RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 017250
(375 letters)
>gnl|CDD|153253 cd07991, LPLAT_LPCAT1-like, Lysophospholipid Acyltransferases
(LPLATs) of Glycerophospholipid Biosynthesis:
LPCAT1-like. Lysophospholipid acyltransferase (LPLAT)
superfamily member: acyltransferases of de novo and
remodeling pathways of glycerophospholipid biosynthesis
which catalyze the incorporation of an acyl group from
either acylCoAs or acyl-acyl carrier proteins (acylACPs)
into acceptors such as glycerol 3-phosphate,
dihydroxyacetone phosphate or lyso-phosphatidic acid.
Included in this subgroup are such LPLATs as
lysophosphatidylcholine acyltransferase 1 (LPCAT-1),
glycerol-3-phosphate acyltransferase 3 (GPAT3), and
similar sequences.
Length = 211
Score = 224 bits (572), Expect = 3e-72
Identities = 84/226 (37%), Positives = 115/226 (50%), Gaps = 36/226 (15%)
Query: 137 RVMLFVLGFYWITETFRILDVQEKSENEAKNQSKDEDEAKDQDEESGRPGAIISNHVSYL 196
RV+LF GFY I + + P I++NH S++
Sbjct: 2 RVLLFAFGFYVIKV-------------------------HGKPDPPEAPRIIVANHTSFI 36
Query: 197 DILYHMSSSFPSFVAKRSVAKLPLVGLISKCLGCVYVQRESKSSDFKGVSGVVTERVREA 256
D L S FPS VAK+ + KLP +G I + LGC++V R V E ++E
Sbjct: 37 DPLILFSDLFPSIVAKKELGKLPFIGTILRALGCIFVDRSEPKD-----RKKVVEEIKER 91
Query: 257 HRDKSAPMMMLFP-GTTTNGDYLLPFKTGAFLARAPVLPVILRYPYQRFSPAWDSISGA- 314
D + P +++FP GTTTNG L+ FK GAF PV PV +RYP +F A+ + SG
Sbjct: 92 ATDPNWPPILIFPEGTTTNGKALIMFKKGAFEPGVPVQPVAIRYPN-KFVDAFWNSSGYS 150
Query: 315 --RHVFFLLCQFVNHIEVTSLPVYHPSQQEKDDPKLYAENVRRLMA 358
++F LL Q N +EV LPVY PS +E +DPK +A VR +MA
Sbjct: 151 SLMYLFRLLTQPANVLEVEFLPVYTPS-EEGEDPKEFANRVRLIMA 195
>gnl|CDD|153251 cd07989, LPLAT_AGPAT-like, Lysophospholipid Acyltransferases
(LPLATs) of Glycerophospholipid Biosynthesis:
AGPAT-like. Lysophospholipid acyltransferase (LPLAT)
superfamily member: acyltransferases of de novo and
remodeling pathways of glycerophospholipid biosynthesis
which catalyze the incorporation of an acyl group from
either acylCoAs or acyl-acyl carrier proteins (acylACPs)
into acceptors such as glycerol 3-phosphate,
dihydroxyacetone phosphate or lyso-phosphatidic acid.
Included in this subgroup are such LPLATs as
1-acyl-sn-glycerol-3-phosphate acyltransferase (AGPAT,
PlsC), Tafazzin (product of Barth syndrome gene), and
similar proteins.
