Query 017259
Match_columns 374
No_of_seqs 137 out of 1426
Neff 9.9
Searched_HMMs 29240
Date Mon Mar 25 11:33:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017259.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017259hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4atq_A 4-aminobutyrate transam 100.0 2.3E-47 8E-52 362.2 37.0 336 2-346 87-453 (456)
2 4e3q_A Pyruvate transaminase; 100.0 2.5E-47 8.6E-52 363.2 34.5 341 2-349 90-468 (473)
3 3i5t_A Aminotransferase; pyrid 100.0 3.6E-47 1.2E-51 366.1 34.9 342 2-350 77-455 (476)
4 1z7d_A Ornithine aminotransfer 100.0 4.2E-46 1.4E-50 354.9 35.8 340 2-349 88-429 (433)
5 3tfu_A Adenosylmethionine-8-am 100.0 1.5E-46 5.2E-51 359.9 30.8 339 2-349 98-453 (457)
6 2oat_A Ornithine aminotransfer 100.0 1.3E-45 4.4E-50 352.1 36.1 338 2-346 99-437 (439)
7 3hmu_A Aminotransferase, class 100.0 3.5E-46 1.2E-50 358.7 30.6 340 2-349 78-452 (472)
8 3nx3_A Acoat, acetylornithine 100.0 2.5E-45 8.7E-50 345.7 34.9 334 2-346 59-393 (395)
9 3gju_A Putative aminotransfera 100.0 3.3E-45 1.1E-49 351.5 35.0 343 2-349 74-456 (460)
10 3dod_A Adenosylmethionine-8-am 100.0 1.5E-45 5.3E-50 352.8 32.5 344 2-351 67-445 (448)
11 4a6r_A Omega transaminase; tra 100.0 4.5E-45 1.5E-49 350.6 30.9 342 2-349 73-449 (459)
12 4ao9_A Beta-phenylalanine amin 100.0 1.6E-44 5.5E-49 341.2 33.5 322 2-349 110-446 (454)
13 3oks_A 4-aminobutyrate transam 100.0 2.7E-44 9.2E-49 344.2 35.3 335 2-346 84-449 (451)
14 3n5m_A Adenosylmethionine-8-am 100.0 3.9E-44 1.3E-48 343.5 34.6 340 2-346 72-450 (452)
15 4ffc_A 4-aminobutyrate aminotr 100.0 3.2E-44 1.1E-48 343.8 33.9 335 2-349 87-449 (453)
16 2pb2_A Acetylornithine/succiny 100.0 3.3E-44 1.1E-48 340.7 32.3 337 2-346 80-416 (420)
17 3i4j_A Aminotransferase, class 100.0 5.9E-44 2E-48 340.1 32.8 343 2-349 52-428 (430)
18 3dxv_A Alpha-amino-epsilon-cap 100.0 4.5E-43 1.5E-47 334.9 32.1 338 2-351 66-427 (439)
19 3ruy_A Ornithine aminotransfer 100.0 8.3E-43 2.8E-47 328.2 33.2 333 2-346 59-392 (392)
20 2cjg_A L-lysine-epsilon aminot 100.0 1.6E-42 5.6E-47 331.7 33.3 335 3-346 80-446 (449)
21 4adb_A Succinylornithine trans 100.0 8.6E-42 3E-46 322.6 33.3 340 2-350 62-401 (406)
22 3l44_A Glutamate-1-semialdehyd 100.0 1.2E-41 4E-46 324.7 34.0 332 2-349 78-430 (434)
23 3a8u_X Omega-amino acid--pyruv 100.0 1.3E-41 4.5E-46 325.7 30.8 341 2-349 73-447 (449)
24 1zod_A DGD, 2,2-dialkylglycine 100.0 4.7E-41 1.6E-45 320.3 34.1 334 2-346 66-430 (433)
25 4a0g_A Adenosylmethionine-8-am 100.0 1.2E-42 4.3E-47 351.4 23.2 344 2-349 404-828 (831)
26 3k28_A Glutamate-1-semialdehyd 100.0 4E-41 1.4E-45 320.4 32.2 331 2-349 76-427 (429)
27 4e77_A Glutamate-1-semialdehyd 100.0 1.2E-40 4E-45 317.2 33.8 330 2-346 76-427 (429)
28 1s0a_A Adenosylmethionine-8-am 100.0 1.8E-40 6E-45 316.0 34.0 334 2-349 66-424 (429)
29 3fq8_A Glutamate-1-semialdehyd 100.0 2.5E-40 8.6E-45 314.8 35.0 329 2-346 75-425 (427)
30 2ord_A Acoat, acetylornithine 100.0 3.7E-40 1.3E-44 310.6 33.1 333 2-346 63-395 (397)
31 2eo5_A 419AA long hypothetical 100.0 2.5E-40 8.7E-45 313.9 31.0 323 2-349 66-418 (419)
32 2epj_A Glutamate-1-semialdehyd 100.0 1.7E-39 5.8E-44 309.7 32.3 332 2-349 79-431 (434)
33 1sff_A 4-aminobutyrate aminotr 100.0 1E-38 3.5E-43 303.4 34.0 337 2-349 64-424 (426)
34 1ohv_A 4-aminobutyrate aminotr 100.0 7.6E-39 2.6E-43 307.7 32.1 318 20-349 109-471 (472)
35 2e7u_A Glutamate-1-semialdehyd 100.0 1.7E-38 5.7E-43 301.9 32.4 328 2-345 75-424 (424)
36 1vef_A Acetylornithine/acetyl- 100.0 9.2E-39 3.2E-43 300.8 29.6 325 2-346 68-395 (395)
37 2eh6_A Acoat, acetylornithine 100.0 8.3E-38 2.8E-42 292.2 32.2 324 2-345 51-375 (375)
38 2cy8_A D-phgat, D-phenylglycin 100.0 2.4E-38 8.3E-43 303.3 28.2 332 2-353 80-439 (453)
39 2yky_A Beta-transaminase; tran 100.0 4.4E-42 1.5E-46 326.8 0.0 323 1-349 122-460 (465)
40 3l8a_A METC, putative aminotra 100.0 3.7E-33 1.3E-37 264.8 21.4 315 2-346 81-420 (421)
41 3op7_A Aminotransferase class 100.0 7.3E-32 2.5E-36 251.9 25.2 310 3-350 47-372 (375)
42 3aow_A Putative uncharacterize 100.0 5.1E-32 1.7E-36 258.8 23.0 294 21-346 118-443 (448)
43 1yiz_A Kynurenine aminotransfe 100.0 1.9E-31 6.7E-36 253.6 23.6 301 23-346 79-427 (429)
44 2w8t_A SPT, serine palmitoyltr 100.0 4.2E-31 1.4E-35 251.1 25.9 309 2-350 85-416 (427)
45 3euc_A Histidinol-phosphate am 100.0 7E-31 2.4E-35 244.5 25.6 305 2-346 50-366 (367)
46 4dq6_A Putative pyridoxal phos 100.0 2.7E-31 9.1E-36 249.3 22.7 315 2-346 52-391 (391)
47 3dzz_A Putative pyridoxal 5'-p 100.0 5.1E-31 1.7E-35 247.4 24.3 320 2-349 47-389 (391)
48 2zc0_A Alanine glyoxylate tran 100.0 3.5E-31 1.2E-35 250.0 22.9 315 2-349 56-404 (407)
49 3b46_A Aminotransferase BNA3; 100.0 2.6E-31 8.8E-36 254.1 20.1 300 21-343 99-442 (447)
50 3tqx_A 2-amino-3-ketobutyrate 100.0 6E-31 2.1E-35 247.5 22.2 308 2-349 64-396 (399)
51 3nra_A Aspartate aminotransfer 100.0 5.9E-32 2E-36 255.2 15.1 320 2-349 60-405 (407)
52 3fdb_A Beta C-S lyase, putativ 100.0 4.5E-31 1.5E-35 246.6 20.9 310 2-349 43-376 (377)
53 1gd9_A Aspartate aminotransfer 100.0 6.6E-31 2.3E-35 246.6 21.8 295 22-349 64-386 (389)
54 3ffh_A Histidinol-phosphate am 100.0 3.6E-30 1.2E-34 239.4 26.0 298 3-345 49-363 (363)
55 2r2n_A Kynurenine/alpha-aminoa 100.0 1.8E-30 6.3E-35 246.6 24.4 306 13-346 74-422 (425)
56 3kax_A Aminotransferase, class 100.0 1.1E-30 3.8E-35 244.4 22.0 316 2-345 44-382 (383)
57 2zyj_A Alpha-aminodipate amino 100.0 2.6E-31 8.9E-36 250.1 17.5 313 2-349 54-393 (397)
58 3dyd_A Tyrosine aminotransfera 100.0 1.7E-30 5.9E-35 246.9 22.7 318 2-349 78-424 (427)
59 3ly1_A Putative histidinol-pho 100.0 3.1E-30 1.1E-34 238.9 23.3 286 18-346 48-350 (354)
60 3g0t_A Putative aminotransfera 100.0 1.9E-30 6.6E-35 247.2 22.1 289 23-346 84-435 (437)
61 1d2f_A MALY protein; aminotran 100.0 4.2E-30 1.4E-34 241.3 24.1 295 22-346 69-387 (390)
62 1vp4_A Aminotransferase, putat 100.0 5.2E-31 1.8E-35 250.4 18.0 298 22-349 86-418 (425)
63 2dou_A Probable N-succinyldiam 100.0 4.5E-31 1.5E-35 246.7 16.6 289 22-345 64-375 (376)
64 1v2d_A Glutamine aminotransfer 100.0 3E-30 1E-34 241.6 21.8 285 21-349 61-371 (381)
65 2o1b_A Aminotransferase, class 100.0 9.4E-31 3.2E-35 247.0 18.5 293 22-346 86-401 (404)
66 3fvs_A Kynurenine--oxoglutarat 100.0 2.3E-30 8E-35 245.5 21.3 307 21-346 71-420 (422)
67 3kki_A CAI-1 autoinducer synth 100.0 2.4E-30 8.4E-35 244.5 21.2 304 2-349 80-404 (409)
68 1c7n_A Cystalysin; transferase 100.0 4E-30 1.4E-34 242.1 22.4 298 23-350 68-394 (399)
69 3h14_A Aminotransferase, class 100.0 1.8E-30 6.2E-35 243.9 20.0 286 23-350 70-383 (391)
70 1j32_A Aspartate aminotransfer 100.0 2.6E-30 8.9E-35 242.5 20.6 293 23-346 73-385 (388)
71 3ftb_A Histidinol-phosphate am 100.0 2.4E-29 8.2E-34 233.5 25.6 300 2-346 46-359 (361)
72 3piu_A 1-aminocyclopropane-1-c 100.0 5.1E-30 1.7E-34 244.3 21.4 297 21-350 86-433 (435)
73 1u08_A Hypothetical aminotrans 100.0 4.5E-30 1.5E-34 240.7 20.7 290 23-343 69-385 (386)
74 1o4s_A Aspartate aminotransfer 100.0 2.3E-30 7.8E-35 243.1 18.6 290 22-346 79-387 (389)
75 3jtx_A Aminotransferase; NP_28 100.0 2.7E-30 9.1E-35 243.0 18.6 298 20-345 69-395 (396)
76 2o0r_A RV0858C (N-succinyldiam 100.0 3.4E-30 1.2E-34 243.7 18.7 296 23-346 64-394 (411)
77 3ele_A Amino transferase; RER0 100.0 5.6E-30 1.9E-34 241.0 20.1 293 21-349 80-396 (398)
78 3a2b_A Serine palmitoyltransfe 100.0 1.7E-29 5.8E-34 237.8 23.3 307 2-349 64-392 (398)
79 3cq5_A Histidinol-phosphate am 100.0 7.2E-29 2.5E-33 231.2 27.2 304 2-346 50-366 (369)
80 2z61_A Probable aspartate amin 100.0 2.3E-30 7.8E-35 241.4 17.0 280 22-346 67-369 (370)
81 2x5d_A Probable aminotransfera 100.0 4.1E-30 1.4E-34 243.2 18.9 302 20-350 74-399 (412)
82 3ezs_A Aminotransferase ASPB; 100.0 4.6E-30 1.6E-34 239.7 19.1 281 21-346 63-373 (376)
83 1fc4_A 2-amino-3-ketobutyrate 100.0 9E-30 3.1E-34 239.8 20.6 290 20-349 89-397 (401)
84 1b5p_A Protein (aspartate amin 100.0 1.1E-29 3.6E-34 238.2 20.9 295 21-346 72-383 (385)
85 1iay_A ACC synthase 2, 1-amino 100.0 2E-29 6.7E-34 239.7 22.8 297 23-346 85-425 (428)
86 2x5f_A Aspartate_tyrosine_phen 100.0 1.6E-29 5.5E-34 240.4 20.8 302 22-349 89-429 (430)
87 1xi9_A Putative transaminase; 100.0 8.6E-30 3E-34 240.5 18.7 294 23-349 80-403 (406)
88 1bs0_A Protein (8-amino-7-oxon 100.0 3.7E-29 1.3E-33 234.3 22.6 303 2-344 60-383 (384)
89 3e2y_A Kynurenine-oxoglutarate 100.0 3.3E-29 1.1E-33 236.6 22.0 302 23-343 63-408 (410)
90 3hdo_A Histidinol-phosphate am 100.0 2.4E-29 8.2E-34 233.6 20.1 300 2-346 46-353 (360)
91 3get_A Histidinol-phosphate am 100.0 4.4E-29 1.5E-33 232.2 21.8 289 18-346 62-365 (365)
92 2dr1_A PH1308 protein, 386AA l 100.0 1.5E-28 5E-33 230.1 24.8 294 20-349 52-379 (386)
93 2e7j_A SEP-tRNA:Cys-tRNA synth 100.0 8.5E-30 2.9E-34 237.3 16.3 289 17-349 49-370 (371)
94 1fg7_A Histidinol phosphate am 100.0 1.1E-28 3.9E-33 228.8 22.6 287 18-343 55-353 (356)
95 3rq1_A Aminotransferase class 100.0 4.8E-29 1.7E-33 236.2 20.1 295 22-350 85-416 (418)
96 3qgu_A LL-diaminopimelate amin 100.0 2.2E-29 7.4E-34 240.9 16.9 317 2-346 89-438 (449)
97 2gb3_A Aspartate aminotransfer 100.0 2E-29 7E-34 238.2 16.4 286 23-349 81-402 (409)
98 1bw0_A TAT, protein (tyrosine 100.0 5.2E-29 1.8E-33 235.8 19.2 299 22-349 76-413 (416)
99 3if2_A Aminotransferase; YP_26 100.0 7.4E-29 2.5E-33 236.8 20.4 302 21-349 83-440 (444)
100 1lc5_A COBD, L-threonine-O-3-p 100.0 1.1E-28 3.7E-33 229.5 20.6 292 18-349 56-360 (364)
101 3ez1_A Aminotransferase MOCR f 100.0 4.2E-29 1.4E-33 237.0 17.2 307 20-349 69-415 (423)
102 1elu_A L-cysteine/L-cystine C- 100.0 9.2E-29 3.1E-33 231.8 19.3 282 21-343 59-387 (390)
103 3ppl_A Aspartate aminotransfer 100.0 8.5E-29 2.9E-33 235.2 19.3 302 20-349 77-420 (427)
104 1kmj_A Selenocysteine lyase; p 100.0 2.7E-28 9.3E-33 229.8 21.7 296 20-349 66-405 (406)
105 3f9t_A TDC, L-tyrosine decarbo 100.0 3.1E-28 1.1E-32 228.5 21.8 290 20-346 68-396 (397)
106 3g7q_A Valine-pyruvate aminotr 100.0 1E-28 3.4E-33 233.8 18.5 303 20-349 74-413 (417)
107 3kgw_A Alanine-glyoxylate amin 100.0 2.3E-28 8E-33 229.2 20.1 296 20-351 55-390 (393)
108 3d6k_A Putative aminotransfera 100.0 1.8E-28 6.1E-33 232.7 18.7 306 22-349 77-418 (422)
109 2bwn_A 5-aminolevulinate synth 100.0 8.5E-28 2.9E-32 226.4 23.2 307 2-346 67-398 (401)
110 3nnk_A Ureidoglycine-glyoxylat 100.0 7.1E-28 2.4E-32 227.4 20.8 288 21-349 46-390 (411)
111 3ei9_A LL-diaminopimelate amin 100.0 2.3E-28 7.7E-33 232.6 17.1 319 2-346 76-426 (432)
112 3b1d_A Betac-S lyase; HET: PLP 99.9 9.1E-31 3.1E-35 246.0 0.0 299 20-346 69-391 (392)
113 3zrp_A Serine-pyruvate aminotr 100.0 1.4E-27 4.7E-32 223.3 21.4 287 20-349 34-363 (384)
114 1t3i_A Probable cysteine desul 100.0 2.2E-27 7.5E-32 224.6 23.0 294 21-351 72-415 (420)
115 1vjo_A Alanine--glyoxylate ami 100.0 2E-27 6.9E-32 223.1 21.8 289 21-346 67-393 (393)
116 3asa_A LL-diaminopimelate amin 100.0 2.7E-28 9.2E-33 229.8 15.6 305 2-346 53-391 (400)
117 1m32_A 2-aminoethylphosphonate 100.0 1.1E-26 3.7E-31 215.6 25.6 291 21-346 37-363 (366)
118 3f0h_A Aminotransferase; RER07 100.0 3.5E-27 1.2E-31 220.1 21.8 288 21-346 52-372 (376)
119 2q7w_A Aspartate aminotransfer 100.0 2.5E-28 8.6E-33 229.5 14.1 290 19-344 67-395 (396)
120 1ajs_A Aspartate aminotransfer 100.0 8.2E-28 2.8E-32 227.3 17.6 304 19-349 72-411 (412)
121 3t18_A Aminotransferase class 100.0 2.9E-27 1E-31 223.6 20.8 291 20-346 82-408 (413)
122 3fkd_A L-threonine-O-3-phospha 100.0 1.2E-26 4.2E-31 214.5 22.4 280 18-346 47-340 (350)
123 1qz9_A Kynureninase; kynurenin 100.0 3.6E-26 1.2E-30 216.2 26.1 296 20-350 70-403 (416)
124 3isl_A Purine catabolism prote 99.9 5.7E-27 2E-31 221.6 20.4 289 20-349 43-390 (416)
125 2ay1_A Aroat, aromatic amino a 99.9 1.1E-27 3.8E-32 225.0 15.2 289 20-344 68-392 (394)
126 3lvm_A Cysteine desulfurase; s 99.9 8.5E-27 2.9E-31 221.0 20.7 291 21-352 68-402 (423)
127 2rfv_A Methionine gamma-lyase; 99.9 5.2E-27 1.8E-31 220.9 19.1 297 13-344 56-396 (398)
128 3p1t_A Putative histidinol-pho 99.9 2.1E-26 7.3E-31 211.6 21.8 281 17-346 47-335 (337)
129 4f4e_A Aromatic-amino-acid ami 99.9 3E-27 1E-31 224.1 16.4 290 21-346 96-420 (420)
130 3cai_A Possible aminotransfera 99.9 3.1E-26 1.1E-30 216.0 23.2 285 20-343 68-404 (406)
131 3f6t_A Aspartate aminotransfer 99.9 1.2E-26 4.2E-31 225.9 20.4 308 20-349 141-525 (533)
132 1iug_A Putative aspartate amin 99.9 8.3E-27 2.8E-31 215.4 18.1 287 21-349 34-348 (352)
133 1eg5_A Aminotransferase; PLP-d 99.9 3.5E-26 1.2E-30 213.7 22.1 294 21-351 44-378 (384)
134 2z9v_A Aspartate aminotransfer 99.9 2.9E-26 1E-30 215.0 21.6 289 21-349 42-371 (392)
135 2ch1_A 3-hydroxykynurenine tra 99.9 2.6E-26 8.9E-31 215.7 20.8 295 21-352 51-386 (396)
136 1yaa_A Aspartate aminotransfer 99.9 1.3E-26 4.3E-31 219.2 17.7 298 20-346 72-409 (412)
137 1e5e_A MGL, methionine gamma-l 99.9 4.1E-26 1.4E-30 215.0 20.9 289 18-349 59-395 (404)
138 1cs1_A CGS, protein (cystathio 99.9 4.1E-26 1.4E-30 213.9 19.7 293 13-345 44-384 (386)
139 2huf_A Alanine glyoxylate amin 99.9 5.2E-26 1.8E-30 213.4 20.1 294 20-349 51-383 (393)
140 3e9k_A Kynureninase; kynurenin 99.9 9.5E-26 3.3E-30 216.6 22.0 302 21-349 111-461 (465)
141 3fsl_A Aromatic-amino-acid ami 99.9 2.8E-26 9.6E-31 215.6 17.8 288 21-344 70-396 (397)
142 1jg8_A L-ALLO-threonine aldola 99.9 7.4E-26 2.5E-30 208.9 19.9 295 18-346 35-344 (347)
143 4hvk_A Probable cysteine desul 99.9 1.1E-25 3.8E-30 209.9 20.9 290 20-351 42-375 (382)
144 1uu1_A Histidinol-phosphate am 99.9 3E-26 1E-30 210.7 16.5 274 18-344 53-334 (335)
145 3qhx_A Cystathionine gamma-syn 99.9 7E-26 2.4E-30 212.6 18.6 287 13-341 58-391 (392)
146 3mad_A Sphingosine-1-phosphate 99.9 1.2E-25 4E-30 218.5 20.8 293 24-351 142-471 (514)
147 2yrr_A Aminotransferase, class 99.9 3.4E-26 1.1E-30 211.3 15.2 284 21-346 33-351 (353)
148 3tcm_A Alanine aminotransferas 99.9 1.5E-25 5.2E-30 216.8 20.3 303 21-349 134-494 (500)
149 3ihj_A Alanine aminotransferas 99.9 1.6E-25 5.5E-30 216.3 20.1 300 20-349 132-493 (498)
150 1gc0_A Methionine gamma-lyase; 99.9 5.3E-25 1.8E-29 207.2 22.5 294 13-344 57-397 (398)
151 4eb5_A Probable cysteine desul 99.9 4.2E-25 1.4E-29 206.3 20.5 294 21-351 43-375 (382)
152 3ndn_A O-succinylhomoserine su 99.9 3.1E-26 1E-30 216.1 12.7 293 12-345 72-413 (414)
153 1svv_A Threonine aldolase; str 99.9 2E-25 6.7E-30 206.7 17.4 291 16-346 44-356 (359)
154 3ke3_A Putative serine-pyruvat 99.9 1.5E-25 5.2E-30 209.5 16.8 301 21-349 35-376 (379)
155 1mdo_A ARNB aminotransferase; 99.9 6.3E-25 2.2E-29 206.1 20.2 301 2-346 24-384 (393)
156 3meb_A Aspartate aminotransfer 99.9 3E-25 1E-29 212.0 17.7 300 20-349 93-444 (448)
157 3vax_A Putative uncharacterize 99.9 9.6E-26 3.3E-30 212.1 13.7 286 20-346 62-398 (400)
158 1v72_A Aldolase; PLP-dependent 99.9 2.9E-25 1E-29 205.3 16.6 288 19-346 41-351 (356)
159 7aat_A Aspartate aminotransfer 99.9 3.9E-25 1.3E-29 208.2 17.6 296 22-346 72-401 (401)
160 1pff_A Methionine gamma-lyase; 99.9 1.3E-24 4.4E-29 199.3 20.6 281 25-344 2-330 (331)
161 2oga_A Transaminase; PLP-depen 99.9 6.7E-25 2.3E-29 206.5 19.1 300 2-349 48-396 (399)
162 3dr4_A Putative perosamine syn 99.9 3.2E-25 1.1E-29 208.1 16.1 288 19-345 54-390 (391)
163 2ez2_A Beta-tyrosinase, tyrosi 99.9 1.8E-24 6.2E-29 207.1 21.1 313 19-352 73-434 (456)
164 1ax4_A Tryptophanase; tryptoph 99.9 1.9E-24 6.3E-29 207.6 21.1 314 19-352 74-444 (467)
165 2cb1_A O-acetyl homoserine sul 99.9 2.6E-24 8.9E-29 203.3 21.6 286 12-343 47-411 (412)
166 3uwc_A Nucleotide-sugar aminot 99.9 8.2E-25 2.8E-29 203.9 17.7 284 17-346 34-369 (374)
167 3mc6_A Sphingosine-1-phosphate 99.9 9.3E-25 3.2E-29 211.4 18.6 301 23-352 109-440 (497)
168 1b9h_A AHBA synthase, protein 99.9 2.9E-24 9.8E-29 201.3 21.3 304 2-346 21-386 (388)
169 3frk_A QDTB; aminotransferase, 99.9 8.2E-25 2.8E-29 204.0 17.5 283 18-346 33-366 (373)
170 2bkw_A Alanine-glyoxylate amin 99.9 2.7E-24 9.1E-29 201.1 20.9 284 23-346 40-382 (385)
171 4eu1_A Mitochondrial aspartate 99.9 5E-25 1.7E-29 208.1 15.5 297 20-346 78-409 (409)
172 3nyt_A Aminotransferase WBPE; 99.9 1.1E-24 3.8E-29 202.7 17.5 285 18-344 32-360 (367)
173 2zy4_A L-aspartate beta-decarb 99.9 1.2E-24 4.1E-29 212.0 18.2 312 18-346 139-520 (546)
174 1ibj_A CBL, cystathionine beta 99.9 3.2E-25 1.1E-29 211.8 13.9 289 17-349 129-462 (464)
175 2dkj_A Serine hydroxymethyltra 99.9 4.1E-24 1.4E-28 201.4 20.3 287 28-348 76-387 (407)
176 1qgn_A Protein (cystathionine 99.9 3.3E-24 1.1E-28 203.4 18.8 291 12-346 105-443 (445)
177 3a9z_A Selenocysteine lyase; P 99.9 7.6E-24 2.6E-28 201.3 21.0 301 22-349 62-428 (432)
178 3acz_A Methionine gamma-lyase; 99.9 2.9E-24 1E-28 201.4 17.9 289 13-346 51-387 (389)
179 1wyu_B Glycine dehydrogenase s 99.9 1.1E-23 3.9E-28 202.4 21.9 292 22-348 108-440 (474)
180 1n8p_A Cystathionine gamma-lya 99.9 1.7E-24 5.8E-29 203.1 15.5 294 13-345 47-392 (393)
181 2oqx_A Tryptophanase; lyase, p 99.9 1.6E-23 5.6E-28 201.1 22.5 320 19-351 72-444 (467)
182 1o69_A Aminotransferase; struc 99.9 4.8E-23 1.6E-27 193.5 24.2 294 21-346 32-385 (394)
183 3pj0_A LMO0305 protein; struct 99.9 2.8E-24 9.7E-29 199.2 15.0 295 17-344 44-358 (359)
184 3k7y_A Aspartate aminotransfer 99.9 4.3E-24 1.5E-28 200.6 16.1 296 18-346 73-403 (405)
185 3lws_A Aromatic amino acid bet 99.9 7E-24 2.4E-28 196.4 17.2 293 19-345 45-356 (357)
186 2po3_A 4-dehydrase; external a 99.9 2E-23 6.9E-28 198.0 20.7 282 20-346 51-384 (424)
187 2fnu_A Aminotransferase; prote 99.9 7.3E-24 2.5E-28 197.5 16.7 292 19-349 30-372 (375)
188 3cog_A Cystathionine gamma-lya 99.9 5E-24 1.7E-28 200.6 15.7 292 15-346 61-400 (403)
189 2aeu_A Hypothetical protein MJ 99.9 2.8E-24 9.7E-29 200.4 12.4 292 23-350 60-372 (374)
190 2c81_A Glutamine-2-deoxy-scyll 99.9 1.1E-22 3.6E-27 192.6 22.7 306 2-349 20-414 (418)
191 2vi8_A Serine hydroxymethyltra 99.9 1.3E-22 4.5E-27 191.0 22.5 296 22-350 66-388 (405)
192 3nmy_A Xometc, cystathionine g 99.9 7.6E-24 2.6E-28 198.8 13.6 288 13-345 59-396 (400)
193 2fq6_A Cystathionine beta-lyas 99.9 3E-23 1E-27 195.5 16.4 299 11-343 72-413 (415)
194 3ecd_A Serine hydroxymethyltra 99.9 2.5E-22 8.6E-27 190.2 22.9 292 22-349 78-397 (425)
195 3ffr_A Phosphoserine aminotran 99.9 3.9E-23 1.3E-27 191.4 15.8 275 21-345 43-361 (362)
196 2ctz_A O-acetyl-L-homoserine s 99.9 7.6E-23 2.6E-27 193.7 17.6 288 13-345 50-420 (421)
197 3h7f_A Serine hydroxymethyltra 99.9 2.6E-22 8.9E-27 191.6 21.1 296 24-349 93-414 (447)
198 4h51_A Aspartate aminotransfer 99.9 1.8E-22 6.2E-27 189.7 19.1 305 19-351 85-419 (420)
199 3bb8_A CDP-4-keto-6-deoxy-D-gl 99.9 8E-22 2.7E-26 187.7 21.7 308 2-346 47-434 (437)
200 3ri6_A O-acetylhomoserine sulf 99.9 1.2E-22 4.1E-27 192.1 15.8 289 12-345 73-429 (430)
201 2qma_A Diaminobutyrate-pyruvat 99.9 1.4E-21 4.7E-26 189.1 22.8 303 26-349 145-496 (497)
202 3gbx_A Serine hydroxymethyltra 99.9 7.5E-22 2.5E-26 186.6 20.5 288 26-349 81-396 (420)
203 3b8x_A WBDK, pyridoxamine 5-ph 99.9 6.9E-22 2.4E-26 185.3 19.7 299 2-341 19-389 (390)
204 2x3l_A ORN/Lys/Arg decarboxyla 99.9 1.4E-22 4.6E-27 193.3 14.7 288 19-350 55-354 (446)
205 2dgk_A GAD-beta, GADB, glutama 99.9 3.8E-21 1.3E-25 183.8 24.5 309 23-353 83-438 (452)
206 3n0l_A Serine hydroxymethyltra 99.9 6.5E-21 2.2E-25 180.1 25.3 287 26-349 76-389 (417)
207 3ju7_A Putative PLP-dependent 99.9 1.2E-21 4E-26 182.7 19.2 305 2-346 20-373 (377)
208 3bwn_A AT1G70560, L-tryptophan 99.9 7.7E-23 2.6E-27 191.9 9.5 271 24-346 71-385 (391)
209 2z67_A O-phosphoseryl-tRNA(SEC 99.9 6.7E-21 2.3E-25 182.2 22.9 296 22-345 134-455 (456)
210 2jis_A Cysteine sulfinic acid 99.9 1.3E-20 4.5E-25 183.0 22.6 305 23-346 150-513 (515)
211 2okj_A Glutamate decarboxylase 99.9 2.5E-20 8.4E-25 180.6 24.4 305 25-349 136-502 (504)
212 1w23_A Phosphoserine aminotran 99.9 2.2E-21 7.4E-26 179.7 13.2 281 22-346 49-358 (360)
213 3hbx_A GAD 1, glutamate decarb 99.9 1.5E-19 5.2E-24 174.7 25.9 303 25-354 99-449 (502)
214 1rv3_A Serine hydroxymethyltra 99.8 2.4E-20 8.3E-25 179.5 17.9 292 25-346 94-429 (483)
215 2c0r_A PSAT, phosphoserine ami 99.8 1.6E-20 5.5E-25 174.1 15.0 282 22-346 50-359 (362)
216 3vp6_A Glutamate decarboxylase 99.8 1.6E-19 5.6E-24 174.8 22.4 306 24-349 138-505 (511)
217 2fyf_A PSAT, phosphoserine ami 99.8 7.6E-21 2.6E-25 178.7 12.1 275 22-346 79-396 (398)
218 2hox_A ALLIIN lyase 1; cystein 99.8 5.2E-21 1.8E-25 181.3 11.1 279 23-346 102-423 (427)
219 1js3_A DDC;, DOPA decarboxylas 99.8 2.9E-19 1E-23 172.3 21.3 295 25-349 117-474 (486)
220 4e1o_A HDC, histidine decarbox 99.8 4.1E-19 1.4E-23 170.9 21.4 299 26-349 123-478 (481)
221 3k40_A Aromatic-L-amino-acid d 99.8 7.9E-19 2.7E-23 168.5 22.8 299 26-349 118-471 (475)
222 3ht4_A Aluminum resistance pro 99.8 2.6E-19 8.8E-24 169.3 17.3 265 18-310 62-345 (431)
223 2a7v_A Serine hydroxymethyltra 99.8 5.2E-19 1.8E-23 169.1 19.2 284 28-346 107-439 (490)
224 1c4k_A Protein (ornithine deca 99.8 7.5E-19 2.6E-23 175.2 19.4 308 19-349 171-566 (730)
225 2vyc_A Biodegradative arginine 99.8 2.2E-18 7.6E-23 173.3 20.4 306 20-346 204-603 (755)
226 3jzl_A Putative cystathionine 99.8 2.4E-18 8E-23 161.4 18.3 261 18-310 56-339 (409)
227 3hvy_A Cystathionine beta-lyas 99.8 7.3E-18 2.5E-22 158.6 19.3 259 18-309 71-355 (427)
228 3i16_A Aluminum resistance pro 99.8 8.7E-18 3E-22 158.1 19.5 257 18-310 70-356 (427)
229 1wyu_A Glycine dehydrogenase ( 99.8 1.4E-17 4.6E-22 158.5 19.1 280 21-345 108-437 (438)
230 3e77_A Phosphoserine aminotran 99.7 2.4E-17 8.3E-22 152.3 15.9 287 21-346 58-373 (377)
231 3n75_A LDC, lysine decarboxyla 99.7 2.5E-16 8.7E-21 155.9 23.1 307 18-346 192-558 (715)
232 3qm2_A Phosphoserine aminotran 99.7 6.7E-18 2.3E-22 156.9 10.1 286 20-346 71-383 (386)
233 3hl2_A O-phosphoseryl-tRNA(SEC 99.7 4.9E-15 1.7E-19 136.9 20.5 293 38-353 136-465 (501)
234 3m5u_A Phosphoserine aminotran 99.7 1.4E-15 4.7E-20 140.1 15.3 275 21-346 50-358 (361)
235 3bc8_A O-phosphoseryl-tRNA(SEC 99.6 9.5E-15 3.2E-19 136.7 18.1 303 25-349 102-443 (450)
236 3ou5_A Serine hydroxymethyltra 99.4 8.5E-12 2.9E-16 115.0 18.1 289 24-346 102-439 (490)
237 3v7e_A Ribosome-associated pro 59.8 26 0.00088 23.7 5.9 48 115-172 16-63 (82)
238 1vhx_A Putative holliday junct 56.4 18 0.00061 27.9 5.1 57 114-172 43-101 (150)
239 1tks_A 3,4-dihydroxy-2-butanon 56.1 10 0.00036 30.8 3.8 37 127-167 158-194 (204)
240 3h0l_C Glutamyl-tRNA(Gln) amid 50.4 27 0.00092 24.4 4.8 38 328-366 17-54 (94)
241 3j21_Z 50S ribosomal protein L 50.3 31 0.0011 24.2 5.2 43 115-167 20-62 (99)
242 4gqr_A Pancreatic alpha-amylas 48.8 12 0.00042 34.8 3.7 26 147-172 75-100 (496)
243 3bzy_B ESCU; auto cleavage pro 48.0 11 0.00037 25.8 2.3 22 151-172 29-50 (83)
244 3mio_A DHBP synthase, 3,4-dihy 45.7 25 0.00085 28.6 4.5 37 127-167 157-194 (206)
245 3ip4_C Aspartyl/glutamyl-tRNA( 45.2 34 0.0012 24.2 4.7 39 328-367 19-57 (100)
246 1w41_A 50S ribosomal protein L 44.5 39 0.0013 23.8 5.0 43 115-167 21-63 (101)
247 2vt1_B Surface presentation of 41.1 16 0.00054 25.6 2.3 23 150-172 28-50 (93)
248 1g94_A Alpha-amylase; beta-alp 40.9 19 0.00066 33.3 3.7 26 147-172 63-88 (448)
249 3on1_A BH2414 protein; structu 40.2 48 0.0017 23.3 4.9 43 115-167 23-65 (101)
250 3t7y_A YOP proteins translocat 40.2 15 0.00051 26.0 2.1 22 151-172 44-65 (97)
251 1g57_A DHBP synthase, 3,4-dihy 39.5 35 0.0012 28.0 4.5 36 127-167 166-201 (217)
252 1lwj_A 4-alpha-glucanotransfer 39.3 26 0.0009 32.2 4.3 26 147-172 68-93 (441)
253 1snn_A DHBP synthase, 3,4-dihy 39.2 34 0.0012 28.3 4.3 37 126-167 176-212 (227)
254 3cpq_A 50S ribosomal protein L 38.6 52 0.0018 23.6 4.9 42 115-166 26-67 (110)
255 3c01_E Surface presentation of 38.4 17 0.00057 25.8 2.1 23 150-172 28-50 (98)
256 3v7q_A Probable ribosomal prot 38.4 59 0.002 22.9 5.1 44 115-168 24-67 (101)
257 4a18_G RPL30; ribosome, eukary 36.9 74 0.0025 22.5 5.5 43 115-167 27-69 (104)
258 1ud2_A Amylase, alpha-amylase; 36.8 24 0.00084 32.9 3.7 26 147-172 79-104 (480)
259 3bh4_A Alpha-amylase; calcium, 36.7 25 0.00084 32.9 3.7 26 147-172 77-102 (483)
260 3u5e_c L32, RP73, YL38, 60S ri 36.6 66 0.0022 22.8 5.2 42 115-166 27-68 (105)
261 1ht6_A AMY1, alpha-amylase iso 36.3 26 0.00089 31.9 3.7 26 147-172 67-92 (405)
262 1wza_A Alpha-amylase A; hydrol 36.2 31 0.0011 32.2 4.3 26 147-172 80-105 (488)
263 4aie_A Glucan 1,6-alpha-glucos 36.0 30 0.001 32.7 4.3 26 147-172 78-103 (549)
264 1hvx_A Alpha-amylase; hydrolas 36.0 26 0.00087 33.1 3.7 26 147-172 80-105 (515)
265 1mxg_A Alpha amylase; hyperthe 35.8 26 0.0009 32.2 3.7 26 147-172 85-110 (435)
266 1wpc_A Glucan 1,4-alpha-maltoh 35.4 27 0.00091 32.7 3.7 26 147-172 81-106 (485)
267 2guy_A Alpha-amylase A; (beta- 33.9 29 0.001 32.3 3.7 26 147-172 96-121 (478)
268 2dh2_A 4F2 cell-surface antige 33.5 38 0.0013 31.0 4.3 26 147-172 80-105 (424)
269 1jae_A Alpha-amylase; glycosid 33.2 26 0.00088 32.7 3.2 26 147-172 73-98 (471)
270 2aaa_A Alpha-amylase; glycosid 32.9 30 0.001 32.3 3.6 26 147-172 96-121 (484)
271 2z1k_A (NEO)pullulanase; hydro 32.8 31 0.0011 32.0 3.7 59 114-172 48-120 (475)
272 1gcy_A Glucan 1,4-alpha-maltot 32.4 32 0.0011 32.6 3.7 26 147-172 91-116 (527)
273 1x60_A Sporulation-specific N- 32.2 83 0.0028 20.6 4.9 45 298-343 22-68 (79)
274 2aif_A Ribosomal protein L7A; 31.6 1.4E+02 0.0046 22.3 6.4 45 115-168 46-90 (135)
275 2wc7_A Alpha amylase, catalyti 31.4 32 0.0011 32.1 3.6 26 147-172 101-126 (488)
276 1ua7_A Alpha-amylase; beta-alp 31.4 28 0.00097 31.8 3.1 26 147-172 73-98 (422)
277 3dhu_A Alpha-amylase; structur 31.3 34 0.0012 31.5 3.7 26 147-172 82-107 (449)
278 2lbw_A H/ACA ribonucleoprotein 31.3 92 0.0032 22.7 5.3 46 115-169 25-70 (121)
279 1x7f_A Outer surface protein; 30.8 41 0.0014 30.3 3.9 26 147-172 72-97 (385)
280 3ipw_A Hydrolase TATD family p 30.1 2.8E+02 0.0095 24.2 10.6 119 20-169 51-175 (325)
281 3rcm_A TATD family hydrolase; 29.9 2.6E+02 0.0089 23.8 9.1 113 22-168 18-133 (287)
282 1m53_A Isomaltulose synthase; 29.8 45 0.0015 31.9 4.3 26 147-172 91-116 (570)
283 3edf_A FSPCMD, cyclomaltodextr 29.7 44 0.0015 32.2 4.3 59 114-172 146-222 (601)
284 1iv0_A Hypothetical protein; r 29.7 89 0.0031 21.9 4.8 57 114-172 39-96 (98)
285 3pzt_A Endoglucanase; alpha/be 29.5 33 0.0011 30.1 3.1 53 114-169 70-125 (327)
286 1uok_A Oligo-1,6-glucosidase; 29.2 47 0.0016 31.7 4.3 26 147-172 77-102 (558)
287 1uta_A FTSN, MSGA, cell divisi 29.2 61 0.0021 21.5 3.8 46 297-343 21-68 (81)
288 1zja_A Trehalulose synthase; s 29.0 47 0.0016 31.6 4.3 26 147-172 78-103 (557)
289 3b1s_B Flagellar biosynthetic 34.8 12 0.00041 25.9 0.0 22 151-172 29-50 (87)
290 2i5o_A DNA polymerase ETA; zin 28.5 11 0.00037 21.7 -0.2 14 359-372 6-19 (39)
291 1cyg_A Cyclodextrin glucanotra 28.4 48 0.0016 32.6 4.3 60 113-172 49-135 (680)
292 7a3h_A Endoglucanase; hydrolas 28.4 36 0.0012 29.4 3.1 54 114-170 45-101 (303)
293 2f2e_A PA1607; transcription f 28.0 1.5E+02 0.0052 22.2 6.4 71 298-373 53-137 (146)
294 2zic_A Dextran glucosidase; TI 27.8 50 0.0017 31.4 4.2 26 147-172 77-102 (543)
295 2jug_A TUBC protein; docking d 27.8 98 0.0034 20.4 4.6 40 298-338 6-46 (78)
296 3kts_A Glycerol uptake operon 27.7 68 0.0023 25.8 4.3 42 114-167 18-59 (192)
297 1wzl_A Alpha-amylase II; pullu 27.6 41 0.0014 32.3 3.6 59 114-172 171-243 (585)
298 1tvn_A Cellulase, endoglucanas 27.5 41 0.0014 28.8 3.3 22 149-170 79-100 (293)
299 3vup_A Beta-1,4-mannanase; TIM 27.3 41 0.0014 28.9 3.3 22 149-170 90-111 (351)
300 2whl_A Beta-mannanase, baman5; 27.3 41 0.0014 28.8 3.3 23 147-169 62-84 (294)
301 3bc9_A AMYB, alpha amylase, ca 27.3 43 0.0015 32.3 3.7 27 146-172 206-232 (599)
302 3iz5_f 60S ribosomal protein L 27.3 1.1E+02 0.0037 22.1 5.0 44 115-168 31-74 (112)
303 1j0h_A Neopullulanase; beta-al 27.1 43 0.0015 32.2 3.7 59 114-172 174-246 (588)
304 3kfu_G Glutamyl-tRNA(Gln) amid 26.9 76 0.0026 22.0 4.0 34 328-362 21-54 (92)
305 4aee_A Alpha amylase, catalyti 26.8 53 0.0018 32.3 4.3 59 114-172 263-335 (696)
306 1bqc_A Protein (beta-mannanase 26.7 44 0.0015 28.8 3.3 23 147-169 63-85 (302)
307 2ki0_A DS119; beta-alpha-beta, 26.6 40 0.0014 17.8 1.8 19 147-165 13-31 (36)
308 4aef_A Neopullulanase (alpha-a 26.6 45 0.0015 32.5 3.7 59 114-172 237-309 (645)
309 3jug_A Beta-mannanase; TIM-bar 26.4 43 0.0015 29.7 3.3 24 147-170 85-108 (345)
310 2jli_A YSCU, YOP proteins tran 26.3 34 0.0012 25.3 2.1 22 151-172 73-94 (123)
311 1k4i_A 3,4-dihydroxy-2-butanon 26.3 60 0.0021 26.9 3.8 37 127-167 166-212 (233)
312 3irs_A Uncharacterized protein 26.1 1.5E+02 0.0051 25.2 6.7 50 115-168 108-157 (291)
313 2ze0_A Alpha-glucosidase; TIM 26.0 47 0.0016 31.6 3.7 26 147-172 77-102 (555)
314 3keo_A Redox-sensing transcrip 26.0 2.1E+02 0.0072 23.2 7.1 47 114-172 136-182 (212)
315 1qho_A Alpha-amylase; glycosid 25.9 46 0.0016 32.7 3.7 26 147-172 106-131 (686)
316 3n9k_A Glucan 1,3-beta-glucosi 25.8 45 0.0015 30.3 3.3 23 147-169 111-133 (399)
317 1znf_A 31ST zinc finger from X 25.8 23 0.0008 16.8 0.9 11 362-372 1-11 (27)
318 1d3c_A Cyclodextrin glycosyltr 25.7 47 0.0016 32.6 3.7 60 113-172 52-139 (686)
319 4hty_A Cellulase; (alpha/beta) 25.7 46 0.0016 29.6 3.3 22 148-169 120-141 (359)
320 3o63_A Probable thiamine-phosp 25.6 51 0.0017 27.6 3.4 51 115-169 46-103 (243)
321 3bmv_A Cyclomaltodextrin gluca 25.6 48 0.0016 32.6 3.7 60 113-172 52-140 (683)
322 1egz_A Endoglucanase Z, EGZ, C 25.6 47 0.0016 28.3 3.3 54 114-169 40-97 (291)
323 1qys_A TOP7; alpha-beta, novel 25.5 1.5E+02 0.0051 19.6 5.3 46 300-354 34-79 (106)
324 1g01_A Endoglucanase; alpha/be 25.5 46 0.0016 29.6 3.3 56 114-171 55-112 (364)
325 3aj7_A Oligo-1,6-glucosidase; 25.2 50 0.0017 31.8 3.7 26 147-172 86-111 (589)
326 3bzs_A ESCU; auto cleavage pro 25.0 36 0.0012 25.7 2.1 22 151-172 83-104 (137)
327 2ale_A SNU13, NHP2/L7AE family 25.0 1.2E+02 0.0042 22.6 5.1 45 115-168 37-81 (134)
328 2cks_A Endoglucanase E-5; carb 24.9 48 0.0016 28.6 3.3 53 114-169 44-100 (306)
329 1ard_A Yeast transcription fac 24.3 27 0.00093 16.8 1.0 11 362-372 2-12 (29)
330 3m07_A Putative alpha amylase; 24.3 65 0.0022 31.2 4.3 28 147-174 201-228 (618)
331 1ea9_C Cyclomaltodextrinase; h 23.8 49 0.0017 31.8 3.3 59 114-172 170-242 (583)
332 2xio_A Putative deoxyribonucle 23.7 3.2E+02 0.011 23.2 8.4 53 115-168 90-146 (301)
333 1h4p_A Glucan 1,3-beta-glucosi 23.5 52 0.0018 29.9 3.3 25 147-171 112-136 (408)
334 2xzm_U Ribosomal protein L7AE 23.5 1.3E+02 0.0045 22.1 5.0 45 115-168 29-73 (126)
335 1zzm_A Putative deoxyribonucle 23.3 3.1E+02 0.01 22.4 10.3 54 114-168 77-133 (259)
336 2jlj_A YSCU, YOP proteins tran 23.3 41 0.0014 25.7 2.1 22 151-172 82-103 (144)
337 1qnr_A Endo-1,4-B-D-mannanase; 22.8 52 0.0018 28.7 3.1 23 148-170 89-111 (344)
338 3mfq_A TROA, high-affinity zin 22.8 64 0.0022 27.6 3.6 43 115-167 201-243 (282)
339 3vgf_A Malto-oligosyltrehalose 22.6 64 0.0022 30.8 3.9 59 114-172 117-191 (558)
340 2p5m_A Arginine repressor; alp 22.1 1.8E+02 0.0063 19.4 7.8 61 276-343 18-81 (83)
341 1h1n_A Endo type cellulase ENG 22.0 61 0.0021 27.9 3.3 23 149-171 72-94 (305)
342 3czg_A Sucrose hydrolase; (alp 22.0 62 0.0021 31.5 3.7 59 114-172 104-179 (644)
343 1paa_A Yeast transcription fac 21.8 32 0.0011 16.8 0.9 11 362-372 2-12 (30)
344 2p0o_A Hypothetical protein DU 21.6 32 0.0011 30.9 1.4 26 147-172 48-73 (372)
345 1g5a_A Amylosucrase; glycosylt 21.6 64 0.0022 31.3 3.7 59 114-172 111-186 (628)
346 2bhu_A Maltooligosyltrehalose 21.6 65 0.0022 31.1 3.7 59 114-172 142-216 (602)
347 3qr3_A Endoglucanase EG-II; TI 21.4 63 0.0022 28.6 3.3 58 115-172 45-107 (340)
348 3ff4_A Uncharacterized protein 21.4 58 0.002 23.9 2.6 18 152-170 95-112 (122)
349 3nl6_A Thiamine biosynthetic b 21.3 1.2E+02 0.004 28.8 5.3 49 115-169 28-76 (540)
350 2kfq_A FP1; protein, de novo p 21.2 35 0.0012 17.3 1.0 10 362-371 2-11 (32)
351 2lvu_A Zinc finger and BTB dom 26.6 20 0.00069 17.0 0.0 11 362-372 2-12 (26)
352 2c0h_A Mannan endo-1,4-beta-ma 21.1 63 0.0022 28.3 3.3 21 149-169 91-111 (353)
353 1ceo_A Cellulase CELC; glycosy 20.9 64 0.0022 28.2 3.3 24 148-171 68-91 (343)
354 1vko_A Inositol-3-phosphate sy 20.9 1.3E+02 0.0043 28.3 5.1 53 113-173 263-328 (537)
355 1m7x_A 1,4-alpha-glucan branch 20.8 68 0.0023 31.0 3.7 59 114-172 153-228 (617)
356 3dgp_A RNA polymerase II trans 20.7 1.2E+02 0.0043 20.3 3.9 26 147-172 31-56 (80)
357 1sur_A PAPS reductase; assimil 20.6 2.5E+02 0.0085 22.4 6.7 47 114-167 56-102 (215)
358 3b0z_B Flagellar biosynthetic 26.1 21 0.00072 26.0 0.0 22 151-172 29-50 (114)
359 2kvh_A Zinc finger and BTB dom 20.4 24 0.0008 16.9 0.2 11 362-372 3-13 (27)
360 1fv5_A First zinc finger of U- 20.3 22 0.00074 19.7 0.0 12 361-372 7-18 (36)
361 3ghf_A Septum site-determining 20.2 1.1E+02 0.0037 22.4 3.9 16 151-166 63-78 (120)
362 3zss_A Putative glucanohydrola 20.2 72 0.0025 31.4 3.7 26 147-172 319-344 (695)
No 1
>4atq_A 4-aminobutyrate transaminase; transferase; HET: PLP; 2.75A {Arthrobacter aurescens} PDB: 4atp_A*
Probab=100.00 E-value=2.3e-47 Score=362.21 Aligned_cols=336 Identities=30% Similarity=0.537 Sum_probs=289.6
Q ss_pred hHHHHHHHhccccCcC-CCCCcHHHHHHHHhccc---CCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEec
Q 017259 2 KALQEQAEKLTLSSRA-FYNDKFPVFAERLTSMF---GYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCC 77 (374)
Q Consensus 2 ~a~~~~~~~~~~~~~~-~~~~~~~~l~~~l~~~~---~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~ 77 (374)
+|+.++++++.+.... .+.+...+++++|++.. +.++++|++|||+|++.|+++++.+. +|++|+.++
T Consensus 87 ~Ai~~q~~~~~~~~~~~~~~~~~~~lae~L~~~~p~~~~~~v~f~~sGsEA~e~AlklAr~~t--------~r~~ii~~~ 158 (456)
T 4atq_A 87 AAVQEAAAHFTHTCFMVTPYEGYVAVTEQLNRLTPGDHAKRTVLFNSGAEAVENAVKVARLAT--------GRDAVVAFD 158 (456)
T ss_dssp HHHHHHHHHCSCCTTTTSCCHHHHHHHHHHHHHSSCSSCEEEEEESSHHHHHHHHHHHHHHHH--------CCCEEEEET
T ss_pred HHHHHHHhhccCcccCccCcHHHHHHHHHHHHhCCCCCCcEEEEeCChHHHHHHHHHHHhhhh--------cCCeEEEEe
Confidence 6889999998886654 44667788999999987 35689999999999999999998764 348999999
Q ss_pred cCCCCcccccccccCCcc-ccccCCCCCCCceeccCC-----------CHHHHHHHHH---h--cCCcEEEEEEccccCC
Q 017259 78 GCFHGRTLAAISMSCDNE-AIRGFGPLLPGHLKVDFG-----------DITALEKIFK---E--SGDQIAGFLFEPIQGE 140 (374)
Q Consensus 78 ~~yhg~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-----------d~~~le~~l~---~--~~~~~~~vi~~~~~~~ 140 (374)
++|||.+..+.++++... ++..+.|...++..+|++ +.+.+++.++ + .++++++|++||+++.
T Consensus 159 ~~yHG~t~~als~t~~~~~~~~~~~p~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~iAAvivEPiqg~ 238 (456)
T 4atq_A 159 HAYHGRTNLTMALTAKAMPYKTNFGPFAPEVYRMPMSYPFREENPEITGAEAAKRAITMIEKQIGGDQVAAIIIEPIQGE 238 (456)
T ss_dssp TCCCCSSHHHHHHCCCCTTTTTTSCSCCSSEEEECCCCGGGCSSTTCCHHHHHHHHHHHHHHHTCGGGEEEEEECSSBTT
T ss_pred cccCCccccccccccCccccccCCCCccccceecccccccccCCCcccHHHHHHHHHHHHHHhhcCCceEEEEeccccCC
Confidence 999999999888877643 455666766666666653 2333333332 1 3468999999999999
Q ss_pred CCcccCChhHHHHHHHHHHhcCCEEEEeccccCCcccccCcccccCCCCCcEEEecccccCCccchhhheeCHHHHhhcC
Q 017259 141 AGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQ 220 (374)
Q Consensus 141 ~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~~~~~~g~~~~~~~~~~~~d~~s~sK~~~~G~~~~G~~~~~~~~~~~~~ 220 (374)
+|.+.++++++++|.++|++||+++|+||+++||+|+|..|+++++++.||+++++|+++||+ |+|.+++++++++.+.
T Consensus 239 gG~~~p~~~fl~~lr~lc~~~gillI~DEV~tG~GRtG~~~a~e~~gv~PDivt~gK~lggg~-P~~av~~~~~i~~~~~ 317 (456)
T 4atq_A 239 GGFIVPAEGFLPALSEWAKEKGIVFIADEVQSGFCRTGEWFAVDHEGVVPDIITMAKGIAGGL-PLSAITGRADLLDAVH 317 (456)
T ss_dssp TTCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGTTCCCSEEEECGGGGTTS-SCEEEEEEHHHHTTSC
T ss_pred CCccccchhhhHHHHHHHhhcCCceEecccccccCCccccccccccCCCCchhhhhhcccCcC-CceeeEecHHHHhccc
Confidence 999999999999999999999999999999999999999999999999999999999999998 9999999999999999
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHhCC----CceeeEEEEeeeEEEEeccCCC-
Q 017259 221 PGEHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFP----NYVKEVRGRGLFNAVEFDKTAL- 295 (374)
Q Consensus 221 ~~~~~~~~~~~~~~~~aa~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~~~~~~g~~~~~~~~~~~~- 295 (374)
+..+++||+++++++++++++|+.++++++.++.++..+++.+.|+++..+++ +++.++++.|.++.+++.++..
T Consensus 318 ~~~~~~Tf~gnpla~aaala~L~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~~~~~~~v~~VRG~Gl~~giel~~~~~~ 397 (456)
T 4atq_A 318 PGGLGGTYGGNPVACAAALAAIDTMEQHDLNGRARHIEELALGKLRELAAELSAGGGSVVGDIRGRGAMLAIELVQPGSK 397 (456)
T ss_dssp TTSSCCSSSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCC-----CEEEEEEETTEEEEEEBCTTSC
T ss_pred ccCCCCCCCCChHHHHhhHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHhcccccCCceEEeeecceEEEEEEecCCCC
Confidence 98899999999999999999999999999999999999999999999987753 4678899999999999854321
Q ss_pred ---chhHHHHHHHHHHCCeEeccCC--CCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 017259 296 ---PVSAYDICLKMKERGILAKPTH--DTIVRLTPPLSISSNELQEGSKALHDVLE 346 (374)
Q Consensus 296 ---~~~~~~~~~~l~~~Gi~v~~~~--~~~lRi~~~~~~~~e~i~~~~~~l~~~~~ 346 (374)
......+.+.|+++|+++.+++ ++.||+.|+++.|++++++++++|+++++
T Consensus 398 ~~~~~~~~~v~~~~~~~Gvl~~~~g~~~~~irl~PpL~it~~~id~~l~~l~~al~ 453 (456)
T 4atq_A 398 EPNAELTKAVAAACLKEGVIILTCGTYGNVIRLLPPLVISDELLIDGLEVLAAAIK 453 (456)
T ss_dssp CBCHHHHHHHHHHHHHTTEECEEECTTSCEEEECCCTTCCHHHHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHCCCEEEecCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHH
Confidence 2346689999999999998753 58999999999999999999999999987
No 2
>4e3q_A Pyruvate transaminase; aminotransferase, transferase; HET: PMP; 1.90A {Vibrio fluvialis} PDB: 4e3r_A* 3nui_A
Probab=100.00 E-value=2.5e-47 Score=363.25 Aligned_cols=341 Identities=27% Similarity=0.420 Sum_probs=289.3
Q ss_pred hHHHHHHHhccccCcC--CCCCcHHHHHHHHhccc--CCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEec
Q 017259 2 KALQEQAEKLTLSSRA--FYNDKFPVFAERLTSMF--GYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCC 77 (374)
Q Consensus 2 ~a~~~~~~~~~~~~~~--~~~~~~~~l~~~l~~~~--~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~ 77 (374)
+|+++|++++.+.... .+++...+|+++|++.. +.++++|++|||+|++.|+++++.|+ ..+| .+++.+||.+.
T Consensus 90 ~Ai~~q~~~l~~~~~~~~~~~~~~~~lAe~L~~~~p~~~~~v~f~~sGsEA~e~AiKlAr~~~-~~~g-~~~r~~ii~~~ 167 (473)
T 4e3q_A 90 DAAKAQYERFPGYHAFFGRMSDQTVMLSEKLVEVSPFDSGRVFYTNSGSEANDTMVKMLWFLH-AAEG-KPQKRKILTRW 167 (473)
T ss_dssp HHHHHHHHHCCCCCCCTTEEEHHHHHHHHHHHHHSSCSSCEEEEESSHHHHHHHHHHHHHHHH-HHTT-CTTCCEEEEET
T ss_pred HHHHHHHHhcccccccccccCHHHHHHHHHHHhhCCCCccEEEEeCchHHHHHHHHHHHHHHH-HhcC-CCCcceEEEee
Confidence 6889999998765432 35677889999999987 56799999999999999999998876 5556 55678999999
Q ss_pred cCCCCcccccccccCCccccccCCCCCCCceeccCCC------------------HHHHHHHHHhc-CCcEEEEEEcccc
Q 017259 78 GCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGD------------------ITALEKIFKES-GDQIAGFLFEPIQ 138 (374)
Q Consensus 78 ~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d------------------~~~le~~l~~~-~~~~~~vi~~~~~ 138 (374)
++|||.+..+.++++.+. +..+.+..+++..+++++ .+++++.+.+. ++++++|++||++
T Consensus 168 ~~yHG~t~~a~s~tg~~~-~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~iAavi~EPiq 246 (473)
T 4e3q_A 168 NAYHGVTAVSASMTGKPY-NSVFGLPLPGFVHLTCPHYWRYGEEGETEEQFVARLARELEETIQREGADTIAGFFAEPVM 246 (473)
T ss_dssp TCCCCSSHHHHHHSCCGG-GGGGTCSCTTEEEECCCCHHHHSCTTCCHHHHHHHHHHHHHHHHHHHCGGGEEEEEECSSB
T ss_pred ceECCCcccccccccccc-ccccCCCCCcccccCCCcccccccccchhhHHHHHHHHHHHHHHHhhCCCceEEEEeCCcc
Confidence 999999999999888653 344444445555554431 34566666653 4679999999999
Q ss_pred CCCCcccCChhHHHHHHHHHHhcCCEEEEeccccCCcccccCcccccCCCCCcEEEecccccCCccchhhheeCHHHHhh
Q 017259 139 GEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLC 218 (374)
Q Consensus 139 ~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~~~~~~g~~~~~~~~~~~~d~~s~sK~~~~G~~~~G~~~~~~~~~~~ 218 (374)
+.+|.+.++++++++|.++|++||++||+||+++||||+|..|+++++++.||+++++|+++||++|+|.+++++++++.
T Consensus 247 g~gG~~~p~~~fl~~lr~lc~~~gilLI~DEV~tGfGRtG~~fa~e~~gv~PDi~t~~K~l~gG~~Pl~av~~~~~i~~~ 326 (473)
T 4e3q_A 247 GAGGVIPPAKGYFQAILPILRKYDIPVISDEVICGFGRTGNTWGCVTYDFTPDAIISSKNLTAGFFPMGAVILGPELSKR 326 (473)
T ss_dssp STTTSBCCCTTHHHHHHHHHHHTTCCEEEECTTTSSSTTSSSCHHHHTTCCCSEEEECGGGGTTSSCCEEEEECHHHHHH
T ss_pred CCCCceeCCHHHHHHHHHHhcccceEEeccCccccCCcccchhHHHhcCCCCChHHhcccccCCCCCcccccccHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999984499999999998876
Q ss_pred cC-------CCCCCCCCCCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEec
Q 017259 219 IQ-------PGEHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFD 291 (374)
Q Consensus 219 ~~-------~~~~~~~~~~~~~~~~aa~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~ 291 (374)
+. ...+++||++|++++++++++|+.++++++.+++++..++++++|+++... +.+.++++.|.++.+++.
T Consensus 327 ~~~~~~~~~~~~hg~T~~Gnpla~Aaala~L~~i~~~~l~~~~~~~g~~l~~~L~~l~~~--~~v~~vRG~Gl~~gielv 404 (473)
T 4e3q_A 327 LETAIEAIEEFPHGFTASGHPVGCAIALKAIDVVMNEGLAENVRRLAPRFEERLKHIAER--PNIGEYRGIGFMWALEAV 404 (473)
T ss_dssp HHHHHHHHSCCCCCCTTTTCHHHHHHHHHHHHHHHHSSHHHHHHHHHHHHHHHHHHHTTS--TTEEEEEEETTEEEEEEC
T ss_pred hccccccccccccCCCCCCCcchhhhhhhhhhhhccccHHHHHHHHHHHHHHHHHHHhcC--CCeeEEeecceEEEEEEe
Confidence 63 446899999999999999999999999999999999999999999998654 367889999999999984
Q ss_pred cCCC--------chhHHHHHHHHHHCCeEeccCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhccC
Q 017259 292 KTAL--------PVSAYDICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVLELDL 349 (374)
Q Consensus 292 ~~~~--------~~~~~~~~~~l~~~Gi~v~~~~~~~lRi~~~~~~~~e~i~~~~~~l~~~~~~~~ 349 (374)
.+.. ......+.+.|+++|+++++. ++.+|++||+..|++++|+++++|+++++ ++
T Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~~~~~Gll~~~~-g~~i~l~PPL~it~~eid~~~~~l~~al~-~v 468 (473)
T 4e3q_A 405 KDKASKTPFDGNLSVSERIANTCTDLGLICRPL-GQSVVLCPPFILTEAQMDEMFDKLEKALD-KV 468 (473)
T ss_dssp SBTTTTBCCCGGGCHHHHHHHHHHHTTEECEEE-TTEEEECCCTTCCHHHHHHHHHHHHHHHH-HH
T ss_pred cCccccccccccHHHHHHHHHHHHHCCcEEEec-CCEEEEeCCCCCCHHHHHHHHHHHHHHHH-HH
Confidence 3221 123677999999999999988 47899999999999999999999999987 54
No 3
>3i5t_A Aminotransferase; pyridoxal 5'-phosphate, PSI-2, NYSGXRC, ST genomics, protein structure initiative; HET: PLP; 2.00A {Rhodobacter sphaeroides 2}
Probab=100.00 E-value=3.6e-47 Score=366.07 Aligned_cols=342 Identities=23% Similarity=0.398 Sum_probs=295.4
Q ss_pred hHHHHHHHhccccCc-CCCCCcHHHHHHHHhccc--CCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEecc
Q 017259 2 KALQEQAEKLTLSSR-AFYNDKFPVFAERLTSMF--GYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCG 78 (374)
Q Consensus 2 ~a~~~~~~~~~~~~~-~~~~~~~~~l~~~l~~~~--~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~ 78 (374)
+|+.++++++.+.++ .++++...+++++|++.+ +.++++|++||++|++.|+++++.++ ..+| .+++++||++++
T Consensus 77 ~A~~~~l~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~Aik~a~~~~-~~~g-~~~~~~vi~~~~ 154 (476)
T 3i5t_A 77 DAMAHQAMVLPYASPWYMATSPAARLAEKIATLTPGDLNRIFFTTGGSTAVDSALRFSEFYN-NVLG-RPQKKRIIVRYD 154 (476)
T ss_dssp HHHHHHHHHCCCCCTTTCBCHHHHHHHHHHHTTSSTTCCEEEEESSHHHHHHHHHHHHHHHH-HHTT-CTTCCEEEEETT
T ss_pred HHHHHHHHhccCcccCccCCHHHHHHHHHHHhcCCCCcCEEEEeCchHHHHHHHHHHHHHHH-HhcC-CCCCCEEEEEcC
Confidence 688888888776555 577889999999999988 67899999999999999999998764 4455 445689999999
Q ss_pred CCCCcccccccccCCccccccCCCCCCCceeccCCC----------------HHHHHHHHHhcC-CcEEEEEEccccCCC
Q 017259 79 CFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGD----------------ITALEKIFKESG-DQIAGFLFEPIQGEA 141 (374)
Q Consensus 79 ~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d----------------~~~le~~l~~~~-~~~~~vi~~~~~~~~ 141 (374)
+|||.+..+..+++.+.++..+.+...++..++++. +++|++++++.+ +++++|+++|+++++
T Consensus 155 ~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~aavi~ep~~~~~ 234 (476)
T 3i5t_A 155 GYHGSTALTAACTGRTGNWPNFDIAQDRISFLSSPNPRHAGNRSQEAFLDDLVQEFEDRIESLGPDTIAAFLAEPILASG 234 (476)
T ss_dssp CCCCSSHHHHHTCCCGGGCTTSCCCCTTEEEECCCCGGGCTTSCHHHHHHHHHHHHHHHHHHHCGGGEEEEEECSSBTTT
T ss_pred CcCcCChhhccccCChhhccccCCCCCCcEEeCCCcccccCCCchHHHHHHHHHHHHHHHHhcCCCCEEEEEECCccCCC
Confidence 999999999999888888877777766666665332 789999998643 579999999999999
Q ss_pred CcccCChhHHHHHHHHHHhcCCEEEEeccccCCcccccCcccc-cCCCCCcEEEecccccCC-ccchhhheeCHHHHhhc
Q 017259 142 GVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASD-WEEVRPDMVILGKALGGG-VIPVSAVLADKEVMLCI 219 (374)
Q Consensus 142 g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~~~~~~g~~~~~~-~~~~~~d~~s~sK~~~~G-~~~~G~~~~~~~~~~~~ 219 (374)
|.+.++++++++|.++|++||++||+||+|+||+++|..+++. .+++.||++++||++++| + |+|++++++++++.+
T Consensus 235 G~~~~~~~~L~~l~~lc~~~gillI~DEv~~g~gr~G~~~~~~~~~~v~pdi~t~sK~l~~G~~-plg~v~~~~~i~~~~ 313 (476)
T 3i5t_A 235 GVIIPPAGYHARFKAICEKHDILYISDEVVTGFGRCGEWFASEKVFGVVPDIITFAKGVTSGYV-PLGGLAISEAVLARI 313 (476)
T ss_dssp TSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSCHHHHTTCCCCSEEEECGGGGTTSS-CCEEEEECHHHHHTT
T ss_pred CcccCCHHHHHHHHHHHHHcCCEEEEEecccCCccccCceeeecccCCCcchhhhhhhhcCCCc-CeEEEEECHHHHHHH
Confidence 9999999999999999999999999999999999999887888 889999999999999999 7 999999999999998
Q ss_pred CCC-------CCCCCCCCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEecc
Q 017259 220 QPG-------EHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDK 292 (374)
Q Consensus 220 ~~~-------~~~~~~~~~~~~~~aa~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~ 292 (374)
... .++.+|++++++++|+.++++.++++++.++++++.+++++.|+.+. .+ +.+..+++.|.++++++.+
T Consensus 314 ~~~~~~~~~~~~~~t~~~np~a~aAa~aaL~~~~~~~~~~~~~~~~~~l~~~L~~l~-~~-~~v~~v~~~G~~~~i~~~~ 391 (476)
T 3i5t_A 314 SGENAKGSWFTNGYTYSNQPVACAAALANIELMEREGIVDQAREMADYFAAALASLR-DL-PGVAETRSVGLVGCVQCLL 391 (476)
T ss_dssp SGGGCTTCEECCCCTTTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHTTT-TS-TTEEEEEEETTEEEEEECC
T ss_pred hcCCcccccccccCCCCcCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHh-cC-CCeEEEEecCceeEEEEec
Confidence 763 57789999999999999999998878899999999999999998653 44 3777889999999998865
Q ss_pred CCC-c-------hhHHHHHHHHHHCCeEeccCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhccCC
Q 017259 293 TAL-P-------VSAYDICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVLELDLP 350 (374)
Q Consensus 293 ~~~-~-------~~~~~~~~~l~~~Gi~v~~~~~~~lRi~~~~~~~~e~i~~~~~~l~~~~~~~~~ 350 (374)
... . ....++++.|+++||++++.+ +++||+|++..+++++++++++|+++++ ++.
