BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017252
(375 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2ECT|A Chain A, Solution Structure Of The Zinc Finger, C3hc4 Type (Ring
Finger) Domain Of Ring Finger Protein 126
Length = 78
Score = 65.5 bits (158), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 24/44 (54%), Positives = 32/44 (72%)
Query: 242 LQCSVCLDDFEIGTEAKEMPCKHKFHSQCILPWLELHSSCPVCR 285
L+C VC +D+ +G +++PC H FH CI+PWLE H SCPVCR
Sbjct: 16 LECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCR 59
>pdb|2L0B|A Chain A, Solution Nmr Structure Of Zinc Finger Domain Of E3
Ubiquitin-Protein Ligase Praja-1 From Homo Sapiens,
Northeast Structural Genomics Consortium (Nesg) Target
Hr4710b
Length = 91
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 42/76 (55%), Gaps = 7/76 (9%)
Query: 221 GTPPAQKEAVEAMPSVKIEET-------LQCSVCLDDFEIGTEAKEMPCKHKFHSQCILP 273
PPA KE+++A+P + + E + C +C ++ G A E+PC H FH C+
Sbjct: 13 ANPPASKESIDALPEILVTEDHGAVGQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSI 72
Query: 274 WLELHSSCPVCRCQLP 289
WL+ +CPVCRC P
Sbjct: 73 WLQKSGTCPVCRCMFP 88
>pdb|1IYM|A Chain A, Ring-H2 Finger Domain Of El5
Length = 55
Score = 56.6 bits (135), Expect = 2e-08, Method: Composition-based stats.
Identities = 22/49 (44%), Positives = 36/49 (73%), Gaps = 1/49 (2%)
Query: 238 IEETLQCSVCLDDFEIGTEAKEMP-CKHKFHSQCILPWLELHSSCPVCR 285
+++ ++C+VCL + E G EA+ +P C H FH++C+ WL HS+CP+CR
Sbjct: 2 MDDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCR 50
>pdb|2EP4|A Chain A, Solution Structure Of Ring Finger From Human Ring Finger
Protein 24
Length = 74
Score = 52.0 bits (123), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 20/41 (48%), Positives = 28/41 (68%)
Query: 244 CSVCLDDFEIGTEAKEMPCKHKFHSQCILPWLELHSSCPVC 284
C+VCL+DF+ E PCKH FH +C++ WLE+ CP+C
Sbjct: 18 CAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKVCPLC 58
>pdb|1X4J|A Chain A, Solution Structure Of Ring Finger In Ring Finger Protein
38
Length = 75
Score = 52.0 bits (123), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 33/47 (70%), Gaps = 1/47 (2%)
Query: 239 EETLQCSVCLDDFEIGTEAKEMPCKHKFHSQCILPWLELHSSCPVCR 285
E+TL C VC+ DFE + +PC H+FH++C+ WL+ + +CP+CR
Sbjct: 22 EQTL-CVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANRTCPICR 67
>pdb|2KIZ|A Chain A, Solution Structure Of Arkadia Ring-H2 Finger Domain
Length = 69
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 28/48 (58%)
Query: 243 QCSVCLDDFEIGTEAKEMPCKHKFHSQCILPWLELHSSCPVCRCQLPA 290
+C++CL E G + + +PC H FH C+ WL + CP+CR + A
Sbjct: 16 KCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDIEA 63
>pdb|4EPO|C Chain C, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|G Chain G, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|H Chain H, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|K Chain K, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|L Chain L, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
Length = 149
Score = 44.7 bits (104), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 36/69 (52%), Gaps = 3/69 (4%)
Query: 225 AQKEAVEAMPSVKIEETLQCSVCLDDFEIGTEAKEMPCKHKFHSQCILPWLELHSSCPVC 284
