BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017259
(374 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2BYJ|A Chain A, Ornithine Aminotransferase Mutant Y85i
pdb|2BYJ|B Chain B, Ornithine Aminotransferase Mutant Y85i
pdb|2BYJ|C Chain C, Ornithine Aminotransferase Mutant Y85i
Length = 439
Score = 348 bits (892), Expect = 3e-96, Method: Compositional matrix adjust.
Identities = 175/345 (50%), Positives = 236/345 (68%), Gaps = 6/345 (1%)
Query: 1 MKALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWG 60
+ AL+ Q +KLTL+SRAFYN+ + E +T +F Y VLPMNTG E ETA KLARKWG
Sbjct: 98 VNALKSQVDKLTLTSRAFYNNVLGEYEEYITKLFNYHKVLPMNTGVEAGETACKLARKWG 157
Query: 61 YVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEK 120
Y K +A IV G F GRTL+AIS S D + GFGP +PG + + D+ ALE+
Sbjct: 158 YTVKGIQKYKAKIVFAAGNFWGRTLSAISSSTDPTSYDGFGPFMPGFDIIPYNDLPALER 217
Query: 121 IFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRM 180
++ +A F+ EPIQGEAGV++P GYL VR+LC+++ +L IADEIQ+GLAR+GR
Sbjct: 218 ALQDP--NVAAFMVEPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTGLARTGRW 275
Query: 181 LASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIA 240
LA D+E VRPD+V+LGKAL GG+ PVSAVL D ++ML I+PGEHGST+GGNPL VAIA
Sbjct: 276 LAVDYENVRPDIVLLGKALSGGLYPVSAVLCDDDIMLTIKPGEHGSTYGGNPLGCRVAIA 335
Query: 241 SLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAY 300
+L+V+ +E LAE + LG LR L K+ + V VRG+GL NA+ +T A+
Sbjct: 336 ALEVLEEENLAENADKLGIILRNELMKLPS---DVVTAVRGKGLLNAIVIKETK-DWDAW 391
Query: 301 DICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVL 345
+CL++++ G+LAKPTH I+R PPL I +EL+E + ++ +
Sbjct: 392 KVCLRLRDNGLLAKPTHGDIIRFAPPLVIKEDELRESIEIINKTI 436
>pdb|1OAT|A Chain A, Ornithine Aminotransferase
pdb|1OAT|B Chain B, Ornithine Aminotransferase
pdb|1OAT|C Chain C, Ornithine Aminotransferase
pdb|2OAT|A Chain A, Ornithine Aminotransferase Complexed With
5-Fluoromethylornithine
pdb|2OAT|B Chain B, Ornithine Aminotransferase Complexed With
5-Fluoromethylornithine
pdb|2OAT|C Chain C, Ornithine Aminotransferase Complexed With
5-Fluoromethylornithine
Length = 439
Score = 348 bits (892), Expect = 3e-96, Method: Compositional matrix adjust.
Identities = 175/345 (50%), Positives = 236/345 (68%), Gaps = 6/345 (1%)
Query: 1 MKALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWG 60
+ AL+ Q +KLTL+SRAFYN+ + E +T +F Y VLPMNTG E ETA KLARKWG
Sbjct: 98 VNALKSQVDKLTLTSRAFYNNVLGEYEEYITKLFNYHKVLPMNTGVEAGETACKLARKWG 157
Query: 61 YVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEK 120
Y K +A IV G F GRTL+AIS S D + GFGP +PG + + D+ ALE+
Sbjct: 158 YTVKGIQKYKAKIVFAAGNFWGRTLSAISSSTDPTSYDGFGPFMPGFDIIPYNDLPALER 217
Query: 121 IFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRM 180
++ +A F+ EPIQGEAGV++P GYL VR+LC+++ +L IADEIQ+GLAR+GR
Sbjct: 218 ALQDP--NVAAFMVEPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTGLARTGRW 275
Query: 181 LASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIA 240
LA D+E VRPD+V+LGKAL GG+ PVSAVL D ++ML I+PGEHGST+GGNPL VAIA
Sbjct: 276 LAVDYENVRPDIVLLGKALSGGLYPVSAVLCDDDIMLTIKPGEHGSTYGGNPLGCRVAIA 335
Query: 241 SLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAY 300
+L+V+ +E LAE + LG LR L K+ + V VRG+GL NA+ +T A+
Sbjct: 336 ALEVLEEENLAENADKLGIILRNELMKLPS---DVVTAVRGKGLLNAIVIKETK-DWDAW 391
Query: 301 DICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVL 345
+CL++++ G+LAKPTH I+R PPL I +EL+E + ++ +
Sbjct: 392 KVCLRLRDNGLLAKPTHGDIIRFAPPLVIKEDELRESIEIINKTI 436
>pdb|2CAN|A Chain A, Human Ornithine Aminotransferase Complexed With L-Canaline
pdb|2CAN|B Chain B, Human Ornithine Aminotransferase Complexed With L-Canaline
pdb|2CAN|C Chain C, Human Ornithine Aminotransferase Complexed With L-Canaline
pdb|1GBN|A Chain A, Human Ornithine Aminotransferase Complexed With The
Neurotoxin Gabaculine
pdb|1GBN|B Chain B, Human Ornithine Aminotransferase Complexed With The
Neurotoxin Gabaculine
pdb|1GBN|C Chain C, Human Ornithine Aminotransferase Complexed With The
Neurotoxin Gabaculine
Length = 402
Score = 347 bits (891), Expect = 5e-96, Method: Compositional matrix adjust.
Identities = 175/345 (50%), Positives = 236/345 (68%), Gaps = 6/345 (1%)
Query: 1 MKALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWG 60
+ AL+ Q +KLTL+SRAFYN+ + E +T +F Y VLPMNTG E ETA KLARKWG
Sbjct: 61 VNALKSQVDKLTLTSRAFYNNVLGEYEEYITKLFNYHKVLPMNTGVEAGETACKLARKWG 120
Query: 61 YVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEK 120
Y K +A IV G F GRTL+AIS S D + GFGP +PG + + D+ ALE+
Sbjct: 121 YTVKGIQKYKAKIVFAAGNFWGRTLSAISSSTDPTSYDGFGPFMPGFDIIPYNDLPALER 180
Query: 121 IFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRM 180
++ +A F+ EPIQGEAGV++P GYL VR+LC+++ +L IADEIQ+GLAR+GR
Sbjct: 181 ALQDP--NVAAFMVEPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTGLARTGRW 238
Query: 181 LASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIA 240
LA D+E VRPD+V+LGKAL GG+ PVSAVL D ++ML I+PGEHGST+GGNPL VAIA
Sbjct: 239 LAVDYENVRPDIVLLGKALSGGLYPVSAVLCDDDIMLTIKPGEHGSTYGGNPLGCRVAIA 298
Query: 241 SLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAY 300
+L+V+ +E LAE + LG LR L K+ + V VRG+GL NA+ +T A+
Sbjct: 299 ALEVLEEENLAENADKLGIILRNELMKLPS---DVVTAVRGKGLLNAIVIKETK-DWDAW 354
Query: 301 DICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVL 345
+CL++++ G+LAKPTH I+R PPL I +EL+E + ++ +
Sbjct: 355 KVCLRLRDNGLLAKPTHGDIIRFAPPLVIKEDELRESIEIINKTI 399
>pdb|2BYL|A Chain A, Structure Of Ornithine Aminotransferase Triple Mutant Y85i
Y55a G320f
pdb|2BYL|B Chain B, Structure Of Ornithine Aminotransferase Triple Mutant Y85i
Y55a G320f
pdb|2BYL|C Chain C, Structure Of Ornithine Aminotransferase Triple Mutant Y85i
Y55a G320f
Length = 439
Score = 345 bits (884), Expect = 3e-95, Method: Compositional matrix adjust.
Identities = 174/345 (50%), Positives = 235/345 (68%), Gaps = 6/345 (1%)
Query: 1 MKALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWG 60
+ AL+ Q +KLTL+SRAFYN+ + E +T +F Y VLPMNTG E ETA KLARKWG
Sbjct: 98 VNALKSQVDKLTLTSRAFYNNVLGEYEEYITKLFNYHKVLPMNTGVEAGETACKLARKWG 157
Query: 61 YVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEK 120
Y K +A IV G F GRTL+AIS S D + GFGP +PG + + D+ ALE+
Sbjct: 158 YTVKGIQKYKAKIVFAAGNFWGRTLSAISSSTDPTSYDGFGPFMPGFDIIPYNDLPALER 217
Query: 121 IFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRM 180
++ +A F+ EPIQGEAGV++P GYL VR+LC+++ +L IADEIQ+GLAR+GR
Sbjct: 218 ALQDP--NVAAFMVEPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTGLARTGRW 275
Query: 181 LASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIA 240
LA D+E VRPD+V+LGKAL GG+ PVSAVL D ++ML I+PGEH ST+GGNPL VAIA
Sbjct: 276 LAVDYENVRPDIVLLGKALSGGLYPVSAVLCDDDIMLTIKPGEHFSTYGGNPLGCRVAIA 335
Query: 241 SLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAY 300
+L+V+ +E LAE + LG LR L K+ + V VRG+GL NA+ +T A+
Sbjct: 336 ALEVLEEENLAENADKLGIILRNELMKLPS---DVVTAVRGKGLLNAIVIKETK-DWDAW 391
Query: 301 DICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVL 345
+CL++++ G+LAKPTH I+R PPL I +EL+E + ++ +
Sbjct: 392 KVCLRLRDNGLLAKPTHGDIIRFAPPLVIKEDELRESIEIINKTI 436
>pdb|3LG0|A Chain A, Structure Of Plasmodium Falciparum Ornithine
Delta-Aminotransferase
pdb|3LG0|B Chain B, Structure Of Plasmodium Falciparum Ornithine
Delta-Aminotransferase
pdb|3LG0|C Chain C, Structure Of Plasmodium Falciparum Ornithine
Delta-Aminotransferase
pdb|3LG0|D Chain D, Structure Of Plasmodium Falciparum Ornithine
Delta-Aminotransferase
pdb|3NTJ|A Chain A, Redox Regulation Of Plasmodium Falciparum Ornithine Delta-
Aminotransferase
pdb|3NTJ|B Chain B, Redox Regulation Of Plasmodium Falciparum Ornithine Delta-
Aminotransferase
pdb|3NTJ|C Chain C, Redox Regulation Of Plasmodium Falciparum Ornithine Delta-
Aminotransferase
pdb|3NTJ|D Chain D, Redox Regulation Of Plasmodium Falciparum Ornithine Delta-
Aminotransferase
Length = 422
Score = 333 bits (854), Expect = 9e-92, Method: Compositional matrix adjust.
Identities = 165/341 (48%), Positives = 227/341 (66%), Gaps = 5/341 (1%)
Query: 1 MKALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWG 60
+ A+ QA+KLT+ SRAF++D V LT++FGYD VL MNTGAE ETA KL RKWG
Sbjct: 68 LNAMINQAKKLTICSRAFFSDSLGVCERYLTNLFGYDKVLMMNTGAEASETAYKLCRKWG 127
Query: 61 YVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEK 120
Y KK + A I+ C F GRTL +S S D + FGP +P LKV + D+ ALEK
Sbjct: 128 YEVKKIPENSAKIIVCNNNFSGRTLGCVSASTDKKCKNNFGPFVPNFLKVPYDDLEALEK 187
Query: 121 IFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRM 180
++ + F+ EP+QGEAGVI+P D Y V LC KYN+L +ADE+Q+GL R+G++
Sbjct: 188 ELQDP--NVCAFIVEPVQGEAGVIVPSDSYFPGVASLCKKYNVLFVADEVQTGLGRTGKL 245
Query: 181 LASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIA 240
L + V+PD+++LGKAL GG P+SA+LA+ +VML ++PGEHGST+GGNPLA+A+ +
Sbjct: 246 LCTHHYGVKPDVILLGKALSGGHYPISAILANDDVMLVLKPGEHGSTYGGNPLAAAICVE 305
Query: 241 SLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAY 300
+L V+ +EKL E + LG Q+L K Q + V+EVRG+GL A+EF V+ +
Sbjct: 306 ALKVLINEKLCENADKLGAPFLQNL-KEQLKDSKVVREVRGKGLLCAIEFKNDL--VNVW 362
Query: 301 DICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKAL 341
DICLK KE G++ + HD VRLTPPL I+ +L E ++ +
Sbjct: 363 DICLKFKENGLITRSVHDKTVRLTPPLCITKEQLDECTEII 403
>pdb|3RUY|A Chain A, Crystal Structure Of The Ornithine-Oxo Acid Transaminase
Rocd From Bacillus Anthracis
pdb|3RUY|B Chain B, Crystal Structure Of The Ornithine-Oxo Acid Transaminase
Rocd From Bacillus Anthracis
Length = 392
Score = 331 bits (848), Expect = 4e-91, Method: Compositional matrix adjust.
Identities = 163/345 (47%), Positives = 232/345 (67%), Gaps = 11/345 (3%)
Query: 1 MKALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWG 60
+ AL +QA ++TL+SRAF++D+ + E++ + +MVLPMNTGAE VETA+K AR+W
Sbjct: 58 INALIDQANRVTLTSRAFHSDQLGPWYEKVAKLTNKEMVLPMNTGAEAVETAIKTARRWA 117
Query: 61 YVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEK 120
Y KK + A I+ C FHGRT+ A+SMS + E RGFGP+LPG + + +GD+ AL+
Sbjct: 118 YDVKKVEANRAEIIVCEDNFHGRTMGAVSMSSNEEYKRGFGPMLPGIIVIPYGDLEALKA 177
Query: 121 IFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRM 180
+ A F+ EPIQGEAG+ IPP G+LK ++C K N+L +ADEIQ+GL R+G++
Sbjct: 178 AITPN---TAAFILEPIQGEAGINIPPAGFLKEALEVCKKENVLFVADEIQTGLGRTGKV 234
Query: 181 LASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIA 240
A DW+ V PDM ILG ALGGGV P+S A+++++ +PG HGSTFGGNPLA AV+IA
Sbjct: 235 FACDWDNVTPDMYILGXALGGGVFPISCAAANRDILGVFEPGSHGSTFGGNPLACAVSIA 294
Query: 241 SLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAY 300
+L+V+ +EKL ERS LGE+L L +I + EVRG+GLF +E ++ A P
Sbjct: 295 ALEVLEEEKLTERSLQLGEKLVGQLKEIDNPM---ITEVRGKGLFIGIELNEPARPY--- 348
Query: 301 DICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVL 345
C ++K G+L K TH+ ++R+ PPL IS +L+ + + VL
Sbjct: 349 --CEQLKAAGLLCKETHENVIRIAPPLVISEEDLEWAFQKIKAVL 391
>pdb|1Z7D|A Chain A, Ornithine Aminotransferase Py00104 From Plasmodium Yoelii
pdb|1Z7D|B Chain B, Ornithine Aminotransferase Py00104 From Plasmodium Yoelii
pdb|1Z7D|C Chain C, Ornithine Aminotransferase Py00104 From Plasmodium Yoelii
pdb|1Z7D|D Chain D, Ornithine Aminotransferase Py00104 From Plasmodium Yoelii
pdb|1Z7D|E Chain E, Ornithine Aminotransferase Py00104 From Plasmodium Yoelii
pdb|1Z7D|F Chain F, Ornithine Aminotransferase Py00104 From Plasmodium Yoelii
Length = 433
Score = 317 bits (813), Expect = 5e-87, Method: Compositional matrix adjust.
Identities = 161/341 (47%), Positives = 226/341 (66%), Gaps = 5/341 (1%)
Query: 1 MKALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWG 60
+ A+ QA+ LT+ SRAF++ + LT++ GYD VL MNTGAE ETA KL RKWG
Sbjct: 87 LNAMINQAKNLTICSRAFFSVPLGICERYLTNLLGYDKVLMMNTGAEANETAYKLCRKWG 146
Query: 61 YVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEK 120
Y KK + A IV C F GRTL IS S + FGP P KV + D+ ALE+
Sbjct: 147 YEVKKIPENMAKIVVCKNNFSGRTLGCISASTTKKCTSNFGPFAPQFSKVPYDDLEALEE 206
Query: 121 IFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRM 180
K+ + F+ EPIQGEAGVI+P D YL+ V D+C KYN+L +ADE+Q+GL R+G++
Sbjct: 207 ELKDP--NVCAFIVEPIQGEAGVIVPSDNYLQGVYDICKKYNVLFVADEVQTGLGRTGKL 264
Query: 181 LASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIA 240
L V+PD+++LGKAL GG P+SAVLA+ ++ML I+PGEHGST+GGNPLA+++ +
Sbjct: 265 LCVHHYNVKPDVILLGKALSGGHYPISAVLANDDIMLVIKPGEHGSTYGGNPLAASICVE 324
Query: 241 SLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAY 300
+L+V+ +EKL E + LG ++L K + + V++VRG+GL A+EF K L V+
Sbjct: 325 ALNVLINEKLCENAEKLGGPFLENL-KRELKDSKIVRDVRGKGLLCAIEF-KNEL-VNVL 381
Query: 301 DICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKAL 341
DICLK+KE G++ + HD +RLTPPL I+ +L E ++ +
Sbjct: 382 DICLKLKENGLITRDVHDKTIRLTPPLCITKEQLDECTEII 422
>pdb|2EH6|A Chain A, Crystal Structure Of Acetylornithine Aminotransferase From
Aquifex Aeolicus Vf5
pdb|2EH6|B Chain B, Crystal Structure Of Acetylornithine Aminotransferase From
Aquifex Aeolicus Vf5
Length = 375
Score = 183 bits (464), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 118/350 (33%), Positives = 179/350 (51%), Gaps = 31/350 (8%)
Query: 2 KALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGYD-MVLPMNTGAEGVETALKLARKWG 60
+AL+EQ EKL S + N A +L F + V N+G E VE A+KLARK+
Sbjct: 51 EALKEQVEKLLHVSNLYENPWQEELAHKLVKHFWTEGKVFFANSGTESVEAAIKLARKYW 110
Query: 61 YVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEK 120
K K ++ +S FHGRT ++S + + +GF PL+PG DI ++ K
Sbjct: 111 RDKGK---NKWKFISFENSFHGRTYGSLSATGQPKFHKGFEPLVPGFSYAKLNDIDSVYK 167
Query: 121 IFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRM 180
+ E + AG + E IQGE GV + +L ++++C + ++L+I DE+Q+G+ R+G
Sbjct: 168 LLDE---ETAGIIIEVIQGEGGVNEASEDFLSKLQEICKEKDVLLIIDEVQTGIGRTGEF 224
Query: 181 LASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIA 240
A ++PD++ L K LGGGV P+ A+LA +EV PG HGSTFGGNPLA
Sbjct: 225 YAYQHFNLKPDVIALAKGLGGGV-PIGAILAREEVAQSFTPGSHGSTFGGNPLACRAGTV 283
Query: 241 SLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKE-----VRGRGLFNAVEFDKTAL 295
+D + E+L H+ ++ F +KE V+GRGL +E ++
Sbjct: 284 VVDEV-------------EKLLPHVREVGNYFKEKLKELGKGKVKGRGLMLGLELER--- 327
Query: 296 PVSAYDICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVL 345
D LK E+G+L T ++R PPL I + L ++L
Sbjct: 328 --ECKDYVLKALEKGLLINCTAGKVLRFLPPLIIQKEHIDRAISVLREIL 375
>pdb|2PB0|A Chain A, Structure Of Biosynthetic N-Acetylornithine
Aminotransferase From Salmonella Typhimurium: Studies On
Substrate Specificity And Inhibitor Binding
pdb|2PB0|B Chain B, Structure Of Biosynthetic N-Acetylornithine
Aminotransferase From Salmonella Typhimurium: Studies On
Substrate Specificity And Inhibitor Binding
pdb|2PB2|A Chain A, Structure Of Biosynthetic N-Acetylornithine
Aminotransferase From Salmonella Typhimurium: Studies On
Substrate Specificity And Inhibitor Binding
pdb|2PB2|B Chain B, Structure Of Biosynthetic N-Acetylornithine
Aminotransferase From Salmonella Typhimurium: Studies On
Substrate Specificity And Inhibitor Binding
Length = 420
Score = 181 bits (460), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 115/337 (34%), Positives = 172/337 (51%), Gaps = 8/337 (2%)
Query: 1 MKALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWG 60
++AL+ Q E L +S F N+ +L + VL MN+G E ETA KLAR +
Sbjct: 79 VEALKSQGETLWHTSNVFTNEPALRLGRKLIDATFAERVLFMNSGTEANETAFKLARHYA 138
Query: 61 YVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEK 120
V+ S + I++ FHGR+L +S+ + GFGP + V F D+ A++
Sbjct: 139 CVRH--SPFKTKIIAFHNAFHGRSLFTVSVGGQPKYSDGFGPKPADIIHVPFNDLHAVKA 196
Query: 121 IFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRM 180
+ D + EPIQGE GV +LK +RDLC ++ L++ DE+Q G+ R+G +
Sbjct: 197 VMD---DHTCAVVVEPIQGEGGVQAATPEFLKGLRDLCDEHQALLVFDEVQCGMGRTGDL 253
Query: 181 LASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIA 240
A V PD++ KALGGG PVSA+L +E+ G HGST+GGNPLA AVA A
Sbjct: 254 FAYMHYGVTPDILTSAKALGGG-FPVSAMLTTQEIASAFHVGSHGSTYGGNPLACAVAGA 312
Query: 241 SLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAY 300
+ D+I ++ + ++ QHL I +QF + ++RG GL E K A
Sbjct: 313 AFDIINTPEVLQGIHTKRQQFVQHLQAIDEQF-DIFSDIRGMGLLIGAEL-KPKYKGRAR 370
Query: 301 DICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEG 337
D E G++ ++R P L + ++ EG
Sbjct: 371 DFLYAGAEAGVMVLNAGADVMRFAPSLVVEEADIHEG 407
>pdb|2E54|A Chain A, Crystal Structure Of Acetylornithine Aminotransferase From
Thermotoga Maritima
Length = 385
Score = 179 bits (453), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 116/346 (33%), Positives = 189/346 (54%), Gaps = 12/346 (3%)
Query: 1 MKALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWG 60
++A+++QAEKL S F+N AE L+ V NTG E E A+K+ARK+G
Sbjct: 50 VEAIKDQAEKLIHCSNLFWNRPQMELAELLSKNTFGGKVFFANTGTEANEAAIKIARKYG 109
Query: 61 YVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEK 120
K + I+S FHGRTL +++ + + + F PL+PG +F ++ L +
Sbjct: 110 KKKSEKKYR---ILSAHNSFHGRTLGSLTATGQPKYQKPFEPLVPGFEYFEFNNVEDLRR 166
Query: 121 IFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRM 180
K S D A FL EPIQGE+G++ +L+ R LC +Y+ L++ DE+Q G+ R+G++
Sbjct: 167 --KMSEDVCAVFL-EPIQGESGIVPATKEFLEEARKLCDEYDALLVFDEVQCGMGRTGKL 223
Query: 181 LASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIA 240
A V PD++ K LGGGV P+ AV+ ++ + ++PG+HG+TFGGNPLA +
Sbjct: 224 FAYQKYGVVPDVLTTAKGLGGGV-PIGAVIVNERANV-LEPGDHGTTFGGNPLACRAGVT 281
Query: 241 SLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAY 300
+ + E E G L + L ++++++ + V +VRG GL ++F + VS
Sbjct: 282 VIKELTKEGFLEEVEEKGNYLMKKLQEMKEEY-DVVADVRGMGLMIGIQFRE---EVSNR 337
Query: 301 DICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVLE 346
++ K E +L P + +R PPL++ E+ + L VL+
Sbjct: 338 EVATKCFENKLLVVPAGNNTIRFLPPLTVEYGEIDLAVETLKKVLQ 383
>pdb|2ORD|A Chain A, Crystal Structure Of Acetylornithine Aminotransferase (Ec
