Query 017256
Match_columns 374
No_of_seqs 163 out of 289
Neff 2.8
Searched_HMMs 29240
Date Mon Mar 25 11:29:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017256.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017256hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ul4_A SPL4, squamosa promoter 100.0 6E-43 2.1E-47 287.2 -1.5 87 147-233 6-92 (94)
2 1ul5_A SPL7, squamosa promoter 100.0 4.7E-42 1.6E-46 279.0 -2.7 84 148-231 2-85 (88)
3 1wj0_A Squamosa promoter-bindi 100.0 1.8E-32 6E-37 209.5 1.1 59 148-206 2-60 (60)
4 2a98_A Inositol 1,4,5-trisphos 36.7 8.6 0.00029 35.9 0.5 20 85-104 54-73 (259)
5 2iew_A Inositol polyphosphate 33.0 8.7 0.0003 37.2 -0.2 19 85-103 125-143 (363)
6 4frf_A Inositol polyphosphate 31.7 9 0.00031 35.4 -0.2 19 85-103 81-99 (275)
7 1w2f_A Inositol-trisphosphate 31.0 10 0.00036 35.6 0.0 19 85-103 71-89 (276)
8 2aqx_A Predicted: inositol 1,4 29.0 12 0.0004 35.7 -0.0 18 85-102 84-101 (289)
9 4hji_A CS1 pilin, CS1 fimbrial 24.5 22 0.00076 32.2 1.0 13 331-343 23-35 (175)
10 1vk6_A NADH pyrophosphatase; 1 19.4 17 0.00059 33.3 -0.8 35 165-200 101-135 (269)
No 1
>1ul4_A SPL4, squamosa promoter binding protein-like 4; transcription factor, SBP, flower development, DNA binding protein, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.72.1.1
Probab=100.00 E-value=6e-43 Score=287.16 Aligned_cols=87 Identities=66% Similarity=1.054 Sum_probs=80.4
Q ss_pred CCCCceeecCCCccccCCccccccccchhhhcCCCeEeECCchhhHHHHhhccccccccccccchHHHHHhhHHHhhcCC
Q 017256 147 ATVPRCQVEGCHVPLINAKDYHRRHKVCEVHSKAPKVKVLGLEQRFCQQCSRFHVVSEFDDSKRSCRRRLAGHNERRRKS 226 (374)
Q Consensus 147 ~~~p~CQVdGC~~dLs~aK~YhrRhRVCe~HsKAp~Vvv~G~~qRFCQQCsRFH~LsEFDg~KRSCR~rLarHN~RRRk~ 226 (374)
.+.++||||||.+||+.+|+||+||||||.|+|||+|+|+|+++||||||+|||+|+|||+.|||||+||++||+||||+
T Consensus 6 ~~~~~CqV~GC~~dL~~~k~Y~rR~rvCe~H~ka~~V~~~G~~~RFCQQCsrFH~L~eFD~~kRSCR~rL~~hn~RRRk~ 85 (94)
T 1ul4_A 6 SGLRLCQVDRCTADMKEAKLYHRRHKVCEVHAKASSVFLSGLNQRFCQQCSRFHDLQEFDEAKRSCRRRLAGHNERRRKS 85 (94)
T ss_dssp --CCCCSSTTCCCCCTTCCHHHHHTTCCHHHHTCSCEEETTEEEEECTTTSSEEETTTCCSSCCSCSTTTTCCCCCCCSC
T ss_pred CCCCceecCCCCcchhhHHHHHHhhhhhHHHhcCCEEEECChhHHHHHHHhccCCHHHhccccchHHHHHHHHHHHhccC
Confidence 36889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Ccccccc
Q 017256 227 SHESLSR 233 (374)
Q Consensus 227 ~~d~~~~ 233 (374)
++|+.+.
T Consensus 86 ~~~~~~~ 92 (94)
T 1ul4_A 86 SGESGPS 92 (94)
T ss_dssp CCC----
T ss_pred CCCcCCC
Confidence 9998753
No 2
>1ul5_A SPL7, squamosa promoter binding protein-like 7; transcription factor, SBP, flower development, DNA binding protein, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.72.1.1
Probab=100.00 E-value=4.7e-42 Score=279.00 Aligned_cols=84 Identities=43% Similarity=0.882 Sum_probs=80.3
Q ss_pred CCCceeecCCCccccCCccccccccchhhhcCCCeEeECCchhhHHHHhhccccccccccccchHHHHHhhHHHhhcCCC
Q 017256 148 TVPRCQVEGCHVPLINAKDYHRRHKVCEVHSKAPKVKVLGLEQRFCQQCSRFHVVSEFDDSKRSCRRRLAGHNERRRKSS 227 (374)
Q Consensus 148 ~~p~CQVdGC~~dLs~aK~YhrRhRVCe~HsKAp~Vvv~G~~qRFCQQCsRFH~LsEFDg~KRSCR~rLarHN~RRRk~~ 227 (374)
..++||||||++||+.+|+||+||||||.|+|||+|+|+|+++||||||+|||+|+|||+.|||||+||++||+||||++
T Consensus 2 ~~~~CqV~GC~~dLs~~k~Y~rR~rvCe~H~ka~~v~~~G~~~RFCQQC~rFH~L~eFD~~kRSCR~rL~~hn~RRR~~~ 81 (88)
T 1ul5_A 2 SVARCQVPDCEADISELKGYHKRHRVCLRCATASFVVLDGENKRYCQQCGKFHLLPDFDEGKRSCRRKLERHNNRRKRKP 81 (88)
T ss_dssp -CCSCEETTEECCCSSCCSSSGGGTCCHHHHHHSEEEETTEEEEECTTTSSEEEGGGBCSSTTSBSSSCCCSSSCCCCCS
T ss_pred CCCeeecCCCCCChhHhhHHHhhccccHHHcCCCEEEECCEeeHHHHHhccccChhhhccccchHHHHHHHHHHHhccCC
Confidence 36899999999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred cccc
Q 017256 228 HESL 231 (374)
Q Consensus 228 ~d~~ 231 (374)
+++.
