RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 017250
(375 letters)
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 48.7 bits (115), Expect = 3e-06
Identities = 38/257 (14%), Positives = 75/257 (29%), Gaps = 75/257 (29%)
Query: 148 ITETFRILDVQEKSENEAKNQSKDEDEAKDQD-------EESGRPGAIISNHVSYLDILY 200
++ T R+ + E + +E + E +P + ++ D LY
Sbjct: 61 VSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLY 120
Query: 201 HMSSSFPSFVAKRSVAKLPLVGLISKCLGCVYVQRESKSSDFKGVSGVVTERVREAHRDK 260
+ + F K +V++L + + L E + + + G
Sbjct: 121 NDNQVFA----KYNVSRLQPYLKLRQAL------LELRPAKNVLIDG------------- 157
Query: 261 SAPMMMLFPGTTTNGDYLLPFKTGAFLARAPVL---PVILRYPYQRFSPAWDSISGARHV 317
+ G+ G KT ++A V V + ++ F W ++
Sbjct: 158 ---V----LGS---G------KT--WVA-LDVCLSYKVQCKMDFKIF---WLNLKNCNSP 195
Query: 318 FFLLCQFVN---HIEVTSLPVYHPSQQEKDDPKLYAENVRRLMASE-----------VWI 363
+L I+ S K +RRL+ S+ V
Sbjct: 196 ETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQN 255
Query: 364 SSFTKA------ELLTS 374
+ A LLT+
Sbjct: 256 AKAWNAFNLSCKILLTT 272
Score = 29.4 bits (65), Expect = 2.1
Identities = 24/143 (16%), Positives = 34/143 (23%), Gaps = 39/143 (27%)
Query: 179 DEESGRPGAIISNHVSYLDILYHMSSSFPSFVAKRSVAKLPLVGLISKCLGCVYVQRESK 238
D E+G + Y DIL +FV C VQ K
Sbjct: 8 DFETGE------HQYQYKDILSVFE---DAFV---------------DNFDCKDVQDMPK 43
Query: 239 ----SSDFKGV--SGVVTERVR---EAHRDKSAPMMMLFPGTTTNGDYLLPFKTGAFLA- 288
+ + S K M+ F +Y F
Sbjct: 44 SILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINY--KFLMSPIKTE 101
Query: 289 -RAPVLPVILRYPYQRFSPAWDS 310
R P + Y QR ++
Sbjct: 102 QRQPSMMTR-MYIEQR-DRLYND 122
Score = 29.4 bits (65), Expect = 2.6
Identities = 38/284 (13%), Positives = 75/284 (26%), Gaps = 85/284 (29%)
Query: 7 DLNSKQLKSTASS---DDGGSAKDDRPLLKPDAADNIQELEKK--FAPYVRNDVYGTMGR 61
+L+ K L +T D +A L + + E K Y+
Sbjct: 263 NLSCKILLTTRFKQVTDFLSAATTTHISLD-HHSMTLTPDEVKSLLLKYLDCRP------ 315
Query: 62 GELPLAEKFLIG---IAMVTLLPIRVVLAMTVLVIYYLICRVCTLFSA------PNRGED 112
+LP E ++++ IR LA + ++ T+ + P +
Sbjct: 316 QDLP-REVLTTNPRRLSIIAES-IRDGLATWDNWKHVNCDKLTTIIESSLNVLEPA---E 370
Query: 113 EQEDYAHMGGWRRSVVVVTGRFLSRVMLFVLGFYW---ITE------------------- 150
++ + + + S + +L W I
Sbjct: 371 YRKMFDRLSVFPPSA---------HIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQP 421
Query: 151 ---TFRI----LDVQEKSENEAKNQSK--DEDEAKDQDEESGRPGAIISNHVSYLDILYH 201
T I L+++ K ENE D + + + Y I +H
Sbjct: 422 KESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYF-YSHIGHH 480
Query: 202 MS--------SSFP------SFVAKRSVAKLPLVGLISKCLGCV 231
+ + F F+ K+ G +
Sbjct: 481 LKNIEHPERMTLFRMVFLDFRFLE----QKIRHDSTAWNASGSI 520
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 44.3 bits (104), Expect = 5e-05
Identities = 55/390 (14%), Positives = 111/390 (28%), Gaps = 136/390 (34%)
Query: 29 RPLLKP---DAADNIQELEKKFAPYVRNDVYGT--------MGRGELPLAEKFLIGIAMV 77
L+ +A+ + EL + V+ P + +L+ I +
Sbjct: 181 HVLVGDLIKFSAETLSELIR--TTLDAEKVFTQGLNILEWLENPSNTP-DKDYLLSIP-I 236