2.6.1.11) (Acoat) (Tm1785) From Thermotoga Maritima At
1.40 A Resolution
pdb|2ORD|B Chain B, Crystal Structure Of Acetylornithine Aminotransferase (Ec
2.6.1.11) (Acoat) (Tm1785) From Thermotoga Maritima At
1.40 A Resolution
Length = 397
Score = 177 bits (449), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 116/346 (33%), Positives = 187/346 (54%), Gaps = 12/346 (3%)
Query: 1 MKALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWG 60
++A+++QAEKL S F+N AE L+ V NTG E E A+K+ARK+G
Sbjct: 62 VEAIKDQAEKLIHCSNLFWNRPQXELAELLSKNTFGGKVFFANTGTEANEAAIKIARKYG 121
Query: 61 YVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEK 120
K + I+S FHGRTL +++ + + + F PL+PG +F ++ L +
Sbjct: 122 KKKSEKKYR---ILSAHNSFHGRTLGSLTATGQPKYQKPFEPLVPGFEYFEFNNVEDLRR 178
Query: 121 IFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRM 180
K S D A FL EPIQGE+G++ +L+ R LC +Y+ L++ DE+Q G R+G++
Sbjct: 179 --KXSEDVCAVFL-EPIQGESGIVPATKEFLEEARKLCDEYDALLVFDEVQCGXGRTGKL 235
Query: 181 LASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIA 240
A V PD++ K LGGGV P+ AV+ ++ + ++PG+HG+TFGGNPLA +
Sbjct: 236 FAYQKYGVVPDVLTTAKGLGGGV-PIGAVIVNERANV-LEPGDHGTTFGGNPLACRAGVT 293
Query: 241 SLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAY 300
+ + E E G L + L + ++++ + V +VRG GL ++F + VS
Sbjct: 294 VIKELTKEGFLEEVEEKGNYLXKKLQEXKEEY-DVVADVRGXGLXIGIQFREE---VSNR 349
Query: 301 DICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVLE 346
++ K E +L P + +R PPL++ E+ + L VL+
Sbjct: 350 EVATKCFENKLLVVPAGNNTIRFLPPLTVEYGEIDLAVETLKKVLQ 395
>pdb|3NX3|A Chain A, Crystal Structure Of Acetylornithine Aminotransferase
(Argd) From Campylobacter Jejuni
pdb|3NX3|B Chain B, Crystal Structure Of Acetylornithine Aminotransferase
(Argd) From Campylobacter Jejuni
Length = 395
Score = 171 bits (432), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 105/343 (30%), Positives = 176/343 (51%), Gaps = 10/343 (2%)
Query: 4 LQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVK 63
++ Q +KL +S +YN+ A+ L + V N+G E +E A K ARK+ + K
Sbjct: 61 IKAQVDKLLHTSNLYYNENIAAAAKNLAKASALERVFFTNSGTESIEGAXKTARKYAFNK 120
Query: 64 KKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFK 123
+ ++ FHGRTL A+S++ + + + F PL+ G + DI+++EK+
Sbjct: 121 ---GVKGGQFIAFKHSFHGRTLGALSLTANEKYQKPFKPLISGVKFAKYNDISSVEKLVN 177
Query: 124 ESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLAS 183
E + + E +QGE G+ + KA+R LC + +IL+IADEIQ G RSG+ A
Sbjct: 178 E---KTCAIILESVQGEGGINPANKDFYKALRKLCDEKDILLIADEIQCGXGRSGKFFAY 234
Query: 184 DWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLD 243
+ ++ PD+ KALG G+ + V+ K ++ G+HGST+GGNPL A A +
Sbjct: 235 EHAQILPDIXTSAKALGCGLSVGAFVINQKVASNSLEAGDHGSTYGGNPLVCAGVNAVFE 294
Query: 244 VIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDIC 303
+ ++EK+ E L L Q L ++ +F ++ K+ +G G + DK+ V +
Sbjct: 295 IFKEEKILENVNKLTPYLEQSLDELINEF-DFCKKRKGLGFXQGLSLDKS---VKVAKVI 350
Query: 304 LKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVLE 346
K +E +L + +R PPL + + E S+ L L+
Sbjct: 351 QKCQENALLLISCGENDLRFLPPLILQKEHIDEXSEKLRKALK 393
>pdb|4ADB|A Chain A, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADB|B Chain B, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADB|C Chain C, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADB|D Chain D, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADC|A Chain A, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADC|B Chain B, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADC|C Chain C, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADC|D Chain D, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADD|A Chain A, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADD|B Chain B, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADD|C Chain C, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADD|D Chain D, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADE|A Chain A, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADE|B Chain B, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
Length = 406
Score = 169 bits (429), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 109/336 (32%), Positives = 167/336 (49%), Gaps = 8/336 (2%)
Query: 2 KALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGY 61
+AL EQA K + + N+ A++L D V N+GAE E ALKLARK +
Sbjct: 62 EALNEQASKFWHTGNGYTNEPVLRLAKKLIDATFADRVFFCNSGAEANEAALKLARK--F 119
Query: 62 VKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKI 121
++ ++ IV+ FHGRTL +S + F PL + DI + +
Sbjct: 120 AHDRYGSHKSGIVAFKNAFHGRTLFTVSAGGQPAYSQDFAPLPADIRHAAYNDINSASAL 179
Query: 122 FKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRML 181
D + EPIQGE GV+ + +L+ +R+LC+++N L+I DE+Q+G+ R+G +
Sbjct: 180 ID---DSTCAVIVEPIQGEGGVVPASNAFLQGLRELCNRHNALLIFDEVQTGVGRTGELY 236
Query: 182 ASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIAS 241
A V PD++ KALGGG PV A+LA +E + G HG+T+GGNPLASAVA
Sbjct: 237 AYMHYGVTPDLLTTAKALGGG-FPVGALLATEECARVMTVGTHGTTYGGNPLASAVAGKV 295
Query: 242 LDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYD 301
L++I ++ + + L I ++ EVRG GL + A
Sbjct: 296 LELINTPEMLNGVKQRHDWFVERLNTINHRY-GLFSEVRGLGLLIGCVLNAD-YAGQAKQ 353
Query: 302 ICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEG 337
I + + G++ +VR P L++S E+ G
Sbjct: 354 ISQEAAKAGVMVLIAGGNVVRFAPALNVSEEEVTTG 389
>pdb|1VEF|A Chain A, Acetylornithine Aminotransferase From Thermus Thermophilus
Hb8
pdb|1VEF|B Chain B, Acetylornithine Aminotransferase From Thermus Thermophilus
Hb8
pdb|1WKG|A Chain A, Acetylornithine Aminotransferase From Thermus Thermophilus
Hb8
pdb|1WKG|B Chain B, Acetylornithine Aminotransferase From Thermus Thermophilus
Hb8
pdb|1WKH|A Chain A, Acetylornithine Aminotransferase From Thermus Thermophilus
Hb8
pdb|1WKH|B Chain B, Acetylornithine Aminotransferase From Thermus Thermophilus
Hb8
Length = 395
Score = 164 bits (416), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 114/347 (32%), Positives = 180/347 (51%), Gaps = 21/347 (6%)
Query: 1 MKALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGYDM--VLPMNTGAEGVETALKLARK 58
++A++ QAE L + F LT++ ++ V P+N+G E E ALK AR
Sbjct: 67 VEAVKRQAETLMAMPQTLPTPMRGEFYRTLTAILPPELNRVFPVNSGTEANEAALKFARA 126
Query: 59 WGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITAL 118
+KKF V+ F GRT+ ++S++ + + F PL+ + + D+ AL
Sbjct: 127 -HTGRKKF-------VAAMRGFSGRTMGSLSVTWEPKYREPFLPLVEPVEFIPYNDVEAL 178
Query: 119 EKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSG 178
++ E + A + EP+QGE GV +L+A R++ + L+I DEIQ+G+ R+G
Sbjct: 179 KRAVDE---ETAAVILEPVQGEGGVRPATPEFLRAAREITQEKGALLILDEIQTGMGRTG 235
Query: 179 RMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVA 238
+ A + + PD++ L KALGGGV P+ + +EV + G HG+TFGGNPLA A
Sbjct: 236 KRFAFEHFGIVPDILTLAKALGGGV-PLGVAVMREEVARSMPKGGHGTTFGGNPLAMAAG 294
Query: 239 IASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVS 298
+A++ + +L ER+A LG + L I ++EVRG GL +E + A P
Sbjct: 295 VAAIRYLERTRLWERAAELGPWFMEKLRAIPSP---KIREVRGMGLMVGLELKEKAAPY- 350
Query: 299 AYDICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVL 345
I KE +LA T++R PPL I +L+ +A+ VL
Sbjct: 351 ---IARLEKEHRVLALQAGPTVIRFLPPLVIEKEDLERVVEAVRAVL 394
>pdb|3OKS|A Chain A, Crystal Structure Of 4-Aminobutyrate Transaminase From
Mycobacterium Smegmatis
pdb|3OKS|B Chain B, Crystal Structure Of 4-Aminobutyrate Transaminase From
Mycobacterium Smegmatis
pdb|3OKS|C Chain C, Crystal Structure Of 4-Aminobutyrate Transaminase From
Mycobacterium Smegmatis
pdb|3OKS|D Chain D, Crystal Structure Of 4-Aminobutyrate Transaminase From
Mycobacterium Smegmatis
Length = 451
Score = 164 bits (416), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 112/345 (32%), Positives = 172/345 (49%), Gaps = 37/345 (10%)
Query: 28 ERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAA 87
RLT + G N+G+E VE A+K+AR + + D A +HGRT
Sbjct: 114 NRLTPVRGDKRSALFNSGSEAVENAVKIARSHTHKPAVVAFDHA--------YHGRTNLT 165
Query: 88 ISMSCDNEAIR-GFGPLLP----GHLKVDFGDIT---------------ALEKIFKESG- 126
++++ + GFGP P L F D A+ I K+ G
Sbjct: 166 MALTAKVMPYKDGFGPFAPEIYRAPLSYPFRDAEFGKELATDGELAAKRAITVIDKQIGA 225
Query: 127 DQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWE 186
D +A + EPIQGE G I+P DG+L + D C K +++ IADE+Q+G AR+G M A + E
Sbjct: 226 DNLAAVVIEPIQGEGGFIVPADGFLPTLLDWCRKNDVVFIADEVQTGFARTGAMFACEHE 285
Query: 187 EVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIR 246
+ PD+++ + GG +P+SAV E+M G T+GGNP+A A A+A+++ I
Sbjct: 286 GIDPDLIVTAXGIAGG-LPLSAVTGRAEIMDSPHVSGLGGTYGGNPIACAAALATIETIE 344
Query: 247 DEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYD----I 302
E L R+ + + ++ L ++Q + + + +VRGRG A+E K D +
Sbjct: 345 SEGLVARAQQIEKIMKDRLGRLQAE-DDRIGDVRGRGAMIAMELVKAGTTEPDADLTKAL 403
Query: 303 CLKMKERG--ILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVL 345
C G +L+ T+ +VR PPLSI + L EG L +VL
Sbjct: 404 CAGAHAAGVIVLSCGTYGNVVRFLPPLSIGDDLLNEGLDVLEEVL 448
>pdb|2EO5|A Chain A, Crystal Structure Of 4-Aminobutyrate Aminotransferase From
Sulfolobus Tokodaii Strain7
Length = 419
Score = 158 bits (400), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 113/373 (30%), Positives = 182/373 (48%), Gaps = 56/373 (15%)
Query: 6 EQAEKLT-LSSRAFYNDKFPVFAERLTSMFGYDM---VLPMNTGAEGVETALKLARKWGY 61
EQ +KL ++ FYN A++L + + V N+G E +E ++K+ + G
Sbjct: 70 EQMQKLAHAAANDFYNIPQLELAKKLVTYSPGNFQKKVFFSNSGTEAIEASIKVVKNTG- 128
Query: 62 VKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGF-GPLLPGHLKVDFGD------ 114
+K+ I++ G FHGRT +IS++ R GP +PG + V + +
Sbjct: 129 --RKY------IIAFLGGFHGRTFGSISLTASKAVQRSIVGPFMPGVIHVPYPNPYRNPW 180
Query: 115 -ITALEK---------------IFKE--SGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRD 156
I E IF +++AG FEPIQGE G +IPP + ++
Sbjct: 181 HINGYENPSELVNRVIEFIEDYIFVNLVPPEEVAGIFFEPIQGEGGYVIPPKNFFAELQK 240
Query: 157 LCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVM 216
L KY IL++ DE+Q GL R+G++ A + PD++ L KALGGG++P+ A + K+
Sbjct: 241 LAKKYGILLVDDEVQMGLGRTGKLFAIENFNTVPDVITLAKALGGGIMPIGATIFRKD-- 298
Query: 217 LCIQPGEHGSTFGGNPLASAVAIASLDVIRD--EKLAERSAHLGEELRQHLFKIQQQFPN 274
L +PG H +TFGGN LA A+ +D+++D + E EEL+
Sbjct: 299 LDFKPGMHSNTFGGNALACAIGSKVIDIVKDLLPHVNEIGKIFAEELQ-----------G 347
Query: 275 YVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTHDTIVRLTPPLSISSNEL 334
+VRG GL +E+++ + K RG+L P + +R+ PPL IS E
Sbjct: 348 LADDVRGIGLAWGLEYNEKKVRDRIIGESFK---RGLLLLPAGRSAIRVIPPLVISEEEA 404
Query: 335 QEGSKALHDVLEL 347
++G L V+++
Sbjct: 405 KQGLDILKKVIKV 417
>pdb|3Q8N|A Chain A, Crystal Structure Of 4-Aminobutyrate Transaminase From
Mycobacterium Smegmatis
pdb|3Q8N|B Chain B, Crystal Structure Of 4-Aminobutyrate Transaminase From
Mycobacterium Smegmatis
pdb|3Q8N|C Chain C, Crystal Structure Of 4-Aminobutyrate Transaminase From
Mycobacterium Smegmatis
pdb|3Q8N|D Chain D, Crystal Structure Of 4-Aminobutyrate Transaminase From
Mycobacterium Smegmatis
Length = 453
Score = 150 bits (378), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 111/339 (32%), Positives = 169/339 (49%), Gaps = 39/339 (11%)
Query: 28 ERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAA 87
E+ T++F N+GAE VE A+K+AR + + D A +HGRT
Sbjct: 129 EKRTALF--------NSGAEAVENAVKIARAYTRRQAVVVFDHA--------YHGRTNLT 172
Query: 88 ISMSCDNEAIR-GFGPL------LPGHLKVDFGDI-------TALEKIFKESG-DQIAGF 132
++M+ N+ + GFGP +P G+ AL+ I K+ G D +A
Sbjct: 173 MAMTAKNQPYKHGFGPFANEVYRVPTSYPFRDGETDGAAAAAHALDLINKQVGADNVAAV 232
Query: 133 LFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDM 192
+ EP+ GE G ++P G+L A++ C+ + +ADE+Q+G AR+G + A + E V PD+
Sbjct: 233 VIEPVHGEGGFVVPAPGFLGALQKWCTDNGAVFVADEVQTGFARTGALFACEHENVVPDL 292
Query: 193 VILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRDEKLAE 252
++ K + GG +P+SAV E+M Q G G T+GGNPLA A A+A +D I E L
Sbjct: 293 IVTAKGIAGG-LPLSAVTGRAEIMDGPQSGGLGGTYGGNPLACAAALAVIDTIERENLVA 351
Query: 253 RSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERG-- 310
R+ +GE + L + P + EVRGRG AVE K D+ ++
Sbjct: 352 RARAIGETMLSRLGALAAADPR-IGEVRGRGAMIAVELVKPGTTEPDADLTKRVAAAAHA 410
Query: 311 ----ILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVL 345
+L T+ ++R PPLS+ + L EG L V
Sbjct: 411 QGLVVLTCGTYGNVLRFLPPLSMPDHLLDEGLDILAAVF 449
>pdb|3R4T|A Chain A, Crystal Structure Of 4-Aminobutyrate Aminotransferase Gabt
From Mycobacterium Marinum Covalently Bound To Pyridoxal
Phosphate
Length = 467
Score = 149 bits (376), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 114/376 (30%), Positives = 181/376 (48%), Gaps = 41/376 (10%)
Query: 1 MKALQEQAEKLTLSSRAFY-NDKFPVFAE---RLTSMFGYDMVLPMNTGAEGVETALKLA 56
+ A+++Q E+ T + +++ AE R+T G + N+GAE VE ++K+A
Sbjct: 100 VDAVRDQVEQFTHTCFMVTPYEQYVAVAEQLNRITPGSGEKRTVLFNSGAEAVENSIKVA 159
Query: 57 RKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIR-GFGPLLPGHLKVDFG-- 113
R + + D A +HGRT ++++ + + GFGP P +
Sbjct: 160 RAHTRKQAVVAFDYA--------YHGRTNLTMALTAKSMPYKSGFGPFAPEIYRAPVSYP 211
Query: 114 --------DIT---------ALEKIFKESGD-QIAGFLFEPIQGEAGVIIPPDGYLKAVR 155
DI A+ I K+ G +A + EPI GE G I+P DG+L A++
Sbjct: 212 YRDNLLDKDIATDGELAAERAINLIDKQIGAANLAAVIIEPIAGEGGFIVPADGFLPALQ 271
Query: 156 DLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEV 215
C +++ IADE+Q+G AR+G M A D E V PD+++ + G P+SAV E+
Sbjct: 272 RWCRDNDVVFIADEVQTGFARTGAMFACDHENVEPDLIVTAXGIADG-FPLSAVTGRAEI 330
Query: 216 MLCIQPGEHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNY 275
M G TFGGNP+A A A+A+++ I + + ER+ + + L ++Q +
Sbjct: 331 MDAPHTSGLGGTFGGNPVACAAALATIETIERDGMVERARQIERLVMDRLLRLQAA-DDR 389
Query: 276 VKEVRGRGLFNAVEFDK--TALPVSAYDICLKMKERG----ILAKPTHDTIVRLTPPLSI 329
+ +VRGRG A+E K TA P +A L +L ++RL PPL+I
Sbjct: 390 LGDVRGRGAMIAMELVKSGTAEPDAALTQKLAAAAHAAGVIVLTCGMFGNVIRLLPPLTI 449
Query: 330 SSNELQEGSKALHDVL 345
S L EG L +L
Sbjct: 450 SDELLSEGLDILCQIL 465
>pdb|3DU4|A Chain A, Crystal Structure Of 7-Keto-8-Aminopelargonic Acid Bound
7,8- Diaminopelargonic Acid Synthase In Bacillus
Subtilis
pdb|3DU4|B Chain B, Crystal Structure Of 7-Keto-8-Aminopelargonic Acid Bound
7,8- Diaminopelargonic Acid Synthase In Bacillus
Subtilis
Length = 448
Score = 149 bits (375), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 106/357 (29%), Positives = 182/357 (50%), Gaps = 47/357 (13%)
Query: 28 ERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAA 87
++LT +F D +GAE +E ALK+A + Y K ++ ++ +HG T+ A
Sbjct: 102 KKLTRVFYSD------SGAEAMEIALKMA--FQYWKNIGKPEKQKFIAMKNGYHGDTIGA 153
Query: 88 ISMSCDNEAIRGFGPLL--------PGHLKVDFGD--------ITALEKIFKESGDQIAG 131
+S+ +GPL+ P + + GD + L ++ +E ++IA
Sbjct: 154 VSVGSIELFHHVYGPLMFESYKAPIPYVYRSESGDPDECRDQXLRELAQLLEEHHEEIAA 213
Query: 132 FLFEP-IQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRP 190
E +QG +G+I+ P+GYL VR+LC+ Y++LMI DE+ +G R+G+M A + E V+P
Sbjct: 214 LSIESMVQGASGMIVMPEGYLAGVRELCTTYDVLMIVDEVATGFGRTGKMFACEHENVQP 273
Query: 191 DMVILGKALGGGVIPVSAVLADKEVMLC-------IQPGEHGSTFGGNPLASAVAIASLD 243
D++ GK + GG +P++ A +++ ++ HG ++ GN L AVA+ +L
Sbjct: 274 DLMAAGKGITGGYLPIAVTFATEDIYKAFYDDYENLKTFFHGHSYTGNQLGCAVALENLA 333
Query: 244 VIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEF---DKTALPVSA- 299
+ E + E+ A ++L L + P +V ++R G E +T P A
Sbjct: 334 LFESENIVEQVAEKSKKL-HFLLQDLHALP-HVGDIRQLGFMCGAELVRSKETKEPYPAD 391
Query: 300 ----YDICLKMKERGILAKPTHDTIVRLTPPLSISSNELQE----GSKALHDVLELD 348
Y + LKM+E G+L +P D I L PPL+ ++ EL E +A+H+V L+
Sbjct: 392 RRIGYKVSLKMRELGMLTRPLGDVIAFL-PPLASTAEELSEMVAIMKQAIHEVTSLE 447
>pdb|3DOD|A Chain A, Crystal Structure Of Plp Bound 7,8-diaminopelargonic Acid
Synthase In Bacillus Subtilis
pdb|3DOD|B Chain B, Crystal Structure Of Plp Bound 7,8-diaminopelargonic Acid
Synthase In Bacillus Subtilis
pdb|3DRD|A Chain A, Crystal Structure Of 7,8 Diaminopelargonic Acid Synthase
Apoenzyme In Bacillus Subtilis
pdb|3DRD|B Chain B, Crystal Structure Of 7,8 Diaminopelargonic Acid Synthase
Apoenzyme In Bacillus Subtilis
Length = 448
Score = 149 bits (375), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 106/357 (29%), Positives = 182/357 (50%), Gaps = 47/357 (13%)
Query: 28 ERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAA 87
++LT +F D +GAE +E ALK+A + Y K ++ ++ +HG T+ A
Sbjct: 102 KKLTRVFYSD------SGAEAMEIALKMA--FQYWKNIGKPEKQKFIAMKNGYHGDTIGA 153
Query: 88 ISMSCDNEAIRGFGPLL--------PGHLKVDFGD--------ITALEKIFKESGDQIAG 131
+S+ +GPL+ P + + GD + L ++ +E ++IA
Sbjct: 154 VSVGSIELFHHVYGPLMFESYKAPIPYVYRSESGDPDECRDQCLRELAQLLEEHHEEIAA 213
Query: 132 FLFEP-IQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRP 190
E +QG +G+I+ P+GYL VR+LC+ Y++LMI DE+ +G R+G+M A + E V+P
Sbjct: 214 LSIESMVQGASGMIVMPEGYLAGVRELCTTYDVLMIVDEVATGFGRTGKMFACEHENVQP 273
Query: 191 DMVILGKALGGGVIPVSAVLADKEVMLC-------IQPGEHGSTFGGNPLASAVAIASLD 243
D++ GK + GG +P++ A +++ ++ HG ++ GN L AVA+ +L
Sbjct: 274 DLMAAGKGITGGYLPIAVTFATEDIYKAFYDDYENLKTFFHGHSYTGNQLGCAVALENLA 333
Query: 244 VIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEF---DKTALPVSA- 299
+ E + E+ A ++L L + P +V ++R G E +T P A
Sbjct: 334 LFESENIVEQVAEKSKKL-HFLLQDLHALP-HVGDIRQLGFMCGAELVRSKETKEPYPAD 391
Query: 300 ----YDICLKMKERGILAKPTHDTIVRLTPPLSISSNELQE----GSKALHDVLELD 348
Y + LKM+E G+L +P D I L PPL+ ++ EL E +A+H+V L+
Sbjct: 392 RRIGYKVSLKMRELGMLTRPLGDVIAFL-PPLASTAEELSEMVAIMKQAIHEVTSLE 447
>pdb|1SZS|A Chain A, The Structure Of Gamma-aminobutyrate Aminotransferase
Mutant: I50q
pdb|1SZS|B Chain B, The Structure Of Gamma-aminobutyrate Aminotransferase
Mutant: I50q
pdb|1SZS|C Chain C, The Structure Of Gamma-aminobutyrate Aminotransferase
Mutant: I50q
pdb|1SZS|D Chain D, The Structure Of Gamma-aminobutyrate Aminotransferase
Mutant: I50q
Length = 426
Score = 142 bits (359), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 95/321 (29%), Positives = 168/321 (52%), Gaps = 34/321 (10%)