T Consensus 392 ~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~g-~~iRi~p~l~~t~e~i~~~l~~l~~~l~-~~~ 455 (476)
T 3i5t_A 392 DPTRADGTAEDKAFTLKIDERCFELGLIVRPLG-DLCVISPPLIISRAQIDEMVAIMRQAIT-EVS 455 (476)
T ss_dssp C-----CCHHHHHHHHHHHHHHHHTTEECEEET-TEEEECCCTTCCHHHHHHHHHHHHHHHH-HHH
T ss_pred CccccccccchhHHHHHHHHHHHHCCCEEEecC-CEEEEECCCCCCHHHHHHHHHHHHHHHH-HHH
Confidence 321 0 025678999999999999975 9999999999999999999999999997 553
No 4
>1z7d_A Ornithine aminotransferase; structural genomics consortium, SGC, malaria; 2.10A {Plasmodium yoelii yoelii} SCOP: c.67.1.4 PDB: 3lg0_A 3ntj_A
Probab=100.00 E-value=4.2e-46 Score=354.93 Aligned_cols=340 Identities=46% Similarity=0.823 Sum_probs=273.2
Q ss_pred hHHHHHHHhccccCcCCCCCcHHHHHHHHhcccCCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCC
Q 017259 2 KALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFH 81 (374)
Q Consensus 2 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yh 81 (374)
+|+.++++++.+.+..++.+...+++++|+++++.+++++++||++|++.++++++.+.+..+|.++++++|++++++||
T Consensus 88 ~ai~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~v~~~~sGseA~~~al~~a~~~~~~~~g~~~gr~~vi~~~~~yh 167 (433)
T 1z7d_A 88 NAMINQAKNLTICSRAFFSVPLGICERYLTNLLGYDKVLMMNTGAEANETAYKLCRKWGYEVKKIPENMAKIVVCKNNFS 167 (433)
T ss_dssp HHHHHHHTTCSCCCTTSEEHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHHHHHHHTSCCCTTCCEEEEETTC--
T ss_pred HHHHHHHHhCCCccCCcCCHHHHHHHHHHHhhcCCCeEEEeCCHHHHHHHHHHHHHHHhhhccCCCCCCCeEEEEeCCcC
Confidence 57778887766544446677889999999999999999999999999999999987543334444455689999999999
Q ss_pred CcccccccccCCccccccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhc
Q 017259 82 GRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKY 161 (374)
Q Consensus 82 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~ 161 (374)
|.+..+..+++.+.++.++.|...++..++++|+++|+++++ .+++++++++|+++++|.+.++++++++|.++|++|
T Consensus 168 g~~~~~~~~~g~~~~~~~~~p~~~~v~~~~~~d~~~le~~l~--~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~ 245 (433)
T 1z7d_A 168 GRTLGCISASTTKKCTSNFGPFAPQFSKVPYDDLEALEEELK--DPNVCAFIVEPIQGEAGVIVPSDNYLQGVYDICKKY 245 (433)
T ss_dssp ------------------------CEEEECTTCHHHHHHHHT--STTEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHT
T ss_pred CcchhhhcccCCccccccCCCCCCCeEEeCCCCHHHHHHHhC--CCCEEEEEEECCCCCCCccCCCHHHHHHHHHHHHHc
Confidence 998877776665555555666666778888899999999995 257999999999998998888999999999999999
Q ss_pred CCEEEEeccccCCcccccCcccccCCCCCcEEEecccccCC-ccchhhheeCHHHHhhcCCCCCCCCCCCCHHHHHHHHH
Q 017259 162 NILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGG-VIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIA 240 (374)
Q Consensus 162 ~i~li~Dea~~~~~~~g~~~~~~~~~~~~d~~s~sK~~~~G-~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~ 240 (374)
|++||+||+|+||++.|..++.+.+++.||++|+||++++| + |+|++++++++++.+....+..+|++++++++++.+
T Consensus 246 g~llI~DEv~~g~g~~g~~~~~~~~~~~~di~t~sK~l~~G~~-~~G~v~~~~~~~~~l~~~~~~~t~~~~~~~~aaa~a 324 (433)
T 1z7d_A 246 NVLFVADEVQTGLGRTGKLLCVHHYNVKPDVILLGKALSGGHY-PISAVLANDDIMLVIKPGEHGSTYGGNPLAASICVE 324 (433)
T ss_dssp TCEEEEECTTTTTTTTSSSSGGGGGTCCCSEEEECGGGGTTSS-CCEEEEECHHHHTTCCTTCCCCTTTTCHHHHHHHHH
T ss_pred CCEEEEecCccCCCcCCcchhhHhcCCCCCEEEECccccCCCC-CeEEEEECHHHHhhhccccccccCCCCHHHHHHHHH
Confidence 99999999999999888877777788899999999999999 7 999999999999988876678899999999999999
Q ss_pred HHHHHhhhcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccC-CCchhHHHHHHHHHHCCeEeccCCCC
Q 017259 241 SLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKT-ALPVSAYDICLKMKERGILAKPTHDT 319 (374)
Q Consensus 241 al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~~l~~~Gi~v~~~~~~ 319 (374)
+++.+.++++.++++++.+++++.|+++...+| .+...++.|.++++.++.. . +..++++.|+++||.+.+.+.+
T Consensus 325 al~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~~-~~~~~~~~g~~~~i~~~~~~~---~~~~~~~~l~~~Gv~v~~~~~~ 400 (433)
T 1z7d_A 325 ALNVLINEKLCENAEKLGGPFLENLKRELKDSK-IVRDVRGKGLLCAIEFKNELV---NVLDICLKLKENGLITRDVHDK 400 (433)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHHHHHHHTTCT-TEEEEEEETTEEEEEECTTTC---CHHHHHHHHHHTTEECCEETTT
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHHHHhCC-CeEEEEeeeeEEEEEEccChh---HHHHHHHHHHHCCeEEecCCCC
Confidence 999887778999999999999999988754453 5556778899999988653 2 4778999999999999997788
Q ss_pred EEEEecCCCCCHHHHHHHHHHHHHHHhccC
Q 017259 320 IVRLTPPLSISSNELQEGSKALHDVLELDL 349 (374)
Q Consensus 320 ~lRi~~~~~~~~e~i~~~~~~l~~~~~~~~ 349 (374)
++|++|++..+++++++++++|+++++ ++
T Consensus 401 ~iRi~~~~~~t~e~i~~~l~~l~~~l~-~~ 429 (433)
T 1z7d_A 401 TIRLTPPLCITKEQLDECTEIIVKTVK-FF 429 (433)
T ss_dssp EEEECCCTTCCHHHHHHHHHHHHHHHH-HH
T ss_pred EEEEECCcCCCHHHHHHHHHHHHHHHH-HH
Confidence 999999999999999999999999987 54
No 5
>3tfu_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; transferase, transferase-transferase inhibitor complex; HET: PL8; 1.94A {Mycobacterium tuberculosis} PDB: 3tft_A* 3bv0_A* 3lv2_A*
Probab=100.00 E-value=1.5e-46 Score=359.91 Aligned_cols=339 Identities=27% Similarity=0.435 Sum_probs=285.6
Q ss_pred hHHHHHHHhccccC-cCCCCCcHHHHHHHHhccc--CCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEecc
Q 017259 2 KALQEQAEKLTLSS-RAFYNDKFPVFAERLTSMF--GYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCG 78 (374)
Q Consensus 2 ~a~~~~~~~~~~~~-~~~~~~~~~~l~~~l~~~~--~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~ 78 (374)
+|+.++++++.+.+ ..++.+...+|+++|++.+ +.++++|++||++|++.|+++++.++ ..+| .+++++|+++++
T Consensus 98 ~A~~~~~~~~~~~~~~~~~~~~~~~L~e~la~~~~~~~~~v~~~~sGseA~~~Alk~a~~~~-~~~g-~~g~~~ii~~~~ 175 (457)
T 3tfu_A 98 QALTTQLRVMNHVMFGGLTHEPAARLAKLLVDITPAGLDTVFFSDSGSVSVEVAAKMALQYW-RGRG-LPGKRRLMTWRG 175 (457)
T ss_dssp HHHHHHHHHCSCCCSSSEECHHHHHHHHHHHHHSSTTEEEEEEESSHHHHHHHHHHHHHHHH-HHTT-CTTCCEEEEETT
T ss_pred HHHHHHHHhccCccccccCCHHHHHHHHHHHHhCCCCcCEEEEeCcHHHHHHHHHHHHHHHH-HhcC-CCCCceEEEEcC
Confidence 67888888877765 4567888999999999988 56799999999999999999998654 2233 345589999999
Q ss_pred CCCCcccccccccC-CccccccCCCCCCCceeccC-------CCHHHHHHHHHhcCCcEEEEEEcc-ccCCCCcccCChh
Q 017259 79 CFHGRTLAAISMSC-DNEAIRGFGPLLPGHLKVDF-------GDITALEKIFKESGDQIAGFLFEP-IQGEAGVIIPPDG 149 (374)
Q Consensus 79 ~yhg~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-------~d~~~le~~l~~~~~~~~~vi~~~-~~~~~g~~~~~~~ 149 (374)
+|||.+..+..+++ .+.++..+.+...++..+++ +|+++|+++++++++++++++++| ++|++|.+.++++
T Consensus 176 ~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~d~~~le~~l~~~~~~~aavi~ep~~~~~~G~~~~~~~ 255 (457)
T 3tfu_A 176 GYHGDTFLAMSICDPHGGMHSLWTDVLAAQVFAPQVPRDYDPAYSAAFEAQLAQHAGELAAVVVEPVVQGAGGMRFHDPR 255 (457)
T ss_dssp CCCCSSHHHHTTSCCC----------CCCCEEECCCCSSCCHHHHHHHHHHHHHHGGGEEEEEECSSEECTTTCEECCTH
T ss_pred CcCCccHHhhcccCCcccccccccCCCCCceEecCCCcccCHHHHHHHHHHHHhCCCCEEEEEEeCCCcCCCCcccCCHH
Confidence 99999998888744 45566666666666666665 378999999987667899999999 9999999999999
Q ss_pred HHHHHHHHHHhcCCEEEEeccccCCcccccCcccccCCCCCcEEEecccccCCccchhhheeCHHHHhhcC---CC--CC
Q 017259 150 YLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQ---PG--EH 224 (374)
Q Consensus 150 ~l~~l~~l~~~~~i~li~Dea~~~~~~~g~~~~~~~~~~~~d~~s~sK~~~~G~~~~G~~~~~~~~~~~~~---~~--~~ 224 (374)
++++|.++|++||++||+||+|+||+++|..++.+.+++.||++||||+++||++|+|++++++++++.+. .. .+
T Consensus 256 ~l~~l~~l~~~~gillI~DEv~~g~gr~G~~~a~~~~~~~pdiit~sK~l~gG~~~lG~v~~~~~i~~~~~~~~~~~~~~ 335 (457)
T 3tfu_A 256 YLHDLRDICRRYEVLLIFDEIATGFGRTGALFAADHAGVSPDIMCVGKALTGGYLSLAATLCTADVAHTISAGAAGALMH 335 (457)
T ss_dssp HHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSTHHHHTCCCSEEEECGGGGTTSSCCEEEEEEHHHHHHHHHSSSCSCCC
T ss_pred HHHHHHHHHHHcCCEEEEEcCccCCccccchhHhHhcCCCceEEEEChhhhCCCcceEEEEEcHHHHHHhhccCCCceeE
Confidence 99999999999999999999999999999888888889999999999999988449999999999988883 33 57
Q ss_pred CCCCCCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCchhHHHHHH
Q 017259 225 GSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICL 304 (374)
Q Consensus 225 ~~~~~~~~~~~~aa~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 304 (374)
+.+|++++++++++.++++.+.++++.++++++.+++++.|+++. .+| .+...++.|.++++++++.. +..++.+
T Consensus 336 ~~t~~~n~~a~aaa~aaL~~~~~~~~~~~~~~~~~~l~~~L~~l~-~~~-~v~~vr~~G~~~~i~l~~~~---~~~~~~~ 410 (457)
T 3tfu_A 336 GPTFMANPLACAVSVASVELLLGQDWRTRITELAAGLTAGLDTAR-ALP-AVTDVRVCGAIGVIECDRPV---DLAVATP 410 (457)
T ss_dssp CCTTTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHGGGG-GST-TEEEEEECSSCEEEEESSCC---CHHHHHH
T ss_pred ecCCCcCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHh-cCC-CeeeeecCCeEEEEEECCcc---cHHHHHH
Confidence 789999999999999999998878899999999999999998865 443 56678889999999987653 5789999
Q ss_pred HHHHCCeEeccCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhccC
Q 017259 305 KMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVLELDL 349 (374)
Q Consensus 305 ~l~~~Gi~v~~~~~~~lRi~~~~~~~~e~i~~~~~~l~~~~~~~~ 349 (374)
.|+++||++++. ++++||+|++..+++++++++++|+++++ ++
T Consensus 411 ~l~~~Gv~v~~~-~~~lRi~p~~~~t~eei~~~l~~L~~~l~-~~ 453 (457)
T 3tfu_A 411 AALDRGVWLRPF-RNLVYAMPPYICTPAEITQITSAMVEVAR-LV 453 (457)
T ss_dssp HHHHTTEECCCB-TTEEEECCCTTCCHHHHHHHHHHHHHHHH-HC
T ss_pred HHHHCCeEEEec-CCEEEEECCCCCCHHHHHHHHHHHHHHHH-Hh
Confidence 999999999987 58999999999999999999999999998 65
No 6
>2oat_A Ornithine aminotransferase; 5-fluoromethylornithine, PLP-dependent ENZ pyridoxal phosphate; HET: PFM; 1.95A {Homo sapiens} SCOP: c.67.1.4 PDB: 1oat_A* 2byj_A* 2byl_A* 1gbn_A* 2can_A*
Probab=100.00 E-value=1.3e-45 Score=352.08 Aligned_cols=338 Identities=52% Similarity=0.893 Sum_probs=290.2
Q ss_pred hHHHHHHHhccccCcCCCCCcHHHHHHHHhcccCCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCC
Q 017259 2 KALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFH 81 (374)
Q Consensus 2 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yh 81 (374)
+|+.++++++.+.+..++.+...+++++|+++++.+++++++||++|++.++++++.+.+..+|.++++++|++++++||
T Consensus 99 ~Ai~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~v~~~~sGseA~~~al~~~~~~~~~~~g~~~g~~~vi~~~~~yh 178 (439)
T 2oat_A 99 NALKSQVDKLTLTSRAFYNNVLGEYEEYITKLFNYHKVLPMNTGVEAGETACKLARKWGYTVKGIQKYKAKIVFAAGNFW 178 (439)
T ss_dssp HHHHHHHTTCSCCCTTSEESSHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHHHHHHHTTCCCTTCCEEEEETTCCC
T ss_pred HHHHHHHHhcCcccCccCCHHHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHHHHHHHHhhhccCCCCCCCeEEEEcCCCC
Confidence 57778887766554446678899999999999999999999999999999999987543344444455689999999999
Q ss_pred CcccccccccCCccccccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhc
Q 017259 82 GRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKY 161 (374)
Q Consensus 82 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~ 161 (374)
|.+..+..+++.+.++.++.|...++..++++|+++|+++++. +++++++++|+++++|.+.++++++++|.++|++|
T Consensus 179 g~~~~~~~~~g~~~~~~~~~p~~~~v~~~~~~d~~~le~~l~~--~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~ 256 (439)
T 2oat_A 179 GRTLSAISSSTDPTSYDGFGPFMPGFDIIPYNDLPALERALQD--PNVAAFMVEPIQGEAGVVVPDPGYLMGVRELCTRH 256 (439)
T ss_dssp CSSHHHHTTCCCHHHHTTSCSCCTTEEEECSSCHHHHHHHTTS--TTEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHT
T ss_pred CCCHhHhhcCCChhcccCCCCCCCCeEEeCCCCHHHHHHHhCC--CCEEEEEEECCCCCCCCcCCCHHHHHHHHHHHHHc
Confidence 9988777776666666677777777888899999999999852 57999999999998998888999999999999999
Q ss_pred CCEEEEeccccCCcccccCcccccCCCCCcEEEecccccCC-ccchhhheeCHHHHhhcCCCCCCCCCCCCHHHHHHHHH
Q 017259 162 NILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGG-VIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIA 240 (374)
Q Consensus 162 ~i~li~Dea~~~~~~~g~~~~~~~~~~~~d~~s~sK~~~~G-~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~ 240 (374)
|++||+||+|+||++.|..+.++.+++.||++|+||++++| + |+|++++++++++.+....++.+|++++++++++.+
T Consensus 257 gillI~DEv~~g~g~~g~~~~~~~~~~~~Di~t~sK~l~~G~~-~~G~v~~~~~~~~~l~~~~~~~t~~~~~~~~aaa~a 335 (439)
T 2oat_A 257 QVLFIADEIQTGLARTGRWLAVDYENVRPDIVLLGKALSGGLY-PVSAVLCDDDIMLTIKPGEHGSTYGGNPLGCRVAIA 335 (439)
T ss_dssp TCEEEEECTTTTTTTTSSSSGGGGGTCCCSEEEECGGGGTTSS-CCEEEEECHHHHTTSCTTSSCCSSTTCHHHHHHHHH
T ss_pred CCEEEEeccccCCccCCcchhHHHhCCCCcEEEecccccCCCC-CeEEEEECHHHHhccCCCCcccCCCcCHHHHHHHHH
Confidence 99999999999999988877778888899999999999999 7 999999999999988877778899999999999999
Q ss_pred HHHHHhhhcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCchhHHHHHHHHHHCCeEeccCCCCE
Q 017259 241 SLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTHDTI 320 (374)
Q Consensus 241 al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~~~ 320 (374)
+++.+.++++.++++++++++++.|+++ .+ +.+...++.|.++++.++... +.+..++++.|+++||.+.+.+.++
T Consensus 336 al~~~~~~~~~~~~~~~~~~l~~~L~~l--~~-~~~~~~~~~g~~~~v~l~~~~-~~~~~~l~~~l~~~Gv~v~~~~~~~ 411 (439)
T 2oat_A 336 ALEVLEEENLAENADKLGIILRNELMKL--PS-DVVTAVRGKGLLNAIVIKETK-DWDAWKVCLRLRDNGLLAKPTHGDI 411 (439)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHHHTTS--CT-TTEEEEEEETTEEEEEECCCS-SCCHHHHHHHHHHTTEECCBSSSSE
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHh--cC-CCcEEEEeeeeEEEEEEecCc-cHHHHHHHHHHHHCCeEEecCCCCE
Confidence 9998877788999999999999998776 23 355556788999999886531 0147789999999999999987899
Q ss_pred EEEecCCCCCHHHHHHHHHHHHHHHh
Q 017259 321 VRLTPPLSISSNELQEGSKALHDVLE 346 (374)
Q Consensus 321 lRi~~~~~~~~e~i~~~~~~l~~~~~ 346 (374)
+|+++++..+++++++++++|+++++
T Consensus 412 iRi~~~~~~t~e~i~~~l~~l~~~l~ 437 (439)
T 2oat_A 412 IRFAPPLVIKEDELRESIEIINKTIL 437 (439)
T ss_dssp EEECCCTTCCHHHHHHHHHHHHHHHH
T ss_pred EEEECccCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999987
No 7
>3hmu_A Aminotransferase, class III; structural genomics, pyridoxal phosphate, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi}
Probab=100.00 E-value=3.5e-46 Score=358.68 Aligned_cols=340 Identities=23% Similarity=0.424 Sum_probs=287.6
Q ss_pred hHHHHHHHhccc--cCcCCCCCcHHHHHHHHhccc--CCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEec
Q 017259 2 KALQEQAEKLTL--SSRAFYNDKFPVFAERLTSMF--GYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCC 77 (374)
Q Consensus 2 ~a~~~~~~~~~~--~~~~~~~~~~~~l~~~l~~~~--~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~ 77 (374)
+|+.++++++.+ ....++++...+|+++|++.+ +.++++|++||++|++.|+++++.++ ..+| .+++++||+++
T Consensus 78 ~A~~~~~~~~~~~~~~~~~~~~~~~~lae~l~~~~~~~~~~v~~~~sGseA~~~aik~a~~~~-~~~g-~~~~~~ii~~~ 155 (472)
T 3hmu_A 78 EVAARQMRELPYYNTFFKTTHVPAIALAQKLAELAPGDLNHVFFAGGGSEANDTNIRMVRTYW-QNKG-QPEKTVIISRK 155 (472)
T ss_dssp HHHHHHHHHCSCCCSSSSEECHHHHHHHHHHHHHSCTTEEEEEEESSHHHHHHHHHHHHHHHH-HHTT-CTTCCEEEEET
T ss_pred HHHHHHHHhccccccccccCCHHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHHHH-HhcC-CCCCCEEEEEc
Confidence 688888888763 223467888999999999988 56799999999999999999998764 3334 34568999999
Q ss_pred cCCCCcccccccccCCccccccCCCCCCCceeccCCC-----------------HHHHHHHHHhcC-CcEEEEEEccccC
Q 017259 78 GCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGD-----------------ITALEKIFKESG-DQIAGFLFEPIQG 139 (374)
Q Consensus 78 ~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d-----------------~~~le~~l~~~~-~~~~~vi~~~~~~ 139 (374)
++|||.+..+..+++.+.++..+. ...++..++.+. +++|++++++.+ +++++|++||+++
T Consensus 156 ~~yHg~t~~~~~~~~~~~~~~~~~-~~~~~~~v~~p~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~aavi~epv~~ 234 (472)
T 3hmu_A 156 NAYHGSTVASSALGGMAGMHAQSG-LIPDVHHINQPNWWAEGGDMDPEEFGLARARELEEAILELGENRVAAFIAEPVQG 234 (472)
T ss_dssp TCCCCSSHHHHHHSCCHHHHHTTC-CCSSEEEECCCCHHHHCTTCCHHHHHHHHHHHHHHHHHHHCGGGEEEEEECSSBS
T ss_pred CcCCCccHHhhhccCChhhccccC-CCCCcEEeCCCccccCCcccCHHHHHHHHHHHHHHHHHhcCCCCEEEEEEcCccC
Confidence 999999999998888877766666 445555555322 788999887543 5799999999999
Q ss_pred CCCcccCChhHHHHHHHHHHhcCCEEEEeccccCCcccccCcccccCCCCCcEEEecccccCC-ccchhhheeCHHHHhh
Q 017259 140 EAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGG-VIPVSAVLADKEVMLC 218 (374)
Q Consensus 140 ~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~~~~~~g~~~~~~~~~~~~d~~s~sK~~~~G-~~~~G~~~~~~~~~~~ 218 (374)
++|.+.++++++++|.++|++||++||+||+|+||++.|..++.+.+++.||+++|||++++| + |+|++++++++++.
T Consensus 235 ~gG~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~a~~~~~v~pdi~t~sK~l~gg~~-plG~v~~~~~i~~~ 313 (472)
T 3hmu_A 235 AGGVIVAPDSYWPEIQRICDKYDILLIADEVICGFGRTGNWFGTQTMGIRPHIMTIAKGLSSGYA-PIGGSIVCDEVAHV 313 (472)
T ss_dssp TTTCBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSCHHHHHTCCCSEEEECGGGTTTSS-CCEEEEEEHHHHHH
T ss_pred CCCcccCCHHHHHHHHHHHHHcCCEEEEEccccCCcccCccchhHHhCCCCceeeechhhhcCCc-ceEEEEECHHHHHh
Confidence 999999999999999999999999999999999999999888888889999999999999987 7 99999999999988
Q ss_pred cCC--CCCCCCCCCCHHHHHHHHHHHHHHhhhcHHHHHH-HHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCC
Q 017259 219 IQP--GEHGSTFGGNPLASAVAIASLDVIRDEKLAERSA-HLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTAL 295 (374)
Q Consensus 219 ~~~--~~~~~~~~~~~~~~~aa~~al~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 295 (374)
+.. ..++.+|++++++++|+.++++.++++++.++++ ++.+++++.|+.+. .+ +.+...++.|.++++++..+..
T Consensus 314 ~~~~~~~~~~t~~~np~a~aAa~aaL~~~~~~~~~~~~~~~~~~~l~~~L~~l~-~~-~~v~~vr~~G~~~~i~~~~~~~ 391 (472)
T 3hmu_A 314 IGKDEFNHGYTYSGHPVAAAVALENLRILEEENILDHVRNVAAPYLKEKWEALT-DH-PLVGEAKIVGMMASIALTPNKA 391 (472)
T ss_dssp HTTSCBCCCCTTTTCHHHHHHHHHHHHHHHHTTHHHHHHHTHHHHHHHHHHGGG-GS-TTEEEEEEETTEEEEEECSCGG
T ss_pred cccCCccccCCCCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHh-cC-CCeEEEEecCceEEEEEecCcc
Confidence 842 3567899999999999999999988788999999 99999999997764 35 3777889999999998854310
Q ss_pred ---------chhHHHHHHHHHHCCeEeccCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhccC
Q 017259 296 ---------PVSAYDICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVLELDL 349 (374)
Q Consensus 296 ---------~~~~~~~~~~l~~~Gi~v~~~~~~~lRi~~~~~~~~e~i~~~~~~l~~~~~~~~ 349 (374)
.....++++.|+++||++++.+ +++||+|++..+++++++++++|+++++ ++
T Consensus 392 ~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~g-~~iRi~p~~~~t~e~i~~~l~~l~~~l~-~~ 452 (472)
T 3hmu_A 392 SRAKFASEPGTIGYICRERCFANNLIMRHVG-DRMIISPPLVITPAEIDEMFVRIRKSLD-EA 452 (472)
T ss_dssp GTCCBSSCTTHHHHHHHHHHHHTTBCCEEET-TEEEECCCTTCCHHHHHHHHHHHHHHHH-HH
T ss_pred ccccccchhHHHHHHHHHHHHHCCcEEEecC-CEEEEECCCCCCHHHHHHHHHHHHHHHH-HH
Confidence 0126789999999999999986 9999999999999999999999999887 44
No 8
>3nx3_A Acoat, acetylornithine aminotransferase; csgid, structural genomics, center for structural genomics O infectious diseases; 1.80A {Campylobacter jejuni subsp}
Probab=100.00 E-value=2.5e-45 Score=345.70 Aligned_cols=334 Identities=31% Similarity=0.571 Sum_probs=296.5
Q ss_pred hHHHHHHHhccccCcCCCCCcHHHHHHHHhcccCCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCC
Q 017259 2 KALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFH 81 (374)
Q Consensus 2 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yh 81 (374)
+|+.++++++.+.++.++.+.+.+++++|++.++.+++++++||++|++.++++++.+. ..+| .++++|++++++||
T Consensus 59 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~v~~~~gg~ea~~~al~~~~~~~-~~~g--~~~~~vi~~~~~yh 135 (395)
T 3nx3_A 59 AKIKAQVDKLLHTSNLYYNENIAAAAKNLAKASALERVFFTNSGTESIEGAMKTARKYA-FNKG--VKGGQFIAFKHSFH 135 (395)
T ss_dssp HHHHHHHTTCSCCCTTSBCHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHHHHH-HHTT--CTTCEEEEETTCCC
T ss_pred HHHHHHHHhccccccccCCHHHHHHHHHHHHhcCCCeEEEeCCHHHHHHHHHHHHHHHh-hccC--CCCCEEEEEcCCcC
Confidence 56777777777666667788999999999999999999999999999999999987542 1122 22389999999999
Q ss_pred CcccccccccCCccccccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhc
Q 017259 82 GRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKY 161 (374)
Q Consensus 82 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~ 161 (374)
|....+..+++.+.+...+.+...++..++++|+++|+++++ +++++++++|+++++|.+.++++++++|.++|++|
T Consensus 136 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~---~~~~~v~~~~~~~~~G~~~~~~~~l~~l~~l~~~~ 212 (395)
T 3nx3_A 136 GRTLGALSLTANEKYQKPFKPLISGVKFAKYNDISSVEKLVN---EKTCAIILESVQGEGGINPANKDFYKALRKLCDEK 212 (395)
T ss_dssp CSSHHHHTTCCCHHHHGGGCSCCSCEEEECTTCHHHHHTTCC---TTEEEEEEESEECTTSCEECCHHHHHHHHHHHHHH
T ss_pred CCCHHHHhhcCCcccccccCCCCCCcEEeCCCCHHHHHHhcc---CCeEEEEEeCccCCCCcccCCHHHHHHHHHHHHHc
Confidence 999998888888888878888778888899999999999886 57999999999999999999999999999999999
Q ss_pred CCEEEEeccccCCcccccCcccccCCCCCcEEEecccccCCccchhhheeCHHH-HhhcCCCCCCCCCCCCHHHHHHHHH
Q 017259 162 NILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEV-MLCIQPGEHGSTFGGNPLASAVAIA 240 (374)
Q Consensus 162 ~i~li~Dea~~~~~~~g~~~~~~~~~~~~d~~s~sK~~~~G~~~~G~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~aa~~ 240 (374)
|++||+||+|+||++.|..+....++..+|++++||++++|+ |+|++++++++ .+.+.+..++.+++.++++++++.+
T Consensus 213 ~~~li~Dev~~~~g~~g~~~~~~~~~~~~d~~t~sK~~~~G~-~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~a 291 (395)
T 3nx3_A 213 DILLIADEIQCGMGRSGKFFAYEHAQILPDIMTSAKALGCGL-SVGAFVINQKVASNSLEAGDHGSTYGGNPLVCAGVNA 291 (395)
T ss_dssp TCEEEEECTTTTTTTTSSSSGGGGGTCCCSEEEECGGGTTTS-CCEEEEECHHHHHHHSCTTCCSSCBSCCHHHHHHHHH
T ss_pred CCEEEEEecccCCCcCCcchhHHhcCCCCCEEEecccccCCC-ceEEEEEchhhhhhhcCCcccCCCCCCCHHHHHHHHH
Confidence 999999999999998888777788888999999999999998 99999999998 8888877778899999999999999
Q ss_pred HHHHHhhhcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCchhHHHHHHHHHHCCeEeccCCCCE
Q 017259 241 SLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTHDTI 320 (374)
Q Consensus 241 al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~~~ 320 (374)
+++.+.++++.++++++.+++++.|+++...+| .+...++.|.++++.+++.. ...++.+.|+++||.+++++.++
T Consensus 292 al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~g~~~~~~~~~~~---~~~~~~~~l~~~Gi~v~~~~~~~ 367 (395)
T 3nx3_A 292 VFEIFKEEKILENVNKLTPYLEQSLDELINEFD-FCKKRKGLGFMQGLSLDKSV---KVAKVIQKCQENALLLISCGEND 367 (395)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCT-TEEEEEEETTEEEEEECTTS---CHHHHHHHHHHTTEECEEETTTE
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhCC-CeEEEEeEEEEEEEEeCCcc---hHHHHHHHHHHCCCEEecCCCCE
Confidence 999887778999999999999999998877664 66677888999999987643 57889999999999999988899
Q ss_pred EEEecCCCCCHHHHHHHHHHHHHHHh
Q 017259 321 VRLTPPLSISSNELQEGSKALHDVLE 346 (374)
Q Consensus 321 lRi~~~~~~~~e~i~~~~~~l~~~~~ 346 (374)
+||+|++..+++++++++++|+++++
T Consensus 368 iRi~~~~~~t~e~i~~~l~~l~~~l~ 393 (395)
T 3nx3_A 368 LRFLPPLILQKEHIDEMSEKLRKALK 393 (395)
T ss_dssp EEECCCTTCCHHHHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999987
No 9
>3gju_A Putative aminotransferase; pyridoxal phosphate, PLP-dependent transferase-like fold, ST genomics, joint center for structural genomics, JCSG; HET: MSE LLP PLP; 1.55A {Mesorhizobium loti} PDB: 3fcr_A*
Probab=100.00 E-value=3.3e-45 Score=351.54 Aligned_cols=343 Identities=24% Similarity=0.398 Sum_probs=290.2
Q ss_pred hHHHHHHHhcccc--CcCCCCCcHHHHHHHHhccc--CCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEec
Q 017259 2 KALQEQAEKLTLS--SRAFYNDKFPVFAERLTSMF--GYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCC 77 (374)
Q Consensus 2 ~a~~~~~~~~~~~--~~~~~~~~~~~l~~~l~~~~--~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~ 77 (374)
+|+.++++++.+. ...++.+...+++++|++.+ +.+++++++||++|++.|+++++.++ ..+| .+++++|++++
T Consensus 74 ~A~~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~gGseA~~~al~~~~~~~-~~~g-~~~~~~vi~~~ 151 (460)
T 3gju_A 74 DAIATQAKNLAYYHAYVGHGTEASITLAKMIIDRAPKGMSRVYFGLSGSDANETNIKLIWYYN-NVLG-RPEKKKIISRW 151 (460)
T ss_dssp HHHHHHHHHHSCCCCCTTCCCHHHHHHHHHHHHHSCTTEEEEEEESSHHHHHHHHHHHHHHHH-HHTT-CTTCCEEEEET
T ss_pred HHHHHHHHhccccccccccCCHHHHHHHHHHHhhCCCCcCEEEEeCchHHHHHHHHHHHHHHH-HhcC-CCCCCEEEEEC
Confidence 6778888876532 23466788999999999987 66799999999999999999998654 2333 34459999999
Q ss_pred cCCCCcccccccccCCccccccCCCCCCCceeccC------CC------------HHHHHHHHHhcC-CcEEEEEEcccc
Q 017259 78 GCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDF------GD------------ITALEKIFKESG-DQIAGFLFEPIQ 138 (374)
Q Consensus 78 ~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~d------------~~~le~~l~~~~-~~~~~vi~~~~~ 138 (374)
++|||.+..+..+++.+.++..+.+...++..++. +| +++|++++++.. +++++++++|++
T Consensus 152 ~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~le~~i~~~~~~~~aaii~ep~~ 231 (460)
T 3gju_A 152 RGYHGSGVMTGSLTGLDLFHNAFDLPRAPVLHTEAPYYFRRTDRSMSEEQFSQHCADKLEEMILAEGPETIAAFIGEPIL 231 (460)
T ss_dssp TCCCCSSHHHHHHCCCGGGTTTTTCSCTTEEEECCCCGGGCSCTTCCHHHHHHHHHHHHHHHHHHHCGGGEEEEEECSSB
T ss_pred CCcCCCCHHHhhccCCcccccccCCCCCCCEEeCCCccccCCccccChhHHHHHHHHHHHHHHHhcCCCCEEEEEECCcc
Confidence 99999999999888887777777776666655552 22 688999887533 579999999999
Q ss_pred CCCCcccCChhHHHHHHHHHHhcCCEEEEeccccCCcccccCcccccCCCCCcEEEecccccCC-ccchhhheeCHHHHh
Q 017259 139 GEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGG-VIPVSAVLADKEVML 217 (374)
Q Consensus 139 ~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~~~~~~g~~~~~~~~~~~~d~~s~sK~~~~G-~~~~G~~~~~~~~~~ 217 (374)
+++|.+.++++++++|.++|++||++||+||+|+||++.|..+....+++.||+++|||++++| + |+|++++++++++
T Consensus 232 ~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~gr~g~~~~~~~~~~~pdi~t~sK~l~gG~~-~lg~v~~~~~i~~ 310 (460)
T 3gju_A 232 GTGGIVPPPAGYWEKIQAVLKKYDVLLVADEVVTGFGRLGTMFGSDHYGIKPDLITIAKGLTSAYA-PLSGVIVADRVWQ 310 (460)
T ss_dssp STTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSCHHHHHTCCCSEEEECGGGTTTSS-CCEEEEEEHHHHH
T ss_pred CCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcccccchHhhcCCCCCeeeeehhhcCCCC-CeEEEEECHHHHH
Confidence 9999999999999999999999999999999999999999877778889999999999999988 6 9999999999988
Q ss_pred hc-------CCCCCCCCCCCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEe
Q 017259 218 CI-------QPGEHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEF 290 (374)
Q Consensus 218 ~~-------~~~~~~~~~~~~~~~~~aa~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~ 290 (374)
.+ ....++.+|++++++++++.++++.++++++.++++++.+++++.|.+....+| .+...++.|.++++++
T Consensus 311 ~~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-~~~~~~~~g~~~~~~~ 389 (460)
T 3gju_A 311 VLVQGSDKLGSLGHGWTYSAHPICVAAGVANLELIDEMDLVTNAGETGAYFRAELAKAVGGHK-NVGEVRGDGMLAAVEF 389 (460)
T ss_dssp HHHHHHHHHCSCSCCCTTTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTTST-TEEEEEEETTEEEEEE
T ss_pred HHhcccccccccccCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhcCC-CeEEEeeeeEEEEEEE
Confidence 88 344678899999999999999999987788999999999999999988776664 7778889999999988
Q ss_pred ccCCC--------chhHHHHHHHHHHCCeEeccCC-CCEEEEecCCCCCHHHHHHHHHHHHHHHhccC
Q 017259 291 DKTAL--------PVSAYDICLKMKERGILAKPTH-DTIVRLTPPLSISSNELQEGSKALHDVLELDL 349 (374)
Q Consensus 291 ~~~~~--------~~~~~~~~~~l~~~Gi~v~~~~-~~~lRi~~~~~~~~e~i~~~~~~l~~~~~~~~ 349 (374)
..... .....++++.|+++||++++.+ .+++||+|++..+++++++++++|+++++ ++
T Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~-~~ 456 (460)
T 3gju_A 390 VADKDDRVFFDASQKIGPQVATALAASGVIGRAMPQGDILGFAPPLCLTREQADIVVSKTADAVK-SV 456 (460)
T ss_dssp CSBTTTTBCCCGGGCHHHHHHHHHHHTTEECEECSSSCEEEECCCTTCCHHHHHHHHHHHHHHHH-HH
T ss_pred ccCccccccccchHHHHHHHHHHHHHCCeEEecCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHH-HH
Confidence 54321 0126689999999999999875 48999999999999999999999999998 54
No 10
>3dod_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, biotin biosynthesis, pyridoxal phosphate, adenosyl-L-methionine; HET: PLP; 1.90A {Bacillus subtilis} SCOP: c.67.1.0 PDB: 3drd_A 3du4_A*
Probab=100.00 E-value=1.5e-45 Score=352.79 Aligned_cols=344 Identities=28% Similarity=0.504 Sum_probs=268.1
Q ss_pred hHHHHHHHhccccC-cCCCCCcHHHHHHHHhccc--CCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEecc
Q 017259 2 KALQEQAEKLTLSS-RAFYNDKFPVFAERLTSMF--GYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCG 78 (374)
Q Consensus 2 ~a~~~~~~~~~~~~-~~~~~~~~~~l~~~l~~~~--~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~ 78 (374)
+|+.++++++.++. ..++.+...+++++|++.+ +.+++++++||++|++.|+++++.++ ..+| .+++++|+++++
T Consensus 67 ~A~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~al~~~~~~~-~~~G-~~~~~~vi~~~~ 144 (448)
T 3dod_A 67 DAIKKQLGKIAHSTLLGMTNVPATQLAETLIDISPKKLTRVFYSDSGAEAMEIALKMAFQYW-KNIG-KPEKQKFIAMKN 144 (448)
T ss_dssp HHHHHHHTTCSCCCCSSSEEHHHHHHHHHHHHHSCTTEEEEEEESSHHHHHHHHHHHHHHHH-HHTT-CTTCCEEEEEC-
T ss_pred HHHHHHHHhccCccccccCCHHHHHHHHHHHHhCCCCCCEEEEeCchHHHHHHHHHHHHHHH-HhhC-CCCCCEEEEECC
Confidence 57778887765543 3466788899999999988 56799999999999999999998653 2233 223599999999
Q ss_pred CCCCcccccccccCCccccccCCCCCCCceeccCCC----------------HHHHHHHHHhcCCcEEEEEEcccc-CCC
Q 017259 79 CFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGD----------------ITALEKIFKESGDQIAGFLFEPIQ-GEA 141 (374)
Q Consensus 79 ~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d----------------~~~le~~l~~~~~~~~~vi~~~~~-~~~ 141 (374)
+|||.+..+..+++.+.++..+.|...++..++.++ +++|+++++++++++++|+++|++ +++
T Consensus 145 ~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~~ 224 (448)
T 3dod_A 145 GYHGDTIGAVSVGSIELFHHVYGPLMFESYKAPIPYVYRSESGDPDECRDQCLRELAQLLEEHHEEIAALSIESMVQGAS 224 (448)
T ss_dssp ----------------------------CEEECCCCCTTSSSCCHHHHHHHHHHHHHHHHHHHGGGEEEEEEESSEESTT
T ss_pred CCCCccHHHHHhcCCccccccccCCCCCceEeCCCccccCCccchhhhhHHHHHHHHHHHHhCCCCEEEEEEeCcccCCC
Confidence 999999998888887777777777666666666654 789999998655689999999998 999
Q ss_pred CcccCChhHHHHHHHHHHhcCCEEEEeccccCCcccccCcccccCCCCCcEEEecccccCCccchhhheeCHHHHhhcCC
Q 017259 142 GVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQP 221 (374)
Q Consensus 142 g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~~~~~~g~~~~~~~~~~~~d~~s~sK~~~~G~~~~G~~~~~~~~~~~~~~ 221 (374)
|.+.++++++++|.++|++||++||+||+|+||++.|..++...+++.||+++|||++++|++|+|++++++++++.+..
T Consensus 225 G~~~~~~~~l~~l~~l~~~~~~~lI~DEv~~g~g~~g~~~a~~~~~~~~di~t~sK~l~~G~~~ig~v~~~~~~~~~~~~ 304 (448)
T 3dod_A 225 GMIVMPEGYLAGVRELCTTYDVLMIVDEVATGFGRTGKMFACEHENVQPDLMAAGKGITGGYLPIAVTFATEDIYKAFYD 304 (448)
T ss_dssp TCEECCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEEEECGGGGTTSSCCEEEEEEHHHHHTTCS
T ss_pred CeecCCHHHHHHHHHHHHHhCCEEEEeccccCCCcccchhhhhhcCCCCCEEEecccccCCcCceEEEEECHHHHHHhhh
Confidence 99999999999999999999999999999999999998878888899999999999999993499999999999999876
Q ss_pred -------CCCCCCCCCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCC
Q 017259 222 -------GEHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTA 294 (374)
Q Consensus 222 -------~~~~~~~~~~~~~~~aa~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 294 (374)
..++.+|++++++++++.++++.++++++.++++++.+++++.|++ ...+ +.+...++.|.++++.+....
T Consensus 305 ~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~~~~~l~~-l~~~-~~~~~~~~~g~~~~~~~~~~~ 382 (448)
T 3dod_A 305 DYENLKTFFHGHSYTGNQLGCAVALENLALFESENIVEQVAEKSKKLHFLLQD-LHAL-PHVGDIRQLGFMCGAELVRSK 382 (448)
T ss_dssp CGGGCCCCCCCCTTTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHH-HTTS-TTEEEEEEETTEEEEEECSBT
T ss_pred ccccCCcccccCCCCcCHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHH-HhcC-CCeEEEEeeeEEEEEEEccCc
Confidence 5677899999999999999999887788999999999999999998 5555 367778889999999886532
Q ss_pred Cc--------hhHHHHHHHHHHCCeEeccCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhccCCc
Q 017259 295 LP--------VSAYDICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVLELDLPK 351 (374)
Q Consensus 295 ~~--------~~~~~~~~~l~~~Gi~v~~~~~~~lRi~~~~~~~~e~i~~~~~~l~~~~~~~~~~ 351 (374)
.. ....++++.|+++||.+.+.+ +++||+|++..+++++++++++|+++++ ++..
T Consensus 383 ~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~-~~iRi~~~~~~t~e~i~~~l~~l~~~l~-~~~~ 445 (448)
T 3dod_A 383 ETKEPYPADRRIGYKVSLKMRELGMLTRPLG-DVIAFLPPLASTAEELSEMVAIMKQAIH-EVTS 445 (448)
T ss_dssp TTTBCCCGGGCHHHHHHHHHHHTTEECCEET-TEEEECCCTTCCHHHHHHHHHHHHHHHH-HHHT
T ss_pred ccccccchhhHHHHHHHHHHHHCCcEEeccC-CEEEEECCCCCCHHHHHHHHHHHHHHHH-HHhc
Confidence 10 014789999999999999984 8999999999999999999999999998 6543
No 11
>4a6r_A Omega transaminase; transferase, PLP-binding enzyme, transaminase fold type I; HET: TA8; 1.35A {Chromobacterium violaceum} PDB: 4a6t_A* 4a6u_A 4a72_A* 4ah3_A*
Probab=100.00 E-value=4.5e-45 Score=350.58 Aligned_cols=342 Identities=25% Similarity=0.428 Sum_probs=286.3
Q ss_pred hHHHHHHHhccc--cCcCCCCCcHHHHHHHHhccc--CCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEec
Q 017259 2 KALQEQAEKLTL--SSRAFYNDKFPVFAERLTSMF--GYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCC 77 (374)
Q Consensus 2 ~a~~~~~~~~~~--~~~~~~~~~~~~l~~~l~~~~--~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~ 77 (374)
+|+.++++++.+ ....++.+...+++++|++.+ +.+++++++||++|++.|+++++.++ ..+| .+++++|++++
T Consensus 73 ~A~~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~ggseA~~~al~~~~~~~-~~~g-~~~~~~vi~~~ 150 (459)
T 4a6r_A 73 EAARRQMEELPFYNTFFKTTHPAVVELSSLLAEVTPAGFDRVFYTNSGSESVDTMIRMVRRYW-DVQG-KPEKKTLIGRW 150 (459)
T ss_dssp HHHHHHHHHCSCCCTTSSSCCHHHHHHHHHHHHHSCTTCCEEEEESSHHHHHHHHHHHHHHHH-HHTT-CTTCCEEEEET
T ss_pred HHHHHHHHhccccccccccCCHHHHHHHHHHHHhCCCCCCEEEEeCchHHHHHHHHHHHHHHH-HhcC-CCCCCEEEEEC
Confidence 678888887652 223477888999999999987 57899999999999999999998754 3334 34559999999
Q ss_pred cCCCCcccccccccCCccccccCCCCCCCceeccCC---------C--------HHHHHHHHHhcC-CcEEEEEEccccC
Q 017259 78 GCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFG---------D--------ITALEKIFKESG-DQIAGFLFEPIQG 139 (374)
Q Consensus 78 ~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------d--------~~~le~~l~~~~-~~~~~vi~~~~~~ 139 (374)
++|||.+..+..+++.+.++..+.+...++..++.+ | +++|++++++.+ +++++++++|+++
T Consensus 151 ~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~~~~~~~~le~~i~~~~~~~~~~vi~ep~~~ 230 (459)
T 4a6r_A 151 NGYHGSTIGGASLGGMKYMHEQGDLPIPGMAHIEQPWWYKHGKDMTPDEFGVVAARWLEEKILEIGADKVAAFVGEPIQG 230 (459)
T ss_dssp TCCCCSSHHHHHHSCCTTTC---CCSCSSEEEECCCCHHHHCTTCCHHHHHHHHHHHHHHHHHHHCGGGEEEEEECSSBT
T ss_pred CCcCCccHHHHhhcCChhhccccCCCCCCCEEeCCCccccCCcccCHHHHHHHHHHHHHHHHHHcCCCCEEEEEECCccC
Confidence 999999999998888887777777666666666533 2 788999887643 5799999999999
Q ss_pred CCCcccCChhHHHHHHHHHHhcCCEEEEeccccCCcccccCcccccCCCCCcEEEecccccCC-ccchhhheeCHHHHhh
Q 017259 140 EAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGG-VIPVSAVLADKEVMLC 218 (374)
Q Consensus 140 ~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~~~~~~g~~~~~~~~~~~~d~~s~sK~~~~G-~~~~G~~~~~~~~~~~ 218 (374)
++|.+.++++++++|.++|++||++||+||+|+||++.|..+....+++.||+++|||++++| + |+|++++++++++.
T Consensus 231 ~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~pdi~t~sK~l~gg~~-~lg~v~~~~~i~~~ 309 (459)
T 4a6r_A 231 AGGVIVPPATYWPEIERICRKYDVLLVADEVICGFGRTGEWFGHQHFGFQPDLFTAAKGLSSGYL-PIGAVFVGKRVAEG 309 (459)
T ss_dssp TTTCBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSHHHHHTCCCSEEEECGGGGTTSS-CCEEEEECHHHHHH
T ss_pred CCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcccccchHhhcCCCCCeeehhhhhcCCCC-CccceeeCHHHHHH
Confidence 999999999999999999999999999999999999999877778889999999999999987 7 99999999999888
Q ss_pred cC---CCCCCCCCCCCHHHHHHHHHHHHHHhhhcHHHHHH-HHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCC
Q 017259 219 IQ---PGEHGSTFGGNPLASAVAIASLDVIRDEKLAERSA-HLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTA 294 (374)
Q Consensus 219 ~~---~~~~~~~~~~~~~~~~aa~~al~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 294 (374)
+. ...++.+|++++++++++.++++.++++++.++++ ++.+++++.|.+....+ +.+...++.|.++++++....
T Consensus 310 ~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~~~~~~g~~~~~~~~~~~ 388 (459)
T 4a6r_A 310 LIAGGDFNHGFTYSGHPVCAAVAHANVAALRDEGIVQRVKDDIGPYMQKRWRETFSRF-EHVDDVRGVGMVQAFTLVKNK 388 (459)
T ss_dssp HHHHCTTHHHHHHCSCHHHHHHHHHHHHHHHHTCHHHHHHHTHHHHHHHHHHHHHTTC-TTEEEEEEETTEEEEEECSBT
T ss_pred hhcCCCcccCCCCCCCHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhcC-CCeEEEEEEEEEEEEEEecCc
Confidence 86 44566789999999999999999887788999999 99999999994444445 367788899999999885431
Q ss_pred C--------chhHHHHHHHHHHCCeEeccCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhccC
Q 017259 295 L--------PVSAYDICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVLELDL 349 (374)
Q Consensus 295 ~--------~~~~~~~~~~l~~~Gi~v~~~~~~~lRi~~~~~~~~e~i~~~~~~l~~~~~~~~ 349 (374)
. .....++++.|+++||++++.+ +++||+|++..+++++++++++|+++++ ++
T Consensus 389 ~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~g-~~iRi~~~~~~t~e~i~~~l~~l~~~l~-~~ 449 (459)
T 4a6r_A 389 AKRELFPDFGEIGTLCRDIFFRNNLIMRACG-DHIVSAPPLVMTRAEVDEMLAVAERCLE-EF 449 (459)
T ss_dssp TTTBCCSSTTHHHHHHHHHHHHTTEECEEET-TEEEECCCTTCCHHHHHHHHHHHHHHHH-HH
T ss_pred cccccccchHHHHHHHHHHHHHCCeEEecCC-CEEEEECCCCCCHHHHHHHHHHHHHHHH-HH
Confidence 0 1126789999999999999985 8999999999999999999999999987 54
No 12
>4ao9_A Beta-phenylalanine aminotransferase; HET: PLP; 1.50A {Variovorax paradoxus} PDB: 4aoa_A*
Probab=100.00 E-value=1.6e-44 Score=341.20 Aligned_cols=322 Identities=21% Similarity=0.267 Sum_probs=277.1
Q ss_pred hHHHHHHHhccccCcCCCCCcHHHHHHHHhccc-CCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCC
Q 017259 2 KALQEQAEKLTLSSRAFYNDKFPVFAERLTSMF-GYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCF 80 (374)
Q Consensus 2 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~y 80 (374)
+|+.++++++.+.+ .+++...+++++|++.. +.++++|++||++|++.|+++++.++ +|++|+.++++|
T Consensus 110 ~Av~~q~~~~~~~~--~~~~~~~~lae~l~~~~p~~~~v~f~~SGsEA~e~AiklAr~~t--------gr~~ii~~~~~y 179 (454)
T 4ao9_A 110 DAVIEAMQGGINLT--GHNLLEGRLARLICERFPQIEQLRFTNSGTEANLMALTAALHFT--------GRRKIVVFSGGY 179 (454)
T ss_dssp HHHHHHHHTCSCCC--SEESSHHHHHHHHHHHSTTCSEEEEESSHHHHHHHHHHHHHHHH--------TCCEEEEETTCB
T ss_pred HHHHHHHhcCCCcc--CCcHHHHHHHHHHHHhCCCCCEEEEeCchHHHHHHHHHHHHhcc--------cCCeEEEEeCCc
Confidence 68888888876654 34677888999999977 78999999999999999999998764 348999999999
Q ss_pred CCcccccccccCCccccccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHh
Q 017259 81 HGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSK 160 (374)
Q Consensus 81 hg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~ 160 (374)
||.+.......+... ...+...+|++|++.+++.++++++++++|++||+++++|.+.++++++++|.++|++
T Consensus 180 HG~t~~~~~~~~~~~-------~~~~~~~~p~nd~~~l~~~l~~~~~~iAavIvEPv~g~~G~~~p~~~fL~~lr~lc~~ 252 (454)
T 4ao9_A 180 HGGVLGFGARPSPTT-------VPFDFLVLPYNDAQTARAQIERHGPEIAVVLVEPMQGASGCIPGQPDFLQALRESATQ 252 (454)
T ss_dssp CSTTCBBSSSBCTTS-------CCSEEEEECTTCHHHHHHHHHHTGGGEEEEEECSEESTTTCEECCHHHHHHHHHHHHH
T ss_pred CCccccccccccCcc-------CCCCcccCCCchHHHHHHHHhhcCCceEEEEeccccCCCCccCCchhhHHHHHHHHhh
Confidence 998877655443221 2234667889999999999998888999999999999999999999999999999999
Q ss_pred cCCEEEEeccccCCcccccCcccccCCCCCcEEEecccccCCccchhhheeCHHHHhhcCCC----CCCCCCCCCHHHHH
Q 017259 161 YNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPG----EHGSTFGGNPLASA 236 (374)
Q Consensus 161 ~~i~li~Dea~~~~~~~g~~~~~~~~~~~~d~~s~sK~~~~G~~~~G~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~ 236 (374)
||++||+||+++ ||.|..++.+.+++.||+++++|+++||+ |+|++.+++++++.+.+. .++.||++|+++++
T Consensus 253 ~g~lLI~DEV~t--GR~G~~~a~e~~gv~PDi~t~gK~lggG~-Piga~~~~~ei~~~~~~~~~~~~h~~T~~gnPla~A 329 (454)
T 4ao9_A 253 VGALLVFDEVMT--SRLAPHGLANKLGIRSDLTTLGKYIGGGM-SFGAFGGRADVMALFDPRTGPLAHSGTFNNNVMTMA 329 (454)
T ss_dssp HTCEEEEECTTG--GGGSTTCHHHHHTCCCSEEEEEGGGGTTS-SCEEEEECHHHHGGGCTTTCSCCCCCTTTTCHHHHH
T ss_pred cCCEEEEECCCc--CCCccccchhccCCCCcEEEeccccCCCC-cceeeeeHHHHHHHHhhccCCccccCCCCCCHHHHH
Confidence 999999999999 48899889899999999999999999998 999999999999988653 47789999999999
Q ss_pred HHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCC----------chhHHHHHHHH
Q 017259 237 VAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTAL----------PVSAYDICLKM 306 (374)
Q Consensus 237 aa~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----------~~~~~~~~~~l 306 (374)
|++++|+.++++++.++++++.++++++|+++..++ +++..+++.|+++.+.+.+... ......+...|
T Consensus 330 Aala~L~~l~~~~~~~~~~~~g~~l~~~L~~l~~~~-~~~~~vrg~G~m~gi~f~~~~~~~~~~~~~~d~~~~~~~~~~l 408 (454)
T 4ao9_A 330 AGYAGLTKLFTPEAAGALAERGEALRARLNALCANE-GVAMQFTGIGSLMNAHFVQGDVRSSEDLAAVDGRLRQLLFFHL 408 (454)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHH-TBSCEEEEETTEEEEESCCSCCCSGGGGTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHhhC-CCCEEEeeeceEEEEEEecCCCCCHHHHHhhhHHHHHHHHHHH
Confidence 999999999888999999999999999999998776 4888899999999998743221 12345688889
Q ss_pred HHCCeEeccCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhccC
Q 017259 307 KERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVLELDL 349 (374)
Q Consensus 307 ~~~Gi~v~~~~~~~lRi~~~~~~~~e~i~~~~~~l~~~~~~~~ 349 (374)
+++||++.|.+ ++.++..+|++|+|+++++|++++. +.
T Consensus 409 l~~Gv~~~p~~----~~~~s~~~T~~dId~~l~al~~~l~-~~ 446 (454)
T 4ao9_A 409 LNEDIYSSPRG----FVVLSLPLTDADIDRYVAAIGSFIG-GH 446 (454)
T ss_dssp HHTTEECCTTC----EEECCTTCCHHHHHHHHHHHHHHHH-HS
T ss_pred HHCCEEEcCCC----CEEEeCCCCHHHHHHHHHHHHHHHH-hc
Confidence 99999998864 3445577999999999999999998 65
No 13
>3oks_A 4-aminobutyrate transaminase; ssgcid, transferase, seattle structural genomics center for infectious disease; HET: LLP; 1.80A {Mycobacterium smegmatis} PDB: 3r4t_A* 3q8n_A
Probab=100.00 E-value=2.7e-44 Score=344.21 Aligned_cols=335 Identities=31% Similarity=0.551 Sum_probs=286.0
Q ss_pred hHHHHHHHhccccCc-CCCCCcHHHHHHHHhcccC---CCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEec
Q 017259 2 KALQEQAEKLTLSSR-AFYNDKFPVFAERLTSMFG---YDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCC 77 (374)
Q Consensus 2 ~a~~~~~~~~~~~~~-~~~~~~~~~l~~~l~~~~~---~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~ 77 (374)
+|+.++++++.++.. .++.+.+.+++++|++.++ .++++|++||++|++.|+++++.+. | +++|++++
T Consensus 84 ~A~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~~v~~~~sGseA~~~Alk~a~~~~----g----~~~ii~~~ 155 (451)
T 3oks_A 84 EAVRSQVGDFTHTCFMVTPYEGYVAVCEQLNRLTPVRGDKRSALFNSGSEAVENAVKIARSHT----H----KPAVVAFD 155 (451)
T ss_dssp HHHHHHHTTCSCCTTTTSCCHHHHHHHHHHHHHSSCCSSEEEEEESSHHHHHHHHHHHHHHHH----C----CCEEEEET
T ss_pred HHHHHHHHhcccccCCccCCHHHHHHHHHHHHhCCcCCCCEEEEeCcHHHHHHHHHHHHHHhc----C----CCeEEEEc
Confidence 678888887766543 4778889999999999873 5689999999999999999997531 2 38999999
Q ss_pred cCCCCcccccccccCCc-cccccCCCCCCCceeccCC------------------CHHHHHHHHHh--cCCcEEEEEEcc
Q 017259 78 GCFHGRTLAAISMSCDN-EAIRGFGPLLPGHLKVDFG------------------DITALEKIFKE--SGDQIAGFLFEP 136 (374)
Q Consensus 78 ~~yhg~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~------------------d~~~le~~l~~--~~~~~~~vi~~~ 136 (374)
++|||.+..+..+++.. .++..+.+...++..++++ +++.+++.+++ .++++++|+++|
T Consensus 156 ~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~~~~aavi~ep 235 (451)
T 3oks_A 156 HAYHGRTNLTMALTAKVMPYKDGFGPFAPEIYRAPLSYPFRDAEFGKELATDGELAAKRAITVIDKQIGADNLAAVVIEP 235 (451)
T ss_dssp TCCCCSSHHHHHHCCCCTTTTTTCCSCCSSEEEECCCCHHHHGGGCTTTTTCHHHHHHHHHHHHHHHTCGGGEEEEEECS
T ss_pred CCcCCccHHHHHhcCCCcccccCCCCCCCCcEEeCCCccccccccccccchhhHHHHHHHHHHHHhhcCCCCEEEEEEcC
Confidence 99999999998887764 6666777766677777765 23444455553 235799999999
Q ss_pred ccCCCCcccCChhHHHHHHHHHHhcCCEEEEeccccCCcccccCcccccCCCCCcEEEecccccCCccchhhheeCHHHH
Q 017259 137 IQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVM 216 (374)
Q Consensus 137 ~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~~~~~~g~~~~~~~~~~~~d~~s~sK~~~~G~~~~G~~~~~~~~~ 216 (374)
+++++|.+.++++++++|.++|++||++||+||+|+||++.|..++.+.+++.||+++|||++++|+ |+||++++++++
T Consensus 236 ~~~~gG~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~g~~g~~~~~~~~~~~pdi~t~sK~l~~G~-~iG~v~~~~~~~ 314 (451)
T 3oks_A 236 IQGEGGFIVPADGFLPTLLDWCRKNDVVFIADEVQTGFARTGAMFACEHEGIDPDLIVTAKGIAGGL-PLSAVTGRAEIM 314 (451)
T ss_dssp SBTTTTCBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEEEECGGGGTTS-SCEEEEEEHHHH
T ss_pred CcCCCCccCCCHHHHHHHHHHHHHcCCEEEEEecccCCCccccchhhhhcCCCCCeeeehhhhhCCc-ceEEEEECHHHH
Confidence 9999999999999999999999999999999999999999998888888899999999999999998 999999999999
Q ss_pred hhcCCCCCCCCCCCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccC---
Q 017259 217 LCIQPGEHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKT--- 293 (374)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~aa~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~--- 293 (374)
+.+....+..+|++++++++++.++++.+.++++.++++++.+++++.|+++...+| .+...++.|.++++.+.+.
T Consensus 315 ~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~-~~~~~~~~G~~~~~~~~~~~~~ 393 (451)
T 3oks_A 315 DSPHVSGLGGTYGGNPIACAAALATIETIESEGLVARAQQIEKIMKDRLGRLQAEDD-RIGDVRGRGAMIAMELVKAGTT 393 (451)
T ss_dssp TCSCTTSBCCSSSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCT-TEEEEEEETTEEEEEEBSTTSC
T ss_pred hhhcCCCcCCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhCC-CeEEEEEeeEEEEEEEecCccC
Confidence 999887788999999999999999999887778999999999999999999877764 6777888999999988431
Q ss_pred -CCchhHHHHHHHHHHCCeEeccCCC--CEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 017259 294 -ALPVSAYDICLKMKERGILAKPTHD--TIVRLTPPLSISSNELQEGSKALHDVLE 346 (374)
Q Consensus 294 -~~~~~~~~~~~~l~~~Gi~v~~~~~--~~lRi~~~~~~~~e~i~~~~~~l~~~~~ 346 (374)
.......++++.|+++||++.+++. +++||+|++..+++++++++++|+++++
T Consensus 394 ~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~ 449 (451)
T 3oks_A 394 EPDADLTKALCAGAHAAGVIVLSCGTYGNVVRFLPPLSIGDDLLNEGLDVLEEVLR 449 (451)
T ss_dssp CBCHHHHHHHHHHHHHTTEECEEECTTSCEEEECCCTTCCHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhCCcEEecCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHh
Confidence 0122467899999999999998653 8999999999999999999999999987
No 14
>3n5m_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, csgid; 2.05A {Bacillus anthracis}
Probab=100.00 E-value=3.9e-44 Score=343.51 Aligned_cols=340 Identities=29% Similarity=0.504 Sum_probs=285.2
Q ss_pred hHHHHHHHhccccCcCCCCCcHHHHHHHHhcccCCC-eEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCC
Q 017259 2 KALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGYD-MVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCF 80 (374)
Q Consensus 2 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~-~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~y 80 (374)
+|+.++++++.+....++.+...+++++|++.++.+ .++|++||++|++.|+++++.++ ...| .+++++|++++++|
T Consensus 72 ~A~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~v~~~~ggseA~~~al~~~~~~~-~~~g-~~~~~~vi~~~~~y 149 (452)
T 3n5m_A 72 EAAYKQLQTLSYFPMSQSHEPAIKLAEKLNEWLGGEYVIFFSNSGSEANETAFKIARQYY-AQKG-EPHRYKFMSRYRGY 149 (452)
T ss_dssp HHHHHHHTTCCCCCTTSEEHHHHHHHHHHHHHHTSCEEEEEESSHHHHHHHHHHHHHHHH-HTTT-CTTCCEEEEETTCC
T ss_pred HHHHHHHHhcCCcccccCCHHHHHHHHHHHHhCCCCceEEEeCchHHHHHHHHHHHHHHH-HhcC-CCCCCEEEEECCCc
Confidence 577788877766444577888999999999987432 39999999999999999998653 1122 22349999999999
Q ss_pred CCcccccccccCCccccccCCCCCCCceeccC--------CC---------HHHHHHHHH-hcCCcEEEEEEccc-cCCC
Q 017259 81 HGRTLAAISMSCDNEAIRGFGPLLPGHLKVDF--------GD---------ITALEKIFK-ESGDQIAGFLFEPI-QGEA 141 (374)
Q Consensus 81 hg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~d---------~~~le~~l~-~~~~~~~~vi~~~~-~~~~ 141 (374)
||.+..+..+++.+.+...+.+...++..++. +| +++|+++++ .+++++++++++|+ +| +
T Consensus 150 hg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~~~vi~ep~~~n-~ 228 (452)
T 3n5m_A 150 HGNTMATMAATGQAQRRYQYEPFASGFLHVTPPDCYRMPGIERENIYDVECVKEVDRVMTWELSETIAAFIMEPIITG-G 228 (452)
T ss_dssp CCSSHHHHHSCCCGGGTTTTCCCCSCEEEECCCCTTTSTTTTTSCGGGCHHHHHHHHHHHHHCGGGEEEEEECSSBTT-T
T ss_pred CCCCHHHHhcCCchhhccccCCCCCCCeEeCCCccccCccCCchhhHHHHHHHHHHHHHHhcCCCCEEEEEEccccCC-C
Confidence 99999888888887777666666555544443 44 899999998 34468999999999 88 9
Q ss_pred CcccCChhHHHHHHHHHHhcCCEEEEeccccCCcccccCcccccCCCCCcEEEecccccCC-ccchhhheeCHHHHhhcC
Q 017259 142 GVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGG-VIPVSAVLADKEVMLCIQ 220 (374)
Q Consensus 142 g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~~~~~~g~~~~~~~~~~~~d~~s~sK~~~~G-~~~~G~~~~~~~~~~~~~ 220 (374)
|.+.++++++++|.++|++||++||+||+|+||++.|..++...+++.||+++|||++++| + |+|++++++++++.+.
T Consensus 229 G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~g~~g~~~~~~~~~~~~di~t~sK~l~~G~~-~ig~~~~~~~i~~~~~ 307 (452)
T 3n5m_A 229 GILMAPQDYMKAVHETCQKHGALLISDEVICGFGRTGKAFGFMNYDVKPDIITMAKGITSAYL-PLSATAVKREIYEAFK 307 (452)
T ss_dssp TCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGTTCCCSEEEECGGGGTTSS-CCEEEEEEHHHHGGGC
T ss_pred CeeeCCHHHHHHHHHHHHHcCCEEEEecchhCCCcccccchhhhcCCCCCEEeecccccCCCc-ceEEEEECHHHHHHHh
Confidence 9999999999999999999999999999999999999888888889999999999999999 7 9999999999999885
Q ss_pred C------CCCCCCCCCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCC
Q 017259 221 P------GEHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTA 294 (374)
Q Consensus 221 ~------~~~~~~~~~~~~~~~aa~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 294 (374)
. ..++.++++++++++++.++++.++++++.++++++.+++++.|+++...+| .+...++.|.++++++....
