Query 017252
Match_columns 375
No_of_seqs 371 out of 1889
Neff 6.1
Searched_HMMs 29240
Date Mon Mar 25 11:26:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017252.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017252hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2l0b_A E3 ubiquitin-protein li 99.5 1.1E-14 3.8E-19 116.9 5.3 73 218-290 10-89 (91)
2 2ect_A Ring finger protein 126 99.4 3.3E-13 1.1E-17 104.5 6.2 58 238-295 12-69 (78)
3 1iym_A EL5; ring-H2 finger, ub 99.4 2.9E-13 9.8E-18 97.8 4.6 51 239-289 3-54 (55)
4 1x4j_A Ring finger protein 38; 99.4 1.5E-13 5.2E-18 105.9 3.1 52 240-291 22-73 (75)
5 2kiz_A E3 ubiquitin-protein li 99.3 8.7E-13 3E-17 99.8 5.8 53 239-291 12-64 (69)
6 2ep4_A Ring finger protein 24; 99.3 7.7E-13 2.6E-17 101.4 5.4 54 237-290 11-64 (74)
7 3ng2_A RNF4, snurf, ring finge 99.3 1.4E-12 4.9E-17 98.7 3.5 57 238-294 7-67 (71)
8 2djb_A Polycomb group ring fin 99.3 3.7E-12 1.3E-16 97.4 5.5 55 237-294 11-66 (72)
9 2ea6_A Ring finger protein 4; 99.3 2.2E-12 7.4E-17 96.9 3.6 54 237-290 11-68 (69)
10 2ecm_A Ring finger and CHY zin 99.3 4.4E-12 1.5E-16 91.4 4.8 50 240-289 4-54 (55)
11 1v87_A Deltex protein 2; ring- 99.2 6.3E-12 2.1E-16 104.1 5.4 52 240-291 24-95 (114)
12 2yur_A Retinoblastoma-binding 99.2 9.5E-12 3.3E-16 95.8 5.7 52 237-291 11-65 (74)
13 2ysl_A Tripartite motif-contai 99.2 1E-11 3.5E-16 94.6 5.6 53 237-292 16-71 (73)
14 2d8t_A Dactylidin, ring finger 99.2 5.1E-12 1.7E-16 96.4 3.7 50 239-291 13-62 (71)
15 1t1h_A Gspef-atpub14, armadill 99.2 6.9E-12 2.3E-16 97.0 4.4 55 237-294 4-59 (78)
16 2ct2_A Tripartite motif protei 99.2 1.6E-11 5.5E-16 96.6 5.6 57 236-292 10-70 (88)
17 2xeu_A Ring finger protein 4; 99.2 3.9E-12 1.3E-16 94.1 1.8 54 240-293 2-59 (64)
18 2ecy_A TNF receptor-associated 99.2 1E-11 3.4E-16 93.3 3.8 53 237-292 11-64 (66)
19 4ayc_A E3 ubiquitin-protein li 99.2 6.3E-12 2.1E-16 108.2 3.0 50 239-291 51-100 (138)
20 2ecw_A Tripartite motif-contai 99.2 1.8E-11 6.3E-16 95.2 5.1 55 237-294 15-75 (85)
21 2csy_A Zinc finger protein 183 99.2 1.7E-11 5.9E-16 95.6 4.8 48 239-289 13-60 (81)
22 2ecv_A Tripartite motif-contai 99.2 2.8E-11 9.5E-16 94.2 5.3 55 237-294 15-75 (85)
23 2ecl_A Ring-box protein 2; RNF 99.1 8.4E-12 2.9E-16 98.1 2.2 50 241-290 15-76 (81)
24 2ecn_A Ring finger protein 141 99.1 7.8E-12 2.7E-16 94.7 1.9 51 238-292 12-62 (70)
25 3lrq_A E3 ubiquitin-protein li 99.1 8.9E-12 3E-16 101.6 2.3 53 238-293 19-73 (100)
26 1chc_A Equine herpes virus-1 r 99.1 2.2E-11 7.4E-16 91.6 4.1 48 240-289 4-51 (68)
27 2egp_A Tripartite motif-contai 99.1 8.9E-12 3E-16 96.2 1.4 53 237-292 8-67 (79)
28 3dpl_R Ring-box protein 1; ubi 99.1 3.2E-11 1.1E-15 100.0 4.7 49 241-289 37-100 (106)
29 2ysj_A Tripartite motif-contai 99.1 5.7E-11 2E-15 88.2 4.8 45 237-284 16-63 (63)
30 3fl2_A E3 ubiquitin-protein li 99.1 3.9E-11 1.3E-15 101.1 3.8 49 239-290 50-99 (124)
31 2y43_A E3 ubiquitin-protein li 99.1 2.5E-11 8.6E-16 98.2 1.9 52 239-293 20-72 (99)
32 3ztg_A E3 ubiquitin-protein li 99.1 6E-11 2.1E-15 94.5 3.9 50 237-289 9-61 (92)
33 2kr4_A Ubiquitin conjugation f 99.1 6.2E-11 2.1E-15 94.1 3.6 56 238-296 11-66 (85)
34 2ckl_A Polycomb group ring fin 99.1 6.7E-11 2.3E-15 97.3 3.9 52 237-291 11-63 (108)
35 2d8s_A Cellular modulator of i 99.0 1.6E-10 5.5E-15 91.0 5.1 53 239-292 13-72 (80)
36 1wgm_A Ubiquitin conjugation f 99.0 1.3E-10 4.4E-15 94.9 4.3 58 238-298 19-77 (98)
37 2kre_A Ubiquitin conjugation f 99.0 1.2E-10 4.3E-15 95.3 4.2 58 237-297 25-82 (100)
38 2ecj_A Tripartite motif-contai 99.0 1.1E-10 3.9E-15 84.7 3.2 45 237-284 11-58 (58)
39 1jm7_A BRCA1, breast cancer ty 99.0 8.9E-11 3.1E-15 96.5 2.9 53 239-294 19-74 (112)
40 1z6u_A NP95-like ring finger p 99.0 1.5E-10 5.2E-15 101.3 3.7 50 239-291 76-126 (150)
41 3hct_A TNF receptor-associated 99.0 1.2E-10 4.1E-15 97.5 2.4 56 237-295 14-70 (118)
42 4ap4_A E3 ubiquitin ligase RNF 99.0 1.5E-10 5E-15 97.2 3.0 55 239-293 5-63 (133)
43 3l11_A E3 ubiquitin-protein li 99.0 8.4E-11 2.9E-15 97.6 1.2 49 238-289 12-61 (115)
44 1g25_A CDK-activating kinase a 99.0 1.8E-10 6.1E-15 86.1 2.7 55 240-294 2-59 (65)
45 2ckl_B Ubiquitin ligase protei 99.0 1.8E-10 6.1E-15 101.6 2.9 49 239-290 52-102 (165)
46 4a0k_B E3 ubiquitin-protein li 98.9 8.2E-11 2.8E-15 99.3 0.1 49 241-289 48-111 (117)
47 1rmd_A RAG1; V(D)J recombinati 98.9 1.3E-10 4.3E-15 96.7 1.0 54 238-294 20-74 (116)
48 1jm7_B BARD1, BRCA1-associated 98.9 4.3E-10 1.5E-14 93.9 3.1 52 239-295 20-72 (117)
49 4ap4_A E3 ubiquitin ligase RNF 98.9 2.3E-10 8E-15 95.9 0.9 55 239-293 70-128 (133)
50 3knv_A TNF receptor-associated 98.9 5.8E-10 2E-14 96.6 2.3 52 237-291 27-79 (141)
51 2yu4_A E3 SUMO-protein ligase 98.8 4.9E-10 1.7E-14 90.4 1.0 57 239-298 5-71 (94)
52 2c2l_A CHIP, carboxy terminus 98.8 9.4E-10 3.2E-14 103.3 3.0 57 237-296 204-261 (281)
53 2ct0_A Non-SMC element 1 homol 98.8 1.8E-09 6E-14 84.0 3.8 51 240-292 14-66 (74)
54 1bor_A Transcription factor PM 98.8 1.6E-09 5.4E-14 79.1 3.1 47 239-291 4-50 (56)
55 1e4u_A Transcriptional repress 98.8 3.8E-09 1.3E-13 82.7 4.0 56 237-293 7-65 (78)
56 2vje_A E3 ubiquitin-protein li 98.7 4.1E-09 1.4E-13 79.1 3.4 48 239-289 6-56 (64)
57 4ic3_A E3 ubiquitin-protein li 98.7 1.9E-09 6.4E-14 83.1 1.5 44 239-289 22-66 (74)
58 3hcs_A TNF receptor-associated 98.7 3.2E-09 1.1E-13 93.9 2.4 56 237-295 14-70 (170)
59 2y1n_A E3 ubiquitin-protein li 98.7 6.5E-09 2.2E-13 103.9 4.5 48 241-291 332-380 (389)
60 2f42_A STIP1 homology and U-bo 98.7 9.2E-09 3.2E-13 92.7 4.0 58 237-297 102-160 (179)
61 2vje_B MDM4 protein; proto-onc 98.6 1.2E-08 4.3E-13 76.2 3.1 46 241-289 7-55 (63)
62 2ecg_A Baculoviral IAP repeat- 98.5 1.6E-08 5.4E-13 77.9 1.1 44 240-290 24-68 (75)
63 2bay_A PRE-mRNA splicing facto 98.5 4.6E-08 1.6E-12 73.0 1.8 52 241-295 3-55 (61)
64 2yho_A E3 ubiquitin-protein li 98.4 4.1E-08 1.4E-12 76.7 1.2 44 240-290 17-61 (79)
65 3htk_C E3 SUMO-protein ligase 98.4 4.9E-08 1.7E-12 92.6 1.7 60 235-297 175-239 (267)
66 3t6p_A Baculoviral IAP repeat- 98.4 6.5E-08 2.2E-12 95.5 2.3 45 238-289 292-337 (345)
67 2ea5_A Cell growth regulator w 98.4 2.1E-07 7.4E-12 70.6 4.5 44 240-290 14-58 (68)
68 3k1l_B Fancl; UBC, ring, RWD, 98.4 9.6E-08 3.3E-12 93.7 2.3 51 240-290 307-373 (381)
69 1wim_A KIAA0161 protein; ring 98.3 2.6E-07 8.9E-12 73.9 2.6 48 240-287 4-61 (94)
70 1vyx_A ORF K3, K3RING; zinc-bi 98.2 4.1E-07 1.4E-11 67.6 2.8 48 240-290 5-59 (60)
71 3vk6_A E3 ubiquitin-protein li 97.6 2.3E-05 7.8E-10 63.8 3.1 45 243-289 3-48 (101)
72 3nw0_A Non-structural maintena 97.5 9.9E-05 3.4E-09 69.1 6.2 49 241-292 180-231 (238)
73 2ko5_A Ring finger protein Z; 93.3 0.057 1.9E-06 43.3 3.4 54 234-292 21-75 (99)
74 2jun_A Midline-1; B-BOX, TRIM, 92.3 0.047 1.6E-06 43.4 1.6 33 240-274 2-36 (101)
75 3m62_A Ubiquitin conjugation f 91.0 0.14 4.7E-06 56.4 4.0 58 239-299 889-947 (968)
76 2kdx_A HYPA, hydrogenase/ureas 90.5 0.17 5.7E-06 41.9 3.3 34 7-41 71-105 (119)
77 1wil_A KIAA1045 protein; ring 85.9 0.47 1.6E-05 37.3 2.8 33 238-274 12-47 (89)
78 4ayb_P DNA-directed RNA polyme 84.5 0.47 1.6E-05 33.2 2.0 32 8-39 2-36 (48)
79 2lri_C Autoimmune regulator; Z 84.5 0.69 2.4E-05 34.5 3.1 44 241-287 12-59 (66)
80 3a43_A HYPD, hydrogenase nicke 83.1 0.62 2.1E-05 39.7 2.7 32 7-38 68-119 (139)
81 3h0g_L DNA-directed RNA polyme 80.4 1 3.5E-05 33.5 2.6 32 7-38 19-50 (63)
82 1mm2_A MI2-beta; PHD, zinc fin 75.9 1.5 5.3E-05 31.8 2.5 45 240-287 8-56 (61)
83 2ct7_A Ring finger protein 31; 75.3 1.5 5E-05 34.1 2.3 36 7-42 23-59 (86)
84 1twf_L ABC10-alpha, DNA-direct 74.7 1.8 6.2E-05 32.7 2.6 28 7-34 26-53 (70)
85 2l5u_A Chromodomain-helicase-D 73.8 1.8 6.2E-05 31.4 2.4 44 239-286 9-57 (61)
86 1we9_A PHD finger family prote 72.3 1.3 4.4E-05 32.2 1.3 47 240-286 5-57 (64)
87 1f62_A Transcription factor WS 71.7 2 6.8E-05 29.8 2.1 44 243-286 2-49 (51)
88 2gmg_A Hypothetical protein PF 71.3 2.4 8.3E-05 34.5 2.8 33 7-39 65-97 (105)
89 1fp0_A KAP-1 corepressor; PHD 69.7 3.1 0.00011 32.8 3.0 46 239-287 23-72 (88)
90 2cs3_A Protein C14ORF4, MY039 68.8 5.2 0.00018 31.1 4.0 37 240-277 14-52 (93)
91 3i2d_A E3 SUMO-protein ligase 66.0 3.1 0.00011 41.1 2.8 52 241-295 249-305 (371)
92 4fo9_A E3 SUMO-protein ligase 63.7 3.6 0.00012 40.4 2.8 54 241-297 215-273 (360)
93 3u5n_A E3 ubiquitin-protein li 62.9 2.6 8.9E-05 37.8 1.5 44 241-288 7-55 (207)
94 2yql_A PHD finger protein 21A; 62.3 1.5 5.2E-05 31.1 -0.1 43 240-285 8-54 (56)
95 3o36_A Transcription intermedi 60.7 3.2 0.00011 36.4 1.7 45 241-288 4-52 (184)
96 2k16_A Transcription initiatio 60.6 2.6 9E-05 31.5 1.0 48 241-289 18-70 (75)
97 1dx8_A Rubredoxin; electron tr 60.5 6.3 0.00021 29.7 3.0 36 1-38 1-55 (70)
98 1wep_A PHF8; structural genomi 58.8 10 0.00034 28.7 4.0 47 241-288 12-64 (79)
99 2ysm_A Myeloid/lymphoid or mix 57.7 4.9 0.00017 32.3 2.2 37 240-276 6-42 (111)
100 2con_A RUH-035 protein, NIN on 57.6 5.7 0.0002 30.7 2.4 30 10-41 16-45 (79)
101 2lv9_A Histone-lysine N-methyl 55.4 5.7 0.0002 31.5 2.2 45 241-286 28-75 (98)
102 3v43_A Histone acetyltransfera 54.5 6.5 0.00022 31.8 2.4 46 241-286 61-111 (112)
103 2e6r_A Jumonji/ARID domain-con 54.4 2.9 9.9E-05 32.9 0.3 48 238-286 13-65 (92)
104 1xwh_A Autoimmune regulator; P 53.4 4.2 0.00015 29.8 1.0 44 240-286 7-54 (66)
105 3lqh_A Histone-lysine N-methyl 52.9 8.9 0.0003 34.0 3.2 47 242-288 3-64 (183)
106 2l43_A N-teminal domain from h 51.6 4.6 0.00016 31.5 1.0 53 238-290 22-78 (88)
107 2ro1_A Transcription intermedi 50.0 5.8 0.0002 35.2 1.5 44 241-287 2-49 (189)
108 1wev_A Riken cDNA 1110020M19; 48.4 4.7 0.00016 31.4 0.6 49 241-289 16-74 (88)
109 3shb_A E3 ubiquitin-protein li 47.3 5.1 0.00017 30.6 0.6 41 243-286 28-76 (77)
110 1y02_A CARP2, FYVE-ring finger 47.0 3.8 0.00013 34.1 -0.2 47 241-287 19-66 (120)
111 2puy_A PHD finger protein 21A; 45.7 5 0.00017 28.7 0.3 45 241-288 5-53 (60)
112 2e6s_A E3 ubiquitin-protein li 45.2 8.5 0.00029 29.3 1.6 43 243-286 28-76 (77)
113 3t7l_A Zinc finger FYVE domain 44.0 17 0.00059 28.2 3.3 36 240-275 19-55 (90)
114 1joc_A EEA1, early endosomal a 43.2 17 0.00057 30.1 3.3 34 241-274 69-103 (125)
115 1dvp_A HRS, hepatocyte growth 42.6 25 0.00087 31.5 4.6 34 241-274 161-195 (220)
116 2kgg_A Histone demethylase jar 42.6 18 0.00061 25.1 2.8 43 243-285 4-52 (52)
117 1z2q_A LM5-1; membrane protein 41.2 20 0.00068 27.4 3.2 35 240-274 20-55 (84)
118 2dj7_A Actin-binding LIM prote 40.7 26 0.00089 26.1 3.8 42 238-289 12-53 (80)
119 2k2d_A Ring finger and CHY zin 40.6 14 0.00046 28.4 2.1 33 9-42 37-71 (79)
120 1weu_A Inhibitor of growth fam 40.0 21 0.00071 28.1 3.1 44 240-287 35-85 (91)
121 2yw8_A RUN and FYVE domain-con 39.4 20 0.00069 27.2 2.9 34 241-274 19-53 (82)
122 1x4u_A Zinc finger, FYVE domai 39.0 22 0.00076 27.1 3.1 33 241-273 14-47 (84)
123 2cu8_A Cysteine-rich protein 2 38.7 24 0.00083 25.6 3.2 41 241-291 9-49 (76)
124 1vd4_A Transcription initiatio 38.4 22 0.00075 24.5 2.8 36 7-42 12-55 (62)
125 1weo_A Cellulose synthase, cat 38.3 25 0.00086 27.8 3.3 49 241-289 16-69 (93)
126 3asl_A E3 ubiquitin-protein li 38.2 11 0.00036 28.1 1.1 43 243-286 20-68 (70)
127 1wen_A Inhibitor of growth fam 37.7 23 0.00077 26.4 2.9 41 240-287 15-65 (71)
128 1x64_A Alpha-actinin-2 associa 37.5 28 0.00095 26.2 3.5 40 241-291 25-64 (89)
129 3uk3_C Zinc finger protein 217 37.4 8.9 0.0003 25.5 0.5 32 7-38 2-44 (57)
130 1x62_A C-terminal LIM domain p 36.7 19 0.00065 26.5 2.4 38 241-289 15-52 (79)
131 1iml_A CRIP, cysteine rich int 36.7 20 0.00068 26.1 2.5 38 243-290 2-39 (76)
132 2dar_A PDZ and LIM domain prot 36.7 22 0.00076 26.9 2.8 40 241-291 25-64 (90)
133 2d8z_A Four and A half LIM dom 36.2 34 0.0012 24.3 3.6 39 242-291 6-44 (70)
134 1wfk_A Zinc finger, FYVE domai 35.5 25 0.00086 27.2 3.0 48 241-288 9-64 (88)
135 1wyh_A SLIM 2, skeletal muscle 34.1 37 0.0013 24.2 3.5 42 241-291 5-46 (72)
136 3ask_A E3 ubiquitin-protein li 34.0 13 0.00044 34.2 1.2 44 242-286 175-224 (226)
137 2ku3_A Bromodomain-containing 34.0 17 0.00057 27.2 1.6 48 239-286 14-65 (71)
138 2d8v_A Zinc finger FYVE domain 33.7 18 0.00063 26.9 1.8 30 240-273 7-37 (67)
139 1bbo_A Human enhancer-binding 33.7 16 0.00054 24.1 1.4 30 9-38 1-41 (57)
140 1z60_A TFIIH basal transcripti 32.8 13 0.00045 27.0 0.8 42 242-284 16-58 (59)
141 1x6e_A Zinc finger protein 24; 32.7 23 0.00078 24.8 2.2 32 7-38 12-54 (72)
142 1wee_A PHD finger family prote 32.7 13 0.00043 27.6 0.7 45 241-286 16-65 (72)
143 2ri7_A Nucleosome-remodeling f 32.6 9.5 0.00032 32.9 0.0 46 240-286 7-58 (174)
144 1zbd_B Rabphilin-3A; G protein 32.3 26 0.00088 29.5 2.7 47 240-286 54-106 (134)
145 2yt5_A Metal-response element- 32.2 23 0.00078 25.4 2.1 48 240-287 5-61 (66)
146 2ysm_A Myeloid/lymphoid or mix 31.9 8.7 0.0003 30.8 -0.3 43 243-286 56-103 (111)
147 2m0e_A Zinc finger and BTB dom 31.6 18 0.00061 19.7 1.2 11 27-37 3-13 (29)
148 2xb1_A Pygopus homolog 2, B-ce 31.3 32 0.0011 27.5 3.0 47 242-288 4-62 (105)
149 1vfy_A Phosphatidylinositol-3- 31.3 32 0.0011 25.5 2.8 34 241-274 11-45 (73)
150 1wew_A DNA-binding family prot 31.3 12 0.00043 28.1 0.5 47 240-287 15-72 (78)
151 1nyp_A Pinch protein; LIM doma 31.0 33 0.0011 24.0 2.8 39 242-291 6-44 (66)
152 2lv2_A Insulinoma-associated p 31.0 31 0.001 26.2 2.7 32 7-38 26-68 (85)
153 1pft_A TFIIB, PFTFIIBN; N-term 30.9 28 0.00096 23.7 2.3 34 8-42 4-40 (50)
154 1ryq_A DNA-directed RNA polyme 30.8 23 0.00078 26.6 1.9 19 11-34 13-31 (69)
155 1x4l_A Skeletal muscle LIM-pro 29.6 42 0.0014 24.0 3.2 42 241-291 5-48 (72)
156 2d8x_A Protein pinch; LIM doma 29.6 31 0.0011 24.5 2.5 40 241-291 5-44 (70)
157 2cor_A Pinch protein; LIM doma 29.5 48 0.0016 24.4 3.6 40 241-291 15-54 (79)
158 3v43_A Histone acetyltransfera 29.4 52 0.0018 26.3 4.0 32 241-272 5-42 (112)
159 3zyq_A Hepatocyte growth facto 29.3 27 0.00093 31.6 2.6 34 241-274 164-198 (226)
160 3qt1_I DNA-directed RNA polyme 29.0 35 0.0012 28.6 3.0 34 7-42 22-60 (133)
161 2lce_A B-cell lymphoma 6 prote 28.7 26 0.00089 24.6 1.9 33 6-38 14-57 (74)
162 1wem_A Death associated transc 28.6 13 0.00044 27.8 0.2 45 241-287 16-70 (76)
163 1v6g_A Actin binding LIM prote 28.3 35 0.0012 25.1 2.6 39 242-291 16-54 (81)
164 1wig_A KIAA1808 protein; LIM d 28.2 37 0.0013 24.6 2.7 37 242-289 6-42 (73)
165 2vpb_A Hpygo1, pygopus homolog 28.2 37 0.0013 24.8 2.6 32 241-272 8-41 (65)
166 3mpx_A FYVE, rhogef and PH dom 28.2 12 0.00042 36.5 0.0 48 241-288 375-430 (434)
167 2lbm_A Transcriptional regulat 28.1 37 0.0013 28.8 3.0 42 241-286 63-116 (142)
168 2kwj_A Zinc finger protein DPF 28.1 5.4 0.00019 32.4 -2.2 46 242-287 59-108 (114)
169 1wd2_A Ariadne-1 protein homol 27.9 18 0.00062 26.1 0.9 37 241-277 6-47 (60)
170 2co8_A NEDD9 interacting prote 27.9 60 0.0021 24.0 3.9 43 240-292 14-56 (82)
171 1x61_A Thyroid receptor intera 27.9 62 0.0021 22.9 3.9 39 242-289 6-44 (72)
172 4gzn_C ZFP-57, zinc finger pro 27.6 18 0.0006 25.6 0.8 31 8-38 3-44 (60)
173 1x63_A Skeletal muscle LIM-pro 27.6 54 0.0019 23.9 3.6 42 241-291 15-56 (82)
174 2adr_A ADR1; transcription reg 27.6 25 0.00087 23.4 1.6 30 9-38 2-42 (60)
175 1x5w_A Zinc finger protein 64, 27.5 34 0.0011 23.7 2.3 32 7-38 7-49 (70)
176 1vq8_Z 50S ribosomal protein L 26.6 6.7 0.00023 30.5 -1.8 30 7-37 25-56 (83)
177 1x68_A FHL5 protein; four-and- 26.5 46 0.0016 24.1 3.0 41 242-290 6-47 (76)
178 3o70_A PHD finger protein 13; 26.3 16 0.00054 27.0 0.3 45 240-286 18-66 (68)
179 1ard_A Yeast transcription fac 26.2 22 0.00076 19.4 0.9 12 27-38 3-14 (29)
180 1p7a_A BF3, BKLF, kruppel-like 26.1 26 0.00087 20.7 1.3 13 26-38 11-23 (37)
181 3na7_A HP0958; flagellar bioge 26.1 17 0.00059 33.4 0.6 31 8-38 197-234 (256)
182 2eps_A POZ-, at HOOK-, and zin 26.1 66 0.0023 21.0 3.6 32 6-37 9-52 (54)
183 1x4k_A Skeletal muscle LIM-pro 25.5 49 0.0017 23.5 2.9 41 242-291 6-46 (72)
184 2o35_A Hypothetical protein DU 25.2 21 0.00071 28.8 0.8 12 265-276 42-53 (105)
185 3fyb_A Protein of unknown func 25.0 21 0.00072 28.7 0.8 12 265-276 41-52 (104)
186 2drp_A Protein (tramtrack DNA- 24.9 26 0.0009 23.8 1.3 32 7-38 8-52 (66)
187 1klr_A Zinc finger Y-chromosom 24.8 28 0.00097 18.9 1.2 12 27-38 3-14 (30)
188 2cuq_A Four and A half LIM dom 24.8 57 0.002 23.7 3.2 38 242-290 16-53 (80)
189 1znf_A 31ST zinc finger from X 24.6 25 0.00085 18.9 0.9 12 27-38 2-13 (27)
190 2d8y_A Eplin protein; LIM doma 24.6 1.2E+02 0.004 22.7 5.1 43 240-292 14-56 (91)
191 2eod_A TNF receptor-associated 24.6 50 0.0017 22.6 2.7 35 5-39 6-50 (66)
192 2jvm_A Uncharacterized protein 24.2 19 0.00066 27.8 0.4 16 25-40 52-67 (80)
193 1x6a_A LIMK-2, LIM domain kina 24.1 39 0.0013 24.7 2.2 38 242-290 16-53 (81)
194 2cur_A Skeletal muscle LIM-pro 23.8 41 0.0014 23.8 2.2 38 242-290 6-43 (69)
195 6rxn_A Rubredoxin; electron tr 23.7 52 0.0018 22.6 2.5 28 8-35 3-39 (46)
196 2l3k_A Rhombotin-2, linker, LI 23.6 40 0.0014 27.1 2.3 37 243-288 10-46 (123)
197 2jz8_A Uncharacterized protein 23.6 27 0.00092 27.4 1.2 17 24-40 46-62 (87)
198 2cot_A Zinc finger protein 435 23.5 37 0.0013 24.0 1.9 32 7-38 16-58 (77)
199 1wfh_A Zinc finger (AN1-like) 23.4 39 0.0013 25.0 1.9 28 7-38 13-40 (64)
200 2kn9_A Rubredoxin; metalloprot 23.2 64 0.0022 24.8 3.2 28 8-35 26-69 (81)
201 1paa_A Yeast transcription fac 22.9 28 0.00095 19.2 0.9 11 27-37 3-13 (30)
202 4gne_A Histone-lysine N-methyl 22.9 73 0.0025 25.6 3.7 45 239-289 13-64 (107)
203 1a7i_A QCRP2 (LIM1); LIM domai 22.7 38 0.0013 24.8 1.9 42 241-292 7-48 (81)
204 3h0g_I DNA-directed RNA polyme 22.6 49 0.0017 26.7 2.7 33 8-42 3-40 (113)
205 1loi_A Cyclic 3',5'-AMP specif 22.6 12 0.00043 22.1 -0.7 12 265-276 6-17 (26)
206 2k5c_A Uncharacterized protein 22.4 22 0.00076 27.6 0.5 11 27-37 52-62 (95)
207 2dmd_A Zinc finger protein 64, 22.3 39 0.0013 24.6 1.9 32 7-38 6-48 (96)
208 2kvh_A Zinc finger and BTB dom 22.2 21 0.00072 19.4 0.2 11 27-37 4-14 (27)
209 1s24_A Rubredoxin 2; electron 22.2 58 0.002 25.4 2.9 29 7-35 33-77 (87)
210 2dlo_A Thyroid receptor-intera 22.0 50 0.0017 24.2 2.4 40 241-291 15-54 (81)
211 2lvu_A Zinc finger and BTB dom 27.6 19 0.00065 19.5 0.0 13 27-39 3-15 (26)
212 2egq_A FHL1 protein; LIM domai 21.8 66 0.0023 23.1 3.1 42 242-291 16-59 (77)
213 1wfp_A Zinc finger (AN1-like) 21.6 39 0.0013 25.7 1.7 28 7-38 23-50 (74)
214 2yt9_A Zinc finger-containing 21.5 37 0.0013 24.7 1.6 32 7-38 5-47 (95)
215 1yk4_A Rubredoxin, RD; electro 21.5 59 0.002 22.8 2.5 26 9-34 2-43 (52)
216 3bvo_A CO-chaperone protein HS 20.9 44 0.0015 29.9 2.2 28 7-34 8-35 (207)
217 2ee8_A Protein ODD-skipped-rel 20.7 65 0.0022 23.9 2.9 31 8-38 16-57 (106)
218 3lpe_B DNA-directed RNA polyme 20.5 42 0.0014 24.3 1.6 18 12-34 4-21 (59)
219 3f6q_B LIM and senescent cell 20.5 66 0.0023 22.5 2.7 42 241-291 11-52 (72)
220 1rik_A E6APC1 peptide; E6-bind 20.1 25 0.00085 19.3 0.2 11 27-37 3-13 (29)
No 1
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=99.50 E-value=1.1e-14 Score=116.91 Aligned_cols=73 Identities=37% Similarity=0.994 Sum_probs=63.0
Q ss_pred CCCCCCcccHHHHHcCCccccc-------cCcccccccCCccCCCceEEcCCCCccchhchHHHHhcCCCCCCcCcccCC
Q 017252 218 NRYGTPPAQKEAVEAMPSVKIE-------ETLQCSVCLDDFEIGTEAKEMPCKHKFHSQCILPWLELHSSCPVCRCQLPA 290 (375)
Q Consensus 218 ~~~~~~~~~~~~v~~lp~~~~~-------~~~~C~ICle~~~~~~~~~~lpCgH~Fh~~Ci~~WL~~~~sCP~CR~~l~~ 290 (375)
......+++++.++.+|...+. +...|+||++.|..+..++.++|+|.||..||..|++.+.+||+||+.+..
T Consensus 10 ~~~~~~~~s~~~i~~lp~~~~~~~~~~~~~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 10 HMVANPPASKESIDALPEILVTEDHGAVGQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQKSGTCPVCRCMFPP 89 (91)
T ss_dssp CSSCCCCCCHHHHHTSCEEECCTTCSSSSSCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTTTCBCTTTCCBSSC
T ss_pred CCcCCCCCCHHHHHhCCCeeecccccccCCCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHcCCcCcCcCccCCC
Confidence 3556788899999999976554 356799999999877779999999999999999999999999999998864
No 2
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.39 E-value=3.3e-13 Score=104.53 Aligned_cols=58 Identities=43% Similarity=1.104 Sum_probs=50.7
Q ss_pred cccCcccccccCCccCCCceEEcCCCCccchhchHHHHhcCCCCCCcCcccCCCCCCC
Q 017252 238 IEETLQCSVCLDDFEIGTEAKEMPCKHKFHSQCILPWLELHSSCPVCRCQLPADEFKP 295 (375)
Q Consensus 238 ~~~~~~C~ICle~~~~~~~~~~lpCgH~Fh~~Ci~~WL~~~~sCP~CR~~l~~~~~~~ 295 (375)
..+...|+||++.|.....++.++|+|.||..||..|++.+.+||+||+.+......+
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~ 69 (78)
T 2ect_A 12 VGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSLTGQNTAT 69 (78)
T ss_dssp SSSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTTTCSCTTTCCCCCCSCSCC
T ss_pred CCCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHcCCcCcCcCCccCCcccCC
Confidence 3457899999999987778888999999999999999999999999999987765543
No 3
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.38 E-value=2.9e-13 Score=97.84 Aligned_cols=51 Identities=43% Similarity=1.078 Sum_probs=46.4
Q ss_pred ccCcccccccCCccCCCceEEcC-CCCccchhchHHHHhcCCCCCCcCcccC
Q 017252 239 EETLQCSVCLDDFEIGTEAKEMP-CKHKFHSQCILPWLELHSSCPVCRCQLP 289 (375)
Q Consensus 239 ~~~~~C~ICle~~~~~~~~~~lp-CgH~Fh~~Ci~~WL~~~~sCP~CR~~l~ 289 (375)
++...|+||++.|..+..+..++ |+|.||..||..|++.+.+||+||+.+.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~ 54 (55)
T 1iym_A 3 DDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV 54 (55)
T ss_dssp CCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred CCCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcCCcCcCCCCEeE
Confidence 45679999999998878889998 9999999999999999999999998874
No 4
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.37 E-value=1.5e-13 Score=105.89 Aligned_cols=52 Identities=37% Similarity=0.949 Sum_probs=46.9
Q ss_pred cCcccccccCCccCCCceEEcCCCCccchhchHHHHhcCCCCCCcCcccCCC
Q 017252 240 ETLQCSVCLDDFEIGTEAKEMPCKHKFHSQCILPWLELHSSCPVCRCQLPAD 291 (375)
Q Consensus 240 ~~~~C~ICle~~~~~~~~~~lpCgH~Fh~~Ci~~WL~~~~sCP~CR~~l~~~ 291 (375)
+...|+||++.|..+..++.++|+|.||..||..|++.+.+||+||+.+...