Length = 184
Score = 91.9 bits (229), Expect = 5e-22
Identities = 38/133 (28%), Positives = 65/133 (48%), Gaps = 14/133 (10%)
Query: 183 GRPGAIISNHVSYLDILYHMSSSFP--SFVAKRSVAKLPLVGLISKCLGCVYVQRESKSS 240
P I++NH SYLD L ++ FVAK+ + K+P +G + + LG + + R + S
Sbjct: 23 KGPVIIVANHQSYLDPLVLGAALPRPIRFVAKKELFKIPFLGWLLRLLGAIPIDRGNGRS 82
Query: 241 DFKGVSGVVTERVREAHRDKSAPMMMLFP-GTTTNGDYLLPFKTGAFL----ARAPVLPV 295
+ + + E ++E +++FP GT + LLPFK+GAF A P++PV
Sbjct: 83 AREALREAI-EALKEGES------VVIFPEGTRSRDGELLPFKSGAFRLAKEAGVPIVPV 135
Query: 296 ILRYPYQRFSPAW 308
+ +
Sbjct: 136 AISGTWGSLPKGK 148
>gnl|CDD|214724 smart00563, PlsC, Phosphate acyltransferases. Function in
phospholipid biosynthesis and have either
glycerolphosphate, 1-acylglycerolphosphate, or
2-acylglycerolphosphoethanolamine acyltransferase
activities. Tafazzin, the product of the gene mutated in
patients with Barth syndrome, is a member of this
family.
Length = 118
Score = 87.0 bits (216), Expect = 5e-21
Identities = 35/123 (28%), Positives = 58/123 (47%), Gaps = 19/123 (15%)
Query: 188 IISNHVSYLDILYHMSSSF-----PSFVAKRSVAKLPLVGLISKCLGCVYVQRESKSSDF 242
+++NH S+LD L + FVAK+ + +PL+G + + LG +++ R +
Sbjct: 3 VVANHQSFLDPLVLSALLPRKLGRVRFVAKKELFYVPLLGWLLRLLGAIFIDRSNGRKA- 61
Query: 243 KGVSGVVTERVREAHRDKSAPM-MMLFP-GTTTNGDYLLPFKTGAFL----ARAPVLPVI 296
+REA +++FP GT + LLPFK GA A P++PV
Sbjct: 62 -------RAALREAVELLKEGEWLLIFPEGTRSRPGKLLPFKKGAARLALEAGVPIVPVA 114
Query: 297 LRY 299
+R
Sbjct: 115 IRG 117
>gnl|CDD|216567 pfam01553, Acyltransferase, Acyltransferase. This family contains
acyltransferases involved in phospholipid biosynthesis
and other proteins of unknown function. This family also
includes tafazzin, the Barth syndrome gene.
Length = 131
Score = 79.3 bits (196), Expect = 5e-18
Identities = 44/127 (34%), Positives = 68/127 (53%), Gaps = 19/127 (14%)
Query: 183 GRPGAIISNHVSYLDILYHMSSSFP------SFVAKRSVAKLPLVGLISKCLGCVYVQRE 236
G P +++NH SYLD L +S P FVAK + LPL+G + + LGC+++ R+
Sbjct: 13 GGPAIVVANHQSYLDPLL-LSLLLPKRGRPLVFVAKDELLNLPLLGWLMRLLGCIFIDRK 71
Query: 237 SKSSDFKGVSGVVTERVREAHRDKSAPMMMLFP-GTTTNGDYLLPFKTGAF----LARAP 291
+ + +V E +RE ++++FP GT + G LLPFK GAF A P
Sbjct: 72 NAKDAANTLEYLV-ELLREGE------LVLIFPEGTRSRGGELLPFKKGAFRLAREAGVP 124
Query: 292 VLPVILR 298
++PV +
Sbjct: 125 IVPVAIS 131
>gnl|CDD|129621 TIGR00530, AGP_acyltrn, 1-acyl-sn-glycerol-3-phosphate
acyltransferases. This model describes the core
homologous region of a collection of related proteins,
several of which are known to act as
1-acyl-sn-glycerol-3-phosphate acyltransferases (EC
2.3.1.51). Proteins scoring above the trusted cutoff are
likely to have the same general activity. However, there
is variation among characterized members as to whether
the acyl group can be donated by acyl carrier protein or
coenzyme A, and in the length and saturation of the
donated acyl group. 1-acyl-sn-glycerol-3-phosphate
acyltransferase is also called 1-AGP acyltransferase,
lysophosphatidic acid acyltransferase, and LPA
acyltransferase [Fatty acid and phospholipid metabolism,
Biosynthesis].