T Consensus 308 ~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~-~~~~~~~~g~~~~i~~~~~~ 386 (452)
T 3n5m_A 308 GKGEYEFFRHINTFGGNPAACALALKNLEIIENENLIERSAQMGSLLLEQLKEEIGEHP-LVGDIRGKGLLVGIELVNDK 386 (452)
T ss_dssp SSSTTCSCCCCCSSTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTTCT-TEEEEEESSSCEEEEEEEET
T ss_pred hccCCCCccccCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhcCC-CeEEEEEEEEEEEEEEecCC
Confidence 3 2367889999999999999999887788999999999999999999876664 67778889999998874321
Q ss_pred C------chhHHHHHHHHHHCCeEeccCC------CCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 017259 295 L------PVSAYDICLKMKERGILAKPTH------DTIVRLTPPLSISSNELQEGSKALHDVLE 346 (374)
Q Consensus 295 ~------~~~~~~~~~~l~~~Gi~v~~~~------~~~lRi~~~~~~~~e~i~~~~~~l~~~~~ 346 (374)
. .....++++.|+++||++++.. .+++||+|++..+++++++++++|+++++
T Consensus 387 ~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~~~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~ 450 (452)
T 3n5m_A 387 ETKEPIDNDKIASVVNACKEKGLIIGRNGMTTAGYNNILTLAPPLVISSEEIAFVIGTLKTAME 450 (452)
T ss_dssp TTTEECCHHHHHHHHHHHHHTTEECEECTTSSTTCCCEEEECCCTTCCHHHHHHHHHHHHHHHT
T ss_pred cccCCCCHHHHHHHHHHHHHCCcEEeecCcccCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHH
Confidence 0 0124579999999999999875 68999999999999999999999999987
No 15
>4ffc_A 4-aminobutyrate aminotransferase (GABT); structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LLP; 1.80A {Mycobacterium abscessus}
Probab=100.00 E-value=3.2e-44 Score=343.83 Aligned_cols=335 Identities=32% Similarity=0.535 Sum_probs=285.1
Q ss_pred hHHHHHHHhccccCc-CCCCCcHHHHHHHHhcccC---CCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEec
Q 017259 2 KALQEQAEKLTLSSR-AFYNDKFPVFAERLTSMFG---YDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCC 77 (374)
Q Consensus 2 ~a~~~~~~~~~~~~~-~~~~~~~~~l~~~l~~~~~---~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~ 77 (374)
+|+.++++++.++.. .++.+...+++++|++.++ .++++|++||++|++.|+++++.+ .| +++|++++
T Consensus 87 ~A~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~~v~~~~sGseA~~~alk~a~~~----~g----~~~ii~~~ 158 (453)
T 4ffc_A 87 AAIADQATHFTHTCFMVTPYEQYVQVAELLNALTPGDHDKRTALFNSGAEAVENAIKVARLA----TG----RPAVVAFD 158 (453)
T ss_dssp HHHHHHHHHCSCCTTTTSCCHHHHHHHHHHHHHSSCSSCEEEEEESSHHHHHHHHHHHHHHH----HC----CCEEEEET
T ss_pred HHHHHHHHhccccccCcCCCHHHHHHHHHHHHhCCCCCCcEEEEeCcHHHHHHHHHHHHHHh----cC----CCEEEEEc
Confidence 678888888766543 4778889999999999874 578999999999999999998743 12 38999999
Q ss_pred cCCCCcccccccccCCc-cccccCCCCCCCceeccCC----C-------------HHHHHHHHHhcCCcEEEEEEccccC
Q 017259 78 GCFHGRTLAAISMSCDN-EAIRGFGPLLPGHLKVDFG----D-------------ITALEKIFKESGDQIAGFLFEPIQG 139 (374)
Q Consensus 78 ~~yhg~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~----d-------------~~~le~~l~~~~~~~~~vi~~~~~~ 139 (374)
++|||.+..+..+++.. .++..+.+...++..++++ | ++.|++.+. ++.+++|+++|+++
T Consensus 159 ~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~i~--~~~~aavi~ep~~~ 236 (453)
T 4ffc_A 159 NAYHGRTNLTMALTAKSMPYKSQFGPFAPEVYRMPASYPLRDEPGLTGEEAARRAISRIETQIG--AQSLAAIIIEPIQG 236 (453)
T ss_dssp TCCCCSSHHHHHHCCCCTTTTTTSCSCCSSEEEECCCCTTTSCTTCCHHHHHHHHHHHHHHHTC--GGGEEEEEECSSBT
T ss_pred CccCCcchHHHhhcCCCcccccCCCCCCCCcEEeCCCccccCccccchHHHHHHHHHHHHHhcC--CCCEEEEEEcCCCC
Confidence 99999999998887764 5666676666666666654 3 233443332 35799999999999
Q ss_pred CCCcccCChhHHHHHHHHHHhcCCEEEEeccccCCcccccCcccccCCCCCcEEEecccccCCccchhhheeCHHHHhhc
Q 017259 140 EAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCI 219 (374)
Q Consensus 140 ~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~~~~~~g~~~~~~~~~~~~d~~s~sK~~~~G~~~~G~~~~~~~~~~~~ 219 (374)
++|.+.++++++++|.++|++||++||+||+|+||++.|..++.+.+++.||+++|||++++|+ |+||+++++++++.+
T Consensus 237 ~gG~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~g~~g~~~a~~~~~~~pdi~t~sK~~~~G~-~~G~~~~~~~i~~~~ 315 (453)
T 4ffc_A 237 EGGFIVPAPGFLATLTAWASENGVVFIADEVQTGFARTGAWFASEHEGIVPDIVTMAKGIAGGM-PLSAVTGRAELMDAV 315 (453)
T ss_dssp TTTSBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSTHHHHTCCCSEEEECGGGGTTS-SCEEEEEEHHHHTTS
T ss_pred CCCcccCCHHHHHHHHHHHHHcCCEEEEecCccCCCcccccchhhhcCCCcchHhhhhhhcCCc-CeEEEEECHHHHhhh
Confidence 9999999999999999999999999999999999999998778888899999999999999998 999999999999999
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCC----C
Q 017259 220 QPGEHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTA----L 295 (374)
Q Consensus 220 ~~~~~~~~~~~~~~~~~aa~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~ 295 (374)
.+..++.+|++++++++++.++++.+.++++.++++++.+++++.|+++...+| .+...++.|.++++.+.... .
T Consensus 316 ~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~ 394 (453)
T 4ffc_A 316 YAGGLGGTYGGNPVTCAAAVAALGVMRELDLPARARAIEASVTSRLSALAEEVD-IIGEVRGRGAMLAIEIVKPGTLEPD 394 (453)
T ss_dssp CTTSSCCSSSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCS-SEEEEEEETTEEEEEEBCTTSCCBC
T ss_pred cccCcCCCCCcCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhCC-CeEEEEeeceEEEEEEecCcccCCC
Confidence 887788999999999999999999887788999999999999999999877774 67778889999999884310 1
Q ss_pred chhHHHHHHHHHHCCeEeccCCC--CEEEEecCCCCCHHHHHHHHHHHHHHHhccC
Q 017259 296 PVSAYDICLKMKERGILAKPTHD--TIVRLTPPLSISSNELQEGSKALHDVLELDL 349 (374)
Q Consensus 296 ~~~~~~~~~~l~~~Gi~v~~~~~--~~lRi~~~~~~~~e~i~~~~~~l~~~~~~~~ 349 (374)
.....++.+.|+++||++.+++. +.+||++++..+++++++++++|+++++ ++
T Consensus 395 ~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~-~~ 449 (453)
T 4ffc_A 395 AALTKSIAAEALSQGVLILTCGTFGNVIRLLPPLVIGDDLLDEGITALSDIIR-AK 449 (453)
T ss_dssp HHHHHHHHHHHHHTTEECCEECTTSCEEEECCCTTCCHHHHHHHHHHHHHHHH-HH
T ss_pred HHHHHHHHHHHHhCCCEEecCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHH-HH
Confidence 22477899999999999998654 8999999999999999999999999998 65
No 16
>2pb2_A Acetylornithine/succinyldiaminopimelate aminotran; ARGD, pyridoxal 5'-phosphate, arginine metabolism, lysine biosynthesis, gabaculine; HET: PLP; 1.91A {Salmonella typhimurium} PDB: 2pb0_A*
Probab=100.00 E-value=3.3e-44 Score=340.70 Aligned_cols=337 Identities=34% Similarity=0.545 Sum_probs=281.5
Q ss_pred hHHHHHHHhccccCcCCCCCcHHHHHHHHhcccCCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCC
Q 017259 2 KALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFH 81 (374)
Q Consensus 2 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yh 81 (374)
+|+.+++++..+.++.+..+...+++++|+++++.+++++++||++|++.++++++.+. ..+| .+++++|++++++||
T Consensus 80 ~ai~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~v~~~~ggteA~~~al~~~~~~~-~~~~-~~g~~~vi~~~~~yh 157 (420)
T 2pb2_A 80 EALKSQGETLWHTSNVFTNEPALRLGRKLIDATFAERVLFMNSGTEANETAFKLARHYA-CVRH-SPFKTKIIAFHNAFH 157 (420)
T ss_dssp HHHHHHHTTCCCCCTTSCCHHHHHHHHHHHHHSSCSEEEEESSHHHHHHHHHHHHHHHH-HHHT-CTTCCEEEEETTCCC
T ss_pred HHHHHHHHhcccccCccCCHHHHHHHHHHHhhCCCCeEEEeCCHHHHHHHHHHHHHHHh-hhcc-CCCCCEEEEEeCCcC
Confidence 57777777766554456678899999999999999999999999999999999987532 1222 123469999999999
Q ss_pred CcccccccccCCccccccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhc
Q 017259 82 GRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKY 161 (374)
Q Consensus 82 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~ 161 (374)
+.+..+..+++...+..++.|...++..++++|+++|+++++ +++++++++|++|++|.+.++.+++++|.++|++|
T Consensus 158 ~~~~~~~~~~g~~~~~~~~~p~~~~~~~~~~~d~~~le~~i~---~~~~~vi~~p~~~~gG~~~~~~~~l~~l~~l~~~~ 234 (420)
T 2pb2_A 158 GRSLFTVSVGGQPKYSDGFGPKPADIIHVPFNDLHAVKAVMD---DHTCAVVVEPIQGEGGVQAATPEFLKGLRDLCDEH 234 (420)
T ss_dssp CSSHHHHHHSSCHHHHTTSSSCCSCEEEECTTCHHHHHHHCC---TTEEEEEECSEETTTTSEECCHHHHHHHHHHHHHT
T ss_pred CcCHHHHHhcCCccccccCCCCCCCeEEecCCCHHHHHHHhc---cCceEEEEeCCcCCCCeecCCHHHHHHHHHHHHHc
Confidence 998877776666555666777777788888889999999987 57999999999887777777999999999999999
Q ss_pred CCEEEEeccccCCcccccCcccccCCCCCcEEEecccccCCccchhhheeCHHHHhhcCCCCCCCCCCCCHHHHHHHHHH
Q 017259 162 NILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIAS 241 (374)
Q Consensus 162 ~i~li~Dea~~~~~~~g~~~~~~~~~~~~d~~s~sK~~~~G~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~a 241 (374)
|++||+||+|+|+++.|..+..+.+++.||++||||++++|+ |+|++++++++++.+....++.+|++++++++++.++
T Consensus 235 gi~lI~Dev~~g~~~~g~~~~~~~~~~~~diit~sK~l~~G~-~iG~~~~~~~l~~~l~~~~~~~t~~~~~~~~aa~~a~ 313 (420)
T 2pb2_A 235 QALLVFDEVQCGMGRTGDLFAYMHYGVTPDILTSAKALGGGF-PVSAMLTTQEIASAFHVGSHGSTYGGNPLACAVAGAA 313 (420)
T ss_dssp TCEEEEECTTTTTTTTSSSSHHHHHTCCCSEEEECGGGGTTS-CCEEEEECHHHHTTCC----CCEECCCHHHHHHHHHH
T ss_pred CCEEEEEcCCcCcccCCcHHHHHhcCCCCCeEEecccccCCC-ceEEEEEhHHHHHhhcCCCcCcccCcCHHHHHHHHHH
Confidence 999999999999988887766666778899999999999999 9999999999988888766778899999999999999
Q ss_pred HHHHhhhcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCchhHHHHHHHHHHCCeEeccCCCCEE
Q 017259 242 LDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTHDTIV 321 (374)
Q Consensus 242 l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~~~l 321 (374)
++.+.++++.++++++++++.+.|+++...+| .+...++.|.++++.++... ..+..++.+.|+++||.+.+++++++
T Consensus 314 L~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~-~~~~~~~~g~~~~v~~~~~~-~~~~~~l~~~l~~~Gi~v~~~~~~~i 391 (420)
T 2pb2_A 314 FDIINTPEVLQGIHTKRQQFVQHLQAIDEQFD-IFSDIRGMGLLIGAELKPKY-KGRARDFLYAGAEAGVMVLNAGADVM 391 (420)
T ss_dssp HHHHSSHHHHHHHHHHHHHHHHHHHHHHHHHC-CEEEEEEETTEEEEEECGGG-TTCHHHHHHHHHHTTEECEESSTTEE
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHHHhcCC-CeEEEEecceEEEEEECCCc-hHHHHHHHHHHHHCCCEEEeCCCCEE
Confidence 99887778899999999999999988754443 55566778999999886420 01367899999999999999878999
Q ss_pred EEecCCCCCHHHHHHHHHHHHHHHh
Q 017259 322 RLTPPLSISSNELQEGSKALHDVLE 346 (374)
Q Consensus 322 Ri~~~~~~~~e~i~~~~~~l~~~~~ 346 (374)
|++|++..+++++++++++|+++++
T Consensus 392 Rl~~~~~~t~eei~~~~~~l~~~l~ 416 (420)
T 2pb2_A 392 RFAPSLVVEEADIHEGMQRFAQAVG 416 (420)
T ss_dssp EECCCTTCCHHHHHHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999987
No 17
>3i4j_A Aminotransferase, class III; structural GENOMICS,NYSGXRC, target 11246C, deino radiodurans, pyridoxal phosphate, transfe PSI-2; 1.70A {Deinococcus radiodurans}
Probab=100.00 E-value=5.9e-44 Score=340.15 Aligned_cols=343 Identities=30% Similarity=0.508 Sum_probs=266.7
Q ss_pred hHHHHHHHhccccCc-CCCCCcHHHHHHHHhccc--CCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEecc
Q 017259 2 KALQEQAEKLTLSSR-AFYNDKFPVFAERLTSMF--GYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCG 78 (374)
Q Consensus 2 ~a~~~~~~~~~~~~~-~~~~~~~~~l~~~l~~~~--~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~ 78 (374)
+|+.+++++..++++ .++.+.+.+++++|++.+ +.+++++++||++|++.++++++.++ ..+| ++++++|+++++
T Consensus 52 ~a~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~v~~~~gg~ea~~~al~~~~~~~-~~~g-~~~~~~vi~~~~ 129 (430)
T 3i4j_A 52 ERMAAQAARLPFVHGSQFSSDVLEEYAGRLARFVGLPTFRFWAVSGGSEATESAVKLARQYH-VERG-EPGRFKVITRVP 129 (430)
T ss_dssp HHHHHHHHHCCCCCTTTCEEHHHHHHHHHHHHHTTCTTCEEEEESSHHHHHHHHHHHHHHHH-HHTT-CTTCCEEEEETT
T ss_pred HHHHHHHHhcccccccccCCHHHHHHHHHHHHhCCCCCCEEEEeCcHHHHHHHHHHHHHHHH-HhcC-CCCCcEEEEEeC
Confidence 577778877665443 577788999999999988 56799999999999999999997653 3344 344589999999
Q ss_pred CCCCcccccccccCCccccccCCCCCC--CceeccCCC--------HHHHHHHHHhcC-CcEEEEEEccccC-CCCcccC
Q 017259 79 CFHGRTLAAISMSCDNEAIRGFGPLLP--GHLKVDFGD--------ITALEKIFKESG-DQIAGFLFEPIQG-EAGVIIP 146 (374)
Q Consensus 79 ~yhg~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~d--------~~~le~~l~~~~-~~~~~vi~~~~~~-~~g~~~~ 146 (374)
+|||....+..+++.+.+...+.+... ++..+++++ +++|++++++.+ +++++++++|+++ ++|.+.+
T Consensus 130 ~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~~~vi~~p~~~~~~G~~~~ 209 (430)
T 3i4j_A 130 SYHGASLGSLAASGMGARRELYTPLMRPEAWPKLPKPDPARNGAEDAEGLRALLEREGPETVAAFMAEPVVGASDAALAP 209 (430)
T ss_dssp C-------------------------CGGGSCEECCCCTTSCHHHHHTHHHHHHHHHCGGGEEEEEECSSCCGGGTTCCC
T ss_pred CcCCCCcccccccCccccccccCCcCCCCCceEcCCCcccchhhHHHHHHHHHHHhcCCCCEEEEEEcCcccCcCCcccC
Confidence 999999888887777666666666655 666777653 489999998643 5789999999999 9999999
Q ss_pred ChhHHHHHHHHHHhcCCEEEEeccccCCcccccCcccccC-CCCCcEEEecccccCC-ccchhhheeCHHHHhhcCCC--
Q 017259 147 PDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWE-EVRPDMVILGKALGGG-VIPVSAVLADKEVMLCIQPG-- 222 (374)
Q Consensus 147 ~~~~l~~l~~l~~~~~i~li~Dea~~~~~~~g~~~~~~~~-~~~~d~~s~sK~~~~G-~~~~G~~~~~~~~~~~~~~~-- 222 (374)
+++++++|.++|++||++||+||+|++|++.|..++...+ +..||+++|||++++| + |+||+++++++++.+...
T Consensus 210 ~~~~l~~l~~l~~~~~~~li~DEv~~~~~~~g~~~~~~~~~~~~~di~t~sK~l~~G~~-r~G~~~~~~~i~~~~~~~~~ 288 (430)
T 3i4j_A 210 APGYYERVRDICDEAGIIFIADEVMSGMGRCGSPLALSRWSGVTPDIAVLGKGLAAGYA-PLAGLLAAPQVYETVMGGSG 288 (430)
T ss_dssp CTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGTTTCCCSEEEECGGGTTTSS-CCEEEEECHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHHcCCEEEEechhhCCCcccchhhhhhhcCCCCcEEEEcccccCCcc-ccEEEEECHHHHHHHhccCC
Confidence 9999999999999999999999999999999887788888 8999999999999999 8 999999999998888753
Q ss_pred --CCCCCCCCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCC-----
Q 017259 223 --EHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTAL----- 295 (374)
Q Consensus 223 --~~~~~~~~~~~~~~aa~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----- 295 (374)
.+..+++.++++++++.++++.+.++++.++++++.+++++.|+++...+| .+...++.|.++++.+.+...
T Consensus 289 ~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~ 367 (430)
T 3i4j_A 289 AFMHGFTYAGHPVSVAAGLSVLDIVEREDLTGAAKERGAQLLAGLQALQARFP-QMMQVRGTGLLLGVVLGDLATGQAFE 367 (430)
T ss_dssp BCCCCCTTTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCT-TEEEEEEETTEEEEEEC---------
T ss_pred cccccCCCCCCHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHhCC-CeEEEEEEEEEEEEEeccccccCCCc
Confidence 567889999999999999999887788999999999999999999876764 677788889999998853210
Q ss_pred -chhHHHHHHHHHHCCeEeccC-------CCCEEEEecCCCCCHHHHHHHHHHHHHHHhccC
Q 017259 296 -PVSAYDICLKMKERGILAKPT-------HDTIVRLTPPLSISSNELQEGSKALHDVLELDL 349 (374)
Q Consensus 296 -~~~~~~~~~~l~~~Gi~v~~~-------~~~~lRi~~~~~~~~e~i~~~~~~l~~~~~~~~ 349 (374)
.....++++.|+++||++++. .++++||++++..+++++++++++|+++++ ++
T Consensus 368 ~~~~~~~~~~~l~~~Gv~v~~~~~~~~~~~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~-~~ 428 (430)
T 3i4j_A 368 TPGIASRIGAAALKRGLITYPGSGAEPNGRGDHLLLGPPLSITAAEVDGLLALLAGALE-DV 428 (430)
T ss_dssp ---CHHHHHHHHHHTTEECC-----------CEEEECCCTTCCHHHHHHHHHHHHHHHH-HH
T ss_pred cHHHHHHHHHHHHhCCCEEEecccccCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHH-Hh
Confidence 012467999999999999986 368999999999999999999999999987 54
No 18
>3dxv_A Alpha-amino-epsilon-caprolactam racemase; fold-TYPE1, pyridoxal-5'-phosphate dependent racemase, pyrid phosphate, isomerase; HET: PLP; 2.21A {Achromobacter obae} PDB: 2zuk_A* 3dxw_A*
Probab=100.00 E-value=4.5e-43 Score=334.91 Aligned_cols=338 Identities=26% Similarity=0.459 Sum_probs=278.9
Q ss_pred hHHHHHHHhccccC-cCCCCCcHHHHHHHHhccc--CC-CeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEec
Q 017259 2 KALQEQAEKLTLSS-RAFYNDKFPVFAERLTSMF--GY-DMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCC 77 (374)
Q Consensus 2 ~a~~~~~~~~~~~~-~~~~~~~~~~l~~~l~~~~--~~-~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~ 77 (374)
+|+.+++++..+++ ..++.+.+.+++++|++.+ +. +++++++||++|++.++++++.+. ++ ++|++++
T Consensus 66 ~a~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~ggsea~~~al~~~~~~~---~~-----~~vi~~~ 137 (439)
T 3dxv_A 66 AAVSAAAANPAGATILSASNAPAVTLAERLLASFPGEGTHKIWFGHSGSDANEAAYRAIVKAT---GR-----SGVIAFA 137 (439)
T ss_dssp HHHHHHHHSCSCSCSSSSEEHHHHHHHHHHHHTTTCTTTEEEEEESSHHHHHHHHHHHHHHHH---SC-----CEEEEET
T ss_pred HHHHHHHHhccCccccccCCHHHHHHHHHHHHhCCCCCCCEEEEeCCHHHHHHHHHHHHHHHh---CC-----CEEEEEC
Confidence 56777777765544 4567888999999999988 66 699999999999999999875421 23 7899999
Q ss_pred cCCCCcccccccccCCcc--ccccCCCCCCCceeccCC----------CHHHHHHHHH-hcCCcEEEEEEccccCCCCcc
Q 017259 78 GCFHGRTLAAISMSCDNE--AIRGFGPLLPGHLKVDFG----------DITALEKIFK-ESGDQIAGFLFEPIQGEAGVI 144 (374)
Q Consensus 78 ~~yhg~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~----------d~~~le~~l~-~~~~~~~~vi~~~~~~~~g~~ 144 (374)
++|||.+..+..+++... +...+.+...++..++++ |+++|+++++ .+++++++++++|+++++|.+
T Consensus 138 ~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~~vi~~p~~~~~G~~ 217 (439)
T 3dxv_A 138 GAYHGCTVGSMAFSGHSVQADAAKADGLILLPYPDPYRPYRNDPTGDAILTLLTEKLAAVPAGSIGAAFIEPIQSDGGLI 217 (439)
T ss_dssp TCCCCSSHHHHCC-------------CEEEECCCCSSSCBTTBTTSHHHHHHHHHHHHTSCTTCEEEEEECSSBSTTTSB
T ss_pred CCCCCCcHHHHhhcCCCchhhccccCCCCCCcEEcCCCcccccccHHHHHHHHHHHHHhcCCCCEEEEEEccccCCCCCc
Confidence 999999988887776544 554555544445555655 5899999994 334689999999999999999
Q ss_pred cCChhHHHHHHHHHHhcCCEEEEeccccCCcccccCcccccCCCCCcEEEecccccCCccchhhheeCHHHHhhcCCCCC
Q 017259 145 IPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEH 224 (374)
Q Consensus 145 ~~~~~~l~~l~~l~~~~~i~li~Dea~~~~~~~g~~~~~~~~~~~~d~~s~sK~~~~G~~~~G~~~~~~~~~~~~~~~~~ 224 (374)
.++++++++|.++|++||++||+||+|+||++.|..+..+.++..||++||||++++|+ |+||+++++++++.+....+
T Consensus 218 ~~~~~~l~~l~~l~~~~~~~li~DE~~~g~g~~g~~~~~~~~~~~~di~s~sK~~~~G~-riG~~~~~~~~~~~~~~~~~ 296 (439)
T 3dxv_A 218 VPPDGFLRKFADICRAHGILVVCDEVKVGLARSGRLHCFEHEGFVPDILVLGKGLGGGL-PLSAVIAPAEILDCASAFAM 296 (439)
T ss_dssp CCCTTHHHHHHHHHHHTTCEEEEECTTTCTTTTSSSSGGGGTTCCCSEEEECGGGGTTS-CCEEEEEEHHHHTSCSSSSC
T ss_pred cCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCchhhHHHhcCCCCCEEEEcchhcCCc-ceEEEEECHHHHhhhcCCCc
Confidence 99999999999999999999999999999988888777788889999999999999999 99999999999999987777
Q ss_pred CCCCCCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCC-----CchhH
Q 017259 225 GSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTA-----LPVSA 299 (374)
Q Consensus 225 ~~~~~~~~~~~~aa~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~~ 299 (374)
..++ .++++++++.++++.+.++++.++++++.+++++.|+++...++ .+...++.|.++++.+.... .....
T Consensus 297 ~~t~-~~~~~~~aa~aal~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 374 (439)
T 3dxv_A 297 QTLH-GNPISAAAGLAVLETIDRDDLPAMAERKGRLLRDGLSELAKRHP-LIGDIRGRGLACGMELVCDRQSREPARAET 374 (439)
T ss_dssp CTTT-TCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCT-TEEEEEEETTEEEEEEEEETTTTEECHHHH
T ss_pred CCCc-ccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCC-CeEEEEEEEEEEEEEEecCccccCCCHHHH
Confidence 8889 99999999999999887788999999999999999999877764 67778889999998873210 01246
Q ss_pred HHHHHHHHHCCeEeccCCC--CEEEEecCCCCCHHHHHHHHHHHHHHHhccCCc
Q 017259 300 YDICLKMKERGILAKPTHD--TIVRLTPPLSISSNELQEGSKALHDVLELDLPK 351 (374)
Q Consensus 300 ~~~~~~l~~~Gi~v~~~~~--~~lRi~~~~~~~~e~i~~~~~~l~~~~~~~~~~ 351 (374)
.++++.|+++||.+++++. +++||++++..+++++++++++|+++++ ++.+
T Consensus 375 ~~~~~~l~~~Gv~v~~~~~~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~-~~~~ 427 (439)
T 3dxv_A 375 AKLIYRAYQLGLVVYYVGMNGNVLEFTPPLTITETDIHKALDLLDRAFS-ELSA 427 (439)
T ss_dssp HHHHHHHHHHTEECEEESTTSCEEEECCCTTCCHHHHHHHHHHHHHHHH-TGGG
T ss_pred HHHHHHHHHCCcEEeecCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHH-HHhc
Confidence 7899999999999998754 8999999999999999999999999999 7754
No 19
>3ruy_A Ornithine aminotransferase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha and beta protein; HET: LLP; 2.65A {Bacillus anthracis} SCOP: c.67.1.0
Probab=100.00 E-value=8.3e-43 Score=328.17 Aligned_cols=333 Identities=49% Similarity=0.869 Sum_probs=288.5
Q ss_pred hHHHHHHHhccccCcCCCCCcHHHHHHHHhcccCCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCC
Q 017259 2 KALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFH 81 (374)
Q Consensus 2 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yh 81 (374)
+|+.+++++..+.+..++.+...+++++|++++|.+++++++||++|++.++++++.+++..+|.++++++|++..++||
T Consensus 59 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~v~~~~~gt~a~~~al~~~~~~~~~~~~~~~~~~~vi~~~~~~~ 138 (392)
T 3ruy_A 59 NALIDQANRVTLTSRAFHSDQLGPWYEKVAKLTNKEMVLPMNTGAEAVETAIKTARRWAYDVKKVEANRAEIIVCEDNFH 138 (392)
T ss_dssp HHHHHHHTTCSCCCTTSEETTHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHHHHHHHTSCCCTTCCEEEEETTCCC
T ss_pred HHHHHHHHhccccccccCCHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHHhhhhccCCCCCCcEEEEEcCCcC
Confidence 56667776666655567788999999999999999999999999999999999887543233444445589999999999
Q ss_pred CcccccccccCCccccccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhc
Q 017259 82 GRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKY 161 (374)
Q Consensus 82 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~ 161 (374)
|....+..+++.+.+...+.+...++..++++|+++|+++++ ++++++++++++|++|.+.++++++++|.++|++|
T Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~---~~~~~v~~~~~~nptG~~~~~~~~l~~i~~l~~~~ 215 (392)
T 3ruy_A 139 GRTMGAVSMSSNEEYKRGFGPMLPGIIVIPYGDLEALKAAIT---PNTAAFILEPIQGEAGINIPPAGFLKEALEVCKKE 215 (392)
T ss_dssp CSSHHHHHTCSCTTTTTTCCSCCSSEEEECTTCHHHHHHHCC---TTEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHTT
T ss_pred CCCHhhhhccCChhhccccCCCCCCCeeeCcccHHHHHHHhc---cCeEEEEEeCccCCCCCccCCHHHHHHHHHHHHHc
Confidence 999988888887778878888777888888889999999987 58999999999999999998888899999999999
Q ss_pred CCEEEEeccccCCcccccCcccccCCCCCcEEEecccccCC-ccchhhheeCHHHHhhcCCCCCCCCCCCCHHHHHHHHH
Q 017259 162 NILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGG-VIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIA 240 (374)
Q Consensus 162 ~i~li~Dea~~~~~~~g~~~~~~~~~~~~d~~s~sK~~~~G-~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~ 240 (374)
|++||+||+|+++++.|..+....++..+|+++|||+++|| + |+|++++++++.+.+.......+++.++++++++.+
T Consensus 216 ~~~li~De~~~~~~~~g~~~~~~~~~~~~d~~~~SK~l~gG~~-~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 294 (392)
T 3ruy_A 216 NVLFVADEIQTGLGRTGKVFACDWDNVTPDMYILGKALGGGVF-PISCAAANRDILGVFEPGSHGSTFGGNPLACAVSIA 294 (392)
T ss_dssp TCEEEEECTTTTTTTTSSSSGGGGGTCCCSEEEECGGGGTTTS-CCEEEEECHHHHTTCCTTSSCCSSTTCHHHHHHHHH
T ss_pred CCEEEEeechhCCCccccchhhhccCCCCCEEEEchhhhCChh-hhEEEEECHHHHhhhccCCcCCCCCCCHHHHHHHHH
Confidence 99999999999998888877777778889999999999999 7 999999999999999887788899999999999999
Q ss_pred HHHHHhhhcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCchhHHHHHHHHHHCCeEeccCCCCE
Q 017259 241 SLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTHDTI 320 (374)
Q Consensus 241 al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~~~ 320 (374)
+++.+..+++.++++++.+++.+.|+++. . +.+...++.+.++++.++. +..++.+.|.++||.+++++.++
T Consensus 295 ~l~~~~~~~~~~~~~~~~~~l~~~L~~~~--~-~~~~~~~~~g~~~~~~~~~-----~~~~l~~~l~~~gi~v~~~~~~~ 366 (392)
T 3ruy_A 295 ALEVLEEEKLTERSLQLGEKLVGQLKEID--N-PMITEVRGKGLFIGIELNE-----PARPYCEQLKAAGLLCKETHENV 366 (392)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHHHTTCC--C-TTEEEEEEETTEEEEEESS-----CSHHHHHHHHTTTEECCCBTTTE
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHhc--C-CCceEEEeeeeEEEEEEcc-----hHHHHHHHHHHCCcEEecCCCCE
Confidence 99988767788889999999988887652 1 2455667788999988764 35789999999999999998899
Q ss_pred EEEecCCCCCHHHHHHHHHHHHHHHh
Q 017259 321 VRLTPPLSISSNELQEGSKALHDVLE 346 (374)
Q Consensus 321 lRi~~~~~~~~e~i~~~~~~l~~~~~ 346 (374)
+|+++++..+++++++++++|+++++
T Consensus 367 iRi~~~~~~~~~~i~~~~~~l~~~l~ 392 (392)
T 3ruy_A 367 IRIAPPLVISEEDLEWAFQKIKAVLS 392 (392)
T ss_dssp EEECCCTTCCHHHHHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHhC
Confidence 99999999999999999999998763
No 20
>2cjg_A L-lysine-epsilon aminotransferase; internal aldimine, pyridoxal phosphate, PLP, RV3290C, lysine amino transferase; HET: PMP; 1.95A {Mycobacterium tuberculosis} PDB: 2cjd_A* 2cin_A* 2cjh_A* 2jjg_A* 2jje_A* 2jjh_A* 2jjf_A
Probab=100.00 E-value=1.6e-42 Score=331.68 Aligned_cols=335 Identities=28% Similarity=0.431 Sum_probs=277.3
Q ss_pred HHHH---HHHhccccCcCCCCCcHHHHHHHHhccc---CCCeEEecCChHHHHHHHHHHHHHcccccc----cCC-CCcc
Q 017259 3 ALQE---QAEKLTLSSRAFYNDKFPVFAERLTSMF---GYDMVLPMNTGAEGVETALKLARKWGYVKK----KFS-IDEA 71 (374)
Q Consensus 3 a~~~---~~~~~~~~~~~~~~~~~~~l~~~l~~~~---~~~~~~~~~~gs~a~~~al~~~~~~~~~~~----G~~-~~~~ 71 (374)
|+.+ +++++.++++.+..+...+++++|++++ +.++++|++||++|++.|+++++.+. ..+ |.+ ++++
T Consensus 80 A~~~~~~~~~~~~~~~~~~~~~~~~~la~~la~~~~~~~~~~v~~~~~gseA~~~aik~a~~~~-~~~~~~~~~~~~~~~ 158 (449)
T 2cjg_A 80 EFHAELMQAALNKPSNSDVYSVAMARFVETFARVLGDPALPHLFFVEGGALAVENALKAAFDWK-SRHNQAHGIDPALGT 158 (449)
T ss_dssp HHHHHHHHHHTCCCCTTTCCCHHHHHHHHHHHHHHCCTTCCEEEEESSHHHHHHHHHHHHHHHH-HHHHHHTTSCTTCCC
T ss_pred HHHHHHHHHHhcCCCCcccCCHHHHHHHHHHHHhcCCCCCCEEEEeCchHHHHHHHHHHHHHHh-cccccccccccCCCC
Confidence 7888 7877766555577788999999999987 56799999999999999999886442 111 111 1138
Q ss_pred EEEEeccCCCCcccccccccCC-ccccccCCCCCCCceeccCCC--HH-------------HHHHHHHhcCCcEEEEEEc
Q 017259 72 IIVSCCGCFHGRTLAAISMSCD-NEAIRGFGPLLPGHLKVDFGD--IT-------------ALEKIFKESGDQIAGFLFE 135 (374)
Q Consensus 72 ~vi~~~~~yhg~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~d--~~-------------~le~~l~~~~~~~~~vi~~ 135 (374)
+|++++++|||.+..+..+++. +.++.++.|...++..++++| .+ +|+++++++++++++++++
T Consensus 159 ~Vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~~vi~e 238 (449)
T 2cjg_A 159 QVLHLRGAFHGRSGYTLSLTNTKPTITARFPKFDWPRIDAPYMRPGLDEPAMAALEAEALRQARAAFETRPHDIACFVAE 238 (449)
T ss_dssp EEEEETTCCCCSSTTGGGTCCSCHHHHTTSCCCCCCEECCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHSTTTEEEEEEC
T ss_pred EEEEECCCcCCcccchhhhcCCchhhcccCCCCCCCcEEEcCCCchhhccccchhhHHHHHHHHHHHHhcCCceEEEEEe
Confidence 9999999999999988877765 455566666666677777766 43 3888887655689999999
Q ss_pred cccCCCCcccCChhHHHHHHHHHHhcCCEEEEeccccCCcccccCcccccCCCCCcEEEecccccCCccchhhheeCHHH
Q 017259 136 PIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEV 215 (374)
Q Consensus 136 ~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~~~~~~g~~~~~~~~~~~~d~~s~sK~~~~G~~~~G~~~~~~~~ 215 (374)
|++|++|.+.++++++++|.++|++||++||+||+|+|+++.|..+....+++.||++++||++ |+|++++++++
T Consensus 239 p~~~~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~~g~g~~g~~~~~~~~~~~~di~t~sK~l-----~iG~~~~~~~~ 313 (449)
T 2cjg_A 239 PIQGEGGDRHFRPEFFAAMRELCDEFDALLIFDEVQTGCGLTGTAWAYQQLDVAPDIVAFGKKT-----QVCGVMAGRRV 313 (449)
T ss_dssp SEETTTTCEECCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSTHHHHTCCCSEEEECGGG-----SSEEEEECGGG
T ss_pred CcCCCCCCccCCHHHHHHHHHHHHHCCcEEEEeccccCCCccCcceeecccCCCceEEEecCcc-----cEEEEEECHHH
Confidence 9999999888899999999999999999999999999999988876767778899999999987 68899999998
Q ss_pred Hhhc-----CCCCCCCCCCCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEe
Q 017259 216 MLCI-----QPGEHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEF 290 (374)
Q Consensus 216 ~~~~-----~~~~~~~~~~~~~~~~~aa~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~ 290 (374)
++.+ ....++.++++++++++++.++++.+.++++.++++++++++++.|+++...+|..+...++.|.++++++
T Consensus 314 ~~~l~~~~~~~~~~~~t~~~n~~~~~aa~aal~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~~~g~~~~~~~ 393 (449)
T 2cjg_A 314 DEVADNVFAVPSRLNSTWGGNLTDMVRARRILEVIEAEGLFERAVQHGKYLRARLDELAADFPAVVLDPRGRGLMCAFSL 393 (449)
T ss_dssp GGSTTCTTTSTTSSCCSSSSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHSTTTSEEEEEETTEEEEEC
T ss_pred hhhhhhcccCCcccccCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhCCCceeeEeeccEEEEEEE
Confidence 8863 33346678999999999999999988777899999999999999999886655422556778899999887
Q ss_pred ccCCCchhHHHHHHHHHHCCeEeccCCCCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 017259 291 DKTALPVSAYDICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVLE 346 (374)
Q Consensus 291 ~~~~~~~~~~~~~~~l~~~Gi~v~~~~~~~lRi~~~~~~~~e~i~~~~~~l~~~~~ 346 (374)
+... ...++++.|+++||.+.+++.+++|++|++.++++++++++++|+++++
T Consensus 394 ~~~~---~~~~~~~~l~~~Gv~v~~~g~~~iRi~~~~~~t~e~i~~~l~~l~~~l~ 446 (449)
T 2cjg_A 394 PTTA---DRDELIRQLWQRAVIVLPAGADTVRFRPPLTVSTAEIDAAIAAVRSALP 446 (449)
T ss_dssp SSHH---HHHHHHHHHHHTTEECEEETTTEEEECCCTTCCHHHHHHHHHHHHHHHH
T ss_pred CChH---HHHHHHHHHHHCCeEEecCCCCEEEEECCCCCCHHHHHHHHHHHHHHHH
Confidence 6421 4678999999999999998779999999999999999999999999987
No 21
>4adb_A Succinylornithine transaminase; transferase, PLP enzymes, aminotransferase; HET: PLP; 2.20A {Escherichia coli} PDB: 4adc_A* 4add_A* 4ade_A
Probab=100.00 E-value=8.6e-42 Score=322.58 Aligned_cols=340 Identities=32% Similarity=0.510 Sum_probs=289.0
Q ss_pred hHHHHHHHhccccCcCCCCCcHHHHHHHHhcccCCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCC
Q 017259 2 KALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFH 81 (374)
Q Consensus 2 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yh 81 (374)
+|+.+++.+..+....++.+...+++++|+++++.+++++++||++|++.++++++.++ ..+| .+++++|++.+|+||
T Consensus 62 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~v~~~~gg~~a~~~al~~~~~~~-~~~~-~~g~~~vi~~~~~y~ 139 (406)
T 4adb_A 62 EALNEQASKFWHTGNGYTNEPVLRLAKKLIDATFADRVFFCNSGAEANEAALKLARKFA-HDRY-GSHKSGIVAFKNAFH 139 (406)
T ss_dssp HHHHHHHTTCSCCCTTSCCHHHHHHHHHHHHHSSCSEEEEESSHHHHHHHHHHHHHHHH-HHHT-CTTCCEEEEETTCCC
T ss_pred HHHHHHHHhcccccCCcCCHHHHHHHHHHHhhCCCCeEEEeCcHHHHHHHHHHHHHHHH-HhcC-CCCCcEEEEECCCcC
Confidence 56677776665655556788899999999999999999999999999999999886432 1111 123489999999999
Q ss_pred CcccccccccCCccccccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhc
Q 017259 82 GRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKY 161 (374)
Q Consensus 82 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~ 161 (374)
+....+...++.+.+...+.+...++..++++|+++|+++++ +++++++++|.++.+|.+.++.+.+++|.++|++|
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~---~~~~~v~~~p~np~g~~~~~~~~~l~~l~~l~~~~ 216 (406)
T 4adb_A 140 GRTLFTVSAGGQPAYSQDFAPLPADIRHAAYNDINSASALID---DSTCAVIVEPIQGEGGVVPASNAFLQGLRELCNRH 216 (406)
T ss_dssp CSSHHHHHHSSCGGGTGGGCSCCSSEEEECTTCHHHHHTTCS---TTEEEEEECSEETTTTSEECCHHHHHHHHHHHHHT
T ss_pred CCcHHHhhccCCccccccCCCCCCCceEeCCCcHHHHHHHhc---CCeEEEEEeCCcCCCCCccCCHHHHHHHHHHHHHc
Confidence 999888888887777777777777888889899999999887 58999999976655666666899999999999999
Q ss_pred CCEEEEeccccCCcccccCcccccCCCCCcEEEecccccCCccchhhheeCHHHHhhcCCCCCCCCCCCCHHHHHHHHHH
Q 017259 162 NILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIAS 241 (374)
Q Consensus 162 ~i~li~Dea~~~~~~~g~~~~~~~~~~~~d~~s~sK~~~~G~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~a 241 (374)
|++||+||+|+++++.|..+....++..+|+++|||.+++|+ |+||+++++++.+.+.......+++.++++++++.++
T Consensus 217 ~~~li~De~~~~~~~~g~~~~~~~~~~~~d~~t~sK~~~~G~-r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 295 (406)
T 4adb_A 217 NALLIFDEVQTGVGRTGELYAYMHYGVTPDLLTTAKALGGGF-PVGALLATEECARVMTVGTHGTTYGGNPLASAVAGKV 295 (406)
T ss_dssp TCEEEEECTTTTTTTTSSSSHHHHHTCCCSEEEECGGGGTTS-CCEEEEECHHHHHTCCTTSSCCSSTTCHHHHHHHHHH
T ss_pred CCEEEEeccccCCCccchhHHHHhcCCCCCEEEechhhcCCC-CeEEEEEcHHHHhhhccCCcCCCCCCCHHHHHHHHHH
Confidence 999999999999988888777677788899999999999998 9999999999999998877788999999999999999
Q ss_pred HHHHhhhcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCchhHHHHHHHHHHCCeEeccCCCCEE
Q 017259 242 LDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTHDTIV 321 (374)
Q Consensus 242 l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~~~l 321 (374)
++.+..+++.++++++++++.+.|+++...+ ......++.+.++++.++... ..+..++++.|.++||.+++.+.+++
T Consensus 296 l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~-~~~~~~~~~g~~~~~~~~~~~-~~~~~~~~~~l~~~gi~v~~~~~~~i 373 (406)
T 4adb_A 296 LELINTPEMLNGVKQRHDWFVERLNTINHRY-GLFSEVRGLGLLIGCVLNADY-AGQAKQISQEAAKAGVMVLIAGGNVV 373 (406)
T ss_dssp HHHHSSHHHHHHHHHHHHHHHHHHHHHHHHH-CCEEEEEEETTEEEEEECTTT-TTCHHHHHHHHHHTTEECEESSTTEE
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHHHHHHHhC-CCceEEEEEEEEEEEEEeCCc-HHHHHHHHHHHHHCCcEEeecCCCeE
Confidence 9988777889999999999999999886554 355566778899999886531 01478899999999999999888999
Q ss_pred EEecCCCCCHHHHHHHHHHHHHHHhccCC
Q 017259 322 RLTPPLSISSNELQEGSKALHDVLELDLP 350 (374)
Q Consensus 322 Ri~~~~~~~~e~i~~~~~~l~~~~~~~~~ 350 (374)
|++++...+++++++++++|+++++ ++.
T Consensus 374 Ri~~~~~~~~e~i~~~~~~l~~~l~-~~~ 401 (406)
T 4adb_A 374 RFAPALNVSEEEVTTGLDRFAAACE-HFV 401 (406)
T ss_dssp EECCCTTCCHHHHHHHHHHHHHHHH-HHH
T ss_pred EEECCCCCCHHHHHHHHHHHHHHHH-HHH
Confidence 9999999999999999999999998 653
No 22
>3l44_A Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha beta class, PLP-dependent transferase-like, bacillus A csgid, porphyrin biosynthesis; HET: LLP; 2.05A {Bacillus anthracis} SCOP: c.67.1.0
Probab=100.00 E-value=1.2e-41 Score=324.66 Aligned_cols=332 Identities=26% Similarity=0.376 Sum_probs=273.7
Q ss_pred hHHHHHHHhccccCcCCCCCcHHHHHHHHhccc-CCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCC
Q 017259 2 KALQEQAEKLTLSSRAFYNDKFPVFAERLTSMF-GYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCF 80 (374)
Q Consensus 2 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~y 80 (374)
+|+.+++.++.. ..++.+...+++++|++.+ +.++++|++||++|++.|+++++.+. ++ ++|++++++|
T Consensus 78 ~a~~~~~~~~~~--~~~~~~~~~~l~~~la~~~~~~~~v~~~~sGsea~~~ai~~a~~~~---~~-----~~vi~~~~~y 147 (434)
T 3l44_A 78 KAITTAAENGVL--YGTPTALEVKFAKMLKEAMPALDKVRFVNSGTEAVMTTIRVARAYT---GR-----TKIMKFAGCY 147 (434)
T ss_dssp HHHHHHHHHCSC--CSSCCHHHHHHHHHHHHHCTTCSEEEEESSHHHHHHHHHHHHHHHH---CC-----CEEEEETTCC
T ss_pred HHHHHHHHhCcC--CCCCCHHHHHHHHHHHHhCCCCCEEEEeCchHHHHHHHHHHHHHhh---CC-----CEEEEEcCcc
Confidence 567777776532 2366888899999999987 78899999999999999999987431 23 8999999999
Q ss_pred CCcccccccccCCccccccC--CCC-----CCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHH
Q 017259 81 HGRTLAAISMSCDNEAIRGF--GPL-----LPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKA 153 (374)
Q Consensus 81 hg~~~~~~~~~~~~~~~~~~--~~~-----~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~ 153 (374)
||.+..+...++.+...... .+. ..++..++++|+++|+++++++++++++++++|+++++|.+.++++++++
T Consensus 148 hg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~ 227 (434)
T 3l44_A 148 HGHSDLVLVAAGSGPSTLGTPDSAGVPQSIAQEVITVPFNNVETLKEALDKWGHEVAAILVEPIVGNFGIVEPKPGFLEK 227 (434)
T ss_dssp CCSSGGGGBC-------CCCBSSTTCCHHHHTTEEEECTTCHHHHHHHHHHHGGGEEEEEECSSBCTTSCBCCCTTHHHH
T ss_pred CCCcHHHHhhcCCcccccCCCCcCCCCCcCCCceEecCcccHHHHHHHHHhCCCCEEEEEEcCCCCCCCCccCCHHHHHH
Confidence 99988877766543221111 000 12466778889999999998766689999999999999999999999999
Q ss_pred HHHHHHhcCCEEEEeccccCCcccccCcccccCCCCCcEEEecccccCCccchhhheeCHHHHhhcCC---CCCCCCCCC
Q 017259 154 VRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQP---GEHGSTFGG 230 (374)
Q Consensus 154 l~~l~~~~~i~li~Dea~~~~~~~g~~~~~~~~~~~~d~~s~sK~~~~G~~~~G~~~~~~~~~~~~~~---~~~~~~~~~ 230 (374)
|.++|++||++||+||+|+|| +.|..++...+++.||+++|||++++|+ |+|++++++++++.+.. ..++.+|++
T Consensus 228 l~~l~~~~~illI~DEv~~g~-~~g~~~~~~~~~~~~di~t~sK~~~~G~-~iG~~~~~~~i~~~~~~~~~~~~~~t~~~ 305 (434)
T 3l44_A 228 VNELVHEAGALVIYDEVITAF-RFMYGGAQDLLGVTPDLTALGKVIGGGL-PIGAYGGKKEIMEQVAPLGPAYQAGTMAG 305 (434)
T ss_dssp HHHHHHTTTCEEEEECTTTTT-TSSSSCHHHHHTCCCSEEEEEGGGGTTS-SCEEEEECHHHHTTBTTTSSBCCCCTTTT
T ss_pred HHHHHHHcCCEEEEeccccce-eccccHHHHHcCCCCCeeehhhhhcCCc-CeeeEEEcHHHHHhhccCCCcccCCCCCc
Confidence 999999999999999999999 8888777778889999999999999998 99999999999998876 346778999
Q ss_pred CHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCC----------chhHH
Q 017259 231 NPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTAL----------PVSAY 300 (374)
Q Consensus 231 ~~~~~~aa~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----------~~~~~ 300 (374)
++++++++.++++.+.++++.++++++.+++++.|+++...+ +.+...++.|.++++.+..... .....
T Consensus 306 ~~~a~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (434)
T 3l44_A 306 NPASMASGIACLEVLQQEGLYEKLDELGATLEKGILEQAAKH-NIDITLNRLKGALTVYFTTNTIEDYDAAQDTDGEMFG 384 (434)
T ss_dssp CHHHHHHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHHHT-TCCEEEEEETTEEEEEESSSCCCSHHHHHHSCHHHHH
T ss_pred CHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHhC-CCCEEEEeeccEEEEEEecCcccchhhccccCHHHHH
Confidence 999999999999988777899999999999999999987665 3666778889999998843210 11346
Q ss_pred HHHHHHHHCCeEeccCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhccC
Q 017259 301 DICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVLELDL 349 (374)
Q Consensus 301 ~~~~~l~~~Gi~v~~~~~~~lRi~~~~~~~~e~i~~~~~~l~~~~~~~~ 349 (374)
++.+.|+++||.+++++.+.+|++ +..+++++++++++|+++++ ++
T Consensus 385 ~~~~~l~~~Gv~v~~~~~~~~rl~--~~~t~e~i~~~l~~l~~~l~-~~ 430 (434)
T 3l44_A 385 KFFKLMLQEGVNLAPSKYEAWFLT--TEHTKEDIEYTIEAVGRAFA-AL 430 (434)
T ss_dssp HHHHHHHHTTEECCSSTTCCEECC--TTCCHHHHHHHHHHHHHHHH-HH
T ss_pred HHHHHHHHCCeEEeecCCCcEEEe--cccCHHHHHHHHHHHHHHHH-HH
Confidence 799999999999999877888986 78999999999999999998 65
No 23
>3a8u_X Omega-amino acid--pyruvate aminotransferase; large pleated sheet, transaminase, pyridox phosphate; HET: PLP; 1.40A {Pseudomonas putida}
Probab=100.00 E-value=1.3e-41 Score=325.68 Aligned_cols=341 Identities=25% Similarity=0.426 Sum_probs=269.7
Q ss_pred hHHHHHHHhccccCc-CCCCCcHHHHHHHHhccc--CCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEecc
Q 017259 2 KALQEQAEKLTLSSR-AFYNDKFPVFAERLTSMF--GYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCG 78 (374)
Q Consensus 2 ~a~~~~~~~~~~~~~-~~~~~~~~~l~~~l~~~~--~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~ 78 (374)
+|+.+++.+...... .+..+...+++++|++++ +.+++++++||++|++.++++++.+. ..+| .+++++|+++++
T Consensus 73 ~a~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~v~~~~ggsea~~~al~~~~~~~-~~~g-~~~~~~vi~~~~ 150 (449)
T 3a8u_X 73 EAVAKQLSTLDYSPGFQYGHPLSFQLAEKITDLTPGNLNHVFFTDSGSECALTAVKMVRAYW-RLKG-QATKTKMIGRAR 150 (449)
T ss_dssp HHHHHHTTTCSCCCSSSCCCHHHHHHHHHHHTTSSTTEEEEEEESSHHHHHHHHHHHHHHHH-HHTT-CTTCCEEEEETT
T ss_pred HHHHHHHHhCCCccccccCCHHHHHHHHHHHHhCCCCCCEEEEcCcHHHHHHHHHHHHHHHH-HhcC-CCCCCEEEEECC
Confidence 456666655431111 466778899999999988 56799999999999999999987543 2222 223389999999
Q ss_pred CCCCcccccccccCCccccccCCCCCCCceeccCC----------C--------HHHHHHHHHhcC-CcEEEEEEccccC
Q 017259 79 CFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFG----------D--------ITALEKIFKESG-DQIAGFLFEPIQG 139 (374)
Q Consensus 79 ~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------d--------~~~le~~l~~~~-~~~~~vi~~~~~~ 139 (374)
+||+.+..+..+++.+.++.++.+...++..++.+ | +++|++++++++ +++++++++|+++
T Consensus 151 ~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~vi~~p~~~ 230 (449)
T 3a8u_X 151 GYHGVNIAGTSLGGVNGNRKLFGQPMQDVDHLPHTLLASNAYSRGMPKEGGIALADELLKLIELHDASNIAAVFVEPLAG 230 (449)
T ss_dssp CCCCSSHHHHHHCCCHHHHTTTCCCSCSEEEECCCCCGGGTTCSSSCSSSHHHHHHHHHHHHHHHCGGGEEEEEECSSBT
T ss_pred CcCCCChhhhhccCChhhccccCCCCCCCeEecCCccccCccccCChHHHHHHHHHHHHHHHHhcCCCCEEEEEEcCccC
Confidence 99999877666665544444444443343333221 4 889999998653 4789999999988
Q ss_pred CCCcccCChhHHHHHHHHHHhcCCEEEEeccccCCcccccCcccccCCCCCcEEEecccccCC-ccchhhheeCHHHHhh
Q 017259 140 EAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGG-VIPVSAVLADKEVMLC 218 (374)
Q Consensus 140 ~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~~~~~~g~~~~~~~~~~~~d~~s~sK~~~~G-~~~~G~~~~~~~~~~~ 218 (374)
++|.+.++++++++|.++|++||++||+||+|++|++.|..+..+.+++.||++|+||++++| + |+|++++++++++.
T Consensus 231 ~tG~~~~~~~~l~~l~~l~~~~~~~li~Dev~~~~g~~g~~~~~~~~~~~~di~s~sK~l~~G~~-~~G~~~~~~~~~~~ 309 (449)
T 3a8u_X 231 SAGVLVPPEGYLKRNREICNQHNILLVFDEVITGFGRTGSMFGADSFGVTPDLMCIAKQVTNGAI-PMGAVIASTEIYQT 309 (449)
T ss_dssp TTTCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSHHHHHTCCCSEEEECGGGGTTSS-CCEEEEEEHHHHHH
T ss_pred CCCCccCCHHHHHHHHHHHHHhCCEEEEeccccCccccCcchhhhhcCCCCCEEEEcccccCCCC-ceEEEEECHHHHHH
Confidence 899889899999999999999999999999999998888766666778889999999999988 7 99999999998888
Q ss_pred cCCC---------CCCCCCCCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEE
Q 017259 219 IQPG---------EHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVE 289 (374)
Q Consensus 219 ~~~~---------~~~~~~~~~~~~~~aa~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~ 289 (374)
+... .+..++++++++++++.++++.+.++++.++++++.+++++.|+++ ..++ .+...++.|.++++.
T Consensus 310 l~~~~~~~~~~~~~~~~t~~~~~~~~aa~~aal~~~~~~~~~~~~~~~~~~l~~~L~~l-~~~~-~~~~~~~~g~~~~i~ 387 (449)
T 3a8u_X 310 FMNQPTPEYAVEFPHGYTYSAHPVACAAGLAALCLLQKENLVQSVAEVAPHFEKALHGI-KGAK-NVIDIRNFGLAGAIQ 387 (449)
T ss_dssp HHTCSSCTTSCSSCCCCTTTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHTT-TTST-TEEEEEEETTEEEEE
T ss_pred hhccCcccccccccccCCCcccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHH-hcCC-CeEEEeeeEEEEEEE
Confidence 7653 3456889999999999999998877788999999999999999874 2343 555567789999998
Q ss_pred eccCCCch--hHHHHHHHHHHCCeEeccCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhccC
Q 017259 290 FDKTALPV--SAYDICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVLELDL 349 (374)
Q Consensus 290 ~~~~~~~~--~~~~~~~~l~~~Gi~v~~~~~~~lRi~~~~~~~~e~i~~~~~~l~~~~~~~~ 349 (374)
++...... +..++.+.|+++||.+++++ +++||+|++..+++++++++++|+++++ ++
T Consensus 388 ~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~g-~~iRis~~~~~t~~~i~~~l~~l~~~l~-~~ 447 (449)
T 3a8u_X 388 IAPRDGDAIVRPFEAGMALWKAGFYVRFGG-DTLQFGPTFNSKPQDLDRLFDAVGEVLN-KL 447 (449)
T ss_dssp ECCBTTBSSHHHHHHHHHHHHHTEECEEET-TEEEECCCTTCCHHHHHHHHHHHHHHHH-HC
T ss_pred EecCcccccccHHHHHHHHHHCCcEEecCC-CEEEEECCCcCCHHHHHHHHHHHHHHHH-HH
Confidence 86432111 23379999999999999975 8999999999999999999999999987 54
No 24
>1zod_A DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, cesium, lyase; HET: MES PLP; 1.80A {Burkholderia cepacia} SCOP: c.67.1.4 PDB: 1dka_A* 1m0o_A* 1m0p_A* 1m0n_A* 1zc9_A* 1zob_A* 1m0q_A* 2dkb_A* 1dgd_A* 1dge_A* 1d7u_A* 1d7s_A* 1d7r_A* 1d7v_A* 1z3z_A*
Probab=100.00 E-value=4.7e-41 Score=320.35 Aligned_cols=334 Identities=29% Similarity=0.482 Sum_probs=269.2
Q ss_pred hHHHHHHHhccccCcCCCCCcHHHHHHHHhcccC--CCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccC
Q 017259 2 KALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFG--YDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGC 79 (374)
Q Consensus 2 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~ 79 (374)
+|+.++++++.+....++.+...+++++|++.++ .+++++++||++|++.++++++.+ +| +++|++++|+
T Consensus 66 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~v~~~~gg~ea~~~a~~~~~~~----~~----~~~vi~~~~~ 137 (433)
T 1zod_A 66 SVIGEYAGKLDHLFSEMLSRPVVDLATRLANITPPGLDRALLLSTGAESNEAAIRMAKLV----TG----KYEIVGFAQS 137 (433)
T ss_dssp HHHHHHHHHCCCCCTTCCCHHHHHHHHHHHHHSCTTCCEEEEESCHHHHHHHHHHHHHHH----HT----CCEEEEETTC
T ss_pred HHHHHHHHhCcccccccCCHHHHHHHHHHHHhCCCCcCEEEEeCchHHHHHHHHHHHHHh----hC----CCeEEEECCC
Confidence 5777787776544445667788999999999884 679999999999999999987532 12 2799999999
Q ss_pred CCCcccccccccCCccccccCCCCCCCceecc--------CC---------CHHHHHHHHHhcC-CcEEEEEEccccCCC
Q 017259 80 FHGRTLAAISMSCDNEAIRGFGPLLPGHLKVD--------FG---------DITALEKIFKESG-DQIAGFLFEPIQGEA 141 (374)
Q Consensus 80 yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~---------d~~~le~~l~~~~-~~~~~vi~~~~~~~~ 141 (374)
|||....+...++.+ +...+.+...++..++ ++ |+++|++++++++ +++++++++|++|++
T Consensus 138 yhg~~~~~~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~~vi~~p~~~~~ 216 (433)
T 1zod_A 138 WHGMTGAAASATYSA-GRKGVGPAAVGSFAIPAPFTYRPRFERNGAYDYLAELDYAFDLIDRQSSGNLAAFIAEPILSSG 216 (433)
T ss_dssp CCCSSHHHHHTCCSS-CCSSSCCCCTTEEEECCCCTTSCCCEETTEECHHHHHHHHHHHHHHHCCSCEEEEEECSEETTT
T ss_pred cCCCChhHHhhcCCc-cccccCCCCCCceEecCCcccccccCCchhhhHHHHHHHHHHHHHhcCCCCeEEEEEccccCCC
Confidence 999988776655432 2223333333333332 22 3889999998642 578999999998889
Q ss_pred CcccCChhHHHHHHHHHHhcCCEEEEeccccCCcccccCcccccCCCCCcEEEecccccCCccchhhheeCHHHHhhcCC
Q 017259 142 GVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQP 221 (374)
Q Consensus 142 g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~~~~~~g~~~~~~~~~~~~d~~s~sK~~~~G~~~~G~~~~~~~~~~~~~~ 221 (374)
|.+.++++++++|.++|++||++||+||+|++|++.|..+..+.++..||++|+||++++|+ |+||+++++++++.+..
T Consensus 217 G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~~~g~~g~~~~~~~~~~~~di~s~sK~~~~G~-~ig~~~~~~~~~~~~~~ 295 (433)
T 1zod_A 217 GIIELPDGYMAALKRKCEARGMLLILDEAQTGVGRTGTMFACQRDGVTPDILTLSKTLGAGL-PLAAIVTSAAIEERAHE 295 (433)
T ss_dssp TCEECCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSTHHHHTCCCSEEEECHHHHTTS-SCEEEEECHHHHHHHHH
T ss_pred CcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCcCchHhHHhhcCCCCCEEEecccccCCC-CeeEEEEhHHHHHhhcc
Confidence 98888999999999999999999999999999988887666666788899999999999998 99999999998888765
Q ss_pred CC--CCCCCCCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCC----
Q 017259 222 GE--HGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTAL---- 295 (374)
Q Consensus 222 ~~--~~~~~~~~~~~~~aa~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~---- 295 (374)
.. ++.++++++++++++.++++.+.++++.++++++++++++.|+++...+| .+...++.|.++++.++....
T Consensus 296 ~~~~~~~t~~~~~~~~~a~~aal~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~-~~~~~~~~g~~~~i~~~~~~~~~~~ 374 (433)
T 1zod_A 296 LGYLFYTTHVSDPLPAAVGLRVLDVVQRDGLVARANVMGDRLRRGLLDLMERFD-CIGDVRGRGLLLGVEIVKDRRTKEP 374 (433)
T ss_dssp TTCCCCCTTTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCT-TEEEEEEETTEEEEEEEEETTTTEE
T ss_pred CCCCCCCCCCcCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHhCC-CeEEEEEEEEEEEEEEecCccccCC
Confidence 32 34788999999999999999887778999999999999999998765554 556677889999998753200
Q ss_pred -chhHHHHHHHHHHCCeEeccCC--C--CEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 017259 296 -PVSAYDICLKMKERGILAKPTH--D--TIVRLTPPLSISSNELQEGSKALHDVLE 346 (374)
Q Consensus 296 -~~~~~~~~~~l~~~Gi~v~~~~--~--~~lRi~~~~~~~~e~i~~~~~~l~~~~~ 346 (374)
.....++.+.|+++||.+.++. . +++||++++..+++++++++++|+++++
T Consensus 375 ~~~~~~~~~~~l~~~Gv~v~~~~~~~~~~~lRi~~~~~~t~~~i~~~l~~l~~~l~ 430 (433)
T 1zod_A 375 ADGLGAKITRECMNLGLSMNIVQLPGMGGVFRIAPPLTVSEDEIDLGLSLLGQAIE 430 (433)
T ss_dssp CTTHHHHHHHHHHHTTEECCEECCTTSCCEEEECCCTTCCHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHCCCeEeccCCCCCCCEEEEECCcCCCHHHHHHHHHHHHHHHH
Confidence 0147789999999999998864 2 8999999999999999999999999887
No 25
>4a0g_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; BIO3-BIO1, biotin synthesis; HET: PLP; 2.50A {Arabidopsis thaliana} PDB: 4a0h_A* 4a0r_A* 4a0f_A*
Probab=100.00 E-value=1.2e-42 Score=351.39 Aligned_cols=344 Identities=22% Similarity=0.329 Sum_probs=273.1
Q ss_pred hHHHHHHHhccccCc-CCCCCcHHHHHHHHhcccC---CCeEEecCChHHHHHHHHHHH-HHcccccccCC-------CC
Q 017259 2 KALQEQAEKLTLSSR-AFYNDKFPVFAERLTSMFG---YDMVLPMNTGAEGVETALKLA-RKWGYVKKKFS-------ID 69 (374)
Q Consensus 2 ~a~~~~~~~~~~~~~-~~~~~~~~~l~~~l~~~~~---~~~~~~~~~gs~a~~~al~~~-~~~~~~~~G~~-------~~ 69 (374)
+|+++|++++.+..+ .+.++...+|+++|++..+ .++++|++|||+|++.|++++ +.|+ ..+|.+ ++
T Consensus 404 ~Ai~~Q~~~l~h~~~~~~~~~~~~~Lae~L~~~~p~~~l~~vff~~SGSeA~E~AlK~A~r~~~-~~~g~~~~~~~~~~~ 482 (831)
T 4a0g_A 404 REMGYTAARFGHVMFPENVYEPALKCAELLLDGVGKGWASRVYFSDNGSTAIEIALKMAFRKFC-VDHNFCEATEEEKHI 482 (831)
T ss_dssp HHHHHHHHHHSSCCCTTEECHHHHHHHHHHHHTTTTTTCCEEEEESSHHHHHHHHHHHHHHHHH-HTTTC---------C
T ss_pred HHHHHHHhhcccccccccCCHHHHHHHHHHHHhCCCCCCCEEEECCChhHHHHHHHHHHHHHHH-hhcCCCccccccccC
Confidence 789999999888653 3568889999999999885 679999999999999999999 5554 344422 15
Q ss_pred ccEEEEeccCCCCcccccccccCCcccccc-CCCCC---------------CCceec--c------------CCC-----
Q 017259 70 EAIIVSCCGCFHGRTLAAISMSCDNEAIRG-FGPLL---------------PGHLKV--D------------FGD----- 114 (374)
Q Consensus 70 ~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~-~~~~~---------------~~~~~~--~------------~~d----- 114 (374)
+.+||.+..+|||.+.++.++++...++.. ..++. .++..+ | +++
T Consensus 483 r~~iI~~~~syHG~T~gals~tg~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 562 (831)
T 4a0g_A 483 VVKVIALRGSYHGDTLGAMEAQAPSPYTGFLQQPWYTGRGLFLDPPTVFLSNGSWNISLPESFSEIAPEYGTFTSRDEIF 562 (831)
T ss_dssp CEEEEEETTCCCCSSHHHHHTSCCCGGGSTTTCTTCCCCEEEECCCEEEEETTEEEEECCTTSCCCCSSTTEESCHHHHH
T ss_pred ccEEEEecCCcccCceeeeeccCccccccccccccccCCccccCCccccccCCceEecCCccccccccccccccchhhhh
Confidence 689999999999999999999886555431 01110 011111 1 122
Q ss_pred -------------HHHHHHHHHh-----cCCcEEEEEEccc-cCCCCcccCChhHHHHHHHHHHhcCCEEEEeccccCCc
Q 017259 115 -------------ITALEKIFKE-----SGDQIAGFLFEPI-QGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLA 175 (374)
Q Consensus 115 -------------~~~le~~l~~-----~~~~~~~vi~~~~-~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~~~~ 175 (374)
.+.|++.|++ +++++++|++||+ ++.+|.+.++++++++|.++|++||++||+||+++|||
T Consensus 563 ~~~~~~~~~~~~~~~~le~~l~~~~~~~~~~~iaavi~Epvvqg~gG~~~~~~~~L~~l~~lc~~~gilLI~DEV~tGfG 642 (831)
T 4a0g_A 563 DKSRDASTLARIYSAYLSKHLQEHSGVRQSAHVGALIIEPVIHGAGGMHMVDPLFQRVLVNECRNRKIPVIFDEVFTGFW 642 (831)
T ss_dssp CGGGGGSHHHHHHHHHHHHHC---------CEEEEEEECCSEETTTTSEEECHHHHHHHHHHHHHTTCCEEEECTTTTTT
T ss_pred cccccchhhhHHHHHHHHHHHHhhhhhcCCCcEEEEEEecccccCCCCccCCHHHHHHHHHHHHHcCCeEEEEcCccccc
Confidence 2567777753 3578999999997 99999999999999999999999999999999999999
Q ss_pred ccccCcccccCCCCCcEEEecccccCCccchhhheeCHHHHhhcCCC------CCCCCCCCCHHHHHHHHHHHHHHhhhc
Q 017259 176 RSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPG------EHGSTFGGNPLASAVAIASLDVIRDEK 249 (374)
Q Consensus 176 ~~g~~~~~~~~~~~~d~~s~sK~~~~G~~~~G~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~aa~~al~~~~~~~ 249 (374)
++|..|+++++++.||++++||+++||++|+|++++++++++.+... .+++||+++++++++++++|+.+++++
T Consensus 643 RtG~~fa~e~~gv~PDiitlsK~L~gG~~Plgav~~~~~i~~~~~~~~~~~~~~hg~T~~g~Pla~Aaala~L~~i~~~~ 722 (831)
T 4a0g_A 643 RLGVETTTELLGCKPDIACFAKLLTGGMVPLAVTLATDAVFDSFSGDSKLKALLHGHSYSAHAMGCATAAKAIQWFKDPE 722 (831)
T ss_dssp TTSBSSTHHHHSSCCSEEEECGGGGTTSSCCEEEEECHHHHHTTCSSCGGGSCCCCCTTTTCHHHHHHHHHHHHHHHCTT
T ss_pred cCCCchhhHhcCCCCcEEEEecccccCccCcEEEEECHHHHHHHhcccccccceeecCCcccHHHHHHHHHHHHHHHhhH
Confidence 99999998899999999999999999944999999999999988753 378899999999999999999998777
Q ss_pred HHHHHHHHHHHHHH----HHHHHHHhCCCceeeEEEEeeeEEEEeccCCC-----chhHHHHHHHHHHCCeEeccCCCCE
Q 017259 250 LAERSAHLGEELRQ----HLFKIQQQFPNYVKEVRGRGLFNAVEFDKTAL-----PVSAYDICLKMKERGILAKPTHDTI 320 (374)
Q Consensus 250 ~~~~~~~~~~~~~~----~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-----~~~~~~~~~~l~~~Gi~v~~~~~~~ 320 (374)
+.++++++.+++++ .+.+....+ +.+..+++.|.++++++..+.. .....++.+.|+++||++++. ++.