Query: 78 TLLPIRVVLAMTVLVIYYLICRVCTLFSAPNRGEDEQEDYAHM-GGWRRSVVVVTGRFLS 136
+ P+ + + L Y + ++ G E +++ G S +VT ++
Sbjct: 237 SC-PL---IGVIQLAHYVVTAKLL--------GFTPGELRSYLKGATGHSQGLVTAVAIA 284
Query: 137 ------------RVMLFVLGFYWI----TETFRILDVQEKSENEAKNQSKDEDEAKDQDE 180
R + VL F +I E + + S + +E
Sbjct: 285 ETDSWESFFVSVRKAITVL-F-FIGVRCYEAYPNTSL----PPSILEDSLENNE------ 332
Query: 181 ESGRPGAIISNHVSYLDILYHMSSSFPSFVAKRSVAKLPLVGLISKCLGCVYVQRESKSS 240
G P M S + ++ + + ++K ++ +
Sbjct: 333 --GVPS--------------PMLS-----I--SNLTQEQVQDYVNKT--NSHLPAGKQVE 367
Query: 241 DFKGVS---G----VVT------ERVREAHRDKSAPMMMLFPGTTTNGDYLLPFKTGAFL 287
+S G VV+ + R AP G + +PF
Sbjct: 368 ----ISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAP-----SGLDQSR---IPFS----- 410
Query: 288 ARAPV-----LPVILRY--PYQRFSPAWDSISGARHVFFLLCQFVNHIEVTSL--PVYHP 338
R LPV + PA D I+ L+ V+ + PVY
Sbjct: 411 ERKLKFSNRFLPVASPFHSHL--LVPASDLINKD-----LVKNNVS-FNAKDIQIPVYDT 462
Query: 339 SQQEKDDPKLYAENVRRLMASEV------W 362
D ++ + ++ + + W
Sbjct: 463 FDGS--DLRVLSGSISERIVDCIIRLPVKW 490
Score = 36.2 bits (83), Expect = 0.021
Identities = 40/280 (14%), Positives = 81/280 (28%), Gaps = 106/280 (37%)
Query: 125 RSVVVVTGRFLSRVMLFV-LGFYWITETFRILDVQEKSENEAKNQSKDEDE--------- 174
R + + G +L V ++I + + K E +DE
Sbjct: 7 RPLTLSHGSL--EHVLLVPTASFFIASQLQ--EQFNKILPEPTEGFAADDEPTTPAELVG 62
Query: 175 -------AKDQDEESGRPGAIISNHV-----SYL---DILYHMSSSFPSFVAK---RSVA 216
+ + + G+ +++ + YL DI H + AK +
Sbjct: 63 KFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDI--H------ALAAKLLQENDT 114
Query: 217 KLPLVGLISKCLGCVYVQ----------RESKSSDFKGVSGVVTERVREAHRDKSAPMMM 266
L + K Y+ ++S S+ F A + +A ++
Sbjct: 115 TLVKTKELIKN----YITARIMAKRPFDKKSNSALF------------RAVGEGNAQLVA 158
Query: 267 LFPGTTTNGDYLLPFKTGAFLARAPVLPVILRYPYQRFSPAWDSISGARHVFFLLCQFVN 326
+F G DY F+ LR YQ + L+
Sbjct: 159 IFGGQGNTDDY---FEE-------------LRDLYQTYHV-------------LVGDL-- 187
Query: 327 HIEVTSLPVYHPSQQEKDDPKLYAE--NVRRLMASEVWIS 364
I+ ++ + + D K++ + N+ W+
Sbjct: 188 -IKFSAETLSELIRTTLDAEKVFTQGLNILE------WLE 220
Score = 30.0 bits (67), Expect = 1.5
Identities = 11/46 (23%), Positives = 18/46 (39%), Gaps = 5/46 (10%)
Query: 61 RGEL-----PLAEKFLIGIAMVTLLPIRVVLAMTVLVIYYLICRVC 101
RG P E M+ + P RV + + + Y++ RV
Sbjct: 1789 RGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVG 1834
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 31.7 bits (71), Expect = 0.24
Identities = 13/77 (16%), Positives = 21/77 (27%), Gaps = 29/77 (37%)
Query: 105 SAPNRGEDEQEDYAHMGGWRRSVVVVTGRFLSRVMLFVLGFYWITETFRILDVQEKSENE 164
+ +R E E + WR E R +QE
Sbjct: 75 AQADRLTQEPE---SIRKWR-------------------------EEQRK-RLQELDAAS 105
Query: 165 AKNQSKDEDEAKDQDEE 181
+ + ++AK EE
Sbjct: 106 KVMEQEWREKAKKDLEE 122
Score = 29.4 bits (65), Expect = 1.5
Identities = 7/41 (17%), Positives = 18/41 (43%), Gaps = 6/41 (14%)
Query: 147 WITETFRILDVQEKSENE----AKNQSKDEDEA--KDQDEE 181
