BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017256
(374 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1UL4|A Chain A, Solution Structure Of The Dna-Binding Domain Of Squamosa
Promoter Binding Protein-Like 4
Length = 94
Score = 112 bits (281), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 53/74 (71%), Positives = 60/74 (81%)
Query: 152 CQVEGCHVPLINAKDYHRRHKVCEVHSKAPKVKVLGLEQRFCQQCSRFHVVSEFDDSKRS 211
CQV+ C + AK YHRRHKVCEVH+KA V + GL QRFCQQCSRFH + EFD++KRS
Sbjct: 11 CQVDRCTADMKEAKLYHRRHKVCEVHAKASSVFLSGLNQRFCQQCSRFHDLQEFDEAKRS 70
Query: 212 CRRRLAGHNERRRK 225
CRRRLAGHNERRRK
Sbjct: 71 CRRRLAGHNERRRK 84
>pdb|1WJ0|A Chain A, Solution Structure Of The Dna-Binding Domain Of Squamosa
Promoter Binding Protein-Like 12 Lacking The Second
Zinc- Binding Site
Length = 60
Score = 82.4 bits (202), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 37/55 (67%), Positives = 41/55 (74%)
Query: 152 CQVEGCHVPLINAKDYHRRHKVCEVHSKAPKVKVLGLEQRFCQQCSRFHVVSEFD 206
CQV+ C L KDYHRRHKVCE+HSKA V G+ QRFCQQCSRFHV+ EFD
Sbjct: 6 CQVDNCGADLSKVKDYHRRHKVCEIHSKATTALVGGIMQRFCQQCSRFHVLEEFD 60
>pdb|1UL5|A Chain A, Solution Structure Of The Dna-binding Domain Of Squamosa
Promoter Binding Protein-like 7
Length = 88
Score = 81.3 bits (199), Expect = 8e-16, Method: Composition-based stats.
Identities = 35/75 (46%), Positives = 50/75 (66%)
Query: 151 RCQVEGCHVPLINAKDYHRRHKVCEVHSKAPKVKVLGLEQRFCQQCSRFHVVSEFDDSKR 210
RCQV C + K YH+RH+VC + A V + G +R+CQQC +FH++ +FD+ KR
Sbjct: 5 RCQVPDCEADISELKGYHKRHRVCLRCATASFVVLDGENKRYCQQCGKFHLLPDFDEGKR 64
Query: 211 SCRRRLAGHNERRRK 225
SCRR+L HN RR++
Sbjct: 65 SCRRKLERHNNRRKR 79
>pdb|2RGW|A Chain A, Catalytic Subunit Of M. Jannaschii Aspartate
Transcarbamoylase
pdb|2RGW|B Chain B, Catalytic Subunit Of M. Jannaschii Aspartate
Transcarbamoylase
pdb|2RGW|C Chain C, Catalytic Subunit Of M. Jannaschii Aspartate
Transcarbamoylase
pdb|2RGW|D Chain D, Catalytic Subunit Of M. Jannaschii Aspartate
Transcarbamoylase
pdb|2RGW|E Chain E, Catalytic Subunit Of M. Jannaschii Aspartate
Transcarbamoylase
pdb|2RGW|F Chain F, Catalytic Subunit Of M. Jannaschii Aspartate
Transcarbamoylase
pdb|3E2P|A Chain A, Catalytic Subunit Of M. Jannaschii Aspartate
Transcarbamoylase In An Orthorhombic Crystal Form
pdb|3E2P|B Chain B, Catalytic Subunit Of M. Jannaschii Aspartate
Transcarbamoylase In An Orthorhombic Crystal Form
pdb|3E2P|C Chain C, Catalytic Subunit Of M. Jannaschii Aspartate
Transcarbamoylase In An Orthorhombic Crystal Form
pdb|3E2P|D Chain D, Catalytic Subunit Of M. Jannaschii Aspartate
Transcarbamoylase In An Orthorhombic Crystal Form
pdb|3E2P|E Chain E, Catalytic Subunit Of M. Jannaschii Aspartate
Transcarbamoylase In An Orthorhombic Crystal Form
pdb|3E2P|F Chain F, Catalytic Subunit Of M. Jannaschii Aspartate
Transcarbamoylase In An Orthorhombic Crystal Form
pdb|3E2P|I Chain I, Catalytic Subunit Of M. Jannaschii Aspartate
Transcarbamoylase In An Orthorhombic Crystal Form
pdb|3E2P|J Chain J, Catalytic Subunit Of M. Jannaschii Aspartate
Transcarbamoylase In An Orthorhombic Crystal Form
