Query 017258
Match_columns 374
No_of_seqs 251 out of 1424
Neff 6.1
Searched_HMMs 46136
Date Fri Mar 29 06:59:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017258.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017258hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2893 Zn finger protein [Gen 99.9 1E-25 2.2E-30 208.8 21.4 149 1-155 1-151 (341)
2 KOG2462 C2H2-type Zn-finger pr 99.6 8.8E-17 1.9E-21 152.6 5.2 86 11-108 160-248 (279)
3 KOG2462 C2H2-type Zn-finger pr 99.5 1.4E-15 3.1E-20 144.4 2.4 74 12-97 188-265 (279)
4 KOG3623 Homeobox transcription 99.4 1.7E-13 3.8E-18 143.1 1.4 79 6-96 888-971 (1007)
5 KOG3576 Ovo and related transc 99.3 6.1E-13 1.3E-17 121.7 0.9 81 9-101 115-199 (267)
6 KOG3576 Ovo and related transc 99.1 1.5E-11 3.3E-16 112.6 1.9 87 12-102 146-239 (267)
7 KOG3623 Homeobox transcription 99.0 6.3E-11 1.4E-15 124.3 1.7 72 13-96 242-330 (1007)
8 KOG1074 Transcriptional repres 98.8 9.4E-10 2E-14 117.3 1.7 83 12-102 605-695 (958)
9 PHA00733 hypothetical protein 98.8 3.8E-09 8.2E-14 91.5 4.0 75 12-100 41-124 (128)
10 KOG1074 Transcriptional repres 98.7 2.7E-09 5.9E-14 113.8 1.8 77 9-85 351-431 (958)
11 KOG3608 Zn finger proteins [Ge 98.6 6.7E-08 1.4E-12 95.1 5.6 87 14-101 266-378 (467)
12 KOG3608 Zn finger proteins [Ge 98.5 4E-08 8.6E-13 96.6 2.9 89 9-99 204-316 (467)
13 PHA02768 hypothetical protein; 98.5 3.1E-08 6.7E-13 73.3 1.4 42 36-91 6-47 (55)
14 PHA00733 hypothetical protein 98.5 1E-07 2.2E-12 82.6 4.3 52 9-60 70-124 (128)
15 PHA02768 hypothetical protein; 98.5 7.7E-08 1.7E-12 71.2 2.2 41 12-52 6-48 (55)
16 PLN03086 PRLI-interacting fact 98.5 2.5E-07 5.4E-12 97.3 6.8 57 9-68 450-509 (567)
17 KOG3993 Transcription factor ( 98.4 8.1E-08 1.8E-12 96.3 1.3 92 13-105 269-386 (500)
18 PHA00732 hypothetical protein 98.1 1.7E-06 3.7E-11 69.0 2.4 40 14-56 4-45 (79)
19 PHA00732 hypothetical protein 97.9 8.7E-06 1.9E-10 64.9 2.9 50 35-101 1-50 (79)
20 PHA00616 hypothetical protein 97.9 4.9E-06 1.1E-10 58.9 1.1 32 35-66 1-32 (44)
21 KOG3993 Transcription factor ( 97.6 2.2E-05 4.8E-10 79.1 1.0 51 11-61 295-382 (500)
22 PF13465 zf-H2C2_2: Zinc-finge 97.5 4E-05 8.7E-10 48.2 1.4 25 50-86 1-25 (26)
23 PF12756 zf-C2H2_2: C2H2 type 97.5 5E-05 1.1E-09 61.0 2.1 71 14-98 2-73 (100)
24 COG5189 SFP1 Putative transcri 97.5 2.9E-05 6.2E-10 75.9 0.6 65 33-97 347-420 (423)
25 PF13465 zf-H2C2_2: Zinc-finge 97.5 5.1E-05 1.1E-09 47.7 1.4 22 26-47 1-26 (26)
26 KOG2893 Zn finger protein [Gen 97.5 0.0011 2.3E-08 62.9 10.6 53 293-345 284-336 (341)
27 PF05605 zf-Di19: Drought indu 97.4 0.00015 3.2E-09 53.4 3.8 43 14-59 5-53 (54)
28 PLN03086 PRLI-interacting fact 97.4 0.00017 3.8E-09 76.2 4.6 32 33-67 451-482 (567)
29 PF00096 zf-C2H2: Zinc finger, 97.3 9.5E-05 2.1E-09 44.6 1.1 22 36-57 1-22 (23)
30 PF13894 zf-C2H2_4: C2H2-type 97.2 0.00014 3.1E-09 43.5 1.4 24 36-59 1-24 (24)
31 PF05605 zf-Di19: Drought indu 97.2 0.00043 9.3E-09 50.9 3.9 53 35-100 2-54 (54)
32 COG5189 SFP1 Putative transcri 97.2 0.00014 3.1E-09 71.2 1.4 47 9-55 346-418 (423)
33 PF13912 zf-C2H2_6: C2H2-type 96.8 0.00045 9.8E-09 43.3 1.0 25 35-59 1-25 (27)
34 PF00096 zf-C2H2: Zinc finger, 96.8 0.00064 1.4E-08 40.9 1.3 23 76-98 1-23 (23)
35 PHA00616 hypothetical protein 96.8 0.00064 1.4E-08 48.2 1.5 30 76-105 2-31 (44)
36 PF13894 zf-C2H2_4: C2H2-type 96.3 0.0025 5.4E-08 37.9 1.7 24 76-99 1-24 (24)
37 smart00355 ZnF_C2H2 zinc finge 96.1 0.0037 8.1E-08 37.5 2.0 23 36-58 1-23 (26)
38 PF09237 GAGA: GAGA factor; I 96.0 0.0019 4.1E-08 47.2 0.2 31 33-63 22-52 (54)
39 PF13912 zf-C2H2_6: C2H2-type 95.5 0.007 1.5E-07 37.7 1.3 25 76-100 2-26 (27)
40 smart00355 ZnF_C2H2 zinc finge 95.2 0.017 3.7E-07 34.5 2.4 24 76-99 1-24 (26)
41 PF12171 zf-C2H2_jaz: Zinc-fin 95.1 0.009 2E-07 37.6 1.0 21 12-32 2-22 (27)
42 PF13909 zf-H2C2_5: C2H2-type 95.0 0.013 2.7E-07 35.7 1.3 24 36-60 1-24 (24)
43 KOG2231 Predicted E3 ubiquitin 94.8 0.024 5.1E-07 61.2 3.7 68 13-96 184-260 (669)
44 KOG2231 Predicted E3 ubiquitin 94.7 0.034 7.4E-07 60.0 4.4 21 21-41 124-146 (669)
45 PF12874 zf-met: Zinc-finger o 94.4 0.018 3.9E-07 35.2 1.0 19 37-55 2-20 (25)
46 PF12874 zf-met: Zinc-finger o 94.2 0.03 6.6E-07 34.1 1.6 21 12-32 1-21 (25)
47 PRK04860 hypothetical protein; 94.0 0.021 4.6E-07 51.5 1.0 39 34-88 118-156 (160)
48 COG5048 FOG: Zn-finger [Genera 93.7 0.023 5E-07 55.8 0.7 53 14-66 292-354 (467)
49 COG5236 Uncharacterized conser 93.6 0.073 1.6E-06 53.1 3.9 73 13-101 222-307 (493)
50 KOG1146 Homeobox protein [Gene 93.5 0.031 6.7E-07 63.8 1.3 84 14-97 439-540 (1406)
51 PF12171 zf-C2H2_jaz: Zinc-fin 93.3 0.037 8E-07 34.7 0.9 22 36-57 2-23 (27)
52 smart00451 ZnF_U1 U1-like zinc 92.7 0.093 2E-06 34.4 2.2 21 12-32 4-24 (35)
53 KOG1146 Homeobox protein [Gene 92.3 0.054 1.2E-06 61.9 1.0 87 13-101 1262-1354(1406)
54 COG5236 Uncharacterized conser 91.2 0.13 2.7E-06 51.5 2.1 21 77-97 222-242 (493)
55 COG5048 FOG: Zn-finger [Genera 90.5 0.087 1.9E-06 51.7 0.3 59 34-104 288-352 (467)
56 KOG3671 Actin regulatory prote 90.2 27 0.00058 37.0 17.8 19 333-351 541-559 (569)
57 PF09237 GAGA: GAGA factor; I 89.7 0.34 7.3E-06 35.6 2.7 25 8-32 20-45 (54)
58 KOG2482 Predicted C2H2-type Zn 89.5 0.18 4E-06 50.3 1.7 23 10-32 194-216 (423)
59 PF12756 zf-C2H2_2: C2H2 type 89.5 0.21 4.5E-06 39.7 1.7 37 23-59 35-74 (100)
60 KOG1924 RhoA GTPase effector D 88.6 4 8.7E-05 45.1 11.0 7 362-368 694-700 (1102)
61 PF13913 zf-C2HC_2: zinc-finge 88.5 0.29 6.3E-06 30.4 1.5 18 37-55 4-21 (25)
62 PF13909 zf-H2C2_5: C2H2-type 87.2 0.4 8.6E-06 28.9 1.5 23 76-99 1-23 (24)
63 smart00451 ZnF_U1 U1-like zinc 87.1 0.39 8.4E-06 31.4 1.6 22 35-56 3-24 (35)
64 PF09538 FYDLN_acid: Protein o 86.5 0.42 9.2E-06 40.4 1.8 34 8-48 6-39 (108)
65 COG5188 PRP9 Splicing factor 3 85.9 0.65 1.4E-05 46.7 3.1 24 9-32 236-259 (470)
66 KOG4173 Alpha-SNAP protein [In 85.6 0.24 5.2E-06 46.3 -0.1 80 14-96 82-167 (253)
67 PF13913 zf-C2HC_2: zinc-finge 85.2 0.69 1.5E-05 28.7 1.9 19 13-32 4-22 (25)
68 KOG2482 Predicted C2H2-type Zn 81.6 1.4 3.1E-05 44.1 3.4 78 24-102 128-224 (423)
69 TIGR02300 FYDLN_acid conserved 80.4 1.1 2.3E-05 39.0 1.8 38 8-52 6-43 (129)
70 KOG2186 Cell growth-regulating 80.2 0.99 2.2E-05 43.5 1.8 46 12-59 3-52 (276)
71 KOG1280 Uncharacterized conser 78.6 1.3 2.8E-05 44.5 2.0 84 9-101 6-105 (381)
72 PF06220 zf-U1: U1 zinc finger 77.1 1.7 3.7E-05 29.8 1.7 22 11-32 3-26 (38)
73 KOG2186 Cell growth-regulating 76.6 1.3 2.8E-05 42.7 1.3 20 76-96 30-49 (276)
74 PF05443 ROS_MUCR: ROS/MUCR tr 75.1 1.3 2.7E-05 38.9 0.8 27 34-63 71-97 (132)
75 PF12013 DUF3505: Protein of u 74.9 2.5 5.4E-05 35.1 2.5 30 71-100 76-109 (109)
76 COG0068 HypF Hydrogenase matur 74.3 0.79 1.7E-05 50.0 -0.8 44 14-62 126-173 (750)
77 PF02892 zf-BED: BED zinc fing 73.9 1.8 3.9E-05 30.0 1.2 24 34-57 15-42 (45)
78 PF04959 ARS2: Arsenite-resist 73.7 1.1 2.4E-05 42.3 0.1 30 33-62 75-104 (214)
79 smart00531 TFIIE Transcription 73.5 1.4 3E-05 38.9 0.7 19 34-52 98-116 (147)
80 COG4888 Uncharacterized Zn rib 73.4 0.73 1.6E-05 38.4 -1.0 15 33-47 20-34 (104)
81 COG1102 Cmk Cytidylate kinase 72.3 0.84 1.8E-05 41.6 -1.0 38 334-373 40-87 (179)
82 PTZ00303 phosphatidylinositol 71.9 2.1 4.6E-05 47.2 1.7 34 14-50 463-496 (1374)
83 PF09986 DUF2225: Uncharacteri 71.7 0.9 2E-05 42.7 -1.0 37 12-48 6-61 (214)
84 PF09986 DUF2225: Uncharacteri 70.9 1.2 2.5E-05 42.0 -0.4 55 33-88 3-61 (214)
85 COG4049 Uncharacterized protei 70.4 2.1 4.5E-05 32.1 0.9 24 9-32 14-38 (65)
86 KOG4173 Alpha-SNAP protein [In 70.4 1.4 3.1E-05 41.3 0.0 46 14-59 109-170 (253)
87 TIGR00622 ssl1 transcription f 68.9 6 0.00013 33.7 3.5 75 11-99 14-105 (112)
88 COG4957 Predicted transcriptio 68.2 2.1 4.6E-05 37.5 0.6 24 37-63 78-101 (148)
89 PRK06266 transcription initiat 67.6 3.3 7E-05 38.0 1.8 18 34-51 116-133 (178)
90 smart00614 ZnF_BED BED zinc fi 67.4 3.5 7.5E-05 29.6 1.5 19 38-56 21-44 (50)
91 KOG2785 C2H2-type Zn-finger pr 66.9 4.9 0.00011 40.9 3.0 21 12-32 166-187 (390)
92 PRK00464 nrdR transcriptional 66.8 1.4 2.9E-05 39.6 -0.9 41 13-54 2-47 (154)
93 TIGR00373 conserved hypothetic 65.2 3.6 7.8E-05 36.9 1.5 19 34-52 108-126 (158)
94 KOG2593 Transcription initiati 65.2 2.8 6.1E-05 43.3 0.9 20 33-52 126-145 (436)
95 KOG3408 U1-like Zn-finger-cont 64.5 3.1 6.6E-05 35.9 0.9 22 36-57 58-79 (129)
96 COG4049 Uncharacterized protei 63.4 2.6 5.6E-05 31.6 0.2 29 33-61 15-43 (65)
97 KOG2785 C2H2-type Zn-finger pr 63.0 7.5 0.00016 39.6 3.4 62 36-97 167-242 (390)
98 COG2331 Uncharacterized protei 62.5 3.6 7.9E-05 32.6 0.9 30 14-47 15-45 (82)
99 PF05443 ROS_MUCR: ROS/MUCR tr 61.8 3.2 7E-05 36.3 0.6 29 75-106 72-100 (132)
100 PRK04023 DNA polymerase II lar 61.3 7.6 0.00016 44.2 3.4 23 63-85 651-673 (1121)
101 PTZ00255 60S ribosomal protein 60.7 5.6 0.00012 32.6 1.7 12 33-44 34-45 (90)
102 PF09332 Mcm10: Mcm10 replicat 59.7 2.9 6.3E-05 42.2 -0.1 34 14-47 255-297 (344)
103 COG1198 PriA Primosomal protei 57.5 8.4 0.00018 42.7 3.0 21 64-84 463-484 (730)
104 PF12013 DUF3505: Protein of u 57.2 6.2 0.00013 32.8 1.5 26 35-60 80-109 (109)
105 KOG1813 Predicted E3 ubiquitin 56.6 9.8 0.00021 37.6 2.9 59 33-99 239-303 (313)
106 PF13717 zinc_ribbon_4: zinc-r 56.3 4.9 0.00011 27.1 0.6 31 14-45 5-35 (36)
107 COG1997 RPL43A Ribosomal prote 56.1 4.7 0.0001 32.8 0.6 33 33-87 33-65 (89)
108 KOG2593 Transcription initiati 55.7 5.7 0.00012 41.1 1.2 36 11-46 127-164 (436)
109 PF05191 ADK_lid: Adenylate ki 54.0 4.8 0.0001 27.3 0.2 34 12-49 2-35 (36)
110 PF01286 XPA_N: XPA protein N- 52.9 2.8 6.1E-05 28.2 -1.0 26 12-43 4-29 (34)
111 KOG4124 Putative transcription 52.6 3.5 7.7E-05 41.5 -0.8 62 33-94 347-417 (442)
112 COG3677 Transposase and inacti 52.2 4.1 8.8E-05 35.4 -0.4 38 11-50 30-68 (129)
113 KOG3214 Uncharacterized Zn rib 51.6 6.4 0.00014 32.8 0.7 7 1-7 1-7 (109)
114 KOG4124 Putative transcription 51.5 3.1 6.8E-05 41.9 -1.3 46 10-55 347-418 (442)
115 COG5112 UFD2 U1-like Zn-finger 51.4 5.6 0.00012 33.6 0.3 21 12-32 56-76 (126)
116 TIGR02098 MJ0042_CXXC MJ0042 f 51.1 5.4 0.00012 26.7 0.1 31 14-45 5-35 (38)
117 COG4530 Uncharacterized protei 50.9 11 0.00023 32.2 1.9 37 8-52 6-42 (129)
118 PF14353 CpXC: CpXC protein 49.9 7.2 0.00016 33.2 0.8 45 13-57 3-60 (128)
119 cd00350 rubredoxin_like Rubred 49.9 10 0.00022 24.9 1.3 22 14-43 4-25 (33)
120 PF14369 zf-RING_3: zinc-finge 48.4 8.9 0.00019 25.8 0.9 31 11-47 2-33 (35)
121 PF13719 zinc_ribbon_5: zinc-r 48.3 8.6 0.00019 26.0 0.8 31 14-45 5-35 (37)
122 PRK14873 primosome assembly pr 48.1 13 0.00029 40.7 2.7 22 63-84 410-431 (665)
123 COG1997 RPL43A Ribosomal prote 47.7 11 0.00023 30.8 1.4 32 11-50 35-68 (89)
124 COG1571 Predicted DNA-binding 46.9 10 0.00022 39.3 1.5 33 10-49 349-381 (421)
125 KOG4577 Transcription factor L 45.7 8.9 0.00019 37.8 0.8 42 10-51 32-81 (383)
126 PRK00464 nrdR transcriptional 45.7 6.3 0.00014 35.4 -0.2 15 76-90 29-43 (154)
127 PRK06266 transcription initiat 45.6 8.5 0.00018 35.2 0.6 33 11-48 116-149 (178)
128 PRK00398 rpoP DNA-directed RNA 45.5 6.6 0.00014 27.6 -0.1 27 14-46 6-32 (46)
129 PRK14892 putative transcriptio 44.2 10 0.00022 31.7 0.7 11 37-47 44-54 (99)
130 KOG2932 E3 ubiquitin ligase in 44.2 3.5E+02 0.0077 27.3 13.0 18 80-97 152-169 (389)
131 KOG3671 Actin regulatory prote 44.0 4.4E+02 0.0095 28.3 14.4 8 350-357 506-513 (569)
132 TIGR00373 conserved hypothetic 43.7 11 0.00023 33.9 0.9 33 11-48 108-141 (158)
133 PRK03976 rpl37ae 50S ribosomal 42.7 14 0.00031 30.3 1.4 12 33-44 34-45 (90)
134 PRK09678 DNA-binding transcrip 42.5 6.8 0.00015 30.8 -0.5 17 33-49 25-43 (72)
135 KOG1280 Uncharacterized conser 42.0 9.4 0.0002 38.5 0.3 31 33-63 77-107 (381)
136 smart00531 TFIIE Transcription 42.0 12 0.00026 32.9 1.0 37 11-48 98-136 (147)
137 COG1996 RPC10 DNA-directed RNA 41.7 12 0.00026 27.3 0.8 25 14-44 9-33 (49)
138 PF04216 FdhE: Protein involve 41.3 9.1 0.0002 37.4 0.1 14 34-47 210-223 (290)
139 PF04959 ARS2: Arsenite-resist 41.3 17 0.00036 34.4 1.8 23 10-32 76-98 (214)
140 PF10571 UPF0547: Uncharacteri 41.3 15 0.00033 23.1 1.1 10 37-46 16-25 (26)
141 PHA00626 hypothetical protein 41.0 8.3 0.00018 28.9 -0.2 13 35-47 23-35 (59)
142 COG5151 SSL1 RNA polymerase II 40.7 16 0.00034 36.5 1.6 24 76-99 389-412 (421)
143 KOG2932 E3 ubiquitin ligase in 40.6 4E+02 0.0087 26.9 17.6 12 9-20 87-99 (389)
144 PF01155 HypA: Hydrogenase exp 39.6 12 0.00026 31.6 0.6 25 12-44 71-95 (113)
145 KOG4215 Hepatocyte nuclear fac 39.0 9.5 0.00021 38.9 -0.2 17 38-55 39-55 (432)
146 cd00729 rubredoxin_SM Rubredox 39.0 15 0.00033 24.4 0.9 22 14-43 5-26 (34)
147 cd00065 FYVE FYVE domain; Zinc 38.8 19 0.0004 25.9 1.4 28 14-49 5-32 (57)
148 KOG0717 Molecular chaperone (D 37.8 18 0.00038 38.0 1.5 24 9-32 290-313 (508)
149 KOG0978 E3 ubiquitin ligase in 36.6 15 0.00032 40.5 0.8 19 76-94 679-697 (698)
150 smart00659 RPOLCX RNA polymera 36.4 18 0.00039 25.6 0.9 24 14-44 5-28 (44)
151 KOG4727 U1-like Zn-finger prot 35.9 18 0.00039 33.1 1.1 23 12-34 76-98 (193)
152 PF01363 FYVE: FYVE zinc finge 35.8 12 0.00026 28.2 -0.0 31 12-50 10-40 (69)
153 PF04573 SPC22: Signal peptida 35.7 27 0.00058 32.0 2.2 36 318-354 99-138 (175)
154 smart00064 FYVE Protein presen 35.6 21 0.00046 26.7 1.3 28 13-48 12-39 (68)
155 KOG0782 Predicted diacylglycer 35.5 8.5 0.00018 41.3 -1.2 33 317-349 453-497 (1004)
156 PF13878 zf-C2H2_3: zinc-finge 35.3 30 0.00065 24.0 1.9 24 76-99 14-39 (41)
157 KOG4849 mRNA cleavage factor I 35.3 5.2E+02 0.011 26.6 16.1 22 9-30 78-100 (498)
158 PRK03564 formate dehydrogenase 35.0 19 0.00042 35.9 1.3 10 11-20 187-196 (309)
159 PF03604 DNA_RNApol_7kD: DNA d 35.0 24 0.00052 23.3 1.3 24 14-44 3-26 (32)
160 COG3357 Predicted transcriptio 34.9 15 0.00033 30.2 0.4 15 33-47 56-70 (97)
161 PF09723 Zn-ribbon_8: Zinc rib 34.5 8.3 0.00018 26.8 -1.0 12 36-47 6-17 (42)
162 TIGR00622 ssl1 transcription f 34.2 20 0.00044 30.5 1.1 46 13-58 57-104 (112)
163 PRK03824 hypA hydrogenase nick 34.0 16 0.00036 31.8 0.5 10 14-23 73-82 (135)
164 KOG1701 Focal adhesion adaptor 32.9 12 0.00026 38.8 -0.6 12 75-86 427-438 (468)
165 COG4957 Predicted transcriptio 32.7 32 0.00068 30.4 2.0 21 9-32 73-94 (148)
166 COG1198 PriA Primosomal protei 32.2 19 0.00041 40.0 0.8 43 14-71 438-483 (730)
167 PRK12380 hydrogenase nickel in 31.5 20 0.00044 30.3 0.7 10 13-22 72-81 (113)
168 TIGR00280 L37a ribosomal prote 31.5 16 0.00034 30.1 -0.0 12 33-44 33-44 (91)
169 smart00734 ZnF_Rad18 Rad18-lik 31.4 39 0.00084 21.1 1.8 18 14-32 4-21 (26)
170 KOG4215 Hepatocyte nuclear fac 31.3 8.7 0.00019 39.1 -1.8 39 14-53 39-89 (432)
171 PF06524 NOA36: NOA36 protein; 31.1 25 0.00054 34.4 1.2 82 8-99 138-233 (314)
172 PF02176 zf-TRAF: TRAF-type zi 30.4 19 0.00042 26.1 0.3 33 14-47 12-54 (60)
173 KOG4849 mRNA cleavage factor I 30.3 6.2E+02 0.013 26.0 12.1 16 301-316 327-342 (498)
174 PF10537 WAC_Acf1_DNA_bd: ATP- 30.2 47 0.001 27.7 2.6 42 12-53 4-49 (102)
175 PF15269 zf-C2H2_7: Zinc-finge 29.7 29 0.00064 24.9 1.1 21 36-56 21-41 (54)
176 KOG1802 RNA helicase nonsense 29.7 36 0.00077 37.6 2.3 13 36-48 75-87 (935)
177 KOG3815 Transcription factor D 29.2 21 0.00045 35.6 0.4 43 9-52 34-79 (322)
178 KOG2807 RNA polymerase II tran 28.9 73 0.0016 32.1 4.1 77 12-99 277-369 (378)
179 PF13240 zinc_ribbon_2: zinc-r 28.8 28 0.0006 21.2 0.8 8 14-21 2-9 (23)
180 KOG4477 RING1 interactor RYBP 28.7 27 0.00058 32.4 1.0 26 9-44 21-47 (228)
181 TIGR01562 FdhE formate dehydro 28.5 50 0.0011 32.9 2.9 10 11-20 184-193 (305)
182 PF13821 DUF4187: Domain of un 28.5 38 0.00082 25.1 1.6 29 26-54 18-46 (55)
183 TIGR00595 priA primosomal prot 28.2 40 0.00086 35.8 2.3 52 6-82 207-260 (505)
184 PRK04860 hypothetical protein; 27.9 39 0.00085 30.4 1.9 32 75-110 119-150 (160)
185 COG1592 Rubrerythrin [Energy p 27.7 37 0.00081 30.9 1.7 10 35-44 134-143 (166)
186 PRK13659 hypothetical protein; 27.7 23 0.0005 29.6 0.4 33 327-362 28-72 (103)
187 PF07754 DUF1610: Domain of un 27.6 35 0.00075 21.2 1.0 8 35-42 16-23 (24)
188 TIGR00143 hypF [NiFe] hydrogen 27.6 15 0.00032 40.7 -1.0 12 320-331 373-384 (711)
189 PF05301 Mec-17: Touch recepto 27.6 51 0.0011 28.5 2.4 9 322-330 6-14 (120)
190 COG2888 Predicted Zn-ribbon RN 27.5 45 0.00098 25.3 1.9 32 12-49 10-41 (61)
191 PF07282 OrfB_Zn_ribbon: Putat 27.3 31 0.00067 26.0 1.0 15 33-47 44-58 (69)
192 PF07975 C1_4: TFIIH C1-like d 27.2 18 0.00039 26.6 -0.3 43 14-58 2-44 (51)
193 PF08972 DUF1902: Domain of un 27.2 38 0.00082 25.2 1.3 9 322-330 3-11 (54)
194 KOG4167 Predicted DNA-binding 26.8 14 0.00031 40.7 -1.3 24 36-59 793-816 (907)
195 TIGR01206 lysW lysine biosynth 26.5 20 0.00042 26.6 -0.3 12 36-47 3-14 (54)
196 PF02146 SIR2: Sir2 family; I 26.5 44 0.00095 29.9 2.0 29 14-43 108-137 (178)
197 KOG1729 FYVE finger containing 26.1 27 0.00058 34.6 0.5 28 13-47 170-197 (288)
198 PRK14890 putative Zn-ribbon RN 26.1 45 0.00098 25.2 1.6 27 12-44 8-34 (59)
199 PF01780 Ribosomal_L37ae: Ribo 25.8 17 0.00038 29.8 -0.7 12 33-44 33-44 (90)
200 TIGR00100 hypA hydrogenase nic 25.6 30 0.00066 29.3 0.7 12 36-47 71-82 (115)
201 PF05290 Baculo_IE-1: Baculovi 25.5 25 0.00054 30.9 0.2 12 77-88 123-134 (140)
202 KOG3454 U1 snRNP-specific prot 25.3 30 0.00066 31.4 0.7 9 11-19 3-11 (165)
203 KOG4167 Predicted DNA-binding 25.0 15 0.00033 40.4 -1.4 27 76-102 793-819 (907)
204 PF08790 zf-LYAR: LYAR-type C2 24.8 23 0.0005 22.8 -0.1 19 36-55 1-19 (28)
205 KOG0132 RNA polymerase II C-te 24.5 1E+03 0.023 27.0 12.1 11 82-92 510-520 (894)
206 COG0078 ArgF Ornithine carbamo 24.5 40 0.00088 33.6 1.5 31 322-352 222-259 (310)
207 KOG3408 U1-like Zn-finger-cont 24.5 43 0.00094 29.0 1.4 28 70-97 52-79 (129)
208 PRK00564 hypA hydrogenase nick 24.3 33 0.00071 29.2 0.7 9 14-22 74-82 (117)
209 PF07535 zf-DBF: DBF zinc fing 24.3 32 0.0007 25.0 0.5 18 12-32 6-23 (49)
210 COG5152 Uncharacterized conser 24.1 19 0.00041 33.8 -0.8 55 33-95 194-254 (259)
211 PRK00432 30S ribosomal protein 23.7 41 0.00088 24.4 1.0 12 34-45 36-47 (50)
212 PF09416 UPF1_Zn_bind: RNA hel 23.3 45 0.00096 30.0 1.3 19 14-32 17-41 (152)
213 smart00132 LIM Zinc-binding do 23.3 31 0.00068 22.1 0.3 10 76-85 28-37 (39)
214 KOG2071 mRNA cleavage and poly 23.3 45 0.00098 36.0 1.6 26 33-58 416-441 (579)
215 PRK03681 hypA hydrogenase nick 23.2 39 0.00085 28.6 1.0 9 13-21 72-80 (114)
216 PHA03247 large tegument protei 23.0 1.8E+03 0.04 29.1 21.6 7 41-47 2470-2476(3151)
217 PF00301 Rubredoxin: Rubredoxi 23.0 21 0.00046 25.7 -0.6 13 36-48 2-14 (47)
218 KOG3816 Cell differentiation r 22.7 43 0.00092 34.5 1.2 20 35-54 474-493 (526)
219 PRK11823 DNA repair protein Ra 22.3 57 0.0012 34.0 2.1 22 12-43 8-29 (446)
220 KOG2636 Splicing factor 3a, su 22.3 62 0.0013 33.9 2.3 35 33-67 399-437 (497)
221 COG3364 Zn-ribbon containing p 21.8 52 0.0011 27.7 1.4 10 14-23 5-14 (112)
222 smart00154 ZnF_AN1 AN1-like Zi 21.4 40 0.00087 23.1 0.6 15 35-49 12-26 (39)
223 cd00730 rubredoxin Rubredoxin; 21.3 33 0.00072 25.0 0.1 12 36-47 2-13 (50)
224 smart00834 CxxC_CXXC_SSSS Puta 21.3 36 0.00079 22.7 0.3 16 35-50 5-20 (41)
225 PF04780 DUF629: Protein of un 21.2 51 0.0011 34.8 1.5 27 36-62 58-84 (466)
226 COG5222 Uncharacterized conser 21.2 2.6E+02 0.0057 28.0 6.2 8 41-48 293-300 (427)
227 cd01410 SIRT7 SIRT7: Eukaryoti 21.0 94 0.002 28.9 3.1 10 14-23 98-107 (206)
228 TIGR00244 transcriptional regu 20.8 47 0.001 29.6 1.0 19 72-90 25-43 (147)
229 COG1066 Sms Predicted ATP-depe 20.7 51 0.0011 34.5 1.3 28 1-42 1-28 (456)
230 PF04780 DUF629: Protein of un 20.5 59 0.0013 34.3 1.8 22 11-32 56-78 (466)
231 PRK05654 acetyl-CoA carboxylas 20.1 1.3E+02 0.0027 29.9 3.9 32 14-50 30-61 (292)
232 KOG1044 Actin-binding LIM Zn-f 20.1 27 0.00059 37.6 -0.7 39 12-51 17-58 (670)
233 KOG3799 Rab3 effector RIM1 and 20.0 24 0.00053 31.1 -0.9 31 9-48 63-94 (169)
No 1
>KOG2893 consensus Zn finger protein [General function prediction only]
Probab=99.94 E-value=1e-25 Score=208.77 Aligned_cols=149 Identities=46% Similarity=0.837 Sum_probs=110.5
Q ss_pred CCCCCCCCCCccccCcCCCcccChHHHHHHhhcCccccccCccccCCchhhHHHHhhhccCccccCCCCCCCCCcccccc
Q 017258 1 MGKKKKRVSSKVWCYYCDREFDDEKILVQHQKAKHFKCHVCHKKLSTAGGMAIHVLQVHKENVTKVPNAKPGRESTDIEI 80 (374)
Q Consensus 1 mgkKk~~~gEKp~C~~CgK~Fs~~s~Lk~H~ReKPfkC~~CgK~Fs~~s~L~rH~r~hH~ekp~~cp~~kpgr~~~~C~i 80 (374)
|||||++ ..|+||-+|++.|.+...|.+|++.|.|||++|.|++.+--.|..|..++|.|..-+++++..+|+....+|
T Consensus 1 mgrkkkk-~~kpwcwycnrefddekiliqhqkakhfkchichkkl~sgpglsihcmqvhketid~ip~av~gr~~i~vei 79 (341)
T KOG2893|consen 1 MGRKKKK-VDKPWCWYCNREFDDEKILIQHQKAKHFKCHICHKKLFSGPGLSIHCMQVHKETIDKIPAAVHGRDNIHVEI 79 (341)
T ss_pred CCccccc-cCCceeeecccccchhhhhhhhhhhccceeeeehhhhccCCCceeehhhhhhhhhhcccccccCCcceeEEE
Confidence 8999999 789999999999999999999999999999999999999999999999999998888899999999999999
Q ss_pred cCCCCCCHHHHHHHHhhhcCCCcccccccccCCCCccCCCCCCCCCCCCCCCC--CCCCCCCCCCCCCCCCCCCCCC
Q 017258 81 YGMQGIPPDVLAAHYGEEEEEVPSKMAKVDTSFPQLVGGVVPGQLGVSYPPQS--TLGMMQPIYSSAVPVPPAGWPV 155 (374)
Q Consensus 81 CgK~F~~~s~L~~H~rth~ge~~~k~~k~~~~~~~~~~~~~p~~~g~~~pP~p--~~~~~~P~~~p~~p~pp~~~~~ 155 (374)
+|+..+....++.-. +.+.+.|+.+++..+.-. ..++.....++++.+ ..+..+|++...+++.+++..+
T Consensus 80 ygmqgip~~~~r~~~---de~~~ekr~~~d~~~~~~--~~~p~~~~~~f~~~p~~p~g~~pp~~~~gmpp~p~~~~~ 151 (341)
T KOG2893|consen 80 YGMQGIPSGAYRGAA---DEEPDEKRSRMDNGPPMP--TPMPFPQHFPFPGMPPMPSGPPPPSMAYGMPPMPSGMMP 151 (341)
T ss_pred eeccCCCchhhhhhh---hcCchhhhhcccCCCCCC--CCCCCcccCCCCCCCCCCCCCCCcccccCCCCCCCCCCC
Confidence 999999987655443 233334555555444321 122222222222222 1244466777777766666433
No 2
>KOG2462 consensus C2H2-type Zn-finger protein [Transcription]
Probab=99.65 E-value=8.8e-17 Score=152.62 Aligned_cols=86 Identities=19% Similarity=0.275 Sum_probs=77.1
Q ss_pred ccc-cCcCCCcccChHHHHHHhh--cCccccccCccccCCchhhHHHHhhhccCccccCCCCCCCCCcccccccCCCCCC
Q 017258 11 KVW-CYYCDREFDDEKILVQHQK--AKHFKCHVCHKKLSTAGGMAIHVLQVHKENVTKVPNAKPGRESTDIEIYGMQGIP 87 (374)
Q Consensus 11 Kp~-C~~CgK~Fs~~s~Lk~H~R--eKPfkC~~CgK~Fs~~s~L~rH~r~hH~ekp~~cp~~kpgr~~~~C~iCgK~F~~ 87 (374)
|-+ |.+|||+|...-.|+.|+| .-+++|.+|||+|.|...|+.|+|+|+|||+ |.|..|+|.|.+
T Consensus 160 ka~~C~~C~K~YvSmpALkMHirTH~l~c~C~iCGKaFSRPWLLQGHiRTHTGEKP------------F~C~hC~kAFAD 227 (279)
T KOG2462|consen 160 KAFSCKYCGKVYVSMPALKMHIRTHTLPCECGICGKAFSRPWLLQGHIRTHTGEKP------------FSCPHCGKAFAD 227 (279)
T ss_pred ccccCCCCCceeeehHHHhhHhhccCCCcccccccccccchHHhhcccccccCCCC------------ccCCcccchhcc
Confidence 445 9999999999999999999 5599999999999999999999999999998 888899999999
Q ss_pred HHHHHHHHhhhcCCCcccccc
Q 017258 88 PDVLAAHYGEEEEEVPSKMAK 108 (374)
Q Consensus 88 ~s~L~~H~rth~ge~~~k~~k 108 (374)
+++|+.|+++|.+.+.++..+
T Consensus 228 RSNLRAHmQTHS~~K~~qC~~ 248 (279)
T KOG2462|consen 228 RSNLRAHMQTHSDVKKHQCPR 248 (279)
T ss_pred hHHHHHHHHhhcCCccccCcc
Confidence 999999999999887766543
No 3
>KOG2462 consensus C2H2-type Zn-finger protein [Transcription]
Probab=99.55 E-value=1.4e-15 Score=144.39 Aligned_cols=74 Identities=19% Similarity=0.302 Sum_probs=69.6
Q ss_pred cccCcCCCcccChHHHHHHhh----cCccccccCccccCCchhhHHHHhhhccCccccCCCCCCCCCcccccccCCCCCC
Q 017258 12 VWCYYCDREFDDEKILVQHQK----AKHFKCHVCHKKLSTAGGMAIHVLQVHKENVTKVPNAKPGRESTDIEIYGMQGIP 87 (374)
Q Consensus 12 p~C~~CgK~Fs~~s~Lk~H~R----eKPfkC~~CgK~Fs~~s~L~rH~r~hH~ekp~~cp~~kpgr~~~~C~iCgK~F~~ 87 (374)
..|.+|||+|++..-|+-|+| ||||.|.+|+|+|.++++|+-|+++|.+.|. |+|..|+|.|..