Query: 39 VLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCD-NEAI 97
L + TG+E VE A+K+AR + + ++ G +HGRT ++++ N
Sbjct: 105 TLLVTTGSEAVENAVKIARA--------ATKRSGTIAFSGAYHGRTHYTLALTGKVNPYS 156
Query: 98 RGFGPLLPGHL----------KVDFGD-ITALEKIFKESG--DQIAGFLFEPIQGEAGVI 144
G G L+PGH+ + D I ++ +IFK + IA + EP+QGE G
Sbjct: 157 AGMG-LMPGHVYRALYPCPLHGISEDDAIASIHRIFKNDAAPEDIAAIVIEPVQGEGGFY 215
Query: 145 IPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVI 204
+++ +R LC ++ I++IADE+QSG R+G + A + V PD+ K++ GG
Sbjct: 216 ASSPAFMQRLRALCDEHGIMLIADEVQSGAGRTGTLFAMEQMGVAPDLTTFAKSIAGG-F 274
Query: 205 PVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQH 264
P++ V EVM + PG G T+ GNP+A A+ L V E L +++ LG++L+
Sbjct: 275 PLAGVTGRAEVMDAVAPGGLGGTYAGNPIACVAALEVLKVFEQENLLQKANDLGQKLKDG 334
Query: 265 LFKIQQQFPNYVKEVRGRGLFNAVEF------DKTALPVSAYDICLKMKERG--ILAKPT 316
L I ++ P + +VRG G A+E +K ++A +I + +++G +L+
Sbjct: 335 LLAIAEKHPE-IGDVRGLGAMIAIELFEDGDHNKPDAKLTA-EIVARARDKGLILLSCGP 392
Query: 317 HDTIVRLTPPLSISSNELQEG 337
+ ++R+ PL+I ++++G
Sbjct: 393 YYNVLRILVPLTIEDAQIRQG 413
>pdb|1SF2|A Chain A, Structure Of E. Coli Gamma-Aminobutyrate Aminotransferase
pdb|1SF2|B Chain B, Structure Of E. Coli Gamma-Aminobutyrate Aminotransferase
pdb|1SF2|C Chain C, Structure Of E. Coli Gamma-Aminobutyrate Aminotransferase
pdb|1SF2|D Chain D, Structure Of E. Coli Gamma-Aminobutyrate Aminotransferase
pdb|1SFF|A Chain A, Structure Of Gamma-Aminobutyrate Aminotransferase Complex
With Aminooxyacetate
pdb|1SFF|B Chain B, Structure Of Gamma-Aminobutyrate Aminotransferase Complex
With Aminooxyacetate
pdb|1SFF|C Chain C, Structure Of Gamma-Aminobutyrate Aminotransferase Complex
With Aminooxyacetate
pdb|1SFF|D Chain D, Structure Of Gamma-Aminobutyrate Aminotransferase Complex
With Aminooxyacetate
Length = 426
Score = 142 bits (359), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 95/321 (29%), Positives = 168/321 (52%), Gaps = 34/321 (10%)
Query: 39 VLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCD-NEAI 97
L + TG+E VE A+K+AR + + ++ G +HGRT ++++ N
Sbjct: 105 TLLVTTGSEAVENAVKIARA--------ATKRSGTIAFSGAYHGRTHYTLALTGKVNPYS 156
Query: 98 RGFGPLLPGHL----------KVDFGD-ITALEKIFKESG--DQIAGFLFEPIQGEAGVI 144
G G L+PGH+ + D I ++ +IFK + IA + EP+QGE G
Sbjct: 157 AGMG-LMPGHVYRALYPCPLHGISEDDAIASIHRIFKNDAAPEDIAAIVIEPVQGEGGFY 215
Query: 145 IPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVI 204
+++ +R LC ++ I++IADE+QSG R+G + A + V PD+ K++ GG
Sbjct: 216 ASSPAFMQRLRALCDEHGIMLIADEVQSGAGRTGTLFAMEQMGVAPDLTTFAKSIAGG-F 274
Query: 205 PVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQH 264
P++ V EVM + PG G T+ GNP+A A+ L V E L +++ LG++L+
Sbjct: 275 PLAGVTGRAEVMDAVAPGGLGGTYAGNPIACVAALEVLKVFEQENLLQKANDLGQKLKDG 334
Query: 265 LFKIQQQFPNYVKEVRGRGLFNAVEF------DKTALPVSAYDICLKMKERG--ILAKPT 316
L I ++ P + +VRG G A+E +K ++A +I + +++G +L+
Sbjct: 335 LLAIAEKHPE-IGDVRGLGAMIAIELFEDGDHNKPDAKLTA-EIVARARDKGLILLSCGP 392
Query: 317 HDTIVRLTPPLSISSNELQEG 337
+ ++R+ PL+I ++++G
Sbjct: 393 YYNVLRILVPLTIEDAQIRQG 413
>pdb|1SZU|A Chain A, The Structure Of Gamma-Aminobutyrate Aminotransferase
Mutant: V241a
pdb|1SZU|B Chain B, The Structure Of Gamma-Aminobutyrate Aminotransferase
Mutant: V241a
pdb|1SZU|C Chain C, The Structure Of Gamma-Aminobutyrate Aminotransferase
Mutant: V241a
pdb|1SZU|D Chain D, The Structure Of Gamma-Aminobutyrate Aminotransferase
Mutant: V241a
Length = 426
Score = 141 bits (355), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 95/321 (29%), Positives = 167/321 (52%), Gaps = 34/321 (10%)
Query: 39 VLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCD-NEAI 97
L + TG+E VE A+K+AR + + ++ G +HGRT ++++ N
Sbjct: 105 TLLVTTGSEAVENAVKIARA--------ATKRSGTIAFSGAYHGRTHYTLALTGKVNPYS 156
Query: 98 RGFGPLLPGHL----------KVDFGD-ITALEKIFKESG--DQIAGFLFEPIQGEAGVI 144
G G L+PGH+ + D I ++ +IFK + IA + EP+QGE G
Sbjct: 157 AGMG-LMPGHVYRALYPCPLHGISEDDAIASIHRIFKNDAAPEDIAAIVIEPVQGEGGFY 215
Query: 145 IPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVI 204
+++ +R LC ++ I++IADE QSG R+G + A + V PD+ K++ GG
Sbjct: 216 ASSPAFMQRLRALCDEHGIMLIADEAQSGAGRTGTLFAMEQMGVAPDLTTFAKSIAGG-F 274
Query: 205 PVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQH 264
P++ V EVM + PG G T+ GNP+A A+ L V E L +++ LG++L+
Sbjct: 275 PLAGVTGRAEVMDAVAPGGLGGTYAGNPIACVAALEVLKVFEQENLLQKANDLGQKLKDG 334
Query: 265 LFKIQQQFPNYVKEVRGRGLFNAVEF------DKTALPVSAYDICLKMKERG--ILAKPT 316
L I ++ P + +VRG G A+E +K ++A +I + +++G +L+
Sbjct: 335 LLAIAEKHPE-IGDVRGLGAMIAIELFEDGDHNKPDAKLTA-EIVARARDKGLILLSCGP 392
Query: 317 HDTIVRLTPPLSISSNELQEG 337
+ ++R+ PL+I ++++G
Sbjct: 393 YYNVLRILVPLTIEDAQIRQG 413
>pdb|1SZK|A Chain A, The Structure Of Gamma-Aminobutyrate Aminotransferase
Mutant: E211s
pdb|1SZK|B Chain B, The Structure Of Gamma-Aminobutyrate Aminotransferase
Mutant: E211s
pdb|1SZK|C Chain C, The Structure Of Gamma-Aminobutyrate Aminotransferase
Mutant: E211s
pdb|1SZK|D Chain D, The Structure Of Gamma-Aminobutyrate Aminotransferase
Mutant: E211s
Length = 426
Score = 140 bits (354), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 94/321 (29%), Positives = 167/321 (52%), Gaps = 34/321 (10%)
Query: 39 VLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCD-NEAI 97
L + TG+E VE A+K+AR + + ++ G +HGRT ++++ N
Sbjct: 105 TLLVTTGSEAVENAVKIARA--------ATKRSGTIAFSGAYHGRTHYTLALTGKVNPYS 156
Query: 98 RGFGPLLPGHL----------KVDFGD-ITALEKIFKESG--DQIAGFLFEPIQGEAGVI 144
G G L+PGH+ + D I ++ +IFK + IA + EP+QG G
Sbjct: 157 AGMG-LMPGHVYRALYPCPLHGISEDDAIASIHRIFKNDAAPEDIAAIVIEPVQGSGGFY 215
Query: 145 IPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVI 204
+++ +R LC ++ I++IADE+QSG R+G + A + V PD+ K++ GG
Sbjct: 216 ASSPAFMQRLRALCDEHGIMLIADEVQSGAGRTGTLFAMEQMGVAPDLTTFAKSIAGG-F 274
Query: 205 PVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQH 264
P++ V EVM + PG G T+ GNP+A A+ L V E L +++ LG++L+
Sbjct: 275 PLAGVTGRAEVMDAVAPGGLGGTYAGNPIACVAALEVLKVFEQENLLQKANDLGQKLKDG 334
Query: 265 LFKIQQQFPNYVKEVRGRGLFNAVEF------DKTALPVSAYDICLKMKERG--ILAKPT 316
L I ++ P + +VRG G A+E +K ++A +I + +++G +L+
Sbjct: 335 LLAIAEKHPE-IGDVRGLGAMIAIELFEDGDHNKPDAKLTA-EIVARARDKGLILLSCGP 392
Query: 317 HDTIVRLTPPLSISSNELQEG 337
+ ++R+ PL+I ++++G
Sbjct: 393 YYNVLRILVPLTIEDAQIRQG 413
>pdb|4FFC|A Chain A, Crystal Structure Of A 4-Aminobutyrate Aminotransferase
(Gabt) From Mycobacterium Abscessus
pdb|4FFC|B Chain B, Crystal Structure Of A 4-Aminobutyrate Aminotransferase
(Gabt) From Mycobacterium Abscessus
pdb|4FFC|C Chain C, Crystal Structure Of A 4-Aminobutyrate Aminotransferase
(Gabt) From Mycobacterium Abscessus
pdb|4FFC|D Chain D, Crystal Structure Of A 4-Aminobutyrate Aminotransferase
(Gabt) From Mycobacterium Abscessus
Length = 453
Score = 136 bits (343), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 106/326 (32%), Positives = 168/326 (51%), Gaps = 32/326 (9%)
Query: 42 MNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRG-F 100
N+GAE VE A+K+AR + +V+ +HGRT ++++ + + F
Sbjct: 131 FNSGAEAVENAIKVAR--------LATGRPAVVAFDNAYHGRTNLTMALTAKSMPYKSQF 182
Query: 101 GPLLPGHLKV-------DFGDIT-------ALEKIFKESGDQ-IAGFLFEPIQGEAGVII 145
GP P ++ D +T A+ +I + G Q +A + EPIQGE G I+
Sbjct: 183 GPFAPEVYRMPASYPLRDEPGLTGEEAARRAISRIETQIGAQSLAAIIIEPIQGEGGFIV 242
Query: 146 PPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIP 205
P G+L + S+ ++ IADE+Q+G AR+G AS+ E + PD+V + + GG +P
Sbjct: 243 PAPGFLATLTAWASENGVVFIADEVQTGFARTGAWFASEHEGIVPDIVTMAXGIAGG-MP 301
Query: 206 VSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHL 265
+SAV E+M + G G T+GGNP+ A A+A+L V+R+ L R+ + + L
Sbjct: 302 LSAVTGRAELMDAVYAGGLGGTYGGNPVTCAAAVAALGVMRELDLPARARAIEASVTSRL 361
Query: 266 FKIQQQFPNYVKEVRGRGLFNAVEFDK--TALPVSAY--DICLKMKERG--ILAKPTHDT 319
+ ++ + + EVRGRG A+E K T P +A I + +G IL T
Sbjct: 362 SALAEEV-DIIGEVRGRGAMLAIEIVKPGTLEPDAALTKSIAAEALSQGVLILTCGTFGN 420
Query: 320 IVRLTPPLSISSNELQEGSKALHDVL 345
++RL PPL I + L EG AL D++
Sbjct: 421 VIRLLPPLVIGDDLLDEGITALSDII 446
>pdb|3N5M|A Chain A, Crystals Structure Of A Bacillus Anthracis
Aminotransferase
pdb|3N5M|B Chain B, Crystals Structure Of A Bacillus Anthracis
Aminotransferase
pdb|3N5M|C Chain C, Crystals Structure Of A Bacillus Anthracis
Aminotransferase
pdb|3N5M|D Chain D, Crystals Structure Of A Bacillus Anthracis
Aminotransferase
Length = 452
Score = 130 bits (327), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 102/349 (29%), Positives = 167/349 (47%), Gaps = 46/349 (13%)
Query: 26 FAERLTSMFGYDMVLPM-NTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRT 84
AE+L G + V+ N+G+E ETA K+AR+ Y +K S +HG T
Sbjct: 96 LAEKLNEWLGGEYVIFFSNSGSEANETAFKIARQ--YYAQKGEPHRYKFXSRYRGYHGNT 153
Query: 85 LAAISMSCDNEAIRGFGPLLPGHLKV--------------DFGDITALEKIFK----ESG 126
A + + + + P G L V + D+ ++++ + E
Sbjct: 154 XATXAATGQAQRRYQYEPFASGFLHVTPPDCYRXPGIERENIYDVECVKEVDRVXTWELS 213
Query: 127 DQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWE 186
+ IA F+ EPI G++ P Y KAV + C K+ L+I+DE+ G R+G+
Sbjct: 214 ETIAAFIXEPIITGGGILXAPQDYXKAVHETCQKHGALLISDEVICGFGRTGKAFGFXNY 273
Query: 187 EVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQ-PGE-----HGSTFGGNPLASAVAIA 240
+V+PD++ K + +P+SA +E+ + GE H +TFGGNP A A+A+
Sbjct: 274 DVKPDIITXAKGITSAYLPLSATAVKREIYEAFKGKGEYEFFRHINTFGGNPAACALALK 333
Query: 241 SLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEF---DKTALPV 297
+L++I +E L ERSA G L + L + + P V ++RG+GL +E +T P+
Sbjct: 334 NLEIIENENLIERSAQXGSLLLEQLKEEIGEHP-LVGDIRGKGLLVGIELVNDKETKEPI 392
Query: 298 ------SAYDICLKMKERGIL------AKPTHDTIVRLTPPLSISSNEL 334
S + C KE+G++ ++ I+ L PPL ISS E+
Sbjct: 393 DNDKIASVVNAC---KEKGLIIGRNGXTTAGYNNILTLAPPLVISSEEI 438
>pdb|4ATP|A Chain A, Structure Of Gaba-Transaminase A1r958 From Arthrobacter
Aurescens In Complex With Plp
pdb|4ATP|B Chain B, Structure Of Gaba-Transaminase A1r958 From Arthrobacter
Aurescens In Complex With Plp
pdb|4ATP|C Chain C, Structure Of Gaba-Transaminase A1r958 From Arthrobacter
Aurescens In Complex With Plp
pdb|4ATP|D Chain D, Structure Of Gaba-Transaminase A1r958 From Arthrobacter
Aurescens In Complex With Plp
pdb|4ATP|E Chain E, Structure Of Gaba-Transaminase A1r958 From Arthrobacter
Aurescens In Complex With Plp
pdb|4ATP|F Chain F, Structure Of Gaba-Transaminase A1r958 From Arthrobacter
Aurescens In Complex With Plp
pdb|4ATP|G Chain G, Structure Of Gaba-Transaminase A1r958 From Arthrobacter
Aurescens In Complex With Plp
pdb|4ATP|H Chain H, Structure Of Gaba-Transaminase A1r958 From Arthrobacter
Aurescens In Complex With Plp
pdb|4ATP|I Chain I, Structure Of Gaba-Transaminase A1r958 From Arthrobacter
Aurescens In Complex With Plp
pdb|4ATP|J Chain J, Structure Of Gaba-Transaminase A1r958 From Arthrobacter
Aurescens In Complex With Plp
pdb|4ATP|K Chain K, Structure Of Gaba-Transaminase A1r958 From Arthrobacter
Aurescens In Complex With Plp
pdb|4ATP|L Chain L, Structure Of Gaba-Transaminase A1r958 From Arthrobacter
Aurescens In Complex With Plp
pdb|4ATQ|A Chain A, Gaba-Transaminase A1r958 In Complex With External Aldimine
Plp-Gaba Adduct
pdb|4ATQ|B Chain B, Gaba-Transaminase A1r958 In Complex With External Aldimine
Plp-Gaba Adduct
pdb|4ATQ|C Chain C, Gaba-Transaminase A1r958 In Complex With External Aldimine
Plp-Gaba Adduct
pdb|4ATQ|D Chain D, Gaba-Transaminase A1r958 In Complex With External Aldimine
Plp-Gaba Adduct
pdb|4ATQ|E Chain E, Gaba-Transaminase A1r958 In Complex With External Aldimine
Plp-Gaba Adduct
pdb|4ATQ|F Chain F, Gaba-Transaminase A1r958 In Complex With External Aldimine
Plp-Gaba Adduct
pdb|4ATQ|G Chain G, Gaba-Transaminase A1r958 In Complex With External Aldimine
Plp-Gaba Adduct
pdb|4ATQ|H Chain H, Gaba-Transaminase A1r958 In Complex With External Aldimine
Plp-Gaba Adduct
pdb|4ATQ|I Chain I, Gaba-Transaminase A1r958 In Complex With External Aldimine
Plp-Gaba Adduct
pdb|4ATQ|J Chain J, Gaba-Transaminase A1r958 In Complex With External Aldimine
Plp-Gaba Adduct
pdb|4ATQ|K Chain K, Gaba-Transaminase A1r958 In Complex With External Aldimine
Plp-Gaba Adduct
pdb|4ATQ|L Chain L, Gaba-Transaminase A1r958 In Complex With External Aldimine
Plp-Gaba Adduct
Length = 456
Score = 130 bits (326), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 104/330 (31%), Positives = 165/330 (50%), Gaps = 42/330 (12%)
Query: 42 MNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIR-GF 100
N+GAE VE A+K+AR + +V+ +HGRT ++++ + F
Sbjct: 131 FNSGAEAVENAVKVAR--------LATGRDAVVAFDHAYHGRTNLTMALTAKAMPYKTNF 182
Query: 101 GPLLPGHLKVDFG------------------DITALEKIFKESGDQIAGFLFEPIQGEAG 142
GP P ++ IT +EK + GDQ+A + EPIQGE G
Sbjct: 183 GPFAPEVYRMPMSYPFREENPEITGAEAAKRAITMIEK--QIGGDQVAAIIIEPIQGEGG 240
Query: 143 VIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGG 202
I+P +G+L A+ + + I+ IADE+QSG R+G A D E V PD++ + K + GG
Sbjct: 241 FIVPAEGFLPALSEWAKEKGIVFIADEVQSGFCRTGEWFAVDHEGVVPDIITMAKGIAGG 300
Query: 203 VIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGE--- 259
+P+SA+ +++ + PG G T+GGNP+A A A+A++D + L R+ H+ E
Sbjct: 301 -LPLSAITGRADLLDAVHPGGLGGTYGGNPVACAAALAAIDTMEQHDLNGRARHIEELAL 359
Query: 260 -ELRQHLFKIQQQFPNYVKEVRGRGLFNAVEF-------DKTALPVSAYDICLKMKERGI 311
+LR+ ++ + V ++RGRG A+E L + CLK + I
Sbjct: 360 GKLRELAAELSAGGGSVVGDIRGRGAMLAIELVQPGSKEPNAELTKAVAAACLK-EGVII 418
Query: 312 LAKPTHDTIVRLTPPLSISSNELQEGSKAL 341
L T+ ++RL PPL IS L +G + L
Sbjct: 419 LTCGTYGNVIRLLPPLVISDELLIDGLEVL 448
>pdb|1Z3Z|A Chain A, The Crystal Structure Of A Dgd Mutant: Q52a
Length = 431
Score = 125 bits (314), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 103/356 (28%), Positives = 169/356 (47%), Gaps = 50/356 (14%)
Query: 26 FAERLTSMF--GYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGR 83
A RL ++ G D L ++TGAE E A+++A+ V K+ I V +HG
Sbjct: 88 LATRLANITPPGLDRALLLSTGAESNEAAIRMAK---LVTGKYEI-----VGFAQSWHGM 139
Query: 84 TLAAISMSCDNEAIRGFGPLLPGHLKV--------------DFGDITALEKIF----KES 125
T AA S + + +G GP G + + + L+ F ++S
Sbjct: 140 TGAAASATY-SAGRKGVGPAAVGSFAIPAPFTYRPRFERNGAYDYLAELDYAFDLIDRQS 198
Query: 126 GDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDW 185
+A F+ EPI G+I PDGY+ A++ C +L+I DE Q+G+ R+G M A
Sbjct: 199 SGNLAAFIAEPILSSGGIIELPDGYMAALKRKCEARGMLLILDEAQTGVGRTGTMFACQR 258
Query: 186 EEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHG------STFGGNPLASAVAI 239
+ V PD++ L K LG G +P++A++ I+ H +T +PL +AV +
Sbjct: 259 DGVTPDILTLSKTLGAG-LPLAAIVTSA----AIEERAHELGYLFYTTHVSDPLPAAVGL 313
Query: 240 ASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDK---TALP 296
LDV++ + L R+ +G+ LR+ L + ++F + + +VRGRGL VE K T P
Sbjct: 314 RVLDVVQRDGLVARANVMGDRLRRGLLDLMERF-DCIGDVRGRGLLLGVEIVKDRRTKEP 372
Query: 297 VSAYDI-----CLKMK-ERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVLE 346
C+ + I+ P + R+ PPL++S +E+ G L +E
Sbjct: 373 ADGLGAKITRECMNLGLSMNIVQLPGMGGVFRIAPPLTVSEDEIDLGLSLLGQAIE 428
>pdb|1DGD|A Chain A, An Alkali Metal Ion Size-Dependent Switch In The Active
Site Structure Of Dialkylglycine Decarboxylase
pdb|1DGE|A Chain A, An Alkali Metal Ion Size-Dependent Switch In The Active
Site Structure Of Dialkylglycine Decarboxylase
Length = 432
Score = 125 bits (314), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 103/356 (28%), Positives = 169/356 (47%), Gaps = 50/356 (14%)
Query: 26 FAERLTSMF--GYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGR 83
A RL ++ G D L ++TGAE E A+++A+ V K+ I V +HG
Sbjct: 89 LATRLANITPPGLDRALLLSTGAESNEAAIRMAK---LVTGKYEI-----VGFAQSWHGM 140
Query: 84 TLAAISMSCDNEAIRGFGPLLPGHLKV--------------DFGDITALEKIF----KES 125
T AA S + + +G GP G + + + L+ F ++S
Sbjct: 141 TGAAASATY-SAGRKGVGPAAVGSFAIPAPFTYRPRFERNGAYDYLAELDYAFDLIDRQS 199
Query: 126 GDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDW 185
+A F+ EPI G+I PDGY+ A++ C +L+I DE Q+G+ R+G M A
Sbjct: 200 SGNLAAFIAEPILSSGGIIELPDGYMAALKRKCEARGMLLILDEAQTGVGRTGTMFACQR 259
Query: 186 EEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHG------STFGGNPLASAVAI 239
+ V PD++ L K LG G +P++A++ I+ H +T +PL +AV +
Sbjct: 260 DGVTPDILTLSKTLGAG-LPLAAIVTSA----AIEERAHELGYLFYTTHVSDPLPAAVGL 314
Query: 240 ASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDK---TALP 296
LDV++ + L R+ +G+ LR+ L + ++F + + +VRGRGL VE K T P
Sbjct: 315 RVLDVVQRDGLVARANVMGDRLRRGLLDLMERF-DCIGDVRGRGLLLGVEIVKDRRTKEP 373
Query: 297 VSAYDI-----CLKMK-ERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVLE 346
C+ + I+ P + R+ PPL++S +E+ G L +E
Sbjct: 374 ADGLGAKITRECMNLGLSMNIVQLPGMGGVFRIAPPLTVSEDEIDLGLSLLGQAIE 429
>pdb|1M0N|A Chain A, Structure Of Dialkylglycine Decarboxylase Complexed With
1- Aminocyclopentanephosphonate
pdb|1M0O|A Chain A, Structure Of Dialkylglycine Decarboxylase Complexed With
1- Amino-1-Methylpropanephosphonate
pdb|1M0P|A Chain A, Structure Of Dialkylglycine Decarboxylase Complexed With
1- Amino-1-Phenylethanephosphonate
pdb|1M0Q|A Chain A, Structure Of Dialkylglycine Decarboxylase Complexed With
S- 1-Aminoethanephosphonate
pdb|1ZC9|A Chain A, The Crystal Structure Of Dialkylglycine Decarboxylase
Complex With Pyridoxamine 5-phosphate
pdb|1ZOB|A Chain A, Crystal Structure Of Dialkylglycine Decarboxylases Bound
With Calcium Ion
pdb|1ZOD|A Chain A, Crystal Structure Of Dialkylglycine Decarboxylase Bound
With Cesium Ion
pdb|1DKA|A Chain A, Dialkylglycine Decarboxylase Structure: Bifunctional
Active Site And Alkali Metal Binding Sites
pdb|2DKB|A Chain A, Dialkylglycine Decarboxylase Structure: Bifunctional
Active Site And Alkali Metal Binding Sites
Length = 433
Score = 125 bits (314), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 103/356 (28%), Positives = 169/356 (47%), Gaps = 50/356 (14%)