AQKE V + + +E LQC +C + F EA + C H F S CI W++ CP+C
Sbjct: 48 AQKEEVLSHMNDVLENELQCIICSEYF---IEAVTLNCAHSFCSYCINEWMKRKIECPIC 104
Query: 285 RCQLPADEF 293
R + + +
Sbjct: 105 RKDIKSKTY 113
>pdb|4AYC|B Chain B, Rnf8 Ring Domain Structure
Length = 138
Score = 44.7 bits (104), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 36/69 (52%), Gaps = 3/69 (4%)
Query: 225 AQKEAVEAMPSVKIEETLQCSVCLDDFEIGTEAKEMPCKHKFHSQCILPWLELHSSCPVC 284
AQKE V + + +E LQC +C + F EA + C H F S CI W++ CP+C
Sbjct: 37 AQKEEVLSHMNDVLENELQCIICSEYF---IEAVTLNCAHSFCSYCINEWMKRKIECPIC 93
Query: 285 RCQLPADEF 293
R + + +
Sbjct: 94 RKDIKSKTY 102
>pdb|4AYC|A Chain A, Rnf8 Ring Domain Structure
Length = 138
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 33/61 (54%), Gaps = 3/61 (4%)
Query: 225 AQKEAVEAMPSVKIEETLQCSVCLDDFEIGTEAKEMPCKHKFHSQCILPWLELHSSCPVC 284
AQKE V + + +E LQC +C + F EA + C H F S CI W++ CP+C
Sbjct: 37 AQKEEVLSHMNDVLENELQCIICSEYF---IEAVTLNCAHSFCSYCINEWMKRKIECPIC 93
Query: 285 R 285
R
Sbjct: 94 R 94
>pdb|2ECN|A Chain A, Solution Structure Of The Ring Domain Of The Human Ring
Finger Protein 141
Length = 70
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 4/52 (7%)
Query: 237 KIEETLQCSVCLDDFEIGTEAKEMPCKHKFHSQCILPWLELHSSCPVCRCQL 288
++ + +C +C+D G +PC H F +CI W + H +CP+CR Q+
Sbjct: 11 QLTDEEECCICMD----GRADLILPCAHSFCQKCIDKWSDRHRNCPICRLQM 58
>pdb|2Y43|A Chain A, Rad18 Ubiquitin Ligase Ring Domain Structure
pdb|2Y43|B Chain B, Rad18 Ubiquitin Ligase Ring Domain Structure
Length = 99
Score = 36.2 bits (82), Expect = 0.027, Method: Composition-based stats.
Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Query: 238 IEETLQCSVCLDDFEIGTEAKEMPCKHKFHSQCILPWLELHSSCPVC 284
I++ L+C +C + F I + C H + S CI +L + CP C
Sbjct: 19 IDDLLRCGICFEYFNIAMIIPQ--CSHNYCSLCIRKFLSYKTQCPTC 63
>pdb|2H0D|A Chain A, Structure Of A Bmi-1-Ring1b Polycomb Group Ubiquitin
Ligase Complex
Length = 97
Score = 33.9 bits (76), Expect = 0.15, Method: Composition-based stats.
Identities = 20/56 (35%), Positives = 26/56 (46%), Gaps = 5/56 (8%)
Query: 236 VKIEET---LQCSVCLDDFEIGTEAKEMPCKHKFHSQCILPWLELHSSCPVCRCQL 288
+KI E L C +C F T E C H F CI+ +LE CP+C Q+
Sbjct: 3 IKITELNPHLMCVLCGGYFIDATTIIE--CLHSFCKTCIVRYLETSKYCPICDVQV 56
>pdb|1CHC|A Chain A, Structure Of The C3hc4 Domain By 1h-Nuclear Magnetic
Resonance Spectroscopy; A New Structural Class Of Zinc-
Finger
Length = 68
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Query: 243 QCSVCLDDFEIGTEAKEMPCKHKFHSQCILPWLELHSSCPVCR 285
+C +CL+D + +PC H F CI W+ + +CP+C+
Sbjct: 7 RCPICLED--PSNYSMALPCLHAFCYVCITRWIRQNPTCPLCK 47
>pdb|3NG2|A Chain A, Crystal Structure Of The Rnf4 Ring Domain Dimer
pdb|3NG2|B Chain B, Crystal Structure Of The Rnf4 Ring Domain Dimer
Length = 71
Score = 33.5 bits (75), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 4/59 (6%)
Query: 241 TLQCSVCLDDF-EI---GTEAKEMPCKHKFHSQCILPWLELHSSCPVCRCQLPADEFKP 295
T+ C +C+D + EI G C H F SQC+ L+ ++CP CR ++ + P
Sbjct: 10 TVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRYHP 68
>pdb|2CKL|A Chain A, Ring1b-Bmi1 E3 Catalytic Domain Structure
Length = 108
Score = 33.5 bits (75), Expect = 0.22, Method: Composition-based stats.