T Consensus 188 c~C~iCGKaFSRPWLLQGHiRTHTGEKPF~C~hC~kAFADRSNLRAHmQTHS~~K~------------~qC~~C~KsFsl 255 (279)
T KOG2462|consen 188 CECGICGKAFSRPWLLQGHIRTHTGEKPFSCPHCGKAFADRSNLRAHMQTHSDVKK------------HQCPRCGKSFAL 255 (279)
T ss_pred cccccccccccchHHhhcccccccCCCCccCCcccchhcchHHHHHHHHhhcCCcc------------ccCcchhhHHHH
Confidence 339999999999999999999 9999999999999999999999999988876 999999999999
Q ss_pred HHHHHHHHhh
Q 017258 88 PDVLAAHYGE 97 (374)
Q Consensus 88 ~s~L~~H~rt 97 (374)
.+.|.+|...
T Consensus 256 ~SyLnKH~ES 265 (279)
T KOG2462|consen 256 KSYLNKHSES 265 (279)
T ss_pred HHHHHHhhhh
Confidence 9999999754
No 4
>KOG3623 consensus Homeobox transcription factor SIP1 [Transcription]
Probab=99.35 E-value=1.7e-13 Score=143.14 Aligned_cols=79 Identities=15% Similarity=0.336 Sum_probs=72.6
Q ss_pred CCCCCccc-cCcCCCcccChHHHHHHhh----cCccccccCccccCCchhhHHHHhhhccCccccCCCCCCCCCcccccc
Q 017258 6 KRVSSKVW-CYYCDREFDDEKILVQHQK----AKHFKCHVCHKKLSTAGGMAIHVLQVHKENVTKVPNAKPGRESTDIEI 80 (374)
Q Consensus 6 ~~~gEKp~-C~~CgK~Fs~~s~Lk~H~R----eKPfkC~~CgK~Fs~~s~L~rH~r~hH~ekp~~cp~~kpgr~~~~C~i 80 (374)
++..+-.| |+.|+|+|...+.|.||.- .|||+|.+|.|+|+.+.+|..|.|.|.|||+ |.|+.
T Consensus 888 ~kte~gmyaCDqCDK~FqKqSSLaRHKYEHsGqRPyqC~iCkKAFKHKHHLtEHkRLHSGEKP------------fQCdK 955 (1007)
T KOG3623|consen 888 AKTEDGMYACDQCDKAFQKQSSLARHKYEHSGQRPYQCIICKKAFKHKHHLTEHKRLHSGEKP------------FQCDK 955 (1007)
T ss_pred ccCccccchHHHHHHHHHhhHHHHHhhhhhcCCCCcccchhhHhhhhhhhhhhhhhhccCCCc------------chhhh
Confidence 33344566 9999999999999999987 8999999999999999999999999999998 99999
Q ss_pred cCCCCCCHHHHHHHHh
Q 017258 81 YGMQGIPPDVLAAHYG 96 (374)
Q Consensus 81 CgK~F~~~s~L~~H~r 96 (374)
|+|+|.+...+.+||.
T Consensus 956 ClKRFSHSGSYSQHMN 971 (1007)
T KOG3623|consen 956 CLKRFSHSGSYSQHMN 971 (1007)
T ss_pred hhhhcccccchHhhhc
Confidence 9999999999999985
No 5
>KOG3576 consensus Ovo and related transcription factors [Transcription]
Probab=99.29 E-value=6.1e-13 Score=121.68 Aligned_cols=81 Identities=16% Similarity=0.234 Sum_probs=70.3
Q ss_pred CCccccCcCCCcccChHHHHHHhh----cCccccccCccccCCchhhHHHHhhhccCccccCCCCCCCCCcccccccCCC
Q 017258 9 SSKVWCYYCDREFDDEKILVQHQK----AKHFKCHVCHKKLSTAGGMAIHVLQVHKENVTKVPNAKPGRESTDIEIYGMQ 84 (374)
Q Consensus 9 gEKp~C~~CgK~Fs~~s~Lk~H~R----eKPfkC~~CgK~Fs~~s~L~rH~r~hH~ekp~~cp~~kpgr~~~~C~iCgK~ 84 (374)
+.++.|.+|+|.|..-..|.+|++ .|.|.|..|||.|...-+|+||.|+|+|.++ |+|+.|+|.
T Consensus 115 ~d~ftCrvCgK~F~lQRmlnrh~kch~~vkr~lct~cgkgfndtfdlkrh~rthtgvrp------------ykc~~c~ka 182 (267)
T KOG3576|consen 115 QDSFTCRVCGKKFGLQRMLNRHLKCHSDVKRHLCTFCGKGFNDTFDLKRHTRTHTGVRP------------YKCSLCEKA 182 (267)
T ss_pred CCeeeeehhhhhhhHHHHHHHHhhhccHHHHHHHhhccCcccchhhhhhhhccccCccc------------cchhhhhHH
Confidence 344559999999999999999999 7889999999999999999999999999887 888888888
Q ss_pred CCCHHHHHHHHhhhcCC
Q 017258 85 GIPPDVLAAHYGEEEEE 101 (374)
Q Consensus 85 F~~~s~L~~H~rth~ge 101 (374)
|.++..|+.|.+.-++.
T Consensus 183 ftqrcsleshl~kvhgv 199 (267)
T KOG3576|consen 183 FTQRCSLESHLKKVHGV 199 (267)
T ss_pred HHhhccHHHHHHHHcCc
Confidence 88888888888765553
No 6
>KOG3576 consensus Ovo and related transcription factors [Transcription]
Probab=99.13 E-value=1.5e-11 Score=112.61 Aligned_cols=87 Identities=23% Similarity=0.391 Sum_probs=74.0
Q ss_pred cccCcCCCcccChHHHHHHhh----cCccccccCccccCCchhhHHHHhhhccCcc---ccCCCCCCCCCcccccccCCC
Q 017258 12 VWCYYCDREFDDEKILVQHQK----AKHFKCHVCHKKLSTAGGMAIHVLQVHKENV---TKVPNAKPGRESTDIEIYGMQ 84 (374)
Q Consensus 12 p~C~~CgK~Fs~~s~Lk~H~R----eKPfkC~~CgK~Fs~~s~L~rH~r~hH~ekp---~~cp~~kpgr~~~~C~iCgK~ 84 (374)
+.|.+|||.|.+-.+|++|+| .|||+|..|+|.|.++-.|..|.+.+|+... |+.... +-|.|+.||..
T Consensus 146 ~lct~cgkgfndtfdlkrh~rthtgvrpykc~~c~kaftqrcsleshl~kvhgv~~~yaykerr~----kl~vcedcg~t 221 (267)
T KOG3576|consen 146 HLCTFCGKGFNDTFDLKRHTRTHTGVRPYKCSLCEKAFTQRCSLESHLKKVHGVQHQYAYKERRA----KLYVCEDCGYT 221 (267)
T ss_pred HHHhhccCcccchhhhhhhhccccCccccchhhhhHHHHhhccHHHHHHHHcCchHHHHHHHhhh----heeeecccCCC
Confidence 349999999999999999999 8999999999999999999999999998642 222212 33999999999
Q ss_pred CCCHHHHHHHHhhhcCCC
Q 017258 85 GIPPDVLAAHYGEEEEEV 102 (374)
Q Consensus 85 F~~~s~L~~H~rth~ge~ 102 (374)
-...+.+..|++.|+-..
T Consensus 222 ~~~~e~~~~h~~~~hp~S 239 (267)
T KOG3576|consen 222 SERPEVYYLHLKLHHPFS 239 (267)
T ss_pred CCChhHHHHHHHhcCCCC
Confidence 999999999999876554
No 7
>KOG3623 consensus Homeobox transcription factor SIP1 [Transcription]
Probab=99.03 E-value=6.3e-11 Score=124.31 Aligned_cols=72 Identities=18% Similarity=0.275 Sum_probs=60.9
Q ss_pred ccCcCCCcccChHHHHHHhh-----------------cCccccccCccccCCchhhHHHHhhhccCccccCCCCCCCCCc
Q 017258 13 WCYYCDREFDDEKILVQHQK-----------------AKHFKCHVCHKKLSTAGGMAIHVLQVHKENVTKVPNAKPGRES 75 (374)
Q Consensus 13 ~C~~CgK~Fs~~s~Lk~H~R-----------------eKPfkC~~CgK~Fs~~s~L~rH~r~hH~ekp~~cp~~kpgr~~ 75 (374)
-|-.|..+|..+..|.+|+. -|.|||..|||+|+.+.+|+.|+|+|.|||+
T Consensus 242 sC~lCsytFAyRtQLErhm~~hkpg~dqa~sltqsa~lRKFKCtECgKAFKfKHHLKEHlRIHSGEKP------------ 309 (1007)
T KOG3623|consen 242 SCMLCSYTFAYRTQLERHMQLHKPGGDQAISLTQSALLRKFKCTECGKAFKFKHHLKEHLRIHSGEKP------------ 309 (1007)
T ss_pred cchhhhhhhhhHHHHHHHHHhhcCCCcccccccchhhhccccccccchhhhhHHHHHhhheeecCCCC------------
Confidence 38888888888888888876 5788898899999988889999888888887
Q ss_pred ccccccCCCCCCHHHHHHHHh
Q 017258 76 TDIEIYGMQGIPPDVLAAHYG 96 (374)
Q Consensus 76 ~~C~iCgK~F~~~s~L~~H~r 96 (374)
|+|..|+|+|.+...+..|+-
T Consensus 310 feCpnCkKRFSHSGSySSHmS 330 (1007)
T KOG3623|consen 310 FECPNCKKRFSHSGSYSSHMS 330 (1007)
T ss_pred cCCcccccccccCCccccccc
Confidence 778888888888888888864
No 8
>KOG1074 consensus Transcriptional repressor SALM [Transcription]
Probab=98.83 E-value=9.4e-10 Score=117.28 Aligned_cols=83 Identities=24% Similarity=0.386 Sum_probs=72.2
Q ss_pred cc-cCcCCCcccChHHHHHHhh----cCccccccCccccCCchhhHHHHhhhccCccccCCCCCCCCCccccc---ccCC
Q 017258 12 VW-CYYCDREFDDEKILVQHQK----AKHFKCHVCHKKLSTAGGMAIHVLQVHKENVTKVPNAKPGRESTDIE---IYGM 83 (374)
Q Consensus 12 p~-C~~CgK~Fs~~s~Lk~H~R----eKPfkC~~CgK~Fs~~s~L~rH~r~hH~ekp~~cp~~kpgr~~~~C~---iCgK 83 (374)
+. |-+|.|+.+..+.|+.|+| ||||||.+||++|.++++|+.|+ .+|.-++ +.|-.|.|. +|.+
T Consensus 605 PNqCiiC~rVlSC~saLqmHyrtHtGERPFkCKiCgRAFtTkGNLkaH~-~vHka~p-------~~R~q~ScP~~~ic~~ 676 (958)
T KOG1074|consen 605 PNQCIICLRVLSCPSALQMHYRTHTGERPFKCKICGRAFTTKGNLKAHM-SVHKAKP-------PARVQFSCPSTFICQK 676 (958)
T ss_pred ccceeeeeecccchhhhhhhhhcccCcCccccccccchhccccchhhcc-cccccCc-------cccccccCCchhhhcc
Confidence 44 9999999999999999999 99999999999999999999999 4554442 334448898 9999
Q ss_pred CCCCHHHHHHHHhhhcCCC
Q 017258 84 QGIPPDVLAAHYGEEEEEV 102 (374)
Q Consensus 84 ~F~~~s~L~~H~rth~ge~ 102 (374)
.|...-.|.+|.|+|.+..
T Consensus 677 kftn~V~lpQhIriH~~~~ 695 (958)
T KOG1074|consen 677 KFTNAVTLPQHIRIHLGGQ 695 (958)
T ss_pred cccccccccceEEeecCCC
Confidence 9999999999999998654
No 9
>PHA00733 hypothetical protein
Probab=98.80 E-value=3.8e-09 Score=91.53 Aligned_cols=75 Identities=12% Similarity=0.167 Sum_probs=63.3
Q ss_pred cccCcCCCcccChHHHHHH------hh---cCccccccCccccCCchhhHHHHhhhccCccccCCCCCCCCCcccccccC
Q 017258 12 VWCYYCDREFDDEKILVQH------QK---AKHFKCHVCHKKLSTAGGMAIHVLQVHKENVTKVPNAKPGRESTDIEIYG 82 (374)
Q Consensus 12 p~C~~CgK~Fs~~s~Lk~H------~R---eKPfkC~~CgK~Fs~~s~L~rH~r~hH~ekp~~cp~~kpgr~~~~C~iCg 82 (374)
..|.+|.+.|.....|..| +. +++|+|..|++.|.+...|.+|++.+ +.. |.|.+|+
T Consensus 41 ~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~kPy~C~~Cgk~Fss~s~L~~H~r~h--~~~------------~~C~~Cg 106 (128)
T PHA00733 41 LIRAVVKTLIYNPQLLDESSYLYKLLTSKAVSPYVCPLCLMPFSSSVSLKQHIRYT--EHS------------KVCPVCG 106 (128)
T ss_pred HHHHHHhhhccChhhhcchHHHHhhcccCCCCCccCCCCCCcCCCHHHHHHHHhcC--CcC------------ccCCCCC
Confidence 3499999999887777665 22 78999999999999999999999764 222 8999999
Q ss_pred CCCCCHHHHHHHHhhhcC
Q 017258 83 MQGIPPDVLAAHYGEEEE 100 (374)
Q Consensus 83 K~F~~~s~L~~H~rth~g 100 (374)
+.|.....|.+|++..++
T Consensus 107 K~F~~~~sL~~H~~~~h~ 124 (128)
T PHA00733 107 KEFRNTDSTLDHVCKKHN 124 (128)
T ss_pred CccCCHHHHHHHHHHhcC
Confidence 999999999999987665
No 10
>KOG1074 consensus Transcriptional repressor SALM [Transcription]
Probab=98.75 E-value=2.7e-09 Score=113.81 Aligned_cols=77 Identities=23% Similarity=0.434 Sum_probs=61.4
Q ss_pred CCccccCcCCCcccChHHHHHHhh----cCccccccCccccCCchhhHHHHhhhccCccccCCCCCCCCCcccccccCCC
Q 017258 9 SSKVWCYYCDREFDDEKILVQHQK----AKHFKCHVCHKKLSTAGGMAIHVLQVHKENVTKVPNAKPGRESTDIEIYGMQ 84 (374)
Q Consensus 9 gEKp~C~~CgK~Fs~~s~Lk~H~R----eKPfkC~~CgK~Fs~~s~L~rH~r~hH~ekp~~cp~~kpgr~~~~C~iCgK~ 84 (374)
..|..|.+|.|.|...+.|++|.| ||||+|.+||.+|+++++|+.|...|+...++.--+.+++..-+.|++|--.
T Consensus 351 ~~khkCr~CakvfgS~SaLqiHlRSHTGERPfqCnvCG~~FSTkGNLKvH~~rH~e~~p~~~m~p~~~~e~l~~~i~st~ 430 (958)
T KOG1074|consen 351 FFKHKCRFCAKVFGSDSALQIHLRSHTGERPFQCNVCGNRFSTKGNLKVHFQRHREKYPHVQMNPHPVQEHLQYVITSTG 430 (958)
T ss_pred cccchhhhhHhhcCchhhhhhhhhccCCCCCeeecccccccccccceeeeeeeccccCCccccCCCCchhhhcceeeccc
Confidence 345569999999999999999999 9999999999999999999999977766554433344555555677777544
Q ss_pred C
Q 017258 85 G 85 (374)
Q Consensus 85 F 85 (374)
|
T Consensus 431 ~ 431 (958)
T KOG1074|consen 431 L 431 (958)
T ss_pred c
Confidence 4
No 11
>KOG3608 consensus Zn finger proteins [General function prediction only]
Probab=98.57 E-value=6.7e-08 Score=95.07 Aligned_cols=87 Identities=22% Similarity=0.306 Sum_probs=70.7
Q ss_pred cCcCCCcccChHHHHHHhh-----cCccccccCccccCCchhhHHHHhhhccCccccCCC--C-----------------
Q 017258 14 CYYCDREFDDEKILVQHQK-----AKHFKCHVCHKKLSTAGGMAIHVLQVHKENVTKVPN--A----------------- 69 (374)
Q Consensus 14 C~~CgK~Fs~~s~Lk~H~R-----eKPfkC~~CgK~Fs~~s~L~rH~r~hH~ekp~~cp~--~----------------- 69 (374)
|..|+......+.|.+|+| .|+|||+.|+++|.+.+.|.+|.. .|.+..|.|.. |
T Consensus 266 CplCdmtc~~~ssL~~H~r~rHs~dkpfKCd~Cd~~c~~esdL~kH~~-~HS~~~y~C~h~~C~~s~r~~~q~~~H~~ev 344 (467)
T KOG3608|consen 266 CPLCDMTCSSASSLTTHIRYRHSKDKPFKCDECDTRCVRESDLAKHVQ-VHSKTVYQCEHPDCHYSVRTYTQMRRHFLEV 344 (467)
T ss_pred ccccccCCCChHHHHHHHHhhhccCCCccccchhhhhccHHHHHHHHH-hccccceecCCCCCcHHHHHHHHHHHHHHHh
Confidence 7788888888888888888 899999999999999999999995 66677788864 3
Q ss_pred CC--CCCcccccccCCCCCCHHHHHHHHhhhcCC
Q 017258 70 KP--GRESTDIEIYGMQGIPPDVLAAHYGEEEEE 101 (374)
Q Consensus 70 kp--gr~~~~C~iCgK~F~~~s~L~~H~rth~ge 101 (374)
++ ..-.|.|+.|.+.|..-..|.+|++..++-
T Consensus 345 hEg~np~~Y~CH~Cdr~ft~G~~L~~HL~kkH~f 378 (467)
T KOG3608|consen 345 HEGNNPILYACHCCDRFFTSGKSLSAHLMKKHGF 378 (467)
T ss_pred ccCCCCCceeeecchhhhccchhHHHHHHHhhcc
Confidence 11 234599999999999999999998765543
No 12
>KOG3608 consensus Zn finger proteins [General function prediction only]
Probab=98.53 E-value=4e-08 Score=96.63 Aligned_cols=89 Identities=21% Similarity=0.361 Sum_probs=66.6
Q ss_pred CCccc-cCcCCCcccChHHHHHHhh------cCccccccCccccCCchhhHHHHhhhccCccccCCCC------------
Q 017258 9 SSKVW-CYYCDREFDDEKILVQHQK------AKHFKCHVCHKKLSTAGGMAIHVLQVHKENVTKVPNA------------ 69 (374)
Q Consensus 9 gEKp~-C~~CgK~Fs~~s~Lk~H~R------eKPfkC~~CgK~Fs~~s~L~rH~r~hH~ekp~~cp~~------------ 69 (374)
+||.. |.+||+-|.++..|-.|.| ..+|.|..|-|+|.+...|+.|++.|-. -|+|+.|
T Consensus 204 ~eKvvACp~Cg~~F~~~tkl~DH~rRqt~l~~n~fqC~~C~KrFaTeklL~~Hv~rHvn--~ykCplCdmtc~~~ssL~~ 281 (467)
T KOG3608|consen 204 NEKVVACPHCGELFRTKTKLFDHLRRQTELNTNSFQCAQCFKRFATEKLLKSHVVRHVN--CYKCPLCDMTCSSASSLTT 281 (467)
T ss_pred CCeEEecchHHHHhccccHHHHHHHhhhhhcCCchHHHHHHHHHhHHHHHHHHHHHhhh--cccccccccCCCChHHHHH
Confidence 67777 8888888888888888877 4578888888888888888888755543 3466653
Q ss_pred -----CCCCCcccccccCCCCCCHHHHHHHHhhhc
Q 017258 70 -----KPGRESTDIEIYGMQGIPPDVLAAHYGEEE 99 (374)
Q Consensus 70 -----kpgr~~~~C~iCgK~F~~~s~L~~H~rth~ 99 (374)
+...++|+|+.|.+.|...++|.+|...|.
T Consensus 282 H~r~rHs~dkpfKCd~Cd~~c~~esdL~kH~~~HS 316 (467)
T KOG3608|consen 282 HIRYRHSKDKPFKCDECDTRCVRESDLAKHVQVHS 316 (467)
T ss_pred HHHhhhccCCCccccchhhhhccHHHHHHHHHhcc
Confidence 222456899999999999999999988775
No 13
>PHA02768 hypothetical protein; Provisional
Probab=98.52 E-value=3.1e-08 Score=73.33 Aligned_cols=42 Identities=10% Similarity=0.226 Sum_probs=25.2
Q ss_pred cccccCccccCCchhhHHHHhhhccCccccCCCCCCCCCcccccccCCCCCCHHHH
Q 017258 36 FKCHVCHKKLSTAGGMAIHVLQVHKENVTKVPNAKPGRESTDIEIYGMQGIPPDVL 91 (374)
Q Consensus 36 fkC~~CgK~Fs~~s~L~rH~r~hH~ekp~~cp~~kpgr~~~~C~iCgK~F~~~s~L 91 (374)
|+|..|||.|.+.++|.+|+|+|+ ++ |+|..|++.|...+.|
T Consensus 6 y~C~~CGK~Fs~~~~L~~H~r~H~--k~------------~kc~~C~k~f~~~s~l 47 (55)
T PHA02768 6 YECPICGEIYIKRKSMITHLRKHN--TN------------LKLSNCKRISLRTGEY 47 (55)
T ss_pred cCcchhCCeeccHHHHHHHHHhcC--Cc------------ccCCcccceeccccee
Confidence 566666666666666666666655 22 5566666666555443
No 14
>PHA00733 hypothetical protein
Probab=98.50 E-value=1e-07 Score=82.62 Aligned_cols=52 Identities=25% Similarity=0.441 Sum_probs=48.5
Q ss_pred CCccc-cCcCCCcccChHHHHHHhh--cCccccccCccccCCchhhHHHHhhhcc
Q 017258 9 SSKVW-CYYCDREFDDEKILVQHQK--AKHFKCHVCHKKLSTAGGMAIHVLQVHK 60 (374)
Q Consensus 9 gEKp~-C~~CgK~Fs~~s~Lk~H~R--eKPfkC~~CgK~Fs~~s~L~rH~r~hH~ 60 (374)
++++| |..|++.|.+...|++|++ +++|+|.+|++.|...+.|.+|++..|+
T Consensus 70 ~~kPy~C~~Cgk~Fss~s~L~~H~r~h~~~~~C~~CgK~F~~~~sL~~H~~~~h~ 124 (128)
T PHA00733 70 AVSPYVCPLCLMPFSSSVSLKQHIRYTEHSKVCPVCGKEFRNTDSTLDHVCKKHN 124 (128)
T ss_pred CCCCccCCCCCCcCCCHHHHHHHHhcCCcCccCCCCCCccCCHHHHHHHHHHhcC
Confidence 46677 9999999999999999999 7899999999999999999999998886
No 15
>PHA02768 hypothetical protein; Provisional
Probab=98.46 E-value=7.7e-08 Score=71.21 Aligned_cols=41 Identities=17% Similarity=0.361 Sum_probs=37.7
Q ss_pred cccCcCCCcccChHHHHHHhh--cCccccccCccccCCchhhH
Q 017258 12 VWCYYCDREFDDEKILVQHQK--AKHFKCHVCHKKLSTAGGMA 52 (374)
Q Consensus 12 p~C~~CgK~Fs~~s~Lk~H~R--eKPfkC~~CgK~Fs~~s~L~ 52 (374)
+.|.+|||.|.+..+|.+|+| .|+|+|..|+|.|.+.+.|.
T Consensus 6 y~C~~CGK~Fs~~~~L~~H~r~H~k~~kc~~C~k~f~~~s~l~ 48 (55)
T PHA02768 6 YECPICGEIYIKRKSMITHLRKHNTNLKLSNCKRISLRTGEYI 48 (55)
T ss_pred cCcchhCCeeccHHHHHHHHHhcCCcccCCcccceecccceeE
Confidence 349999999999999999999 77999999999999888775
No 16
>PLN03086 PRLI-interacting factor K; Provisional
Probab=98.46 E-value=2.5e-07 Score=97.34 Aligned_cols=57 Identities=18% Similarity=0.318 Sum_probs=46.4
Q ss_pred CCccc-cCcCCCcccChHHHHHHhh--cCccccccCccccCCchhhHHHHhhhccCccccCCC
Q 017258 9 SSKVW-CYYCDREFDDEKILVQHQK--AKHFKCHVCHKKLSTAGGMAIHVLQVHKENVTKVPN 68 (374)
Q Consensus 9 gEKp~-C~~CgK~Fs~~s~Lk~H~R--eKPfkC~~CgK~Fs~~s~L~rH~r~hH~ekp~~cp~ 68 (374)
.++++ |.+|++.|. ...|+.|++ .++++|. |++.| .+..|..|+++|-.++++.|..
T Consensus 450 l~~H~~C~~Cgk~f~-~s~LekH~~~~Hkpv~Cp-Cg~~~-~R~~L~~H~~thCp~Kpi~C~f 509 (567)
T PLN03086 450 AKNHVHCEKCGQAFQ-QGEMEKHMKVFHEPLQCP-CGVVL-EKEQMVQHQASTCPLRLITCRF 509 (567)
T ss_pred cccCccCCCCCCccc-hHHHHHHHHhcCCCccCC-CCCCc-chhHHHhhhhccCCCCceeCCC
Confidence 45666 999999996 678999998 8899999 99766 5689999998887788755543
No 17
>KOG3993 consensus Transcription factor (contains Zn finger) [Transcription]
Probab=98.40 E-value=8.1e-08 Score=96.29 Aligned_cols=92 Identities=21% Similarity=0.326 Sum_probs=70.7
Q ss_pred ccCcCCCcccChHHHHHHhh----cCccccccCccccCCchhhHHHHhhhccCccccC----CCC--------------C
Q 017258 13 WCYYCDREFDDEKILVQHQK----AKHFKCHVCHKKLSTAGGMAIHVLQVHKENVTKV----PNA--------------K 70 (374)
Q Consensus 13 ~C~~CgK~Fs~~s~Lk~H~R----eKPfkC~~CgK~Fs~~s~L~rH~r~hH~ekp~~c----p~~--------------k 70 (374)
.|+.|...|.+-..|.+|.. .-.|+|..|+|.|.-..+|..|.|= |.-++..- +-. +
T Consensus 269 iCqLCK~kYeD~F~LAQHrC~RIV~vEYrCPEC~KVFsCPANLASHRRW-HKPR~eaa~a~~~P~k~~~~~rae~~ea~r 347 (500)
T KOG3993|consen 269 ICQLCKEKYEDAFALAQHRCPRIVHVEYRCPECDKVFSCPANLASHRRW-HKPRPEAAKAGSPPPKQAVETRAEVQEAER 347 (500)
T ss_pred HHHHHHHhhhhHHHHhhccCCeeEEeeecCCcccccccCchhhhhhhcc-cCCchhhhhcCCCChhhhhhhhhhhhhccc
Confidence 39999999999999999987 5579999999999999999999854 43332111 100 0
Q ss_pred ----CCCCcccccccCCCCCCHHHHHHHHhhhcCCCccc
Q 017258 71 ----PGRESTDIEIYGMQGIPPDVLAAHYGEEEEEVPSK 105 (374)
Q Consensus 71 ----pgr~~~~C~iCgK~F~~~s~L~~H~rth~ge~~~k 105 (374)
.....|.|++|+|.|.....|++|+.+|......+
T Consensus 348 sg~dss~gi~~C~~C~KkFrRqAYLrKHqlthq~~~~~k 386 (500)
T KOG3993|consen 348 SGDDSSSGIFSCHTCGKKFRRQAYLRKHQLTHQRAPLAK 386 (500)
T ss_pred cCCcccCceeecHHhhhhhHHHHHHHHhHHhhhccccch
Confidence 11124999999999999999999998887654433
No 18
>PHA00732 hypothetical protein
Probab=98.09 E-value=1.7e-06 Score=68.97 Aligned_cols=40 Identities=28% Similarity=0.428 Sum_probs=27.6
Q ss_pred cCcCCCcccChHHHHHHhh--cCccccccCccccCCchhhHHHHh
Q 017258 14 CYYCDREFDDEKILVQHQK--AKHFKCHVCHKKLSTAGGMAIHVL 56 (374)
Q Consensus 14 C~~CgK~Fs~~s~Lk~H~R--eKPfkC~~CgK~Fs~~s~L~rH~r 56 (374)
|..|++.|.+...|++|++ ..++.|..|+++|. .|.+|.+
T Consensus 4 C~~Cgk~F~s~s~Lk~H~r~~H~~~~C~~CgKsF~---~l~~H~~ 45 (79)
T PHA00732 4 CPICGFTTVTLFALKQHARRNHTLTKCPVCNKSYR---RLNQHFY 45 (79)
T ss_pred CCCCCCccCCHHHHHHHhhcccCCCccCCCCCEeC---Chhhhhc
Confidence 7777777777777777765 45677777777776 3666663
No 19
>PHA00732 hypothetical protein
Probab=97.88 E-value=8.7e-06 Score=64.90 Aligned_cols=50 Identities=20% Similarity=0.244 Sum_probs=42.4
Q ss_pred ccccccCccccCCchhhHHHHhhhccCccccCCCCCCCCCcccccccCCCCCCHHHHHHHHhhhcCC
Q 017258 35 HFKCHVCHKKLSTAGGMAIHVLQVHKENVTKVPNAKPGRESTDIEIYGMQGIPPDVLAAHYGEEEEE 101 (374)
Q Consensus 35 PfkC~~CgK~Fs~~s~L~rH~r~hH~ekp~~cp~~kpgr~~~~C~iCgK~F~~~s~L~~H~rth~ge 101 (374)
+|+|..|++.|.+...|.+|++.+|.. +.|+.||+.|.. |..|.+++.+.
T Consensus 1 py~C~~Cgk~F~s~s~Lk~H~r~~H~~--------------~~C~~CgKsF~~---l~~H~~~~~~~ 50 (79)
T PHA00732 1 MFKCPICGFTTVTLFALKQHARRNHTL--------------TKCPVCNKSYRR---LNQHFYSQYDI 50 (79)
T ss_pred CccCCCCCCccCCHHHHHHHhhcccCC--------------CccCCCCCEeCC---hhhhhcccCCc
Confidence 589999999999999999999855542 579999999994 88999887664
No 20
>PHA00616 hypothetical protein
Probab=97.87 E-value=4.9e-06 Score=58.91 Aligned_cols=32 Identities=25% Similarity=0.485 Sum_probs=28.8
Q ss_pred ccccccCccccCCchhhHHHHhhhccCccccC
Q 017258 35 HFKCHVCHKKLSTAGGMAIHVLQVHKENVTKV 66 (374)
Q Consensus 35 PfkC~~CgK~Fs~~s~L~rH~r~hH~ekp~~c 66 (374)
+|+|..||+.|..++.|.+|++.||+++++.|
T Consensus 1 pYqC~~CG~~F~~~s~l~~H~r~~hg~~~~~~ 32 (44)
T PHA00616 1 MYQCLRCGGIFRKKKEVIEHLLSVHKQNKLTL 32 (44)
T ss_pred CCccchhhHHHhhHHHHHHHHHHhcCCCccce
Confidence 68999999999999999999999999987444
No 21
>KOG3993 consensus Transcription factor (contains Zn finger) [Transcription]
Probab=97.57 E-value=2.2e-05 Score=79.13 Aligned_cols=51 Identities=29% Similarity=0.570 Sum_probs=44.5
Q ss_pred ccccCcCCCcccChHHHHHHhh---------------cC----------------------ccccccCccccCCchhhHH
Q 017258 11 KVWCYYCDREFDDEKILVQHQK---------------AK----------------------HFKCHVCHKKLSTAGGMAI 53 (374)
Q Consensus 11 Kp~C~~CgK~Fs~~s~Lk~H~R---------------eK----------------------PfkC~~CgK~Fs~~s~L~r 53 (374)
-|.|.+|+|.|+--.+|..|.| +| -|.|.+|+|+|.+...|++
T Consensus 295 EYrCPEC~KVFsCPANLASHRRWHKPR~eaa~a~~~P~k~~~~~rae~~ea~rsg~dss~gi~~C~~C~KkFrRqAYLrK 374 (500)
T KOG3993|consen 295 EYRCPECDKVFSCPANLASHRRWHKPRPEAAKAGSPPPKQAVETRAEVQEAERSGDDSSSGIFSCHTCGKKFRRQAYLRK 374 (500)
T ss_pred eecCCcccccccCchhhhhhhcccCCchhhhhcCCCChhhhhhhhhhhhhccccCCcccCceeecHHhhhhhHHHHHHHH
Confidence 3559999999999999999988 11 2789999999999999999
Q ss_pred HHhhhccC
Q 017258 54 HVLQVHKE 61 (374)
Q Consensus 54 H~r~hH~e 61 (374)
|+.+||..
T Consensus 375 Hqlthq~~ 382 (500)
T KOG3993|consen 375 HQLTHQRA 382 (500)
T ss_pred hHHhhhcc
Confidence 99888854
No 22
>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A ....
Probab=97.52 E-value=4e-05 Score=48.23 Aligned_cols=25 Identities=12% Similarity=-0.011 Sum_probs=16.7
Q ss_pred hhHHHHhhhccCccccCCCCCCCCCcccccccCCCCC
Q 017258 50 GMAIHVLQVHKENVTKVPNAKPGRESTDIEIYGMQGI 86 (374)
Q Consensus 50 ~L~rH~r~hH~ekp~~cp~~kpgr~~~~C~iCgK~F~ 86 (374)
+|.+|+++|.++++ |+|.+|++.|.
T Consensus 1 ~l~~H~~~H~~~k~------------~~C~~C~k~F~ 25 (26)
T PF13465_consen 1 NLRRHMRTHTGEKP------------YKCPYCGKSFS 25 (26)
T ss_dssp HHHHHHHHHSSSSS------------EEESSSSEEES
T ss_pred CHHHHhhhcCCCCC------------CCCCCCcCeeC
Confidence 36677777766665 66677776664
No 23
>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A.
Probab=97.50 E-value=5e-05 Score=61.02 Aligned_cols=71 Identities=24% Similarity=0.296 Sum_probs=21.1
Q ss_pred cCcCCCcccChHHHHHHhhcC-ccccccCccccCCchhhHHHHhhhccCccccCCCCCCCCCcccccccCCCCCCHHHHH
Q 017258 14 CYYCDREFDDEKILVQHQKAK-HFKCHVCHKKLSTAGGMAIHVLQVHKENVTKVPNAKPGRESTDIEIYGMQGIPPDVLA 92 (374)
Q Consensus 14 C~~CgK~Fs~~s~Lk~H~ReK-PfkC~~CgK~Fs~~s~L~rH~r~hH~ekp~~cp~~kpgr~~~~C~iCgK~F~~~s~L~ 92 (374)
|.+|+..|.....|..|+++. .+... ..+.+.....|..+.+....+ .+.|.+|++.|.....|.