Query: 26 FAERLTSMF--GYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGR 83
A RL ++ G D L ++TGAE E A+++A+ V K+ I V +HG
Sbjct: 90 LATRLANITPPGLDRALLLSTGAESNEAAIRMAK---LVTGKYEI-----VGFAQSWHGM 141
Query: 84 TLAAISMSCDNEAIRGFGPLLPGHLKV--------------DFGDITALEKIF----KES 125
T AA S + + +G GP G + + + L+ F ++S
Sbjct: 142 TGAAASATY-SAGRKGVGPAAVGSFAIPAPFTYRPRFERNGAYDYLAELDYAFDLIDRQS 200
Query: 126 GDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDW 185
+A F+ EPI G+I PDGY+ A++ C +L+I DE Q+G+ R+G M A
Sbjct: 201 SGNLAAFIAEPILSSGGIIELPDGYMAALKRKCEARGMLLILDEAQTGVGRTGTMFACQR 260
Query: 186 EEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHG------STFGGNPLASAVAI 239
+ V PD++ L K LG G +P++A++ I+ H +T +PL +AV +
Sbjct: 261 DGVTPDILTLSKTLGAG-LPLAAIVTSA----AIEERAHELGYLFYTTHVSDPLPAAVGL 315
Query: 240 ASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDK---TALP 296
LDV++ + L R+ +G+ LR+ L + ++F + + +VRGRGL VE K T P
Sbjct: 316 RVLDVVQRDGLVARANVMGDRLRRGLLDLMERF-DCIGDVRGRGLLLGVEIVKDRRTKEP 374
Query: 297 VSAYDI-----CLKMK-ERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVLE 346
C+ + I+ P + R+ PPL++S +E+ G L +E
Sbjct: 375 ADGLGAKITRECMNLGLSMNIVQLPGMGGVFRIAPPLTVSEDEIDLGLSLLGQAIE 430
>pdb|1D7R|A Chain A, Crystal Structure Of The Complex Of 2,2-Dialkylglycine
Decarboxylase With 5pa
pdb|1D7S|A Chain A, Crystal Structure Of The Complex Of 2,2-Dialkylglycine
Decarboxylase With Dcs
pdb|1D7U|A Chain A, Crystal Structure Of The Complex Of 2,2-Dialkylglycine
Decarboxylase With Lcs
pdb|1D7V|A Chain A, Crystal Structure Of The Complex Of 2,2-Dialkylglycine
Decarboxylase With Nma
Length = 433
Score = 125 bits (314), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 103/356 (28%), Positives = 169/356 (47%), Gaps = 50/356 (14%)
Query: 26 FAERLTSMF--GYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGR 83
A RL ++ G D L ++TGAE E A+++A+ V K+ I V +HG
Sbjct: 90 LATRLANITPPGLDRALLLSTGAESNEAAIRMAK---LVTGKYEI-----VGFAQSWHGM 141
Query: 84 TLAAISMSCDNEAIRGFGPLLPGHLKV--------------DFGDITALEKIF----KES 125
T AA S + + +G GP G + + + L+ F ++S
Sbjct: 142 TGAAASATY-SAGRKGVGPAAVGSFAIPAPFTYRPRFERNGAYDYLAELDYAFDLIDRQS 200
Query: 126 GDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDW 185
+A F+ EPI G+I PDGY+ A++ C +L+I DE Q+G+ R+G M A
Sbjct: 201 SGNLAAFIAEPILSSGGIIELPDGYMAALKRKCEARGMLLILDEAQTGVGRTGTMFACQR 260
Query: 186 EEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHG------STFGGNPLASAVAI 239
+ V PD++ L K LG G +P++A++ I+ H +T +PL +AV +
Sbjct: 261 DGVTPDILTLSKTLGAG-LPLAAIVTSA----AIEERAHELGYLFYTTHVSDPLPAAVGL 315
Query: 240 ASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDK---TALP 296
LDV++ + L R+ +G+ LR+ L + ++F + + +VRGRGL VE K T P
Sbjct: 316 RVLDVVQRDGLVARANVMGDRLRRGLLDLMERF-DCIGDVRGRGLLLGVEIVKDRRTKEP 374
Query: 297 VSAYDI-----CLKMK-ERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVLE 346
C+ + I+ P + R+ PPL++S +E+ G L +E
Sbjct: 375 ADGLGAKITRECMNLGLSMNIVQLPGMGGVFRIAPPLTVSEDEIDLGLSLLGQAIE 430
>pdb|3NUI|A Chain A, Crystal Structure Of Omega-Transferase From Vibrio
Fluvialis Js17
pdb|3NUI|B Chain B, Crystal Structure Of Omega-Transferase From Vibrio
Fluvialis Js17
Length = 478
Score = 121 bits (303), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 107/391 (27%), Positives = 179/391 (45%), Gaps = 50/391 (12%)
Query: 1 MKALQEQAEKLTLSSRAFY---NDKFPVFAERLTSMFGYD--MVLPMNTGAEGVETALKL 55
+ A + Q E+ AF+ +D+ + +E+L + +D V N+G+E +T +K+
Sbjct: 83 IDAAKAQYERFP-GYHAFFGRMSDQTVMLSEKLVEVSPFDSGRVFYTNSGSEANDTMVKM 141
Query: 56 ARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVD---- 111
W + + I++ +HG T + SM+ FG LPG + +
Sbjct: 142 L--WFLHAAEGKPQKRKILTRWNAYHGVTAVSASMT-GKPYNSVFGLPLPGFVHLTCPHY 198
Query: 112 --FGDITALEKIF-------------KESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRD 156
+G+ E+ F +E D IAGF EP+ G GVI P GY +A+
Sbjct: 199 WRYGEEGETEEQFVARLARELEETIQREGADTIAGFFAEPVMGAGGVIPPAKGYFQAILP 258
Query: 157 LCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEV- 215
+ KY+I +I+DE+ G R+G + PD +I K L G P+ AV+ E+
Sbjct: 259 ILRKYDIPVISDEVICGFGRTGNTWGCVTYDFTPDAIISSKNLTAGFFPMGAVILGPELS 318
Query: 216 ------MLCIQPGEHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQ 269
+ I+ HG T G+P+ A+A+ ++DV+ +E LAE L + L I
Sbjct: 319 KRLETAIEAIEEFPHGFTASGHPVGCAIALKAIDVVMNEGLAENVRRLAPRFEERLKHIA 378
Query: 270 QQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKER--------GILAKPTHDTIV 321
++ PN + E RG G A+E K + +D L + ER G++ +P ++V
Sbjct: 379 ER-PN-IGEYRGIGFMWALEAVKDKASKTPFDGNLSVSERIANTCTDLGLICRPLGQSVV 436
Query: 322 RLTPPLSISSNELQEGSKALHDVLELDLPKM 352
L PP ++ ++ E + D LE L K+
Sbjct: 437 -LCPPFILTEAQMDE----MFDKLEKALDKV 462
>pdb|4A6R|A Chain A, Crystal Structure Of The Omega Transaminase From
Chromobacterium Violaceum In The Apo Form, Crystallised
From Polyacrylic Acid
pdb|4A6R|B Chain B, Crystal Structure Of The Omega Transaminase From
Chromobacterium Violaceum In The Apo Form, Crystallised
From Polyacrylic Acid
pdb|4A6T|A Chain A, Crystal Structure Of The Omega Transaminase From
Chromobacterium Violaceum In Complex With Plp
pdb|4A6T|B Chain B, Crystal Structure Of The Omega Transaminase From
Chromobacterium Violaceum In Complex With Plp
pdb|4A6T|C Chain C, Crystal Structure Of The Omega Transaminase From
Chromobacterium Violaceum In Complex With Plp
pdb|4A6T|D Chain D, Crystal Structure Of The Omega Transaminase From
Chromobacterium Violaceum In Complex With Plp
pdb|4A6U|A Chain A, Crystal Structure Of The Omega Transaminase From
Chromobacterium Violaceum In The Apo Form, Crystallised
From Peg 3350
pdb|4A6U|B Chain B, Crystal Structure Of The Omega Transaminase From
Chromobacterium Violaceum In The Apo Form, Crystallised
From Peg 3350
pdb|4A72|A Chain A, Crystal Structure Of The Omega Transaminase From
Chromobacterium Violaceum In A Mixture Of Apo And
Plp-Bound States
pdb|4A72|B Chain B, Crystal Structure Of The Omega Transaminase From
Chromobacterium Violaceum In A Mixture Of Apo And
Plp-Bound States
pdb|4A72|C Chain C, Crystal Structure Of The Omega Transaminase From
Chromobacterium Violaceum In A Mixture Of Apo And
Plp-Bound States
pdb|4A72|D Chain D, Crystal Structure Of The Omega Transaminase From
Chromobacterium Violaceum In A Mixture Of Apo And
Plp-Bound States
pdb|4AH3|A Chain A, Crystal Structure Of The Holo Omega-Transaminase From
Chromobacterium Violaceum
pdb|4AH3|B Chain B, Crystal Structure Of The Holo Omega-Transaminase From
Chromobacterium Violaceum
pdb|4AH3|C Chain C, Crystal Structure Of The Holo Omega-Transaminase From
Chromobacterium Violaceum
pdb|4AH3|D Chain D, Crystal Structure Of The Holo Omega-Transaminase From
Chromobacterium Violaceum
Length = 459
Score = 120 bits (301), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 99/371 (26%), Positives = 172/371 (46%), Gaps = 42/371 (11%)
Query: 2 KALQEQAEKLTLSSRAFYNDKFPVFAERLTSMF------GYDMVLPMNTGAEGVETALKL 55
+A + Q E+L + F+ P E L+S+ G+D V N+G+E V+T +++
Sbjct: 73 EAARRQMEELPFYN-TFFKTTHPAVVE-LSSLLAEVTPAGFDRVFYTNSGSESVDTMIRM 130
Query: 56 ARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVD---- 111
R++ V+ K ++ ++ +HG T+ S+ +PG ++
Sbjct: 131 VRRYWDVQGK--PEKKTLIGRWNGYHGSTIGGASLGGMKYMHEQGDLPIPGMAHIEQPWW 188
Query: 112 -----------FGDITAL---EKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDL 157
FG + A EKI + D++A F+ EPIQG GVI+PP Y + +
Sbjct: 189 YKHGKDMTPDEFGVVAARWLEEKILEIGADKVAAFVGEPIQGAGGVIVPPATYWPEIERI 248
Query: 158 CSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVML 217
C KY++L++ADE+ G R+G +PD+ K L G +P+ AV K V
Sbjct: 249 CRKYDVLLVADEVICGFGRTGEWFGHQHFGFQPDLFTAAKGLSSGYLPIGAVFVGKRVAE 308
Query: 218 CIQPG---EHGSTFGGNPLASAVAIASLDVIRDEKLAER-SAHLGEELRQHLFKIQQQFP 273
+ G HG T+ G+P+ +AVA A++ +RDE + +R +G +++ + +F
Sbjct: 309 GLIAGGDFNHGFTYSGHPVCAAVAHANVAALRDEGIVQRVKDDIGPYMQKRWRETFSRF- 367
Query: 274 NYVKEVRGRGLFNAVEFDKTALPVSAY-------DICLKMKER-GILAKPTHDTIVRLTP 325
+V +VRG G+ A K + +C + R ++ + D IV P
Sbjct: 368 EHVDDVRGVGMVQAFTLVKNKAKRELFPDFGEIGTLCRDIFFRNNLIMRACGDHIVS-AP 426
Query: 326 PLSISSNELQE 336
PL ++ E+ E
Sbjct: 427 PLVMTRAEVDE 437
>pdb|1QJ3|A Chain A, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase
In Complex With 7-Keto-8-Aminopelargonic Acid
pdb|1QJ3|B Chain B, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase
In Complex With 7-Keto-8-Aminopelargonic Acid
pdb|1QJ5|A Chain A, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase
pdb|1QJ5|B Chain B, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase
pdb|1MLY|A Chain A, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase
In Complex With The Cis Isomer Of Amiclenomycin
pdb|1MLY|B Chain B, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase
In Complex With The Cis Isomer Of Amiclenomycin
pdb|1MLZ|A Chain A, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase
In Complex With The Trans-Isomer Of Amiclenomycin.
pdb|1MLZ|B Chain B, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase
In Complex With The Trans-Isomer Of Amiclenomycin
Length = 429
Score = 118 bits (296), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 100/326 (30%), Positives = 160/326 (49%), Gaps = 27/326 (8%)
Query: 39 VLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISM-SCDNEAI 97
V ++G+ VE A+K+A + Y + K + + G +HG T A+S+ DN
Sbjct: 106 VFLADSGSVAVEVAMKMALQ--YWQAKGEARQRFLTFRNG-YHGDTFGAMSVCDPDNSMH 162
Query: 98 RGFGPLLPGHL-----------KVDFGDITALEKIFKESGDQIAGFLFEPI-QGEAGVII 145
+ LP +L + D D+ ++ +IA + EPI QG G+ +
Sbjct: 163 SLWKGYLPENLFAPAPQSRMDGEWDERDMVGFARLMAAHRHEIAAVIIEPIVQGAGGMRM 222
Query: 146 PPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIP 205
+LK +R +C + IL+IADEI +G R+G++ A + E+ PD++ LGKAL GG +
Sbjct: 223 YHPEWLKRIRKICDREGILLIADEIATGFGRTGKLFACEHAEIAPDILCLGKALTGGTMT 282
Query: 206 VSAVLADKEVMLCIQPGE-----HGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEE 260
+SA L +EV I GE HG TF GNPLA A A ASL ++ ++ A + +
Sbjct: 283 LSATLTTREVAETISNGEAGCFMHGPTFMGNPLACAAANASLAILESGDWQQQVADIEVQ 342
Query: 261 LRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTHDTI 320
LR+ L + V +VR G VE T PV+ + E+G+ +P +
Sbjct: 343 LREQLAPARDA--EMVADVRVLGAIGVVE---TTHPVNMAALQKFFVEQGVWIRP-FGKL 396
Query: 321 VRLTPPLSISSNELQEGSKALHDVLE 346
+ L PP I +LQ + A++ ++
Sbjct: 397 IYLMPPYIILPQQLQRLTAAVNRAVQ 422
>pdb|3TFT|A Chain A, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase
(Bioa) From Mycobacterium Tuberculosis, Pre-Reaction
Complex With A 3,6- Dihydropyrid-2-One Heterocycle
Inhibitor
pdb|3TFT|B Chain B, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase
(Bioa) From Mycobacterium Tuberculosis, Pre-Reaction
Complex With A 3,6- Dihydropyrid-2-One Heterocycle
Inhibitor
pdb|3TFU|A Chain A, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase
(Bioa) From Mycobacterium Tuberculosis, Post-Reaction
Complex With A 3,6- Dihydropyrid-2-One Heterocycle
Inhibitor
pdb|3TFU|B Chain B, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase
(Bioa) From Mycobacterium Tuberculosis, Post-Reaction
Complex With A 3,6- Dihydropyrid-2-One Heterocycle
Inhibitor
Length = 457
Score = 118 bits (296), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 96/330 (29%), Positives = 156/330 (47%), Gaps = 28/330 (8%)
Query: 35 GYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDN 94
G D V ++G+ VE A K+A + Y + + + +++ G +HG T A+S+ CD
Sbjct: 134 GLDTVFFSDSGSVSVEVAAKMALQ--YWRGRGLPGKRRLMTWRGGYHGDTFLAMSI-CDP 190
Query: 95 E-----------AIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPI-QGEAG 142
A + F P +P D A E + ++A + EP+ QG G
Sbjct: 191 HGGMHSLWTDVLAAQVFAPQVP--RDYDPAYSAAFEAQLAQHAGELAAVVVEPVVQGAGG 248
Query: 143 VIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGG 202
+ YL +RD+C +Y +L+I DEI +G R+G + A+D V PD++ +GKAL GG
Sbjct: 249 MRFHDPRYLHDLRDICRRYEVLLIFDEIATGFGRTGALFAADHAGVSPDIMCVGKALTGG 308
Query: 203 VIPVSAVLADKEVMLCIQPGE-----HGSTFGGNPLASAVAIASLDVIRDEKLAERSAHL 257
+ ++A L +V I G HG TF NPLA AV++AS++++ + R L
Sbjct: 309 YLSLAATLCTADVAHTISAGAAGALMHGPTFMANPLACAVSVASVELLLGQDWRTRITEL 368
Query: 258 GEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTH 317
L L + P V +VR G +E D+ PV +RG+ +P
Sbjct: 369 AAGLTAGL-DTARALPA-VTDVRVCGAIGVIECDR---PVDLAVATPAALDRGVWLRPFR 423
Query: 318 DTIVRLTPPLSISSNELQEGSKALHDVLEL 347
+ +V PP + E+ + + A+ +V L
Sbjct: 424 N-LVYAMPPYICTPAEITQITSAMVEVARL 452
>pdb|4E3R|A Chain A, Plp-Bound Aminotransferase Mutant Crystal Structure From
Vibrio Fluvialis
pdb|4E3R|B Chain B, Plp-Bound Aminotransferase Mutant Crystal Structure From
Vibrio Fluvialis
pdb|4E3R|C Chain C, Plp-Bound Aminotransferase Mutant Crystal Structure From
Vibrio Fluvialis
pdb|4E3R|D Chain D, Plp-Bound Aminotransferase Mutant Crystal Structure From
Vibrio Fluvialis
Length = 473
Score = 118 bits (295), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 107/392 (27%), Positives = 177/392 (45%), Gaps = 52/392 (13%)
Query: 1 MKALQEQAEKLTLSSRAF--YNDKFPVFAERLTSMFGYD--MVLPMNTGAEGVETALKLA 56
+ A + Q E+ AF +D+ + +E+L + +D V N+G+E +T +K+
Sbjct: 89 IDAAKAQYERFPGYHAAFGKMSDQTVMLSEKLVEVSPFDSGRVFYTNSGSEANDTMVKML 148
Query: 57 RKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSC--DNEAIRGFGPLLPGHLKVD--- 111
W + + I++ +HG T + SM+ N FG LPG + +
Sbjct: 149 --WFLHAAEGKPQKRKILTRWNAYHGATAVSASMTGFPYNSV---FGLPLPGFVHLTCPH 203
Query: 112 ---FGDITALEKIF-------------KESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVR 155
+G+ E+ F +E D IAGF EP+ G GVI P GY +A+
Sbjct: 204 YWRYGEEGETEEQFVARLARELEETIQREGADTIAGFFAEPVMGAGGVIPPAKGYFQAIL 263
Query: 156 DLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEV 215
+ KY+I +I+DE+ G R+G + PD +I L G P+ AV+ E+
Sbjct: 264 PILRKYDIPVISDEVVCGFGRTGNTWGCVTYDFTPDAIISSXNLTAGFFPMGAVILGPEL 323
Query: 216 -------MLCIQPGEHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKI 268
+ I+ HG T G+P+ A+A+ ++DV+ +E LAE L + L I
Sbjct: 324 SKRLETAIEAIEEFPHGFTASGHPVGCAIALKAIDVVMNEGLAENVRRLAPRFEERLKHI 383
Query: 269 QQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKER--------GILAKPTHDTI 320
++ PN + E RG G A+E K + +D L + ER G++ P ++
Sbjct: 384 AER-PN-IGEYRGIGFMWALEAVKDKASKTPFDGNLSVSERIANTCTDLGLICFPLGQSV 441
Query: 321 VRLTPPLSISSNELQEGSKALHDVLELDLPKM 352
V L PP ++ ++ E + D LE L K+
Sbjct: 442 V-LCPPFILTEAQMDE----MFDKLEKALDKV 468
>pdb|4GRX|A Chain A, Structure Of An Omega-Aminotransferase From Paracoccus
Denitrificans
pdb|4GRX|B Chain B, Structure Of An Omega-Aminotransferase From Paracoccus
Denitrificans
pdb|4GRX|C Chain C, Structure Of An Omega-Aminotransferase From Paracoccus
Denitrificans
pdb|4GRX|D Chain D, Structure Of An Omega-Aminotransferase From Paracoccus
Denitrificans
Length = 465
Score = 118 bits (295), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 99/363 (27%), Positives = 164/363 (45%), Gaps = 42/363 (11%)
Query: 20 NDKFPVFAERLTSMFGYD--MVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCC 77
+D+ + +E+L + +D V N+G+E +T +K+ W + + I++
Sbjct: 102 SDQTVMLSEKLVEVSPFDNGRVFYTNSGSEANDTMVKML--WFLHAAEGKPQKRKILTRW 159
Query: 78 GCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVD------FGDITALEKIF--------- 122
+HG T + SM+ FG LPG + + +G+ E F
Sbjct: 160 NAYHGVTAVSASMT-GKPYNSVFGLPLPGFIHLTCPHYWRYGEEGETEAQFVARLARELE 218
Query: 123 ----KESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSG 178
+E D IAGF EP+ G GVI P GY +A+ + KY+I MI+DE+ G R+G
Sbjct: 219 DTITREGADTIAGFFAEPVMGAGGVIPPAKGYFQAILPILRKYDIPMISDEVICGFGRTG 278
Query: 179 RMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEV-------MLCIQPGEHGSTFGGN 231
+ PD +I L G P+ AV+ ++ + I+ HG T G+
Sbjct: 279 NTWGCLTYDFMPDAIISSXNLTAGFFPMGAVILGPDLAKRVEAAVEAIEEFPHGFTASGH 338
Query: 232 PLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFD 291
P+ A+A+ ++DV+ +E LAE L L +I + PN + E RG G A+E
Sbjct: 339 PVGCAIALKAIDVVMNEGLAENVRRLAPRFEAGLKRIADR-PN-IGEYRGIGFMWALEAV 396
Query: 292 KTALPVSAYDICLKMKER--------GILAKPTHDTIVRLTPPLSISSNELQEGSKALHD 343
K + +D L + ER G++ +P +IV L PP ++ ++ E + L
Sbjct: 397 KDKPTKTPFDANLSVSERIANTCTDLGLICRPLGQSIV-LCPPFILTEAQMDEMFEKLEK 455
Query: 344 VLE 346
L+
Sbjct: 456 ALD 458
>pdb|1S09|A Chain A, Crystal Structure Of The Y144f Mutant Of 7,8-
Diaminopelargonic Acid Synthase
pdb|1S09|B Chain B, Crystal Structure Of The Y144f Mutant Of 7,8-
Diaminopelargonic Acid Synthase
Length = 429
Score = 117 bits (293), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 100/326 (30%), Positives = 159/326 (48%), Gaps = 27/326 (8%)
Query: 39 VLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISM-SCDNEAI 97
V ++G+ VE A+K+A + Y + K + + G FHG T A+S+ DN
Sbjct: 106 VFLADSGSVAVEVAMKMALQ--YWQAKGEARQRFLTFRNG-FHGDTFGAMSVCDPDNSMH 162
Query: 98 RGFGPLLPGHL-----------KVDFGDITALEKIFKESGDQIAGFLFEPI-QGEAGVII 145
+ LP +L + D D+ ++ +IA + EPI QG G+ +
Sbjct: 163 SLWKGYLPENLFAPAPQSRMDGEWDERDMVGFARLMAAHRHEIAAVIIEPIVQGAGGMRM 222
Query: 146 PPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIP 205
+LK +R +C + IL+IADEI +G R+G++ A + E+ PD++ LG AL GG +
Sbjct: 223 YHPEWLKRIRKICDREGILLIADEIATGFGRTGKLFACEHAEIAPDILCLGXALTGGTMT 282
Query: 206 VSAVLADKEVMLCIQPGE-----HGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEE 260
+SA L +EV I GE HG TF GNPLA A A ASL ++ ++ A + +
Sbjct: 283 LSATLTTREVAETISNGEAGCFMHGPTFMGNPLACAAANASLAILESGDWQQQVADIEVQ 342
Query: 261 LRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTHDTI 320
LR+ L + V +VR G VE T PV+ + E+G+ +P +
Sbjct: 343 LREQLAPARDA--EMVADVRVLGAIGVVE---TTHPVNMAALQKFFVEQGVWIRP-FGKL 396
Query: 321 VRLTPPLSISSNELQEGSKALHDVLE 346
+ L PP I +LQ + A++ ++
Sbjct: 397 IYLMPPYIILPQQLQRLTAAVNRAVQ 422
>pdb|1DTY|A Chain A, Crystal Structure Of
Adenosylmethionine-8-Amino-7-Oxonanoate Aminotransferase
With Pyridoxal Phosphate Cofactor.