T Consensus 22 ~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~~ 73 (75)
T 1x4j_A 22 EQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRADSGPS 73 (75)
T ss_dssp SCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHHCSSCTTTCCCCCCC
T ss_pred CCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHcCCcCcCcCCcCCCC
Confidence 4678999999998777789999999999999999999999999999987643
No 5
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.35 E-value=8.7e-13 Score=99.77 Aligned_cols=53 Identities=34% Similarity=0.954 Sum_probs=47.7
Q ss_pred ccCcccccccCCccCCCceEEcCCCCccchhchHHHHhcCCCCCCcCcccCCC
Q 017252 239 EETLQCSVCLDDFEIGTEAKEMPCKHKFHSQCILPWLELHSSCPVCRCQLPAD 291 (375)
Q Consensus 239 ~~~~~C~ICle~~~~~~~~~~lpCgH~Fh~~Ci~~WL~~~~sCP~CR~~l~~~ 291 (375)
.....|+||++.|..+..++.++|+|.||..||..|+..+.+||+||+.+...
T Consensus 12 ~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 64 (69)
T 2kiz_A 12 DTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDIEAQ 64 (69)
T ss_dssp TCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHHCSBCTTTCSBSCSC
T ss_pred CCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHcCCCCcCcCccccCc
Confidence 44778999999998778889999999999999999999999999999988654
No 6
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.34 E-value=7.7e-13 Score=101.40 Aligned_cols=54 Identities=37% Similarity=0.934 Sum_probs=48.0
Q ss_pred ccccCcccccccCCccCCCceEEcCCCCccchhchHHHHhcCCCCCCcCcccCC
Q 017252 237 KIEETLQCSVCLDDFEIGTEAKEMPCKHKFHSQCILPWLELHSSCPVCRCQLPA 290 (375)
Q Consensus 237 ~~~~~~~C~ICle~~~~~~~~~~lpCgH~Fh~~Ci~~WL~~~~sCP~CR~~l~~ 290 (375)
.+.....|+||++.|......+.++|+|.||..||..|++.+.+||+||+.+..
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~~ 64 (74)
T 2ep4_A 11 ELNLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKVCPLCNMPVLQ 64 (74)
T ss_dssp CCCCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHCSBCTTTCCBCSS
T ss_pred cCCCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcCCcCCCcCccccc
Confidence 344578999999999888888888999999999999999999999999998854
No 7
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.28 E-value=1.4e-12 Score=98.74 Aligned_cols=57 Identities=28% Similarity=0.685 Sum_probs=47.5
Q ss_pred cccCcccccccCCccC----CCceEEcCCCCccchhchHHHHhcCCCCCCcCcccCCCCCC
Q 017252 238 IEETLQCSVCLDDFEI----GTEAKEMPCKHKFHSQCILPWLELHSSCPVCRCQLPADEFK 294 (375)
Q Consensus 238 ~~~~~~C~ICle~~~~----~~~~~~lpCgH~Fh~~Ci~~WL~~~~sCP~CR~~l~~~~~~ 294 (375)
..+...|+||++.+.. +..++.++|+|.||..||..|++.+.+||+||+.+......
T Consensus 7 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~ 67 (71)
T 3ng2_A 7 PSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRYH 67 (71)
T ss_dssp CTTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCCCSCC
T ss_pred CCCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcCCCCCCCCCccChhhee
Confidence 3457899999999943 23348899999999999999999999999999998766554
No 8
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.27 E-value=3.7e-12 Score=97.37 Aligned_cols=55 Identities=22% Similarity=0.573 Sum_probs=47.4
Q ss_pred ccccCcccccccCCccCCCceEEc-CCCCccchhchHHHHhcCCCCCCcCcccCCCCCC
Q 017252 237 KIEETLQCSVCLDDFEIGTEAKEM-PCKHKFHSQCILPWLELHSSCPVCRCQLPADEFK 294 (375)
Q Consensus 237 ~~~~~~~C~ICle~~~~~~~~~~l-pCgH~Fh~~Ci~~WL~~~~sCP~CR~~l~~~~~~ 294 (375)
.+.+.+.|+||++.+ ..++.+ +|+|.||..||..|++.+..||+||+.+....+.
T Consensus 11 ~~~~~~~C~IC~~~~---~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~ 66 (72)
T 2djb_A 11 ELTPYILCSICKGYL---IDATTITECLHTFCKSCIVRHFYYSNRCPKCNIVVHQTQPL 66 (72)
T ss_dssp CCCGGGSCTTTSSCC---SSCEECSSSCCEECHHHHHHHHHHCSSCTTTCCCCCSSCSC
T ss_pred hcCCCCCCCCCChHH---HCcCEECCCCCHHHHHHHHHHHHcCCcCCCcCcccCccccc
Confidence 445678999999999 667776 8999999999999999999999999998765544
No 9
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.26 E-value=2.2e-12 Score=96.92 Aligned_cols=54 Identities=28% Similarity=0.631 Sum_probs=45.0
Q ss_pred ccccCcccccccCCccCC----CceEEcCCCCccchhchHHHHhcCCCCCCcCcccCC
Q 017252 237 KIEETLQCSVCLDDFEIG----TEAKEMPCKHKFHSQCILPWLELHSSCPVCRCQLPA 290 (375)
Q Consensus 237 ~~~~~~~C~ICle~~~~~----~~~~~lpCgH~Fh~~Ci~~WL~~~~sCP~CR~~l~~ 290 (375)
.+.+...|+||++.|... ..++.++|+|.||..||..|+..+..||+||+.+..
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 11 RPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH 68 (69)
T ss_dssp CTTCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHHCSSCTTTCCCCCC
T ss_pred CCCCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHcCCCCCCCCCccCc
Confidence 345678999999999432 234889999999999999999999999999998753
No 10
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.25 E-value=4.4e-12 Score=91.39 Aligned_cols=50 Identities=28% Similarity=0.681 Sum_probs=43.3
Q ss_pred cCcccccccCCccCC-CceEEcCCCCccchhchHHHHhcCCCCCCcCcccC
Q 017252 240 ETLQCSVCLDDFEIG-TEAKEMPCKHKFHSQCILPWLELHSSCPVCRCQLP 289 (375)
Q Consensus 240 ~~~~C~ICle~~~~~-~~~~~lpCgH~Fh~~Ci~~WL~~~~sCP~CR~~l~ 289 (375)
+...|+||++.|..+ ..++.++|+|.||..||..|+....+||+||+.+.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLCSGPSS 54 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHTCCCTTSCCSSC
T ss_pred CCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcCCcCCCCCCcCC
Confidence 357899999999543 35788899999999999999999999999998874
No 11
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=99.23 E-value=6.3e-12 Score=104.12 Aligned_cols=52 Identities=21% Similarity=0.613 Sum_probs=42.0
Q ss_pred cCcccccccCCccCCC---------------ceEEcCCCCccchhchHHHHh-----cCCCCCCcCcccCCC
Q 017252 240 ETLQCSVCLDDFEIGT---------------EAKEMPCKHKFHSQCILPWLE-----LHSSCPVCRCQLPAD 291 (375)
Q Consensus 240 ~~~~C~ICle~~~~~~---------------~~~~lpCgH~Fh~~Ci~~WL~-----~~~sCP~CR~~l~~~ 291 (375)
.+..|+||++.|.... ..+.++|+|.||..||..||. .+.+||+||+.+...
T Consensus 24 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~ 95 (114)
T 1v87_A 24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEK 95 (114)
T ss_dssp CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSC
T ss_pred CCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCCC
Confidence 4578999999995432 334788999999999999994 467899999988644
No 12
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.23 E-value=9.5e-12 Score=95.76 Aligned_cols=52 Identities=29% Similarity=0.625 Sum_probs=44.8
Q ss_pred ccccCcccccccCCccCCCceEEcC-CCCccchhchHHHHhcC--CCCCCcCcccCCC
Q 017252 237 KIEETLQCSVCLDDFEIGTEAKEMP-CKHKFHSQCILPWLELH--SSCPVCRCQLPAD 291 (375)
Q Consensus 237 ~~~~~~~C~ICle~~~~~~~~~~lp-CgH~Fh~~Ci~~WL~~~--~sCP~CR~~l~~~ 291 (375)
.+.+.+.|+||++.| ..++.++ |+|.||..||..|+..+ ..||+||+.+...
T Consensus 11 ~~~~~~~C~IC~~~~---~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~ 65 (74)
T 2yur_A 11 PIPDELLCLICKDIM---TDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSP 65 (74)
T ss_dssp CSCGGGSCSSSCCCC---TTCEECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCCT
T ss_pred cCCCCCCCcCCChHH---hCCeEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCCc
Confidence 445688999999999 7889999 99999999999999865 6899999975443
No 13
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.22 E-value=1e-11 Score=94.59 Aligned_cols=53 Identities=28% Similarity=0.692 Sum_probs=45.6
Q ss_pred ccccCcccccccCCccCCCceEEcCCCCccchhchHHHHh---cCCCCCCcCcccCCCC
Q 017252 237 KIEETLQCSVCLDDFEIGTEAKEMPCKHKFHSQCILPWLE---LHSSCPVCRCQLPADE 292 (375)
Q Consensus 237 ~~~~~~~C~ICle~~~~~~~~~~lpCgH~Fh~~Ci~~WL~---~~~sCP~CR~~l~~~~ 292 (375)
.+.+...|+||++.+ ..++.++|+|.||..||..|++ ....||+||+.+....
T Consensus 16 ~~~~~~~C~IC~~~~---~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~ 71 (73)
T 2ysl_A 16 KLQEEVICPICLDIL---QKPVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRKNA 71 (73)
T ss_dssp CCCCCCBCTTTCSBC---SSEEECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCCC
T ss_pred hCccCCEeccCCccc---CCeEEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCccc
Confidence 345678999999999 7889999999999999999997 4558999999887554
No 14
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.22 E-value=5.1e-12 Score=96.36 Aligned_cols=50 Identities=30% Similarity=0.708 Sum_probs=45.0
Q ss_pred ccCcccccccCCccCCCceEEcCCCCccchhchHHHHhcCCCCCCcCcccCCC
Q 017252 239 EETLQCSVCLDDFEIGTEAKEMPCKHKFHSQCILPWLELHSSCPVCRCQLPAD 291 (375)
Q Consensus 239 ~~~~~C~ICle~~~~~~~~~~lpCgH~Fh~~Ci~~WL~~~~sCP~CR~~l~~~ 291 (375)
.+...|+||++.+ ..++.++|+|.||..||..|+.....||+||..+...
T Consensus 13 ~~~~~C~IC~~~~---~~~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 62 (71)
T 2d8t_A 13 LTVPECAICLQTC---VHPVSLPCKHVFCYLCVKGASWLGKRCALCRQEIPED 62 (71)
T ss_dssp SSCCBCSSSSSBC---SSEEEETTTEEEEHHHHHHCTTCSSBCSSSCCBCCHH
T ss_pred CCCCCCccCCccc---CCCEEccCCCHHHHHHHHHHHHCCCcCcCcCchhCHh
Confidence 4578899999999 7789999999999999999999999999999988644
No 15
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.21 E-value=6.9e-12 Score=97.01 Aligned_cols=55 Identities=18% Similarity=0.481 Sum_probs=47.9
Q ss_pred ccccCcccccccCCccCCCceEEcCCCCccchhchHHHHhc-CCCCCCcCcccCCCCCC
Q 017252 237 KIEETLQCSVCLDDFEIGTEAKEMPCKHKFHSQCILPWLEL-HSSCPVCRCQLPADEFK 294 (375)
Q Consensus 237 ~~~~~~~C~ICle~~~~~~~~~~lpCgH~Fh~~Ci~~WL~~-~~sCP~CR~~l~~~~~~ 294 (375)
.+.+.+.|+||++.| ..++.++|||.||..||..|+.. +.+||+||..+....+.
T Consensus 4 ~~~~~~~C~IC~~~~---~~Pv~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~~~l~ 59 (78)
T 1t1h_A 4 EFPEYFRCPISLELM---KDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLT 59 (78)
T ss_dssp CCSSSSSCTTTSCCC---SSEEEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSSCCCE
T ss_pred CCcccCCCCCccccc---cCCEEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCChhhCc
Confidence 345688999999999 88999999999999999999986 77899999998765544
No 16
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.19 E-value=1.6e-11 Score=96.56 Aligned_cols=57 Identities=25% Similarity=0.568 Sum_probs=47.2
Q ss_pred cccccCcccccccCCccCCCc-eEEcCCCCccchhchHHHHhcC---CCCCCcCcccCCCC
Q 017252 236 VKIEETLQCSVCLDDFEIGTE-AKEMPCKHKFHSQCILPWLELH---SSCPVCRCQLPADE 292 (375)
Q Consensus 236 ~~~~~~~~C~ICle~~~~~~~-~~~lpCgH~Fh~~Ci~~WL~~~---~sCP~CR~~l~~~~ 292 (375)
..+.+...|+||++.|..... ++.++|+|.||..||..|+..+ ..||+||..+....
T Consensus 10 ~~~~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~ 70 (88)
T 2ct2_A 10 DALREVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRITS 70 (88)
T ss_dssp CCCCSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCSS
T ss_pred hhccCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccchh
Confidence 345567899999999954332 8899999999999999999876 68999999886553
No 17
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.19 E-value=3.9e-12 Score=94.09 Aligned_cols=54 Identities=26% Similarity=0.651 Sum_probs=45.1
Q ss_pred cCcccccccCCccCC----CceEEcCCCCccchhchHHHHhcCCCCCCcCcccCCCCC
Q 017252 240 ETLQCSVCLDDFEIG----TEAKEMPCKHKFHSQCILPWLELHSSCPVCRCQLPADEF 293 (375)
Q Consensus 240 ~~~~C~ICle~~~~~----~~~~~lpCgH~Fh~~Ci~~WL~~~~sCP~CR~~l~~~~~ 293 (375)
+...|+||++.+... ..++.++|+|.||..||..|++.+.+||+||+.+.....
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 59 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRY 59 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHHCSBCTTTCCBCTTTCE
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHcCCCCCCCCccCCccce
Confidence 357899999999432 334788999999999999999999999999998876543
No 18
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.18 E-value=1e-11 Score=93.27 Aligned_cols=53 Identities=23% Similarity=0.617 Sum_probs=45.0
Q ss_pred ccccCcccccccCCccCCCceEEcCCCCccchhchHHHHh-cCCCCCCcCcccCCCC
Q 017252 237 KIEETLQCSVCLDDFEIGTEAKEMPCKHKFHSQCILPWLE-LHSSCPVCRCQLPADE 292 (375)
Q Consensus 237 ~~~~~~~C~ICle~~~~~~~~~~lpCgH~Fh~~Ci~~WL~-~~~sCP~CR~~l~~~~ 292 (375)
.+.+.+.|+||++.+ ..++.++|+|.||..||..|+. ....||+||+.+..+.
T Consensus 11 ~~~~~~~C~IC~~~~---~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~ 64 (66)
T 2ecy_A 11 TVEDKYKCEKCHLVL---CSPKQTECGHRFCESCMAALLSSSSPKCTACQESIVKDK 64 (66)
T ss_dssp SCCCCEECTTTCCEE---SSCCCCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCTTT
T ss_pred cCCcCCCCCCCChHh---cCeeECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCChhh
Confidence 345678999999999 6677789999999999999994 5668999999887654
No 19
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.18 E-value=6.3e-12 Score=108.16 Aligned_cols=50 Identities=38% Similarity=0.909 Sum_probs=45.0
Q ss_pred ccCcccccccCCccCCCceEEcCCCCccchhchHHHHhcCCCCCCcCcccCCC
Q 017252 239 EETLQCSVCLDDFEIGTEAKEMPCKHKFHSQCILPWLELHSSCPVCRCQLPAD 291 (375)
Q Consensus 239 ~~~~~C~ICle~~~~~~~~~~lpCgH~Fh~~Ci~~WL~~~~sCP~CR~~l~~~ 291 (375)
.+++.|+||++.| ..++.++|||.||..||..|+..+.+||+||+.+...
T Consensus 51 ~~~~~C~iC~~~~---~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 100 (138)
T 4ayc_A 51 ENELQCIICSEYF---IEAVTLNCAHSFCSYCINEWMKRKIECPICRKDIKSK 100 (138)
T ss_dssp HHHSBCTTTCSBC---SSEEEETTSCEEEHHHHHHHTTTCSBCTTTCCBCCCE
T ss_pred cccCCCcccCccc---CCceECCCCCCccHHHHHHHHHcCCcCCCCCCcCCCC
Confidence 3467899999999 7889999999999999999999999999999988643
No 20
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.17 E-value=1.8e-11 Score=95.20 Aligned_cols=55 Identities=35% Similarity=0.768 Sum_probs=47.0
Q ss_pred ccccCcccccccCCccCCCceEEcCCCCccchhchHHHHhc------CCCCCCcCcccCCCCCC
Q 017252 237 KIEETLQCSVCLDDFEIGTEAKEMPCKHKFHSQCILPWLEL------HSSCPVCRCQLPADEFK 294 (375)
Q Consensus 237 ~~~~~~~C~ICle~~~~~~~~~~lpCgH~Fh~~Ci~~WL~~------~~sCP~CR~~l~~~~~~ 294 (375)
.+.+.+.|+||++.| ..++.++|+|.||..||..|+.. ...||+||..+....+.
T Consensus 15 ~~~~~~~C~IC~~~~---~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~ 75 (85)
T 2ecw_A 15 MIKEEVTCPICLELL---KEPVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFGNLK 75 (85)
T ss_dssp CCCTTTSCTTTCSCC---SSCEECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTTCCE
T ss_pred hCccCCCCcCCChhh---CcceeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHHhCC
Confidence 345678999999999 77889999999999999999987 66899999988765443
No 21
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.17 E-value=1.7e-11 Score=95.63 Aligned_cols=48 Identities=23% Similarity=0.594 Sum_probs=44.1
Q ss_pred ccCcccccccCCccCCCceEEcCCCCccchhchHHHHhcCCCCCCcCcccC
Q 017252 239 EETLQCSVCLDDFEIGTEAKEMPCKHKFHSQCILPWLELHSSCPVCRCQLP 289 (375)
Q Consensus 239 ~~~~~C~ICle~~~~~~~~~~lpCgH~Fh~~Ci~~WL~~~~sCP~CR~~l~ 289 (375)
...+.|+||++.| ..++.++|+|.||..||..|+.....||+||..+.
T Consensus 13 ~~~~~C~IC~~~~---~~p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 60 (81)
T 2csy_A 13 EIPFRCFICRQAF---QNPVVTKCRHYFCESCALEHFRATPRCYICDQPTG 60 (81)
T ss_dssp CCCSBCSSSCSBC---CSEEECTTSCEEEHHHHHHHHHHCSBCSSSCCBCC
T ss_pred CCCCCCcCCCchh---cCeeEccCCCHhHHHHHHHHHHCCCcCCCcCcccc
Confidence 4478999999999 77889999999999999999999999999999886
No 22
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.15 E-value=2.8e-11 Score=94.16 Aligned_cols=55 Identities=29% Similarity=0.760 Sum_probs=47.1
Q ss_pred ccccCcccccccCCccCCCceEEcCCCCccchhchHHHHhc------CCCCCCcCcccCCCCCC
Q 017252 237 KIEETLQCSVCLDDFEIGTEAKEMPCKHKFHSQCILPWLEL------HSSCPVCRCQLPADEFK 294 (375)
Q Consensus 237 ~~~~~~~C~ICle~~~~~~~~~~lpCgH~Fh~~Ci~~WL~~------~~sCP~CR~~l~~~~~~ 294 (375)
.+.+...|+||++.+ ..++.++|+|.||..||..|+.. ...||+||..+....+.
T Consensus 15 ~~~~~~~C~IC~~~~---~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~ 75 (85)
T 2ecv_A 15 NVKEEVTCPICLELL---TQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPENIR 75 (85)
T ss_dssp CCCCCCCCTTTCSCC---SSCBCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSSSCC
T ss_pred HccCCCCCCCCCccc---CCceeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHHhcC
Confidence 345678999999999 67788999999999999999987 77899999998765544
No 23
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.15 E-value=8.4e-12 Score=98.07 Aligned_cols=50 Identities=22% Similarity=0.600 Sum_probs=41.1
Q ss_pred CcccccccCCccC-----------CCceEEcC-CCCccchhchHHHHhcCCCCCCcCcccCC
Q 017252 241 TLQCSVCLDDFEI-----------GTEAKEMP-CKHKFHSQCILPWLELHSSCPVCRCQLPA 290 (375)
Q Consensus 241 ~~~C~ICle~~~~-----------~~~~~~lp-CgH~Fh~~Ci~~WL~~~~sCP~CR~~l~~ 290 (375)
+..|+||++.|.. +..++.++ |+|.||..||.+||+.+.+||+||+.+..
T Consensus 15 ~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~ 76 (81)
T 2ecl_A 15 CDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWVV 76 (81)
T ss_dssp CSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCCBCTTTCCBCCE
T ss_pred CCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCCCCCCcCCCcch
Confidence 5678888888843 33355665 99999999999999999999999998753
No 24
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.15 E-value=7.8e-12 Score=94.71 Aligned_cols=51 Identities=31% Similarity=0.928 Sum_probs=44.6
Q ss_pred cccCcccccccCCccCCCceEEcCCCCccchhchHHHHhcCCCCCCcCcccCCCC
Q 017252 238 IEETLQCSVCLDDFEIGTEAKEMPCKHKFHSQCILPWLELHSSCPVCRCQLPADE 292 (375)
Q Consensus 238 ~~~~~~C~ICle~~~~~~~~~~lpCgH~Fh~~Ci~~WL~~~~sCP~CR~~l~~~~ 292 (375)
+.+...|+||++.+ .. +.++|+|.||..||..|+..+..||+||+.+....
T Consensus 12 ~~~~~~C~IC~~~~---~~-~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 62 (70)
T 2ecn_A 12 LTDEEECCICMDGR---AD-LILPCAHSFCQKCIDKWSDRHRNCPICRLQMTGAN 62 (70)
T ss_dssp CCCCCCCSSSCCSC---CS-EEETTTEEECHHHHHHSSCCCSSCHHHHHCTTCCC
T ss_pred CCCCCCCeeCCcCc---cC-cccCCCCcccHHHHHHHHHCcCcCCCcCCcccCCC
Confidence 34578999999999 44 88999999999999999999999999999887544
No 25
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.15 E-value=8.9e-12 Score=101.57 Aligned_cols=53 Identities=30% Similarity=0.760 Sum_probs=46.1
Q ss_pred cccCcccccccCCccCCCceEE-cCCCCccchhchHHHHhcC-CCCCCcCcccCCCCC
Q 017252 238 IEETLQCSVCLDDFEIGTEAKE-MPCKHKFHSQCILPWLELH-SSCPVCRCQLPADEF 293 (375)
Q Consensus 238 ~~~~~~C~ICle~~~~~~~~~~-lpCgH~Fh~~Ci~~WL~~~-~sCP~CR~~l~~~~~ 293 (375)
+.+.+.|+||++.| ..++. ++|||.||..||..|+... ..||+||..+....+
T Consensus 19 l~~~~~C~IC~~~~---~~p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~l 73 (100)
T 3lrq_A 19 IAEVFRCFICMEKL---RDARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQLREL 73 (100)
T ss_dssp HHHHTBCTTTCSBC---SSEEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGC
T ss_pred CCCCCCCccCCccc---cCccccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCCHHHh
Confidence 34578999999999 77888 9999999999999999887 689999999865443
No 26
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.14 E-value=2.2e-11 Score=91.61 Aligned_cols=48 Identities=29% Similarity=0.870 Sum_probs=42.1
Q ss_pred cCcccccccCCccCCCceEEcCCCCccchhchHHHHhcCCCCCCcCcccC
Q 017252 240 ETLQCSVCLDDFEIGTEAKEMPCKHKFHSQCILPWLELHSSCPVCRCQLP 289 (375)
Q Consensus 240 ~~~~C~ICle~~~~~~~~~~lpCgH~Fh~~Ci~~WL~~~~sCP~CR~~l~ 289 (375)
....|+||++.+. ..++.++|+|.||..||..|++.+.+||+||+.+.
T Consensus 4 ~~~~C~IC~~~~~--~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~ 51 (68)
T 1chc_A 4 VAERCPICLEDPS--NYSMALPCLHAFCYVCITRWIRQNPTCPLCKVPVE 51 (68)
T ss_dssp CCCCCSSCCSCCC--SCEEETTTTEEESTTHHHHHHHHSCSTTTTCCCCC
T ss_pred CCCCCeeCCcccc--CCcEecCCCCeeHHHHHHHHHhCcCcCcCCChhhH
Confidence 4678999999993 23588999999999999999999999999998875
No 27
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.13 E-value=8.9e-12 Score=96.24 Aligned_cols=53 Identities=30% Similarity=0.681 Sum_probs=45.6
Q ss_pred ccccCcccccccCCccCCCceEEcCCCCccchhchHHHHhc-------CCCCCCcCcccCCCC
Q 017252 237 KIEETLQCSVCLDDFEIGTEAKEMPCKHKFHSQCILPWLEL-------HSSCPVCRCQLPADE 292 (375)
Q Consensus 237 ~~~~~~~C~ICle~~~~~~~~~~lpCgH~Fh~~Ci~~WL~~-------~~sCP~CR~~l~~~~ 292 (375)
.+.+.+.|+||++.| ..++.++|||.||..||..|+.. ...||+||..+....
T Consensus 8 ~~~~~~~C~IC~~~~---~~p~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~~ 67 (79)
T 2egp_A 8 NVQEEVTCPICLELL---TEPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFEH 67 (79)
T ss_dssp CCCCCCEETTTTEEC---SSCCCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSSG
T ss_pred hcccCCCCcCCCccc---CCeeECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHhh
Confidence 455688999999999 67788999999999999999986 568999999887543
No 28
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=99.12 E-value=3.2e-11 Score=100.00 Aligned_cols=49 Identities=24% Similarity=0.549 Sum_probs=42.0
Q ss_pred CcccccccCCccCCC---------------ceEEcCCCCccchhchHHHHhcCCCCCCcCcccC
Q 017252 241 TLQCSVCLDDFEIGT---------------EAKEMPCKHKFHSQCILPWLELHSSCPVCRCQLP 289 (375)
Q Consensus 241 ~~~C~ICle~~~~~~---------------~~~~lpCgH~Fh~~Ci~~WL~~~~sCP~CR~~l~ 289 (375)
+..|+||++.|.... .++.++|+|.||..||.+||..+.+||+||+.+.
T Consensus 37 ~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~ 100 (106)
T 3dpl_R 37 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWE 100 (106)
T ss_dssp SCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTCSBCSSSCSBCC
T ss_pred CCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHcCCcCcCCCCcce
Confidence 678999999996431 2567889999999999999999999999999764
No 29
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.10 E-value=5.7e-11 Score=88.17 Aligned_cols=45 Identities=33% Similarity=0.777 Sum_probs=39.7
Q ss_pred ccccCcccccccCCccCCCceEEcCCCCccchhchHHHHh---cCCCCCCc
Q 017252 237 KIEETLQCSVCLDDFEIGTEAKEMPCKHKFHSQCILPWLE---LHSSCPVC 284 (375)
Q Consensus 237 ~~~~~~~C~ICle~~~~~~~~~~lpCgH~Fh~~Ci~~WL~---~~~sCP~C 284 (375)
.+.+.+.|+||++.| ..++.++|+|.||..||..|++ ....||+|
T Consensus 16 ~~~~~~~C~IC~~~~---~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 16 KLQEEVICPICLDIL---QKPVTIDCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCCCBCTTTCSBC---SSCEECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred hCccCCCCCcCCchh---CCeEEeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 455688999999999 7889999999999999999998 45589998
No 30
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.09 E-value=3.9e-11 Score=101.05 Aligned_cols=49 Identities=31% Similarity=0.637 Sum_probs=43.8
Q ss_pred ccCcccccccCCccCCCceEEcCCCCccchhchHHHHhcCC-CCCCcCcccCC
Q 017252 239 EETLQCSVCLDDFEIGTEAKEMPCKHKFHSQCILPWLELHS-SCPVCRCQLPA 290 (375)
Q Consensus 239 ~~~~~C~ICle~~~~~~~~~~lpCgH~Fh~~Ci~~WL~~~~-sCP~CR~~l~~ 290 (375)
.+.+.|+||++.| ..++.++|||.||..||..|+.... .||+||..+..
T Consensus 50 ~~~~~C~IC~~~~---~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 50 EETFQCICCQELV---FRPITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGR 99 (124)
T ss_dssp HHHTBCTTTSSBC---SSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred ccCCCCCcCChHH---cCcEEeeCCCcccHHHHHHHHhHCcCCCCCCCccCCC
Confidence 4578999999999 7899999999999999999998544 89999999876
No 31
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.08 E-value=2.5e-11 Score=98.23 Aligned_cols=52 Identities=27% Similarity=0.790 Sum_probs=45.3
Q ss_pred ccCcccccccCCccCCCceEEc-CCCCccchhchHHHHhcCCCCCCcCcccCCCCC
Q 017252 239 EETLQCSVCLDDFEIGTEAKEM-PCKHKFHSQCILPWLELHSSCPVCRCQLPADEF 293 (375)
Q Consensus 239 ~~~~~C~ICle~~~~~~~~~~l-pCgH~Fh~~Ci~~WL~~~~sCP~CR~~l~~~~~ 293 (375)
.+.+.|+||++.| ..++.+ +|||.||..||..|+..+..||+||..+....+
T Consensus 20 ~~~~~C~IC~~~~---~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~l 72 (99)
T 2y43_A 20 DDLLRCGICFEYF---NIAMIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTVTEPDL 72 (99)
T ss_dssp HHHTBCTTTCSBC---SSEEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCGGGC
T ss_pred CCCCCcccCChhh---CCcCEECCCCCHhhHHHHHHHHHCCCCCCCCCCcCChhhC
Confidence 3468999999999 678887 899999999999999988999999998875443
No 32
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.07 E-value=6e-11 Score=94.49 Aligned_cols=50 Identities=30% Similarity=0.648 Sum_probs=43.7
Q ss_pred ccccCcccccccCCccCCCceEEcC-CCCccchhchHHHHhcC--CCCCCcCcccC
Q 017252 237 KIEETLQCSVCLDDFEIGTEAKEMP-CKHKFHSQCILPWLELH--SSCPVCRCQLP 289 (375)
Q Consensus 237 ~~~~~~~C~ICle~~~~~~~~~~lp-CgH~Fh~~Ci~~WL~~~--~sCP~CR~~l~ 289 (375)
.+.+.+.|+||++.| ..++.++ |||.||..||..|+... ..||+||..+.
T Consensus 9 ~~~~~~~C~IC~~~~---~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 61 (92)
T 3ztg_A 9 PIPDELLCLICKDIM---TDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDV 61 (92)
T ss_dssp CCCTTTEETTTTEEC---SSCEECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSC
T ss_pred cCCcCCCCCCCChhh---cCceECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCC
Confidence 345688999999999 7889999 99999999999999754 58999999873
No 33
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=99.06 E-value=6.2e-11 Score=94.11 Aligned_cols=56 Identities=16% Similarity=0.185 Sum_probs=49.6
Q ss_pred cccCcccccccCCccCCCceEEcCCCCccchhchHHHHhcCCCCCCcCcccCCCCCCCc
Q 017252 238 IEETLQCSVCLDDFEIGTEAKEMPCKHKFHSQCILPWLELHSSCPVCRCQLPADEFKPE 296 (375)
Q Consensus 238 ~~~~~~C~ICle~~~~~~~~~~lpCgH~Fh~~Ci~~WL~~~~sCP~CR~~l~~~~~~~~ 296 (375)
+.+.+.|+||++.| ..++.++|||.||..||..||..+.+||+|+..+....+.+.
T Consensus 11 ~p~~~~CpI~~~~m---~dPV~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~~l~pn 66 (85)
T 2kr4_A 11 APDEFRDPLMDTLM---TDPVRLPSGTVMDRSIILRHLLNSPTDPFNRQMLTESMLEPV 66 (85)
T ss_dssp CCTTTBCTTTCSBC---SSEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCGGGCEEC
T ss_pred CchheECcccCchh---cCCeECCCCCEECHHHHHHHHhcCCCCCCCcCCCChHhcchH
Confidence 44689999999999 999999999999999999999988999999999876655543
No 34
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.06 E-value=6.7e-11 Score=97.25 Aligned_cols=52 Identities=31% Similarity=0.768 Sum_probs=45.9
Q ss_pred ccccCcccccccCCccCCCceEEc-CCCCccchhchHHHHhcCCCCCCcCcccCCC
Q 017252 237 KIEETLQCSVCLDDFEIGTEAKEM-PCKHKFHSQCILPWLELHSSCPVCRCQLPAD 291 (375)
Q Consensus 237 ~~~~~~~C~ICle~~~~~~~~~~l-pCgH~Fh~~Ci~~WL~~~~sCP~CR~~l~~~ 291 (375)
.+.+.+.|+||++.| ..++.+ +|||.||..||..|+.....||+||..+...
T Consensus 11 ~~~~~~~C~IC~~~~---~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 63 (108)
T 2ckl_A 11 ELNPHLMCVLCGGYF---IDATTIIECLHSFCKTCIVRYLETSKYCPICDVQVHKT 63 (108)
T ss_dssp HHGGGTBCTTTSSBC---SSEEEETTTCCEEEHHHHHHHHTSCSBCTTTCCBSCSS
T ss_pred ccCCcCCCccCChHH---hCcCEeCCCCChhhHHHHHHHHHhCCcCcCCCcccccc
Confidence 345678999999999 778887 9999999999999999889999999988754
No 35
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.04 E-value=1.6e-10 Score=91.03 Aligned_cols=53 Identities=19% Similarity=0.584 Sum_probs=43.7
Q ss_pred ccCcccccccCCccCCCceEEcCCC-----CccchhchHHHHhcC--CCCCCcCcccCCCC
Q 017252 239 EETLQCSVCLDDFEIGTEAKEMPCK-----HKFHSQCILPWLELH--SSCPVCRCQLPADE 292 (375)
Q Consensus 239 ~~~~~C~ICle~~~~~~~~~~lpCg-----H~Fh~~Ci~~WL~~~--~sCP~CR~~l~~~~ 292 (375)
.+...|.||++.+..+.. .++||+ |.||..||.+||..+ .+||+||+.+....
