Query 017253
Match_columns 374
No_of_seqs 163 out of 728
Neff 4.7
Searched_HMMs 46136
Date Fri Mar 29 06:57:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017253.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017253hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0674 Calreticulin [Posttran 100.0 3E-130 7E-135 946.5 27.1 352 6-360 8-363 (406)
2 PF00262 Calreticulin: Calreti 100.0 8E-123 2E-127 919.1 15.7 312 19-331 1-367 (367)
3 KOG0675 Calnexin [Posttranslat 100.0 4E-113 8E-118 865.7 25.1 333 21-355 43-439 (558)
4 PF00262 Calreticulin: Calreti 99.9 6.5E-24 1.4E-28 212.1 0.9 100 191-290 225-340 (367)
5 KOG0675 Calnexin [Posttranslat 99.8 7E-21 1.5E-25 194.7 8.3 109 190-299 270-395 (558)
6 KOG0674 Calreticulin [Posttran 99.8 1.3E-20 2.8E-25 184.2 8.6 220 47-298 74-314 (406)
7 PF06439 DUF1080: Domain of Un 68.1 39 0.00085 29.6 8.7 139 24-192 5-153 (185)
8 PLN03161 Probable xyloglucan e 52.7 1.9E+02 0.0041 29.2 11.3 26 165-191 141-166 (291)
9 PF07210 DUF1416: Protein of u 42.5 32 0.00068 28.8 3.4 29 85-114 4-32 (85)
10 PF02973 Sialidase: Sialidase, 37.7 1.1E+02 0.0024 29.0 6.6 106 71-193 18-132 (190)
11 PF10262 Rdx: Rdx family; Int 35.8 42 0.00091 26.4 3.1 22 170-191 35-56 (76)
12 PF11025 GP40: Glycoprotein GP 30.9 1.4E+02 0.0031 27.4 5.9 70 101-191 6-75 (165)
13 PF07691 PA14: PA14 domain; I 29.7 48 0.001 27.8 2.7 28 166-193 58-85 (145)
14 PF15240 Pro-rich: Proline-ric 22.9 45 0.00098 31.4 1.4 16 2-17 1-16 (179)
15 PF10106 DUF2345: Uncharacteri 21.4 74 0.0016 28.7 2.4 30 82-113 102-131 (155)
16 PF02747 PCNA_C: Proliferating 20.7 1E+02 0.0022 26.5 3.0 21 85-112 105-125 (128)
No 1
>KOG0674 consensus Calreticulin [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.4e-130 Score=946.55 Aligned_cols=352 Identities=54% Similarity=1.055 Sum_probs=339.6
Q ss_pred HHHHHHhhccceeeeeeccCC--CccCCCeEecccccCCCCCCcEEEeccccCCCCC-CcceeeccccchhhhhccCCCC
Q 017253 6 LVLFLFFQISVSEIFFEERFD--DGWRSRWVISDWKRSEGKAGYFKHTAGKWHGDPD-DKGIQTHTDARHYAISAKIPEF 82 (374)
Q Consensus 6 ~~~~~~~~~~~~~v~F~E~F~--~~~~~rWv~S~~~k~~~~~G~~~~~~g~~~~~~~-d~GL~~~~~ak~yaIs~~l~~~ 82 (374)
+.+|++++++++.|||.|.|. ++|+.|||+|++++. ..|.|.+++|+|+++++ |+||+|++++||||||++|+.|
T Consensus 8 ~~ll~~v~~~sa~Vyf~E~F~d~~~w~~rwv~skhk~~--~fG~f~ls~g~f~g~~~~DkGiqTsqd~rfya~sa~F~~F 85 (406)
T KOG0674|consen 8 LCLLALVALASAEVYFKEEFLDEDGWENRWVQSKHKSR--DFGKFVLSAGKFYGDEEKDKGIQTSQDARFYAISAKFKPF 85 (406)
T ss_pred HHHHHHHHHHhhhhhhhhhhcCCCCceEEEEEeecccc--ccCceEeccccccCcccccccccccccceeeeeecccccc
Confidence 444445677788999999995 459999999999754 46999999999999987 9999999999999999999999
Q ss_pred CCCCCceEEEEEEeeeceeeccCceEEeccccccccccCCCCCeeEEEcccccCCCCceEEEEEeecCCccccccCCccc
Q 017253 83 SNKNRTLVVQYSIRFEQDIECGGGYIKLLSAYVNQKKFGGDAPYSLMFGPDICGTQKKHLHVILSYQGQNYPIKKELECE 162 (374)
Q Consensus 83 ~~~~k~LVvQYeVk~q~~i~CGGaYiKLl~~~~d~~~f~~~tpY~IMFGPD~CG~~~~kvH~I~~~~~~~~~~~~~~~~~ 162 (374)
+|++|+|||||+|||+|.|+|||||||||+++.||.+|+++|||.||||||+||++|+|||+||+|+++||++++.++|+
T Consensus 86 snK~kTLv~q~tVkheQ~~dcgggyiKl~~~d~Dq~~f~ges~y~iMfGPDICG~~tkKVhvil~ykg~nhlikK~i~Ck 165 (406)
T KOG0674|consen 86 SNKGKTLVIQFTVKHEQKIDCGGGYIKLFPADLDQTDFHGESPYNIMFGPDICGFGTKKVHVILNYKGKNHLIKKDIRCK 165 (406)
T ss_pred cccCceEEEEEEecccccccCCceeEEeeecccchhhcCCCcccccccCCcccCCCCceEEEEEecccccchhccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCccceEEEEEcCCCceEEEEcCeeeccCCccCCCCCCCCccccCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCC
Q 017253 163 TDKLTHFYTFILRPDASYSILIDNRERDSGSMYTDWDILPPRKIKAVNAKKPADWDDREYIDDPNAVKPEGYDSIPKEIP 242 (374)
Q Consensus 163 ~D~~tHlYTLii~pdntyei~IDg~~~~~gsl~~dw~~~~p~~I~Dp~d~KP~DW~d~~~I~Dp~~~KP~dWDd~p~~Ip 242 (374)
+|++|||||||||||+||+|+|||+.+.+|||.+||+++||+.|.||.++||+||+++++|+||+++||++|+ .|++||
T Consensus 166 ~D~~tHlYTlIlRPd~TYeVkIDn~~~esGsle~DWdll~~KKikdP~a~KPedWDer~~I~DpeD~Kp~dwe-~pehip 244 (406)
T KOG0674|consen 166 DDELTHLYTLILRPDATYEVKIDNQQVESGSLEDDWDLLPPKKIKDPDAKKPEDWDEREYIPDPEDKKPQDWE-KPEHIP 244 (406)
T ss_pred cCCcceeEEEEecCCCeeEEEEcccccccCccccccccccccccCCccccCcccchhhccCCCccccCccccc-cccccC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999 699999
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCccCcCCCCCCCcccccCccCCCCCCCCCCCCCcCCceeEeEEEEeecC
Q 017253 243 DPKAKKPDNWDEDEDGLWKPPKIPNPAYKGPWRPKRIKNPNYKGKWKIPYIDNPEFEDDPDLYVLKPIKYVGIEVWQVKA 322 (374)
Q Consensus 243 DP~a~kP~dWd~~~dG~We~p~I~NP~ykG~W~p~~I~NP~ykG~W~~~~I~NP~Y~~d~~~~~~~~i~~vG~elW~~~~ 322 (374)
||+|+||+|||+++||+|+||||+||.|+|+|+|++|.||+|||.|.+|+|.||.|..++.++.+.+|++||||||||+|
T Consensus 245 DpdakKpedWddemDGEWe~P~i~nPey~gewkPkqi~np~yKg~w~hp~i~npey~~d~~ly~~~ni~~lgldLWQVKS 324 (406)
T KOG0674|consen 245 DPDAKKPEDWDDEMDGEWEAPMIPNPEYKGEWKPKQIKNPAYKGKWIHPEIDNPEYPDDPELYHYENIGVLGLDLWQVKS 324 (406)
T ss_pred CcccCCcccccccccCCcCCCCCCCccccCccCcccccCccccceeeccccCCCcCCCCcceeeecccceeeeeEEEeec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceeceEEecCCHHHHHHHHHHhhcc-hhHHHhhhHHHH
Q 017253 323 GSVYDNILICDDPAYAKQVVEEVLSN-REIEKEGFEEAE 360 (374)
Q Consensus 323 g~~FDNili~~d~~~A~~~~~~t~~~-~~~E~~~~~~~~ 360 (374)
|+||||||||+|+++|++++++||+. +.+|+++++++.
