BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017252
(375 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P0CH30|RING1_GOSHI E3 ubiquitin-protein ligase RING1 OS=Gossypium hirsutum GN=RING1
PE=2 SV=1
Length = 338
Score = 167 bits (422), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 84/158 (53%), Positives = 105/158 (66%), Gaps = 15/158 (9%)
Query: 194 GSLGDYFVGPGLDLLLQHLAENDPNRYGTPPAQKEAVEAMPSVKI------EETLQCSVC 247
++GDYF+GPGL+ L+Q LAENDPNRYGTPPA K A+EA+P V I E QC+VC
Sbjct: 168 ANIGDYFIGPGLEQLIQQLAENDPNRYGTPPASKSAIEALPLVNITKSNLNSEFNQCAVC 227
Query: 248 LDDFEIGTEAKEMPCKHKFHSQCILPWLELHSSCPVCRCQLPADEFKPESERSRNSSNHQ 307
+DDFE GTEAK+MPCKH +H C+LPWLELH+SCPVCR +LP D+ P+ ER
Sbjct: 228 MDDFEEGTEAKQMPCKHLYHKDCLLPWLELHNSCPVCRHELPTDD--PDYER------RV 279
Query: 308 REHEHHSSDHGTHASSEEGDGEGRN-ESGSRFSIPWPF 344
R + S + S + DG+ R E R S+PWPF
Sbjct: 280 RGAQGTSGGNDGDNSGQRSDGDNRTVERSFRISLPWPF 317
>sp|Q8LPN7|RNG1L_ARATH E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis thaliana
GN=At3g19950 PE=2 SV=1
Length = 328
Score = 156 bits (395), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 70/131 (53%), Positives = 94/131 (71%), Gaps = 10/131 (7%)
Query: 172 QTIIVQGGSYDGQHQNHNHTP----IGSLGDYFVGPGLDLLLQHLAENDPNRYGTPPAQK 227
QT+ G ++ +NH P G+ GDYF GPGL+ L+Q LAENDPNRYGTPPA K
Sbjct: 134 QTLRSSGTHFEFVIENHPSDPGNRMPGNFGDYFFGPGLEQLIQQLAENDPNRYGTPPASK 193
Query: 228 EAVEAMPSVKIEETL------QCSVCLDDFEIGTEAKEMPCKHKFHSQCILPWLELHSSC 281
A++A+P+VK+ + + QC+VC+D+FE G++ K+MPCKH FH C+LPWLELH+SC
Sbjct: 194 SAIDALPTVKVTKDMLKSEMNQCAVCMDEFEDGSDVKQMPCKHVFHQDCLLPWLELHNSC 253
Query: 282 PVCRCQLPADE 292
PVCR +LP D+
Sbjct: 254 PVCRFELPTDD 264
>sp|Q0II22|RN126_BOVIN RING finger protein 126 OS=Bos taurus GN=RNF126 PE=2 SV=1
Length = 313
Score = 100 bits (249), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 90/299 (30%), Positives = 129/299 (43%), Gaps = 51/299 (17%)
Query: 9 RYWCHMCSQIVDPIMEVEIKCPFCQSGFVEEMGSGSNNNNHQVPDSEFGSDRALSLWAPI 68
RY+CH CS + P + I CP C+SGF+EE+ + + + S +D++
Sbjct: 10 RYFCHCCSVEIVPRLPDYI-CPRCESGFIEELPEETRSAENGSAPSTASADQS------- 61
Query: 69 LLGMMGNQRPHGRRFRRTDYEEDDNDDENHDEYEGELESIITRRRRRNSAAILQLLQGLR 128
R+ +E D + G I +S I G +
Sbjct: 62 ---------------RQQPFENVDQPLFTLPQGYGHFAFGIFD----DSFEIPTFPPGAQ 102
Query: 129 AGLQSESEDNDNDRERD---RDRGDRDRDRDRESER------ERVILINPFNQTIIVQGG 179
A +S D ++ RER+ R R + R R + R E V + Q + V G
Sbjct: 103 A---DDSRDPESRREREQHSRHRYGARQPRARLTARRATGRHEGVPTLEGIIQQL-VNGI 158
Query: 180 SYDGQHQNHNHTPIGSL----GDYFVGP-GLDLLLQHLAENDPNRYGTPPAQKEAVEAMP 234
N P G L DY G GLD ++ L N G PPA KE ++A+P
Sbjct: 159 ITPATIPNLGLGPWGVLHSNPMDYAWGANGLDAIITQLL-NQFENTGPPPADKEKIQALP 217
Query: 235 SVKIEET-----LQCSVCLDDFEIGTEAKEMPCKHKFHSQCILPWLELHSSCPVCRCQL 288
+V + E L+C VC DD+ +G +++PC H FH CI+PWLE H SCPVCR L
Sbjct: 218 TVPVTEEHVGSGLECPVCKDDYGLGEHVRQLPCNHLFHDGCIVPWLEQHDSCPVCRKSL 276
>sp|Q6IRP0|R126B_XENLA RING finger protein 126-B OS=Xenopus laevis GN=rnf126-b PE=2 SV=1
Length = 312
Score = 98.6 bits (244), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 84/305 (27%), Positives = 124/305 (40%), Gaps = 63/305 (20%)
Query: 7 ASRYWCHMCSQIVDPIMEVEIKCPFCQSGFVEEMGSGSNNNNHQVPDSEFGSDRALSLWA 66
A RY+CH C+ + P + E CP C SGF+EE+
Sbjct: 8 AGRYFCHSCTAEITPRLP-EYTCPRCDSGFIEEL-------------------------- 40
Query: 67 PILLGMMGNQRPHGRRFRRTDYEEDDNDDENHDEYEGELESIITRRRRRNSAAILQLLQG 126
P R ++ + D+N +E + T +G
Sbjct: 41 -----------PETSRNSESNSSNNSGTDQNRPSFENIESAQFTLPSGYGQVTFGIFNEG 89
Query: 127 L------RAGLQSESEDNDNDRE-RDRDRGDRDRDRDRESER------ERVILINPFNQT 173
L +G E+ D ++ RE + R R + R R S R E V + Q
Sbjct: 90 LDFPMFGTSGPVEETRDGESRREHQSRQRYGARQPRARMSTRRGAGRNEGVPTLEGIIQQ 149
Query: 174 IIVQGGSYDGQHQNHNHTPIGSL----GDYFVGP-GLDLLLQHLAENDPNRYGTPPAQKE 228
+ V G N P G L DY G GLD ++ L N G PPA +
Sbjct: 150 L-VNGIIAPTAMSNLGVGPWGVLHSNPMDYAWGANGLDTIITQLL-NQFENTGPPPADTD 207
Query: 229 AVEAMPSVKIEET-----LQCSVCLDDFEIGTEAKEMPCKHKFHSQCILPWLELHSSCPV 283
++A+P+++I E L+C VC +D+ +G +++PC H FH+ CI+PWLE H +CPV
Sbjct: 208 KIQALPTIQITEEHVGFGLECPVCKEDYTVGESVRQLPCNHLFHNDCIIPWLEQHDTCPV 267