T Consensus 13 ~~~~~C~IC~~~~~~~~~-l~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~~~ 72 (80)
T 2d8s_A 13 SSQDICRICHCEGDDESP-LITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIMET 72 (80)
T ss_dssp TTSCCCSSSCCCCCSSSC-EECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCCCC
T ss_pred CCCCCCeEcCccccCCCe-eEeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeecCc
Confidence 346789999999876554 579996 999999999999865 48999999987654
No 36
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=99.03 E-value=1.3e-10 Score=94.87 Aligned_cols=58 Identities=16% Similarity=0.222 Sum_probs=51.2
Q ss_pred cccCcccccccCCccCCCceEEcCCC-CccchhchHHHHhcCCCCCCcCcccCCCCCCCchh
Q 017252 238 IEETLQCSVCLDDFEIGTEAKEMPCK-HKFHSQCILPWLELHSSCPVCRCQLPADEFKPESE 298 (375)
Q Consensus 238 ~~~~~~C~ICle~~~~~~~~~~lpCg-H~Fh~~Ci~~WL~~~~sCP~CR~~l~~~~~~~~~~ 298 (375)
+.+.+.|+||++.| .+|+.++|| |.||..||..||..+.+||+|+..|....+.+...
T Consensus 19 ~p~~~~CpI~~~~m---~dPV~~~cG~htf~r~cI~~~l~~~~~cP~~~~~l~~~~L~pn~~ 77 (98)
T 1wgm_A 19 ACDEFLDPIMSTLM---CDPVVLPSSRVTVDRSTIARHLLSDQTDPFNRSPLTMDQIRPNTE 77 (98)
T ss_dssp CCTTTBCTTTCSBC---SSEEECTTTCCEEEHHHHHHHTTTSCBCTTTCSBCCTTTSEECHH
T ss_pred CcHhcCCcCccccc---cCCeECCCCCeEECHHHHHHHHHhCCCCCCCCCCCChhhceEcHH
Confidence 44688999999999 999999999 99999999999998889999999998776665443
No 37
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=99.03 E-value=1.2e-10 Score=95.31 Aligned_cols=58 Identities=16% Similarity=0.187 Sum_probs=51.0
Q ss_pred ccccCcccccccCCccCCCceEEcCCCCccchhchHHHHhcCCCCCCcCcccCCCCCCCch
Q 017252 237 KIEETLQCSVCLDDFEIGTEAKEMPCKHKFHSQCILPWLELHSSCPVCRCQLPADEFKPES 297 (375)
Q Consensus 237 ~~~~~~~C~ICle~~~~~~~~~~lpCgH~Fh~~Ci~~WL~~~~sCP~CR~~l~~~~~~~~~ 297 (375)
.+.+.+.|+||++.| ..|+.++|||.||..||..||..+.+||+|+..+....+.+..
T Consensus 25 ~~p~~~~CpI~~~~m---~dPV~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~~L~pn~ 82 (100)
T 2kre_A 25 DAPDEFRDPLMDTLM---TDPVRLPSGTIMDRSIILRHLLNSPTDPFNRQTLTESMLEPVP 82 (100)
T ss_dssp SCSTTTBCTTTCSBC---SSEEEETTTEEEEHHHHHHHTTSCSBCSSSCCBCCTTSSEECH
T ss_pred cCcHhhCCcCccCcc---cCCeECCCCCEEchHHHHHHHHcCCCCCCCCCCCChhhceECH
Confidence 344589999999999 9999999999999999999999888999999999877665544
No 38
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.02 E-value=1.1e-10 Score=84.69 Aligned_cols=45 Identities=38% Similarity=0.899 Sum_probs=38.4
Q ss_pred ccccCcccccccCCccCCCceEEcCCCCccchhchHHHHh---cCCCCCCc
Q 017252 237 KIEETLQCSVCLDDFEIGTEAKEMPCKHKFHSQCILPWLE---LHSSCPVC 284 (375)
Q Consensus 237 ~~~~~~~C~ICle~~~~~~~~~~lpCgH~Fh~~Ci~~WL~---~~~sCP~C 284 (375)
.+.+...|+||++.+ ..++.++|+|.||..||..|+. ....||+|
T Consensus 11 ~~~~~~~C~IC~~~~---~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 11 NLQVEASCSVCLEYL---KEPVIIECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CSCCCCBCSSSCCBC---SSCCCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred ccccCCCCccCCccc---CccEeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 345678999999999 6678899999999999999954 56689998
No 39
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.02 E-value=8.9e-11 Score=96.46 Aligned_cols=53 Identities=26% Similarity=0.752 Sum_probs=45.0
Q ss_pred ccCcccccccCCccCCCceEEcCCCCccchhchHHHHhcCC---CCCCcCcccCCCCCC
Q 017252 239 EETLQCSVCLDDFEIGTEAKEMPCKHKFHSQCILPWLELHS---SCPVCRCQLPADEFK 294 (375)
Q Consensus 239 ~~~~~C~ICle~~~~~~~~~~lpCgH~Fh~~Ci~~WL~~~~---sCP~CR~~l~~~~~~ 294 (375)
.+...|+||++.+ ..++.++|||.||..||..|+.... .||+||..+....+.
T Consensus 19 ~~~~~C~IC~~~~---~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~~ 74 (112)
T 1jm7_A 19 QKILECPICLELI---KEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSLQ 74 (112)
T ss_dssp HHHTSCSSSCCCC---SSCCBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTTCB
T ss_pred cCCCCCcccChhh---cCeEECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHhhcC
Confidence 3467899999999 6777899999999999999998654 899999988766543
No 40
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=99.00 E-value=1.5e-10 Score=101.29 Aligned_cols=50 Identities=24% Similarity=0.609 Sum_probs=44.7
Q ss_pred ccCcccccccCCccCCCceEEcCCCCccchhchHHHHhcCC-CCCCcCcccCCC
Q 017252 239 EETLQCSVCLDDFEIGTEAKEMPCKHKFHSQCILPWLELHS-SCPVCRCQLPAD 291 (375)
Q Consensus 239 ~~~~~C~ICle~~~~~~~~~~lpCgH~Fh~~Ci~~WL~~~~-sCP~CR~~l~~~ 291 (375)
.+.+.|+||++.| ..++.++|+|.||..||..|+.... .||+||..+...
T Consensus 76 ~~~~~C~IC~~~~---~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 126 (150)
T 1z6u_A 76 EQSFMCVCCQELV---YQPVTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQN 126 (150)
T ss_dssp HHHTBCTTTSSBC---SSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTT
T ss_pred ccCCEeecCChhh---cCCEEcCCCCchhHHHHHHHHHhCCCcCCCCCccCCCC
Confidence 3468999999999 8889999999999999999998655 799999998866
No 41
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=98.98 E-value=1.2e-10 Score=97.45 Aligned_cols=56 Identities=30% Similarity=0.681 Sum_probs=47.6
Q ss_pred ccccCcccccccCCccCCCceEEcCCCCccchhchHHHHhcCC-CCCCcCcccCCCCCCC
Q 017252 237 KIEETLQCSVCLDDFEIGTEAKEMPCKHKFHSQCILPWLELHS-SCPVCRCQLPADEFKP 295 (375)
Q Consensus 237 ~~~~~~~C~ICle~~~~~~~~~~lpCgH~Fh~~Ci~~WL~~~~-sCP~CR~~l~~~~~~~ 295 (375)
.+.+.+.|+||++.+ ..++.++|||.||..||..|+.... .||+||..+......+
T Consensus 14 ~~~~~~~C~IC~~~~---~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~ 70 (118)
T 3hct_A 14 PLESKYECPICLMAL---REAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFP 70 (118)
T ss_dssp CCCGGGBCTTTCSBC---SSEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGCEE
T ss_pred CCCCCCCCCcCChhh---cCeEECCcCChhhHHHHHHHHhhCCCCCCCCCCCcCHHhccc
Confidence 445678999999999 7889999999999999999998765 8999999987654433
No 42
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.98 E-value=1.5e-10 Score=97.16 Aligned_cols=55 Identities=27% Similarity=0.655 Sum_probs=45.9
Q ss_pred ccCcccccccCCccCC----CceEEcCCCCccchhchHHHHhcCCCCCCcCcccCCCCC
Q 017252 239 EETLQCSVCLDDFEIG----TEAKEMPCKHKFHSQCILPWLELHSSCPVCRCQLPADEF 293 (375)
Q Consensus 239 ~~~~~C~ICle~~~~~----~~~~~lpCgH~Fh~~Ci~~WL~~~~sCP~CR~~l~~~~~ 293 (375)
.+.+.|+||++.|... ..++.++|||.||..||..|++.+.+||+||+.+.....
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~l 63 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRY 63 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTCSBCTTTCCBCTTTCE
T ss_pred CCCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHhCCCCCCCCCcCccccc
Confidence 3568999999999432 334899999999999999999999999999998876543
No 43
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=98.98 E-value=8.4e-11 Score=97.65 Aligned_cols=49 Identities=27% Similarity=0.709 Sum_probs=43.4
Q ss_pred cccCcccccccCCccCCCceEEcCCCCccchhchHHHHhc-CCCCCCcCcccC
Q 017252 238 IEETLQCSVCLDDFEIGTEAKEMPCKHKFHSQCILPWLEL-HSSCPVCRCQLP 289 (375)
Q Consensus 238 ~~~~~~C~ICle~~~~~~~~~~lpCgH~Fh~~Ci~~WL~~-~~sCP~CR~~l~ 289 (375)
..+++.|+||++.| ..++.++|||.||..||..|+.. ...||+||..+.
T Consensus 12 ~~~~~~C~iC~~~~---~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 61 (115)
T 3l11_A 12 SLSECQCGICMEIL---VEPVTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVS 61 (115)
T ss_dssp CHHHHBCTTTCSBC---SSCEECTTSCEECHHHHCCCCCTTTSBCTTTCCBCH
T ss_pred CCCCCCCccCCccc---CceeEcCCCCHHhHHHHHHHHhHCcCCCCCCCcccC
Confidence 34578999999999 78899999999999999999976 668999999875
No 44
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.97 E-value=1.8e-10 Score=86.10 Aligned_cols=55 Identities=18% Similarity=0.459 Sum_probs=42.4
Q ss_pred cCcccccccC-CccCCCc-eEEcCCCCccchhchHHHHhc-CCCCCCcCcccCCCCCC
Q 017252 240 ETLQCSVCLD-DFEIGTE-AKEMPCKHKFHSQCILPWLEL-HSSCPVCRCQLPADEFK 294 (375)
Q Consensus 240 ~~~~C~ICle-~~~~~~~-~~~lpCgH~Fh~~Ci~~WL~~-~~sCP~CR~~l~~~~~~ 294 (375)
++..|+||++ .+..... .+.++|||.||..||..|+.. ...||+||+.+......
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~ 59 (65)
T 1g25_A 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKSNFR 59 (65)
T ss_dssp CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSSCCCE
T ss_pred CCCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCccccccce
Confidence 3578999999 7743332 256799999999999999764 46799999998765543
No 45
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=98.96 E-value=1.8e-10 Score=101.63 Aligned_cols=49 Identities=33% Similarity=0.805 Sum_probs=42.7
Q ss_pred ccCcccccccCCccCCCceEEc-CCCCccchhchHHHHhc-CCCCCCcCcccCC
Q 017252 239 EETLQCSVCLDDFEIGTEAKEM-PCKHKFHSQCILPWLEL-HSSCPVCRCQLPA 290 (375)
Q Consensus 239 ~~~~~C~ICle~~~~~~~~~~l-pCgH~Fh~~Ci~~WL~~-~~sCP~CR~~l~~ 290 (375)
.+.+.|+||++.| ..++.+ +|||.||..||..|+.. ...||+||..+..
T Consensus 52 ~~~~~C~IC~~~~---~~p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 102 (165)
T 2ckl_B 52 HSELMCPICLDML---KNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVS 102 (165)
T ss_dssp HHHHBCTTTSSBC---SSEEEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCCS
T ss_pred CCCCCCcccChHh---hCcCEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCCC
Confidence 4567999999999 667776 89999999999999987 7789999998853
No 46
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=98.95 E-value=8.2e-11 Score=99.26 Aligned_cols=49 Identities=24% Similarity=0.549 Sum_probs=0.6
Q ss_pred CcccccccCCccCCC---------------ceEEcCCCCccchhchHHHHhcCCCCCCcCcccC
Q 017252 241 TLQCSVCLDDFEIGT---------------EAKEMPCKHKFHSQCILPWLELHSSCPVCRCQLP 289 (375)
Q Consensus 241 ~~~C~ICle~~~~~~---------------~~~~lpCgH~Fh~~Ci~~WL~~~~sCP~CR~~l~ 289 (375)
+..|+||++.|.... .+..++|+|.||..||.+||+.+.+||+||+.+.
T Consensus 48 ~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~~~ 111 (117)
T 4a0k_B 48 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWE 111 (117)
T ss_dssp C---------------------------------------------------------------
T ss_pred CCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcCCcCCCCCCeee
Confidence 578999999995421 2233589999999999999999999999998764
No 47
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=98.94 E-value=1.3e-10 Score=96.71 Aligned_cols=54 Identities=30% Similarity=0.694 Sum_probs=46.5
Q ss_pred cccCcccccccCCccCCCceEEcCCCCccchhchHHHHhc-CCCCCCcCcccCCCCCC
Q 017252 238 IEETLQCSVCLDDFEIGTEAKEMPCKHKFHSQCILPWLEL-HSSCPVCRCQLPADEFK 294 (375)
Q Consensus 238 ~~~~~~C~ICle~~~~~~~~~~lpCgH~Fh~~Ci~~WL~~-~~sCP~CR~~l~~~~~~ 294 (375)
+.+.+.|+||++.+ ..++.++|||.||..||..|+.. ...||+||..+....+.
T Consensus 20 ~~~~~~C~IC~~~~---~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~ 74 (116)
T 1rmd_A 20 FVKSISCQICEHIL---ADPVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTDLE 74 (116)
T ss_dssp HHHHTBCTTTCSBC---SSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCB
T ss_pred ccCCCCCCCCCcHh---cCcEEcCCCCcccHHHHHHHHhHCcCcCCCCCCCCCHhhcc
Confidence 34468999999999 78889999999999999999987 67899999998765543
No 48
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.91 E-value=4.3e-10 Score=93.85 Aligned_cols=52 Identities=31% Similarity=0.655 Sum_probs=45.1
Q ss_pred ccCcccccccCCccCCCceEEc-CCCCccchhchHHHHhcCCCCCCcCcccCCCCCCC
Q 017252 239 EETLQCSVCLDDFEIGTEAKEM-PCKHKFHSQCILPWLELHSSCPVCRCQLPADEFKP 295 (375)
Q Consensus 239 ~~~~~C~ICle~~~~~~~~~~l-pCgH~Fh~~Ci~~WL~~~~sCP~CR~~l~~~~~~~ 295 (375)
.+.+.|+||++.| ..++.+ +|||.||..||..|+. ..||+||..+....+.+
T Consensus 20 ~~~~~C~IC~~~~---~~pv~~~~CgH~fC~~Ci~~~~~--~~CP~Cr~~~~~~~~~~ 72 (117)
T 1jm7_B 20 EKLLRCSRCTNIL---REPVCLGGCEHIFCSNCVSDCIG--TGCPVCYTPAWIQDLKI 72 (117)
T ss_dssp HHTTSCSSSCSCC---SSCBCCCSSSCCBCTTTGGGGTT--TBCSSSCCBCSCSSCCC
T ss_pred hhCCCCCCCChHh---hCccEeCCCCCHHHHHHHHHHhc--CCCcCCCCcCccccccc
Confidence 4578999999999 788888 8999999999999998 78999999986655544
No 49
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.89 E-value=2.3e-10 Score=95.93 Aligned_cols=55 Identities=29% Similarity=0.722 Sum_probs=45.7
Q ss_pred ccCcccccccCCccC----CCceEEcCCCCccchhchHHHHhcCCCCCCcCcccCCCCC
Q 017252 239 EETLQCSVCLDDFEI----GTEAKEMPCKHKFHSQCILPWLELHSSCPVCRCQLPADEF 293 (375)
Q Consensus 239 ~~~~~C~ICle~~~~----~~~~~~lpCgH~Fh~~Ci~~WL~~~~sCP~CR~~l~~~~~ 293 (375)
.+...|+||++.|.. +..++.++|+|.||..||.+|++.+++||+||..+..+++
T Consensus 70 ~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 128 (133)
T 4ap4_A 70 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRY 128 (133)
T ss_dssp SSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHHCSBCTTTCCBCCGGGE
T ss_pred CCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHcCCCCCCCCCcCChhcc
Confidence 346789999999843 2334788999999999999999999999999999876543
No 50
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=98.86 E-value=5.8e-10 Score=96.65 Aligned_cols=52 Identities=23% Similarity=0.526 Sum_probs=45.0
Q ss_pred ccccCcccccccCCccCCCceEEcCCCCccchhchHHHHhcCC-CCCCcCcccCCC
Q 017252 237 KIEETLQCSVCLDDFEIGTEAKEMPCKHKFHSQCILPWLELHS-SCPVCRCQLPAD 291 (375)
Q Consensus 237 ~~~~~~~C~ICle~~~~~~~~~~lpCgH~Fh~~Ci~~WL~~~~-sCP~CR~~l~~~ 291 (375)
.+.+.+.|+||++.| ..++.++|||.||..||..|+.... .||+||..+...
T Consensus 27 ~l~~~~~C~IC~~~~---~~pv~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 79 (141)
T 3knv_A 27 KLEAKYLCSACRNVL---RRPFQAQCGHRYCSFCLASILSSGPQNCAACVHEGIYE 79 (141)
T ss_dssp GCCGGGBCTTTCSBC---SSEEECTTSCEEEHHHHHHHGGGSCEECHHHHHTTCCC
T ss_pred cCCcCcCCCCCChhh---cCcEECCCCCccCHHHHHHHHhcCCCCCCCCCCccccc
Confidence 445688999999999 8889999999999999999998665 899999976543
No 51
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.84 E-value=4.9e-10 Score=90.41 Aligned_cols=57 Identities=14% Similarity=0.501 Sum_probs=46.8
Q ss_pred ccCcccccccCCccCCCceEEcC-CCCccchhchHHHHhcC------CCCCC--cCcc-cCCCCCCCchh
Q 017252 239 EETLQCSVCLDDFEIGTEAKEMP-CKHKFHSQCILPWLELH------SSCPV--CRCQ-LPADEFKPESE 298 (375)
Q Consensus 239 ~~~~~C~ICle~~~~~~~~~~lp-CgH~Fh~~Ci~~WL~~~------~sCP~--CR~~-l~~~~~~~~~~ 298 (375)
.+.+.|+||++.| ..|+.++ |||.||..||..||... .+||+ |+.. +....+.+...
T Consensus 5 ~~~~~CPI~~~~~---~dPV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~~~~L~pn~~ 71 (94)
T 2yu4_A 5 SSGFTCPITKEEM---KKPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRKSDLIQDEA 71 (94)
T ss_dssp SSCCBCTTTCSBC---SSEEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBCGGGEEECHH
T ss_pred CcEeECcCcCchh---cCCEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccCHhhCcCCHH
Confidence 4578999999999 8899996 99999999999999754 48999 9876 76666555443
No 52
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.84 E-value=9.4e-10 Score=103.28 Aligned_cols=57 Identities=19% Similarity=0.260 Sum_probs=48.3
Q ss_pred ccccCcccccccCCccCCCceEEcCCCCccchhchHHHHhcC-CCCCCcCcccCCCCCCCc
Q 017252 237 KIEETLQCSVCLDDFEIGTEAKEMPCKHKFHSQCILPWLELH-SSCPVCRCQLPADEFKPE 296 (375)
Q Consensus 237 ~~~~~~~C~ICle~~~~~~~~~~lpCgH~Fh~~Ci~~WL~~~-~sCP~CR~~l~~~~~~~~ 296 (375)
.+.+.+.|+||++.| ..|++++|||+||..||..||... .+||+|+.++....+.+.
T Consensus 204 ~~~~~~~c~i~~~~~---~dPv~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~~~l~~n 261 (281)
T 2c2l_A 204 DIPDYLCGKISFELM---REPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQLIPN 261 (281)
T ss_dssp CCCSTTBCTTTCSBC---SSEEECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCGGGCEEC
T ss_pred CCCcccCCcCcCCHh---cCCeECCCCCEECHHHHHHHHHHCCCCCcCCCCCCchhcCccc
Confidence 444688999999999 999999999999999999999864 459999999876655543
No 53
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.83 E-value=1.8e-09 Score=83.98 Aligned_cols=51 Identities=20% Similarity=0.567 Sum_probs=41.1
Q ss_pred cCcccccccCCccCCCceEEcCCCCccchhchHHHHhcC--CCCCCcCcccCCCC
Q 017252 240 ETLQCSVCLDDFEIGTEAKEMPCKHKFHSQCILPWLELH--SSCPVCRCQLPADE 292 (375)
Q Consensus 240 ~~~~C~ICle~~~~~~~~~~lpCgH~Fh~~Ci~~WL~~~--~sCP~CR~~l~~~~ 292 (375)
....|+||++.+..+... ..|+|.||..||.+||+.+ .+||+||..+....
T Consensus 14 ~i~~C~IC~~~i~~g~~C--~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~~~ 66 (74)
T 2ct0_A 14 AVKICNICHSLLIQGQSC--ETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHEI 66 (74)
T ss_dssp SSCBCSSSCCBCSSSEEC--SSSCCEECHHHHHHHSTTCSSCCCTTTCSCCCSCC
T ss_pred CCCcCcchhhHcccCCcc--CCCCchhhHHHHHHHHHhcCCCCCCCCcCcCCCCC
Confidence 357899999999644322 2699999999999999877 78999998876443
No 54
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.82 E-value=1.6e-09 Score=79.08 Aligned_cols=47 Identities=28% Similarity=0.668 Sum_probs=40.3
Q ss_pred ccCcccccccCCccCCCceEEcCCCCccchhchHHHHhcCCCCCCcCcccCCC
Q 017252 239 EETLQCSVCLDDFEIGTEAKEMPCKHKFHSQCILPWLELHSSCPVCRCQLPAD 291 (375)
Q Consensus 239 ~~~~~C~ICle~~~~~~~~~~lpCgH~Fh~~Ci~~WL~~~~sCP~CR~~l~~~ 291 (375)
.+.+.|+||++.| ..++.++|+|.||..||..| ...||+||+.+...
T Consensus 4 ~~~~~C~IC~~~~---~~p~~l~CgH~fC~~Ci~~~---~~~CP~Cr~~~~~~ 50 (56)
T 1bor_A 4 FQFLRCQQCQAEA---KCPKLLPCLHTLCSGCLEAS---GMQCPICQAPWPLG 50 (56)
T ss_dssp CCCSSCSSSCSSC---BCCSCSTTSCCSBTTTCSSS---SSSCSSCCSSSSCC
T ss_pred ccCCCceEeCCcc---CCeEEcCCCCcccHHHHccC---CCCCCcCCcEeecC
Confidence 3578899999999 67889999999999999884 56899999987654
No 55
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=98.77 E-value=3.8e-09 Score=82.68 Aligned_cols=56 Identities=25% Similarity=0.614 Sum_probs=42.8
Q ss_pred ccccCcccccccCCccCCCceEEcC--CCCccchhchHHHHh-cCCCCCCcCcccCCCCC
Q 017252 237 KIEETLQCSVCLDDFEIGTEAKEMP--CKHKFHSQCILPWLE-LHSSCPVCRCQLPADEF 293 (375)
Q Consensus 237 ~~~~~~~C~ICle~~~~~~~~~~lp--CgH~Fh~~Ci~~WL~-~~~sCP~CR~~l~~~~~ 293 (375)
.++++..|+||++.+... .++.+| |||.||..|+..|+. ....||+||+.+.....
T Consensus 7 ~~~~~~~CpICle~~~~~-d~~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~~~ 65 (78)
T 1e4u_A 7 AKEDPVECPLCMEPLEID-DINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPEDPA 65 (78)
T ss_dssp CCCCCCBCTTTCCBCCTT-TTTCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCSSCSS
T ss_pred ccccCCcCCccCccCccc-cccccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccCCCch
Confidence 356688999999988432 233444 999999999999885 35679999998876543
No 56
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=98.75 E-value=4.1e-09 Score=79.11 Aligned_cols=48 Identities=19% Similarity=0.378 Sum_probs=41.9
Q ss_pred ccCcccccccCCccCCCceEEc--CCCCc-cchhchHHHHhcCCCCCCcCcccC
Q 017252 239 EETLQCSVCLDDFEIGTEAKEM--PCKHK-FHSQCILPWLELHSSCPVCRCQLP 289 (375)
Q Consensus 239 ~~~~~C~ICle~~~~~~~~~~l--pCgH~-Fh~~Ci~~WL~~~~sCP~CR~~l~ 289 (375)
.++..|.||++.+ ..++.+ ||||. ||..|+..|++.+..||+||+.+.
T Consensus 6 ~~~~~C~IC~~~~---~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~ 56 (64)
T 2vje_A 6 NAIEPCVICQGRP---KNGCIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPIQ 56 (64)
T ss_dssp GGGSCCTTTSSSC---SCEEEEETTEEEEEECHHHHHHHHHTTCCCTTTCCCCC
T ss_pred CCcCCCCcCCCCC---CCEEEECCCCCChhhHHHHHHHHHHcCCcCCCcCcchh
Confidence 3467899999998 667766 99999 899999999998889999999874
No 57
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.75 E-value=1.9e-09 Score=83.10 Aligned_cols=44 Identities=27% Similarity=0.645 Sum_probs=39.7
Q ss_pred ccCcccccccCCccCCCceEEcCCCCc-cchhchHHHHhcCCCCCCcCcccC
Q 017252 239 EETLQCSVCLDDFEIGTEAKEMPCKHK-FHSQCILPWLELHSSCPVCRCQLP 289 (375)
Q Consensus 239 ~~~~~C~ICle~~~~~~~~~~lpCgH~-Fh~~Ci~~WL~~~~sCP~CR~~l~ 289 (375)
.+...|+||++.+ ..++.+||||. ||..|+..| ..||+||..+.
T Consensus 22 ~~~~~C~iC~~~~---~~~~~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~ 66 (74)
T 4ic3_A 22 QEEKLCKICMDRN---IAIVFVPCGHLVTCKQCAEAV----DKCPMCYTVIT 66 (74)
T ss_dssp HHHTBCTTTSSSB---CCEEEETTCCBCCCHHHHTTC----SBCTTTCCBCS
T ss_pred ccCCCCCCCCCCC---CCEEEcCCCChhHHHHhhhcC----ccCCCcCcCcc
Confidence 3467899999999 88899999999 999999998 78999998875
No 58
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=98.72 E-value=3.2e-09 Score=93.87 Aligned_cols=56 Identities=30% Similarity=0.677 Sum_probs=47.4
Q ss_pred ccccCcccccccCCccCCCceEEcCCCCccchhchHHHHhcC-CCCCCcCcccCCCCCCC
Q 017252 237 KIEETLQCSVCLDDFEIGTEAKEMPCKHKFHSQCILPWLELH-SSCPVCRCQLPADEFKP 295 (375)
Q Consensus 237 ~~~~~~~C~ICle~~~~~~~~~~lpCgH~Fh~~Ci~~WL~~~-~sCP~CR~~l~~~~~~~ 295 (375)
.+.+.+.|+||++.| ..++.++|||.||..||..|+... ..||+||..+....+.+
T Consensus 14 ~~~~~~~C~IC~~~~---~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~ 70 (170)
T 3hcs_A 14 PLESKYECPICLMAL---REAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFP 70 (170)
T ss_dssp CCCGGGBCTTTCSBC---SSEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGCEE
T ss_pred CCCCCCCCCCCChhh---cCcEECCCCCHHHHHHHHHHHHhCCCCCCCCccCcchhhhhh
Confidence 345688999999999 788999999999999999999764 48999999887654443
No 59
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.71 E-value=6.5e-09 Score=103.86 Aligned_cols=48 Identities=29% Similarity=0.851 Sum_probs=43.2
Q ss_pred CcccccccCCccCCCceEEcCCCCccchhchHHHHh-cCCCCCCcCcccCCC
Q 017252 241 TLQCSVCLDDFEIGTEAKEMPCKHKFHSQCILPWLE-LHSSCPVCRCQLPAD 291 (375)
Q Consensus 241 ~~~C~ICle~~~~~~~~~~lpCgH~Fh~~Ci~~WL~-~~~sCP~CR~~l~~~ 291 (375)
...|+||++.+ ..++.+||||.||..|+..|+. ....||+||..+...
T Consensus 332 ~~~C~ICle~~---~~pv~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~~ 380 (389)
T 2y1n_A 332 FQLCKICAEND---KDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGT 380 (389)
T ss_dssp SSBCTTTSSSB---CCEEEETTCCEECHHHHHHHHHHTCSBCTTTCCBCCEE
T ss_pred CCCCCccCcCC---CCeEEeCCCChhhHHHHHHHHhcCCCCCCCCCCccCCc
Confidence 47899999999 7889999999999999999998 678999999987643
No 60
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=98.67 E-value=9.2e-09 Score=92.72 Aligned_cols=58 Identities=21% Similarity=0.251 Sum_probs=49.1
Q ss_pred ccccCcccccccCCccCCCceEEcCCCCccchhchHHHHhcC-CCCCCcCcccCCCCCCCch
Q 017252 237 KIEETLQCSVCLDDFEIGTEAKEMPCKHKFHSQCILPWLELH-SSCPVCRCQLPADEFKPES 297 (375)
Q Consensus 237 ~~~~~~~C~ICle~~~~~~~~~~lpCgH~Fh~~Ci~~WL~~~-~sCP~CR~~l~~~~~~~~~ 297 (375)
.+.+.+.|+||++.| ..|+.++|||.||..||..||... .+||+|+..+....+.+..
T Consensus 102 ~ip~~f~CPI~~elm---~DPV~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~~~L~pN~ 160 (179)
T 2f42_A 102 EIPDYLCGKISFELM---REPCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQDQLIPNL 160 (179)
T ss_dssp CCCGGGBCTTTCSBC---SSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCEECH
T ss_pred CCcHhhcccCccccC---CCCeECCCCCEECHHHHHHHHHhCCCCCCCCcCCCChhhCcchH
Confidence 345689999999999 899999999999999999999764 4699999998766655443
No 61
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=98.64 E-value=1.2e-08 Score=76.22 Aligned_cols=46 Identities=20% Similarity=0.447 Sum_probs=40.5
Q ss_pred CcccccccCCccCCCceEEc--CCCCc-cchhchHHHHhcCCCCCCcCcccC
Q 017252 241 TLQCSVCLDDFEIGTEAKEM--PCKHK-FHSQCILPWLELHSSCPVCRCQLP 289 (375)
Q Consensus 241 ~~~C~ICle~~~~~~~~~~l--pCgH~-Fh~~Ci~~WL~~~~sCP~CR~~l~ 289 (375)
...|.||++.+ ..+..+ ||||. ||..|+..|++....||+||+.+.
T Consensus 7 ~~~C~IC~~~~---~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~ 55 (63)
T 2vje_B 7 LKPCSLCEKRP---RDGNIIHGRTGHLVTCFHCARRLKKAGASCPICKKEIQ 55 (63)
T ss_dssp GSBCTTTSSSB---SCEEEEETTEEEEEECHHHHHHHHHTTCBCTTTCCBCC
T ss_pred CCCCcccCCcC---CCeEEEecCCCCHhHHHHHHHHHHHhCCcCCCcCchhh
Confidence 56899999988 666666 99998 999999999988889999999874
No 62
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.53 E-value=1.6e-08 Score=77.93 Aligned_cols=44 Identities=27% Similarity=0.619 Sum_probs=37.9
Q ss_pred cCcccccccCCccCCCceEEcCCCCc-cchhchHHHHhcCCCCCCcCcccCC
Q 017252 240 ETLQCSVCLDDFEIGTEAKEMPCKHK-FHSQCILPWLELHSSCPVCRCQLPA 290 (375)
Q Consensus 240 ~~~~C~ICle~~~~~~~~~~lpCgH~-Fh~~Ci~~WL~~~~sCP~CR~~l~~ 290 (375)
+...|+||++.+ ..++.+||+|. ||..|+.. ...||+||..+..