T Consensus 2 C~~C~~~f~~~~~l~~H~~~~H~~~~~-~~~~l~~~~~~~~~~~~~~~~-------------~~~C~~C~~~f~s~~~l~ 67 (100)
T PF12756_consen 2 CLFCDESFSSVDDLLQHMKKKHGFDIP-DQKYLVDPNRLLNYLRKKVKE-------------SFRCPYCNKTFRSREALQ 67 (100)
T ss_dssp ------------------------------------------------S-------------SEEBSSSS-EESSHHHHH
T ss_pred ccccccccccccccccccccccccccc-cccccccccccccccccccCC-------------CCCCCccCCCCcCHHHHH
Confidence 666777777777777776621 12211 222223333344443222211 289999999999999999
Q ss_pred HHHhhh
Q 017258 93 AHYGEE 98 (374)
Q Consensus 93 ~H~rth 98 (374)
.|++.+
T Consensus 68 ~Hm~~~ 73 (100)
T PF12756_consen 68 EHMRSK 73 (100)
T ss_dssp HHHHHT
T ss_pred HHHcCc
Confidence 999975
No 24
>COG5189 SFP1 Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
Probab=97.49 E-value=2.9e-05 Score=75.88 Aligned_cols=65 Identities=23% Similarity=0.401 Sum_probs=47.8
Q ss_pred cCcccccc--CccccCCchhhHHHHhhhccC-ccccCCC-----C-CCCCCcccccccCCCCCCHHHHHHHHhh
Q 017258 33 AKHFKCHV--CHKKLSTAGGMAIHVLQVHKE-NVTKVPN-----A-KPGRESTDIEIYGMQGIPPDVLAAHYGE 97 (374)
Q Consensus 33 eKPfkC~~--CgK~Fs~~s~L~rH~r~hH~e-kp~~cp~-----~-kpgr~~~~C~iCgK~F~~~s~L~~H~rt 97 (374)
+|+|+|.+ |+|+++..-.|+-|++.=|.. +.+.-+. . ....|+|.|++|+|+|..-..|+-|++.
T Consensus 347 ~KpykCpV~gC~K~YknqnGLKYH~lhGH~~~~~~~~p~p~~~~~F~~~~KPYrCevC~KRYKNlNGLKYHr~H 420 (423)
T COG5189 347 GKPYKCPVEGCNKKYKNQNGLKYHMLHGHQNQKLHENPSPEKMNIFSAKDKPYRCEVCDKRYKNLNGLKYHRKH 420 (423)
T ss_pred CceecCCCCCchhhhccccchhhhhhccccCcccCCCCCccccccccccCCceeccccchhhccCccceecccc
Confidence 79999998 999999999999998543411 2111111 0 1234559999999999999999988764
No 25
>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A ....
Probab=97.48 E-value=5.1e-05 Score=47.73 Aligned_cols=22 Identities=36% Similarity=0.700 Sum_probs=18.5
Q ss_pred HHHHHhh----cCccccccCccccCC
Q 017258 26 ILVQHQK----AKHFKCHVCHKKLST 47 (374)
Q Consensus 26 ~Lk~H~R----eKPfkC~~CgK~Fs~ 47 (374)
+|++|++ ||+|+|.+|+++|.+
T Consensus 1 ~l~~H~~~H~~~k~~~C~~C~k~F~~ 26 (26)
T PF13465_consen 1 NLRRHMRTHTGEKPYKCPYCGKSFSN 26 (26)
T ss_dssp HHHHHHHHHSSSSSEEESSSSEEESS
T ss_pred CHHHHhhhcCCCCCCCCCCCcCeeCc
Confidence 4667777 999999999999974
No 26
>KOG2893 consensus Zn finger protein [General function prediction only]
Probab=97.47 E-value=0.0011 Score=62.92 Aligned_cols=53 Identities=34% Similarity=0.455 Sum_probs=39.8
Q ss_pred CCCCCCCCCCCCCCccccCCCCCCCCCceEEEEecccccChHHHhhccCceee
Q 017258 293 SGPNTGGPSIGPPPVIANKAPATQPAVNEVYLVWEDEAMSMEERRMSSVKYQV 345 (374)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (374)
+...|+.++.+.+.++....+++--++.-.-|+-|||.+|.||||+.|+|||-
T Consensus 284 sttsttnsta~kpaasitskpatltttsatklihpdedisleerraqlpkyqr 336 (341)
T KOG2893|consen 284 STTSTTNSTAGKPAASITSKPATLTTTSATKLIHPDEDISLEERRAQLPKYQR 336 (341)
T ss_pred ccccCcccccccchhhhhcccceeccccceeeeCCcccccHHHHhhhhhhhhh
Confidence 34444445556666655555777766777799999999999999999999984
No 27
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=97.45 E-value=0.00015 Score=53.39 Aligned_cols=43 Identities=28% Similarity=0.666 Sum_probs=20.4
Q ss_pred cCcCCCcccChHHHHHHhh------cCccccccCccccCCchhhHHHHhhhc
Q 017258 14 CYYCDREFDDEKILVQHQK------AKHFKCHVCHKKLSTAGGMAIHVLQVH 59 (374)
Q Consensus 14 C~~CgK~Fs~~s~Lk~H~R------eKPfkC~~CgK~Fs~~s~L~rH~r~hH 59 (374)
|.+|++. .+...|..|.. .+.+.|.+|.+.+. .+|.+|++.+|
T Consensus 5 CP~C~~~-~~~~~L~~H~~~~H~~~~~~v~CPiC~~~~~--~~l~~Hl~~~H 53 (54)
T PF05605_consen 5 CPYCGKG-FSESSLVEHCEDEHRSESKNVVCPICSSRVT--DNLIRHLNSQH 53 (54)
T ss_pred CCCCCCc-cCHHHHHHHHHhHCcCCCCCccCCCchhhhh--hHHHHHHHHhc
Confidence 5555552 23344555544 23455555555433 25555554444
No 28
>PLN03086 PRLI-interacting factor K; Provisional
Probab=97.36 E-value=0.00017 Score=76.24 Aligned_cols=32 Identities=25% Similarity=0.579 Sum_probs=25.4
Q ss_pred cCccccccCccccCCchhhHHHHhhhccCccccCC
Q 017258 33 AKHFKCHVCHKKLSTAGGMAIHVLQVHKENVTKVP 67 (374)
Q Consensus 33 eKPfkC~~CgK~Fs~~s~L~rH~r~hH~ekp~~cp 67 (374)
++++.|.+|++.|. ...|.+|++.|| +++.|+
T Consensus 451 ~~H~~C~~Cgk~f~-~s~LekH~~~~H--kpv~Cp 482 (567)
T PLN03086 451 KNHVHCEKCGQAFQ-QGEMEKHMKVFH--EPLQCP 482 (567)
T ss_pred ccCccCCCCCCccc-hHHHHHHHHhcC--CCccCC
Confidence 35778999999996 678999999887 555554
No 29
>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....
Probab=97.31 E-value=9.5e-05 Score=44.60 Aligned_cols=22 Identities=27% Similarity=0.730 Sum_probs=15.5
Q ss_pred cccccCccccCCchhhHHHHhh
Q 017258 36 FKCHVCHKKLSTAGGMAIHVLQ 57 (374)
Q Consensus 36 fkC~~CgK~Fs~~s~L~rH~r~ 57 (374)
|+|..|++.|.++..|.+|++.
T Consensus 1 y~C~~C~~~f~~~~~l~~H~~~ 22 (23)
T PF00096_consen 1 YKCPICGKSFSSKSNLKRHMRR 22 (23)
T ss_dssp EEETTTTEEESSHHHHHHHHHH
T ss_pred CCCCCCCCccCCHHHHHHHHhH
Confidence 5677777777777777777665
No 30
>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A ....
Probab=97.24 E-value=0.00014 Score=43.51 Aligned_cols=24 Identities=25% Similarity=0.661 Sum_probs=16.5
Q ss_pred cccccCccccCCchhhHHHHhhhc
Q 017258 36 FKCHVCHKKLSTAGGMAIHVLQVH 59 (374)
Q Consensus 36 fkC~~CgK~Fs~~s~L~rH~r~hH 59 (374)
|+|.+|++.|.+...|++|+++||
T Consensus 1 ~~C~~C~~~~~~~~~l~~H~~~~H 24 (24)
T PF13894_consen 1 FQCPICGKSFRSKSELRQHMRTHH 24 (24)
T ss_dssp EE-SSTS-EESSHHHHHHHHHHHS
T ss_pred CCCcCCCCcCCcHHHHHHHHHhhC
Confidence 567777777777777777777665
No 31
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=97.21 E-value=0.00043 Score=50.95 Aligned_cols=53 Identities=19% Similarity=0.302 Sum_probs=41.1
Q ss_pred ccccccCccccCCchhhHHHHhhhccCccccCCCCCCCCCcccccccCCCCCCHHHHHHHHhhhcC
Q 017258 35 HFKCHVCHKKLSTAGGMAIHVLQVHKENVTKVPNAKPGRESTDIEIYGMQGIPPDVLAAHYGEEEE 100 (374)
Q Consensus 35 PfkC~~CgK~Fs~~s~L~rH~r~hH~ekp~~cp~~kpgr~~~~C~iCgK~F~~~s~L~~H~rth~g 100 (374)
-|.|.+|++ ..+...|..|....|.... +.+.|.+|...+. .+|.+|+..+++
T Consensus 2 ~f~CP~C~~-~~~~~~L~~H~~~~H~~~~----------~~v~CPiC~~~~~--~~l~~Hl~~~H~ 54 (54)
T PF05605_consen 2 SFTCPYCGK-GFSESSLVEHCEDEHRSES----------KNVVCPICSSRVT--DNLIRHLNSQHR 54 (54)
T ss_pred CcCCCCCCC-ccCHHHHHHHHHhHCcCCC----------CCccCCCchhhhh--hHHHHHHHHhcC
Confidence 489999999 5566889999988886532 2388999998655 489999987653
No 32
>COG5189 SFP1 Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
Probab=97.18 E-value=0.00014 Score=71.17 Aligned_cols=47 Identities=26% Similarity=0.673 Sum_probs=43.1
Q ss_pred CCccc-cCc--CCCcccChHHHHHHhh--c---------------------CccccccCccccCCchhhHHHH
Q 017258 9 SSKVW-CYY--CDREFDDEKILVQHQK--A---------------------KHFKCHVCHKKLSTAGGMAIHV 55 (374)
Q Consensus 9 gEKp~-C~~--CgK~Fs~~s~Lk~H~R--e---------------------KPfkC~~CgK~Fs~~s~L~rH~ 55 (374)
++|+| |.+ |+|.|.....|+-|+. . |||+|++|+|+++....|+-|+
T Consensus 346 d~KpykCpV~gC~K~YknqnGLKYH~lhGH~~~~~~~~p~p~~~~~F~~~~KPYrCevC~KRYKNlNGLKYHr 418 (423)
T COG5189 346 DGKPYKCPVEGCNKKYKNQNGLKYHMLHGHQNQKLHENPSPEKMNIFSAKDKPYRCEVCDKRYKNLNGLKYHR 418 (423)
T ss_pred cCceecCCCCCchhhhccccchhhhhhccccCcccCCCCCccccccccccCCceeccccchhhccCccceecc
Confidence 46888 988 9999999999999988 2 8999999999999999999996
No 33
>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B.
Probab=96.85 E-value=0.00045 Score=43.25 Aligned_cols=25 Identities=24% Similarity=0.460 Sum_probs=18.4
Q ss_pred ccccccCccccCCchhhHHHHhhhc
Q 017258 35 HFKCHVCHKKLSTAGGMAIHVLQVH 59 (374)
Q Consensus 35 PfkC~~CgK~Fs~~s~L~rH~r~hH 59 (374)
+|+|..|++.|.+...|..|++.|+
T Consensus 1 ~~~C~~C~~~F~~~~~l~~H~~~h~ 25 (27)
T PF13912_consen 1 PFECDECGKTFSSLSALREHKRSHC 25 (27)
T ss_dssp SEEETTTTEEESSHHHHHHHHCTTT
T ss_pred CCCCCccCCccCChhHHHHHhHHhc
Confidence 4677777777777777777776654
No 34
>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....
Probab=96.78 E-value=0.00064 Score=40.90 Aligned_cols=23 Identities=17% Similarity=0.083 Sum_probs=21.3
Q ss_pred ccccccCCCCCCHHHHHHHHhhh
Q 017258 76 TDIEIYGMQGIPPDVLAAHYGEE 98 (374)
Q Consensus 76 ~~C~iCgK~F~~~s~L~~H~rth 98 (374)
|.|.+|++.|.....|.+|++.|
T Consensus 1 y~C~~C~~~f~~~~~l~~H~~~H 23 (23)
T PF00096_consen 1 YKCPICGKSFSSKSNLKRHMRRH 23 (23)
T ss_dssp EEETTTTEEESSHHHHHHHHHHH
T ss_pred CCCCCCCCccCCHHHHHHHHhHC
Confidence 67999999999999999999875
No 35
>PHA00616 hypothetical protein
Probab=96.77 E-value=0.00064 Score=48.22 Aligned_cols=30 Identities=7% Similarity=-0.190 Sum_probs=27.6
Q ss_pred ccccccCCCCCCHHHHHHHHhhhcCCCccc
Q 017258 76 TDIEIYGMQGIPPDVLAAHYGEEEEEVPSK 105 (374)
Q Consensus 76 ~~C~iCgK~F~~~s~L~~H~rth~ge~~~k 105 (374)
|+|..||+.|+..++|.+|++.|+++++..
T Consensus 2 YqC~~CG~~F~~~s~l~~H~r~~hg~~~~~ 31 (44)
T PHA00616 2 YQCLRCGGIFRKKKEVIEHLLSVHKQNKLT 31 (44)
T ss_pred CccchhhHHHhhHHHHHHHHHHhcCCCccc
Confidence 889999999999999999999999987653
No 36
>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A ....
Probab=96.28 E-value=0.0025 Score=37.95 Aligned_cols=24 Identities=17% Similarity=0.079 Sum_probs=20.0
Q ss_pred ccccccCCCCCCHHHHHHHHhhhc
Q 017258 76 TDIEIYGMQGIPPDVLAAHYGEEE 99 (374)
Q Consensus 76 ~~C~iCgK~F~~~s~L~~H~rth~ 99 (374)
|.|.+|++.|.....|++|+++|+
T Consensus 1 ~~C~~C~~~~~~~~~l~~H~~~~H 24 (24)
T PF13894_consen 1 FQCPICGKSFRSKSELRQHMRTHH 24 (24)
T ss_dssp EE-SSTS-EESSHHHHHHHHHHHS
T ss_pred CCCcCCCCcCCcHHHHHHHHHhhC
Confidence 679999999999999999998864
No 37
>smart00355 ZnF_C2H2 zinc finger.
Probab=96.14 E-value=0.0037 Score=37.53 Aligned_cols=23 Identities=17% Similarity=0.509 Sum_probs=15.8
Q ss_pred cccccCccccCCchhhHHHHhhh
Q 017258 36 FKCHVCHKKLSTAGGMAIHVLQV 58 (374)
Q Consensus 36 fkC~~CgK~Fs~~s~L~rH~r~h 58 (374)
|+|..|++.|.....|.+|++.|
T Consensus 1 ~~C~~C~~~f~~~~~l~~H~~~H 23 (26)
T smart00355 1 YRCPECGKVFKSKSALKEHMRTH 23 (26)
T ss_pred CCCCCCcchhCCHHHHHHHHHHh
Confidence 46777777777777777777533
No 38
>PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A.
Probab=96.00 E-value=0.0019 Score=47.15 Aligned_cols=31 Identities=13% Similarity=0.288 Sum_probs=22.9
Q ss_pred cCccccccCccccCCchhhHHHHhhhccCcc
Q 017258 33 AKHFKCHVCHKKLSTAGGMAIHVLQVHKENV 63 (374)
Q Consensus 33 eKPfkC~~CgK~Fs~~s~L~rH~r~hH~ekp 63 (374)
++|..|.+|+..+.+..+|+||+.++|+.|+
T Consensus 22 ~~PatCP~C~a~~~~srnLrRHle~~H~~k~ 52 (54)
T PF09237_consen 22 EQPATCPICGAVIRQSRNLRRHLEIRHFKKP 52 (54)
T ss_dssp S--EE-TTT--EESSHHHHHHHHHHHTTTS-
T ss_pred CCCCCCCcchhhccchhhHHHHHHHHhcccC
Confidence 8899999999999999999999999998764
No 39
>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B.
Probab=95.48 E-value=0.007 Score=37.74 Aligned_cols=25 Identities=12% Similarity=0.001 Sum_probs=23.1
Q ss_pred ccccccCCCCCCHHHHHHHHhhhcC
Q 017258 76 TDIEIYGMQGIPPDVLAAHYGEEEE 100 (374)
Q Consensus 76 ~~C~iCgK~F~~~s~L~~H~rth~g 100 (374)
|+|..|++.|.....|.+|++.|.+
T Consensus 2 ~~C~~C~~~F~~~~~l~~H~~~h~~ 26 (27)
T PF13912_consen 2 FECDECGKTFSSLSALREHKRSHCS 26 (27)
T ss_dssp EEETTTTEEESSHHHHHHHHCTTTT
T ss_pred CCCCccCCccCChhHHHHHhHHhcC
Confidence 8899999999999999999988754
No 40
>smart00355 ZnF_C2H2 zinc finger.
Probab=95.23 E-value=0.017 Score=34.51 Aligned_cols=24 Identities=13% Similarity=-0.011 Sum_probs=21.6
Q ss_pred ccccccCCCCCCHHHHHHHHhhhc
Q 017258 76 TDIEIYGMQGIPPDVLAAHYGEEE 99 (374)
Q Consensus 76 ~~C~iCgK~F~~~s~L~~H~rth~ 99 (374)
|+|..|++.|.....|..|++.|.
T Consensus 1 ~~C~~C~~~f~~~~~l~~H~~~H~ 24 (26)
T smart00355 1 YRCPECGKVFKSKSALKEHMRTHX 24 (26)
T ss_pred CCCCCCcchhCCHHHHHHHHHHhc
Confidence 579999999999999999998764
No 41
>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length. The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.
Probab=95.14 E-value=0.009 Score=37.56 Aligned_cols=21 Identities=43% Similarity=0.803 Sum_probs=12.5
Q ss_pred cccCcCCCcccChHHHHHHhh
Q 017258 12 VWCYYCDREFDDEKILVQHQK 32 (374)
Q Consensus 12 p~C~~CgK~Fs~~s~Lk~H~R 32 (374)
++|..|++.|.....|..|++
T Consensus 2 ~~C~~C~k~f~~~~~~~~H~~ 22 (27)
T PF12171_consen 2 FYCDACDKYFSSENQLKQHMK 22 (27)
T ss_dssp CBBTTTTBBBSSHHHHHCCTT
T ss_pred CCcccCCCCcCCHHHHHHHHc
Confidence 446666666666666666654
No 42
>PF13909 zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W_A.
Probab=94.99 E-value=0.013 Score=35.72 Aligned_cols=24 Identities=25% Similarity=0.527 Sum_probs=17.6
Q ss_pred cccccCccccCCchhhHHHHhhhcc
Q 017258 36 FKCHVCHKKLSTAGGMAIHVLQVHK 60 (374)
Q Consensus 36 fkC~~CgK~Fs~~s~L~rH~r~hH~ 60 (374)
|+|..|+.... ...|.+|++.+|+
T Consensus 1 y~C~~C~y~t~-~~~l~~H~~~~H~ 24 (24)
T PF13909_consen 1 YKCPHCSYSTS-KSNLKRHLKRHHP 24 (24)
T ss_dssp EE-SSSS-EES-HHHHHHHHHHHHS
T ss_pred CCCCCCCCcCC-HHHHHHHHHhhCc
Confidence 67888888877 7888888888764
No 43
>KOG2231 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.84 E-value=0.024 Score=61.20 Aligned_cols=68 Identities=21% Similarity=0.313 Sum_probs=41.7
Q ss_pred ccCcCCCcccChHHHHHHhhcCccccccCc------cccCCchhhHHHHhhhccCccccCCCCCCCCCccccc--ccC-C
Q 017258 13 WCYYCDREFDDEKILVQHQKAKHFKCHVCH------KKLSTAGGMAIHVLQVHKENVTKVPNAKPGRESTDIE--IYG-M 83 (374)
Q Consensus 13 ~C~~CgK~Fs~~s~Lk~H~ReKPfkC~~Cg------K~Fs~~s~L~rH~r~hH~ekp~~cp~~kpgr~~~~C~--iCg-K 83 (374)
.|.+|...|.....|.+|++...|.|.+|+ .-|..-+.|..|-|..| |.|+ .|- +
T Consensus 184 ~C~~C~~~fld~~el~rH~~~~h~~chfC~~~~~~neyy~~~~dLe~HfR~~H----------------flCE~~~C~~~ 247 (669)
T KOG2231|consen 184 LCKFCHERFLDDDELYRHLRFDHEFCHFCDYKTGQNEYYNDYDDLEEHFRKGH----------------FLCEEEFCRTK 247 (669)
T ss_pred cchhhhhhhccHHHHHHhhccceeheeecCcccccchhcccchHHHHHhhhcC----------------ccccccccccc
Confidence 377777777777777777776666666664 23555566777766666 5665 553 4
Q ss_pred CCCCHHHHHHHHh
Q 017258 84 QGIPPDVLAAHYG 96 (374)
Q Consensus 84 ~F~~~s~L~~H~r 96 (374)
.|.....+..|++
T Consensus 248 ~f~~~~~~ei~lk 260 (669)
T KOG2231|consen 248 KFYVAFELEIELK 260 (669)
T ss_pred eeeehhHHHHHHH
Confidence 5555444555544
No 44
>KOG2231 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.69 E-value=0.034 Score=60.03 Aligned_cols=21 Identities=29% Similarity=0.605 Sum_probs=13.0
Q ss_pred ccChHHHHHHhh--cCccccccC
Q 017258 21 FDDEKILVQHQK--AKHFKCHVC 41 (374)
Q Consensus 21 Fs~~s~Lk~H~R--eKPfkC~~C 41 (374)
|.....|++|++ .+-+.|.+|
T Consensus 124 ~~s~~~Lk~H~~~~H~~~~c~lC 146 (669)
T KOG2231|consen 124 FKSVENLKNHMRDQHKLHLCSLC 146 (669)
T ss_pred hhHHHHHHHHHHHhhhhhccccc
Confidence 346788888886 444555443
No 45
>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A.
Probab=94.45 E-value=0.018 Score=35.17 Aligned_cols=19 Identities=26% Similarity=0.763 Sum_probs=8.8
Q ss_pred ccccCccccCCchhhHHHH
Q 017258 37 KCHVCHKKLSTAGGMAIHV 55 (374)
Q Consensus 37 kC~~CgK~Fs~~s~L~rH~ 55 (374)
.|.+|++.|.+...|+.|+
T Consensus 2 ~C~~C~~~f~s~~~~~~H~ 20 (25)
T PF12874_consen 2 YCDICNKSFSSENSLRQHL 20 (25)
T ss_dssp EETTTTEEESSHHHHHHHH
T ss_pred CCCCCCCCcCCHHHHHHHH
Confidence 3444444444444444444
No 46
>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A.
Probab=94.17 E-value=0.03 Score=34.13 Aligned_cols=21 Identities=33% Similarity=0.812 Sum_probs=19.4
Q ss_pred cccCcCCCcccChHHHHHHhh
Q 017258 12 VWCYYCDREFDDEKILVQHQK 32 (374)
Q Consensus 12 p~C~~CgK~Fs~~s~Lk~H~R 32 (374)
++|.+|++.|.....|+.|++
T Consensus 1 ~~C~~C~~~f~s~~~~~~H~~ 21 (25)
T PF12874_consen 1 FYCDICNKSFSSENSLRQHLR 21 (25)
T ss_dssp EEETTTTEEESSHHHHHHHHT
T ss_pred CCCCCCCCCcCCHHHHHHHHC
Confidence 359999999999999999987
No 47
>PRK04860 hypothetical protein; Provisional
Probab=94.03 E-value=0.021 Score=51.45 Aligned_cols=39 Identities=18% Similarity=0.214 Sum_probs=32.1
Q ss_pred CccccccCccccCCchhhHHHHhhhccCccccCCCCCCCCCcccccccCCCCCCH
Q 017258 34 KHFKCHVCHKKLSTAGGMAIHVLQVHKENVTKVPNAKPGRESTDIEIYGMQGIPP 88 (374)
Q Consensus 34 KPfkC~~CgK~Fs~~s~L~rH~r~hH~ekp~~cp~~kpgr~~~~C~iCgK~F~~~ 88 (374)
-+|+|. |++ ....+++|.++|.+++. |.|..|++.|...
T Consensus 118 ~~Y~C~-C~~---~~~~~rrH~ri~~g~~~------------YrC~~C~~~l~~~ 156 (160)
T PRK04860 118 FPYRCK-CQE---HQLTVRRHNRVVRGEAV------------YRCRRCGETLVFK 156 (160)
T ss_pred EEEEcC-CCC---eeCHHHHHHHHhcCCcc------------EECCCCCceeEEe
Confidence 468998 987 77788999999998876 8888898887654
No 48
>COG5048 FOG: Zn-finger [General function prediction only]
Probab=93.72 E-value=0.023 Score=55.80 Aligned_cols=53 Identities=25% Similarity=0.440 Sum_probs=47.1
Q ss_pred cCcCCCcccChHHHHHHhh------c--Cccccc--cCccccCCchhhHHHHhhhccCccccC
Q 017258 14 CYYCDREFDDEKILVQHQK------A--KHFKCH--VCHKKLSTAGGMAIHVLQVHKENVTKV 66 (374)
Q Consensus 14 C~~CgK~Fs~~s~Lk~H~R------e--KPfkC~--~CgK~Fs~~s~L~rH~r~hH~ekp~~c 66 (374)
|..|.+.|.+...|.+|.+ + ++|.|. .|++.|.+.+.+.+|.++|.+.+.+.|
T Consensus 292 ~~~~~~~~s~~~~l~~~~~~~~h~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (467)
T COG5048 292 SKQCNISFSRSSPLTRHLRSVNHSGESLKPFSCPYSLCGKLFSRNDALKRHILLHTSISPAKE 354 (467)
T ss_pred CccccCCccccccccccccccccccccCCceeeeccCCCccccccccccCCcccccCCCcccc
Confidence 9999999999999999877 6 999999 799999999999999988887765444
No 49
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=93.57 E-value=0.073 Score=53.15 Aligned_cols=73 Identities=21% Similarity=0.341 Sum_probs=53.9
Q ss_pred ccCcCCCcccChHHHHHHhhcCccccccCcc-------ccCCchhhHHHHhhhccCccccCCCCCCCCCccccc--cc--
Q 017258 13 WCYYCDREFDDEKILVQHQKAKHFKCHVCHK-------KLSTAGGMAIHVLQVHKENVTKVPNAKPGRESTDIE--IY-- 81 (374)
Q Consensus 13 ~C~~CgK~Fs~~s~Lk~H~ReKPfkC~~CgK-------~Fs~~s~L~rH~r~hH~ekp~~cp~~kpgr~~~~C~--iC-- 81 (374)
.|.+|.+.|-+...|-+|+|+|.-+|.+|++ -|..-..|.+|.+.-| |.|. .|
T Consensus 222 ~C~FC~~~FYdDDEL~~HcR~~HE~ChICD~v~p~~~QYFK~Y~~Le~HF~~~h----------------y~ct~qtc~~ 285 (493)
T COG5236 222 LCIFCKIYFYDDDELRRHCRLRHEACHICDMVGPIRYQYFKSYEDLEAHFRNAH----------------YCCTFQTCRV 285 (493)
T ss_pred hhhhccceecChHHHHHHHHhhhhhhhhhhccCccchhhhhCHHHHHHHhhcCc----------------eEEEEEEEec
Confidence 3999999999999999999977777888876 3777888888876554 3342 22
Q ss_pred C--CCCCCHHHHHHHHhhhcCC
Q 017258 82 G--MQGIPPDVLAAHYGEEEEE 101 (374)
Q Consensus 82 g--K~F~~~s~L~~H~rth~ge 101 (374)
| ..|...-.|..|+...++.
T Consensus 286 ~k~~vf~~~~el~~h~~~~h~~ 307 (493)
T COG5236 286 GKCYVFPYHTELLEHLTRFHKV 307 (493)
T ss_pred CcEEEeccHHHHHHHHHHHhhc
Confidence 2 2567777888898665554
No 50
>KOG1146 consensus Homeobox protein [General function prediction only]
Probab=93.50 E-value=0.031 Score=63.80 Aligned_cols=84 Identities=14% Similarity=0.163 Sum_probs=62.7
Q ss_pred cCcCCCcccChHHHHHHhh-----cCccccccCccccCCchhhHHHHhhhccCcc-ccCC-------CC-----CCCCCc
Q 017258 14 CYYCDREFDDEKILVQHQK-----AKHFKCHVCHKKLSTAGGMAIHVLQVHKENV-TKVP-------NA-----KPGRES 75 (374)
Q Consensus 14 C~~CgK~Fs~~s~Lk~H~R-----eKPfkC~~CgK~Fs~~s~L~rH~r~hH~ekp-~~cp-------~~-----kpgr~~ 75 (374)
|.-|+..|.++..+.-|+. .|-|+|.+|+..|+..+.|..|+|..|-+.. -.|- ++ .-+.+.
T Consensus 439 ~~~~e~~~~s~r~~~~~t~~L~S~~kt~~cpkc~~~yk~a~~L~vhmRskhp~~~~~~c~~gq~~~~~arg~~~~~~~~p 518 (1406)
T KOG1146|consen 439 LTKAEPLLESKRSLEGQTVVLHSFFKTLKCPKCNWHYKLAQTLGVHMRSKHPESQSAYCKAGQNHPRLARGEVYRCPGKP 518 (1406)
T ss_pred ccchhhhhhhhcccccceeeeecccccccCCccchhhhhHHHhhhcccccccccchhHhHhccccccccccccccCCCCc
Confidence 5556667777766666666 7889999999999999999999998664421 1111 10 112345
Q ss_pred ccccccCCCCCCHHHHHHHHhh
Q 017258 76 TDIEIYGMQGIPPDVLAAHYGE 97 (374)
Q Consensus 76 ~~C~iCgK~F~~~s~L~~H~rt 97 (374)
|.|..|.-.+.....|.+|++.
T Consensus 519 ~~C~~C~~stttng~LsihlqS 540 (1406)
T KOG1146|consen 519 YPCRACNYSTTTNGNLSIHLQS 540 (1406)
T ss_pred ccceeeeeeeecchHHHHHHHH
Confidence 9999999999999999999875
No 51
>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length. The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.
Probab=93.26 E-value=0.037 Score=34.71 Aligned_cols=22 Identities=27% Similarity=0.625 Sum_probs=15.7
Q ss_pred cccccCccccCCchhhHHHHhh
Q 017258 36 FKCHVCHKKLSTAGGMAIHVLQ 57 (374)
Q Consensus 36 fkC~~CgK~Fs~~s~L~rH~r~ 57 (374)
|.|..|++.|.+...|..|++.
T Consensus 2 ~~C~~C~k~f~~~~~~~~H~~s 23 (27)
T PF12171_consen 2 FYCDACDKYFSSENQLKQHMKS 23 (27)
T ss_dssp CBBTTTTBBBSSHHHHHCCTTS
T ss_pred CCcccCCCCcCCHHHHHHHHcc
Confidence 5677777777777777777643
No 52
>smart00451 ZnF_U1 U1-like zinc finger. Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.
Probab=92.65 E-value=0.093 Score=34.42 Aligned_cols=21 Identities=33% Similarity=0.697 Sum_probs=14.7
Q ss_pred cccCcCCCcccChHHHHHHhh
Q 017258 12 VWCYYCDREFDDEKILVQHQK 32 (374)
Q Consensus 12 p~C~~CgK~Fs~~s~Lk~H~R 32 (374)
++|.+|++.|.+...+..|++
T Consensus 4 ~~C~~C~~~~~~~~~~~~H~~ 24 (35)
T smart00451 4 FYCKLCNVTFTDEISVEAHLK 24 (35)
T ss_pred eEccccCCccCCHHHHHHHHC
Confidence 457777777777777777765
No 53
>KOG1146 consensus Homeobox protein [General function prediction only]
Probab=92.28 E-value=0.054 Score=61.94 Aligned_cols=87 Identities=10% Similarity=0.107 Sum_probs=65.2
Q ss_pred ccCcCCCcccChHHHHHHhh-cCccccccCccccCCchhhHHHHhhhcc-Cccc--cC--CCCCCCCCcccccccCCCCC
Q 017258 13 WCYYCDREFDDEKILVQHQK-AKHFKCHVCHKKLSTAGGMAIHVLQVHK-ENVT--KV--PNAKPGRESTDIEIYGMQGI 86 (374)
Q Consensus 13 ~C~~CgK~Fs~~s~Lk~H~R-eKPfkC~~CgK~Fs~~s~L~rH~r~hH~-ekp~--~c--p~~kpgr~~~~C~iCgK~F~ 86 (374)
.|..|++.|.-...+. |+. +++|+|.+|...|.....|..|.+..-. .+.. .- +.-.+..+.| |.+|...|.
T Consensus 1262 ~c~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~l~~~~~k~~~~~~~~~~~~~~~l~~~d~~~~-c~~c~~~~~ 1339 (1406)
T KOG1146|consen 1262 ECGAVDELLTPSFGIS-TLDVTHRYLCRQCKMAFDGEAPLTAHQRKFCFAGRGSGGSMPPPLRVPDCTYH-CLACEVLLS 1339 (1406)
T ss_pred hhhhccccccCcccee-ecccchhHHHHHHHhhhcchhHHHHHHHHHHhccCccccCCCCcccCcccccc-chHHHhhcc
Confidence 3999999999988888 877 9999999999999999999999843321 0100 00 0012333446 999999999
Q ss_pred CHHHHHHHHhhhcCC
Q 017258 87 PPDVLAAHYGEEEEE 101 (374)
Q Consensus 87 ~~s~L~~H~rth~ge 101 (374)
....|.+|+|+-.++
T Consensus 1340 ~~~alqihm~~~~~~ 1354 (1406)
T KOG1146|consen 1340 GREALQIHMRSSAHR 1354 (1406)
T ss_pred hhHHHHHHHHHhhhc
Confidence 999999999985443
No 54
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=91.17 E-value=0.13 Score=51.52 Aligned_cols=21 Identities=14% Similarity=-0.118 Sum_probs=15.0
Q ss_pred cccccCCCCCCHHHHHHHHhh
Q 017258 77 DIEIYGMQGIPPDVLAAHYGE 97 (374)
Q Consensus 77 ~C~iCgK~F~~~s~L~~H~rt 97 (374)
.|..|.+.|.+.+.|.+|+|.
T Consensus 222 ~C~FC~~~FYdDDEL~~HcR~ 242 (493)
T COG5236 222 LCIFCKIYFYDDDELRRHCRL 242 (493)
T ss_pred hhhhccceecChHHHHHHHHh
Confidence 477777777777777777765
No 55
>COG5048 FOG: Zn-finger [General function prediction only]
Probab=90.50 E-value=0.087 Score=51.69 Aligned_cols=59 Identities=17% Similarity=0.152 Sum_probs=50.5
Q ss_pred CccccccCccccCCchhhHHHHh--hhccC--ccccCCCCCCCCCccccc--ccCCCCCCHHHHHHHHhhhcCCCcc
Q 017258 34 KHFKCHVCHKKLSTAGGMAIHVL--QVHKE--NVTKVPNAKPGRESTDIE--IYGMQGIPPDVLAAHYGEEEEEVPS 104 (374)
Q Consensus 34 KPfkC~~CgK~Fs~~s~L~rH~r--~hH~e--kp~~cp~~kpgr~~~~C~--iCgK~F~~~s~L~~H~rth~ge~~~ 104 (374)
..+.|..|.+.|.+...|.+|.+ .|.++ ++ +.|. .|++.|.+...+.+|...|.+....
T Consensus 288 ~~~~~~~~~~~~s~~~~l~~~~~~~~h~~~~~~~------------~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (467)
T COG5048 288 LPIKSKQCNISFSRSSPLTRHLRSVNHSGESLKP------------FSCPYSLCGKLFSRNDALKRHILLHTSISPA 352 (467)
T ss_pred cCCCCccccCCccccccccccccccccccccCCc------------eeeeccCCCccccccccccCCcccccCCCcc
Confidence 47899999999999999999999 67777 66 5555 8999999999999999998876543
No 56
>KOG3671 consensus Actin regulatory protein (Wiskott-Aldrich syndrome protein) [Signal transduction mechanisms; Cytoskeleton]
Probab=90.19 E-value=27 Score=37.00 Aligned_cols=19 Identities=21% Similarity=0.260 Sum_probs=14.8
Q ss_pred hHHHhhccCceeecccccc
Q 017258 333 MEERRMSSVKYQVHDETSQ 351 (374)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~ 351 (374)
|++|||+|=+..-.||-+.