Query: 284 CRCQL 288
CR L
Sbjct: 268 CRKSL 272
>sp|Q6DIP3|RN126_XENTR RING finger protein 126 OS=Xenopus tropicalis GN=rnf126 PE=2 SV=1
Length = 311
Score = 98.2 bits (243), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 85/305 (27%), Positives = 124/305 (40%), Gaps = 64/305 (20%)
Query: 7 ASRYWCHMCSQIVDPIMEVEIKCPFCQSGFVEEMGSGSNNNNHQVPDSEFGSDRALSLWA 66
A RY+CH C+ + P + E CP C SGF+EE+ P++
Sbjct: 8 AGRYFCHSCTAEIIPRLP-EYTCPRCDSGFIEEL-----------PET------------ 43
Query: 67 PILLGMMGNQRPHGRRFRRTDYEEDDNDDENHDEYEGELESIITRRRRRNSAAILQLLQG 126
R + + D+N +E + T +G
Sbjct: 44 ---------------RNSENNSSNNSGTDQNRPSFENLESAQFTLPSGYGQVTFGIFNEG 88
Query: 127 L------RAGLQSESEDNDNDRE-RDRDRGDRDRDRDRESER------ERVILINPFNQT 173
L +G E D ++ RE + R R + R R S R E V + Q
Sbjct: 89 LDFPIFGTSGPVEEPRDGESRREHQSRQRYGARQPRARLSTRRAAGRNEGVPTLEGIIQQ 148
Query: 174 IIVQGGSYDGQHQNHNHTPIGSL----GDYFVGP-GLDLLLQHLAENDPNRYGTPPAQKE 228
+ V G N P G L DY G GLD ++ L N G PPA E
Sbjct: 149 L-VNGIIAPTAMSNLGVGPWGVLHSNPMDYAWGANGLDTIITQLL-NQFENTGPPPADTE 206
Query: 229 AVEAMPSVKIEET-----LQCSVCLDDFEIGTEAKEMPCKHKFHSQCILPWLELHSSCPV 283
++A+P+++I E L+C VC +D+ +G +++PC H FH+ CI+PWLE H +CPV
Sbjct: 207 KIQALPTIQITEEHVGSGLECPVCKEDYTVGESVRQLPCNHLFHNDCIIPWLEQHDTCPV 266
Query: 284 CRCQL 288
CR L
Sbjct: 267 CRKSL 271
>sp|Q9D0C1|RN115_MOUSE E3 ubiquitin-protein ligase RNF115 OS=Mus musculus GN=Rnf115 PE=1
SV=1
Length = 305
Score = 98.2 bits (243), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 90/340 (26%), Positives = 134/340 (39%), Gaps = 83/340 (24%)
Query: 9 RYWCHMCSQIVDPIMEVEIKCPFCQSGFVEEMGSGSNNNNHQVPDSEFGSDRALSLWAPI 68
R++CH C V+P + E CP C SGF+EE+ DS F
Sbjct: 19 RFFCHFCKGEVNPKLP-EYICPRCDSGFIEEVTD----------DSSF------------ 55
Query: 69 LLGMMGNQRPHGRRFRRTDYEEDDNDDENHDEYEGELESIITRRRRRNSAAILQLLQGLR 128
LG G+ RTD + E D + + LQ R
Sbjct: 56 -LGGGGS---------RTDNSTATHFAELWDHLDHTM-----------------FLQDFR 88
Query: 129 AGLQSESEDNDND-----------------------RERDRDRGDRDRDRDRESERERVI 165
L S D DN R R RG DR E
Sbjct: 89 PFLSSNPLDQDNRANERGHQTHTDFWGPSRPPRLPMTRRYRSRGSTRPDRSPAIEGIIQQ 148
Query: 166 LINPFNQTIIVQGGSYDGQHQNHNHTPIGSLGDYFVG-PGLDLLLQHLAENDPNRYGTPP 224
+ F + G + H+ + GDY G GLD ++ L N G PP
Sbjct: 149 IFAGFFANSAIPGSPHPFSWSGMLHS---NPGDYAWGQTGLDAIVTQLLGQLENT-GPPP 204
Query: 225 AQKEAVEAMPSVKIEET-----LQCSVCLDDFEIGTEAKEMPCKHKFHSQCILPWLELHS 279
A KE + ++P+V + + L+C VC +D+ + + +++PC H FHS CI+PWLELH
Sbjct: 205 ADKEKITSLPTVTVTQEQVNTGLECPVCKEDYTVEEKVRQLPCNHFFHSSCIVPWLELHD 264
Query: 280 SCPVCRCQLPADEFKPESERSRNSSNHQREHEHHSSDHGT 319
+CPVCR L ++ +++ S S++++ ++ D T
Sbjct: 265 TCPVCRKSLNGEDSTRQTQSSEASASNRFSNDSQLHDRWT 304
>sp|Q7T0Q3|R126A_XENLA RING finger protein 126-A OS=Xenopus laevis GN=rnf126-a PE=2 SV=1
Length = 312
Score = 98.2 bits (243), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 85/305 (27%), Positives = 123/305 (40%), Gaps = 63/305 (20%)
Query: 7 ASRYWCHMCSQIVDPIMEVEIKCPFCQSGFVEEMGSGSNNNNHQVPDSEFGSDRALSLWA 66
A RY+CH C+ + P + E CP C SGF+EE+
Sbjct: 8 AGRYFCHSCTAEITPRLP-EYTCPRCDSGFIEEL-------------------------- 40
Query: 67 PILLGMMGNQRPHGRRFRRTDYEEDDNDDENHDEYEGELESIITRRRRRNSAAILQLLQG 126
P R + + D+N +E + T +G
Sbjct: 41 -----------PETSRNSENNSSNNSRTDQNRPSFENLESAQFTLPSGYGQVTFGIFNEG 89
Query: 127 L------RAGLQSESEDNDNDRE-RDRDRGDRDRDRDRESER------ERVILINPFNQT 173
L +G E+ D ++ RE + R R + R R S R E V + Q
Sbjct: 90 LDFPIFGTSGPVEETRDGESRREHQSRQRYGARQPRARLSTRRAAGRNEGVPTLEGIIQQ 149
Query: 174 IIVQGGSYDGQHQNHNHTPIGSL----GDYFVGP-GLDLLLQHLAENDPNRYGTPPAQKE 228
+ V G N P G L DY G GLD ++ L N G PPA E
Sbjct: 150 L-VNGIIAPTAMSNLGVGPWGVLHSNPMDYAWGANGLDTIITQLL-NQFENTGPPPADNE 207
Query: 229 AVEAMPSVKIEET-----LQCSVCLDDFEIGTEAKEMPCKHKFHSQCILPWLELHSSCPV 283
++A+P+++I E L+C VC +D+ +G +++PC H FH+ CI+PWLE H +CPV
Sbjct: 208 KIQALPTIQITEEHVGSGLECPVCKEDYTVGECVRQLPCNHLFHNDCIIPWLEQHDTCPV 267
Query: 284 CRCQL 288
CR L
Sbjct: 268 CRKSL 272
>sp|Q9BV68|RN126_HUMAN RING finger protein 126 OS=Homo sapiens GN=RNF126 PE=1 SV=1
Length = 326
Score = 97.8 bits (242), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 89/304 (29%), Positives = 127/304 (41%), Gaps = 64/304 (21%)