T Consensus 24 ~~~~C~IC~~~~---~~~~~~pCgH~~~C~~C~~~----~~~CP~Cr~~i~~ 68 (75)
T 2ecg_A 24 EEKLCKICMDRN---IAIVFVPCGHLVTCKQCAEA----VDKCPMCYTVITF 68 (75)
T ss_dssp HHHSCSSSCSSC---CCBCCSSSCCCCBCHHHHHH----CSBCTTTCCBCCC
T ss_pred CCCCCCcCCCCC---CCEEEecCCCHHHHHHHhhC----CCCCccCCceecC
Confidence 356899999999 78888999999 99999954 4789999998864
No 63
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=98.45 E-value=4.6e-08 Score=72.99 Aligned_cols=52 Identities=10% Similarity=0.152 Sum_probs=45.6
Q ss_pred CcccccccCCccCCCceEEc-CCCCccchhchHHHHhcCCCCCCcCcccCCCCCCC
Q 017252 241 TLQCSVCLDDFEIGTEAKEM-PCKHKFHSQCILPWLELHSSCPVCRCQLPADEFKP 295 (375)
Q Consensus 241 ~~~C~ICle~~~~~~~~~~l-pCgH~Fh~~Ci~~WL~~~~sCP~CR~~l~~~~~~~ 295 (375)
.+.|+||++.+ .+++.+ +|||+|.+.||.+||..+.+||+++..|...++.+
T Consensus 3 ~~~CpIs~~~m---~dPV~~~~sG~~yer~~I~~~l~~~~~cP~t~~~L~~~~Lip 55 (61)
T 2bay_A 3 HMLCAISGKVP---RRPVLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSIEEIVE 55 (61)
T ss_dssp -CCCTTTCSCC---SSEEEETTTTEEEEHHHHHHHHHHHSBCTTTCCBCCGGGCEE
T ss_pred eEEecCCCCCC---CCCEEeCCCCcEEcHHHHHHHHHhCCCCcCCcCCCChhhcEE
Confidence 36899999999 788998 89999999999999998888999999987666543
No 64
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.43 E-value=4.1e-08 Score=76.74 Aligned_cols=44 Identities=32% Similarity=0.767 Sum_probs=38.8
Q ss_pred cCcccccccCCccCCCceEEcCCCCc-cchhchHHHHhcCCCCCCcCcccCC
Q 017252 240 ETLQCSVCLDDFEIGTEAKEMPCKHK-FHSQCILPWLELHSSCPVCRCQLPA 290 (375)
Q Consensus 240 ~~~~C~ICle~~~~~~~~~~lpCgH~-Fh~~Ci~~WL~~~~sCP~CR~~l~~ 290 (375)
+...|.||++.+ ..++.+||||. ||..|+..| ..||+||..+..
T Consensus 17 ~~~~C~IC~~~~---~~~v~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~~ 61 (79)
T 2yho_A 17 EAMLCMVCCEEE---INSTFCPCGHTVCCESCAAQL----QSCPVCRSRVEH 61 (79)
T ss_dssp HHTBCTTTSSSB---CCEEEETTCBCCBCHHHHTTC----SBCTTTCCBCCE
T ss_pred CCCEeEEeCccc---CcEEEECCCCHHHHHHHHHhc----CcCCCCCchhhC
Confidence 457899999999 88999999999 999999887 389999998764
No 65
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=98.42 E-value=4.9e-08 Score=92.61 Aligned_cols=60 Identities=18% Similarity=0.382 Sum_probs=48.9
Q ss_pred ccccccCcccccccCCccCCCceEEc-CCCCccchhchHHHHhcC--CCCCC--cCcccCCCCCCCch
Q 017252 235 SVKIEETLQCSVCLDDFEIGTEAKEM-PCKHKFHSQCILPWLELH--SSCPV--CRCQLPADEFKPES 297 (375)
Q Consensus 235 ~~~~~~~~~C~ICle~~~~~~~~~~l-pCgH~Fh~~Ci~~WL~~~--~sCP~--CR~~l~~~~~~~~~ 297 (375)
.......+.|+||++.| ..|+.. .|||.||+.||..|+..+ ..||+ |+..+....+.+..
T Consensus 175 v~~~~~el~CPIcl~~f---~DPVts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~~dL~pN~ 239 (267)
T 3htk_C 175 IEGGKIELTCPITCKPY---EAPLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSMRDFVRDP 239 (267)
T ss_dssp CCSSBCCSBCTTTSSBC---SSEEEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEECGGGEEECH
T ss_pred ecCCceeeECcCccCcc---cCCeeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCchhhCCcCH
Confidence 33445589999999999 888875 899999999999999764 46999 99988877665543
No 66
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.41 E-value=6.5e-08 Score=95.45 Aligned_cols=45 Identities=29% Similarity=0.747 Sum_probs=40.4
Q ss_pred cccCcccccccCCccCCCceEEcCCCCc-cchhchHHHHhcCCCCCCcCcccC
Q 017252 238 IEETLQCSVCLDDFEIGTEAKEMPCKHK-FHSQCILPWLELHSSCPVCRCQLP 289 (375)
Q Consensus 238 ~~~~~~C~ICle~~~~~~~~~~lpCgH~-Fh~~Ci~~WL~~~~sCP~CR~~l~ 289 (375)
+++...|+||++.+ ..++.+||||. ||..|+..| ..||+||..+.
T Consensus 292 l~~~~~C~IC~~~~---~~~v~lpCgH~~fC~~C~~~~----~~CP~CR~~i~ 337 (345)
T 3t6p_A 292 LQEERTCKVCMDKE---VSVVFIPCGHLVVCQECAPSL----RKCPICRGIIK 337 (345)
T ss_dssp HHTTCBCTTTSSSB---CCEEEETTCCEEECTTTGGGC----SBCTTTCCBCC
T ss_pred CcCCCCCCccCCcC---CceEEcCCCChhHhHHHHhcC----CcCCCCCCCcc
Confidence 34578999999999 88999999999 999999988 78999999875
No 67
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.40 E-value=2.1e-07 Score=70.62 Aligned_cols=44 Identities=25% Similarity=0.697 Sum_probs=38.4
Q ss_pred cCcccccccCCccCCCceEEcCCCCc-cchhchHHHHhcCCCCCCcCcccCC
Q 017252 240 ETLQCSVCLDDFEIGTEAKEMPCKHK-FHSQCILPWLELHSSCPVCRCQLPA 290 (375)
Q Consensus 240 ~~~~C~ICle~~~~~~~~~~lpCgH~-Fh~~Ci~~WL~~~~sCP~CR~~l~~ 290 (375)
+...|.||++.+ ..++.+||+|. ||..|+.. ...||+||..+..
T Consensus 14 ~~~~C~IC~~~~---~~~v~~pCgH~~~C~~C~~~----~~~CP~CR~~i~~ 58 (68)
T 2ea5_A 14 NSKDCVVCQNGT---VNWVLLPCRHTCLCDGCVKY----FQQCPMCRQFVQE 58 (68)
T ss_dssp CSSCCSSSSSSC---CCCEETTTTBCCSCTTHHHH----CSSCTTTCCCCCC
T ss_pred CCCCCCCcCcCC---CCEEEECCCChhhhHHHHhc----CCCCCCCCcchhc
Confidence 467899999998 88999999999 99999873 4789999998754
No 68
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=98.37 E-value=9.6e-08 Score=93.69 Aligned_cols=51 Identities=27% Similarity=0.716 Sum_probs=39.6
Q ss_pred cCcccccccCCccC-CCceE----EcCCCCccchhchHHHHhcC-----------CCCCCcCcccCC
Q 017252 240 ETLQCSVCLDDFEI-GTEAK----EMPCKHKFHSQCILPWLELH-----------SSCPVCRCQLPA 290 (375)
Q Consensus 240 ~~~~C~ICle~~~~-~~~~~----~lpCgH~Fh~~Ci~~WL~~~-----------~sCP~CR~~l~~ 290 (375)
....|+||++.+.. +..+. ..+|+|.||..||.+||+.. ..||+||+++..
T Consensus 307 ~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~ 373 (381)
T 3k1l_B 307 EELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLST 373 (381)
T ss_dssp SCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEG
T ss_pred CCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCc
Confidence 46789999999965 33332 24699999999999999742 359999998764
No 69
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.28 E-value=2.6e-07 Score=73.92 Aligned_cols=48 Identities=27% Similarity=0.683 Sum_probs=37.3
Q ss_pred cCcccccccCCccCCCceEEcCCCCccchhchHHHHhc--------CCCCCC--cCcc
Q 017252 240 ETLQCSVCLDDFEIGTEAKEMPCKHKFHSQCILPWLEL--------HSSCPV--CRCQ 287 (375)
Q Consensus 240 ~~~~C~ICle~~~~~~~~~~lpCgH~Fh~~Ci~~WL~~--------~~sCP~--CR~~ 287 (375)
+...|+||++.+........++|+|.||..||..|+.. ...||. |+..
T Consensus 4 ~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 4 GSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp SBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred CCcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 35789999999854433344579999999999999863 136999 9987
No 70
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=98.24 E-value=4.1e-07 Score=67.60 Aligned_cols=48 Identities=19% Similarity=0.690 Sum_probs=37.6
Q ss_pred cCcccccccCCccCCCceEEcCCC--C---ccchhchHHHHhc--CCCCCCcCcccCC
Q 017252 240 ETLQCSVCLDDFEIGTEAKEMPCK--H---KFHSQCILPWLEL--HSSCPVCRCQLPA 290 (375)
Q Consensus 240 ~~~~C~ICle~~~~~~~~~~lpCg--H---~Fh~~Ci~~WL~~--~~sCP~CR~~l~~ 290 (375)
+...|.||++.. .....+||. + .||..||.+|+.. +.+||+|++.+..
T Consensus 5 ~~~~CrIC~~~~---~~~l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~~ 59 (60)
T 1vyx_A 5 DVPVCWICNEEL---GNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYNT 59 (60)
T ss_dssp SCCEETTTTEEC---SCCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCCC
T ss_pred CCCEeEEeecCC---CCceecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeeec
Confidence 467899999975 334468955 4 9999999999964 5689999988753
No 71
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=97.65 E-value=2.3e-05 Score=63.81 Aligned_cols=45 Identities=24% Similarity=0.544 Sum_probs=37.8
Q ss_pred ccccccCCccCCCceEEcCCCCccchhchHHHHh-cCCCCCCcCcccC
Q 017252 243 QCSVCLDDFEIGTEAKEMPCKHKFHSQCILPWLE-LHSSCPVCRCQLP 289 (375)
Q Consensus 243 ~C~ICle~~~~~~~~~~lpCgH~Fh~~Ci~~WL~-~~~sCP~CR~~l~ 289 (375)
.|.+|--.+. ...+.+||+|+||.+|+..|.+ ..++||.|+..+.
T Consensus 3 fC~~C~~Pi~--iygRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~ 48 (101)
T 3vk6_A 3 FCDKCGLPIK--VYGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQ 48 (101)
T ss_dssp BCTTTCSBCS--EEEEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCS
T ss_pred ecCccCCCeE--EEeeeccccccHHHHHHHHHHhccCCCCcCcCCeee
Confidence 5888887774 5678889999999999999985 4678999998775
No 72
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=97.53 E-value=9.9e-05 Score=69.11 Aligned_cols=49 Identities=20% Similarity=0.604 Sum_probs=39.6
Q ss_pred CcccccccCCccCCCceEEcC-CCCccchhchHHHHhcCC--CCCCcCcccCCCC
Q 017252 241 TLQCSVCLDDFEIGTEAKEMP-CKHKFHSQCILPWLELHS--SCPVCRCQLPADE 292 (375)
Q Consensus 241 ~~~C~ICle~~~~~~~~~~lp-CgH~Fh~~Ci~~WL~~~~--sCP~CR~~l~~~~ 292 (375)
...|.||.+.+..+ +.-+ |+|.||..|+..|++.+. .||.|+..++...
T Consensus 180 i~~C~iC~~iv~~g---~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~~~ 231 (238)
T 3nw0_A 180 VKICNICHSLLIQG---QSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHEI 231 (238)
T ss_dssp CCBCTTTCSBCSSC---EECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCCSCC
T ss_pred CCcCcchhhHHhCC---cccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCCCCC
Confidence 56899999999543 4444 999999999999997654 8999999876553
No 73
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=93.31 E-value=0.057 Score=43.33 Aligned_cols=54 Identities=22% Similarity=0.552 Sum_probs=42.8
Q ss_pred CccccccCcccccccCCccCCCceEEcCCC-CccchhchHHHHhcCCCCCCcCcccCCCC
Q 017252 234 PSVKIEETLQCSVCLDDFEIGTEAKEMPCK-HKFHSQCILPWLELHSSCPVCRCQLPADE 292 (375)
Q Consensus 234 p~~~~~~~~~C~ICle~~~~~~~~~~lpCg-H~Fh~~Ci~~WL~~~~sCP~CR~~l~~~~ 292 (375)
+...+-+-+.|..|+-.. . ..+.|. |.+|..|+.-.|.....||+|+.+|+..-
T Consensus 21 ~d~s~~G~~nCKsCWf~~---k--~LV~C~dHYLCl~CLtlmL~~SdrCpIC~~pLPtkl 75 (99)
T 2ko5_A 21 PDATHLGPQFCKSCWFEN---K--GLVECNNHYLCLNCLTLLLSVSNRCPICKMPLPTKL 75 (99)
T ss_dssp SSCCCSCCCCCCSSCSCC---S--SEEECSSCEEEHHHHHHTCSSSSEETTTTEECCCCS
T ss_pred CCccccCcccChhhcccc---C--CeeeecchhhHHHHHHHHHhhccCCcccCCcCCcce
Confidence 334445578899999876 3 344565 99999999999999999999999998654
No 74
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=92.28 E-value=0.047 Score=43.36 Aligned_cols=33 Identities=21% Similarity=0.577 Sum_probs=25.9
Q ss_pred cCcccccccCCccCCCceEE--cCCCCccchhchHHH
Q 017252 240 ETLQCSVCLDDFEIGTEAKE--MPCKHKFHSQCILPW 274 (375)
Q Consensus 240 ~~~~C~ICle~~~~~~~~~~--lpCgH~Fh~~Ci~~W 274 (375)
++..|.||++.+. ..++. +.|+|.||..|+..+
T Consensus 2 ee~~C~~C~~~~~--~~av~~C~~C~~~~C~~Cl~~~ 36 (101)
T 2jun_A 2 EKVLCQFCDQDPA--QDAVKTCVTCEVSYCDECLKAT 36 (101)
T ss_dssp CCCBCTTCCSSSC--CBCCEEETTTTEEECHHHHHHH
T ss_pred CCCCCcCCCCCCC--CCceEECCcCChHHhHHHCHHH
Confidence 3578999997642 44555 899999999999983
No 75
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=91.04 E-value=0.14 Score=56.42 Aligned_cols=58 Identities=16% Similarity=0.216 Sum_probs=50.2
Q ss_pred ccCcccccccCCccCCCceEEcCCC-CccchhchHHHHhcCCCCCCcCcccCCCCCCCchhc
Q 017252 239 EETLQCSVCLDDFEIGTEAKEMPCK-HKFHSQCILPWLELHSSCPVCRCQLPADEFKPESER 299 (375)
Q Consensus 239 ~~~~~C~ICle~~~~~~~~~~lpCg-H~Fh~~Ci~~WL~~~~sCP~CR~~l~~~~~~~~~~~ 299 (375)
-+.+.|+|-++.+ .+|+.+|.| +.|-+.+|.+||..+.+||+=|.+|....+.|..+-
T Consensus 889 P~~F~cPIs~~lM---~DPVilpsG~~TydR~~I~~wl~~~~tdP~Tr~~L~~~~liPN~~L 947 (968)
T 3m62_A 889 PDEFLDPLMYTIM---KDPVILPASKMNIDRSTIKAHLLSDSTDPFNRMPLKLEDVTPNEEL 947 (968)
T ss_dssp CGGGBCTTTCSBC---SSEEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCGGGCEECHHH
T ss_pred cHHhCCcchhhHH---hCCeEcCCCCEEECHHHHHHHHhcCCCCCCCCCCCCcccccccHHH
Confidence 3478999999999 999999997 689999999999989999999999987766665443
No 76
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=90.49 E-value=0.17 Score=41.89 Aligned_cols=34 Identities=24% Similarity=0.433 Sum_probs=27.3
Q ss_pred CCceeccccCcceeccCCCCc-cCCCCCCCceeecc
Q 017252 7 ASRYWCHMCSQIVDPIMEVEI-KCPFCQSGFVEEMG 41 (375)
Q Consensus 7 ~~~ywCh~C~~~V~~~~~~e~-~CP~C~~gFvEEm~ 41 (375)
...|||..|...+... .... +||.|++..++-+.
T Consensus 71 p~~~~C~~CG~~~e~~-~~~~~~CP~Cgs~~~~i~~ 105 (119)
T 2kdx_A 71 KVELECKDCSHVFKPN-ALDYGVCEKCHSKNVIITQ 105 (119)
T ss_dssp CCEEECSSSSCEECSC-CSTTCCCSSSSSCCCEEEE
T ss_pred cceEEcCCCCCEEeCC-CCCCCcCccccCCCcEEec
Confidence 4689999999998775 4567 99999999776444
No 77
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=85.87 E-value=0.47 Score=37.30 Aligned_cols=33 Identities=24% Similarity=0.524 Sum_probs=23.6
Q ss_pred cccCcccccccCCccCCCceEEcC---CCCccchhchHHH
Q 017252 238 IEETLQCSVCLDDFEIGTEAKEMP---CKHKFHSQCILPW 274 (375)
Q Consensus 238 ~~~~~~C~ICle~~~~~~~~~~lp---CgH~Fh~~Ci~~W 274 (375)
+..+..|.||--.- .-..+| |+-+||..|+.+.
T Consensus 12 ~~~D~~C~VC~~~t----~~~l~pCRvC~RvfH~~CL~r~ 47 (89)
T 1wil_A 12 VVNDEMCDVCEVWT----AESLFPCRVCTRVFHDGCLRRM 47 (89)
T ss_dssp CCCSCCCTTTCCCC----SSCCSSCSSSSSCCCHHHHHHH
T ss_pred CCCCcccCcccccc----ccceeccccccccccHhhcccc
Confidence 34578999997432 122344 8899999999986
No 78
>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X
Probab=84.55 E-value=0.47 Score=33.18 Aligned_cols=32 Identities=19% Similarity=0.539 Sum_probs=21.7
Q ss_pred CceeccccCcceecc---CCCCccCCCCCCCceee
Q 017252 8 SRYWCHMCSQIVDPI---MEVEIKCPFCQSGFVEE 39 (375)
Q Consensus 8 ~~ywCh~C~~~V~~~---~~~e~~CP~C~~gFvEE 39 (375)
..|-|-.|-+.++-. .-.+|+||+|+=--+.-
T Consensus 2 ~iY~C~rCg~~fs~~el~~lP~IrCpyCGyrii~K 36 (48)
T 4ayb_P 2 AVYRCGKCWKTFTDEQLKVLPGVRCPYCGYKIIFM 36 (48)
T ss_dssp ---CCCCTTTTCCCCCSCCCSSSCCTTTCCSCEEC
T ss_pred cEEEeeccCCCccHHHHhhCCCcccCccCcEEEEE
Confidence 358999999998432 24789999998655543
No 79
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=84.54 E-value=0.69 Score=34.46 Aligned_cols=44 Identities=25% Similarity=0.527 Sum_probs=31.0
Q ss_pred CcccccccCCccCCCceEEcCCCCccchhchHHHHhcCC----CCCCcCcc
Q 017252 241 TLQCSVCLDDFEIGTEAKEMPCKHKFHSQCILPWLELHS----SCPVCRCQ 287 (375)
Q Consensus 241 ~~~C~ICle~~~~~~~~~~lpCgH~Fh~~Ci~~WL~~~~----sCP~CR~~ 287 (375)
...|.||.+.- ..+.=-.|...||..|+.+.|.... .||.|...
T Consensus 12 ~~~C~vC~~~~---~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~ 59 (66)
T 2lri_C 12 GARCGVCGDGT---DVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGD 59 (66)
T ss_dssp TCCCTTTSCCT---TCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTC
T ss_pred CCCcCCCCCCC---eEEECCCCCCceecccCCCccCcCCCCCEECccccCC
Confidence 56799998542 3222223899999999998886433 59999754
No 80
>3a43_A HYPD, hydrogenase nickel incorporation protein HYPA; [NIFE] hydrogenase maturation, zinc-finger, nickel binding, metal-binding; HET: FME; 2.30A {Pyrococcus kodakaraensis} PDB: 3a44_A*
Probab=83.10 E-value=0.62 Score=39.70 Aligned_cols=32 Identities=25% Similarity=0.372 Sum_probs=25.0
Q ss_pred CCceeccccCcceeccC----------CC----------CccCCCCCCCcee
Q 017252 7 ASRYWCHMCSQIVDPIM----------EV----------EIKCPFCQSGFVE 38 (375)
Q Consensus 7 ~~~ywCh~C~~~V~~~~----------~~----------e~~CP~C~~gFvE 38 (375)
..++||..|...+.+.. +. ..+||.|++.-++
T Consensus 68 p~~~~C~~CG~~~~~~~~~~~~~~~~~~~~h~~p~~~~~~~~CP~Cgs~~~~ 119 (139)
T 3a43_A 68 EAVFKCRNCNYEWKLKEVKDKFDERIKEDIHFIPEVVHAFLACPKCGSHDFE 119 (139)
T ss_dssp CCEEEETTTCCEEEGGGCTTCCSCCCGGGCCCCGGGCGGGCSCSSSSCCCEE
T ss_pred CCcEECCCCCCEEecccccccccccccccccccccccccCCcCccccCCccE
Confidence 46899999999986642 03 5789999998776
No 81
>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=80.44 E-value=1 Score=33.47 Aligned_cols=32 Identities=19% Similarity=0.341 Sum_probs=27.2
Q ss_pred CCceeccccCcceeccCCCCccCCCCCCCcee
Q 017252 7 ASRYWCHMCSQIVDPIMEVEIKCPFCQSGFVE 38 (375)
Q Consensus 7 ~~~ywCh~C~~~V~~~~~~e~~CP~C~~gFvE 38 (375)
...|-|-.|...|.+.....|+||.|+.-.+-
T Consensus 19 ~v~Y~C~~Cg~~~~l~~~~~iRC~~CG~RILy 50 (63)
T 3h0g_L 19 TMIYLCADCGARNTIQAKEVIRCRECGHRVMY 50 (63)
T ss_dssp CCCCBCSSSCCBCCCCSSSCCCCSSSCCCCCB
T ss_pred CeEEECCCCCCeeecCCCCceECCCCCcEEEE
Confidence 35799999999998887788999999986653
No 82
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=75.92 E-value=1.5 Score=31.82 Aligned_cols=45 Identities=29% Similarity=0.544 Sum_probs=30.0
Q ss_pred cCcccccccCCccCCCceEEcCCCCccchhchHHHHhcC----CCCCCcCcc
Q 017252 240 ETLQCSVCLDDFEIGTEAKEMPCKHKFHSQCILPWLELH----SSCPVCRCQ 287 (375)
Q Consensus 240 ~~~~C~ICle~~~~~~~~~~lpCgH~Fh~~Ci~~WL~~~----~sCP~CR~~ 287 (375)
.+..|.||...- ..+.--.|...||..|+.+-|... -.||.|...
T Consensus 8 ~~~~C~vC~~~g---~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~ 56 (61)
T 1mm2_A 8 HMEFCRVCKDGG---ELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCP 56 (61)
T ss_dssp SCSSCTTTCCCS---SCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTT
T ss_pred CCCcCCCCCCCC---CEEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCc
Confidence 367899998632 222222388999999998765432 259999754
No 83
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=75.30 E-value=1.5 Score=34.07 Aligned_cols=36 Identities=25% Similarity=0.505 Sum_probs=25.2
Q ss_pred CCceeccccCcceeccC-CCCccCCCCCCCceeeccC
Q 017252 7 ASRYWCHMCSQIVDPIM-EVEIKCPFCQSGFVEEMGS 42 (375)
Q Consensus 7 ~~~ywCh~C~~~V~~~~-~~e~~CP~C~~gFvEEm~~ 42 (375)
...+||..|+..|.... ...++||.|+..|-=.-..
T Consensus 23 ~~~~wCP~C~~~~~~~~~~~~v~C~~C~~~FC~~C~~ 59 (86)
T 2ct7_A 23 PKFLWCAQCSFGFIYEREQLEATCPQCHQTFCVRCKR 59 (86)
T ss_dssp CCEECCSSSCCCEECCCSCSCEECTTTCCEECSSSCS
T ss_pred CCEeECcCCCchheecCCCCceEeCCCCCccccccCC
Confidence 35679999999874432 2448899999888644433
No 84
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=74.69 E-value=1.8 Score=32.69 Aligned_cols=28 Identities=21% Similarity=0.521 Sum_probs=24.6
Q ss_pred CCceeccccCcceeccCCCCccCCCCCC
Q 017252 7 ASRYWCHMCSQIVDPIMEVEIKCPFCQS 34 (375)
Q Consensus 7 ~~~ywCh~C~~~V~~~~~~e~~CP~C~~ 34 (375)
...|-|-.|...|.......|.||.|+.
T Consensus 26 ~v~Y~C~~CG~~~e~~~~d~irCp~CG~ 53 (70)
T 1twf_L 26 TLKYICAECSSKLSLSRTDAVRCKDCGH 53 (70)
T ss_dssp CCCEECSSSCCEECCCTTSTTCCSSSCC
T ss_pred eEEEECCCCCCcceeCCCCCccCCCCCc
Confidence 4689999999999887667799999998
No 85
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=73.75 E-value=1.8 Score=31.43 Aligned_cols=44 Identities=30% Similarity=0.606 Sum_probs=30.3
Q ss_pred ccCcccccccCCccCCCceEEc-CCCCccchhchHHHHhcC----CCCCCcCc
Q 017252 239 EETLQCSVCLDDFEIGTEAKEM-PCKHKFHSQCILPWLELH----SSCPVCRC 286 (375)
Q Consensus 239 ~~~~~C~ICle~~~~~~~~~~l-pCgH~Fh~~Ci~~WL~~~----~sCP~CR~ 286 (375)
..+..|.||... .....- .|...||..|+.+-+... -.||.|.+
T Consensus 9 ~~~~~C~vC~~~----g~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~ 57 (61)
T 2l5u_A 9 DHQDYCEVCQQG----GEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEK 57 (61)
T ss_dssp CCCSSCTTTSCC----SSEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGG
T ss_pred CCCCCCccCCCC----CcEEECCCCChhhhhhccCCCCCCCCCCceECccccc
Confidence 346789999874 222222 388999999999865432 25999965
No 86
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=72.33 E-value=1.3 Score=32.21 Aligned_cols=47 Identities=21% Similarity=0.445 Sum_probs=31.7
Q ss_pred cCcccccccCCccCCCceEEc-CCCCccchhchHHHHh-----cCCCCCCcCc
Q 017252 240 ETLQCSVCLDDFEIGTEAKEM-PCKHKFHSQCILPWLE-----LHSSCPVCRC 286 (375)
Q Consensus 240 ~~~~C~ICle~~~~~~~~~~l-pCgH~Fh~~Ci~~WL~-----~~~sCP~CR~ 286 (375)
+...|+||...+..+..-+.- .|...||..|+.--.. ....||.|+.
T Consensus 5 e~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~ 57 (64)
T 1we9_A 5 SSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSN 57 (64)
T ss_dssp SCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHT
T ss_pred CCCCCCCCCCccCCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcC
Confidence 467899999887433333333 3889999999864322 3446999964
No 87
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=71.66 E-value=2 Score=29.76 Aligned_cols=44 Identities=30% Similarity=0.522 Sum_probs=27.6
Q ss_pred ccccccCCccCCCceEEcCCCCccchhchHHHHhcC----CCCCCcCc
Q 017252 243 QCSVCLDDFEIGTEAKEMPCKHKFHSQCILPWLELH----SSCPVCRC 286 (375)
Q Consensus 243 ~C~ICle~~~~~~~~~~lpCgH~Fh~~Ci~~WL~~~----~sCP~CR~ 286 (375)
.|.||...-..+..+.=-.|...||..|+.+=|... -.||.|+.
T Consensus 2 ~C~vC~~~~~~~~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKKGEDDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSSCCSCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCCCCCCCCCCCCEEECCCCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence 588898653222222222488999999997655432 24999964
No 88
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=71.28 E-value=2.4 Score=34.52 Aligned_cols=33 Identities=24% Similarity=0.665 Sum_probs=26.9
Q ss_pred CCceeccccCcceeccCCCCccCCCCCCCceee
Q 017252 7 ASRYWCHMCSQIVDPIMEVEIKCPFCQSGFVEE 39 (375)
Q Consensus 7 ~~~ywCh~C~~~V~~~~~~e~~CP~C~~gFvEE 39 (375)
...|-|-.|.-.+.-.+....+||.|.|..||+
T Consensus 65 v~p~~C~~CG~~F~~~~~kPsrCP~CkSe~Ie~ 97 (105)
T 2gmg_A 65 IKPAQCRKCGFVFKAEINIPSRCPKCKSEWIEE 97 (105)
T ss_dssp ECCCBBTTTCCBCCCCSSCCSSCSSSCCCCBCC
T ss_pred EECcChhhCcCeecccCCCCCCCcCCCCCccCC
Confidence 467899999988844445668999999999986
No 89
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=69.66 E-value=3.1 Score=32.76 Aligned_cols=46 Identities=28% Similarity=0.547 Sum_probs=31.5
Q ss_pred ccCcccccccCCccCCCceEEcCCCCccchhchHHHHhcCC----CCCCcCcc
Q 017252 239 EETLQCSVCLDDFEIGTEAKEMPCKHKFHSQCILPWLELHS----SCPVCRCQ 287 (375)
Q Consensus 239 ~~~~~C~ICle~~~~~~~~~~lpCgH~Fh~~Ci~~WL~~~~----sCP~CR~~ 287 (375)
.....|.||...- ..+.--.|.-.||..|+.+=|.... .||.|...
T Consensus 23 ~n~~~C~vC~~~g---~LL~CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~~ 72 (88)
T 1fp0_A 23 DSATICRVCQKPG---DLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 72 (88)
T ss_dssp SSSSCCSSSCSSS---CCEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCCC
T ss_pred CCCCcCcCcCCCC---CEEECCCCCCceecccCCCCCCCCcCCCcCCccccCC
Confidence 3467899999652 3222223889999999988765422 59999754
No 90
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=68.79 E-value=5.2 Score=31.15 Aligned_cols=37 Identities=24% Similarity=0.430 Sum_probs=28.3
Q ss_pred cCcccccccCCccCCCceEEcC--CCCccchhchHHHHhc
Q 017252 240 ETLQCSVCLDDFEIGTEAKEMP--CKHKFHSQCILPWLEL 277 (375)
Q Consensus 240 ~~~~C~ICle~~~~~~~~~~lp--CgH~Fh~~Ci~~WL~~ 277 (375)
..+.|.+|.+.+++... ++-| =.|.||..|-+..++.
T Consensus 14 a~l~CtlC~erLEdtHF-VQCPsv~~HkFCFpCsr~sIk~ 52 (93)
T 2cs3_A 14 GPLCCTICHERLEDTHF-VQCPSVPSHKFCFPCSRESIKA 52 (93)
T ss_dssp CSCCCSSSCSCCSSTTS-EECSSCSSCEECHHHHHHHHHH
T ss_pred CeeEeecchhhhccCce-eeCCCccCCeeeccccHHHHHh
Confidence 36789999999954443 3444 4799999999999874
No 91
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=65.96 E-value=3.1 Score=41.06 Aligned_cols=52 Identities=25% Similarity=0.554 Sum_probs=34.0
Q ss_pred CcccccccCCccCCCceEEcCCCCccchhchHHHHh---cCC--CCCCcCcccCCCCCCC
Q 017252 241 TLQCSVCLDDFEIGTEAKEMPCKHKFHSQCILPWLE---LHS--SCPVCRCQLPADEFKP 295 (375)
Q Consensus 241 ~~~C~ICle~~~~~~~~~~lpCgH~Fh~~Ci~~WL~---~~~--sCP~CR~~l~~~~~~~ 295 (375)
.+.|+|-+..+. ..++-..|.|.-|.+- ..||. +.. .||+|.+.+....+..
T Consensus 249 SL~CPlS~~ri~--~PvRg~~C~HlQCFDl-~sfL~~~~~~~~W~CPIC~k~~~~~dL~I 305 (371)
T 3i2d_A 249 SLQCPISYTRMK--YPSKSINCKHLQCFDA-LWFLHSQLQIPTWQCPVCQIDIALENLAI 305 (371)
T ss_dssp ESBCTTTSSBCS--SEEEETTCCSSCCEEH-HHHHHHHHHSCCCBCTTTCCBCCGGGEEE
T ss_pred eecCCCcccccc--ccCcCCcCCCcceECH-HHHHHHhhcCCceeCCCCCcccCHHHeeE
Confidence 688999888882 3445556999855542 33443 333 5999998886655443
No 92
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=63.75 E-value=3.6 Score=40.45 Aligned_cols=54 Identities=17% Similarity=0.382 Sum_probs=35.3
Q ss_pred CcccccccCCccCCCceEEcCCCCccchhchHHHHh---cCC--CCCCcCcccCCCCCCCch
Q 017252 241 TLQCSVCLDDFEIGTEAKEMPCKHKFHSQCILPWLE---LHS--SCPVCRCQLPADEFKPES 297 (375)
Q Consensus 241 ~~~C~ICle~~~~~~~~~~lpCgH~Fh~~Ci~~WL~---~~~--sCP~CR~~l~~~~~~~~~ 297 (375)
.+.|+|-+..+. ..++-..|.|.-|.+ +..||. +.. .||+|.+.+....+..+.
T Consensus 215 SL~CPlS~~ri~--~P~Rg~~C~HlqCFD-l~sfL~~~~~~~~W~CPiC~k~~~~~dL~ID~ 273 (360)
T 4fo9_A 215 SLMCPLGKMRLT--IPCRAVTCTHLQCFD-AALYLQMNEKKPTWICPVCDKKAAYESLILDG 273 (360)
T ss_dssp ESBCTTTCSBCS--SEEEETTCCCCCCEE-HHHHHHHHHHSCCCBCTTTCSBCCGGGEEEBH
T ss_pred eeeCCCccceec--cCCcCCCCCCCccCC-HHHHHHHHhhCCCeECCCCCcccCHHHeEEcH
Confidence 678999888882 344555699985543 234443 333 599999988766655443
No 93
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=62.85 E-value=2.6 Score=37.78 Aligned_cols=44 Identities=27% Similarity=0.481 Sum_probs=30.4
Q ss_pred CcccccccCCccCCCceEEc-CCCCccchhchHHHHhcC----CCCCCcCccc
Q 017252 241 TLQCSVCLDDFEIGTEAKEM-PCKHKFHSQCILPWLELH----SSCPVCRCQL 288 (375)
Q Consensus 241 ~~~C~ICle~~~~~~~~~~l-pCgH~Fh~~Ci~~WL~~~----~sCP~CR~~l 288 (375)
+..|.||... .....- .|...||..|+.+.|... -.||.|+..-
T Consensus 7 ~~~C~~C~~~----g~ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~ 55 (207)
T 3u5n_A 7 EDWCAVCQNG----GDLLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDIG 55 (207)
T ss_dssp CSSBTTTCCC----EEEEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCCCCCCCCC----CceEEcCCCCCccCCccCCCCCCCCCCCCEEeCceeCcc
Confidence 5679999854 222222 388999999998877532 2599997643
No 94
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=62.28 E-value=1.5 Score=31.14 Aligned_cols=43 Identities=28% Similarity=0.530 Sum_probs=28.5
Q ss_pred cCcccccccCCccCCCceEEcCCCCccchhchHHHHhcCC----CCCCcC
Q 017252 240 ETLQCSVCLDDFEIGTEAKEMPCKHKFHSQCILPWLELHS----SCPVCR 285 (375)
Q Consensus 240 ~~~~C~ICle~~~~~~~~~~lpCgH~Fh~~Ci~~WL~~~~----sCP~CR 285 (375)
.+..|.||...- ..+.--.|...||..|+.+-|.... .||.|.