T Consensus 82 ~~~~ 85 (88)
T 1ul5_A 82 VDKG 85 (88)
T ss_dssp CSSC
T ss_pred ccCC
Confidence 7763
No 3
>1wj0_A Squamosa promoter-binding protein-like 12; DNA-binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.72.1.1
Probab=99.97 E-value=1.8e-32 Score=209.47 Aligned_cols=59 Identities=63% Similarity=1.094 Sum_probs=57.2
Q ss_pred CCCceeecCCCccccCCccccccccchhhhcCCCeEeECCchhhHHHHhhccccccccc
Q 017256 148 TVPRCQVEGCHVPLINAKDYHRRHKVCEVHSKAPKVKVLGLEQRFCQQCSRFHVVSEFD 206 (374)
Q Consensus 148 ~~p~CQVdGC~~dLs~aK~YhrRhRVCe~HsKAp~Vvv~G~~qRFCQQCsRFH~LsEFD 206 (374)
+.++||||||++||+.+|+||+||||||.|+|||+|+|+|+++||||||+|||+|+|||
T Consensus 2 ~~~~CqV~gC~~dl~~~k~Y~rR~rvCe~H~ka~~v~~~G~~~RFCQQCsrFH~L~eFD 60 (60)
T 1wj0_A 2 SAICCQVDNCGADLSKVKDYHRRHKVCEIHSKATTALVGGIMQRFCQQCSRFHVLEEFD 60 (60)
T ss_dssp -CEECSSTTCCCEETSCCSSTTTTTCCHHHHTCSCEEETTEEECCCSSSCSCCBTTSCC
T ss_pred CCceeecCCCCcChhHhHHHhhccccChhHcCCCEEEECCEEEehhhhccCccCcccCC
Confidence 46899999999999999999999999999999999999999999999999999999998
No 4
>2a98_A Inositol 1,4,5-trisphosphate 3-kinase C; structural genomics, structural genomics consortium, SGC, transferase; HET: I3P; 2.60A {Homo sapiens}
Probab=36.70 E-value=8.6 Score=35.91 Aligned_cols=20 Identities=35% Similarity=0.688 Sum_probs=17.6
Q ss_pred CCCcccccccCceeeecccc
Q 017256 85 PDPHLMCLKLGKRHYFEDAT 104 (374)
Q Consensus 85 ~d~~li~LKlGkr~YFed~~ 104 (374)
..|-+|+||+|.|+|-++..
T Consensus 54 ~~PcVmDiKmG~Rt~~~~~~ 73 (259)
T 2a98_A 54 EGPSIMDCKMGSRTYLEEEL 73 (259)
T ss_dssp SSCEEEEEEESSCCSCGGGT
T ss_pred CCceEEEEEEeeeecCchhh
Confidence 56899999999999999853
No 5
>2iew_A Inositol polyphosphate multikinase; ATP-grAsp fold related, transferase; 2.00A {Saccharomyces cerevisiae} PDB: 2if8_A*
Probab=32.96 E-value=8.7 Score=37.23 Aligned_cols=19 Identities=37% Similarity=0.635 Sum_probs=17.0
Q ss_pred CCCcccccccCceeeeccc
Q 017256 85 PDPHLMCLKLGKRHYFEDA 103 (374)
Q Consensus 85 ~d~~li~LKlGkr~YFed~ 103 (374)
..|-||+||+|.|+|-+++
T Consensus 125 ~~PcVlDiKmG~Rt~~~~A 143 (363)
T 2iew_A 125 SKPNILDIKLGKTLYDSKA 143 (363)
T ss_dssp SSEEEEEEEECSCCCCTTC
T ss_pred CCceEEEEEEcCEECCCCC
Confidence 5589999999999999985
No 6
>4frf_A Inositol polyphosphate multikinase alpha; ATP grAsp, inositol phosphate kinase, transferase; 2.90A {Arabidopsis thaliana}
Probab=31.74 E-value=9 Score=35.44 Aligned_cols=19 Identities=37% Similarity=0.800 Sum_probs=15.9
Q ss_pred CCCcccccccCceeeeccc
Q 017256 85 PDPHLMCLKLGKRHYFEDA 103 (374)
Q Consensus 85 ~d~~li~LKlGkr~YFed~ 103 (374)
..|-||+||+|.|+|-+++
T Consensus 81 ~~PcVlDiKmG~Rt~~~~a 99 (275)
T 4frf_A 81 TKPSVMDVKMGSRTWYPDA 99 (275)
T ss_dssp SSEEEEEEEECSSSCCTTS
T ss_pred CCCceeEeeeecEEcCCCC
Confidence 5589999999999996554
No 7
>1w2f_A Inositol-trisphosphate 3-kinase A; inositol phosphate kinase, transferase, calmodulin-binding; 1.8A {Homo sapiens} SCOP: d.143.1.3 PDB: 1tzd_A* 1w2d_A* 1w2c_A*
Probab=30.96 E-value=10 Score=35.65 Aligned_cols=19 Identities=32% Similarity=0.649 Sum_probs=17.1
Q ss_pred CCCcccccccCceeeeccc
Q 017256 85 PDPHLMCLKLGKRHYFEDA 103 (374)
Q Consensus 85 ~d~~li~LKlGkr~YFed~ 103 (374)
..|-+|+||+|.|+|-++.