Length = 130
Score = 75.5 bits (186), Expect = 1e-16
Identities = 37/131 (28%), Positives = 65/131 (49%), Gaps = 16/131 (12%)
Query: 176 KDQDEESGRPGAIISNHVSYLDILYHMSSSFP---SFVAKRSVAKLPLVGLISKCLGCVY 232
++ + P +++NH S LD L +S++FP F+AK+ + +P G++ G ++
Sbjct: 8 GPENLPAKSPVLVVANHQSNLDPLT-LSAAFPPPIVFIAKKELKWIPFFGIMLWLTGAIF 66
Query: 233 VQRESKSSDFKGVSGVVTERVREAHRDKSAPMMMLFP-GTTTNGDYLLPFKTGAFL---- 287
+ RE+ + + E + + + FP GT + G +LPFK GAF
Sbjct: 67 IDRENIRAI-----ATALKAAIEVLKQGRSIGV--FPEGTRSRGRDILPFKKGAFHIAIK 119
Query: 288 ARAPVLPVILR 298
A P+LPV+L
Sbjct: 120 AGVPILPVVLS 130
>gnl|CDD|223282 COG0204, PlsC, 1-acyl-sn-glycerol-3-phosphate acyltransferase
[Lipid metabolism].
Length = 255
Score = 74.9 bits (184), Expect = 2e-15
Identities = 39/125 (31%), Positives = 63/125 (50%), Gaps = 20/125 (16%)
Query: 188 IISNHVSYLDILYHMSSSFP-----SFVAKRSVAKLPLVGLISKCLGCVYVQRESKSSDF 242
+++NH S+LD L +S + P FVAK+ + K+PL+G + + LG + V RE+
Sbjct: 68 VVANHQSFLDPLL-LSLALPRRGPVRFVAKKELFKVPLLGWLLRLLGAIPVDRENPD--- 123
Query: 243 KGVSGVVTERVREAHRDKSAPMMMLFP-GTTTN-GDYLLPFKTGAFL----ARAPVLPVI 296
R++ R +++FP GT + G+ LLPFK GA A P++PV
Sbjct: 124 DETLRAAVARLKAGGR-----SLVIFPEGTRSRGGEELLPFKRGAARLALEAGVPIVPVA 178
Query: 297 LRYPY 301
+
Sbjct: 179 IVGAE 183
>gnl|CDD|215447 PLN02833, PLN02833, glycerol acyltransferase family protein.
Length = 376
Score = 51.7 bits (124), Expect = 2e-07
Identities = 50/189 (26%), Positives = 87/189 (46%), Gaps = 26/189 (13%)
Query: 182 SGRPGAI-ISNHVSYLD--ILYHMSSSFPSFVAKRSVAKLPLVGLISK----CLGCVYVQ 234
S RP + ++NH S +D +L M+ F + K VG + +GC++
Sbjct: 160 SRRPKQVFVANHTSMIDFIVLEQMTP-FAVIMQKHP----GWVGFLQNTILESVGCIWFN 214
Query: 235 R-ESKSSDFKGVSGVVTERVREAHRDKSAPMMMLFP-GTTTNGDYLLPFKTGAFLARAPV 292
R E+K + VV +++R+ +D +++FP GT N +Y + FK GAF V
Sbjct: 215 RTEAKDRE------VVAKKLRDHVQDPDRNPLLIFPEGTCVNNEYTVMFKKGAFELGCTV 268
Query: 293 LPVILRYPYQRFSPAWDS--ISGARHVFFLLCQFVNHIEVTSLPVYHP-SQQEKDDPKLY 349
P+ ++Y W+S S H+ L+ + +V L P + + + P +
Sbjct: 269 CPIAIKYNKIFVDAFWNSRKQSFTMHLLRLMTSWAVVCDVWYL---EPQTLRPGETPIEF 325
Query: 350 AENVRRLMA 358
AE VR ++A
Sbjct: 326 AERVRDMIA 334
>gnl|CDD|215488 PLN02901, PLN02901, 1-acyl-sn-glycerol-3-phosphate acyltransferase.