T Consensus 723 l~~~~~~~~~~l~~~l~~~l~~~l~~~-~~v~~vrg~Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~e~Gv~v~p~-g~~ 800 (831)
T 4a0g_A 723 TNHNITSQGKTLRELWDEELVQQISSH-SAVQRVVVIGTLFALELKADASNSGYASLYAKSLLIMLREDGIFTRPL-GNV 800 (831)
T ss_dssp TCTTBCTTSSBBCCCSCHHHHHHHHHS-TTEEEEEEETTEEEEEEC---------CHHHHHHHHHHHHTTEECCCB-TTE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhC-CCceeEeecccEEEEEEecCccccccchHHHHHHHHHHHHCCcEEEec-CCE
Confidence 77666555555432 333333445 4788899999999999854310 124667999999999999987 589
Q ss_pred EEEecCCCCCHHHHHHHHHHHHHHHhccC
Q 017259 321 VRLTPPLSISSNELQEGSKALHDVLELDL 349 (374)
Q Consensus 321 lRi~~~~~~~~e~i~~~~~~l~~~~~~~~ 349 (374)
+|++|++.+|++++++++++|.++++ ++
T Consensus 801 lrl~pp~~~t~e~id~~~~~l~~~l~-~l 828 (831)
T 4a0g_A 801 IYLMCGPCTSPEICRRLLTKLYKRLG-EF 828 (831)
T ss_dssp EEEECCTTCCHHHHHHHHHHHHHHHT-TT
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHH-Hh
Confidence 99999999999999999999999998 65
No 26
>3k28_A Glutamate-1-semialdehyde 2,1-aminomutase 2; biosynthesis of cofactors, prosthetic groups, and carriers, csgid, cytoplasm, isomerase; HET: MSE PLP; 1.95A {Bacillus anthracis str} SCOP: c.67.1.4 PDB: 3bs8_A*
Probab=100.00 E-value=4e-41 Score=320.43 Aligned_cols=331 Identities=25% Similarity=0.376 Sum_probs=274.0
Q ss_pred hHHHHHHHhccccCcCCCCCcHHHHHHHHhccc-CCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCC
Q 017259 2 KALQEQAEKLTLSSRAFYNDKFPVFAERLTSMF-GYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCF 80 (374)
Q Consensus 2 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~y 80 (374)
+|+.++++++.+. .++++...+++++|++++ +.++++|++||++|++.|+++++.+. . +++|++++++|
T Consensus 76 ~A~~~~~~~~~~~--~~~~~~~~~l~~~la~~~~~~~~v~~~~~Gsea~~~ai~~a~~~~---~-----~~~vi~~~~~y 145 (429)
T 3k28_A 76 EALKAVAERGTSF--GAPTEIENKLAKLVIERVPSIEIVRMVNSGTEATMSALRLARGYT---G-----RNKILKFIGCY 145 (429)
T ss_dssp HHHHHHHHHCSCC--SSCCHHHHHHHHHHHHHSTTCSEEEEESSHHHHHHHHHHHHHHHH---T-----CCEEEEEETCC
T ss_pred HHHHHHHhhCcCc--CCCCHHHHHHHHHHHHhCCCCCEEEEeCChHHHHHHHHHHHHHhh---C-----CCEEEEECCCc
Confidence 5777787776442 366788899999999987 78899999999999999999987431 2 38999999999
Q ss_pred CCcccccccccCCccccccC--CCCC-----CCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHH
Q 017259 81 HGRTLAAISMSCDNEAIRGF--GPLL-----PGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKA 153 (374)
Q Consensus 81 hg~~~~~~~~~~~~~~~~~~--~~~~-----~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~ 153 (374)
||.+..+...++........ .+.. ..+..++++|+++++++++++++++++++++|+++++|.+.++++++++
T Consensus 146 hg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~ 225 (429)
T 3k28_A 146 HGHGDSLLIKAGSGVATLGLPDSPGVPEGVAKNTITVAYNDLESVKYAFEQFGDDIACVIVEPVAGNMGVVPPQPGFLEG 225 (429)
T ss_dssp CCSCGGGCSSCCTTC-----CCCTTCCHHHHTTEEEEETTCHHHHHHHHHHHGGGEEEEEECSSBCTTSCBCCCTTHHHH
T ss_pred CCCcHHHHHhcCCcccccCCCCcCCCCCcccCceeecCCCCHHHHHHHHHhCCCCEEEEEEcCCCCCCCcccCCHHHHHH
Confidence 99988877665543222111 0100 1456678889999999998766789999999999999999999999999
Q ss_pred HHHHHHhcCCEEEEeccccCCcccccCcccccCCCCCcEEEecccccCCccchhhheeCHHHHhhcCCC---CCCCCCCC
Q 017259 154 VRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPG---EHGSTFGG 230 (374)
Q Consensus 154 l~~l~~~~~i~li~Dea~~~~~~~g~~~~~~~~~~~~d~~s~sK~~~~G~~~~G~~~~~~~~~~~~~~~---~~~~~~~~ 230 (374)
|.++|++||++||+||+|+|| +.|..+..+.+++.||+++|||++++|+ |+|++++++++++.+... .++.++++
T Consensus 226 l~~l~~~~~~~li~DEv~~g~-~~g~~~~~~~~~~~~di~t~sK~~~~G~-~iG~~~~~~~~~~~~~~~~~~~~~~t~~~ 303 (429)
T 3k28_A 226 LREVTEQNGALLIFDEVMTGF-RVAYNCGQGYYGVTPDLTCLGKVIGGGL-PVGAYGGKAEIMRQVAPSGPIYQAGTLSG 303 (429)
T ss_dssp HHHHHHHHTCEEEEECTTTTT-TSSTTHHHHHHTCCCSEEEECGGGGTTS-CCEEEEECHHHHTTBTTTSSBCCCCTTTT
T ss_pred HHHHHHHcCCEEEEecccccc-ccCcchHHHHhCCCCceehhhhhhcCCC-CeEEEEEcHHHHhhhccCCCccccCCCCC
Confidence 999999999999999999999 8887777777889999999999999998 999999999999988653 36678999
Q ss_pred CHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCC----------CchhHH
Q 017259 231 NPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTA----------LPVSAY 300 (374)
Q Consensus 231 ~~~~~~aa~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----------~~~~~~ 300 (374)
++++++++.++++.+. +++.++++++++++++.|+++...+ +.+...++.|.++++.+.... ......
T Consensus 304 ~~~a~aaa~aal~~~~-~~~~~~~~~~~~~l~~~L~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (429)
T 3k28_A 304 NPLAMAAGYETLVQLT-PESYVEFERKAEMLEAGLRKAAEKH-GIPHHINRAGSMIGIFFTDEPVINYDAAKSSNLQFFA 381 (429)
T ss_dssp CHHHHHHHHHHHHTCC-HHHHHHHHHHHHHHHHHHHHHHHHT-TCCCEEEEETTEEEEESSSSCCCSHHHHTTSCHHHHH
T ss_pred ChHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhC-CCCEEEEeeccEEEEEEecCCcccccccccccHHHHH
Confidence 9999999999999775 6789999999999999999987666 366678889999999874321 012357
Q ss_pred HHHHHHHHCCeEeccCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhccC
Q 017259 301 DICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVLELDL 349 (374)
Q Consensus 301 ~~~~~l~~~Gi~v~~~~~~~lRi~~~~~~~~e~i~~~~~~l~~~~~~~~ 349 (374)
++++.|+++||.+++++.+.+|++ +..+++++++++++|+++++ ++
T Consensus 382 ~~~~~l~~~Gv~v~~~~~~~~r~~--~~~t~e~i~~~l~~l~~~l~-~~ 427 (429)
T 3k28_A 382 AYYREMVEQGVFLPPSQFEGLFLS--TVHSDADIEATIAAAEIAMS-KL 427 (429)
T ss_dssp HHHHHHHHTTEECCSSTTSCBCCC--TTCCHHHHHHHHHHHHHHHH-TC
T ss_pred HHHHHHHHCCeEEecCCCCCEEEE--CCCCHHHHHHHHHHHHHHHH-HH
Confidence 899999999999999877888886 78999999999999999998 65
No 27
>4e77_A Glutamate-1-semialdehyde 2,1-aminomutase; structural genomics, center for structural genomics of infec diseases, csgid, porphyrin biosynthesis; 2.00A {Yersinia pestis}
Probab=100.00 E-value=1.2e-40 Score=317.24 Aligned_cols=330 Identities=25% Similarity=0.377 Sum_probs=263.4
Q ss_pred hHHHHHHHhccccCcCCCCCcHHHHHHHHhccc-CCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCC
Q 017259 2 KALQEQAEKLTLSSRAFYNDKFPVFAERLTSMF-GYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCF 80 (374)
Q Consensus 2 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~y 80 (374)
+|+.++++++.+. .++++...+++++|++.+ +.++++|++||++|++.|+++++.+. . +++|++++++|
T Consensus 76 ~A~~~~~~~~~~~--~~~~~~~~~la~~l~~~~~~~~~v~~~~sGsea~~~al~~a~~~~---~-----~~~ii~~~~~y 145 (429)
T 4e77_A 76 QAVIEAVERGLSF--GAPTEMEVKMAQLVTDLVPTMDMVRMVNSGTEATMSAIRLARGYT---G-----RDKIIKFEGCY 145 (429)
T ss_dssp HHHHHHHTTCSCC--SSCCHHHHHHHHHHHHHSTTCSEEEEESSHHHHHHHHHHHHHHHH---C-----CCEEEEETTCC
T ss_pred HHHHHHHHhCccc--CCCCHHHHHHHHHHHhhCCCCCEEEEeCcHHHHHHHHHHHHHHhh---C-----CCEEEEEcCcc
Confidence 5677777665432 256788899999999987 68899999999999999999886431 2 38999999999
Q ss_pred CCcccccccccCCccccc------cC-CCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHH
Q 017259 81 HGRTLAAISMSCDNEAIR------GF-GPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKA 153 (374)
Q Consensus 81 hg~~~~~~~~~~~~~~~~------~~-~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~ 153 (374)
||.+.......+...... ++ ......+..++++|+++|+++++++++++++++++|+++++|.+.++++++++
T Consensus 146 hg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~~~~~g~~~~~~~~l~~ 225 (429)
T 4e77_A 146 HGHADCLLVKAGSGALTLGQPNSPGVPTDFAKHTLTCTYNDLASVRQAFEQYPQEVACIIVEPVAGNMNCIPPLPEFLPG 225 (429)
T ss_dssp CC------------------CCCTTSCGGGGTTEEEECTTCHHHHHHHHHHSTTTEEEEEECSSBCTTSCBCCCTTHHHH
T ss_pred CCCChhhhhhcCCcccccCCCCcCCCCCccCCceeecCCCCHHHHHHHHHhcCCCEEEEEECCccCCCCCcCCCHHHHHH
Confidence 999875544333211110 00 01112355677889999999999876789999999999999999999999999
Q ss_pred HHHHHHhcCCEEEEeccccCCcccccCcccccCCCCCcEEEecccccCCccchhhheeCHHHHhhcCCC---CCCCCCCC
Q 017259 154 VRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPG---EHGSTFGG 230 (374)
Q Consensus 154 l~~l~~~~~i~li~Dea~~~~~~~g~~~~~~~~~~~~d~~s~sK~~~~G~~~~G~~~~~~~~~~~~~~~---~~~~~~~~ 230 (374)
|.++|++||++||+||+|+|| +.|..+..+.++..||++|+||++++|+ |+|++++++++++.+... .+..+|++
T Consensus 226 l~~l~~~~~~lli~DEv~~g~-r~g~~~~~~~~~~~pdi~t~sK~~~~G~-~~G~~~~~~~~~~~l~~~~~~~~~~t~~~ 303 (429)
T 4e77_A 226 LRALCDEFGALLIIDEVMTGF-RVALAGAQDYYHVIPDLTCLGKIIGGGM-PVGAFGGRREVMNALAPTGPVYQAGTLSG 303 (429)
T ss_dssp HHHHHHHHTCEEEEEETTTBT-TTBTTCHHHHTTCCCSEEEEEGGGGTTS-CCEEEEECHHHHTTBTTTSSBCC--CCCC
T ss_pred HHHHHHHcCCEEEEeccccCc-ccCcchHHHhcCCCCCeeeecccccCCC-CeEEEEECHHHHHHhccCCCccccCCCCC
Confidence 999999999999999999999 8888777788899999999999999998 999999999999988753 46778899
Q ss_pred CHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCC-----------chhH
Q 017259 231 NPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTAL-----------PVSA 299 (374)
Q Consensus 231 ~~~~~~aa~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-----------~~~~ 299 (374)
++++++++.++++.++++++.++++++.+++++.|+++...+ +.....++.|.++++.++.... ....
T Consensus 304 ~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (429)
T 4e77_A 304 NPIAMAAGFACLTEISQVGVYETLTELTDSLATGLRHAAKEE-NIPLVVNHVGGMFGLFFTNADTVTCYQDVMNCDVERF 382 (429)
T ss_dssp CHHHHHHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHHHT-TCCCEEEEETTEEEEECCSSSCCCSHHHHHTSCHHHH
T ss_pred CHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhC-CCceEEEEeeeEEEEEEccCcccccccccccccHHHH
Confidence 999999999999998778899999999999999999887665 3666778889999998865310 1234
Q ss_pred HHHHHHHHHCCeEeccCCCCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 017259 300 YDICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVLE 346 (374)
Q Consensus 300 ~~~~~~l~~~Gi~v~~~~~~~lRi~~~~~~~~e~i~~~~~~l~~~~~ 346 (374)
.++++.|+++||.+++++...+|++ ...+++++++++++|+++++
T Consensus 383 ~~~~~~l~~~Gi~v~~~~~~~~~~~--~~~t~e~i~~~l~~l~~~l~ 427 (429)
T 4e77_A 383 KRFFHLMLEEGVYLAPSAFEAGFMS--LAHSNEDIQKTVNAARRCFA 427 (429)
T ss_dssp HHHHHHHHHTTEECCSSTTSCEECC--TTCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHCCeEEeecCCCCEEEe--ccCCHHHHHHHHHHHHHHHH
Confidence 7899999999999999876666654 88999999999999999987
No 28
>1s0a_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; fold type I, subclass II, homodimer; HET: LLP; 1.71A {Escherichia coli} SCOP: c.67.1.4 PDB: 1qj5_A* 1mlz_A* 1qj3_A* 1mly_A* 1s06_A* 1s08_A* 1s09_A* 1s07_A* 1mgv_A* 1dty_A*
Probab=100.00 E-value=1.8e-40 Score=316.04 Aligned_cols=334 Identities=28% Similarity=0.466 Sum_probs=265.4
Q ss_pred hHHHHHHHhccccC-cCCCCCcHHHHHHHHhccc--CCCeEEecCChHHHHHHHHHHHHHccccc---ccCCCCccEEEE
Q 017259 2 KALQEQAEKLTLSS-RAFYNDKFPVFAERLTSMF--GYDMVLPMNTGAEGVETALKLARKWGYVK---KKFSIDEAIIVS 75 (374)
Q Consensus 2 ~a~~~~~~~~~~~~-~~~~~~~~~~l~~~l~~~~--~~~~~~~~~~gs~a~~~al~~~~~~~~~~---~G~~~~~~~vi~ 75 (374)
+|+.+++++..+.. +.++.+...+++++|++++ +.+++++++||++|++.++++++.+. .. +| ++|++
T Consensus 66 ~a~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~v~~~~ggtea~~~ai~~~~~~~-~~~g~~~-----~~vi~ 139 (429)
T 1s0a_A 66 AAMKSQIDAMSHVMFGGITHAPAIELCRKLVAMTPQPLECVFLADSGSVAVEVAMKMALQYW-QAKGEAR-----QRFLT 139 (429)
T ss_dssp HHHHHHHHHCSCCCCSSEECHHHHHHHHHHHHHSCTTCCEEEEESSHHHHHHHHHHHHHHHH-HHHTCCC-----CEEEE
T ss_pred HHHHHHHHhcccccccccCCHHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHHHh-cccCCCC-----CeEEE
Confidence 56777776654332 2455677889999999988 67899999999999999999875431 11 24 89999
Q ss_pred eccCCCCcccccccccCCcc-ccccCCCCCCCceeccC-----------CCHHHHHHHHHhcCCcEEEEEEccc-cCCCC
Q 017259 76 CCGCFHGRTLAAISMSCDNE-AIRGFGPLLPGHLKVDF-----------GDITALEKIFKESGDQIAGFLFEPI-QGEAG 142 (374)
Q Consensus 76 ~~~~yhg~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-----------~d~~~le~~l~~~~~~~~~vi~~~~-~~~~g 142 (374)
++|+||+....+..+++... +...+.+...++..++. .|+++|+++++++++++++++++|+ +|++|
T Consensus 140 ~~~~yh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~vi~~p~~~n~tG 219 (429)
T 1s0a_A 140 FRNGYHGDTFGAMSVCDPDNSMHSLWKGYLPENLFAPAPQSRMDGEWDERDMVGFARLMAAHRHEIAAVIIEPIVQGAGG 219 (429)
T ss_dssp ETTCCCCSSHHHHTTSCTTTTTGGGGTTTSCCCEEECCCCSBC-CCCCGGGGHHHHHHHHHHTTTEEEEEECSSEECTTT
T ss_pred ECCCCCCCchhhhhhcCCchhhcccccCCCCCceEeCCCcccccccchHHHHHHHHHHHHhCCCCEEEEEEeecccCCCC
Confidence 99999998776655544221 22223222222222221 3789999999865567999999998 88999
Q ss_pred cccCChhHHHHHHHHHHhcCCEEEEeccccCCcccccCcccccCCCCCcEEEecccccCC-ccchhhheeCHHHHhhcCC
Q 017259 143 VIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGG-VIPVSAVLADKEVMLCIQP 221 (374)
Q Consensus 143 ~~~~~~~~l~~l~~l~~~~~i~li~Dea~~~~~~~g~~~~~~~~~~~~d~~s~sK~~~~G-~~~~G~~~~~~~~~~~~~~ 221 (374)
.+.++++++++|.++|++||++||+||+|++|++.|..+..+..+..+|++++||++++| + |+|++++++++++.+..
T Consensus 220 ~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~g~~g~~~~~~~~~~~~d~~t~sK~l~~G~~-~iG~~~~~~~~~~~l~~ 298 (429)
T 1s0a_A 220 MRMYHPEWLKRIRKICDREGILLIADEIATGFGRTGKLFACEHAEIAPDILCLGKALTGGTM-TLSATLTTREVAETISN 298 (429)
T ss_dssp CEEBCTHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEEEECGGGGTSSS-CCEEEEECHHHHHHHHT
T ss_pred cccCCHHHHHHHHHHHHHcCCEEEEeehhhCCcccchHHHhhhcCCCCCEEEecccccCCCc-cceEEEeCHHHHHHhhc
Confidence 888899999999999999999999999999998877766666677889999999999999 8 99999999998888765
Q ss_pred C-----CCCCCCCCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCc
Q 017259 222 G-----EHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALP 296 (374)
Q Consensus 222 ~-----~~~~~~~~~~~~~~aa~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 296 (374)
. ....++++++++++++.++++.+.++++.++++++++++++.|+++.. +| .+...++.|.++++.++...
T Consensus 299 ~~~~~~~~~~t~~~n~~~~~a~~aal~~~~~~~~~~~~~~~~~~l~~~L~~l~~-~~-~~~~~~~~g~~~~~~~~~~~-- 374 (429)
T 1s0a_A 299 GEAGCFMHGPTFMGNPLACAAANASLAILESGDWQQQVADIEVQLREQLAPARD-AE-MVADVRVLGAIGVVETTHPV-- 374 (429)
T ss_dssp STTSSCSCCCTTTTCHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHGGGGG-CT-TEEEEEEETTEEEEEESSCB--
T ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHhc-CC-CEEEEEEeeEEEEEEECCcc--
Confidence 3 245688899999999999999887777889999999999998877533 43 34456677889999886532
Q ss_pred hhHHHHHHHHHHCCeEeccCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhccC
Q 017259 297 VSAYDICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVLELDL 349 (374)
Q Consensus 297 ~~~~~~~~~l~~~Gi~v~~~~~~~lRi~~~~~~~~e~i~~~~~~l~~~~~~~~ 349 (374)
+..++.+.|+++||.+++. ++++||++++..+++++++++++|+++++ ++
T Consensus 375 -~~~~l~~~l~~~Gi~v~~~-~~~iRis~~~~~t~e~i~~~~~~l~~~~~-~~ 424 (429)
T 1s0a_A 375 -NMAALQKFFVEQGVWIRPF-GKLIYLMPPYIILPQQLQRLTAAVNRAVQ-DE 424 (429)
T ss_dssp -CHHHHHHHHHHTTEECCCB-TTEEEECCCTTCCHHHHHHHHHHHHHHTS-SG
T ss_pred -cHHHHHHHHHHCCCEEecc-CCEEEEECCCCCCHHHHHHHHHHHHHHHH-hh
Confidence 5778999999999999986 48999999999999999999999999887 54
No 29
>3fq8_A Glutamate-1-semialdehyde 2,1-aminomutase; drug resistance, microev0lution, integrated approach, chlorophyll biosynthesis; HET: PMP; 2.00A {Synechococcus elongatus pcc 6301} SCOP: c.67.1.4 PDB: 2hp1_A* 2hoz_A* 2hoy_A* 2hp2_A* 3fq7_A* 3usf_A* 2gsa_A* 3gsb_A* 4gsa_A* 3fqa_A* 2cfb_A*
Probab=100.00 E-value=2.5e-40 Score=314.78 Aligned_cols=329 Identities=26% Similarity=0.385 Sum_probs=272.4
Q ss_pred hHHHHHHHhccccCcCCCCCcHHHHHHHHhccc-CCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCC
Q 017259 2 KALQEQAEKLTLSSRAFYNDKFPVFAERLTSMF-GYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCF 80 (374)
Q Consensus 2 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~y 80 (374)
+|+.++++++.++. ++.+...+++++|++.+ +.+++++++||++|++.|+++++.+. | +++|++++++|
T Consensus 75 ~a~~~~~~~~~~~~--~~~~~~~~la~~l~~~~~~~~~v~~~~ggsea~~~al~~a~~~~----~----~~~vi~~~~~y 144 (427)
T 3fq8_A 75 EALKVAMEKGTSFG--APCALENVLAEMVNDAVPSIEMVRFVNSGTEACMAVLRIMRAYT----G----RDKIIKFEGCY 144 (427)
T ss_dssp HHHHHHHTTCSCCS--SCCHHHHHHHHHHHHHSTTCSEEEEESSHHHHHHHHHHHHHHHH----C----CCEEEEEETCC
T ss_pred HHHHHHHHhCCCcC--CCCHHHHHHHHHHHHhCCCCCEEEEeCCHHHHHHHHHHHHHHhh----C----CCEEEEECCCc
Confidence 56777777665432 46788899999999987 67899999999999999999886431 2 27899999999
Q ss_pred CCcccccccccCCccccccCCCCC--------CCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHH
Q 017259 81 HGRTLAAISMSCDNEAIRGFGPLL--------PGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLK 152 (374)
Q Consensus 81 hg~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~ 152 (374)
||.+..+....+.+...... |.. .++..++++|+++|+++++++++++++++++|+++++|.+.+++++++
T Consensus 145 hg~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~p~~~~~G~~~~~~~~l~ 223 (427)
T 3fq8_A 145 HGHADMFLVKAGSGVATLGL-PSSPGVPKKTTANTLTTPYNDLEAVKALFAENPGEIAGVILEPIVGNSGFIVPDAGFLE 223 (427)
T ss_dssp CCSCGGGCSSCCTHHHHHTC-CSCSSSCHHHHTTEEEEETTCHHHHHHHHHHSTTTEEEEEECSSBCTTSCBCCCTTHHH
T ss_pred CCCCHHHHHhcCCcccccCC-CCCCCCCCcccCceeecCCCCHHHHHHHHHhCCCCEEEEEEcCCcCCCCCcCCCHHHHH
Confidence 99988777666544332111 111 135667888999999999987678999999999999999999999999
Q ss_pred HHHHHHHhcCCEEEEeccccCCcccccCcccccCCCCCcEEEecccccCCccchhhheeCHHHHhhcCCC---CCCCCCC
Q 017259 153 AVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPG---EHGSTFG 229 (374)
Q Consensus 153 ~l~~l~~~~~i~li~Dea~~~~~~~g~~~~~~~~~~~~d~~s~sK~~~~G~~~~G~~~~~~~~~~~~~~~---~~~~~~~ 229 (374)
+|.++|++||++||+||+|+|| +.|..+..+.++..||+.|+||++++|+ |+|++++++++++.+... .+..+++
T Consensus 224 ~l~~l~~~~~~~li~DEv~~g~-~~g~~~~~~~~~~~~di~t~sK~~~~G~-~~G~~~~~~~~~~~~~~~~~~~~~~t~~ 301 (427)
T 3fq8_A 224 GLREITLEHDALLVFDEVITGF-RIAYGGVQEKFGVTPDLTTLGKIIGGGL-PVGAYGGKREIMQLVAPAGPMYQAGTLS 301 (427)
T ss_dssp HHHHHHHHTTCEEEEECTTTBT-TTBTTHHHHHTTCCCSEEEECGGGGTTS-SCEEEEECHHHHTTBTTTSSBCCCCTTT
T ss_pred HHHHHHHHcCCEEEEecccccc-ccCcchhhHhcCCCCChhhhhhhhhCCc-ceEEEEEcHHHHHhhccCCCccccCCCC
Confidence 9999999999999999999999 8887777778889999999999999998 999999999999988753 3677889
Q ss_pred CCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCC----------chhH
Q 017259 230 GNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTAL----------PVSA 299 (374)
Q Consensus 230 ~~~~~~~aa~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----------~~~~ 299 (374)
+++++++++.++++.+.++++.++++++.+++++.|+++...+ +.....++.|.++++.+..... ....
T Consensus 302 ~~~~~~aa~~aal~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (427)
T 3fq8_A 302 GNPLAMTAGIKTLELLRQPGTYEYLDQITKRLSDGLLAIAQET-GHAACGGQVSGMFGFFFTEGPVHNYEDAKKSDLQKF 380 (427)
T ss_dssp TCHHHHHHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHHHT-TCCCEEEEETTEEEEESSSCCCCSHHHHTTSCHHHH
T ss_pred cCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhC-CCCeEEEEeeeEEEEEEecCccccccccccccHHHH
Confidence 9999999999999988778899999999999999999987665 3555677889999998854321 1125
Q ss_pred HHHHHHHHHCCeEeccCCCCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 017259 300 YDICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVLE 346 (374)
Q Consensus 300 ~~~~~~l~~~Gi~v~~~~~~~lRi~~~~~~~~e~i~~~~~~l~~~~~ 346 (374)
.++++.|+++||.+++.+.. |+.++...+++++++++++|+++++
T Consensus 381 ~~l~~~l~~~Gi~v~~~~~~--r~~~~~~~t~e~i~~~l~~l~~~l~ 425 (427)
T 3fq8_A 381 SRFHRGMLEQGIYLAPSQFE--AGFTSLAHTEEDIDATLAAARTVMS 425 (427)
T ss_dssp HHHHHHHHHTTEECCSSTTS--CEECCTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCcEEecCCCC--CEEeeCcCCHHHHHHHHHHHHHHHH
Confidence 68999999999999998655 5555688999999999999999987
No 30
>2ord_A Acoat, acetylornithine aminotransferase; TM1785, acetylornithine aminotransferase (EC 2.6.1.11) (ACOA structural genomics; HET: MSE PLP; 1.40A {Thermotoga maritima MSB8} PDB: 2e54_A*
Probab=100.00 E-value=3.7e-40 Score=310.62 Aligned_cols=333 Identities=33% Similarity=0.608 Sum_probs=270.9
Q ss_pred hHHHHHHHhccccCcCCCCCcHHHHHHHHhcccCCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCC
Q 017259 2 KALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFH 81 (374)
Q Consensus 2 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yh 81 (374)
+|+.+++++..+....++.+...+++++|++++|.+++++++||++|++.++++++.+. .. | .+++++|++++++||
T Consensus 63 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~v~~~~gg~~a~~~al~~~~~~~-~~-~-~~~~~~vi~~~~~yh 139 (397)
T 2ord_A 63 EAIKDQAEKLIHCSNLFWNRPQMELAELLSKNTFGGKVFFANTGTEANEAAIKIARKYG-KK-K-SEKKYRILSAHNSFH 139 (397)
T ss_dssp HHHHHHHHHCSCCCTTSEEHHHHHHHHHHHHTTTSCEEEEESSHHHHHHHHHHHHHHHH-HH-H-CTTCCEEEEEBTCCC
T ss_pred HHHHHHHHhcccCccccCCHHHHHHHHHHHHhcCCCeEEEeCCHHHHHHHHHHHHHHHh-hc-C-CCCCceEEEEcCCcC
Confidence 56777776655543345567889999999999999999999999999999999885321 00 0 012378999999999
Q ss_pred CcccccccccCCccccccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhc
Q 017259 82 GRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKY 161 (374)
Q Consensus 82 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~ 161 (374)
+....+....+...+..++.|...++..++++|+++|+++++ ++++++++++++|++|.+.++.+.+++|.++|++|
T Consensus 140 ~~~~~~~~~~g~~~~~~~~~p~~~~~~~~~~~d~~~l~~~l~---~~~~~v~~~~~~nptG~~~~~~~~l~~l~~l~~~~ 216 (397)
T 2ord_A 140 GRTLGSLTATGQPKYQKPFEPLVPGFEYFEFNNVEDLRRKMS---EDVCAVFLEPIQGESGIVPATKEFLEEARKLCDEY 216 (397)
T ss_dssp CSSHHHHHHSBCHHHHGGGCSCCTTEEEECTTCHHHHHHHCC---TTEEEEEECSEECTTTCEECCHHHHHHHHHHHHHH
T ss_pred CCchhhhhccCChhhccccCCCCCCeeEecCCCHHHHHHHhh---cCeEEEEEecccCCCCcccCCHHHHHHHHHHHHHc
Confidence 987755555444434445556666677788889999999887 57999999999999998566899999999999999
Q ss_pred CCEEEEeccccCCcccccCcccccCCCCCcEEEecccccCCccchhhheeCHHHHhhcCCCCCCCCCCCCHHHHHHHHHH
Q 017259 162 NILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIAS 241 (374)
Q Consensus 162 ~i~li~Dea~~~~~~~g~~~~~~~~~~~~d~~s~sK~~~~G~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~a 241 (374)
|++||+||+|+++++.|..+....++..+|++||||.+++|+ |+|++++++++. .+.......+++.++++++++.++
T Consensus 217 ~~~li~De~~~~~~~~g~~~~~~~~~~~~d~~s~sK~~~~G~-r~G~~~~~~~~~-~l~~~~~~~~~~~~~~~~~a~~~~ 294 (397)
T 2ord_A 217 DALLVFDEVQCGMGRTGKLFAYQKYGVVPDVLTTAKGLGGGV-PIGAVIVNERAN-VLEPGDHGTTFGGNPLACRAGVTV 294 (397)
T ss_dssp TCEEEEECTTTTTTTTSSSSHHHHHTCCCSEEEECGGGGTTS-CCEEEEECSTTC-CCCTTSSCCSSTTCHHHHHHHHHH
T ss_pred CCEEEEEecccCCccCccchhhhhhCCCCCeeeeccccCCCc-CeEEEEEchHhc-ccCCCCcCCCCCCCHHHHHHHHHH
Confidence 999999999998877776555455566789999999999999 999999988877 766545667888999999999999
Q ss_pred HHHHhhhcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCchhHHHHHHHHHHCCeEeccCCCCEE
Q 017259 242 LDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTHDTIV 321 (374)
Q Consensus 242 l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~~~l 321 (374)
++.+.++++.++++++++++.+.|+++...++ .+...++.|.++++.++... +..++.+.|.++||.+.+++.+++
T Consensus 295 l~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~-~~~~~~~~g~~~~~~~~~~~---~~~~l~~~l~~~gi~v~~~~~~~i 370 (397)
T 2ord_A 295 IKELTKEGFLEEVEEKGNYLMKKLQEMKEEYD-VVADVRGMGLMIGIQFREEV---SNREVATKCFENKLLVVPAGNNTI 370 (397)
T ss_dssp HHHHTSTTHHHHHHHHHHHHHHHHHHHHHHCT-TEEEEEEETTEEEEEECTTS---CHHHHHHHHHHTTEECEEETTTEE
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHHHHHhCC-ceEEEEEEeEEEEEEECChH---HHHHHHHHHHHCCCEEccCCCCEE
Confidence 99887677899999999999999988753443 44445677889998886533 578899999999999999878899
Q ss_pred EEecCCCCCHHHHHHHHHHHHHHHh
Q 017259 322 RLTPPLSISSNELQEGSKALHDVLE 346 (374)
Q Consensus 322 Ri~~~~~~~~e~i~~~~~~l~~~~~ 346 (374)
|+++++..+++++++++++|+++++
T Consensus 371 Ris~~~~~~~e~i~~~~~~l~~~l~ 395 (397)
T 2ord_A 371 RFLPPLTVEYGEIDLAVETLKKVLQ 395 (397)
T ss_dssp EECCCTTCCHHHHHHHHHHHHHHHH
T ss_pred EEECCcCCCHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999887
No 31
>2eo5_A 419AA long hypothetical aminotransferase; PLP enzyme, structural genomics, NPPSFA, N project on protein structural and functional analyses; HET: PLP; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=2.5e-40 Score=313.94 Aligned_cols=323 Identities=34% Similarity=0.604 Sum_probs=254.4
Q ss_pred hHHHHHHHhccccC-cCCCCCcHHHHHHHHhcccC---CCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEec
Q 017259 2 KALQEQAEKLTLSS-RAFYNDKFPVFAERLTSMFG---YDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCC 77 (374)
Q Consensus 2 ~a~~~~~~~~~~~~-~~~~~~~~~~l~~~l~~~~~---~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~ 77 (374)
+|+.+++++..+++ +.++.+...+++++|+++++ .+++++++||++|++.++++++.+ .| ++|++++
T Consensus 66 ~a~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~gg~ea~~~ai~~~~~~----~~-----~~vi~~~ 136 (419)
T 2eo5_A 66 KIGIEQMQKLAHAAANDFYNIPQLELAKKLVTYSPGNFQKKVFFSNSGTEAIEASIKVVKNT----GR-----KYIIAFL 136 (419)
T ss_dssp HHHHHHHTTSCCCSCSCSCCHHHHHHHHHHHHHSSCSSCEEEEEESSHHHHHHHHHHHHHTT----SC-----CEEEEET
T ss_pred HHHHHHHhhCccccccccCCHHHHHHHHHHHHhCCCCcCCEEEEeCchHHHHHHHHHHHHHh----hC-----CcEEEEC
Confidence 56677776654433 34667778999999999886 458999999999999999988632 25 8999999
Q ss_pred cCCCCcccccccccCCc-cccccCCCCCCCceeccCC---------------------CHHHHH-HHHHhcC--CcEEEE
Q 017259 78 GCFHGRTLAAISMSCDN-EAIRGFGPLLPGHLKVDFG---------------------DITALE-KIFKESG--DQIAGF 132 (374)
Q Consensus 78 ~~yhg~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~---------------------d~~~le-~~l~~~~--~~~~~v 132 (374)
|+||+.+..+..+++.. .+..++.+...++..++++ |+++|+ ++++++. ++++++
T Consensus 137 p~yh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~v 216 (419)
T 2eo5_A 137 GGFHGRTFGSISLTASKAVQRSIVGPFMPGVIHVPYPNPYRNPWHINGYENPSELVNRVIEFIEDYIFVNLVPPEEVAGI 216 (419)
T ss_dssp TCCCCSSHHHHHHCCSCGGGGCSSCCCCTTEEEECCCCSSSCTTCCCTTTCHHHHHHHHHHHHHHTHHHHTCCGGGEEEE
T ss_pred CCcCCCCHhhHhhcCCccccccccCCCCCCCEEECCCccccccccccccccchhhHHHHHHHHHHHHHhhccCCCCEEEE
Confidence 99999988777666543 3444444444455555543 257888 8887531 478999
Q ss_pred EEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEeccccCCcccccCcccccCCCCCcEEEecccccCC-ccchhhhee
Q 017259 133 LFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGG-VIPVSAVLA 211 (374)
Q Consensus 133 i~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~~~~~~g~~~~~~~~~~~~d~~s~sK~~~~G-~~~~G~~~~ 211 (374)
+++|++|++|.+.++++++++|.++|++||++||+||+|++|++.|..+.....+..+|++||||++++| + |+||+++
T Consensus 217 i~~p~~~~tG~~~~~~~~l~~l~~l~~~~~~~li~DE~~~~~g~~g~~~~~~~~~~~~d~~t~sK~~~~G~~-riG~~~~ 295 (419)
T 2eo5_A 217 FFEPIQGEGGYVIPPKNFFAELQKLAKKYGILLVDDEVQMGLGRTGKLFAIENFNTVPDVITLAKALGGGIM-PIGATIF 295 (419)
T ss_dssp EECSSBTTTTSBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEEEECGGGGTTTS-CCEEEEE
T ss_pred EEeCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCccCcchhhHHhcCCCCCEEEecccccCCcc-ceEEEEE
Confidence 9999888889888899999999999999999999999999998888766666678889999999999999 8 9999999
Q ss_pred CHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEec
Q 017259 212 DKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFD 291 (374)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~aa~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~ 291 (374)
+++++ .+ ...+..+++.++++++++.++++.+.+ +.++++++++++.+.|+++ +...++.|+++++.+.
T Consensus 296 ~~~~~-~~-~~~~~~t~~~n~~~~~aa~aal~~~~~--~~~~~~~~~~~l~~~L~~~-------~~~~~~~g~~~~i~~~ 364 (419)
T 2eo5_A 296 RKDLD-FK-PGMHSNTFGGNALACAIGSKVIDIVKD--LLPHVNEIGKIFAEELQGL-------ADDVRGIGLAWGLEYN 364 (419)
T ss_dssp EGGGC-CC-------CCCCCHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHTTS-------SSEEEEETTEEEEECS
T ss_pred chHhh-cC-CcccCCCCCCCHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHh-------hhheEeeeEEEEEEEe
Confidence 98887 66 445667899999999999999987643 7788888888888777553 2235678899988873
Q ss_pred cCCCchhHHHHHHHHHHCCeEeccCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhccC
Q 017259 292 KTALPVSAYDICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVLELDL 349 (374)
Q Consensus 292 ~~~~~~~~~~~~~~l~~~Gi~v~~~~~~~lRi~~~~~~~~e~i~~~~~~l~~~~~~~~ 349 (374)
... .... +.+.|+++||.+++++.+++||++++..+++++++++++|+++++ ++
T Consensus 365 ~~~--~~~~-~~~~l~~~Gv~v~~~~~~~lRis~~~~~t~e~i~~~l~~l~~~l~-~~ 418 (419)
T 2eo5_A 365 EKK--VRDR-IIGESFKRGLLLLPAGRSAIRVIPPLVISEEEAKQGLDILKKVIK-VV 418 (419)
T ss_dssp CHH--HHHH-HHHHHHHTTEECEEETTTEEEECCCTTCCHHHHHHHHHHHHHHHH-HC
T ss_pred cCc--cHHH-HHHHHHHCCCEEecCCCCEEEEECCCCCCHHHHHHHHHHHHHHHH-hc
Confidence 210 1355 999999999999998778999999999999999999999999987 53
No 32
>2epj_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.70A {Aeropyrum pernix} PDB: 2zsl_A* 2zsm_A*
Probab=100.00 E-value=1.7e-39 Score=309.69 Aligned_cols=332 Identities=25% Similarity=0.385 Sum_probs=263.8
Q ss_pred hHHHHHHHhccccCcCCCCCcHHHHHHHHhccc-CCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCC
Q 017259 2 KALQEQAEKLTLSSRAFYNDKFPVFAERLTSMF-GYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCF 80 (374)
Q Consensus 2 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~y 80 (374)
+|+.++++++.+ ..++.+...+++++|++++ +.+++++++||++|++.++++++.+. ++ ++|++++++|
T Consensus 79 ~a~~~~~~~~~~--~~~~~~~~~~l~~~la~~~~~~~~v~~~~sgseA~~~al~~ar~~~---~~-----~~vi~~~~~y 148 (434)
T 2epj_A 79 EAVEEALARGWL--YGAPGEAEVLLAEKILGYVKRGGMIRFVNSGTEATMTAIRLARGYT---GR-----DLILKFDGCY 148 (434)
T ss_dssp HHHHHHHHTCSC--CSSCCHHHHHHHHHHHHHHCTTCEEEEESSHHHHHHHHHHHHHHHH---CC-----CEEEEEETCC
T ss_pred HHHHHHHHhCCC--CCCCCHHHHHHHHHHHHhCCCCCEEEEeCCHHHHHHHHHHHHHHhh---CC-----CeEEEEcCCc
Confidence 567777776532 2356778899999999988 88999999999999999999865321 23 7899999999
Q ss_pred CCcccccccccCCccccc--cC-CCC----CCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHH
Q 017259 81 HGRTLAAISMSCDNEAIR--GF-GPL----LPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKA 153 (374)
Q Consensus 81 hg~~~~~~~~~~~~~~~~--~~-~~~----~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~ 153 (374)
||.+..+....+...... .. ... ..++..++++|+++|+++++++++++++++++|+++++|.+.++++++++
T Consensus 149 hg~~~~~~~~~~~~~~~~~~p~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~ 228 (434)
T 2epj_A 149 HGSHDAVLVAAGSAAAHYGVPTSAGVPEAVARLTLVTPYNDVEALERVFAEYGDRIAGVIVEPVIANAGVIPPRREFLAA 228 (434)
T ss_dssp CCSSGGGSEECC------CEESSTTCCHHHHTTEEEEETTCHHHHHHHHHHHGGGEEEEEECSSBCSSSCBCCCHHHHHH
T ss_pred CCCCHHHHHhcCCCccccCCCCCCCCCCcccCceEecCCCCHHHHHHHHHhCCCCEEEEEEeCCcCCCCccCCCHHHHHH
Confidence 998876655443211000 00 000 02355667789999999998654579999999999889988989999999
Q ss_pred HHHHHHhcCCEEEEeccccCCcccccCcccccCCCCCcEEEecccccCCccchhhheeCHHHHhhcCCC---CCCCCCCC
Q 017259 154 VRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPG---EHGSTFGG 230 (374)
Q Consensus 154 l~~l~~~~~i~li~Dea~~~~~~~g~~~~~~~~~~~~d~~s~sK~~~~G~~~~G~~~~~~~~~~~~~~~---~~~~~~~~ 230 (374)
|.++|++||++||+||+|+|+ +.|..+..+.+++.||++||||++++|+ |+|++++++++++.+... .+..+|++
T Consensus 229 l~~l~~~~g~~lI~DEv~~g~-~~g~~~~~~~~~~~~di~s~sK~l~~G~-~~G~v~~~~~~~~~l~~~~~~~~~~t~~~ 306 (434)
T 2epj_A 229 LQRLSRESGALLILDEVVTGF-RLGLEGAQGYFNIEGDIIVLGKIIGGGF-PVGAVAGSREVMSLLTPQGKVFNAGTFNA 306 (434)
T ss_dssp HHHHHHHHTCEEEEEETTTTT-TSSTTHHHHHHTCCCSEEEEEGGGGTTS-SCEEEEECHHHHTTBTTTSSBCCCCTTTT
T ss_pred HHHHHHHcCCEEEEEcchhce-eCCcchhhHHhCCCCCeeeecchhcCCc-ceeeeeecHHHHHhhccCCCcccCCCCCc
Confidence 999999999999999999998 6676666667788899999999999998 999999999999888762 35678899
Q ss_pred CHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCC----------CchhHH
Q 017259 231 NPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTA----------LPVSAY 300 (374)
Q Consensus 231 ~~~~~~aa~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----------~~~~~~ 300 (374)
++++++++.++++.+.++++.++++++++++++.|+++...+ +.....++.|.++++.++... ......
T Consensus 307 ~~~~~aa~~a~l~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~-~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~ 385 (434)
T 2epj_A 307 HPITMAAGLATLKALEEEPVYSVSREAAKALEEAASEVLDRT-GLPYTINRVESMMQLFIGVEEVSNAAQARKADKKFYV 385 (434)
T ss_dssp CHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHH-TCCEEEEEETTEEEEEETCSCCSSHHHHTTSCHHHHH
T ss_pred CHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhC-CCcEEEEEeeeEEEEEEeCCCcccchhccccCHHHHH
Confidence 999999999999988777899999999999999998875443 354456788999999886411 012467
Q ss_pred HHHHHHHHCCeEeccCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhccC
Q 017259 301 DICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVLELDL 349 (374)
Q Consensus 301 ~~~~~l~~~Gi~v~~~~~~~lRi~~~~~~~~e~i~~~~~~l~~~~~~~~ 349 (374)
++.+.|+++||.+.++....+|+ ++..+++++++++++|+++++ ++
T Consensus 386 ~~~~~l~~~Gv~v~~~~~~~~~~--~~~~t~e~i~~~l~~l~~~l~-~~ 431 (434)
T 2epj_A 386 KLHEEMLRRGVFIAPSNLEAVFT--GLPHQGEALEIAVEGLRSSLK-TV 431 (434)
T ss_dssp HHHHHHHHTTEECCSSTTSCEEC--CTTCSHHHHHHHHHHHHHHHH-HH
T ss_pred HHHHHHHHCCeEEeccCCCcEEE--eccCCHHHHHHHHHHHHHHHH-HH
Confidence 89999999999999986555554 478999999999999999987 54
No 33
>1sff_A 4-aminobutyrate aminotransferase; enzyme complexes; HET: IK2; 1.90A {Escherichia coli} SCOP: c.67.1.4 PDB: 1sf2_A* 1szk_A* 1szu_A* 1szs_A*
Probab=100.00 E-value=1e-38 Score=303.42 Aligned_cols=337 Identities=28% Similarity=0.546 Sum_probs=264.5
Q ss_pred hHHHHHHHhccccC-cCCCCCcHHHHHHHHhccc-C-C-CeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEec
Q 017259 2 KALQEQAEKLTLSS-RAFYNDKFPVFAERLTSMF-G-Y-DMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCC 77 (374)
Q Consensus 2 ~a~~~~~~~~~~~~-~~~~~~~~~~l~~~l~~~~-~-~-~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~ 77 (374)
+|+.+++++..+.. .+++.+...++++.|++++ + . +++++++||++|++.++++++.. ..+ ++|++.+
T Consensus 64 ~a~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~g~~~a~~~~~~~a~~~--~~~------~~vi~~~ 135 (426)
T 1sff_A 64 AAVEAQLKKLSHTCFQVLAYEPYLELCEIMNQKVPGDFAKKTLLVTTGSEAVENAVKIARAA--TKR------SGTIAFS 135 (426)
T ss_dssp HHHHHHTTTCSCCCTTTEECHHHHHHHHHHHHHSSCSSCEEEEEESSHHHHHHHHHHHHHHH--HTC------CEEEEET
T ss_pred HHHHHHHHhCCCccccccCCHHHHHHHHHHHHhCCcccccEEEEeCchHHHHHHHHHHHHHh--hCC------CeEEEEC
Confidence 45555554443322 3455778889999999988 5 4 78999999999999999954322 111 5799999
Q ss_pred cCCCCcccccccccCC-ccccccCCCCCCCceeccCC----------CHHHHHHHHHh--cCCcEEEEEEccccCCCCcc
Q 017259 78 GCFHGRTLAAISMSCD-NEAIRGFGPLLPGHLKVDFG----------DITALEKIFKE--SGDQIAGFLFEPIQGEAGVI 144 (374)
Q Consensus 78 ~~yhg~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~----------d~~~le~~l~~--~~~~~~~vi~~~~~~~~g~~ 144 (374)
|+||+....+..+.+. ..++..+.+...++..++++ |+++|++++++ +++++++++++|+++++|.+
T Consensus 136 p~y~~~~~~~~~~~g~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~v~~~p~~~ntG~~ 215 (426)
T 1sff_A 136 GAYHGRTHYTLALTGKVNPYSAGMGLMPGHVYRALYPCPLHGISEDDAIASIHRIFKNDAAPEDIAAIVIEPVQGEGGFY 215 (426)
T ss_dssp TCCCCSSHHHHHHSSCCTTTTTTSCCCCSSEEEECCCBGGGTBCHHHHHHHHHHHHHHTCCGGGEEEEEECSBCTTTTSC
T ss_pred CCcCCCchHhhhhcCCccccccccCCCCCCcEEeCCCccccccchHHHHHHHHHHHHhccCCCceEEEEEecccCCCCcc
Confidence 9999988765554432 12223333333334444442 57889988874 12478999999987778878
Q ss_pred cCChhHHHHHHHHHHhcCCEEEEeccccCCcccccCcccccCCCCCcEEEecccccCCccchhhheeCHHHHhhcCCCCC
Q 017259 145 IPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEH 224 (374)
Q Consensus 145 ~~~~~~l~~l~~l~~~~~i~li~Dea~~~~~~~g~~~~~~~~~~~~d~~s~sK~~~~G~~~~G~~~~~~~~~~~~~~~~~ 224 (374)
.++++++++|.++|++||++||+||+|++|++.|..+..+..+..+|+.||||++++|+ |+||+++++++++.+.....
T Consensus 216 ~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~di~s~sK~~~~Gl-riG~~~~~~~~~~~l~~~~~ 294 (426)
T 1sff_A 216 ASSPAFMQRLRALCDEHGIMLIADEVQSGAGRTGTLFAMEQMGVAPDLTTFAKSIAGGF-PLAGVTGRAEVMDAVAPGGL 294 (426)
T ss_dssp BCCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGTTSCCSEEEECGGGGTSS-CCEEEEEEHHHHTTSCTTSB
T ss_pred cCCHHHHHHHHHHHHHcCCEEEEechhhccCcccchhhhhhcCCCCCEEEEcccccCCC-ceEEEEEcHHHHhhhccCCc
Confidence 88999999999999999999999999999988777666666777899999999999998 99999999999888876556
Q ss_pred CCCCCCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccC-----CCchhH
Q 017259 225 GSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKT-----ALPVSA 299 (374)
Q Consensus 225 ~~~~~~~~~~~~aa~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~-----~~~~~~ 299 (374)
..+++.++++++++.++++.+.++++.+++++++++++++|+.+...++ .+...++.|.++|+.++.. ..+.+.
T Consensus 295 ~~~~~~~~~~~~a~~aal~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 373 (426)
T 1sff_A 295 GGTYAGNPIACVAALEVLKVFEQENLLQKANDLGQKLKDGLLAIAEKHP-EIGDVRGLGAMIAIELFEDGDHNKPDAKLT 373 (426)
T ss_dssp CCSSSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTCT-TEEEEEEETTEEEEEEBGGGCTTSBCHHHH
T ss_pred CcCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCC-CeEEEEEEEEEEEEEEecCccccCCChHHH
Confidence 7788999999999999999887778899999999999999988765553 4555567799999988431 001256
Q ss_pred HHHHHHHHHCCeEeccCC--CCEEEEecCCCCCHHHHHHHHHHHHHHHhccC
Q 017259 300 YDICLKMKERGILAKPTH--DTIVRLTPPLSISSNELQEGSKALHDVLELDL 349 (374)
Q Consensus 300 ~~~~~~l~~~Gi~v~~~~--~~~lRi~~~~~~~~e~i~~~~~~l~~~~~~~~ 349 (374)
.++.+.|.++||.+.++. .+++||++++..+++++++++++|+++++ ++
T Consensus 374 ~~l~~~l~~~gi~v~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~l~-~~ 424 (426)
T 1sff_A 374 AEIVARARDKGLILLSCGPYYNVLRILVPLTIEDAQIRQGLEIISQCFD-EA 424 (426)
T ss_dssp HHHHHHHHHTTEECEEESTTSCEEEECCCTTCCHHHHHHHHHHHHHHHH-HH
T ss_pred HHHHHHHHHCCcEEecCCCCCCEEEEECCccCCHHHHHHHHHHHHHHHH-HH
Confidence 789999999999999875 68999999989999999999999999987 54
No 34
>1ohv_A 4-aminobutyrate aminotransferase; PLP-dependent enzyme, 4- AMIN acid, antiepileptic drug target; HET: PLP; 2.3A {Sus scrofa} SCOP: c.67.1.4 PDB: 1ohw_A* 1ohy_A*
Probab=100.00 E-value=7.6e-39 Score=307.74 Aligned_cols=318 Identities=22% Similarity=0.372 Sum_probs=249.0
Q ss_pred CCcHHHHHHHHhccc--CCCeEEecCChHHHHHHHHHHHHHcccc-cccC---------------CCC--ccEEEEeccC
Q 017259 20 NDKFPVFAERLTSMF--GYDMVLPMNTGAEGVETALKLARKWGYV-KKKF---------------SID--EAIIVSCCGC 79 (374)
Q Consensus 20 ~~~~~~l~~~l~~~~--~~~~~~~~~~gs~a~~~al~~~~~~~~~-~~G~---------------~~~--~~~vi~~~~~ 79 (374)
.++.+.++++|++++ +.++++|++||++|++.|+++++.++.. .+|. .++ +++||+++++
T Consensus 109 ~~l~~~la~~l~~~~~~~~~~v~f~~sGseA~~~Aik~a~~~~~~~~~~~~~~t~~~~~~~~~~~~~g~~r~~ii~~~~~ 188 (472)
T 1ohv_A 109 ENFVEKLRESLLSVAPKGMSQLITMACGSCSNENAFKTIFMWYRSKERGQSAFSKEELETCMINQAPGCPDYSILSFMGA 188 (472)
T ss_dssp TTHHHHHHHTGGGGCCTTCCEEEEESSHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHTTCTTTSCCCEEEEETTC
T ss_pred HHHHHHHHHHHHHhCCCCcCEEEEeCCchhHHHHHHHHHHHHhhhhccCcccccccccccccccccccCCCCeEEEECCC
Confidence 445566777677766 6789999999999999999999754210 0110 123 4899999999
Q ss_pred CCCcccccccccCCccccccCCCCCCCcee-------cc------CC------CHHHHHHHHHhcCC---cEEEEEEccc
Q 017259 80 FHGRTLAAISMSCDNEAIRGFGPLLPGHLK-------VD------FG------DITALEKIFKESGD---QIAGFLFEPI 137 (374)
Q Consensus 80 yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~------~~------d~~~le~~l~~~~~---~~~~vi~~~~ 137 (374)
|||.+..+..+++...++....+.. ++.. .+ ++ |+++|+++|+++.+ ++++|+++|+
T Consensus 189 yHg~~~~~~~~~g~~~~~~~~~~~~-~~~~~~~p~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~vive~v 267 (472)
T 1ohv_A 189 FHGRTMGCLATTHSKAIHKIDIPSF-DWPIAPFPRLKYPLEEFVKENQQEEARCLEEVEDLIVKYRKKKKTVAGIIVEPI 267 (472)
T ss_dssp CCCSSHHHHHHCCSCHHHHTTSCCC-CCCEECCCCCCSSGGGCHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECSS
T ss_pred cccccHHHHhcCCCccccccCCCCC-CCcccCCCcccCccccccccchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEcCC
Confidence 9999998887776543321111110 0000 01 11 57889999885322 7999999999
Q ss_pred cCCCCcccCChhHHHHHHHHHHhcCCEEEEeccccCCcccccCcccccCCCC--CcEEEeccc-ccCCccchhhheeCHH
Q 017259 138 QGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVR--PDMVILGKA-LGGGVIPVSAVLADKE 214 (374)
Q Consensus 138 ~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~~~~~~g~~~~~~~~~~~--~d~~s~sK~-~~~G~~~~G~~~~~~~ 214 (374)
++++|.+.++++++++|.++|++||++||+||+|+|+++.|..++...+++. ||+++|||+ ++||+ ++ +++
T Consensus 268 ~~~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~~g~g~~g~~~~~~~~gv~~~~Di~t~sK~~l~GG~-----~~-~~~ 341 (472)
T 1ohv_A 268 QSEGGDNHASDDFFRKLRDISRKHGCAFLVDEVQTGGGSTGKFWAHEHWGLDDPADVMTFSKKMMTGGF-----FH-KEE 341 (472)
T ss_dssp BCTTTCBCCCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSGGGGGCCSSCCSEEEECGGGSSEEE-----EE-CGG
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCCEEEEeCcccCCCCCCCchhccccCCCCCCCEEEEccccccCCc-----cC-chh
Confidence 9999999999999999999999999999999999999988877777777776 999999999 77776 23 555
Q ss_pred HHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCC
Q 017259 215 VMLCIQPGEHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTA 294 (374)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~aa~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 294 (374)
+ ..+....+..|+++++++++++.++++.+.++++.++++++++++++.|+++...+|..+...++.|.++++++++..
T Consensus 342 ~-~~~~~~~~~~T~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~v~~~~~~g~~~~~~~~~~~ 420 (472)
T 1ohv_A 342 F-RPNAPYRIFNTWLGDPSKNLLLAEVINIIKREDLLSNAAHAGKVLLTGLLDLQARYPQFISRVRGRGTFCSFDTPDES 420 (472)
T ss_dssp G-SCSSSSSSCCSSSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCTTTCEEEEEETTEEEEECSSHH
T ss_pred h-cccccccccCccCccHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHhhCCCcEEeecCCceEEEEEeCChh
Confidence 4 334455577889999999999999999987778999999999999999998765554335567788999998775421
Q ss_pred CchhHHHHHHHHHHCCeEeccCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhccC
Q 017259 295 LPVSAYDICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVLELDL 349 (374)
Q Consensus 295 ~~~~~~~~~~~l~~~Gi~v~~~~~~~lRi~~~~~~~~e~i~~~~~~l~~~~~~~~ 349 (374)
...++++.|+++||.+.+.+.+++|++|++.++++++++++++|+++++ ++
T Consensus 421 ---~~~~~~~~l~~~Gv~~~~~g~~~iRi~~~~~~t~e~i~~~~~~l~~~l~-~~ 471 (472)
T 1ohv_A 421 ---IRNKLISIARNKGVMLGGCGDKSIRFRPTLVFRDHHAHLFLNIFSDILA-DF 471 (472)
T ss_dssp ---HHHHHHHHHHHTTEECEEETTTEEEECCCTTCCHHHHHHHHHHHHHHHH-TC
T ss_pred ---HHHHHHHHHHHCCeEEecCCCCEEEEECCCCCCHHHHHHHHHHHHHHHH-hc
Confidence 4678999999999999987678999999999999999999999999987 54
No 35
>2e7u_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.90A {Thermus thermophilus}
Probab=100.00 E-value=1.7e-38 Score=301.92 Aligned_cols=328 Identities=26% Similarity=0.404 Sum_probs=260.0
Q ss_pred hHHHHHHHhccccCcCCCCCcHHHHHHHHhccc-CCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCC
Q 017259 2 KALQEQAEKLTLSSRAFYNDKFPVFAERLTSMF-GYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCF 80 (374)
Q Consensus 2 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~y 80 (374)
+|+.++++++.++ .++.+...+++++|++++ +.+++++++||++|++.++++++.+. ++ ++|++++|+|
T Consensus 75 ~a~~~~~~~~~~~--~~~~~~~~~l~~~l~~~~~~~~~v~~~~~g~ea~~~al~~ar~~~---~~-----~~vi~~~~~y 144 (424)
T 2e7u_A 75 ARVRETLERGLTF--GAPSPLEVALAKKVKRAYPFVDLVRFVNSGTEATMSALRLARGYT---GR-----PYIVKFRGNY 144 (424)
T ss_dssp HHHHHHHHTCSCC--SSCCHHHHHHHHHHHHHCTTCCEEEEESSHHHHHHHHHHHHHHHH---CC-----CEEEEETTCC
T ss_pred HHHHHHHHhCCCC--CCCCHHHHHHHHHHHHhCCCCCEEEEeCCHHHHHHHHHHHHHHhh---CC-----CEEEEECCCc
Confidence 5677777765332 256778899999999988 78999999999999999999865331 22 7899999999
Q ss_pred CCcccccccccCCcccc--ccCC-CC----CCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHH
Q 017259 81 HGRTLAAISMSCDNEAI--RGFG-PL----LPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKA 153 (374)
Q Consensus 81 hg~~~~~~~~~~~~~~~--~~~~-~~----~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~ 153 (374)
||.+..+....+..... .... .. ..++..++++|+++|+++++++++++++++++|+++++|.+.++++++++
T Consensus 145 hg~~~~~~~~~~~~~~~~~~p~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~ 224 (424)
T 2e7u_A 145 HGHADGLLVEAGSGALTLGVPSSAGVPEEYAKLTLVLEYNDPEGLREVLKRRGEEIAAIIFEPVVGNAGVLVPTEDFLKA 224 (424)
T ss_dssp CCCCGGGSEECCSSSCCBCEESSTTCCHHHHTTEEEECTTCHHHHHHHHHHHGGGEEEEEECSSBCTTSCBCCCHHHHHH
T ss_pred CCCcHHHHHhcCCcccccCCCCCCCCCCccCCceEeCCCCCHHHHHHHHHhCCCCEEEEEEeCCCCCCCCcCCCHHHHHH
Confidence 99887665443321100 0000 00 02355667789999999998654579999999998889988889999999
Q ss_pred HHHHHHhcCCEEEEeccccCCcccccCcccccCCCCCcEEEecccccCCccchhhheeCHHHHhhcCCC---CCCCCCCC
Q 017259 154 VRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPG---EHGSTFGG 230 (374)
Q Consensus 154 l~~l~~~~~i~li~Dea~~~~~~~g~~~~~~~~~~~~d~~s~sK~~~~G~~~~G~~~~~~~~~~~~~~~---~~~~~~~~ 230 (374)
|.++ ++||++||+||+|+|+ +.|..+..+.++..||++||||++++|+ |+|++++++++++.+... .+..+|++
T Consensus 225 l~~l-~~~g~~lI~DEv~~g~-~~g~~~~~~~~~~~~di~s~sK~l~~G~-~~G~~~~~~~~~~~~~~~~~~~~~~t~~~ 301 (424)
T 2e7u_A 225 LHEA-KAYGVLLIADEVMTGF-RLAFGGATELLGLKPDLVTLGKILGGGL-PAAAYAGRREIMEKVAPLGPVYQAGTLSG 301 (424)
T ss_dssp HHHG-GGGTCEEEEECTTTTT-TSSTTHHHHHHTCCCSEEEECGGGGTTS-SCEEEEECHHHHTTBTTTSSBCCCCTTCS
T ss_pred HHHH-HHcCCEEEEecCcccc-ccchhHHHHHhCCCcchhhhhhhhhCCc-ceEEEEEcHHHHhhhcccCCcccCCCCCC
Confidence 9999 9999999999999998 6676666666788899999999999998 999999999999988762 25678899
Q ss_pred CHHHHHHHHHHHHHHhh-hcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCC----------CchhH
Q 017259 231 NPLASAVAIASLDVIRD-EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTA----------LPVSA 299 (374)
Q Consensus 231 ~~~~~~aa~~al~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----------~~~~~ 299 (374)
++++++++.++++.+.+ +++.++++++++++++.|+++...+ +.....++.|.++++.++... .....
T Consensus 302 ~~~~~aaa~aal~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~-~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~ 380 (424)
T 2e7u_A 302 NPLAMAAGLATLELLEENPGYYAYLEDLGARLEAGLKEVLKEK-GLPHTVNRVGSMITVFFTEGPVVTFQDARRTDTELF 380 (424)
T ss_dssp CHHHHHHHHHHHHHHHHCTHHHHHHHHHHHHHHHHHHHHHHHT-TCCCEEEEETTEEEEESSSSCCCSHHHHTTSCHHHH
T ss_pred CHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhC-CCceEEEeeceEEEEEEeCCCCcchhhhcccCHHHH
Confidence 99999999999998877 7889999999999999999876555 354456788999999886411 01236
Q ss_pred HHHHHHHHHCCeEeccCCCCEEEEecCCCCCHHHHHHHHHHHHHHH
Q 017259 300 YDICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVL 345 (374)
Q Consensus 300 ~~~~~~l~~~Gi~v~~~~~~~lRi~~~~~~~~e~i~~~~~~l~~~~ 345 (374)
.++.+.|+++||.+.++....+|+ ++..+++++++++++|++++
T Consensus 381 ~~~~~~l~~~Gv~v~~~~~~~~~~--~~~~t~~~i~~~l~~l~~~l 424 (424)
T 2e7u_A 381 KRFFHGLLDRGIYWPPSNFEAAFL--SVAHREEDVEKTLEALRKAL 424 (424)
T ss_dssp HHHHHHHHTTTEECCSSSSSCEEC--CTTCCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHCCeEEeccCCCceEe--eccCCHHHHHHHHHHHHHhC
Confidence 689999999999999986555554 48899999999999998763
No 36
>1vef_A Acetylornithine/acetyl-lysine aminotransferase; PLP, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: PLP; 1.35A {Thermus thermophilus} SCOP: c.67.1.4 PDB: 1wkg_A* 1wkh_A*
Probab=100.00 E-value=9.2e-39 Score=300.84 Aligned_cols=325 Identities=33% Similarity=0.548 Sum_probs=262.8
Q ss_pred hHHHHHHHhccccCcCCCCCcHHHHHHHHhccc--CCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccC
Q 017259 2 KALQEQAEKLTLSSRAFYNDKFPVFAERLTSMF--GYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGC 79 (374)
Q Consensus 2 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~--~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~ 79 (374)
+|+.+++++..+..+.++.+...++++++++++ +.+++++++||++|++.++++++.+ .+| ++|++.+++
T Consensus 68 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~v~~~~gg~~a~~~al~~~~~~---~~~-----~~vi~~~~~ 139 (395)
T 1vef_A 68 EAVKRQAETLMAMPQTLPTPMRGEFYRTLTAILPPELNRVFPVNSGTEANEAALKFARAH---TGR-----KKFVAAMRG 139 (395)
T ss_dssp HHHHHHHHHCCCCCTTSCCHHHHHHHHHHHHTSCTTEEEEEEESSHHHHHHHHHHHHHHH---HSC-----CEEEEETTC
T ss_pred HHHHHHHHhCCCCccccCCHHHHHHHHHHHHhcCCCcCEEEEcCcHHHHHHHHHHHHHHH---hCC-----CeEEEEcCC
Confidence 566777766554444456788899999999998 6678999999999999999987421 235 889999999
Q ss_pred CCCcccccccccCCccccccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHH
Q 017259 80 FHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCS 159 (374)
Q Consensus 80 yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~ 159 (374)
||+....+....+......++.|...++..+++.|+++++++++ +++++++++|+++++|.+.++++++++|.++|+
T Consensus 140 y~~~~~~~~~~~g~~~~~~~~~p~~~~~~~~~~~d~~~l~~~i~---~~~~~v~~~~~~~~tG~~~~~~~~l~~i~~l~~ 216 (395)
T 1vef_A 140 FSGRTMGSLSVTWEPKYREPFLPLVEPVEFIPYNDVEALKRAVD---EETAAVILEPVQGEGGVRPATPEFLRAAREITQ 216 (395)
T ss_dssp CCCSSHHHHHTCCCHHHHGGGCSCSSCEEEECTTCHHHHHHHCC---TTEEEEEECSEETTTTSEECCHHHHHHHHHHHH
T ss_pred cCCCchhhhhhcCCcccccccCCCCCCeeEeCCCcHHHHHHHhc---cCEEEEEEeCccCCCCccCCCHHHHHHHHHHHH
Confidence 99987665555443333334445555566667779999999887 479999999998889988889999999999999
Q ss_pred hcCCEEEEeccccCCcccccCcccccCCCCCcEEEecccccCCccchhhheeCHHHHhhcCCCCCCCCCCCCHHHHHHHH
Q 017259 160 KYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAI 239 (374)
Q Consensus 160 ~~~i~li~Dea~~~~~~~g~~~~~~~~~~~~d~~s~sK~~~~G~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~ 239 (374)
+||++||+||+|+++++.|..+..+..+..+|++||||++++|+ |+|++++++++.+.+.......+++.++++++++.
T Consensus 217 ~~~~~li~Dea~~~~~~~g~~~~~~~~~~~~d~~s~sK~~~~g~-~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~ 295 (395)
T 1vef_A 217 EKGALLILDEIQTGMGRTGKRFAFEHFGIVPDILTLAKALGGGV-PLGVAVMREEVARSMPKGGHGTTFGGNPLAMAAGV 295 (395)
T ss_dssp HHTCEEEEECTTTTTTTTSSSSTHHHHTCCCSEEEECGGGGTTS-SCEEEEEEHHHHHTSCTTSSCCSSTTCHHHHHHHH
T ss_pred HcCCEEEEEecccCCccCCchhHhhhcCCCCCEEEEcccccCCC-ceEEEEehHHHHhhhccCCcCCCcCCCHHHHHHHH
Confidence 99999999999998877776555555667789999999999998 99999999888888876556678889999999999
Q ss_pred HHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCchhHHHHHHHHH-HCCeEeccCCC
Q 017259 240 ASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMK-ERGILAKPTHD 318 (374)
Q Consensus 240 ~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~-~~Gi~v~~~~~ 318 (374)
++++.+..+++.++++++.+++.+.|+++.. +.+...++.|.++++.++.. ..++.+.|. ++||.+++.+.
