k~--~L~~~~ld~giL~~l~~WLePLpDgSLP~~~Ir~~lL~~L~~lPI----~~e~Lk~SglGkvV~~ 127 (170)
T 3nfq_A 54 KLLPKVVSVLSKA--NLADTILDNNLLQSVRIWLEPLPDGSLPSFEIQKSLFAALNDLPV----KTEHLKESGLGRVVIF 127 (170)
T ss_dssp HHHHHHHHHHTCG--GGHHHHHHTTHHHHHHHHHSCCTTSCCCCHHHHHHHHHHHHTSCC----CHHHHHHHSHHHHHHH
T ss_pred hhHHHHHHHHhHH--HHHHHHHHcchHHHHHHHhCcCCCCCCCcHHHHHHHHHHHHHCCC----CHHHHhhCCCCceeee
Confidence 3334444445554 678889999999999888854 357899999999998853 4567777765555555
Q ss_pred hhcCC--ChHHHHHHHHHHHHhhc
Q 017249 118 LLKFQ--NGTLRELAAAAILTLSA 139 (375)
Q Consensus 118 lL~~~--~~~~~~~a~~~L~~Ls~ 139 (375)
+-+++ .++.+..|-..+...+.
T Consensus 128 l~k~~~et~~nkrla~~Li~~WsR 151 (170)
T 3nfq_A 128 YTKSKRVEAQLARLAEKLIAEWTR 151 (170)
T ss_dssp HHHCTTSCHHHHHHHHHHHHHHTC
T ss_pred hhcCCcccHHHHHHHHHHHHHHHH
Confidence 54454 57778888888877653
No 172
>3cqx_C BAG family molecular chaperone regulator 2; protein-protein complex, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; 2.30A {Mus musculus} PDB: 3d0t_A
Probab=20.82 E-value=2e+02 Score=19.81 Aligned_cols=68 Identities=10% Similarity=0.136 Sum_probs=39.2
Q ss_pred cCChHHHHHHhhhCCHHHHHHHHHHHHHhhcCChhhhhhhhhHHHHHHHHhhcCCChHHHHHHHHHHHHHH
Q 017249 278 EGAIPGLLRLTVEGTFEAQERARTLLDLLRDTPQEKRLSSSVLEKIVYDIAARVDGADKAAETAKRLLQDM 348 (375)
Q Consensus 278 ~g~v~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~~~~~~~g~~~~l~~~l~~~~~g~~~~~~~a~~~l~~l 348 (375)
...|..++.-+.++....+......+..|+...+.--+...+-..+ |....+...+.+.+-..+|..+
T Consensus 13 n~lID~~v~k~~~D~~~ar~~c~~ylnACss~~~~gp~DqkFqs~v---i~CtlDDQKkIkkRLe~Ll~~i 80 (88)
T 3cqx_C 13 TRIIDEVVSKFLDDLGNAKSHLMSLYSACSSEVPPGPVDQKFQSIV---IGCALEDQKKIKRRLETLLRNI 80 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCCSSCCCHHHHHHH---HTSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCHHHHHHHHHHHHHhcCCCCCCCchhHHHHHHH---hcccHhhHHHHHHHHHHHHHHH
Confidence 4566777776666666788888888888887764322222232222 3333344455555555565555
No 173
>2b6c_A Hypothetical protein EF3068; structural genomis, DNA repair enzyme, structural genomics, protein structure initiative; HET: SO4; 2.10A {Enterococcus faecalis} SCOP: a.118.1.17
Probab=20.50 E-value=3.4e+02 Score=21.95 Aligned_cols=74 Identities=5% Similarity=-0.087 Sum_probs=47.6
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhccChhhHHHH
Q 017249 27 IEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIESSLLALLNLAVRNERNKVKI 106 (375)
Q Consensus 27 l~~Lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~~~~~~~~~a~~~L~~L~~~~~~~r~~i 106 (375)
.+.+.....|++.-++..|+..+....... ....+ ++.+-..+.+++.-++....|.|+.++..+++.-..+
T Consensus 126 ~~~i~~W~~s~~~w~rR~ai~~~l~~~~~~---~~~~~-----~~i~~~~~~d~~~yV~kavgW~Lr~~~k~~~~~v~~f 197 (220)
T 2b6c_A 126 PTIFALFYGAENFWNRRVALNLQLMLKEKT---NQDLL-----KKAIIYDRTTEEFFIQKAIGWSLRQYSKTNPQWVEEL 197 (220)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHTTTTCGGGC---CHHHH-----HHHHHHTTTCCCHHHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHCC---CHHHH-----HHHHHHhCCChHHHHHHHHHHHHHHHHhhCHHHHHHH
Confidence 345666777888888877777553332222 11111 3333336677888899999999999999887755555
Q ss_pred HH
Q 017249 107 AT 108 (375)
Q Consensus 107 ~~ 108 (375)
+.
T Consensus 198 l~ 199 (220)
T 2b6c_A 198 MK 199 (220)
T ss_dssp HH
T ss_pred Hh
Confidence 54
Done!