W + + L+ + ++E K ++ D+A + D +
Sbjct: 112 WREKAKKDLEEWNQRQSEQVEKNKINNRIADKAFYQQPDAD 152
>1d1r_A Hypothetical 11.4 KD protein YCIH in PYRF-OSMB intergenic region;
alpha-beta plait, open-faced beta sandwich,
ferredoxin-like fold; NMR {Escherichia coli} SCOP:
d.64.1.1
Length = 116
Score = 28.2 bits (63), Expect = 1.7
Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 4/46 (8%)
Query: 2 ESELKDLNSKQLKSTASSDDGGSAKDDRPLLKPDAADNIQE-LEKK 46
++EL L + +LK GG+ KD ++ D D ++ LE K
Sbjct: 57 DAELTKL-AAELKKKCGC--GGAVKDGVIEIQGDKRDLLKSLLEAK 99
>2ox0_A JMJC domain-containing histone demethylation PROT; double-stranded
beta helix, demethylase, oxygenase, SGC, STR genomics,
structural genomics consortium, oxidoreductase; HET: MLY
ALY OGA; 1.95A {Homo sapiens} PDB: 2oq7_A* 2os2_A*
2ot7_A* 2oq6_A* 2vd7_A* 2ybk_A* 2ybp_A* 2ybs_A* 3njy_A*
3pdq_A* 3u4s_A* 2p5b_A* 2q8c_A* 2q8d_A* 2q8e_A* 2gp5_A*
2gp3_A* 2wwj_A* 2pxj_A* 2xml_A*
Length = 381
Score = 28.5 bits (62), Expect = 3.9
Identities = 4/27 (14%), Positives = 10/27 (37%)
Query: 334 PVYHPSQQEKDDPKLYAENVRRLMASE 360
++P+ +E + Y + A
Sbjct: 37 MTFYPTMEEFRNFSRYIAYIESQGAHR 63
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 27.6 bits (60), Expect = 4.1
Identities = 7/27 (25%), Positives = 11/27 (40%), Gaps = 7/27 (25%)
Query: 323 QFVNHIEVTSLPVYHPSQQEKDD-PKL 348
Q + ++ SL +Y D P L
Sbjct: 20 QALKKLQ-ASLKLYAD-----DSAPAL 40
>1iuq_A Glycerol-3-phosphate acyltransferase; open twisted alpha/beta, four
helix bundle; 1.55A {Cucurbita moschata} SCOP: c.112.1.1
PDB: 1k30_A
Length = 367
Score = 27.9 bits (61), Expect = 6.3
Identities = 17/67 (25%), Positives = 24/67 (35%), Gaps = 11/67 (16%)
Query: 181 ESGRPGAIISNHVSYLD------ILYHMSSSFPS---FVAKRSVAKLPLVGLISKCLG-- 229
+ G +ISNH + D +L + FVA V PL S
Sbjct: 127 QQGHNVVLISNHQTEADPAIISLLLEKTNPYIAENTIFVAGDRVLADPLCKPFSIGRNLI 186
Query: 230 CVYVQRE 236
CVY ++
Sbjct: 187 CVYSKKH 193
>3dxt_A JMJC domain-containing histone demethylation PROT; JMJD2D, histone
demethylase, H3K9, jumonji domain-CONT protein 2D,
oxidoreductase; 1.80A {Homo sapiens} PDB: 3dxu_A*
2w2i_A*
Length = 354
Score = 27.6 bits (60), Expect = 6.4
Identities = 6/34 (17%), Positives = 15/34 (44%)
Query: 327 HIEVTSLPVYHPSQQEKDDPKLYAENVRRLMASE 360
++ ++HP+++E +D Y + A
Sbjct: 12 QNPNCNIMIFHPTKEEFNDFDKYIAYMESQGAHR 45
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.135 0.396
Gapped
Lambda K H
0.267 0.0501 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,644,464
Number of extensions: 335881
Number of successful extensions: 548
Number of sequences better than 10.0: 1
Number of HSP's gapped: 544
Number of HSP's successfully gapped: 13
Length of query: 375
Length of database: 6,701,793
Length adjustment: 95
Effective length of query: 280
Effective length of database: 4,049,298
Effective search space: 1133803440
Effective search space used: 1133803440
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.7 bits)