T Consensus 296 ~al~~~~~~~~~~~~~~~~~~l~~~l~~~~~---~~~~~~~~~g~~~~~~~~~~-----~~~l~~~l~~~~gi~v~~~~~ 367 (395)
T 1vef_A 296 AAIRYLERTRLWERAAELGPWFMEKLRAIPS---PKIREVRGMGLMVGLELKEK-----AAPYIARLEKEHRVLALQAGP 367 (395)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHHHHHHTSCC---TTEEEEEEETTEEEEEESSC-----SHHHHHHHHHHHCEECEESST
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHHhhc---CceEEEEEEEEEEEEEEcCh-----HHHHHHHHHHHCCeEEecCCC
Confidence 9999876667788888888888888876421 13334556788899888642 578999999 99999999878
Q ss_pred CEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 017259 319 TIVRLTPPLSISSNELQEGSKALHDVLE 346 (374)
Q Consensus 319 ~~lRi~~~~~~~~e~i~~~~~~l~~~~~ 346 (374)
+++||+++...+++++++++++|+++++
T Consensus 368 ~~iRi~~~~~~~~~~i~~~~~~l~~~l~ 395 (395)
T 1vef_A 368 TVIRFLPPLVIEKEDLERVVEAVRAVLA 395 (395)
T ss_dssp TEEEECCCTTCCHHHHHHHHHHHHHHHC
T ss_pred CEEEEeCCCCCCHHHHHHHHHHHHHHhC
Confidence 9999999889999999999999998763
No 37
>2eh6_A Acoat, acetylornithine aminotransferase; ARGD, structural genomics, NPPSFA, national project on prote structural and functional analyses; HET: PLP; 1.90A {Aquifex aeolicus}
Probab=100.00 E-value=8.3e-38 Score=292.18 Aligned_cols=324 Identities=35% Similarity=0.616 Sum_probs=258.4
Q ss_pred hHHHHHHHhccccCcCCCCCcHHHHHHHHhcccCC-CeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCC
Q 017259 2 KALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGY-DMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCF 80 (374)
Q Consensus 2 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~y 80 (374)
+++.+++.+..+....|+.+...+++++|++++|. +++++++||++|++.++++++.. ...+ ++++++|++.+++|
T Consensus 51 ~a~~~~~~~~~~~~~~y~~~~~~~l~~~la~~~g~~~~v~~~~g~t~a~~~~~~~~~~~--~~~~-~~g~~~vl~~~~~y 127 (375)
T 2eh6_A 51 EALKEQVEKLLHVSNLYENPWQEELAHKLVKHFWTEGKVFFANSGTESVEAAIKLARKY--WRDK-GKNKWKFISFENSF 127 (375)
T ss_dssp HHHHHHHHHCSCCCTTBCCHHHHHHHHHHHHTSSSCEEEEEESSHHHHHHHHHHHHHHH--HHHT-TCCCCEEEEEBTCC
T ss_pred HHHHHHHHhccccCcccCCHHHHHHHHHHHhhcCCCCeEEEeCchHHHHHHHHHHHHHH--hccC-CCCCCEEEEECCCc
Confidence 45666665543333345566788999999999988 89999999999999999875321 2001 22348999999999
Q ss_pred CCcccccccccCCccccccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHh
Q 017259 81 HGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSK 160 (374)
Q Consensus 81 hg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~ 160 (374)
|+....+....+...+..++.+...++..+++.|+++|+++++ ++++++++++++|++|.+.++++++++|.++|++
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~---~~~~~v~~~~~~~~tG~~~~~~~~l~~i~~~~~~ 204 (375)
T 2eh6_A 128 HGRTYGSLSATGQPKFHKGFEPLVPGFSYAKLNDIDSVYKLLD---EETAGIIIEVIQGEGGVNEASEDFLSKLQEICKE 204 (375)
T ss_dssp CCSSHHHHHHCBCGGGTTTTCSCCSSEEEECTTCHHHHHTTCC---TTEEEEEECSEETTTTSEECCHHHHHHHHHHHHH
T ss_pred CCCchhhhhhcCCccccCCCCCCCCCceeCCCchHHHHHHHhc---CCeEEEEEeCccCCCCCcCCCHHHHHHHHHHHHH
Confidence 9988777666555444444555555667777789999998886 4799999999999999998899999999999999
Q ss_pred cCCEEEEeccccCCcccccCcccccCCCCCcEEEecccccCCccchhhheeCHHHHhhcCCCCCCCCCCCCHHHHHHHHH
Q 017259 161 YNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIA 240 (374)
Q Consensus 161 ~~i~li~Dea~~~~~~~g~~~~~~~~~~~~d~~s~sK~~~~G~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~ 240 (374)
||+++|+||+|+++++.+..+....++..+|++||||.+++|+ |+|++++++++.+.+.......+++.++++++++.+
T Consensus 205 ~~~~li~De~~~~~~~~~~~~~~~~~~~~~d~~s~SK~~~~g~-~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (375)
T 2eh6_A 205 KDVLLIIDEVQTGIGRTGEFYAYQHFNLKPDVIALAKGLGGGV-PIGAILAREEVAQSFTPGSHGSTFGGNPLACRAGTV 283 (375)
T ss_dssp HTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEEEECGGGGTTS-CCEEEEEEHHHHTTCCTTSCCCSSTTCHHHHHHHHH
T ss_pred hCCEEEEeccccCCCCCCcchhhhhcCCCCCEEEEcccccCCC-CeEEEEEcHHHHhhhcCCCCCCCCCCCHHHHHHHHH
Confidence 9999999999998877665445555566789999999999998 999999999988888775566778889999999998
Q ss_pred HHHHHhhhcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCchhHHHHHHHHHHCCeEeccCCCCE
Q 017259 241 SLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTHDTI 320 (374)
Q Consensus 241 al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~~~ 320 (374)
+++.+. ++.++++++++++.+.|+++. . ...++.+.++++.++. +..++++.|.++||.+.+...++
T Consensus 284 ~l~~~~--~~~~~~~~~~~~l~~~L~~~~-----~-~~~~~~g~~~~~~~~~-----~~~~~~~~l~~~gi~~~~~~~~~ 350 (375)
T 2eh6_A 284 VVDEVE--KLLPHVREVGNYFKEKLKELG-----K-GKVKGRGLMLGLELER-----ECKDYVLKALEKGLLINCTAGKV 350 (375)
T ss_dssp HHHHHH--HHHHHHHHHHHHHHHHHHHTT-----S-SEEEEETTEEEEECSS-----CCHHHHHHHHHTTEECEEETTTE
T ss_pred HHHHHH--HHHHHHHHHHHHHHHHHHHHh-----c-CCceEEEEEEEEEEcC-----cHHHHHHHHHHCCCEEecCCCCE
Confidence 888764 567888888888888877642 2 2345678889988764 34689999999999999877899
Q ss_pred EEEecCCCCCHHHHHHHHHHHHHHH
Q 017259 321 VRLTPPLSISSNELQEGSKALHDVL 345 (374)
Q Consensus 321 lRi~~~~~~~~e~i~~~~~~l~~~~ 345 (374)
+|++++...+++++++++++|++++
T Consensus 351 iRi~~~~~~~~~~i~~~~~~l~~~l 375 (375)
T 2eh6_A 351 LRFLPPLIIQKEHIDRAISVLREIL 375 (375)
T ss_dssp EEECCCTTCCHHHHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhC
Confidence 9999998999999999999998753
No 38
>2cy8_A D-phgat, D-phenylglycine aminotransferase; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; 2.30A {Pseudomonas stutzeri}
Probab=100.00 E-value=2.4e-38 Score=303.34 Aligned_cols=332 Identities=23% Similarity=0.289 Sum_probs=247.1
Q ss_pred hHHHHHHHhccccCcCCCCCcHHHHHHHHhccc-CCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCC
Q 017259 2 KALQEQAEKLTLSSRAFYNDKFPVFAERLTSMF-GYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCF 80 (374)
Q Consensus 2 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~y 80 (374)
+|+.++++++.++ .+..+...+++++|++.+ +.+++++++||++|++.++++++.+ . ++ ++|++++++|
T Consensus 80 ~a~~~~~~~~~~~--~~~~~~~~~la~~l~~~~~~~~~v~~~~gg~eA~~~al~~ar~~--~-~~-----~~vi~~~~~y 149 (453)
T 2cy8_A 80 AAIAEALSHGVQY--AASHPLEVRWAERIVAAFPSIRKLRFTGSGTETTLLALRVARAF--T-GR-----RMILRFEGHY 149 (453)
T ss_dssp HHHHHHHTTTCSS--CSSCHHHHHHHHHHHHHCTTCSEEEEESCHHHHHHHHHHHHHHH--H-CC-----CEEEEECC--
T ss_pred HHHHHHHHhCCCC--CCCCHHHHHHHHHHHhhCCCCCEEEEeCCHHHHHHHHHHHHHHh--h-CC-----CEEEEEcCCc
Confidence 5666777664332 356778888999999877 7889999999999999999986532 1 22 7899999999
Q ss_pred CCcccccccccCC----ccccccCC-CCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHH
Q 017259 81 HGRTLAAISMSCD----NEAIRGFG-PLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVR 155 (374)
Q Consensus 81 hg~~~~~~~~~~~----~~~~~~~~-~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~ 155 (374)
||.+.......+. +.. .+.. +...++..++++|+++|+++++++++++++++++|+++++|.+.++++++++|.
T Consensus 150 hg~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~~~~tG~~~~~~~~l~~l~ 228 (453)
T 2cy8_A 150 HGWHDFSASGYNSHFDGQPA-PGVLPETTANTLLIRPDDIEGMREVFANHGSDIAAFIAEPVGSHFGVTPVSDSFLREGA 228 (453)
T ss_dssp ---------------------------CGGGEEEECTTCHHHHHHHHHHHGGGEEEEEECSSEHHHHTEECCHHHHHHHH
T ss_pred CCCchhhHhhcCCccCCCcC-CCCCccccCceeecCCCCHHHHHHHHHhcCCCEEEEEECCCCCCCCCcCCCHHHHHHHH
Confidence 9988766543321 110 1110 011234556778999999999865457999999999888888888999999999
Q ss_pred HHHHhcCCEEEEeccccCCcccccCcccccCCCCCcEEEecccccCCccchhhheeCHHHHhhcCC-----CCCCCCCCC
Q 017259 156 DLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQP-----GEHGSTFGG 230 (374)
Q Consensus 156 ~l~~~~~i~li~Dea~~~~~~~g~~~~~~~~~~~~d~~s~sK~~~~G~~~~G~~~~~~~~~~~~~~-----~~~~~~~~~ 230 (374)
++|++||++||+||+|+|+ +.|..+..+.+++.||++|+||++++|+ |+|++++++++++.+.. ..+..++++
T Consensus 229 ~l~~~~g~~lI~DEv~~g~-~~g~~~~~~~~~~~~di~s~sK~l~~G~-~~G~v~~~~~~~~~l~~~~~~~~~~~~t~~~ 306 (453)
T 2cy8_A 229 ELARQYGALFILDEVISGF-RVGNHGMQALLDVQPDLTCLAKASAGGL-PGGILGGREDVMGVLSRGSDRKVLHQGTFTG 306 (453)
T ss_dssp HHHHHTTCEEEEECTTTTT-TTCTTHHHHHHTCCCSEEEEEGGGGTTS-SCEEEEECHHHHTTSSSCC---------CCC
T ss_pred HHHHHcCCEEEEecCcccc-ccCchhhhHHhCCCCcEEEEChhhhCCc-ceEEEechHHHHHHhccccCCCceeCCCCCC
Confidence 9999999999999999998 7776666666788899999999999998 99999999999988876 135568899
Q ss_pred CHHHHHHHHHHHHH-HhhhcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEecc-----CC----------
Q 017259 231 NPLASAVAIASLDV-IRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDK-----TA---------- 294 (374)
Q Consensus 231 ~~~~~~aa~~al~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~-----~~---------- 294 (374)
++++++++.++++. + .+++.++++++.+++++.|+++...++ .....++.|.++++.++. ..
T Consensus 307 n~~~~aa~~aal~~~~-~~~~~~~~~~~~~~l~~~L~~~~~~~~-~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~ 384 (453)
T 2cy8_A 307 NPITAAAAIAAIDTIL-EDDVCAKINDLGQFAREAMNHLFARKG-LNWLAYGRFSGFHLMPGLPPNTTDTGSITRAEVAR 384 (453)
T ss_dssp CHHHHHHHHHHHHHHH-HTTHHHHHHHHHHHHHHHHHHHHHHTT-CCEEEECCTTEEEEEETSCTTCCCCHHHHTTCSCC
T ss_pred CHHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHHHHHHHHHhhCC-CcEEEEEeeeEEEEEEecccccccccccccccccc
Confidence 99999999999998 7 678899999999999999998765553 555567788999998864 10
Q ss_pred -CchhHHHHHHHHHHCCeEeccCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhccCCcCC
Q 017259 295 -LPVSAYDICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVLELDLPKMR 353 (374)
Q Consensus 295 -~~~~~~~~~~~l~~~Gi~v~~~~~~~lRi~~~~~~~~e~i~~~~~~l~~~~~~~~~~~~ 353 (374)
......++++.|+++||.+++.. .+|+ ++..+++++++++++|+++++ ++.+.+
T Consensus 385 ~~~~~~~~l~~~l~~~Gv~v~~~~--~~~l--~~~~t~~~i~~~l~~l~~~l~-~~~~~~ 439 (453)
T 2cy8_A 385 PDVKMIAAMRMALILEGVDIGGRG--SVFL--SAQHEREHVEHLVTTFDRVLD-RLADEN 439 (453)
T ss_dssp CCHHHHHHHHHHHHHTTEECBTTT--EEEC--CTTCCHHHHHHHHHHHHHHHH-HHHHTT
T ss_pred ccHHHHHHHHHHHHHCCeEEeCCC--CEEe--eccCCHHHHHHHHHHHHHHHH-HHHhCC
Confidence 01136789999999999997653 3554 588999999999999999998 765433
No 39
>2yky_A Beta-transaminase; transferase; HET: PLP SFE; 1.69A {Mesorhizobium SP} PDB: 2ykv_A* 2yku_A* 2ykx_A*
Probab=100.00 E-value=4.4e-42 Score=326.80 Aligned_cols=323 Identities=22% Similarity=0.291 Sum_probs=266.2
Q ss_pred ChHHHHHHHhccccCcCCCCCcHHHHHHHHhccc-CCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccC
Q 017259 1 MKALQEQAEKLTLSSRAFYNDKFPVFAERLTSMF-GYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGC 79 (374)
Q Consensus 1 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~ 79 (374)
++|+.++++++.. ..++++...+|+++|++++ +.+++++++||++|++.|+++++.+. ++++||+++++
T Consensus 122 ~~Av~~q~~~~~~--~~~~~~~~~~Lae~L~~~~p~~~~v~~~nSGseA~~~Aik~ar~~t--------gr~~ii~~~~~ 191 (465)
T 2yky_A 122 RAAVERALAVGLN--LSTQTENEALFAEAVCDRFPSIDLVRFTNSGTEANLMALATATAIT--------GRKTVLAFDGG 191 (465)
Confidence 3677777777432 3467889999999999998 78899999999999999999986431 23899999999
Q ss_pred CCCcccccccccCCccccccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHH
Q 017259 80 FHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCS 159 (374)
Q Consensus 80 yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~ 159 (374)
|||.+.... ++ + ...++. ..+..++++|+++|+++++++++++++|+++|+++++|.+.++++++++|.++|+
T Consensus 192 yHG~~~~~~--sg-~-~~~g~~---~~~~~~~~~d~~~l~~~l~~~~~~~aavi~epv~~~~G~~~~~~~~l~~l~~l~~ 264 (465)
T 2yky_A 192 YHGGLLNFA--SG-H-APTNAP---YHVVLGVYNDVEGTADLLKRHGHDCAAILVEPMLGAGGCVPAERAFLDLLRAEAS 264 (465)
Confidence 999988766 22 1 111111 1345567789999999998665689999999998889988989999999999999
Q ss_pred hcCCEEEEeccccCCcccccCcccccCCCCCcEEEecccccCCccchhhheeCHHHHhhcCC-----CCCCCCCCCCHHH
Q 017259 160 KYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQP-----GEHGSTFGGNPLA 234 (374)
Q Consensus 160 ~~~i~li~Dea~~~~~~~g~~~~~~~~~~~~d~~s~sK~~~~G~~~~G~~~~~~~~~~~~~~-----~~~~~~~~~~~~~ 234 (374)
+||++||+||+|+ + +.|..++.+.+++.||+++|||++++|+ |+||+++++++++.+.+ ..+..||++++++
T Consensus 265 ~~g~llI~DEv~~-~-r~g~~~a~~~~gv~pDi~t~sK~lg~G~-piG~v~~~~~i~~~l~~~~~g~~~~~~T~~~npla 341 (465)
T 2yky_A 265 RCGALLIFDEVMT-S-RLSGGGAQEMLGISADLTTLGKYIGGGM-SFGAFGGRRDLMERFDPARDGAFAHAGTFNNNILT 341 (465)
Confidence 9999999999999 7 7787777788888999999999999998 99999999999998876 2467889999999
Q ss_pred HHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCC----------chhHHHHHH
Q 017259 235 SAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTAL----------PVSAYDICL 304 (374)
Q Consensus 235 ~~aa~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----------~~~~~~~~~ 304 (374)
+++++++++.++++++.++++++.++++++|+++...+ +.+...++.|.++++.+.+... .....++++
T Consensus 342 ~aAa~aaL~~l~~~~~~~~~~~~~~~l~~~L~~~~~~~-~~~~~v~g~G~~~~i~~~~~~~~~~~~~~~~d~~~~~~~~~ 420 (465)
T 2yky_A 342 MSAGHAALTQIYTRQAASDLSASGDRFRANLNRIAVEN-QAPLQFTGLGSLGTIHFSRAPIRSAGDVRAADQQLKELFFF 420 (465)
Confidence 99999999998888899999999999999999886554 3556678889999998754110 012567999
Q ss_pred HHHHCCeEeccCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhccC
Q 017259 305 KMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVLELDL 349 (374)
Q Consensus 305 ~l~~~Gi~v~~~~~~~lRi~~~~~~~~e~i~~~~~~l~~~~~~~~ 349 (374)
.|+++||++.|..... +++.++++|+++++++|+++++ ++
T Consensus 421 ~ll~~GV~v~p~~~~~----~s~~~t~edid~~l~~l~~~l~-~~ 460 (465)
T 2yky_A 421 HMLRKGIYLAPRGMYA----LSLEIADAGRDAFAEALADFIG-EQ 460 (465)
Confidence 9999999999875322 6678999999999999999988 65
No 40
>3l8a_A METC, putative aminotransferase, probable beta-cystathi; beta-cystathionase, lyase; HET: PLP; 1.54A {Streptococcus mutans}
Probab=100.00 E-value=3.7e-33 Score=264.83 Aligned_cols=315 Identities=13% Similarity=0.123 Sum_probs=223.8
Q ss_pred hHHHHHHHhccccCcCCCCCcHHHHHHHHhcccC----CCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEec
Q 017259 2 KALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFG----YDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCC 77 (374)
Q Consensus 2 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~----~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~ 77 (374)
+|+.+++++..+.++....+..+++++++++.++ .+++++++|+++|++.+++++ .++| |+|++..
T Consensus 81 ~a~~~~~~~~~~~y~~~~~~l~~~l~~~l~~~~g~~~~~~~v~~~~g~~ea~~~a~~~~-----~~~g-----d~Vi~~~ 150 (421)
T 3l8a_A 81 EAIINYGREHIFGYNYFNDDLYQAVIDWERKEHDYAVVKEDILFIDGVVPAISIALQAF-----SEKG-----DAVLINS 150 (421)
T ss_dssp HHHHHHHHHCCSSCBCCCHHHHHHHHHHHHHHHCCCCCGGGEEEESCHHHHHHHHHHHH-----SCTE-----EEEEEEE
T ss_pred HHHHHHHhcCCcCCCCCCHHHHHHHHHHHHHHhCCCCCHHHEEEcCCHHHHHHHHHHHh-----cCCC-----CEEEECC
Confidence 5667777664444433445566678888877655 568999999999999999988 5667 9999999
Q ss_pred cCCCCcccccccccCCccccccCCCCC-CCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHH
Q 017259 78 GCFHGRTLAAISMSCDNEAIRGFGPLL-PGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRD 156 (374)
Q Consensus 78 ~~yhg~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~ 156 (374)
|+||+....+...+...... +.. .+..+ ..|+++|++++++ ++++++++++++|++|.+. +++.+++|.+
T Consensus 151 ~~y~~~~~~~~~~g~~~~~~----~~~~~~~~~--~~d~~~le~~i~~--~~~~~vil~~p~nptG~~~-~~~~l~~l~~ 221 (421)
T 3l8a_A 151 PVYYPFARTIRLNDHRLVEN----SLQIINGRF--EIDFEQLEKDIID--NNVKIYLLCSPHNPGGRVW-DNDDLIKIAE 221 (421)
T ss_dssp SCCHHHHHHHHHTTEEEEEE----ECEEETTEE--ECCHHHHHHHHHH--TTEEEEEEESSBTTTTBCC-CHHHHHHHHH
T ss_pred CCcHHHHHHHHHCCCEEEec----cccccCCCe--eeCHHHHHHHhhc--cCCeEEEECCCCCCCCCcC-CHHHHHHHHH
Confidence 99998766655443221111 100 00000 0289999999975 4799999999999999554 8889999999
Q ss_pred HHHhcCCEEEEeccccCCcccccCc-cccc-----CCCCCcEEEeccccc-CCccchhhheeC-HHHHhhcCCCC-CCCC
Q 017259 157 LCSKYNILMIADEIQSGLARSGRML-ASDW-----EEVRPDMVILGKALG-GGVIPVSAVLAD-KEVMLCIQPGE-HGST 227 (374)
Q Consensus 157 l~~~~~i~li~Dea~~~~~~~g~~~-~~~~-----~~~~~d~~s~sK~~~-~G~~~~G~~~~~-~~~~~~~~~~~-~~~~ 227 (374)
+|++||++||+||+|+++++.|..+ .+.. .+..+++.|+||+++ +|+ |+|+++++ +++.+.+.... ...+
T Consensus 222 l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~-~~G~~~~~~~~l~~~~~~~~~~~~~ 300 (421)
T 3l8a_A 222 LCKKHGVILVSDEIHQDLALFGNTHHSLNTLDASYKDFTIILSSATKTFNIAGT-KNSFAIIQNESLRRKFQYRQLANNQ 300 (421)
T ss_dssp HHHHHTCEEEEECTTTTCBCTTCCCCCGGGSCTTGGGTEEEEECSHHHHTCGGG-CCEEEECCSHHHHHHHHHHHHHTTC
T ss_pred HHHHcCCEEEEEccccccccCCCCCccHHHcCchhcCcEEEEEeChhhccCchh-heEeEEcCCHHHHHHHHHHHHhccc
Confidence 9999999999999999987776422 1111 223345678999998 798 99999987 88888776543 2345
Q ss_pred CCCCHHHHHHHHHHHHHHhh--hcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeE-EEEecc-CCCchhHHHHH
Q 017259 228 FGGNPLASAVAIASLDVIRD--EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFN-AVEFDK-TALPVSAYDIC 303 (374)
Q Consensus 228 ~~~~~~~~~aa~~al~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~-~~~~~~-~~~~~~~~~~~ 303 (374)
+++++++++++.++++...+ ++..++++++.+++.+.|++. | .+....+.+.++ |++++. .. +..++.
T Consensus 301 ~~~n~~~~~a~~aal~~~~~~~~~~~~~~~~~~~~l~~~L~~~----~-~i~~~~~~~~~~~~v~~~~~~~---~~~~l~ 372 (421)
T 3l8a_A 301 HEVPTVGMIATQAAFQYGKPWLEELKTVIEGNIKLVIKELEAK----T-KIKVMEPEGTYLVWLDFSAYAI---AQPQLS 372 (421)
T ss_dssp SCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHH----C-SCEEECCSBSSEEEEECGGGTC---CTTHHH
T ss_pred CCCCHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhC----C-CceEeCCCeeEEEEEeccccCC---CHHHHH
Confidence 57899999999999885322 234455555566666655544 2 233344445544 577764 22 467899
Q ss_pred HHHHH-CCeEeccC------CCCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 017259 304 LKMKE-RGILAKPT------HDTIVRLTPPLSISSNELQEGSKALHDVLE 346 (374)
Q Consensus 304 ~~l~~-~Gi~v~~~------~~~~lRi~~~~~~~~e~i~~~~~~l~~~~~ 346 (374)
+.|++ +||.+.++ +.+++||+++ .+++++++++++|+++++
T Consensus 373 ~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~--~~~~~i~~~l~~l~~~l~ 420 (421)
T 3l8a_A 373 EKLQNEAKVVLNDGAHFGKEGKYFARLNVA--TPKNTVQEALSRIISVFG 420 (421)
T ss_dssp HHHHHTTCEECEEGGGGCGGGTTEEEEECC--SCHHHHHHHHHHHHHHC-
T ss_pred HHHHHhCCEEEECchhhCCCCCCEEEEEec--CCHHHHHHHHHHHHHHHh
Confidence 99985 59999874 3689999966 689999999999998875
No 41
>3op7_A Aminotransferase class I and II; PLP-dependent transferase, structural genomics, joint center structural genomics, JCSG; HET: LLP UNL; 1.70A {Streptococcus suis 89} PDB: 3p6k_A*
Probab=100.00 E-value=7.3e-32 Score=251.92 Aligned_cols=310 Identities=15% Similarity=0.181 Sum_probs=224.7
Q ss_pred HHHHHHHhccccCcCCCCCcHHHHHHHHhccc---CCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccC
Q 017259 3 ALQEQAEKLTLSSRAFYNDKFPVFAERLTSMF---GYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGC 79 (374)
Q Consensus 3 a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~---~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~ 79 (374)
++.+++..... .+++.+...++++.+++++ +.+++++++||++|++.+++++ .++| |+|++..|+
T Consensus 47 ~~~~~~~~~~~--~y~~~~g~~~l~~~la~~~~~~~~~~v~~~~g~~~a~~~~~~~l-----~~~g-----d~Vl~~~~~ 114 (375)
T 3op7_A 47 DFYKKLQGTKL--NYGWIEGSPAFKKSVSQLYTGVKPEQILQTNGATGANLLVLYSL-----IEPG-----DHVISLYPT 114 (375)
T ss_dssp HHHHHHHTSCC--SSCCTTCCHHHHHHHHTTSSSCCGGGEEEESHHHHHHHHHHHHH-----CCTT-----CEEEEEESS
T ss_pred HHHHHHhcCCc--CCCCCCChHHHHHHHHHHhccCChhhEEEcCChHHHHHHHHHHh-----cCCC-----CEEEEeCCC
Confidence 44444444332 2334556788999999975 4579999999999999999988 5677 999999999
Q ss_pred CCCcccccccccCCccccccCCCCCCCceeccC-------CCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHH
Q 017259 80 FHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDF-------GDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLK 152 (374)
Q Consensus 80 yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~ 152 (374)
|++........+... ..++. .|+++++++++ ++++++++++++|++|.+. +.++++
T Consensus 115 ~~~~~~~~~~~g~~~-------------~~v~~~~~~~~~~d~~~l~~~l~---~~~~~v~~~~~~nptG~~~-~~~~l~ 177 (375)
T 3op7_A 115 YQQLYDIPKSLGAEV-------------DLWQIEEENGWLPDLEKLRQLIR---PTTKMICINNANNPTGAVM-DRTYLE 177 (375)
T ss_dssp CTHHHHHHHHTTCEE-------------EEEEEEGGGTTEECHHHHHHHCC---TTCCEEEEESSCTTTCCCC-CHHHHH
T ss_pred chhHHHHHHHcCCEE-------------EEEeccccCCCCCCHHHHHHhhc---cCCeEEEEcCCCCCCCCCC-CHHHHH
Confidence 988665544333221 11111 17999999887 5788999999999999777 799999
Q ss_pred HHHHHHHhcCCEEEEeccccCCcccccCcccccCCCCCcEEEeccccc-CCccchhhheeCHHHHhhcCCCCCCCCCCCC
Q 017259 153 AVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALG-GGVIPVSAVLADKEVMLCIQPGEHGSTFGGN 231 (374)
Q Consensus 153 ~l~~l~~~~~i~li~Dea~~~~~~~g~~~~~~~~~~~~d~~s~sK~~~-~G~~~~G~~~~~~~~~~~~~~~~~~~~~~~~ 231 (374)
+|.++|++||++||+||+|+++.+.+.....+.++..+++.|+||.++ +|+ |+||+++++++.+.+.......+++.+
T Consensus 178 ~i~~la~~~~~~li~De~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~-r~G~v~~~~~l~~~~~~~~~~~~~~~~ 256 (375)
T 3op7_A 178 ELVEIASEVGAYILSDEVYRSFSELDVPSIIEVYDKGIAVNSLSKTYSLPGI-RIGWVAANHQVTDILRDYRDYTMICAG 256 (375)
T ss_dssp HHHHHHHTTTCEEEEECCSCCCSSSCCCCHHHHCTTEEEEEESSSSSSCGGG-CCEEEECCHHHHHHHTTTGGGTTSCCC
T ss_pred HHHHHHHHcCCEEEEEcccccccccCCCchhhhcCCEEEEeEChhhcCCccc-ceEEEEeCHHHHHHHHHHHhhhccCCC
Confidence 999999999999999999998765432222333444456779999998 788 999999999999999877677788889
Q ss_pred HHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCchhHHHHHHHHH-HCC
Q 017259 232 PLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMK-ERG 310 (374)
Q Consensus 232 ~~~~~aa~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~-~~G 310 (374)
++.++++.++++.. +++.++.++..+..++.+.+.....|.+....+..+.+.++.++... +..++++.|+ ++|
T Consensus 257 ~~~~~~~~~~l~~~--~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~ll~~~g 331 (375)
T 3op7_A 257 VFDDLVAQLALAHY--QEILERNRHILEENLAILDQWIEEEPLVSYIRPAVVSTSFVKIAVDM---PMEDFCLQLLQEHG 331 (375)
T ss_dssp HHHHHHHHHHHHTH--HHHHHHHHHHHHHHHHHHHHHHHHCTTEEECCCSSSSCEEEEECCSS---CHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHhcc--HHHHHHHHHHHHHHHHHHHHHHhhCCCceEecCCCeEEEeEEcCCCC---CHHHHHHHHHHhCC
Confidence 99999888888743 23344444443444444444433333222222233456666665443 6788888885 789
Q ss_pred eEeccCC----CCEEEEecCCCCCHHHHHHHHHHHHHHHhccCC
Q 017259 311 ILAKPTH----DTIVRLTPPLSISSNELQEGSKALHDVLELDLP 350 (374)
Q Consensus 311 i~v~~~~----~~~lRi~~~~~~~~e~i~~~~~~l~~~~~~~~~ 350 (374)
|.+.++. .+++|+++ ..+.+++++++++|+++++ ++.
T Consensus 332 i~v~~g~~~~~~~~iRi~~--~~~~~~i~~~l~~l~~~l~-~~~ 372 (375)
T 3op7_A 332 VLLVPGNRFERDGYVRLGF--ACEQETLIKGLEKLSQFLR-RFD 372 (375)
T ss_dssp EECEEGGGGTCTTEEEECC--CSCHHHHHHHHHHHHHHHG-GGC
T ss_pred EEEeChhhhCCCCeEEEEe--cCCHHHHHHHHHHHHHHHH-HHh
Confidence 9998763 68999994 4566899999999999998 653
No 42
>3aow_A Putative uncharacterized protein PH0207; protein-PLP-AKG triple complex, schiff-base linkage, kynuren aminotransferase; HET: PLP AKG; 1.56A {Pyrococcus horikoshii} PDB: 3aov_A* 3ath_A* 3av7_A* 1x0m_A 1wst_A*
Probab=100.00 E-value=5.1e-32 Score=258.81 Aligned_cols=294 Identities=17% Similarity=0.215 Sum_probs=212.1
Q ss_pred CcHHHHHHHHhccc----CC---CeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccCC
Q 017259 21 DKFPVFAERLTSMF----GY---DMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCD 93 (374)
Q Consensus 21 ~~~~~l~~~l~~~~----~~---~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~~ 93 (374)
....++++.+++++ |. +++++|+|+++|++.+++++ ..+| |+|++..|+|++....+...+..
T Consensus 118 ~g~~~lr~~ia~~~~~~~g~~~~~~v~~t~G~~~al~~~~~~l-----~~~G-----d~Vlv~~p~y~~~~~~~~~~g~~ 187 (448)
T 3aow_A 118 KGFTPLRETLMKWLGKRYGISQDNDIMITSGSQQALDLIGRVF-----LNPG-----DIVVVEAPTYLAALQAFNFYEPQ 187 (448)
T ss_dssp TCCHHHHHHHHHHHHHHHCCCTTSEEEEESSHHHHHHHHHHHH-----CCTT-----CEEEEEESCCHHHHHHHHTTCCE
T ss_pred CCcHHHHHHHHHHHHHhcCcCChhhEEEeCcHHHHHHHHHHHH-----cCCC-----CEEEEeCCChHHHHHHHHHcCCE
Confidence 34556666666655 64 79999999999999999988 5667 99999999999876655443321
Q ss_pred ccccccCCCCCCCceeccC----CCHHHHHHHHHh---cCCcEEEEEE-ccccCCCCcccCChhHHHHHHHHHHhcCCEE
Q 017259 94 NEAIRGFGPLLPGHLKVDF----GDITALEKIFKE---SGDQIAGFLF-EPIQGEAGVIIPPDGYLKAVRDLCSKYNILM 165 (374)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~----~d~~~le~~l~~---~~~~~~~vi~-~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~l 165 (374)
+..++. .|+++|+++++. ...+++++++ .+++|++|.+. +.+.+++|.++|++||++|
T Consensus 188 -------------~~~v~~~~~g~d~~~L~~~l~~~~~~~~~~k~v~~~~~~~NPtG~~~-~~~~l~~i~~la~~~~~~l 253 (448)
T 3aow_A 188 -------------YIQIPLDDEGMKVEILEEKLKELKSQGKKVKVVYTVPTFQNPAGVTM-NEDRRKYLLELASEYDFIV 253 (448)
T ss_dssp -------------EEEEEEETTEECHHHHHHHHHHHHHTTCCEEEEEECCSSCTTTCCCC-CHHHHHHHHHHHHHHTCEE
T ss_pred -------------EEEeccCCCCCCHHHHHHHHhhhhccCCCCeEEEECCCCCCCcCCCC-CHHHHHHHHHHHHHcCCEE
Confidence 112221 279999999872 1136888754 55778888776 7999999999999999999
Q ss_pred EEeccccCCcccccCc-cc---ccCCCCCcEEEecccccCCccchhhheeCHHHHhhcCCCCCCCCCCCCHHHHHHHHHH
Q 017259 166 IADEIQSGLARSGRML-AS---DWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIAS 241 (374)
Q Consensus 166 i~Dea~~~~~~~g~~~-~~---~~~~~~~d~~s~sK~~~~G~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~a 241 (374)
|+||+|+++.+.|... .+ +..+...++.||||.+++|+ |+||+++++++.+.+.......+++.+++++.++.++
T Consensus 254 I~De~y~~~~~~g~~~~~~~~~~~~~~vi~~~S~SK~~~~Gl-riG~v~~~~~l~~~l~~~~~~~~~~~~~~~q~a~~~~ 332 (448)
T 3aow_A 254 VEDDPYGELRYSGNPEKKIKALDNEGRVIYLGTFSKILAPGF-RIGWMVGDPGIIRKMEIAKQSTDLCTNVFGQVVAWRY 332 (448)
T ss_dssp EEECSCTTCBCSSCCCCCTGGGCTTSCEEEEEESTTTTCGGG-CCEEEEECHHHHHHHHHHHHHHHSSCCHHHHHHHHHH
T ss_pred EEECCCccccCCCCCCcCHHhcCCCCCEEEEccchhhccccc-cEEEEEeCHHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 9999999876655421 11 11223345669999999999 9999999999988887544444667799999998888
Q ss_pred HHHHhhhc----HHHHHHHHHHHHHHHHHHHHHhCCC-ceeeEEEEeeeEEEEeccCCCchhHHHHHHHHHHCCeEeccC
Q 017259 242 LDVIRDEK----LAERSAHLGEELRQHLFKIQQQFPN-YVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPT 316 (374)
Q Consensus 242 l~~~~~~~----~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~ 316 (374)
++....++ ..++++++++++.+.|++. +|. +....+..|.++|+.++... +..++++.|.++||.+.++
T Consensus 333 L~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~---~~~g~~~~~p~~g~~~~v~~~~~~---~~~~l~~~l~~~gV~v~pg 406 (448)
T 3aow_A 333 VDGGYLEKHIPEIRKFYKPRRDAMLEALEEF---MPEGVKWTKPEGGMFIWVTLPDGI---DSKKMLERAIKKGVAYVPG 406 (448)
T ss_dssp HHTTHHHHHHHHHHHHHHHHHHHHHHHHHHH---CCTTCEECCCSBSSEEEEECSTTC---CHHHHHHHHHHTTEECEEG
T ss_pred HHhCCHHHHHHHHHHHHHHHHHHHHHHHHHh---CCCCeEEeCCCccEEEEEEcCCCC---CHHHHHHHHHHCCcEEEcc
Confidence 87421122 3344445555555555443 331 22212334778888887543 6788999999999999874
Q ss_pred --------CCCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 017259 317 --------HDTIVRLTPPLSISSNELQEGSKALHDVLE 346 (374)
Q Consensus 317 --------~~~~lRi~~~~~~~~e~i~~~~~~l~~~~~ 346 (374)
..+++|++++. .+++++++++++|+++++
T Consensus 407 ~~f~~~~~~~~~iRls~~~-~~~e~i~~~~~~L~~~l~ 443 (448)
T 3aow_A 407 EAFYAHRDVKNTMRLNFTY-VDEDKIMEGIKRLAETIK 443 (448)
T ss_dssp GGGSTTCCCCSEEEEECSS-SCTHHHHHHHHHHHHHHH
T ss_pred hhhcCCCCCCCEEEEEeCC-CCHHHHHHHHHHHHHHHH
Confidence 25799999775 388999999999999987
No 43
>1yiz_A Kynurenine aminotransferase; glutamine transaminase; kynurenic acid, mosquito, PLP-enzyme, pyridoxal phosphate, PLP; HET: LLP; 1.55A {Aedes aegypti} SCOP: c.67.1.1 PDB: 1yiy_A* 2r5c_A* 2r5e_A*
Probab=100.00 E-value=1.9e-31 Score=253.56 Aligned_cols=301 Identities=14% Similarity=0.146 Sum_probs=211.0
Q ss_pred HHHHHHHHhcc----cC----CC-eEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccCC
Q 017259 23 FPVFAERLTSM----FG----YD-MVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCD 93 (374)
Q Consensus 23 ~~~l~~~l~~~----~~----~~-~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~~ 93 (374)
..++++.++++ +| .+ ++++++|+++|++.+++++ ..+| |+|++..|+||+....+...+..
T Consensus 79 ~~~l~~~la~~l~~~~g~~~~~~~~v~~~~g~~~a~~~~~~~~-----~~~g-----d~Vl~~~p~y~~~~~~~~~~g~~ 148 (429)
T 1yiz_A 79 HPRLVQALSKLYSQLVDRTINPMTEVLVTVGAYEALYATIQGH-----VDEG-----DEVIIIEPFFDCYEPMVKAAGGI 148 (429)
T ss_dssp CHHHHHHHHHHHHHHHTSCCCTTTSEEEESHHHHHHHHHHHHH-----CCTT-----CEEEEEESCCTTHHHHHHHTTCE
T ss_pred cHHHHHHHHHHHHHHhCCCCCCcCCEEEecChHHHHHHHHHHh-----cCCC-----CEEEEcCCCchhHHHHHHHcCCE
Confidence 44555555554 24 46 8999999999999999988 4567 99999999999976655433322
Q ss_pred ccccccCCCCC--CCceeccC-CCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEecc
Q 017259 94 NEAIRGFGPLL--PGHLKVDF-GDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEI 170 (374)
Q Consensus 94 ~~~~~~~~~~~--~~~~~~~~-~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea 170 (374)
.... ...+.. .......+ .|+++|+++++ ++++++++++++|++|.+. +++++++|.++|++||++||+||+
T Consensus 149 ~~~~-~~~~~~~~~~~~~~~~~~d~~~l~~~l~---~~~~~v~~~~p~nptG~~~-~~~~l~~i~~~~~~~~~~li~De~ 223 (429)
T 1yiz_A 149 PRFI-PLKPNKTGGTISSADWVLDNNELEALFN---EKTKMIIINTPHNPLGKVM-DRAELEVVANLCKKWNVLCVSDEV 223 (429)
T ss_dssp EEEE-ECBCCCSSSSEEGGGCBCCHHHHHHHCC---TTEEEEEEESSCTTTCCCC-CHHHHHHHHHHHHHHTCEEEEECT
T ss_pred EEEE-eCCcccccccccccCcccCHHHHHHHhc---cCceEEEECCCCCCCCccC-CHHHHHHHHHHHHHcCcEEEEecc
Confidence 1111 110000 00000012 37999998886 5789999999999999776 789999999999999999999999
Q ss_pred ccCCcccccC-ccccc----CCCCCcEEEeccccc-CCccchhhheeCHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHH
Q 017259 171 QSGLARSGRM-LASDW----EEVRPDMVILGKALG-GGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDV 244 (374)
Q Consensus 171 ~~~~~~~g~~-~~~~~----~~~~~d~~s~sK~~~-~G~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~al~~ 244 (374)
|+++.+.|.. ..+.. .+..+.+.|+||.++ +|+ |+||+++++++++.+.......+++.++++++++.++++.
T Consensus 224 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~sK~~~~~G~-r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~ 302 (429)
T 1yiz_A 224 YEHMVFEPFEHIRICTLPGMWERTITIGSAGKTFSLTGW-KIGWAYGPEALLKNLQMVHQNCVYTCATPIQEAIAVGFET 302 (429)
T ss_dssp TTTCBCTTSCCCCGGGSTTTGGGEEEEEEHHHHHTCGGG-CCEEEESCHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHH
T ss_pred ccccccCCCCCcChhhccCCcCceEEEecchhccCCCCc-ceEEEEeCHHHHHHHHHHHhhcccCCChHHHHHHHHHHhc
Confidence 9987665532 12211 223334669999998 788 9999999999888887654566788899999999999887
Q ss_pred -----HhhhcHH----HHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCC---------chhHHHHHHHH
Q 017259 245 -----IRDEKLA----ERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTAL---------PVSAYDICLKM 306 (374)
Q Consensus 245 -----~~~~~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~---------~~~~~~~~~~l 306 (374)
...+++. ++++++++++.+.|++. ++.......|.++|+.++.... ..+..+++++|
T Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-----g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 377 (429)
T 1yiz_A 303 ELKRLKSPECYFNSISGELMAKRDYMASFLAEV-----GMNPTVPQGGYFMVADWSSLDSKVDLTQETDARKDYRFTKWM 377 (429)
T ss_dssp HHTTTTSTTSHHHHHHHHHHHHHHHHHHHHHHH-----TCEEEECSBSSEEEEECCSSCTTTTCCSSSSSCHHHHHHHHH
T ss_pred ccccccchHHHHHHHHHHHHHHHHHHHHHHHhC-----CCcccCCCcceEEEEEcccccccccccccccCCCHHHHHHHH
Confidence 3223344 44445555555555543 2322222346788888865300 01567899988
Q ss_pred H-HCCeEeccCC-----------CCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 017259 307 K-ERGILAKPTH-----------DTIVRLTPPLSISSNELQEGSKALHDVLE 346 (374)
Q Consensus 307 ~-~~Gi~v~~~~-----------~~~lRi~~~~~~~~e~i~~~~~~l~~~~~ 346 (374)
. ++||.+.++. .+++||+++ .+++++++++++|+++++
T Consensus 378 ~~~~gv~v~~g~~f~~~~~~~~~~~~iRis~~--~~~e~i~~~l~~l~~~l~ 427 (429)
T 1yiz_A 378 TKSVGLQGIPPSAFYSEPNKHLGEDFVRYCFF--KKDENLQKAAEILRKWKG 427 (429)
T ss_dssp HHHTSEECBCGGGGSCGGGGGGTTTEEEEECC--SCHHHHHHHHHHHHHHSC
T ss_pred HHhCCEEEeCchHhCCCcccCCCCCeEEEEec--CCHHHHHHHHHHHHHhcc
Confidence 7 7899998741 579999976 589999999999998876
No 44
>2w8t_A SPT, serine palmitoyltransferase; HET: LLP; 1.25A {Sphingomonas paucimobilis} PDB: 2w8u_A* 2w8w_A* 2xbn_A* 2w8j_A* 2w8v_A* 2jg2_A* 2jgt_A 2x8u_A*
Probab=100.00 E-value=4.2e-31 Score=251.13 Aligned_cols=309 Identities=14% Similarity=0.089 Sum_probs=233.0
Q ss_pred hHHHHHHHhccc-cC----cCCCCCcHHHHHHHHhcccCCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEe
Q 017259 2 KALQEQAEKLTL-SS----RAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSC 76 (374)
Q Consensus 2 ~a~~~~~~~~~~-~~----~~~~~~~~~~l~~~l~~~~~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~ 76 (374)
+|+.+++.+... .. ..+..+...+++++|++++|.+++++++||++|+..+++++ .++| |.|++.
T Consensus 85 ~a~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~la~~~g~~~~i~~~sGs~a~~~al~~l-----~~~g-----d~vl~~ 154 (427)
T 2w8t_A 85 AAGKEALEKFGSGTCGSRMLNGTFHDHMEVEQALRDFYGTTGAIVFSTGYMANLGIISTL-----AGKG-----EYVILD 154 (427)
T ss_dssp HHHHHHHHHHCSCCCSCTTTTCCCHHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHH-----SCTT-----CEEEEE
T ss_pred HHHHHHHHHhCCCCcccccccCCcHHHHHHHHHHHHHhCCCceEEecCcHHHHHHHHHHh-----cCCC-----CEEEEC
Confidence 466666665221 11 11245778899999999999999999999999999998887 5667 999999
Q ss_pred ccCCCCcccccccccCCccccccCCCCCCCceeccCCCHHHHHHHHHhcCC-cEEEEEEccccCCCCcccCChhHHHHHH
Q 017259 77 CGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGD-QIAGFLFEPIQGEAGVIIPPDGYLKAVR 155 (374)
Q Consensus 77 ~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~-~~~~vi~~~~~~~~g~~~~~~~~l~~l~ 155 (374)
.++|.+.... ....+ ..+..++++|+++|+++++++++ ++++|++++++|++|.+.+ +++|.
T Consensus 155 ~~~h~~~~~~-~~~~g------------~~~~~~~~~d~~~le~~l~~~~~~~~~~v~~~~~~n~tG~~~~----l~~l~ 217 (427)
T 2w8t_A 155 ADSHASIYDG-CQQGN------------AEIVRFRHNSVEDLDKRLGRLPKEPAKLVVLEGVYSMLGDIAP----LKEMV 217 (427)
T ss_dssp TTCCHHHHHH-HHHSC------------SEEEEECTTCHHHHHHHHHTSCSSSCEEEEEESEETTTTEECC----HHHHH
T ss_pred CcccHHHHHH-HHHcC------------CeeEEeCCCCHHHHHHHHHhccCCCCeEEEEcCCCCCCCCccC----HHHHH
Confidence 8886443332 22222 23445566799999999986543 7899999999999999998 99999
Q ss_pred HHHHhcCCEEEEeccccCC--cccccCcccccCCCCCc----EEEecccccCCccchhhheeCHHHHhhcCCCC--CCCC
Q 017259 156 DLCSKYNILMIADEIQSGL--ARSGRMLASDWEEVRPD----MVILGKALGGGVIPVSAVLADKEVMLCIQPGE--HGST 227 (374)
Q Consensus 156 ~l~~~~~i~li~Dea~~~~--~~~g~~~~~~~~~~~~d----~~s~sK~~~~G~~~~G~~~~~~~~~~~~~~~~--~~~~ 227 (374)
++|++||++||+||+|+++ +..|.. ....+++.++ +.|+||+++ . ++||+++++++++.+.... ...+
T Consensus 218 ~l~~~~g~~li~Dea~~~~~~~~~g~~-~~~~~~~~~~~di~~~s~sK~~g--~-~gG~v~~~~~l~~~l~~~~~~~~~~ 293 (427)
T 2w8t_A 218 AVAKKHGAMVLVDEAHSMGFFGPNGRG-VYEAQGLEGQIDFVVGTFSKSVG--T-VGGFVVSNHPKFEAVRLACRPYIFT 293 (427)
T ss_dssp HHHHHTTCEEEEECTTTTTTSSTTSCC-HHHHTTCTTCCSEEEEESSSTTC--S-CCEEEEECCTTGGGGGGTCHHHHSS
T ss_pred HHHHHcCCEEEEECCccccccCCCCCc-hHhhcCCCcCCcEEEecchhhhc--c-CCCEEEeCHHHHHHHHHhccccccc
Confidence 9999999999999999964 222333 2233444444 569999996 4 6688999988888887542 1235
Q ss_pred CCCCHHHHHHHHHHHHHHhh-hcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEE-EeeeEEEEeccCCCchhHHHHHHH
Q 017259 228 FGGNPLASAVAIASLDVIRD-EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRG-RGLFNAVEFDKTALPVSAYDICLK 305 (374)
Q Consensus 228 ~~~~~~~~~aa~~al~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~ 305 (374)
++.+++.++++.++++.+.. +++.++++++.+++++.|+++. ++ +. ..+ .+.++++.+++.. ...++.+.
T Consensus 294 ~~~~~~~~aa~~~al~~~~~~~~~~~~~~~~~~~l~~~L~~~g--~~-~~--~~~~~~~~~~~~~~~~~---~~~~l~~~ 365 (427)
T 2w8t_A 294 ASLPPSVVATATTSIRKLMTAHEKRERLWSNARALHGGLKAMG--FR-LG--TETCDSAIVAVMLEDQE---QAAMMWQA 365 (427)
T ss_dssp CCCCHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHT--CE-ES--CSSCCSSEEEEEESSHH---HHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHcC--Cc-cc--CCCCCCCEEEEEECCHH---HHHHHHHH
Confidence 57788888888899998765 5778899999999999998762 21 11 122 5678888876432 57889999
Q ss_pred HHHCCeEeccCC-------CCEEEEecCCCCCHHHHHHHHHHHHHHHhccCC
Q 017259 306 MKERGILAKPTH-------DTIVRLTPPLSISSNELQEGSKALHDVLELDLP 350 (374)
Q Consensus 306 l~~~Gi~v~~~~-------~~~lRi~~~~~~~~e~i~~~~~~l~~~~~~~~~ 350 (374)
|.++||.+.++. .+++||+++..++++++++++++|+++++ ++.
T Consensus 366 L~~~Gi~v~~~~~~~~~~~~~~lRi~~~~~~t~e~i~~~~~~l~~~l~-~~~ 416 (427)
T 2w8t_A 366 LLDGGLYVNMARPPATPAGTFLLRCSICAEHTPAQIQTVLGMFQAAGR-AVG 416 (427)
T ss_dssp HHHTTEECEEECTTTSCTTCEEEEEECCTTCCHHHHHHHHHHHHHHHH-HHT
T ss_pred HHHCCeEEeeeCCCCCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHH-HhC
Confidence 999999998752 36899999988999999999999999998 653
No 45
>3euc_A Histidinol-phosphate aminotransferase 2; YP_297314.1, structur genomics, joint center for structural genomics, JCSG; HET: MSE; 2.05A {Ralstonia eutropha JMP134} SCOP: c.67.1.0
Probab=99.98 E-value=7e-31 Score=244.54 Aligned_cols=305 Identities=15% Similarity=0.082 Sum_probs=219.8
Q ss_pred hHHHHHHHhccccCcCCCCCcHHHHHHHHhcccCC---CeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEecc
Q 017259 2 KALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGY---DMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCG 78 (374)
Q Consensus 2 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~---~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~ 78 (374)
+|+.+++.... ...|+.+...++++++++++|. +++++|+|+++|++.+++.+ .++| |+|++..+
T Consensus 50 ~a~~~~~~~~~--~~~y~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~-----~~~g-----d~Vl~~~~ 117 (367)
T 3euc_A 50 SELAARLGEVA--LNRYPVPSSEALRAKLKEVMQVPAGMEVLLGNGSDEIISMLALAA-----ARPG-----AKVMAPVP 117 (367)
T ss_dssp HHHHHHHHHHH--TTCSCCCCHHHHHHHHHHHHTCCTTCEEEEEEHHHHHHHHHHHHT-----CCTT-----CEEEEEES
T ss_pred HHHHHHhhhhh--hhcCCCCcHHHHHHHHHHHhCCCCcceEEEcCCHHHHHHHHHHHH-----cCCC-----CEEEEcCC
Confidence 45555555321 1224456788999999999877 79999999999999999987 5667 99999999
Q ss_pred CCCCcccccccccCCccccccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHH
Q 017259 79 CFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLC 158 (374)
Q Consensus 79 ~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~ 158 (374)
+|++....+...+...... +...+. ..|+++++++++++ +++++++++++|++|.+. +.+.+++|.++|
T Consensus 118 ~~~~~~~~~~~~g~~~~~v----~~~~~~----~~d~~~l~~~l~~~--~~~~v~~~~~~nptG~~~-~~~~l~~i~~~~ 186 (367)
T 3euc_A 118 GFVMYAMSAQFAGLEFVGV----PLRADF----TLDRGAMLAAMAEH--QPAIVYLAYPNNPTGNLF-DAADMEAIVRAA 186 (367)
T ss_dssp CSCCSCHHHHTTTCEEEEE----ECCTTS----CCCHHHHHHHHHHH--CCSEEEEESSCTTTCCCC-CHHHHHHHHHHT
T ss_pred CHHHHHHHHHHcCCeEEEe----cCCCCC----CCCHHHHHHHhhcc--CCCEEEEcCCCCCCCCCC-CHHHHHHHHHhh
Confidence 9998766655443221111 110100 12899999999853 678888888889999877 788899999999
Q ss_pred Hhc--CCEEEEeccccCCcccccCcccccCCCCCcEEEecccccCCccchhhheeCHHHHhhcCCCCCCCCCCCCHHHHH
Q 017259 159 SKY--NILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASA 236 (374)
Q Consensus 159 ~~~--~i~li~Dea~~~~~~~g~~~~~~~~~~~~d~~s~sK~~~~G~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (374)
++| |+++|+||+|+++...+........+....+.|+||...+|+ |+||+++++++.+.+... ..+++.++++++
T Consensus 187 ~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~G~-r~G~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 263 (367)
T 3euc_A 187 QGSVCRSLVVVDEAYQPFAQESWMSRLTDFGNLLVMRTVSKLGLAGI-RLGYVAGDPQWLEQLDKV--RPPYNVNVLTEA 263 (367)
T ss_dssp BTTSCBCEEEEECTTCCSSSCCSGGGGGTCTTEEEEEECCCTTSCSC-CEEEEEECHHHHHHHGGG--CCSSCCCHHHHH
T ss_pred hhcCCCcEEEEeCcchhhcccchHHHHhhCCCEEEEecchhhccccc-CceeeeeCHHHHHHHHHh--CCCCCCCHHHHH
Confidence 999 999999999998754333222233333344569999944688 999999999998888753 346778999999
Q ss_pred HHHHHHHHHhh-hcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCchhHHHHHHHHHHCCeEecc
Q 017259 237 VAIASLDVIRD-EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKP 315 (374)
Q Consensus 237 aa~~al~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~ 315 (374)
++.++++.... ++..++++++.+++.+.|+ .+|++. ..++.+.++++.++ +..++.+.|.++||.+++
T Consensus 264 a~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~----~~~g~~-~~~~~~~~~~~~~~------~~~~l~~~l~~~gi~v~~ 332 (367)
T 3euc_A 264 TALFALEHVAVLDEQAAQLRAERSRVAEGMA----AHGGVT-VFPSAANFLLARVP------DAAQTFDRLLARKVLIKN 332 (367)
T ss_dssp HHHHHHTTHHHHHHHHHHHHHHHHHHHHHHH----TSTTCE-ECCCSSSEEEEECS------CHHHHHHHHHTTTEECEE
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHHHHHHHHH----hCCCcE-ECCCCCeEEEEECC------CHHHHHHHHHHCCeEEEE
Confidence 99988875111 1334444444444444443 343332 34456778887776 367899999999999987
Q ss_pred CC------CCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 017259 316 TH------DTIVRLTPPLSISSNELQEGSKALHDVLE 346 (374)
Q Consensus 316 ~~------~~~lRi~~~~~~~~e~i~~~~~~l~~~~~ 346 (374)
+. .+++||+++ +++++++++++|+++++
T Consensus 333 ~~~~~~~~~~~iRis~~---~~~~i~~~~~~l~~~l~ 366 (367)
T 3euc_A 333 VSKMHPLLANCLRVTVS---TPEENAQFLEAFAASLQ 366 (367)
T ss_dssp CGGGCGGGTTEEEEECC---CHHHHHHHHHHHHHHTC
T ss_pred CCccCCCCCCEEEEecC---CHHHHHHHHHHHHHHhc
Confidence 63 489999944 89999999999998875
No 46
>4dq6_A Putative pyridoxal phosphate-dependent transferas; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PLP; 1.50A {Clostridium difficile} PDB: 4dgt_A*
Probab=99.98 E-value=2.7e-31 Score=249.29 Aligned_cols=315 Identities=13% Similarity=0.061 Sum_probs=218.8
Q ss_pred hHHHHHHHhccccCcCCCCCcHHHHHHHHhcccC----CCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEec
Q 017259 2 KALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFG----YDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCC 77 (374)
Q Consensus 2 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~----~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~ 77 (374)
+|+.+++.+..+.++.+..+.++++++++++.++ .+++++++|+++|++.+++.+ .++| |+|++..
T Consensus 52 ~a~~~~~~~~~~~y~~~~~~~~~~l~~~l~~~~g~~~~~~~v~~~~g~~~a~~~~~~~~-----~~~g-----d~vl~~~ 121 (391)
T 4dq6_A 52 DSLKNRLEQEIYGYTTRPDSYNESIVNWLYRRHNWKIKSEWLIYSPGVIPAISLLINEL-----TKAN-----DKIMIQE 121 (391)
T ss_dssp HHHHHHHTTCCCCCBCCCHHHHHHHHHHHHHHHCCCCCGGGEEEESCHHHHHHHHHHHH-----SCTT-----CEEEECS
T ss_pred HHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcHHHeEEcCChHHHHHHHHHHh-----CCCC-----CEEEEcC
Confidence 4555666544333333456667778888888765 568999999999999999988 5667 9999999
Q ss_pred cCCCCcccccccccCCccccccCCCCC--CCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHH
Q 017259 78 GCFHGRTLAAISMSCDNEAIRGFGPLL--PGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVR 155 (374)
Q Consensus 78 ~~yhg~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~ 155 (374)
|+|++....+...+...... +.. .+.. .. -|+++++++++ + ++++++++++|++|.+. +.+.+++|.
T Consensus 122 ~~~~~~~~~~~~~g~~~~~~----~~~~~~~~~-~~-~d~~~l~~~l~---~-~~~v~i~~p~nptG~~~-~~~~l~~i~ 190 (391)
T 4dq6_A 122 PVYSPFNSVVKNNNRELIIS----PLQKLENGN-YI-MDYEDIENKIK---D-VKLFILCNPHNPVGRVW-TKDELKKLG 190 (391)
T ss_dssp SCCTHHHHHHHHTTCEEEEC----CCEECTTSC-EE-CCHHHHHHHCT---T-EEEEEEESSBTTTTBCC-CHHHHHHHH
T ss_pred CCCHHHHHHHHHcCCeEEee----eeeecCCCc-eE-eeHHHHHHHhh---c-CCEEEEECCCCCCCcCc-CHHHHHHHH
Confidence 99998766555443221111 110 0000 00 17999999887 3 88898988889999876 788899999
Q ss_pred HHHHhcCCEEEEeccccCCcccccCc-ccccCC-----CCCcEEEeccccc-CCccchhhheeCH-HHHhhcCCCC-CCC
Q 017259 156 DLCSKYNILMIADEIQSGLARSGRML-ASDWEE-----VRPDMVILGKALG-GGVIPVSAVLADK-EVMLCIQPGE-HGS 226 (374)
Q Consensus 156 ~l~~~~~i~li~Dea~~~~~~~g~~~-~~~~~~-----~~~d~~s~sK~~~-~G~~~~G~~~~~~-~~~~~~~~~~-~~~ 226 (374)
++|++||+++|+||+|+++.+.|... ...... ....+.|+||.++ +|+ |+||+++++ ++.+.+.... ...
T Consensus 191 ~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~-r~G~~~~~~~~~~~~~~~~~~~~~ 269 (391)
T 4dq6_A 191 DICLKHNVKIISDEIHSDIILKKHKHIPMASISKEFEKNTITCMAPTKTFNIAGL-QSSYVVLPDEKDYKLLDDAFTRID 269 (391)
T ss_dssp HHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSCHHHHHTEEEEECSHHHHTCGGG-CCEEEECCSHHHHHHHHHHHHHTT
T ss_pred HHHHHcCCEEEeeccccccccCCCCccCHHHcCccccCcEEEEEechhhccCccc-ceEEEEeCCHHHHHHHHHHHHhhc
Confidence 99999999999999999886665422 111111 1122448899998 788 999998875 7777776442 234
Q ss_pred CCCCCHHHHHHHHHHHHHHhh--hcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEecc-CCCchhHHHHH
Q 017259 227 TFGGNPLASAVAIASLDVIRD--EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDK-TALPVSAYDIC 303 (374)
Q Consensus 227 ~~~~~~~~~~aa~~al~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~~~ 303 (374)
+++.++++++++.++++...+ ++..++++++.+++.+.|++. +|++.......+.+.|+.++. .. +..++.
T Consensus 270 ~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ 343 (391)
T 4dq6_A 270 IKRNNCFSLVATEASYNNGESWLESFLEYLESNIDFAIKYINEN---MPKLKVRKPEGTYLLWVDFSALGL---SDEELE 343 (391)
T ss_dssp CCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHH---CTTSEECCCSBSSEEEEECGGGCC---CHHHHH
T ss_pred CCCCCHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHhh---CCCCEecCCCccEEEEEEhhhcCC---CHHHHH
Confidence 567899999999988875321 233445555555555555442 333222222234455577764 22 678999
Q ss_pred HHHHHC-CeEeccC------CCCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 017259 304 LKMKER-GILAKPT------HDTIVRLTPPLSISSNELQEGSKALHDVLE 346 (374)
Q Consensus 304 ~~l~~~-Gi~v~~~------~~~~lRi~~~~~~~~e~i~~~~~~l~~~~~ 346 (374)
+.|.++ ||.++++ ..+++|++++ .+++++++++++|+++++
T Consensus 344 ~~l~~~~gi~v~~g~~~~~~~~~~iRis~~--~~~~~i~~~l~~l~~~l~ 391 (391)
T 4dq6_A 344 SILVQKGKVALNQGNSFGIGGSGYQRINLA--CPRSMLEEALIRIKNAIN 391 (391)
T ss_dssp HHHHHTTCEECEEGGGGCTTCTTEEEEECC--SCHHHHHHHHHHHHHHHC
T ss_pred HHHHHhCCEEeeCchhhCCCCCCeEEEEEc--CCHHHHHHHHHHHHHHhC
Confidence 999998 9999874 2489999966 689999999999998763
No 47
>3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A {Lactobacillus delbrueckii subsp} SCOP: c.67.1.0
Probab=99.98 E-value=5.1e-31 Score=247.37 Aligned_cols=320 Identities=13% Similarity=0.136 Sum_probs=222.4
Q ss_pred hHHHHHHHhccccCcCCCCCcHHHHHHHHhcccC----CCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEec
Q 017259 2 KALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFG----YDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCC 77 (374)
Q Consensus 2 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~----~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~ 77 (374)
+|+.+++.+..+.++....+.++++++.+++.+| .+++++++|+++|++.+++.+ .++| |+|++..
T Consensus 47 ~a~~~~~~~~~~~y~~~~~~l~~~la~~l~~~~g~~~~~~~i~~~~g~~~a~~~~~~~l-----~~~g-----d~vl~~~ 116 (391)
T 3dzz_A 47 ASMEEKLKVAAFGYESVPAEYYKAVADWEEIEHRARPKEDWCVFASGVVPAISAMVRQF-----TSPG-----DQILVQE 116 (391)
T ss_dssp HHHHHHHTTCCCCCBCCCHHHHHHHHHHHHHHHSCCCCGGGEEEESCHHHHHHHHHHHH-----SCTT-----CEEEECS
T ss_pred HHHHHHHhcCcCCCCCCCHHHHHHHHHHHHHHhCCCCCHHHEEECCCHHHHHHHHHHHh-----CCCC-----CeEEECC
Confidence 4555555543332222234455667777776655 568999999999999999988 5667 9999999
Q ss_pred cCCCCcccccccccCCccccccCCCCCCCceeccC-CCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHH
Q 017259 78 GCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDF-GDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRD 156 (374)
Q Consensus 78 ~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~ 156 (374)
|+|++....+...+...... +.. ...-.+ .|++++++++++ ++++++++++++|++|.+. +++.+++|.+
T Consensus 117 ~~~~~~~~~~~~~g~~~~~~----~~~--~~~~~~~~d~~~l~~~l~~--~~~~~v~i~~p~nptG~~~-~~~~l~~i~~ 187 (391)
T 3dzz_A 117 PVYNMFYSVIEGNGRRVISS----DLI--YENSKYSVNWADLEEKLAT--PSVRMMVFCNPHNPIGYAW-SEEEVKRIAE 187 (391)
T ss_dssp SCCHHHHHHHHHTTCEEEEC----CCE--EETTEEECCHHHHHHHHTS--TTEEEEEEESSBTTTTBCC-CHHHHHHHHH
T ss_pred CCcHHHHHHHHHcCCEEEEe----eee--ecCCceeecHHHHHHHHhc--cCceEEEEECCCCCCCccc-CHHHHHHHHH
Confidence 99998766555443221111 110 000000 379999999974 3788998988999999876 7888999999
Q ss_pred HHHhcCCEEEEeccccCCcccccC-cccccCC-CCCc----EEEeccccc-CCccchhhheeC-HHHHhhcCCCCC-CCC
Q 017259 157 LCSKYNILMIADEIQSGLARSGRM-LASDWEE-VRPD----MVILGKALG-GGVIPVSAVLAD-KEVMLCIQPGEH-GST 227 (374)
Q Consensus 157 l~~~~~i~li~Dea~~~~~~~g~~-~~~~~~~-~~~d----~~s~sK~~~-~G~~~~G~~~~~-~~~~~~~~~~~~-~~~ 227 (374)
+|++||+++|+||+|+++.+.|.. ....... ..+| +.|+||.++ +|+ |+||++++ +++.+.+..... ..+
T Consensus 188 ~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~d~~i~~~s~sK~~g~~G~-r~G~~~~~~~~~~~~~~~~~~~~~~ 266 (391)
T 3dzz_A 188 LCAKHQVLLISDEIHGDLVLTDEDITPAFTVDWDAKNWVVSLISPSKTFNLAAL-HAACAIIPNPDLRARAEESFFLAGI 266 (391)
T ss_dssp HHHHTTCEEEEECTTTTCBCSSCCCCCGGGSCTTTGGGEEEEECSHHHHTCTTT-CCEEEECCSHHHHHHHHHHHHHHTC
T ss_pred HHHHCCCEEEEecccccccCCCCCceehhhcCccccCcEEEEEeChhhccccch-hheEEEECCHHHHHHHHHHHHhhcc
Confidence 999999999999999988766642 2222222 2256 458899998 798 99999986 888887765322 345
Q ss_pred CCCCHHHHHHHHHHHHHHhh--hcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCchhHHHHHHH
Q 017259 228 FGGNPLASAVAIASLDVIRD--EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLK 305 (374)
Q Consensus 228 ~~~~~~~~~aa~~al~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 305 (374)
++.++++++++.++++.... ++..++++++.+++.+.|++. +|++.......+.+.|+.++... .+..++.+.
T Consensus 267 ~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 341 (391)
T 3dzz_A 267 GEPNLLAIPAAIAAYEEGHDWLRELKQVLRDNFAYAREFLAKE---VPEVKVLDSNASYLAWVDISALG--MNAEDFCKY 341 (391)
T ss_dssp SSCCTTHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHH---CTTSEECCCCBSSEEEEECGGGC--SCHHHHHHH
T ss_pred CCCCHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhh---CCCcEEeccCceEEEEEehhhcC--CCHHHHHHH
Confidence 67888999999888876321 244555555666666666542 33332222233455567776421 167899999
Q ss_pred HH-HCCeEeccCC------CCEEEEecCCCCCHHHHHHHHHHHHHHHhccC
Q 017259 306 MK-ERGILAKPTH------DTIVRLTPPLSISSNELQEGSKALHDVLELDL 349 (374)
Q Consensus 306 l~-~~Gi~v~~~~------~~~lRi~~~~~~~~e~i~~~~~~l~~~~~~~~ 349 (374)
|+ ++||.++++. .+++|++++ .+++++++++++|+++++ ++
T Consensus 342 l~~~~gi~v~~g~~~~~~~~~~iRis~~--~~~~~i~~~l~~l~~~l~-~~ 389 (391)
T 3dzz_A 342 LREKTGLIISAGNGYRGNGHEFVRINLA--CPKELVIDGMQRLKQGVL-NL 389 (391)
T ss_dssp HHHHHCEECEESGGGCTTGGGEEEEECC--SCHHHHHHHHHHHHHHHH-TC
T ss_pred HHHhCCEEEeCchhhCCCCCCEEEEEec--CCHHHHHHHHHHHHHHHH-Hh
Confidence 96 8899998752 489999966 689999999999999998 65
No 48
>2zc0_A Alanine glyoxylate transaminase; alanine:glyoxylate aminotransferase, archaea, thermococcus L transferase; HET: PMP; 2.30A {Thermococcus litoralis}
Probab=99.98 E-value=3.5e-31 Score=250.00 Aligned_cols=315 Identities=18% Similarity=0.186 Sum_probs=223.3
Q ss_pred hHHHHHHHhccccCcCCCCCcHHHHHHHHhccc----C----CCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEE
Q 017259 2 KALQEQAEKLTLSSRAFYNDKFPVFAERLTSMF----G----YDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAII 73 (374)
Q Consensus 2 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~----~----~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~v 73 (374)
+|+.+++++......+.......++++.+++++ | .+++++|+|+++|++.+++++ .++| |+|
T Consensus 56 ~a~~~~~~~~~~~~~y~~~~~~~~l~~~la~~~~~~~g~~~~~~~v~~t~g~t~a~~~~~~~~-----~~~g-----d~v 125 (407)
T 2zc0_A 56 EIAKEVLEKEPKSVMYTPANGIPELREELAAFLKKYDHLEVSPENIVITIGGTGALDLLGRVL-----IDPG-----DVV 125 (407)
T ss_dssp HHHHHHHHHCGGGGSCCCTTCCHHHHHHHHHHHHHHSCCCCCGGGEEEESHHHHHHHHHHHHH-----CCTT-----CEE
T ss_pred HHHHHHHhhccccccCCCCCCCHHHHHHHHHHHHHhcCCCCCcceEEEecCHHHHHHHHHHHh-----cCCC-----CEE
Confidence 455566655321111122234566666666655 6 468999999999999999988 4567 999
Q ss_pred EEeccCCCCcccccccccCCccccccCCCCCCCceeccC----CCHHHHHHHHHh---cCCcEEEEE-EccccCCCCccc
Q 017259 74 VSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDF----GDITALEKIFKE---SGDQIAGFL-FEPIQGEAGVII 145 (374)
Q Consensus 74 i~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~d~~~le~~l~~---~~~~~~~vi-~~~~~~~~g~~~ 145 (374)
++..|+||+........+.. +..++. .|+++|++++++ ..+++++++ +++++|++|.+.
T Consensus 126 l~~~p~~~~~~~~~~~~g~~-------------~~~v~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~~~~~~~nptG~~~ 192 (407)
T 2zc0_A 126 ITENPSYINTLLAFEQLGAK-------------IEGVPVDNDGMRVDLLEEKIKELKAKGQKVKLIYTIPTGQNPMGVTM 192 (407)
T ss_dssp EEEESCCHHHHHHHHTTTCE-------------EEEEEEETTEECHHHHHHHHHHHHHTTCCEEEEEECCSSCTTTCCCC
T ss_pred EEeCCChHHHHHHHHHcCCE-------------EEEcccCCCCCCHHHHHHHHHhhhcccCCceEEEECCCCCCCCCcCC
Confidence 99999999875544332211 111111 279999999872 113678875 556788888876
Q ss_pred CChhHHHHHHHHHHhcCCEEEEeccccCCcccccC-cccccCC---CCCcEEEecccccCCccchhhheeCHHHHhhcCC
Q 017259 146 PPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRM-LASDWEE---VRPDMVILGKALGGGVIPVSAVLADKEVMLCIQP 221 (374)
Q Consensus 146 ~~~~~l~~l~~l~~~~~i~li~Dea~~~~~~~g~~-~~~~~~~---~~~d~~s~sK~~~~G~~~~G~~~~~~~~~~~~~~ 221 (374)
+.+++++|.++|++||++||+||+|+++.+.|.. .....++ ....+.|+||.+++|+ |+||+++++++.+.+..