pdb|1DTY|B Chain B, Crystal Structure Of
Adenosylmethionine-8-Amino-7-Oxonanoate Aminotransferase
With Pyridoxal Phosphate Cofactor
Length = 429
Score = 117 bits (293), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 100/326 (30%), Positives = 159/326 (48%), Gaps = 27/326 (8%)
Query: 39 VLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISM-SCDNEAI 97
V ++G+ VE A+K+A + Y K + + G +HG T A+S+ DN
Sbjct: 106 VFLADSGSVAVEVAMKMALQ--YWDAKGEARDRFLTFRNG-YHGDTFGAMSVCDPDNSMH 162
Query: 98 RGFGPLLPGHL-----------KVDFGDITALEKIFKESGDQIAGFLFEPI-QGEAGVII 145
+ LP +L + D D+ ++ +IA + EPI QG G+ +
Sbjct: 163 SLWKGYLPENLFAPAPQSRMDGEWDERDMVGFARLMAAHRHEIAAVIIEPIVQGAGGMRM 222
Query: 146 PPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIP 205
+LK +R +C + IL+IADEI +G R+G++ A + E+ PD++ LGKAL GG +
Sbjct: 223 YHPEWLKRIRKICDREGILLIADEIATGFGRTGKLFACEHAEIAPDILCLGKALTGGTMT 282
Query: 206 VSAVLADKEVMLCIQPGE-----HGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEE 260
+SA L +EV I GE HG TF GNPLA A A ASL ++ ++ A + +
Sbjct: 283 LSATLTTREVAETISDGEAGCFMHGPTFMGNPLACAAANASLAILESGDWQQQVADIEVQ 342
Query: 261 LRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTHDTI 320
LR+ L + V +VR G VE T PV+ + E+G+ +P +
Sbjct: 343 LREQLAPARDA--EMVADVRVLGAIGVVE---TTHPVNMAALQKFFVEQGVWIRP-FGKL 396
Query: 321 VRLTPPLSISSNELQEGSKALHDVLE 346
+ L PP I +LQ + A++ ++
Sbjct: 397 IYLMPPYIILPQQLQRLTAAVNRAVQ 422
>pdb|1MGV|A Chain A, Crystal Structure Of The R391a Mutant Of
7,8-Diaminopelargonic Acid Synthase
pdb|1MGV|B Chain B, Crystal Structure Of The R391a Mutant Of
7,8-Diaminopelargonic Acid Synthase
Length = 429
Score = 117 bits (293), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 100/326 (30%), Positives = 159/326 (48%), Gaps = 27/326 (8%)
Query: 39 VLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISM-SCDNEAI 97
V ++G+ VE A+K+A + Y + K + + G +HG T A+S+ DN
Sbjct: 106 VFLADSGSVAVEVAMKMALQ--YWQAKGEARQRFLTFRNG-YHGDTFGAMSVCDPDNSMH 162
Query: 98 RGFGPLLPGHL-----------KVDFGDITALEKIFKESGDQIAGFLFEPI-QGEAGVII 145
+ LP +L + D D+ ++ +IA + EPI QG G+ +
Sbjct: 163 SLWKGYLPENLFAPAPQSRMDGEWDERDMVGFARLMAAHRHEIAAVIIEPIVQGAGGMRM 222
Query: 146 PPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIP 205
+LK +R +C + IL+IADEI +G R+G++ A + E+ PD++ LGKAL GG +
Sbjct: 223 YHPEWLKRIRKICDREGILLIADEIATGFGRTGKLFACEHAEIAPDILCLGKALTGGTMT 282
Query: 206 VSAVLADKEVMLCIQPGE-----HGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEE 260
+SA L +EV I GE HG TF GNPLA A A ASL ++ ++ A + +
Sbjct: 283 LSATLTTREVAETISNGEAGCFMHGPTFMGNPLACAAANASLAILESGDWQQQVADIEVQ 342
Query: 261 LRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTHDTI 320
LR+ L + V +VR G VE T PV+ + E+G+ P +
Sbjct: 343 LREQLAPARDA--EMVADVRVLGAIGVVE---TTHPVNMAALQKFFVEQGVWIAP-FGKL 396
Query: 321 VRLTPPLSISSNELQEGSKALHDVLE 346
+ L PP I +LQ + A++ ++
Sbjct: 397 IYLMPPYIILPQQLQRLTAAVNRAVQ 422
>pdb|3I4J|A Chain A, Crystal Structure Of Aminotransferase, Class Iii From
Deinococcus Radiodurans
pdb|3I4J|B Chain B, Crystal Structure Of Aminotransferase, Class Iii From
Deinococcus Radiodurans
pdb|3I4J|C Chain C, Crystal Structure Of Aminotransferase, Class Iii From
Deinococcus Radiodurans
pdb|3I4J|D Chain D, Crystal Structure Of Aminotransferase, Class Iii From
Deinococcus Radiodurans
Length = 430
Score = 117 bits (292), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 103/365 (28%), Positives = 170/365 (46%), Gaps = 38/365 (10%)
Query: 4 LQEQAEKLT-LSSRAFYNDKFPVFAERLTSMFGYDMV--LPMNTGAEGVETALKLARKWG 60
+ QA +L + F +D +A RL G ++ G+E E+A+KLAR+
Sbjct: 54 MAAQAARLPFVHGSQFSSDVLEEYAGRLARFVGLPTFRFWAVSGGSEATESAVKLARQ-- 111
Query: 61 YVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLL----------PGHLKV 110
Y ++ +++ +HG +L +++ S + PL+ P +
Sbjct: 112 YHVERGEPGRFKVITRVPSYHGASLGSLAASGMGARRELYTPLMRPEAWPKLPKPDPARN 171
Query: 111 DFGDITALEKIFKESG-DQIAGFLFEPIQGEA-GVIIPPDGYLKAVRDLCSKYNILMIAD 168
D L + + G + +A F+ EP+ G + + P GY + VRD+C + I+ IAD
Sbjct: 172 GAEDAEGLRALLEREGPETVAAFMAEPVVGASDAALAPAPGYYERVRDICDEAGIIFIAD 231
Query: 169 EIQSGLARSGRMLA-SDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGE---- 223
E+ SG+ R G LA S W V PD+ +LGK L G P++ +LA +V + G
Sbjct: 232 EVMSGMGRCGSPLALSRWSGVTPDIAVLGKGLAAGYAPLAGLLAAPQVYETVMGGSGAFM 291
Query: 224 HGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRG 283
HG T+ G+P++ A ++ LD++ E L + G +L L +Q +FP + +VRG G
Sbjct: 292 HGFTYAGHPVSVAAGLSVLDIVEREDLTGAAKERGAQLLAGLQALQARFPQMM-QVRGTG 350
Query: 284 LFNAVEFDKTA------LPVSAYDICLKMKERGILAKPTH--------DTIVRLTPPLSI 329
L V A P A I +RG++ P D ++ L PPLSI
Sbjct: 351 LLLGVVLGDLATGQAFETPGIASRIGAAALKRGLITYPGSGAEPNGRGDHLL-LGPPLSI 409
Query: 330 SSNEL 334
++ E+
Sbjct: 410 TAAEV 414
>pdb|4E3Q|A Chain A, Pmp-Bound Form Of Aminotransferase Crystal Structure From
Vibrio Fluvialis
pdb|4E3Q|B Chain B, Pmp-Bound Form Of Aminotransferase Crystal Structure From
Vibrio Fluvialis
pdb|4E3Q|C Chain C, Pmp-Bound Form Of Aminotransferase Crystal Structure From
Vibrio Fluvialis
pdb|4E3Q|D Chain D, Pmp-Bound Form Of Aminotransferase Crystal Structure From
Vibrio Fluvialis
Length = 473
Score = 117 bits (292), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 105/386 (27%), Positives = 172/386 (44%), Gaps = 48/386 (12%)
Query: 1 MKALQEQAEKLTLSSRAFY---NDKFPVFAERLTSMFGYD--MVLPMNTGAEGVETALKL 55
+ A + Q E+ AF+ +D+ +E+L + +D V N+G+E +T +K
Sbjct: 89 IDAAKAQYERFP-GYHAFFGRXSDQTVXLSEKLVEVSPFDSGRVFYTNSGSEANDTXVKX 147
Query: 56 ARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRG-FGPLLPGHLKVD--- 111
W + + I++ +HG T A+S S + FG LPG + +
Sbjct: 148 L--WFLHAAEGKPQKRKILTRWNAYHGVT--AVSASXTGKPYNSVFGLPLPGFVHLTCPH 203
Query: 112 ---FGDITALEKIF-------------KESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVR 155
+G+ E+ F +E D IAGF EP+ G GVI P GY +A+
Sbjct: 204 YWRYGEEGETEEQFVARLARELEETIQREGADTIAGFFAEPVXGAGGVIPPAKGYFQAIL 263
Query: 156 DLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEV 215
+ KY+I +I+DE+ G R+G + PD +I K L G P AV+ E+
Sbjct: 264 PILRKYDIPVISDEVICGFGRTGNTWGCVTYDFTPDAIISSKNLTAGFFPXGAVILGPEL 323
Query: 216 -------MLCIQPGEHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKI 268
+ I+ HG T G+P+ A+A+ ++DV+ +E LAE L + L I
Sbjct: 324 SKRLETAIEAIEEFPHGFTASGHPVGCAIALKAIDVVXNEGLAENVRRLAPRFEERLKHI 383
Query: 269 QQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKER--------GILAKPTHDTI 320
++ PN + E RG G A+E K + +D L + ER G++ +P ++
Sbjct: 384 AER-PN-IGEYRGIGFXWALEAVKDKASKTPFDGNLSVSERIANTCTDLGLICRPLGQSV 441
Query: 321 VRLTPPLSISSNELQEGSKALHDVLE 346
V L PP ++ + E L L+
Sbjct: 442 V-LCPPFILTEAQXDEXFDKLEKALD 466
>pdb|1S08|A Chain A, Crystal Structure Of The D147n Mutant Of 7,8-
Diaminopelargonic Acid Synthase
pdb|1S08|B Chain B, Crystal Structure Of The D147n Mutant Of 7,8-
Diaminopelargonic Acid Synthase
Length = 429
Score = 117 bits (292), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 99/326 (30%), Positives = 159/326 (48%), Gaps = 27/326 (8%)
Query: 39 VLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISM-SCDNEAI 97
V ++G+ VE A+K+A + Y + K + + G +HG T A+S+ DN
Sbjct: 106 VFLADSGSVAVEVAMKMALQ--YWQAKGEARQRFLTFRNG-YHGNTFGAMSVCDPDNSMH 162
Query: 98 RGFGPLLPGHL-----------KVDFGDITALEKIFKESGDQIAGFLFEPI-QGEAGVII 145
+ LP +L + D D+ ++ +IA + EPI QG G+ +
Sbjct: 163 SLWKGYLPENLFAPAPQSRMDGEWDERDMVGFARLMAAHRHEIAAVIIEPIVQGAGGMRM 222
Query: 146 PPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIP 205
+LK +R +C + IL+IADEI +G R+G++ A + E+ PD++ LG AL GG +
Sbjct: 223 YHPEWLKRIRKICDREGILLIADEIATGFGRTGKLFACEHAEIAPDILCLGXALTGGTMT 282
Query: 206 VSAVLADKEVMLCIQPGE-----HGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEE 260
+SA L +EV I GE HG TF GNPLA A A ASL ++ ++ A + +
Sbjct: 283 LSATLTTREVAETISNGEAGCFMHGPTFMGNPLACAAANASLAILESGDWQQQVADIEVQ 342
Query: 261 LRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTHDTI 320
LR+ L + V +VR G VE T PV+ + E+G+ +P +
Sbjct: 343 LREQLAPARDA--EMVADVRVLGAIGVVE---TTHPVNMAALQKFFVEQGVWIRP-FGKL 396
Query: 321 VRLTPPLSISSNELQEGSKALHDVLE 346
+ L PP I +LQ + A++ ++
Sbjct: 397 IYLMPPYIILPQQLQRLTAAVNRAVQ 422
>pdb|1S0A|A Chain A, Crystal Structure Of The Y17f Mutant Of 7,8-
Diaminopelargonic Acid Synthase
pdb|1S0A|B Chain B, Crystal Structure Of The Y17f Mutant Of 7,8-
Diaminopelargonic Acid Synthase
Length = 429
Score = 116 bits (290), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 99/326 (30%), Positives = 159/326 (48%), Gaps = 27/326 (8%)
Query: 39 VLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISM-SCDNEAI 97
V ++G+ VE A+K+A + Y + K + + G +HG T A+S+ DN
Sbjct: 106 VFLADSGSVAVEVAMKMALQ--YWQAKGEARQRFLTFRNG-YHGDTFGAMSVCDPDNSMH 162
Query: 98 RGFGPLLPGHL-----------KVDFGDITALEKIFKESGDQIAGFLFEPI-QGEAGVII 145
+ LP +L + D D+ ++ +IA + EPI QG G+ +
Sbjct: 163 SLWKGYLPENLFAPAPQSRMDGEWDERDMVGFARLMAAHRHEIAAVIIEPIVQGAGGMRM 222
Query: 146 PPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIP 205
+LK +R +C + IL+IADEI +G R+G++ A + E+ PD++ LG AL GG +
Sbjct: 223 YHPEWLKRIRKICDREGILLIADEIATGFGRTGKLFACEHAEIAPDILCLGXALTGGTMT 282
Query: 206 VSAVLADKEVMLCIQPGE-----HGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEE 260
+SA L +EV I GE HG TF GNPLA A A ASL ++ ++ A + +
Sbjct: 283 LSATLTTREVAETISNGEAGCFMHGPTFMGNPLACAAANASLAILESGDWQQQVADIEVQ 342
Query: 261 LRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTHDTI 320
LR+ L + V +VR G VE T PV+ + E+G+ +P +
Sbjct: 343 LREQLAPARDA--EMVADVRVLGAIGVVE---TTHPVNMAALQKFFVEQGVWIRP-FGKL 396
Query: 321 VRLTPPLSISSNELQEGSKALHDVLE 346
+ L PP I +LQ + A++ ++
Sbjct: 397 IYLMPPYIILPQQLQRLTAAVNRAVQ 422
>pdb|3LV2|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis
7,8-Diaminopelargonic Acid Synthase In Complex With
Substrate Analog Sinefungin
pdb|3LV2|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis
7,8-Diaminopelargonic Acid Synthase In Complex With
Substrate Analog Sinefungin
Length = 462
Score = 115 bits (289), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 95/330 (28%), Positives = 156/330 (47%), Gaps = 28/330 (8%)
Query: 35 GYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDN 94
G D V ++G+ VE A K+A + Y + + + +++ G +HG T A+S+ CD
Sbjct: 139 GLDTVFFSDSGSVSVEVAAKMALQ--YWRGRGLPGKRRLMTWRGGYHGDTFLAMSI-CDP 195
Query: 95 E-----------AIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPI-QGEAG 142
A + F P +P D A E + ++A + EP+ QG G
Sbjct: 196 HGGMHSLWTDVLAAQVFAPQVP--RDYDPAYSAAFEAQLAQHAGELAAVVVEPVVQGAGG 253
Query: 143 VIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGG 202
+ YL +RD+C +Y +L+I DEI +G R+G + A+D V PD++ +GKAL GG
Sbjct: 254 MRFHDPRYLHDLRDICRRYEVLLIFDEIATGFGRTGALFAADHAGVSPDIMCVGKALTGG 313
Query: 203 VIPVSAVLADKEVMLCIQPGEHGS-----TFGGNPLASAVAIASLDVIRDEKLAERSAHL 257
+ ++A L +V I G G+ TF NPLA AV++AS++++ + R L
Sbjct: 314 YLSLAATLCTADVAHTISAGAAGALMRGPTFMANPLACAVSVASVELLLGQDWRTRITEL 373
Query: 258 GEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTH 317
L L + P V +VR G +E D+ PV +RG+ +P
Sbjct: 374 AAGLTAGL-DTARALPA-VTDVRVCGAIGVIECDR---PVDLAVATPAALDRGVWLRPFR 428
Query: 318 DTIVRLTPPLSISSNELQEGSKALHDVLEL 347
+ +V PP + E+ + + A+ +V L
Sbjct: 429 N-LVYAMPPYICTPAEITQITSAMVEVARL 457
>pdb|1S07|A Chain A, Crystal Structure Of The R253a Mutant Of
7,8-Diaminopelargonic Acid Synthase
pdb|1S07|B Chain B, Crystal Structure Of The R253a Mutant Of
7,8-Diaminopelargonic Acid Synthase
Length = 429
Score = 115 bits (289), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 99/326 (30%), Positives = 159/326 (48%), Gaps = 27/326 (8%)
Query: 39 VLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISM-SCDNEAI 97
V ++G+ VE A+K+A + Y + K + + G +HG T A+S+ DN
Sbjct: 106 VFLADSGSVAVEVAMKMALQ--YWQAKGEARQRFLTFRNG-YHGDTFGAMSVCDPDNSMH 162
Query: 98 RGFGPLLPGHL-----------KVDFGDITALEKIFKESGDQIAGFLFEPI-QGEAGVII 145
+ LP +L + D D+ ++ +IA + EPI QG G+ +
Sbjct: 163 SLWKGYLPENLFAPAPQSRMDGEWDERDMVGFARLMAAHRHEIAAVIIEPIVQGAGGMRM 222
Query: 146 PPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIP 205
+LK +R +C + IL+IADEI +G +G++ A + E+ PD++ LGKAL GG +
Sbjct: 223 YHPEWLKRIRKICDREGILLIADEIATGFGATGKLFACEHAEIAPDILCLGKALTGGTMT 282
Query: 206 VSAVLADKEVMLCIQPGE-----HGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEE 260
+SA L +EV I GE HG TF GNPLA A A ASL ++ ++ A + +
Sbjct: 283 LSATLTTREVAETISNGEAGCFMHGPTFMGNPLACAAANASLAILESGDWQQQVADIEVQ 342
Query: 261 LRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTHDTI 320
LR+ L + V +VR G VE T PV+ + E+G+ +P +
Sbjct: 343 LREQLAPARDA--EMVADVRVLGAIGVVE---TTHPVNMAALQKFFVEQGVWIRP-FGKL 396
Query: 321 VRLTPPLSISSNELQEGSKALHDVLE 346
+ L PP I +LQ + A++ ++
Sbjct: 397 IYLMPPYIILPQQLQRLTAAVNRAVQ 422
>pdb|3BV0|A Chain A, Crystal Structure Of Plp Bound 7,8-Diaminopelargonic Acid
Synthase In Mycobacterium Tuberculosis
pdb|3BV0|B Chain B, Crystal Structure Of Plp Bound 7,8-Diaminopelargonic Acid
Synthase In Mycobacterium Tuberculosis
Length = 437
Score = 115 bits (288), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 95/330 (28%), Positives = 156/330 (47%), Gaps = 28/330 (8%)
Query: 35 GYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDN 94
G D V ++G+ VE A K+A + Y + + + +++ G +HG T A+S+ CD
Sbjct: 114 GLDTVFFSDSGSVSVEVAAKMALQ--YWRGRGLPGKRRLMTWRGGYHGDTFLAMSI-CDP 170
Query: 95 E-----------AIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPI-QGEAG 142
A + F P +P D A E + ++A + EP+ QG G
Sbjct: 171 HGGMHSLWTDVLAAQVFAPQVP--RDYDPAYSAAFEAQLAQHAGELAAVVVEPVVQGAGG 228
Query: 143 VIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGG 202
+ YL +RD+C +Y +L+I DEI +G R+G + A+D V PD++ +GKAL GG
Sbjct: 229 MRFHDPRYLHDLRDICRRYEVLLIFDEIATGFGRTGALFAADHAGVSPDIMCVGKALTGG 288
Query: 203 VIPVSAVLADKEVMLCIQPGEHGS-----TFGGNPLASAVAIASLDVIRDEKLAERSAHL 257
+ ++A L +V I G G+ TF NPLA AV++AS++++ + R L
Sbjct: 289 YLSLAATLCTADVAHTISAGAAGALMRGPTFMANPLACAVSVASVELLLGQDWRTRITEL 348
Query: 258 GEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTH 317
L L + P V +VR G +E D+ PV +RG+ +P
Sbjct: 349 AAGLTAGL-DTARALPA-VTDVRVCGAIGVIECDR---PVDLAVATPAALDRGVWLRPFR 403
Query: 318 DTIVRLTPPLSISSNELQEGSKALHDVLEL 347
+ +V PP + E+ + + A+ +V L
Sbjct: 404 N-LVYAMPPYICTPAEITQITSAMVEVARL 432
>pdb|1S06|A Chain A, Crystal Structure Of The R253k Mutant Of 7,8-
Diaminopelargonic Acid Synthase
pdb|1S06|B Chain B, Crystal Structure Of The R253k Mutant Of 7,8-
Diaminopelargonic Acid Synthase
Length = 429
Score = 115 bits (287), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 98/326 (30%), Positives = 159/326 (48%), Gaps = 27/326 (8%)
Query: 39 VLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISM-SCDNEAI 97
V ++G+ VE A+K+A + Y + K + + G +HG T A+S+ DN
Sbjct: 106 VFLADSGSVAVEVAMKMALQ--YWQAKGEARQRFLTFRNG-YHGDTFGAMSVCDPDNSMH 162
Query: 98 RGFGPLLPGHL-----------KVDFGDITALEKIFKESGDQIAGFLFEPI-QGEAGVII 145
+ LP +L + D D+ ++ +IA + EPI QG G+ +
Sbjct: 163 SLWKGYLPENLFAPAPQSRMDGEWDERDMVGFARLMAAHRHEIAAVIIEPIVQGAGGMRM 222
Query: 146 PPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIP 205
+LK +R +C + IL+IADEI +G ++G++ A + E+ PD++ LG AL GG +
Sbjct: 223 YHPEWLKRIRKICDREGILLIADEIATGFGKTGKLFACEHAEIAPDILCLGXALTGGTMT 282
Query: 206 VSAVLADKEVMLCIQPGE-----HGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEE 260
+SA L +EV I GE HG TF GNPLA A A ASL ++ ++ A + +
Sbjct: 283 LSATLTTREVAETISNGEAGCFMHGPTFMGNPLACAAANASLAILESGDWQQQVADIEVQ 342
Query: 261 LRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTHDTI 320
LR+ L + V +VR G VE T PV+ + E+G+ +P +
Sbjct: 343 LREQLAPARDA--EMVADVRVLGAIGVVE---TTHPVNMAALQKFFVEQGVWIRP-FGKL 396
Query: 321 VRLTPPLSISSNELQEGSKALHDVLE 346
+ L PP I +LQ + A++ ++
Sbjct: 397 IYLMPPYIILPQQLQRLTAAVNRAVQ 422
>pdb|2JJF|A Chain A, N328a Mutant Of M. Tuberculosis Rv3290c
Length = 449
Score = 113 bits (282), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 105/367 (28%), Positives = 154/367 (41%), Gaps = 50/367 (13%)
Query: 14 SSRAFYNDKFPVFAERLTSMFGYDMVLP----MNTGAEGVETALKLARKW-GYVKKKFSI 68
S+ Y+ F E + G D LP + GA VE ALK A W + I
Sbjct: 94 SNSDVYSVAMARFVETFARVLG-DPALPHLFFVEGGALAVENALKAAFDWKSRHNQAHGI 152
Query: 69 DEAI---IVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITA-------- 117
D A+ ++ G FHGR+ +S++ I P K D+ I A
Sbjct: 153 DPALGTQVLHLRGAFHGRSGYTLSLTNTKPTITARFP------KFDWPRIDAPYMRPGLD 206
Query: 118 --------------LEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNI 163
F+ IA F+ EPIQGE G + A+R+LC +++
Sbjct: 207 EPAMAALEAEALRQARAAFETRPHDIACFVAEPIQGEGGDRHFRPEFFAAMRELCDEFDA 266
Query: 164 LMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEV-----MLC 218
L+I DE+Q+G +G A +V PD+V GK V V+A + V +
Sbjct: 267 LLIFDEVQTGCGLTGTAWAYQQLDVAPDIVAFGKK-----TQVCGVMAGRRVDEVADNVF 321
Query: 219 IQPGEHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKE 278
P ST+GGN A L+VI E L ER+ G+ LR L ++ FP V +
Sbjct: 322 AVPSRLASTWGGNLTDMVRARRILEVIEAEGLFERAVQHGKYLRARLDELAADFPAVVLD 381
Query: 279 VRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGS 338
RGRGL A TA ++ ++ +R ++ P VR PPL++S+ E+
Sbjct: 382 PRGRGLMCAFSLPTTA---DRDELIRQLWQRAVIVLPAGADTVRFRPPLTVSTAEIDAAI 438
Query: 339 KALHDVL 345
A+ L
Sbjct: 439 AAVRSAL 445
>pdb|2CIN|A Chain A, Lysine Aminotransferase From M. Tuberculosis In The
Internal Aldimine Form
pdb|2CJG|A Chain A, Lysine Aminotransferase From M. Tuberculosis In Bound Pmp
Form
pdb|2CJH|A Chain A, Lysine Aminotransferase From M. Tuberculosis In The
Internal Aldimine Form With Bound Substrate 2-
Ketoglutarate
pdb|2JJG|A Chain A, Crystal Structure Of The M. Tuberculosis Lysine-Epsilon
Aminotransferase (Rv3290c) Complexed To An Inhibitor
pdb|2CJD|A Chain A, Lysine Aminotransferase From M. Tuberculosis In External
Aldimine Form
Length = 449
Score = 113 bits (282), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 105/367 (28%), Positives = 154/367 (41%), Gaps = 50/367 (13%)
Query: 14 SSRAFYNDKFPVFAERLTSMFGYDMVLP----MNTGAEGVETALKLARKW-GYVKKKFSI 68
S+ Y+ F E + G D LP + GA VE ALK A W + I
Sbjct: 94 SNSDVYSVAMARFVETFARVLG-DPALPHLFFVEGGALAVENALKAAFDWKSRHNQAHGI 152
Query: 69 DEAI---IVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITA-------- 117
D A+ ++ G FHGR+ +S++ I P K D+ I A
Sbjct: 153 DPALGTQVLHLRGAFHGRSGYTLSLTNTKPTITARFP------KFDWPRIDAPYMRPGLD 206
Query: 118 --------------LEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNI 163
F+ IA F+ EPIQGE G + A+R+LC +++
Sbjct: 207 EPAMAALEAEALRQARAAFETRPHDIACFVAEPIQGEGGDRHFRPEFFAAMRELCDEFDA 266
Query: 164 LMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEV-----MLC 218
L+I DE+Q+G +G A +V PD+V GK V V+A + V +
Sbjct: 267 LLIFDEVQTGCGLTGTAWAYQQLDVAPDIVAFGKK-----TQVCGVMAGRRVDEVADNVF 321
Query: 219 IQPGEHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKE 278
P ST+GGN A L+VI E L ER+ G+ LR L ++ FP V +
Sbjct: 322 AVPSRLNSTWGGNLTDMVRARRILEVIEAEGLFERAVQHGKYLRARLDELAADFPAVVLD 381
Query: 279 VRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGS 338
RGRGL A TA ++ ++ +R ++ P VR PPL++S+ E+
Sbjct: 382 PRGRGLMCAFSLPTTA---DRDELIRQLWQRAVIVLPAGADTVRFRPPLTVSTAEIDAAI 438
Query: 339 KALHDVL 345
A+ L
Sbjct: 439 AAVRSAL 445
>pdb|2JJE|A Chain A, Crystal Structure Of T330s Mutant Of Rv3290c From M.