Length = 214
Score = 49.0 bits (117), Expect = 9e-07
Identities = 35/120 (29%), Positives = 59/120 (49%), Gaps = 15/120 (12%)
Query: 185 PGAIISNHVSYLDI--LYHMSSSFPSFVAKRSVAKLPLVGLISKCLGCVYVQRESKSSDF 242
P +SNH S+LDI L+H+ F F++K S+ +P++G G + ++R + S
Sbjct: 51 PAVYVSNHQSFLDIYTLFHLGRPF-KFISKTSIFLIPIIGWAMYMTGHIPLKRMDRRSQL 109
Query: 243 KGVSGVVTERVREAHRDKSAPMMMLFP-GTTTNGDYLLPFKTGAFL----ARAPVLPVIL 297
+ + +R E + ++ + FP GT + L FK GAF PV+P+ L
Sbjct: 110 ECL-----KRCMELLKKGAS--VFFFPEGTRSKDGKLAAFKKGAFSVAAKTGVPVVPITL 162
>gnl|CDD|153244 cd06551, LPLAT, Lysophospholipid acyltransferases (LPLATs) of
glycerophospholipid biosynthesis. Lysophospholipid
acyltransferase (LPLAT) superfamily members are
acyltransferases of de novo and remodeling pathways of
glycerophospholipid biosynthesis. These proteins
catalyze the incorporation of an acyl group from either
acylCoAs or acyl-acyl carrier proteins (acylACPs) into
acceptors such as glycerol 3-phosphate, dihydroxyacetone
phosphate or lyso-phosphatidic acid. Included in this
superfamily are LPLATs such as glycerol-3-phosphate
1-acyltransferase (GPAT, PlsB),
1-acyl-sn-glycerol-3-phosphate acyltransferase (AGPAT,
PlsC), lysophosphatidylcholine acyltransferase 1
(LPCAT-1), lysophosphatidylethanolamine acyltransferase
(LPEAT, also known as, MBOAT2, membrane-bound
O-acyltransferase domain-containing protein 2), lipid A
biosynthesis lauroyl/myristoyl acyltransferase,
2-acylglycerol O-acyltransferase (MGAT),
dihydroxyacetone phosphate acyltransferase (DHAPAT, also
known as 1 glycerol-3-phosphate O-acyltransferase 1) and
Tafazzin (the protein product of the Barth syndrome
(TAZ) gene).
Length = 187
Score = 46.6 bits (111), Expect = 3e-06
Identities = 38/194 (19%), Positives = 59/194 (30%), Gaps = 37/194 (19%)
Query: 177 DQDEESGRPGAIISNHVSYLD------ILYHMSSSFPSFVAKRSVAKLPLVGLISKCLGC 230
G P +SNH S+ D +L + L ++ G
Sbjct: 19 PPPPPGGGPVLFVSNHSSWWDGLILFLLLERGLRRDVYGLMDE--ELLERYPFFTRL-GA 75
Query: 231 VYVQRESKSSDFKGVSGVVTERVREAHRDKSAPMMMLFP-GTTTNGDY-LLPFKTGAF-- 286
V R+S S K + V K ++ +FP GT T D L FK G
Sbjct: 76 FSVDRDSPRSAAKSLKYVA------RLLSKPGSVVWIFPEGTRTRRDKRPLQFKPGVAHL 129
Query: 287 --LARAPVLPVILRYPYQRFSPAWDSISGARHVFFLLCQFVNHIEVTSLPVYHPSQQEKD 344
A P++PV LRY + + + Y + ++
Sbjct: 130 AEKAGVPIVPVALRYTF----------------ELFEQFPEIFVRIGPPIPYAETALGEE 173
Query: 345 DPKLYAENVRRLMA 358
A + RL+
Sbjct: 174 LAAELANRLTRLLD 187
>gnl|CDD|184979 PRK15018, PRK15018, 1-acyl-sn-glycerol-3-phosphate acyltransferase;
Provisional.