T Consensus 325 gtIFDN~LitdD~eyA~k~~~eTwg~~k~~ek~~~~~~~ 363 (406)
T KOG0674|consen 325 GTIFDNFLITDDEEYAEKFANETWGKTKDAEKEMKDKAD 363 (406)
T ss_pred ceeecceEecCCHHHHHHHHHhhhcccccHHHHhhhhhh
Confidence 99999999999999999999999998 999999987654
No 2
>PF00262 Calreticulin: Calreticulin family; InterPro: IPR001580 Synonym(s): Calregulin, CRP55, HACBP Calreticulin [] is a high-capacity calcium-binding protein which is present in most tissues and located at the periphery of the endoplasmic (ER) and the sarcoplamic reticulum (SR) membranes. It probably plays a role in the storage of calcium in the lumen of the ER and SR and it may well have other important functions. Structurally, calreticulin is a protein of about 400 amino acid residues consisting of three domains: An N-terminal, probably globular, domain of about 180 amino acid residues (N-domain). A central domain of about 70 residues (P-domain) which contains three repeats of an acidic 17 amino acid motif. This region binds calcium with a low-capacity, but a high-affinity. A C-terminal domain rich in acidic residues and in lysine (C-domain). This region binds calcium with a high-capacity but a low-affinity. Calreticulin is evolutionarily related to several other calcium-binding proteins, including Onchocerca volvulus antigen RAL-1, calnexin [] and calmegin [].; GO: 0005509 calcium ion binding; PDB: 3POS_C 3DOW_B 3POW_A 1HHN_A 1K9C_A 1K91_A 3O0X_B 3O0W_A 3RG0_A 3O0V_A ....
Probab=100.00 E-value=8.2e-123 Score=919.11 Aligned_cols=312 Identities=53% Similarity=1.022 Sum_probs=236.1
Q ss_pred eeeeccCCCc--cCCCeEecccccCC---CCCCcEEEeccccC-CCCCCcceeeccccchhhhhccCCC-CCCCCCceEE
Q 017253 19 IFFEERFDDG--WRSRWVISDWKRSE---GKAGYFKHTAGKWH-GDPDDKGIQTHTDARHYAISAKIPE-FSNKNRTLVV 91 (374)
Q Consensus 19 v~F~E~F~~~--~~~rWv~S~~~k~~---~~~G~~~~~~g~~~-~~~~d~GL~~~~~ak~yaIs~~l~~-~~~~~k~LVv 91 (374)
|||+|+|+++ |.+|||+|++++++ .|.|+|++++|+++ +.++|+||||+++|||||||++|++ |++++|+|||
T Consensus 1 v~F~E~F~~~~~~~~rWv~S~~~k~~~~~~y~G~W~~~~~~~~~~~~~DkGLv~~~~ak~yaIS~kl~kPf~~~~k~LVv 80 (367)
T PF00262_consen 1 VYFFETFDDGDDWKSRWVQSEAKKDDEIAKYDGKWELEAGKWYPGFEGDKGLVTKSDAKHYAISAKLDKPFSNKDKDLVV 80 (367)
T ss_dssp EEEEE---SGGGGGGTEEE--SSST--------EEEEEB-SSTSSTTTTBEEEEESSSEEEEEEEEEEEEE-STTS-EEE
T ss_pred CeEeEecCCCCcccCceeeCCCcCcCccccCceEEEEecccccCCCcCceeeEeccchhhhhhhhhCCCccccCCCcEEE
Confidence 7999999986 99999999999874 67899999999766 4567999999999999999999998 9999999999
Q ss_pred EEEEeeeceeeccCceEEecccccccc-ccCCCCCeeEEEcccccCCCCceEEEEEeecCC-------ccccccCCcccc
Q 017253 92 QYSIRFEQDIECGGGYIKLLSAYVNQK-KFGGDAPYSLMFGPDICGTQKKHLHVILSYQGQ-------NYPIKKELECET 163 (374)
Q Consensus 92 QYeVk~q~~i~CGGaYiKLl~~~~d~~-~f~~~tpY~IMFGPD~CG~~~~kvH~I~~~~~~-------~~~~~~~~~~~~ 163 (374)
|||||||++|+|||||||||+++.++. +|+++|||+||||||+|| .+++|||||||++. +|..+++..+.+
T Consensus 81 QYeVK~q~~idCGGaYIKLL~~~~~~~~~f~~~TpY~IMFGPD~CG-~~~kvHfI~~~~nP~~~~~~e~~l~~~p~~~~~ 159 (367)
T PF00262_consen 81 QYEVKFQQGIDCGGAYIKLLPASFDQEENFSDKTPYSIMFGPDKCG-SSNKVHFIFRHKNPITGEIEEKHLKKPPISCFT 159 (367)
T ss_dssp EEEEEETT--SEEE--EEEEBTTSSGGGG-STTS-ESEEEEEEEES-TTEEEEEEEEEE-TTTEETTEEEE-SSSSB-HH
T ss_pred EEEEEeecceeccceEEEEecCccchhhhcCCCCCceEEeCCccCC-CCceEEEEEEecCCCCCcccceecccCCccccc
Confidence 999999999999999999999998887 999999999999999999 67779999988652 345566667889
Q ss_pred CCccceEEEEEcCCCceEEEEcCeeeccCCccCCCC--CCCCccccCCCCCCCCCCCCCCccCCCCCCCCCCCC------
Q 017253 164 DKLTHFYTFILRPDASYSILIDNRERDSGSMYTDWD--ILPPRKIKAVNAKKPADWDDREYIDDPNAVKPEGYD------ 235 (374)