Identities = 20/56 (35%), Positives = 26/56 (46%), Gaps = 5/56 (8%)
Query: 236 VKIEET---LQCSVCLDDFEIGTEAKEMPCKHKFHSQCILPWLELHSSCPVCRCQL 288
+KI E L C +C F T E C H F CI+ +LE CP+C Q+
Sbjct: 7 IKITELNPHLMCVLCGGYFIDATTIIE--CLHSFCKTCIVRYLETSKYCPICDVQV 60
>pdb|3RPG|B Chain B, Bmi1RING1B-Ubch5c Complex Structure
Length = 117
Score = 33.5 bits (75), Expect = 0.22, Method: Composition-based stats.
Identities = 20/56 (35%), Positives = 26/56 (46%), Gaps = 5/56 (8%)
Query: 236 VKIEET---LQCSVCLDDFEIGTEAKEMPCKHKFHSQCILPWLELHSSCPVCRCQL 288
+KI E L C +C F T E C H F CI+ +LE CP+C Q+
Sbjct: 7 IKITELNPHLMCVLCGGYFIDATTIIE--CLHSFCKTCIVRYLETSKYCPICDVQV 60
>pdb|2ECW|A Chain A, Solution Structure Of The Zinc Finger, C3hc4 Type (Ring
Finger) Domain Tripartite Motif Protein 30
Length = 85
Score = 33.1 bits (74), Expect = 0.26, Method: Composition-based stats.
Identities = 21/64 (32%), Positives = 27/64 (42%), Gaps = 9/64 (14%)
Query: 238 IEETLQCSVCLDDFEIGTEAKEMPCKHKFHSQCILPWLELH------SSCPVCRCQLPAD 291
I+E + C +CL E+ E C H F CI E + +CPVCR P
Sbjct: 16 IKEEVTCPICL---ELLKEPVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFG 72
Query: 292 EFKP 295
KP
Sbjct: 73 NLKP 76
>pdb|4AP4|A Chain A, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex
Length = 133
Score = 33.1 bits (74), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 4/59 (6%)
Query: 241 TLQCSVCLDDF-EI---GTEAKEMPCKHKFHSQCILPWLELHSSCPVCRCQLPADEFKP 295
T+ C +C+D + EI G C H F SQC+ L+ ++CP CR ++ + P
Sbjct: 7 TVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRYHP 65
Score = 33.1 bits (74), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 4/59 (6%)
Query: 241 TLQCSVCLDDF-EI---GTEAKEMPCKHKFHSQCILPWLELHSSCPVCRCQLPADEFKP 295
T+ C +C+D + EI G C H F SQC+ L+ ++CP CR ++ + P
Sbjct: 72 TVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRYHP 130
>pdb|3VGO|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
pdb|3VGO|B Chain B, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
pdb|3VGO|C Chain C, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
Length = 394
Score = 32.0 bits (71), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 4/50 (8%)
Query: 244 CSVCLDDFEIGTEAKEMPCKHKFHSQCILPWLELHSS-CPVCRCQLPADE 292
C +C ++ + K PC H + C+ W E CP CRC++ E
Sbjct: 341 CKICAEN---DKDVKIEPCGHLMCTSCLTAWQESDGQGCPFCRCEIKGTE 387
>pdb|4A4C|A Chain A, Structure Of Phosphotyr371-C-Cbl-Ubch5b-Zap-70 Complex
Length = 391
Score = 32.0 bits (71), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 4/50 (8%)
Query: 244 CSVCLDDFEIGTEAKEMPCKHKFHSQCILPWLELHSS-CPVCRCQLPADE 292
C +C ++ + K PC H + C+ W E CP CRC++ E
Sbjct: 337 CKICAEN---DKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGTE 383
>pdb|4A4B|A Chain A, Structure Of Modified Phosphotyr371-C-Cbl-Ubch5b-Zap-70
