Query 017256
Match_columns 374
No_of_seqs 163 out of 289
Neff 2.8
Searched_HMMs 46136
Date Fri Mar 29 06:58:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017256.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017256hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03110 SBP: SBP domain; Int 100.0 7.9E-40 1.7E-44 262.3 -2.6 78 151-228 1-78 (79)
2 KOG4846 Nuclear receptor [Sign 57.0 8.3 0.00018 40.9 2.6 49 146-197 129-192 (538)
3 PF03770 IPK: Inositol polypho 50.2 3.9 8.4E-05 37.2 -0.9 20 85-104 12-31 (197)
4 PF14901 Jiv90: Cleavage induc 48.8 8.5 0.00018 32.9 1.0 18 189-206 26-43 (94)
5 PF14776 UNC-79: Cation-channe 37.2 31 0.00066 37.2 3.1 70 172-273 263-341 (525)
6 PF11680 DUF3276: Protein of u 36.8 17 0.00037 32.4 1.1 18 91-108 16-33 (124)
7 PLN02667 inositol polyphosphat 33.9 17 0.00036 35.9 0.6 19 85-103 91-109 (286)
8 TIGR03831 YgiT_finger YgiT-typ 29.8 22 0.00047 24.4 0.5 20 179-198 21-40 (46)
9 PRK06424 transcription factor; 28.5 29 0.00063 31.1 1.1 21 181-201 14-34 (144)
10 PRK00241 nudC NADH pyrophospha 25.4 17 0.00037 34.7 -0.9 36 165-201 93-128 (256)
11 TIGR00270 conserved hypothetic 22.5 43 0.00093 30.2 1.1 20 180-199 14-33 (154)
No 1
>PF03110 SBP: SBP domain; InterPro: IPR004333 The SBP plant protein domain is a sequence specific DNA-binding domain []. Proteins with this domain probably function as transcription factors involved in the control of early flower development. The domain contains 10 conserved cysteine and histidine residues that probably are zinc ligands.; GO: 0003677 DNA binding, 0005634 nucleus; PDB: 1UL4_A 1WJ0_A 1UL5_A.
Probab=100.00 E-value=7.9e-40 Score=262.29 Aligned_cols=78 Identities=67% Similarity=1.154 Sum_probs=63.2
Q ss_pred ceeecCCCccccCCccccccccchhhhcCCCeEeECCchhhHHHHhhccccccccccccchHHHHHhhHHHhhcCCCc
Q 017256 151 RCQVEGCHVPLINAKDYHRRHKVCEVHSKAPKVKVLGLEQRFCQQCSRFHVVSEFDDSKRSCRRRLAGHNERRRKSSH 228 (374)
Q Consensus 151 ~CQVdGC~~dLs~aK~YhrRhRVCe~HsKAp~Vvv~G~~qRFCQQCsRFH~LsEFDg~KRSCR~rLarHN~RRRk~~~ 228 (374)
+||||||++||+.+|.||+||||||.|+|||+|+++|+++||||||+|||+|+||||+|||||++|++||+|||++++
T Consensus 1 ~CqV~gC~~dL~~~k~Y~rR~rICe~H~ka~~V~~~G~~~RFCQQC~rfh~l~eFdg~kRSCr~~L~~h~~RRr~~~~ 78 (79)
T PF03110_consen 1 RCQVDGCGADLSGAKEYHRRYRICEEHAKAPVVVVDGVEQRFCQQCGRFHPLSEFDGGKRSCRARLARHNERRRKRQQ 78 (79)
T ss_dssp C-SSTTEE-EETS--SSCCCTT--HHHHTHSEEEETTEEEEE-TTTSSEEETTCB-SSTTSBSTTTT-SSS---S-S-
T ss_pred CCcCCCCCcchhhhHHHhhccCcchhhcCCCeEEECChhHHHHHHHHcCCCHHHHcchhhhHHHHHHHHHHHhccccC
Confidence 599999999999999999999999999999999999999999999999999999999999999999999999999875
No 2
>KOG4846 consensus Nuclear receptor [Signal transduction mechanisms]
Probab=57.00 E-value=8.3 Score=40.89 Aligned_cols=49 Identities=22% Similarity=0.430 Sum_probs=34.6
Q ss_pred CCCCCceeecCCCc--------cccCCcccccc-------ccchhhhcCCCeEeECCchhhHHHHhh
Q 017256 146 TATVPRCQVEGCHV--------PLINAKDYHRR-------HKVCEVHSKAPKVKVLGLEQRFCQQCS 197 (374)
Q Consensus 146 ~~~~p~CQVdGC~~--------dLs~aK~YhrR-------hRVCe~HsKAp~Vvv~G~~qRFCQQCs 197 (374)
....-.|+|.|=.+ ...++|.|||| ||-| .|+..-.|.-.-.--||+|.