Q Consensus 164 D~~tHlYTLii~pdntyei~IDg~~~~~gsl~~dw~--~~~p~~I~Dp~d~KP~DW~d~~~I~Dp~~~KP~dWD------ 235 (374)
|++||||||||+|||||||+|||+++.+|||.+||+ ++||++|+||+|+||+||||+++|+||+|+||+|||
T Consensus 160 D~~tHlYTLii~~dntyeI~IDg~~~~~G~L~~df~Pp~~ppk~I~Dp~d~KP~DW~d~~~I~Dp~~~KPedWdE~~p~~ 239 (367)
T PF00262_consen 160 DKLTHLYTLIIRPDNTYEIRIDGEVVKSGSLLEDFDPPFNPPKEIDDPNDKKPEDWDDREKIPDPNAKKPEDWDEDEPEF 239 (367)
T ss_dssp SSSEEEEEEEEETTTEEEEEETTEEEEEEEHHHHSE--ESS-SCEE-TTT--TTT-TTTSEEC-SSTT--TTTSSS--SE
T ss_pred CCCcceEEEEEcCCCeEEEEECCEEeeccccccccccCcCChhcccCccccCCcchhhhcccCCccccCcccccccCccc
Confidence 999999999999999999999999999999999999 999999999999999999999999999999999999
Q ss_pred --------------CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC------------------CCCccCccCcCCCCC
Q 017253 236 --------------SIPKEIPDPKAKKPDNWDEDEDGLWKPPKIPNP------------------AYKGPWRPKRIKNPN 283 (374)
Q Consensus 236 --------------d~p~~IpDP~a~kP~dWd~~~dG~We~p~I~NP------------------~ykG~W~p~~I~NP~ 283 (374)
++|++||||+|+||+|||+++||+|+||||+|| +|||+|+||||+||+
T Consensus 240 I~D~~a~kP~~W~edep~~IpDp~a~kP~dWdde~dGeWe~P~I~NP~C~~~gCG~w~~p~i~Np~YkG~W~pp~I~NP~ 319 (367)
T PF00262_consen 240 IPDPDAVKPEGWLEDEPEYIPDPEAKKPEDWDDEEDGEWEAPMIPNPKCKEPGCGEWKPPMIKNPNYKGKWKPPMIPNPN 319 (367)
T ss_dssp EE-TT----SS-BSSS-SEEE-TT--S-TT--CCCCSS----EEE-CGGTTS-BSS----EEE-TT--SS----EEE-TT
T ss_pred ccCccccCCcchhhCCCcccCCCCCCCCCCCCccccCCccCCccCCCcccCCCccccccccccCccccCCccccccCCcc
Confidence 579999999999999999999999999999999 999999999999999
Q ss_pred CCcccccCccCCCCCCCCCCCCCcCCceeEeEEEEeecCCceeceEEe
Q 017253 284 YKGKWKIPYIDNPEFEDDPDLYVLKPIKYVGIEVWQVKAGSVYDNILI 331 (374)
Q Consensus 284 ykG~W~~~~I~NP~Y~~d~~~~~~~~i~~vG~elW~~~~g~~FDNili 331 (374)
|+|+|+||+|+||+|++|.+++.+.+|++||||||||++|++||||||
T Consensus 320 YkG~W~p~~I~NP~y~~d~~p~~~~~i~~ig~ElW~~~~~~~FDNi~i 367 (367)
T PF00262_consen 320 YKGEWKPRKIPNPDYFEDPNPYNFEPIGAIGFELWQMSSGIIFDNILI 367 (367)
T ss_dssp ---S----EEE-TT--SSTTTT--S-EEEEEEEEEESSS-EEEEEEEE
T ss_pred ccccccccccCCCcccCCCCccccCceeEEEEEEEeccCCceeeeEEC
Confidence 999999999999999999999999999999999999999999999998
No 3
>KOG0675 consensus Calnexin [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.6e-113 Score=865.70 Aligned_cols=333 Identities=41% Similarity=0.785 Sum_probs=307.1
Q ss_pred eeccCCCc--cCCCeEecccccCC------CCCCcEEEeccccCCCCCCcceeeccccchhhhhccCCC-CCCCCCceEE
Q 017253 21 FEERFDDG--WRSRWVISDWKRSE------GKAGYFKHTAGKWHGDPDDKGIQTHTDARHYAISAKIPE-FSNKNRTLVV 91 (374)
Q Consensus 21 F~E~F~~~--~~~rWv~S~~~k~~------~~~G~~~~~~g~~~~~~~d~GL~~~~~ak~yaIs~~l~~-~~~~~k~LVv 91 (374)
|.|+|+.+ |. |||.|.++|++ .|.|.|.++.++-.+.++|+||++++.|||||||+.|++ |+++.++|||
T Consensus 43 f~d~Fd~~~~~~-rWi~S~akk~d~~~ei~kY~G~W~~ee~~~~~~~~D~GLvvkskakhhaI~a~L~~P~~~~~~plVV 121 (558)
T KOG0675|consen 43 FADHFDGGTAST-RWILSWAKKDDIDDEIAKYDGVWDLEEPPKSHLAGDYGLVVKSKAKHHAISAELEEPFNFKEKPLVV 121 (558)
T ss_pred chhcccccccce-eeeeeecccccccchhhhccceeeeccCccccCCcccceEeeccchhhHHHhhhcCCcccCCCCeEE
Confidence 77778875 45 89999998874 368999999988777889999999999999999999998 9999999999
Q ss_pred EEEEeeeceeeccCceEEecccc---ccccccCCCCCeeEEEcccccCCCCceEEEEEeecC------CccccccCCc--
Q 017253 92 QYSIRFEQDIECGGGYIKLLSAY---VNQKKFGGDAPYSLMFGPDICGTQKKHLHVILSYQG------QNYPIKKELE-- 160 (374)
Q Consensus 92 QYeVk~q~~i~CGGaYiKLl~~~---~d~~~f~~~tpY~IMFGPD~CG~~~~kvH~I~~~~~------~~~~~~~~~~-- 160 (374)
|||||+|+|++|||||||||++. ..+++|+++|||+||||||+|| .+++|||||||++ .+++.+.++.