T Consensus 8 ~~~~C~vC~~~g---~ll~Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~ 54 (56)
T 2yql_A 8 HEDFCSVCRKSG---QLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQ 54 (56)
T ss_dssp SCCSCSSSCCSS---CCEECSSSSCEECSSSSSSCCCSCCCSSCCCHHHH
T ss_pred CCCCCccCCCCC---eEEEcCCCCcceECccCCCCcCCCCCCceEChhhh
Confidence 467899998742 3222224899999999987554322 487774
No 95
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=60.74 E-value=3.2 Score=36.43 Aligned_cols=45 Identities=29% Similarity=0.507 Sum_probs=30.6
Q ss_pred CcccccccCCccCCCceEEcCCCCccchhchHHHHhcC----CCCCCcCccc
Q 017252 241 TLQCSVCLDDFEIGTEAKEMPCKHKFHSQCILPWLELH----SSCPVCRCQL 288 (375)
Q Consensus 241 ~~~C~ICle~~~~~~~~~~lpCgH~Fh~~Ci~~WL~~~----~sCP~CR~~l 288 (375)
+..|.||... +....--.|...||..|+.+-|... -.||.|+..-
T Consensus 4 ~~~C~~C~~~---g~ll~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~~ 52 (184)
T 3o36_A 4 EDWCAVCQNG---GELLCCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDLS 52 (184)
T ss_dssp CSSCTTTCCC---SSCEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCccccCCCC---CeeeecCCCCcccCccccCCCCCCCCCCCEECccccCcc
Confidence 4679999854 2322222388999999998877542 2599997643
No 96
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=60.59 E-value=2.6 Score=31.52 Aligned_cols=48 Identities=19% Similarity=0.412 Sum_probs=31.9
Q ss_pred CcccccccCCccCCCceEEc-CCCCccchhchHHHHhc----CCCCCCcCcccC
Q 017252 241 TLQCSVCLDDFEIGTEAKEM-PCKHKFHSQCILPWLEL----HSSCPVCRCQLP 289 (375)
Q Consensus 241 ~~~C~ICle~~~~~~~~~~l-pCgH~Fh~~Ci~~WL~~----~~sCP~CR~~l~ 289 (375)
...|.||..... +...+.- .|...||..|+..-+.. .-.||.|+..+.
T Consensus 18 ~~~C~~C~~~~~-~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~~ 70 (75)
T 2k16_A 18 IWICPGCNKPDD-GSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKIK 70 (75)
T ss_dssp EECBTTTTBCCS-SCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHHC
T ss_pred CcCCCCCCCCCC-CCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCchh
Confidence 556999987652 2222222 38899999999765532 336999976654
No 97
>1dx8_A Rubredoxin; electron transport, zinc-substitution; NMR {Guillardia theta} SCOP: g.41.5.1 PDB: 1h7v_A
Probab=60.54 E-value=6.3 Score=29.67 Aligned_cols=36 Identities=31% Similarity=0.668 Sum_probs=26.9
Q ss_pred CCccCCCCceeccccCcceeccC----------------CCCccCCCCCC---Ccee
Q 017252 1 MDDGVAASRYWCHMCSQIVDPIM----------------EVEIKCPFCQS---GFVE 38 (375)
Q Consensus 1 m~~~~~~~~ywCh~C~~~V~~~~----------------~~e~~CP~C~~---gFvE 38 (375)
|+.+| ..|-|-.|--+..+.. ..+-+||.|.- -|..
T Consensus 1 m~~~m--~~y~C~vCGyiYd~~~Gdp~~gi~pGT~f~~lPddw~CP~Cga~K~~F~~ 55 (70)
T 1dx8_A 1 MEIDE--GKYECEACGYIYEPEKGDKFAGIPPGTPFVDLSDSFMCPACRSPKNQFKS 55 (70)
T ss_dssp CBCCS--SCEEETTTCCEECTTTCCTTTTCCSSCCGGGSCTTCBCTTTCCBGGGEEE
T ss_pred CCCCC--ceEEeCCCCEEEcCCCCCcccCcCCCCchhhCCCCCcCCCCCCCHHHceE
Confidence 77776 6899999998887642 34469999987 4554
No 98
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=58.76 E-value=10 Score=28.69 Aligned_cols=47 Identities=23% Similarity=0.528 Sum_probs=30.0
Q ss_pred CcccccccCCccCCCceEEc-CCCCccchhchHHHHh-----cCCCCCCcCccc
Q 017252 241 TLQCSVCLDDFEIGTEAKEM-PCKHKFHSQCILPWLE-----LHSSCPVCRCQL 288 (375)
Q Consensus 241 ~~~C~ICle~~~~~~~~~~l-pCgH~Fh~~Ci~~WL~-----~~~sCP~CR~~l 288 (375)
...| ||...+..+..-+.- .|...||..|+.--.. ....||.|+...
T Consensus 12 ~~~C-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~ 64 (79)
T 1wep_A 12 PVYC-LCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAVF 64 (79)
T ss_dssp CCCS-TTSCSCCSSSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTTS
T ss_pred ccEE-EcCCccCCCCceEEcCCCCCcEEeeecCcccccccCCCeEECCCccccc
Confidence 4556 898876433333333 3899999999853221 344699997644
No 99
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=57.73 E-value=4.9 Score=32.28 Aligned_cols=37 Identities=16% Similarity=0.352 Sum_probs=25.7
Q ss_pred cCcccccccCCccCCCceEEcCCCCccchhchHHHHh
Q 017252 240 ETLQCSVCLDDFEIGTEAKEMPCKHKFHSQCILPWLE 276 (375)
Q Consensus 240 ~~~~C~ICle~~~~~~~~~~lpCgH~Fh~~Ci~~WL~ 276 (375)
.+..|.||.+.-.....+.=-.|...||..|+...+.
T Consensus 6 ~~~~C~~C~~~g~~~~ll~C~~C~~~~H~~Cl~~~~~ 42 (111)
T 2ysm_A 6 SGANCAVCDSPGDLLDQFFCTTCGQHYHGMCLDIAVT 42 (111)
T ss_dssp CCSCBTTTCCCCCTTTSEECSSSCCEECTTTTTCCCC
T ss_pred CCCCCcCCCCCCCCcCCeECCCCCCCcChHHhCCccc
Confidence 4678999987642222233335999999999988764
No 100
>2con_A RUH-035 protein, NIN one binding protein; ribosome, RNA binding protein, unknown function, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.41.15.1
Probab=57.60 E-value=5.7 Score=30.67 Aligned_cols=30 Identities=17% Similarity=0.516 Sum_probs=23.9
Q ss_pred eeccccCcceeccCCCCccCCCCCCCceeecc
Q 017252 10 YWCHMCSQIVDPIMEVEIKCPFCQSGFVEEMG 41 (375)
Q Consensus 10 ywCh~C~~~V~~~~~~e~~CP~C~~gFvEEm~ 41 (375)
+.||-|-.+...+ .-..||.|+..=+.-+.
T Consensus 16 LrC~aCf~~t~~~--~k~FCp~CGn~TL~Rvs 45 (79)
T 2con_A 16 LRCHGCFKTTSDM--NRVFCGHCGNKTLKKVS 45 (79)
T ss_dssp EECSSSCCEESCS--SCCSCSSSCCSCCEEEE
T ss_pred eEecccceECCCc--ccccccccCcccceEEE
Confidence 6899999987555 46899999998776654
No 101
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=55.36 E-value=5.7 Score=31.51 Aligned_cols=45 Identities=18% Similarity=0.234 Sum_probs=28.4
Q ss_pred CcccccccCCccCCCceEEcCCCCccchhchHHHHhc---CCCCCCcCc
Q 017252 241 TLQCSVCLDDFEIGTEAKEMPCKHKFHSQCILPWLEL---HSSCPVCRC 286 (375)
Q Consensus 241 ~~~C~ICle~~~~~~~~~~lpCgH~Fh~~Ci~~WL~~---~~sCP~CR~ 286 (375)
...| ||......+..+.=-.|...||..|+..-+.. .-.||.|+.
T Consensus 28 ~vrC-iC~~~~~~~~mi~Cd~C~~w~H~~C~~~~~~~~p~~w~C~~C~~ 75 (98)
T 2lv9_A 28 VTRC-ICGFTHDDGYMICCDKCSVWQHIDCMGIDRQHIPDTYLCERCQP 75 (98)
T ss_dssp BCCC-TTSCCSCSSCEEEBTTTCBEEETTTTTCCTTSCCSSBCCTTTSS
T ss_pred CEEe-ECCCccCCCcEEEcCCCCCcCcCcCCCCCccCCCCCEECCCCcC
Confidence 4567 88776533332222238999999999764432 236999963
No 102
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=54.48 E-value=6.5 Score=31.77 Aligned_cols=46 Identities=28% Similarity=0.501 Sum_probs=28.7
Q ss_pred CcccccccCCccCCCceEEc-CCCCccchhchHHHHhcC----CCCCCcCc
Q 017252 241 TLQCSVCLDDFEIGTEAKEM-PCKHKFHSQCILPWLELH----SSCPVCRC 286 (375)
Q Consensus 241 ~~~C~ICle~~~~~~~~~~l-pCgH~Fh~~Ci~~WL~~~----~sCP~CR~ 286 (375)
-..|.||...-........- .|...||..|+.+-|... =.||.|+.
T Consensus 61 C~~C~vC~~~~~~~~~ll~Cd~C~~~yH~~Cl~p~l~~~P~~~W~C~~C~~ 111 (112)
T 3v43_A 61 CKTCSSCRDQGKNADNMLFCDSCDRGFHMECCDPPLTRMPKGMWICQICRP 111 (112)
T ss_dssp TCCBTTTCCCCCTTCCCEECTTTCCEECGGGCSSCCSSCCSSCCCCTTTSC
T ss_pred CCccccccCcCCCccceEEcCCCCCeeecccCCCCCCCCCCCCeECCCCCC
Confidence 34688888642221222222 388999999998766532 25999964
No 103
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=54.45 E-value=2.9 Score=32.94 Aligned_cols=48 Identities=27% Similarity=0.530 Sum_probs=31.2
Q ss_pred cccCcccccccCCccCCCceEEc-CCCCccchhchHHHHhcCC----CCCCcCc
Q 017252 238 IEETLQCSVCLDDFEIGTEAKEM-PCKHKFHSQCILPWLELHS----SCPVCRC 286 (375)
Q Consensus 238 ~~~~~~C~ICle~~~~~~~~~~l-pCgH~Fh~~Ci~~WL~~~~----sCP~CR~ 286 (375)
..+...|.||...-.. ...+.- .|...||..|+.+=|.... .||.|..
T Consensus 13 ~~~~~~C~vC~~~~~~-~~ll~CD~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~ 65 (92)
T 2e6r_A 13 FIDSYICQVCSRGDED-DKLLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCIL 65 (92)
T ss_dssp CCCCCCCSSSCCSGGG-GGCEECTTTCCEECSSSSSSCCSSCCSSCCCCHHHHH
T ss_pred ccCCCCCccCCCcCCC-CCEEEcCCCCchhccccCCCCcccCCCCCcCCccCcC
Confidence 3446789999976421 122222 3899999999986554322 4999965
No 104
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=53.37 E-value=4.2 Score=29.80 Aligned_cols=44 Identities=27% Similarity=0.452 Sum_probs=29.7
Q ss_pred cCcccccccCCccCCCceEEcCCCCccchhchHHHHhcC----CCCCCcCc
Q 017252 240 ETLQCSVCLDDFEIGTEAKEMPCKHKFHSQCILPWLELH----SSCPVCRC 286 (375)
Q Consensus 240 ~~~~C~ICle~~~~~~~~~~lpCgH~Fh~~Ci~~WL~~~----~sCP~CR~ 286 (375)
.+..|.||...- ..+.--.|...||..|+.+-|... -.||.|..
T Consensus 7 ~~~~C~vC~~~g---~ll~CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~ 54 (66)
T 1xwh_A 7 NEDECAVCRDGG---ELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQ 54 (66)
T ss_dssp CCCSBSSSSCCS---SCEECSSCCCEECTTTSSSCCSSCCSSCCCCHHHHH
T ss_pred CCCCCccCCCCC---CEEEcCCCChhhcccccCCCcCcCCCCCeECccccC
Confidence 467899998642 322222488999999998755432 24999964
No 105
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=52.88 E-value=8.9 Score=34.04 Aligned_cols=47 Identities=19% Similarity=0.368 Sum_probs=32.1
Q ss_pred cccccccCCccCCCc---eEEc-CCCCccchhchHHH------Hh-----cCCCCCCcCccc
Q 017252 242 LQCSVCLDDFEIGTE---AKEM-PCKHKFHSQCILPW------LE-----LHSSCPVCRCQL 288 (375)
Q Consensus 242 ~~C~ICle~~~~~~~---~~~l-pCgH~Fh~~Ci~~W------L~-----~~~sCP~CR~~l 288 (375)
..|+||...+..++. -+.- .|...||..|+.-- +. ..-.||.|+..-
T Consensus 3 ~~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~~ 64 (183)
T 3lqh_A 3 NFCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERH 64 (183)
T ss_dssp CBCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCSS
T ss_pred CcCCCCcCccCCcccCCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCCC
Confidence 469999998865542 3333 38999999997532 11 156899997643
No 106
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=51.58 E-value=4.6 Score=31.50 Aligned_cols=53 Identities=21% Similarity=0.306 Sum_probs=32.5
Q ss_pred cccCcccccccCCccC-CCceEEc-CCCCccchhchHHHHhc--CCCCCCcCcccCC
Q 017252 238 IEETLQCSVCLDDFEI-GTEAKEM-PCKHKFHSQCILPWLEL--HSSCPVCRCQLPA 290 (375)
Q Consensus 238 ~~~~~~C~ICle~~~~-~~~~~~l-pCgH~Fh~~Ci~~WL~~--~~sCP~CR~~l~~ 290 (375)
..++..|.||...-.. ....+.- .|.-.||..|+..-+.. .-.||.|......
T Consensus 22 ~~~~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p~~vP~g~W~C~~C~~~~~~ 78 (88)
T 2l43_A 22 IDEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQSRAR 78 (88)
T ss_dssp CCCCCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTCSSCCSSCCCCHHHHHHTTS
T ss_pred CCCCCcCCcCCCCCCCCCCCEEECCCCCchhhcccCCCCccCCCceECccccCccch
Confidence 4457899999975311 1122222 38899999999764322 2259999765443
No 107
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=49.99 E-value=5.8 Score=35.16 Aligned_cols=44 Identities=30% Similarity=0.522 Sum_probs=29.6
Q ss_pred CcccccccCCccCCCceEEcCCCCccchhchHHHHhcC----CCCCCcCcc
Q 017252 241 TLQCSVCLDDFEIGTEAKEMPCKHKFHSQCILPWLELH----SSCPVCRCQ 287 (375)
Q Consensus 241 ~~~C~ICle~~~~~~~~~~lpCgH~Fh~~Ci~~WL~~~----~sCP~CR~~ 287 (375)
+..|.+|...- ....--.|...||..|+.+=+... -.||.|+..
T Consensus 2 ~~~C~~C~~~g---~ll~Cd~C~~~~H~~Cl~p~l~~~p~g~W~C~~C~~~ 49 (189)
T 2ro1_A 2 ATICRVCQKPG---DLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 49 (189)
T ss_dssp CCCBTTTCCCS---SCCCCTTTCCBCCSTTSTTCCSSCCCTTCCTTTTSCS
T ss_pred CCcCccCCCCC---ceeECCCCCchhccccCCCCcccCCCCCCCCcCccCC
Confidence 35799998552 322222488999999998765432 259999764
No 108
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=48.36 E-value=4.7 Score=31.38 Aligned_cols=49 Identities=24% Similarity=0.481 Sum_probs=32.4
Q ss_pred CcccccccCCccCC-CceEEc-CCCCccchhchHHHHhc--------CCCCCCcCcccC
Q 017252 241 TLQCSVCLDDFEIG-TEAKEM-PCKHKFHSQCILPWLEL--------HSSCPVCRCQLP 289 (375)
Q Consensus 241 ~~~C~ICle~~~~~-~~~~~l-pCgH~Fh~~Ci~~WL~~--------~~sCP~CR~~l~ 289 (375)
...|.||...-... ...+.- .|...||..|+.+-|.. .-.|+.|.....
T Consensus 16 ~~~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~~~ 74 (88)
T 1wev_A 16 GLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQMK 74 (88)
T ss_dssp CCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHHHC
T ss_pred CCcCCCCCCCCCCCCCceEECCCCCCeEcCccCCCcccccccCCCCCCeeCccccchhh
Confidence 67899999763211 222222 38999999999986642 225999976544
No 109
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=47.34 E-value=5.1 Score=30.60 Aligned_cols=41 Identities=32% Similarity=0.673 Sum_probs=25.5
Q ss_pred ccccccCCccCCCceEEc---CCCCccchhchHHHHhcC-----CCCCCcCc
Q 017252 243 QCSVCLDDFEIGTEAKEM---PCKHKFHSQCILPWLELH-----SSCPVCRC 286 (375)
Q Consensus 243 ~C~ICle~~~~~~~~~~l---pCgH~Fh~~Ci~~WL~~~-----~sCP~CR~ 286 (375)
.|.||...- ..-..| .|...||..|+.+-|... =.||.|+.
T Consensus 28 ~C~vC~~~~---d~~~ll~CD~C~~~yH~~Cl~PpL~~~P~g~~W~C~~C~~ 76 (77)
T 3shb_A 28 ACHLCGGRQ---DPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 76 (77)
T ss_dssp SBTTTCCCS---CGGGEEECTTTCCEEETTTSSSCCSSCCSSSCCCCTTTC-
T ss_pred cCCccCCCC---CCcceeEeCCCCCccCcccCCCcccCCCCCCceECcCccc
Confidence 566666543 212223 388999999999766431 25888864
No 110
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=47.03 E-value=3.8 Score=34.07 Aligned_cols=47 Identities=19% Similarity=0.371 Sum_probs=30.7
Q ss_pred CcccccccCCccCCCceEEc-CCCCccchhchHHHHhcCCCCCCcCcc
Q 017252 241 TLQCSVCLDDFEIGTEAKEM-PCKHKFHSQCILPWLELHSSCPVCRCQ 287 (375)
Q Consensus 241 ~~~C~ICle~~~~~~~~~~l-pCgH~Fh~~Ci~~WL~~~~sCP~CR~~ 287 (375)
...|.+|...|..-.....- .||.+||..|..........|-.|-..
T Consensus 19 ~~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~~~~vRVC~~C~~~ 66 (120)
T 1y02_A 19 EPSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVGNGPRLCLLCQRF 66 (120)
T ss_dssp -CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC----CCEEHHHHHH
T ss_pred cCcccCcCCccccccccccCCCCCCeeCHHHhCCCCCCceECHHHHHH
Confidence 45899999998432222233 499999999988776666778888543
No 111
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=45.66 E-value=5 Score=28.73 Aligned_cols=45 Identities=31% Similarity=0.580 Sum_probs=29.9
Q ss_pred CcccccccCCccCCCceEEcCCCCccchhchHHHHhcC----CCCCCcCccc
Q 017252 241 TLQCSVCLDDFEIGTEAKEMPCKHKFHSQCILPWLELH----SSCPVCRCQL 288 (375)
Q Consensus 241 ~~~C~ICle~~~~~~~~~~lpCgH~Fh~~Ci~~WL~~~----~sCP~CR~~l 288 (375)
+..|.||... +..+.--.|...||..|+.+-|... -.||.|....
T Consensus 5 ~~~C~vC~~~---g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~ 53 (60)
T 2puy_A 5 EDFCSVCRKS---GQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQDQM 53 (60)
T ss_dssp CSSCTTTCCC---SSCEECSSSSCEECGGGSSSCCSSCCCSCCCCHHHHHHH
T ss_pred CCCCcCCCCC---CcEEEcCCCCcCEECCcCCCCcCCCCCCceEChhccChh
Confidence 5679999874 2322222489999999998755432 2499886543
No 112
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=45.24 E-value=8.5 Score=29.28 Aligned_cols=43 Identities=28% Similarity=0.589 Sum_probs=27.3
Q ss_pred ccccccCCccCCCceEEc-CCCCccchhchHHHHhc-----CCCCCCcCc
Q 017252 243 QCSVCLDDFEIGTEAKEM-PCKHKFHSQCILPWLEL-----HSSCPVCRC 286 (375)
Q Consensus 243 ~C~ICle~~~~~~~~~~l-pCgH~Fh~~Ci~~WL~~-----~~sCP~CR~ 286 (375)
.|.||...-.. ...+.- .|...||..|+.+=|.. .=.||.|..
T Consensus 28 ~C~vC~~~~~~-~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 76 (77)
T 2e6s_A 28 SCRVCGGKHEP-NMQLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSCKT 76 (77)
T ss_dssp SCSSSCCCCCS-TTEEECSSSCCEEETTSSSSCCSSCCCSSCCCCTTTCC
T ss_pred CCcCcCCcCCC-CCEEEcCCCCccccccccCCCccCCCCCCCcCCcCccC
Confidence 78888864321 222222 38899999999865542 225888854
No 113
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=43.98 E-value=17 Score=28.20 Aligned_cols=36 Identities=19% Similarity=0.376 Sum_probs=25.8
Q ss_pred cCcccccccCCccCCCceEEc-CCCCccchhchHHHH
Q 017252 240 ETLQCSVCLDDFEIGTEAKEM-PCKHKFHSQCILPWL 275 (375)
Q Consensus 240 ~~~~C~ICle~~~~~~~~~~l-pCgH~Fh~~Ci~~WL 275 (375)
+...|.+|...|..-.....- .||++||..|...++
T Consensus 19 ~~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~~~ 55 (90)
T 3t7l_A 19 EAPNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNRKC 55 (90)
T ss_dssp GCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEEE
T ss_pred cCCcCcCCCCcccchhhCccccCCCCEECCcccCCee
Confidence 356899999999543333333 399999999987654
No 114
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=43.21 E-value=17 Score=30.07 Aligned_cols=34 Identities=18% Similarity=0.473 Sum_probs=24.4
Q ss_pred CcccccccCCccCCCceEEc-CCCCccchhchHHH
Q 017252 241 TLQCSVCLDDFEIGTEAKEM-PCKHKFHSQCILPW 274 (375)
Q Consensus 241 ~~~C~ICle~~~~~~~~~~l-pCgH~Fh~~Ci~~W 274 (375)
...|.+|...|..-.....- .||++||..|....
T Consensus 69 ~~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~~~ 103 (125)
T 1joc_A 69 VQNCMACGKGFSVTVRRHHCRQCGNIFCAECSAKN 103 (125)
T ss_dssp CCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEE
T ss_pred CCCCcCcCCccccccccccCCCCCeEEChHHhCCc
Confidence 56899999999543333333 39999999997554
No 115
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=42.61 E-value=25 Score=31.45 Aligned_cols=34 Identities=21% Similarity=0.444 Sum_probs=24.7
Q ss_pred CcccccccCCccCCCceEEcC-CCCccchhchHHH
Q 017252 241 TLQCSVCLDDFEIGTEAKEMP-CKHKFHSQCILPW 274 (375)
Q Consensus 241 ~~~C~ICle~~~~~~~~~~lp-CgH~Fh~~Ci~~W 274 (375)
...|.+|...|..-.....-. ||++||..|....
T Consensus 161 ~~~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs~~~ 195 (220)
T 1dvp_A 161 GRVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTAKQ 195 (220)
T ss_dssp CSBCTTTCCBCCSSSCCEECTTTCCEECSTTSCEE
T ss_pred CCccCCCCCccCCcccccccCCcCCEEChHHhCCe
Confidence 578999999995433333333 9999999997654
No 116
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=42.56 E-value=18 Score=25.06 Aligned_cols=43 Identities=16% Similarity=0.274 Sum_probs=27.5
Q ss_pred ccccccCCccCCCceEEc--CCCCccchhchHHHH----hcCCCCCCcC
Q 017252 243 QCSVCLDDFEIGTEAKEM--PCKHKFHSQCILPWL----ELHSSCPVCR 285 (375)
Q Consensus 243 ~C~ICle~~~~~~~~~~l--pCgH~Fh~~Ci~~WL----~~~~sCP~CR 285 (375)
.|.||...+..+..-+.- .|..-||..|+.--. ..+..||.|+
T Consensus 4 ~cc~C~~p~~~~~~mI~Cd~~C~~WfH~~Cvgl~~~~~~~~~~~C~~C~ 52 (52)
T 2kgg_A 4 AAQNCQRPCKDKVDWVQCDGGCDEWFHQVCVGVSPEMAENEDYICINCA 52 (52)
T ss_dssp SCTTCCCCCCTTCCEEECTTTTCCEEETTTTTCCHHHHHHSCCCCSCC-
T ss_pred cCCCCcCccCCCCcEEEeCCCCCccCcccccCCCccccCCCCEECCCCC
Confidence 477888877444333333 488899999975322 2455799885
No 117
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=41.23 E-value=20 Score=27.40 Aligned_cols=35 Identities=14% Similarity=0.272 Sum_probs=25.1
Q ss_pred cCcccccccCCccCCCceEEc-CCCCccchhchHHH
Q 017252 240 ETLQCSVCLDDFEIGTEAKEM-PCKHKFHSQCILPW 274 (375)
Q Consensus 240 ~~~~C~ICle~~~~~~~~~~l-pCgH~Fh~~Ci~~W 274 (375)
+...|.+|...|..-.....- .||++||..|....
T Consensus 20 ~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~ 55 (84)
T 1z2q_A 20 DAPACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRHR 55 (84)
T ss_dssp TCCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCCE
T ss_pred CCCCCcCcCCccccchhcccccCCCcEEChHHhCCe
Confidence 356899999999543333333 39999999997654
No 118
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=40.75 E-value=26 Score=26.07 Aligned_cols=42 Identities=21% Similarity=0.589 Sum_probs=30.3
Q ss_pred cccCcccccccCCccCCCceEEcCCCCccchhchHHHHhcCCCCCCcCcccC
Q 017252 238 IEETLQCSVCLDDFEIGTEAKEMPCKHKFHSQCILPWLELHSSCPVCRCQLP 289 (375)
Q Consensus 238 ~~~~~~C~ICle~~~~~~~~~~lpCgH~Fh~~Ci~~WL~~~~sCP~CR~~l~ 289 (375)
+.....|..|-..+..+..+. .-+..||..| ..|-.|+..|.
T Consensus 12 ~~~~~~C~~C~~~I~~~~~v~--a~~~~wH~~C--------F~C~~C~~~L~ 53 (80)
T 2dj7_A 12 IRGPSHCAGCKEEIKHGQSLL--ALDKQWHVSC--------FKCQTCSVILT 53 (80)
T ss_dssp CSSCSCCTTTCCCCSSSCCEE--ETTEEECTTT--------CBCSSSCCBCS
T ss_pred CCCCCCCcCcCCeeCCCeEEE--ECCccccccc--------CCcCcCCCCcC
Confidence 334678999999886554433 3577888888 46899988875
No 119
>2k2d_A Ring finger and CHY zinc finger domain- containing protein 1; zinc-binding protein, cytoplasm, metal-binding, nucleus, metal binding protein; NMR {Homo sapiens}
Probab=40.58 E-value=14 Score=28.39 Aligned_cols=33 Identities=21% Similarity=0.384 Sum_probs=23.6
Q ss_pred ceeccccCcceeccCCCCc--cCCCCCCCceeeccC
Q 017252 9 RYWCHMCSQIVDPIMEVEI--KCPFCQSGFVEEMGS 42 (375)
Q Consensus 9 ~ywCh~C~~~V~~~~~~e~--~CP~C~~gFvEEm~~ 42 (375)
.-+|.-|....... .--+ |||.|++-=...+..
T Consensus 37 ~I~CnDC~~~s~v~-~h~lg~kC~~C~SyNTr~~~G 71 (79)
T 2k2d_A 37 DILCNDCNGRSTVQ-FHILGMKCKICESYNTAQAGG 71 (79)
T ss_dssp EEEESSSCCEEEEE-CCTTCCCCTTTSCCCEEESCC
T ss_pred EEECCCCCCCccCC-ceeecccCcCCCCcCeEecCC
Confidence 46899999987554 2334 999999876665543
No 120
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=39.95 E-value=21 Score=28.12 Aligned_cols=44 Identities=27% Similarity=0.496 Sum_probs=25.9
Q ss_pred cCcccccccCCccCCCceEEcC--CC-CccchhchHHHHhc----CCCCCCcCcc
Q 017252 240 ETLQCSVCLDDFEIGTEAKEMP--CK-HKFHSQCILPWLEL----HSSCPVCRCQ 287 (375)
Q Consensus 240 ~~~~C~ICle~~~~~~~~~~lp--Cg-H~Fh~~Ci~~WL~~----~~sCP~CR~~ 287 (375)
+...| ||..... +.-+.-=. |. ..||..|+. |.. +-.||.|+..
T Consensus 35 e~~yC-iC~~~~~-g~MI~CD~~dC~~~WfH~~CVg--l~~~p~g~W~Cp~C~~~ 85 (91)
T 1weu_A 35 EPTYC-LCHQVSY-GEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQE 85 (91)
T ss_dssp CCBCS-TTCCBCC-SCCCCCSCSSCSCCCCCSTTTT--CSSCCCSSCCCTTTCCC
T ss_pred CCcEE-ECCCCCC-CCEeEecCCCCCCCCEecccCC--cCcCCCCCEECcCccCc
Confidence 35677 9988652 22111112 44 579999986 322 3369999754
No 121
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=39.42 E-value=20 Score=27.23 Aligned_cols=34 Identities=24% Similarity=0.551 Sum_probs=24.4
Q ss_pred CcccccccCCccCCCceEEc-CCCCccchhchHHH
Q 017252 241 TLQCSVCLDDFEIGTEAKEM-PCKHKFHSQCILPW 274 (375)
Q Consensus 241 ~~~C~ICle~~~~~~~~~~l-pCgH~Fh~~Ci~~W 274 (375)
...|.+|...|..-.....- .||.+||..|....
T Consensus 19 ~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~ 53 (82)
T 2yw8_A 19 ATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSNE 53 (82)
T ss_dssp CCBCTTTCCBCBTTBCCEECTTTCCEECSGGGCEE
T ss_pred CCcccCcCCcccCccccccCCCCCCEEChHHhCCe
Confidence 56799999999543333333 39999999997654
No 122
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=38.99 E-value=22 Score=27.06 Aligned_cols=33 Identities=21% Similarity=0.468 Sum_probs=23.1
Q ss_pred CcccccccCCccCCCceEEc-CCCCccchhchHH
Q 017252 241 TLQCSVCLDDFEIGTEAKEM-PCKHKFHSQCILP 273 (375)
Q Consensus 241 ~~~C~ICle~~~~~~~~~~l-pCgH~Fh~~Ci~~ 273 (375)
...|.+|...|..-.....- .||.+||..|...
T Consensus 14 ~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~ 47 (84)
T 1x4u_A 14 FGNCTGCSATFSVLKKRRSCSNCGNSFCSRCCSF 47 (84)
T ss_dssp CSSCSSSCCCCCSSSCCEECSSSCCEECTTTSCE
T ss_pred CCcCcCcCCccccchhhhhhcCCCcEEChhhcCC
Confidence 56899999999433322233 3999999999644
No 123
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=38.69 E-value=24 Score=25.62 Aligned_cols=41 Identities=17% Similarity=0.427 Sum_probs=30.1
Q ss_pred CcccccccCCccCCCceEEcCCCCccchhchHHHHhcCCCCCCcCcccCCC
Q 017252 241 TLQCSVCLDDFEIGTEAKEMPCKHKFHSQCILPWLELHSSCPVCRCQLPAD 291 (375)
Q Consensus 241 ~~~C~ICle~~~~~~~~~~lpCgH~Fh~~Ci~~WL~~~~sCP~CR~~l~~~ 291 (375)
...|..|-..+..++. +..-+..||..| ..|..|+..|...
T Consensus 9 ~~~C~~C~~~I~~~~~--v~a~~~~~H~~C--------F~C~~C~~~L~~~ 49 (76)
T 2cu8_A 9 ASKCPKCDKTVYFAEK--VSSLGKDWHKFC--------LKCERCSKTLTPG 49 (76)
T ss_dssp CCBCTTTCCBCCTTTE--EEETTEEEETTT--------CBCSSSCCBCCTT
T ss_pred CCCCcCCCCEeECCeE--EEECCeEeeCCC--------CCCCCCCCccCCC
Confidence 4579999998864443 334678899888 4599999888644
No 124
>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1
Probab=38.35 E-value=22 Score=24.53 Aligned_cols=36 Identities=22% Similarity=0.598 Sum_probs=25.3
Q ss_pred CCceeccccCcceec--------cCCCCccCCCCCCCceeeccC
Q 017252 7 ASRYWCHMCSQIVDP--------IMEVEIKCPFCQSGFVEEMGS 42 (375)
Q Consensus 7 ~~~ywCh~C~~~V~~--------~~~~e~~CP~C~~gFvEEm~~ 42 (375)
...|-|..|.+...- ..+-..+|+.|+..|...-..