T Consensus 193 -~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~G~-r~G~~~~~~~~~~~~~~ 270 (407)
T 2zc0_A 193 -SMERRKALLEIASKYDLLIIEDTAYNFMRYEGGDIVPLKALDNEGRVIVAGTLSKVLGTGF-RIGWIIAEGEILKKVLM 270 (407)
T ss_dssp -CHHHHHHHHHHHHHHTCEEEEECTTTTSBSSCSSCCCGGGGCSSCCEEEEEESTTTTCTTS-CCEEEECCHHHHHHHHH
T ss_pred -CHHHHHHHHHHHHHcCCEEEEECCCcccccCCCCCCChhhcCCCCCEEEEcccccccCCCc-ceEEEecCHHHHHHHHH
Confidence 7888999999999999999999999987655542 2222222 1224558999999998 99999999998888876
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHH--h-h--hcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCc
Q 017259 222 GEHGSTFGGNPLASAVAIASLDVI--R-D--EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALP 296 (374)
Q Consensus 222 ~~~~~~~~~~~~~~~aa~~al~~~--~-~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 296 (374)
.....+++.+++++.++.++++.. . . +...++++++.+++.+.|++.. |++....+..+.++|+.++...
T Consensus 271 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~---~~~~~~~~~~~~~~~~~~~~~~-- 345 (407)
T 2zc0_A 271 QKQPIDFCAPAISQYIALEYLKRGYFEKYHLEGALLGYKEKRDIMLKALENHL---PNAEFTKPIAGMFVMFFLPEGA-- 345 (407)
T ss_dssp HHTTTTSSSCHHHHHHHHHHHHTTHHHHHTTTTHHHHHHHHHHHHHHHHHHHC---TTSCBCCCSBSSEEEEECSTTC--
T ss_pred HHHhhcCCCCHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhC---CCCEEecCCCcEEEEEEcCCCC--
Confidence 555566777999999888888753 1 1 2456666777777777776542 2221112335678888886543
Q ss_pred hhHHHHHHHHHHC-CeEeccC--------CCCEEEEecCCCCCHHHHHHHHHHHHHHHhccC
Q 017259 297 VSAYDICLKMKER-GILAKPT--------HDTIVRLTPPLSISSNELQEGSKALHDVLELDL 349 (374)
Q Consensus 297 ~~~~~~~~~l~~~-Gi~v~~~--------~~~~lRi~~~~~~~~e~i~~~~~~l~~~~~~~~ 349 (374)
+..++.+.|.++ ||.+.++ ..+++||+++.. +++++++++++|+++++ ++
T Consensus 346 -~~~~l~~~l~~~~gi~v~~g~~~~~~~~~~~~iRis~~~~-~~~~i~~~~~~l~~~l~-~~ 404 (407)
T 2zc0_A 346 -DGISFANELMEREGVVVVPGKPFYTDESGKNAIRLNFSRP-SKEEIPIGIKKLAKLYK-EK 404 (407)
T ss_dssp -CHHHHHHHHHHHTCEECBCSGGGCSSSCCTTEEEEECSSS-CTTHHHHHHHHHHHHHH-HH
T ss_pred -CHHHHHHHHHHhCCeEEECchhccCCCCCCCeEEEEeCCC-CHHHHHHHHHHHHHHHH-HH
Confidence 678899999998 9999875 257999998766 89999999999999987 54
No 49
>3b46_A Aminotransferase BNA3; kynurenine aminotransferase, LLP, PLP, cytoplasm, mitochondrion, pyridoxal phosphate; HET: LLP; 2.00A {Saccharomyces cerevisiae}
Probab=99.97 E-value=2.6e-31 Score=254.06 Aligned_cols=300 Identities=13% Similarity=0.155 Sum_probs=211.4
Q ss_pred CcHHHHHHHHhcccCC----CeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccCCccc
Q 017259 21 DKFPVFAERLTSMFGY----DMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEA 96 (374)
Q Consensus 21 ~~~~~l~~~l~~~~~~----~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~ 96 (374)
++++.+++.+.+.+|. +++++|+|+++|++.+++++ ..+| |+|++.+|+|+++...+...+.....
T Consensus 99 ~lr~~ia~~l~~~~g~~~~~~~v~~t~G~~~al~~~~~~l-----~~~g-----d~Vlv~~p~y~~~~~~~~~~g~~~~~ 168 (447)
T 3b46_A 99 SLINSLIKLYSPIYNTELKAENVTVTTGANEGILSCLMGL-----LNAG-----DEVIVFEPFFDQYIPNIELCGGKVVY 168 (447)
T ss_dssp HHHHHHHHHHTTTTTSCCCGGGEEEESHHHHHHHHHHHHH-----CCTT-----CEEEEEESCCTTHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHHHHhcCCCCChhhEEEeCCHHHHHHHHHHHH-----cCCC-----CEEEEeCCCchhHHHHHHHcCCEEEE
Confidence 4455566665554442 58999999999999999988 5667 99999999999876655444332211
Q ss_pred cccCCCCC----CCceeccC-CCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEeccc
Q 017259 97 IRGFGPLL----PGHLKVDF-GDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQ 171 (374)
Q Consensus 97 ~~~~~~~~----~~~~~~~~-~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~ 171 (374)
.. ..+.. .......+ .|+++|+++++ ++++++++++++|++|.+. +++.+++|.++|++||++||+||+|
T Consensus 169 v~-~~~~~~~~~~~~~~~~~~~d~~~l~~~l~---~~~~~v~l~~p~nptG~~~-~~~~l~~i~~l~~~~~~~li~De~~ 243 (447)
T 3b46_A 169 VP-INPPKELDQRNTRGEEWTIDFEQFEKAIT---SKTKAVIINTPHNPIGKVF-TREELTTLGNICVKHNVVIISDEVY 243 (447)
T ss_dssp EE-EECCGGGGTSCBCSTTSEECHHHHHTTCC---TTEEEEEEESSCTTTCCCC-CHHHHHHHHHHHHHTTCEEEEECTT
T ss_pred Ee-CCCccccccccccccCcccCHHHHHHhhc---cCCeEEEEeCCCCCCCccc-CHHHHHHHHHHHHHcCcEEEEeccc
Confidence 11 00000 00000011 27899988886 5789999999999999876 7999999999999999999999999
Q ss_pred cCCcccccCcccc-----cCCCCCcEEEeccccc-CCccchhhhee-CHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHH
Q 017259 172 SGLARSGRMLASD-----WEEVRPDMVILGKALG-GGVIPVSAVLA-DKEVMLCIQPGEHGSTFGGNPLASAVAIASLDV 244 (374)
Q Consensus 172 ~~~~~~g~~~~~~-----~~~~~~d~~s~sK~~~-~G~~~~G~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~aa~~al~~ 244 (374)
+++.+.|....+. ..+....+.|+||.++ +|+ |+||+++ ++++++.+.......+++.+++++.++.++++.
T Consensus 244 ~~~~~~g~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~-riG~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~a~~~aL~~ 322 (447)
T 3b46_A 244 EHLYFTDSFTRIATLSPEIGQLTLTVGSAGKSFAATGW-RIGWVLSLNAELLSYAAKAHTRICFASPSPLQEACANSIND 322 (447)
T ss_dssp TTCBCSSCCCCGGGSCHHHHTTEEEEEEHHHHTTCTTS-CCEEEECSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHH
T ss_pred hhcccCCCCcCHHHcCCCCCCcEEEEecCchhcCCcch-hhEEEEeCCHHHHHHHHHHHhhccCCCChHHHHHHHHHHhC
Confidence 9876655322221 1234445669999999 799 9999999 999888876544455778899999999999887
Q ss_pred Hhhhc----HHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCC------------chhHHHHHHHHH-
Q 017259 245 IRDEK----LAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTAL------------PVSAYDICLKMK- 307 (374)
Q Consensus 245 ~~~~~----~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~------------~~~~~~~~~~l~- 307 (374)
...++ +.++++++++++.+.|+++ ++....+..+.++|+.++.... ..+..++++.|.
T Consensus 323 ~~~~~~~~~~~~~~~~~~~~l~~~L~~~-----g~~~~~~~~g~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~ 397 (447)
T 3b46_A 323 ALKIGYFEKMRQEYINKFKIFTSIFDEL-----GLPYTAPEGTYFVLVDFSKVKIPEDYPYPEEILNKGKDFRISHWLIN 397 (447)
T ss_dssp HHHHTHHHHHHHHHHHHHHHHHHHHHHH-----TCCEECCSBSSEEEEECTTCCCCTTCCCCGGGSSSCHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHC-----CCeecCCCeeEEEEEecccccCccccccccccccCCCHHHHHHHHHH
Confidence 53333 4555666666666666654 2222223446778888764200 015678999887
Q ss_pred HCCeEeccCC-----------CCEEEEecCCCCCHHHHHHHHHHHHH
Q 017259 308 ERGILAKPTH-----------DTIVRLTPPLSISSNELQEGSKALHD 343 (374)
Q Consensus 308 ~~Gi~v~~~~-----------~~~lRi~~~~~~~~e~i~~~~~~l~~ 343 (374)
++||.+.|+. .+++||+++ .+++++++++++|++
T Consensus 398 ~~gV~v~pg~~f~~~~~~~~~~~~iRls~~--~~~e~l~~~~~~l~~ 442 (447)
T 3b46_A 398 ELGVVAIPPTEFYIKEHEKAAENLLRFAVC--KDDAYLENAVERLKL 442 (447)
T ss_dssp HTCEECBCGGGGSCGGGGGGGTTEEEEECC--SCHHHHHHHHHHGGG
T ss_pred hCCEEEECchHhCCCCccCCCCCEEEEEEe--CCHHHHHHHHHHHHH
Confidence 5799998752 589999965 589999999998876
No 50
>3tqx_A 2-amino-3-ketobutyrate coenzyme A ligase; energy metabolism, transferase; HET: PLP; 2.30A {Coxiella burnetii}
Probab=99.97 E-value=6e-31 Score=247.53 Aligned_cols=308 Identities=18% Similarity=0.230 Sum_probs=232.7
Q ss_pred hHHHHHHHhccccCc-----CCCCCcHHHHHHHHhcccCCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEe
Q 017259 2 KALQEQAEKLTLSSR-----AFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSC 76 (374)
Q Consensus 2 ~a~~~~~~~~~~~~~-----~~~~~~~~~l~~~l~~~~~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~ 76 (374)
+++.+++.+..+..+ .+..+...+++++++++++.++.++++||++|+..+++.+ .++| |.|++.
T Consensus 64 ~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~~~~~~i~~~sGt~a~~~~l~~~-----~~~g-----d~v~~~ 133 (399)
T 3tqx_A 64 KTAQTVVEQYGFGMASVRFICGTQTIHKELEKDISEFLGTDDTILYSSCFDANGGLFETL-----LGPE-----DAIISD 133 (399)
T ss_dssp HHHHHHHHHHCSCCCSCCCCCCCBHHHHHHHHHHHHHHTCSEEEEESCHHHHHHTTHHHH-----CCTT-----CEEEEE
T ss_pred HHHHHHHHHhCCCCCCcCccccCchHHHHHHHHHHHHHCCCcEEEECchHHHHHHHHHHh-----cCCC-----CEEEEC
Confidence 456666665433211 1234568899999999999888888889999999998877 5667 999999
Q ss_pred ccCCCCcccccccccCCccccccCCCCCCCceeccCCCHHHHHHHHHhcCC---cEEEEEEccccCCCCcccCChhHHHH
Q 017259 77 CGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGD---QIAGFLFEPIQGEAGVIIPPDGYLKA 153 (374)
Q Consensus 77 ~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~---~~~~vi~~~~~~~~g~~~~~~~~l~~ 153 (374)
.|+|.+........+ ..+..+++.|+++++++++++.+ +++++++++++|++|.+.+ +++
T Consensus 134 ~~~~~~~~~~~~~~g-------------~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~~~~~~nptG~~~~----l~~ 196 (399)
T 3tqx_A 134 ELNHASIIDGIRLCK-------------AQRYRYKNNAMGDLEAKLKEADEKGARFKLIATDGVFSMDGIIAD----LKS 196 (399)
T ss_dssp TTCCHHHHHHHHSCC-------------SEEEEECTTCTTHHHHHHHHHHTTTCSSEEEEEESEETTTTEECC----HHH
T ss_pred CcccHHHHHHHHHcC-------------CceeEeCCCCHHHHHHHHHhhhccCCCceEEEEeCCCCCCCCcCC----HHH
Confidence 999765443322221 23445555688999999986433 7999999999999999998 999
Q ss_pred HHHHHHhcCCEEEEecccc-CC-cccccCcccccCCC--CCcEE--EecccccCCccchhhheeCHHHHhhcCCCCC--C
Q 017259 154 VRDLCSKYNILMIADEIQS-GL-ARSGRMLASDWEEV--RPDMV--ILGKALGGGVIPVSAVLADKEVMLCIQPGEH--G 225 (374)
Q Consensus 154 l~~l~~~~~i~li~Dea~~-~~-~~~g~~~~~~~~~~--~~d~~--s~sK~~~~G~~~~G~~~~~~~~~~~~~~~~~--~ 225 (374)
|.++|++||++||+||+|+ ++ +..+.. ....++. .+|++ |+||+++ |. ++||+++++++.+.+..... .
T Consensus 197 i~~l~~~~~~~li~De~~~~~~~~~~~~~-~~~~~~~~~~~di~~~s~sK~~~-g~-~gG~~~~~~~~~~~~~~~~~~~~ 273 (399)
T 3tqx_A 197 ICDLADKYNALVMVDDSHAVGFIGENGRG-TPEYCGVADRVDILTGTLGKALG-GA-SGGYTSGHKEIIEWLRNRSRPYL 273 (399)
T ss_dssp HHHHHHHTTCEEEEECTTTTTTSSTTSCC-HHHHHTCTTCCSEEEEESSSSSC-SS-CCEEEEECHHHHHHHHHHCHHHH
T ss_pred HHHHHHHcCCEEEEECCccccccCCCCCc-hHHhhCCCCCCcEEEecchHhcc-cC-ceEEEEcCHHHHHHHHHhCccee
Confidence 9999999999999999996 43 333322 2333343 56777 8999998 66 78999999998888765322 2
Q ss_pred CCCCCCHHHHHHHHHHHHHHh--hhcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCchhHHHHH
Q 017259 226 STFGGNPLASAVAIASLDVIR--DEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDIC 303 (374)
Q Consensus 226 ~~~~~~~~~~~aa~~al~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 303 (374)
.+.+.+++.++++.++++... .++..++++++.+++.+.|+++. ++ . .++.+.++++.++... +..+++
T Consensus 274 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~g--~~-~---~~~~~~~~~~~~~~~~---~~~~~~ 344 (399)
T 3tqx_A 274 FSNTVAPVIVATSLKVLELLKTEGPQLRKQLQENSRYFRAGMEKLG--FQ-L---VPGNHPIIPVMLGDAQ---LATNMA 344 (399)
T ss_dssp SSCCCCHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHT--CC-B---CCCSSSEEEEEEECHH---HHHHHH
T ss_pred ccCCCcHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHcC--CC-c---CCCCCCEEEEEeCCHH---HHHHHH
Confidence 244678888889999988762 24678888888999988888773 21 2 2456788888886542 578999
Q ss_pred HHHHHCCeEeccC-------CCCEEEEecCCCCCHHHHHHHHHHHHHHHhccC
Q 017259 304 LKMKERGILAKPT-------HDTIVRLTPPLSISSNELQEGSKALHDVLELDL 349 (374)
Q Consensus 304 ~~l~~~Gi~v~~~-------~~~~lRi~~~~~~~~e~i~~~~~~l~~~~~~~~ 349 (374)
+.|.++||.+.+. +.+++|++++...+++++++++++|+++++ ++
T Consensus 345 ~~l~~~gi~v~~~~~~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~-~~ 396 (399)
T 3tqx_A 345 DHLLQEGIYVVGFSYPVVPMGKARIRVQMSAVHTQQQLDRAIEAFGQVGK-KL 396 (399)
T ss_dssp HHHHHTTEECCEECTTTSCTTCEEEEEECCTTCCHHHHHHHHHHHHHHHH-HT
T ss_pred HHHHHCCCEEeeeCCCCCCCCCceEEEEeecCCCHHHHHHHHHHHHHHHH-Hh
Confidence 9999999999853 346999999888999999999999999998 65
No 51
>3nra_A Aspartate aminotransferase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: LLP; 2.15A {Rhodobacter sphaeroides}
Probab=99.97 E-value=5.9e-32 Score=255.18 Aligned_cols=320 Identities=14% Similarity=0.142 Sum_probs=219.2
Q ss_pred hHHHHHHHhc---cccCcCCCCCcHHHHHHHHhcccCC-----CeEEecCChHHHHHHHHHHHHHcccccccCCCCccEE
Q 017259 2 KALQEQAEKL---TLSSRAFYNDKFPVFAERLTSMFGY-----DMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAII 73 (374)
Q Consensus 2 ~a~~~~~~~~---~~~~~~~~~~~~~~l~~~l~~~~~~-----~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~v 73 (374)
+|+.+++.+. .+....+..++++++++++++++|. +++++++||++|++.+++++ ..+| |+|
T Consensus 60 ~a~~~~~~~~~~~~y~~~~g~~~l~~~l~~~l~~~~g~~~~~~~~i~~~~g~~~a~~~~~~~l-----~~~g-----d~v 129 (407)
T 3nra_A 60 DLFSAGVQSGGVQAYTEYRGDLGIRDLLAPRLAAFTGAPVDARDGLIITPGTQGALFLAVAAT-----VARG-----DKV 129 (407)
T ss_dssp HHHHHHHHHTHHHHSCCTTCCHHHHHHHHHHHHHHHTSCCCTTTSEEEESHHHHHHHHHHHTT-----CCTT-----CEE
T ss_pred HHHHHHHhcCCCCCcCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcEEEeCCcHHHHHHHHHHh-----CCCC-----CEE
Confidence 4666666542 1222334456778899999887765 79999999999999999877 5667 999
Q ss_pred EEeccCCCCcccccccccCCccccccCCCCCCCceeccC-CCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHH
Q 017259 74 VSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDF-GDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLK 152 (374)
Q Consensus 74 i~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~ 152 (374)
++..|+|++....+...+....... ..+. ......+ .|++++++++++ +++++++++++|++|.+. +.+.++
T Consensus 130 l~~~~~~~~~~~~~~~~g~~~~~~~-~~~~--~~~~~~~~~d~~~l~~~l~~---~~~~v~~~~p~nptG~~~-~~~~l~ 202 (407)
T 3nra_A 130 AIVQPDYFANRKLVEFFEGEMVPVQ-LDYV--SADETRAGLDLTGLEEAFKA---GARVFLFSNPNNPAGVVY-SAEEIG 202 (407)
T ss_dssp EEEESCCTHHHHHHHHTTCEEEEEE-BCCC--SSCCSSCCBCHHHHHHHHHT---TCCEEEEESSCTTTCCCC-CHHHHH
T ss_pred EEcCCcccchHHHHHHcCCEEEEee-cccc--cccCcCCCcCHHHHHHHHhh---CCcEEEEcCCCCCCCccc-CHHHHH
Confidence 9999999876655544432211110 0000 0000000 179999999984 677888888888899777 799999
Q ss_pred HHHHHHHhcCCEEEEeccccCCcccccCc-ccccCC-----CCCcEEEeccccc-CCccchhhheeCHHHHhhcCCCCCC
Q 017259 153 AVRDLCSKYNILMIADEIQSGLARSGRML-ASDWEE-----VRPDMVILGKALG-GGVIPVSAVLADKEVMLCIQPGEHG 225 (374)
Q Consensus 153 ~l~~l~~~~~i~li~Dea~~~~~~~g~~~-~~~~~~-----~~~d~~s~sK~~~-~G~~~~G~~~~~~~~~~~~~~~~~~ 225 (374)
+|.++|++||+++|+||+|+++.+.|..+ .....+ ....+.|+||.++ +|+ |+||+++++++.+.+......
T Consensus 203 ~i~~~~~~~~~~li~Dea~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~-r~G~~~~~~~~~~~l~~~~~~ 281 (407)
T 3nra_A 203 QIAALAARYGATVIADQLYSRLRYAGASYTHLRAEAAVDAENVVTIMGPSKTESLSGY-RLGVAFGSRAIIARMEKLQAI 281 (407)
T ss_dssp HHHHHHHHHTCEEEEECTTTTSBCTTCCCCCGGGCTTSCGGGEEEEECSSSTTCCGGG-CCEEEEECHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCEEEEEccccccccCCCCCCChhhcCcccCCcEEEEeCcccccCCCee-eEEEEEcCHHHHHHHHHHHhh
Confidence 99999999999999999999876655432 222221 1223558999999 788 999999999988888765455
Q ss_pred CCCCCCHHHHHHHHHHHHHHhh--hcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEecc-CCCchhHHHH
Q 017259 226 STFGGNPLASAVAIASLDVIRD--EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDK-TALPVSAYDI 302 (374)
Q Consensus 226 ~~~~~~~~~~~aa~~al~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~~ 302 (374)
.+++.++++++++.++++.... ++..++++++.+++.+.|+ .+|++.......+.++|+.++. .. +..++
T Consensus 282 ~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~----~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~ 354 (407)
T 3nra_A 282 VSLRAAGYSQAVLRGWFDEAPGWMEDRIARHQAIRDELLHVLR----GCEGVFARTPQAGSYLFPRLPKLAV---APAEF 354 (407)
T ss_dssp HTSSSCHHHHGGGGGTTCCCTTHHHHHHHHHHHHHHHHHHHHH----TSTTCBCCCCSBSSEECCBCCCBSS---CHHHH
T ss_pred hccCCChHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHh----cCCCceeccCCeeEEEEEeCCCCCC---CHHHH
Confidence 5677788888777766652111 1233444444444444443 3332222122335677776654 22 67889
Q ss_pred HHHHHH-CCeEeccC------CCCEEEEecCCCCCHHHHHHHHHHHHHHHhccC
Q 017259 303 CLKMKE-RGILAKPT------HDTIVRLTPPLSISSNELQEGSKALHDVLELDL 349 (374)
Q Consensus 303 ~~~l~~-~Gi~v~~~------~~~~lRi~~~~~~~~e~i~~~~~~l~~~~~~~~ 349 (374)
.+.|++ +||.++++ ..+++||+++ .+++++++++++|+++++ ++
T Consensus 355 ~~~l~~~~gi~v~~g~~~~~~~~~~iRis~~--~~~~~i~~~~~~l~~~~~-~~ 405 (407)
T 3nra_A 355 VKILRLQAGVVVTPGTEFSPHTADSVRLNFS--QDHEAAVAAARRIVTLVE-RY 405 (407)
T ss_dssp HHHHHHHHCEECEEGGGTCTTCTTBEEEECC--SCHHHHHHHHHHHHHHHH-HH
T ss_pred HHHHHHhCCEEEeCchhhCCCCCCEEEEEeC--CCHHHHHHHHHHHHHHHH-Hh
Confidence 999976 59999874 3689999976 499999999999999998 54
No 52
>3fdb_A Beta C-S lyase, putative PLP-dependent beta-cystathionase; PLP-dependent transferase-like fold, structural genomics; HET: LLP; 1.99A {Corynebacterium diphtheriae}
Probab=99.97 E-value=4.5e-31 Score=246.59 Aligned_cols=310 Identities=14% Similarity=0.109 Sum_probs=218.8
Q ss_pred hHHHHHHHhccc-cCcCCCCCcHHHHHHHHhccc----CCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEe
Q 017259 2 KALQEQAEKLTL-SSRAFYNDKFPVFAERLTSMF----GYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSC 76 (374)
Q Consensus 2 ~a~~~~~~~~~~-~~~~~~~~~~~~l~~~l~~~~----~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~ 76 (374)
+|+.+++.+..+ +.+.+ .++++.+++.+.+.+ ..+++++|+|+++|++.+++.+ .++| |+|++.
T Consensus 43 ~a~~~~~~~~~~~y~~~~-~~lr~~la~~~~~~~~~~~~~~~i~~t~g~~~a~~~~~~~~-----~~~g-----d~vl~~ 111 (377)
T 3fdb_A 43 QAITDAVQREAFGYQPDG-SLLSQATAEFYADRYGYQARPEWIFPIPDVVRGLYIAIDHF-----TPAQ-----SKVIVP 111 (377)
T ss_dssp HHHHHHHHTTCCSSCCSS-CCHHHHHHHHHHHHHCCCCCGGGEEEESCHHHHHHHHHHHH-----SCTT-----CCEEEE
T ss_pred HHHHHHHHcCCCCCCCCC-HHHHHHHHHHHHHHhCCCCCHHHEEEeCChHHHHHHHHHHh-----cCCC-----CEEEEc
Confidence 466666665322 22222 556666777666543 3568999999999999999988 5667 999999
Q ss_pred ccCCCCcccccccccCCccccccCCCCCCCceeccC---CCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHH
Q 017259 77 CGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDF---GDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKA 153 (374)
Q Consensus 77 ~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~ 153 (374)
.|+|++....+...+.. +..++. .|++++++++++ +++++++++++|++|.+. +.+.+++
T Consensus 112 ~~~~~~~~~~~~~~g~~-------------~~~~~~~~~~d~~~l~~~l~~---~~~~v~i~~p~nptG~~~-~~~~l~~ 174 (377)
T 3fdb_A 112 TPAYPPFFHLLSATQRE-------------GIFIDATGGINLHDVEKGFQA---GARSILLCNPYNPLGMVF-APEWLNE 174 (377)
T ss_dssp ESCCTHHHHHHHHHTCC-------------EEEEECTTSCCHHHHHHHHHT---TCCEEEEESSBTTTTBCC-CHHHHHH
T ss_pred CCCcHhHHHHHHHcCCE-------------EEEccCCCCCCHHHHHHHhcc---CCCEEEEeCCCCCCCCCC-CHHHHHH
Confidence 99999876655544322 222232 289999999984 577888888889999877 7888999
Q ss_pred HHHHHHhcCCEEEEeccccCCcccc-cC-ccccc---CCCCCcEEEeccccc-CCccchhhhee-CHHHHhhcCCCCCCC
Q 017259 154 VRDLCSKYNILMIADEIQSGLARSG-RM-LASDW---EEVRPDMVILGKALG-GGVIPVSAVLA-DKEVMLCIQPGEHGS 226 (374)
Q Consensus 154 l~~l~~~~~i~li~Dea~~~~~~~g-~~-~~~~~---~~~~~d~~s~sK~~~-~G~~~~G~~~~-~~~~~~~~~~~~~~~ 226 (374)
|.++|++||+++|+||+|+++.+.| .. ..+.. .+....+.|+||.++ +|+ |+||++. ++++.+.+.......
T Consensus 175 l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~-r~G~~~~~~~~~~~~~~~~~~~~ 253 (377)
T 3fdb_A 175 LCDLAHRYDARVLVDEIHAPLVFDGQHTVAAGVSDTAASVCITITAPSKAWNIAGL-KCAQIIFSNPSDAEHWQQLSPVI 253 (377)
T ss_dssp HHHHHHHTTCEEEEECTTGGGBSSSCCCCGGGSCHHHHHHEEEEECSTTTTTCGGG-CCEEEECCSHHHHHHHHHSCHHH
T ss_pred HHHHHHHcCCEEEEEcccchhhcCCCCCcccHHHccCCCcEEEEEeChHhccCcch-hheEEEeCCHHHHHHHHHHHHhh
Confidence 9999999999999999999876665 21 11111 111234568999997 788 9998765 788888877654555
Q ss_pred CCCCCHHHHHHHHHHHHHHhh--hcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCchhHHHHHH
Q 017259 227 TFGGNPLASAVAIASLDVIRD--EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICL 304 (374)
Q Consensus 227 ~~~~~~~~~~aa~~al~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 304 (374)
+++.++++++++.++++...+ ++..++++++.+++.+.|++. +|++.......+.+.|+.++... ...++++
T Consensus 254 ~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~---~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~ 327 (377)
T 3fdb_A 254 KDGASTLGLIAAEAAYRYGTDFLNQEVAYLKNNHDFLLHEIPKR---IPGAKITPMQATYLMWIDFRDTT---IEGSPSE 327 (377)
T ss_dssp HCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHH---STTCEECCCSBCSEEEEECTTSC---CCSCHHH
T ss_pred cCCCCHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhh---CCCceEecCCeeEEEEEECcccC---CCHHHHH
Confidence 678899999999988875322 244555666666666666553 33222222223444577776532 2256788
Q ss_pred HHHHC-CeEeccCC------CCEEEEecCCCCCHHHHHHHHHHHHHHHhccC
Q 017259 305 KMKER-GILAKPTH------DTIVRLTPPLSISSNELQEGSKALHDVLELDL 349 (374)
Q Consensus 305 ~l~~~-Gi~v~~~~------~~~lRi~~~~~~~~e~i~~~~~~l~~~~~~~~ 349 (374)
.|+++ ||.++++. .+++||+++ .+++++++++++|+++++ ++
T Consensus 328 ~l~~~~gi~v~~g~~~~~~~~~~~Ris~~--~~~e~i~~~l~~l~~~l~-~~ 376 (377)
T 3fdb_A 328 FFIEKAKVAMNDGAWFGEDGTGFCRLNFA--TSREVLEEAIDRMAKAVS-HH 376 (377)
T ss_dssp HHHHHHCEECEEGGGGCGGGTTEEEEECC--SCHHHHHHHHHHHHHHHT-TC
T ss_pred HHHHhCCEEecCChhccCCCCCEEEEEeC--CCHHHHHHHHHHHHHHHh-hc
Confidence 88876 99998753 589999966 589999999999999997 54
No 53
>1gd9_A Aspartate aminotransferase; pyridoxal enzyme, temperature dependence O substrate recognition; HET: PLP; 1.80A {Pyrococcus horikoshii} SCOP: c.67.1.1 PDB: 1gde_A* 1dju_A*
Probab=99.97 E-value=6.6e-31 Score=246.64 Aligned_cols=295 Identities=13% Similarity=0.149 Sum_probs=210.4
Q ss_pred cHHHHHHHHhccc----C----CCe-EEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccC
Q 017259 22 KFPVFAERLTSMF----G----YDM-VLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSC 92 (374)
Q Consensus 22 ~~~~l~~~l~~~~----~----~~~-~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~ 92 (374)
...++++.+++++ | .++ +++|+||++|++.+++++ ..+| |+|++.+|+||+....+...+.
T Consensus 64 g~~~l~~~la~~~~~~~g~~~~~~~~v~~~~g~~~a~~~~~~~~-----~~~g-----d~vl~~~~~~~~~~~~~~~~g~ 133 (389)
T 1gd9_A 64 GLLELREAIAEKLKKQNGIEADPKTEIMVLLGANQAFLMGLSAF-----LKDG-----EEVLIPTPAFVSYAPAVILAGG 133 (389)
T ss_dssp CCHHHHHHHHHHHHHHHCCCCCTTTSEEEESSTTHHHHHHHTTT-----CCTT-----CEEEEEESCCTTHHHHHHHHTC
T ss_pred CcHHHHHHHHHHHHHHhCCCCCCCCeEEEcCChHHHHHHHHHHh-----CCCC-----CEEEEcCCCchhHHHHHHHCCC
Confidence 3455555555544 5 468 999999999999999877 4567 9999999999997655443332
Q ss_pred CccccccCCCCCCCceeccC-CCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEeccc
Q 017259 93 DNEAIRGFGPLLPGHLKVDF-GDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQ 171 (374)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~-~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~ 171 (374)
..... +.... -.+ -|+++++++++ ++++++++++++|++|.+. +.+.+++|.++|++||++||+||+|
T Consensus 134 ~~~~v----~~~~~---~~~~~d~~~l~~~l~---~~~~~v~~~~~~nptG~~~-~~~~l~~l~~~~~~~~~~li~De~~ 202 (389)
T 1gd9_A 134 KPVEV----PTYEE---DEFRLNVDELKKYVT---DKTRALIINSPCNPTGAVL-TKKDLEEIADFVVEHDLIVISDEVY 202 (389)
T ss_dssp EEEEE----ECCGG---GTTCCCHHHHHHHCC---TTEEEEEEESSCTTTCCCC-CHHHHHHHHHHHHHTTCEEEEECTT
T ss_pred EEEEe----ccCCc---cCCCCCHHHHHHhcC---cCceEEEEECCCCCCCcCC-CHHHHHHHHHHHHHcCCEEEEehhh
Confidence 21111 10000 011 17899998886 4688888888888899776 7899999999999999999999999
Q ss_pred cCCccccc-CcccccC-C-CCCc--EEEeccccc-CCccchhhheeCHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHH
Q 017259 172 SGLARSGR-MLASDWE-E-VRPD--MVILGKALG-GGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVI 245 (374)
Q Consensus 172 ~~~~~~g~-~~~~~~~-~-~~~d--~~s~sK~~~-~G~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~al~~~ 245 (374)
+++.+.|. ......+ + ...+ +.|+||.++ +|+ |+||+++++++.+.+.......+++.+++++.++.++++..
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~-r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~ 281 (389)
T 1gd9_A 203 EHFIYDDARHYSIASLDGMFERTITVNGFSKTFAMTGW-RLGFVAAPSWIIERMVKFQMYNATCPVTFIQYAAAKALKDE 281 (389)
T ss_dssp TTCBCTTCCCCCGGGSTTCGGGEEEEEESTTTTTCGGG-CCEEEECCHHHHHHHHHHHTTTTCSCCHHHHHHHHHHHTCH
T ss_pred hhcccCCCCCCCHhhccCCCCCEEEEecChhhcCCccc-ceEEEEECHHHHHHHHHHHhhhccCCCHHHHHHHHHHHhCC
Confidence 98766554 2222222 2 1224 448999998 788 99999999998888876555667788999999988888754
Q ss_pred hh----hcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEecc-CCCchhHHHHHHHHH-HCCeEeccCC--
Q 017259 246 RD----EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDK-TALPVSAYDICLKMK-ERGILAKPTH-- 317 (374)
Q Consensus 246 ~~----~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~~l~-~~Gi~v~~~~-- 317 (374)
.. +++.++++++.+++.+.|++. .+. .. .+..+.++|+.++. .. +..++.+.|. ++||.+.++.
T Consensus 282 ~~~~~~~~~~~~~~~~~~~l~~~L~~~--g~~-~~--~~~~~~~~~~~~~~~~~---~~~~~~~~l~~~~gi~v~~g~~~ 353 (389)
T 1gd9_A 282 RSWKAVEEMRKEYDRRRKLVWKRLNEM--GLP-TV--KPKGAFYIFPRIRDTGL---TSKKFSELMLKEARVAVVPGSAF 353 (389)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHT--TCC-CC--CCCBTTEECCBCGGGTC---CHHHHHHHHHHHTCEECEEGGGG
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHc--CCe-ec--CCCeeeEEEEeccCCCC---CHHHHHHHHHHhCCEEEeCchhh
Confidence 33 234455566666666666554 121 11 12235566766653 22 5788999998 8999998752
Q ss_pred ----CCEEEEecCCCCCHHHHHHHHHHHHHHHhccC
Q 017259 318 ----DTIVRLTPPLSISSNELQEGSKALHDVLELDL 349 (374)
Q Consensus 318 ----~~~lRi~~~~~~~~e~i~~~~~~l~~~~~~~~ 349 (374)
.+++||+++ .+++++++++++|+++++ +.
T Consensus 354 ~~~~~~~iRi~~~--~~~~~i~~~l~~l~~~~~-~~ 386 (389)
T 1gd9_A 354 GKAGEGYVRISYA--TAYEKLEEAMDRMERVLK-ER 386 (389)
T ss_dssp CGGGTTBEEEECC--SCHHHHHHHHHHHHHHHH-HT
T ss_pred CCCCCCeEEEEec--CCHHHHHHHHHHHHHHHH-hc
Confidence 579999966 489999999999999987 54
No 54
>3ffh_A Histidinol-phosphate aminotransferase; APC88260, listeria in CLIP11262, structural genomics, PSI-2; 2.31A {Listeria innocua} SCOP: c.67.1.0
Probab=99.97 E-value=3.6e-30 Score=239.37 Aligned_cols=298 Identities=12% Similarity=0.132 Sum_probs=210.1
Q ss_pred HHHHHHHhccccCcCCCCCcHHHHHHHHhcccCC--CeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCC
Q 017259 3 ALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGY--DMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCF 80 (374)
Q Consensus 3 a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~--~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~y 80 (374)
.+.+++.+.......|+.+...+++++++++++. +++++++|++++++.+++.+ .++| |+|++..|+|
T Consensus 49 ~v~~a~~~~~~~~~~y~~~~~~~lr~~la~~~~~~~~~v~~~~g~t~a~~~~~~~~-----~~~g-----d~vl~~~~~~ 118 (363)
T 3ffh_A 49 KVAAIQANSSVETEIYPDGWASSLRKEVADFYQLEEEELIFTAGVDELIELLTRVL-----LDTT-----TNTVMATPTF 118 (363)
T ss_dssp HHHHHHHTCBSCCCBC----CHHHHHHHHHHHTCCGGGEEEESSHHHHHHHHHHHH-----CSTT-----CEEEEEESSC
T ss_pred HHHHHHHHHHHHhhcCCCcchHHHHHHHHHHhCCChhhEEEeCCHHHHHHHHHHHH-----ccCC-----CEEEEcCCCh
Confidence 3455555433333345566778999999998864 68999999999999999988 5667 9999999999
Q ss_pred CCcccccccccCCccccccCCCCCCCceeccCC-----CHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHH
Q 017259 81 HGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFG-----DITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVR 155 (374)
Q Consensus 81 hg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~ 155 (374)
++....+...+.. +..++.+ |+++++++++ ++++++++++++|++|.+.+ .+.+.+|+
T Consensus 119 ~~~~~~~~~~g~~-------------~~~v~~~~~~~~d~~~l~~~i~---~~~~~v~~~~p~nptG~~~~-~~~l~~l~ 181 (363)
T 3ffh_A 119 VQYRQNALIEGAE-------------VREIPLLQDGEHDLEGMLNAID---EKTTIVWICNPNNPTGNYIE-LADIQAFL 181 (363)
T ss_dssp HHHHHHHHHHTCE-------------EEEEECCTTSCCCHHHHHHHCC---TTEEEEEEESSCTTTCCCCC-HHHHHHHH
T ss_pred HHHHHHHHHcCCE-------------EEEecCCCCCCcCHHHHHHhcc---cCCCEEEEeCCCCCcCCCcC-HHHHHHHH
Confidence 8866555444322 2222222 8999999886 57999999999999998885 44455555
Q ss_pred HHHHhcCCEEEEeccccCCcccccCcccc-cCCCCCc---EEEeccccc-CCccchhhheeCHHHHhhcCCCCCCCCCCC
Q 017259 156 DLCSKYNILMIADEIQSGLARSGRMLASD-WEEVRPD---MVILGKALG-GGVIPVSAVLADKEVMLCIQPGEHGSTFGG 230 (374)
Q Consensus 156 ~l~~~~~i~li~Dea~~~~~~~g~~~~~~-~~~~~~d---~~s~sK~~~-~G~~~~G~~~~~~~~~~~~~~~~~~~~~~~ 230 (374)
+.|++ |+++|+||+|+++.+ +...... ......+ +.|+||.++ +|+ |+||+++++++.+.+.... .+++.
T Consensus 182 ~~~~~-~~~li~De~~~~~~~-~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~-r~G~~~~~~~~~~~l~~~~--~~~~~ 256 (363)
T 3ffh_A 182 DRVPS-DVLVVLDEAYIEYVT-PQPEKHEKLVRTYKNLIITRTFSKIYGLASA-RVGYGIADKEIIRQLNIVR--PPFNT 256 (363)
T ss_dssp TTSCT-TSEEEEECTTGGGCS-SCCCCCGGGGGTCTTEEEEEESSSTTCCSSC-CCEEEEECHHHHHHHHHTC--CSCCC
T ss_pred HhCCC-CcEEEEeCchHhhcC-ccccCHHHHhhcCCCEEEEeechhhhcCchh-ceeeeecCHHHHHHHHHhC--CCCCC
Confidence 44444 999999999998765 4332222 1122222 458999998 798 9999999999988887543 36788
Q ss_pred CHHHHHHHHHHHHHHhh-hcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCchhHHHHHHHHHHC
Q 017259 231 NPLASAVAIASLDVIRD-EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKER 309 (374)
Q Consensus 231 ~~~~~~aa~~al~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~ 309 (374)
+.++++++.++++.... ++..++++++.+++.+.|++ ++++ ...++.+.++++.++. +..++.+.|.++
T Consensus 257 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~----~~g~-~~~~~~~~~~~~~~~~-----~~~~~~~~l~~~ 326 (363)
T 3ffh_A 257 TSIGQKLAIEAIKDQAFIGECRTSNANGIKQYEAFAKR----FEKV-KLYPANGNFVLIDLGI-----EAGTIFSYLEKN 326 (363)
T ss_dssp BHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHH----CTTC-EECCCCSSEEEEECSS-----CHHHHHHHHHHT
T ss_pred CHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhh----CCCc-eECCCCCeEEEEECCC-----CHHHHHHHHHHC
Confidence 99999999988863211 13344444555555555544 2222 2234567888887764 478899999999
Q ss_pred CeEeccCC----CCEEEEecCCCCCHHHHHHHHHHHHHHH
Q 017259 310 GILAKPTH----DTIVRLTPPLSISSNELQEGSKALHDVL 345 (374)
Q Consensus 310 Gi~v~~~~----~~~lRi~~~~~~~~e~i~~~~~~l~~~~ 345 (374)
||.++++. ++++||+++ +++|+++++++|++++
T Consensus 327 gi~v~~g~~~~~~~~iRis~~---~~~~i~~~~~~l~~~l 363 (363)
T 3ffh_A 327 GYITRSGAALGFPTAVRITIG---KEEDNSAVIALLEKLL 363 (363)
T ss_dssp TEECEETTTTTCTTEEEEECC---CHHHHHHHHHHHHHHC
T ss_pred CeEEEeCccCCCCCeEEEECC---CHHHHHHHHHHHHHhC
Confidence 99999864 689999955 8999999999998763
No 55
>2r2n_A Kynurenine/alpha-aminoadipate aminotransferase mitochondrial; alpha & beta protein, PLP-dependent transferase, aminotransf mitochondrion; HET: PMP KYN; 1.95A {Homo sapiens} PDB: 2qlr_A* 3dc1_A* 3ue8_A* 2vgz_A* 2xh1_A*
Probab=99.97 E-value=1.8e-30 Score=246.57 Aligned_cols=306 Identities=11% Similarity=0.072 Sum_probs=214.3
Q ss_pred ccCcCCCCCcHHHHHHHHhcccCC-----------CeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCC
Q 017259 13 LSSRAFYNDKFPVFAERLTSMFGY-----------DMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFH 81 (374)
Q Consensus 13 ~~~~~~~~~~~~~l~~~l~~~~~~-----------~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yh 81 (374)
|....+..++++.+++++.+..|. +++++|+|+++|++.+++++ .++| |+|++.+|+|+
T Consensus 74 Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l-----~~~g-----d~Vlv~~p~y~ 143 (425)
T 2r2n_A 74 YSPSAGIPELLSWLKQLQIKLHNPPTIHYPPSQGQMDLCVTSGSQQGLCKVFEMI-----INPG-----DNVLLDEPAYS 143 (425)
T ss_dssp CCCTTCCHHHHHHHHHHHHHHHCCTTTTSCGGGTCEEEEEESSHHHHHHHHHHHH-----CCTT-----CEEEEESSCCH
T ss_pred CCCCCCCHHHHHHHHHHHHHhcCCCCccccccCCcCcEEEeCcHHHHHHHHHHHh-----CCCC-----CEEEEeCCCcH
Confidence 333345556677788877765542 48999999999999999988 5667 99999999998
Q ss_pred CcccccccccCCccccccCCCCCCCceeccCCCHHHHHHHHHhcC---------CcEEEEEEc-cccCCCCcccCChhHH
Q 017259 82 GRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESG---------DQIAGFLFE-PIQGEAGVIIPPDGYL 151 (374)
Q Consensus 82 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~---------~~~~~vi~~-~~~~~~g~~~~~~~~l 151 (374)
+....+...+...... +...+ -.|+++|++++++++ +++++++++ +++|++|.+. +.+.+
T Consensus 144 ~~~~~~~~~g~~~~~v----~~~~~-----~~d~~~l~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~NPtG~~~-~~~~l 213 (425)
T 2r2n_A 144 GTLQSLHPLGCNIINV----ASDES-----GIVPDSLRDILSRWKPEDAKNPQKNTPKFLYTVPNGNNPTGNSL-TSERK 213 (425)
T ss_dssp HHHHHHGGGTCEEEEE----CEETT-----EECHHHHHHHHTTSCSTTSSSTTSCCCSEEEECCSSCTTTCCCC-CHHHH
T ss_pred HHHHHHHHcCCEEEEe----CcCCC-----CCCHHHHHHHHHhhhccccccccCCCceEEEECCCCcCCCCCcC-CHHHH
Confidence 8765554433211110 10000 027899999997432 457788775 5788888776 79999
Q ss_pred HHHHHHHHhcCCEEEEeccccCCcccccC-cccccC---CCCCcEEEecccccCCccchhhheeCHHHHhhcCCCCCCCC
Q 017259 152 KAVRDLCSKYNILMIADEIQSGLARSGRM-LASDWE---EVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGST 227 (374)
Q Consensus 152 ~~l~~l~~~~~i~li~Dea~~~~~~~g~~-~~~~~~---~~~~d~~s~sK~~~~G~~~~G~~~~~~~~~~~~~~~~~~~~ 227 (374)
++|.++|++||++||+||+|+++.+.|.. .....+ +....+.||||.+++|+ |+||+++++++++.+.......+
T Consensus 214 ~~l~~~a~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~i~~~s~SK~~~~Gl-RiG~~~~~~~l~~~l~~~~~~~~ 292 (425)
T 2r2n_A 214 KEIYELARKYDFLIIEDDPYYFLQFNKFRVPTFLSMDVDGRVIRADSFSKIISSGL-RIGFLTGPKPLIERVILHIQVST 292 (425)
T ss_dssp HHHHHHHHHTTCEEEEECTTGGGBSSSSCCCCTGGGCTTSCEEEEEESTTTTCSTT-CCEEEEEEHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHcCCEEEEECCcccccCCCCCCCCccccCCCCCEEEEccchhhccCcc-ceEEEecCHHHHHHHHHHHHHhc
Confidence 99999999999999999999977555532 111112 22233459999999999 99999999998888876545567
Q ss_pred CCCCHHHHHHHHHHHHHHhhh---c----HHHHHHHHHHHHHHHHHHHHHhCCCcee-eEEEEeeeEEEEeccCCCchhH
Q 017259 228 FGGNPLASAVAIASLDVIRDE---K----LAERSAHLGEELRQHLFKIQQQFPNYVK-EVRGRGLFNAVEFDKTALPVSA 299 (374)
Q Consensus 228 ~~~~~~~~~aa~~al~~~~~~---~----~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~ 299 (374)
++.+.+++.++.++++.+.++ + ..++++++++++.+.|++. +|+... ..+..|.++|+.++... +.
T Consensus 293 ~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~---~~~~~~~~~p~~g~~~~~~~~~~~---~~ 366 (425)
T 2r2n_A 293 LHPSTFNQLMISQLLHEWGEEGFMAHVDRVIDFYSNQKDAILAAADKW---LTGLAEWHVPAAGMFLWIKVKGIN---DV 366 (425)
T ss_dssp CSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---CSSSEEECCCSBSSEEEEEETTCS---CC
T ss_pred CCCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHH---CCCCeEEeCCCceEEEEEEeCCCC---CH
Confidence 788999999999988864322 2 2333344444444444432 333322 22345788888887532 33
Q ss_pred HH-HHHHHHHCCeEeccCC---------CCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 017259 300 YD-ICLKMKERGILAKPTH---------DTIVRLTPPLSISSNELQEGSKALHDVLE 346 (374)
Q Consensus 300 ~~-~~~~l~~~Gi~v~~~~---------~~~lRi~~~~~~~~e~i~~~~~~l~~~~~ 346 (374)
.+ +.+.|.++||.+.++. .+++||+++. .+++++++++++|+++++
T Consensus 367 ~~~~~~~l~~~gv~v~pg~~f~~~~~~~~~~iRis~~~-~~~~~i~~~~~~l~~~l~ 422 (425)
T 2r2n_A 367 KELIEEKAVKMGVLMLPGNAFYVDSSAPSPYLRASFSS-ASPEQMDVAFQVLAQLIK 422 (425)
T ss_dssp HHHHHTHHHHTTEECEEGGGGSSSTTSCCCEEEEECSS-CCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCcEEechhhhcCCCCCCCCEEEEEeCC-CCHHHHHHHHHHHHHHHH
Confidence 45 6788899999998742 4799999763 699999999999999987
No 56
>3kax_A Aminotransferase, classes I and II; PLP, C-S lyase, transf structural genomics, center for structural genomics of INFE diseases, csgid; HET: LLP MSE PLP; 1.70A {Bacillus anthracis str} PDB: 3t32_A*
Probab=99.97 E-value=1.1e-30 Score=244.40 Aligned_cols=316 Identities=12% Similarity=0.105 Sum_probs=219.8
Q ss_pred hHHHHHHHhccccCcCCCCCcHHHHHHHHhcccC----CCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEec
Q 017259 2 KALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFG----YDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCC 77 (374)
Q Consensus 2 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~----~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~ 77 (374)
+|+.+++.+..+.++....+.++++++.+++.+| .+++++|+|+++|++.+++.+ .++| |+|++..
T Consensus 44 ~a~~~~~~~~~~~y~~~~~~~~~~l~~~l~~~~g~~~~~~~v~~~~g~~~a~~~~~~~l-----~~~g-----d~vl~~~ 113 (383)
T 3kax_A 44 TALKKRIEHPIFGYTLPPENIGDIICNWTKKQYNWDIQKEWIVFSAGIVPALSTSIQAF-----TKEN-----ESVLVQP 113 (383)
T ss_dssp HHHHHHHHSCCCCCCCCCTTHHHHHHHHHHHHHCCCCCGGGEEEESCHHHHHHHHHHHH-----CCTT-----CEEEECS
T ss_pred HHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHhCCCCChhhEEEcCCHHHHHHHHHHHh-----CCCC-----CEEEEcC
Confidence 4566666653333332357788889999988765 568999999999999999988 5667 9999999
Q ss_pred cCCCCcccccccccCCccccccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHH
Q 017259 78 GCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDL 157 (374)
Q Consensus 78 ~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l 157 (374)
|+|++....+...+...... +...+..... .|+++++++++ ++++++++++++|++|.+. +.+.+++|.++
T Consensus 114 ~~~~~~~~~~~~~g~~~~~~----~~~~~~~~~~-~d~~~l~~~l~---~~~~~v~i~~p~nptG~~~-~~~~l~~l~~~ 184 (383)
T 3kax_A 114 PIYPPFFEMVTTNNRQLCVS----PLQKQNDTYA-IDFEHLEKQFQ---QGVKLMLLCSPHNPIGRVW-KKEELTKLGSL 184 (383)
T ss_dssp SCCHHHHHHHHHTTCEEEEC----CCEEETTEEE-CCHHHHHHHHT---TTCCEEEEESSBTTTTBCC-CHHHHHHHHHH
T ss_pred CCcHHHHHHHHHcCCEEEec----cceecCCcEE-EcHHHHHHHhC---cCCeEEEEeCCCCCCCcCc-CHHHHHHHHHH
Confidence 99988766554433221110 1000000000 27999999994 5788888888899999877 78899999999
Q ss_pred HHhcCCEEEEeccccCCcccccCc-ccccC-----CCCCcEEEeccccc-CCccchhhhee-CHHHHhhcCCCCC-CCCC
Q 017259 158 CSKYNILMIADEIQSGLARSGRML-ASDWE-----EVRPDMVILGKALG-GGVIPVSAVLA-DKEVMLCIQPGEH-GSTF 228 (374)
Q Consensus 158 ~~~~~i~li~Dea~~~~~~~g~~~-~~~~~-----~~~~d~~s~sK~~~-~G~~~~G~~~~-~~~~~~~~~~~~~-~~~~ 228 (374)
|++||+++|+||+|+++.+.|... ..... +....+.|+||.++ +|+ |+||+++ ++++.+.+..... ...+
T Consensus 185 ~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~-r~G~~~~~~~~~~~~~~~~~~~~~~~ 263 (383)
T 3kax_A 185 CTKYNVIVVADEIHSDIIYADHTHTPFASLSEELAARTITCMAPSKTFNIAGL-QASIIIIPNEKLRQAFTSIQYRQGFH 263 (383)
T ss_dssp HHHHTCEEEEECTTTTCBCTTCCCCCGGGSCHHHHTTEEEEECSHHHHTCGGG-CCEEEECCCHHHHHHHHHHHHHTTCC
T ss_pred HHHCCCEEEEEccccccccCCCCceeHhhcCccccCcEEEEEEChhhccCcch-hheEEEeCCHHHHHHHHHHHhhcccC
Confidence 999999999999999887666421 11111 22233558899999 798 9999987 6788777764432 2345
Q ss_pred CCCHHHHHHHHHHHHHHhh--hcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccC-CCchhHHHHHHH
Q 017259 229 GGNPLASAVAIASLDVIRD--EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKT-ALPVSAYDICLK 305 (374)
Q Consensus 229 ~~~~~~~~aa~~al~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~~ 305 (374)
+.++++++++.++++...+ ++..++++++.+++.+.|++. +|++.......+.+.|+.++.. . +..++++.
T Consensus 264 ~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~ 337 (383)
T 3kax_A 264 GLNIFAYTAMQSAYTECNDWLNEIRFYIEDNAKFACEYIKDH---IPTLSVMKPEGSFLLWIDCSALNL---SQDERTKL 337 (383)
T ss_dssp CCCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHHHHHH---CTTCEECCCSBSSEEEEECGGGCC---CHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhh---CCCceEecCCceEEEEEEccccCC---CHHHHHHH
Confidence 7899999998888864221 234455555566666655543 3322221222344555777642 2 67899999
Q ss_pred HH-HCCeEeccC------CCCEEEEecCCCCCHHHHHHHHHHHHHHH
Q 017259 306 MK-ERGILAKPT------HDTIVRLTPPLSISSNELQEGSKALHDVL 345 (374)
Q Consensus 306 l~-~~Gi~v~~~------~~~~lRi~~~~~~~~e~i~~~~~~l~~~~ 345 (374)
|. ++||.++++ ..+++|++++ .+++++++++++|++++
T Consensus 338 l~~~~gi~v~~g~~~~~~~~~~iRi~~~--~~~~~i~~~l~~l~~~l 382 (383)
T 3kax_A 338 LEEKGKIIVEPGEKYGLGGEEHIGINIG--CPRSVLEEILNRLRHTF 382 (383)
T ss_dssp HHHTSCEECEESGGGCTTCTTEEEEECS--SCHHHHHHHHHHHHHHH
T ss_pred HHhhCCEEeECchhhcCCCCCeEEEEEc--CCHHHHHHHHHHHHHHh
Confidence 98 689999874 2589999966 58999999999999876
No 57
>2zyj_A Alpha-aminodipate aminotransferase; alpha-aminoadipate aminotransferase; HET: PGU; 1.67A {Thermus thermophilus} PDB: 2egy_A* 2dtv_A* 2zg5_A* 2zp7_A* 2z1y_A* 3cbf_A*
Probab=99.97 E-value=2.6e-31 Score=250.15 Aligned_cols=313 Identities=15% Similarity=0.136 Sum_probs=219.7
Q ss_pred hHHHHHHHhccc-cCcCCCCCcHHHHHHHHhcccCC--CeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEecc
Q 017259 2 KALQEQAEKLTL-SSRAFYNDKFPVFAERLTSMFGY--DMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCG 78 (374)
Q Consensus 2 ~a~~~~~~~~~~-~~~~~~~~~~~~l~~~l~~~~~~--~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~ 78 (374)
+++.+++++... ...+.......++++.+++++|. +++++++|++++++.+++++ .++| |+|++..|
T Consensus 54 ~a~~~~~~~~~~~~~~y~~~~~~~~l~~~la~~~g~~~~~v~~~~g~~~al~~~~~~~-----~~~g-----d~Vl~~~p 123 (397)
T 2zyj_A 54 EAAARILREKGEVALQYSPTEGYAPLRAFVAEWIGVRPEEVLITTGSQQALDLVGKVF-----LDEG-----SPVLLEAP 123 (397)
T ss_dssp HHHHHHHHHHHHHHTSCCCTTCCHHHHHHHHHHHTSCGGGEEEESHHHHHHHHHHHHH-----CCTT-----CEEEEEES
T ss_pred HHHHHHHHhcchhhhCCCCCCCCHHHHHHHHHHhCCChhhEEEeccHHHHHHHHHHHh-----CCCC-----CEEEEeCC
Confidence 355555554221 11222234577888888888764 58999999999999999988 4567 99999999
Q ss_pred CCCCcccccccccCCccccccCCCCCCCceeccC----CCHHHHHHHHHhcCCcEEEE-EEccccCCCCcccCChhHHHH
Q 017259 79 CFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDF----GDITALEKIFKESGDQIAGF-LFEPIQGEAGVIIPPDGYLKA 153 (374)
Q Consensus 79 ~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~d~~~le~~l~~~~~~~~~v-i~~~~~~~~g~~~~~~~~l~~ 153 (374)
+||+....+...+.. +..++. .|+++|+++++++ +++++ ++++++|++|.+. +.+++++
T Consensus 124 ~y~~~~~~~~~~g~~-------------~~~~~~~~~~~d~~~l~~~l~~~--~~~~v~~~~~~~nptG~~~-~~~~l~~ 187 (397)
T 2zyj_A 124 SYMGAIQAFRLQGPR-------------FLTVPAGEEGPDLDALEEVLKRE--RPRFLYLIPSFQNPTGGLT-PLPARKR 187 (397)
T ss_dssp CCHHHHHHHHTTCCE-------------EEEEEEETTEECHHHHHHHHHHC--CCSCEEECCBSCTTTCCBC-CHHHHHH
T ss_pred CcHHHHHHHHHcCCE-------------EEecCcCCCCCCHHHHHHHHhhc--CCeEEEECCCCcCCCCCcC-CHHHHHH
Confidence 999876654443221 111111 2799999999853 56676 4567788888776 7889999
Q ss_pred HHHHHHhcCCEEEEeccccCCcccccC-cccccCCCC------CcEEEecccccCCccchhhheeCHHHHhhcCCCCCCC
Q 017259 154 VRDLCSKYNILMIADEIQSGLARSGRM-LASDWEEVR------PDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGS 226 (374)
Q Consensus 154 l~~l~~~~~i~li~Dea~~~~~~~g~~-~~~~~~~~~------~d~~s~sK~~~~G~~~~G~~~~~~~~~~~~~~~~~~~ 226 (374)
|.++|++||++||+||+|+++.+.|.. .....++.. ..+.|+||.+++|+ |+||+++++++.+.+.......
T Consensus 188 l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~G~-r~G~~~~~~~~~~~l~~~~~~~ 266 (397)
T 2zyj_A 188 LLQMVMERGLVVVEDDAYRELYFGEARLPSLFELAREAGYPGVIYLGSFSKVLSPGL-RVAFAVAHPEALQKLVQAKQGA 266 (397)
T ss_dssp HHHHHHHHTCCEEEECTTTTCBCSSCCCCCHHHHHHHHTCCCEEEEEESTTTTCGGG-CCEEEECCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCEEEEeCCcccccCCCCCCCchhhhCcccCCCeEEEEecccccccccc-eeEEEecCHHHHHHHHHHHHhh
Confidence 999999999999999999987665542 222222111 22458999999888 9999999999888876543444
Q ss_pred CCCCCHHHHHHHHHHHHHHhh---hcHHHHHHHHHHHHHHHHHHHHHhCCC-ceeeEEEEeeeEEEEeccCCCchhHHHH
Q 017259 227 TFGGNPLASAVAIASLDVIRD---EKLAERSAHLGEELRQHLFKIQQQFPN-YVKEVRGRGLFNAVEFDKTALPVSAYDI 302 (374)
Q Consensus 227 ~~~~~~~~~~aa~~al~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 302 (374)
+++.+++++.++.++++.... ++..++++++.+++.+.|++. +|. +....+..+.++|+.++... +..++
T Consensus 267 ~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~---~~~g~~~~~~~~g~~~~~~~~~~~---~~~~~ 340 (397)
T 2zyj_A 267 DLHTPMLNQMLVHELLKEGFSERLERVRRVYREKAQAMLHALDRE---VPKEVRYTRPKGGMFVWMELPKGL---SAEGL 340 (397)
T ss_dssp HSSCCHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHH---SCTTSEECCCSBSSEEEEECSTTC---CHHHH
T ss_pred cCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHH---CCCCeEEccCCccEEEEEEcCCCC---CHHHH
Confidence 566789999888888764211 123344444555555555443 231 22212345778888886533 57889
Q ss_pred HHHHHHCCeEeccC--------CCCEEEEecCCCCCHHHHHHHHHHHHHHHhccC
Q 017259 303 CLKMKERGILAKPT--------HDTIVRLTPPLSISSNELQEGSKALHDVLELDL 349 (374)
Q Consensus 303 ~~~l~~~Gi~v~~~--------~~~~lRi~~~~~~~~e~i~~~~~~l~~~~~~~~ 349 (374)
.+.|.++||.+.++ ..+++||+++.. +++++++++++|+++++ ++
T Consensus 341 ~~~l~~~gi~v~~g~~f~~~~~~~~~iRis~~~~-~~~~i~~~~~~l~~~l~-~~ 393 (397)
T 2zyj_A 341 FRRALEENVAFVPGGPFFANGGGENTLRLSYATL-DREGIAEGVRRLGRALK-GL 393 (397)
T ss_dssp HHHHHHTTEEEEESGGGCTTSCCTTEEEEECSSS-CHHHHHHHHHHHHHHHH-HH
T ss_pred HHHHHHCCCEEechHHhcCCCCCCCeEEEEcCCC-CHHHHHHHHHHHHHHHH-HH
Confidence 99999999999874 358999998764 89999999999999987 54
No 58
>3dyd_A Tyrosine aminotransferase; PLP, SGC, structural genomics, structural genomics consortium, disease mutation, phenylalani catabolism; HET: PLP; 2.30A {Homo sapiens} PDB: 3pdx_A*
Probab=99.97 E-value=1.7e-30 Score=246.91 Aligned_cols=318 Identities=12% Similarity=0.089 Sum_probs=218.7
Q ss_pred hHHHHHHHhccccCcCCCCCcHHHHHHHHhcccC-------CCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEE
Q 017259 2 KALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFG-------YDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIV 74 (374)
Q Consensus 2 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-------~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi 74 (374)
+|+.+++.+.. ...+.+.....++++.++++++ .+++++|+||++|++.+++.+ .++| ++|+
T Consensus 78 ~a~~~~~~~~~-~~~y~~~~g~~~lr~~la~~~~~~~~~~~~~~v~~t~g~t~al~~~~~~l-----~~~g-----d~vl 146 (427)
T 3dyd_A 78 QAMKDALDSGK-YNGYAPSIGFLSSREEIASYYHCPEAPLEAKDVILTSGCSQAIDLCLAVL-----ANPG-----QNIL 146 (427)
T ss_dssp HHHHHHHHHCC-SSSCCCTTCCHHHHHHHHHHHCBTTBCCCGGGEEEESSHHHHHHHHHHHH-----CCTT-----CEEE
T ss_pred HHHHHHHhcCc-CCCCCCCCCcHHHHHHHHHHHhhcCCCCChHHEEEecCcHHHHHHHHHHh-----cCCC-----CEEE
Confidence 34555554421 1122345567788888888765 568999999999999999998 4567 9999
Q ss_pred EeccCCCCcccccccccCCccccccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHH
Q 017259 75 SCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAV 154 (374)
Q Consensus 75 ~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l 154 (374)
+..|+|+++...+...+....... +.+. .+.. -|+++++++++ ++++++++++++|++|.+. +++++++|
T Consensus 147 ~~~p~~~~~~~~~~~~g~~~~~~~-~~~~-~~~~----~d~~~l~~~l~---~~~~~v~i~~p~nptG~~~-~~~~l~~i 216 (427)
T 3dyd_A 147 VPRPGFSLYKTLAESMGIEVKLYN-LLPE-KSWE----IDLKQLEYLID---EKTACLIVNNPSNPCGSVF-SKRHLQKI 216 (427)
T ss_dssp EEESCCTHHHHHHHHTTCEEEEEE-EEGG-GTTE----ECHHHHHSSCC---TTEEEEEEESSCTTTCCCC-CHHHHHHH
T ss_pred EcCCCchhHHHHHHHcCCEEEEEe-cccc-cCCC----CCHHHHHHHhc---cCCCEEEEECCCCCCCCCC-CHHHHHHH
Confidence 999999887655544432211110 0000 0000 17888888876 4688888888888899776 89999999
Q ss_pred HHHHHhcCCEEEEeccccCCcccccCc-ccccCCCCCcEE---Eeccccc-CCccchhhheeC-------HHHHhhcCCC
Q 017259 155 RDLCSKYNILMIADEIQSGLARSGRML-ASDWEEVRPDMV---ILGKALG-GGVIPVSAVLAD-------KEVMLCIQPG 222 (374)
Q Consensus 155 ~~l~~~~~i~li~Dea~~~~~~~g~~~-~~~~~~~~~d~~---s~sK~~~-~G~~~~G~~~~~-------~~~~~~~~~~ 222 (374)
.++|++||+++|+||+|+++++.|..+ .....+..++++ |+||.++ +|+ |+||++++ +++.+.+...
T Consensus 217 ~~~~~~~~~~~i~Deay~~~~~~g~~~~~~~~~~~~~~vi~~~S~sK~~~~~G~-riG~~~~~~~~~~~~~~i~~~l~~~ 295 (427)
T 3dyd_A 217 LAVAARQCVPILADEIYGDMVFSDCKYEPLATLSTDVPILSCGGLAKRWLVPGW-RLGWILIHDRRDIFGNEIRDGLVKL 295 (427)
T ss_dssp HHHHHHTTCCEEEECTTTTCBCSSCCCCCGGGGCSSCCEEEEEESTTTSSCGGG-CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHHCCCEEEEEcCchhhccCCCcCccHHHhCCCCcEEEEeeccccCCCcCc-ceEEEEecCcchhhHHHHHHHHHHH
Confidence 999999999999999999987766533 333334444555 9999976 688 99998876 4566555432
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHhh---hcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCC--Cch
Q 017259 223 EHGSTFGGNPLASAVAIASLDVIRD---EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTA--LPV 297 (374)
Q Consensus 223 ~~~~~~~~~~~~~~aa~~al~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~--~~~ 297 (374)
. ..++++++++++++.++++.... ++..++++++++++.+.|++ +|++....+..+.++++.++... .+.
T Consensus 296 ~-~~~~~~~~~~~~a~~~~L~~~~~~~~~~~~~~~~~~~~~l~~~L~~----~~g~~~~~p~~g~~~~~~l~~~~~~~~~ 370 (427)
T 3dyd_A 296 S-QRILGPCTIVQGALKSILCRTPGEFYHNTLSFLKSNADLCYGALAA----IPGLRPVRPSGAMYLMVGIEMEHFPEFE 370 (427)
T ss_dssp H-HHHCCSCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHH----STTEEEECCSBTTEEEEEECGGGCTTCS
T ss_pred H-hccCCCCHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhc----CCCceecCCCeeEEEEEecCHhhcCCCC
Confidence 1 12577899999999998875322 23445555555555555543 33332222344667777775210 011
Q ss_pred hHHHHHHHHH-HCCeEeccC----CCCEEEEecCCCCCHHHHHHHHHHHHHHHhccC
Q 017259 298 SAYDICLKMK-ERGILAKPT----HDTIVRLTPPLSISSNELQEGSKALHDVLELDL 349 (374)
Q Consensus 298 ~~~~~~~~l~-~~Gi~v~~~----~~~~lRi~~~~~~~~e~i~~~~~~l~~~~~~~~ 349 (374)
+..++++.|+ ++||.+.++ .++++||++ ..+++++++++++|+++++ ++
T Consensus 371 ~~~~~~~~l~~~~gV~v~~g~~~~~~~~iRis~--~~~~e~i~~~l~~l~~~l~-~~ 424 (427)
T 3dyd_A 371 NDVEFTERLVAEQSVHCLPATCFEYPNFIRVVI--TVPEVMMLEACSRIQEFCE-QH 424 (427)
T ss_dssp SHHHHHHHHHHHHCEECEEGGGGTCTTEEEEES--CSCHHHHHHHHHHHHHHHH-HH
T ss_pred CHHHHHHHHHHHCCEEEECCcccCCCCeEEEEE--CCCHHHHHHHHHHHHHHHH-Hh
Confidence 5678999886 789999876 368999995 4799999999999999998 65
No 59
>3ly1_A Putative histidinol-phosphate aminotransferase; structural G joint center for structural genomics, JCSG; HET: MSE PLP CIT; 1.80A {Erwinia carotovora atroseptica}
Probab=99.97 E-value=3.1e-30 Score=238.90 Aligned_cols=286 Identities=16% Similarity=0.135 Sum_probs=213.6
Q ss_pred CCCCcHHHHHHHHhcccC--CCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccCCcc
Q 017259 18 FYNDKFPVFAERLTSMFG--YDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNE 95 (374)
Q Consensus 18 ~~~~~~~~l~~~l~~~~~--~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~ 95 (374)
|+.+...+++++++++++ .+++++++|+++|++.+++.+ .++| |+|++..|+|++....+...+..