T Consensus 129 ~~~~~lCkVCgDkASGfHYGV~aCEGCKGFFRRSIQqkI~YrrC---lk~e~C~I~R~nRNRCQ~CR 192 (538)
T KOG4846|consen 129 GKAISLCKVCGDKASGFHYGVTACEGCKGFFRRSIQQKIDYRRC---LKQEVCEIKRENRNRCQYCR 192 (538)
T ss_pred cceeEeehhhccccccceeceeecccchHHHHHHHHHhhhHHHH---hhhhceehhhhccchhhhhh
Confidence 34567899954322 35678999999 5555 56777777666777899996
No 3
>PF03770 IPK: Inositol polyphosphate kinase ; InterPro: IPR005522 ArgRIII has been demonstrated to be an inositol polyphosphate kinase [] which catalyses the reaction ATP + 1D-myo-inositol 1,4,5-trisphosphate = ADP + 1D-myo-inositol 1,3,4,5-tetrakisphosphate .; GO: 0008440 inositol trisphosphate 3-kinase activity; PDB: 2IF8_B 2IEW_B 1W2C_A 1W2F_A 1W2D_A 2A98_A 2AQX_A 1TZD_A.
Probab=50.15 E-value=3.9 Score=37.18 Aligned_cols=20 Identities=35% Similarity=0.644 Sum_probs=15.2
Q ss_pred CCCcccccccCceeeecccc
Q 017256 85 PDPHLMCLKLGKRHYFEDAT 104 (374)
Q Consensus 85 ~d~~li~LKlGkr~YFed~~ 104 (374)
.-|-+|+||+|+|+|-+++.
T Consensus 12 ~~PcVlDiKmG~rt~~~~a~ 31 (197)
T PF03770_consen 12 RKPCVLDIKMGTRTYDPDAS 31 (197)
T ss_dssp SSEEEEEEEESS-SS-HHHH
T ss_pred CCceEEEEEEcCeEcCcccc
Confidence 45789999999999999853
No 4
>PF14901 Jiv90: Cleavage inducing molecular chaperone
Probab=48.82 E-value=8.5 Score=32.90 Aligned_cols=18 Identities=39% Similarity=0.708 Sum_probs=14.7
Q ss_pred hhhHHHHhhccccccccc
Q 017256 189 EQRFCQQCSRFHVVSEFD 206 (374)
Q Consensus 189 ~qRFCQQCsRFH~LsEFD 206 (374)
.-|+||+|..+|+..+=|
T Consensus 26 ~AR~C~~C~~~H~Ak~gD 43 (94)
T PF14901_consen 26 AARYCQDCKIRHPAKEGD 43 (94)
T ss_pred hhHhHHHhhhhcccccCC
Confidence 359999999999876544
No 5
>PF14776 UNC-79: Cation-channel complex subunit UNC-79
Probab=37.18 E-value=31 Score=37.24 Aligned_cols=70 Identities=27% Similarity=0.397 Sum_probs=39.7
Q ss_pred cchhhhcCCCeEeE---------CCchhhHHHHhhccccccccccccchHHHHHhhHHHhhcCCCccccccCCccccccc
Q 017256 172 KVCEVHSKAPKVKV---------LGLEQRFCQQCSRFHVVSEFDDSKRSCRRRLAGHNERRRKSSHESLSRNSSQGRALS 242 (374)
Q Consensus 172 RVCe~HsKAp~Vvv---------~G~~qRFCQQCsRFH~LsEFDg~KRSCR~rLarHN~RRRk~~~d~~~~n~s~~~~~s 242 (374)
|-|.-+.|..+|+- ++++.|+||||. -.+||.||-.- +-.
T Consensus 263 K~C~S~~k~AvvtCFS~eCt~~~gn~PiRlC~~Ch------------------~~~H~n~~~~d----------Hi~--- 311 (525)
T PF14776_consen 263 KNCRSSDKSAVVTCFSTECTSYNGNRPIRLCQQCH------------------SNRHNNRRGSD----------HIY--- 311 (525)
T ss_pred CCCcCCCCCeEEEEechhhccccCCCcchhHHHHh------------------hhhcccccccc----------eee---
Confidence 44444555555542 778899999998 34777766432 101
Q ss_pred ccccCCCcccCCCCCChhhhHHHHHHHHhhh
Q 017256 243 LLSSKAESWVSSSDLSSRCSAALRELIAENR 273 (374)
Q Consensus 243 l~s~k~ssW~spsdlS~rsSaAL~~liAEnR 273 (374)
-.+-...|....+.-.---.|+.-|.-|+.
T Consensus 312 -h~~~~~~W~~d~e~q~~~VEAIVsLLkEa~ 341 (525)
T PF14776_consen 312 -HRGLPCVWSMDSEMQSYMVEAIVSLLKEAK 341 (525)
T ss_pred -ecCCCCccccCHHHHHHHHHHHHHHHhccc
Confidence 111246777666543333456666666654
No 6
>PF11680 DUF3276: Protein of unknown function (DUF3276); InterPro: IPR021694 This bacterial family of proteins has no known function. ; PDB: 3NM7_C 3N8B_A.