Complex
Length = 391
Score = 32.0 bits (71), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 4/50 (8%)
Query: 244 CSVCLDDFEIGTEAKEMPCKHKFHSQCILPWLELHSS-CPVCRCQLPADE 292
C +C ++ + K PC H + C+ W E CP CRC++ E
Sbjct: 337 CKICAEN---DKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGTE 383
>pdb|1FBV|A Chain A, Structure Of A Cbl-Ubch7 Complex: Ring Domain Function In
Ubiquitin-Protein Ligases
Length = 388
Score = 32.0 bits (71), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 4/50 (8%)
Query: 244 CSVCLDDFEIGTEAKEMPCKHKFHSQCILPWLELHSS-CPVCRCQLPADE 292
C +C ++ + K PC H + C+ W E CP CRC++ E
Sbjct: 335 CKICAEN---DKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGTE 381
>pdb|2Y1M|A Chain A, Structure Of Native C-Cbl
pdb|2Y1M|B Chain B, Structure Of Native C-Cbl
pdb|2Y1M|C Chain C, Structure Of Native C-Cbl
pdb|2Y1M|D Chain D, Structure Of Native C-Cbl
pdb|2Y1M|E Chain E, Structure Of Native C-Cbl
pdb|2Y1M|F Chain F, Structure Of Native C-Cbl
pdb|2Y1N|A Chain A, Structure Of C-Cbl-Zap-70 Peptide Complex
pdb|2Y1N|C Chain C, Structure Of C-Cbl-Zap-70 Peptide Complex
Length = 389
Score = 32.0 bits (71), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 4/50 (8%)
Query: 244 CSVCLDDFEIGTEAKEMPCKHKFHSQCILPWLELHSS-CPVCRCQLPADE 292
C +C ++ + K PC H + C+ W E CP CRC++ E
Sbjct: 335 CKICAEN---DKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGTE 381
>pdb|2EA6|A Chain A, Solution Structure Of The Ring Domain Of The Human Ring
Finger Protein 4
Length = 69
Score = 31.6 bits (70), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 4/49 (8%)
Query: 241 TLQCSVCLDDF-EI---GTEAKEMPCKHKFHSQCILPWLELHSSCPVCR 285
T+ C +C+D + EI G C H F SQC+ L+ ++CP CR
Sbjct: 15 TVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCR 63
>pdb|2XEU|A Chain A, Ring Domain
Length = 64
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 4/58 (6%)
Query: 242 LQCSVCLDDF-EI---GTEAKEMPCKHKFHSQCILPWLELHSSCPVCRCQLPADEFKP 295
+ C +C+D + EI G C H F SQC+ L+ ++CP CR ++ + P
Sbjct: 4 VSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRYHP 61
>pdb|1U6G|B Chain B, Crystal Structure Of The Cand1-Cul1-Roc1 Complex
pdb|2HYE|D Chain D, Crystal Structure Of The Ddb1-cul4a-rbx1-sv5v Complex
Length = 108
Score = 30.0 bits (66), Expect = 2.1, Method: Composition-based stats.
Identities = 10/22 (45%), Positives = 12/22 (54%)
Query: 262 CKHKFHSQCILPWLELHSSCPV 283
C H FH CI WL+ CP+
Sbjct: 75 CNHAFHFHCISRWLKTRQVCPL 96
>pdb|1LDJ|B Chain B, Structure Of The Cul1-rbx1-skp1-f Boxskp2 Scf Ubiquitin
Ligase Complex
pdb|1LDK|C Chain C, Structure Of The Cul1-Rbx1-Skp1-F Boxskp2 Scf Ubiquitin
Ligase Complex
Length = 90
Score = 30.0 bits (66), Expect = 2.3, Method: Composition-based stats.