T Consensus 71 ~~PcVmDiKmG~rt~~~~~ 89 (276)
T 1w2f_A 71 DGPCVLDCKMGVRTYLEEE 89 (276)
T ss_dssp SSCEEEEEEESSCCSCHHH
T ss_pred CCceEEEEEEeeeecCchh
Confidence 5689999999999999984
No 8
>2aqx_A Predicted: inositol 1,4,5-trisphosphate 3-kinase; IP3K, ITPKB, IP3-3K, IP3-3KB, IP3, calmodu binding, transferase; HET: ATP; 2.50A {Mus musculus}
Probab=29.04 E-value=12 Score=35.65 Aligned_cols=18 Identities=39% Similarity=0.720 Sum_probs=16.7
Q ss_pred CCCcccccccCceeeecc
Q 017256 85 PDPHLMCLKLGKRHYFED 102 (374)
Q Consensus 85 ~d~~li~LKlGkr~YFed 102 (374)
..|-+|+||+|.|+|-++
T Consensus 84 ~~PcVmDiKmG~Rt~~~~ 101 (289)
T 2aqx_A 84 DSPCVMDCKMGVRTYLEE 101 (289)
T ss_dssp SSCEEEEEEESSCSSCHH
T ss_pred CCceEEEEeEeeeEcCcc
Confidence 568999999999999998
No 9
>4hji_A CS1 pilin, CS1 fimbrial subunit A; CS1 pilus, colonization factor, chaperone-usher famil bacterial surface, cell adhesion; 1.60A {Escherichia coli}
Probab=24.50 E-value=22 Score=32.16 Aligned_cols=13 Identities=38% Similarity=0.511 Sum_probs=11.3
Q ss_pred EEEeecccCCccc
Q 017256 331 VTLDLMQAPTEDL 343 (374)
Q Consensus 331 vTLdLmqa~~~a~ 343 (374)
-||||+|+-++|+
T Consensus 23 ~tld~lqaDGsAL 35 (175)
T 4hji_A 23 PTVDLLQSDGSAL 35 (175)
T ss_dssp CSEEEEETTSCBC
T ss_pred cchheeecCCCcC
Confidence 3899999988887
No 10
>1vk6_A NADH pyrophosphatase; 1790429, structural genomics, JCSG, PS protein structure initiative, joint center for structural G hydrolase; HET: MSE; 2.20A {Escherichia coli} SCOP: d.113.1.4 d.113.1.4 g.41.14.1 PDB: 2gb5_A
Probab=19.42 E-value=17 Score=33.25 Aligned_cols=35 Identities=17% Similarity=0.288 Sum_probs=26.3
Q ss_pred ccccccccchhhhcCCCeEeECCchhhHHHHhhccc
Q 017256 165 KDYHRRHKVCEVHSKAPKVKVLGLEQRFCQQCSRFH 200 (374)
Q Consensus 165 K~YhrRhRVCe~HsKAp~Vvv~G~~qRFCQQCsRFH 200 (374)
..++++++-|..+- .+.+..++...+.|..|+..|
T Consensus 101 ~~w~~~~~fC~~CG-~~~~~~~~~~~~~C~~C~~~~ 135 (269)
T 1vk6_A 101 AEFYRSHKYCGYCG-HEMYPSKTEWAMLCSHCRERY 135 (269)
T ss_dssp HHHHHTTSBCTTTC-CBEEECSSSSCEEESSSSCEE
T ss_pred HhhhhcCCccccCC-CcCccCCCceeeeCCCCCCEe
Confidence 45788889998865 455667888888999998654
Done!