Query: 9 RYWCHMCSQIVDPIMEVEIKCPFCQSGFVEEMGSGSNNNNHQVPDSEFGSDRALSLWAPI 68
RY+CH CS + P + I CP C+SGF+EE+ + + + S +D++
Sbjct: 10 RYFCHCCSVEIVPRLPDYI-CPRCESGFIEELPEETRSTENGSAPSTAPTDQS------- 61
Query: 69 LLGMMGNQRPHGRRFRRTDYEEDDNDDENHDEYEGELESIITRRRRRNSAAILQLLQGLR 128
R E D + G+ I +S I G +
Sbjct: 62 ----------------RPPLEHVDQHLFTLPQGYGQFAFGIFD----DSFEIPTFPPGAQ 101
Query: 129 AGLQSESEDNDNDRERD---RDRGDRDRDRDRESER------------ERVI--LIN-PF 170
A + D ++ RERD R R + R R + R E +I L+N
Sbjct: 102 A---DDGRDPESRRERDHPSRHRYGARQPRARLTTRRATGRHEGVPTLEGIIQQLVNGII 158
Query: 171 NQTIIVQGGSYDGQHQNHNHTPIGSLGDYFVGP-GLDLLLQHLAENDPNRYGTPPAQKEA 229
I G + H N DY G GLD ++ L N G PPA KE
Sbjct: 159 TPATIPSLGPWGVLHSNPM--------DYAWGANGLDAIITQLL-NQFENTGPPPADKEK 209
Query: 230 VEAMPSVKIEET-----LQCSVCLDDFEIGTEAKEMPCKHKFHSQCILPWLELHSSCPVC 284
++A+P+V + E L+C VC DD+ +G +++PC H FH CI+PWLE H SCPVC
Sbjct: 210 IQALPTVPVTEEHVGSGLECPVCKDDYALGERVRQLPCNHLFHDGCIVPWLEQHDSCPVC 269
Query: 285 RCQL 288
R L
Sbjct: 270 RKSL 273
>sp|Q9Y4L5|RN115_HUMAN E3 ubiquitin-protein ligase RNF115 OS=Homo sapiens GN=RNF115 PE=1
SV=2
Length = 304
Score = 90.5 bits (223), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 47/129 (36%), Positives = 75/129 (58%), Gaps = 7/129 (5%)
Query: 197 GDYFVG-PGLDLLLQHLAENDPNRYGTPPAQKEAVEAMPSVKIEET-----LQCSVCLDD 250
GDY G GLD ++ L N G PPA KE + ++P+V + + L+C VC +D
Sbjct: 176 GDYAWGQTGLDAIVTQLLGQLENT-GPPPADKEKITSLPTVTVTQEQVDMGLECPVCKED 234
Query: 251 FEIGTEAKEMPCKHKFHSQCILPWLELHSSCPVCRCQLPADEFKPESERSRNSSNHQREH 310
+ + E +++PC H FHS CI+PWLELH +CPVCR L ++ +S+ + S++++ +
Sbjct: 235 YTVEEEVRQLPCNHFFHSSCIVPWLELHDTCPVCRKSLNGEDSTRQSQSTEASASNRFSN 294
Query: 311 EHHSSDHGT 319
+ D T
Sbjct: 295 DSQLHDRWT 303
Score = 36.2 bits (82), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Query: 9 RYWCHMCSQIVDPIMEVEIKCPFCQSGFVEEM 40
R++CH C V P + E CP C+SGF+EE+
Sbjct: 19 RFFCHFCKGEVSPKLP-EYICPRCESGFIEEV 49
>sp|Q91YL2|RN126_MOUSE RING finger protein 126 OS=Mus musculus GN=Rnf126 PE=1 SV=1
Length = 313
Score = 89.0 bits (219), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 43/97 (44%), Positives = 58/97 (59%), Gaps = 7/97 (7%)
Query: 198 DYFVGP-GLDLLLQHLAENDPNRYGTPPAQKEAVEAMPSVKIEET-----LQCSVCLDDF 251
DY G GLD ++ L N G PPA KE ++A+P+V + E L+C VC +D+
Sbjct: 180 DYAWGANGLDTIITQLL-NQFENTGPPPADKEKIQALPTVPVTEEHVGSGLECPVCKEDY 238
Query: 252 EIGTEAKEMPCKHKFHSQCILPWLELHSSCPVCRCQL 288
+G +++PC H FH CI+PWLE H SCPVCR L
Sbjct: 239 ALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSL 275
Score = 37.4 bits (85), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Query: 9 RYWCHMCSQIVDPIMEVEIKCPFCQSGFVEEMGSGSNNN 47
RY+CH CS + P + I CP C+SGF+EE+ + N
Sbjct: 10 RYFCHCCSVEIVPRLPDYI-CPRCESGFIEELPEETRNT 47
>sp|Q7ZW78|RN181_DANRE E3 ubiquitin-protein ligase RNF181 OS=Danio rerio GN=rnf181 PE=2
SV=2
Length = 156
Score = 87.4 bits (215), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 50/117 (42%), Positives = 68/117 (58%), Gaps = 15/117 (12%)
Query: 204 GLDLLLQHLAENDPNRYGTPPAQKEAVEAMPSVKI-----EETLQCSVCLDDFEIGTEAK 258
GLD+ +D ++ PPA K V+++P V I ++ ++C VCL +FE +
Sbjct: 34 GLDIDSGSFDLSDWDQRLPPPAAKAVVQSLPVVIISPEQADKGVKCPVCLLEFEEQESVR 93
Query: 259 EMPCKHKFHSQCILPWLELHSSCPVCRCQLPAD-----EFKPESERSRNSSNHQREH 310
EMPCKH FH+ CILPWL +SCP+CR +LP D EFK + ER R QREH
Sbjct: 94 EMPCKHLFHTGCILPWLNKTNSCPLCRLELPTDNADYEEFKKDKERRR-----QREH 145
>sp|Q6GPV5|RN181_XENLA E3 ubiquitin-protein ligase RNF181 OS=Xenopus laevis GN=rnf181 PE=2
SV=1
Length = 156
Score = 85.5 bits (210), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 43/112 (38%), Positives = 66/112 (58%), Gaps = 5/112 (4%)
Query: 204 GLDLLLQHLAENDPNRYGTPPAQKEAVEAMPSVKI-----EETLQCSVCLDDFEIGTEAK 258
G+D+ L + + ++ PPA K+ VE++P V + + L+C VCL +FE G +
Sbjct: 34 GMDIDLGAVDFTEWDQRLPPPASKKVVESLPKVTVTPEQADAALKCPVCLLEFEEGETVR 93
Query: 259 EMPCKHKFHSQCILPWLELHSSCPVCRCQLPADEFKPESERSRNSSNHQREH 310
++PC+H FHS CILPWL +SCP+CR +LP D E + + Q+EH
Sbjct: 94 QLPCEHLFHSACILPWLGKTNSCPLCRHELPTDSPDYEEFKQEKARRQQKEH 145