T Consensus 122 QYEvk~qeg~eCGGAYlKLLs~~~~~~~l~~f~dktpy~ImFGPDKCG-~~~kvhFIf~hknp~tG~~~ekh~~~pp~~l 200 (558)
T KOG0675|consen 122 QYEVKFQEGLECGGAYLKLLSQGTAGENLKNFDDKTPYTIMFGPDKCG-ETNKVHFIFRHKNPITGEISEKHLKAPPSSL 200 (558)
T ss_pred EEEEecCCCcccchhHHHhhcccccccchhccCCCCCeEEEeCccccC-CcccEEEEEeeccCCCCeeehhhccCCCccc
Confidence 99999999999999999999983 4789999999999999999999 9999999999975 2466666664
Q ss_pred --cccCCccceEEEEEcCCCceEEEEcCeeeccCCccCCCC--CCCCccccCCCCCCCCCCCCCCccCCCCCCCCCCCCC
Q 017253 161 --CETDKLTHFYTFILRPDASYSILIDNRERDSGSMYTDWD--ILPPRKIKAVNAKKPADWDDREYIDDPNAVKPEGYDS 236 (374)
Q Consensus 161 --~~~D~~tHlYTLii~pdntyei~IDg~~~~~gsl~~dw~--~~~p~~I~Dp~d~KP~DW~d~~~I~Dp~~~KP~dWDd 236 (374)
..+|++||||||||+|||||+|||||++|+.|+|++||. ++||++|+||+|.||+|||+|++||||+|+||+|||+
T Consensus 201 ~~~~~d~~tHLYTLvl~pd~sfeI~vDg~vv~~G~ll~Df~Ppv~Pp~eI~Dp~d~KP~dWDer~kIpDpnAvKPdDWDE 280 (558)
T KOG0675|consen 201 KKPFDDKLTHLYTLVLKPDNTFEIRVDGKVVYKGSLLTDFEPPVTPPKEIPDPSDKKPEDWDERAKIPDPNAVKPDDWDE 280 (558)
T ss_pred ccccccCCceeEEEEecCCCeEEEEecCcEEEecccccccCCCCCCccccCCcccCCccchhhhhcCCCcccCCccccCc
Confidence 678999999999999999999999999999999999995 8999999999999999999999999999999999995
Q ss_pred --------------------CCCCCCCCCCCCCCCCCCCCCCCCCC-------------------CCCCCCCCCccCccC
Q 017253 237 --------------------IPKEIPDPKAKKPDNWDEDEDGLWKP-------------------PKIPNPAYKGPWRPK 277 (374)
Q Consensus 237 --------------------~p~~IpDP~a~kP~dWd~~~dG~We~-------------------p~I~NP~ykG~W~p~ 277 (374)
+|.+|+||+|+||+|||+++||+|+| |||+||+|||+|.+|
T Consensus 281 ~~P~~Ipd~davkP~~Wledep~~I~DP~A~KPedWdee~dGeWeap~I~NP~C~~~~GCG~wk~p~I~NP~YKGkw~~p 360 (558)
T KOG0675|consen 281 DAPLSIPDEDAVKPEGWLEDEPEYIPDPEAQKPEDWDEEEDGEWEAPMIINPKCKEASGCGEWKPPMINNPNYKGKWILP 360 (558)
T ss_pred CCCccCCCccccCCccccccCCcccCCcccCCCCCCCccccCccccccccCchhhcCCCCCcccCcccCCCccCCCCccc
Confidence 58999999999999999999988766 466778899999999
Q ss_pred cCCCCCCCcccccCccCCCCCCCCCCCCCcCCceeEeEEEEeecCCceeceEEecCCHHHHHHHHHHhhcc-hhHHHhh
Q 017253 278 RIKNPNYKGKWKIPYIDNPEFEDDPDLYVLKPIKYVGIEVWQVKAGSVYDNILICDDPAYAKQVVEEVLSN-REIEKEG 355 (374)
Q Consensus 278 ~I~NP~ykG~W~~~~I~NP~Y~~d~~~~~~~~i~~vG~elW~~~~g~~FDNili~~d~~~A~~~~~~t~~~-~~~E~~~ 355 (374)
||+||+|+|+|+||+|+||+||++.+|+.+.+|.+||+|||+|+++++|||||||+|++.|+.+++.||.. ..+|++.
T Consensus 361 mI~NP~y~G~W~PRkI~NPdyfEd~~p~~~~pIsavglElWsMs~~IlfdNi~i~~~~e~a~~~~~~tw~~K~~~~~e~ 439 (558)
T KOG0675|consen 361 MIDNPNYQGIWKPRKIPNPDYFEDDKPFTLTPISAVGLELWSMSSNILFDNIIITKDIEVAEDIANFTWLLKAAAEREK 439 (558)
T ss_pred cccCccccCccccccCCCcccccccCcccccchhhhhhhhhhcCCCceeceeEEeccHHHHHHhhhhceeeehhhcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999 5555544
No 4
>PF00262 Calreticulin: Calreticulin family; InterPro: IPR001580 Synonym(s): Calregulin, CRP55, HACBP Calreticulin [] is a high-capacity calcium-binding protein which is present in most tissues and located at the periphery of the endoplasmic (ER) and the sarcoplamic reticulum (SR) membranes. It probably plays a role in the storage of calcium in the lumen of the ER and SR and it may well have other important functions. Structurally, calreticulin is a protein of about 400 amino acid residues consisting of three domains: An N-terminal, probably globular, domain of about 180 amino acid residues (N-domain). A central domain of about 70 residues (P-domain) which contains three repeats of an acidic 17 amino acid motif. This region binds calcium with a low-capacity, but a high-affinity. A C-terminal domain rich in acidic residues and in lysine (C-domain). This region binds calcium with a high-capacity but a low-affinity. Calreticulin is evolutionarily related to several other calcium-binding proteins, including Onchocerca volvulus antigen RAL-1, calnexin [] and calmegin [].; GO: 0005509 calcium ion binding; PDB: 3POS_C 3DOW_B 3POW_A 1HHN_A 1K9C_A 1K91_A 3O0X_B 3O0W_A 3RG0_A 3O0V_A ....
Probab=99.88 E-value=6.5e-24 Score=212.13 Aligned_cols=100 Identities=43% Similarity=0.806 Sum_probs=48.9
Q ss_pred cCCccCCCCCCCCccccCCCCCCCCCCCC--CCccCCCCCCCCCCCCC------CCCCCCCCCCCCC--------CCCCC
Q 017253 191 SGSMYTDWDILPPRKIKAVNAKKPADWDD--REYIDDPNAVKPEGYDS------IPKEIPDPKAKKP--------DNWDE 254 (374)
Q Consensus 191 ~gsl~~dw~~~~p~~I~Dp~d~KP~DW~d--~~~I~Dp~~~KP~dWDd------~p~~IpDP~a~kP--------~dWd~ 254 (374)
+..+++||+...|++|+||++.||++|++ +++|+||+|+||+|||+ ++++|+||.|..+ ..=|.