Length = 245
Score = 46.9 bits (111), Expect = 5e-06
Identities = 38/127 (29%), Positives = 59/127 (46%), Gaps = 13/127 (10%)
Query: 176 KDQDEESGRPGAIISNHVSYLDILYHMSSSFPSFV--AKRSVAKLPLVGLISKCLGCVYV 233
K D ES I+NH + D++ + P V K+S+ +P G + G + +
Sbjct: 57 KPADAESYGNAIYIANHQNNYDMVTASNIVQPPTVTVGKKSLLWIPFFGQLYWLTGNLLI 116
Query: 234 QRESKSSDFKGVSGVVTERVREAHRDKSAPMMMLFP-GTTTNGDYLLPFKTGAF----LA 288
R +++ ++ VV H K + +FP GT + G LLPFKTGAF A
Sbjct: 117 DRNNRTKAHGTIAEVVN------HFKKRRISIWMFPEGTRSRGRGLLPFKTGAFHAAIAA 170
Query: 289 RAPVLPV 295
P++PV
Sbjct: 171 GVPIIPV 177
>gnl|CDD|153254 cd07992, LPLAT_AAK14816-like, Lysophospholipid Acyltransferases
(LPLATs) of Glycerophospholipid Biosynthesis: Unknown
AAK14816-like. Lysophospholipid acyltransferase (LPLAT)
superfamily member: acyltransferases of de novo and
remodeling pathways of glycerophospholipid biosynthesis
which catalyze the incorporation of an acyl group from
either acylCoAs or acyl-acyl carrier proteins (acylACPs)
into acceptors such as glycerol 3-phosphate,
dihydroxyacetone phosphate or lyso-phosphatidic acid.
Included in this subgroup are uncharacterized
glycerol-3-phosphate acyltransferases such as the
Plasmodium falciparum locus AAK14816 putative
acyltransferase, and similar proteins.
Length = 203
Score = 40.7 bits (96), Expect = 4e-04
Identities = 23/83 (27%), Positives = 36/83 (43%), Gaps = 6/83 (7%)
Query: 207 PSFVAKRSVAKLPLVGLISKCLGCVYVQRESKSSDFKGVSGVVT---ERVREAHRDKSAP 263
F+AK + K PL+G + + G + V R + + V EA + A
Sbjct: 54 VRFLAKADLFKNPLIGWLLESFGAIPVYRPKDLARGGIGKISNAAVFDAVGEALKAGGA- 112
Query: 264 MMMLFP-GTTTNGDYLLPFKTGA 285
+ +FP G + + LLP K GA
Sbjct: 113 -IGIFPEGGSHDRPRLLPLKAGA 134
>gnl|CDD|153252 cd07990, LPLAT_LCLAT1-like, Lysophospholipid Acyltransferases
(LPLATs) of Glycerophospholipid Biosynthesis:
LCLAT1-like. Lysophospholipid acyltransferase (LPLAT)
superfamily member: acyltransferases of de novo and
remodeling pathways of glycerophospholipid biosynthesis
which catalyze the incorporation of an acyl group from
either acylCoAs or acyl-acyl carrier proteins (acylACPs)
into acceptors such as glycerol 3-phosphate,
dihydroxyacetone phosphate or lyso-phosphatidic acid.
Included in this subgroup are such LPLATs as
Lysocardiolipin acyltransferase 1 (LCLAT1) or
1-acyl-sn-glycerol-3-phosphate acyltransferase and
similar proteins.
Length = 193
Score = 39.5 bits (93), Expect = 0.001
Identities = 15/55 (27%), Positives = 23/55 (41%), Gaps = 7/55 (12%)
Query: 188 IISNHVSYLDILYHMSSSFPS-------FVAKRSVAKLPLVGLISKCLGCVYVQR 235
IISNH S +D L + V K S+ PL G + ++++R
Sbjct: 28 IISNHRSEVDWLVLWMLADRFGRLGRLKIVLKDSLKYPPLGGWGWQLGEFIFLKR 82
>gnl|CDD|236315 PRK08633, PRK08633, 2-acyl-glycerophospho-ethanolamine
acyltransferase; Validated.