pdb|3E2P|K Chain K, Catalytic Subunit Of M. Jannaschii Aspartate
Transcarbamoylase In An Orthorhombic Crystal Form
pdb|3E2P|L Chain L, Catalytic Subunit Of M. Jannaschii Aspartate
Transcarbamoylase In An Orthorhombic Crystal Form
pdb|3E2P|M Chain M, Catalytic Subunit Of M. Jannaschii Aspartate
Transcarbamoylase In An Orthorhombic Crystal Form
pdb|3E2P|N Chain N, Catalytic Subunit Of M. Jannaschii Aspartate
Transcarbamoylase In An Orthorhombic Crystal Form
pdb|4EKN|B Chain B, Structure Of The Catalytic Chain Of Methanococcus
Jannaschii Aspartate Transcarbamoylase In A Hexagonal
Crystal Form
Length = 306
Score = 32.0 bits (71), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 22/43 (51%)
Query: 50 AEITSTTHTSEGNAAHALMFPHGQSLYAGDGSNLHPDPHLMCL 92
A+I H SEG A A + + AGDGSN HP L+ L
Sbjct: 97 ADIIVLRHPSEGAARLASEYSQVPIINAGDGSNQHPTQTLLDL 139
>pdb|2R6I|A Chain A, Crystal Structure Of Atu1473 Protein, A Putative Chaperone
From Agrobacterium Tumefaciens
pdb|2R6I|B Chain B, Crystal Structure Of Atu1473 Protein, A Putative Chaperone
From Agrobacterium Tumefaciens
Length = 284
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 23/45 (51%), Gaps = 4/45 (8%)
Query: 84 HPDP----HLMCLKLGKRHYFEDATATSIGDRGFSMVKKGKPYYT 124
HPDP + K + +++D T + + GF+++ GKP T
Sbjct: 35 HPDPILRAQIQXQKPLPKRFYKDVTVADVEEGGFTILLDGKPLRT 79
>pdb|1GQ2|A Chain A, Malic Enzyme From Pigeon Liver
pdb|1GQ2|B Chain B, Malic Enzyme From Pigeon Liver
pdb|1GQ2|C Chain C, Malic Enzyme From Pigeon Liver
pdb|1GQ2|D Chain D, Malic Enzyme From Pigeon Liver
pdb|1GQ2|E Chain E, Malic Enzyme From Pigeon Liver
pdb|1GQ2|F Chain F, Malic Enzyme From Pigeon Liver
pdb|1GQ2|G Chain G, Malic Enzyme From Pigeon Liver
pdb|1GQ2|H Chain H, Malic Enzyme From Pigeon Liver
pdb|1GQ2|I Chain I, Malic Enzyme From Pigeon Liver
pdb|1GQ2|J Chain J, Malic Enzyme From Pigeon Liver
pdb|1GQ2|K Chain K, Malic Enzyme From Pigeon Liver
pdb|1GQ2|L Chain L, Malic Enzyme From Pigeon Liver
pdb|1GQ2|M Chain M, Malic Enzyme From Pigeon Liver
pdb|1GQ2|N Chain N, Malic Enzyme From Pigeon Liver
pdb|1GQ2|O Chain O, Malic Enzyme From Pigeon Liver
pdb|1GQ2|P Chain P, Malic Enzyme From Pigeon Liver
Length = 555
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 36/81 (44%), Gaps = 4/81 (4%)
Query: 29 MWALNNHSRFDLGNSSSLYATAEITSTTHTSEGNAAHALMFPHGQSLYAGDGSN--LHPD 86
++AL+N + + LY E + G+ + P GQ+LY G G+N + P
Sbjct: 391 IFALSNPTSKAECTAEQLYKYTE--GRGIFASGSPFDPVTLPSGQTLYPGQGNNSYVFPG 448
Query: 87 PHLMCLKLGKRHYFEDATATS 107
L + G +H +D T+
Sbjct: 449 VALGVISCGLKHIGDDVFLTT 469
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.131 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,187,894
Number of Sequences: 62578
Number of extensions: 318191
Number of successful extensions: 499
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 495
Number of HSP's gapped (non-prelim): 7
length of query: 374
length of database: 14,973,337
effective HSP length: 100
effective length of query: 274
effective length of database: 8,715,537
effective search space: 2388057138
effective search space used: 2388057138
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)