>sp|Q8RXD3|AIP2_ARATH E3 ubiquitin-protein ligase AIP2 OS=Arabidopsis thaliana GN=AIP2
PE=1 SV=1
Length = 310
Score = 84.7 bits (208), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 49/133 (36%), Positives = 74/133 (55%), Gaps = 17/133 (12%)
Query: 175 IVQGGSYDGQHQNHNHTPIGSLGDYF--VGPGLDLLLQHLAEND-PNRYGTPPAQKEAVE 231
IV G S +G +N IG + + GLD+++ + ++ P R PPA KE VE
Sbjct: 156 IVGGESSNGPTENT----IGETANLMQELINGLDMIIPDILDDGGPPR--APPASKEVVE 209
Query: 232 AMPSVKIEETL--------QCSVCLDDFEIGTEAKEMPCKHKFHSQCILPWLELHSSCPV 283
+P + E L +C +C ++ IG + +E+PCKH FH C+ PWL+ H+SCP+
Sbjct: 210 KLPVIIFTEELLKKFGAEAECCICKENLVIGDKMQELPCKHTFHPPCLKPWLDEHNSCPI 269
Query: 284 CRCQLPADEFKPE 296
CR +LP D+ K E
Sbjct: 270 CRHELPTDDQKYE 282
>sp|Q5M974|RN181_XENTR E3 ubiquitin-protein ligase RNF181 OS=Xenopus tropicalis GN=rnf181
PE=2 SV=1
Length = 156
Score = 83.6 bits (205), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 44/112 (39%), Positives = 66/112 (58%), Gaps = 5/112 (4%)
Query: 204 GLDLLLQHLAENDPNRYGTPPAQKEAVEAMPSVKI-----EETLQCSVCLDDFEIGTEAK 258
G+D+ L L + ++ PPA K+ VE++P V + + L+C VCL +FE G +
Sbjct: 34 GMDIDLGALDFTEWDQRLPPPAAKKVVESLPKVTVTPEQADAALKCPVCLLEFEEGETVR 93
Query: 259 EMPCKHKFHSQCILPWLELHSSCPVCRCQLPADEFKPESERSRNSSNHQREH 310
++PC+H FHS CILPWL +SCP+CR +LP D + E + Q+EH
Sbjct: 94 QLPCEHLFHSSCILPWLGKTNSCPLCRHELPTDSPEYEEYKQEKERRQQKEH 145
>sp|Q9SPL2|CIP8_ARATH E3 ubiquitin-protein ligase CIP8 OS=Arabidopsis thaliana GN=CIP8
PE=1 SV=1
Length = 334
Score = 82.4 bits (202), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 47/120 (39%), Positives = 67/120 (55%), Gaps = 10/120 (8%)
Query: 194 GSLGDYFV-GPGLDLLLQHLAENDPNRYG----TPPAQKEAVEAMPSVKI-----EETLQ 243
G+ DY G + LLQ+LAE D G PPA K A+EA+ + ++ E +
Sbjct: 197 GNPADYIDDAAGYEALLQNLAEGDGGGGGGRRGAPPAAKSAIEALETFEVSSSEGEMVMV 256
Query: 244 CSVCLDDFEIGTEAKEMPCKHKFHSQCILPWLELHSSCPVCRCQLPADEFKPESERSRNS 303
C+VC D +G K++PC H +H CI+PWL +SCPVCR QL D+ + E ER + +
Sbjct: 257 CAVCKDGMVMGETGKKLPCGHCYHGDCIVPWLGTRNSCPVCRFQLETDDAEYEEERKKRT 316
>sp|Q9CY62|RN181_MOUSE E3 ubiquitin-protein ligase RNF181 OS=Mus musculus GN=Rnf181 PE=2
SV=1
Length = 165
Score = 82.0 bits (201), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 40/91 (43%), Positives = 52/91 (57%), Gaps = 3/91 (3%)
Query: 223 PPAQKEAVEAMPSVKIEET---LQCSVCLDDFEIGTEAKEMPCKHKFHSQCILPWLELHS 279
PPA K VE++P I L+C VCL +FE EMPC H FHS CILPWL +
Sbjct: 64 PPAAKAVVESLPRTVISSAKADLKCPVCLLEFEAEETVIEMPCHHLFHSNCILPWLSKTN 123
Query: 280 SCPVCRCQLPADEFKPESERSRNSSNHQREH 310
SCP+CR +LP D+ E + + Q++H
Sbjct: 124 SCPLCRHELPTDDDSYEEHKKDKARRQQQQH 154
>sp|Q9C1X4|YKW3_SCHPO Uncharacterized RING finger protein P32A8.03c
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPAP32A8.03c PE=4 SV=1
Length = 513
Score = 80.9 bits (198), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 49/149 (32%), Positives = 79/149 (53%), Gaps = 14/149 (9%)
Query: 194 GSLGDYFVGP-GLDLLLQHLAENDPNRYGTPPAQKEAVEAM-----PSVKIEETLQCSVC 247
G+ GDY G GLD ++ L E PA ++ + M P I+E +C++C
Sbjct: 340 GNPGDYAWGARGLDDIISQLMEQAQGHNAPAPAPEDVIAKMKVQKPPKELIDEEGECTIC 399
Query: 248 LDDFEIGTEAKEMPCKHKFHSQCILPWLELHSSCPVCRCQLPADEFKPESERSRNSSNHQ 307
++ F+I + ++PCKH FH CI PWL ++ +C +CR P D P S++ RN+++
Sbjct: 400 MEMFKINDDVIQLPCKHYFHENCIKPWLRVNGTCAICRA--PVD---PNSQQ-RNNTSTD 453
Query: 308 REHEHHSSDHGTHASSEEGD--GEGRNES 334
+ H+ S+H ++S D RNES
Sbjct: 454 SANGHNPSNHANPSTSTTNDQGATLRNES 482
>sp|Q9P0P0|RN181_HUMAN E3 ubiquitin-protein ligase RNF181 OS=Homo sapiens GN=RNF181 PE=1
SV=1
Length = 153
Score = 79.0 bits (193), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 43/98 (43%), Positives = 56/98 (57%), Gaps = 3/98 (3%)
Query: 216 DPNRYGTPPAQKEAVEAMPSVKI---EETLQCSVCLDDFEIGTEAKEMPCKHKFHSQCIL 272
D + + PPA K VE +P I + L+C VCL +FE A EMPC H FHS CIL
Sbjct: 45 DWDHHLPPPAAKTVVENLPRTVIRGSQAELKCPVCLLEFEEEETAIEMPCHHLFHSSCIL 104
Query: 273 PWLELHSSCPVCRCQLPADEFKPESERSRNSSNHQREH 310
PWL +SCP+CR +LP D+ E R + Q++H
Sbjct: 105 PWLSKTNSCPLCRYELPTDDDTYEEHRRDKARKQQQQH 142
>sp|Q3T0W3|RN181_BOVIN E3 ubiquitin-protein ligase RNF181 OS=Bos taurus GN=RNF181 PE=2
SV=1
Length = 153