T Consensus 541 m~ara~a~~i~~tkd~deD 559 (569)
T KOG3671|consen 541 MDARASALAIHSTKDEDED 559 (569)
T ss_pred HHHHHHhhccccccccccc
Confidence 8999999998886555443
No 57
>PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A.
Probab=89.66 E-value=0.34 Score=35.61 Aligned_cols=25 Identities=20% Similarity=0.329 Sum_probs=17.6
Q ss_pred CCCccc-cCcCCCcccChHHHHHHhh
Q 017258 8 VSSKVW-CYYCDREFDDEKILVQHQK 32 (374)
Q Consensus 8 ~gEKp~-C~~CgK~Fs~~s~Lk~H~R 32 (374)
.-+.+. |.+|+..+.+..+|++|+.
T Consensus 20 ~S~~PatCP~C~a~~~~srnLrRHle 45 (54)
T PF09237_consen 20 QSEQPATCPICGAVIRQSRNLRRHLE 45 (54)
T ss_dssp TTS--EE-TTT--EESSHHHHHHHHH
T ss_pred ccCCCCCCCcchhhccchhhHHHHHH
Confidence 345666 9999999999999999986
No 58
>KOG2482 consensus Predicted C2H2-type Zn-finger protein [Transcription]
Probab=89.50 E-value=0.18 Score=50.27 Aligned_cols=23 Identities=30% Similarity=0.885 Sum_probs=20.5
Q ss_pred CccccCcCCCcccChHHHHHHhh
Q 017258 10 SKVWCYYCDREFDDEKILVQHQK 32 (374)
Q Consensus 10 EKp~C~~CgK~Fs~~s~Lk~H~R 32 (374)
++..|-+|.|.|..+..|+.|||
T Consensus 194 ~r~~CLyCekifrdkntLkeHMr 216 (423)
T KOG2482|consen 194 ERLRCLYCEKIFRDKNTLKEHMR 216 (423)
T ss_pred hhheeeeeccccCCcHHHHHHHH
Confidence 34559999999999999999999
No 59
>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A.
Probab=89.46 E-value=0.21 Score=39.71 Aligned_cols=37 Identities=22% Similarity=0.503 Sum_probs=22.4
Q ss_pred ChHHHHHHhh---cCccccccCccccCCchhhHHHHhhhc
Q 017258 23 DEKILVQHQK---AKHFKCHVCHKKLSTAGGMAIHVLQVH 59 (374)
Q Consensus 23 ~~s~Lk~H~R---eKPfkC~~CgK~Fs~~s~L~rH~r~hH 59 (374)
....+..+.+ ...|.|.+|++.|.....|..|++.++
T Consensus 35 ~~~~~~~~~~~~~~~~~~C~~C~~~f~s~~~l~~Hm~~~~ 74 (100)
T PF12756_consen 35 DPNRLLNYLRKKVKESFRCPYCNKTFRSREALQEHMRSKH 74 (100)
T ss_dssp --------------SSEEBSSSS-EESSHHHHHHHHHHTT
T ss_pred cccccccccccccCCCCCCCccCCCCcCHHHHHHHHcCcc
Confidence 3444444544 456999999999999999999998653
No 60
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=88.60 E-value=4 Score=45.13 Aligned_cols=7 Identities=43% Similarity=0.615 Sum_probs=2.8
Q ss_pred hhhhhhc
Q 017258 362 RISESRL 368 (374)
Q Consensus 362 ~~~~~~~ 368 (374)
||+++.+
T Consensus 694 ~ilDsKt 700 (1102)
T KOG1924|consen 694 RILDSKT 700 (1102)
T ss_pred eecchHH
Confidence 3444433
No 61
>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type
Probab=88.53 E-value=0.29 Score=30.44 Aligned_cols=18 Identities=22% Similarity=0.659 Sum_probs=8.3
Q ss_pred ccccCccccCCchhhHHHH
Q 017258 37 KCHVCHKKLSTAGGMAIHV 55 (374)
Q Consensus 37 kC~~CgK~Fs~~s~L~rH~ 55 (374)
.|..|+++| ..+.|.+|+
T Consensus 4 ~C~~CgR~F-~~~~l~~H~ 21 (25)
T PF13913_consen 4 PCPICGRKF-NPDRLEKHE 21 (25)
T ss_pred cCCCCCCEE-CHHHHHHHH
Confidence 344455554 334444444
No 62
>PF13909 zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W_A.
Probab=87.17 E-value=0.4 Score=28.93 Aligned_cols=23 Identities=9% Similarity=-0.018 Sum_probs=18.0
Q ss_pred ccccccCCCCCCHHHHHHHHhhhc
Q 017258 76 TDIEIYGMQGIPPDVLAAHYGEEE 99 (374)
Q Consensus 76 ~~C~iCgK~F~~~s~L~~H~rth~ 99 (374)
|+|..|..... ...|.+|++.++
T Consensus 1 y~C~~C~y~t~-~~~l~~H~~~~H 23 (24)
T PF13909_consen 1 YKCPHCSYSTS-KSNLKRHLKRHH 23 (24)
T ss_dssp EE-SSSS-EES-HHHHHHHHHHHH
T ss_pred CCCCCCCCcCC-HHHHHHHHHhhC
Confidence 67899998877 889999999865
No 63
>smart00451 ZnF_U1 U1-like zinc finger. Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.
Probab=87.12 E-value=0.39 Score=31.39 Aligned_cols=22 Identities=18% Similarity=0.522 Sum_probs=14.7
Q ss_pred ccccccCccccCCchhhHHHHh
Q 017258 35 HFKCHVCHKKLSTAGGMAIHVL 56 (374)
Q Consensus 35 PfkC~~CgK~Fs~~s~L~rH~r 56 (374)
.|.|++|++.|.+...+..|++
T Consensus 3 ~~~C~~C~~~~~~~~~~~~H~~ 24 (35)
T smart00451 3 GFYCKLCNVTFTDEISVEAHLK 24 (35)
T ss_pred CeEccccCCccCCHHHHHHHHC
Confidence 4567777777776666666663
No 64
>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=86.46 E-value=0.42 Score=40.38 Aligned_cols=34 Identities=24% Similarity=0.508 Sum_probs=26.9
Q ss_pred CCCccccCcCCCcccChHHHHHHhhcCccccccCccccCCc
Q 017258 8 VSSKVWCYYCDREFDDEKILVQHQKAKHFKCHVCHKKLSTA 48 (374)
Q Consensus 8 ~gEKp~C~~CgK~Fs~~s~Lk~H~ReKPfkC~~CgK~Fs~~ 48 (374)
.|.|..|..||+.|-. |+ ..|-.|.+||..|.-.
T Consensus 6 lGtKR~Cp~CG~kFYD---Ln----k~PivCP~CG~~~~~~ 39 (108)
T PF09538_consen 6 LGTKRTCPSCGAKFYD---LN----KDPIVCPKCGTEFPPE 39 (108)
T ss_pred cCCcccCCCCcchhcc---CC----CCCccCCCCCCccCcc
Confidence 3677779999999954 33 4688899999998877
No 65
>COG5188 PRP9 Splicing factor 3a, subunit 3 [RNA processing and modification]
Probab=85.95 E-value=0.65 Score=46.67 Aligned_cols=24 Identities=38% Similarity=0.753 Sum_probs=19.9
Q ss_pred CCccccCcCCCcccChHHHHHHhh
Q 017258 9 SSKVWCYYCDREFDDEKILVQHQK 32 (374)
Q Consensus 9 gEKp~C~~CgK~Fs~~s~Lk~H~R 32 (374)
.+++||.+|+|.|.+...+..|..
T Consensus 236 ~~~~YC~~C~r~f~~~~VFe~Hl~ 259 (470)
T COG5188 236 FPKVYCVKCGREFSRSKVFEYHLE 259 (470)
T ss_pred ccceeeHhhhhHhhhhHHHHHHHh
Confidence 357789999999999888877765
No 66
>KOG4173 consensus Alpha-SNAP protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.61 E-value=0.24 Score=46.28 Aligned_cols=80 Identities=19% Similarity=0.241 Sum_probs=58.4
Q ss_pred cCc--CCCcccChHHHHHHhh-cCccccccCccccCCchhhHHHHhhhccCc-cccCCCCCCCCCcccc--cccCCCCCC
Q 017258 14 CYY--CDREFDDEKILVQHQK-AKHFKCHVCHKKLSTAGGMAIHVLQVHKEN-VTKVPNAKPGRESTDI--EIYGMQGIP 87 (374)
Q Consensus 14 C~~--CgK~Fs~~s~Lk~H~R-eKPfkC~~CgK~Fs~~s~L~rH~r~hH~ek-p~~cp~~kpgr~~~~C--~iCgK~F~~ 87 (374)
|++ |-+.|....++..|.. -.--.|.+|.+.|-+...|..|+.-.|..- -..+ .-|.+-|+| +.|+..|.+
T Consensus 82 cqvagc~~~~d~lD~~E~hY~~~h~~sCs~C~r~~Pt~hLLd~HI~E~HDs~Fqa~v---eRG~dMy~ClvEgCt~KFkT 158 (253)
T KOG4173|consen 82 CQVAGCCQVFDALDDYEHHYHTLHGNSCSFCKRAFPTGHLLDAHILEWHDSLFQALV---ERGQDMYQCLVEGCTEKFKT 158 (253)
T ss_pred ccccchHHHHhhhhhHHHhhhhcccchhHHHHHhCCchhhhhHHHHHHHHHHHHHHH---HcCccHHHHHHHhhhhhhhh
Confidence 887 8888888887777766 334579999999999999999986655321 0001 123445888 789999998
Q ss_pred HHHHHHHHh
Q 017258 88 PDVLAAHYG 96 (374)
Q Consensus 88 ~s~L~~H~r 96 (374)
......|+-
T Consensus 159 ~r~RkdH~I 167 (253)
T KOG4173|consen 159 SRDRKDHMI 167 (253)
T ss_pred hhhhhhHHH
Confidence 888888864
No 67
>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type
Probab=85.16 E-value=0.69 Score=28.75 Aligned_cols=19 Identities=37% Similarity=0.728 Sum_probs=16.0
Q ss_pred ccCcCCCcccChHHHHHHhh
Q 017258 13 WCYYCDREFDDEKILVQHQK 32 (374)
Q Consensus 13 ~C~~CgK~Fs~~s~Lk~H~R 32 (374)
.|.+||+.| ..+.|.+|++
T Consensus 4 ~C~~CgR~F-~~~~l~~H~~ 22 (25)
T PF13913_consen 4 PCPICGRKF-NPDRLEKHEK 22 (25)
T ss_pred cCCCCCCEE-CHHHHHHHHH
Confidence 399999999 5677899975
No 68
>KOG2482 consensus Predicted C2H2-type Zn-finger protein [Transcription]
Probab=81.56 E-value=1.4 Score=44.10 Aligned_cols=78 Identities=19% Similarity=0.249 Sum_probs=49.6
Q ss_pred hHHHHHHhh---cC--ccccccCccccC-CchhhHHHHhhhccCccccCCC----C-------CCCCCcccccccCCCCC
Q 017258 24 EKILVQHQK---AK--HFKCHVCHKKLS-TAGGMAIHVLQVHKENVTKVPN----A-------KPGRESTDIEIYGMQGI 86 (374)
Q Consensus 24 ~s~Lk~H~R---eK--PfkC~~CgK~Fs-~~s~L~rH~r~hH~ekp~~cp~----~-------kpgr~~~~C~iCgK~F~ 86 (374)
+..|.+|++ .+ .-+|.+|...+. .++....|.-..|+-.. +-+. + +..-..+.|-.|.|.|.
T Consensus 128 ~eaLeqqQ~Eredt~fslqClFCn~e~lgnRs~~l~Hlf~~H~lni-GlpDniVyvnelLehLkekL~r~~CLyCekifr 206 (423)
T KOG2482|consen 128 KEALEQQQKEREDTIFSLQCLFCNNEGLGNRSEILEHLFHVHGLNI-GLPDNIVYVNELLEHLKEKLERLRCLYCEKIFR 206 (423)
T ss_pred HHHHHHHHHHhcCCeeeeEEEEecchhcccHHHHHHHHHHHhhhcc-CCCcceeeHHHHHHHHHHHHhhheeeeeccccC
Confidence 345566666 23 346999987654 34666677766665432 2221 0 12224488999999999
Q ss_pred CHHHHHHHHhh--hcCCC
Q 017258 87 PPDVLAAHYGE--EEEEV 102 (374)
Q Consensus 87 ~~s~L~~H~rt--h~ge~ 102 (374)
++..|+.|||. |.+-+
T Consensus 207 dkntLkeHMrkK~Hrrin 224 (423)
T KOG2482|consen 207 DKNTLKEHMRKKRHRRIN 224 (423)
T ss_pred CcHHHHHHHHhccCcccC
Confidence 99999999986 44433
No 69
>TIGR02300 FYDLN_acid conserved hypothetical protein TIGR02300. Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=80.35 E-value=1.1 Score=38.98 Aligned_cols=38 Identities=13% Similarity=0.192 Sum_probs=28.5
Q ss_pred CCCccccCcCCCcccChHHHHHHhhcCccccccCccccCCchhhH
Q 017258 8 VSSKVWCYYCDREFDDEKILVQHQKAKHFKCHVCHKKLSTAGGMA 52 (374)
Q Consensus 8 ~gEKp~C~~CgK~Fs~~s~Lk~H~ReKPfkC~~CgK~Fs~~s~L~ 52 (374)
.|.|..|..||+.|-. |+ ..|-.|.+||..|.....++
T Consensus 6 lGtKr~Cp~cg~kFYD---Ln----k~p~vcP~cg~~~~~~~~~~ 43 (129)
T TIGR02300 6 LGTKRICPNTGSKFYD---LN----RRPAVSPYTGEQFPPEEALK 43 (129)
T ss_pred hCccccCCCcCccccc---cC----CCCccCCCcCCccCcchhhc
Confidence 3667779999999954 33 46889999999987664443
No 70
>KOG2186 consensus Cell growth-regulating nucleolar protein [Cell cycle control, cell division, chromosome partitioning]
Probab=80.23 E-value=0.99 Score=43.47 Aligned_cols=46 Identities=17% Similarity=0.392 Sum_probs=34.4
Q ss_pred cc-cCcCCCcccChHHHHHHhh---cCccccccCccccCCchhhHHHHhhhc
Q 017258 12 VW-CYYCDREFDDEKILVQHQK---AKHFKCHVCHKKLSTAGGMAIHVLQVH 59 (374)
Q Consensus 12 p~-C~~CgK~Fs~~s~Lk~H~R---eKPfkC~~CgK~Fs~~s~L~rH~r~hH 59 (374)
+| |..||....- -.+-+|+. ..-|.|..|++.|.+ ...+.|....+
T Consensus 3 ~FtCnvCgEsvKK-p~vekH~srCrn~~fSCIDC~k~F~~-~sYknH~kCIT 52 (276)
T KOG2186|consen 3 FFTCNVCGESVKK-PQVEKHMSRCRNAYFSCIDCGKTFER-VSYKNHTKCIT 52 (276)
T ss_pred EEehhhhhhhccc-cchHHHHHhccCCeeEEeeccccccc-chhhhhhhhcc
Confidence 45 9999987653 45666876 667999999999999 66778874443
No 71
>KOG1280 consensus Uncharacterized conserved protein containing ZZ-type Zn-finger [General function prediction only]
Probab=78.59 E-value=1.3 Score=44.49 Aligned_cols=84 Identities=17% Similarity=0.231 Sum_probs=50.5
Q ss_pred CCccccCcCCCcccChHHHHHHhhcCccccccC------ccccCCchhhHHHHhhhccCc----------cccCCCCCCC
Q 017258 9 SSKVWCYYCDREFDDEKILVQHQKAKHFKCHVC------HKKLSTAGGMAIHVLQVHKEN----------VTKVPNAKPG 72 (374)
Q Consensus 9 gEKp~C~~CgK~Fs~~s~Lk~H~ReKPfkC~~C------gK~Fs~~s~L~rH~r~hH~ek----------p~~cp~~kpg 72 (374)
.|...|.-|+|.-. ..+.|||..| ...|.....--.|...|--.. -.+|+-++..
T Consensus 6 He~v~CdgC~k~~~---------t~rrYkCL~C~DyDlC~sCyen~~tt~~H~~dHPmqcil~~~dfeL~f~Ge~i~~y~ 76 (381)
T KOG1280|consen 6 HEGVSCDGCGKTAF---------TFRRYKCLRCSDYDLCFSCYENGATTPIHDEDHPMQCILSRVDFELYFGGEPISHYD 76 (381)
T ss_pred cCCceeccccccce---------eeeeeEeeeecchhHHHHHhhcCCCCcccCCCCceeEEeeccceeeEecCccccccc
Confidence 45566999987521 1567888664 344444444444442221110 0233334555
Q ss_pred CCcccccccCCCCCCHHHHHHHHhhhcCC
Q 017258 73 RESTDIEIYGMQGIPPDVLAAHYGEEEEE 101 (374)
Q Consensus 73 r~~~~C~iCgK~F~~~s~L~~H~rth~ge 101 (374)
..+|.|.+|++.......|..|....+-+
T Consensus 77 ~qSftCPyC~~~Gfte~~f~~Hv~s~Hpd 105 (381)
T KOG1280|consen 77 PQSFTCPYCGIMGFTERQFGTHVLSQHPE 105 (381)
T ss_pred cccccCCcccccccchhHHHHHhhhcCcc
Confidence 66899999999999999999998764443
No 72
>PF06220 zf-U1: U1 zinc finger; InterPro: IPR013085 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. C2H2-type (classical) zinc fingers (Znf) were the first class to be characterised. They contain a short beta hairpin and an alpha helix (beta/beta/alpha structure), where a single zinc atom is held in place by Cys(2)His(2) (C2H2) residues in a tetrahedral array. C2H2 Znf's can be divided into three groups based on the number and pattern of fingers: triple-C2H2 (binds single ligand), multiple-adjacent-C2H2 (binds multiple ligands), and separated paired-C2H2 []. C2H2 Znf's are the most common DNA-binding motifs found in eukaryotic transcription factors, and have also been identified in prokaryotes []. Transcription factors usually contain several Znf's (each with a conserved beta/beta/alpha structure) capable of making multiple contacts along the DNA, where the C2H2 Znf motifs recognise DNA sequences by binding to the major groove of DNA via a short alpha-helix in the Znf, the Znf spanning 3-4 bases of the DNA []. C2H2 Znf's can also bind to RNA and protein targets []. This entry represents a C2H2-type zinc finger motif found in several U1 small nuclear ribonucleoprotein C (U1-C) proteins. Some proteins contain multiple copies of this motif. The U1 small nuclear ribonucleoprotein (U1 snRNP) binds to the pre-mRNA 5' splice site at early stages of spliceosome assembly. Recruitment of U1 to a class of weak 5' splice site is promoted by binding of the protein TIA-1 to uridine-rich sequences immediately downstream from the 5' splice site. Binding of TIA-1 in the vicinity of a 5' splice site helps to stabilise U1 snRNP recruitment, at least in part, via a direct interaction with U1-C, thus providing one molecular mechanism for the function of this splicing regulator []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2VRD_A.
Probab=77.10 E-value=1.7 Score=29.81 Aligned_cols=22 Identities=32% Similarity=0.824 Sum_probs=10.3
Q ss_pred ccccCcCCCccc-Ch-HHHHHHhh
Q 017258 11 KVWCYYCDREFD-DE-KILVQHQK 32 (374)
Q Consensus 11 Kp~C~~CgK~Fs-~~-s~Lk~H~R 32 (374)
|+||++|++.|. +. ...+.|.+
T Consensus 3 ryyCdyC~~~~~~d~~~~Rk~H~~ 26 (38)
T PF06220_consen 3 RYYCDYCKKYLTHDSPSIRKQHER 26 (38)
T ss_dssp S-B-TTT--B-S--SHHHHHHHT-
T ss_pred CeecccccceecCCChHHHHHhhc
Confidence 577999999994 33 45577765
No 73
>KOG2186 consensus Cell growth-regulating nucleolar protein [Cell cycle control, cell division, chromosome partitioning]
Probab=76.59 E-value=1.3 Score=42.73 Aligned_cols=20 Identities=10% Similarity=-0.247 Sum_probs=10.2
Q ss_pred ccccccCCCCCCHHHHHHHHh
Q 017258 76 TDIEIYGMQGIPPDVLAAHYG 96 (374)
Q Consensus 76 ~~C~iCgK~F~~~s~L~~H~r 96 (374)
|.|--|++.|.. ..+..|..
T Consensus 30 fSCIDC~k~F~~-~sYknH~k 49 (276)
T KOG2186|consen 30 FSCIDCGKTFER-VSYKNHTK 49 (276)
T ss_pred eEEeeccccccc-chhhhhhh
Confidence 555555555555 34445543
No 74
>PF05443 ROS_MUCR: ROS/MUCR transcriptional regulator protein; InterPro: IPR008807 This family consists of several ROS/MUCR transcriptional regulator proteins. The ros chromosomal gene is present in octopine and nopaline strains of Agrobacterium tumefaciens as well as in Rhizobium meliloti (Sinorhizobium meliloti). This gene encodes a 15.5 kDa protein that specifically represses the virC and virD operons in the virulence region of the Ti plasmid [] and is necessary for succinoglycan production []. S. meliloti can produce two types of acidic exopolysaccharides, succinoglycan and galactoglucan, that are interchangeable for infection of Medicago sativa (Alfalfa) nodules. MucR from S. meliloti acts as a transcriptional repressor that blocks the expression of the exp genes responsible for galactoglucan production therefore allowing the exclusive production of succinoglycan [].; GO: 0003677 DNA binding, 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2JSP_A.
Probab=75.11 E-value=1.3 Score=38.85 Aligned_cols=27 Identities=26% Similarity=0.376 Sum_probs=17.3
Q ss_pred CccccccCccccCCchhhHHHHhhhccCcc
Q 017258 34 KHFKCHVCHKKLSTAGGMAIHVLQVHKENV 63 (374)
Q Consensus 34 KPfkC~~CgK~Fs~~s~L~rH~r~hH~ekp 63 (374)
.--.|..|||.|+. |+||++.|||-.+
T Consensus 71 d~i~clecGk~~k~---LkrHL~~~~gltp 97 (132)
T PF05443_consen 71 DYIICLECGKKFKT---LKRHLRTHHGLTP 97 (132)
T ss_dssp S-EE-TBT--EESB---HHHHHHHTT-S-H
T ss_pred CeeEEccCCcccch---HHHHHHHccCCCH
Confidence 34569999999987 5899999998764
No 75
>PF12013 DUF3505: Protein of unknown function (DUF3505); InterPro: IPR022698 This family of proteins is functionally uncharacterised. This protein is found in eukaryotes. Proteins in this family are typically between 247 to 1018 amino acids in length. This region contains two segments that are likely to be C2H2 zinc binding domains.
Probab=74.87 E-value=2.5 Score=35.15 Aligned_cols=30 Identities=13% Similarity=0.176 Sum_probs=25.5
Q ss_pred CCCCcccc----cccCCCCCCHHHHHHHHhhhcC
Q 017258 71 PGRESTDI----EIYGMQGIPPDVLAAHYGEEEE 100 (374)
Q Consensus 71 pgr~~~~C----~iCgK~F~~~s~L~~H~rth~g 100 (374)
+..++|.| ..|+..+.....+.+|.+.++|
T Consensus 76 p~~~G~~C~~~~~~C~y~~~~~~~m~~H~~~~Hg 109 (109)
T PF12013_consen 76 PVYDGYRCQCDPPHCGYITRSKKTMRKHWRKEHG 109 (109)
T ss_pred CCCCCeeeecCCCCCCcEeccHHHHHHHHHHhcC
Confidence 33467999 9999999999999999998764
No 76
>COG0068 HypF Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones]
Probab=74.27 E-value=0.79 Score=49.96 Aligned_cols=44 Identities=20% Similarity=0.444 Sum_probs=26.7
Q ss_pred cCcCCCcccChHHHHHHhh---cCccc-cccCccccCCchhhHHHHhhhccCc
Q 017258 14 CYYCDREFDDEKILVQHQK---AKHFK-CHVCHKKLSTAGGMAIHVLQVHKEN 62 (374)
Q Consensus 14 C~~CgK~Fs~~s~Lk~H~R---eKPfk-C~~CgK~Fs~~s~L~rH~r~hH~ek 62 (374)
|..||-+|+-...|=--.. .+.|. |..|.+.|....+ |..|.+-
T Consensus 126 CT~CGPRfTIi~alPYDR~nTsM~~F~lC~~C~~EY~dP~n-----RRfHAQp 173 (750)
T COG0068 126 CTNCGPRFTIIEALPYDRENTSMADFPLCPFCDKEYKDPLN-----RRFHAQP 173 (750)
T ss_pred cCCCCcceeeeccCCCCcccCccccCcCCHHHHHHhcCccc-----ccccccc
Confidence 8888888876554321111 44554 8888887777665 4455553
No 77
>PF02892 zf-BED: BED zinc finger; InterPro: IPR003656 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents predicted BED-type zinc finger domains. The BED finger which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain []. Some proteins known to contain a BED domain include animal, plant and fungi AC1 and Hobo-like transposases; Caenorhabditis elegans Dpy-20 protein, a predicted cuticular gene transcriptional regulator; Drosophila BEAF (boundary element-associated factor), thought to be involved in chromatin insulation; Drosophila DREF, a transcriptional regulator for S-phase genes; and tobacco 3AF1 and tomato E4/E8-BP1, light- and ethylene-regulated DNA binding proteins that contain two BED fingers. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003677 DNA binding; PDB: 2DJR_A 2CT5_A.
Probab=73.93 E-value=1.8 Score=29.98 Aligned_cols=24 Identities=25% Similarity=0.520 Sum_probs=11.3
Q ss_pred CccccccCccccCCc----hhhHHHHhh
Q 017258 34 KHFKCHVCHKKLSTA----GGMAIHVLQ 57 (374)
Q Consensus 34 KPfkC~~CgK~Fs~~----s~L~rH~r~ 57 (374)
.-.+|.+|++.|... ++|.+|++.
T Consensus 15 ~~a~C~~C~~~~~~~~~~ts~l~~HL~~ 42 (45)
T PF02892_consen 15 KKAKCKYCGKVIKYSSGGTSNLKRHLKK 42 (45)
T ss_dssp S-EEETTTTEE-----SSTHHHHHHHHH
T ss_pred CeEEeCCCCeEEeeCCCcHHHHHHhhhh
Confidence 334566666665553 566666643
No 78
>PF04959 ARS2: Arsenite-resistance protein 2; InterPro: IPR007042 This entry represents Arsenite-resistance protein 2 (also known as Serrate RNA effector molecule homolog) which is thought to play a role in arsenite resistance [], although does not directly confer arsenite resistance but rather modulates arsenic sensitivity []. Arsenite is a carcinogenic compound which can act as a comutagen by inhibiting DNA repair. It is also involved in cell cycle progression at S phase. ; PDB: 3AX1_A.
Probab=73.65 E-value=1.1 Score=42.32 Aligned_cols=30 Identities=20% Similarity=0.500 Sum_probs=22.2
Q ss_pred cCccccccCccccCCchhhHHHHhhhccCc
Q 017258 33 AKHFKCHVCHKKLSTAGGMAIHVLQVHKEN 62 (374)
Q Consensus 33 eKPfkC~~CgK~Fs~~s~L~rH~r~hH~ek 62 (374)
+..|.|..|+|.|.-....++|+...|.++
T Consensus 75 ~~K~~C~lc~KlFkg~eFV~KHI~nKH~e~ 104 (214)
T PF04959_consen 75 EDKWRCPLCGKLFKGPEFVRKHIFNKHPEK 104 (214)
T ss_dssp SEEEEE-SSS-EESSHHHHHHHHHHH-HHH
T ss_pred CCEECCCCCCcccCChHHHHHHHhhcCHHH
Confidence 345888888888888888888888888876
No 79
>smart00531 TFIIE Transcription initiation factor IIE.
Probab=73.45 E-value=1.4 Score=38.93 Aligned_cols=19 Identities=21% Similarity=0.445 Sum_probs=14.3
Q ss_pred CccccccCccccCCchhhH
Q 017258 34 KHFKCHVCHKKLSTAGGMA 52 (374)
Q Consensus 34 KPfkC~~CgK~Fs~~s~L~ 52 (374)
.-|.|..|+++|.....+.
T Consensus 98 ~~Y~Cp~C~~~y~~~ea~~ 116 (147)
T smart00531 98 AYYKCPNCQSKYTFLEANQ 116 (147)
T ss_pred cEEECcCCCCEeeHHHHHH
Confidence 3588999999988766544
No 80
>COG4888 Uncharacterized Zn ribbon-containing protein [General function prediction only]
Probab=73.38 E-value=0.73 Score=38.35 Aligned_cols=15 Identities=27% Similarity=0.645 Sum_probs=9.0
Q ss_pred cCccccccCccccCC
Q 017258 33 AKHFKCHVCHKKLST 47 (374)
Q Consensus 33 eKPfkC~~CgK~Fs~ 47 (374)
+|-|.|..|+..-..
T Consensus 20 ~k~FtCp~Cghe~vs 34 (104)
T COG4888 20 PKTFTCPRCGHEKVS 34 (104)
T ss_pred CceEecCccCCeeee
Confidence 566777777654333
No 81
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=72.27 E-value=0.84 Score=41.60 Aligned_cols=38 Identities=42% Similarity=0.587 Sum_probs=29.4
Q ss_pred HHHhhccCceeecccccccchhHHHHHhh----------hhhhhcccccC
Q 017258 334 EERRMSSVKYQVHDETSQMSSIDAAIDRR----------ISESRLAGRMA 373 (374)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~ 373 (374)
+||=|+|--+..--|+. -.||-.|||| |+||||||-|+
T Consensus 40 ~e~gmsl~ef~~~AE~~--p~iD~~iD~rq~e~a~~~nvVlegrLA~Wi~ 87 (179)
T COG1102 40 RERGMSLEEFSRYAEED--PEIDKEIDRRQKELAKEGNVVLEGRLAGWIV 87 (179)
T ss_pred HHcCCCHHHHHHHHhcC--chhhHHHHHHHHHHHHcCCeEEhhhhHHHHh
Confidence 56678887776666654 5799999999 46899999775
No 82
>PTZ00303 phosphatidylinositol kinase; Provisional
Probab=71.88 E-value=2.1 Score=47.16 Aligned_cols=34 Identities=21% Similarity=0.392 Sum_probs=24.0
Q ss_pred cCcCCCcccChHHHHHHhhcCccccccCccccCCchh
Q 017258 14 CYYCDREFDDEKILVQHQKAKHFKCHVCHKKLSTAGG 50 (374)
Q Consensus 14 C~~CgK~Fs~~s~Lk~H~ReKPfkC~~CgK~Fs~~s~ 50 (374)
|..|++.|.....+. -.|.|.|..||+.|+..-.
T Consensus 463 C~~C~kkFfSlsK~L---~~RKHHCRkCGrVFC~~CS 496 (1374)
T PTZ00303 463 CPSCGRAFISLSRPL---GTRAHHCRSCGIRLCVFCI 496 (1374)
T ss_pred ccCcCCccccccccc---ccccccccCCccccCcccc
Confidence 999999997542100 1456779999999888754
No 83
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=71.69 E-value=0.9 Score=42.71 Aligned_cols=37 Identities=19% Similarity=0.449 Sum_probs=26.3
Q ss_pred cccCcCCCcccChHHHHHHhh--------------cC-----ccccccCccccCCc
Q 017258 12 VWCYYCDREFDDEKILVQHQK--------------AK-----HFKCHVCHKKLSTA 48 (374)
Q Consensus 12 p~C~~CgK~Fs~~s~Lk~H~R--------------eK-----PfkC~~CgK~Fs~~ 48 (374)
..|.+|++.|..+.-+....| .- -..|..||.+|...
T Consensus 6 ~~CPvC~~~F~~~~vrs~~~r~~~~d~D~~~~Y~~vnP~~Y~V~vCP~CgyA~~~~ 61 (214)
T PF09986_consen 6 ITCPVCGKEFKTKKVRSGKIRVIRRDSDFCPRYKGVNPLFYEVWVCPHCGYAAFEE 61 (214)
T ss_pred eECCCCCCeeeeeEEEcCCceEeeecCCCccccCCCCCeeeeEEECCCCCCccccc
Confidence 349999999998776666555 11 12699999887765
No 84
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=70.87 E-value=1.2 Score=41.97 Aligned_cols=55 Identities=18% Similarity=0.245 Sum_probs=33.0
Q ss_pred cCccccccCccccCCchhhHHHHhhhccCccccCCC---CCCC-CCcccccccCCCCCCH
Q 017258 33 AKHFKCHVCHKKLSTAGGMAIHVLQVHKENVTKVPN---AKPG-RESTDIEIYGMQGIPP 88 (374)
Q Consensus 33 eKPfkC~~CgK~Fs~~s~L~rH~r~hH~ekp~~cp~---~kpg-r~~~~C~iCgK~F~~~ 88 (374)
+|...|.+|++.|.++.-+.+..|....+.- -|+. ..+. -.-..|..||..|...
T Consensus 3 ~k~~~CPvC~~~F~~~~vrs~~~r~~~~d~D-~~~~Y~~vnP~~Y~V~vCP~CgyA~~~~ 61 (214)
T PF09986_consen 3 DKKITCPVCGKEFKTKKVRSGKIRVIRRDSD-FCPRYKGVNPLFYEVWVCPHCGYAAFEE 61 (214)
T ss_pred CCceECCCCCCeeeeeEEEcCCceEeeecCC-CccccCCCCCeeeeEEECCCCCCccccc
Confidence 4678999999999998777766654332221 1111 0000 0114588999877654
No 85
>COG4049 Uncharacterized protein containing archaeal-type C2H2 Zn-finger [General function prediction only]
Probab=70.43 E-value=2.1 Score=32.12 Aligned_cols=24 Identities=21% Similarity=0.444 Sum_probs=13.1
Q ss_pred CCccc-cCcCCCcccChHHHHHHhh
Q 017258 9 SSKVW-CYYCDREFDDEKILVQHQK 32 (374)
Q Consensus 9 gEKp~-C~~CgK~Fs~~s~Lk~H~R 32 (374)
||.+. |.-|++.|.+...+.+|..
T Consensus 14 GE~~lrCPRC~~~FR~~K~Y~RHVN 38 (65)
T COG4049 14 GEEFLRCPRCGMVFRRRKDYIRHVN 38 (65)
T ss_pred CceeeeCCchhHHHHHhHHHHHHhh
Confidence 44444 6666655555555555543
No 86
>KOG4173 consensus Alpha-SNAP protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=70.36 E-value=1.4 Score=41.31 Aligned_cols=46 Identities=28% Similarity=0.712 Sum_probs=38.9
Q ss_pred cCcCCCcccChHHHHHHhh-----------cC---cccccc--CccccCCchhhHHHHhhhc
Q 017258 14 CYYCDREFDDEKILVQHQK-----------AK---HFKCHV--CHKKLSTAGGMAIHVLQVH 59 (374)
Q Consensus 14 C~~CgK~Fs~~s~Lk~H~R-----------eK---PfkC~~--CgK~Fs~~s~L~rH~r~hH 59 (374)
|.+|.|.|.....|..|+. || =|.|.+ |+-+|.+.-.-++|+-..|
T Consensus 109 Cs~C~r~~Pt~hLLd~HI~E~HDs~Fqa~veRG~dMy~ClvEgCt~KFkT~r~RkdH~I~~H 170 (253)
T KOG4173|consen 109 CSFCKRAFPTGHLLDAHILEWHDSLFQALVERGQDMYQCLVEGCTEKFKTSRDRKDHMIRMH 170 (253)
T ss_pred hHHHHHhCCchhhhhHHHHHHHHHHHHHHHHcCccHHHHHHHhhhhhhhhhhhhhhHHHHhc
Confidence 9999999999999999977 45 288987 9999999988888875444
No 87
>TIGR00622 ssl1 transcription factor ssl1. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=68.91 E-value=6 Score=33.73 Aligned_cols=75 Identities=11% Similarity=0.024 Sum_probs=43.9
Q ss_pred ccc-cCcCCCcccChHHHHHHhh----cCcc------------ccccCccccCCchhhHHHHhhhccCccccCCCCCCCC
Q 017258 11 KVW-CYYCDREFDDEKILVQHQK----AKHF------------KCHVCHKKLSTAGGMAIHVLQVHKENVTKVPNAKPGR 73 (374)
Q Consensus 11 Kp~-C~~CgK~Fs~~s~Lk~H~R----eKPf------------kC~~CgK~Fs~~s~L~rH~r~hH~ekp~~cp~~kpgr 73 (374)
-+. |.+||-......+|.|... -++| .|--|.+.|........-. .. ..