T Consensus 48 y~~~~~~~l~~~la~~~~~~~~~i~~~~g~~~a~~~~~~~l-----~~~g-----d~vl~~~~~~~~~~~~~~~~g~~-- 115 (354)
T 3ly1_A 48 YAKNEILMLGNKLAAHHQVEAPSILLTAGSSEGIRAAIEAY-----ASLE-----AQLVIPELTYGDGEHFAKIAGMK-- 115 (354)
T ss_dssp CCHHHHHHHHHHHHHHTTSCGGGEEEESHHHHHHHHHHHHH-----CCTT-----CEEEEESSSCTHHHHHHHHTTCE--
T ss_pred CCCCchHHHHHHHHHHhCCChHHEEEeCChHHHHHHHHHHH-----hCCC-----CeEEECCCCchHHHHHHHHcCCE--
Confidence 456677899999999987 468999999999999999988 5667 99999999998876555443322
Q ss_pred ccccCCCCCCCceeccCC-----CHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEecc
Q 017259 96 AIRGFGPLLPGHLKVDFG-----DITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEI 170 (374)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~-----d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea 170 (374)
+..++.+ |+++++++++++ ++++++++++++|++|.+. +.+.+++|+++| +||+++|+||+
T Consensus 116 -----------~~~~~~~~~~~~d~~~l~~~l~~~-~~~~~v~l~~p~nptG~~~-~~~~l~~l~~~~-~~~~~li~De~ 181 (354)
T 3ly1_A 116 -----------VTKVKMLDNWAFDIEGLKAAVAAY-SGPSIVYLVNPNNPTGTIT-PADVIEPWIASK-PANTMFIVDEA 181 (354)
T ss_dssp -----------EEEECCCTTSCCCHHHHHHHHHTC-SSCEEEEEESSCTTTCCCC-CHHHHHHHHHTC-CTTEEEEEECT
T ss_pred -----------EEEecCCCCCCCCHHHHHHHhccC-CCCCEEEEeCCCCCcCCCc-CHHHHHHHHHhC-CCCeEEEEecc
Confidence 2222222 899999999853 4688999888899999888 566677777777 69999999999
Q ss_pred ccCCcccccCccc-c---cC-CCCCcEEEeccccc-CCccchhhheeCHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHH
Q 017259 171 QSGLARSGRMLAS-D---WE-EVRPDMVILGKALG-GGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDV 244 (374)
Q Consensus 171 ~~~~~~~g~~~~~-~---~~-~~~~d~~s~sK~~~-~G~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~al~~ 244 (374)
|+++.+.+..... . .. +....+.|+||.++ +|+ |+||+++++++.+.+..... .++.+++++.++.++++.
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~-r~G~~~~~~~~~~~~~~~~~--~~~~~~~~~~a~~~~l~~ 258 (354)
T 3ly1_A 182 YAEFVNDPRFRSISPMITQGAENIILLKTFSKIHAMAGM-RVGYAVAHPTVIALMGRYVA--GEKINFSGVDAALASMND 258 (354)
T ss_dssp TGGGCCCTTCCCSHHHHHTTCSSEEEEEESSSTTCCGGG-CCEEEECCHHHHHHHGGGTT--CSCCCHHHHHHHHHHTTC
T ss_pred HHHhccccccCCHHHHhhhcCCCEEEEeeChhhccChhh-hheeeecCHHHHHHHHHhcC--CCCCCHHHHHHHHHHhcC
Confidence 9987655532111 1 11 22233458999998 798 99999999999888876433 378899999999888774
Q ss_pred Hhh-hcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCchhHHHHHHHHHHCCeEec---cCCCCE
Q 017259 245 IRD-EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAK---PTHDTI 320 (374)
Q Consensus 245 ~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~---~~~~~~ 320 (374)
... ++..++++++.+++.+.|++.. +. . .++.+.++++.++. +..++.+.|.++||.++ ....++
T Consensus 259 ~~~~~~~~~~~~~~~~~l~~~l~~~~--~~-~---~~~~~~~~~~~~~~-----~~~~~~~~l~~~gi~v~g~~~~~~~~ 327 (354)
T 3ly1_A 259 SAFITYSKKSNDVSRQILLKALEDLK--LP-Y---LPSEGNFVFHQLVV-----PLKDYQTHMADAGVLIGRAFPPADNW 327 (354)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT--CC-B---CCCCSSEEEEECSS-----CHHHHHHHHHHTTEECCCCCTTCTTE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCC--Ce-E---CCCCceEEEEECCC-----CHHHHHHHHHHCCEEEeecCCCCCCE
Confidence 311 2445666667777777776652 21 1 23467788887764 46889999999999988 113689
Q ss_pred EEEecCCCCCHHHHHHHHHHHHHHHh
Q 017259 321 VRLTPPLSISSNELQEGSKALHDVLE 346 (374)
Q Consensus 321 lRi~~~~~~~~e~i~~~~~~l~~~~~ 346 (374)
+||+++ +++++++++++|+++++
T Consensus 328 iRis~~---~~~~i~~~~~~l~~~l~ 350 (354)
T 3ly1_A 328 CRISLG---TPQEMQWVADTMREFRK 350 (354)
T ss_dssp EEEECC---CHHHHHHHHHHHHHHHH
T ss_pred EEEEcC---CHHHHHHHHHHHHHHHH
Confidence 999943 89999999999999987
No 60
>3g0t_A Putative aminotransferase; NP_905498.1, putative aspartate aminotransferase, structural genomics, joint center for structural genomics; HET: MSE LLP PE4; 1.75A {Porphyromonas gingivalis}
Probab=99.97 E-value=1.9e-30 Score=247.20 Aligned_cols=289 Identities=12% Similarity=0.123 Sum_probs=212.4
Q ss_pred HHHHHHHHhcccC--------CCeEEecCChHHHHHHHHHHHHHcccccccCCCCcc--EEEEeccCCCCcccccccccC
Q 017259 23 FPVFAERLTSMFG--------YDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEA--IIVSCCGCFHGRTLAAISMSC 92 (374)
Q Consensus 23 ~~~l~~~l~~~~~--------~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~--~vi~~~~~yhg~~~~~~~~~~ 92 (374)
..++++.++++++ .+++++|+|++++++.+++.+.. .++| | +|++..|+|++....+...+.
T Consensus 84 ~~~lr~~la~~~~~~~g~~~~~~~i~~t~g~t~al~~~~~~l~~---~~~g-----d~~~Vl~~~p~~~~~~~~~~~~g~ 155 (437)
T 3g0t_A 84 LPELKQEASRFAKLFVNIDIPARACVPTVGSMQGCFVSFLVANR---THKN-----REYGTLFIDPGFNLNKLQCRILGQ 155 (437)
T ss_dssp CHHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHHHHHHHHHTT---SCTT-----CSCCEEEEESCCHHHHHHHHHHTC
T ss_pred hHHHHHHHHHHHHHhhCCCCCcccEEEeCCHHHHHHHHHHHHhc---CCCC-----CccEEEEeCCCcHhHHHHHHHcCC
Confidence 3566666666543 56899999999999999998830 1567 8 999999999887666554432
Q ss_pred CccccccCCCCCCCceeccCC------CHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEE
Q 017259 93 DNEAIRGFGPLLPGHLKVDFG------DITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMI 166 (374)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~------d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li 166 (374)
. +..++.+ |++++++++++ +++++++++.++|++|.+. +.+.+++|.++|++||++||
T Consensus 156 ~-------------~~~v~~~~~~~~~d~~~l~~~l~~--~~~~~v~l~~p~nptG~~~-~~~~l~~i~~~a~~~~~~li 219 (437)
T 3g0t_A 156 K-------------FESFDLFEYRGEKLREKLESYLQT--GQFCSIIYSNPNNPTWQCM-TDEELRIIGELATKHDVIVI 219 (437)
T ss_dssp C-------------CEEEEGGGGCTTHHHHHHHHHHTT--TCCCEEEEESSCTTTCCCC-CHHHHHHHHHHHHHTTCEEE
T ss_pred E-------------EEEEeecCCCCccCHHHHHHHHhc--CCceEEEEeCCCCCCCCcC-CHHHHHHHHHHHHHCCcEEE
Confidence 2 2222221 78899999843 4678888877788899877 78889999999999999999
Q ss_pred EeccccCCcccccCcc-------ccc---CCCCCcEEEeccccc-CCccchhhheeCHHHHh-h----------------
Q 017259 167 ADEIQSGLARSGRMLA-------SDW---EEVRPDMVILGKALG-GGVIPVSAVLADKEVML-C---------------- 218 (374)
Q Consensus 167 ~Dea~~~~~~~g~~~~-------~~~---~~~~~d~~s~sK~~~-~G~~~~G~~~~~~~~~~-~---------------- 218 (374)
+||+|+++.+.+.... ... .+....+.|+||.++ +|+ |+||+++++++.+ .
T Consensus 220 ~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~-r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (437)
T 3g0t_A 220 EDLAYFGMDFRKDYSHPGEPLYQPSVANYTDNYILALSSSKAFSYAGQ-RIGVLMISGKLYEREYPDLEESFGRLRFGEA 298 (437)
T ss_dssp EECTTTTCCTTSCCCSTTSSCCCCCGGGTCSCEEEEEESTTTTSCGGG-CCEEEEECHHHHHCBCGGGHHHHSCSBHHHH
T ss_pred EEcchhhcccCCCcCcccccchhhccCCCCCcEEEEEcCccCCCCccc-eeEEEEECHHHhhhhhhcccccccccchhHH
Confidence 9999997644432111 111 122222448999999 898 9999999999888 7
Q ss_pred -cCCCCCCCCCCCCHHHHHHHHHHHHHHhh-----hcHHHHHHHHHHHHHHHHHHHHHhCCCceee------EE-EEeee
Q 017259 219 -IQPGEHGSTFGGNPLASAVAIASLDVIRD-----EKLAERSAHLGEELRQHLFKIQQQFPNYVKE------VR-GRGLF 285 (374)
Q Consensus 219 -~~~~~~~~~~~~~~~~~~aa~~al~~~~~-----~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~------~~-~~g~~ 285 (374)
+.......+++.+.+++.++.++++.... ++..++++++.+++.+.|+++ ++... .+ ..+.+
T Consensus 299 ~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-----g~~~~~~~~~~~~~~~~~~ 373 (437)
T 3g0t_A 299 LSSSALYALSSGATHSAQWGMAAMLKACNDGEYNFRDSVIEYGRKARIMKKMFLDN-----GFNIVYDKDGNEPLADGFY 373 (437)
T ss_dssp HHTTHHHHHHSSSCHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTT-----TEEESSCEETTEECCSSSE
T ss_pred HHHHHHhhhcCCCCHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHHHHHHHHHHHc-----CCEEeccccCCCCCceeEE
Confidence 66544445678899999999999987642 345566666666666666554 22222 23 46778
Q ss_pred EEEEeccCCCchhHHHHHHHHHHCCeEeccCC------CCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 017259 286 NAVEFDKTALPVSAYDICLKMKERGILAKPTH------DTIVRLTPPLSISSNELQEGSKALHDVLE 346 (374)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~------~~~lRi~~~~~~~~e~i~~~~~~l~~~~~ 346 (374)
+|+.++. . +..++.+.|.++||.+.++. ++++||+++.. +++++++++++|+++++
T Consensus 374 ~~~~~~~-~---~~~~l~~~L~~~gi~v~~~~~~~~~~~~~iRis~~~~-~~e~i~~~~~~l~~~~~ 435 (437)
T 3g0t_A 374 FTVGYKG-M---DSSKLIEKFVRYGMCAITLKTTGSKRNEAMRICTSLL-PESQFPDLEKRLQMLNA 435 (437)
T ss_dssp EEEEETT-C---CHHHHHHHHHHTTEECEESTTTTCCCTTCEEEECSSS-CGGGHHHHHHHHHHHHH
T ss_pred EEEecCC-C---CHHHHHHHHHHcCeEEeeccccCCCCCCEEEEEEecC-CHHHHHHHHHHHHHHHh
Confidence 8888873 2 68899999999999998864 27899998844 99999999999998876
No 61
>1d2f_A MALY protein; aminotransferase fold, large PLP-binding domain, small C-TER domain, open alpha-beta structure., transferase; HET: PLP; 2.50A {Escherichia coli} SCOP: c.67.1.3
Probab=99.97 E-value=4.2e-30 Score=241.26 Aligned_cols=295 Identities=13% Similarity=0.103 Sum_probs=204.7
Q ss_pred cHHHHHHHHhcccC----CCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccCCcccc
Q 017259 22 KFPVFAERLTSMFG----YDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAI 97 (374)
Q Consensus 22 ~~~~l~~~l~~~~~----~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~ 97 (374)
+++.+++.+.+.+| .+++++|+|+++|++.+++++ ..+| |+|++..|+||+....+...+......
T Consensus 69 lr~~la~~l~~~~g~~~~~~~v~~t~g~~~al~~~~~~l-----~~~g-----d~vl~~~p~y~~~~~~~~~~g~~~~~v 138 (390)
T 1d2f_A 69 FLAAIAHWFSTQHYTAIDSQTVVYGPSVIYMVSELIRQW-----SETG-----EGVVIHTPAYDAFYKAIEGNQRTVMPV 138 (390)
T ss_dssp HHHHHHHHHHHHSCCCCCGGGEEEESCHHHHHHHHHHHS-----SCTT-----CEEEEEESCCHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHHHHhcCCCCCHHHEEEcCCHHHHHHHHHHHh-----cCCC-----CEEEEcCCCcHHHHHHHHHCCCEEEEe
Confidence 44555555554434 568999999999999999987 4567 999999999998766554433221111
Q ss_pred ccCCCCCCCceeccC-CCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEeccccCCcc
Q 017259 98 RGFGPLLPGHLKVDF-GDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLAR 176 (374)
Q Consensus 98 ~~~~~~~~~~~~~~~-~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~~~~~ 176 (374)
+...+. -.+ .|+++|++++++ .+++++++++++|++|.+. +.+++++|.++|++||++||+||+|+++.+
T Consensus 139 ----~~~~~~--~~~~~d~~~l~~~l~~--~~~~~v~l~~p~nptG~~~-~~~~l~~l~~~~~~~~~~li~De~~~~~~~ 209 (390)
T 1d2f_A 139 ----ALEKQA--DGWFCDMGKLEAVLAK--PECKIMLLCSPQNPTGKVW-TCDELEIMADLCERHGVRVISDEIHMDMVW 209 (390)
T ss_dssp ----ECEECS--SSEECCHHHHHHHHTS--TTEEEEEEESSCTTTCCCC-CTTHHHHHHHHHHHTTCEEEEECTTTTCBC
T ss_pred ----ecccCC--CccccCHHHHHHHhcc--CCCeEEEEeCCCCCCCcCc-CHHHHHHHHHHHHHcCCEEEEEcccccccc
Confidence 100000 001 379999999873 2688888888888889776 788999999999999999999999998866
Q ss_pred cccCcccccCCCCC---c-EEEeccccc-CCccchhhheeC-HHHHhhcCCCCC-CCCC-CCCHHHHHHHHHHHHHHhh-
Q 017259 177 SGRMLASDWEEVRP---D-MVILGKALG-GGVIPVSAVLAD-KEVMLCIQPGEH-GSTF-GGNPLASAVAIASLDVIRD- 247 (374)
Q Consensus 177 ~g~~~~~~~~~~~~---d-~~s~sK~~~-~G~~~~G~~~~~-~~~~~~~~~~~~-~~~~-~~~~~~~~aa~~al~~~~~- 247 (374)
.|..+. ....+.+ | +.|+||.++ +|+ |+||++++ +++.+.+..... ..++ +.++++++++.++++...+
T Consensus 210 ~g~~~~-~~~~~~~~~~d~~~s~sK~~~~~G~-r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~ 287 (390)
T 1d2f_A 210 GEQPHI-PWSNVARGDWALLTSGSKSFNIPAL-TGAYGIIENSSSRDAYLSALKGRDGLSSPSVLALTAHIAAYQQGAPW 287 (390)
T ss_dssp SSSCCC-CGGGTCCSSEEEEECSHHHHTCGGG-CCEEEEECSHHHHHHHHHHHHTTSCCCSCCHHHHHHHHHHHHHCHHH
T ss_pred CCCCCc-CHHHcchhhHhhccCccHhhcccCh-hheEEEECCHHHHHHHHHHHhhhcccCCCCHHHHHHHHHHHhcCHHH
Confidence 554321 1111211 2 779999998 798 99999885 777777765433 4455 7789999988888875211
Q ss_pred -hcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEe-eeEEEEeccC-CCchhHHHHHHHHH-HCCeEeccCC------
Q 017259 248 -EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRG-LFNAVEFDKT-ALPVSAYDICLKMK-ERGILAKPTH------ 317 (374)
Q Consensus 248 -~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g-~~~~~~~~~~-~~~~~~~~~~~~l~-~~Gi~v~~~~------ 317 (374)
++..++++++.+++.+.|++. +|++ ....+.+ .++|+.++.. . +..++.+.|. ++||.+.++.
T Consensus 288 ~~~~~~~~~~~~~~l~~~L~~~---~~~~-~~~~~~~~~~~~~~~~~~~~---~~~~l~~~l~~~~gi~v~~g~~f~~~~ 360 (390)
T 1d2f_A 288 LDALRIYLKDNLTYIADKMNAA---FPEL-NWQIPQSTYLAWLDLRPLNI---DDNALQKALIEQEKVAIMPGYTYGEEG 360 (390)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH---CSSC-CCCCCSBCSEEEEECGGGCC---CHHHHHHHHHHTTCEECEEGGGGCGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHhh---CCCC-EEecCCccEEEEEEccccCC---CHHHHHHHHHHHcCEEeeCccccCCCC
Confidence 133444555555555555442 3322 2223334 4457777642 2 5778999999 5799998752
Q ss_pred CCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 017259 318 DTIVRLTPPLSISSNELQEGSKALHDVLE 346 (374)
Q Consensus 318 ~~~lRi~~~~~~~~e~i~~~~~~l~~~~~ 346 (374)
.+++||+++. +++++++++++|+++++
T Consensus 361 ~~~~Ris~~~--~~~~l~~~l~~l~~~l~ 387 (390)
T 1d2f_A 361 RGFVRLNAGC--PRSKLEKGVAGLINAIR 387 (390)
T ss_dssp TTEEEEECCS--CHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEecC--CHHHHHHHHHHHHHHHH
Confidence 5799999664 68899999999999987
No 62
>1vp4_A Aminotransferase, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE PLP; 1.82A {Thermotoga maritima} SCOP: c.67.1.1
Probab=99.97 E-value=5.2e-31 Score=250.35 Aligned_cols=298 Identities=17% Similarity=0.191 Sum_probs=212.5
Q ss_pred cHHHHHHHHhccc----C-----CCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccC
Q 017259 22 KFPVFAERLTSMF----G-----YDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSC 92 (374)
Q Consensus 22 ~~~~l~~~l~~~~----~-----~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~ 92 (374)
...++++.+++++ | .+++++|+|++++++.+++++ ..+| |+|++..|+|++....+...+.
T Consensus 86 g~~~lr~~la~~l~~~~g~~~~~~~~v~~t~G~~~al~~~~~~l-----~~~g-----d~Vl~~~p~y~~~~~~~~~~g~ 155 (425)
T 1vp4_A 86 GDPVLKQQILKLLERMYGITGLDEDNLIFTVGSQQALDLIGKLF-----LDDE-----SYCVLDDPAYLGAINAFRQYLA 155 (425)
T ss_dssp CCHHHHHHHHHHHHHHHCCCSCCGGGEEEEEHHHHHHHHHHHHH-----CCTT-----CEEEEEESCCHHHHHHHHTTTC
T ss_pred CCHHHHHHHHHHHHhccCCCCCCcccEEEeccHHHHHHHHHHHh-----CCCC-----CEEEEeCCCcHHHHHHHHHcCC
Confidence 3455555555544 6 358999999999999999988 5567 9999999999987665544332
Q ss_pred CccccccCCCCCCCceeccC----CCHHHHHHHHHhc-----CCcEEEEE-EccccCCCCcccCChhHHHHHHHHHHhcC
Q 017259 93 DNEAIRGFGPLLPGHLKVDF----GDITALEKIFKES-----GDQIAGFL-FEPIQGEAGVIIPPDGYLKAVRDLCSKYN 162 (374)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~----~d~~~le~~l~~~-----~~~~~~vi-~~~~~~~~g~~~~~~~~l~~l~~l~~~~~ 162 (374)
. +..++. .|+++|++++++. ++++++++ +.+++|++|.+. +.+++++|.++|++||
T Consensus 156 ~-------------~~~v~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~v~~~~~~~nptG~~~-~~~~l~~l~~~~~~~~ 221 (425)
T 1vp4_A 156 N-------------FVVVPLEDDGMDLNVLERKLSEFDKNGKIKQVKFIYVVSNFHNPAGVTT-SLEKRKALVEIAEKYD 221 (425)
T ss_dssp E-------------EEEEEEETTEECHHHHHHHHHHHHHTTCGGGEEEEEEECSSCTTTCCCC-CHHHHHHHHHHHHHTT
T ss_pred E-------------EEEeccCCCCCCHHHHHHHHHhhhhcccCCCceEEEECCCCCCCCCCcC-CHHHHHHHHHHHHHcC
Confidence 1 111111 2799999998751 13688874 566788888776 7899999999999999
Q ss_pred CEEEEeccccCCcccccC-cccccC---CCCCcEEEecccccCCccchhhheeCHHHHhhcCCCCCCCCCCCCHHHHHHH
Q 017259 163 ILMIADEIQSGLARSGRM-LASDWE---EVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVA 238 (374)
Q Consensus 163 i~li~Dea~~~~~~~g~~-~~~~~~---~~~~d~~s~sK~~~~G~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa 238 (374)
++||+||+|+++.+.|.. .....+ +....+.|+||.+++|+ |+||+++++++.+.+.......+++.+++++.++
T Consensus 222 ~~li~De~~~~~~~~g~~~~~~~~~~~~~~~i~~~s~sK~~~~G~-r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~ 300 (425)
T 1vp4_A 222 LFIVEDDPYGALRYEGETVDPIFKIGGPERVVLLNTFSKVLAPGL-RIGMVAGSKEFIRKIVQAKQSADLCSPAITHRLA 300 (425)
T ss_dssp CEEEEECSSTTCBCSSCCCCCHHHHHCTTTEEEEEESTTTTCGGG-CEEEEECCHHHHHHHHHHHHHHHSSCCHHHHHHH
T ss_pred CEEEEECCCccccCCCCCCcCHHHhCCCCCEEEEecccccccccc-ceEEEeeCHHHHHHHHHHhhhhcCCCCHHHHHHH
Confidence 999999999987665542 122111 11122458999999898 9999999999888876544444567799999999
Q ss_pred HHHHHHHh--h--hcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCchhHHHHHHHHHHCCeEec
Q 017259 239 IASLDVIR--D--EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAK 314 (374)
Q Consensus 239 ~~al~~~~--~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~ 314 (374)
.++++... + +...++++++.+++.+.|++.....+++....+..+.++|+.++... +..++++.|.++||.+.
T Consensus 301 ~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~g~~~~~~~~g~~~~~~~~~~~---~~~~l~~~l~~~gi~v~ 377 (425)
T 1vp4_A 301 ARYLERYDLLEQLKPTIELYRRKRTVMLNALEEYFSDIPGVKWVKSEGGLFIWLTLPEGF---DTWEMFEYAKRKKVFYV 377 (425)
T ss_dssp HHHHHHSCHHHHTHHHHHHHHHHHHHHHHHHHHHSTTSTTCEECCCSBSSEEEEECCTTC---CTTTTHHHHHHHTEECE
T ss_pred HHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCceEEecCCccEEEEEEcCCCC---CHHHHHHHHHHCCCEEE
Confidence 98887631 1 23455556666667666665421100122112345778888886432 45689999999999998
Q ss_pred cC--------CCCEEEEecCCCCCHHHHHHHHHHHHHHHhccC
Q 017259 315 PT--------HDTIVRLTPPLSISSNELQEGSKALHDVLELDL 349 (374)
Q Consensus 315 ~~--------~~~~lRi~~~~~~~~e~i~~~~~~l~~~~~~~~ 349 (374)
++ ..+++||+++.. +++++++++++|+++++ ++
T Consensus 378 ~g~~f~~~~~~~~~iRis~~~~-~~e~i~~~l~~l~~~l~-~~ 418 (425)
T 1vp4_A 378 PGRVFKVYDEPSPSMRLSFCLP-PDEKIVEGIKRLREVVL-EY 418 (425)
T ss_dssp EGGGGCTTCCCCSEEEEECSSS-CHHHHHHHHHHHHHHHH-HH
T ss_pred CchhhcCCCCCCCeEEEEeCCC-CHHHHHHHHHHHHHHHH-HH
Confidence 74 257999998764 89999999999999987 54
No 63
>2dou_A Probable N-succinyldiaminopimelate aminotransfera; PLP-dependent enzyme, structural genomics, NPPSFA; HET: EPE; 2.30A {Thermus thermophilus}
Probab=99.97 E-value=4.5e-31 Score=246.72 Aligned_cols=289 Identities=16% Similarity=0.180 Sum_probs=204.6
Q ss_pred cHHHHHHHHhccc----CC----C-eEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccC
Q 017259 22 KFPVFAERLTSMF----GY----D-MVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSC 92 (374)
Q Consensus 22 ~~~~l~~~l~~~~----~~----~-~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~ 92 (374)
...++++.+++++ |. + ++++++|++++++.+++++ .++| |+|++..|+||+....+...+.
T Consensus 64 ~~~~l~~~ia~~~~~~~g~~~~~~~~v~~~~g~~~a~~~~~~~l-----~~~g-----d~vl~~~p~y~~~~~~~~~~g~ 133 (376)
T 2dou_A 64 CTLPFLEEAARWYEGRYGVGLDPRREALALIGSQEGLAHLLLAL-----TEPE-----DLLLLPEVAYPSYFGAARVASL 133 (376)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCCTTTSEEEESSHHHHHHHHHHHH-----CCTT-----CEEEEESSCCHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHHHHhCCCCCCCccEEEcCCcHHHHHHHHHHh-----cCCC-----CEEEECCCCcHhHHHHHHHcCC
Confidence 4566777777765 65 4 8999999999999999988 4567 9999999999987765544332
Q ss_pred CccccccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEecccc
Q 017259 93 DNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQS 172 (374)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~ 172 (374)
..... +...+.. .|+++++++++ ++++++++++++|++|.+. +.+++++|.++|++||++||+||+|+
T Consensus 134 ~~~~~----~~~~~~~----~d~~~l~~~l~---~~~~~v~l~~p~nptG~~~-~~~~l~~l~~~~~~~~~~li~De~~~ 201 (376)
T 2dou_A 134 RTFLI----PLREDGL----ADLKAVPEGVW---REAKVLLLNYPNNPTGAVA-DWGYFEEALGLARKHGLWLIHDNPYV 201 (376)
T ss_dssp EEEEE----CBCTTSS----BCGGGSCHHHH---HHEEEEEECSSCTTTCCCC-CHHHHHHHHHHHHHTTCEEEEECTTG
T ss_pred EEEEe----eCCCCCC----CCHHHHHHhhc---cCceEEEECCCCCCcCccC-CHHHHHHHHHHHHHcCCEEEEEccch
Confidence 21111 1101110 26788888886 4688999988888888776 78999999999999999999999999
Q ss_pred CCcccccCcc-cccC---CCCCcEEEeccccc-CCccchhhheeCHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHhh
Q 017259 173 GLARSGRMLA-SDWE---EVRPDMVILGKALG-GGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRD 247 (374)
Q Consensus 173 ~~~~~g~~~~-~~~~---~~~~d~~s~sK~~~-~G~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~al~~~~~ 247 (374)
++.+.+.... .... +....+.|+||.++ +|+ |+||+++++++.+.+.......+++.++++++++.++++...+
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~-r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~ 280 (376)
T 2dou_A 202 DQVYEGEAPSPLALPGAKERVVELFSLSKSYNLAGF-RLGFALGSEEALARLERVKGVIDFNQYAGVLRMGVEALKTPKE 280 (376)
T ss_dssp GGBSSSCCCCGGGSTTGGGTEEEEEEHHHHHTCGGG-CCEEEEECHHHHHHHHHHHHHHCCCSCHHHHHHHHHHHTSCHH
T ss_pred hcccCCCCCChhhcCCCCCcEEEEecchhhcCChhh-eeEEEecCHHHHHHHHHHHHhcccCCCHHHHHHHHHHHhCcHH
Confidence 8765543211 2221 22233458999998 798 9999999999988877544445567789999888888864211
Q ss_pred --hcHHHHHHHHHHHHHHHHHHHHHhCCCceeeE-EEEeeeEEEEeccCCCchhHHHHHHHHHHCCeEeccCC------C
Q 017259 248 --EKLAERSAHLGEELRQHLFKIQQQFPNYVKEV-RGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTH------D 318 (374)
Q Consensus 248 --~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~------~ 318 (374)
++..++++++.+++.+.|++. + ... ...+.++|+.++... +..++.+.|.++||.+.++. .
T Consensus 281 ~~~~~~~~~~~~~~~l~~~L~~~---~----~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~~~gi~v~~g~~f~~~~~ 350 (376)
T 2dou_A 281 VVRGYARVYRERALGMAEALKGV---L----SLLPPRATMYLWGRLPEGV---DDLEFGLRLVERGVALAPGRGFGPGGK 350 (376)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTT---S----EECCCCBSSEEEEECCTTC---CHHHHHHHHHHTTEECEEGGGGCGGGT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh---c----CccCCCeeEEEEEECCCCC---CHHHHHHHHHHCCEEEcCchhhCCCCC
Confidence 123334444444444444332 1 111 223567888886543 56789999999999998752 5
Q ss_pred CEEEEecCCCCCHHHHHHHHHHHHHHH
Q 017259 319 TIVRLTPPLSISSNELQEGSKALHDVL 345 (374)
Q Consensus 319 ~~lRi~~~~~~~~e~i~~~~~~l~~~~ 345 (374)
+++||+++ .+++++++++++|++++
T Consensus 351 ~~~Ris~~--~~~~~i~~~l~~l~~~l 375 (376)
T 2dou_A 351 GFVRIALV--RPLEELLEAAKRIREAL 375 (376)
T ss_dssp TEEEEECC--SCHHHHHHHHHHHHHTC
T ss_pred CeEEEEec--CCHHHHHHHHHHHHHHh
Confidence 89999966 38899999999998764
No 64
>1v2d_A Glutamine aminotransferase; PLP, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.90A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1v2e_A* 1v2f_A*
Probab=99.97 E-value=3e-30 Score=241.56 Aligned_cols=285 Identities=19% Similarity=0.181 Sum_probs=209.3
Q ss_pred CcHHHHHHHHhcccCC--CeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccCCccccc
Q 017259 21 DKFPVFAERLTSMFGY--DMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIR 98 (374)
Q Consensus 21 ~~~~~l~~~l~~~~~~--~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~ 98 (374)
....++++.++++++. +++++++||++|++.+++.+ ..+| |+|++.+|+||+....+...+..
T Consensus 61 ~~~~~l~~~la~~~~~~~~~v~~~~g~~~a~~~~~~~~-----~~~g-----d~Vl~~~~~~~~~~~~~~~~g~~----- 125 (381)
T 1v2d_A 61 AGLPALREALAEEFAVEPESVVVTSGATEALYVLLQSL-----VGPG-----DEVVVLEPFFDVYLPDAFLAGAK----- 125 (381)
T ss_dssp TCCHHHHHHHHHHHTSCGGGEEEESSHHHHHHHHHHHH-----CCTT-----CEEEEEESCCTTHHHHHHHTTCE-----
T ss_pred CCCHHHHHHHHHhcCCChhhEEEcCChHHHHHHHHHHh-----CCCC-----CEEEEcCCCchhHHHHHHHcCCE-----
Confidence 3578899999998865 48999999999999999988 4567 99999999999876544332211
Q ss_pred cCCCCCCCceeccC--------CCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEecc
Q 017259 99 GFGPLLPGHLKVDF--------GDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEI 170 (374)
Q Consensus 99 ~~~~~~~~~~~~~~--------~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea 170 (374)
+..++. .|+++++++++ ++++++++++++|++|.+. +.+.+++|.++|++||+++|+||+
T Consensus 126 --------~~~v~~~~~~~~~~~d~~~l~~~l~---~~~~~v~~~~~~nptG~~~-~~~~l~~i~~~~~~~~~~li~De~ 193 (381)
T 1v2d_A 126 --------ARLVRLDLTPEGFRLDLSALEKALT---PRTRALLLNTPMNPTGLVF-GERELEAIARLARAHDLFLISDEV 193 (381)
T ss_dssp --------EEEEECEEETTEEECCHHHHHTTCC---TTEEEEEEESSCTTTCCCC-CHHHHHHHHHHHHHTTCEEEEECT
T ss_pred --------EEEEeCCCCCccCCcCHHHHHHhcC---cCCEEEEECCCCCCCCCcc-CHHHHHHHHHHHHHcCCEEEEEcC
Confidence 111111 27899988875 5789999999999999876 689999999999999999999999
Q ss_pred ccCCcccccC-cccc--cCCCCCcEEEeccccc-CCccchhhheeCHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHh
Q 017259 171 QSGLARSGRM-LASD--WEEVRPDMVILGKALG-GGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIR 246 (374)
Q Consensus 171 ~~~~~~~g~~-~~~~--~~~~~~d~~s~sK~~~-~G~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~al~~~~ 246 (374)
|+++.+ |.. .... ..+..+.+.|+||.++ +|+ |+||+++++++.+.+.......+++.+++++.++.++++...
T Consensus 194 ~~~~~~-g~~~~~~~~~~~~~~~~~~s~sK~~~~~G~-r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~ 271 (381)
T 1v2d_A 194 YDELYY-GERPRRLREFAPERTFTVGSAGKRLEATGY-RVGWIVGPKEFMPRLAGMRQWTSFSAPTPLQAGVAEALKLAR 271 (381)
T ss_dssp TTTCBS-SSCCCCHHHHCTTTEEEEEEHHHHTTCGGG-CCEEEECCTTTHHHHHHHHHHHTSSCCHHHHHHHHHHHHHHH
T ss_pred cccccc-CCCCCCHHHhcCCCEEEEeechhhcCCccc-ceEEEEeCHHHHHHHHHHHhhcccCCCcHHHHHHHHHHhCcc
Confidence 998754 321 1111 2344455669999998 688 999999998888877654344467788999999998888652
Q ss_pred --h--hcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCchhHHHHHHHHHHCCeEeccC------
Q 017259 247 --D--EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPT------ 316 (374)
Q Consensus 247 --~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~------ 316 (374)
+ ++..++++++.+++.+.|++. ++.......+.++|+.++.. + +.+.|.++||.+.++
T Consensus 272 ~~~~~~~~~~~~~~~~~~l~~~L~~~-----g~~~~~~~~~~~~~~~~~~~----~---~~~~l~~~gi~v~~g~~~~~~ 339 (381)
T 1v2d_A 272 REGFYEALREGYRRRRDLLAGGLRAM-----GLRVYVPEGTYFLMAELPGW----D---AFRLVEEARVALIPASAFYLE 339 (381)
T ss_dssp HTTHHHHHHHHHHHHHHHHHHHHHHT-----TCCEECCSBSSEEEEECTTC----C---HHHHHHHTCEECEEGGGGCSS
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHC-----CCEecCCCcceEEEEecChH----h---HHHHHHhCCEEEecchHhCCC
Confidence 2 245566666666776666653 22211222356777777542 2 667778899999874
Q ss_pred --CCCEEEEecCCCCCHHHHHHHHHHHHHHHhccC
Q 017259 317 --HDTIVRLTPPLSISSNELQEGSKALHDVLELDL 349 (374)
Q Consensus 317 --~~~~lRi~~~~~~~~e~i~~~~~~l~~~~~~~~ 349 (374)
..+++||+++. +++++++++++|+++++ +.
T Consensus 340 ~~~~~~iRi~~~~--~~~~i~~~~~~l~~~l~-~~ 371 (381)
T 1v2d_A 340 DPPKDLFRFAFCK--TEEELHLALERLGRVVN-SP 371 (381)
T ss_dssp SCCTTEEEEECCS--CHHHHHHHHHHHHHHC----
T ss_pred CCCCCEEEEEeCC--CHHHHHHHHHHHHHHHh-hc
Confidence 25799999765 89999999999999987 54
No 65
>2o1b_A Aminotransferase, class I; aminotrasferase; HET: PLP; 1.95A {Staphylococcus aureus}
Probab=99.97 E-value=9.4e-31 Score=246.96 Aligned_cols=293 Identities=13% Similarity=0.133 Sum_probs=208.1
Q ss_pred cHHHHHHHHhccc----CC-----CeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccC
Q 017259 22 KFPVFAERLTSMF----GY-----DMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSC 92 (374)
Q Consensus 22 ~~~~l~~~l~~~~----~~-----~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~ 92 (374)
...++++.+++++ |. +++++++|+++|++.+++++ ..+| |+|++..|+|++....+...+.
T Consensus 86 g~~~lr~~ia~~~~~~~g~~~~~~~~v~~t~G~~~al~~~~~~l-----~~~g-----d~Vl~~~p~y~~~~~~~~~~g~ 155 (404)
T 2o1b_A 86 GKEAFKQAIVDFYQRQYNVTLDKEDEVCILYGTKNGLVAVPTCV-----INPG-----DYVLLPDPGYTDYLAGVLLADG 155 (404)
T ss_dssp CCHHHHHHHHHHHHHHHCCCCCTTTSEEEESSHHHHHHHHHHHH-----CCTT-----CEEEEEESCCSSHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHHHHhCCCCCCcccEEEcCCcHHHHHHHHHHh-----cCCC-----CEEEEcCCCchhHHHHHHHCCC
Confidence 4556666666654 63 58999999999999999988 5567 9999999999998766544332
Q ss_pred CccccccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEecccc
Q 017259 93 DNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQS 172 (374)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~ 172 (374)
..... ...+ .+.. .|+++|+++++ ++++++++++++|++|.+. +.+++++|.++|++||++||+||+|+
T Consensus 156 ~~~~v-~~~~--~~~~----~d~~~l~~~l~---~~~~~v~l~~p~nptG~~~-~~~~l~~l~~~~~~~~~~li~De~~~ 224 (404)
T 2o1b_A 156 KPVPL-NLEP--PHYL----PDWSKVDSQII---DKTKLIYLTYPNNPTGSTA-TKEVFDEAIAKFKGTDTKIVHDFAYG 224 (404)
T ss_dssp EEEEE-ECCT--TTCC----CCGGGSCHHHH---HHEEEEEECSSCTTTCCCC-CHHHHHHHHHHHTTSSCEEEEECTTT
T ss_pred EEEEe-ccCc--ccCc----CCHHHHHHhhc---cCceEEEEcCCCCCCCccC-CHHHHHHHHHHHHHcCCEEEEEccch
Confidence 21111 1100 0100 26888888886 4688999888888888776 78999999999999999999999999
Q ss_pred CCcccccCcccccC----CCCCcEEEeccccc-CCccchhhheeCHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHhh
Q 017259 173 GLARSGRMLASDWE----EVRPDMVILGKALG-GGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRD 247 (374)
Q Consensus 173 ~~~~~g~~~~~~~~----~~~~d~~s~sK~~~-~G~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~al~~~~~ 247 (374)
++.+.|........ +....+.|+||.++ +|+ |+||+++++++.+.+.......+++.+.+++.++.++++....
T Consensus 225 ~~~~~g~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~-r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~ 303 (404)
T 2o1b_A 225 AFGFDAKNPSILASENGKDVAIEIYSLSKGYNMSGF-RVGFAVGNKDMIQALKKYQTHTNAGMFGALQDAAIYALNHYDD 303 (404)
T ss_dssp TCBSSSCCCCGGGSTTHHHHEEEEEESTTTTTCGGG-CCEEEEECHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCHH
T ss_pred hcccCCCCCChhhcCCCCCCEEEEEecchhccCchh-heEeEecCHHHHHHHHHHHhhccCCCCHHHHHHHHHHHhcCHH
Confidence 87654432222111 11223559999998 798 9999999999888877544445678899999999888875311
Q ss_pred --hcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCchhHHHHHHHHH-HCCeEeccCC------C
Q 017259 248 --EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMK-ERGILAKPTH------D 318 (374)
Q Consensus 248 --~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~-~~Gi~v~~~~------~ 318 (374)
++..++++++.+++.+.|++. ++.......+.++|+.++... +..++++.|+ ++||.+.++. .
T Consensus 304 ~~~~~~~~~~~~~~~l~~~L~~~-----g~~~~~~~~g~~~~~~~~~~~---~~~~l~~~l~~~~gi~v~~g~~f~~~~~ 375 (404)
T 2o1b_A 304 FLEEQSNVFKTRRDRFEAMLAKA-----DLPFVHAKGGIYVWLETPPGY---DSEQFEQFLVQEKSILVAPGKPFGENGN 375 (404)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHT-----TCCEECCCBSSEEEEECCTTC---CHHHHHHHHHHHHCEECEESGGGCGGGT
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc-----CCeecCCCcceEEEEeCCCCC---CHHHHHHHHHHHCCEEEeCchhhCcCCC
Confidence 234455555666666666553 221111223556788876433 5778999988 5799998752 5
Q ss_pred CEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 017259 319 TIVRLTPPLSISSNELQEGSKALHDVLE 346 (374)
Q Consensus 319 ~~lRi~~~~~~~~e~i~~~~~~l~~~~~ 346 (374)
+++||+++. +++++++++++|+++++
T Consensus 376 ~~iRis~~~--~~e~l~~~l~~l~~~l~ 401 (404)
T 2o1b_A 376 RYVRISLAL--DDQKLDEAAIRLTELAY 401 (404)
T ss_dssp TEEEEECCS--CTTHHHHHHHHHHGGGG
T ss_pred CeEEEEEcC--CHHHHHHHHHHHHHHHH
Confidence 799999774 78899999999998887
No 66
>3fvs_A Kynurenine--oxoglutarate transaminase 1; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: LLP; 1.50A {Homo sapiens} SCOP: c.67.1.1 PDB: 3fvu_A* 3fvx_A* 1w7l_A* 1w7m_A* 1w7n_A*
Probab=99.97 E-value=2.3e-30 Score=245.51 Aligned_cols=307 Identities=15% Similarity=0.151 Sum_probs=207.8
Q ss_pred CcHHHHHHHHhcccCC-----CeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccCCcc
Q 017259 21 DKFPVFAERLTSMFGY-----DMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNE 95 (374)
Q Consensus 21 ~~~~~l~~~l~~~~~~-----~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~ 95 (374)
++++.+++.+.+.+|. +++++|+|+++|++.+++.+ ..+| |+|++..|+|+++.......+....
T Consensus 71 ~lr~~la~~~~~~~g~~~~~~~~i~~~~g~~~a~~~~~~~~-----~~~g-----d~vl~~~p~~~~~~~~~~~~g~~~~ 140 (422)
T 3fvs_A 71 PLTKILASFFGELLGQEIDPLRNVLVTVGGYGALFTAFQAL-----VDEG-----DEVIIIEPFFDCYEPMTMMAGGRPV 140 (422)
T ss_dssp HHHHHHHHHHHHHHTCCCCHHHHEEEESHHHHHHHHHHHHH-----CCTT-----CEEEEEESCCTTHHHHHHHTTCEEE
T ss_pred HHHHHHHHHHHHhhCCCCCCCCcEEEECChHHHHHHHHHHH-----cCCC-----CEEEEcCCCchhhHHHHHHcCCEEE
Confidence 3344455555544332 58999999999999999988 5667 9999999999987665544433221
Q ss_pred ccccCCCCC-CCc---eeccC-CCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEecc
Q 017259 96 AIRGFGPLL-PGH---LKVDF-GDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEI 170 (374)
Q Consensus 96 ~~~~~~~~~-~~~---~~~~~-~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea 170 (374)
... ..+.. .+. ....+ .|+++++++++ ++++++++++++|++|.+. +++.+++|.++|++||+++|+||+
T Consensus 141 ~~~-~~~~~~~~G~~~~~~~~~~d~~~l~~~~~---~~~~~v~~~~p~nptG~~~-~~~~l~~i~~~~~~~~~~li~De~ 215 (422)
T 3fvs_A 141 FVS-LKPGPIQNGELGSSSNWQLDPMELAGKFT---SRTKALVLNTPNNPLGKVF-SREELELVASLCQQHDVVCITDEV 215 (422)
T ss_dssp EEE-CBCCCCCSSSCCBGGGSBCCHHHHHTTCC---TTEEEEEEESSCTTTCCCC-CHHHHHHHHHHHHHHTCEEEEECT
T ss_pred EEe-cccccccccccccccCCCCCHHHHHhhcC---CCceEEEECCCCCCCCcCC-CHHHHHHHHHHHHHcCcEEEEEcc
Confidence 111 10000 000 00001 27888888876 5789999999999999887 799999999999999999999999
Q ss_pred ccCCcccccC-cccccCC----CCCcEEEeccccc-CCccchhhheeCHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHH
Q 017259 171 QSGLARSGRM-LASDWEE----VRPDMVILGKALG-GGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDV 244 (374)
Q Consensus 171 ~~~~~~~g~~-~~~~~~~----~~~d~~s~sK~~~-~G~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~al~~ 244 (374)
|+++.+.|.. ....... ....+.|+||.++ +|+ |+||+++++++++.+.......+++.+++++.++.++++.
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~g~~G~-r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~ 294 (422)
T 3fvs_A 216 YQWMVYDGHQHISIASLPGMWERTLTIGSAGKTFSATGW-KVGWVLGPDHIMKHLRTVHQNSVFHCPTQSQAAVAESFER 294 (422)
T ss_dssp TTTCBCTTCCCCCGGGSTTTGGGEEEEEEHHHHHTCGGG-CCEEEECCHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHH
T ss_pred chhhccCCCCCCChhhcccccCcEEEEecchhccCCccc-eEEEEEeCHHHHHHHHHHHhhccCCCCcHHHHHHHHHHhh
Confidence 9988666642 1222221 1233458999998 799 9999999999888887655566788899999999988875
Q ss_pred H-----hhhcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCc----------hhHHHHHHHHHH-
Q 017259 245 I-----RDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALP----------VSAYDICLKMKE- 308 (374)
Q Consensus 245 ~-----~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~----------~~~~~~~~~l~~- 308 (374)
. ..+++.++.++..+..++.+.+....+ ++....+..+.++|+.++..... ....++++.|++
T Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ 373 (422)
T 3fvs_A 295 EQLLFRQPSSYFVQFPQAMQRCRDHMIRSLQSV-GLKPIIPQGSYFLITDISDFKRKMPDLPGAVDEPYDRRFVKWMIKN 373 (422)
T ss_dssp HHHTTTCTTCHHHHHHHHHHHHHHHHHHHHHTT-TCEEEBCSBSSEEEEECHHHHHHCCCCCCCTTCCHHHHHHHHHHHH
T ss_pred ccccccchHHHHHHHHHHHHHHHHHHHHHHHHc-CCeecCCCeeeEEEEechhhcccccccccccccccHHHHHHHHHHh
Confidence 1 112334444444444444443333332 23323345577778776431000 005578888665
Q ss_pred CCeEeccC-----------CCCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 017259 309 RGILAKPT-----------HDTIVRLTPPLSISSNELQEGSKALHDVLE 346 (374)
Q Consensus 309 ~Gi~v~~~-----------~~~~lRi~~~~~~~~e~i~~~~~~l~~~~~ 346 (374)
+||.+.++ ..+++||++. .+++++++++++|+++++
T Consensus 374 ~gv~v~~g~~f~~~~~~~~~~~~iRis~~--~~~e~i~~~l~~l~~~l~ 420 (422)
T 3fvs_A 374 KGLVAIPVSIFYSVPHQKHFDHYIRFCFV--KDEATLQAMDEKLRKWKV 420 (422)
T ss_dssp HCEECEEGGGGSCHHHHTTSCSEEEEECC--CCHHHHHHHHHHHHHHHH
T ss_pred cCEEEeCcHHhcCCcCCCCCCCeEEEEec--CCHHHHHHHHHHHHHHHh
Confidence 69999873 2589999954 599999999999999987
No 67
>3kki_A CAI-1 autoinducer synthase; quorum sensing, CQSA, P virulence, acyltransferase, aminotransferase, pyridoxal PHO transferase; HET: PLP; 1.80A {Vibrio cholerae} PDB: 3hqt_A* 2wk9_A* 2wk8_A* 2wka_A* 2wk7_A
Probab=99.97 E-value=2.4e-30 Score=244.48 Aligned_cols=304 Identities=14% Similarity=0.141 Sum_probs=226.8
Q ss_pred hHHHHHHHhccc---cC--cCCCCCcHHHHHHHHhcccCCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEe
Q 017259 2 KALQEQAEKLTL---SS--RAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSC 76 (374)
Q Consensus 2 ~a~~~~~~~~~~---~~--~~~~~~~~~~l~~~l~~~~~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~ 76 (374)
+|+.+++.+... .+ ..+..+..++++++++++++.+..++++||++|+..+++++ .++| |.|++.
T Consensus 80 ~a~~~~l~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~g~~~~i~~~sGt~a~~~~l~~~-----~~~g-----d~Vl~~ 149 (409)
T 3kki_A 80 ARLAKSLLEEQQSLFMSASFLQNDYDKPMIEKRLAKFTGFDECLLSQSGWNANVGLLQTI-----CQPN-----TNVYID 149 (409)
T ss_dssp HHHHHHHHSCCCCCCSBGGGGCSTTTSCHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHH-----CCTT-----CEEEEE
T ss_pred HHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHHHHhCCCeEEEecchHHHHHHHHHHh-----cCCC-----CEEEEC
Confidence 566667765321 11 12445778899999999999998889999999999999987 5677 999999
Q ss_pred ccCCCCcccccccccCCccccccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHH
Q 017259 77 CGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRD 156 (374)
Q Consensus 77 ~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~ 156 (374)
+++|........ ..+ ..+..++..|+++|+++++++ +++++++++++|++|.+.+ +++|.+
T Consensus 150 ~~~~~~~~~~~~-~~g------------~~~~~~~~~d~~~le~~l~~~--~~~~vi~~~~~nptG~~~~----l~~l~~ 210 (409)
T 3kki_A 150 FFAHMSLWEGAR-YAN------------AQAHPFMHNNCDHLRMLIQRH--GPGIIVVDSIYSTLGTIAP----LAELVN 210 (409)
T ss_dssp TTSCHHHHHHHH-HTT------------CEEEEECTTCHHHHHHHHHHH--CSCEEEEESBCTTTCCBCC----HHHHHH
T ss_pred CCcCHHHHHHHH-HcC------------CeEEEecCCCHHHHHHHHHhc--CCeEEEECCCCCCCCCcCC----HHHHHH
Confidence 998755433322 221 123334446899999999864 4689999999999999988 999999
Q ss_pred HHHhcCCEEEEeccccC--CcccccCcccccCCC--CCcE--EEecccccCCccchhhheeCHHHHhhcCCCCCC--CCC
Q 017259 157 LCSKYNILMIADEIQSG--LARSGRMLASDWEEV--RPDM--VILGKALGGGVIPVSAVLADKEVMLCIQPGEHG--STF 228 (374)
Q Consensus 157 l~~~~~i~li~Dea~~~--~~~~g~~~~~~~~~~--~~d~--~s~sK~~~~G~~~~G~~~~~~~~~~~~~~~~~~--~~~ 228 (374)
+|++||++||+||+|++ +++.|..+. ...+. .+|+ .|+||++++| +|++++++++.+.+...... .+.
T Consensus 211 la~~~~~~li~De~~~~g~~g~~g~~~~-~~~~~~~~~di~~~s~sK~~~~~---gg~v~~~~~~~~~~~~~~~~~~~~~ 286 (409)
T 3kki_A 211 ISKEFGCALLVDESHSLGTHGPNGAGLL-AELGLTREVHFMTASLAKTFAYR---AGAIWCNNEVNRCVPFISYPAIFSS 286 (409)
T ss_dssp HHHHHTCEEEEECTTTTTTSSGGGCCHH-HHHTCGGGCSEEEEESSSTTCSS---CEEEEESSSGGGTHHHHCHHHHHSB
T ss_pred HHHHcCCEEEEECCccccccCCCCCcch-hhcCCCCCCCEEEeecchhhCCC---ceEEEECHHHHHHHHHhCcCccccC
Confidence 99999999999999996 666665433 22333 4565 5899999855 47888888887776542221 223
Q ss_pred CCCHHHHHHHHHHHHHHhhh-cHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCchhHHHHHHHHH
Q 017259 229 GGNPLASAVAIASLDVIRDE-KLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMK 307 (374)
Q Consensus 229 ~~~~~~~~aa~~al~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~ 307 (374)
..+++.++++.++++.+... ++.++++++.+++.+.|+++. + . ..+.+.++++.++... +..++.+.|.
T Consensus 287 ~~~~~~~aa~~aal~~~~~~~~~~~~~~~~~~~l~~~L~~~g--~---~--~~~~~~~~~~~~~~~~---~~~~~~~~L~ 356 (409)
T 3kki_A 287 TLLPYEAAGLETTLEIIESADNRRQHLDRMARKLRIGLSQLG--L---T--IRSESQIIGLETGDER---NTEKVRDYLE 356 (409)
T ss_dssp CCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTT--C---C--CCCSSSEEEEEEESHH---HHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHcC--C---c--cCCCCCEEEEEeCCHH---HHHHHHHHHH
Confidence 46778888899999887553 667788888888888887652 1 1 1146778888776532 5678999999
Q ss_pred HCCeEecc-------CCCCEEEEecCCCCCHHHHHHHHHHHHHHHhccC
Q 017259 308 ERGILAKP-------THDTIVRLTPPLSISSNELQEGSKALHDVLELDL 349 (374)
Q Consensus 308 ~~Gi~v~~-------~~~~~lRi~~~~~~~~e~i~~~~~~l~~~~~~~~ 349 (374)
++||.+.+ .+.+++||+++..++++++++++++|+++++ ..
T Consensus 357 ~~Gv~v~~~~~~~~~~~~~~iRi~~~~~~t~e~i~~~~~~l~~~l~-~~ 404 (409)
T 3kki_A 357 SNGVFGSVFCRPATSKNKNIIRLSLNSDVNDEQIAKIIEVCSDAVN-YG 404 (409)
T ss_dssp HTTEECEEECTTSSCTTCEEEEEECCTTCCHHHHHHHHHHHHHHHH-HS
T ss_pred HCCceEeeeCCCCcCCCCcEEEEEccCCCCHHHHHHHHHHHHHHHh-cC
Confidence 99999954 2358999999989999999999999999998 53
No 68
>1c7n_A Cystalysin; transferase, aminotransferase, pyridoxal phosphate; HET: PLP; 1.90A {Treponema denticola} SCOP: c.67.1.3 PDB: 1c7o_A*
Probab=99.97 E-value=4e-30 Score=242.09 Aligned_cols=298 Identities=14% Similarity=0.109 Sum_probs=205.4
Q ss_pred HHHHHHHHhcc----cC----CCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccCCc
Q 017259 23 FPVFAERLTSM----FG----YDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDN 94 (374)
Q Consensus 23 ~~~l~~~l~~~----~~----~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~~~ 94 (374)
..++++.++++ +| .+++++|+|+++|++.+++++ ..+| |+|++..|+||+....+...+...
T Consensus 68 ~~~l~~~la~~l~~~~g~~~~~~~v~~t~g~~~a~~~~~~~l-----~~~g-----d~vl~~~p~~~~~~~~~~~~g~~~ 137 (399)
T 1c7n_A 68 TEEYKKTVKKWMKDRHQWDIQTDWIINTAGVVPAVFNAVREF-----TKPG-----DGVIIITPVYYPFFMAIKNQERKI 137 (399)
T ss_dssp CHHHHHHHHHHHHHHHCCCCCGGGEEEESSHHHHHHHHHHHH-----CCTT-----CEEEECSSCCTHHHHHHHTTTCEE
T ss_pred cHHHHHHHHHHHHHHhCCCCChhhEEEcCCHHHHHHHHHHHh-----cCCC-----CEEEEcCCCcHhHHHHHHHcCCEE
Confidence 45555555554 34 568999999999999999988 4567 999999999999776554433211
Q ss_pred cccccCCCCC-CCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEeccccC
Q 017259 95 EAIRGFGPLL-PGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSG 173 (374)
Q Consensus 95 ~~~~~~~~~~-~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~~ 173 (374)
.. .+.. .+.. .. .|+++|++++++ ++++++++++++|++|.+. +++++++|.++|++||++||+||+|++
T Consensus 138 ~~----~~~~~~~g~-~~-~d~~~l~~~l~~--~~~~~v~~~~~~nptG~~~-~~~~l~~i~~~~~~~~~~li~De~~~~ 208 (399)
T 1c7n_A 138 IE----CELLEKDGY-YT-IDFQKLEKLSKD--KNNKALLFCSPHNPVGRVW-KKDELQKIKDIVLKSDLMLWSDEIHFD 208 (399)
T ss_dssp EE----CCCEEETTE-EE-CCHHHHHHHHTC--TTEEEEEEESSBTTTTBCC-CHHHHHHHHHHHHHSSCEEEEECTTTT
T ss_pred Ee----cccccCCCC-EE-EcHHHHHHHhcc--CCCcEEEEcCCCCCCCcCc-CHHHHHHHHHHHHHcCCEEEEEccccc
Confidence 11 1110 0000 00 379999999873 3688888888888899776 799999999999999999999999998
Q ss_pred CcccccC-cccccC-----CCCCcEEEeccccc-CCccchhhheeC-HHHHhhcCCCCCCCCC-CCCHHHHHHHHHHHHH
Q 017259 174 LARSGRM-LASDWE-----EVRPDMVILGKALG-GGVIPVSAVLAD-KEVMLCIQPGEHGSTF-GGNPLASAVAIASLDV 244 (374)
Q Consensus 174 ~~~~g~~-~~~~~~-----~~~~d~~s~sK~~~-~G~~~~G~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~aa~~al~~ 244 (374)
+.+.|.. .....+ +....+.|+||.++ +|+ |+||++++ +++.+.+.......++ +.+++++.++.++++.
T Consensus 209 ~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~-r~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~l~~ 287 (399)
T 1c7n_A 209 LIMPGYEHTVFQSIDEQLADKTITFTAPSKTFNIAGM-GMSNIIIKNPDIRERFTKSRDATSGMPFTTLGYKACEICYKE 287 (399)
T ss_dssp CBCTTCCCCCGGGSCHHHHTTEEEEECSHHHHTCGGG-CCEEEECCCHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHH
T ss_pred cccCCCCcccHHHcCccccCcEEEEEeChhhccccch-heEEEEECCHHHHHHHHHHHhhcccCCCCHHHHHHHHHHHhC
Confidence 8665532 222211 11223458899998 798 99999986 5687777654333333 5689999988888875
Q ss_pred Hhh--hcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEe-eeEEEEeccC-CCchhHHHHHHHHH-HCCeEeccC---
Q 017259 245 IRD--EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRG-LFNAVEFDKT-ALPVSAYDICLKMK-ERGILAKPT--- 316 (374)
Q Consensus 245 ~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g-~~~~~~~~~~-~~~~~~~~~~~~l~-~~Gi~v~~~--- 316 (374)
..+ +...++++++.+++.+.|++. +|++ ....+.+ .+.|+.++.. . +..++.+.|+ ++||.+.++
T Consensus 288 ~~~~~~~~~~~~~~~~~~l~~~L~~~---~~~~-~~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~~~~gi~v~~g~~~ 360 (399)
T 1c7n_A 288 CGKWLDGCIKVIDKNQRIVKDFFEVN---HPEI-KAPLIEGTYLQWIDFRALKM---DHKAMEEFMIHKAQIFFDEGYIF 360 (399)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHH---CTTS-BCCCCSBSSEEEEECGGGCC---CHHHHHHHHHHTTCCCCEEGGGG
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHhh---CCCC-eEecCCceEEEEEEcccCCC---CHHHHHHHHHHhCCEEEeCcccc
Confidence 311 133444555555555555442 3332 2223344 4456777642 2 5778999998 689999875
Q ss_pred ---CCCEEEEecCCCCCHHHHHHHHHHHHHHHhccCC
Q 017259 317 ---HDTIVRLTPPLSISSNELQEGSKALHDVLELDLP 350 (374)
Q Consensus 317 ---~~~~lRi~~~~~~~~e~i~~~~~~l~~~~~~~~~ 350 (374)
..+++||+++. .++++++++++|+++++ ++.
T Consensus 361 ~~~~~~~iRis~~~--~~~~l~~~l~~l~~~l~-~~~ 394 (399)
T 1c7n_A 361 GDGGIGFERINLAA--PSSVIQESLERLNKALK-DLK 394 (399)
T ss_dssp CGGGTTEEEEECCS--CHHHHHHHHHHHHHHHH-HHC
T ss_pred CCCCCCeEEEEecc--CHHHHHHHHHHHHHHHH-HHH
Confidence 25799999764 48899999999999998 653
No 69
>3h14_A Aminotransferase, classes I and II; YP_167802.1, SPO258 structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.90A {Silicibacter pomeroyi dss-3}
Probab=99.97 E-value=1.8e-30 Score=243.85 Aligned_cols=286 Identities=11% Similarity=0.152 Sum_probs=204.7
Q ss_pred HHHHHHHHhccc--------CCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccCCc
Q 017259 23 FPVFAERLTSMF--------GYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDN 94 (374)
Q Consensus 23 ~~~l~~~l~~~~--------~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~~~ 94 (374)
..++++.+++++ ..+++++|+||++|++.+++.+ .++| |+|++..|+|++....+...+..
T Consensus 70 ~~~lr~~ia~~~~~~~g~~~~~~~v~~t~g~~~al~~~~~~l-----~~~g-----d~vl~~~p~~~~~~~~~~~~g~~- 138 (391)
T 3h14_A 70 LPALRQRIARLYGEWYGVDLDPGRVVITPGSSGGFLLAFTAL-----FDSG-----DRVGIGAPGYPSYRQILRALGLV- 138 (391)
T ss_dssp CHHHHHHHHHHHHHHHCCCCCGGGEEEESSHHHHHHHHHHHH-----CCTT-----CEEEEEESCCHHHHHHHHHTTCE-
T ss_pred hHHHHHHHHHHHHHHhCCCCCHHHEEEecChHHHHHHHHHHh-----cCCC-----CEEEEcCCCCccHHHHHHHcCCE-
Confidence 445555555543 4568999999999999999988 5677 99999999998876555443322
Q ss_pred cccccCCCCCCCceeccCC-------CHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEE
Q 017259 95 EAIRGFGPLLPGHLKVDFG-------DITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIA 167 (374)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~-------d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~ 167 (374)
+..++++ |+++++++ +++++++++++|++|.+. +.+.+++|.++|++||+++|+
T Consensus 139 ------------~~~v~~~~~~~~~~d~~~l~~~------~~~~v~i~~p~nptG~~~-~~~~l~~l~~~~~~~~~~li~ 199 (391)
T 3h14_A 139 ------------PVDLPTAPENRLQPVPADFAGL------DLAGLMVASPANPTGTML-DHAAMGALIEAAQAQGASFIS 199 (391)
T ss_dssp ------------EEEEECCGGGTTSCCHHHHTTS------CCSEEEEESSCTTTCCCC-CHHHHHHHHHHHHHTTCEEEE
T ss_pred ------------EEEeecCcccCCCCCHHHHHhc------CCeEEEECCCCCCCCccC-CHHHHHHHHHHHHHcCCEEEE
Confidence 1222221 67776654 577888888889999877 788999999999999999999
Q ss_pred eccccCCcccccCcccccC-CCCCcEEEeccccc-CCccchhhheeCHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHH
Q 017259 168 DEIQSGLARSGRMLASDWE-EVRPDMVILGKALG-GGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVI 245 (374)
Q Consensus 168 Dea~~~~~~~g~~~~~~~~-~~~~d~~s~sK~~~-~G~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~al~~~ 245 (374)
||+|+++.+.+........ +....+.|+||.++ +|+ |+||+++++++.+.+.......+++.+.+++.++.++++..
T Consensus 200 De~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~-r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~ 278 (391)
T 3h14_A 200 DEIYHGIEYEAKAVTALELTDECYVINSFSKYFSMTGW-RVGWMVVPEDQVRVVERIAQNMFICAPHASQVAALAALDCD 278 (391)
T ss_dssp ECTTTTCBSSSCCCCGGGTCSSSEEEEESSSTTCCTTS-CCEEEECCGGGHHHHHHHHHHTTCCCCHHHHHHHHHHTTCH
T ss_pred ECcchhcccCCCCcChhhcCCCEEEEEechhccCCccc-eeEEEEeCHHHHHHHHHHHhhhccCCCHHHHHHHHHHhCCh
Confidence 9999988666543222222 21222348999998 899 99999999988888876555667788999999888887611
Q ss_pred hh-hcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEE-eeeEEEEecc-CCCchhHHHHHHHHHHC-CeEeccC-----
Q 017259 246 RD-EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGR-GLFNAVEFDK-TALPVSAYDICLKMKER-GILAKPT----- 316 (374)
Q Consensus 246 ~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-g~~~~~~~~~-~~~~~~~~~~~~~l~~~-Gi~v~~~----- 316 (374)
.. ++..++++++.+++.+.|++. +......+. +.++|+.++. .. +..++++.|+++ ||.++++
T Consensus 279 ~~~~~~~~~~~~~~~~l~~~l~~~-----~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~~~~gi~v~~g~~~~~ 350 (391)
T 3h14_A 279 AELQANLDVYKANRKLMLERLPKA-----GFTRIAPPDGAFYVYADVSDLTD---DSRAFAAEILEKAGVAVTPGLDFDP 350 (391)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-----TCCCBCCCCBTTEEEEECTTTCS---CHHHHHHHHHHHHCEECEEGGGTCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHc-----CCCcccCCCeeEEEEEecCccCC---CHHHHHHHHHHHCCEEEcCchhhCC
Confidence 00 134555556666666666554 222222233 4667777754 22 678899998876 9999874
Q ss_pred --CCCEEEEecCCCCCHHHHHHHHHHHHHHHhccCC
Q 017259 317 --HDTIVRLTPPLSISSNELQEGSKALHDVLELDLP 350 (374)
Q Consensus 317 --~~~~lRi~~~~~~~~e~i~~~~~~l~~~~~~~~~ 350 (374)
..+++||+++. +++++++++++|+++++ +..
T Consensus 351 ~~~~~~iRis~~~--~~~~i~~~l~~l~~~~~-~~~ 383 (391)
T 3h14_A 351 ERGAGTLRFSYAR--ATADIEEGLDRLEAFMQ-ARG 383 (391)
T ss_dssp TTGGGEEEEECCS--CHHHHHHHHHHHHHHHH-HC-
T ss_pred CCCCCeEEEEecC--CHHHHHHHHHHHHHHHH-Hhc
Confidence 25799999664 88999999999999998 553
No 70
>1j32_A Aspartate aminotransferase; HET: PLP; 2.10A {Phormidium lapideum} SCOP: c.67.1.1
Probab=99.97 E-value=2.6e-30 Score=242.47 Aligned_cols=293 Identities=14% Similarity=0.143 Sum_probs=204.4
Q ss_pred HHHHHHHHhcccC----CCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccCCccccc
Q 017259 23 FPVFAERLTSMFG----YDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIR 98 (374)
Q Consensus 23 ~~~l~~~l~~~~~----~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~ 98 (374)
.+.+++.+.+.+| .+++++|+|+++|++.+++.+ ..+| |+|++.+|+|++....+...+......
T Consensus 73 ~~~la~~~~~~~g~~~~~~~v~~~~g~~~a~~~~~~~~-----~~~g-----d~vl~~~~~~~~~~~~~~~~g~~~~~v- 141 (388)
T 1j32_A 73 REAIAQKLQRDNGLCYGADNILVTNGGKQSIFNLMLAM-----IEPG-----DEVIIPAPFWVSYPEMVKLAEGTPVIL- 141 (388)
T ss_dssp HHHHHHHHHHHHCCCCCGGGEEEESHHHHHHHHHHHHH-----CCTT-----CEEEEESSCCTHHHHHHHHTTCEEEEE-
T ss_pred HHHHHHHHHHhcCCCCChhhEEEcCCHHHHHHHHHHHh-----cCCC-----CEEEEcCCCChhHHHHHHHcCCEEEEe-
Confidence 3344444443323 468999999999999999988 4567 999999999988765444332211110
Q ss_pred cCCCCCCCceeccC-CCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEeccccCCccc
Q 017259 99 GFGPLLPGHLKVDF-GDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARS 177 (374)
Q Consensus 99 ~~~~~~~~~~~~~~-~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~~~~~~ 177 (374)
+...+ -.+ .|+++|+++++ ++++++++++++|++|.+. +++.+++|.++|++||+++|+||+|+++.+.