Score = 78.6 bits (192), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 43/98 (43%), Positives = 57/98 (58%), Gaps = 3/98 (3%)
Query: 216 DPNRYGTPPAQKEAVEAMPSVKI---EETLQCSVCLDDFEIGTEAKEMPCKHKFHSQCIL 272
D + + PPA K AVE +P I + L+C VCL +FE A EMPC H FHS CIL
Sbjct: 45 DWDHHLPPPAAKTAVENLPRTVIRGSQAELKCPVCLLEFEEEETAIEMPCHHLFHSNCIL 104
Query: 273 PWLELHSSCPVCRCQLPADEFKPESERSRNSSNHQREH 310
PWL +SCP+CR +LP D+ E + + Q++H
Sbjct: 105 PWLSKTNSCPLCRHELPTDDDTYEEHKRDKARKQQQKH 142
>sp|Q6AXU4|RN181_RAT E3 ubiquitin-protein ligase RNF181 OS=Rattus norvegicus GN=Rnf181
PE=1 SV=1
Length = 165
Score = 77.0 bits (188), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 40/91 (43%), Positives = 53/91 (58%), Gaps = 3/91 (3%)
Query: 223 PPAQKEAVEAMPSVKIEET---LQCSVCLDDFEIGTEAKEMPCKHKFHSQCILPWLELHS 279
PPA K VE++P I + L+C VCL +FE EMPC H FHS CILPWL +
Sbjct: 64 PPAAKAVVESLPRTVIRSSKAELKCPVCLLEFEEEETVIEMPCHHLFHSNCILPWLSKTN 123
Query: 280 SCPVCRCQLPADEFKPESERSRNSSNHQREH 310
SCP+CR +LP D+ E + + Q++H
Sbjct: 124 SCPLCRHELPTDDDSYEEHKKDKARRQQQQH 154
>sp|O55176|PJA1_MOUSE E3 ubiquitin-protein ligase Praja-1 OS=Mus musculus GN=Pja1 PE=1
SV=3
Length = 578
Score = 72.4 bits (176), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 42/76 (55%), Gaps = 7/76 (9%)
Query: 221 GTPPAQKEAVEAMPSVKIEE-------TLQCSVCLDDFEIGTEAKEMPCKHKFHSQCILP 273
PPA KE+++A+P + + E + C +C ++ G A E+PC H FH C+
Sbjct: 500 ANPPASKESIDALPEILVTEDHGAVGQEMCCPICCSEYVKGEVATELPCHHYFHKPCVSI 559
Query: 274 WLELHSSCPVCRCQLP 289
WL+ +CPVCRC P
Sbjct: 560 WLQKSGTCPVCRCMFP 575
>sp|Q8NG27|PJA1_HUMAN E3 ubiquitin-protein ligase Praja-1 OS=Homo sapiens GN=PJA1 PE=1
SV=2
Length = 643
Score = 72.0 bits (175), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 42/76 (55%), Gaps = 7/76 (9%)
Query: 221 GTPPAQKEAVEAMPSVKIEE-------TLQCSVCLDDFEIGTEAKEMPCKHKFHSQCILP 273
PPA KE+++A+P + + E + C +C ++ G A E+PC H FH C+
Sbjct: 565 ANPPASKESIDALPEILVTEDHGAVGQEMCCPICCSEYVKGEVATELPCHHYFHKPCVSI 624
Query: 274 WLELHSSCPVCRCQLP 289
WL+ +CPVCRC P
Sbjct: 625 WLQKSGTCPVCRCMFP 640
>sp|Q8GYT9|SIS3_ARATH E3 ubiquitin-protein ligase SIS3 OS=Arabidopsis thaliana GN=SIS3
PE=2 SV=2
Length = 358
Score = 70.9 bits (172), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 37/90 (41%), Positives = 50/90 (55%), Gaps = 9/90 (10%)
Query: 210 QHLAENDPNRYGTPPAQKEAVEAM----PSVKIEETL----QCSVCLDDFEIGTEAKEMP 261
Q A P Y TP AQ EAVEA+ P +++ +C +CL++F IG E + +P
Sbjct: 194 QDAATYHPGLYLTP-AQTEAVEALIQELPKFRLKAVPDDCGECLICLEEFHIGHEVRGLP 252
Query: 262 CKHKFHSQCILPWLELHSSCPVCRCQLPAD 291
C H FH +CI WL L+ CP CRC + D
Sbjct: 253 CAHNFHVECIDQWLRLNVKCPRCRCSVFPD 282
>sp|Q9VE61|RN181_DROME E3 ubiquitin-protein ligase RNF181 homolog OS=Drosophila
melanogaster GN=CG7694 PE=2 SV=1
Length = 147
Score = 68.9 bits (167), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 45/134 (33%), Positives = 68/134 (50%), Gaps = 7/134 (5%)
Query: 190 HTPIGSLGDYFVGPGLDLL-LQHLAENDPNRYGTPPAQKEAVEAMPSVKIEET-----LQ 243
H P G LG + L L + + P A K A+ +P +I ++ L+
Sbjct: 10 HEPTGPLGANDLARNLKRLQVLAIMNGIDMEIEVPEASKRAILELPVHEIVKSDEGGDLE 69
Query: 244 CSVCLDDFEIGTEAKEMPCKHKFHSQCILPWLELHSSCPVCRCQLPADE-FKPESERSRN 302
CSVC + E G + + +PCKH+FH +CIL WL+ +SCP+CR +L D+ E R R
Sbjct: 70 CSVCKEPAEEGQKYRILPCKHEFHEECILLWLKKTNSCPLCRYELETDDPVYEELRRFRQ 129
Query: 303 SSNHQREHEHHSSD 316
++RE E+ D
Sbjct: 130 DEANRRERENTLLD 143
>sp|Q9FKX5|NIPL1_ARATH NEP1-interacting protein-like 1 OS=Arabidopsis thaliana GN=ATL27
PE=2 SV=1
Length = 221
Score = 62.8 bits (151), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 27/58 (46%), Positives = 37/58 (63%), Gaps = 5/58 (8%)
Query: 233 MPSVKIEET----LQCSVCLDDFEIGTEAKEMP-CKHKFHSQCILPWLELHSSCPVCR 285
+P V+I +T + CSVCL DF++G + +P C H FH CI WL H+SCP+CR
Sbjct: 161 IPKVRITDTSPEIVSCSVCLQDFQVGETVRSLPHCHHMFHLPCIDKWLRRHASCPLCR 218
>sp|Q9SL78|ATL12_ARATH Putative RING-H2 finger protein ATL12 OS=Arabidopsis thaliana
GN=ATL12 PE=3 SV=1
Length = 390
Score = 62.0 bits (149), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 39/120 (32%), Positives = 60/120 (50%), Gaps = 9/120 (7%)