T Consensus 14 LP~~CpiCgLtLVss~HLARSyHHLfPl~~f~ev~~~~~~~~~~C~~C~~~f~~~~~~~~~~--~~------------~~ 79 (112)
T TIGR00622 14 LPVECPICGLTLILSTHLARSYHHLFPLKAFQEIPLEEYNGSRFCFGCQGPFPKPPVSPFDE--LK------------DS 79 (112)
T ss_pred CCCcCCcCCCEEeccchHHHhhhccCCCcccccccccccCCCCcccCcCCCCCCcccccccc--cc------------cc
Confidence 344 7777777777777766433 2222 2666777666543111000 00 01
Q ss_pred CcccccccCCCCCCHHHHHHHHhhhc
Q 017258 74 ESTDIEIYGMQGIPPDVLAAHYGEEE 99 (374)
Q Consensus 74 ~~~~C~iCgK~F~~~s~L~~H~rth~ 99 (374)
..|+|..|++.|-..-+.-.|...|.
T Consensus 80 ~~y~C~~C~~~FC~dCD~fiHe~Lh~ 105 (112)
T TIGR00622 80 HRYVCAVCKNVFCVDCDVFVHESLHC 105 (112)
T ss_pred cceeCCCCCCccccccchhhhhhccC
Confidence 12889999999988788888876664
No 88
>COG4957 Predicted transcriptional regulator [Transcription]
Probab=68.17 E-value=2.1 Score=37.53 Aligned_cols=24 Identities=17% Similarity=0.115 Sum_probs=20.2
Q ss_pred ccccCccccCCchhhHHHHhhhccCcc
Q 017258 37 KCHVCHKKLSTAGGMAIHVLQVHKENV 63 (374)
Q Consensus 37 kC~~CgK~Fs~~s~L~rH~r~hH~ekp 63 (374)
.|..|||+|++ |+||+++|++-.+
T Consensus 78 icLEDGkkfKS---LKRHL~t~~gmTP 101 (148)
T COG4957 78 ICLEDGKKFKS---LKRHLTTHYGLTP 101 (148)
T ss_pred EEeccCcchHH---HHHHHhcccCCCH
Confidence 58889999875 8999999998764
No 89
>PRK06266 transcription initiation factor E subunit alpha; Validated
Probab=67.63 E-value=3.3 Score=37.97 Aligned_cols=18 Identities=28% Similarity=0.621 Sum_probs=14.4
Q ss_pred CccccccCccccCCchhh
Q 017258 34 KHFKCHVCHKKLSTAGGM 51 (374)
Q Consensus 34 KPfkC~~CgK~Fs~~s~L 51 (374)
.-|.|..|+++|+..+.+
T Consensus 116 ~~Y~Cp~C~~rytf~eA~ 133 (178)
T PRK06266 116 MFFFCPNCHIRFTFDEAM 133 (178)
T ss_pred CEEECCCCCcEEeHHHHh
Confidence 458898899988888775
No 90
>smart00614 ZnF_BED BED zinc finger. DNA-binding domain in chromatin-boundary-element-binding proteins and transposases
Probab=67.37 E-value=3.5 Score=29.58 Aligned_cols=19 Identities=37% Similarity=0.716 Sum_probs=9.8
Q ss_pred cccCccccCCc-----hhhHHHHh
Q 017258 38 CHVCHKKLSTA-----GGMAIHVL 56 (374)
Q Consensus 38 C~~CgK~Fs~~-----s~L~rH~r 56 (374)
|.+|++.+... ++|.+|++
T Consensus 21 C~~C~~~l~~~~~~gTs~L~rHl~ 44 (50)
T smart00614 21 CKYCGKKLSRSSKGGTSNLRRHLR 44 (50)
T ss_pred ecCCCCEeeeCCCCCcHHHHHHHH
Confidence 44444444333 46666665
No 91
>KOG2785 consensus C2H2-type Zn-finger protein [General function prediction only]
Probab=66.85 E-value=4.9 Score=40.88 Aligned_cols=21 Identities=19% Similarity=0.434 Sum_probs=18.2
Q ss_pred cc-cCcCCCcccChHHHHHHhh
Q 017258 12 VW-CYYCDREFDDEKILVQHQK 32 (374)
Q Consensus 12 p~-C~~CgK~Fs~~s~Lk~H~R 32 (374)
+. |-+|++.|.....-..||.
T Consensus 166 Pt~CLfC~~~~k~~e~~~~HM~ 187 (390)
T KOG2785|consen 166 PTDCLFCDKKSKSLEENLKHMF 187 (390)
T ss_pred CcceeecCCCcccHHHHHHHHh
Confidence 35 9999999999888888887
No 92
>PRK00464 nrdR transcriptional regulator NrdR; Validated
Probab=66.81 E-value=1.4 Score=39.64 Aligned_cols=41 Identities=15% Similarity=0.366 Sum_probs=25.0
Q ss_pred ccCcCCCcccC---hHHHHH--HhhcCccccccCccccCCchhhHHH
Q 017258 13 WCYYCDREFDD---EKILVQ--HQKAKHFKCHVCHKKLSTAGGMAIH 54 (374)
Q Consensus 13 ~C~~CgK~Fs~---~s~Lk~--H~ReKPfkC~~CgK~Fs~~s~L~rH 54 (374)
.|.+||..+.. ...+.. +. .|.++|..||++|..-..+..=
T Consensus 2 ~cp~c~~~~~~~~~s~~~~~~~~~-~~~~~c~~c~~~f~~~e~~~~~ 47 (154)
T PRK00464 2 RCPFCGHPDTRVIDSRPAEDGNAI-RRRRECLACGKRFTTFERVELV 47 (154)
T ss_pred cCCCCCCCCCEeEeccccCCCCce-eeeeeccccCCcceEeEeccCc
Confidence 39999976631 111111 11 3348999999999886655433
No 93
>TIGR00373 conserved hypothetical protein TIGR00373. This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain.
Probab=65.22 E-value=3.6 Score=36.88 Aligned_cols=19 Identities=16% Similarity=0.272 Sum_probs=14.9
Q ss_pred CccccccCccccCCchhhH
Q 017258 34 KHFKCHVCHKKLSTAGGMA 52 (374)
Q Consensus 34 KPfkC~~CgK~Fs~~s~L~ 52 (374)
.-|.|..|+.+|+....+.
T Consensus 108 ~~Y~Cp~c~~r~tf~eA~~ 126 (158)
T TIGR00373 108 MFFICPNMCVRFTFNEAME 126 (158)
T ss_pred CeEECCCCCcEeeHHHHHH
Confidence 4578888888888888774
No 94
>KOG2593 consensus Transcription initiation factor IIE, alpha subunit [Transcription]
Probab=65.20 E-value=2.8 Score=43.28 Aligned_cols=20 Identities=20% Similarity=0.552 Sum_probs=17.4
Q ss_pred cCccccccCccccCCchhhH
Q 017258 33 AKHFKCHVCHKKLSTAGGMA 52 (374)
Q Consensus 33 eKPfkC~~CgK~Fs~~s~L~ 52 (374)
...|+|..|.++|.....|+
T Consensus 126 ~~~Y~Cp~C~kkyt~Lea~~ 145 (436)
T KOG2593|consen 126 VAGYVCPNCQKKYTSLEALQ 145 (436)
T ss_pred cccccCCccccchhhhHHHH
Confidence 45799999999999988875
No 95
>KOG3408 consensus U1-like Zn-finger-containing protein, probabl erole in RNA processing/splicing [RNA processing and modification]
Probab=64.49 E-value=3.1 Score=35.91 Aligned_cols=22 Identities=23% Similarity=0.477 Sum_probs=12.7
Q ss_pred cccccCccccCCchhhHHHHhh
Q 017258 36 FKCHVCHKKLSTAGGMAIHVLQ 57 (374)
Q Consensus 36 fkC~~CgK~Fs~~s~L~rH~r~ 57 (374)
|-|..|.+-|.....|..|.++
T Consensus 58 fyCi~CaRyFi~~~~l~~H~kt 79 (129)
T KOG3408|consen 58 FYCIECARYFIDAKALKTHFKT 79 (129)
T ss_pred eehhhhhhhhcchHHHHHHHhc
Confidence 5555666666666666555543
No 96
>COG4049 Uncharacterized protein containing archaeal-type C2H2 Zn-finger [General function prediction only]
Probab=63.38 E-value=2.6 Score=31.59 Aligned_cols=29 Identities=17% Similarity=0.305 Sum_probs=25.1
Q ss_pred cCccccccCccccCCchhhHHHHhhhccC
Q 017258 33 AKHFKCHVCHKKLSTAGGMAIHVLQVHKE 61 (374)
Q Consensus 33 eKPfkC~~CgK~Fs~~s~L~rH~r~hH~e 61 (374)
|-=++|.-||+-|.+..+..+|+...|+-
T Consensus 15 E~~lrCPRC~~~FR~~K~Y~RHVNKaH~~ 43 (65)
T COG4049 15 EEFLRCPRCGMVFRRRKDYIRHVNKAHGW 43 (65)
T ss_pred ceeeeCCchhHHHHHhHHHHHHhhHHhhh
Confidence 55689999999999999999999777764
No 97
>KOG2785 consensus C2H2-type Zn-finger protein [General function prediction only]
Probab=63.03 E-value=7.5 Score=39.62 Aligned_cols=62 Identities=13% Similarity=0.070 Sum_probs=45.2
Q ss_pred cccccCccccCCchhhHHHHhhhccCcc----ccCCC-------CCCCCCcccccccC---CCCCCHHHHHHHHhh
Q 017258 36 FKCHVCHKKLSTAGGMAIHVLQVHKENV----TKVPN-------AKPGRESTDIEIYG---MQGIPPDVLAAHYGE 97 (374)
Q Consensus 36 fkC~~CgK~Fs~~s~L~rH~r~hH~ekp----~~cp~-------~kpgr~~~~C~iCg---K~F~~~s~L~~H~rt 97 (374)
-.|.+|++.|.....-..|+..+|+=.. |-... +......|.|-.|. +.|..-...++||+.
T Consensus 167 t~CLfC~~~~k~~e~~~~HM~~~HgffIPdreYL~D~~GLl~YLgeKV~~~~~CL~CN~~~~~f~sleavr~HM~~ 242 (390)
T KOG2785|consen 167 TDCLFCDKKSKSLEENLKHMFKEHGFFIPDREYLTDEKGLLKYLGEKVGIGFICLFCNELGRPFSSLEAVRAHMRD 242 (390)
T ss_pred cceeecCCCcccHHHHHHHHhhccCCcCCchHhhhchhHHHHHHHHHhccCceEEEeccccCcccccHHHHHHHhh
Confidence 3599999999999999999988887432 11110 11223457888888 889888899999975
No 98
>COG2331 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=62.52 E-value=3.6 Score=32.64 Aligned_cols=30 Identities=27% Similarity=0.627 Sum_probs=22.3
Q ss_pred cCcCCCcccChHHHHHHhhcCcc-ccccCccccCC
Q 017258 14 CYYCDREFDDEKILVQHQKAKHF-KCHVCHKKLST 47 (374)
Q Consensus 14 C~~CgK~Fs~~s~Lk~H~ReKPf-kC~~CgK~Fs~ 47 (374)
|..|+..| .+.+|+++-++ .|..|+.+|++
T Consensus 15 c~~cg~~~----dvvq~~~ddplt~ce~c~a~~kk 45 (82)
T COG2331 15 CTECGNRF----DVVQAMTDDPLTTCEECGARLKK 45 (82)
T ss_pred ecccchHH----HHHHhcccCccccChhhChHHHH
Confidence 99999776 57788886665 59999865443
No 99
>PF05443 ROS_MUCR: ROS/MUCR transcriptional regulator protein; InterPro: IPR008807 This family consists of several ROS/MUCR transcriptional regulator proteins. The ros chromosomal gene is present in octopine and nopaline strains of Agrobacterium tumefaciens as well as in Rhizobium meliloti (Sinorhizobium meliloti). This gene encodes a 15.5 kDa protein that specifically represses the virC and virD operons in the virulence region of the Ti plasmid [] and is necessary for succinoglycan production []. S. meliloti can produce two types of acidic exopolysaccharides, succinoglycan and galactoglucan, that are interchangeable for infection of Medicago sativa (Alfalfa) nodules. MucR from S. meliloti acts as a transcriptional repressor that blocks the expression of the exp genes responsible for galactoglucan production therefore allowing the exclusive production of succinoglycan [].; GO: 0003677 DNA binding, 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2JSP_A.
Probab=61.76 E-value=3.2 Score=36.32 Aligned_cols=29 Identities=14% Similarity=0.003 Sum_probs=18.6
Q ss_pred cccccccCCCCCCHHHHHHHHhhhcCCCcccc
Q 017258 75 STDIEIYGMQGIPPDVLAAHYGEEEEEVPSKM 106 (374)
Q Consensus 75 ~~~C~iCgK~F~~~s~L~~H~rth~ge~~~k~ 106 (374)
...|-+|||.|.. |++|+++|+|..+.+.
T Consensus 72 ~i~clecGk~~k~---LkrHL~~~~gltp~eY 100 (132)
T PF05443_consen 72 YIICLECGKKFKT---LKRHLRTHHGLTPEEY 100 (132)
T ss_dssp -EE-TBT--EESB---HHHHHHHTT-S-HHHH
T ss_pred eeEEccCCcccch---HHHHHHHccCCCHHHH
Confidence 3779999999876 5899999988876543
No 100
>PRK04023 DNA polymerase II large subunit; Validated
Probab=61.26 E-value=7.6 Score=44.23 Aligned_cols=23 Identities=22% Similarity=0.255 Sum_probs=13.4
Q ss_pred cccCCCCCCCCCcccccccCCCC
Q 017258 63 VTKVPNAKPGRESTDIEIYGMQG 85 (374)
Q Consensus 63 p~~cp~~kpgr~~~~C~iCgK~F 85 (374)
.+.|+.|-.....+.|..||..-
T Consensus 651 i~fCP~CG~~~~~y~CPKCG~El 673 (1121)
T PRK04023 651 VYRCPRCGIEVEEDECEKCGREP 673 (1121)
T ss_pred ceeCccccCcCCCCcCCCCCCCC
Confidence 34666664433347788887543
No 101
>PTZ00255 60S ribosomal protein L37a; Provisional
Probab=60.69 E-value=5.6 Score=32.59 Aligned_cols=12 Identities=25% Similarity=0.711 Sum_probs=9.6
Q ss_pred cCccccccCccc
Q 017258 33 AKHFKCHVCHKK 44 (374)
Q Consensus 33 eKPfkC~~CgK~ 44 (374)
...|.|.+|++.
T Consensus 34 ~a~y~CpfCgk~ 45 (90)
T PTZ00255 34 HAKYFCPFCGKH 45 (90)
T ss_pred hCCccCCCCCCC
Confidence 667999999864
No 102
>PF09332 Mcm10: Mcm10 replication factor; InterPro: IPR015411 Mcm10 is a eukaryotic DNA replication factor that regulates the stability and chromatin association of DNA polymerase alpha []. ; PDB: 2KWQ_A.
Probab=59.72 E-value=2.9 Score=42.20 Aligned_cols=34 Identities=18% Similarity=0.405 Sum_probs=15.3
Q ss_pred cCcCCCcccChHHHHHHhh---------cCccccccCccccCC
Q 017258 14 CYYCDREFDDEKILVQHQK---------AKHFKCHVCHKKLST 47 (374)
Q Consensus 14 C~~CgK~Fs~~s~Lk~H~R---------eKPfkC~~CgK~Fs~ 47 (374)
|..|+.++.....+..-.+ .|=|+|..|+++...
T Consensus 255 C~~C~yt~~~~~~~C~~~~H~l~~~~a~KRFFkC~~C~~Rt~s 297 (344)
T PF09332_consen 255 CKQCKYTAFKPSDRCKEEGHPLKWHDAVKRFFKCKDCGNRTIS 297 (344)
T ss_dssp ETTT--EESS--HHHHHTT--EEEEEEE-EEEE-T-TS-EEEE
T ss_pred cCCCCCcccCcchhHHhcCCceEEeeeeeeeEECCCCCCeeee
Confidence 8888777665555443222 334678888876544
No 103
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=57.55 E-value=8.4 Score=42.71 Aligned_cols=21 Identities=5% Similarity=-0.095 Sum_probs=12.2
Q ss_pred ccCCCCCC-CCCcccccccCCC
Q 017258 64 TKVPNAKP-GRESTDIEIYGMQ 84 (374)
Q Consensus 64 ~~cp~~kp-gr~~~~C~iCgK~ 84 (374)
..|+.|.- .+....|..||..
T Consensus 463 L~CH~Cg~~~~~p~~Cp~Cgs~ 484 (730)
T COG1198 463 LRCHYCGYQEPIPQSCPECGSE 484 (730)
T ss_pred eEeCCCCCCCCCCCCCCCCCCC
Confidence 45665532 2445778888755
No 104
>PF12013 DUF3505: Protein of unknown function (DUF3505); InterPro: IPR022698 This family of proteins is functionally uncharacterised. This protein is found in eukaryotes. Proteins in this family are typically between 247 to 1018 amino acids in length. This region contains two segments that are likely to be C2H2 zinc binding domains.
Probab=57.23 E-value=6.2 Score=32.78 Aligned_cols=26 Identities=19% Similarity=0.327 Sum_probs=23.8
Q ss_pred cccc----ccCccccCCchhhHHHHhhhcc
Q 017258 35 HFKC----HVCHKKLSTAGGMAIHVLQVHK 60 (374)
Q Consensus 35 PfkC----~~CgK~Fs~~s~L~rH~r~hH~ 60 (374)
-|.| ..|+..+.+...+.+|.+.+|+
T Consensus 80 G~~C~~~~~~C~y~~~~~~~m~~H~~~~Hg 109 (109)
T PF12013_consen 80 GYRCQCDPPHCGYITRSKKTMRKHWRKEHG 109 (109)
T ss_pred CeeeecCCCCCCcEeccHHHHHHHHHHhcC
Confidence 4789 8999999999999999999885
No 105
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=56.64 E-value=9.8 Score=37.62 Aligned_cols=59 Identities=17% Similarity=0.146 Sum_probs=36.2
Q ss_pred cCccccccCccccCCchhhHHHHhhhccCccccCCCC--CCCCCcccccccCC----CCCCHHHHHHHHhhhc
Q 017258 33 AKHFKCHVCHKKLSTAGGMAIHVLQVHKENVTKVPNA--KPGRESTDIEIYGM----QGIPPDVLAAHYGEEE 99 (374)
Q Consensus 33 eKPfkC~~CgK~Fs~~s~L~rH~r~hH~ekp~~cp~~--kpgr~~~~C~iCgK----~F~~~s~L~~H~rth~ 99 (374)
.-||+|.+|++.|.+. .++.-+.|-|..| +..++.-.|-+|++ .|.....|..-+..+.
T Consensus 239 ~~Pf~c~icr~~f~~p--------Vvt~c~h~fc~~ca~~~~qk~~~c~vC~~~t~g~~~~akeL~~~L~~kk 303 (313)
T KOG1813|consen 239 LLPFKCFICRKYFYRP--------VVTKCGHYFCEVCALKPYQKGEKCYVCSQQTHGSFNVAKELLVSLKLKK 303 (313)
T ss_pred cCCccccccccccccc--------hhhcCCceeehhhhccccccCCcceecccccccccchHHHHHHHHHhhh
Confidence 3589999999988774 2333333444443 45556677888875 3455556666655443
No 106
>PF13717 zinc_ribbon_4: zinc-ribbon domain
Probab=56.29 E-value=4.9 Score=27.11 Aligned_cols=31 Identities=16% Similarity=0.597 Sum_probs=15.8
Q ss_pred cCcCCCcccChHHHHHHhhcCccccccCcccc
Q 017258 14 CYYCDREFDDEKILVQHQKAKHFKCHVCHKKL 45 (374)
Q Consensus 14 C~~CgK~Fs~~s~Lk~H~ReKPfkC~~CgK~F 45 (374)
|..|+..|.-...... .+.+..+|..|+..|
T Consensus 5 Cp~C~~~y~i~d~~ip-~~g~~v~C~~C~~~f 35 (36)
T PF13717_consen 5 CPNCQAKYEIDDEKIP-PKGRKVRCSKCGHVF 35 (36)
T ss_pred CCCCCCEEeCCHHHCC-CCCcEEECCCCCCEe
Confidence 6666666655443221 013445666666555
No 107
>COG1997 RPL43A Ribosomal protein L37AE/L43A [Translation, ribosomal structure and biogenesis]
Probab=56.13 E-value=4.7 Score=32.83 Aligned_cols=33 Identities=9% Similarity=0.026 Sum_probs=20.7
Q ss_pred cCccccccCccccCCchhhHHHHhhhccCccccCCCCCCCCCcccccccCCCCCC
Q 017258 33 AKHFKCHVCHKKLSTAGGMAIHVLQVHKENVTKVPNAKPGRESTDIEIYGMQGIP 87 (374)
Q Consensus 33 eKPfkC~~CgK~Fs~~s~L~rH~r~hH~ekp~~cp~~kpgr~~~~C~iCgK~F~~ 87 (374)
...|.|..|++. .+.|.-.+- +.|..||..|.-
T Consensus 33 ~~~~~Cp~C~~~--------~VkR~a~GI--------------W~C~kCg~~fAG 65 (89)
T COG1997 33 RAKHVCPFCGRT--------TVKRIATGI--------------WKCRKCGAKFAG 65 (89)
T ss_pred hcCCcCCCCCCc--------ceeeeccCe--------------EEcCCCCCeecc
Confidence 456889999876 222222221 788888888743
No 108
>KOG2593 consensus Transcription initiation factor IIE, alpha subunit [Transcription]
Probab=55.70 E-value=5.7 Score=41.10 Aligned_cols=36 Identities=19% Similarity=0.538 Sum_probs=27.0
Q ss_pred ccc-cCcCCCcccChHHHHHHhh-cCccccccCccccC
Q 017258 11 KVW-CYYCDREFDDEKILVQHQK-AKHFKCHVCHKKLS 46 (374)
Q Consensus 11 Kp~-C~~CgK~Fs~~s~Lk~H~R-eKPfkC~~CgK~Fs 46 (374)
..| |..|.|.|+....++.-.. .--|.|..|+....
T Consensus 127 ~~Y~Cp~C~kkyt~Lea~~L~~~~~~~F~C~~C~gelv 164 (436)
T KOG2593|consen 127 AGYVCPNCQKKYTSLEALQLLDNETGEFHCENCGGELV 164 (436)
T ss_pred ccccCCccccchhhhHHHHhhcccCceEEEecCCCchh
Confidence 345 9999999998887765544 55799999976543
No 109
>PF05191 ADK_lid: Adenylate kinase, active site lid; InterPro: IPR007862 Adenylate kinases (ADK; 2.7.4.3 from EC) are phosphotransferases that catalyse the Mg-dependent reversible conversion of ATP and AMP to two molecules of ADP, an essential reaction for many processes in living cells. In large variants of adenylate kinase, the AMP and ATP substrates are buried in a domain that undergoes conformational changes from an open to a closed state when bound to substrate; the ligand is then contained within a highly specific environment required for catalysis. Adenylate kinase is a 3-domain protein consisting of a large central CORE domain flanked by a LID domain on one side and the AMP-binding NMPbind domain on the other []. The LID domain binds ATP and covers the phosphates at the active site. The substrates first bind the CORE domain, followed by closure of the active site by the LID and NMPbind domains. Comparisons of adenylate kinases have revealed a particular divergence in the active site lid. In some organisms, particularly the Gram-positive bacteria, residues in the lid domain have been mutated to cysteines and these cysteine residues (two CX(n)C motifs) are responsible for the binding of a zinc ion. The bound zinc ion in the lid domain is clearly structurally homologous to Zinc-finger domains. However, it is unclear whether the adenylate kinase lid is a novel zinc-finger DNA/RNA binding domain, or that the lid bound zinc serves a purely structural function [].; GO: 0004017 adenylate kinase activity; PDB: 3BE4_A 2OSB_B 2ORI_A 2EU8_A 3DL0_A 1P3J_A 2QAJ_A 2OO7_A 2P3S_A 3DKV_A ....
Probab=54.04 E-value=4.8 Score=27.31 Aligned_cols=34 Identities=21% Similarity=0.235 Sum_probs=20.8
Q ss_pred cccCcCCCcccChHHHHHHhhcCccccccCccccCCch
Q 017258 12 VWCYYCDREFDDEKILVQHQKAKHFKCHVCHKKLSTAG 49 (374)
Q Consensus 12 p~C~~CgK~Fs~~s~Lk~H~ReKPfkC~~CgK~Fs~~s 49 (374)
..|..||+.|.....-- ...=+|+.||..+.++.
T Consensus 2 r~C~~Cg~~Yh~~~~pP----~~~~~Cd~cg~~L~qR~ 35 (36)
T PF05191_consen 2 RICPKCGRIYHIEFNPP----KVEGVCDNCGGELVQRK 35 (36)
T ss_dssp EEETTTTEEEETTTB------SSTTBCTTTTEBEBEEG
T ss_pred cCcCCCCCccccccCCC----CCCCccCCCCCeeEeCC
Confidence 34888888886433210 44457888887766543
No 110
>PF01286 XPA_N: XPA protein N-terminal; InterPro: IPR022652 Xeroderma pigmentosum (XP) [] is a human autosomal recessive disease, characterised by a high incidence of sunlight-induced skin cancer. Skin cells of individual's with this condition are hypersensitive to ultraviolet light, due to defects in the incision step of DNA excision repair. There are a minimum of seven genetic complementation groups involved in this pathway: XP-A to XP-G. XP-A is the most severe form of the disease and is due to defects in a 30 kDa nuclear protein called XPA (or XPAC) []. The sequence of the XPA protein is conserved from higher eukaryotes [] to yeast (gene RAD14) []. XPA is a hydrophilic protein of 247 to 296 amino-acid residues which has a C4-type zinc finger motif in its central section. This entry contains the zinc-finger containing region in the XPA protein. It is found N-terminal to PF05181 from PFAM ; PDB: 1D4U_A 1XPA_A.
Probab=52.89 E-value=2.8 Score=28.21 Aligned_cols=26 Identities=31% Similarity=0.620 Sum_probs=10.9
Q ss_pred cccCcCCCcccChHHHHHHhhcCccccccCcc
Q 017258 12 VWCYYCDREFDDEKILVQHQKAKHFKCHVCHK 43 (374)
Q Consensus 12 p~C~~CgK~Fs~~s~Lk~H~ReKPfkC~~CgK 43 (374)
..|.+|++.|..+.- -+.|.+.+|++
T Consensus 4 ~~C~eC~~~f~dSyL------~~~F~~~VCD~ 29 (34)
T PF01286_consen 4 PKCDECGKPFMDSYL------LNNFDLPVCDK 29 (34)
T ss_dssp EE-TTT--EES-SSC------CCCTS-S--TT
T ss_pred chHhHhCCHHHHHHH------HHhCCcccccc
Confidence 347778877776543 33566666654
No 111
>KOG4124 consensus Putative transcriptional repressor regulating G2/M transition [Transcription; Cell cycle control, cell division, chromosome partitioning]
Probab=52.62 E-value=3.5 Score=41.53 Aligned_cols=62 Identities=24% Similarity=0.335 Sum_probs=41.7
Q ss_pred cCcccccc--CccccCCchhhHHHHhhhccCc---cccCCCCC----CCCCcccccccCCCCCCHHHHHHH
Q 017258 33 AKHFKCHV--CHKKLSTAGGMAIHVLQVHKEN---VTKVPNAK----PGRESTDIEIYGMQGIPPDVLAAH 94 (374)
Q Consensus 33 eKPfkC~~--CgK~Fs~~s~L~rH~r~hH~ek---p~~cp~~k----pgr~~~~C~iCgK~F~~~s~L~~H 94 (374)
.|+|+|.+ |+|.++....|+.|...-|... +.+++..+ -.-|.|.|++|.|++.....|.-|
T Consensus 347 ~~~~~~~vp~~~~~~~n~ng~~~~~~~~h~s~i~~~s~~~~ph~~~~~~nk~~r~~i~~~~~k~~~~l~~~ 417 (442)
T KOG4124|consen 347 DKPYKCPVPNCDKAYKNQNGLKYHKLHGHCSPITTPTPAPIPHQGFVVENKPYRCEVCSKRYKNLNGLKYH 417 (442)
T ss_pred cCCCCCCCCcchhhcccCcceeeccccCcCCCCCCCCCCCCCcceeeeccCcccChhhhhhhccCCCCCce
Confidence 78999998 9999999999998875555331 11222111 123559999999988766555444
No 112
>COG3677 Transposase and inactivated derivatives [DNA replication, recombination, and repair]
Probab=52.19 E-value=4.1 Score=35.44 Aligned_cols=38 Identities=21% Similarity=0.468 Sum_probs=22.6
Q ss_pred ccccCcCCCcccChHHHHHHhh-cCccccccCccccCCchh
Q 017258 11 KVWCYYCDREFDDEKILVQHQK-AKHFKCHVCHKKLSTAGG 50 (374)
Q Consensus 11 Kp~C~~CgK~Fs~~s~Lk~H~R-eKPfkC~~CgK~Fs~~s~ 50 (374)
+.+|..|+... ...+..+.+ ...|+|..|++.|.....
T Consensus 30 ~~~cP~C~s~~--~~k~g~~~~~~qRyrC~~C~~tf~~~~~ 68 (129)
T COG3677 30 KVNCPRCKSSN--VVKIGGIRRGHQRYKCKSCGSTFTVETG 68 (129)
T ss_pred cCcCCCCCccc--eeeECCccccccccccCCcCcceeeecc
Confidence 45588887543 111122222 556899999998887543
No 113
>KOG3214 consensus Uncharacterized Zn ribbon-containing protein [Function unknown]
Probab=51.64 E-value=6.4 Score=32.85 Aligned_cols=7 Identities=57% Similarity=1.085 Sum_probs=4.1
Q ss_pred CCCCCCC
Q 017258 1 MGKKKKR 7 (374)
Q Consensus 1 mgkKk~~ 7 (374)
|||+|.+
T Consensus 1 MgkRk~K 7 (109)
T KOG3214|consen 1 MGKRKSK 7 (109)
T ss_pred CCccccc
Confidence 5665555
No 114
>KOG4124 consensus Putative transcriptional repressor regulating G2/M transition [Transcription; Cell cycle control, cell division, chromosome partitioning]
Probab=51.53 E-value=3.1 Score=41.90 Aligned_cols=46 Identities=28% Similarity=0.712 Sum_probs=35.7
Q ss_pred Cccc-cCc--CCCcccChHHHHHHhh-----------------------cCccccccCccccCCchhhHHHH
Q 017258 10 SKVW-CYY--CDREFDDEKILVQHQK-----------------------AKHFKCHVCHKKLSTAGGMAIHV 55 (374)
Q Consensus 10 EKp~-C~~--CgK~Fs~~s~Lk~H~R-----------------------eKPfkC~~CgK~Fs~~s~L~rH~ 55 (374)
.|.+ |.+ |++.+...-.|+.|.. .|+|+|.+|.|+++..-.|+-|+
T Consensus 347 ~~~~~~~vp~~~~~~~n~ng~~~~~~~~h~s~i~~~s~~~~ph~~~~~~nk~~r~~i~~~~~k~~~~l~~~~ 418 (442)
T KOG4124|consen 347 DKPYKCPVPNCDKAYKNQNGLKYHKLHGHCSPITTPTPAPIPHQGFVVENKPYRCEVCSKRYKNLNGLKYHR 418 (442)
T ss_pred cCCCCCCCCcchhhcccCcceeeccccCcCCCCCCCCCCCCCcceeeeccCcccChhhhhhhccCCCCCcee
Confidence 3555 876 9998887777776643 68999999999988888777765
No 115
>COG5112 UFD2 U1-like Zn-finger-containing protein [General function prediction only]
Probab=51.42 E-value=5.6 Score=33.61 Aligned_cols=21 Identities=43% Similarity=0.803 Sum_probs=11.8
Q ss_pred cccCcCCCcccChHHHHHHhh
Q 017258 12 VWCYYCDREFDDEKILVQHQK 32 (374)
Q Consensus 12 p~C~~CgK~Fs~~s~Lk~H~R 32 (374)
+||-+|.+-|.....|..|.+
T Consensus 56 hYCieCaryf~t~~aL~~Hkk 76 (126)
T COG5112 56 HYCIECARYFITEKALMEHKK 76 (126)
T ss_pred eeeehhHHHHHHHHHHHHHhc
Confidence 445555555555555555554
No 116
>TIGR02098 MJ0042_CXXC MJ0042 family finger-like domain. This domain contains a CXXCX(19)CXXC motif suggestive of both zinc fingers and thioredoxin, usually found at the N-terminus of prokaryotic proteins. One partially characterized gene, agmX, is among a large set in Myxococcus whose interruption affects adventurous gliding motility.
Probab=51.12 E-value=5.4 Score=26.73 Aligned_cols=31 Identities=16% Similarity=0.413 Sum_probs=15.0
Q ss_pred cCcCCCcccChHHHHHHhhcCccccccCcccc
Q 017258 14 CYYCDREFDDEKILVQHQKAKHFKCHVCHKKL 45 (374)
Q Consensus 14 C~~CgK~Fs~~s~Lk~H~ReKPfkC~~CgK~F 45 (374)
|..|+..|.-....... ....++|..|+..|
T Consensus 5 CP~C~~~~~v~~~~~~~-~~~~v~C~~C~~~~ 35 (38)
T TIGR02098 5 CPNCKTSFRVVDSQLGA-NGGKVRCGKCGHVW 35 (38)
T ss_pred CCCCCCEEEeCHHHcCC-CCCEEECCCCCCEE
Confidence 66666666544332210 02235566666555
No 117
>COG4530 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=50.88 E-value=11 Score=32.18 Aligned_cols=37 Identities=14% Similarity=0.038 Sum_probs=26.6
Q ss_pred CCCccccCcCCCcccChHHHHHHhhcCccccccCccccCCchhhH
Q 017258 8 VSSKVWCYYCDREFDDEKILVQHQKAKHFKCHVCHKKLSTAGGMA 52 (374)
Q Consensus 8 ~gEKp~C~~CgK~Fs~~s~Lk~H~ReKPfkC~~CgK~Fs~~s~L~ 52 (374)
.|.|-.|..|+|.|-. |+ .+|..|.+|||.|-+ +.|.
T Consensus 6 LGtKridPetg~KFYD---LN----rdPiVsPytG~s~P~-s~fe 42 (129)
T COG4530 6 LGTKRIDPETGKKFYD---LN----RDPIVSPYTGKSYPR-SYFE 42 (129)
T ss_pred ccccccCccccchhhc---cC----CCccccCcccccchH-HHHH
Confidence 3566669999999854 33 568899999999943 4443
No 118
>PF14353 CpXC: CpXC protein
Probab=49.93 E-value=7.2 Score=33.24 Aligned_cols=45 Identities=24% Similarity=0.353 Sum_probs=30.1
Q ss_pred ccCcCCCcccChH----------HHHHHhh---cCccccccCccccCCchhhHHHHhh
Q 017258 13 WCYYCDREFDDEK----------ILVQHQK---AKHFKCHVCHKKLSTAGGMAIHVLQ 57 (374)
Q Consensus 13 ~C~~CgK~Fs~~s----------~Lk~H~R---eKPfkC~~CgK~Fs~~s~L~rH~r~ 57 (374)
.|..|++.|...- .|+.-+. ---|.|..||+.|.-...+.-|...
T Consensus 3 tCP~C~~~~~~~v~~~I~~~~~p~l~e~il~g~l~~~~CP~Cg~~~~~~~p~lY~D~~ 60 (128)
T PF14353_consen 3 TCPHCGHEFEFEVWTSINADEDPELKEKILDGSLFSFTCPSCGHKFRLEYPLLYHDPE 60 (128)
T ss_pred CCCCCCCeeEEEEEeEEcCcCCHHHHHHHHcCCcCEEECCCCCCceecCCCEEEEcCC
Confidence 3999999887432 2222222 3357899999999887777767644
No 119
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=49.86 E-value=10 Score=24.92 Aligned_cols=22 Identities=32% Similarity=0.785 Sum_probs=11.1
Q ss_pred cCcCCCcccChHHHHHHhhcCccccccCcc
Q 017258 14 CYYCDREFDDEKILVQHQKAKHFKCHVCHK 43 (374)
Q Consensus 14 C~~CgK~Fs~~s~Lk~H~ReKPfkC~~CgK 43 (374)
|..||..+... +.+++|.+|+.