Length = 1146
Score = 35.3 bits (82), Expect = 0.061
Identities = 37/132 (28%), Positives = 55/132 (41%), Gaps = 28/132 (21%)
Query: 189 ISNHVSYLD-ILYHMSSSFP-SFVAKRSVAKLPLVGLISKCLGCVYV-QRESKSSDFKGV 245
+ NHVS++D L +S P FV +RS+ + + K G + + SK S
Sbjct: 446 LGNHVSWIDWALLQAASPRPIRFVMERSIYEKWYLKWFFKLFGVIPISSGGSKES----- 500
Query: 246 SGVVTERVREAHRDKSAPMMMLFP--GTTTNGDYLLPFKTGAFLA----RAPVLPVILRY 299
E +R+A D ++ +FP T NG L FK G L P++P +R
Sbjct: 501 ----LEFIRKALDDGE--VVCIFPEGAITRNG-QLNEFKRGFELIVKGTDVPIIPFYIR- 552
Query: 300 PYQRFSPAWDSI 311
W SI
Sbjct: 553 ------GLWGSI 558
>gnl|CDD|237584 PRK14014, PRK14014, putative acyltransferase; Provisional.
Length = 301
Score = 34.4 bits (80), Expect = 0.066
Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 5/57 (8%)
Query: 188 IISNHVSYLDILYHMSSS-----FPSFVAKRSVAKLPLVGLISKCLGCVYVQRESKS 239
+ISNH S++DIL F K+ + +P +GL L +++R SK+
Sbjct: 91 VISNHQSWVDILVLQYVFNRRIPMLKFFLKQELIWVPFLGLAWWALDFPFMKRYSKA 147
>gnl|CDD|131331 TIGR02278, PaaN-DH, phenylacetic acid degradation protein paaN.
This enzyme is proposed to act in the ring-opening step
of phenylacetic acid degradation which follows ligation
of the acid with coenzyme A (by PaaF) and hydroxylation
by a multicomponent non-heme iron hydroxylase complex
(PaaGHIJK). Gene symbols have been standardized in. This
enzyme is related to aldehyde dehydrogenases and has
domains which are members of the pfam00171 and pfam01575
families. This family includes paaN genes from
Pseudomonas, Sinorhizobium, Rhodopseudomonas,
Escherichia, Deinococcus and Corynebacterium. Another
homology family (TIGR02288) includes several other
species.
Length = 663
Score = 32.1 bits (73), Expect = 0.50
Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Query: 256 AHRDKSAPMMMLFPGTTTNGDYLLPFKTGAFLARAPVLPVILRY 299
AH D+ A F +G ++L G F+ AP PV+ Y
Sbjct: 559 AHMDEIAARESFFGKRVAHGYFVLSAAAGLFVDPAPG-PVLANY 601
>gnl|CDD|214338 CHL00025, ndhF, NADH dehydrogenase subunit 5.
Length = 741
Score = 31.4 bits (72), Expect = 0.93
Identities = 12/24 (50%), Positives = 15/24 (62%)
Query: 140 LFVLGFYWITETFRILDVQEKSEN 163
L +LGFYWIT +F D+ E N
Sbjct: 191 LGILGFYWITGSFEFRDLFEIFNN 214
>gnl|CDD|223547 COG0471, CitT, Di- and tricarboxylate transporters [Inorganic ion
transport and metabolism].