T Consensus 225 ~~~KPedWdE~~p~~I~D~~a~kP~~W~edep~~IpDp~a~kP~dWdde~dGeWe~P~I~NP~C~~~gCG~w~~p~i~Np 304 (367)
T PF00262_consen 225 NAKKPEDWDEDEPEFIPDPDAVKPEGWLEDEPEYIPDPEAKKPEDWDDEEDGEWEAPMIPNPKCKEPGCGEWKPPMIKNP 304 (367)
T ss_dssp STT--TTTSSS--SEEE-TT----SS-BSSS-SEEE-TT--S-TT--CCCCSS----EEE-CGGTTS-BSS----EEE-T
T ss_pred cccCcccccccCcccccCccccCCcchhhCCCcccCCCCCCCCCCCCccccCCccCCccCCCcccCCCccccccccccCc
Confidence 34577777777777777777777777776 48999999999999997 5899999988763 33367
Q ss_pred CCCCCCCCCCCCCCCCCccCccCcCCCCCCCccccc
Q 017253 255 DEDGLWKPPKIPNPAYKGPWRPKRIKNPNYKGKWKI 290 (374)
Q Consensus 255 ~~dG~We~p~I~NP~ykG~W~p~~I~NP~ykG~W~~ 290 (374)
.+.|+|+||||+||+|+|+|+||+|+||+|..+=.+
T Consensus 305 ~YkG~W~pp~I~NP~YkG~W~p~~I~NP~y~~d~~p 340 (367)
T PF00262_consen 305 NYKGKWKPPMIPNPNYKGEWKPRKIPNPDYFEDPNP 340 (367)
T ss_dssp T--SS----EEE-TT---S----EEE-TT--SSTTT
T ss_pred cccCCccccccCCccccccccccccCCCcccCCCCc
Confidence 899999999999999999999999999999988433
No 5
>KOG0675 consensus Calnexin [Posttranslational modification, protein turnover, chaperones]
Probab=99.83 E-value=7e-21 Score=194.71 Aligned_cols=109 Identities=37% Similarity=0.674 Sum_probs=96.3
Q ss_pred ccCCccCCCCCCCCccccCCCCCCCCCCCCC--CccCCCCCCCCCCCCC------CCCCCCCCCCCC---------CCCC
Q 017253 190 DSGSMYTDWDILPPRKIKAVNAKKPADWDDR--EYIDDPNAVKPEGYDS------IPKEIPDPKAKK---------PDNW 252 (374)
Q Consensus 190 ~~gsl~~dw~~~~p~~I~Dp~d~KP~DW~d~--~~I~Dp~~~KP~dWDd------~p~~IpDP~a~k---------P~dW 252 (374)
.+..+++|||...|.+|+|+.+.||++|.+. ++|+||+|+||+|||+ ++++|-||.|++ |..-
T Consensus 270 pnAvKPdDWDE~~P~~Ipd~davkP~~Wledep~~I~DP~A~KPedWdee~dGeWeap~I~NP~C~~~~GCG~wk~p~I~ 349 (558)
T KOG0675|consen 270 PNAVKPDDWDEDAPLSIPDEDAVKPEGWLEDEPEYIPDPEAQKPEDWDEEEDGEWEAPMIINPKCKEASGCGEWKPPMIN 349 (558)
T ss_pred cccCCccccCcCCCccCCCccccCCccccccCCcccCCcccCCCCCCCccccCccccccccCchhhcCCCCCcccCcccC
Confidence 3466899999999999999999999999985 6999999999999997 588999998873 4556
Q ss_pred CCCCCCCCCCCCCCCCCCCccCccCcCCCCCCCcccccCccCCCCCC
Q 017253 253 DEDEDGLWKPPKIPNPAYKGPWRPKRIKNPNYKGKWKIPYIDNPEFE 299 (374)
Q Consensus 253 d~~~dG~We~p~I~NP~ykG~W~p~~I~NP~ykG~W~~~~I~NP~Y~ 299 (374)
|..+.|.|.+|||.||+|+|.|+||.|+||+|... .+|-+-+|-|-
T Consensus 350 NP~YKGkw~~pmI~NP~y~G~W~PRkI~NPdyfEd-~~p~~~~pIsa 395 (558)
T KOG0675|consen 350 NPNYKGKWILPMIDNPNYQGIWKPRKIPNPDYFED-DKPFTLTPISA 395 (558)
T ss_pred CCccCCCCccccccCccccCccccccCCCcccccc-cCcccccchhh
Confidence 88899999999999999999999999999999998 44557778774
No 6
>KOG0674 consensus Calreticulin [Posttranslational modification, protein turnover, chaperones]
Probab=99.82 E-value=1.3e-20 Score=184.24 Aligned_cols=220 Identities=27% Similarity=0.448 Sum_probs=134.5
Q ss_pred cEEEeccccCCCCC-Ccceeecc---------ccchhh--hhccCCCCCCCCCceEEEEEEeeeceeeccCceEEecccc
Q 017253 47 YFKHTAGKWHGDPD-DKGIQTHT---------DARHYA--ISAKIPEFSNKNRTLVVQYSIRFEQDIECGGGYIKLLSAY 114 (374)
Q Consensus 47 ~~~~~~g~~~~~~~-d~GL~~~~---------~ak~ya--Is~~l~~~~~~~k~LVvQYeVk~q~~i~CGGaYiKLl~~~ 114 (374)
+|-.-++.|..+.+ ++-||.-= .+..|. .++.++.+.+.|+ -+|.+-|- .=-||=|-=|+---
T Consensus 74 rfya~sa~F~~FsnK~kTLv~q~tVkheQ~~dcgggyiKl~~~d~Dq~~f~ge---s~y~iMfG-PDICG~~tkKVhvi- 148 (406)
T KOG0674|consen 74 RFYAISAKFKPFSNKGKTLVIQFTVKHEQKIDCGGGYIKLFPADLDQTDFHGE---SPYNIMFG-PDICGFGTKKVHVI- 148 (406)
T ss_pred eeeeeecccccccccCceEEEEEEecccccccCCceeEEeeecccchhhcCCC---cccccccC-CcccCCCCceEEEE-
Confidence 44444455555443 66676421 122333 4555666555555 46777664 33487654443211
Q ss_pred ccccccCCCCCeeEEEcccccCCC--CceEEEEEeecCCccccccC-CccccCCccceEEEEEcCCCceEEEEcCeeecc
Q 017253 115 VNQKKFGGDAPYSLMFGPDICGTQ--KKHLHVILSYQGQNYPIKKE-LECETDKLTHFYTFILRPDASYSILIDNRERDS 191 (374)
Q Consensus 115 ~d~~~f~~~tpY~IMFGPD~CG~~--~~kvH~I~~~~~~~~~~~~~-~~~~~D~~tHlYTLii~pdntyei~IDg~~~~~ 191 (374)
.+|.++ +.+.=-==.|-.+ |+-..||+|-.+ .|.++-. ....+..+..-+.|.-... .....
T Consensus 149 ---l~ykg~--nhlikK~i~Ck~D~~tHlYTlIlRPd~-TYeVkIDn~~~esGsle~DWdll~~KK---------ikdP~ 213 (406)
T KOG0674|consen 149 ---LNYKGK--NHLIKKDIRCKDDELTHLYTLILRPDA-TYEVKIDNQQVESGSLEDDWDLLPPKK---------IKDPD 213 (406)
T ss_pred ---Eecccc--cchhccccccccCCcceeEEEEecCCC-eeEEEEcccccccCccccccccccccc---------cCCcc
Confidence 112111 1111111134312 445555665432 2233221 1223333333333332110 12345
Q ss_pred CCccCCCCCCCCccccCCCCCCCCCCCCCCccCCCCCCCCCCCCC------CCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 017253 192 GSMYTDWDILPPRKIKAVNAKKPADWDDREYIDDPNAVKPEGYDS------IPKEIPDPKAKKPDNWDEDEDGLWKPPKI 265 (374)
Q Consensus 192 gsl~~dw~~~~p~~I~Dp~d~KP~DW~d~~~I~Dp~~~KP~dWDd------~p~~IpDP~a~kP~dWd~~~dG~We~p~I 265 (374)
.++++||+. ...|+||+|+||+||+-+++||||+++||+|||+ +++|||+|+++ |+|+|..|
T Consensus 214 a~KPedWDe--r~~I~DpeD~Kp~dwe~pehipDpdakKpedWddemDGEWe~P~i~nPey~----------gewkPkqi 281 (406)
T KOG0674|consen 214 AKKPEDWDE--REYIPDPEDKKPQDWEKPEHIPDPDAKKPEDWDDEMDGEWEAPMIPNPEYK----------GEWKPKQI 281 (406)
T ss_pred ccCcccchh--hccCCCccccCccccccccccCCcccCCcccccccccCCcCCCCCCCcccc----------CccCcccc
Confidence 679999997 6799999999999999999999999999999997 58999999998 99999999
Q ss_pred CCCCCCccCccCcCCCCCCCcccccCccCCCCC
Q 017253 266 PNPAYKGPWRPKRIKNPNYKGKWKIPYIDNPEF 298 (374)
Q Consensus 266 ~NP~ykG~W~p~~I~NP~ykG~W~~~~I~NP~Y 298 (374)
.||+|||.|.+|+|.||.|...-.--...|=.+
T Consensus 282 ~np~yKg~w~hp~i~npey~~d~~ly~~~ni~~ 314 (406)
T KOG0674|consen 282 KNPAYKGKWIHPEIDNPEYPDDPELYHYENIGV 314 (406)
T ss_pred cCccccceeeccccCCCcCCCCcceeeecccce
Confidence 999999999999999999987644333334333
No 7
>PF06439 DUF1080: Domain of Unknown Function (DUF1080); InterPro: IPR010496 This is a family of proteins of unknown function.; PDB: 3IMM_B 3NMB_A 3S5Q_A 3OSD_A 3HBK_A 3H3L_A 3U1X_A.