T Consensus 4 C~~CGy~y~~~--------~~~~~CP~Cg~ 25 (33)
T cd00350 4 CPVCGYIYDGE--------EAPWVCPVCGA 25 (33)
T ss_pred CCCCCCEECCC--------cCCCcCcCCCC
Confidence 66666544322 13556666653
No 120
>PF14369 zf-RING_3: zinc-finger
Probab=48.44 E-value=8.9 Score=25.80 Aligned_cols=31 Identities=23% Similarity=0.558 Sum_probs=18.5
Q ss_pred ccccCcCCCcccChHHHHHHhhcCcc-ccccCccccCC
Q 017258 11 KVWCYYCDREFDDEKILVQHQKAKHF-KCHVCHKKLST 47 (374)
Q Consensus 11 Kp~C~~CgK~Fs~~s~Lk~H~ReKPf-kC~~CgK~Fs~ 47 (374)
++||..|++.+.-... .... .|..|+..|..
T Consensus 2 ~ywCh~C~~~V~~~~~------~~~~~~CP~C~~gFvE 33 (35)
T PF14369_consen 2 RYWCHQCNRFVRIAPS------PDSDVACPRCHGGFVE 33 (35)
T ss_pred CEeCccCCCEeEeCcC------CCCCcCCcCCCCcEeE
Confidence 4668888877653211 1122 48888887753
No 121
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=48.28 E-value=8.6 Score=26.00 Aligned_cols=31 Identities=16% Similarity=0.475 Sum_probs=16.7
Q ss_pred cCcCCCcccChHHHHHHhhcCccccccCcccc
Q 017258 14 CYYCDREFDDEKILVQHQKAKHFKCHVCHKKL 45 (374)
Q Consensus 14 C~~CgK~Fs~~s~Lk~H~ReKPfkC~~CgK~F 45 (374)
|..|+..|.-...... ...+..+|..|+..|
T Consensus 5 CP~C~~~f~v~~~~l~-~~~~~vrC~~C~~~f 35 (37)
T PF13719_consen 5 CPNCQTRFRVPDDKLP-AGGRKVRCPKCGHVF 35 (37)
T ss_pred CCCCCceEEcCHHHcc-cCCcEEECCCCCcEe
Confidence 6667776665443211 114456677776655
No 122
>PRK14873 primosome assembly protein PriA; Provisional
Probab=48.08 E-value=13 Score=40.74 Aligned_cols=22 Identities=5% Similarity=-0.080 Sum_probs=14.8
Q ss_pred cccCCCCCCCCCcccccccCCC
Q 017258 63 VTKVPNAKPGRESTDIEIYGMQ 84 (374)
Q Consensus 63 p~~cp~~kpgr~~~~C~iCgK~ 84 (374)
...|..|......+.|..||..
T Consensus 410 ~l~Ch~CG~~~~p~~Cp~Cgs~ 431 (665)
T PRK14873 410 TPRCRWCGRAAPDWRCPRCGSD 431 (665)
T ss_pred eeECCCCcCCCcCccCCCCcCC
Confidence 4567776443456889999865
No 123
>COG1997 RPL43A Ribosomal protein L37AE/L43A [Translation, ribosomal structure and biogenesis]
Probab=47.75 E-value=11 Score=30.79 Aligned_cols=32 Identities=25% Similarity=0.593 Sum_probs=23.2
Q ss_pred ccccCcCCCcccChHHHHHHhh--cCccccccCccccCCchh
Q 017258 11 KVWCYYCDREFDDEKILVQHQK--AKHFKCHVCHKKLSTAGG 50 (374)
Q Consensus 11 Kp~C~~CgK~Fs~~s~Lk~H~R--eKPfkC~~CgK~Fs~~s~ 50 (374)
++.|.+|++. .+.| ..-++|..|+..|.--..
T Consensus 35 ~~~Cp~C~~~--------~VkR~a~GIW~C~kCg~~fAGgay 68 (89)
T COG1997 35 KHVCPFCGRT--------TVKRIATGIWKCRKCGAKFAGGAY 68 (89)
T ss_pred CCcCCCCCCc--------ceeeeccCeEEcCCCCCeeccccc
Confidence 4559999975 2334 556899999999976543
No 124
>COG1571 Predicted DNA-binding protein containing a Zn-ribbon domain [General function prediction only]
Probab=46.88 E-value=10 Score=39.27 Aligned_cols=33 Identities=15% Similarity=0.415 Sum_probs=21.6
Q ss_pred CccccCcCCCcccChHHHHHHhhcCccccccCccccCCch
Q 017258 10 SKVWCYYCDREFDDEKILVQHQKAKHFKCHVCHKKLSTAG 49 (374)
Q Consensus 10 EKp~C~~CgK~Fs~~s~Lk~H~ReKPfkC~~CgK~Fs~~s 49 (374)
+++.|..||++..+.- .+-|+|..||+++....
T Consensus 349 ~~p~Cp~Cg~~m~S~G-------~~g~rC~kCg~~~~~~~ 381 (421)
T COG1571 349 VNPVCPRCGGRMKSAG-------RNGFRCKKCGTRARETL 381 (421)
T ss_pred cCCCCCccCCchhhcC-------CCCcccccccccCCccc
Confidence 4566888887543321 22788888888876654
No 125
>KOG4577 consensus Transcription factor LIM3, contains LIM and HOX domains [Transcription]
Probab=45.74 E-value=8.9 Score=37.81 Aligned_cols=42 Identities=29% Similarity=0.530 Sum_probs=28.6
Q ss_pred CccccCcCCCcccChHHHHHHhh---cCccccccCc-----cccCCchhh
Q 017258 10 SKVWCYYCDREFDDEKILVQHQK---AKHFKCHVCH-----KKLSTAGGM 51 (374)
Q Consensus 10 EKp~C~~CgK~Fs~~s~Lk~H~R---eKPfkC~~Cg-----K~Fs~~s~L 51 (374)
|.+.|.-|++...++..|+.--| .+-.+|..|. +.|.+.+.+
T Consensus 32 eip~CagC~q~IlDrFilKvl~R~wHs~CLkCs~C~~qL~drCFsR~~s~ 81 (383)
T KOG4577|consen 32 EIPICAGCDQHILDRFILKVLDRHWHSSCLKCSDCHDQLADRCFSREGSV 81 (383)
T ss_pred ccccccchHHHHHHHHHHHHHhhhhhhhhcchhhhhhHHHHHHhhcCCce
Confidence 45669999998888888777666 4555666553 456666554
No 126
>PRK00464 nrdR transcriptional regulator NrdR; Validated
Probab=45.65 E-value=6.3 Score=35.36 Aligned_cols=15 Identities=7% Similarity=-0.104 Sum_probs=11.4
Q ss_pred ccccccCCCCCCHHH
Q 017258 76 TDIEIYGMQGIPPDV 90 (374)
Q Consensus 76 ~~C~iCgK~F~~~s~ 90 (374)
++|..||++|..-..
T Consensus 29 ~~c~~c~~~f~~~e~ 43 (154)
T PRK00464 29 RECLACGKRFTTFER 43 (154)
T ss_pred eeccccCCcceEeEe
Confidence 788899999865443
No 127
>PRK06266 transcription initiation factor E subunit alpha; Validated
Probab=45.63 E-value=8.5 Score=35.25 Aligned_cols=33 Identities=21% Similarity=0.551 Sum_probs=21.3
Q ss_pred ccc-cCcCCCcccChHHHHHHhhcCccccccCccccCCc
Q 017258 11 KVW-CYYCDREFDDEKILVQHQKAKHFKCHVCHKKLSTA 48 (374)
Q Consensus 11 Kp~-C~~CgK~Fs~~s~Lk~H~ReKPfkC~~CgK~Fs~~ 48 (374)
.+| |..|++.|+....+ +--|.|..||..+..-
T Consensus 116 ~~Y~Cp~C~~rytf~eA~-----~~~F~Cp~Cg~~L~~~ 149 (178)
T PRK06266 116 MFFFCPNCHIRFTFDEAM-----EYGFRCPQCGEMLEEY 149 (178)
T ss_pred CEEECCCCCcEEeHHHHh-----hcCCcCCCCCCCCeec
Confidence 355 77777777766654 2367777777765543
No 128
>PRK00398 rpoP DNA-directed RNA polymerase subunit P; Provisional
Probab=45.47 E-value=6.6 Score=27.61 Aligned_cols=27 Identities=22% Similarity=0.643 Sum_probs=14.8
Q ss_pred cCcCCCcccChHHHHHHhhcCccccccCccccC
Q 017258 14 CYYCDREFDDEKILVQHQKAKHFKCHVCHKKLS 46 (374)
Q Consensus 14 C~~CgK~Fs~~s~Lk~H~ReKPfkC~~CgK~Fs 46 (374)
|..||..|..... ...++|..||..+.
T Consensus 6 C~~CG~~~~~~~~------~~~~~Cp~CG~~~~ 32 (46)
T PRK00398 6 CARCGREVELDEY------GTGVRCPYCGYRIL 32 (46)
T ss_pred CCCCCCEEEECCC------CCceECCCCCCeEE
Confidence 7777766654321 11456777765543
No 129
>PRK14892 putative transcription elongation factor Elf1; Provisional
Probab=44.22 E-value=10 Score=31.66 Aligned_cols=11 Identities=18% Similarity=0.323 Sum_probs=5.7
Q ss_pred ccccCccccCC
Q 017258 37 KCHVCHKKLST 47 (374)
Q Consensus 37 kC~~CgK~Fs~ 47 (374)
.|..||..|.+
T Consensus 44 ~C~~CG~y~~~ 54 (99)
T PRK14892 44 TCGNCGLYTEF 54 (99)
T ss_pred ECCCCCCccCE
Confidence 45556555444
No 130
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=44.21 E-value=3.5e+02 Score=27.30 Aligned_cols=18 Identities=17% Similarity=-0.053 Sum_probs=11.6
Q ss_pred ccCCCCCCHHHHHHHHhh
Q 017258 80 IYGMQGIPPDVLAAHYGE 97 (374)
Q Consensus 80 iCgK~F~~~s~L~~H~rt 97 (374)
.|.+.|...-+|+.|...
T Consensus 152 GC~RTyLsqrDlqAHInh 169 (389)
T KOG2932|consen 152 GCLRTYLSQRDLQAHINH 169 (389)
T ss_pred hHHHHHhhHHHHHHHhhh
Confidence 466667666667666554
No 131
>KOG3671 consensus Actin regulatory protein (Wiskott-Aldrich syndrome protein) [Signal transduction mechanisms; Cytoskeleton]
Probab=44.00 E-value=4.4e+02 Score=28.31 Aligned_cols=8 Identities=25% Similarity=0.626 Sum_probs=3.5
Q ss_pred cccchhHH
Q 017258 350 SQMSSIDA 357 (374)
Q Consensus 350 ~~~~~~~~ 357 (374)
.||..||+
T Consensus 506 ~~Lk~v~~ 513 (569)
T KOG3671|consen 506 GQLKKVDS 513 (569)
T ss_pred ccccccch
Confidence 34444443
No 132
>TIGR00373 conserved hypothetical protein TIGR00373. This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain.
Probab=43.75 E-value=11 Score=33.87 Aligned_cols=33 Identities=18% Similarity=0.330 Sum_probs=21.2
Q ss_pred ccc-cCcCCCcccChHHHHHHhhcCccccccCccccCCc
Q 017258 11 KVW-CYYCDREFDDEKILVQHQKAKHFKCHVCHKKLSTA 48 (374)
Q Consensus 11 Kp~-C~~CgK~Fs~~s~Lk~H~ReKPfkC~~CgK~Fs~~ 48 (374)
.+| |..|++.|+....+. --|.|..||..+..-
T Consensus 108 ~~Y~Cp~c~~r~tf~eA~~-----~~F~Cp~Cg~~L~~~ 141 (158)
T TIGR00373 108 MFFICPNMCVRFTFNEAME-----LNFTCPRCGAMLDYL 141 (158)
T ss_pred CeEECCCCCcEeeHHHHHH-----cCCcCCCCCCEeeec
Confidence 445 777777777666653 357777777664443
No 133
>PRK03976 rpl37ae 50S ribosomal protein L37Ae; Reviewed
Probab=42.69 E-value=14 Score=30.28 Aligned_cols=12 Identities=25% Similarity=0.661 Sum_probs=9.3
Q ss_pred cCccccccCccc
Q 017258 33 AKHFKCHVCHKK 44 (374)
Q Consensus 33 eKPfkC~~CgK~ 44 (374)
...|.|.+|++.
T Consensus 34 ~a~y~CpfCgk~ 45 (90)
T PRK03976 34 RAKHVCPVCGRP 45 (90)
T ss_pred hcCccCCCCCCC
Confidence 567899999765
No 134
>PRK09678 DNA-binding transcriptional regulator; Provisional
Probab=42.51 E-value=6.8 Score=30.77 Aligned_cols=17 Identities=18% Similarity=0.454 Sum_probs=8.4
Q ss_pred cCccccc--cCccccCCch
Q 017258 33 AKHFKCH--VCHKKLSTAG 49 (374)
Q Consensus 33 eKPfkC~--~CgK~Fs~~s 49 (374)
++-+.|. .||.+|....
T Consensus 25 ~~Y~qC~N~eCg~tF~t~e 43 (72)
T PRK09678 25 ERYHQCQNVNCSATFITYE 43 (72)
T ss_pred eeeeecCCCCCCCEEEEEE
Confidence 4445555 4555555443
No 135
>KOG1280 consensus Uncharacterized conserved protein containing ZZ-type Zn-finger [General function prediction only]
Probab=41.99 E-value=9.4 Score=38.52 Aligned_cols=31 Identities=29% Similarity=0.423 Sum_probs=26.8
Q ss_pred cCccccccCccccCCchhhHHHHhhhccCcc
Q 017258 33 AKHFKCHVCHKKLSTAGGMAIHVLQVHKENV 63 (374)
Q Consensus 33 eKPfkC~~CgK~Fs~~s~L~rH~r~hH~ekp 63 (374)
+.-|.|.+|++.-.+...|..|+...|-+..
T Consensus 77 ~qSftCPyC~~~Gfte~~f~~Hv~s~Hpda~ 107 (381)
T KOG1280|consen 77 PQSFTCPYCGIMGFTERQFGTHVLSQHPEAS 107 (381)
T ss_pred cccccCCcccccccchhHHHHHhhhcCcccC
Confidence 5679999999998888999999988887754
No 136
>smart00531 TFIIE Transcription initiation factor IIE.
Probab=41.96 E-value=12 Score=32.92 Aligned_cols=37 Identities=16% Similarity=0.403 Sum_probs=24.2
Q ss_pred ccc-cCcCCCcccChHHHHH-HhhcCccccccCccccCCc
Q 017258 11 KVW-CYYCDREFDDEKILVQ-HQKAKHFKCHVCHKKLSTA 48 (374)
Q Consensus 11 Kp~-C~~CgK~Fs~~s~Lk~-H~ReKPfkC~~CgK~Fs~~ 48 (374)
..| |..|++.|.....+.. +. +..|.|..||..+...
T Consensus 98 ~~Y~Cp~C~~~y~~~ea~~~~d~-~~~f~Cp~Cg~~l~~~ 136 (147)
T smart00531 98 AYYKCPNCQSKYTFLEANQLLDM-DGTFTCPRCGEELEED 136 (147)
T ss_pred cEEECcCCCCEeeHHHHHHhcCC-CCcEECCCCCCEEEEc
Confidence 345 8888888886555433 22 4448888888776443
No 137
>COG1996 RPC10 DNA-directed RNA polymerase, subunit RPC10 (contains C4-type Zn-finger) [Transcription]
Probab=41.67 E-value=12 Score=27.25 Aligned_cols=25 Identities=24% Similarity=0.792 Sum_probs=14.3
Q ss_pred cCcCCCcccChHHHHHHhhcCccccccCccc
Q 017258 14 CYYCDREFDDEKILVQHQKAKHFKCHVCHKK 44 (374)
Q Consensus 14 C~~CgK~Fs~~s~Lk~H~ReKPfkC~~CgK~ 44 (374)
|-.|++.|.... ......|.+||.+
T Consensus 9 C~~Cg~~~~~~~------~~~~irCp~Cg~r 33 (49)
T COG1996 9 CARCGREVELDQ------ETRGIRCPYCGSR 33 (49)
T ss_pred hhhcCCeeehhh------ccCceeCCCCCcE
Confidence 777777772211 1445667777654
No 138
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=41.34 E-value=9.1 Score=37.41 Aligned_cols=14 Identities=21% Similarity=0.456 Sum_probs=4.7
Q ss_pred CccccccCccccCC
Q 017258 34 KHFKCHVCHKKLST 47 (374)
Q Consensus 34 KPfkC~~CgK~Fs~ 47 (374)
+..+|.+||..-..
T Consensus 210 ~R~~Cp~Cg~~~~~ 223 (290)
T PF04216_consen 210 VRIKCPYCGNTDHE 223 (290)
T ss_dssp -TTS-TTT---SS-
T ss_pred cCCCCcCCCCCCCc
Confidence 34567777765333
No 139
>PF04959 ARS2: Arsenite-resistance protein 2; InterPro: IPR007042 This entry represents Arsenite-resistance protein 2 (also known as Serrate RNA effector molecule homolog) which is thought to play a role in arsenite resistance [], although does not directly confer arsenite resistance but rather modulates arsenic sensitivity []. Arsenite is a carcinogenic compound which can act as a comutagen by inhibiting DNA repair. It is also involved in cell cycle progression at S phase. ; PDB: 3AX1_A.
Probab=41.28 E-value=17 Score=34.45 Aligned_cols=23 Identities=22% Similarity=0.447 Sum_probs=17.5
Q ss_pred CccccCcCCCcccChHHHHHHhh
Q 017258 10 SKVWCYYCDREFDDEKILVQHQK 32 (374)
Q Consensus 10 EKp~C~~CgK~Fs~~s~Lk~H~R 32 (374)
.||.|..|+|.|.-.+-..+|+.
T Consensus 76 ~K~~C~lc~KlFkg~eFV~KHI~ 98 (214)
T PF04959_consen 76 DKWRCPLCGKLFKGPEFVRKHIF 98 (214)
T ss_dssp EEEEE-SSS-EESSHHHHHHHHH
T ss_pred CEECCCCCCcccCChHHHHHHHh
Confidence 45559999999999888888876
No 140
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=41.26 E-value=15 Score=23.07 Aligned_cols=10 Identities=20% Similarity=0.527 Sum_probs=6.7
Q ss_pred ccccCccccC
Q 017258 37 KCHVCHKKLS 46 (374)
Q Consensus 37 kC~~CgK~Fs 46 (374)
.|.+||..|.
T Consensus 16 ~Cp~CG~~F~ 25 (26)
T PF10571_consen 16 FCPHCGYDFE 25 (26)
T ss_pred cCCCCCCCCc
Confidence 5777777664
No 141
>PHA00626 hypothetical protein
Probab=40.97 E-value=8.3 Score=28.91 Aligned_cols=13 Identities=23% Similarity=0.468 Sum_probs=8.3
Q ss_pred ccccccCccccCC
Q 017258 35 HFKCHVCHKKLST 47 (374)
Q Consensus 35 PfkC~~CgK~Fs~ 47 (374)
.|+|..||..|+.
T Consensus 23 rYkCkdCGY~ft~ 35 (59)
T PHA00626 23 DYVCCDCGYNDSK 35 (59)
T ss_pred ceEcCCCCCeech
Confidence 5666666666654
No 142
>COG5151 SSL1 RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription / DNA replication, recombination, and repair]
Probab=40.71 E-value=16 Score=36.52 Aligned_cols=24 Identities=8% Similarity=-0.230 Sum_probs=20.3
Q ss_pred ccccccCCCCCCHHHHHHHHhhhc
Q 017258 76 TDIEIYGMQGIPPDVLAAHYGEEE 99 (374)
Q Consensus 76 ~~C~iCgK~F~~~s~L~~H~rth~ 99 (374)
|.|+.|...|-...+.-.|...|.
T Consensus 389 Y~Ce~CK~~FC~dCdvfiHe~Lh~ 412 (421)
T COG5151 389 YQCELCKSTFCSDCDVFIHETLHF 412 (421)
T ss_pred eechhhhhhhhhhhHHHHHHHHhh
Confidence 999999999988888888877664
No 143
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=40.63 E-value=4e+02 Score=26.92 Aligned_cols=12 Identities=33% Similarity=0.708 Sum_probs=6.7
Q ss_pred CCccc-cCcCCCc
Q 017258 9 SSKVW-CYYCDRE 20 (374)
Q Consensus 9 gEKp~-C~~CgK~ 20 (374)
+++.+ |..|++-
T Consensus 87 ~p~VHfCd~Cd~P 99 (389)
T KOG2932|consen 87 GPRVHFCDRCDFP 99 (389)
T ss_pred CcceEeecccCCc
Confidence 44444 7777654
No 144
>PF01155 HypA: Hydrogenase expression/synthesis hypA family; InterPro: IPR000688 Bacterial membrane-bound nickel-dependent hydrogenases requires a number of accessory proteins which are involved in their maturation. The exact role of these proteins is not yet clear, but some seem to be required for the incorporation of the nickel ions []. One of these proteins is generally known as hypA. It is a protein of about 12 to 14 kDa that contains, in its C-terminal region, four conserved cysteines that form a zinc-finger like motif. Escherichia coli has two proteins that belong to this family, hypA and hybF. A homologue, MJ0214, has also been found in a number of archaeal species, including the genome of Methanocaldococcus jannaschii (Methanococcus jannaschii).; GO: 0016151 nickel ion binding, 0006464 protein modification process; PDB: 2KDX_A 3A44_D 3A43_B.
Probab=39.62 E-value=12 Score=31.56 Aligned_cols=25 Identities=28% Similarity=0.808 Sum_probs=13.5
Q ss_pred cccCcCCCcccChHHHHHHhhcCccccccCccc
Q 017258 12 VWCYYCDREFDDEKILVQHQKAKHFKCHVCHKK 44 (374)
Q Consensus 12 p~C~~CgK~Fs~~s~Lk~H~ReKPfkC~~CgK~ 44 (374)
.+|..||+.|.-... .|.|..|+..
T Consensus 71 ~~C~~Cg~~~~~~~~--------~~~CP~Cgs~ 95 (113)
T PF01155_consen 71 ARCRDCGHEFEPDEF--------DFSCPRCGSP 95 (113)
T ss_dssp EEETTTS-EEECHHC--------CHH-SSSSSS
T ss_pred EECCCCCCEEecCCC--------CCCCcCCcCC
Confidence 447777777764332 2557777654
No 145
>KOG4215 consensus Hepatocyte nuclear factor 4 and similar steroid hormone receptors [Transcription]
Probab=39.04 E-value=9.5 Score=38.85 Aligned_cols=17 Identities=24% Similarity=0.341 Sum_probs=7.4
Q ss_pred cccCccccCCchhhHHHH
Q 017258 38 CHVCHKKLSTAGGMAIHV 55 (374)
Q Consensus 38 C~~CgK~Fs~~s~L~rH~ 55 (374)
|+-| |.|.|++-.++|+
T Consensus 39 CdGC-KGFFRRSVrk~~~ 55 (432)
T KOG4215|consen 39 CDGC-KGFFRRSVRKNHQ 55 (432)
T ss_pred cCcc-hHHHHHHHHhcce
Confidence 4444 3444444444443
No 146
>cd00729 rubredoxin_SM Rubredoxin, Small Modular nonheme iron binding domain containing a [Fe(SCys)4] center, present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=39.00 E-value=15 Score=24.38 Aligned_cols=22 Identities=27% Similarity=0.632 Sum_probs=12.5
Q ss_pred cCcCCCcccChHHHHHHhhcCccccccCcc
Q 017258 14 CYYCDREFDDEKILVQHQKAKHFKCHVCHK 43 (374)
Q Consensus 14 C~~CgK~Fs~~s~Lk~H~ReKPfkC~~CgK 43 (374)
|..||..+... +.+.+|.+|+.
T Consensus 5 C~~CG~i~~g~--------~~p~~CP~Cg~ 26 (34)
T cd00729 5 CPVCGYIHEGE--------EAPEKCPICGA 26 (34)
T ss_pred CCCCCCEeECC--------cCCCcCcCCCC
Confidence 77777554321 23556777764
No 147
>cd00065 FYVE FYVE domain; Zinc-binding domain; targets proteins to membrane lipids via interaction with phosphatidylinositol-3-phosphate, PI3P; present in Fab1, YOTB, Vac1, and EEA1;
Probab=38.83 E-value=19 Score=25.94 Aligned_cols=28 Identities=18% Similarity=0.584 Sum_probs=21.2
Q ss_pred cCcCCCcccChHHHHHHhhcCccccccCccccCCch
Q 017258 14 CYYCDREFDDEKILVQHQKAKHFKCHVCHKKLSTAG 49 (374)
Q Consensus 14 C~~CgK~Fs~~s~Lk~H~ReKPfkC~~CgK~Fs~~s 49 (374)
|..|++.|... .|.+.|..||+.|...-
T Consensus 5 C~~C~~~F~~~--------~rk~~Cr~Cg~~~C~~C 32 (57)
T cd00065 5 CMGCGKPFTLT--------RRRHHCRNCGRIFCSKC 32 (57)
T ss_pred CcccCccccCC--------ccccccCcCcCCcChHH
Confidence 88899888752 45678888998888743
No 148
>KOG0717 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=37.80 E-value=18 Score=38.02 Aligned_cols=24 Identities=29% Similarity=0.765 Sum_probs=21.1
Q ss_pred CCccccCcCCCcccChHHHHHHhh
Q 017258 9 SSKVWCYYCDREFDDEKILVQHQK 32 (374)
Q Consensus 9 gEKp~C~~CgK~Fs~~s~Lk~H~R 32 (374)
++-.||-+|+|.|.....|+.|..
T Consensus 290 ge~lyC~vCnKsFKseKq~kNHEn 313 (508)
T KOG0717|consen 290 GEVLYCVVCNKSFKSEKQLKNHEN 313 (508)
T ss_pred CCceEEeeccccccchHHHHhhHH
Confidence 555789999999999999999977
No 149
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=36.59 E-value=15 Score=40.46 Aligned_cols=19 Identities=16% Similarity=-0.066 Sum_probs=11.4
Q ss_pred ccccccCCCCCCHHHHHHH
Q 017258 76 TDIEIYGMQGIPPDVLAAH 94 (374)
Q Consensus 76 ~~C~iCgK~F~~~s~L~~H 94 (374)
.+|..|+..|...+.+..|
T Consensus 679 RKCP~Cn~aFganDv~~I~ 697 (698)
T KOG0978|consen 679 RKCPKCNAAFGANDVHRIH 697 (698)
T ss_pred CCCCCCCCCCCcccccccC
Confidence 3467777777665554443
No 150
>smart00659 RPOLCX RNA polymerase subunit CX. present in RNA polymerase I, II and III
Probab=36.44 E-value=18 Score=25.61 Aligned_cols=24 Identities=25% Similarity=0.606 Sum_probs=13.0
Q ss_pred cCcCCCcccChHHHHHHhhcCccccccCccc
Q 017258 14 CYYCDREFDDEKILVQHQKAKHFKCHVCHKK 44 (374)
Q Consensus 14 C~~CgK~Fs~~s~Lk~H~ReKPfkC~~CgK~ 44 (374)
|..||..|..+. .-..+|..||.+
T Consensus 5 C~~Cg~~~~~~~-------~~~irC~~CG~r 28 (44)
T smart00659 5 CGECGRENEIKS-------KDVVRCRECGYR 28 (44)
T ss_pred CCCCCCEeecCC-------CCceECCCCCce
Confidence 666666665331 234556666654
No 151
>KOG4727 consensus U1-like Zn-finger protein [General function prediction only]
Probab=35.86 E-value=18 Score=33.10 Aligned_cols=23 Identities=26% Similarity=0.531 Sum_probs=20.3
Q ss_pred cccCcCCCcccChHHHHHHhhcC
Q 017258 12 VWCYYCDREFDDEKILVQHQKAK 34 (374)
Q Consensus 12 p~C~~CgK~Fs~~s~Lk~H~ReK 34 (374)
|||.+|+-+|.+.-++..|+..|
T Consensus 76 yyCdVCdcvvKDSinflDHiNgK 98 (193)
T KOG4727|consen 76 YYCDVCDCVVKDSINFLDHINGK 98 (193)
T ss_pred eeeeecceeehhhHHHHHHhccH
Confidence 67999999999999999998733
No 152
>PF01363 FYVE: FYVE zinc finger; InterPro: IPR000306 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The FYVE zinc finger is named after four proteins that it has been found in: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two zinc ions []. The FYVE finger has eight potential zinc coordinating cysteine positions. Many members of this family also include two histidines in a motif R+HHC+XCG, where + represents a charged residue and X any residue. FYVE-type domains are divided into two known classes: FYVE domains that specifically bind to phosphatidylinositol 3-phosphate in lipid bilayers and FYVE-related domains of undetermined function []. Those that bind to phosphatidylinositol 3-phosphate are often found in proteins targeted to lipid membranes that are involved in regulating membrane traffic [, , ]. Most FYVE domains target proteins to endosomes by binding specifically to phosphatidylinositol-3-phosphate at the membrane surface. By contrast, the CARP2 FYVE-like domain is not optimized to bind to phosphoinositides or insert into lipid bilayers. FYVE domains are distinguished from other zinc fingers by three signature sequences: an N-terminal WxxD motif, a basic R(R/K)HHCR patch, and a C-terminal RVC motif. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding; PDB: 1HYI_A 1JOC_B 1HYJ_A 1DVP_A 3ZYQ_A 4AVX_A 1VFY_A 3T7L_A 1X4U_A 1WFK_A ....
Probab=35.78 E-value=12 Score=28.18 Aligned_cols=31 Identities=16% Similarity=0.519 Sum_probs=15.7
Q ss_pred cccCcCCCcccChHHHHHHhhcCccccccCccccCCchh
Q 017258 12 VWCYYCDREFDDEKILVQHQKAKHFKCHVCHKKLSTAGG 50 (374)
Q Consensus 12 p~C~~CgK~Fs~~s~Lk~H~ReKPfkC~~CgK~Fs~~s~ 50 (374)
..|..|++.|... .|.+.|..||+.|...-.
T Consensus 10 ~~C~~C~~~F~~~--------~rrhhCr~CG~~vC~~Cs 40 (69)
T PF01363_consen 10 SNCMICGKKFSLF--------RRRHHCRNCGRVVCSSCS 40 (69)
T ss_dssp SB-TTT--B-BSS--------S-EEE-TTT--EEECCCS
T ss_pred CcCcCcCCcCCCc--------eeeEccCCCCCEECCchh
Confidence 3499999999531 456789999988876543
No 153
>PF04573 SPC22: Signal peptidase subunit; InterPro: IPR007653 Translocation of polypeptide chains across the endoplasmic reticulum membrane is triggered by signal sequences. During translocation of the nascent chain through the membrane, the signal sequence of most secretory and membrane proteins is cleaved off. Cleavage occurs by the signal peptidase complex (SPC), which consists of four subunits in yeast and five in mammals. This family is is described as similar to microsomal signal peptidase 23 kDa subunit. Found in eukaryotes [, ].; GO: 0008233 peptidase activity, 0006465 signal peptide processing, 0005787 signal peptidase complex, 0016021 integral to membrane
Probab=35.74 E-value=27 Score=31.99 Aligned_cols=36 Identities=25% Similarity=0.491 Sum_probs=29.8
Q ss_pred CCceEEEEecccccChHHHhhccC----ceeecccccccch
Q 017258 318 AVNEVYLVWEDEAMSMEERRMSSV----KYQVHDETSQMSS 354 (374)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~ 354 (374)
..||| .+||+=.-+-|+-++.|. ||.++|....+..
T Consensus 99 ~~Nev-viWD~Ii~~~~~a~~~~~~~~~KY~~~d~~~~l~~ 138 (175)
T PF04573_consen 99 PVNEV-VIWDKIIRRKEDAVLNLKNVKSKYPFWDDGNGLRG 138 (175)
T ss_pred CcceE-EEehHhhcccchhhhhhhccccceeeECCCCcccC
Confidence 36888 679999999999888887 9999998776644
No 154
>smart00064 FYVE Protein present in Fab1, YOTB, Vac1, and EEA1. The FYVE zinc finger is named after four proteins where it was first found: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two Zn2+ ions. The FYVE finger has eight potential zinc coordinating cysteine positions. The FYVE finger is structurally related to the KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]
Probab=35.55 E-value=8.5 Score=41.31 Aligned_cols=33 Identities=21% Similarity=0.293 Sum_probs=20.3
Q ss_pred CCCceE--EE----EecccccCh------HHHhhccCceeecccc
Q 017258 317 PAVNEV--YL----VWEDEAMSM------EERRMSSVKYQVHDET 349 (374)
Q Consensus 317 ~~~~~~--~~----~~~~~~~~~------~~~~~~~~~~~~~~~~ 349 (374)
|++|.. .| +|.||-+|- ++--..|-++.+|-|-
T Consensus 453 GTGNDLARtlnWGGgytDEPvSkil~~ve~gtvVqLDRW~lhvEp 497 (1004)
T KOG0782|consen 453 GTGNDLARTLNWGGGYTDEPVSKILQAVEHGTVVQLDRWRLHVEP 497 (1004)
T ss_pred CCcchHHHhcccCCCcCcchHHHHHHHHhcCcEEeeeeeeecccC
Confidence 667776 34 447887773 3344466777777654
No 156
>PF13878 zf-C2H2_3: zinc-finger of acetyl-transferase ESCO
Probab=35.35 E-value=30 Score=23.96 Aligned_cols=24 Identities=25% Similarity=0.239 Sum_probs=17.0
Q ss_pred ccccccCCCCCC--HHHHHHHHhhhc
Q 017258 76 TDIEIYGMQGIP--PDVLAAHYGEEE 99 (374)
Q Consensus 76 ~~C~iCgK~F~~--~s~L~~H~rth~ 99 (374)
..|..||+.|.. .++-+.|.+-|.
T Consensus 14 ~~C~~CgM~Y~~~~~eD~~~H~~yH~ 39 (41)
T PF13878_consen 14 TTCPTCGMLYSPGSPEDEKLHKKYHD 39 (41)
T ss_pred cCCCCCCCEECCCCHHHHHHHHHHHh
Confidence 578999988744 456677877664
No 157
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=35.30 E-value=5.2e+02 Score=26.61 Aligned_cols=22 Identities=18% Similarity=0.354 Sum_probs=11.4
Q ss_pred CCccccCcCC-CcccChHHHHHH
Q 017258 9 SSKVWCYYCD-REFDDEKILVQH 30 (374)
Q Consensus 9 gEKp~C~~Cg-K~Fs~~s~Lk~H 30 (374)
|.|+.|.+-+ -+|....+|..-
T Consensus 78 Grk~~~YvGNL~W~TTD~DL~~A 100 (498)
T KOG4849|consen 78 GRKYCCYVGNLLWYTTDADLLKA 100 (498)
T ss_pred CceEEEEecceeEEeccHHHHHH
Confidence 4444465533 345666666554
No 158
>PRK03564 formate dehydrogenase accessory protein FdhE; Provisional
Probab=35.02 E-value=19 Score=35.90 Aligned_cols=10 Identities=20% Similarity=0.717 Sum_probs=6.6
Q ss_pred ccccCcCCCc
Q 017258 11 KVWCYYCDRE 20 (374)
Q Consensus 11 Kp~C~~CgK~ 20 (374)
+.+|.+||..
T Consensus 187 ~~~CPvCGs~ 196 (309)
T PRK03564 187 RQFCPVCGSM 196 (309)
T ss_pred CCCCCCCCCc
Confidence 4558888754
No 159
>PF03604 DNA_RNApol_7kD: DNA directed RNA polymerase, 7 kDa subunit; InterPro: IPR006591 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Each class of RNA polymerase is assembled from 9 to 15 different polypeptides. Rbp10 (RNA polymerase CX) is a domain found in RNA polymerase subunit 10; present in RNA polymerase I, II and III.; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 2PMZ_Z 3HKZ_X 2NVX_L 3S1Q_L 2JA6_L 3S17_L 3HOW_L 3HOV_L 3PO2_L 3HOZ_L ....