Length = 461
Score = 30.8 bits (70), Expect = 1.3
Identities = 15/77 (19%), Positives = 32/77 (41%), Gaps = 6/77 (7%)
Query: 76 MVTLLPIRVVLAMTVLVIYYLICRVCTLFSAPNRGEDEQEDYAHMGGWRRSVVVVTGRFL 135
+ +LP+ ++L + +L++ Y + + PN + + +G R ++ G FL
Sbjct: 211 FLAMLPLGILLLLLLLLLLYKLFPPREIKETPNNPVAAKRELKELGPLLRDEKLLLGIFL 270
Query: 136 SRVMLFVLGFYWITETF 152
+L WI
Sbjct: 271 ------LLLLLWIFGKL 281
>gnl|CDD|220565 pfam10095, DUF2333, Uncharacterized protein conserved in bacteria
(DUF2333). Members of this family of hypothetical
bacterial proteins have no known function.
Length = 337
Score = 30.0 bits (68), Expect = 2.0
Identities = 16/62 (25%), Positives = 28/62 (45%), Gaps = 7/62 (11%)
Query: 112 DEQEDYAHMGGWRRSVVVVTGRFLSRVMLFVLGFYWITE--TFRILDVQEKSENEAKNQS 169
+ G ++V+ +L ++L++LG YW E F DVQ K++ AK
Sbjct: 2 ADGPRTMGEKGILKTVLGALAVYL--LILYLLGIYWSFEPAAF---DVQTKAQEAAKQNQ 56
Query: 170 KD 171
+
Sbjct: 57 QK 58
>gnl|CDD|177562 PHA03234, PHA03234, DNA packaging protein UL33; Provisional.
Length = 338
Score = 29.9 bits (67), Expect = 2.1
Identities = 22/124 (17%), Positives = 49/124 (39%), Gaps = 34/124 (27%)
Query: 68 EKFLIGIAMVTLLPIRVVLAMTVLVIYYLICR-------VCTLFSAPNRGEDEQEDYAHM 120
E + GI + ++P+ +++ + L+IY+ + + + TLF++ D+ HM
Sbjct: 35 ESAINGIMLTLIIPMIIIV-ICTLIIYHKVAKHNATSFYLITLFAS---------DFLHM 84
Query: 121 GGW-------RRSVVVVTGRFLSRVMLFV--------LGFYWITETFRILDVQEKSENEA 165
R + + + +LF+ + I T R + + +N+
Sbjct: 85 --LCVFFLTLNREALFNFNQAFCQCVLFIYHASCSYSICMLAIIATIRYKTLHRRKKNDK 142
Query: 166 KNQS 169
KN
Sbjct: 143 KNNH 146
>gnl|CDD|236260 PRK08411, PRK08411, flagellin; Reviewed.
Length = 572
Score = 30.0 bits (67), Expect = 2.2
Identities = 15/44 (34%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
Query: 1 MESELKDLNSKQLKSTASSDDGGSAKDDRPLLKPDAADNIQELE 44
M+ +LK L++ + K+T ++ DG S K R +L+ D ++EL+
Sbjct: 82 MDEQLKILDTIKTKATQAAQDGQSLK-TRTMLQADINRLMEELD 124
>gnl|CDD|217223 pfam02775, TPP_enzyme_C, Thiamine pyrophosphate enzyme,
C-terminal TPP binding domain.
Length = 151
Score = 28.3 bits (64), Expect = 3.4
Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 7/40 (17%)
Query: 50 YVRNDVYGTMGRGELPLAEKFLIGIAMVTLLPIRVVLAMT 89
Y+ + GTMG G LP A IG + P R V+A+
Sbjct: 21 YLTSGGLGTMGYG-LPAA----IGAKL--ARPDRPVVAIA 53
>gnl|CDD|239536 cd03452, MaoC_C, MaoC_C The C-terminal hot dog fold of the MaoC
(monoamine oxidase C) dehydratase regulatory protein.
Orthologs of MaoC include PaaZ [Escherichia coli] and
PaaN [Pseudomonas putida], which are putative
ring-opening enzymes involved in phenylacetic acid
degradation. The C-terminal domain of MaoC has sequence
similarity to (R)-specific enoyl-CoA
hydratase,Hydratase-Dehydrogenase-Epimerase (HDE)
protein, and the fatty acid synthase beta subunit. MaoC
also has an N-terminal PutA domain like that found in
the E. coli PutA proline dehydrogenase and other members
of the aldehyde dehydrogenase family.