Tuberculosis
Length = 449
Score = 111 bits (278), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 104/367 (28%), Positives = 154/367 (41%), Gaps = 50/367 (13%)
Query: 14 SSRAFYNDKFPVFAERLTSMFGYDMVLP----MNTGAEGVETALKLARKW-GYVKKKFSI 68
S+ Y+ F E + G D LP + GA VE ALK A W + I
Sbjct: 94 SNSDVYSVAMARFVETFARVLG-DPALPHLFFVEGGALAVENALKAAFDWKSRHNQAHGI 152
Query: 69 DEAI---IVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITA-------- 117
D A+ ++ G FHGR+ +S++ I P K D+ I A
Sbjct: 153 DPALGTQVLHLRGAFHGRSGYTLSLTNTKPTITARFP------KFDWPRIDAPYMRPGLD 206
Query: 118 --------------LEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNI 163
F+ IA F+ EPIQGE G + A+R+LC +++
Sbjct: 207 EPAMAALEAEALRQARAAFETRPHDIACFVAEPIQGEGGDRHFRPEFFAAMRELCDEFDA 266
Query: 164 LMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEV-----MLC 218
L+I DE+Q+G +G A +V PD+V GK V V+A + V +
Sbjct: 267 LLIFDEVQTGCGLTGTAWAYQQLDVAPDIVAFGKK-----TQVCGVMAGRRVDEVADNVF 321
Query: 219 IQPGEHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKE 278
P S++GGN A L+VI E L ER+ G+ LR L ++ FP V +
Sbjct: 322 AVPSRLNSSWGGNLTDMVRARRILEVIEAEGLFERAVQHGKYLRARLDELAADFPAVVLD 381
Query: 279 VRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGS 338
RGRGL A TA ++ ++ +R ++ P VR PPL++S+ E+
Sbjct: 382 PRGRGLMCAFSLPTTA---DRDELIRQLWQRAVIVLPAGADTVRFRPPLTVSTAEIDAAI 438
Query: 339 KALHDVL 345
A+ L
Sbjct: 439 AAVRSAL 445
>pdb|2JJH|A Chain A, E243 Mutant Of M. Tuberculosis Rv3290c
Length = 449
Score = 110 bits (276), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 104/367 (28%), Positives = 153/367 (41%), Gaps = 50/367 (13%)
Query: 14 SSRAFYNDKFPVFAERLTSMFGYDMVLP----MNTGAEGVETALKLARKW-GYVKKKFSI 68
S+ Y+ F E + G D LP + GA VE ALK A W + I
Sbjct: 94 SNSDVYSVAMARFVETFARVLG-DPALPHLFFVEGGALAVENALKAAFDWKSRHNQAHGI 152
Query: 69 DEAI---IVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITA-------- 117
D A+ ++ G FHGR+ +S++ I P K D+ I A
Sbjct: 153 DPALGTQVLHLRGAFHGRSGYTLSLTNTKPTITARFP------KFDWPRIDAPYMRPGLD 206
Query: 118 --------------LEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNI 163
F+ IA F+ EPIQG G + A+R+LC +++
Sbjct: 207 EPAMAALEAEALRQARAAFETRPHDIACFVAEPIQGAGGDRHFRPEFFAAMRELCDEFDA 266
Query: 164 LMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEV-----MLC 218
L+I DE+Q+G +G A +V PD+V GK V V+A + V +
Sbjct: 267 LLIFDEVQTGCGLTGTAWAYQQLDVAPDIVAFGKK-----TQVCGVMAGRRVDEVADNVF 321
Query: 219 IQPGEHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKE 278
P ST+GGN A L+VI E L ER+ G+ LR L ++ FP V +
Sbjct: 322 AVPSRLNSTWGGNLTDMVRARRILEVIEAEGLFERAVQHGKYLRARLDELAADFPAVVLD 381
Query: 279 VRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGS 338
RGRGL A TA ++ ++ +R ++ P VR PPL++S+ E+
Sbjct: 382 PRGRGLMCAFSLPTTA---DRDELIRQLWQRAVIVLPAGADTVRFRPPLTVSTAEIDAAI 438
Query: 339 KALHDVL 345
A+ L
Sbjct: 439 AAVRSAL 445
>pdb|3HMU|A Chain A, Crystal Structure Of A Class Iii Aminotransferase From
Silicibacter Pomeroyi
pdb|3HMU|B Chain B, Crystal Structure Of A Class Iii Aminotransferase From
Silicibacter Pomeroyi
Length = 472
Score = 107 bits (267), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 86/356 (24%), Positives = 163/356 (45%), Gaps = 41/356 (11%)
Query: 18 FYNDKFPV-------FAERLTSMFGYDM--VLPMNTGAEGVETALKLARKWGYVKKKFSI 68
+YN F A++L + D+ V G+E +T +++ R Y + K
Sbjct: 89 YYNTFFKTTHVPAIALAQKLAELAPGDLNHVFFAGGGSEANDTNIRMVRT--YWQNKGQP 146
Query: 69 DEAIIVSCCGCFHGRTLAAIS------MSCDNEAIRGFGPLLPGHLKVDFGDIT------ 116
++ +I+S +HG T+A+ + M + I + + + GD+
Sbjct: 147 EKTVIISRKNAYHGSTVASSALGGMAGMHAQSGLIPDVHHINQPNWWAEGGDMDPEEFGL 206
Query: 117 ----ALEKIFKESG-DQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQ 171
LE+ E G +++A F+ EP+QG GVI+ PD Y ++ +C KY+IL+IADE+
Sbjct: 207 ARARELEEAILELGENRVAAFIAEPVQGAGGVIVAPDSYWPEIQRICDKYDILLIADEVI 266
Query: 172 SGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGE--HGSTFG 229
G R+G + +RP ++ + K L G P+ + EV I E HG T+
Sbjct: 267 CGFGRTGNWFGTQTMGIRPHIMTIAKGLSSGYAPIGGSIVCDEVAHVIGKDEFNHGYTYS 326
Query: 230 GNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVE 289
G+P+A+AVA+ +L ++ +E + + ++ + ++ P V E + G+ ++
Sbjct: 327 GHPVAAAVALENLRILEEENILDHVRNVAAPYLKEKWEALTDHP-LVGEAKIVGMMASIA 385
Query: 290 FDKTALPVSAY-----DICLKMKER----GILAKPTHDTIVRLTPPLSISSNELQE 336
+ + I +ER ++ + D ++ ++PPL I+ E+ E
Sbjct: 386 LTPNKASRAKFASEPGTIGYICRERCFANNLIMRHVGDRMI-ISPPLVITPAEIDE 440
>pdb|3A8U|X Chain X, Crystal Structure Of Omega-Amino Acid:pyruvate
Aminotransferase
Length = 449
Score = 105 bits (261), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 94/354 (26%), Positives = 166/354 (46%), Gaps = 39/354 (11%)
Query: 26 FAERLTSMF--GYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGR 83
AE++T + + V ++G+E TA+K+ R Y + K + ++ +HG
Sbjct: 98 LAEKITDLTPGNLNHVFFTDSGSECALTAVKMVR--AYWRLKGQATKTKMIGRARGYHGV 155
Query: 84 TLAAISMSCDNEAIRGFG-PL-----LPGHLKVDF---------GDITALEKIFK----E 124
+A S+ N + FG P+ LP L G I +++ K
Sbjct: 156 NIAGTSLGGVNGNRKLFGQPMQDVDHLPHTLLASNAYSRGMPKEGGIALADELLKLIELH 215
Query: 125 SGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASD 184
IA EP+ G AGV++PP+GYLK R++C+++NIL++ DE+ +G R+G M +D
Sbjct: 216 DASNIAAVFVEPLAGSAGVLVPPEGYLKRNREICNQHNILLVFDEVITGFGRTGSMFGAD 275
Query: 185 WEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCI--QPG-------EHGSTFGGNPLAS 235
V PD++ + K + G IP+ AV+A E+ QP HG T+ +P+A
Sbjct: 276 SFGVTPDLMCIAKQVTNGAIPMGAVIASTEIYQTFMNQPTPEYAVEFPHGYTYSAHPVAC 335
Query: 236 AVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEF---DK 292
A +A+L +++ E L + A + + L I+ V ++R GL A++ D
Sbjct: 336 AAGLAALCLLQKENLVQSVAEVAPHFEKALHGIKGA--KNVIDIRNFGLAGAIQIAPRDG 393
Query: 293 TALPVSAYDICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVLE 346
A+ V ++ + + + G + DT+ + P + +L A+ +VL
Sbjct: 394 DAI-VRPFEAGMALWKAGFYVRFGGDTL-QFGPTFNSKPQDLDRLFDAVGEVLN 445
>pdb|2EPJ|A Chain A, Crystal Structure Of Glutamate-1-Semialdehyde
2,1-Aminomutase From Aeropyrum Pernix
pdb|2ZSL|A Chain A, Crystal Structure Of Glutamate-1-Semialdehyde 2,1-
Aminomutase From Aeropyrum Pernix
pdb|2ZSM|A Chain A, Crystal Structure Of Glutamate-1-semialdehyde 2,1-
Aminomutase From Aeropyrum Pernix, Hexagonal Form
pdb|2ZSM|B Chain B, Crystal Structure Of Glutamate-1-semialdehyde 2,1-
Aminomutase From Aeropyrum Pernix, Hexagonal Form
pdb|2ZSM|C Chain C, Crystal Structure Of Glutamate-1-semialdehyde 2,1-
Aminomutase From Aeropyrum Pernix, Hexagonal Form
Length = 434
Score = 104 bits (260), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 73/222 (32%), Positives = 113/222 (50%), Gaps = 22/222 (9%)
Query: 38 MVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAI 97
M+ +N+G E TA++LAR GY + +I+ GC+HG A + + A
Sbjct: 114 MIRFVNSGTEATMTAIRLAR--GYTGRD------LILKFDGCYHGSHDAVLVAAGSAAAH 165
Query: 98 RGFGPLLPG--------HLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDG 149
G P G L + D+ ALE++F E GD+IAG + EP+ AGVI P
Sbjct: 166 YGV-PTSAGVPEAVARLTLVTPYNDVEALERVFAEYGDRIAGVIVEPVIANAGVIPPRRE 224
Query: 150 YLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAV 209
+L A++ L + L+I DE+ +G R G A + + D+++LGK +GGG PV AV
Sbjct: 225 FLAALQRLSRESGALLILDEVVTGF-RLGLEGAQGYFNIEGDIIVLGKIIGGG-FPVGAV 282
Query: 210 LADKEVMLCIQPGE---HGSTFGGNPLASAVAIASLDVIRDE 248
+EVM + P + TF +P+ A +A+L + +E
Sbjct: 283 AGSREVMSLLTPQGKVFNAGTFNAHPITMAAGLATLKALEEE 324
>pdb|2E7U|A Chain A, Crystal Structure Of Glutamate-1-Semialdehyde
2,1-Aminomutase From Thermus Thermophilus Hb8
Length = 424
Score = 104 bits (259), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 73/224 (32%), Positives = 118/224 (52%), Gaps = 27/224 (12%)
Query: 37 DMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEA 96
D+V +N+G E +AL+LAR GY + + IV G +HG + +
Sbjct: 109 DLVRFVNSGTEATMSALRLAR--GYTGRPY------IVKFRGNYHGHADGLLVEAGSGAL 160
Query: 97 IRGFGPLLPG--------HLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPD 148
G P G L +++ D L ++ K G++IA +FEP+ G AGV++P +
Sbjct: 161 TLGV-PSSAGVPEEYAKLTLVLEYNDPEGLREVLKRRGEEIAAIIFEPVVGNAGVLVPTE 219
Query: 149 GYLKAVRDLCSKYNILMIADEIQSG--LARSGRMLASDWEEVRPDMVILGKALGGGVIPV 206
+LKA+ + Y +L+IADE+ +G LA G A++ ++PD+V LGK LGGG +P
Sbjct: 220 DFLKALHE-AKAYGVLLIADEVMTGFRLAFGG---ATELLGLKPDLVTLGKILGGG-LPA 274
Query: 207 SAVLADKEVMLCIQ---PGEHGSTFGGNPLASAVAIASLDVIRD 247
+A +E+M + P T GNPLA A +A+L+++ +
Sbjct: 275 AAYAGRREIMEKVAPLGPVYQAGTLSGNPLAMAAGLATLELLEE 318
>pdb|3GJU|A Chain A, Crystal Structure Of A Putative Aminotransferase (Mll7127)
From Mesorhizobium Loti Maff303099 At 1.55 A Resolution
Length = 459
Score = 103 bits (258), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 71/233 (30%), Positives = 113/233 (48%), Gaps = 20/233 (8%)
Query: 119 EKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSG 178
E I E + IA F+ EPI G G++ PP GY + ++ + KY++L++ADE+ +G R G
Sbjct: 212 EXILAEGPETIAAFIGEPILGTGGIVPPPAGYWEKIQAVLKKYDVLLVADEVVTGFGRLG 271
Query: 179 RMLASDWEEVRPDMV-ILGKALGGGVIPVSAVL-ADKEVMLCIQPGE------HGSTFGG 230
SD ++PD++ I K L P+S V+ AD+ + +Q + HG T+
Sbjct: 272 TXFGSDHYGIKPDLITIAXKGLTSAYAPLSGVIVADRVWQVLVQGSDKLGSLGHGWTYSA 331
Query: 231 NPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEF 290
+P+ A +A+L++I + L + G R L K N V EVRG G AVEF
Sbjct: 332 HPICVAAGVANLELIDEXDLVTNAGETGAYFRAELAKAVGGHKN-VGEVRGDGXLAAVEF 390
Query: 291 -----DKTALPVSAY---DICLKMKERGIL--AKPTHDTIVRLTPPLSISSNE 333
D+ S + + G++ A P D I+ PPL ++ +
Sbjct: 391 VADKDDRVFFDASQKIGPQVATALAASGVIGRAXPQGD-ILGFAPPLCLTREQ 442
>pdb|2GSA|A Chain A, Crystal Structure Of Glutamate-1-Semialdehyde Aminomutase
(Aminotransferase, Wild-Type Form)
pdb|2GSA|B Chain B, Crystal Structure Of Glutamate-1-Semialdehyde Aminomutase
(Aminotransferase, Wild-Type Form)
pdb|4GSA|A Chain A, Crystal Structure Of Glutamate-1-semialdehyde Aminomutase
(aminotransferase) Reduced With Cyanoborohydrate
pdb|4GSA|B Chain B, Crystal Structure Of Glutamate-1-semialdehyde Aminomutase
(aminotransferase) Reduced With Cyanoborohydrate
pdb|3GSB|A Chain A, Crystal Structure Of Glutamate-1-Semialdehyde Aminomutase
In Complex With Gabaculine
pdb|3GSB|B Chain B, Crystal Structure Of Glutamate-1-Semialdehyde Aminomutase
In Complex With Gabaculine
Length = 432
Score = 103 bits (258), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 85/307 (27%), Positives = 137/307 (44%), Gaps = 43/307 (14%)
Query: 37 DMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEA 96
+MV +N+G E L+L R + K I+ GC+HG + + A
Sbjct: 114 EMVRFVNSGTEACMAVLRLMRAYTGRDK--------IIKFEGCYHGHADMFLVKAGSGVA 165
Query: 97 IRGFGPLLPG--------HLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPD 148
G P PG L + D+ A++ +F E+ +IAG + EPI G +G I+P
Sbjct: 166 TLGL-PSSPGVPKKTTANTLTTPYNDLEAVKALFAENPGEIAGVILEPIVGNSGFIVPDA 224
Query: 149 GYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEE---VRPDMVILGKALGGGVIP 205
G+L+ +R++ +++ L++ DE+ +G R+ +E V PD+ LGK +GGG +P
Sbjct: 225 GFLEGLREITLEHDALLVFDEVMTGF----RIAYGGVQEKFGVTPDLTTLGKIIGGG-LP 279
Query: 206 VSAVLADKEVMLCIQPG---EHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELR 262
V A +E+M + P T GNPLA I +L+++R E + + L
Sbjct: 280 VGAYGGKREIMQLVAPAGPMYQAGTLSGNPLAMTAGIKTLELLRQPGTYEYLDQITKRLS 339
Query: 263 QHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLK------------MKERG 310
L I Q+ + + G+F F T PV Y+ K M E+G
Sbjct: 340 DGLLAIAQETGHAACGGQVSGMFG---FFFTEGPVHNYEDAKKSDLQKFSRFHRGMLEQG 396
Query: 311 ILAKPTH 317
I P+
Sbjct: 397 IYLAPSQ 403
>pdb|3FCR|A Chain A, Crystal Structure Of Putative Aminotransferase
(Yp_614685.1) From Silicibacter Sp. Tm1040 At 1.80 A
Resolution
Length = 459
Score = 103 bits (256), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 70/235 (29%), Positives = 115/235 (48%), Gaps = 21/235 (8%)
Query: 121 IFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRM 180
I +E D IA F+ EPI G G++ PP GY +A++ + +K++IL++ADE+ +G R G
Sbjct: 213 IEREGADTIAAFIGEPILGTGGIVPPPAGYWEAIQTVLNKHDILLVADEVVTGFGRLGTX 272
Query: 181 LASDWEEVRPDMV-ILGKALGGGVIPVSAVLADKEVMLCIQPGE-------HGSTFGGNP 232
SD + PD++ I K L P+S + +V ++ G HG T+ +P
Sbjct: 273 FGSDHYGLEPDIITIAXKGLTSAYAPLSGSIVSDKVWKVLEQGTDENGPIGHGWTYSAHP 332
Query: 233 LASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDK 292
+ +A +A+L ++ + L + +G L + Q N V +VRG GL AVEF K
Sbjct: 333 IGAAAGVANLKLLDELNLVSNAGEVGAYLNATXAEALSQHAN-VGDVRGEGLLCAVEFVK 391
Query: 293 TALPVSAYD--------ICLKMKERGIL---AKPTHDTIVRLTPPLSISSNELQE 336
+ +D I K+ E+ + A P D I+ PP ++ E +
Sbjct: 392 DRDSRTFFDAADKIGPQISAKLLEQDKIIARAXPQGD-ILGFAPPFCLTRAEADQ 445
>pdb|2HOY|A Chain A, Inter-Subunit Signaling In Gsam
pdb|2HOY|B Chain B, Inter-Subunit Signaling In Gsam
pdb|2HOZ|A Chain A, Inter-Subunit Signaling In Gsam
pdb|2HOZ|B Chain B, Inter-Subunit Signaling In Gsam
pdb|2HP1|A Chain A, Inter-Subunit Signaling In Gsam
pdb|2HP1|B Chain B, Inter-Subunit Signaling In Gsam
pdb|2HP2|A Chain A, Inter-Subunit Signaling In Gsam
pdb|2HP2|B Chain B, Inter-Subunit Signaling In Gsam
Length = 432
Score = 103 bits (256), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 84/307 (27%), Positives = 137/307 (44%), Gaps = 43/307 (14%)
Query: 37 DMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEA 96
+MV +N+G E L++ R + K I+ GC+HG + + A
Sbjct: 114 EMVRFVNSGTEACMAVLRIMRAYTGRDK--------IIKFEGCYHGHADMFLVKAGSGVA 165
Query: 97 IRGFGPLLPG--------HLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPD 148
G P PG L + D+ A++ +F E+ +IAG + EPI G +G I+P
Sbjct: 166 TLGL-PSSPGVPKKTTANTLTTPYNDLEAVKALFAENPGEIAGVILEPIVGNSGFIVPDA 224
Query: 149 GYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEE---VRPDMVILGKALGGGVIP 205
G+L+ +R++ +++ L++ DE+ +G R+ +E V PD+ LGK +GGG +P
Sbjct: 225 GFLEGLREITLEHDALLVFDEVMTGF----RIAYGGVQEKFGVTPDLTTLGKIIGGG-LP 279
Query: 206 VSAVLADKEVMLCIQPG---EHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELR 262
V A +E+M + P T GNPLA I +L+++R E + + L
Sbjct: 280 VGAYGGKREIMQLVAPAGPMYQAGTLSGNPLAMTAGIKTLELLRQPGTYEYLDQITKRLS 339
Query: 263 QHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLK------------MKERG 310
L I Q+ + + G+F F T PV Y+ K M E+G
Sbjct: 340 DGLLAIAQETGHAACGGQVSGMFG---FFFTEGPVHNYEDAKKSDLQKFSRFHRGMLEQG 396
Query: 311 ILAKPTH 317
I P+
Sbjct: 397 IYLAPSQ 403
>pdb|3FQA|A Chain A, Gabaculien Complex Of Gabaculine Resistant Gsam Version
pdb|3FQA|B Chain B, Gabaculien Complex Of Gabaculine Resistant Gsam Version
Length = 427
Score = 102 bits (255), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 85/307 (27%), Positives = 137/307 (44%), Gaps = 43/307 (14%)
Query: 37 DMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEA 96
+MV +N+G E L+L R + K I+ GC+HG + + A
Sbjct: 109 EMVRFVNSGTEACMAVLRLMRAYTGRDK--------IIKFEGCYHGHADMFLVKAGSGVA 160
Query: 97 IRGFGPLLPG--------HLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPD 148
G P PG L + D+ A++ +F E+ +IAG + EPI G +G I+P
Sbjct: 161 TLGL-PSSPGVPKKTTANTLTTPYNDLEAVKALFAENPGEIAGVILEPIVGNSGFIVPDA 219
Query: 149 GYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEE---VRPDMVILGKALGGGVIP 205
G+L+ +R++ +++ L++ DE+ +G R+ +E V PD+ LGK +GGG +P
Sbjct: 220 GFLEGLREITLEHDALLVFDEVITGF----RIAYGGVQEKFGVTPDLTTLGKIIGGG-LP 274
Query: 206 VSAVLADKEVMLCIQPG---EHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELR 262
V A +E+M + P T GNPLA I +L+++R E + + L
Sbjct: 275 VGAYGGKREIMQLVAPAGPMYQAGTLSGNPLAMTAGIKTLELLRQPGTYEYLDQITKRLS 334
Query: 263 QHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLK------------MKERG 310
L I Q+ + + G+F F T PV Y+ K M E+G
Sbjct: 335 DGLLAIAQETGHAACGGQVSGMFG---FFFTEGPVHNYEDAKKSDLQKFSRFHRGMLEQG 391
Query: 311 ILAKPTH 317
I P+
Sbjct: 392 IYLAPSQ 398
>pdb|3FQ7|A Chain A, Gabaculine Complex Of Gsam
pdb|3FQ7|B Chain B, Gabaculine Complex Of Gsam
pdb|3USF|A Chain A, Crystal Structure Of Dava-4
pdb|3USF|B Chain B, Crystal Structure Of Dava-4
Length = 427
Score = 102 bits (254), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 84/307 (27%), Positives = 137/307 (44%), Gaps = 43/307 (14%)
Query: 37 DMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEA 96
+MV +N+G E L++ R + K I+ GC+HG + + A
Sbjct: 109 EMVRFVNSGTEACMAVLRIMRAYTGRDK--------IIKFEGCYHGHADMFLVKAGSGVA 160
Query: 97 IRGFGPLLPG--------HLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPD 148
G P PG L + D+ A++ +F E+ +IAG + EPI G +G I+P
Sbjct: 161 TLGL-PSSPGVPKKTTANTLTTPYNDLEAVKALFAENPGEIAGVILEPIVGNSGFIVPDA 219
Query: 149 GYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEE---VRPDMVILGKALGGGVIP 205
G+L+ +R++ +++ L++ DE+ +G R+ +E V PD+ LGK +GGG +P
Sbjct: 220 GFLEGLREITLEHDALLVFDEVMTGF----RIAYGGVQEKFGVTPDLTTLGKIIGGG-LP 274
Query: 206 VSAVLADKEVMLCIQPG---EHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELR 262
V A +E+M + P T GNPLA I +L+++R E + + L
Sbjct: 275 VGAYGGKREIMQLVAPAGPMYQAGTLSGNPLAMTAGIKTLELLRQPGTYEYLDQITKRLS 334
Query: 263 QHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLK------------MKERG 310
L I Q+ + + G+F F T PV Y+ K M E+G
Sbjct: 335 DGLLAIAQETGHAACGGQVSGMFG---FFFTEGPVHNYEDAKKSDLQKFSRFHRGMLEQG 391
Query: 311 ILAKPTH 317
I P+
Sbjct: 392 IYLAPSQ 398
>pdb|3FQ8|A Chain A, M248i Mutant Of Gsam
pdb|3FQ8|B Chain B, M248i Mutant Of Gsam
Length = 427
Score = 101 bits (252), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 84/307 (27%), Positives = 137/307 (44%), Gaps = 43/307 (14%)
Query: 37 DMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEA 96
+MV +N+G E L++ R + K I+ GC+HG + + A
Sbjct: 109 EMVRFVNSGTEACMAVLRIMRAYTGRDK--------IIKFEGCYHGHADMFLVKAGSGVA 160
Query: 97 IRGFGPLLPG--------HLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPD 148
G P PG L + D+ A++ +F E+ +IAG + EPI G +G I+P
Sbjct: 161 TLGL-PSSPGVPKKTTANTLTTPYNDLEAVKALFAENPGEIAGVILEPIVGNSGFIVPDA 219
Query: 149 GYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEE---VRPDMVILGKALGGGVIP 205
G+L+ +R++ +++ L++ DE+ +G R+ +E V PD+ LGK +GGG +P
Sbjct: 220 GFLEGLREITLEHDALLVFDEVITGF----RIAYGGVQEKFGVTPDLTTLGKIIGGG-LP 274
Query: 206 VSAVLADKEVMLCIQPG---EHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELR 262
V A +E+M + P T GNPLA I +L+++R E + + L
Sbjct: 275 VGAYGGKREIMQLVAPAGPMYQAGTLSGNPLAMTAGIKTLELLRQPGTYEYLDQITKRLS 334
Query: 263 QHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLK------------MKERG 310
L I Q+ + + G+F F T PV Y+ K M E+G
Sbjct: 335 DGLLAIAQETGHAACGGQVSGMFG---FFFTEGPVHNYEDAKKSDLQKFSRFHRGMLEQG 391
Query: 311 ILAKPTH 317
I P+
Sbjct: 392 IYLAPSQ 398
>pdb|3DXW|A Chain A, The Crystal Structure Of Alpha-Amino-Epsilon-Caprolactam
Racemase From Achromobacter Obae Complexed With Epsilon