T Consensus 12 ~k~~~C~~C~k~F~~~~~l~~~H~~~k~~~C~~C~k~f~~~~~~ 55 (62)
T 1vd4_A 12 RASFKCPVCSSTFTDLEANQLFDPMTGTFRCTFCHTEVEEDESA 55 (62)
T ss_dssp SSEEECSSSCCEEEHHHHHHHEETTTTEEBCSSSCCBCEECTTC
T ss_pred CCCccCCCCCchhccHHHhHhhcCCCCCEECCCCCCccccCccc
Confidence 468999999986521 112338999999999865443
No 125
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=38.34 E-value=25 Score=27.75 Aligned_cols=49 Identities=20% Similarity=0.396 Sum_probs=34.2
Q ss_pred CcccccccCCccCCCc----eEEcCCCCccchhchHHHH-hcCCCCCCcCcccC
Q 017252 241 TLQCSVCLDDFEIGTE----AKEMPCKHKFHSQCILPWL-ELHSSCPVCRCQLP 289 (375)
Q Consensus 241 ~~~C~ICle~~~~~~~----~~~lpCgH~Fh~~Ci~~WL-~~~~sCP~CR~~l~ 289 (375)
...|.||-+.+..... +.-..|+--.|+.|+.--. +....||.|+..+.
T Consensus 16 ~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYk 69 (93)
T 1weo_A 16 GQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYK 69 (93)
T ss_dssp SCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCC
T ss_pred CCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCccc
Confidence 4689999999743322 1222377788999986544 45778999988775
No 126
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=38.16 E-value=11 Score=28.10 Aligned_cols=43 Identities=28% Similarity=0.577 Sum_probs=26.1
Q ss_pred ccccccCCccCCCceEEc-CCCCccchhchHHHHhc-----CCCCCCcCc
Q 017252 243 QCSVCLDDFEIGTEAKEM-PCKHKFHSQCILPWLEL-----HSSCPVCRC 286 (375)
Q Consensus 243 ~C~ICle~~~~~~~~~~l-pCgH~Fh~~Ci~~WL~~-----~~sCP~CR~ 286 (375)
.|.||...-.. ...+.- .|...||..|+.+=|.. .=.||.|+.
T Consensus 20 ~C~~C~~~~~~-~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 68 (70)
T 3asl_A 20 ACHLCGGRQDP-DKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 68 (70)
T ss_dssp SBTTTCCCSCG-GGEEECTTTCCEEEGGGSSSCCSSCCSSSCCCCTTTSC
T ss_pred CCcCCCCcCCC-CCEEEcCCCCCceecccCCCCcCCCCCCCCcCCcCccC
Confidence 56677753211 222222 38899999999865542 225888864
No 127
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=37.72 E-value=23 Score=26.40 Aligned_cols=41 Identities=29% Similarity=0.610 Sum_probs=26.0
Q ss_pred cCcccccccCCccCCCceEEcC-----CC-CccchhchHHHHhc----CCCCCCcCcc
Q 017252 240 ETLQCSVCLDDFEIGTEAKEMP-----CK-HKFHSQCILPWLEL----HSSCPVCRCQ 287 (375)
Q Consensus 240 ~~~~C~ICle~~~~~~~~~~lp-----Cg-H~Fh~~Ci~~WL~~----~~sCP~CR~~ 287 (375)
+...| ||..... +. .+- |. ..||..|+. |.. .-.||.|+..
T Consensus 15 ~~~~C-~C~~~~~-g~---MI~CD~~~C~~~wfH~~Cvg--l~~~p~g~w~Cp~C~~~ 65 (71)
T 1wen_A 15 EPTYC-LCHQVSY-GE---MIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQE 65 (71)
T ss_dssp SCCCS-TTCCCSC-SS---EECCSCSSCSCCCEETTTTT--CSSCCSSCCCCTTTSSC
T ss_pred CCCEE-ECCCCCC-CC---EeEeeCCCCCCccEecccCC--cCcCCCCCEECCCCCcc
Confidence 35678 8988642 22 233 55 589999997 332 2359999654
No 128
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=37.48 E-value=28 Score=26.25 Aligned_cols=40 Identities=20% Similarity=0.325 Sum_probs=29.5
Q ss_pred CcccccccCCccCCCceEEcCCCCccchhchHHHHhcCCCCCCcCcccCCC
Q 017252 241 TLQCSVCLDDFEIGTEAKEMPCKHKFHSQCILPWLELHSSCPVCRCQLPAD 291 (375)
Q Consensus 241 ~~~C~ICle~~~~~~~~~~lpCgH~Fh~~Ci~~WL~~~~sCP~CR~~l~~~ 291 (375)
...|..|-..+.. ..+..-+..||..| ..|-.|...|...
T Consensus 25 ~~~C~~C~~~I~~---~~~~a~~~~~H~~C--------F~C~~C~~~L~~~ 64 (89)
T 1x64_A 25 MPLCDKCGSGIVG---AVVKARDKYRHPEC--------FVCADCNLNLKQK 64 (89)
T ss_dssp CCBCTTTCCBCCS---CCEESSSCEECTTT--------CCCSSSCCCTTTS
T ss_pred CCCcccCCCEecc---cEEEECCceECccC--------CEecCCCCCCCCC
Confidence 4679999998853 23444778899888 4689998888654
No 129
>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}
Probab=37.40 E-value=8.9 Score=25.46 Aligned_cols=32 Identities=25% Similarity=0.517 Sum_probs=20.9
Q ss_pred CCceeccccCcceecc-----------CCCCccCCCCCCCcee
Q 017252 7 ASRYWCHMCSQIVDPI-----------MEVEIKCPFCQSGFVE 38 (375)
Q Consensus 7 ~~~ywCh~C~~~V~~~-----------~~~e~~CP~C~~gFvE 38 (375)
..+|-|..|.+...-. .+...+|+.|+..|.-
T Consensus 2 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~ 44 (57)
T 3uk3_C 2 SSSRECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQ 44 (57)
T ss_dssp ---CBCTTTCCBCSCHHHHHHHHHHHHCCCCEECSSSSCEESS
T ss_pred CCCccCCCCcchhCChHHHHHHHHHcCCCCCcCCCCCcchhCC
Confidence 4579999999876221 1234789999998853
No 130
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=36.70 E-value=19 Score=26.54 Aligned_cols=38 Identities=18% Similarity=0.315 Sum_probs=28.3
Q ss_pred CcccccccCCccCCCceEEcCCCCccchhchHHHHhcCCCCCCcCcccC
Q 017252 241 TLQCSVCLDDFEIGTEAKEMPCKHKFHSQCILPWLELHSSCPVCRCQLP 289 (375)
Q Consensus 241 ~~~C~ICle~~~~~~~~~~lpCgH~Fh~~Ci~~WL~~~~sCP~CR~~l~ 289 (375)
...|..|-..+.. ..+..-+..||..|+ .|-.|+..|.
T Consensus 15 ~~~C~~C~~~I~~---~~~~a~~~~~H~~CF--------~C~~C~~~L~ 52 (79)
T 1x62_A 15 LPMCDKCGTGIVG---VFVKLRDRHRHPECY--------VCTDCGTNLK 52 (79)
T ss_dssp CCCCSSSCCCCCS---SCEECSSCEECTTTT--------SCSSSCCCHH
T ss_pred CCccccCCCCccC---cEEEECcceeCcCcC--------eeCCCCCCCC
Confidence 5689999998853 234456889999884 6889988774
No 131
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=36.68 E-value=20 Score=26.11 Aligned_cols=38 Identities=18% Similarity=0.541 Sum_probs=19.3
Q ss_pred ccccccCCccCCCceEEcCCCCccchhchHHHHhcCCCCCCcCcccCC
Q 017252 243 QCSVCLDDFEIGTEAKEMPCKHKFHSQCILPWLELHSSCPVCRCQLPA 290 (375)
Q Consensus 243 ~C~ICle~~~~~~~~~~lpCgH~Fh~~Ci~~WL~~~~sCP~CR~~l~~ 290 (375)
.|..|-..+..+..+. .-+..||..| ..|..|+..|..
T Consensus 2 ~C~~C~~~I~~~~~v~--a~~~~~H~~C--------F~C~~C~~~L~~ 39 (76)
T 1iml_A 2 KCPKCDKEVYFAERVT--SLGKDWHRPC--------LKCEKCGKTLTS 39 (76)
T ss_dssp BCTTTSSBCCGGGEEE--ETTEEEETTT--------CBCTTTCCBCCT
T ss_pred cCCCCCCEEECceEEE--ECCccccCCC--------CCccccCccCCC
Confidence 3566666553333222 2356666665 346666665543
No 132
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=36.68 E-value=22 Score=26.88 Aligned_cols=40 Identities=15% Similarity=0.311 Sum_probs=29.1
Q ss_pred CcccccccCCccCCCceEEcCCCCccchhchHHHHhcCCCCCCcCcccCCC
Q 017252 241 TLQCSVCLDDFEIGTEAKEMPCKHKFHSQCILPWLELHSSCPVCRCQLPAD 291 (375)
Q Consensus 241 ~~~C~ICle~~~~~~~~~~lpCgH~Fh~~Ci~~WL~~~~sCP~CR~~l~~~ 291 (375)
...|..|-..+. ...+..-+..||..| ..|-.|+..|...
T Consensus 25 ~~~C~~C~~~I~---~~~v~a~~~~~H~~C--------F~C~~C~~~L~~~ 64 (90)
T 2dar_A 25 TPMCAHCNQVIR---GPFLVALGKSWHPEE--------FNCAHCKNTMAYI 64 (90)
T ss_dssp CCBBSSSCCBCC---SCEEEETTEEECTTT--------CBCSSSCCBCSSS
T ss_pred CCCCccCCCEec---ceEEEECCccccccC--------CccCCCCCCCCCC
Confidence 457999999883 233445688899888 4688998888643
No 133
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=36.20 E-value=34 Score=24.26 Aligned_cols=39 Identities=23% Similarity=0.526 Sum_probs=28.0
Q ss_pred cccccccCCccCCCceEEcCCCCccchhchHHHHhcCCCCCCcCcccCCC
Q 017252 242 LQCSVCLDDFEIGTEAKEMPCKHKFHSQCILPWLELHSSCPVCRCQLPAD 291 (375)
Q Consensus 242 ~~C~ICle~~~~~~~~~~lpCgH~Fh~~Ci~~WL~~~~sCP~CR~~l~~~ 291 (375)
..|..|-..+.. ..+..-+..||..| ..|-.|+..|...
T Consensus 6 ~~C~~C~~~I~~---~~~~a~~~~~H~~C--------F~C~~C~~~L~~~ 44 (70)
T 2d8z_A 6 SGCVQCKKPITT---GGVTYREQPWHKEC--------FVCTACRKQLSGQ 44 (70)
T ss_dssp CBCSSSCCBCCS---SEEESSSSEEETTT--------SBCSSSCCBCTTS
T ss_pred CCCcccCCeecc---ceEEECccccCCCC--------CccCCCCCcCCcC
Confidence 479999988842 23445688899888 4588998887543
No 134
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=35.49 E-value=25 Score=27.21 Aligned_cols=48 Identities=19% Similarity=0.374 Sum_probs=31.2
Q ss_pred CcccccccCCccCCCceEEc-CCCCccchhchHHHHh-------cCCCCCCcCccc
Q 017252 241 TLQCSVCLDDFEIGTEAKEM-PCKHKFHSQCILPWLE-------LHSSCPVCRCQL 288 (375)
Q Consensus 241 ~~~C~ICle~~~~~~~~~~l-pCgH~Fh~~Ci~~WL~-------~~~sCP~CR~~l 288 (375)
...|.+|...|..-.....- .||.+||..|....+. ....|-.|-..|
T Consensus 9 ~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~~~~lp~~g~~~~RVC~~C~~~l 64 (88)
T 1wfk_A 9 ESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSFSALVPRAGNTQQKVCKQCHTIL 64 (88)
T ss_dssp CSBCTTTCCBCCSSSCEEECSSSCCEEETTTSCEEEEETTTTSEEEEECHHHHHHH
T ss_pred CCCCcCcCCcccCccccccCCCCCCEEChhHcCCceeccccCCCcCEECHHHHHHH
Confidence 45799999999543322333 3999999999865432 223577775544
No 135
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=34.09 E-value=37 Score=24.16 Aligned_cols=42 Identities=24% Similarity=0.455 Sum_probs=29.3
Q ss_pred CcccccccCCccCCCceEEcCCCCccchhchHHHHhcCCCCCCcCcccCCC
Q 017252 241 TLQCSVCLDDFEIGTEAKEMPCKHKFHSQCILPWLELHSSCPVCRCQLPAD 291 (375)
Q Consensus 241 ~~~C~ICle~~~~~~~~~~lpCgH~Fh~~Ci~~WL~~~~sCP~CR~~l~~~ 291 (375)
...|..|-..+.... .++..-+..||..| ..|-.|...|...
T Consensus 5 ~~~C~~C~~~I~~~~-~~~~a~~~~~H~~C--------F~C~~C~~~L~~~ 46 (72)
T 1wyh_A 5 SSGCSACGETVMPGS-RKLEYGGQTWHEHC--------FLCSGCEQPLGSR 46 (72)
T ss_dssp CCBCSSSCCBCCSSS-CEECSTTCCEETTT--------CBCTTTCCBTTTS
T ss_pred CCCCccCCCccccCc-cEEEECccccCccc--------CeECCCCCcCCCC
Confidence 357999999884322 23444688899888 4588898887643
No 136
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=34.03 E-value=13 Score=34.19 Aligned_cols=44 Identities=27% Similarity=0.553 Sum_probs=24.9
Q ss_pred cccccccCCccCCCceEEc-CCCCccchhchHHHHhc-----CCCCCCcCc
Q 017252 242 LQCSVCLDDFEIGTEAKEM-PCKHKFHSQCILPWLEL-----HSSCPVCRC 286 (375)
Q Consensus 242 ~~C~ICle~~~~~~~~~~l-pCgH~Fh~~Ci~~WL~~-----~~sCP~CR~ 286 (375)
..|.||...-.. .....- .|...||..|+.+=|.. .=.||.|..
T Consensus 175 c~C~vC~~~~~~-~~lL~CD~C~~~yH~~CL~PPL~~vP~G~~W~Cp~C~~ 224 (226)
T 3ask_A 175 CACHLCGGRQDP-DKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 224 (226)
T ss_dssp TSCSSSCCCCC---CCEECSSSCCEECSCC--CCCCSCCSSSCCCCGGGC-
T ss_pred CCCcCCCCCCCC-CCeEEcCCCCcceeCccCCCCcccCCCCCCCCCcCCcC
Confidence 368888764211 222222 38999999999975542 124999964
No 137
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=33.98 E-value=17 Score=27.18 Aligned_cols=48 Identities=21% Similarity=0.330 Sum_probs=29.6
Q ss_pred ccCcccccccCCc-cCCCceEEc-CCCCccchhchHHHHhc--CCCCCCcCc
Q 017252 239 EETLQCSVCLDDF-EIGTEAKEM-PCKHKFHSQCILPWLEL--HSSCPVCRC 286 (375)
Q Consensus 239 ~~~~~C~ICle~~-~~~~~~~~l-pCgH~Fh~~Ci~~WL~~--~~sCP~CR~ 286 (375)
.....|.||...- ......+.- .|.-.||..|+..-+.. .-.||.|+.
T Consensus 14 ~~~~~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~~~~vP~g~W~C~~C~~ 65 (71)
T 2ku3_A 14 DEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQ 65 (71)
T ss_dssp CSSCSCSSSCCCCCCSSSCEEECSSSCCEEEHHHHTCSSCCSSCCCCHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCCCccccccCCCCcCCCCCcCCccCcC
Confidence 3477899998753 111222222 38899999999754322 224888854
No 138
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=33.68 E-value=18 Score=26.91 Aligned_cols=30 Identities=17% Similarity=0.470 Sum_probs=23.2
Q ss_pred cCcccccccCCccCCCceEEcCC-CCccchhchHH
Q 017252 240 ETLQCSVCLDDFEIGTEAKEMPC-KHKFHSQCILP 273 (375)
Q Consensus 240 ~~~~C~ICle~~~~~~~~~~lpC-gH~Fh~~Ci~~ 273 (375)
+..-|.||.++- ..+-+.| +-+||..|...
T Consensus 7 e~pWC~ICneDA----tlrC~gCdgDLYC~rC~rE 37 (67)
T 2d8v_A 7 GLPWCCICNEDA----TLRCAGCDGDLYCARCFRE 37 (67)
T ss_dssp CCSSCTTTCSCC----CEEETTTTSEEECSSHHHH
T ss_pred CCCeeEEeCCCC----eEEecCCCCceehHHHHHH
Confidence 355799999984 4677778 79999999655
No 139
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A
Probab=33.65 E-value=16 Score=24.11 Aligned_cols=30 Identities=20% Similarity=0.555 Sum_probs=20.8
Q ss_pred ceeccccCcceec-----------cCCCCccCCCCCCCcee
Q 017252 9 RYWCHMCSQIVDP-----------IMEVEIKCPFCQSGFVE 38 (375)
Q Consensus 9 ~ywCh~C~~~V~~-----------~~~~e~~CP~C~~gFvE 38 (375)
.|-|..|.+...- ..+...+|+.|+..|..
T Consensus 1 p~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~ 41 (57)
T 1bbo_A 1 KYICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKT 41 (57)
T ss_dssp CCBCTTTCCBCSSHHHHHHHHHHTSSCCCEECSSSSCEESS
T ss_pred CCcCCCCcCcCCCHHHHHHHHHhcCCCCCccCCCCCchhcC
Confidence 4789999887621 11233789999999864
No 140
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=32.82 E-value=13 Score=27.01 Aligned_cols=42 Identities=21% Similarity=0.444 Sum_probs=27.7
Q ss_pred cccccccCCccCCCceEEcC-CCCccchhchHHHHhcCCCCCCc
Q 017252 242 LQCSVCLDDFEIGTEAKEMP-CKHKFHSQCILPWLELHSSCPVC 284 (375)
Q Consensus 242 ~~C~ICle~~~~~~~~~~lp-CgH~Fh~~Ci~~WL~~~~sCP~C 284 (375)
..|-.|+..|... ....-+ |++.||.+|=.-.-+.-..||-|
T Consensus 16 ~~C~~C~~~~~~~-~~y~C~~C~~~FC~dCD~fiHe~Lh~CPgC 58 (59)
T 1z60_A 16 RFCYGCQGELKDQ-HVYVCAVCQNVFCVDCDVFVHDSLHSCPGC 58 (59)
T ss_dssp CEETTTTEECTTS-EEECCTTTTCCBCHHHHHTTTTTSCSSSTT
T ss_pred CcccccCcccCCC-ccEECCccCcCcccchhHHHHhhccCCcCC
Confidence 3599999888321 112233 99999999954433455679988
No 141
>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=32.68 E-value=23 Score=24.84 Aligned_cols=32 Identities=25% Similarity=0.487 Sum_probs=22.9
Q ss_pred CCceeccccCcceec-----------cCCCCccCCCCCCCcee
Q 017252 7 ASRYWCHMCSQIVDP-----------IMEVEIKCPFCQSGFVE 38 (375)
Q Consensus 7 ~~~ywCh~C~~~V~~-----------~~~~e~~CP~C~~gFvE 38 (375)
...|-|..|.+...- ..+...+|+.|+..|..
T Consensus 12 ~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~C~~C~~~f~~ 54 (72)
T 1x6e_A 12 EKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQ 54 (72)
T ss_dssp CCCEECSSSCCEESSHHHHHHHHHGGGCSCCEECSSSCCEESS
T ss_pred CCCccCCCCCCccCCHHHHHHHHHhcCCCCCeECCCCCcccCC
Confidence 467999999987622 11234789999998864
No 142
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=32.65 E-value=13 Score=27.59 Aligned_cols=45 Identities=20% Similarity=0.274 Sum_probs=28.8
Q ss_pred CcccccccCCccCCCceEEc-CCCCccchhchHHHH----hcCCCCCCcCc
Q 017252 241 TLQCSVCLDDFEIGTEAKEM-PCKHKFHSQCILPWL----ELHSSCPVCRC 286 (375)
Q Consensus 241 ~~~C~ICle~~~~~~~~~~l-pCgH~Fh~~Ci~~WL----~~~~sCP~CR~ 286 (375)
...| ||......+..-+.- .|...||..|+.--. .....||.|+.
T Consensus 16 ~~~C-~C~~~~~~g~~mI~Cd~C~~W~H~~Cvg~~~~~~~~~~~~C~~C~~ 65 (72)
T 1wee_A 16 KVDC-KCGTKDDDGERMLACDGCGVWHHTRCIGINNADALPSKFLCFRCIE 65 (72)
T ss_dssp EECC-TTCCCSCCSSCEEECSSSCEEEETTTTTCCTTSCCCSCCCCHHHHH
T ss_pred ceEe-eCCCccCCCCcEEECCCCCCccCCeeeccCccccCCCcEECCCccC
Confidence 5678 798775444333333 388999999986432 23446999965
No 143
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=32.60 E-value=9.5 Score=32.85 Aligned_cols=46 Identities=20% Similarity=0.470 Sum_probs=29.6
Q ss_pred cCcccccccCCccCCCceEEc-CCCCccchhchHHHHh-----cCCCCCCcCc
Q 017252 240 ETLQCSVCLDDFEIGTEAKEM-PCKHKFHSQCILPWLE-----LHSSCPVCRC 286 (375)
Q Consensus 240 ~~~~C~ICle~~~~~~~~~~l-pCgH~Fh~~Ci~~WL~-----~~~sCP~CR~ 286 (375)
+...| ||......+...+.- .|...||..|+.--.. ..-.||.|+.
T Consensus 7 ~~~~C-~C~~~~~~~~~mi~Cd~C~~WfH~~Cv~~~~~~~~~~~~~~C~~C~~ 58 (174)
T 2ri7_A 7 TKLYC-ICKTPEDESKFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQCQS 58 (174)
T ss_dssp CCEET-TTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTCSSCCCHHHHH
T ss_pred CCcEe-eCCCCCCCCCCEeECCCCCchhChhhcCCchhhccCccCeecCCCcc
Confidence 45678 998875333333333 3889999999853221 2446999975
No 144
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=32.32 E-value=26 Score=29.45 Aligned_cols=47 Identities=17% Similarity=0.429 Sum_probs=29.6
Q ss_pred cCcccccccCCcc-CCC-ceEEcCCCCccchhchHHHHhc-CC---CCCCcCc
Q 017252 240 ETLQCSVCLDDFE-IGT-EAKEMPCKHKFHSQCILPWLEL-HS---SCPVCRC 286 (375)
Q Consensus 240 ~~~~C~ICle~~~-~~~-~~~~lpCgH~Fh~~Ci~~WL~~-~~---sCP~CR~ 286 (375)
....|.+|...|. ... ...-..|.|.+|..|-..-... +. .|-+|++
T Consensus 54 ~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~~~~~~~~~~~W~C~vC~k 106 (134)
T 1zbd_B 54 GVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGVETSNNRPHPVWLCKICLE 106 (134)
T ss_dssp SSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEEECCCSSSSCCEEEHHHHH
T ss_pred CCccccccCCCcccccCCCCCCCCCCcccccccCCccCCCCCccceechhhHH
Confidence 4678999999993 322 3333349999999996532111 11 3778864
No 145
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=32.23 E-value=23 Score=25.44 Aligned_cols=48 Identities=19% Similarity=0.530 Sum_probs=30.9
Q ss_pred cCcccccccCCccC-CCceEEc-CCCCccchhchHHHHh-------cCCCCCCcCcc
Q 017252 240 ETLQCSVCLDDFEI-GTEAKEM-PCKHKFHSQCILPWLE-------LHSSCPVCRCQ 287 (375)
Q Consensus 240 ~~~~C~ICle~~~~-~~~~~~l-pCgH~Fh~~Ci~~WL~-------~~~sCP~CR~~ 287 (375)
.+..|.||...... ....+.- .|...||..|+.+-|. ..-.|+.|...
T Consensus 5 ~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~ 61 (66)
T 2yt5_A 5 SSGVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFA 61 (66)
T ss_dssp CCCCBSSSCCCCCBTTBCEEECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHT
T ss_pred CCCCCCCCCCCCCCCCCCEEECCCCChHHHhhhCCCcccccccCCCCCEECCCCcCc
Confidence 36789999976422 1222222 3899999999987542 12259988653
No 146
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=31.94 E-value=8.7 Score=30.75 Aligned_cols=43 Identities=23% Similarity=0.546 Sum_probs=26.4
Q ss_pred ccccccCCccCCCceEEc-CCCCccchhchHHHHhcC----CCCCCcCc
Q 017252 243 QCSVCLDDFEIGTEAKEM-PCKHKFHSQCILPWLELH----SSCPVCRC 286 (375)
Q Consensus 243 ~C~ICle~~~~~~~~~~l-pCgH~Fh~~Ci~~WL~~~----~sCP~CR~ 286 (375)
.|.||...-.. .....- .|...||..|+.+-|... -.||.|..
T Consensus 56 ~C~~C~~~~~~-~~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~ 103 (111)
T 2ysm_A 56 VCQNCKQSGED-SKMLVCDTCDKGYHTFCLQPVMKSVPTNGWKCKNCRI 103 (111)
T ss_dssp CCTTTCCCSCC-TTEEECSSSCCEEEGGGSSSCCSSCCSSCCCCHHHHC
T ss_pred cccccCccCCC-CCeeECCCCCcHHhHHhcCCccccCCCCCcCCcCCcC
Confidence 57777765421 122222 388999999998755432 24888754
No 147
>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=31.57 E-value=18 Score=19.68 Aligned_cols=11 Identities=45% Similarity=1.096 Sum_probs=8.7
Q ss_pred ccCCCCCCCce
Q 017252 27 IKCPFCQSGFV 37 (375)
Q Consensus 27 ~~CP~C~~gFv 37 (375)
.+|+.|+..|.
T Consensus 3 ~~C~~C~~~f~ 13 (29)
T 2m0e_A 3 HKCPHCDKKFN 13 (29)
T ss_dssp CCCSSCCCCCC
T ss_pred CcCCCCCcccC
Confidence 57888988885
No 148
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=31.34 E-value=32 Score=27.49 Aligned_cols=47 Identities=19% Similarity=0.388 Sum_probs=32.1
Q ss_pred cccccccCCccCCCceEEc--CCCCccchhchHHHH---h-------cCCCCCCcCccc
Q 017252 242 LQCSVCLDDFEIGTEAKEM--PCKHKFHSQCILPWL---E-------LHSSCPVCRCQL 288 (375)
Q Consensus 242 ~~C~ICle~~~~~~~~~~l--pCgH~Fh~~Ci~~WL---~-------~~~sCP~CR~~l 288 (375)
..|.||...+......+.- .|...||..|+.--. + ..-.||.|+...
T Consensus 4 ~~C~iC~~p~~~~~~mi~Cdd~C~~WfH~~CVglt~~~~~~i~~~~~~~~~Cp~C~~~~ 62 (105)
T 2xb1_A 4 YPCGACRSEVNDDQDAILCEASCQKWFHRECTGMTESAYGLLTTEASAVWACDLCLKTK 62 (105)
T ss_dssp CBCTTTCSBCCTTSCEEECTTTTCCEEEGGGTTCCHHHHHHHHHCTTEEECCHHHHHTT
T ss_pred CCCCCCCCccCCCCCEEEecCCcccccccccCCcCHHHHHhhccCCCCCEECccccCcC
Confidence 5799999987544444444 488999999985221 0 344699997643
No 149
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=31.29 E-value=32 Score=25.48 Aligned_cols=34 Identities=15% Similarity=0.325 Sum_probs=23.6
Q ss_pred CcccccccCCccCCCceEEc-CCCCccchhchHHH
Q 017252 241 TLQCSVCLDDFEIGTEAKEM-PCKHKFHSQCILPW 274 (375)
Q Consensus 241 ~~~C~ICle~~~~~~~~~~l-pCgH~Fh~~Ci~~W 274 (375)
+..|.+|...|..-.....- .||.+||..|....
T Consensus 11 ~~~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~~~ 45 (73)
T 1vfy_A 11 SDACMICSKKFSLLNRKHHCRSCGGVFCQEHSSNS 45 (73)
T ss_dssp CSBCTTTCCBCBTTBCCEECTTTCCEECGGGSCEE
T ss_pred CCcccCCCCccCCccccccCCCCCEEEcccccCCe
Confidence 35899999999533322333 39999999997543
No 150
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=31.28 E-value=12 Score=28.15 Aligned_cols=47 Identities=21% Similarity=0.435 Sum_probs=28.7
Q ss_pred cCcccccccCCccCCCceEEc--CCCCccchhchHHHHh---------cCCCCCCcCcc
Q 017252 240 ETLQCSVCLDDFEIGTEAKEM--PCKHKFHSQCILPWLE---------LHSSCPVCRCQ 287 (375)
Q Consensus 240 ~~~~C~ICle~~~~~~~~~~l--pCgH~Fh~~Ci~~WL~---------~~~sCP~CR~~ 287 (375)
+...| ||-.....+.-+.-= .|...||..|+.---. .+..||.|+..
T Consensus 15 ~~~~C-iC~~~~~~g~MI~CD~~~C~~W~H~~CVgi~~~~~~~~~~~~~~~~C~~C~~~ 72 (78)
T 1wew_A 15 IKVRC-VCGNSLETDSMIQCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEICRLT 72 (78)
T ss_dssp CCCCC-SSCCCCCCSCEEECSSTTTCCEEEHHHHSCCCTTTCSCSCSCSSCCCHHHHHC
T ss_pred CCEEe-ECCCcCCCCCEEEECCccCCccccCEEEccccccccccccCCCCEECCCCCcc
Confidence 35678 898874333222211 4889999999853221 24569999653
No 151
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=31.03 E-value=33 Score=24.04 Aligned_cols=39 Identities=18% Similarity=0.395 Sum_probs=28.4
Q ss_pred cccccccCCccCCCceEEcCCCCccchhchHHHHhcCCCCCCcCcccCCC
Q 017252 242 LQCSVCLDDFEIGTEAKEMPCKHKFHSQCILPWLELHSSCPVCRCQLPAD 291 (375)
Q Consensus 242 ~~C~ICle~~~~~~~~~~lpCgH~Fh~~Ci~~WL~~~~sCP~CR~~l~~~ 291 (375)
..|+.|-..+. + ..+..-+..||..| ..|-.|...|...
T Consensus 6 ~~C~~C~~~I~-~--~~~~a~~~~~H~~C--------F~C~~C~~~L~~~ 44 (66)
T 1nyp_A 6 PICGACRRPIE-G--RVVNAMGKQWHVEH--------FVCAKCEKPFLGH 44 (66)
T ss_dssp CEETTTTEECC-S--CEECCTTSBEETTT--------CBCTTTCCBCSSS
T ss_pred CCCcccCCEec-c--eEEEECccccccCc--------CEECCCCCCCCCC
Confidence 57999998885 2 23445678899888 4588998888643
No 152
>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=30.96 E-value=31 Score=26.16 Aligned_cols=32 Identities=19% Similarity=0.511 Sum_probs=22.8
Q ss_pred CCceeccccCcceec-----------cCCCCccCCCCCCCcee
Q 017252 7 ASRYWCHMCSQIVDP-----------IMEVEIKCPFCQSGFVE 38 (375)
Q Consensus 7 ~~~ywCh~C~~~V~~-----------~~~~e~~CP~C~~gFvE 38 (375)
...|-|..|.+...- ..+-..+|+.|+..|..
T Consensus 26 ~~~h~C~~Cgk~F~~~~~L~~H~~~H~~~k~~~C~~C~k~F~~ 68 (85)
T 2lv2_A 26 AECHLCPVCGESFASKGAQERHLRLLHAAQVFPCKYCPATFYS 68 (85)
T ss_dssp CTTEECTTSCCEESSHHHHHHHHHTTSCSSSEECTTSSCEESS
T ss_pred CCCEECCCCCCCcCcHHHHhhhhhhccCCCccCCCCCCCEeCC
Confidence 467999999998622 11233789999999964
No 153
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=30.88 E-value=28 Score=23.67 Aligned_cols=34 Identities=26% Similarity=0.453 Sum_probs=23.1
Q ss_pred CceeccccCc-ce--eccCCCCccCCCCCCCceeeccC
Q 017252 8 SRYWCHMCSQ-IV--DPIMEVEIKCPFCQSGFVEEMGS 42 (375)
Q Consensus 8 ~~ywCh~C~~-~V--~~~~~~e~~CP~C~~gFvEEm~~ 42 (375)
..+-|-.|.. .+ .+. ..+++|+.|+--|-|+...
T Consensus 4 ~~~~CP~C~~~~l~~d~~-~gelvC~~CG~v~~e~~id 40 (50)
T 1pft_A 4 KQKVCPACESAELIYDPE-RGEIVCAKCGYVIEENIID 40 (50)
T ss_dssp SCCSCTTTSCCCEEEETT-TTEEEESSSCCBCCCCCCC
T ss_pred ccEeCcCCCCcceEEcCC-CCeEECcccCCcccccccc
Confidence 4578999965 33 333 4679999998777665544
No 154
>1ryq_A DNA-directed RNA polymerase, subunit E''; structural genomics, zinc, PSI, protein structure initiative; 1.38A {Pyrococcus furiosus} SCOP: g.41.9.3 PDB: 3qqc_E
Probab=30.80 E-value=23 Score=26.61 Aligned_cols=19 Identities=42% Similarity=0.950 Sum_probs=15.3
Q ss_pred eccccCcceeccCCCCccCCCCCC
Q 017252 11 WCHMCSQIVDPIMEVEIKCPFCQS 34 (375)
Q Consensus 11 wCh~C~~~V~~~~~~e~~CP~C~~ 34 (375)
=|-.|...| .+-.||.|++
T Consensus 13 AC~~C~~~~-----~~~~CPnC~s 31 (69)
T 1ryq_A 13 ACRHCHYIT-----SEDRCPVCGS 31 (69)
T ss_dssp EETTTCBEE-----SSSSCTTTCC
T ss_pred hHHhCCccc-----cCCcCCCccC
Confidence 488899966 4678999985
No 155
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=29.61 E-value=42 Score=23.96 Aligned_cols=42 Identities=21% Similarity=0.502 Sum_probs=29.1
Q ss_pred CcccccccCCccC--CCceEEcCCCCccchhchHHHHhcCCCCCCcCcccCCC
Q 017252 241 TLQCSVCLDDFEI--GTEAKEMPCKHKFHSQCILPWLELHSSCPVCRCQLPAD 291 (375)
Q Consensus 241 ~~~C~ICle~~~~--~~~~~~lpCgH~Fh~~Ci~~WL~~~~sCP~CR~~l~~~ 291 (375)
...|..|-..+.. ... .+..-+..||..|+ .|-.|...|...