Probab=35.01 E-value=24 Score=23.34 Aligned_cols=24 Identities=21% Similarity=0.616 Sum_probs=10.9
Q ss_pred cCcCCCcccChHHHHHHhhcCccccccCccc
Q 017258 14 CYYCDREFDDEKILVQHQKAKHFKCHVCHKK 44 (374)
Q Consensus 14 C~~CgK~Fs~~s~Lk~H~ReKPfkC~~CgK~ 44 (374)
|..|+..|..+. .-+-+|..||.+
T Consensus 3 C~~Cg~~~~~~~-------~~~irC~~CG~R 26 (32)
T PF03604_consen 3 CGECGAEVELKP-------GDPIRCPECGHR 26 (32)
T ss_dssp ESSSSSSE-BST-------SSTSSBSSSS-S
T ss_pred CCcCCCeeEcCC-------CCcEECCcCCCe
Confidence 666666554211 223456666544
No 160
>COG3357 Predicted transcriptional regulator containing an HTH domain fused to a Zn-ribbon [Transcription]
Probab=34.92 E-value=15 Score=30.18 Aligned_cols=15 Identities=13% Similarity=0.496 Sum_probs=13.2
Q ss_pred cCccccccCccccCC
Q 017258 33 AKHFKCHVCHKKLST 47 (374)
Q Consensus 33 eKPfkC~~CgK~Fs~ 47 (374)
.+|-+|..||..|.+
T Consensus 56 v~Pa~CkkCGfef~~ 70 (97)
T COG3357 56 VRPARCKKCGFEFRD 70 (97)
T ss_pred ecChhhcccCccccc
Confidence 678899999999877
No 161
>PF09723 Zn-ribbon_8: Zinc ribbon domain; InterPro: IPR013429 This entry represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB []. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=34.47 E-value=8.3 Score=26.77 Aligned_cols=12 Identities=17% Similarity=0.886 Sum_probs=5.5
Q ss_pred cccccCccccCC
Q 017258 36 FKCHVCHKKLST 47 (374)
Q Consensus 36 fkC~~CgK~Fs~ 47 (374)
|+|..||..|..
T Consensus 6 y~C~~Cg~~fe~ 17 (42)
T PF09723_consen 6 YRCEECGHEFEV 17 (42)
T ss_pred EEeCCCCCEEEE
Confidence 444444444443
No 162
>TIGR00622 ssl1 transcription factor ssl1. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=34.25 E-value=20 Score=30.53 Aligned_cols=46 Identities=17% Similarity=0.458 Sum_probs=33.9
Q ss_pred ccCcCCCcccChHHHHHH-hh-cCccccccCccccCCchhhHHHHhhh
Q 017258 13 WCYYCDREFDDEKILVQH-QK-AKHFKCHVCHKKLSTAGGMAIHVLQV 58 (374)
Q Consensus 13 ~C~~CgK~Fs~~s~Lk~H-~R-eKPfkC~~CgK~Fs~~s~L~rH~r~h 58 (374)
.|.-|++.|........- .. ...|+|..|.+.|...-++..|...|
T Consensus 57 ~C~~C~~~f~~~~~~~~~~~~~~~~y~C~~C~~~FC~dCD~fiHe~Lh 104 (112)
T TIGR00622 57 FCFGCQGPFPKPPVSPFDELKDSHRYVCAVCKNVFCVDCDVFVHESLH 104 (112)
T ss_pred cccCcCCCCCCcccccccccccccceeCCCCCCccccccchhhhhhcc
Confidence 499999999865321111 11 45799999999999999999998544
No 163
>PRK03824 hypA hydrogenase nickel incorporation protein; Provisional
Probab=34.04 E-value=16 Score=31.81 Aligned_cols=10 Identities=30% Similarity=0.796 Sum_probs=5.4
Q ss_pred cCcCCCcccC
Q 017258 14 CYYCDREFDD 23 (374)
Q Consensus 14 C~~CgK~Fs~ 23 (374)
|..||..|..
T Consensus 73 C~~CG~~~~~ 82 (135)
T PRK03824 73 CRNCGNEWSL 82 (135)
T ss_pred CCCCCCEEec
Confidence 5555555543
No 164
>KOG1701 consensus Focal adhesion adaptor protein Paxillin and related LIM proteins [Signal transduction mechanisms]
Probab=32.90 E-value=12 Score=38.82 Aligned_cols=12 Identities=17% Similarity=-0.039 Sum_probs=9.5
Q ss_pred cccccccCCCCC
Q 017258 75 STDIEIYGMQGI 86 (374)
Q Consensus 75 ~~~C~iCgK~F~ 86 (374)
-|+||.||+...
T Consensus 427 CY~CEDCg~~LS 438 (468)
T KOG1701|consen 427 CYKCEDCGLLLS 438 (468)
T ss_pred ceehhhcCcccc
Confidence 388999998765
No 165
>COG4957 Predicted transcriptional regulator [Transcription]
Probab=32.73 E-value=32 Score=30.40 Aligned_cols=21 Identities=19% Similarity=0.368 Sum_probs=15.5
Q ss_pred CCccc-cCcCCCcccChHHHHHHhh
Q 017258 9 SSKVW-CYYCDREFDDEKILVQHQK 32 (374)
Q Consensus 9 gEKp~-C~~CgK~Fs~~s~Lk~H~R 32 (374)
..-+- |-+|||.|. .|++|.+
T Consensus 73 tpD~IicLEDGkkfK---SLKRHL~ 94 (148)
T COG4957 73 TPDYIICLEDGKKFK---SLKRHLT 94 (148)
T ss_pred CCCeEEEeccCcchH---HHHHHHh
Confidence 33344 999999995 5778866
No 166
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=32.17 E-value=19 Score=40.01 Aligned_cols=43 Identities=19% Similarity=0.446 Sum_probs=23.0
Q ss_pred cCcCCCcccC---hHHHHHHhhcCccccccCccccCCchhhHHHHhhhccCccccCCCCCC
Q 017258 14 CYYCDREFDD---EKILVQHQKAKHFKCHVCHKKLSTAGGMAIHVLQVHKENVTKVPNAKP 71 (374)
Q Consensus 14 C~~CgK~Fs~---~s~Lk~H~ReKPfkC~~CgK~Fs~~s~L~rH~r~hH~ekp~~cp~~kp 71 (374)
|..||..|.. ...|.-|+..+-.+|++|| ++...+..|++|..
T Consensus 438 C~~Cg~v~~Cp~Cd~~lt~H~~~~~L~CH~Cg---------------~~~~~p~~Cp~Cgs 483 (730)
T COG1198 438 CRDCGYIAECPNCDSPLTLHKATGQLRCHYCG---------------YQEPIPQSCPECGS 483 (730)
T ss_pred cccCCCcccCCCCCcceEEecCCCeeEeCCCC---------------CCCCCCCCCCCCCC
Confidence 8889876531 1223333333334444443 34455678888754
No 167
>PRK12380 hydrogenase nickel incorporation protein HybF; Provisional
Probab=31.53 E-value=20 Score=30.27 Aligned_cols=10 Identities=30% Similarity=1.378 Sum_probs=4.9
Q ss_pred ccCcCCCccc
Q 017258 13 WCYYCDREFD 22 (374)
Q Consensus 13 ~C~~CgK~Fs 22 (374)
+|..|+..|.
T Consensus 72 ~C~~Cg~~~~ 81 (113)
T PRK12380 72 WCWDCSQVVE 81 (113)
T ss_pred EcccCCCEEe
Confidence 3555554443
No 168
>TIGR00280 L37a ribosomal protein L37a. This model finds eukaryotic ribosomal protein L37a and its archaeal orthologs. The nomeclature is tricky because eukaryotes have proteins called both L37 and L37a.
Probab=31.48 E-value=16 Score=30.08 Aligned_cols=12 Identities=33% Similarity=0.838 Sum_probs=9.6
Q ss_pred cCccccccCccc
Q 017258 33 AKHFKCHVCHKK 44 (374)
Q Consensus 33 eKPfkC~~CgK~ 44 (374)
...|.|.+|++.
T Consensus 33 ~a~y~CpfCgk~ 44 (91)
T TIGR00280 33 KAKYVCPFCGKK 44 (91)
T ss_pred hcCccCCCCCCC
Confidence 567899999865
No 169
>smart00734 ZnF_Rad18 Rad18-like CCHC zinc finger. Yeast Rad18p functions with Rad5p in error-free post-replicative DNA repair. This zinc finger is likely to bind nucleic-acids.
Probab=31.41 E-value=39 Score=21.10 Aligned_cols=18 Identities=33% Similarity=0.646 Sum_probs=11.9
Q ss_pred cCcCCCcccChHHHHHHhh
Q 017258 14 CYYCDREFDDEKILVQHQK 32 (374)
Q Consensus 14 C~~CgK~Fs~~s~Lk~H~R 32 (374)
|.+|++.+ ....+.+|..
T Consensus 4 CPiC~~~v-~~~~in~HLD 21 (26)
T smart00734 4 CPVCFREV-PENLINSHLD 21 (26)
T ss_pred CCCCcCcc-cHHHHHHHHH
Confidence 77777777 4456666653
No 170
>KOG4215 consensus Hepatocyte nuclear factor 4 and similar steroid hormone receptors [Transcription]
Probab=31.27 E-value=8.7 Score=39.12 Aligned_cols=39 Identities=26% Similarity=0.468 Sum_probs=24.9
Q ss_pred cCcCCCcccChHHHHHHhh------------cCccccccCccccCCchhhHH
Q 017258 14 CYYCDREFDDEKILVQHQK------------AKHFKCHVCHKKLSTAGGMAI 53 (374)
Q Consensus 14 C~~CgK~Fs~~s~Lk~H~R------------eKPfkC~~CgK~Fs~~s~L~r 53 (374)
|.-| |.|.+++.+++|+- .|.-.|.+|+-.=+-+..+++
T Consensus 39 CdGC-KGFFRRSVrk~~~YtCRF~k~C~VDKdkRNaCRyCRfqKC~~aGMK~ 89 (432)
T KOG4215|consen 39 CDGC-KGFFRRSVRKNHQYTCRFNKQCVVDKDKRNACRYCRFQKCVRAGMKR 89 (432)
T ss_pred cCcc-hHHHHHHHHhcceeeeeccccccccchhhhhhhHhhHHHHHHhcccH
Confidence 7778 67888999999965 334457777543333344443
No 171
>PF06524 NOA36: NOA36 protein; InterPro: IPR010531 This family consists of several NOA36 proteins which contain 29 highly conserved cysteine residues. The function of this protein is unknown.; GO: 0008270 zinc ion binding, 0005634 nucleus
Probab=31.06 E-value=25 Score=34.36 Aligned_cols=82 Identities=18% Similarity=0.325 Sum_probs=44.9
Q ss_pred CCCccc-cCcCCCcccChHHHHHHhh------cCccccccCccccCCchhhH-------HHHhhhccCccccCCCCCCCC
Q 017258 8 VSSKVW-CYYCDREFDDEKILVQHQK------AKHFKCHVCHKKLSTAGGMA-------IHVLQVHKENVTKVPNAKPGR 73 (374)
Q Consensus 8 ~gEKp~-C~~CgK~Fs~~s~Lk~H~R------eKPfkC~~CgK~Fs~~s~L~-------rH~r~hH~ekp~~cp~~kpgr 73 (374)
+|.|.| |.+|+.... ....-.|+. .--|||..|.+. .+-+-|+ .|+|.. .++-.. .
T Consensus 138 hGGrif~CsfC~~flC-EDDQFEHQAsCQvLe~E~~KC~SCNrl-Gq~sCLRCK~cfCddHvrrK----g~ky~k----~ 207 (314)
T PF06524_consen 138 HGGRIFKCSFCDNFLC-EDDQFEHQASCQVLESETFKCQSCNRL-GQYSCLRCKICFCDDHVRRK----GFKYEK----G 207 (314)
T ss_pred CCCeEEEeecCCCeee-ccchhhhhhhhhhhhcccccccccccc-cchhhhheeeeehhhhhhhc----cccccc----C
Confidence 356677 999986443 333344544 445888887643 2222332 344332 111111 1
Q ss_pred CcccccccCCCCCCHHHHHHHHhhhc
Q 017258 74 ESTDIEIYGMQGIPPDVLAAHYGEEE 99 (374)
Q Consensus 74 ~~~~C~iCgK~F~~~s~L~~H~rth~ 99 (374)
+.+.|..||.......+|..-.|+|.
T Consensus 208 k~~PCPKCg~et~eTkdLSmStR~hk 233 (314)
T PF06524_consen 208 KPIPCPKCGYETQETKDLSMSTRSHK 233 (314)
T ss_pred CCCCCCCCCCcccccccceeeeecch
Confidence 23788899877777667765555554
No 172
>PF02176 zf-TRAF: TRAF-type zinc finger; PDB: 2EOD_A 2YUC_A 3HCU_A 3HCS_B 3HCT_A.
Probab=30.42 E-value=19 Score=26.09 Aligned_cols=33 Identities=21% Similarity=0.558 Sum_probs=15.5
Q ss_pred cCc--CCCcccChHHHHHHhh----cCcccccc----CccccCC
Q 017258 14 CYY--CDREFDDEKILVQHQK----AKHFKCHV----CHKKLST 47 (374)
Q Consensus 14 C~~--CgK~Fs~~s~Lk~H~R----eKPfkC~~----CgK~Fs~ 47 (374)
|.. |.+.+.+ ..|..|.. .+...|.+ |...|.+
T Consensus 12 C~~~cc~~~i~r-~~l~~H~~~~C~~~~v~C~~~~~GC~~~~~~ 54 (60)
T PF02176_consen 12 CPNGCCNEMIPR-KELDDHLENECPKRPVPCPYSPYGCKERVPR 54 (60)
T ss_dssp -TT--S-BEEEC-CCHHHHHHTTSTTSEEE-SS----S--EEEH
T ss_pred CCCCCcccceeH-HHHHHHHHccCCCCcEECCCCCCCCCCccch
Confidence 665 4444543 45666666 45556666 6665544
No 173
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=30.30 E-value=6.2e+02 Score=26.04 Aligned_cols=16 Identities=31% Similarity=0.667 Sum_probs=10.4
Q ss_pred CCCCCCccccCCCCCC
Q 017258 301 SIGPPPVIANKAPATQ 316 (374)
Q Consensus 301 ~~~~~~~~~~~~p~~~ 316 (374)
+.|++|..+++.++.-
T Consensus 327 s~GppP~~~~~~~pPy 342 (498)
T KOG4849|consen 327 SMGPPPQMNTAMRPPY 342 (498)
T ss_pred cCCCCCCCccCCCCCC
Confidence 4677777777765543
No 174
>PF10537 WAC_Acf1_DNA_bd: ATP-utilising chromatin assembly and remodelling N-terminal; InterPro: IPR013136 ACF (for ATP-utilising chromatin assembly and remodeling factor) is a chromatin-remodeling complex that catalyzes the ATP-dependent assembly of periodic nucleosome arrays. This reaction utilises the energy of ATP hydrolysis by ISWI, the smaller of the two subunits of ACF. Acf1, the large subunit of ACF, is essential for the full activity of the complex. The WAC (WSTF/Acf1/cbp146) domain is an ~110-residue module present at the N-termini of Acf1-related proteins in a variety of organisms. It is found in association with other domains such as the bromodomain, the PHD-type zinc finger, DDT or WAKS. The DNA-binding region of Acf1 includes the WAC domain, which is necessary for the efficient binding of ACF complex to DNA. It seems probable that the WAC domain will be involved in DNA binding in other related factors [, ]. Some proteins known to contain a WAC domain are the Drosophila melanogaster (Fruit fly) ATP-dependent chromatin assembly factor large subunit Acf1, human WSTF (Williams syndrome transcription factor), mouse cbp146, yeast imitation switch two complex protein 1 (ITC1 or YGL133w), and yeast protein YPL216w.
Probab=30.22 E-value=47 Score=27.74 Aligned_cols=42 Identities=12% Similarity=0.263 Sum_probs=31.4
Q ss_pred cccCcCCCcccChHHHHHHhh---cCccccccCccc-cCCchhhHH
Q 017258 12 VWCYYCDREFDDEKILVQHQK---AKHFKCHVCHKK-LSTAGGMAI 53 (374)
Q Consensus 12 p~C~~CgK~Fs~~s~Lk~H~R---eKPfkC~~CgK~-Fs~~s~L~r 53 (374)
++|..-|..|.+...+...+. .+-|.|.+.||. ++....|..
T Consensus 4 f~i~~T~EiF~dYe~Y~~R~~~y~~~vwtC~~TGk~~LTy~eAl~S 49 (102)
T PF10537_consen 4 FYIPFTGEIFRDYEEYLKRMILYNQRVWTCEITGKSNLTYFEALES 49 (102)
T ss_pred EEeCCCCcccCCHHHHHHHHHHHhCCeeEEecCCCCCCCHHHHHHH
Confidence 449999999999888877776 788999998874 333344443
No 175
>PF15269 zf-C2H2_7: Zinc-finger
Probab=29.71 E-value=29 Score=24.95 Aligned_cols=21 Identities=19% Similarity=0.422 Sum_probs=15.4
Q ss_pred cccccCccccCCchhhHHHHh
Q 017258 36 FKCHVCHKKLSTAGGMAIHVL 56 (374)
Q Consensus 36 fkC~~CgK~Fs~~s~L~rH~r 56 (374)
|+|-.|..+...++.|..|++
T Consensus 21 ykcfqcpftc~~kshl~nhmk 41 (54)
T PF15269_consen 21 YKCFQCPFTCNEKSHLFNHMK 41 (54)
T ss_pred ceeecCCcccchHHHHHHHHH
Confidence 467777777777788877774
No 176
>KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification]
Probab=29.69 E-value=36 Score=37.64 Aligned_cols=13 Identities=31% Similarity=0.779 Sum_probs=10.0
Q ss_pred cccccCccccCCc
Q 017258 36 FKCHVCHKKLSTA 48 (374)
Q Consensus 36 fkC~~CgK~Fs~~ 48 (374)
-+|..|+|.|++.
T Consensus 75 ~kc~~c~Kwfcn~ 87 (935)
T KOG1802|consen 75 IKCNTCGKWFCNS 87 (935)
T ss_pred eeccccCceeecC
Confidence 4688899988763
No 177
>KOG3815 consensus Transcription factor Doublesex [Transcription]
Probab=29.16 E-value=21 Score=35.64 Aligned_cols=43 Identities=19% Similarity=0.273 Sum_probs=30.4
Q ss_pred CCccccCcCCCcccChHHHHHHhh---cCccccccCccccCCchhhH
Q 017258 9 SSKVWCYYCDREFDDEKILVQHQK---AKHFKCHVCHKKLSTAGGMA 52 (374)
Q Consensus 9 gEKp~C~~CgK~Fs~~s~Lk~H~R---eKPfkC~~CgK~Fs~~s~L~ 52 (374)
..++||..|.. +...+.||-|.| -|...|.+|..-..++..+.
T Consensus 34 ~r~p~CaRCrn-HG~~~~LKGHk~~C~~~~C~C~kC~li~eRqrvma 79 (322)
T KOG3815|consen 34 ARGPKCARCEN-HGVLSRLKGHKRSCPYRDCPCEKCGLVEERRRVMA 79 (322)
T ss_pred cccchhhhhhc-cCcceeccCCCCCCCCCCCCchHhcchHHHHHHHH
Confidence 34567998854 445677899988 56677888988777765544
No 178
>KOG2807 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription; Replication, recombination and repair]
Probab=28.86 E-value=73 Score=32.14 Aligned_cols=77 Identities=10% Similarity=0.039 Sum_probs=49.0
Q ss_pred cccCcCCCcccChHHHHHHhhcCccccccCccccCCchhhHHHHhhhc-cCc---------------cccCCCCCCCCCc
Q 017258 12 VWCYYCDREFDDEKILVQHQKAKHFKCHVCHKKLSTAGGMAIHVLQVH-KEN---------------VTKVPNAKPGRES 75 (374)
Q Consensus 12 p~C~~CgK~Fs~~s~Lk~H~ReKPfkC~~CgK~Fs~~s~L~rH~r~hH-~ek---------------p~~cp~~kpgr~~ 75 (374)
|+|..|.-... .-|-.|..|+-++...-+|.|-.+ |. --+ -|.|.........
T Consensus 277 y~CP~CkakvC----------sLP~eCpiC~ltLVss~hLARSyh-hL~PL~~F~Eip~~~~~~~~~Cf~C~~~~~~~~~ 345 (378)
T KOG2807|consen 277 YFCPQCKAKVC----------SLPIECPICSLTLVSSPHLARSYH-HLFPLKPFVEIPETEYNGSRFCFACQGELLSSGR 345 (378)
T ss_pred eeCCcccCeee----------cCCccCCccceeEecchHHHHHHH-hhcCCcchhhccccccCCCcceeeeccccCCCCc
Confidence 45777754322 457789999999999888887652 21 111 1333211222334
Q ss_pred ccccccCCCCCCHHHHHHHHhhhc
Q 017258 76 TDIEIYGMQGIPPDVLAAHYGEEE 99 (374)
Q Consensus 76 ~~C~iCgK~F~~~s~L~~H~rth~ 99 (374)
|.|+.|...|--.-+.-.|...|.
T Consensus 346 y~C~~Ck~~FCldCDv~iHesLh~ 369 (378)
T KOG2807|consen 346 YRCESCKNVFCLDCDVFIHESLHN 369 (378)
T ss_pred EEchhccceeeccchHHHHhhhhc
Confidence 999999999987777778876663
No 179
>PF13240 zinc_ribbon_2: zinc-ribbon domain
Probab=28.78 E-value=28 Score=21.18 Aligned_cols=8 Identities=38% Similarity=0.941 Sum_probs=3.7
Q ss_pred cCcCCCcc
Q 017258 14 CYYCDREF 21 (374)
Q Consensus 14 C~~CgK~F 21 (374)
|..||+..
T Consensus 2 Cp~CG~~~ 9 (23)
T PF13240_consen 2 CPNCGAEI 9 (23)
T ss_pred CcccCCCC
Confidence 44555433
No 180
>KOG4477 consensus RING1 interactor RYBP and related Zn-finger-containing proteins [Transcription]
Probab=28.69 E-value=27 Score=32.36 Aligned_cols=26 Identities=38% Similarity=1.049 Sum_probs=17.1
Q ss_pred CCccc-cCcCCCcccChHHHHHHhhcCccccccCccc
Q 017258 9 SSKVW-CYYCDREFDDEKILVQHQKAKHFKCHVCHKK 44 (374)
Q Consensus 9 gEKp~-C~~CgK~Fs~~s~Lk~H~ReKPfkC~~CgK~ 44 (374)
.|.+| |.+|. |... .--|+|.+|+-+
T Consensus 21 Deg~WdCsvCT--FrNs--------AeAfkC~vCdvR 47 (228)
T KOG4477|consen 21 DEGKWDCSVCT--FRNS--------AEAFKCFVCDVR 47 (228)
T ss_pred ccCceeeeeee--ecch--------hhhhheeeeccc
Confidence 45567 99995 5433 336889888753
No 181
>TIGR01562 FdhE formate dehydrogenase accessory protein FdhE. The only sequence scoring between trusted and noise is that from Aquifex aeolicus, which shows certain structural differences from the proteobacterial forms in the alignment. However it is notable that A. aeolicus also has a sequence scoring above trusted to the alpha subunit of formate dehydrogenase (TIGR01553).
Probab=28.55 E-value=50 Score=32.92 Aligned_cols=10 Identities=20% Similarity=0.637 Sum_probs=6.1
Q ss_pred ccccCcCCCc
Q 017258 11 KVWCYYCDRE 20 (374)
Q Consensus 11 Kp~C~~CgK~ 20 (374)
+.+|.+||..
T Consensus 184 ~~~CPvCGs~ 193 (305)
T TIGR01562 184 RTLCPACGSP 193 (305)
T ss_pred CCcCCCCCCh
Confidence 4457777754
No 182
>PF13821 DUF4187: Domain of unknown function (DUF4187)
Probab=28.51 E-value=38 Score=25.10 Aligned_cols=29 Identities=17% Similarity=0.328 Sum_probs=17.1
Q ss_pred HHHHHhhcCccccccCccccCCchhhHHH
Q 017258 26 ILVQHQKAKHFKCHVCHKKLSTAGGMAIH 54 (374)
Q Consensus 26 ~Lk~H~ReKPfkC~~CgK~Fs~~s~L~rH 54 (374)
.|..++|.+.+=|-.||..|.....|.++
T Consensus 18 ~l~~YLR~~~~YC~~Cg~~Y~d~~dL~~~ 46 (55)
T PF13821_consen 18 KLLSYLREEHNYCFWCGTKYDDEEDLERN 46 (55)
T ss_pred HHHHHHHhhCceeeeeCCccCCHHHHHhC
Confidence 34444555566666676666666666544
No 183
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=28.21 E-value=40 Score=35.76 Aligned_cols=52 Identities=19% Similarity=0.261 Sum_probs=0.0
Q ss_pred CCCCCccc-cCcCCCcccChHHHHHHhhcCccccccCccccCCchhhHHHHhhhccCccccCCCC-CCCCCcccccccC
Q 017258 6 KRVSSKVW-CYYCDREFDDEKILVQHQKAKHFKCHVCHKKLSTAGGMAIHVLQVHKENVTKVPNA-KPGRESTDIEIYG 82 (374)
Q Consensus 6 ~~~gEKp~-C~~CgK~Fs~~s~Lk~H~ReKPfkC~~CgK~Fs~~s~L~rH~r~hH~ekp~~cp~~-kpgr~~~~C~iCg 82 (374)
++.--... |..||..+ +|..|+ ..+..|..+....|+.| +...-...|..||
T Consensus 207 rrGya~~~~C~~Cg~~~---------------~C~~C~----------~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~C~ 260 (505)
T TIGR00595 207 RRGYSKNLLCRSCGYIL---------------CCPNCD----------VSLTYHKKEGKLRCHYCGYQEPIPKTCPQCG 260 (505)
T ss_pred CCcCCCeeEhhhCcCcc---------------CCCCCC----------CceEEecCCCeEEcCCCcCcCCCCCCCCCCC
No 184
>PRK04860 hypothetical protein; Provisional
Probab=27.89 E-value=39 Score=30.45 Aligned_cols=32 Identities=6% Similarity=-0.065 Sum_probs=25.5
Q ss_pred cccccccCCCCCCHHHHHHHHhhhcCCCcccccccc
Q 017258 75 STDIEIYGMQGIPPDVLAAHYGEEEEEVPSKMAKVD 110 (374)
Q Consensus 75 ~~~C~iCgK~F~~~s~L~~H~rth~ge~~~k~~k~~ 110 (374)
.|.|. |++ ....+++|.++|.++...+..+..
T Consensus 119 ~Y~C~-C~~---~~~~~rrH~ri~~g~~~YrC~~C~ 150 (160)
T PRK04860 119 PYRCK-CQE---HQLTVRRHNRVVRGEAVYRCRRCG 150 (160)
T ss_pred EEEcC-CCC---eeCHHHHHHHHhcCCccEECCCCC
Confidence 38998 987 566789999999998877765544
No 185
>COG1592 Rubrerythrin [Energy production and conversion]
Probab=27.73 E-value=37 Score=30.88 Aligned_cols=10 Identities=30% Similarity=0.727 Sum_probs=7.2
Q ss_pred ccccccCccc
Q 017258 35 HFKCHVCHKK 44 (374)
Q Consensus 35 PfkC~~CgK~ 44 (374)
-|.|.+||..
T Consensus 134 ~~vC~vCGy~ 143 (166)
T COG1592 134 VWVCPVCGYT 143 (166)
T ss_pred EEEcCCCCCc
Confidence 3888888754
No 186
>PRK13659 hypothetical protein; Provisional
Probab=27.68 E-value=23 Score=29.55 Aligned_cols=33 Identities=33% Similarity=0.526 Sum_probs=25.0
Q ss_pred cccccChHHHhhccCceeeccccc------------ccchhHHHHHhh
Q 017258 327 EDEAMSMEERRMSSVKYQVHDETS------------QMSSIDAAIDRR 362 (374)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~ 362 (374)
-|.+||-|.-|++--.+ |||. +..-+|.|||.|
T Consensus 28 gd~alskE~ARqskEQW---d~Tr~LR~KVN~R~EKefDK~D~A~D~r 72 (103)
T PRK13659 28 GDSALSKEQARQSKEQW---NDTRSLRQKVNKRVEKEFDKADRAFDNR 72 (103)
T ss_pred CCccccHHHHHHHHHHH---HHHHHHHHHHhhHHHhhhhHHHHhhhhH
Confidence 48899999999985433 6665 355689999976
No 187
>PF07754 DUF1610: Domain of unknown function (DUF1610); InterPro: IPR011668 This domain is found in archaeal species. It is likely to bind zinc via its four well-conserved cysteine residues.
Probab=27.64 E-value=35 Score=21.23 Aligned_cols=8 Identities=38% Similarity=0.982 Sum_probs=4.6
Q ss_pred ccccccCc
Q 017258 35 HFKCHVCH 42 (374)
Q Consensus 35 PfkC~~Cg 42 (374)
.|.|..||
T Consensus 16 ~f~CPnCG 23 (24)
T PF07754_consen 16 PFPCPNCG 23 (24)
T ss_pred eEeCCCCC
Confidence 45566655
No 188
>TIGR00143 hypF [NiFe] hydrogenase maturation protein HypF. A previously described regulatory effect of HypF mutatation is attributable to loss of activity of a regulatory hydrogenase. A zinc finger-like region CXXCX(18)CXXCX(24)CXXCX(18)CXXC region further supported the regulatory hypothesis. However, more recent work (PUBMED:11375153) shows the direct effect is on the activity of expressed hydrogenases with nickel/iron centers, rather than on expression.
Probab=27.60 E-value=15 Score=40.71 Aligned_cols=12 Identities=25% Similarity=0.208 Sum_probs=7.4
Q ss_pred ceEEEEeccccc
Q 017258 320 NEVYLVWEDEAM 331 (374)
Q Consensus 320 ~~~~~~~~~~~~ 331 (374)
|-+-|.++|.++
T Consensus 373 nt~~l~~~~~~~ 384 (711)
T TIGR00143 373 NTFSLLKGGQAY 384 (711)
T ss_pred ceEEEEeCCEEE
Confidence 556666666654
No 189
>PF05301 Mec-17: Touch receptor neuron protein Mec-17; InterPro: IPR007965 Mec-17 is the protein product of one of the 18 genes required for the development and function of the touch receptor neuron for gentle touch. Mec-17 is specifically required for maintaining the differentiation of the touch receptor []. This family is conserved to higher eukaryotes.; GO: 0019799 tubulin N-acetyltransferase activity
Probab=27.56 E-value=51 Score=28.49 Aligned_cols=9 Identities=44% Similarity=0.782 Sum_probs=7.2
Q ss_pred EEEEecccc
Q 017258 322 VYLVWEDEA 330 (374)
Q Consensus 322 ~~~~~~~~~ 330 (374)
|||.||+|+
T Consensus 6 ~Yll~d~~~ 14 (120)
T PF05301_consen 6 LYLLKDSEA 14 (120)
T ss_pred EEEEEecCC
Confidence 588888886
No 190
>COG2888 Predicted Zn-ribbon RNA-binding protein with a function in translation [Translation, ribosomal structure and biogenesis]
Probab=27.53 E-value=45 Score=25.33 Aligned_cols=32 Identities=25% Similarity=0.412 Sum_probs=20.7
Q ss_pred cccCcCCCcccChHHHHHHhhcCccccccCccccCCch
Q 017258 12 VWCYYCDREFDDEKILVQHQKAKHFKCHVCHKKLSTAG 49 (374)
Q Consensus 12 p~C~~CgK~Fs~~s~Lk~H~ReKPfkC~~CgK~Fs~~s 49 (374)
..|.-||....-.+. .-.|.|..||+.--.+.
T Consensus 10 ~~CtSCg~~i~p~e~------~v~F~CPnCGe~~I~Rc 41 (61)
T COG2888 10 PVCTSCGREIAPGET------AVKFPCPNCGEVEIYRC 41 (61)
T ss_pred ceeccCCCEeccCCc------eeEeeCCCCCceeeehh
Confidence 349999877633222 34689999997655443
No 191
>PF07282 OrfB_Zn_ribbon: Putative transposase DNA-binding domain; InterPro: IPR010095 This entry represents a region of a sequence similarity between a family of putative transposases of Thermoanaerobacter tengcongensis, smaller related proteins from Bacillus anthracis, putative transposes described by IPR001959 from INTERPRO, and other proteins. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=27.33 E-value=31 Score=25.96 Aligned_cols=15 Identities=20% Similarity=0.614 Sum_probs=8.7
Q ss_pred cCccccccCccccCC
Q 017258 33 AKHFKCHVCHKKLST 47 (374)
Q Consensus 33 eKPfkC~~CgK~Fs~ 47 (374)
.+-|.|..||..+.+
T Consensus 44 ~r~~~C~~Cg~~~~r 58 (69)
T PF07282_consen 44 GRVFTCPNCGFEMDR 58 (69)
T ss_pred cceEEcCCCCCEECc
Confidence 556666666655443
No 192
>PF07975 C1_4: TFIIH C1-like domain; InterPro: IPR004595 All proteins in this domain for which functions are known are components of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair. It includes the yeast transcription factor Ssl1 (Suppressor of stem-loop protein 1) that is essential for translation initiation and affects UV resistance. The C-terminal region is essential for transcription activity. This regions binds three zinc atoms through two independent domain. The first contains a C4 zinc finger motif, whereas the second is characterised by a CX(2)CX(2-4)FCADCD motif. The solution structure of the second C-terminal domain revealed homology with the regulatory domain of protein kinase C [].; GO: 0006281 DNA repair, 0005634 nucleus; PDB: 1Z60_A.
Probab=27.23 E-value=18 Score=26.57 Aligned_cols=43 Identities=19% Similarity=0.498 Sum_probs=20.1
Q ss_pred cCcCCCcccChHHHHHHhhcCccccccCccccCCchhhHHHHhhh
Q 017258 14 CYYCDREFDDEKILVQHQKAKHFKCHVCHKKLSTAGGMAIHVLQV 58 (374)
Q Consensus 14 C~~CgK~Fs~~s~Lk~H~ReKPfkC~~CgK~Fs~~s~L~rH~r~h 58 (374)
|.-|.+.|.....-..- ...|+|..|++.|.-.-++-.|...|
T Consensus 2 CfgC~~~~~~~~~~~~~--~~~y~C~~C~~~FC~dCD~fiHE~LH 44 (51)
T PF07975_consen 2 CFGCQKPFPDGPEKKAD--SSRYRCPKCKNHFCIDCDVFIHETLH 44 (51)
T ss_dssp ETTTTEE-TTS---------EEE--TTTT--B-HHHHHTTTTTS-
T ss_pred CccCCCCCCCccccccc--CCeEECCCCCCccccCcChhhhcccc
Confidence 55577777654321100 34688888888888887777776443
No 193
>PF08972 DUF1902: Domain of unknown function (DUF1902); InterPro: IPR015066 Members of these prokaryotic proteins adopt a fold consisting of one alpha-helix and four beta-strands. Their function has not, as yet, been elucidated []. ; PDB: 1WV8_A.
Probab=27.17 E-value=38 Score=25.23 Aligned_cols=9 Identities=33% Similarity=0.955 Sum_probs=7.7
Q ss_pred EEEEecccc
Q 017258 322 VYLVWEDEA 330 (374)
Q Consensus 322 ~~~~~~~~~ 330 (374)
|-.+|||||
T Consensus 3 I~a~wD~EA 11 (54)
T PF08972_consen 3 IRAFWDEEA 11 (54)
T ss_dssp EEEEEETTT
T ss_pred EEEEEcCCC
Confidence 678999998
No 194
>KOG4167 consensus Predicted DNA-binding protein, contains SANT and ELM2 domains [Transcription]
Probab=26.84 E-value=14 Score=40.71 Aligned_cols=24 Identities=21% Similarity=0.380 Sum_probs=17.3
Q ss_pred cccccCccccCCchhhHHHHhhhc
Q 017258 36 FKCHVCHKKLSTAGGMAIHVLQVH 59 (374)
Q Consensus 36 fkC~~CgK~Fs~~s~L~rH~r~hH 59 (374)
|-|..|+|.|..-.++.-|+++|.
T Consensus 793 FpCreC~kvF~KiKSrNAHMK~Hr 816 (907)
T KOG4167|consen 793 FPCRECGKVFFKIKSRNAHMKTHR 816 (907)
T ss_pred eehHHHHHHHHHHhhhhHHHHHHH
Confidence 678888887777666777776664
No 195
>TIGR01206 lysW lysine biosynthesis protein LysW. This very small, poorly characterized protein has been shown essential in Thermus thermophilus for an unusual pathway of Lys biosynthesis from aspartate by way of alpha-aminoadipate (AAA) rather than diaminopimelate. It is found also in Deinococcus radiodurans and Pyrococcus horikoshii, which appear to share the AAA pathway.