Length = 142
Score = 28.1 bits (63), Expect = 3.8
Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Query: 256 AHRDKSAPMMMLFPGTTTNGDYLLPFKTGAFLARAPVLPVILRY 299
AH D+ A F +G ++L G F+ AP PV+ Y
Sbjct: 36 AHMDEIAAKASFFGKRVAHGYFVLSAAAGLFVDPAPG-PVLANY 78
>gnl|CDD|237146 PRK12584, PRK12584, flagellin A; Reviewed.
Length = 510
Score = 29.1 bits (65), Expect = 4.0
Identities = 13/44 (29%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Query: 1 MESELKDLNSKQLKSTASSDDGGSAKDDRPLLKPDAADNIQELE 44
M+ +LK L++ ++K+T ++ DG + + R ++ D IQ L+
Sbjct: 82 MDEQLKILDTIKVKATQAAQDGQTT-ESRKAIQSDIVRLIQGLD 124
>gnl|CDD|172158 PRK13589, PRK13589, flagellin; Provisional.
Length = 576
Score = 28.5 bits (63), Expect = 6.9
Identities = 15/44 (34%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
Query: 1 MESELKDLNSKQLKSTASSDDGGSAKDDRPLLKPDAADNIQELE 44
M+ +LK L++ + K+T ++ DG S K R +L+ D ++EL+
Sbjct: 82 MDEQLKILDTIKTKATQAAQDGQSLK-TRTMLQADINRLMEELD 124
>gnl|CDD|176954 CHL00011, ndhD, NADH dehydrogenase subunit 4.
Length = 498
Score = 28.0 bits (63), Expect = 9.3
Identities = 24/94 (25%), Positives = 38/94 (40%), Gaps = 25/94 (26%)
Query: 244 GVSGVVTERVREAHRDKSAPMMMLFPGTTTNGDYLLPFKTGAFLARA------PVLPV-I 296
G+SG V E +++F G T+ YLL K A P+ + +
Sbjct: 390 GMSGFVAE-------------LIVFFGIITSQKYLLMPKILITFVMAIGMILTPIYLLSM 436
Query: 297 LR---YPYQRF--SPAWDSISGARHVFFLLCQFV 325
LR Y Y+ F ++ SG R +F +C +
Sbjct: 437 LRQMFYGYKLFNVPNSYFFDSGPRELFISICILL 470
>gnl|CDD|218122 pfam04515, Choline_transpo, Plasma-membrane choline transporter.
This family represents a high-affinity plasma-membrane
choline transporter in C.elegans which is thought to be
rate-limiting for ACh synthesis in cholinergic nerve
terminals.
Length = 327
Score = 27.9 bits (63), Expect = 9.4
Identities = 11/76 (14%), Positives = 29/76 (38%), Gaps = 9/76 (11%)
Query: 76 MVTLLPIRVVLAMTVLVIYYLICRVCTLFSAPNRGEDEQEDYAHMGGWRRSVVVVTGRFL 135
+ L+P+ LA+ + +++ V G+ + + G L
Sbjct: 43 SLLLVPLITFLALAAFIALWIVVAVALY----TSGDPKYNNGGCPTG----GEYKYDSKL 94
Query: 136 SRVMLF-VLGFYWITE 150
++++ + G +W +E
Sbjct: 95 IGLLVYLLFGLFWTSE 110
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.135 0.396
Gapped
Lambda K H
0.267 0.0707 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 19,170,737
Number of extensions: 1855256
Number of successful extensions: 1724
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1700
Number of HSP's successfully gapped: 29
Length of query: 375
Length of database: 10,937,602
Length adjustment: 98
Effective length of query: 277
Effective length of database: 6,590,910
Effective search space: 1825682070
Effective search space used: 1825682070
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (26.9 bits)