Caprolactam
pdb|3DXW|B Chain B, The Crystal Structure Of Alpha-Amino-Epsilon-Caprolactam
Racemase From Achromobacter Obae Complexed With Epsilon
Caprolactam
Length = 452
Score = 101 bits (251), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 90/340 (26%), Positives = 161/340 (47%), Gaps = 44/340 (12%)
Query: 25 VFAERLTSMF---GYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFH 81
AERL + F G + ++G++ E A + K + + +++ G +H
Sbjct: 103 TLAERLLASFPGEGTHKIWFGHSGSDANEAAYRAIVK--------ATGRSGVIAFAGAYH 154
Query: 82 GRTLAAISMSCDN---EAIRGFGPLL---PGHLKVDFGDITA-------LEKIFKESGDQ 128
G T+ +++ S + +A + G +L P + D T EK+
Sbjct: 155 GCTVGSMAFSGHSVQADAAKADGLILLPYPDPYRPYRNDPTGDAILTLLTEKLAAVPAGS 214
Query: 129 IAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEV 188
I EPIQ + G+I+PPDG+L+ D+C + IL++ DE++ GLARSGR+ + E
Sbjct: 215 IGAAFIEPIQSDGGLIVPPDGFLRKFADICRAHGILVVCDEVKVGLARSGRLHCFEHEGF 274
Query: 189 RPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRDE 248
PD +++ GG +P+SAV+A E++ C T GNP+++A +A L+ I +
Sbjct: 275 VPD-ILVLGKGLGGGLPLSAVIAPAEILDCASAFAM-QTLHGNPISAAAGLAVLETIDRD 332
Query: 249 KLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEF------------DKTALP 296
L + G LR L ++ ++ P + ++RGRGL +E + L
Sbjct: 333 DLPAMAERKGRLLRDGLSELAKRHP-LIGDIRGRGLACGMELVCDRQSREPARAETAKLI 391
Query: 297 VSAYDICLKMKERGILAKPTHDTIVRLTPPLSISSNELQE 336
AY + L + G+ + ++ TPPL+I+ ++ +
Sbjct: 392 YRAYQLGLVVYYVGM-----NGNVLEFTPPLTITETDIHK 426
>pdb|2ZUK|A Chain A, The Crystal Structure Of Alpha-Amino-Epsilon-Caprolactam
Racemase From Achromobacter Obae Complexed With Epsilon
Caprolactam (Different Binding Mode)
pdb|2ZUK|B Chain B, The Crystal Structure Of Alpha-Amino-Epsilon-Caprolactam
Racemase From Achromobacter Obae Complexed With Epsilon
Caprolactam (Different Binding Mode)
pdb|3DXV|A Chain A, The Crystal Structure Of Alpha-Amino-Epsilon-Caprolactam
Racemase From Achromobacter Obae
pdb|3DXV|B Chain B, The Crystal Structure Of Alpha-Amino-Epsilon-Caprolactam
Racemase From Achromobacter Obae
Length = 439
Score = 100 bits (250), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 90/340 (26%), Positives = 161/340 (47%), Gaps = 44/340 (12%)
Query: 25 VFAERLTSMF---GYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFH 81
AERL + F G + ++G++ E A + K + + +++ G +H
Sbjct: 90 TLAERLLASFPGEGTHKIWFGHSGSDANEAAYRAIVK--------ATGRSGVIAFAGAYH 141
Query: 82 GRTLAAISMSCDN---EAIRGFGPLL---PGHLKVDFGDITA-------LEKIFKESGDQ 128
G T+ +++ S + +A + G +L P + D T EK+
Sbjct: 142 GCTVGSMAFSGHSVQADAAKADGLILLPYPDPYRPYRNDPTGDAILTLLTEKLAAVPAGS 201
Query: 129 IAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEV 188
I EPIQ + G+I+PPDG+L+ D+C + IL++ DE++ GLARSGR+ + E
Sbjct: 202 IGAAFIEPIQSDGGLIVPPDGFLRKFADICRAHGILVVCDEVKVGLARSGRLHCFEHEGF 261
Query: 189 RPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRDE 248
PD +++ GG +P+SAV+A E++ C T GNP+++A +A L+ I +
Sbjct: 262 VPD-ILVLGKGLGGGLPLSAVIAPAEILDCASAFAM-QTLHGNPISAAAGLAVLETIDRD 319
Query: 249 KLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEF------------DKTALP 296
L + G LR L ++ ++ P + ++RGRGL +E + L
Sbjct: 320 DLPAMAERKGRLLRDGLSELAKRHP-LIGDIRGRGLACGMELVCDRQSREPARAETAKLI 378
Query: 297 VSAYDICLKMKERGILAKPTHDTIVRLTPPLSISSNELQE 336
AY + L + G+ + ++ TPPL+I+ ++ +
Sbjct: 379 YRAYQLGLVVYYVGM-----NGNVLEFTPPLTITETDIHK 413
>pdb|2CFB|A Chain A, Glutamate-1-Semialdehyde 2,1-Aminomutase From
Thermosynechococcus Elongatus
Length = 411
Score = 100 bits (250), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 79/276 (28%), Positives = 127/276 (46%), Gaps = 25/276 (9%)
Query: 37 DMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEA 96
+MV +N+G E L+L R + +K ++ GC+HG + + A
Sbjct: 93 EMVRFVNSGTEACMAVLRLMRAYTQREK--------VIKFEGCYHGHADMFLVKAGSGVA 144
Query: 97 IRGFGPLLPGHLKVD--------FGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPD 148
G P PG K + D+ A+ ++F++ + IAG + EP+ G AG I P
Sbjct: 145 TLGL-PDSPGVPKATTAATLTAPYNDLEAVSRLFEQYPNDIAGVILEPVVGNAGFIPPDA 203
Query: 149 GYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSA 208
G+L+ +R+L +Y L++ DE+ +G R A + V PD+ LGK +GGG +PV A
Sbjct: 204 GFLEGLRELTKQYGALLVFDEVMTGF-RIAYGGAQEKFGVTPDLTTLGKVIGGG-LPVGA 261
Query: 209 VLADKEVMLCIQPG---EHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHL 265
E+M + P T GNPLA I +L+++ E + +L Q L
Sbjct: 262 YGGRAEIMKMVAPAGPVYQAGTLSGNPLAMTAGIKTLEILSRPGSYEHLDRITGKLVQGL 321
Query: 266 FKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYD 301
++F + V G+F TA PV+ Y+
Sbjct: 322 LDAAREFGHEVCGGHISGMFGLF---FTAGPVTNYE 354
>pdb|3I5T|A Chain A, Crystal Structure Of Aminotransferase Prk07036 From
Rhodobacter Sphaeroides Kd131
pdb|3I5T|B Chain B, Crystal Structure Of Aminotransferase Prk07036 From
Rhodobacter Sphaeroides Kd131
Length = 476
Score = 100 bits (249), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 74/227 (32%), Positives = 115/227 (50%), Gaps = 21/227 (9%)
Query: 127 DQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWE 186
D IA FL EPI GVIIPP GY + +C K++IL I+DE+ +G R G AS+
Sbjct: 220 DTIAAFLAEPILASGGVIIPPAGYHARFKAICEKHDILYISDEVVTGFGRCGEWFASEKV 279
Query: 187 -EVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGE--------HGSTFGGNPLASAV 237
V PD++ K + G +P+ LA E +L GE +G T+ P+A A
Sbjct: 280 FGVVPDIITFAKGVTSGYVPLGG-LAISEAVLARISGENAKGSWFTNGYTYSNQPVACAA 338
Query: 238 AIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVE--FDKTAL 295
A+A+++++ E + +++ + + L + + P V E R GL V+ D T
Sbjct: 339 ALANIELMEREGIVDQAREMADYFAAALASL-RDLPG-VAETRSVGLVGCVQCLLDPTRA 396
Query: 296 PVSAYD--ICLKMKER----GILAKPTHDTIVRLTPPLSISSNELQE 336
+A D LK+ ER G++ +P D V ++PPL IS ++ E
Sbjct: 397 DGTAEDKAFTLKIDERCFELGLIVRPLGDLCV-ISPPLIISRAQIDE 442
>pdb|3BS8|A Chain A, Crystal Structure Of Glutamate 1-Semialdehyde
Aminotransferase Complexed With
Pyridoxamine-5'-Phosphate From Bacillus Subtilis
Length = 438
Score = 99.0 bits (245), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 68/217 (31%), Positives = 109/217 (50%), Gaps = 22/217 (10%)
Query: 37 DMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEA 96
++V +++G E +AL+LAR GY + I+ GC+HG + + + A
Sbjct: 118 EIVRMVSSGTEATMSALRLAR--GYTGRN------KILKFEGCYHGHGDSLLIKAGSGVA 169
Query: 97 IRGFGPLLPG--------HLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPD 148
G P PG + V + D+ +++ F++ G+ IAG + EP+ G GV+ P +
Sbjct: 170 TLGL-PDSPGVPEGIAKNTITVPYNDLESVKLAFQQFGEDIAGVIVEPVAGNMGVVPPQE 228
Query: 149 GYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSA 208
G+L+ +RD+ +Y L+I DE+ +G R A + V PD+ LGK +GGG +PV A
Sbjct: 229 GFLQGLRDITEQYGSLLIFDEVMTGF-RVDYNCAQGYFGVTPDLTCLGKVIGGG-LPVGA 286
Query: 209 VLADKEVMLCIQPG---EHGSTFGGNPLASAVAIASL 242
E+M I P T GNPLA + +L
Sbjct: 287 YGGKAEIMEQIAPSGPIYQAGTLSGNPLAMTAGLETL 323
>pdb|3K28|A Chain A, Crystal Structure Of A Glutamate-1-Semialdehyde
Aminotransferase From Bacillus Anthracis With Bound
Pyridoxal 5'phosphate
pdb|3K28|B Chain B, Crystal Structure Of A Glutamate-1-Semialdehyde
Aminotransferase From Bacillus Anthracis With Bound
Pyridoxal 5'phosphate
pdb|3K28|C Chain C, Crystal Structure Of A Glutamate-1-Semialdehyde
Aminotransferase From Bacillus Anthracis With Bound
Pyridoxal 5'phosphate
pdb|3K28|D Chain D, Crystal Structure Of A Glutamate-1-Semialdehyde
Aminotransferase From Bacillus Anthracis With Bound
Pyridoxal 5'phosphate
Length = 429
Score = 95.5 bits (236), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 70/236 (29%), Positives = 112/236 (47%), Gaps = 25/236 (10%)
Query: 28 ERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAA 87
ER+ S+ ++V +N+G E +AL+LAR GY + I+ GC+HG +
Sbjct: 104 ERVPSI---EIVRXVNSGTEATXSALRLAR--GYTGRN------KILKFIGCYHGHGDSL 152
Query: 88 ISMSCDNEAIRGFGPLLPG--------HLKVDFGDITALEKIFKESGDQIAGFLFEPIQG 139
+ + A G P PG + V + D+ +++ F++ GD IA + EP+ G
Sbjct: 153 LIKAGSGVATLGL-PDSPGVPEGVAKNTITVAYNDLESVKYAFEQFGDDIACVIVEPVAG 211
Query: 140 EAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKAL 199
GV+ P G+L+ +R++ + L+I DE+ +G R + V PD+ LGK +
Sbjct: 212 NXGVVPPQPGFLEGLREVTEQNGALLIFDEVXTGF-RVAYNCGQGYYGVTPDLTCLGKVI 270
Query: 200 GGGVIPVSAVLADKEVMLCIQPG---EHGSTFGGNPLASAVAIASLDVIRDEKLAE 252
GGG +PV A E+ + P T GNPLA A +L + E E
Sbjct: 271 GGG-LPVGAYGGKAEIXRQVAPSGPIYQAGTLSGNPLAXAAGYETLVQLTPESYVE 325
>pdb|4E77|A Chain A, 2.0a Crystal Structure Of A Glutamate-1-Semialdehyde
Aminotransferase From Yersinia Pestis Co92
Length = 429
Score = 92.0 bits (227), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 80/265 (30%), Positives = 119/265 (44%), Gaps = 29/265 (10%)
Query: 37 DMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEA 96
D V +N+G E +A++LAR GY + I+ GC+HG + + + A
Sbjct: 110 DXVRXVNSGTEATXSAIRLAR--GYTGRD------KIIKFEGCYHGHA-DCLLVKAGSGA 160
Query: 97 IRGFGPLLPG--------HLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPD 148
+ P PG L + D+ ++ + F++ ++A + EP+ G I P
Sbjct: 161 LTLGQPNSPGVPTDFAKHTLTCTYNDLASVRQAFEQYPQEVACIIVEPVAGNXNCIPPLP 220
Query: 149 GYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSA 208
+L +R LC ++ L+I DE+ +G R A D+ V PD+ LGK +GGG PV A
Sbjct: 221 EFLPGLRALCDEFGALLIIDEVXTGF-RVALAGAQDYYHVIPDLTCLGKIIGGGX-PVGA 278
Query: 209 VLADKEVMLCIQPG---EHGSTFGGNPLASAVAIASLDVIRD----EKLAERSAHLGEEL 261
+EV + P T GNP+A A A L I E L E + L L
Sbjct: 279 FGGRREVXNALAPTGPVYQAGTLSGNPIAXAAGFACLTEISQVGVYETLTELTDSLATGL 338
Query: 262 RQHLFKIQQQFPNYVKEVRGR-GLF 285
R H K ++ P V V G GLF
Sbjct: 339 R-HAAK-EENIPLVVNHVGGXFGLF 361
>pdb|3L44|A Chain A, Crystal Structure Of Bacillus Anthracis Heml-1, Glutamate
Semialdehyde Aminotransferase
pdb|3L44|B Chain B, Crystal Structure Of Bacillus Anthracis Heml-1, Glutamate
Semialdehyde Aminotransferase
Length = 434
Score = 90.1 bits (222), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 70/248 (28%), Positives = 112/248 (45%), Gaps = 34/248 (13%)
Query: 37 DMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEA 96
D V +N+G E V T +++AR + K I GC+HG + + +
Sbjct: 112 DKVRFVNSGTEAVXTTIRVARAYTGRTK--------IXKFAGCYHGHSDLVLVAA----- 158
Query: 97 IRGFGPLLPGH--------------LKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAG 142
G GP G + V F ++ L++ + G ++A L EPI G G
Sbjct: 159 --GSGPSTLGTPDSAGVPQSIAQEVITVPFNNVETLKEALDKWGHEVAAILVEPIVGNFG 216
Query: 143 VIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGG 202
++ P G+L+ V +L + L+I DE+ + R A D V PD+ LG +GGG
Sbjct: 217 IVEPKPGFLEKVNELVHEAGALVIYDEVITAF-RFXYGGAQDLLGVTPDLTALGXVIGGG 275
Query: 203 VIPVSAVLADKEV---MLCIQPGEHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGE 259
+P+ A KE+ + + P T GNP + A IA L+V++ E L E+ LG
Sbjct: 276 -LPIGAYGGKKEIXEQVAPLGPAYQAGTXAGNPASXASGIACLEVLQQEGLYEKLDELGA 334
Query: 260 ELRQHLFK 267
L + + +
Sbjct: 335 TLEKGILE 342
>pdb|1OHV|A Chain A, 4-aminobutyrate-aminotransferase From Pig
pdb|1OHV|B Chain B, 4-aminobutyrate-aminotransferase From Pig
pdb|1OHV|C Chain C, 4-aminobutyrate-aminotransferase From Pig
pdb|1OHV|D Chain D, 4-aminobutyrate-aminotransferase From Pig
pdb|1OHW|A Chain A, 4-Aminobutyrate-Aminotransferase Inactivated By
Gamma-Vinyl Gaba
pdb|1OHW|B Chain B, 4-Aminobutyrate-Aminotransferase Inactivated By
Gamma-Vinyl Gaba
pdb|1OHW|C Chain C, 4-Aminobutyrate-Aminotransferase Inactivated By
Gamma-Vinyl Gaba
pdb|1OHW|D Chain D, 4-Aminobutyrate-Aminotransferase Inactivated By
Gamma-Vinyl Gaba
pdb|1OHY|A Chain A, 4-Aminobutyrate-Aminotransferase Inactivated By
Gamma-Ethynyl Gaba
pdb|1OHY|B Chain B, 4-Aminobutyrate-Aminotransferase Inactivated By
Gamma-Ethynyl Gaba
pdb|1OHY|C Chain C, 4-Aminobutyrate-Aminotransferase Inactivated By
Gamma-Ethynyl Gaba
pdb|1OHY|D Chain D, 4-Aminobutyrate-Aminotransferase Inactivated By
Gamma-Ethynyl Gaba
Length = 472
Score = 81.3 bits (199), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 83/354 (23%), Positives = 142/354 (40%), Gaps = 54/354 (15%)
Query: 35 GYDMVLPMNTGAEGVETALKLARKWGYVKKK----FSIDE--------------AIIVSC 76
G ++ M G+ E A K W K++ FS +E I+S
Sbjct: 126 GMSQLITMACGSCSNENAFKTIFMWYRSKERGQSAFSKEELETCMINQAPGCPDYSILSF 185
Query: 77 CGCFHGRTLAAISMSCDNEAIRGFG------PLLP-GHLKVDFGDIT---------ALEK 120
G FHGRT+ ++ + ++AI P+ P LK + LE+
Sbjct: 186 MGAFHGRTMGCLA-TTHSKAIHKIDIPSFDWPIAPFPRLKYPLEEFVKENQQEEARCLEE 244
Query: 121 I------FKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGL 174
+ +++ +AG + EPIQ E G D + + +RD+ K+ + DE+Q+G
Sbjct: 245 VEDLIVKYRKKKKTVAGIIVEPIQSEGGDNHASDDFFRKLRDISRKHGCAFLVDEVQTGG 304
Query: 175 ARSGRMLASD-WEEVRPD--MVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGN 231
+G+ A + W P M K + GG KE P +T+ G+
Sbjct: 305 GSTGKFWAHEHWGLDDPADVMTFSKKMMTGGFF-------HKEEFRPNAPYRIFNTWLGD 357
Query: 232 PLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFD 291
P + + +++I+ E L +AH G+ L L +Q ++P ++ VRGRG F FD
Sbjct: 358 PSKNLLLAEVINIIKREDLLSNAAHAGKVLLTGLLDLQARYPQFISRVRGRGTF--CSFD 415
Query: 292 KTALPVSAYDICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVL 345
+ I + + +G++ D +R P L + D+L
Sbjct: 416 TPDESIRNKLISI-ARNKGVMLGGCGDKSIRFRPTLVFRDHHAHLFLNIFSDIL 468
>pdb|2YKU|A Chain A, Structural Determinants Of The Beta-Selectivity Of A
Bacterial Aminotransferase
pdb|2YKU|B Chain B, Structural Determinants Of The Beta-Selectivity Of A
Bacterial Aminotransferase
pdb|2YKU|C Chain C, Structural Determinants Of The Beta-Selectivity Of A
Bacterial Aminotransferase
pdb|2YKV|A Chain A, Structural Determinants Of The Beta-Selectivity Of A
Bacterial Aminotransferase
pdb|2YKV|B Chain B, Structural Determinants Of The Beta-Selectivity Of A
Bacterial Aminotransferase
pdb|2YKV|C Chain C, Structural Determinants Of The Beta-Selectivity Of A
Bacterial Aminotransferase
pdb|2YKX|A Chain A, Structural Determinants Of The Beta-Selectivity Of A
Bacterial Aminotransferase
pdb|2YKX|B Chain B, Structural Determinants Of The Beta-Selectivity Of A
Bacterial Aminotransferase
pdb|2YKX|C Chain C, Structural Determinants Of The Beta-Selectivity Of A
Bacterial Aminotransferase
pdb|2YKY|A Chain A, Structural Determinants Of The Beta-Selectivity Of A
Bacterial Aminotransferase
pdb|2YKY|B Chain B, Structural Determinants Of The Beta-Selectivity Of A
Bacterial Aminotransferase
pdb|2YKY|C Chain C, Structural Determinants Of The Beta-Selectivity Of A
Bacterial Aminotransferase
pdb|4AO4|A Chain A, Structural Determinants Of The Beta-Selectivity Of A
Bacterial Aminotransferase
pdb|4AO4|B Chain B, Structural Determinants Of The Beta-Selectivity Of A
Bacterial Aminotransferase
pdb|4AO4|C Chain C, Structural Determinants Of The Beta-Selectivity Of A
Bacterial Aminotransferase
Length = 465
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 78/310 (25%), Positives = 118/310 (38%), Gaps = 41/310 (13%)
Query: 25 VFAERLTSMF-GYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGR 83
+FAE + F D+V N+G E AL A K + D G +HG
Sbjct: 144 LFAEAVCDRFPSIDLVRFTNSGTEANLMALATATAITGRKTVLAFD--------GGYHGG 195
Query: 84 TLAAISMSCDNEAIRGFGPLLPGHLKVD-FGDITALEKIFKESGDQIAGFLFEPIQGEAG 142
L S A P H+ + + D+ + K G A L EP+ G G
Sbjct: 196 LLNFASGHAPTNA--------PYHVVLGVYNDVEGTADLLKRHGHDCAAILVEPMLGAGG 247
Query: 143 VIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGG 202
+ +L +R S+ L+I DE+ + G A + + D+ LGK +GGG
Sbjct: 248 CVPAERAFLDLLRAEASRCGALLIFDEVMTSRLSGGG--AQEMLGISADLTTLGKYIGGG 305
Query: 203 VIPVSAVLADKEVMLCIQPGE-----HGSTFGGNPLASAVAIASLDVIRDEKLAERSAHL 257
+ A +++M P H TF N L + A+L I + A +
Sbjct: 306 -MSFGAFGGRRDLMERFDPARDGAFAHAGTFNNNILTMSAGHAALTQIYTRQAASDLSAS 364
Query: 258 GEELRQHLFKI--QQQFPNYVKEVRGRGLFNAVEFD----KTALPVSAYDICLK------ 305
G+ R +L +I + Q P + G G + F ++A V A D LK
Sbjct: 365 GDRFRANLNRIAVENQAP---LQFTGLGSLGTIHFSRAPIRSAGDVRAADQQLKELFFFH 421
Query: 306 MKERGILAKP 315
M +GI P
Sbjct: 422 MLRKGIYLAP 431
>pdb|2CY8|A Chain A, Crystal Structure Of D-Phenylglycine Aminotransferase
(D-Phgat) From Pseudomonas Strutzeri St-201
Length = 453
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 71/253 (28%), Positives = 115/253 (45%), Gaps = 21/253 (8%)
Query: 26 FAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGR-- 83
+AER+ + F + + G ET L R V + F+ +I+ G +HG
Sbjct: 102 WAERIVAAF--PSIRKLRFTGSGTETTLLALR----VARAFT-GRRMILRFEGHYHGWHD 154
Query: 84 -TLAAISMSCDNEAIRGFGPLLPGH-LKVDFGDITALEKIFKESGDQIAGFLFEPIQGEA 141
+ + + D + G P + L + DI + ++F G IA F+ EP+
Sbjct: 155 FSASGYNSHFDGQPAPGVLPETTANTLLIRPDDIEGMREVFANHGSDIAAFIAEPVGSHF 214
Query: 142 GVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGG 201
GV D +L+ +L +Y L I DE+ SG R G +V+PD+ L KA
Sbjct: 215 GVTPVSDSFLREGAELARQYGALFILDEVISGF-RVGNHGMQALLDVQPDLTCLAKA-SA 272
Query: 202 GVIPVSAVLADKEVMLCIQPGE-----HGSTFGGNPLASAVAIASLDVIRDEKLAERSAH 256
G +P + ++VM + G H TF GNP+ +A AIA++D I ++ + +
Sbjct: 273 GGLPGGILGGREDVMGVLSRGSDRKVLHQGTFTGNPITAAAAIAAIDTILEDDVCAKIND 332
Query: 257 LGEELRQ---HLF 266
LG+ R+ HLF
Sbjct: 333 LGQFAREAMNHLF 345
>pdb|4AO9|A Chain A, Biochemical Properties And Crystal Structure Of A Novel
Beta-phenylalanine Aminotransferase From Variovorax
Paradoxus
pdb|4AO9|B Chain B, Biochemical Properties And Crystal Structure Of A Novel
Beta-phenylalanine Aminotransferase From Variovorax
Paradoxus
pdb|4AOA|A Chain A, Biochemical Properties And Crystal Structure Of A Novel
Beta-phenylalanine Aminotransferase From Variovorax
Paradoxus
pdb|4AOA|B Chain B, Biochemical Properties And Crystal Structure Of A Novel
Beta-phenylalanine Aminotransferase From Variovorax
Paradoxus
Length = 454
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 68/234 (29%), Positives = 95/234 (40%), Gaps = 36/234 (15%)
Query: 43 NTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGP 102
N+G E AL A + +K IV G +HG L GFG
Sbjct: 150 NSGTEANLMALTAALHFTGRRK--------IVVFSGGYHGGVL-------------GFGA 188
Query: 103 L-LPGHLKVDF-----GDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRD 156
P + DF D + G +IA L EP+QG +G I +L+A+R+
Sbjct: 189 RPSPTTVPFDFLVLPYNDAQTARAQIERHGPEIAVVLVEPMQGASGCIPGQPDFLQALRE 248
Query: 157 LCSKYNILMIADEI-QSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEV 215
++ L++ DE+ S LA G LA+ +R D+ LGK +GGG + A +V
Sbjct: 249 SATQVGALLVFDEVMTSRLAPHG--LANKL-GIRSDLTTLGKYIGGG-MSFGAFGGRADV 304
Query: 216 MLCIQPGE----HGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHL 265
M P H TF N + A A L + + A A GE LR L
Sbjct: 305 MALFDPRTGPLAHSGTFNNNVMTMAAGYAGLTKLFTPEAAGALAERGEALRARL 358
>pdb|4A0G|A Chain A, Structure Of Bifunctional Dapa Aminotransferase-Dtb
Synthetase From Arabidopsis Thaliana In Its Apo Form.