Query: 227 KEAVEAMPSVK------IEETLQCSVCLDDFEIGTEAKEMP-CKHKFHSQCILPWLELHS 279
K+A+E++P + +++ L+CSVCL FE + +P C+H FH CI WLE H+
Sbjct: 101 KKAIESLPFFRFSALKGLKQGLECSVCLSKFEDVEILRLLPKCRHAFHIGCIDQWLEQHA 160
Query: 280 SCPVCRCQLPADEFKPESERSRNSSNHQREHEHHSSDHGTHASSEEGDGEGRNESGSRFS 339
+CP+CR ++ ++ S S + E D E EG N+ SRFS
Sbjct: 161 TCPLCRNRVNIEDDLSVLGNSSTSLRILNQSETREEDSRLEIYIER--EEGTNDGSSRFS 218
>sp|P30631|YOUD_CAEEL Uncharacterized RING finger protein ZK637.14 OS=Caenorhabditis
elegans GN=ZK637.14 PE=4 SV=2
Length = 161
Score = 60.8 bits (146), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 51/114 (44%), Gaps = 27/114 (23%)
Query: 216 DPNRYGTPPAQKEAVEAMPSVKIEETLQ------CSVCLDDFE----------------- 252
D G+ P K++ +A+ + E T Q C++CLD+ +
Sbjct: 38 DLYNVGSLPIDKKSYKALRLMDRETTDQQKEDATCAICLDNLQNNVDIPEDHVIKEELKI 97
Query: 253 ----IGTEAKEMPCKHKFHSQCILPWLELHSSCPVCRCQLPADEFKPESERSRN 302
GT MPCKH+FH C+ WLE +CP CR ++ D+ E ER RN
Sbjct: 98 DPTTFGTTVIVMPCKHRFHYFCLTLWLEAQQTCPTCRQKVKTDKEVEEEERQRN 151
>sp|Q9M2S6|SDIR1_ARATH E3 ubiquitin-protein ligase SDIR1 OS=Arabidopsis thaliana GN=SDIR1
PE=1 SV=1
Length = 273
Score = 60.5 bits (145), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 31/47 (65%)
Query: 239 EETLQCSVCLDDFEIGTEAKEMPCKHKFHSQCILPWLELHSSCPVCR 285
E+ L CSVCL+ +G + +PC H+FH+ CI PWL +CPVC+
Sbjct: 206 EDELTCSVCLEQVTVGEIVRTLPCLHQFHAGCIDPWLRQQGTCPVCK 252
>sp|Q5XF85|ATL42_ARATH E3 ubiquitin-protein ligase ATL42 OS=Arabidopsis thaliana GN=ATL42
PE=1 SV=2
Length = 432
Score = 60.1 bits (144), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 43/73 (58%), Gaps = 7/73 (9%)
Query: 227 KEAVEAMPSVKI------EETLQCSVCLDDFEIGTEAKEMP-CKHKFHSQCILPWLELHS 279
K A+E++P + ++ L CSVCL FE + +P C+H FH CI WLE H+
Sbjct: 100 KTAIESLPLFRFSALKGSKQGLDCSVCLSKFESVEILRLLPKCRHAFHIGCIDQWLEQHA 159
Query: 280 SCPVCRCQLPADE 292
+CP+CR ++ +E
Sbjct: 160 TCPLCRDRVSMEE 172
>sp|Q570X5|ATL58_ARATH RING-H2 finger protein ATL58 OS=Arabidopsis thaliana GN=ATL58 PE=2
SV=1
Length = 261
Score = 60.1 bits (144), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 41/68 (60%), Gaps = 6/68 (8%)
Query: 227 KEAVEAMPSVKIEETL-----QCSVCLDDFEIGTEAKEMP-CKHKFHSQCILPWLELHSS 280
KE E +P V +E+ QCSVCL D++ + +++P CKH FH CI WL H++
Sbjct: 78 KELREMLPIVVFKESFTVMDSQCSVCLGDYQPNDKLQQIPVCKHTFHMDCIDLWLTSHTT 137
Query: 281 CPVCRCQL 288
CP+CR L
Sbjct: 138 CPLCRLAL 145
>sp|Q9DBU5|RNF6_MOUSE E3 ubiquitin-protein ligase RNF6 OS=Mus musculus GN=Rnf6 PE=1 SV=1
Length = 667
Score = 60.1 bits (144), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 33/54 (61%), Gaps = 2/54 (3%)
Query: 244 CSVCLDDFEIGTEAKEMPCKHKFHSQCILPWLELHSSCPVCRCQLPADEFKPES 297
CSVC+ D+ G + +++PC H+FH CI WL + +CPVCR P EF S
Sbjct: 614 CSVCISDYVAGNKLRQLPCLHEFHIHCIDRWLSENCTCPVCR--RPVLEFGATS 665
>sp|Q9SN28|ATL7_ARATH RING-H2 finger protein ATL7 OS=Arabidopsis thaliana GN=ATL7 PE=2
SV=1
Length = 236
Score = 59.7 bits (143), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 41/68 (60%), Gaps = 6/68 (8%)
Query: 227 KEAVEAMPSVKIEETL-----QCSVCLDDFEIGTEAKEMP-CKHKFHSQCILPWLELHSS 280
K+ E +P V +E+ QCSVCL D++ + ++MP C H FH +CI WL H++
Sbjct: 89 KDIREMLPVVIYKESFIVKDSQCSVCLGDYQAEEKLQQMPSCGHTFHMECIDLWLTSHTT 148
Query: 281 CPVCRCQL 288
CP+CR L
Sbjct: 149 CPLCRLSL 156
>sp|Q9Y252|RNF6_HUMAN E3 ubiquitin-protein ligase RNF6 OS=Homo sapiens GN=RNF6 PE=1 SV=1
Length = 685
Score = 59.3 bits (142), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 29/42 (69%)
Query: 244 CSVCLDDFEIGTEAKEMPCKHKFHSQCILPWLELHSSCPVCR 285
CSVC+ D+ G + +++PC H+FH CI WL + +CP+CR
Sbjct: 632 CSVCISDYVTGNKLRQLPCMHEFHIHCIDRWLSENCTCPICR 673
>sp|Q8W571|ATL32_ARATH RING-H2 finger protein ATL32 OS=Arabidopsis thaliana GN=ATL32 PE=2
SV=3
Length = 323
Score = 59.3 bits (142), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 57/123 (46%), Gaps = 23/123 (18%)
Query: 199 YFVGPGLDLLLQHLAENDPN---RY-------------GTPPAQKEAVEAMPSVKIEET- 241
+F+ L + ++H A ++P+ RY G A E+ ++E+
Sbjct: 57 FFLTGLLSVYIRHCARSNPDSSTRYFRNRANDGSSRRGGLDNAVVESFPVFAYSSVKESK 116
Query: 242 -----LQCSVCLDDFEIGTEAKEMP-CKHKFHSQCILPWLELHSSCPVCRCQLPADEFKP 295