Probab=26.47 E-value=20 Score=26.64 Aligned_cols=12 Identities=25% Similarity=0.786 Sum_probs=8.5
Q ss_pred cccccCccccCC
Q 017258 36 FKCHVCHKKLST 47 (374)
Q Consensus 36 fkC~~CgK~Fs~ 47 (374)
|+|..||..+.-
T Consensus 3 ~~CP~CG~~iev 14 (54)
T TIGR01206 3 FECPDCGAEIEL 14 (54)
T ss_pred cCCCCCCCEEec
Confidence 678888876644
No 196
>PF02146 SIR2: Sir2 family; InterPro: IPR003000 These sequences represent the Sirtuin (Sir2-related) family of NAD+-dependent deacetylases. This family of enzymes is broadly conserved from bacteria to humans. In yeast, Sir2 proteins form complexes with other proteins to silence chromatin by accessing histones and deacetylating them. Sir2 proteins have been proposed to play a role in silencing, chromosome stability and ageing []. The bacterial enzyme CobB, an homologue of Sir2, is a phosphoribosyltransferase []. An in vitro ADP ribosyltransferase activity has also been associated with human members of this family []. Sir2-like enzymes employ NAD+ as a cosubstrate in deacetylation reactions [] and catalyse a reaction in which the cleavage of NAD(+)and histone and/or protein deacetylation are coupled to the formation of O-acetyl-ADP-ribose, a novel metabolite. The dependence of the reaction on both NAD(+) and the generation of this potential second messenger offers new clues to understanding the function and regulation of nuclear, cytoplasmic and mitochondrial Sir2-like enzymes []. Silent Information Regulator protein of Saccharomyces cerevisiae (Sir2) is one of several factors critical for silencing at least three loci. Among them, it is unique because it silences the rDNA as well as the mating type loci and telomeres []. Sir2 interacts in a complex with itself and with Sir3 and Sir4, two proteins that are able to interact with nucleosomes. In addition Sir2 also interacts with ubiquitination factors and/or complexes []. Homologues of Sir2 share a core domain including the GAG and NID motifs and a putative C4 Zinc finger. The regions containing these three conserved motifs are individually essential for Sir2 silencing function, as are the four cysteins []. In addition, the conserved residues HG next to the putative Zn finger have been shown to be essential for the ADP ribosyltransferase activity []. ; GO: 0008270 zinc ion binding, 0070403 NAD+ binding, 0006476 protein deacetylation; PDB: 1S5P_A 3PKI_E 3PKJ_F 3K35_A 1ICI_A 1M2K_A 1M2G_A 1M2N_B 1M2H_A 1M2J_A ....
Probab=26.47 E-value=44 Score=29.95 Aligned_cols=29 Identities=28% Similarity=0.699 Sum_probs=14.5
Q ss_pred cCcCCCcccChHHHHHHhh-cCccccccCcc
Q 017258 14 CYYCDREFDDEKILVQHQK-AKHFKCHVCHK 43 (374)
Q Consensus 14 C~~CgK~Fs~~s~Lk~H~R-eKPfkC~~CgK 43 (374)
|..|++.|...... .... +..-+|..|+.
T Consensus 108 C~~C~~~~~~~~~~-~~~~~~~~~~C~~C~~ 137 (178)
T PF02146_consen 108 CSKCGKEYDREDIV-DSIDEEEPPRCPKCGG 137 (178)
T ss_dssp ETTTSBEEEGHHHH-HHHHTTSSCBCTTTSC
T ss_pred ecCCCccccchhhc-ccccccccccccccCc
Confidence 66666666543322 2222 33346666665
No 197
>KOG1729 consensus FYVE finger containing protein [General function prediction only]
Probab=26.08 E-value=27 Score=34.58 Aligned_cols=28 Identities=14% Similarity=0.344 Sum_probs=18.8
Q ss_pred ccCcCCCcccChHHHHHHhhcCccccccCccccCC
Q 017258 13 WCYYCDREFDDEKILVQHQKAKHFKCHVCHKKLST 47 (374)
Q Consensus 13 ~C~~CgK~Fs~~s~Lk~H~ReKPfkC~~CgK~Fs~ 47 (374)
.|.+|++.+.... +|.|.|..||.-|+.
T Consensus 170 ~C~~C~~~~Ftl~-------~RRHHCR~CG~ivC~ 197 (288)
T KOG1729|consen 170 ECMVCGCTEFTLS-------ERRHHCRNCGDIVCA 197 (288)
T ss_pred ecccCCCccccHH-------HHHHHHHhcchHhhh
Confidence 3999999433222 334459999988887
No 198
>PRK14890 putative Zn-ribbon RNA-binding protein; Provisional
Probab=26.07 E-value=45 Score=25.24 Aligned_cols=27 Identities=26% Similarity=0.479 Sum_probs=17.4
Q ss_pred cccCcCCCcccChHHHHHHhhcCccccccCccc
Q 017258 12 VWCYYCDREFDDEKILVQHQKAKHFKCHVCHKK 44 (374)
Q Consensus 12 p~C~~CgK~Fs~~s~Lk~H~ReKPfkC~~CgK~ 44 (374)
..|.-||+...-... .-.|.|..||+.
T Consensus 8 ~~CtSCg~~i~~~~~------~~~F~CPnCG~~ 34 (59)
T PRK14890 8 PKCTSCGIEIAPREK------AVKFLCPNCGEV 34 (59)
T ss_pred ccccCCCCcccCCCc------cCEeeCCCCCCe
Confidence 458888865543221 346889999887
No 199
>PF01780 Ribosomal_L37ae: Ribosomal L37ae protein family; InterPro: IPR002674 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This ribosomal protein is found in archaebacteria and eukaryotes []. Ribosomal protein L37 has a single zinc finger-like motif of the C2-C2 type [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 4A1E_Y 4A17_Y 4A1C_Y 4A1A_Y 3O58_g 3IZS_m 3O5H_g 1S1I_9 3IZR_m 1YSH_D ....
Probab=25.80 E-value=17 Score=29.75 Aligned_cols=12 Identities=25% Similarity=0.791 Sum_probs=9.4
Q ss_pred cCccccccCccc
Q 017258 33 AKHFKCHVCHKK 44 (374)
Q Consensus 33 eKPfkC~~CgK~ 44 (374)
...|.|.+||+.
T Consensus 33 ~~ky~Cp~Cgk~ 44 (90)
T PF01780_consen 33 HAKYTCPFCGKT 44 (90)
T ss_dssp HS-BEESSSSSS
T ss_pred hCCCcCCCCCCc
Confidence 678999999876
No 200
>TIGR00100 hypA hydrogenase nickel insertion protein HypA. In Hpylori, hypA mutant abolished hydrogenase activity and decrease in urease activity. Nickel supplementation in media restored urease activity and partial hydrogenase activity. HypA probably involved in inserting Ni in enzymes.
Probab=25.62 E-value=30 Score=29.27 Aligned_cols=12 Identities=25% Similarity=0.755 Sum_probs=5.6
Q ss_pred cccccCccccCC
Q 017258 36 FKCHVCHKKLST 47 (374)
Q Consensus 36 fkC~~CgK~Fs~ 47 (374)
++|..|++.|..
T Consensus 71 ~~C~~Cg~~~~~ 82 (115)
T TIGR00100 71 CECEDCSEEVSP 82 (115)
T ss_pred EEcccCCCEEec
Confidence 445555544433
No 201
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=25.47 E-value=25 Score=30.94 Aligned_cols=12 Identities=0% Similarity=-0.272 Sum_probs=7.2
Q ss_pred cccccCCCCCCH
Q 017258 77 DIEIYGMQGIPP 88 (374)
Q Consensus 77 ~C~iCgK~F~~~ 88 (374)
.|..|.-+|...
T Consensus 123 vCPvCkTSFKss 134 (140)
T PF05290_consen 123 VCPVCKTSFKSS 134 (140)
T ss_pred CCCccccccccc
Confidence 356666666554
No 202
>KOG3454 consensus U1 snRNP-specific protein C [RNA processing and modification]
Probab=25.31 E-value=30 Score=31.37 Aligned_cols=9 Identities=44% Similarity=1.412 Sum_probs=6.1
Q ss_pred ccccCcCCC
Q 017258 11 KVWCYYCDR 19 (374)
Q Consensus 11 Kp~C~~CgK 19 (374)
|+||++|+.
T Consensus 3 RYyCDYCdt 11 (165)
T KOG3454|consen 3 RYYCDYCDT 11 (165)
T ss_pred cchhhhhhh
Confidence 566777773
No 203
>KOG4167 consensus Predicted DNA-binding protein, contains SANT and ELM2 domains [Transcription]
Probab=24.97 E-value=15 Score=40.42 Aligned_cols=27 Identities=11% Similarity=-0.049 Sum_probs=23.9
Q ss_pred ccccccCCCCCCHHHHHHHHhhhcCCC
Q 017258 76 TDIEIYGMQGIPPDVLAAHYGEEEEEV 102 (374)
Q Consensus 76 ~~C~iCgK~F~~~s~L~~H~rth~ge~ 102 (374)
|.|..|+|.|..-..+..||++|.-..
T Consensus 793 FpCreC~kvF~KiKSrNAHMK~Hr~q~ 819 (907)
T KOG4167|consen 793 FPCRECGKVFFKIKSRNAHMKTHRQQE 819 (907)
T ss_pred eehHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 889999999999999999999986543
No 204
>PF08790 zf-LYAR: LYAR-type C2HC zinc finger ; InterPro: IPR014898 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This C2HC zinc finger domain is found in LYAR proteins such as Q08288 from SWISSPROT, which are involved in cell growth regulation. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1WJV_A.
Probab=24.84 E-value=23 Score=22.85 Aligned_cols=19 Identities=26% Similarity=0.616 Sum_probs=10.7
Q ss_pred cccccCccccCCchhhHHHH
Q 017258 36 FKCHVCHKKLSTAGGMAIHV 55 (374)
Q Consensus 36 fkC~~CgK~Fs~~s~L~rH~ 55 (374)
|.|-.|++.| .....+.|.
T Consensus 1 ~sCiDC~~~F-~~~~y~~Ht 19 (28)
T PF08790_consen 1 FSCIDCSKDF-DGDSYKSHT 19 (28)
T ss_dssp EEETTTTEEE-EGGGTTT--
T ss_pred CeeecCCCCc-CcCCcCCCC
Confidence 4577777777 444555555
No 205
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=24.54 E-value=1e+03 Score=27.02 Aligned_cols=11 Identities=36% Similarity=0.498 Sum_probs=5.3
Q ss_pred CCCCCCHHHHH
Q 017258 82 GMQGIPPDVLA 92 (374)
Q Consensus 82 gK~F~~~s~L~ 92 (374)
|-.++..+.|.
T Consensus 510 GVt~IP~~kLt 520 (894)
T KOG0132|consen 510 GVTYIPWEKLT 520 (894)
T ss_pred CeeEeehHhcC
Confidence 44555544443
No 206
>COG0078 ArgF Ornithine carbamoyltransferase [Amino acid transport and metabolism]
Probab=24.52 E-value=40 Score=33.61 Aligned_cols=31 Identities=39% Similarity=0.578 Sum_probs=21.3
Q ss_pred EEEEecccccCh------HHHhhccCc-eeeccccccc
Q 017258 322 VYLVWEDEAMSM------EERRMSSVK-YQVHDETSQM 352 (374)
Q Consensus 322 ~~~~~~~~~~~~------~~~~~~~~~-~~~~~~~~~~ 352 (374)
+-+|++|--.|| ||||..|-+ |||-+|-...
T Consensus 222 ADvvyTDvWvSMGee~e~~~~~~~~~~~yQVn~~lm~~ 259 (310)
T COG0078 222 ADVVYTDVWVSMGEEAEAEERRIAFLPPYQVNEELMAL 259 (310)
T ss_pred CCEEEecCcccCcchhhhHHHHHhhCCCceeCHHHHhh
Confidence 346777777776 555655555 9999887654
No 207
>KOG3408 consensus U1-like Zn-finger-containing protein, probabl erole in RNA processing/splicing [RNA processing and modification]
Probab=24.51 E-value=43 Score=29.00 Aligned_cols=28 Identities=18% Similarity=0.106 Sum_probs=24.0
Q ss_pred CCCCCcccccccCCCCCCHHHHHHHHhh
Q 017258 70 KPGRESTDIEIYGMQGIPPDVLAAHYGE 97 (374)
Q Consensus 70 kpgr~~~~C~iCgK~F~~~s~L~~H~rt 97 (374)
.+|---|.|-.|.+-|++...|..|.++
T Consensus 52 lPG~GqfyCi~CaRyFi~~~~l~~H~kt 79 (129)
T KOG3408|consen 52 LPGGGQFYCIECARYFIDAKALKTHFKT 79 (129)
T ss_pred CCCCceeehhhhhhhhcchHHHHHHHhc
Confidence 4555569999999999999999999876
No 208
>PRK00564 hypA hydrogenase nickel incorporation protein; Provisional
Probab=24.32 E-value=33 Score=29.17 Aligned_cols=9 Identities=33% Similarity=0.918 Sum_probs=4.6
Q ss_pred cCcCCCccc
Q 017258 14 CYYCDREFD 22 (374)
Q Consensus 14 C~~CgK~Fs 22 (374)
|..||+.|.
T Consensus 74 C~~Cg~~~~ 82 (117)
T PRK00564 74 CKDCSHVFK 82 (117)
T ss_pred hhhCCCccc
Confidence 555554443
No 209
>PF07535 zf-DBF: DBF zinc finger; InterPro: IPR006572 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. In eukaryotes, initiation of DNA replication requires the assembly of pre-replication complexes (pre-RCs) on chromatin during the G1 phase. In the S phase, pre-RCs are activated by two protein kinases, Cdk2 and Cdc7, which results in the loading of replication factors and the unwinding of replication origins by the MCM helicase complex []. Cdc7 is a serine/threonine kinase that is conserved from yeast to human. It is regulated by its association with a regulatory subunit, the Dbf4 protein. This complex is often referred to as DDK (Dbf4-dependent kinase) []. DBF4 contains an N-terminal BRCT domain and a C-terminal conserved region that could potentially coordinate one zinc atom, the DBF4-type zinc finger. This entry represents the zinc finger, which is important for the interaction with Cdc7 [, ]. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding
Probab=24.30 E-value=32 Score=24.99 Aligned_cols=18 Identities=28% Similarity=0.630 Sum_probs=14.2
Q ss_pred cccCcCCCcccChHHHHHHhh
Q 017258 12 VWCYYCDREFDDEKILVQHQK 32 (374)
Q Consensus 12 p~C~~CgK~Fs~~s~Lk~H~R 32 (374)
-||+.|...|. +|..|+.
T Consensus 6 GYCE~C~~ky~---~l~~Hi~ 23 (49)
T PF07535_consen 6 GYCENCRVKYD---DLEEHIQ 23 (49)
T ss_pred ccCccccchhh---hHHHHhC
Confidence 47999998885 5778877
No 210
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=24.12 E-value=19 Score=33.80 Aligned_cols=55 Identities=11% Similarity=0.097 Sum_probs=29.4
Q ss_pred cCccccccCccccCCchhhHHHHhhhccCccccCCCC--CCCCCcccccccCCC----CCCHHHHHHHH
Q 017258 33 AKHFKCHVCHKKLSTAGGMAIHVLQVHKENVTKVPNA--KPGRESTDIEIYGMQ----GIPPDVLAAHY 95 (374)
Q Consensus 33 eKPfkC~~CgK~Fs~~s~L~rH~r~hH~ekp~~cp~~--kpgr~~~~C~iCgK~----F~~~s~L~~H~ 95 (374)
.-||.|.+|.+.|...-.- .. -|+ -|..| ...++.-+|-+||+. |.-.++|.+.+
T Consensus 194 ~IPF~C~iCKkdy~spvvt--~C-GH~-----FC~~Cai~~y~kg~~C~~Cgk~t~G~f~V~~d~~kmL 254 (259)
T COG5152 194 KIPFLCGICKKDYESPVVT--EC-GHS-----FCSLCAIRKYQKGDECGVCGKATYGRFWVVSDLQKML 254 (259)
T ss_pred CCceeehhchhhccchhhh--hc-chh-----HHHHHHHHHhccCCcceecchhhccceeHHhhHHHHH
Confidence 3589999999988764210 00 111 12111 233445778899864 34445555443
No 211
>PRK00432 30S ribosomal protein S27ae; Validated
Probab=23.66 E-value=41 Score=24.43 Aligned_cols=12 Identities=17% Similarity=0.528 Sum_probs=7.4
Q ss_pred CccccccCcccc
Q 017258 34 KHFKCHVCHKKL 45 (374)
Q Consensus 34 KPfkC~~CgK~F 45 (374)
..|.|..|+.++
T Consensus 36 ~r~~C~~Cgyt~ 47 (50)
T PRK00432 36 DRWHCGKCGYTE 47 (50)
T ss_pred CcEECCCcCCEE
Confidence 456677776554
No 212
>PF09416 UPF1_Zn_bind: RNA helicase (UPF2 interacting domain); InterPro: IPR018999 UPF1 (or regulator of nonsense transcripts 1 homologue) is an essential RNA helicase that detects mRNAs containing premature stop codons and triggers their degradation. This domain contains 3 zinc binding motifs and forms interactions with another protein (UPF2) that is also involved nonsense-mediated mRNA decay (NMD) []. ; GO: 0003677 DNA binding, 0004386 helicase activity, 0005524 ATP binding, 0008270 zinc ion binding, 0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay, 0005737 cytoplasm; PDB: 2IYK_B 2WJY_A 2WJV_A 2XZL_A.
Probab=23.27 E-value=45 Score=29.99 Aligned_cols=19 Identities=26% Similarity=0.550 Sum_probs=12.0
Q ss_pred cCcCCCccc------ChHHHHHHhh
Q 017258 14 CYYCDREFD------DEKILVQHQK 32 (374)
Q Consensus 14 C~~CgK~Fs------~~s~Lk~H~R 32 (374)
|..|+|.|. ..+|+..|+.
T Consensus 17 C~~c~kWFCNg~~~~s~SHIv~HLv 41 (152)
T PF09416_consen 17 CNTCNKWFCNGRGNTSGSHIVNHLV 41 (152)
T ss_dssp ETTTTEEEES--TTSSS-HHHHHHH
T ss_pred cCCCCcEeecCCCCCcccHHHHHHH
Confidence 777777775 4567777755
No 213
>smart00132 LIM Zinc-binding domain present in Lin-11, Isl-1, Mec-3. Zinc-binding domain family. Some LIM domains bind protein partners via tyrosine-containing motifs. LIM domains are found in many key regulators of developmental pathways.
Probab=23.25 E-value=31 Score=22.05 Aligned_cols=10 Identities=10% Similarity=-0.150 Sum_probs=6.4
Q ss_pred ccccccCCCC
Q 017258 76 TDIEIYGMQG 85 (374)
Q Consensus 76 ~~C~iCgK~F 85 (374)
|.|..|++.+
T Consensus 28 f~C~~C~~~L 37 (39)
T smart00132 28 FKCSKCGKPL 37 (39)
T ss_pred CCCcccCCcC
Confidence 6667776654
No 214
>KOG2071 consensus mRNA cleavage and polyadenylation factor I/II complex, subunit Pcf11 [RNA processing and modification]
Probab=23.25 E-value=45 Score=35.99 Aligned_cols=26 Identities=12% Similarity=0.231 Sum_probs=21.0
Q ss_pred cCccccccCccccCCchhhHHHHhhh
Q 017258 33 AKHFKCHVCHKKLSTAGGMAIHVLQV 58 (374)
Q Consensus 33 eKPfkC~~CgK~Fs~~s~L~rH~r~h 58 (374)
.++-+|..||++|.+.....+|+-.|
T Consensus 416 ~~pnqC~~CG~R~~~~ee~sk~md~H 441 (579)
T KOG2071|consen 416 DSPNQCKSCGLRFDDSEERSKHMDIH 441 (579)
T ss_pred CCcchhcccccccccchhhhhHhhhh
Confidence 67889999999999988777766444
No 215
>PRK03681 hypA hydrogenase nickel incorporation protein; Validated
Probab=23.22 E-value=39 Score=28.56 Aligned_cols=9 Identities=33% Similarity=1.199 Sum_probs=4.5
Q ss_pred ccCcCCCcc
Q 017258 13 WCYYCDREF 21 (374)
Q Consensus 13 ~C~~CgK~F 21 (374)
+|..|+..|
T Consensus 72 ~C~~Cg~~~ 80 (114)
T PRK03681 72 WCETCQQYV 80 (114)
T ss_pred EcccCCCee
Confidence 355555444
No 216
>PHA03247 large tegument protein UL36; Provisional
Probab=23.04 E-value=1.8e+03 Score=29.07 Aligned_cols=7 Identities=0% Similarity=-0.116 Sum_probs=2.8
Q ss_pred CccccCC
Q 017258 41 CHKKLST 47 (374)
Q Consensus 41 CgK~Fs~ 47 (374)
|+..|-.
T Consensus 2470 ~~~~y~~ 2476 (3151)
T PHA03247 2470 LGELFPG 2476 (3151)
T ss_pred ccccCCC
Confidence 4444433
No 217
>PF00301 Rubredoxin: Rubredoxin; InterPro: IPR004039 Rubredoxin is a low molecular weight iron-containing bacterial protein involved in electron transfer [, ], sometimes replacing ferredoxin as an electron carrier []. The 3-D structures of a number of rubredoxins have been solved [, ]. The fold belongs to the alpha+beta class, with 2 alpha-helices and 2-3 beta-strands. Its active site contains an iron ion which is co-ordinated by the sulphurs of four conserved cysteine residues forming an almost regular tetrahedron. The conserved cysteines reside on two loops, which are the most conserved regions of the protein. In addition, a ring of acidic residues in the proximity of the [Fe(Cys)4] centre is also well-conserved []. ; GO: 0009055 electron carrier activity, 0046872 metal ion binding; PDB: 2RDV_C 1RDV_A 1S24_A 1T9O_B 1B2J_A 1SMW_A 2PVE_B 1BFY_A 1T9P_C 1C09_C ....
Probab=22.98 E-value=21 Score=25.67 Aligned_cols=13 Identities=23% Similarity=0.700 Sum_probs=7.2
Q ss_pred cccccCccccCCc
Q 017258 36 FKCHVCHKKLSTA 48 (374)
Q Consensus 36 fkC~~CgK~Fs~~ 48 (374)
|+|.+|+..+.-.
T Consensus 2 y~C~~CgyvYd~~ 14 (47)
T PF00301_consen 2 YQCPVCGYVYDPE 14 (47)
T ss_dssp EEETTTSBEEETT
T ss_pred cCCCCCCEEEcCC
Confidence 5566666555443
No 218
>KOG3816 consensus Cell differentiation regulator of the Headcase family [Signal transduction mechanisms]
Probab=22.66 E-value=43 Score=34.55 Aligned_cols=20 Identities=25% Similarity=0.612 Sum_probs=10.9
Q ss_pred ccccccCccccCCchhhHHH
Q 017258 35 HFKCHVCHKKLSTAGGMAIH 54 (374)
Q Consensus 35 PfkC~~CgK~Fs~~s~L~rH 54 (374)
.|+|..|+|.....+.+...
T Consensus 474 R~~C~~C~k~l~~~~q~~t~ 493 (526)
T KOG3816|consen 474 RLVCQSCRKSLGVRDQLATQ 493 (526)
T ss_pred hhhhhhhccccccHHHHHHH
Confidence 45666666665555544433
No 219
>PRK11823 DNA repair protein RadA; Provisional
Probab=22.27 E-value=57 Score=34.04 Aligned_cols=22 Identities=23% Similarity=0.371 Sum_probs=14.8
Q ss_pred cccCcCCCcccChHHHHHHhhcCccccccCcc
Q 017258 12 VWCYYCDREFDDEKILVQHQKAKHFKCHVCHK 43 (374)
Q Consensus 12 p~C~~CgK~Fs~~s~Lk~H~ReKPfkC~~CgK 43 (374)
|.|..||..+. ..-.+|..|+.
T Consensus 8 y~C~~Cg~~~~----------~~~g~Cp~C~~ 29 (446)
T PRK11823 8 YVCQECGAESP----------KWLGRCPECGA 29 (446)
T ss_pred EECCcCCCCCc----------ccCeeCcCCCC
Confidence 44999996553 23457888864
No 220
>KOG2636 consensus Splicing factor 3a, subunit 3 [RNA processing and modification]
Probab=22.26 E-value=62 Score=33.94 Aligned_cols=35 Identities=14% Similarity=0.369 Sum_probs=24.8
Q ss_pred cCccccccCc-cccCCchhhHHHH---hhhccCccccCC
Q 017258 33 AKHFKCHVCH-KKLSTAGGMAIHV---LQVHKENVTKVP 67 (374)
Q Consensus 33 eKPfkC~~Cg-K~Fs~~s~L~rH~---r~hH~ekp~~cp 67 (374)
.+-|.|.+|| +++.-+..+.||- |..||-+.++.+
T Consensus 399 ~~ey~CEICGNy~Y~GrkaF~RHF~EwRH~hGmrCLGIp 437 (497)
T KOG2636|consen 399 DIEYNCEICGNYVYKGRKAFDRHFNEWRHAHGMRCLGIP 437 (497)
T ss_pred CcccceeeccCccccCcHHHHHHhHHHHHhhcceecCCC
Confidence 7889999999 7888888888886 333454444443
No 221
>COG3364 Zn-ribbon containing protein [General function prediction only]
Probab=21.76 E-value=52 Score=27.69 Aligned_cols=10 Identities=50% Similarity=1.142 Sum_probs=6.3
Q ss_pred cCcCCCcccC
Q 017258 14 CYYCDREFDD 23 (374)
Q Consensus 14 C~~CgK~Fs~ 23 (374)
|.-||+.|.+
T Consensus 5 CtrCG~vf~~ 14 (112)
T COG3364 5 CTRCGEVFDD 14 (112)
T ss_pred eccccccccc
Confidence 6666666665
No 222
>smart00154 ZnF_AN1 AN1-like Zinc finger. Zinc finger at the C-terminus of An1, a ubiquitin-like protein in Xenopus laevis.
Probab=21.44 E-value=40 Score=23.09 Aligned_cols=15 Identities=27% Similarity=0.607 Sum_probs=12.6
Q ss_pred ccccccCccccCCch
Q 017258 35 HFKCHVCHKKLSTAG 49 (374)
Q Consensus 35 PfkC~~CgK~Fs~~s 49 (374)
+|+|..|++.|....
T Consensus 12 ~f~C~~C~~~FC~~H 26 (39)
T smart00154 12 GFKCRHCGNLFCGEH 26 (39)
T ss_pred CeECCccCCcccccc
Confidence 889999999998753
No 223
>cd00730 rubredoxin Rubredoxin; nonheme iron binding domains containing a [Fe(SCys)4] center. Rubredoxins are small nonheme iron proteins. The iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc. They are believed to be involved in electron transfer.
Probab=21.30 E-value=33 Score=24.95 Aligned_cols=12 Identities=17% Similarity=0.777 Sum_probs=7.1
Q ss_pred cccccCccccCC
Q 017258 36 FKCHVCHKKLST 47 (374)
Q Consensus 36 fkC~~CgK~Fs~ 47 (374)
|+|..||..+.-
T Consensus 2 y~C~~CgyiYd~ 13 (50)
T cd00730 2 YECRICGYIYDP 13 (50)
T ss_pred cCCCCCCeEECC
Confidence 566666665554
No 224
>smart00834 CxxC_CXXC_SSSS Putative regulatory protein. CxxC_CXXC_SSSS represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=21.28 E-value=36 Score=22.67 Aligned_cols=16 Identities=13% Similarity=0.561 Sum_probs=12.3
Q ss_pred ccccccCccccCCchh
Q 017258 35 HFKCHVCHKKLSTAGG 50 (374)
Q Consensus 35 PfkC~~CgK~Fs~~s~ 50 (374)
.|+|..||+.|.....
T Consensus 5 ~y~C~~Cg~~fe~~~~ 20 (41)
T smart00834 5 EYRCEDCGHTFEVLQK 20 (41)
T ss_pred EEEcCCCCCEEEEEEe
Confidence 4889999998875443
No 225
>PF04780 DUF629: Protein of unknown function (DUF629); InterPro: IPR006865 This domain represents a region of several plant proteins of unknown function. A C2H2 zinc finger is predicted in this region in some family members, but the spacing between the cysteine residues is not conserved throughout the family.
Probab=21.20 E-value=51 Score=34.78 Aligned_cols=27 Identities=33% Similarity=0.511 Sum_probs=22.1
Q ss_pred cccccCccccCCchhhHHHHhhhccCc
Q 017258 36 FKCHVCHKKLSTAGGMAIHVLQVHKEN 62 (374)
Q Consensus 36 fkC~~CgK~Fs~~s~L~rH~r~hH~ek 62 (374)
+.|..|.+.|.....++.|+...|-.+
T Consensus 58 WiCp~CskkF~d~~~~~~H~~~eH~~~ 84 (466)
T PF04780_consen 58 WICPRCSKKFSDAESCLSHMEQEHPAG 84 (466)
T ss_pred eeCCcccceeCCHHHHHHHHHHhhhhh
Confidence 468889999999999999998777553
No 226
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=21.18 E-value=2.6e+02 Score=28.02 Aligned_cols=8 Identities=13% Similarity=0.538 Sum_probs=4.5
Q ss_pred CccccCCc
Q 017258 41 CHKKLSTA 48 (374)
Q Consensus 41 CgK~Fs~~ 48 (374)
|++.|+..
T Consensus 293 C~~~fc~e 300 (427)
T COG5222 293 CGHTFCDE 300 (427)
T ss_pred ccchHHHH
Confidence 66666543
No 227
>cd01410 SIRT7 SIRT7: Eukaryotic and prokaryotic group (class4) which includes human sirtuin SIRT6, SIRT7, and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span.
Probab=21.00 E-value=94 Score=28.87 Aligned_cols=10 Identities=30% Similarity=0.790 Sum_probs=5.0
Q ss_pred cCcCCCcccC
Q 017258 14 CYYCDREFDD 23 (374)
Q Consensus 14 C~~CgK~Fs~ 23 (374)
|..|++.|..
T Consensus 98 C~~C~~~~~~ 107 (206)
T cd01410 98 CKSCGPEYVR 107 (206)
T ss_pred CCCCCCccch
Confidence 5555554443
No 228
>TIGR00244 transcriptional regulator NrdR. Members of this almost entirely bacterial family contain an ATP cone domain (PFAM:PF03477). There is never more than one member per genome. Common gene symbols given include nrdR, ybaD, ribX and ytcG. The member from Streptomyces coelicolor is found upstream in the operon of the class II oxygen-independent ribonucleotide reductase gene nrdJ and was shown to repress nrdJ expression. Many members of this family are found near genes for riboflavin biosynthesis in Gram-negative bacteria, suggesting a role in that pathway. However, a phylogenetic profiling study associates members of this family with the presence of a palindromic signal with consensus acaCwAtATaTwGtgt, termed the NrdR-box, an upstream element for most operons for ribonucleotide reductase of all three classes in bacterial genomes.
Probab=20.82 E-value=47 Score=29.65 Aligned_cols=19 Identities=5% Similarity=-0.258 Sum_probs=14.2
Q ss_pred CCCcccccccCCCCCCHHH
Q 017258 72 GRESTDIEIYGMQGIPPDV 90 (374)
Q Consensus 72 gr~~~~C~iCgK~F~~~s~ 90 (374)
-|+.-+|..||++|++-+.
T Consensus 25 IRRRReC~~C~~RFTTyEr 43 (147)
T TIGR00244 25 IRRRRECLECHERFTTFER 43 (147)
T ss_pred eeecccCCccCCccceeee
Confidence 3455789999999976543
No 229
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=20.72 E-value=51 Score=34.45 Aligned_cols=28 Identities=32% Similarity=0.425 Sum_probs=16.6
Q ss_pred CCCCCCCCCCccccCcCCCcccChHHHHHHhhcCccccccCc
Q 017258 1 MGKKKKRVSSKVWCYYCDREFDDEKILVQHQKAKHFKCHVCH 42 (374)
Q Consensus 1 mgkKk~~~gEKp~C~~CgK~Fs~~s~Lk~H~ReKPfkC~~Cg 42 (374)
|-|||.. |.|+.||..+..=. =+|..|+
T Consensus 1 MaK~~t~----f~C~~CG~~s~KW~----------GkCp~Cg 28 (456)
T COG1066 1 MAKKKTA----FVCQECGYVSPKWL----------GKCPACG 28 (456)
T ss_pred CCCcccE----EEcccCCCCCcccc----------ccCCCCC
Confidence 4555522 44999996654211 2688887
No 230
>PF04780 DUF629: Protein of unknown function (DUF629); InterPro: IPR006865 This domain represents a region of several plant proteins of unknown function. A C2H2 zinc finger is predicted in this region in some family members, but the spacing between the cysteine residues is not conserved throughout the family.
Probab=20.51 E-value=59 Score=34.34 Aligned_cols=22 Identities=27% Similarity=0.875 Sum_probs=19.9
Q ss_pred ccc-cCcCCCcccChHHHHHHhh
Q 017258 11 KVW-CYYCDREFDDEKILVQHQK 32 (374)
Q Consensus 11 Kp~-C~~CgK~Fs~~s~Lk~H~R 32 (374)
++| |..|.+.|.....+..|+.
T Consensus 56 rFWiCp~CskkF~d~~~~~~H~~ 78 (466)
T PF04780_consen 56 RFWICPRCSKKFSDAESCLSHME 78 (466)
T ss_pred eEeeCCcccceeCCHHHHHHHHH
Confidence 466 9999999999999999987
No 231
>PRK05654 acetyl-CoA carboxylase subunit beta; Validated
Probab=20.13 E-value=1.3e+02 Score=29.85 Aligned_cols=32 Identities=19% Similarity=0.420 Sum_probs=21.1
Q ss_pred cCcCCCcccChHHHHHHhhcCccccccCccccCCchh
Q 017258 14 CYYCDREFDDEKILVQHQKAKHFKCHVCHKKLSTAGG 50 (374)
Q Consensus 14 C~~CgK~Fs~~s~Lk~H~ReKPfkC~~CgK~Fs~~s~ 50 (374)
|..|++.+-.+. |. +.-+.|..|++-|.-...
T Consensus 30 c~~c~~~~~~~~-l~----~~~~vc~~c~~h~rl~ar 61 (292)
T PRK05654 30 CPSCGQVLYRKE-LE----ANLNVCPKCGHHMRISAR 61 (292)
T ss_pred CCCccchhhHHH-HH----hcCCCCCCCCCCeeCCHH
Confidence 999997654332 22 234689999998865443
No 232
>KOG1044 consensus Actin-binding LIM Zn-finger protein Limatin involved in axon guidance [Signal transduction mechanisms; Cytoskeleton]
Probab=20.10 E-value=27 Score=37.59 Aligned_cols=39 Identities=23% Similarity=0.606 Sum_probs=24.4
Q ss_pred cccCcCCCcccChHHHHHHhh---cCccccccCccccCCchhh
Q 017258 12 VWCYYCDREFDDEKILVQHQK---AKHFKCHVCHKKLSTAGGM 51 (374)
Q Consensus 12 p~C~~CgK~Fs~~s~Lk~H~R---eKPfkC~~CgK~Fs~~s~L 51 (374)
.+|..|++...-. .|+.+-+ .+-|.|.+|++.+..-..+
T Consensus 17 i~c~~c~~kc~ge-vlrv~d~~fhi~cf~c~~cg~~la~~gff 58 (670)
T KOG1044|consen 17 IKCDKCRKKCSGE-VLRVNDNHFHINCFQCKKCGRNLAEGGFF 58 (670)
T ss_pred eehhhhCCccccc-eeEeeccccceeeeeccccCCCcccccce
Confidence 3488888776532 2333322 6678999999876554443
No 233
>KOG3799 consensus Rab3 effector RIM1 and related proteins, contain Rab3a binding domain [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.03 E-value=24 Score=31.10 Aligned_cols=31 Identities=19% Similarity=0.597 Sum_probs=18.5
Q ss_pred CCccccCcCCCc-ccChHHHHHHhhcCccccccCccccCCc
Q 017258 9 SSKVWCYYCDRE-FDDEKILVQHQKAKHFKCHVCHKKLSTA 48 (374)
Q Consensus 9 gEKp~C~~CgK~-Fs~~s~Lk~H~ReKPfkC~~CgK~Fs~~ 48 (374)
+.-..|.+|.|+ |.+ .--++|.+|.-+|+-+
T Consensus 63 ~ddatC~IC~KTKFAD---------G~GH~C~YCq~r~CAR 94 (169)
T KOG3799|consen 63 GDDATCGICHKTKFAD---------GCGHNCSYCQTRFCAR 94 (169)
T ss_pred CcCcchhhhhhccccc---------ccCcccchhhhhHHHh
Confidence 444558888765 332 3356777776666544
Done!