pdb|4A0G|B Chain B, Structure Of Bifunctional Dapa Aminotransferase-Dtb
Synthetase From Arabidopsis Thaliana In Its Apo Form.
pdb|4A0G|C Chain C, Structure Of Bifunctional Dapa Aminotransferase-Dtb
Synthetase From Arabidopsis Thaliana In Its Apo Form.
pdb|4A0G|D Chain D, Structure Of Bifunctional Dapa Aminotransferase-Dtb
Synthetase From Arabidopsis Thaliana In Its Apo Form.
pdb|4A0H|A Chain A, Structure Of Bifunctional Dapa Aminotransferase-Dtb
Synthetase From Arabidopsis Thaliana Bound To 7-Keto
8-Amino Pelargonic Acid (Kapa)
pdb|4A0H|B Chain B, Structure Of Bifunctional Dapa Aminotransferase-Dtb
Synthetase From Arabidopsis Thaliana Bound To 7-Keto
8-Amino Pelargonic Acid (Kapa)
pdb|4A0R|A Chain A, Structure Of Bifunctional Dapa Aminotransferase-Dtb
Synthetase From Arabidopsis Thaliana Bound To
Dethiobiotin (Dtb).
pdb|4A0R|B Chain B, Structure Of Bifunctional Dapa Aminotransferase-Dtb
Synthetase From Arabidopsis Thaliana Bound To
Dethiobiotin (Dtb)
Length = 831
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/217 (21%), Positives = 92/217 (42%), Gaps = 17/217 (7%)
Query: 128 QIAGFLFEP-IQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWE 186
+ + EP I G G+ + + + + + C I +I DE+ +G R G ++
Sbjct: 594 HVGALIIEPVIHGAGGMHMVDPLFQRVLVNECRNRKIPVIFDEVFTGFWRLGVETTTELL 653
Query: 187 EVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGE------HGSTFGGNPLASAVAIA 240
+PD+ K L GG++P++ LA V HG ++ + + A A
Sbjct: 654 GCKPDIACFAKLLTGGMVPLAVTLATDAVFDSFSGDSKLKALLHGHSYSAHAMGCATAAK 713
Query: 241 SLDVIRDEKLAERSAHLGEELRQHLF--KIQQQFPNY--VKEVRGRGLFNAVEFDKTA-- 294
++ +D + G+ LR+ L+ ++ QQ ++ V+ V G A+E A
Sbjct: 714 AIQWFKDPETNHNITSQGKTLRE-LWDEELVQQISSHSAVQRVVVIGTLFALELKADASN 772
Query: 295 ---LPVSAYDICLKMKERGILAKPTHDTIVRLTPPLS 328
+ A + + ++E GI +P + I + P +
Sbjct: 773 SGYASLYAKSLLIMLREDGIFTRPLGNVIYLMCGPCT 809
>pdb|4A0F|A Chain A, Structure Of Selenomethionine Substituted Bifunctional
Dapa Aminotransferase-Dethiobiotin Synthetase From
Arabidopsis Thaliana In Its Apo Form.
pdb|4A0F|B Chain B, Structure Of Selenomethionine Substituted Bifunctional
Dapa Aminotransferase-Dethiobiotin Synthetase From
Arabidopsis Thaliana In Its Apo Form
Length = 831
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 46/209 (22%), Positives = 85/209 (40%), Gaps = 17/209 (8%)
Query: 128 QIAGFLFEP-IQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWE 186
+ + EP I G G + + + + C I +I DE+ +G R G ++
Sbjct: 594 HVGALIIEPVIHGAGGXHXVDPLFQRVLVNECRNRKIPVIFDEVFTGFWRLGVETTTELL 653
Query: 187 EVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGE------HGSTFGGNPLASAVAIA 240
+PD+ K L GG +P++ LA V HG ++ + A A
Sbjct: 654 GCKPDIACFAKLLTGGXVPLAVTLATDAVFDSFSGDSKLKALLHGHSYSAHAXGCATAAK 713
Query: 241 SLDVIRDEKLAERSAHLGEELRQHLF--KIQQQFPNY--VKEVRGRGLFNAVEFDKTA-- 294
++ +D + G+ LR+ L+ ++ QQ ++ V+ V G A+E A
Sbjct: 714 AIQWFKDPETNHNITSQGKTLRE-LWDEELVQQISSHSAVQRVVVIGTLFALELKADASN 772
Query: 295 ---LPVSAYDICLKMKERGILAKPTHDTI 320
+ A + + ++E GI +P + I
Sbjct: 773 SGYASLYAKSLLIXLREDGIFTRPLGNVI 801
>pdb|3T32|A Chain A, Crystal Structure Of A Putative C-S Lyase From Bacillus
Anthracis
pdb|3T32|B Chain B, Crystal Structure Of A Putative C-S Lyase From Bacillus
Anthracis
Length = 383
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 18/24 (75%)
Query: 151 LKAVRDLCSKYNILMIADEIQSGL 174
L + LC+KYN++++ADEI S +
Sbjct: 178 LTKLGSLCTKYNVIVVADEIHSDI 201
>pdb|2FM1|A Chain A, Crystal Structure Of L-allo-threonine Aldolase (tm1744)
From Thermotoga Maritima At 2.25 A Resolution
pdb|2FM1|B Chain B, Crystal Structure Of L-allo-threonine Aldolase (tm1744)
From Thermotoga Maritima At 2.25 A Resolution
pdb|2FM1|C Chain C, Crystal Structure Of L-allo-threonine Aldolase (tm1744)
From Thermotoga Maritima At 2.25 A Resolution
pdb|2FM1|D Chain D, Crystal Structure Of L-allo-threonine Aldolase (tm1744)
From Thermotoga Maritima At 2.25 A Resolution
Length = 355
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 25/51 (49%)
Query: 286 NAVEFDKTALPVSAYDICLKMKERGILAKPTHDTIVRLTPPLSISSNELQE 336
N V L V+A+ ++ G+LA DT +RL +S N+++E
Sbjct: 292 NMVILRTDNLKVNAHGFIEALRNSGVLANAVSDTEIRLVTHKDVSRNDIEE 342
>pdb|1LW4|A Chain A, X-Ray Structure Of L-Threonine Aldolase (Low-Specificity)
In Complex With L-Allo-Threonine
pdb|1LW4|B Chain B, X-Ray Structure Of L-Threonine Aldolase (Low-Specificity)
In Complex With L-Allo-Threonine
pdb|1LW4|C Chain C, X-Ray Structure Of L-Threonine Aldolase (Low-Specificity)
In Complex With L-Allo-Threonine
pdb|1LW4|D Chain D, X-Ray Structure Of L-Threonine Aldolase (Low-Specificity)
In Complex With L-Allo-Threonine
pdb|1LW5|A Chain A, X-ray Structure Of L-threonine Aldolase (low-specificity)
In Complex With Glycine
pdb|1LW5|B Chain B, X-ray Structure Of L-threonine Aldolase (low-specificity)
In Complex With Glycine
pdb|1LW5|C Chain C, X-ray Structure Of L-threonine Aldolase (low-specificity)
In Complex With Glycine
pdb|1LW5|D Chain D, X-ray Structure Of L-threonine Aldolase (low-specificity)
In Complex With Glycine
Length = 347
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 25/51 (49%)
Query: 286 NAVEFDKTALPVSAYDICLKMKERGILAKPTHDTIVRLTPPLSISSNELQE 336
N V L V+A+ ++ G+LA DT +RL +S N+++E
Sbjct: 284 NXVILRTDNLKVNAHGFIEALRNSGVLANAVSDTEIRLVTHKDVSRNDIEE 334
>pdb|1JG8|A Chain A, Crystal Structure Of Threonine Aldolase (Low-Specificity)
pdb|1JG8|B Chain B, Crystal Structure Of Threonine Aldolase (Low-Specificity)
pdb|1JG8|C Chain C, Crystal Structure Of Threonine Aldolase (Low-Specificity)
pdb|1JG8|D Chain D, Crystal Structure Of Threonine Aldolase (Low-Specificity)
pdb|1M6S|A Chain A, Crystal Structure Of Threonine Aldolase
pdb|1M6S|B Chain B, Crystal Structure Of Threonine Aldolase
pdb|1M6S|C Chain C, Crystal Structure Of Threonine Aldolase
pdb|1M6S|D Chain D, Crystal Structure Of Threonine Aldolase
Length = 347
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 25/51 (49%)
Query: 286 NAVEFDKTALPVSAYDICLKMKERGILAKPTHDTIVRLTPPLSISSNELQE 336
N V L V+A+ ++ G+LA DT +RL +S N+++E
Sbjct: 284 NMVILRTDNLKVNAHGFIEALRNSGVLANAVSDTEIRLVTHKDVSRNDIEE 334
>pdb|3BNW|A Chain A, Crystal Structure Of Riboflavin Kinase From Trypanosoma
Brucei
pdb|3BNW|B Chain B, Crystal Structure Of Riboflavin Kinase From Trypanosoma
Brucei
Length = 181
Score = 28.5 bits (62), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 34/75 (45%), Gaps = 21/75 (28%)
Query: 193 VILGKALGGGVI--PVSAVLADKEVMLCIQ----------------PGEHGSTFGGNPLA 234
V+ GK GG + P + + DK+VM C+Q PG+ +FG P A
Sbjct: 24 VVHGKGRGGSQLGFPTANIGLDKDVMECLQPYKNLVVYGWGTVSQVPGKERESFGPYPFA 83
Query: 235 SAVAIASLDVIRDEK 249
+++ ++ DEK
Sbjct: 84 ASIG---FNMQFDEK 95
>pdb|3L8A|A Chain A, Crystal Structure Of Metc From Streptococcus Mutans
pdb|3L8A|B Chain B, Crystal Structure Of Metc From Streptococcus Mutans
Length = 421
Score = 28.5 bits (62), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 41/87 (47%), Gaps = 6/87 (6%)
Query: 93 DNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLK 152
D+ + ++ G ++DF LEK ++ +I +L G + D +K
Sbjct: 164 DHRLVENSLQIINGRFEIDF---EQLEKDIIDNNVKI--YLLCSPHNPGGRVWDNDDLIK 218
Query: 153 AVRDLCSKYNILMIADEIQSGLARSGR 179
+ +LC K+ +++++DEI LA G
Sbjct: 219 -IAELCKKHGVILVSDEIHQDLALFGN 244
>pdb|3OLZ|A Chain A, Crystal Structure Of The Gluk3 (Glur7) Atd Dimer At 2.75
Angstrom Resolution
pdb|3OLZ|B Chain B, Crystal Structure Of The Gluk3 (Glur7) Atd Dimer At 2.75
Angstrom Resolution
Length = 398
Score = 28.5 bits (62), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 14/51 (27%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Query: 262 RQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDI-CLKMKERGI 311
R ++ +F N++KE + GL + F+KT+ + +D+ + +KE G+
Sbjct: 321 RHKAWRFGGRFMNFIKEAQWEGLTGRIVFNKTSGLRTDFDLDIISLKEDGL 371
>pdb|3DZZ|A Chain A, Crystal Structure Of A Putative Plp-Dependent
Aminotransferase (Lbul_1103) From Lactobacillus
Delbrueckii Subsp. At 1.61 A Resolution
pdb|3DZZ|B Chain B, Crystal Structure Of A Putative Plp-Dependent
Aminotransferase (Lbul_1103) From Lactobacillus
Delbrueckii Subsp. At 1.61 A Resolution
Length = 391
Score = 28.5 bits (62), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 10/24 (41%), Positives = 18/24 (75%)
Query: 151 LKAVRDLCSKYNILMIADEIQSGL 174
+K + +LC+K+ +L+I+DEI L
Sbjct: 182 VKRIAELCAKHQVLLISDEIHGDL 205
>pdb|3MQ0|A Chain A, Crystal Structure Of Agobacterium Tumefaciens Repressor
Blcr
pdb|3MQ0|B Chain B, Crystal Structure Of Agobacterium Tumefaciens Repressor
Blcr
Length = 275
Score = 28.1 bits (61), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 28/50 (56%), Gaps = 6/50 (12%)
Query: 213 KEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELR 262
+E MLCI G+ A++ IA + +IR E E+ A+LGEELR
Sbjct: 215 REGMLCI-----GAAIRDYSGAASAGIA-ISLIRSEASDEKIAYLGEELR 258
>pdb|2A3L|A Chain A, X-Ray Structure Of Adenosine 5'-Monophosphate Deaminase
From Arabidopsis Thaliana In Complex With Coformycin
5'-Phosphate
Length = 701
Score = 28.1 bits (61), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 20/34 (58%)
Query: 314 KPTHDTIVRLTPPLSISSNELQEGSKALHDVLEL 347
+P +T VRL PL + +++ E K L + LEL
Sbjct: 86 EPEQETFVRLNVPLEVPTSDEVEAYKCLQECLEL 119
>pdb|2CWX|A Chain A, Crystal Structure Of Octameric Ribulose-1,5-bisphosphate
Carboxylase/oxygenase (rubisco) From Pyrococcus
Horikoshii Ot3 (form- 1 Crystal)
pdb|2CWX|E Chain E, Crystal Structure Of Octameric Ribulose-1,5-bisphosphate
Carboxylase/oxygenase (rubisco) From Pyrococcus
Horikoshii Ot3 (form- 1 Crystal)
pdb|2CXE|A Chain A, Crystal Structure Of Octameric Ribulose-1,5-bisphosphate
Carboxylase/oxygenase (rubisco) From Pyrococcus
Horikoshii Ot3 (form- 2 Crystal)
pdb|2CXE|B Chain B, Crystal Structure Of Octameric Ribulose-1,5-bisphosphate
Carboxylase/oxygenase (rubisco) From Pyrococcus
Horikoshii Ot3 (form- 2 Crystal)
pdb|2CXE|C Chain C, Crystal Structure Of Octameric Ribulose-1,5-bisphosphate
Carboxylase/oxygenase (rubisco) From Pyrococcus
Horikoshii Ot3 (form- 2 Crystal)
pdb|2CXE|D Chain D, Crystal Structure Of Octameric Ribulose-1,5-bisphosphate
Carboxylase/oxygenase (rubisco) From Pyrococcus
Horikoshii Ot3 (form- 2 Crystal)
pdb|2D69|A Chain A, Crystal Structure Of The Complex Of Sulfate Ion And
Octameric Ribulose-1,5-Bisphosphate CarboxylaseOXYGENASE
(RUBISCO) FROM Pyrococcus Horikoshii Ot3 (Form-2
Crystal)
pdb|2D69|B Chain B, Crystal Structure Of The Complex Of Sulfate Ion And
Octameric Ribulose-1,5-Bisphosphate CarboxylaseOXYGENASE
(RUBISCO) FROM Pyrococcus Horikoshii Ot3 (Form-2
Crystal)
pdb|2D69|D Chain D, Crystal Structure Of The Complex Of Sulfate Ion And
Octameric Ribulose-1,5-Bisphosphate CarboxylaseOXYGENASE
(RUBISCO) FROM Pyrococcus Horikoshii Ot3 (Form-2
Crystal)
pdb|2D69|E Chain E, Crystal Structure Of The Complex Of Sulfate Ion And
Octameric Ribulose-1,5-Bisphosphate CarboxylaseOXYGENASE
(RUBISCO) FROM Pyrococcus Horikoshii Ot3 (Form-2
Crystal)
Length = 430
Score = 28.1 bits (61), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 40/96 (41%), Gaps = 9/96 (9%)
Query: 174 LARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPG------EHGST 227
+ R L S WE +RP + L G++P L K+ L IQ G G
Sbjct: 326 IKRINDFLLSKWEHIRPVFPVASGGLHPGLMPELIRLFGKD--LVIQAGGGVMGHPDGPR 383
Query: 228 FGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQ 263
G L A+ A V DEK A+ S L + LR+
Sbjct: 384 AGAKALRDAIDAAIEGVDLDEK-AKSSPELKKSLRE 418
>pdb|4DGT|A Chain A, Crystal Structure Of Plp-Bound Putative Aminotransferase
From Clostridium Difficile 630 Crystallized With
Magnesium Formate
pdb|4DGT|B Chain B, Crystal Structure Of Plp-Bound Putative Aminotransferase
From Clostridium Difficile 630 Crystallized With
Magnesium Formate
pdb|4DQ6|A Chain A, Crystal Structure Of Plp-Bound Putative Aminotransferase
From Clostridium Difficile 630
pdb|4DQ6|B Chain B, Crystal Structure Of Plp-Bound Putative Aminotransferase
From Clostridium Difficile 630
Length = 391
Score = 28.1 bits (61), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 18/24 (75%)
Query: 151 LKAVRDLCSKYNILMIADEIQSGL 174
LK + D+C K+N+ +I+DEI S +
Sbjct: 186 LKKLGDICLKHNVKIISDEIHSDI 209
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.138 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,252,552
Number of Sequences: 62578
Number of extensions: 468927
Number of successful extensions: 1437
Number of sequences better than 100.0: 93
Number of HSP's better than 100.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 1182
Number of HSP's gapped (non-prelim): 95
length of query: 374
length of database: 14,973,337
effective HSP length: 100
effective length of query: 274
effective length of database: 8,715,537
effective search space: 2388057138
effective search space used: 2388057138
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)