L+C++CL++ E + +P C H FH CI WL H++CPVCR L A KP
Sbjct: 117 IGSKDLECAICLNELEDHETVRLLPICNHLFHIDCIDTWLYSHATCPVCRSNLTAKSNKP 176
Query: 296 ESE 298
E
Sbjct: 177 GDE 179
>sp|Q8GT74|NIP2_ARATH NEP1-interacting protein 2 OS=Arabidopsis thaliana GN=NIP2 PE=1
SV=1
Length = 241
Score = 58.9 bits (141), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 39/75 (52%), Gaps = 10/75 (13%)
Query: 221 GTPPAQKEAVEAMPSVKI---------EETLQCSVCLDDFEIGTEAKEMP-CKHKFHSQC 270
G+ + VE +P + I E T CSVCL DF++G + +P C H FH C
Sbjct: 164 GSKGLTGDLVEKIPKMTITGNNNTDASENTDSCSVCLQDFQLGETVRSLPHCHHMFHLPC 223
Query: 271 ILPWLELHSSCPVCR 285
I WL H SCP+CR
Sbjct: 224 IDNWLLRHGSCPMCR 238
>sp|Q5EAE9|ATL43_ARATH RING-H2 finger protein ATL43 OS=Arabidopsis thaliana GN=ATL43 PE=2
SV=2
Length = 407
Score = 58.9 bits (141), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 42/69 (60%), Gaps = 7/69 (10%)
Query: 227 KEAVEAMPSVKI------EETLQCSVCLDDFEIGTEAKEMP-CKHKFHSQCILPWLELHS 279
+ +E++P + ++ L+C+VCL FE + +P CKH FH +C+ WL+ HS
Sbjct: 123 RSVIESLPVFRFGALSGHKDGLECAVCLARFEPTEVLRLLPKCKHAFHVECVDTWLDAHS 182
Query: 280 SCPVCRCQL 288
+CP+CR ++
Sbjct: 183 TCPLCRYRV 191
>sp|Q9LN71|RING1_ARATH E3 ubiquitin-protein ligase At1g12760 OS=Arabidopsis thaliana
GN=At1g12760 PE=2 SV=1
Length = 408
Score = 58.5 bits (140), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 34/48 (70%)
Query: 238 IEETLQCSVCLDDFEIGTEAKEMPCKHKFHSQCILPWLELHSSCPVCR 285
++E +C +CL +E GTE +E+PC H FH C+ WL ++++CP+C+
Sbjct: 347 LQEDAECCICLSAYEDGTELRELPCGHHFHCSCVDKWLYINATCPLCK 394
>sp|Q9NVW2|RNF12_HUMAN E3 ubiquitin-protein ligase RLIM OS=Homo sapiens GN=RLIM PE=1 SV=3
Length = 624
Score = 58.5 bits (140), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 42/67 (62%), Gaps = 3/67 (4%)
Query: 227 KEAVE--AMPSVKIEETLQ-CSVCLDDFEIGTEAKEMPCKHKFHSQCILPWLELHSSCPV 283
KE ++ AM S + L+ CSVC+ ++ G + +++PC H++H CI WL +S+CP+
Sbjct: 550 KEQIDNLAMRSFGENDALKTCSVCITEYTEGNKLRKLPCSHEYHVHCIDRWLSENSTCPI 609
Query: 284 CRCQLPA 290
CR + A
Sbjct: 610 CRRAVLA 616
>sp|Q8LGA5|ATL31_ARATH E3 ubiquitin-protein ligase ATL31 OS=Arabidopsis thaliana GN=ATL31
PE=1 SV=2
Length = 368
Score = 58.5 bits (140), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 40/79 (50%), Gaps = 10/79 (12%)
Query: 228 EAVEAMPSVKIEET---------LQCSVCLDDFEIGTEAKEMP-CKHKFHSQCILPWLEL 277
E +E P+ E L+C++CL++FE + +P C H FH CI WL+
Sbjct: 99 ETIETFPTFVYSEVKTQKIGKGALECAICLNEFEDDETLRLLPKCDHVFHPHCIGAWLQG 158
Query: 278 HSSCPVCRCQLPADEFKPE 296
H +CPVCR L +PE
Sbjct: 159 HVTCPVCRTNLAEQTPEPE 177
>sp|Q3UHJ8|RNF44_MOUSE RING finger protein 44 OS=Mus musculus GN=Rnf44 PE=2 SV=1
Length = 407
Score = 58.5 bits (140), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 40/66 (60%), Gaps = 8/66 (12%)
Query: 227 KEAVEAMPSVKI-------EETLQCSVCLDDFEIGTEAKEMPCKHKFHSQCILPWLELHS 279
K +E +PS + E+TL C VC DFE+ + +PC H+FH++C+ WL+ +
Sbjct: 332 KADIEQLPSYRFNPDSHQSEQTL-CVVCFSDFEVRQLLRVLPCNHEFHAKCVDKWLKANR 390
Query: 280 SCPVCR 285
+CP+CR
Sbjct: 391 TCPICR 396
>sp|Q80U04|PJA2_MOUSE E3 ubiquitin-protein ligase Praja-2 OS=Mus musculus GN=Pja2 PE=1
SV=2
Length = 707
Score = 58.2 bits (139), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 37/76 (48%), Gaps = 7/76 (9%)
Query: 221 GTPPAQKEAVEAMPSVKIEETLQ-------CSVCLDDFEIGTEAKEMPCKHKFHSQCILP 273
PPA KE+++ +P + E C +C ++ A E+PC H FH C+
Sbjct: 603 ANPPASKESIDGLPETLVLEDHTAIGQEQCCPICCSEYIKDDIATELPCHHFFHKPCVSI 662
Query: 274 WLELHSSCPVCRCQLP 289
WL+ +CPVCR P
Sbjct: 663 WLQKSGTCPVCRRHFP 678
>sp|Q4V7B8|RNF44_RAT RING finger protein 44 OS=Rattus norvegicus GN=Rnf44 PE=2 SV=1
Length = 350
Score = 58.2 bits (139), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 40/66 (60%), Gaps = 8/66 (12%)
Query: 227 KEAVEAMPSVKI-------EETLQCSVCLDDFEIGTEAKEMPCKHKFHSQCILPWLELHS 279
K +E +PS + E+TL C VC DFE+ + +PC H+FH++C+ WL+ +
Sbjct: 275 KADIEQLPSYRFNPDSHQSEQTL-CVVCFSDFEVRQLLRVLPCNHEFHAKCVDKWLKANR 333
Query: 280 SCPVCR 285
+CP+CR
Sbjct: 334 TCPICR 339
>sp|Q5R4R1|PJA2_PONAB E3 ubiquitin-protein ligase Praja-2 OS=Pongo abelii GN=PJA2 PE=2
SV=1
Length = 708