Probab=68.11 E-value=39 Score=29.63 Aligned_cols=139 Identities=10% Similarity=0.066 Sum_probs=65.1
Q ss_pred cCCCccCCCeEecccccCCCCCCcEEEeccccC---CCCCCcceeeccccchhhhhccCCCCCCCCCceEEEEEEeeece
Q 017253 24 RFDDGWRSRWVISDWKRSEGKAGYFKHTAGKWH---GDPDDKGIQTHTDARHYAISAKIPEFSNKNRTLVVQYSIRFEQD 100 (374)
Q Consensus 24 ~F~~~~~~rWv~S~~~k~~~~~G~~~~~~g~~~---~~~~d~GL~~~~~ak~yaIs~~l~~~~~~~k~LVvQYeVk~q~~ 100 (374)
=|+..-.+.|...... ...+.|.+..|.+. ......|+++++ + .=++++|+.++|+..+
T Consensus 5 lf~g~~l~gW~~~~~~---~~~~~~~v~dG~l~~~~~~~~~~~~l~~~------------~---~~~df~l~~d~k~~~~ 66 (185)
T PF06439_consen 5 LFNGKDLDGWKIYGGG---WFEGGWSVKDGVLVSNGSSGSGGGYLYTD------------K---KFSDFELEVDFKITPG 66 (185)
T ss_dssp SS-SSCGTTEEETTSS---SETTTEEEETTEEE-GGGGESSS--EEES------------S---EBSSEEEEEEEEE-TT
T ss_pred eECCCCHHHCeeCCCC---ccccCcEeeCCEEEecccCCCCcceEEEC------------C---ccccEEEEEEEEECCC
Confidence 4665556889888532 22477888888654 111222333221 1 1256899999998322
Q ss_pred eeccCceEEeccccccccccCCCCCeeEEEcccccCCCCceEEEEEee-cCCcc-----cccc-CCccccCCccceEEEE
Q 017253 101 IECGGGYIKLLSAYVNQKKFGGDAPYSLMFGPDICGTQKKHLHVILSY-QGQNY-----PIKK-ELECETDKLTHFYTFI 173 (374)
Q Consensus 101 i~CGGaYiKLl~~~~d~~~f~~~tpY~IMFGPD~CG~~~~kvH~I~~~-~~~~~-----~~~~-~~~~~~D~~tHlYTLi 173 (374)
- .+|=|+..- . .........-|++-..++.++. ...+ .+..+ .... .........-|=++++
T Consensus 67 ~-~sGi~~r~~--~-~~~~~~~~~gy~~~i~~~~~~~-------~~~~~~G~~~~~~~~~~~~~~~~~~~~~~W~~~~I~ 135 (185)
T PF06439_consen 67 G-NSGIFFRAQ--S-PGDGQDWNNGYEFQIDNSGGGT-------GLPNSTGSLYDEPPWQLEPSVNVAIPPGEWNTVRIV 135 (185)
T ss_dssp --EEEEEEEES--S-ECCSSGGGTSEEEEEE-TTTCS-------TTTTSTTSBTTTB-TCB-SSS--S--TTSEEEEEEE
T ss_pred C-CeEEEEEec--c-ccCCCCcceEEEEEEECCCCcc-------CCCCccceEEEeccccccccccccCCCCceEEEEEE
Confidence 1 334444332 1 0111112234777777777640 0001 11111 0011 1112222344445555
Q ss_pred EcCCCceEEEEcCeeeccC
Q 017253 174 LRPDASYSILIDNRERDSG 192 (374)
Q Consensus 174 i~pdntyei~IDg~~~~~g 192 (374)
++ .+++.+.|||+.|..-
T Consensus 136 ~~-g~~i~v~vnG~~v~~~ 153 (185)
T PF06439_consen 136 VK-GNRITVWVNGKPVADF 153 (185)
T ss_dssp EE-TTEEEEEETTEEEEEE
T ss_pred EE-CCEEEEEECCEEEEEE
Confidence 54 7789999999987653
No 8
>PLN03161 Probable xyloglucan endotransglucosylase/hydrolase protein; Provisional
Probab=52.67 E-value=1.9e+02 Score=29.17 Aligned_cols=26 Identities=19% Similarity=0.171 Sum_probs=21.2
Q ss_pred CccceEEEEEcCCCceEEEEcCeeecc
Q 017253 165 KLTHFYTFILRPDASYSILIDNRERDS 191 (374)
Q Consensus 165 ~~tHlYTLii~pdntyei~IDg~~~~~ 191 (374)
.--|.|++.=.|+ ....+|||+++..
T Consensus 141 ~dFHtYsI~Wtp~-~I~wyVDG~~iRt 166 (291)
T PLN03161 141 ADFHNYTIHWNPS-EVVWYVDGTPIRV 166 (291)
T ss_pred cCcEEEEEEEchh-hEEEEECCEEEEE
Confidence 4569999999876 5688999999873
No 9
>PF07210 DUF1416: Protein of unknown function (DUF1416); InterPro: IPR010814 This family consists of several hypothetical bacterial proteins of around 100 residues in length. Members of this family appear to be Actinomycete specific. The function of this family is unknown.