Probab=36.84 E-value=17 Score=32.41 Aligned_cols=18 Identities=39% Similarity=0.593 Sum_probs=12.5
Q ss_pred ccccCceeeecccccccC
Q 017256 91 CLKLGKRHYFEDATATSI 108 (374)
Q Consensus 91 ~LKlGkr~YFed~~~~~~ 108 (374)
-|+.||||||=|+..+..
T Consensus 16 ~v~agkRtYFFDVK~~r~ 33 (124)
T PF11680_consen 16 VVKAGKRTYFFDVKENRK 33 (124)
T ss_dssp E--SSSEEEEEEEEE-TT
T ss_pred eeecCCeeEEEEeecccC
Confidence 589999999999976543
No 7
>PLN02667 inositol polyphosphate multikinase
Probab=33.87 E-value=17 Score=35.85 Aligned_cols=19 Identities=32% Similarity=0.746 Sum_probs=16.9
Q ss_pred CCCcccccccCceeeeccc
Q 017256 85 PDPHLMCLKLGKRHYFEDA 103 (374)
Q Consensus 85 ~d~~li~LKlGkr~YFed~ 103 (374)
.-|-+++||+|.|+|.+++
T Consensus 91 ~~PcVlDlKmG~rt~~~~a 109 (286)
T PLN02667 91 TKPCVMDVKMGSRTWYPEA 109 (286)
T ss_pred CCCeEEEEEeccEecCCCC
Confidence 4489999999999999986
No 8
>TIGR03831 YgiT_finger YgiT-type zinc finger domain. This domain model describes a small domain with two copies of a putative zinc-binding motif CXXC (usually CXXCG). Most member proteins consist largely of this domain or else carry an additional C-terminal helix-turn-helix domain, resembling that of the phage protein Cro and modeled by pfam01381.
Probab=29.85 E-value=22 Score=24.41 Aligned_cols=20 Identities=15% Similarity=0.405 Sum_probs=17.4
Q ss_pred CCCeEeECCchhhHHHHhhc
Q 017256 179 KAPKVKVLGLEQRFCQQCSR 198 (374)
Q Consensus 179 KAp~Vvv~G~~qRFCQQCsR 198 (374)
+--.+++.+++..+|++|+.
T Consensus 21 ~~~~~~i~~vp~~~C~~CGE 40 (46)
T TIGR03831 21 GGELIVIENVPALVCPQCGE 40 (46)
T ss_pred CCEEEEEeCCCccccccCCC
Confidence 56678899999999999994
No 9
>PRK06424 transcription factor; Provisional
Probab=28.50 E-value=29 Score=31.14 Aligned_cols=21 Identities=29% Similarity=0.637 Sum_probs=18.5
Q ss_pred CeEeECCchhhHHHHhhcccc
Q 017256 181 PKVKVLGLEQRFCQQCSRFHV 201 (374)
Q Consensus 181 p~Vvv~G~~qRFCQQCsRFH~ 201 (374)
-.|+|+|.+.+-|..|.+|=.
T Consensus 14 ~~v~ieg~~l~vC~~Ca~~G~ 34 (144)
T PRK06424 14 TKVMIDGAILNVCDDCAKFGT 34 (144)
T ss_pred eEEEEcCeeeehhHHHHHcCC
Confidence 368999999999999999943
No 10
>PRK00241 nudC NADH pyrophosphatase; Reviewed
Probab=25.43 E-value=17 Score=34.73 Aligned_cols=36 Identities=14% Similarity=0.289 Sum_probs=27.8
Q ss_pred ccccccccchhhhcCCCeEeECCchhhHHHHhhcccc
Q 017256 165 KDYHRRHKVCEVHSKAPKVKVLGLEQRFCQQCSRFHV 201 (374)
Q Consensus 165 K~YhrRhRVCe~HsKAp~Vvv~G~~qRFCQQCsRFH~ 201 (374)
..+|++||-|..+-....+ ..+...|.|..|+..|-
T Consensus 93 ~~w~~~~~fC~~CG~~~~~-~~~~~~~~C~~c~~~~y 128 (256)
T PRK00241 93 AEFYRSHRFCGYCGHPMHP-SKTEWAMLCPHCRERYY 128 (256)
T ss_pred HHHhhcCccccccCCCCee-cCCceeEECCCCCCEEC
Confidence 4689999999998886554 45556788999997653
No 11
>TIGR00270 conserved hypothetical protein TIGR00270.
Probab=22.48 E-value=43 Score=30.22 Aligned_cols=20 Identities=30% Similarity=0.697 Sum_probs=18.2
Q ss_pred CCeEeECCchhhHHHHhhcc
Q 017256 180 APKVKVLGLEQRFCQQCSRF 199 (374)
Q Consensus 180 Ap~Vvv~G~~qRFCQQCsRF 199 (374)
.-.|.|+|.+..-|..|.+|
T Consensus 14 ~~~v~iega~l~vC~~C~k~ 33 (154)
T TIGR00270 14 GFKIVIEGSEMTVCGECRKF 33 (154)
T ss_pred CeEEEEcCeEEehhhhHHhc
Confidence 35788999999999999999
Done!