Score = 58.2 bits (139), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 37/76 (48%), Gaps = 7/76 (9%)
Query: 221 GTPPAQKEAVEAMPSVKIEETLQ-------CSVCLDDFEIGTEAKEMPCKHKFHSQCILP 273
PPA KE+++ +P + E C +C ++ A E+PC H FH C+
Sbjct: 604 ANPPASKESIDGLPETLVLEDHTAIGQEQCCPICCSEYIKDDIATELPCHHFFHKPCVSI 663
Query: 274 WLELHSSCPVCRCQLP 289
WL+ +CPVCR P
Sbjct: 664 WLQKSGTCPVCRRHFP 679
>sp|O43164|PJA2_HUMAN E3 ubiquitin-protein ligase Praja-2 OS=Homo sapiens GN=PJA2 PE=1
SV=4
Length = 708
Score = 58.2 bits (139), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 37/76 (48%), Gaps = 7/76 (9%)
Query: 221 GTPPAQKEAVEAMPSVKIEETLQ-------CSVCLDDFEIGTEAKEMPCKHKFHSQCILP 273
PPA KE+++ +P + E C +C ++ A E+PC H FH C+
Sbjct: 604 ANPPASKESIDGLPETLVLEDHTAIGQEQCCPICCSEYIKDDIATELPCHHFFHKPCVSI 663
Query: 274 WLELHSSCPVCRCQLP 289
WL+ +CPVCR P
Sbjct: 664 WLQKSGTCPVCRRHFP 679
>sp|Q9SN27|ATL59_ARATH E3 ubiquitin-protein ligase ATL59 OS=Arabidopsis thaliana GN=ATL59
PE=1 SV=1
Length = 225
Score = 58.2 bits (139), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 41/68 (60%), Gaps = 6/68 (8%)
Query: 227 KEAVEAMPSVKIEETL-----QCSVCLDDFEIGTEAKEMP-CKHKFHSQCILPWLELHSS 280
K+ E +P V +E+ QCSVCL D++ + ++MP C H FH +CI WL H++
Sbjct: 75 KDIREMLPIVIYKESFTVNDTQCSVCLGDYQAEEKLQQMPSCGHTFHMECIDLWLTSHTT 134
Query: 281 CPVCRCQL 288
CP+CR L
Sbjct: 135 CPLCRLSL 142
>sp|Q63364|PJA2_RAT E3 ubiquitin-protein ligase Praja-2 OS=Rattus norvegicus GN=Pja2
PE=2 SV=1
Length = 707
Score = 57.8 bits (138), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 37/76 (48%), Gaps = 7/76 (9%)
Query: 221 GTPPAQKEAVEAMPSVKIEETLQ-------CSVCLDDFEIGTEAKEMPCKHKFHSQCILP 273
PPA KE+++ +P + E C +C ++ A E+PC H FH C+
Sbjct: 603 ANPPASKESIDGLPETLVLEDHTAIGQEQCCPICCSEYIKDDIATELPCHHFFHKPCVSI 662
Query: 274 WLELHSSCPVCRCQLP 289
WL+ +CPVCR P
Sbjct: 663 WLQKSGTCPVCRRHFP 678
>sp|Q8GUU2|RIE1_ARATH E3 ubiquitin protein ligase RIE1 OS=Arabidopsis thaliana GN=RIE1
PE=2 SV=1
Length = 359
Score = 57.8 bits (138), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 31/48 (64%)
Query: 238 IEETLQCSVCLDDFEIGTEAKEMPCKHKFHSQCILPWLELHSSCPVCR 285
+ E C +CL +E G E +PC H FHS CI+ WL++ ++CP+C+
Sbjct: 301 LAEDADCCICLSSYEDGAELHALPCNHHFHSTCIVKWLKMRATCPLCK 348
>sp|Q8LF65|ATL17_ARATH RING-H2 finger protein ATL17 OS=Arabidopsis thaliana GN=ATL17 PE=2
SV=2
Length = 235
Score = 57.8 bits (138), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
Query: 230 VEAMPSVKIEETLQCSVCLDDFEIGTEAKEMP-CKHKFHSQCILPWLELHSSCPVCRCQL 288
+ +V ++CSVCL +F+ + MP CKH FH CI W HSSCP+CR Q+
Sbjct: 62 IFTFSAVTALFAMECSVCLSEFKDNESGRVMPNCKHTFHVHCIDMWFHSHSSCPLCRSQI 121
>sp|Q9WTV7|RNF12_MOUSE E3 ubiquitin-protein ligase RLIM OS=Mus musculus GN=Rlim PE=1 SV=2
Length = 600
Score = 57.8 bits (138), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 30/42 (71%)
Query: 244 CSVCLDDFEIGTEAKEMPCKHKFHSQCILPWLELHSSCPVCR 285
CSVC+ ++ G + +++PC H++H CI WL +S+CP+CR
Sbjct: 546 CSVCITEYTEGNKLRKLPCSHEYHVHCIDRWLSENSTCPICR 587
>sp|Q8RXX9|ATL6_ARATH E3 ubiquitin-protein ligase ATL6 OS=Arabidopsis thaliana GN=ATL6
PE=1 SV=2
Length = 398
Score = 57.4 bits (137), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 31/48 (64%), Gaps = 1/48 (2%)
Query: 242 LQCSVCLDDFEIGTEAKEMP-CKHKFHSQCILPWLELHSSCPVCRCQL 288
L+C++CL++FE + +P C H FH CI WLE H +CPVCR L
Sbjct: 126 LECAICLNEFEDDETLRLLPKCDHVFHPHCIDAWLEAHVTCPVCRANL 173
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.313 0.131 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 152,890,652
Number of Sequences: 539616
Number of extensions: 7061705
Number of successful extensions: 38707
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 482
Number of HSP's successfully gapped in prelim test: 639
Number of HSP's that attempted gapping in prelim test: 31489
Number of HSP's gapped (non-prelim): 5049
length of query: 375
length of database: 191,569,459
effective HSP length: 119
effective length of query: 256
effective length of database: 127,355,155
effective search space: 32602919680
effective search space used: 32602919680
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 62 (28.5 bits)