T Consensus 5 ~~~C~~C~~~I~~~~~~~-~~~a~~~~wH~~CF--------~C~~C~~~L~~~ 48 (72)
T 1x4l_A 5 SSGCAGCTNPISGLGGTK-YISFEERQWHNDCF--------NCKKCSLSLVGR 48 (72)
T ss_dssp SCSBTTTTBCCCCSSSCS-CEECSSCEECTTTC--------BCSSSCCBCTTS
T ss_pred CCCCcCCCccccCCCCcc-eEEECCcccCcccC--------EeccCCCcCCCC
Confidence 3579999998853 222 23346888998884 688998888643
No 156
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=29.61 E-value=31 Score=24.52 Aligned_cols=40 Identities=20% Similarity=0.494 Sum_probs=28.0
Q ss_pred CcccccccCCccCCCceEEcCCCCccchhchHHHHhcCCCCCCcCcccCCC
Q 017252 241 TLQCSVCLDDFEIGTEAKEMPCKHKFHSQCILPWLELHSSCPVCRCQLPAD 291 (375)
Q Consensus 241 ~~~C~ICle~~~~~~~~~~lpCgH~Fh~~Ci~~WL~~~~sCP~CR~~l~~~ 291 (375)
...|..|-..+. +. .+..-+..||..|+ .|-.|+..|...
T Consensus 5 ~~~C~~C~~~I~-~~--~~~a~~~~~H~~CF--------~C~~C~~~L~~~ 44 (70)
T 2d8x_A 5 SSGCHQCGEFII-GR--VIKAMNNSWHPECF--------RCDLCQEVLADI 44 (70)
T ss_dssp SSBCSSSCCBCC-SC--CEEETTEEECTTTS--------BCSSSCCBCSSS
T ss_pred CCcCccCCCEec-ce--EEEECcccccccCC--------EeCCCCCcCCCC
Confidence 357999998885 22 23345778888884 688998887654
No 157
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=29.52 E-value=48 Score=24.38 Aligned_cols=40 Identities=20% Similarity=0.410 Sum_probs=29.0
Q ss_pred CcccccccCCccCCCceEEcCCCCccchhchHHHHhcCCCCCCcCcccCCC
Q 017252 241 TLQCSVCLDDFEIGTEAKEMPCKHKFHSQCILPWLELHSSCPVCRCQLPAD 291 (375)
Q Consensus 241 ~~~C~ICle~~~~~~~~~~lpCgH~Fh~~Ci~~WL~~~~sCP~CR~~l~~~ 291 (375)
...|..|-..+. +. .+..-+..||..| ..|-.|+..|...
T Consensus 15 ~~~C~~C~~~I~-~~--~v~a~~~~~H~~C--------F~C~~C~~~L~~~ 54 (79)
T 2cor_A 15 KYICQKCHAIID-EQ--PLIFKNDPYHPDH--------FNCANCGKELTAD 54 (79)
T ss_dssp CCBCTTTCCBCC-SC--CCCCSSSCCCTTT--------SBCSSSCCBCCTT
T ss_pred CCCCccCCCEec-ce--EEEECcceeCCCC--------CEeCCCCCccCCC
Confidence 467999999885 22 2334678888888 4699998888744
No 158
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=29.41 E-value=52 Score=26.28 Aligned_cols=32 Identities=25% Similarity=0.405 Sum_probs=20.8
Q ss_pred CcccccccCCcc------CCCceEEcCCCCccchhchH
Q 017252 241 TLQCSVCLDDFE------IGTEAKEMPCKHKFHSQCIL 272 (375)
Q Consensus 241 ~~~C~ICle~~~------~~~~~~~lpCgH~Fh~~Ci~ 272 (375)
...|.+|+..-. .+..+.=..|+..||..|+.
T Consensus 5 ~~~C~~C~~~~~~~~~g~~~~Ll~C~~C~~~~H~~Cl~ 42 (112)
T 3v43_A 5 IPICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLK 42 (112)
T ss_dssp CSSBTTTCCCTTCCTTSCCCCCEECTTTCCEECHHHHT
T ss_pred CccccccCCchhhCcCCCchhceEhhhcCCCCCCchhc
Confidence 457999987531 11222223499999999995
No 159
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=29.30 E-value=27 Score=31.55 Aligned_cols=34 Identities=21% Similarity=0.520 Sum_probs=25.0
Q ss_pred CcccccccCCccCCCceEEc-CCCCccchhchHHH
Q 017252 241 TLQCSVCLDDFEIGTEAKEM-PCKHKFHSQCILPW 274 (375)
Q Consensus 241 ~~~C~ICle~~~~~~~~~~l-pCgH~Fh~~Ci~~W 274 (375)
...|.+|...|..-.....- .||++||..|...+
T Consensus 164 ~~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~~~ 198 (226)
T 3zyq_A 164 AEECHRCRVQFGVMTRKHHCRACGQIFCGKCSSKY 198 (226)
T ss_dssp CSBCTTTCCBCBTTBCCEECTTTCCEECTTTCCEE
T ss_pred CCCCcCcCCCCCccccccccCCCcCEeChhhcCCc
Confidence 56899999999543333333 39999999998754
No 160
>3qt1_I DNA-directed RNA polymerases I, II, and III subun; transferase-transcription complex, RNA polymerase II, transc elongation; 4.30A {Saccharomyces cerevisiae}
Probab=29.00 E-value=35 Score=28.60 Aligned_cols=34 Identities=29% Similarity=0.705 Sum_probs=25.5
Q ss_pred CCceeccccCcceeccCCC-----CccCCCCCCCceeeccC
Q 017252 7 ASRYWCHMCSQIVDPIMEV-----EIKCPFCQSGFVEEMGS 42 (375)
Q Consensus 7 ~~~ywCh~C~~~V~~~~~~-----e~~CP~C~~gFvEEm~~ 42 (375)
+.--||-.|.-+..|.-+. -.+|+.|+ |+++++.
T Consensus 22 ~~~~FCPeCgNmL~pked~~~~~l~~~CrtCg--Y~~~~~~ 60 (133)
T 3qt1_I 22 TTFRFCRDCNNMLYPREDKENNRLLFECRTCS--YVEEAGS 60 (133)
T ss_dssp CCCCBCTTTCCBCBCCBCTTTCCBCCBCSSSC--CBCCCSC
T ss_pred cCCeeCCCCCCEeeECccCCCceeEEECCCCC--CcEEcCC
Confidence 4567999999998887432 38899995 6776654
No 161
>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=28.66 E-value=26 Score=24.61 Aligned_cols=33 Identities=21% Similarity=0.467 Sum_probs=22.9
Q ss_pred CCCceeccccCcceecc-----------CCCCccCCCCCCCcee
Q 017252 6 AASRYWCHMCSQIVDPI-----------MEVEIKCPFCQSGFVE 38 (375)
Q Consensus 6 ~~~~ywCh~C~~~V~~~-----------~~~e~~CP~C~~gFvE 38 (375)
+...|-|..|.+...-. .....+|+.|+..|..
T Consensus 14 ~~~~~~C~~C~k~f~~~~~l~~H~~~H~~~~~~~C~~C~k~f~~ 57 (74)
T 2lce_A 14 SDKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNR 57 (74)
T ss_dssp CCCSBCCTTSSCCBSCHHHHHHHHHHHCCCCSEECTTTCCEESC
T ss_pred CCCCeECCCCCceeCCHHHHHHHHHHcCCCCCEECCCCCchhCC
Confidence 35789999999876321 1223789999988854
No 162
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=28.64 E-value=13 Score=27.75 Aligned_cols=45 Identities=22% Similarity=0.425 Sum_probs=28.6
Q ss_pred CcccccccCCccCCCceEEc-CCCCccchhchHHHH---------hcCCCCCCcCcc
Q 017252 241 TLQCSVCLDDFEIGTEAKEM-PCKHKFHSQCILPWL---------ELHSSCPVCRCQ 287 (375)
Q Consensus 241 ~~~C~ICle~~~~~~~~~~l-pCgH~Fh~~Ci~~WL---------~~~~sCP~CR~~ 287 (375)
...| ||...... ..-+.- .|...||..|+.--. .....||.|+..
T Consensus 16 ~~~C-~C~~~~~~-~~MI~Cd~C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~~ 70 (76)
T 1wem_A 16 ALYC-ICRQPHNN-RFMICCDRCEEWFHGDCVGISEARGRLLERNGEDYICPNCTIL 70 (76)
T ss_dssp CCCS-TTCCCCCS-SCEEECSSSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHHH
T ss_pred CCEE-ECCCccCC-CCEEEeCCCCCcEeCeEEccchhhhhhccCCCCeEECcCCcCc
Confidence 4567 89887642 222222 389999999985321 135679999653
No 163
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=28.27 E-value=35 Score=25.05 Aligned_cols=39 Identities=28% Similarity=0.651 Sum_probs=27.8
Q ss_pred cccccccCCccCCCceEEcCCCCccchhchHHHHhcCCCCCCcCcccCCC
Q 017252 242 LQCSVCLDDFEIGTEAKEMPCKHKFHSQCILPWLELHSSCPVCRCQLPAD 291 (375)
Q Consensus 242 ~~C~ICle~~~~~~~~~~lpCgH~Fh~~Ci~~WL~~~~sCP~CR~~l~~~ 291 (375)
..|+.|-..+. +. .+..-+..||..| ..|-.|+..|...
T Consensus 16 ~~C~~C~~~I~-~~--~v~a~~~~wH~~C--------F~C~~C~~~L~~~ 54 (81)
T 1v6g_A 16 TRCFSCDQFIE-GE--VVSALGKTYHPDC--------FVCAVCRLPFPPG 54 (81)
T ss_dssp CBCTTTCCBCC-SC--CEEETTEEECTTT--------SSCSSSCCCCCSS
T ss_pred CcCccccCEec-cc--eEEECCceeCccC--------CccccCCCCCCCC
Confidence 47999999885 22 2334678888888 4688998887643
No 164
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=28.25 E-value=37 Score=24.62 Aligned_cols=37 Identities=16% Similarity=0.394 Sum_probs=26.4
Q ss_pred cccccccCCccCCCceEEcCCCCccchhchHHHHhcCCCCCCcCcccC
Q 017252 242 LQCSVCLDDFEIGTEAKEMPCKHKFHSQCILPWLELHSSCPVCRCQLP 289 (375)
Q Consensus 242 ~~C~ICle~~~~~~~~~~lpCgH~Fh~~Ci~~WL~~~~sCP~CR~~l~ 289 (375)
..|+-|-..+.. ..+..-+..||..| ..|-.|...|.
T Consensus 6 ~~C~~C~~~I~~---~~v~a~~~~wH~~C--------F~C~~C~~~L~ 42 (73)
T 1wig_A 6 SGCDSCEKYITG---RVLEAGEKHYHPSC--------ALCVRCGQMFA 42 (73)
T ss_dssp CSCSSSCCCCSS---CCBCCSSCCBCTTT--------SCCSSSCCCCC
T ss_pred CCcccCCCEecC---eeEEeCCCCCCCCc--------CEeCCCCCCCC
Confidence 468889888742 23344678889888 46888888776
No 165
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=28.24 E-value=37 Score=24.79 Aligned_cols=32 Identities=22% Similarity=0.567 Sum_probs=23.6
Q ss_pred CcccccccCCccCCCceEEc--CCCCccchhchH
Q 017252 241 TLQCSVCLDDFEIGTEAKEM--PCKHKFHSQCIL 272 (375)
Q Consensus 241 ~~~C~ICle~~~~~~~~~~l--pCgH~Fh~~Ci~ 272 (375)
...|.+|...+..+..-+.- .|.-.||..|+.
T Consensus 8 ~~~C~~C~~p~~~~~~mI~CD~~C~~WfH~~Cvg 41 (65)
T 2vpb_A 8 VYPCGICTNEVNDDQDAILCEASCQKWFHRICTG 41 (65)
T ss_dssp -CBCTTTCSBCCTTSCEEEBTTTTCCEEEHHHHT
T ss_pred cCcCccCCCccCCCCCeEecccCccccCchhccC
Confidence 56899999988555544444 589999999974
No 166
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=28.24 E-value=12 Score=36.50 Aligned_cols=48 Identities=19% Similarity=0.398 Sum_probs=0.0
Q ss_pred CcccccccCCccCCCceEE-cCCCCccchhchHHHHh-------cCCCCCCcCccc
Q 017252 241 TLQCSVCLDDFEIGTEAKE-MPCKHKFHSQCILPWLE-------LHSSCPVCRCQL 288 (375)
Q Consensus 241 ~~~C~ICle~~~~~~~~~~-lpCgH~Fh~~Ci~~WL~-------~~~sCP~CR~~l 288 (375)
...|.+|...|..-..... -.||++||..|...++. ....|-.|-..+
T Consensus 375 ~~~c~~c~~~f~~~~r~h~Cr~Cg~~~C~~Cs~~~~~~~~~~~~~~rvC~~C~~~l 430 (434)
T 3mpx_A 375 VMMCMNCGCDFSLTLRRHHCHACGKIVCRNCSRNKYPLKYLKDRMAKVCDGCFGEL 430 (434)
T ss_dssp --------------------------------------------------------
T ss_pred CCcCCCcCCCCCCcchhhhcccCcCEeehhhCCCeeeCCCCCCCcCEecHHHHHHH
Confidence 5689999999843221122 23999999999876542 133577775444
No 167
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=28.14 E-value=37 Score=28.84 Aligned_cols=42 Identities=26% Similarity=0.462 Sum_probs=29.8
Q ss_pred CcccccccCCccCCCceEEc-CCCCccchhchHHHHh---------c--CCCCCCcCc
Q 017252 241 TLQCSVCLDDFEIGTEAKEM-PCKHKFHSQCILPWLE---------L--HSSCPVCRC 286 (375)
Q Consensus 241 ~~~C~ICle~~~~~~~~~~l-pCgH~Fh~~Ci~~WL~---------~--~~sCP~CR~ 286 (375)
+..|.||.+-= . ...- .|-..||..||.+-|. . .=.||+|+.
T Consensus 63 ~d~C~vC~~GG---~-LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~ 116 (142)
T 2lbm_A 63 DEQCRWCAEGG---N-LICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHP 116 (142)
T ss_dssp BCSCSSSCCCS---S-EEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCC
T ss_pred CCeecccCCCC---c-EEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccC
Confidence 67899999753 2 2222 4899999999997663 1 225999963
No 168
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=28.13 E-value=5.4 Score=32.41 Aligned_cols=46 Identities=20% Similarity=0.348 Sum_probs=28.1
Q ss_pred cccccccCCccCCCceEEcCCCCccchhchHHHHhcCC----CCCCcCcc
Q 017252 242 LQCSVCLDDFEIGTEAKEMPCKHKFHSQCILPWLELHS----SCPVCRCQ 287 (375)
Q Consensus 242 ~~C~ICle~~~~~~~~~~lpCgH~Fh~~Ci~~WL~~~~----sCP~CR~~ 287 (375)
..|.||...-..+..+.=-.|...||..|+.+=|.... .||.|...
T Consensus 59 ~~C~~C~~~~~~~~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~~ 108 (114)
T 2kwj_A 59 KSCILCGTSENDDQLLFCDDCDRGYHMYCLNPPVAEPPEGSWSCHLCWEL 108 (114)
T ss_dssp CCCTTTTCCTTTTTEEECSSSCCEEETTTSSSCCSSCCSSCCCCHHHHHH
T ss_pred CccCcccccCCCCceEEcCCCCccccccccCCCccCCCCCCeECccccch
Confidence 46888877542222222224889999999987554322 48888543
No 169
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=27.93 E-value=18 Score=26.08 Aligned_cols=37 Identities=30% Similarity=0.599 Sum_probs=23.9
Q ss_pred CcccccccCCccCCCceEEcC-----CCCccchhchHHHHhc
Q 017252 241 TLQCSVCLDDFEIGTEAKEMP-----CKHKFHSQCILPWLEL 277 (375)
Q Consensus 241 ~~~C~ICle~~~~~~~~~~lp-----CgH~Fh~~Ci~~WL~~ 277 (375)
...|+-|.-.++....-..|. |++.||..|..+|...
T Consensus 6 ~k~CP~C~~~Iek~~GCnhmtC~~~~C~~~FCw~C~~~~~~~ 47 (60)
T 1wd2_A 6 TKECPKCHVTIEKDGGCNHMVCRNQNCKAEFCWVCLGPWEPH 47 (60)
T ss_dssp CCCCTTTCCCCSSCCSCCSSSCCSSGGGSCCSSSSCSCSGGG
T ss_pred ceECcCCCCeeEeCCCCCcEEECCCCcCCEEeeCcCCCcccC
Confidence 346888877774433222222 7788888888888643
No 170
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=27.88 E-value=60 Score=24.00 Aligned_cols=43 Identities=21% Similarity=0.413 Sum_probs=30.2
Q ss_pred cCcccccccCCccCCCceEEcCCCCccchhchHHHHhcCCCCCCcCcccCCCC
Q 017252 240 ETLQCSVCLDDFEIGTEAKEMPCKHKFHSQCILPWLELHSSCPVCRCQLPADE 292 (375)
Q Consensus 240 ~~~~C~ICle~~~~~~~~~~lpCgH~Fh~~Ci~~WL~~~~sCP~CR~~l~~~~ 292 (375)
....|..|-..+...+.+. .-+..||..| ..|-.|+..|....
T Consensus 14 ~~~~C~~C~~~I~~~e~v~--a~~~~wH~~C--------F~C~~C~~~L~~~~ 56 (82)
T 2co8_A 14 AGDLCALCGEHLYVLERLC--VNGHFFHRSC--------FRCHTCEATLWPGG 56 (82)
T ss_dssp SSCBCSSSCCBCCTTTBCC--BTTBCCBTTT--------CBCSSSCCBCCTTS
T ss_pred CCCCCcccCCCcccceEEE--ECCCeeCCCc--------CEEcCCCCCcCCCc
Confidence 3568999999885444332 4578899888 45888988776443
No 171
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=27.86 E-value=62 Score=22.93 Aligned_cols=39 Identities=28% Similarity=0.536 Sum_probs=26.4
Q ss_pred cccccccCCccCCCceEEcCCCCccchhchHHHHhcCCCCCCcCcccC
Q 017252 242 LQCSVCLDDFEIGTEAKEMPCKHKFHSQCILPWLELHSSCPVCRCQLP 289 (375)
Q Consensus 242 ~~C~ICle~~~~~~~~~~lpCgH~Fh~~Ci~~WL~~~~sCP~CR~~l~ 289 (375)
..|..|-..+..... .+..-+..||..| ..|-.|...|.
T Consensus 6 ~~C~~C~~~I~~~~~-~~~a~~~~~H~~C--------F~C~~C~~~L~ 44 (72)
T 1x61_A 6 SGCGGCGEDVVGDGA-GVVALDRVFHVGC--------FVCSTCRAQLR 44 (72)
T ss_dssp CCCSSSCSCCCSSSC-CEECSSSEECTTT--------CBCSSSCCBCT
T ss_pred CCCccCCCccCCCce-EEEECCCeEcccC--------CcccccCCcCC
Confidence 578889887743222 2334578888887 45888988874
No 172
>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}
Probab=27.63 E-value=18 Score=25.64 Aligned_cols=31 Identities=19% Similarity=0.585 Sum_probs=23.3
Q ss_pred CceeccccCcceeccC-----------CCCccCCCCCCCcee
Q 017252 8 SRYWCHMCSQIVDPIM-----------EVEIKCPFCQSGFVE 38 (375)
Q Consensus 8 ~~ywCh~C~~~V~~~~-----------~~e~~CP~C~~gFvE 38 (375)
.+|-|-.|.+...-.. +--.+|+.|+..|..
T Consensus 3 Kpy~C~~C~k~F~~~~~L~~H~~~Ht~ekp~~C~~C~k~F~~ 44 (60)
T 4gzn_C 3 RPFFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRD 44 (60)
T ss_dssp CCEECTTTCCEESSHHHHHHHHHHHHTCCCEECTTTCCEESS
T ss_pred CCccCCCCCCEeCCHHHHHHHHHHhCCCcCeECCCCCCCcCC
Confidence 5799999999873211 233889999999964
No 173
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=27.62 E-value=54 Score=23.91 Aligned_cols=42 Identities=17% Similarity=0.468 Sum_probs=29.7
Q ss_pred CcccccccCCccCCCceEEcCCCCccchhchHHHHhcCCCCCCcCcccCCC
Q 017252 241 TLQCSVCLDDFEIGTEAKEMPCKHKFHSQCILPWLELHSSCPVCRCQLPAD 291 (375)
Q Consensus 241 ~~~C~ICle~~~~~~~~~~lpCgH~Fh~~Ci~~WL~~~~sCP~CR~~l~~~ 291 (375)
...|..|-..+..+... +..-+..||..| ..|-.|+..|...
T Consensus 15 ~~~C~~C~~~I~~~~~~-~~a~~~~~H~~C--------F~C~~C~~~L~~~ 56 (82)
T 1x63_A 15 SPKCKGCFKAIVAGDQN-VEYKGTVWHKDC--------FTCSNCKQVIGTG 56 (82)
T ss_dssp SCBCSSSCCBCCSSSCE-EECSSCEEETTT--------CCCSSSCCCCTTS
T ss_pred CCcCccCCcccccCceE-EEECcccccccc--------CchhhCCCccCCC
Confidence 35799999988544333 334578899888 4688998887644
No 174
>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1
Probab=27.59 E-value=25 Score=23.38 Aligned_cols=30 Identities=20% Similarity=0.639 Sum_probs=20.8
Q ss_pred ceeccccCcceec-----------cCCCCccCCCCCCCcee
Q 017252 9 RYWCHMCSQIVDP-----------IMEVEIKCPFCQSGFVE 38 (375)
Q Consensus 9 ~ywCh~C~~~V~~-----------~~~~e~~CP~C~~gFvE 38 (375)
.|-|..|.+...- ..+...+|+.|+..|..
T Consensus 2 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~ 42 (60)
T 2adr_A 2 SFVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTR 42 (60)
T ss_dssp CBCCTTTCCCBSCHHHHHHHHHTTTSSCSEECTTTCCEESS
T ss_pred cCcCCCCccccCCHHHHHHHHHHhCCCCCccCCCCCCccCC
Confidence 5889999887621 11223789999998864
No 175
>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=27.50 E-value=34 Score=23.69 Aligned_cols=32 Identities=19% Similarity=0.405 Sum_probs=23.1
Q ss_pred CCceeccccCcceec-----------cCCCCccCCCCCCCcee
Q 017252 7 ASRYWCHMCSQIVDP-----------IMEVEIKCPFCQSGFVE 38 (375)
Q Consensus 7 ~~~ywCh~C~~~V~~-----------~~~~e~~CP~C~~gFvE 38 (375)
...|-|..|.+...- ......+|+.|+..|..
T Consensus 7 ~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~~~f~~ 49 (70)
T 1x5w_A 7 GHPEKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQ 49 (70)
T ss_dssp CCSEECSSSSCEESSHHHHHHHHGGGCCSCSEECSSSSCEESS
T ss_pred CCCeECCCCCcccCCHHHHHHHHHHcCCCCCEeCCCCCCccCC
Confidence 578999999987621 11233889999999864
No 176
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=26.58 E-value=6.7 Score=30.48 Aligned_cols=30 Identities=17% Similarity=0.349 Sum_probs=21.9
Q ss_pred CCceeccccCcce--eccCCCCccCCCCCCCce
Q 017252 7 ASRYWCHMCSQIV--DPIMEVEIKCPFCQSGFV 37 (375)
Q Consensus 7 ~~~ywCh~C~~~V--~~~~~~e~~CP~C~~gFv 37 (375)
-..|-|-.|.... ++.. .-.+|++|+..|.
T Consensus 25 ~~~y~Cp~CG~~~v~r~at-GiW~C~~Cg~~~a 56 (83)
T 1vq8_Z 25 NEDHACPNCGEDRVDRQGT-GIWQCSYCDYKFT 56 (83)
T ss_dssp HSCEECSSSCCEEEEEEET-TEEEETTTCCEEE
T ss_pred cccCcCCCCCCcceeccCC-CeEECCCCCCEec
Confidence 4689999999853 4552 3578999988664
No 177
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=26.47 E-value=46 Score=24.11 Aligned_cols=41 Identities=20% Similarity=0.367 Sum_probs=28.0
Q ss_pred cccccccCCccC-CCceEEcCCCCccchhchHHHHhcCCCCCCcCcccCC
Q 017252 242 LQCSVCLDDFEI-GTEAKEMPCKHKFHSQCILPWLELHSSCPVCRCQLPA 290 (375)
Q Consensus 242 ~~C~ICle~~~~-~~~~~~lpCgH~Fh~~Ci~~WL~~~~sCP~CR~~l~~ 290 (375)
..|+.|-..+.. +....+..-+..||..| ..|-.|...|..
T Consensus 6 ~~C~~C~~~I~~~g~~~~~~a~~~~wH~~C--------F~C~~C~~~L~~ 47 (76)
T 1x68_A 6 SGCVACSKPISGLTGAKFICFQDSQWHSEC--------FNCGKCSVSLVG 47 (76)
T ss_dssp CCCTTTCCCCCTTTTCCEEEETTEEEEGGG--------CBCTTTCCBCSS
T ss_pred CCCccCCCcccCCCCceeEEECCcccCccc--------CChhhCCCcCCC
Confidence 479999998853 11123344678899888 468899888753
No 178
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=26.28 E-value=16 Score=26.99 Aligned_cols=45 Identities=24% Similarity=0.502 Sum_probs=28.0
Q ss_pred cCcccccccCCccCCCceEEc-CCCCccchhchHHHHh---cCCCCCCcCc
Q 017252 240 ETLQCSVCLDDFEIGTEAKEM-PCKHKFHSQCILPWLE---LHSSCPVCRC 286 (375)
Q Consensus 240 ~~~~C~ICle~~~~~~~~~~l-pCgH~Fh~~Ci~~WL~---~~~sCP~CR~ 286 (375)
+...| ||..... +..-+.- .|...||..|+.--.. ....||.|+.
T Consensus 18 ~~~~C-iC~~~~~-~~~MIqCd~C~~WfH~~Cvgi~~~~~~~~~~C~~C~~ 66 (68)
T 3o70_A 18 GLVTC-FCMKPFA-GRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQKCRD 66 (68)
T ss_dssp TCCCS-TTCCCCT-TCCEEECTTTCCEEETTTTTCCTTSCCSSCCCHHHHT
T ss_pred CceEe-ECCCcCC-CCCEEECCCCCccccccccCcCcccCCCcEECCCCCC
Confidence 35678 9988763 2223332 3899999999864321 2346888853
No 179
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A
Probab=26.18 E-value=22 Score=19.40 Aligned_cols=12 Identities=25% Similarity=0.825 Sum_probs=9.1
Q ss_pred ccCCCCCCCcee
Q 017252 27 IKCPFCQSGFVE 38 (375)
Q Consensus 27 ~~CP~C~~gFvE 38 (375)
.+|+.|+..|..
T Consensus 3 ~~C~~C~~~f~~ 14 (29)
T 1ard_A 3 FVCEVCTRAFAR 14 (29)
T ss_dssp CBCTTTCCBCSS
T ss_pred eECCCCCcccCC
Confidence 578888888853
No 180
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Probab=26.10 E-value=26 Score=20.72 Aligned_cols=13 Identities=31% Similarity=0.912 Sum_probs=10.5
Q ss_pred CccCCCCCCCcee
Q 017252 26 EIKCPFCQSGFVE 38 (375)
Q Consensus 26 e~~CP~C~~gFvE 38 (375)
..+|+.|+..|..
T Consensus 11 ~~~C~~C~k~f~~ 23 (37)
T 1p7a_A 11 PFQCPDCDRSFSR 23 (37)
T ss_dssp SBCCTTTCCCBSS
T ss_pred CccCCCCCcccCc
Confidence 4789999998863
No 181
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=26.06 E-value=17 Score=33.42 Aligned_cols=31 Identities=19% Similarity=0.504 Sum_probs=22.3
Q ss_pred CceeccccCcceeccC------CCC-ccCCCCCCCcee
Q 017252 8 SRYWCHMCSQIVDPIM------EVE-IKCPFCQSGFVE 38 (375)
Q Consensus 8 ~~ywCh~C~~~V~~~~------~~e-~~CP~C~~gFvE 38 (375)
..--|..|.-.|.|.. ..+ +.||+|+.=-|=
T Consensus 197 ~~~~C~GC~~~lppq~~~~i~~~~~Iv~Cp~CgRIL~~ 234 (256)
T 3na7_A 197 KKQACGGCFIRLNDKIYTEVLTSGDMITCPYCGRILYA 234 (256)
T ss_dssp BTTBCTTTCCBCCHHHHHHHHHSSSCEECTTTCCEEEC
T ss_pred eCCccCCCCeeeCHHHHHHHHCCCCEEECCCCCeeEEe
Confidence 3446999999987632 334 789999986663
No 182
>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=26.06 E-value=66 Score=21.05 Aligned_cols=32 Identities=25% Similarity=0.388 Sum_probs=22.4
Q ss_pred CCCceeccccCcceec-----------c-CCCCccCCCCCCCce
Q 017252 6 AASRYWCHMCSQIVDP-----------I-MEVEIKCPFCQSGFV 37 (375)
Q Consensus 6 ~~~~ywCh~C~~~V~~-----------~-~~~e~~CP~C~~gFv 37 (375)
....|-|..|.+...- - .+-..+|+.|+..|-
T Consensus 9 ~~k~~~C~~C~k~f~~~~~L~~H~~~~H~~~k~~~C~~C~k~F~ 52 (54)
T 2eps_A 9 VGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGPS 52 (54)
T ss_dssp SSCCEECSSSCCEESSHHHHHHHHHHTSCCCCCCCSSSSCCSSC
T ss_pred CCCCeECCCCCcccCCHHHHHHHHHHhcCCCCCccCCCCCCCCC
Confidence 3577999999887511 1 122378999999985
No 183
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=25.46 E-value=49 Score=23.45 Aligned_cols=41 Identities=20% Similarity=0.398 Sum_probs=28.2
Q ss_pred cccccccCCccCCCceEEcCCCCccchhchHHHHhcCCCCCCcCcccCCC
Q 017252 242 LQCSVCLDDFEIGTEAKEMPCKHKFHSQCILPWLELHSSCPVCRCQLPAD 291 (375)
Q Consensus 242 ~~C~ICle~~~~~~~~~~lpCgH~Fh~~Ci~~WL~~~~sCP~CR~~l~~~ 291 (375)
..|..|-..+...+.. +..-+..||..| ..|-.|...|...
T Consensus 6 ~~C~~C~~~I~~~~~~-~~a~~~~~H~~C--------F~C~~C~~~L~~~ 46 (72)
T 1x4k_A 6 SGCQECKKTIMPGTRK-MEYKGSSWHETC--------FICHRCQQPIGTK 46 (72)
T ss_dssp CCBSSSCCCCCSSSCE-EEETTEEEETTT--------TCCSSSCCCCCSS
T ss_pred CCCccCCCcccCCceE-EEECcCeecccC--------CcccccCCccCCC
Confidence 4799999988543322 333677888887 4688998877644
No 184
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=25.17 E-value=21 Score=28.77 Aligned_cols=12 Identities=25% Similarity=0.861 Sum_probs=10.8
Q ss_pred ccchhchHHHHh
Q 017252 265 KFHSQCILPWLE 276 (375)
Q Consensus 265 ~Fh~~Ci~~WL~ 276 (375)
.||..|+..|+.
T Consensus 42 GFCRNCLskWy~ 53 (105)
T 2o35_A 42 GFCRNCLSNWYR 53 (105)
T ss_dssp SCCHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 499999999996
No 185
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=25.02 E-value=21 Score=28.69 Aligned_cols=12 Identities=33% Similarity=0.983 Sum_probs=10.6
Q ss_pred ccchhchHHHHh
Q 017252 265 KFHSQCILPWLE 276 (375)
Q Consensus 265 ~Fh~~Ci~~WL~ 276 (375)
.||..|+..|+.
T Consensus 41 GFCRNCLskWy~ 52 (104)
T 3fyb_A 41 DFCRNCLAKWLM 52 (104)
T ss_dssp SCCHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 499999999986
No 186
>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1
Probab=24.91 E-value=26 Score=23.81 Aligned_cols=32 Identities=28% Similarity=0.687 Sum_probs=22.7
Q ss_pred CCceeccccCcceec-------------cCCCCccCCCCCCCcee
Q 017252 7 ASRYWCHMCSQIVDP-------------IMEVEIKCPFCQSGFVE 38 (375)
Q Consensus 7 ~~~ywCh~C~~~V~~-------------~~~~e~~CP~C~~gFvE 38 (375)
...|-|-.|.+...- ..+...+|+.|+..|..