Identities = 10/22 (45%), Positives = 12/22 (54%)
Query: 262 CKHKFHSQCILPWLELHSSCPV 283
C H FH CI WL+ CP+
Sbjct: 57 CNHAFHFHCISRWLKTRQVCPL 78
>pdb|4A0K|B Chain B, Structure Of Ddb1-Ddb2-Cul4a-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 117
Score = 30.0 bits (66), Expect = 2.3, Method: Composition-based stats.
Identities = 10/22 (45%), Positives = 12/22 (54%)
Query: 262 CKHKFHSQCILPWLELHSSCPV 283
C H FH CI WL+ CP+
Sbjct: 84 CNHAFHFHCISRWLKTRQVCPL 105
>pdb|4A0C|D Chain D, Structure Of The Cand1-Cul4b-Rbx1 Complex
pdb|4A0C|F Chain F, Structure Of The Cand1-Cul4b-Rbx1 Complex
pdb|4A0L|F Chain F, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|I Chain I, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 98
Score = 30.0 bits (66), Expect = 2.3, Method: Composition-based stats.
Identities = 10/22 (45%), Positives = 12/22 (54%)
Query: 262 CKHKFHSQCILPWLELHSSCPV 283
C H FH CI WL+ CP+
Sbjct: 65 CNHAFHFHCISRWLKTRQVCPL 86
>pdb|3DPL|R Chain R, Structural Insights Into Nedd8 Activation Of Cullin-Ring
Ligases: Conformational Control Of Conjugation.
pdb|3RTR|B Chain B, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|3RTR|D Chain D, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|3RTR|F Chain F, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|3RTR|H Chain H, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|4F52|B Chain B, Structure Of A Glomulin-Rbx1-Cul1 Complex
pdb|4F52|D Chain D, Structure Of A Glomulin-Rbx1-Cul1 Complex
Length = 106
Score = 30.0 bits (66), Expect = 2.5, Method: Composition-based stats.
Identities = 10/22 (45%), Positives = 12/22 (54%)
Query: 262 CKHKFHSQCILPWLELHSSCPV 283
C H FH CI WL+ CP+
Sbjct: 73 CNHAFHFHCISRWLKTRQVCPL 94
>pdb|3DQV|R Chain R, Structural Insights Into Nedd8 Activation Of Cullin-Ring
Ligases: Conformational Control Of Conjugation
pdb|3DQV|Y Chain Y, Structural Insights Into Nedd8 Activation Of Cullin-Ring
Ligases: Conformational Control Of Conjugation
Length = 106
Score = 29.6 bits (65), Expect = 2.6, Method: Composition-based stats.
Identities = 10/22 (45%), Positives = 12/22 (54%)
Query: 262 CKHKFHSQCILPWLELHSSCPV 283
C H FH CI WL+ CP+
Sbjct: 73 CNHAFHFHCISRWLKTRQVCPL 94
>pdb|2LGV|A Chain A, Rbx1
Length = 100
Score = 29.6 bits (65), Expect = 3.2, Method: Composition-based stats.