Probab=42.49 E-value=32 Score=28.80 Aligned_cols=29 Identities=21% Similarity=0.448 Sum_probs=25.2
Q ss_pred CCCceEEEEEEeeeceeeccCceEEecccc
Q 017253 85 KNRTLVVQYSIRFEQDIECGGGYIKLLSAY 114 (374)
Q Consensus 85 ~~k~LVvQYeVk~q~~i~CGGaYiKLl~~~ 114 (374)
-.|..|||=.|+ ..+--.||||+.||..+
T Consensus 4 ~~ke~VItG~V~-~~G~Pv~gAyVRLLD~s 32 (85)
T PF07210_consen 4 VEKETVITGRVT-RDGEPVGGAYVRLLDSS 32 (85)
T ss_pred ccceEEEEEEEe-cCCcCCCCeEEEEEcCC
Confidence 357899999999 77888999999999764
No 10
>PF02973 Sialidase: Sialidase, N-terminal domain; InterPro: IPR004124 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Sialidases (GH33 from CAZY) hydrolyse alpha-(2->3)-, alpha-(2->6)-, alpha-(2->8)-glycosidic linkages of terminal sialic residues in oligosaccharides, glycoproteins, glycolipids, colominic acid and synthetic substrates. Sialidases may act as pathogenic factors in microbial infections []. The 1.8 A structure of trans-sialidase from leech (Macrobdella decora, Q27701 from SWISSPROT) in complex with 2-deoxy-2, 3-didehydro-NeuAc was solved. The refined model comprising residues 81-769 has a catalytic beta-propeller domain, a N-terminal lectin-like domain and an irregular beta-stranded domain inserted into the catalytic domain [].; GO: 0004308 exo-alpha-sialidase activity, 0005975 carbohydrate metabolic process; PDB: 2JKB_A 2VW2_A 2VW0_A 2VW1_A 2V73_B 2V72_A 1SLI_A 1SLL_A 2SLI_A 4SLI_A ....
Probab=37.69 E-value=1.1e+02 Score=28.98 Aligned_cols=106 Identities=15% Similarity=0.244 Sum_probs=62.6
Q ss_pred chhhhhccCCC-CCCCCCceEEEEEEeeeceeeccCceEEeccccccccccCCCCCeeEEE-cccccCCCCceEEEEEee
Q 017253 71 RHYAISAKIPE-FSNKNRTLVVQYSIRFEQDIECGGGYIKLLSAYVNQKKFGGDAPYSLMF-GPDICGTQKKHLHVILSY 148 (374)
Q Consensus 71 k~yaIs~~l~~-~~~~~k~LVvQYeVk~q~~i~CGGaYiKLl~~~~d~~~f~~~tpY~IMF-GPD~CG~~~~kvH~I~~~ 148 (374)
..+-||..+++ -....-+++|.|..-...++-| ||+-+.+.... -|--|+ -+.+|| +-+|-
T Consensus 18 ~~~dls~~l~~lk~L~~gTI~i~Fk~~~~~~~~s------LfsiSn~~~~n----~YF~lyv~~~~~G-------~E~R~ 80 (190)
T PF02973_consen 18 QRVDLSEDLSKLKKLEEGTIVIRFKSDSNSGIQS------LFSISNSTKGN----EYFSLYVSNNKLG-------FELRD 80 (190)
T ss_dssp CCEE-CCSCCHCCT-SSEEEEEEEEESS-SSEEE------EEEEE-TSTTS----EEEEEEEETTEEE-------EEEEE
T ss_pred CcccccchhHHHhcccccEEEEEEecCCCcceeE------EEEecCCCCcc----ceEEEEEECCEEE-------EEEec
Confidence 34667777776 4455679999998755545554 77654322211 343333 222444 67776
Q ss_pred cC--CccccccCCc----cccCCccceEEEEEc-CCCceEEEEcCeeeccCC
Q 017253 149 QG--QNYPIKKELE----CETDKLTHFYTFILR-PDASYSILIDNRERDSGS 193 (374)
Q Consensus 149 ~~--~~~~~~~~~~----~~~D~~tHlYTLii~-pdntyei~IDg~~~~~gs 193 (374)
.. .++....+.. ...+...|.-++... |+..|.+++||+.+..-+
T Consensus 81 ~~~~~~y~~~~~~~v~~~~~~~~~~~tva~~ad~~~~~ykly~NG~~v~~~~ 132 (190)
T PF02973_consen 81 TKGNQNYNFSRPAKVRGGYKNNVTFNTVAFVADSKNKGYKLYVNGELVSTLS 132 (190)
T ss_dssp TTTTCEEEEEESSE--SEETTEES-EEEEEEEETTTTEEEEEETTCEEEEEE
T ss_pred CCCCcccccccccEecccccCCceEEEEEEEEecCCCeEEEEeCCeeEEEec
Confidence 43 2344434432 345667888899888 899999999998776543
No 11
>PF10262 Rdx: Rdx family; InterPro: IPR011893 This entry represents the Rdx family of selenoproteins, which includes mammalian selenoproteins SelW, SelV, SelT and SelH, bacterial SelW-like proteins and cysteine-containing proteins of unknown function in all three domains of life. Mammalian Rdx12 and its fish selenoprotein orthologues are also members of this family []. These proteins possess a thioredoxin-like fold and a conserved CXXC or CxxU (U is selenocysteine) motif near the N terminus, suggesting a redox function. Rdx proteins can use catalytic cysteine (or selenocysteine) to form transient mixed disulphides with substrate proteins. Selenium (Se) plays an essential role in cell survival and most of the effects of Se are probably mediated by selenoproteins. Selenoprotein W (SelW) plays an important role in protection of neurons from oxidative stress during neuronal development [], []. Selenoprotein T (SelT) is conserved from plants to humans. SelT is localized to the endoplasmic reticulum through a hydrophobic domain. The protein binds to UDP-glucose:glycoprotein glucosyltransferase (UGTR), the endoplasmic reticulum (ER)-resident protein, which is known to be involved in the quality control of protein folding [, ]. The function of SelT is unknown, although it may have a role in PACAP signaling during PC12 cell differentiation [, ]. Selenoprotein H (SelH) protects neurons against UVB-induced damage by inhibiting apoptotic cell death pathways, by preventing mitochondrial depolarization, and by promoting cell survival pathways [].; GO: 0008430 selenium binding, 0045454 cell redox homeostasis; PDB: 2OJL_B 2FA8_A 2P0G_C 2NPB_A 3DEX_C 2OKA_A 2OBK_G.
Probab=35.82 E-value=42 Score=26.40 Aligned_cols=22 Identities=5% Similarity=0.054 Sum_probs=17.3
Q ss_pred EEEEEcCCCceEEEEcCeeecc
Q 017253 170 YTFILRPDASYSILIDNRERDS 191 (374)
Q Consensus 170 YTLii~pdntyei~IDg~~~~~ 191 (374)
.+|+....+.|||.+||+.+.+
T Consensus 35 v~~~~~~~G~FEV~v~g~lI~S 56 (76)
T PF10262_consen 35 VELSPGSTGAFEVTVNGELIFS 56 (76)
T ss_dssp EEEEEESTT-EEEEETTEEEEE
T ss_pred EEEEeccCCEEEEEEccEEEEE
Confidence 4666777999999999998875
No 12
>PF11025 GP40: Glycoprotein GP40 of Cryptosporidium; InterPro: IPR021035 This entry represents proteins that are highly conserved in Cryptosporidium spp. Many members are annotated as being a 60 kDa glycoprotein.
Probab=30.92 E-value=1.4e+02 Score=27.38 Aligned_cols=70 Identities=16% Similarity=0.344 Sum_probs=40.6
Q ss_pred eeccCceEEeccccccccccCCCCCeeEEEcccccCCCCceEEEEEeecCCccccccCCccccCCccceEEEEEcCCCce
Q 017253 101 IECGGGYIKLLSAYVNQKKFGGDAPYSLMFGPDICGTQKKHLHVILSYQGQNYPIKKELECETDKLTHFYTFILRPDASY 180 (374)
Q Consensus 101 i~CGGaYiKLl~~~~d~~~f~~~tpY~IMFGPD~CG~~~~kvH~I~~~~~~~~~~~~~~~~~~D~~tHlYTLii~pdnty 180 (374)
-+||-.|+--|.+..-...+.-. -|+|+..|.+-. -...+++.....+.+ |+- +.++|.