T Consensus 8 ~k~~~C~~C~k~f~~~~~l~~H~~~~H~~~~~~~~C~~C~k~f~~ 52 (66)
T 2drp_A 8 EHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTR 52 (66)
T ss_dssp TTEEECTTTCCEESSHHHHHHHHHHHSSSSCCCEECTTTCCEESC
T ss_pred CcceECCCCcchhCCHHHHHHHHHHHcCCCCcCeECCCCCCccCC
Confidence 467999999987621 11233789999998853
No 187
>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A
Probab=24.82 E-value=28 Score=18.94 Aligned_cols=12 Identities=17% Similarity=0.739 Sum_probs=9.2
Q ss_pred ccCCCCCCCcee
Q 017252 27 IKCPFCQSGFVE 38 (375)
Q Consensus 27 ~~CP~C~~gFvE 38 (375)
.+|+.|+..|..
T Consensus 3 ~~C~~C~k~f~~ 14 (30)
T 1klr_A 3 YQCQYCEFRSAD 14 (30)
T ss_dssp CCCSSSSCCCSC
T ss_pred ccCCCCCCccCC
Confidence 578888888854
No 188
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=24.76 E-value=57 Score=23.67 Aligned_cols=38 Identities=21% Similarity=0.557 Sum_probs=27.4
Q ss_pred cccccccCCccCCCceEEcCCCCccchhchHHHHhcCCCCCCcCcccCC
Q 017252 242 LQCSVCLDDFEIGTEAKEMPCKHKFHSQCILPWLELHSSCPVCRCQLPA 290 (375)
Q Consensus 242 ~~C~ICle~~~~~~~~~~lpCgH~Fh~~Ci~~WL~~~~sCP~CR~~l~~ 290 (375)
..|..|-..+... .+..-+..||..| ..|-.|+..|..
T Consensus 16 ~~C~~C~~~I~~~---~v~a~~~~~H~~C--------F~C~~C~~~L~~ 53 (80)
T 2cuq_A 16 PRCARCSKTLTQG---GVTYRDQPWHREC--------LVCTGCQTPLAG 53 (80)
T ss_dssp CCCTTTCCCCCSC---CEESSSSEECTTT--------CBCSSSCCBCTT
T ss_pred CcCCCCCCEecCc---EEEECCchhhhhh--------CCcccCCCcCCC
Confidence 5799998888432 3445678888888 468899888853
No 189
>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1
Probab=24.64 E-value=25 Score=18.91 Aligned_cols=12 Identities=50% Similarity=1.160 Sum_probs=8.5
Q ss_pred ccCCCCCCCcee
Q 017252 27 IKCPFCQSGFVE 38 (375)
Q Consensus 27 ~~CP~C~~gFvE 38 (375)
.+|+.|+..|..
T Consensus 2 ~~C~~C~k~f~~ 13 (27)
T 1znf_A 2 YKCGLCERSFVE 13 (27)
T ss_dssp CBCSSSCCBCSS
T ss_pred ccCCCCCCcCCC
Confidence 468888877753
No 190
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=24.60 E-value=1.2e+02 Score=22.67 Aligned_cols=43 Identities=19% Similarity=0.455 Sum_probs=30.8
Q ss_pred cCcccccccCCccCCCceEEcCCCCccchhchHHHHhcCCCCCCcCcccCCCC
Q 017252 240 ETLQCSVCLDDFEIGTEAKEMPCKHKFHSQCILPWLELHSSCPVCRCQLPADE 292 (375)
Q Consensus 240 ~~~~C~ICle~~~~~~~~~~lpCgH~Fh~~Ci~~WL~~~~sCP~CR~~l~~~~ 292 (375)
....|..|-..+...+ .+..-+..||..|+ .|-.|...|....
T Consensus 14 ~~~~C~~C~~~I~~~~--~v~a~~~~~H~~CF--------~C~~C~~~L~~~~ 56 (91)
T 2d8y_A 14 ARETCVECQKTVYPME--RLLANQQVFHISCF--------RCSYCNNKLSLGT 56 (91)
T ss_dssp SSCBCTTTCCBCCTTS--EEECSSSEEETTTC--------BCTTTCCBCCTTT
T ss_pred CCCcCccCCCccCCce--eEEECCCEECCCCC--------eeCCCCCCCCCCC
Confidence 3568999999885443 23457888998884 5888888776543
No 191
>2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=24.56 E-value=50 Score=22.63 Aligned_cols=35 Identities=20% Similarity=0.448 Sum_probs=24.7
Q ss_pred CCCCceeccccCccee---------ccCCCCccCC-CCCCCceee
Q 017252 5 VAASRYWCHMCSQIVD---------PIMEVEIKCP-FCQSGFVEE 39 (375)
Q Consensus 5 ~~~~~ywCh~C~~~V~---------~~~~~e~~CP-~C~~gFvEE 39 (375)
-....|-|..|.+.+. ...+..++|+ .|+..|+..
T Consensus 6 C~~~~~~C~~C~k~f~~~~L~~H~~~~~~~p~~C~~~C~k~f~~~ 50 (66)
T 2eod_A 6 SGKRTQPCTYCTKEFVFDTIQSHQYQCPRLPVACPNQCGVGTVAR 50 (66)
T ss_dssp CCCCEEECSSSCCEEEHHHHHHHHHHCSSSEEECTTCCSCCEEET
T ss_pred CCCCCeeccccCCccCHHHHHHHHHHcCCcCccCCcccCcccccH
Confidence 3457899999988763 1112337899 999999763
No 192
>2jvm_A Uncharacterized protein; alpha+beta, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Rhodobacter sphaeroides 2}
Probab=24.17 E-value=19 Score=27.78 Aligned_cols=16 Identities=19% Similarity=0.711 Sum_probs=13.4
Q ss_pred CCccCCCCCCCceeec
Q 017252 25 VEIKCPFCQSGFVEEM 40 (375)
Q Consensus 25 ~e~~CP~C~~gFvEEm 40 (375)
.+++||+|+.-|+-+=
T Consensus 52 g~~~CpYCg~~f~l~~ 67 (80)
T 2jvm_A 52 GFVECGYCDRRYIHES 67 (80)
T ss_dssp CEEECSSSSCEEEEHH
T ss_pred CeEECCCCCCEEEecC
Confidence 4589999999999763
No 193
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=24.11 E-value=39 Score=24.70 Aligned_cols=38 Identities=21% Similarity=0.498 Sum_probs=26.7
Q ss_pred cccccccCCccCCCceEEcCCCCccchhchHHHHhcCCCCCCcCcccCC
Q 017252 242 LQCSVCLDDFEIGTEAKEMPCKHKFHSQCILPWLELHSSCPVCRCQLPA 290 (375)
Q Consensus 242 ~~C~ICle~~~~~~~~~~lpCgH~Fh~~Ci~~WL~~~~sCP~CR~~l~~ 290 (375)
..|..|-..+. + ..+..-+..||..| ..|-.|...|..
T Consensus 16 ~~C~~C~~~I~-~--~~~~a~~~~~H~~C--------F~C~~C~~~L~~ 53 (81)
T 1x6a_A 16 EFCHGCSLLMT-G--PFMVAGEFKYHPEC--------FACMSCKVIIED 53 (81)
T ss_dssp CBCTTTCCBCC-S--CCBCCTTCCBCTTS--------CBCTTTCCBCCT
T ss_pred CcCccCCCCcC-c--eEEEECCceecccc--------CCccCCCCccCC
Confidence 46999998885 2 22334678888887 458899888753
No 194
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=23.83 E-value=41 Score=23.77 Aligned_cols=38 Identities=18% Similarity=0.453 Sum_probs=26.3
Q ss_pred cccccccCCccCCCceEEcCCCCccchhchHHHHhcCCCCCCcCcccCC
Q 017252 242 LQCSVCLDDFEIGTEAKEMPCKHKFHSQCILPWLELHSSCPVCRCQLPA 290 (375)
Q Consensus 242 ~~C~ICle~~~~~~~~~~lpCgH~Fh~~Ci~~WL~~~~sCP~CR~~l~~ 290 (375)
..|..|-..+.. .. +..-+..||..|+ .|-.|...|..
T Consensus 6 ~~C~~C~~~I~~-~~--~~a~~~~~H~~CF--------~C~~C~~~L~~ 43 (69)
T 2cur_A 6 SGCVKCNKAITS-GG--ITYQDQPWHADCF--------VCVTCSKKLAG 43 (69)
T ss_dssp CCCSSSCCCCCT-TC--EEETTEEECTTTT--------BCTTTCCBCTT
T ss_pred CCCcccCCEeCc-ce--EEECccccccCcC--------EECCCCCCCCC
Confidence 478889888742 22 3335778888874 58889888753
No 195
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=23.70 E-value=52 Score=22.57 Aligned_cols=28 Identities=29% Similarity=0.750 Sum_probs=21.0
Q ss_pred CceeccccCcceeccCC---------CCccCCCCCCC
Q 017252 8 SRYWCHMCSQIVDPIME---------VEIKCPFCQSG 35 (375)
Q Consensus 8 ~~ywCh~C~~~V~~~~~---------~e~~CP~C~~g 35 (375)
..|-|-.|--+..+..+ .+.+||.|+.+
T Consensus 3 ~~y~C~vCGyvyd~~~Gd~t~f~~lP~dw~CP~Cg~~ 39 (46)
T 6rxn_A 3 QKYVCNVCGYEYDPAEHDNVPFDQLPDDWCCPVCGVS 39 (46)
T ss_dssp CCEEETTTCCEECGGGGTTCCGGGSCTTCBCTTTCCB
T ss_pred CEEECCCCCeEEeCCcCCCcchhhCCCCCcCcCCCCc
Confidence 46889999988876433 34699999865
No 196
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=23.62 E-value=40 Score=27.08 Aligned_cols=37 Identities=16% Similarity=0.440 Sum_probs=20.6
Q ss_pred ccccccCCccCCCceEEcCCCCccchhchHHHHhcCCCCCCcCccc
Q 017252 243 QCSVCLDDFEIGTEAKEMPCKHKFHSQCILPWLELHSSCPVCRCQL 288 (375)
Q Consensus 243 ~C~ICle~~~~~~~~~~lpCgH~Fh~~Ci~~WL~~~~sCP~CR~~l 288 (375)
.|..|-..+.....+ ...-+..||..| ..|-.|...|
T Consensus 10 ~C~~C~~~I~~~e~~-~~a~~~~~H~~C--------F~C~~C~~~L 46 (123)
T 2l3k_A 10 LCASCDKRIRAYEMT-MRVKDKVYHLEC--------FKCAACQKHF 46 (123)
T ss_dssp CCSSSSCCCCTTCCC-CCCSSCCCCTTT--------CBCTTTCCBC
T ss_pred cccCCCCeecCCceE-EEECCccccccc--------CccccCCCCC
Confidence 577777766432222 122456677666 3466666666
No 197
>2jz8_A Uncharacterized protein BH09830; zinc binding, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Bartonella henselae str}
Probab=23.61 E-value=27 Score=27.38 Aligned_cols=17 Identities=24% Similarity=0.590 Sum_probs=14.0
Q ss_pred CCCccCCCCCCCceeec
Q 017252 24 EVEIKCPFCQSGFVEEM 40 (375)
Q Consensus 24 ~~e~~CP~C~~gFvEEm 40 (375)
..+++||+|+.-|+.+=
T Consensus 46 ~g~~~CpYCg~~y~~~~ 62 (87)
T 2jz8_A 46 TDEKICPYCSTLYRYDP 62 (87)
T ss_dssp CCEECCTTTCCEEECCT
T ss_pred CCeEECCCCCCEeEcCC
Confidence 35699999999999763
No 198
>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=23.45 E-value=37 Score=23.98 Aligned_cols=32 Identities=28% Similarity=0.601 Sum_probs=22.5
Q ss_pred CCceeccccCcceecc-----------CCCCccCCCCCCCcee
Q 017252 7 ASRYWCHMCSQIVDPI-----------MEVEIKCPFCQSGFVE 38 (375)
Q Consensus 7 ~~~ywCh~C~~~V~~~-----------~~~e~~CP~C~~gFvE 38 (375)
..+|-|..|.+...-. .....+|+.|+..|..
T Consensus 16 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~ 58 (77)
T 2cot_A 16 RRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQ 58 (77)
T ss_dssp SCSSBCSSSCCBCSCHHHHHHHHTTTCCSCSEECSSSCCEESS
T ss_pred CCCEECCCCCcccCCHHHHHHHHHHcCCCcCeeCCCCCCccCC
Confidence 4679999999886321 0223789999998864
No 199
>1wfh_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=23.38 E-value=39 Score=24.97 Aligned_cols=28 Identities=21% Similarity=0.521 Sum_probs=22.7
Q ss_pred CCceeccccCcceeccCCCCccCCCCCCCcee
Q 017252 7 ASRYWCHMCSQIVDPIMEVEIKCPFCQSGFVE 38 (375)
Q Consensus 7 ~~~ywCh~C~~~V~~~~~~e~~CP~C~~gFvE 38 (375)
.....|..|.+.|..+ -++| +|+.-|=-
T Consensus 13 ~~~~rC~~C~kkvgl~---~f~C-rCg~~FC~ 40 (64)
T 1wfh_A 13 QRPNRCTVCRKRVGLT---GFMC-RCGTTFCG 40 (64)
T ss_dssp SSCCCCTTTCCCCCTT---CEEC-SSSCEECT
T ss_pred CcCCcChhhCCccCcc---CEEe-ecCCEecc
Confidence 4678999999998755 5889 89998853
No 200
>2kn9_A Rubredoxin; metalloprotein, ssgcid, structural genomics, seattle structural genomics center for infectious electron transport, iron; NMR {Mycobacterium tuberculosis}
Probab=23.24 E-value=64 Score=24.85 Aligned_cols=28 Identities=21% Similarity=0.545 Sum_probs=21.1
Q ss_pred CceeccccCcceeccC----------------CCCccCCCCCCC
Q 017252 8 SRYWCHMCSQIVDPIM----------------EVEIKCPFCQSG 35 (375)
Q Consensus 8 ~~ywCh~C~~~V~~~~----------------~~e~~CP~C~~g 35 (375)
..|-|-.|--+..+.. ..+-+||.|+-+
T Consensus 26 ~~y~C~vCGyvYD~~~Gdp~~gI~pGT~fedlPddW~CPvCga~ 69 (81)
T 2kn9_A 26 KLFRCIQCGFEYDEALGWPEDGIAAGTRWDDIPDDWSCPDCGAA 69 (81)
T ss_dssp CEEEETTTCCEEETTTCBTTTTBCTTCCTTTSCTTCCCTTTCCC
T ss_pred ceEEeCCCCEEEcCCcCCcccCcCCCCChhHCCCCCcCCCCCCC
Confidence 5799999998887632 234689999863
No 201
>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1
Probab=22.94 E-value=28 Score=19.21 Aligned_cols=11 Identities=27% Similarity=0.917 Sum_probs=8.6
Q ss_pred ccCCCCCCCce
Q 017252 27 IKCPFCQSGFV 37 (375)
Q Consensus 27 ~~CP~C~~gFv 37 (375)
.+|+.|+..|.
T Consensus 3 ~~C~~C~k~f~ 13 (30)
T 1paa_A 3 YACGLCNRAFT 13 (30)
T ss_dssp SBCTTTCCBCS
T ss_pred cCCcccCcccC
Confidence 57888888875
No 202
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=22.87 E-value=73 Score=25.62 Aligned_cols=45 Identities=24% Similarity=0.437 Sum_probs=27.8
Q ss_pred ccCcccccccCCccCCCceEEc---CCCCccchhchHHHHhcC----CCCCCcCcccC
Q 017252 239 EETLQCSVCLDDFEIGTEAKEM---PCKHKFHSQCILPWLELH----SSCPVCRCQLP 289 (375)
Q Consensus 239 ~~~~~C~ICle~~~~~~~~~~l---pCgH~Fh~~Ci~~WL~~~----~sCP~CR~~l~ 289 (375)
..+..|.||.+. ...+.- .|-..||..|+. |... -.||.|...+.
T Consensus 13 ~~~~~C~~C~~~----G~ll~CD~~~Cp~~fH~~Cl~--L~~~P~g~W~Cp~c~C~~C 64 (107)
T 4gne_A 13 MHEDYCFQCGDG----GELVMCDKKDCPKAYHLLCLN--LTQPPYGKWECPWHQCDEC 64 (107)
T ss_dssp SSCSSCTTTCCC----SEEEECCSTTCCCEECTGGGT--CSSCCSSCCCCGGGBCTTT
T ss_pred CCCCCCCcCCCC----CcEeEECCCCCCcccccccCc--CCcCCCCCEECCCCCCCcC
Confidence 456789999843 233333 377899999987 4321 24776654443
No 203
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=22.74 E-value=38 Score=24.84 Aligned_cols=42 Identities=26% Similarity=0.457 Sum_probs=29.6
Q ss_pred CcccccccCCccCCCceEEcCCCCccchhchHHHHhcCCCCCCcCcccCCCC
Q 017252 241 TLQCSVCLDDFEIGTEAKEMPCKHKFHSQCILPWLELHSSCPVCRCQLPADE 292 (375)
Q Consensus 241 ~~~C~ICle~~~~~~~~~~lpCgH~Fh~~Ci~~WL~~~~sCP~CR~~l~~~~ 292 (375)
...|..|-..+..+.. +..-+..||..|+ .|-.|...|....
T Consensus 7 ~~~C~~C~~~I~~~~~--~~a~~~~~H~~CF--------~C~~C~~~L~~~~ 48 (81)
T 1a7i_A 7 GNKCGACGRTVYHAEE--VQCDGRSFHRCCF--------LCMVCRKNLDSTT 48 (81)
T ss_dssp -CBCSSSCCBCSSTTE--EEETTEEEESSSE--------ECSSSCCEECSSC
T ss_pred CCcCcCcCccccCcee--EEeCCcccccccC--------ccCCCCCCCCCCC
Confidence 4579999998854443 3346788998884 4888988886543
No 204
>3h0g_I DNA-directed RNA polymerases I, II, and III subunit rpabc5; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=22.64 E-value=49 Score=26.68 Aligned_cols=33 Identities=18% Similarity=0.558 Sum_probs=24.5
Q ss_pred CceeccccCcceeccCCC-----CccCCCCCCCceeeccC
Q 017252 8 SRYWCHMCSQIVDPIMEV-----EIKCPFCQSGFVEEMGS 42 (375)
Q Consensus 8 ~~ywCh~C~~~V~~~~~~-----e~~CP~C~~gFvEEm~~ 42 (375)
..-||-.|.-+..|.... -.+|+.|+ |++++++
T Consensus 3 ~m~FCp~Cgn~L~~~~~~~~~~~~~~C~~C~--y~~~~~~ 40 (113)
T 3h0g_I 3 NFQYCIECNNMLYPREDKVDRVLRLACRNCD--YSEIAAT 40 (113)
T ss_dssp CCCCCSSSCCCCEECCCTTTCCCCEECSSSC--CEECCSC
T ss_pred cceeCcCCCCEeeEcccCCCCeeEEECCCCC--CeEEcCC
Confidence 456999999998776432 38899995 6666654
No 205
>1loi_A Cyclic 3',5'-AMP specific phosphodiesterase RD1; hydrolase, C-AMP phosphodiesterase; NMR {Rattus norvegicus} SCOP: j.51.1.1
Probab=22.60 E-value=12 Score=22.09 Aligned_cols=12 Identities=42% Similarity=0.946 Sum_probs=9.9
Q ss_pred ccchhchHHHHh
Q 017252 265 KFHSQCILPWLE 276 (375)
Q Consensus 265 ~Fh~~Ci~~WL~ 276 (375)
.||..|-++||.
T Consensus 6 ffcetcskpwlv 17 (26)
T 1loi_A 6 FFCETCSKPWLV 17 (26)
T ss_dssp HHHHTSSCTTGG
T ss_pred HHHHhcCCchhh
Confidence 588999999875
No 206
>2k5c_A Uncharacterized protein PF0385; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Pyrococcus furiosus}
Probab=22.35 E-value=22 Score=27.63 Aligned_cols=11 Identities=45% Similarity=1.186 Sum_probs=9.5
Q ss_pred ccCCCCCCCce
Q 017252 27 IKCPFCQSGFV 37 (375)
Q Consensus 27 ~~CP~C~~gFv 37 (375)
.|||.|+.-|.
T Consensus 52 FkCP~CgEEFy 62 (95)
T 2k5c_A 52 FKCPVCGEEFY 62 (95)
T ss_dssp EECTTTCCEEE
T ss_pred hcCCCccHHHh
Confidence 68999998875
No 207
>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Probab=22.27 E-value=39 Score=24.63 Aligned_cols=32 Identities=16% Similarity=0.349 Sum_probs=20.3
Q ss_pred CCceeccccCcceecc-----------CCCCccCCCCCCCcee
Q 017252 7 ASRYWCHMCSQIVDPI-----------MEVEIKCPFCQSGFVE 38 (375)
Q Consensus 7 ~~~ywCh~C~~~V~~~-----------~~~e~~CP~C~~gFvE 38 (375)
...|.|..|.+...-. ....++|+.|+..|.-
T Consensus 6 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~ 48 (96)
T 2dmd_A 6 SGPHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAAD 48 (96)
T ss_dssp CCCCCBTTTTBCCCCHHHHHHHGGGCCCCCSEECSSSCCEESS
T ss_pred CcCeECCCCCCccCCHHHHHHHHHhcCCCCCEeCCCCCCccCC
Confidence 4678888888775211 0123678888877754
No 208
>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=22.19 E-value=21 Score=19.44 Aligned_cols=11 Identities=18% Similarity=0.628 Sum_probs=8.4
Q ss_pred ccCCCCCCCce
Q 017252 27 IKCPFCQSGFV 37 (375)
Q Consensus 27 ~~CP~C~~gFv 37 (375)
.+|+.|+..|.
T Consensus 4 ~~C~~C~k~f~ 14 (27)
T 2kvh_A 4 FSCSLCPQRSR 14 (27)
T ss_dssp EECSSSSCEES
T ss_pred ccCCCcChhhC
Confidence 56888888775
No 209
>1s24_A Rubredoxin 2; electron transport; NMR {Pseudomonas oleovorans} SCOP: g.41.5.1
Probab=22.19 E-value=58 Score=25.40 Aligned_cols=29 Identities=24% Similarity=0.591 Sum_probs=21.5
Q ss_pred CCceeccccCcceeccC----------------CCCccCCCCCCC
Q 017252 7 ASRYWCHMCSQIVDPIM----------------EVEIKCPFCQSG 35 (375)
Q Consensus 7 ~~~ywCh~C~~~V~~~~----------------~~e~~CP~C~~g 35 (375)
...|-|-.|--+..+.. ..+-+||.|+-+
T Consensus 33 m~~y~C~vCGyvYD~~~Gdp~~gI~pGT~fedlPddW~CPvCga~ 77 (87)
T 1s24_A 33 YLKWICITCGHIYDEALGDEAEGFTPGTRFEDIPDDWCCPDCGAT 77 (87)
T ss_dssp CCEEEETTTTEEEETTSCCTTTTCCSCCCGGGCCTTCCCSSSCCC
T ss_pred CceEECCCCCeEecCCcCCcccCcCCCCChhHCCCCCCCCCCCCC
Confidence 46899999998887642 234689999863
No 210
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=22.01 E-value=50 Score=24.18 Aligned_cols=40 Identities=20% Similarity=0.437 Sum_probs=27.5
Q ss_pred CcccccccCCccCCCceEEcCCCCccchhchHHHHhcCCCCCCcCcccCCC
Q 017252 241 TLQCSVCLDDFEIGTEAKEMPCKHKFHSQCILPWLELHSSCPVCRCQLPAD 291 (375)
Q Consensus 241 ~~~C~ICle~~~~~~~~~~lpCgH~Fh~~Ci~~WL~~~~sCP~CR~~l~~~ 291 (375)
...|+.|-..+. +. .+..-+..||..| ..|..|...|...
T Consensus 15 ~~~C~~C~~~I~-~~--~~~a~~~~~H~~C--------F~C~~C~~~L~~~ 54 (81)
T 2dlo_A 15 LEKCATCSQPIL-DR--ILRAMGKAYHPGC--------FTCVVCHRGLDGI 54 (81)
T ss_dssp CCBCTTTCCBCC-SC--CEEETTEEECTTT--------CBCSSSCCBCTTS
T ss_pred CCccccCCCeec-ce--eEEECCccccHHh--------cCcccCCCccCCC
Confidence 357888888874 22 3334677888887 4688998887633
No 211
>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=27.59 E-value=19 Score=19.45 Aligned_cols=13 Identities=31% Similarity=0.700 Sum_probs=9.9
Q ss_pred ccCCCCCCCceee
Q 017252 27 IKCPFCQSGFVEE 39 (375)
Q Consensus 27 ~~CP~C~~gFvEE 39 (375)
.+|+.|+..|...
T Consensus 3 ~~C~~C~k~f~~~ 15 (26)
T 2lvu_A 3 YVCERCGKRFVQS 15 (26)
Confidence 5788898888753
No 212
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=21.79 E-value=66 Score=23.11 Aligned_cols=42 Identities=19% Similarity=0.439 Sum_probs=28.4
Q ss_pred cccccccCCccC-C-CceEEcCCCCccchhchHHHHhcCCCCCCcCcccCCC
Q 017252 242 LQCSVCLDDFEI-G-TEAKEMPCKHKFHSQCILPWLELHSSCPVCRCQLPAD 291 (375)
Q Consensus 242 ~~C~ICle~~~~-~-~~~~~lpCgH~Fh~~Ci~~WL~~~~sCP~CR~~l~~~ 291 (375)
..|+.|-..+.. + ....+..-+..||..| ..|-.|...|...
T Consensus 16 ~~C~~C~~~I~~~g~~~~~~~a~~~~~H~~C--------F~C~~C~~~L~~~ 59 (77)
T 2egq_A 16 KKCAGCKNPITGFGKGSSVVAYEGQSWHDYC--------FHCKKCSVNLANK 59 (77)
T ss_dssp CCCSSSCCCCCCCSSCCCEEEETTEEEETTT--------CBCSSSCCBCTTS
T ss_pred ccCcccCCcccCCCCCceeEEECcceeCccc--------CEehhcCCCCCCC
Confidence 579999998853 1 1123334577899888 4699999888644
No 213
>1wfp_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=21.64 E-value=39 Score=25.68 Aligned_cols=28 Identities=29% Similarity=0.585 Sum_probs=22.6
Q ss_pred CCceeccccCcceeccCCCCccCCCCCCCcee
Q 017252 7 ASRYWCHMCSQIVDPIMEVEIKCPFCQSGFVE 38 (375)
Q Consensus 7 ~~~ywCh~C~~~V~~~~~~e~~CP~C~~gFvE 38 (375)
.....|+.|.+.|..+ -++| +|+.-|=-
T Consensus 23 ~~~~RC~~C~kkvgL~---~f~C-rCg~~FCs 50 (74)
T 1wfp_A 23 STATRCLSCNKKVGVT---GFKC-RCGSTFCG 50 (74)
T ss_dssp CCCCBCSSSCCBCTTT---CEEC-TTSCEECT
T ss_pred ccCccchhhcCccccc---ceEe-ccCCEecc
Confidence 3567999999998766 5889 89998853
No 214
>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Probab=21.54 E-value=37 Score=24.70 Aligned_cols=32 Identities=28% Similarity=0.672 Sum_probs=20.7
Q ss_pred CCceeccccCcceeccC-----------CCCccCCCCCCCcee
Q 017252 7 ASRYWCHMCSQIVDPIM-----------EVEIKCPFCQSGFVE 38 (375)
Q Consensus 7 ~~~ywCh~C~~~V~~~~-----------~~e~~CP~C~~gFvE 38 (375)
...|-|..|.+.+.-.. ....+|+.|+..|..
T Consensus 5 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~ 47 (95)
T 2yt9_A 5 SSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKR 47 (95)
T ss_dssp CSCEECSSSCCEESSSHHHHHHHHHSCSSCSEECSSSCCEESC
T ss_pred CCCeECCCCCCccCChHHHHHHHHhcCCCCCCcCCCCCCccCC
Confidence 46788888887763211 223678888877753
No 215
>1yk4_A Rubredoxin, RD; electron transport; 0.69A {Pyrococcus abyssi} PDB: 2pya_A 1yk5_A 1bq8_A 1bq9_A* 3kyu_A 3kyv_A 3kyw_A 3kyx_A 3kyy_A 3ryg_A 3rz6_A 3rzt_A 3ss2_A 1brf_A 1caa_A 1cad_A 1vcx_A 1zrp_A 1iu5_A 1iu6_A ...
Probab=21.53 E-value=59 Score=22.75 Aligned_cols=26 Identities=27% Similarity=0.754 Sum_probs=19.6
Q ss_pred ceeccccCcceecc----------------CCCCccCCCCCC
Q 017252 9 RYWCHMCSQIVDPI----------------MEVEIKCPFCQS 34 (375)
Q Consensus 9 ~ywCh~C~~~V~~~----------------~~~e~~CP~C~~ 34 (375)
.|-|-.|--+..+. +..+-+||.|+-
T Consensus 2 ~~~C~~CGyvYd~~~Gdp~~gi~pGt~f~~lP~dw~CP~Cg~ 43 (52)
T 1yk4_A 2 KLSCKICGYIYDEDEGDPDNGISPGTKFEDLPDDWVCPLCGA 43 (52)
T ss_dssp EEEESSSSCEEETTTCBGGGTBCTTCCGGGSCTTCBCTTTCC
T ss_pred cEEeCCCCeEECCCcCCcccCcCCCCCHhHCCCCCcCCCCCC
Confidence 58899998887774 234468999986
No 216
>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens}
Probab=20.94 E-value=44 Score=29.89 Aligned_cols=28 Identities=25% Similarity=0.484 Sum_probs=19.7
Q ss_pred CCceeccccCcceeccCCCCccCCCCCC
Q 017252 7 ASRYWCHMCSQIVDPIMEVEIKCPFCQS 34 (375)
Q Consensus 7 ~~~ywCh~C~~~V~~~~~~e~~CP~C~~ 34 (375)
+..--|..|...+.+.....++|+.|..
T Consensus 8 ~~~~~Cw~C~~~~~~~~~~~~fC~~c~~ 35 (207)
T 3bvo_A 8 SNYPRCWNCGGPWGPGREDRFFCPQCRA 35 (207)
T ss_dssp ---CBCSSSCCBCCSSCSCCCBCTTTCC
T ss_pred CCCCCCCCCCCCcccccccccccccccc
Confidence 4556799999876555567899999964
No 217
>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1
Probab=20.71 E-value=65 Score=23.92 Aligned_cols=31 Identities=19% Similarity=0.598 Sum_probs=18.8
Q ss_pred CceeccccCcceec-----------cCCCCccCCCCCCCcee
Q 017252 8 SRYWCHMCSQIVDP-----------IMEVEIKCPFCQSGFVE 38 (375)
Q Consensus 8 ~~ywCh~C~~~V~~-----------~~~~e~~CP~C~~gFvE 38 (375)
..|-|..|.+.+.- ......+|+.|+..|.-
T Consensus 16 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~ 57 (106)
T 2ee8_A 16 KEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRR 57 (106)
T ss_dssp CCCBCSSSCCBCSSHHHHHHHHHHHCCSCCCBCSSSCCBCSC
T ss_pred cCeECCCCCCccCCHHHHHHHHHHcCCCCCcCCCCccchhCC
Confidence 45777777776521 11233678888777754
No 218
>3lpe_B DNA-directed RNA polymerase subunit E''; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} SCOP: g.41.9.0
Probab=20.48 E-value=42 Score=24.29 Aligned_cols=18 Identities=33% Similarity=0.973 Sum_probs=13.8
Q ss_pred ccccCcceeccCCCCccCCCCCC
Q 017252 12 CHMCSQIVDPIMEVEIKCPFCQS 34 (375)
Q Consensus 12 Ch~C~~~V~~~~~~e~~CP~C~~ 34 (375)
|-.|...+... .||.|++
T Consensus 4 C~~C~~v~~~~-----~CpnC~~ 21 (59)
T 3lpe_B 4 CLKCKYLTNDE-----ICPICHS 21 (59)
T ss_dssp ETTTCBEESSS-----BCTTTCC
T ss_pred cccCCcccCCC-----CCCCCCC
Confidence 88898886332 6999986
No 219
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=20.46 E-value=66 Score=22.51 Aligned_cols=42 Identities=24% Similarity=0.563 Sum_probs=28.9
Q ss_pred CcccccccCCccCCCceEEcCCCCccchhchHHHHhcCCCCCCcCcccCCC
Q 017252 241 TLQCSVCLDDFEIGTEAKEMPCKHKFHSQCILPWLELHSSCPVCRCQLPAD 291 (375)
Q Consensus 241 ~~~C~ICle~~~~~~~~~~lpCgH~Fh~~Ci~~WL~~~~sCP~CR~~l~~~ 291 (375)
...|..|...+...+.++ ..-+..||..|+ .|-.|...|...
T Consensus 11 ~~~C~~C~~~i~~~e~~~-~~~~~~~H~~CF--------~C~~C~~~L~~~ 52 (72)
T 3f6q_B 11 SATCERCKGGFAPAEKIV-NSNGELYHEQCF--------VCAQCFQQFPEG 52 (72)
T ss_dssp TCBCTTTCCBCCTTCEEE-EETTEEEETTTS--------SCTTTCCCCGGG
T ss_pred CccchhcCccccCCceEE-EeCcCeeCcCCC--------cccCCCCCCCCC
Confidence 457999999885443332 245777898885 688898877543
No 220
>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A
Probab=20.15 E-value=25 Score=19.25 Aligned_cols=11 Identities=36% Similarity=1.053 Sum_probs=8.0
Q ss_pred ccCCCCCCCce
Q 017252 27 IKCPFCQSGFV 37 (375)
Q Consensus 27 ~~CP~C~~gFv 37 (375)
.+|+.|+..|.
T Consensus 3 ~~C~~C~k~f~ 13 (29)
T 1rik_A 3 FACPECPKRFM 13 (29)
T ss_dssp EECSSSSCEES
T ss_pred ccCCCCCchhC
Confidence 46888887775
Done!