Identities = 10/22 (45%), Positives = 12/22 (54%)
Query: 262 CKHKFHSQCILPWLELHSSCPV 283
C H FH CI WL+ CP+
Sbjct: 67 CNHAFHFHCISRWLKTRQVCPL 88
>pdb|2D8T|A Chain A, Solution Structure Of The Ring Domain Of The Human Ring
Finger Protein 146
Length = 71
Score = 28.9 bits (63), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 6/58 (10%)
Query: 234 PSVKIEETLQCSVCLDDFEIGTEAKEMPCKHKFHSQCILPWLELHSSCPVCRCQLPAD 291
PS+ + E C++CL + +PCKH F C+ L C +CR ++P D
Sbjct: 11 PSLTVPE---CAICL---QTCVHPVSLPCKHVFCYLCVKGASWLGKRCALCRQEIPED 62
>pdb|2ECV|A Chain A, Solution Structure Of The Zinc Finger, C3hc4 Type (Ring
Finger) Domain Of Tripartite Motif-Containing Protein 5
Length = 85
Score = 28.9 bits (63), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 9/66 (13%)
Query: 236 VKIEETLQCSVCLDDFEIGTEAKEMPCKHKFHSQCILP-----WLEL-HSSCPVCRCQLP 289
V ++E + C +CL E+ T+ + C H F C+ L+ SSCPVCR
Sbjct: 14 VNVKEEVTCPICL---ELLTQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQ 70
Query: 290 ADEFKP 295
+ +P
Sbjct: 71 PENIRP 76
>pdb|2K4D|A Chain A, E2-C-Cbl Recognition Is Necessary But Not Sufficient For
Ubiquitination Activity
Length = 83
Score = 28.9 bits (63), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 4/50 (8%)
Query: 244 CSVCLDDFEIGTEAKEMPCKHKFHSQCILPWLELHSS-CPVCRCQLPADE 292
C +C ++ + K PC H + C+ W E CP CRC++ E
Sbjct: 27 CKICAEN---DKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGTE 73
>pdb|2LDR|A Chain A, Solution Structure Of Helix-Ring Domain Of Cbl-B In The
Tyr363 Phosphorylated Form
Length = 82
Score = 28.9 bits (63), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 4/50 (8%)
Query: 244 CSVCLDDFEIGTEAKEMPCKHKFHSQCILPWLELHS-SCPVCRCQLPADE 292
C +C ++ + K PC H + C+ W E CP CRC++ E
Sbjct: 29 CKICAEN---DKDVKIEPCGHLMCTSCLTAWQESDGQGCPFCRCEIKGTE 75
>pdb|4A49|A Chain A, Structure Of Phosphotyr371-C-Cbl-Ubch5b Complex
Length = 84
Score = 28.5 bits (62), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 4/50 (8%)
Query: 244 CSVCLDDFEIGTEAKEMPCKHKFHSQCILPWLELHSS-CPVCRCQLPADE 292
C +C ++ + K PC H + C+ W E CP CRC++ E
Sbjct: 30 CKICAEN---DKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGTE 76
>pdb|2ECJ|A Chain A, Solution Structure Of The Ring Domain Of The Human
Tripartite Motif-Containing Protein 39
Length = 58
Score = 28.5 bits (62), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 8/56 (14%)
Query: 232 AMPSVKIEETLQCSVCLDDFEIGTEAKEMPCKHKFHSQCILPW---LELHSSCPVC 284
A+ ++++E + CSVCL+ + E + C H F CI W LE CPVC
Sbjct: 8 ALENLQVEAS--CSVCLEYLK---EPVIIECGHNFCKACITRWWEDLERDFPCPVC 58
>pdb|2ECM|A Chain A, Solution Structure Of The Ring Domain Of The Ring Finger
And Chy Zinc Finger Domain-Containing Protein 1 From Mus
Musculus
Length = 55
Score = 28.5 bits (62), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Query: 244 CSVCLDDFEIG-TEAKEMPCKHKFHSQCILPWLELHSSCPVC 284
C +CL+D A +PC H H C L+ CP+C
Sbjct: 8 CPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLC 49
>pdb|2JRJ|A Chain A, Solution Structure Of The Human Pirh2 Ring-H2 Domain.
Northeast Structural Genomics Consortium Target Ht2b
Length = 52
Score = 27.7 bits (60), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Query: 244 CSVCLDDFEIG-TEAKEMPCKHKFHSQCILPWLELHSSCPVC 284
C +CL+D A +PC H H C L+ CP+C
Sbjct: 8 CPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLC 49
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.426
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,470,199
Number of Sequences: 62578
Number of extensions: 379079
Number of successful extensions: 1075
Number of sequences better than 100.0: 48
Number of HSP's better than 100.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 1018
Number of HSP's gapped (non-prelim): 63
length of query: 375
length of database: 14,973,337
effective HSP length: 100
effective length of query: 275
effective length of database: 8,715,537
effective search space: 2396772675
effective search space used: 2396772675
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)