T Consensus 6 eeCgtsFvmWf~~GtpvaTlkcg-~YTiVyAP~k~~------------------t~PaPrYISGev~~V-tFe-ksd~Tv 64 (165)
T PF11025_consen 6 EECGTSFVMWFGEGTPVATLKCG-DYTIVYAPEKDQ------------------TDPAPRYISGEVKSV-TFE-KSDSTV 64 (165)
T ss_pred hhcceeEEEEecCCcceEEEecC-CEEEEEccccCC------------------CCCCCceeecceEEE-EEe-ccCCeE
Confidence 46999998888775433333221 377777776632 112233333333322 222 368999
Q ss_pred EEEEcCeeecc
Q 017253 181 SILIDNRERDS 191 (374)
Q Consensus 181 ei~IDg~~~~~ 191 (374)
.|.|||+....
T Consensus 65 kIkvd~kefst 75 (165)
T PF11025_consen 65 KIKVDGKEFST 75 (165)
T ss_pred EEEECCeEccc
Confidence 99999987654
No 13
>PF07691 PA14: PA14 domain; InterPro: IPR011658 The PA14 domain forms an insert in bacterial beta-glucosidases, other glycosidases, glycosyltransferases, proteases, amidases, yeast adhesins and bacterial toxins, including anthrax protective antigen (PA). The domain also occurs in a Dictyostelium pre-spore cell-inducing factor Psi and in fibrocystin, the mammalian protein whose mutation leads to polycystic kidney and hepatic disease. The crystal structure of PA shows that this domain (named PA14 after its location in the PA20 pro-peptide) has a beta-barrel structure. The PA14 domain sequence suggests a binding function, rather than a catalytic role. The PA14 domain distribution is compatible with carbohydrate binding [].; PDB: 2XVG_A 2XVK_A 2XVL_A 2XJU_A 2XJT_A 2XJQ_A 2XJS_A 2XJV_A 2XJP_A 2XJR_A ....
Probab=29.66 E-value=48 Score=27.84 Aligned_cols=28 Identities=29% Similarity=0.253 Sum_probs=23.0
Q ss_pred ccceEEEEEcCCCceEEEEcCeeeccCC
Q 017253 166 LTHFYTFILRPDASYSILIDNRERDSGS 193 (374)
Q Consensus 166 ~tHlYTLii~pdntyei~IDg~~~~~gs 193 (374)
.+=.||+.+..++.+++.|||+.+....
T Consensus 58 ~~G~y~f~~~~~d~~~l~idg~~vid~~ 85 (145)
T PF07691_consen 58 ETGTYTFSLTSDDGARLWIDGKLVIDNW 85 (145)
T ss_dssp SSEEEEEEEEESSEEEEEETTEEEEECS
T ss_pred cCceEEEEEEecccEEEEECCEEEEcCC
Confidence 4456999999999999999999886443
No 14
>PF15240 Pro-rich: Proline-rich
Probab=22.95 E-value=45 Score=31.40 Aligned_cols=16 Identities=25% Similarity=0.407 Sum_probs=8.9
Q ss_pred hhHHHHHHHHhhccce
Q 017253 2 MLKLLVLFLFFQISVS 17 (374)
Q Consensus 2 ~~~~~~~~~~~~~~~~ 17 (374)
||.||+.++||+++++
T Consensus 1 MLlVLLSvALLALSSA 16 (179)
T PF15240_consen 1 MLLVLLSVALLALSSA 16 (179)
T ss_pred ChhHHHHHHHHHhhhc
Confidence 4555554666666554
No 15
>PF10106 DUF2345: Uncharacterized protein conserved in bacteria (DUF2345); InterPro: IPR018769 This entry represents the C-terminal domain of a subset of the Rhs element Vgr protein family found only in genomes with type VI secretion loci. However, members of this protein family, although recognizably correlated to type VI secretion according the partial phylogenetic profiling algorithm, are often encoded far from the type VI secretion locus.
Probab=21.39 E-value=74 Score=28.67 Aligned_cols=30 Identities=23% Similarity=0.553 Sum_probs=18.6
Q ss_pred CCCCCCceEEEEEEeeeceeeccCceEEeccc
Q 017253 82 FSNKNRTLVVQYSIRFEQDIECGGGYIKLLSA 113 (374)
Q Consensus 82 ~~~~~k~LVvQYeVk~q~~i~CGGaYiKLl~~ 113 (374)
+...+..++| +-+-+=-|.|||+||+|=..
T Consensus 102 i~S~~~~I~i--~A~~~I~l~~ggs~i~l~gg 131 (155)
T PF10106_consen 102 ITSTEGKIVI--TAKKEITLNAGGSYIRLSGG 131 (155)
T ss_pred EEECCCcEEE--EecCcEEEecCCcEEEEeCC
Confidence 3333444444 34444558899999998654
No 16
>PF02747 PCNA_C: Proliferating cell nuclear antigen, C-terminal domain; InterPro: IPR022649 Proliferating cell nuclear antigen (PCNA), or cyclin, is a non-histone acidic nuclear protein [] that plays a key role in the control of eukaryotic DNA replication []. It acts as a co-factor for DNA polymerase delta, which is responsible for leading strand DNA replication []. The sequence of PCNA is well conserved between plants and animals, indicating a strong selective pressure for structure conservation, and suggesting that this type of DNA replication mechanism is conserved throughout eukaryotes []. In Saccharomyces cerevisiae (Baker's yeast), POL30, is associated with polymerase III, the yeast analog of polymerase delta. Homologues of PCNA have also been identified in the archaea (Euryarchaeota and Crenarchaeota) and in Paramecium bursaria Chlorella virus 1 (PBCV-1) and in nuclear polyhedrosis viruses. ; GO: 0003677 DNA binding, 0030337 DNA polymerase processivity factor activity, 0006275 regulation of DNA replication, 0043626 PCNA complex; PDB: 1IZ5_A 1IZ4_A 1GE8_A 1ISQ_A 3A2F_B 1RWZ_A 3P83_A 1RXM_A 1RXZ_A 1SXJ_F ....
Probab=20.71 E-value=1e+02 Score=26.53 Aligned_cols=21 Identities=19% Similarity=0.532 Sum_probs=17.5
Q ss_pred CCCceEEEEEEeeeceeeccCceEEecc
Q 017253 85 KNRTLVVQYSIRFEQDIECGGGYIKLLS 112 (374)
Q Consensus 85 ~~k~LVvQYeVk~q~~i~CGGaYiKLl~ 112 (374)
.+.||.|+|++ .+||+|+++-
T Consensus 105 ~~~Pl~l~f~~-------~~~g~l~f~L 125 (128)
T PF02747_consen 105 EDMPLKLEFEL-------ADGGSLKFYL 125 (128)
T ss_dssp TTSEEEEEEEE-------TTTEEEEEEE
T ss_pred CCCCEEEEEEe-------CCCeEEEEEE
Confidence 47899999987 4789999874
Done!