T Consensus 142 ---~~~~~---~~~~~d~~~l~~~l~---~~~~~v~~~~p~nptG~~~-~~~~l~~i~~~~~~~~~~li~De~~~~~~~~ 211 (388)
T 1j32_A 142 ---PTTVE---TQFKVSPEQIRQAIT---PKTKLLVFNTPSNPTGMVY-TPDEVRAIAQVAVEAGLWVLSDEIYEKILYD 211 (388)
T ss_dssp ---CCCGG---GTTCCCHHHHHHHCC---TTEEEEEEESSCTTTCCCC-CHHHHHHHHHHHHHHTCEEEEECTTTTCBCT
T ss_pred ---cCCcc---cCCCCCHHHHHHhcC---cCceEEEEeCCCCCCCcCC-CHHHHHHHHHHHHHcCCEEEEEccchhcccC
Confidence 11000 011 27899998886 4789999888888899876 7899999999999999999999999987665
Q ss_pred ccCc-cccc-----CCCCCcEEEeccccc-CCccchhhheeCHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHhh--h
Q 017259 178 GRML-ASDW-----EEVRPDMVILGKALG-GGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRD--E 248 (374)
Q Consensus 178 g~~~-~~~~-----~~~~~d~~s~sK~~~-~G~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~al~~~~~--~ 248 (374)
+..+ .... .+....+.|+||.++ +|+ |+||+++++++.+.+.......+++.+.+++.++.++++...+ +
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~s~sK~~~~~G~-r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~ 290 (388)
T 1j32_A 212 DAQHLSIGAASPEAYERSVVCSGFAKTYAMTGW-RVGFLAGPVPLVKAATKIQGHSTSNVCTFAQYGAIAAYENSQDCVQ 290 (388)
T ss_dssp TCCCCCGGGSCHHHHHTEEEEEESTTTTTCTTT-CCEEEECCHHHHHHHHHHHHTTTCSCCHHHHHHHHHHHHSCSHHHH
T ss_pred CCCCCCHHHccccccCCEEEEeechhccCCccc-ceEEEEeCHHHHHHHHHHHhhcccCCCHHHHHHHHHHHhCCcHHHH
Confidence 5321 1111 223344669999998 788 9999999999888876554556778899999888888863211 2
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEecc-CCCchhHHHHHHHHHH-CCeEeccCC----CCEEE
Q 017259 249 KLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDK-TALPVSAYDICLKMKE-RGILAKPTH----DTIVR 322 (374)
Q Consensus 249 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~~l~~-~Gi~v~~~~----~~~lR 322 (374)
+..++++++.+++.+.|+++ |++.......+.++|+.++. .. +..++.+.|.+ +||.+.++. .+++|
T Consensus 291 ~~~~~~~~~~~~l~~~L~~~----~g~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~~~~gi~v~~g~~~~~~~~iR 363 (388)
T 1j32_A 291 EMLAAFAERRRYMLDALNAM----PGLECPKPDGAFYMFPSIAKTGR---SSLDFCSELLDQHQVATVPGAAFGADDCIR 363 (388)
T ss_dssp HHHHHHHHHHHHHHHHHHTC----TTCBCCCCCBTTEECCBCGGGTC---CHHHHHHHHHHHHCEECEEGGGGTCTTBEE
T ss_pred HHHHHHHHHHHHHHHHHhhC----CCCcccCCCeeEEEEEecCCCCC---CHHHHHHHHHHhCCEEEeChhhhCCCCcEE
Confidence 34455555566665555442 22221112234455555543 22 57889999986 699998753 58999
Q ss_pred EecCCCCCHHHHHHHHHHHHHHHh
Q 017259 323 LTPPLSISSNELQEGSKALHDVLE 346 (374)
Q Consensus 323 i~~~~~~~~e~i~~~~~~l~~~~~ 346 (374)
++++ .+++++++++++|+++++
T Consensus 364 is~~--~~~~~i~~~~~~l~~~l~ 385 (388)
T 1j32_A 364 LSYA--TDLDTIKRGMERLEKFLH 385 (388)
T ss_dssp EECC--SCHHHHHHHHHHHHHHHH
T ss_pred EEec--CCHHHHHHHHHHHHHHHH
Confidence 9965 689999999999999887
No 71
>3ftb_A Histidinol-phosphate aminotransferase; structural genomics, PSI, MCSG, protein structure initiative; 2.00A {Clostridium acetobutylicum} SCOP: c.67.1.0
Probab=99.97 E-value=2.4e-29 Score=233.49 Aligned_cols=300 Identities=14% Similarity=0.115 Sum_probs=214.7
Q ss_pred hHHHHHHHhccccCcCCCCCcHHHHHHHHhcccC--CCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccC
Q 017259 2 KALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFG--YDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGC 79 (374)
Q Consensus 2 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~ 79 (374)
+|+.++++.... |+.+...+++++++++++ .+++++|+|+++|++.+++++ |+|++..|+
T Consensus 46 ~a~~~~~~~~~~----y~~~~~~~l~~~la~~~~~~~~~i~~~~g~t~al~~~~~~~--------------d~vi~~~~~ 107 (361)
T 3ftb_A 46 NNIDEGIKNLGV----YPDVNYRRLNKSIENYLKLKDIGIVLGNGASEIIELSISLF--------------EKILIIVPS 107 (361)
T ss_dssp TTHHHHHHGGGS----CCCTTCHHHHHHHHHHHTCCSCEEEEESSHHHHHHHHHTTC--------------SEEEEEESC
T ss_pred HHHHHHHHHhcC----CCCccHHHHHHHHHHHhCCCcceEEEcCCHHHHHHHHHHHc--------------CcEEEecCC
Confidence 455666655332 345667899999999886 568999999999999988765 789999999
Q ss_pred CCCcccccccccCCccccccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHH
Q 017259 80 FHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCS 159 (374)
Q Consensus 80 yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~ 159 (374)
|++....+...+...... +...+. .-++++++++++ + ++++++++++|++|.+. +.+.+++|+++|+
T Consensus 108 ~~~~~~~~~~~g~~~~~~----~~~~~~----~~~~~~l~~~l~---~-~~~v~i~~p~nptG~~~-~~~~l~~i~~~~~ 174 (361)
T 3ftb_A 108 YAEYEINAKKHGVSVVFS----YLDENM----CIDYEDIISKID---D-VDSVIIGNPNNPNGGLI-NKEKFIHVLKLAE 174 (361)
T ss_dssp CTHHHHHHHHTTCEEEEE----ECCTTS----CCCHHHHHHHTT---T-CSEEEEETTBTTTTBCC-CHHHHHHHHHHHH
T ss_pred hHHHHHHHHHcCCeEEEe----ecCccc----CCCHHHHHHhcc---C-CCEEEEeCCCCCCCCCC-CHHHHHHHHHHhh
Confidence 998766655443222111 110000 015788988887 3 77888888889999877 7888999999999
Q ss_pred hcCCEEEEeccccCCcccccCcccccCCCCCcE---EEeccccc-CCccchhhhe-eCHHHHhhcCCCCCCCCCCCCHHH
Q 017259 160 KYNILMIADEIQSGLARSGRMLASDWEEVRPDM---VILGKALG-GGVIPVSAVL-ADKEVMLCIQPGEHGSTFGGNPLA 234 (374)
Q Consensus 160 ~~~i~li~Dea~~~~~~~g~~~~~~~~~~~~d~---~s~sK~~~-~G~~~~G~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 234 (374)
+||+++|+||+|+++.+.+........+..+++ .|+||.++ +|+ |+||++ .++++.+.+... ..+++.++++
T Consensus 175 ~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~-r~g~~~~~~~~~~~~~~~~--~~~~~~~~~~ 251 (361)
T 3ftb_A 175 EKKKTIIIDEAFIEFTGDPSSSFVGEIKNYSCLFIIRAMTKFFAMPGI-RFGYGITNNKEIAAKIKAK--QNPWNINCFA 251 (361)
T ss_dssp HHTCEEEEECSSGGGTCCTTSSSGGGTTTCSSEEEEEESSSTTSCGGG-CCEEEEESCHHHHHHHHTT--SCTTCSCHHH
T ss_pred hcCCEEEEECcchhhcCCcccchhHhcccCCCEEEEeeChhhcCCCCc-ceeEEEeCCHHHHHHHHhh--CCCCCCCHHH
Confidence 999999999999977553212122222233333 38899998 788 999988 888988888753 3467889999
Q ss_pred HHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHhCCCcee-eEEEEeeeEEEEeccCCCchhHHHHHHHHHHCCeEe
Q 017259 235 SAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVK-EVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILA 313 (374)
Q Consensus 235 ~~aa~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v 313 (374)
++++.++++. .++.++.++.....++.+.+....+| .+. ..++.+.++++.++.. +..++.+.|.++||.+
T Consensus 252 ~~~~~~~l~~---~~~~~~~~~~~~~~~~~l~~~l~~~~-~~~~~~~~~~~~~~~~~~~~----~~~~l~~~l~~~gi~v 323 (361)
T 3ftb_A 252 EMAAINCLKD---TNYIEESLLWIKKERKRFIEELNKIG-FIKRVFSPHANFVLCRLENI----SGEKLYDSLLKEDIVI 323 (361)
T ss_dssp HHHHHHTSSC---HHHHHHHHHHHHHHHHHHHHHHHHSS-SEEEEECCSSSEEEEEESSS----CHHHHHHHHHTTTEEC
T ss_pred HHHHHHHhcC---HHHHHHHHHHHHHHHHHHHHHHHhCC-CCceecCCCCeEEEEEcCCC----CHHHHHHHHHHCCeEE
Confidence 9998888763 23334444444444444444333443 333 4556788888888763 6789999999999999
Q ss_pred ccCC------CCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 017259 314 KPTH------DTIVRLTPPLSISSNELQEGSKALHDVLE 346 (374)
Q Consensus 314 ~~~~------~~~lRi~~~~~~~~e~i~~~~~~l~~~~~ 346 (374)
+++. .+++|++++ +.++++++++.|+++.+
T Consensus 324 ~~g~~~~~~~~~~iRis~~---~~~~~~~l~~~l~~~~~ 359 (361)
T 3ftb_A 324 RRCCNFIGLDDSFVRFAIK---DEKKNTKFLRALKGVEN 359 (361)
T ss_dssp EECTTSTTCCTTEEEEECC---CHHHHHHHHHHHHHHHH
T ss_pred eeCccCCCCCCCEEEEEcC---CHHHHHHHHHHHHHHHh
Confidence 8853 589999954 88889999999988776
No 72
>3piu_A 1-aminocyclopropane-1-carboxylate synthase; fruit ripening, ethylene biosynthesis, lyase, pyridoxal 5'-P binding; HET: LLP PLR; 1.35A {Malus domestica} SCOP: c.67.1.4 PDB: 1m4n_A* 1m7y_A* 1ynu_A* 1b8g_A*
Probab=99.97 E-value=5.1e-30 Score=244.26 Aligned_cols=297 Identities=16% Similarity=0.113 Sum_probs=205.5
Q ss_pred CcHHHHHHHHhcccC----------CCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccc
Q 017259 21 DKFPVFAERLTSMFG----------YDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISM 90 (374)
Q Consensus 21 ~~~~~l~~~l~~~~~----------~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~ 90 (374)
....++++.++++++ .+++++++||++|++.+++++ .++| |.|++.+|+|++........
T Consensus 86 ~g~~~l~~~la~~~~~~~~~~~~~~~~~v~~~~gg~~a~~~~~~~l-----~~~g-----d~vl~~~p~~~~~~~~~~~~ 155 (435)
T 3piu_A 86 HGLPAFKKAMVDFMAEIRGNKVTFDPNHLVLTAGATSANETFIFCL-----ADPG-----EAVLIPTPYYPGFDRDLKWR 155 (435)
T ss_dssp TCCHHHHHHHHHHHHHHTTTSSCCCGGGEEEEEHHHHHHHHHHHHH-----CCTT-----CEEEEEESCCTTHHHHTTTT
T ss_pred CCcHHHHHHHHHHHHHhhCCCCCCCHHHEEEcCChHHHHHHHHHHh-----cCCC-----CeEEECCCccccHHHHHHHh
Confidence 345677777777664 679999999999999999988 5667 99999999998776544322
Q ss_pred cCCccccccCCCCCCCceeccC-------CCHHHHHHHHHhc---CCcEEEEEEccccCCCCcccCChhHHHHHHHHHHh
Q 017259 91 SCDNEAIRGFGPLLPGHLKVDF-------GDITALEKIFKES---GDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSK 160 (374)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~-------~d~~~le~~l~~~---~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~ 160 (374)
.+.. +..+++ .|+++|+++++++ +.+++++++++++|++|.+. +.+.+++|.++|++
T Consensus 156 ~g~~------------~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~i~~p~nptG~~~-~~~~l~~l~~~~~~ 222 (435)
T 3piu_A 156 TGVE------------IVPIHCTSSNGFQITETALEEAYQEAEKRNLRVKGVLVTNPSNPLGTTM-TRNELYLLLSFVED 222 (435)
T ss_dssp TCCE------------EEEEECCGGGTSCCCHHHHHHHHHHHHHTTCCEEEEEEESSCTTTCCCC-CHHHHHHHHHHHHH
T ss_pred cCCE------------EEEeeCCCccCCcCCHHHHHHHHHHHHhcCCCeEEEEEcCCCCCCCCCC-CHHHHHHHHHHHHH
Confidence 2211 112221 1799999999852 34789999998899999877 78889999999999
Q ss_pred cCCEEEEeccccCCcccccCccc-ccC----CCC-----Cc----EEEeccccc-CCccchhhhee-CHHHHhhcCCCCC
Q 017259 161 YNILMIADEIQSGLARSGRMLAS-DWE----EVR-----PD----MVILGKALG-GGVIPVSAVLA-DKEVMLCIQPGEH 224 (374)
Q Consensus 161 ~~i~li~Dea~~~~~~~g~~~~~-~~~----~~~-----~d----~~s~sK~~~-~G~~~~G~~~~-~~~~~~~~~~~~~ 224 (374)
||++||+||+|+++.+.+..+.. ... +.+ ++ +.|+||+++ +|+ |+||+++ ++.+.+.+.. .
T Consensus 223 ~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~i~i~s~sK~~g~~G~-r~G~~~~~~~~~~~~~~~--~ 299 (435)
T 3piu_A 223 KGIHLISDEIYSGTAFSSPSFISVMEVLKDRNCDENSEVWQRVHVVYSLSKDLGLPGF-RVGAIYSNDDMVVAAATK--M 299 (435)
T ss_dssp HTCEEEEECTTGGGCCSSSCCCCHHHHHHC-------CGGGGEEEEEESSSSSCCGGG-CEEEEEESCHHHHHHHHH--H
T ss_pred cCCEEEEeccccccccCCCCCcCHHHhccccccccccCCCCCEEEEEeeecccCCCce-eEEEEEeCCHHHHHHHHH--H
Confidence 99999999999986555543221 111 111 23 458999998 898 9999988 5666666543 2
Q ss_pred CCCCCCCHHHHHHHHHHHHHHhh-----hcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCC---c
Q 017259 225 GSTFGGNPLASAVAIASLDVIRD-----EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTAL---P 296 (374)
Q Consensus 225 ~~~~~~~~~~~~aa~~al~~~~~-----~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~---~ 296 (374)
...+..+++++.++.++++.... ++..++++++.+++.+.|++. ++.......+.++|+.++.... .
T Consensus 300 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-----g~~~~~~~~g~~~~~~l~~~~~~~~~ 374 (435)
T 3piu_A 300 SSFGLVSSQTQHLLSAMLSDKKLTKNYIAENHKRLKQRQKKLVSGLQKS-----GISCLNGNAGLFCWVDMRHLLRSNTF 374 (435)
T ss_dssp GGGSCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-----TCEECCCCSSSEEEEECGGGSSSSSH
T ss_pred hhcCCCCHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----CCcccCCCeeEEEEEEcccccccCCc
Confidence 23455678888887777763221 123344444444444444432 2222222234788888864211 1
Q ss_pred hhHHHHHHHHHHC-CeEeccC------CCCEEEEecCCCCCHHHHHHHHHHHHHHHhccCC
Q 017259 297 VSAYDICLKMKER-GILAKPT------HDTIVRLTPPLSISSNELQEGSKALHDVLELDLP 350 (374)
Q Consensus 297 ~~~~~~~~~l~~~-Gi~v~~~------~~~~lRi~~~~~~~~e~i~~~~~~l~~~~~~~~~ 350 (374)
....++++.|+++ ||.+.++ ..+++||+++.. +++++++++++|+++++ ++.
T Consensus 375 ~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRi~~~~~-~~e~i~~~l~~l~~~l~-~~~ 433 (435)
T 3piu_A 375 EAEMELWKKIVYEVHLNISPGSSCHCTEPGWFRVCFANL-PERTLDLAMQRLKAFVG-EYY 433 (435)
T ss_dssp HHHHHHHHHHHHTSCEECEEGGGGTCSSTTEEEEECSSS-CHHHHHHHHHHHHHHHH-HHC
T ss_pred hhHHHHHHHHHHHCCEEEeCCcccCCCCCCEEEEEeeCC-CHHHHHHHHHHHHHHHH-HHh
Confidence 1356889999887 9999873 368999997655 99999999999999998 653
No 73
>1u08_A Hypothetical aminotransferase YBDL; alpha beta protein; HET: PLP; 2.35A {Escherichia coli} SCOP: c.67.1.1
Probab=99.97 E-value=4.5e-30 Score=240.72 Aligned_cols=290 Identities=15% Similarity=0.158 Sum_probs=202.3
Q ss_pred HHHHHHHHhcc----cC----CC-eEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccCC
Q 017259 23 FPVFAERLTSM----FG----YD-MVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCD 93 (374)
Q Consensus 23 ~~~l~~~l~~~----~~----~~-~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~~ 93 (374)
..++++.++++ +| .+ ++++++|+++|++.+++++ ..+| |+|++.+|+||+....+...+..
T Consensus 69 ~~~l~~~la~~l~~~~g~~~~~~~~v~~~~g~~~a~~~~~~~~-----~~~g-----d~vl~~~p~~~~~~~~~~~~g~~ 138 (386)
T 1u08_A 69 VQALREAIAQKTERLYGYQPDADSDITVTAGATEALYAAITAL-----VRNG-----DEVICFDPSYDSYAPAIALSGGI 138 (386)
T ss_dssp CHHHHHHHHHHHHHHHSCCCCTTTTEEEESSHHHHHHHHHHHH-----CCTT-----CEEEEEESCCTTHHHHHHHTTCE
T ss_pred CHHHHHHHHHHHHHHhCCCCCCCCCEEEcCChHHHHHHHHHHh-----CCCC-----CEEEEeCCCchhHHHHHHHcCCE
Confidence 45555555554 34 45 8999999999999999988 4567 99999999999876544433221
Q ss_pred ccccccCCCCCCCceeccC-CCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEecccc
Q 017259 94 NEAIRGFGPLLPGHLKVDF-GDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQS 172 (374)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~-~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~ 172 (374)
.... +...+ .+ .|+++|+++++ ++++++++++++|++|.+. +.+.+++|.++|++||++||+||+|+
T Consensus 139 ~~~v----~~~~~----~~~~d~~~l~~~l~---~~~~~v~l~~p~nptG~~~-~~~~l~~i~~~~~~~~~~li~De~~~ 206 (386)
T 1u08_A 139 VKRM----ALQPP----HFRVDWQEFAALLS---ERTRLVILNTPHNPSATVW-QQADFAALWQAIAGHEIFVISDEVYE 206 (386)
T ss_dssp EEEE----ECCTT----TCCCCHHHHHHHCC---TTEEEEEEESSCTTTCCCC-CHHHHHHHHHHHTTSCCEEEEECTTT
T ss_pred EEEe----ecCcc----cCcCCHHHHHHhhc---ccCEEEEEeCCCCCCCccC-CHHHHHHHHHHHHHcCcEEEEEcccc
Confidence 1111 11000 01 27899998886 5789999988889999776 78899999999999999999999999
Q ss_pred CCcccccCc-ccc----cCCCCCcEEEeccccc-CCccchhhheeCHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHh
Q 017259 173 GLARSGRML-ASD----WEEVRPDMVILGKALG-GGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIR 246 (374)
Q Consensus 173 ~~~~~g~~~-~~~----~~~~~~d~~s~sK~~~-~G~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~al~~~~ 246 (374)
++.+.|... ... ..+....+.|+||.++ +|+ |+||+++++++.+.+.......+++.+.+++.++.++++...
T Consensus 207 ~~~~~g~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~-r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~ 285 (386)
T 1u08_A 207 HINFSQQGHASVLAHPQLRERAVAVSSFGKTYHMTGW-KVGYCVAPAPISAEIRKVHQYLTFSVNTPAQLALADMLRAEP 285 (386)
T ss_dssp TCBCCSSCCCCGGGSHHHHTTEEEEEEHHHHTTCGGG-CCEEEECCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHCT
T ss_pred ccccCCCCCcChhcccCccCcEEEEecchhhcCCccc-ceEEEEcCHHHHHHHHHHHHhhccCCChHHHHHHHHHHhCCc
Confidence 876555321 111 1233334568999998 788 999999999988887654444567888999888888887541
Q ss_pred h--hcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCchhHHHHHHHHH-HCCeEeccC-------
Q 017259 247 D--EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMK-ERGILAKPT------- 316 (374)
Q Consensus 247 ~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~-~~Gi~v~~~------- 316 (374)
. ++..++++++.+++.+.|++. ++.......+.++|+.++... ..+..++++.|. ++||.+.++
T Consensus 286 ~~~~~~~~~~~~~~~~l~~~L~~~-----g~~~~~~~~g~~~~~~~~~~~-~~~~~~~~~~l~~~~gi~v~~g~~f~~~~ 359 (386)
T 1u08_A 286 EHYLALPDFYRQKRDILVNALNES-----RLEILPCEGTYFLLVDYSAVS-TLDDVEFCQWLTQEHGVAAIPLSVFCADP 359 (386)
T ss_dssp HHHHTHHHHHHHHHHHHHHHTTSS-----SCEECCCCBSSEEEEECTTTC-CSCHHHHHHHHHHHSCEECEEGGGGCSSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHC-----CCeecCCCceEEEEEecCCCC-CCCHHHHHHHHHHhCCEEEeCchHhCCCC
Confidence 1 134445555555555544432 222212233678888876420 015778999887 679999864
Q ss_pred -CCCEEEEecCCCCCHHHHHHHHHHHHH
Q 017259 317 -HDTIVRLTPPLSISSNELQEGSKALHD 343 (374)
Q Consensus 317 -~~~~lRi~~~~~~~~e~i~~~~~~l~~ 343 (374)
..+++||+++ .+++++++++++|++
T Consensus 360 ~~~~~iRis~~--~~~~~i~~~~~~l~~ 385 (386)
T 1u08_A 360 FPHKLIRLCFA--KKESTLLAAAERLRQ 385 (386)
T ss_dssp CCSCEEEEECC--SCHHHHHHHHHHHTT
T ss_pred CCCCEEEEEEc--CCHHHHHHHHHHHhh
Confidence 3579999965 589999999998863
No 74
>1o4s_A Aspartate aminotransferase; TM1255, structural genomics, JCS protein structure initiative, joint center for structural G transferase; HET: PLP; 1.90A {Thermotoga maritima} SCOP: c.67.1.1
Probab=99.97 E-value=2.3e-30 Score=243.10 Aligned_cols=290 Identities=15% Similarity=0.177 Sum_probs=210.0
Q ss_pred cHHHHHHHHhccc----C----CCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccCC
Q 017259 22 KFPVFAERLTSMF----G----YDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCD 93 (374)
Q Consensus 22 ~~~~l~~~l~~~~----~----~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~~ 93 (374)
...++++.+++++ | .+++++++|+++|++.+++++ ..+| |+|++.+|+|++....+...+..
T Consensus 79 g~~~lr~~la~~~~~~~g~~~~~~~v~~~~g~t~al~~~~~~l-----~~~g-----d~Vl~~~~~~~~~~~~~~~~g~~ 148 (389)
T 1o4s_A 79 GIYELREGIAKRIGERYKKDISPDQVVVTNGAKQALFNAFMAL-----LDPG-----DEVIVFSPVWVSYIPQIILAGGT 148 (389)
T ss_dssp CCHHHHHHHHHHHHHHHTCCCCGGGEEEESHHHHHHHHHHHHH-----CCTT-----CEEEEEESCCTTHHHHHHHTTCE
T ss_pred CCHHHHHHHHHHHHHHhCCCCCHHHEEEecCHHHHHHHHHHHh-----CCCC-----CEEEEcCCCchhHHHHHHHcCCE
Confidence 4556666666654 4 358999999999999999988 4567 99999999999876554433321
Q ss_pred ccccccCCCCCCCceeccC-CCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEecccc
Q 017259 94 NEAIRGFGPLLPGHLKVDF-GDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQS 172 (374)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~-~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~ 172 (374)
.... +...+ -.+ .|+++|+++++ ++++++++++++|++|.+. +++.+++|.++|++||++||+||+|+
T Consensus 149 ~~~v----~~~~~---~~~~~d~~~l~~~l~---~~~~~v~~~~p~nptG~~~-~~~~l~~l~~~~~~~~~~li~Dea~~ 217 (389)
T 1o4s_A 149 VNVV----ETFMS---KNFQPSLEEVEGLLV---GKTKAVLINSPNNPTGVVY-RREFLEGLVRLAKKRNFYIISDEVYD 217 (389)
T ss_dssp EEEE----ECCGG---GTTCCCHHHHHHTCC---TTEEEEEEESSCTTTCCCC-CHHHHHHHHHHHHHHTCEEEEECTTT
T ss_pred EEEE----ecCCc---cCCCCCHHHHHHhcc---cCceEEEEcCCCCCCCCCC-CHHHHHHHHHHHHHcCCEEEEEcccc
Confidence 1111 10000 011 17899988886 4688898888888899776 78999999999999999999999999
Q ss_pred CCcccccCcccccCC--CCCc--EEEeccccc-CCccchhhheeCHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHhh
Q 017259 173 GLARSGRMLASDWEE--VRPD--MVILGKALG-GGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRD 247 (374)
Q Consensus 173 ~~~~~g~~~~~~~~~--~~~d--~~s~sK~~~-~G~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~al~~~~~ 247 (374)
++.+.|.......+. ...+ +.|+||.++ +|+ |+||+++++++.+.+.......+++.+++++.++.++++.. .
T Consensus 218 ~~~~~g~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~-r~G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~-~ 295 (389)
T 1o4s_A 218 SLVYTDEFTSILDVSEGFDRIVYINGFSKSHSMTGW-RVGYLISSEKVATAVSKIQSHTTSCINTVAQYAALKALEVD-N 295 (389)
T ss_dssp TSBCSSCCCCHHHHCSSSTTEEEEEESTTTTTCGGG-CCEEEECCHHHHHHHHHHHHHHTCSCCHHHHHHHHHHTTCC-C
T ss_pred ccccCCCCCCHhhcCCCCCcEEEEeechhhcCCccc-ceEEEEeCHHHHHHHHHHhhhcccCCCHHHHHHHHHHHhcc-H
Confidence 876554322222111 1223 458999998 788 99999999998888765444456777888888888777542 3
Q ss_pred hcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCchhHHHHHHHHH-HCCeEeccCC----CCEEE
Q 017259 248 EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMK-ERGILAKPTH----DTIVR 322 (374)
Q Consensus 248 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~-~~Gi~v~~~~----~~~lR 322 (374)
+++.++++++.+++.+.|+++ .+. .. ....+.++|+.++ . +..++.+.|+ ++||.+.++. ++++|
T Consensus 296 ~~~~~~~~~~~~~l~~~L~~~--g~~-~~--~~~~~~~~~~~~~-~----~~~~l~~~l~~~~gi~v~~g~~f~~~~~~R 365 (389)
T 1o4s_A 296 SYMVQTFKERKNFVVERLKKM--GVK-FV--EPEGAFYLFFKVR-G----DDVKFCERLLEEKKVALVPGSAFLKPGFVR 365 (389)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT--TCC-CC--CCSBSSEEEEECS-S----CHHHHHHHHHHHHCEECEEGGGGTCTTEEE
T ss_pred HHHHHHHHHHHHHHHHHHHhc--CCe-ee--cCCcceEEEEeCC-C----CHHHHHHHHHHHCCEEEeCchhcCCCCeEE
Confidence 456777888888888888775 221 22 1223556677765 2 5788999998 8899998753 47999
Q ss_pred EecCCCCCHHHHHHHHHHHHHHHh
Q 017259 323 LTPPLSISSNELQEGSKALHDVLE 346 (374)
Q Consensus 323 i~~~~~~~~e~i~~~~~~l~~~~~ 346 (374)
++++ .+++++++++++|+++++
T Consensus 366 is~~--~~~~~l~~~l~~l~~~l~ 387 (389)
T 1o4s_A 366 LSFA--TSIERLTEALDRIEDFLN 387 (389)
T ss_dssp EECC--SCHHHHHHHHHHHHHHHT
T ss_pred EEEe--CCHHHHHHHHHHHHHHHh
Confidence 9976 489999999999999886
No 75
>3jtx_A Aminotransferase; NP_283882.1, structural genomics, joint CE structural genomics, JCSG, protein structure initiative; HET: LLP MES; 1.91A {Neisseria meningitidis Z2491}
Probab=99.97 E-value=2.7e-30 Score=243.03 Aligned_cols=298 Identities=14% Similarity=0.079 Sum_probs=205.6
Q ss_pred CCcHHHHHHHHhcccC-----CC-eEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccCC
Q 017259 20 NDKFPVFAERLTSMFG-----YD-MVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCD 93 (374)
Q Consensus 20 ~~~~~~l~~~l~~~~~-----~~-~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~~ 93 (374)
.++++.+++.+.+.+| .+ ++++|+|++++++.+++++. .+|.+.++|+|++..|+|++....+...+..
T Consensus 69 ~~lr~~la~~l~~~~g~~~~~~~~~i~~t~g~~~al~~~~~~~~-----~~g~~~~~d~vl~~~p~~~~~~~~~~~~g~~ 143 (396)
T 3jtx_A 69 PELRQACANWLKRRYDGLTVDADNEILPVLGSREALFSFVQTVL-----NPVSDGIKPAIVSPNPFYQIYEGATLLGGGE 143 (396)
T ss_dssp HHHHHHHHHHHHHHTTTCCCCTTTSEEEESSHHHHHHHHHHHHC-----CC---CCCCEEEEEESCCHHHHHHHHHTTCE
T ss_pred HHHHHHHHHHHHHhcCCCCCCCCCeEEEcCCcHHHHHHHHHHHh-----CCCCccCCCEEEEcCCCcHhHHHHHHHcCCE
Confidence 4455566666665544 56 99999999999999999883 3431111379999999998876655444332
Q ss_pred ccccccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEeccccC
Q 017259 94 NEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSG 173 (374)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~~ 173 (374)
..... ... .+.. .|++++++++++ +++++++++++|++|.+. +.+.+++|.++|++||++||+||+|++
T Consensus 144 ~~~v~-~~~--~g~~----~d~~~l~~~~~~---~~~~v~l~~p~nptG~~~-~~~~l~~i~~~~~~~~~~li~De~~~~ 212 (396)
T 3jtx_A 144 IHFAN-CPA--PSFN----PDWRSISEEVWK---RTKLVFVCSPNNPSGSVL-DLDGWKEVFDLQDKYGFIIASDECYSE 212 (396)
T ss_dssp EEEEE-CCT--TTCC----CCGGGSCHHHHH---TEEEEEEESSCTTTCCCC-CHHHHHHHHHHHHHHCCEEEEECTTTT
T ss_pred EEEee-cCC--CCCc----cCHHHHHHhhcc---CcEEEEEECCCCCCCCcC-CHHHHHHHHHHHHHcCCEEEEEccccc
Confidence 21111 000 0000 168888888873 788999888889999877 788899999999999999999999998
Q ss_pred Ccccc-cCcccc--------cCCCCCcEEEeccccc-CCccchhhheeCHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHH
Q 017259 174 LARSG-RMLASD--------WEEVRPDMVILGKALG-GGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLD 243 (374)
Q Consensus 174 ~~~~g-~~~~~~--------~~~~~~d~~s~sK~~~-~G~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~al~ 243 (374)
+.+.+ .+.... ..+....+.|+||.++ +|+ |+||+++++++.+.+.......+++.+++++.++.++++
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~-r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~ 291 (396)
T 3jtx_A 213 IYFDGNKPLGCLQAAAQLGRSRQKLLMFTSLSKRSNVPGL-RSGFVAGDAELLKNFLLYRTYHGSAMSIPVQRASIAAWD 291 (396)
T ss_dssp CCSTTCCCCCHHHHHHHTTCCCTTEEEEEESTTTSSCGGG-CCEEEEECHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHH
T ss_pred cccCCCCCchHHhhhhhcccccCcEEEEeccccccCCccc-ceEEEEeCHHHHHHHHHHHhhcccCCCHHHHHHHHHHhC
Confidence 86666 232221 1233344669999987 688 999999999998888765455567889999999988886
Q ss_pred HHhhhcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCchhHHHHHHHHHH-CCeEeccC------
Q 017259 244 VIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKE-RGILAKPT------ 316 (374)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~-~Gi~v~~~------ 316 (374)
. +++.++.++.....++.+.+....+..+. ....+.++|+.++.. +..++++.|++ +||.+.++
T Consensus 292 ~---~~~~~~~~~~~~~~~~~l~~~l~~~~~~~--~~~~~~~~~~~~~~~----~~~~~~~~l~~~~gi~v~~g~~~~~~ 362 (396)
T 3jtx_A 292 D---EQHVIDNRRLYQEKFERVIPILQQVFDVK--LPDASFYIWLKVPDG----DDLAFARNLWQKAAIQVLPGRFLARD 362 (396)
T ss_dssp C---CHHHHHHHHHHHHHHHHHHHHHTTTSCCC--CCSSSSEEEEECTTS----CHHHHHHHHHHHHCEECEEGGGGCCC
T ss_pred C---HHHHHHHHHHHHHHHHHHHHHHHhcCCcc--CCCeeEEEEEECCCC----CHHHHHHHHHHHCCEEEeCChHhCCc
Confidence 3 23333333333333333333332211111 223467788888753 57889999865 69999763
Q ss_pred ------CCCEEEEecCCCCCHHHHHHHHHHHHHHH
Q 017259 317 ------HDTIVRLTPPLSISSNELQEGSKALHDVL 345 (374)
Q Consensus 317 ------~~~~lRi~~~~~~~~e~i~~~~~~l~~~~ 345 (374)
..+++||+++ .+++++++++++|++++
T Consensus 363 ~~~~~~~~~~iRis~~--~~~~~i~~~l~~l~~~l 395 (396)
T 3jtx_A 363 TEQGNPGEGYVRIALV--ADVATCVKAAEDIVSLY 395 (396)
T ss_dssp CTTCCTTTTEEEEECC--SCHHHHHHHHHHHHHHC
T ss_pred ccccCCCCCeEEEEEc--CCHHHHHHHHHHHHHHh
Confidence 2589999965 49999999999998765
No 76
>2o0r_A RV0858C (N-succinyldiaminopimelate aminotransfera; PLP-binding enzyme, lysine biosynthesis, aminotransferase, S genomics; HET: LLP; 2.00A {Mycobacterium tuberculosis}
Probab=99.97 E-value=3.4e-30 Score=243.66 Aligned_cols=296 Identities=15% Similarity=0.182 Sum_probs=205.9
Q ss_pred HHHHHHHHhcc----cC----CC-eEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccCC
Q 017259 23 FPVFAERLTSM----FG----YD-MVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCD 93 (374)
Q Consensus 23 ~~~l~~~l~~~----~~----~~-~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~~ 93 (374)
..++++.++++ +| .+ ++++|+|+++|++.+++++ .++| |+|++.+|+|++....+...+..
T Consensus 64 ~~~l~~~la~~~~~~~g~~~~~~~~v~~t~g~~~al~~~~~~~-----~~~g-----d~Vl~~~~~y~~~~~~~~~~g~~ 133 (411)
T 2o0r_A 64 SAPLRRAIAAQRRRHFGVDYDPETEVLVTVGATEAIAAAVLGL-----VEPG-----SEVLLIEPFYDSYSPVVAMAGAH 133 (411)
T ss_dssp CHHHHHHHHHHHHHHHCCCCCTTTSEEEEEHHHHHHHHHHHHH-----CCTT-----CEEEEEESCCTTHHHHHHHTTCE
T ss_pred CHHHHHHHHHHHHHHcCCCCCCCceEEEeCCHHHHHHHHHHHh-----cCCC-----CEEEEeCCCcHhHHHHHHHcCCE
Confidence 34455555544 34 45 8999999999999999988 4567 99999999999876544333221
Q ss_pred ccccccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEeccccC
Q 017259 94 NEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSG 173 (374)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~~ 173 (374)
.... +...+..... .|+++|+++++ ++++++++++++|++|.+. +.+++++|.++|++||++||+||+|++
T Consensus 134 ~~~v----~~~~~~~~~~-~d~~~l~~~l~---~~~~~v~l~~~~nptG~~~-~~~~l~~i~~~~~~~~~~li~De~~~~ 204 (411)
T 2o0r_A 134 RVTV----PLVPDGRGFA-LDADALRRAVT---PRTRALIINSPHNPTGAVL-SATELAAIAEIAVAANLVVITDEVYEH 204 (411)
T ss_dssp EEEE----ECEEETTEEE-CCHHHHHHHCC---TTEEEEEEESSCTTTCCCC-CHHHHHHHHHHHHHTTCEEEEECTTTT
T ss_pred EEEe----eccccccCCC-CCHHHHHHhhc---cCceEEEEeCCCCCCCCCC-CHHHHHHHHHHHHHcCCEEEEEccccc
Confidence 1110 0000000000 37999998886 4789999998889999776 789999999999999999999999998
Q ss_pred CcccccC-cccccC----CCCCcEEEeccccc-CCccchhhheeCHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHhh
Q 017259 174 LARSGRM-LASDWE----EVRPDMVILGKALG-GGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRD 247 (374)
Q Consensus 174 ~~~~g~~-~~~~~~----~~~~d~~s~sK~~~-~G~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~al~~~~~ 247 (374)
+.+.|.. .....+ +....+.|+||.++ +|+ |+||+++++++.+.+.......+++.++++++++.++++...+
T Consensus 205 ~~~~g~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~-r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~ 283 (411)
T 2o0r_A 205 LVFDHARHLPLAGFDGMAERTITISSAAKMFNCTGW-KIGWACGPAELIAGVRAAKQYLSYVGGAPFQPAVALALDTEDA 283 (411)
T ss_dssp CBCTTCCCCCGGGSTTTGGGEEEEEEHHHHTTCTTT-CEEEEECCHHHHHHHHHHHHHHTSCCCTTHHHHHHHHHHHCHH
T ss_pred cccCCCCCcChhhccCCCCCEEEEeechhhcCCccc-eEEEEeeCHHHHHHHHHHHhhccCCCChHHHHHHHHHHhCChH
Confidence 7665532 122211 22233558999998 788 9999999999888776543444667778888888888875321
Q ss_pred --hcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCchhHHHHHHHHH-HCCeEeccC--------
Q 017259 248 --EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMK-ERGILAKPT-------- 316 (374)
Q Consensus 248 --~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~-~~Gi~v~~~-------- 316 (374)
++..++++++.+++.+.|++.. +.......+.++|+.++... ..+..++.+.|+ ++||.+.++
T Consensus 284 ~~~~~~~~~~~~~~~l~~~L~~~g-----~~~~~~~~g~~~~~~~~~~~-~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~ 357 (411)
T 2o0r_A 284 WVAALRNSLRARRDRLAAGLTEIG-----FAVHDSYGTYFLCADPRPLG-YDDSTEFCAALPEKVGVAAIPMSAFCDPAA 357 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT-----CEECCCCBSSEEEEECGGGT-CCCHHHHHHHHHHHHSEECEEGGGGSCCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcC-----CEecCCCeeEEEEEecCCCC-CCCHHHHHHHHHHhCCEEEcChhhhCCCcc
Confidence 2455666667777777776651 22112234567888886410 014678999887 579999763
Q ss_pred ---------CCCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 017259 317 ---------HDTIVRLTPPLSISSNELQEGSKALHDVLE 346 (374)
Q Consensus 317 ---------~~~~lRi~~~~~~~~e~i~~~~~~l~~~~~ 346 (374)
..+++||+++ .+++++++++++|+++++
T Consensus 358 ~~~~~~~~~~~~~iRis~~--~~~e~i~~~~~~l~~~~~ 394 (411)
T 2o0r_A 358 GQASQQADVWNHLVRFTFC--KRDDTLDEAIRRLSVLAE 394 (411)
T ss_dssp -------CCGGGCEEEECC--SCHHHHHHHHHHHGGGGC
T ss_pred ccccccccCCCCeEEEEec--CCHHHHHHHHHHHHHHHh
Confidence 2468999965 589999999999988776
No 77
>3ele_A Amino transferase; RER070207001803, structural genomics, JOI for structural genomics, JCSG; HET: MSE PLP; 2.10A {Eubacterium rectale}
Probab=99.97 E-value=5.6e-30 Score=241.01 Aligned_cols=293 Identities=15% Similarity=0.153 Sum_probs=206.8
Q ss_pred CcHHHHHHHHhccc----CCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccCCccc
Q 017259 21 DKFPVFAERLTSMF----GYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEA 96 (374)
Q Consensus 21 ~~~~~l~~~l~~~~----~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~ 96 (374)
++++.+++++.+.+ ..+++++|+|+++|++.+++.+. ++| +|+|++..|+|++....+...+.....
T Consensus 80 ~lr~~la~~l~~~~g~~~~~~~i~~~~g~~~al~~~~~~l~-----~~g----~d~vl~~~p~~~~~~~~~~~~g~~~~~ 150 (398)
T 3ele_A 80 ETRAAIAEFLNNTHGTHFNADNLYMTMGAAASLSICFRALT-----SDA----YDEFITIAPYFPEYKVFVNAAGARLVE 150 (398)
T ss_dssp HHHHHHHHHHHHHHCCCCCGGGEEEESSHHHHHHHHHHHHC-----CST----TCEEEEESSCCTHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHHHHHhCCCCChHHEEEccCHHHHHHHHHHHHc-----CCC----CCEEEEeCCCchhhHHHHHHcCCEEEE
Confidence 34445555555443 45689999999999999999883 333 379999999998876655443322111
Q ss_pred cccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHh------cCCEEEEecc
Q 017259 97 IRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSK------YNILMIADEI 170 (374)
Q Consensus 97 ~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~------~~i~li~Dea 170 (374)
. +...+. . .-|+++|+++++ ++++++++++++|++|.+. +.+.+++|.++|++ ||++||+||+
T Consensus 151 v----~~~~~~--~-~~d~~~l~~~l~---~~~~~v~~~~p~nptG~~~-~~~~l~~l~~~~~~~~~~~~~~~~li~De~ 219 (398)
T 3ele_A 151 V----PADTEH--F-QIDFDALEERIN---AHTRGVIINSPNNPSGTVY-SEETIKKLSDLLEKKSKEIGRPIFIIADEP 219 (398)
T ss_dssp E----CCCTTT--S-SCCHHHHHHTCC---TTEEEEEECSSCTTTCCCC-CHHHHHHHHHHHHHHHHHHTSCCEEEEECT
T ss_pred E----ecCCcC--C-cCCHHHHHHHhC---cCCCEEEEcCCCCCCCCCC-CHHHHHHHHHHHHhhhhccCCCeEEEEecc
Confidence 1 110000 0 017899998886 4789999988899999877 78889999999999 9999999999
Q ss_pred ccCCcccccCccc--ccCCCCCcEEEeccccc-CCccchhhheeCHHHHh------hcCCCC-CCCCCCCCHHHHHHHHH
Q 017259 171 QSGLARSGRMLAS--DWEEVRPDMVILGKALG-GGVIPVSAVLADKEVML------CIQPGE-HGSTFGGNPLASAVAIA 240 (374)
Q Consensus 171 ~~~~~~~g~~~~~--~~~~~~~d~~s~sK~~~-~G~~~~G~~~~~~~~~~------~~~~~~-~~~~~~~~~~~~~aa~~ 240 (374)
|+++.+.|..... ...+....+.|+||.++ +|+ |+||+++++++.+ .+.... ...+++.+.+++.++.+
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~-r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 298 (398)
T 3ele_A 220 YREIVYDGIKVPFVTKYYDNTLVCYSYSKSLSLPGE-RIGYVLVPDEVYDKAELYAAVCGAGRALGYVCAPSLFQKMIVK 298 (398)
T ss_dssp TTTCBCTTCCCCCGGGTCSSEEEEEESTTTSSCTTT-CCEEEECCTTSTTHHHHHHHHHHHHHHTTCCCSCHHHHHHHTT
T ss_pred ccccccCCCCcCChHhhcCCeEEEEehhhcCCCccc-eeEEEEEcchhhhHHHHHHHHHHHhhhccccCCCHHHHHHHHH
Confidence 9988666543222 22222233458999998 898 9999998876432 222111 12345667777777665
Q ss_pred HHHHHhhhcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCchhHHHHHHHHHHCCeEeccCC---
Q 017259 241 SLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTH--- 317 (374)
Q Consensus 241 al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~--- 317 (374)
+++ .....++++++++++.+.|+++. +.......+.++|+.++.. +..++.+.|.++||.++++.
T Consensus 299 ~l~---~~~~~~~~~~~~~~l~~~L~~~g-----~~~~~~~~~~~~~~~~~~~----~~~~~~~~l~~~gi~v~~g~~~~ 366 (398)
T 3ele_A 299 CQG---ATGDINAYKENRDLLYEGLTRIG-----YHCFKPDGAFYMFVKALED----DSNAFCEKAKEEDVLIVAADGFG 366 (398)
T ss_dssp CTT---CCCCHHHHHHHHHHHHHHHHHHT-----CCEECCSBSSEEEEECSSS----CHHHHHHHHHTTTEECEESGGGT
T ss_pred Hhc---CHHHHHHHHHHHHHHHHHHHHcC-----CeecCCCeeEEEEEEcCCC----CHHHHHHHHHHCCEEEeCccccC
Confidence 554 33457888888899988888762 2111223355578877654 57889999999999998863
Q ss_pred -CCEEEEecCCCCCHHHHHHHHHHHHHHHhccC
Q 017259 318 -DTIVRLTPPLSISSNELQEGSKALHDVLELDL 349 (374)
Q Consensus 318 -~~~lRi~~~~~~~~e~i~~~~~~l~~~~~~~~ 349 (374)
++++||+++ .+++++++++++|+++++ ++
T Consensus 367 ~~~~iRis~~--~~~e~i~~~l~~l~~~l~-~~ 396 (398)
T 3ele_A 367 CPGWVRISYC--VDREMIKHSMPAFEKIYK-KY 396 (398)
T ss_dssp CTTEEEEECC--SCHHHHHHHHHHHHHHHH-HH
T ss_pred CCCeEEEEec--CCHHHHHHHHHHHHHHHH-Hh
Confidence 689999964 799999999999999998 65
No 78
>3a2b_A Serine palmitoyltransferase; vitamin B6-dependent enzyme fold type I, acyltransferase, PY phosphate; HET: PLP; 2.30A {Sphingobacterium multivorum}
Probab=99.97 E-value=1.7e-29 Score=237.79 Aligned_cols=307 Identities=13% Similarity=0.157 Sum_probs=224.8
Q ss_pred hHHHHHHHhccccC-----cCCCCCcHHHHHHHHhcccCCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEe
Q 017259 2 KALQEQAEKLTLSS-----RAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSC 76 (374)
Q Consensus 2 ~a~~~~~~~~~~~~-----~~~~~~~~~~l~~~l~~~~~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~ 76 (374)
+++.+++.+..... ..+..+.++++++++++++|.+++++++||++|++.+++++ ..+| |+|++.
T Consensus 64 ~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~g~~~v~~~~ggt~a~~~~~~~~-----~~~g-----d~V~~~ 133 (398)
T 3a2b_A 64 KAAQDALEKYGTGCAGSRFLNGTLDIHVELEEKLSAYVGKEAAILFSTGFQSNLGPLSCL-----MGRN-----DYILLD 133 (398)
T ss_dssp HHHHHHHHHHCSCCCSBTTTTCCCHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHS-----SCTT-----CEEEEE
T ss_pred HHHHHHHHHcCCCCCCcCcccCCcHHHHHHHHHHHHHhCCCcEEEECCHHHHHHHHHHHH-----hCCC-----CEEEEC
Confidence 45666665543211 12345778899999999999999999999999999999987 5667 999999
Q ss_pred ccCCCCcccccccccCCccccccCCCCCCCceeccCCCHHHHHHHHHhcCC-cEEEEEEccccCCCCcccCChhHHHHHH
Q 017259 77 CGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGD-QIAGFLFEPIQGEAGVIIPPDGYLKAVR 155 (374)
Q Consensus 77 ~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~-~~~~vi~~~~~~~~g~~~~~~~~l~~l~ 155 (374)
.|+|.+........+ ..+..++..|++++++++++..+ +++++++++++|++|.+.+ +++|.
T Consensus 134 ~p~~~~~~~~~~~~g-------------~~~~~v~~~d~~~l~~~l~~~~~~~~~~v~~~~~~nptG~~~~----~~~l~ 196 (398)
T 3a2b_A 134 ERDHASIIDGSRLSF-------------SKVIKYGHNNMEDLRAKLSRLPEDSAKLICTDGIFSMEGDIVN----LPELT 196 (398)
T ss_dssp TTCCHHHHHHHHHSS-------------SEEEEECTTCHHHHHHHHHTSCSSSCEEEEEESBCTTTCCBCC----HHHHH
T ss_pred CccCHHHHHHHHHcC-------------CceEEeCCCCHHHHHHHHHhhccCCceEEEEeCCCCCCCCccC----HHHHH
Confidence 999765543332222 22334455689999999986432 6899999999999999987 99999
Q ss_pred HHHHhcCCEEEEeccccCC--cccccCcccccCCC--CCcEE--EecccccCCccchhhheeCHHHHhhcCCCC--CCCC
Q 017259 156 DLCSKYNILMIADEIQSGL--ARSGRMLASDWEEV--RPDMV--ILGKALGGGVIPVSAVLADKEVMLCIQPGE--HGST 227 (374)
Q Consensus 156 ~l~~~~~i~li~Dea~~~~--~~~g~~~~~~~~~~--~~d~~--s~sK~~~~G~~~~G~~~~~~~~~~~~~~~~--~~~~ 227 (374)
++|++||++||+||+|+.+ ++.+..+ ...++. .+|++ |+||.++. +.||+++++++++.+.... ...+
T Consensus 197 ~~~~~~~~~li~De~~~~~~~~~~~~~~-~~~~~~~~~~di~~~s~sK~~~~---~GG~~~~~~~~~~~l~~~~~~~~~~ 272 (398)
T 3a2b_A 197 SIANEFDAAVMVDDAHSLGVIGHKGAGT-ASHFGLNDDVDLIMGTFSKSLAS---LGGFVAGDADVIDFLKHNARSVMFS 272 (398)
T ss_dssp HHHHHHTCEEEEECTTTTTTSSGGGCCH-HHHHTCGGGCSEEEEESSSTTCS---SCEEEEECHHHHHHHHHHCHHHHSS
T ss_pred HHHHHcCcEEEEECCCcccccCCCCCch-HhhcCCCcCCeEEEecccccccC---CCcEEEeCHHHHHHHHHhcccceec
Confidence 9999999999999999844 3333322 222233 24666 89999983 1278889998888776421 2334
Q ss_pred CCCCHHHHHHHHHHHHHHhh-hcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCchhHHHHHHHH
Q 017259 228 FGGNPLASAVAIASLDVIRD-EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKM 306 (374)
Q Consensus 228 ~~~~~~~~~aa~~al~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l 306 (374)
...++..++++.++++.... ++..++++++.+++.+.|+++ .++ +. .+.+.++++.++... +..++.+.|
T Consensus 273 ~~~~~~~~a~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~--g~~-~~---~~~g~~~~~~~~~~~---~~~~l~~~l 343 (398)
T 3a2b_A 273 ASMTPASVASTLKALEIIQNEPEHIEKLWKNTDYAKAQLLDH--GFD-LG---ATESPILPIFIRSNE---KTFWVTKML 343 (398)
T ss_dssp BCCCHHHHHHHHHHHHHHHHCTHHHHHHHHHHHHHHHHHHHT--TCC-BC---SCCSSEEEEECCCHH---HHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHhc--CCC-cC---CCCCCEEEEEcCCHH---HHHHHHHHH
Confidence 45555555566778876532 367788888888888888775 221 21 234788888876422 578899999
Q ss_pred HHCCeEeccCC-------CCEEEEecCCCCCHHHHHHHHHHHHHHHhccC
Q 017259 307 KERGILAKPTH-------DTIVRLTPPLSISSNELQEGSKALHDVLELDL 349 (374)
Q Consensus 307 ~~~Gi~v~~~~-------~~~lRi~~~~~~~~e~i~~~~~~l~~~~~~~~ 349 (374)
.++||.+.++. .+++|++++..++++++++++++|+++++ ++
T Consensus 344 ~~~gi~v~~~~~~~~~~~~~~iRis~~~~~~~e~i~~~~~~l~~~l~-~~ 392 (398)
T 3a2b_A 344 QDDGVFVNPVVSPAVPAEESLIRFSLMATHTYDQIDEAIEKMVKVFK-QA 392 (398)
T ss_dssp HHTTEECEEECTTTSCGGGCEEEEECCTTCCHHHHHHHHHHHHHHHH-HC
T ss_pred HHCCcEEEeeCCCCCCCCCceEEEEEeCCCCHHHHHHHHHHHHHHHH-Hh
Confidence 99999998853 47899998887899999999999999998 65
No 79
>3cq5_A Histidinol-phosphate aminotransferase; PLP, PMP, amino-acid biosynthesis, histidine biosynthesis, pyridoxal phosphate; HET: PMP; 1.80A {Corynebacterium glutamicum} PDB: 3cq6_A* 3cq4_A
Probab=99.97 E-value=7.2e-29 Score=231.20 Aligned_cols=304 Identities=13% Similarity=0.071 Sum_probs=216.1
Q ss_pred hHHHHHHHhccccCcCCCCCcHHHHHHHHhcc------cC--CCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEE
Q 017259 2 KALQEQAEKLTLSSRAFYNDKFPVFAERLTSM------FG--YDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAII 73 (374)
Q Consensus 2 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~------~~--~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~v 73 (374)
+++.+++.+.......|+.+...++++.++++ .+ .+++++++|++++++.+++++ ..+| |+|
T Consensus 50 ~a~~~~~~~~~~~~~~y~~~~~~~l~~~la~~l~~~~g~~~~~~~v~~~~G~~~al~~~~~~l-----~~~g-----d~V 119 (369)
T 3cq5_A 50 ADLVATVDKIATELNRYPERDAVELRDELAAYITKQTGVAVTRDNLWAANGSNEILQQLLQAF-----GGPG-----RTA 119 (369)
T ss_dssp HHHHHHHHHHGGGTTSCCCTTCHHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHHHHHHHHH-----CSTT-----CEE
T ss_pred HHHHHHHHhcccccccCCCccHHHHHHHHHHhhhhcccCCCChHhEEECCChHHHHHHHHHHh-----cCCC-----CEE
Confidence 45666665532112223333345777777776 33 468999999999999999988 4567 999
Q ss_pred EEeccCCCCcccccccccCCccccccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHH
Q 017259 74 VSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKA 153 (374)
Q Consensus 74 i~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~ 153 (374)
++.+|+|++....+...+...... +...+. ..|+++++++++++ +++++++++++|++|.+.+ +++
T Consensus 120 l~~~~~y~~~~~~~~~~g~~~~~v----~~~~~~----~~d~~~l~~~i~~~--~~~~v~~~~~~nptG~~~~----~~~ 185 (369)
T 3cq5_A 120 LGFQPSYSMHPILAKGTHTEFIAV----SRGADF----RIDMDVALEEIRAK--QPDIVFVTTPNNPTGDVTS----LDD 185 (369)
T ss_dssp EEEESSCTHHHHHHHHTTCEEEEE----ECCTTS----SCCHHHHHHHHHHH--CCSEEEEESSCTTTCCCCC----HHH
T ss_pred EEcCCChHHHHHHHHHcCCEEEEe----cCCcCC----CCCHHHHHHHhhcc--CCCEEEEeCCCCCCCCCCC----HHH
Confidence 999999988766544433221111 100000 12789999999853 5778888889999999987 888
Q ss_pred HHHHHHhcCCEEEEeccccCCcccccCccc-ccCC-CCCcEEEeccccc-CCccchhhheeCHHHHhhcCCCCCCCCCCC
Q 017259 154 VRDLCSKYNILMIADEIQSGLARSGRMLAS-DWEE-VRPDMVILGKALG-GGVIPVSAVLADKEVMLCIQPGEHGSTFGG 230 (374)
Q Consensus 154 l~~l~~~~~i~li~Dea~~~~~~~g~~~~~-~~~~-~~~d~~s~sK~~~-~G~~~~G~~~~~~~~~~~~~~~~~~~~~~~ 230 (374)
+.++|+.+++++|+||+|+++.+....... ...+ ....+.|+||.++ +|+ |+||+++++++.+.+... ..+++.
T Consensus 186 l~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~-r~G~~~~~~~~~~~l~~~--~~~~~~ 262 (369)
T 3cq5_A 186 VERIINVAPGIVIVDEAYAEFSPSPSATTLLEKYPTKLVVSRTMSKAFDFAGG-RLGYFVANPAFIDAVMLV--RLPYHL 262 (369)
T ss_dssp HHHHHHHCSSEEEEECTTGGGCCSCCGGGGTTTCTTTEEEEEESSSTTSCGGG-CCEEEEECTHHHHHHHTT--SCTTCS
T ss_pred HHHHHHhCCCEEEEECCchhhcCCcchHHHHhhCCCCEEEEEechHhcCCccc-ceEEEEeCHHHHHHHHHc--CCCCCC
Confidence 888888889999999999977542121111 1122 2234568999998 798 999999999988888753 335678
Q ss_pred CHHHHHHHHHHHHHHhh-hcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCchhHHHHHHHHHHC
Q 017259 231 NPLASAVAIASLDVIRD-EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKER 309 (374)
Q Consensus 231 ~~~~~~aa~~al~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~ 309 (374)
+++++.++.++++..+. ++..++++++.+++.+.|++. ++. ..++.+.++++.++ . +..++.+.|.++
T Consensus 263 ~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~-----g~~-~~~~~~~~~~~~~~-~----~~~~l~~~l~~~ 331 (369)
T 3cq5_A 263 SALSQAAAIVALRHSADTLGTVEKLSVERVRVAARLEEL-----GYA-VVPSESNFVFFGDF-S----DQHAAWQAFLDR 331 (369)
T ss_dssp CHHHHHHHHHHHHTHHHHHTHHHHHHHHHHHHHHHHHHH-----TCE-EECCSSSEEEEECC-S----SHHHHHHHHHHT
T ss_pred CHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhC-----CCE-ECCCCCeEEEEECC-C----CHHHHHHHHHHC
Confidence 99999999888875321 245667777777777777663 221 12445778888776 2 578899999999
Q ss_pred CeEeccCC-CCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 017259 310 GILAKPTH-DTIVRLTPPLSISSNELQEGSKALHDVLE 346 (374)
Q Consensus 310 Gi~v~~~~-~~~lRi~~~~~~~~e~i~~~~~~l~~~~~ 346 (374)
||.+.+++ ++++|++++ +++++++++++|+++++
T Consensus 332 gi~v~~~~~~~~iRis~~---~~~~i~~~~~~l~~~~~ 366 (369)
T 3cq5_A 332 GVLIRDVGIAGHLRTTIG---VPEENDAFLDAAAEIIK 366 (369)
T ss_dssp TEECBCCSCTTEEEEECC---CHHHHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCeEEEEeC---CHHHHHHHHHHHHHHHh
Confidence 99999863 589999965 78999999999999886
No 80
>2z61_A Probable aspartate aminotransferase 2; amino acid aminotransferase, kynurenine aminotransferase, MJ0684, cytoplasm; HET: LLP; 2.20A {Methanococcus jannaschii}
Probab=99.97 E-value=2.3e-30 Score=241.36 Aligned_cols=280 Identities=12% Similarity=0.168 Sum_probs=204.6
Q ss_pred cHHHHHHHHhccc--------CCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccCC
Q 017259 22 KFPVFAERLTSMF--------GYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCD 93 (374)
Q Consensus 22 ~~~~l~~~l~~~~--------~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~~ 93 (374)
...++++.+++++ ..+++++++||++|++.+++++ .++| |+|++.+|+||+....+...+.
T Consensus 67 ~~~~l~~~la~~~~~~~g~~~~~~~v~~~~g~~~a~~~~~~~~-----~~~g-----d~vl~~~p~~~~~~~~~~~~g~- 135 (370)
T 2z61_A 67 GILELREKISELYKDKYKADIIPDNIIITGGSSLGLFFALSSI-----IDDG-----DEVLIQNPCYPCYKNFIRFLGA- 135 (370)
T ss_dssp CCHHHHHHHHHHHHHHSSCCCCGGGEEEESSHHHHHHHHHHHH-----CCTT-----CEEEEESSCCTHHHHHHHHTTC-
T ss_pred CCHHHHHHHHHHHHHHhCCCCChhhEEECCChHHHHHHHHHHh-----cCCC-----CEEEEeCCCchhHHHHHHHcCC-
Confidence 3455555555543 3468999999999999999988 5567 9999999999987655443321
Q ss_pred ccccccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEeccccC
Q 017259 94 NEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSG 173 (374)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~~ 173 (374)
.+..++ .|+++|+++++ ++++++++++++|++|.+.+ ++ |.++|++||++||+||+|++
T Consensus 136 ------------~~~~v~-~d~~~l~~~l~---~~~~~v~~~~p~nptG~~~~----~~-l~~~~~~~~~~li~De~~~~ 194 (370)
T 2z61_A 136 ------------KPVFCD-FTVESLEEALS---DKTKAIIINSPSNPLGEVID----RE-IYEFAYENIPYIISDEIYNG 194 (370)
T ss_dssp ------------EEEEEC-SSHHHHHHHCC---SSEEEEEEESSCTTTCCCCC----HH-HHHHHHHHCSEEEEECTTTT
T ss_pred ------------EEEEeC-CCHHHHHHhcc---cCceEEEEcCCCCCcCcccC----HH-HHHHHHHcCCEEEEEcchhh
Confidence 122333 48999998886 47888999888999999987 66 99999999999999999998
Q ss_pred CcccccCcccccC-CC-CCc--EEEeccccc-CCccchhhheeCHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHH-Hhh
Q 017259 174 LARSGRMLASDWE-EV-RPD--MVILGKALG-GGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDV-IRD 247 (374)
Q Consensus 174 ~~~~g~~~~~~~~-~~-~~d--~~s~sK~~~-~G~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~al~~-~~~ 247 (374)
+.+.|.......+ +. ..+ +.|+||.++ +|+ |+||+++++++.+.+.......+++.+++++.++.++++. ...
T Consensus 195 ~~~~g~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~-r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~ 273 (370)
T 2z61_A 195 LVYEGKCYSAIEFDENLEKTILINGFSKLYAMTGW-RIGYVISNDEIIEAILKLQQNLFISAPTISQYAALKAFEKETER 273 (370)
T ss_dssp CBSSSCCCCGGGTCTTCSSEEEEEESTTTTTCGGG-CCEEEECCHHHHHHHHHHHHHHTSSSCHHHHHHHGGGGSHHHHH
T ss_pred cccCCCCcCHHHccCCCCcEEEEecChhccCCccc-eEEEEEECHHHHHHHHHHHhhcccCCCHHHHHHHHHHHhccCHH
Confidence 7655543232222 11 223 448999998 788 9999999999888876544445677899999988888865 221
Q ss_pred --hcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCchhHHHHHHHHH-HCCeEeccC------CC
Q 017259 248 --EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMK-ERGILAKPT------HD 318 (374)
Q Consensus 248 --~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~-~~Gi~v~~~------~~ 318 (374)
++..++++++.+++.+.|++. .+ ....+..+.++|+.++. +..++.+.|. ++||.+.++ ..
T Consensus 274 ~~~~~~~~~~~~~~~l~~~L~~~--g~---~~~~~~~~~~~~~~~~~-----~~~~~~~~l~~~~gi~v~~g~~f~~~~~ 343 (370)
T 2z61_A 274 EINSMIKEFDRRRRLVLKYVKDF--GW---EVNNPIGAYYVFPNIGE-----DGREFAYKLLKEKFVALTPGIGFGSKGK 343 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHT--TC---BCCCCCBTTEECCBCSS-----CHHHHHHHHHHHHCEECEEGGGGCGGGS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHc--CC---eecCCCcceEEEEecCC-----CHHHHHHHHHHhCCEEEeCchhhCCCCC
Confidence 245566667777777777654 12 11112235556666653 3678999998 789999875 26
Q ss_pred CEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 017259 319 TIVRLTPPLSISSNELQEGSKALHDVLE 346 (374)
Q Consensus 319 ~~lRi~~~~~~~~e~i~~~~~~l~~~~~ 346 (374)
+++||+++ .+++++++++++|+++++
T Consensus 344 ~~~Ri~~~--~~~~~i~~~~~~l~~~l~ 369 (370)
T 2z61_A 344 NYIRISYA--NSYENIKEGLERIKEFLN 369 (370)
T ss_dssp SBEEEECC--SCHHHHHHHHHHHHHHHC
T ss_pred CEEEEEEe--CCHHHHHHHHHHHHHHHh
Confidence 79999977 699999999999998875
No 81
>2x5d_A Probable aminotransferase; HET: LLP PLP; 2.25A {Pseudomonas aeruginosa}
Probab=99.97 E-value=4.1e-30 Score=243.17 Aligned_cols=302 Identities=11% Similarity=0.155 Sum_probs=210.9
Q ss_pred CCcHHHHHHHHhccc----CC-----CeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccc
Q 017259 20 NDKFPVFAERLTSMF----GY-----DMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISM 90 (374)
Q Consensus 20 ~~~~~~l~~~l~~~~----~~-----~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~ 90 (374)
.....++++.+++++ |. +++++|+|+++|++.+++++ ..+| |+|++..|+||+....+...
T Consensus 74 ~~g~~~l~~~ia~~~~~~~g~~~~~~~~v~~t~g~~~a~~~~~~~~-----~~~g-----d~Vl~~~p~~~~~~~~~~~~ 143 (412)
T 2x5d_A 74 SRGIPRLRRAISHWYRDRYDVQIDPESEAIVTIGSKEGLAHLMLAT-----LDHG-----DTILVPNPSYPIHIYGAVIA 143 (412)
T ss_dssp TTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEESCHHHHHHHHHHHH-----CCTT-----CEEEEEESCCHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHHhCCCCCCCcCEEEcCChHHHHHHHHHHh-----CCCC-----CEEEEcCCCchhHHHHHHHc
Confidence 344566666666655 53 58999999999999999988 5667 99999999999876655443
Q ss_pred cCCccccccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEecc
Q 017259 91 SCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEI 170 (374)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea 170 (374)
+...... +...+.. .. .|+++++++++ ++++++++++++|++|.+. +.+++++|.++|++||++||+||+
T Consensus 144 g~~~~~~----~~~~~~~-~~-~d~~~l~~~i~---~~~~~v~l~~p~nptG~~~-~~~~l~~l~~~~~~~~~~li~De~ 213 (412)
T 2x5d_A 144 GAQVRSV----PLVPGID-FF-NELERAIRESI---PKPRMMILGFPSNPTAQCV-ELDFFERVVALAKQYDVMVVHDLA 213 (412)
T ss_dssp TCEEEEE----ECSTTSC-HH-HHHHHHHHTEE---SCCSEEEEESSCTTTCCCC-CHHHHHHHHHHHHHHTCEEEEECT
T ss_pred CCEEEEe----ecCCccC-CC-CCHHHHHHhcc---cCceEEEECCCCCCCCCcC-CHHHHHHHHHHHHHcCCEEEEecc
Confidence 3211110 1100000 00 14677777665 4677888877888888776 789999999999999999999999
Q ss_pred ccCCcccccC-cccccC----CCCCcEEEeccccc-CCccchhhheeCHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHH
Q 017259 171 QSGLARSGRM-LASDWE----EVRPDMVILGKALG-GGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDV 244 (374)
Q Consensus 171 ~~~~~~~g~~-~~~~~~----~~~~d~~s~sK~~~-~G~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~al~~ 244 (374)
|+++.+.|.. .....+ +....+.|+||.++ +|+ |+||+++++++.+.+.......+++.+++++.++.++++.
T Consensus 214 ~~~~~~~g~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~-r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~ 292 (412)
T 2x5d_A 214 YADIVYDGWKAPSIMQVPGAKDIAVEFFTLSKSYNMAGW-RIGFMVGNPELVSALARIKSYHDYGTFTPLQVAAIAALEG 292 (412)
T ss_dssp TTTCBCTTCCCCCGGGSTTGGGTEEEEEECC-CCSCTTS-CCEEEEECHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHS
T ss_pred ccccccCCCCCCChhhccCccCcEEEEecCccccCCccc-ceEEEEcCHHHHHHHHHHHhhhccCCCHHHHHHHHHHHhC
Confidence 9987655532 122211 22223458999998 798 9999999999888877544445678899999999888874
Q ss_pred Hhh--hcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCchhHHHHHHHHHH-CCeEeccCC----
Q 017259 245 IRD--EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKE-RGILAKPTH---- 317 (374)
Q Consensus 245 ~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~-~Gi~v~~~~---- 317 (374)
..+ +++.++++++.+++.+.|++. .+. +. ....+.++|+.++......+..++++.|++ +||.+.++.
T Consensus 293 ~~~~~~~~~~~~~~~~~~l~~~L~~~--g~~-~~--~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~ 367 (412)
T 2x5d_A 293 DQQCVRDIARQYQQRRDVLVKGLREA--GWM-VE--NPKASMYVWAKIPEPYAHLGSLEFAKKLLQDAKVSVSPGIGFGD 367 (412)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHHHH--TCC-CC--CCSBSSEEEEECCTTTGGGCHHHHHHHHHHHHCEECEEGGGGCG
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHC--CCE-ec--CCCeeeEEEEEcCCccCCCCHHHHHHHHHHHCCEEEeCchhhCC
Confidence 321 245666777777777777765 221 11 122355778777532100136789999875 699998752
Q ss_pred --CCEEEEecCCCCCHHHHHHHHHHHHHHHhccCC
Q 017259 318 --DTIVRLTPPLSISSNELQEGSKALHDVLELDLP 350 (374)
Q Consensus 318 --~~~lRi~~~~~~~~e~i~~~~~~l~~~~~~~~~ 350 (374)
.+++||+++. +++++++++++|+++++ ++.
T Consensus 368 ~~~~~iRis~~~--~~~~l~~~l~~l~~~l~-~~~ 399 (412)
T 2x5d_A 368 YGDDHVRFALIE--NRDRLRQAVRGIKAMFR-ADG 399 (412)
T ss_dssp GGTTEEEEECCS--CHHHHHHHHHHHHHHHH-HTT
T ss_pred CCCCeEEEEecC--CHHHHHHHHHHHHHHHH-hcC
Confidence 5799999775 89999999999999998 653
No 82
>3ezs_A Aminotransferase ASPB; NP_207418.1, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 2.19A {Helicobacter pylori 26695} SCOP: c.67.1.0
Probab=99.97 E-value=4.6e-30 Score=239.70 Aligned_cols=281 Identities=11% Similarity=0.027 Sum_probs=201.5
Q ss_pred CcHHHHHHHHhcccC----CCeEEecCChHHHHHHHHHHHHHcccccc--cCCCCccEEEEeccCCCCcccccccccCCc
Q 017259 21 DKFPVFAERLTSMFG----YDMVLPMNTGAEGVETALKLARKWGYVKK--KFSIDEAIIVSCCGCFHGRTLAAISMSCDN 94 (374)
Q Consensus 21 ~~~~~l~~~l~~~~~----~~~~~~~~~gs~a~~~al~~~~~~~~~~~--G~~~~~~~vi~~~~~yhg~~~~~~~~~~~~ 94 (374)
++++.+++.+.+.+| .+++++|+|++++++.+++.+ .++ | |+|++..|+|++....+...+...
T Consensus 63 ~lr~~la~~l~~~~g~~~~~~~i~~t~g~~~al~~~~~~~-----~~~~~g-----d~vl~~~p~~~~~~~~~~~~g~~~ 132 (376)
T 3ezs_A 63 SLRAAQRGFFKRRFKIELKENELISTLGSREVLFNFPSFV-----LFDYQN-----PTIAYPNPFYQIYEGAAKFIKAKS 132 (376)
T ss_dssp HHHHHHHHHHHHHHSCCCCGGGEEEESSSHHHHHHHHHHH-----TTTCSS-----CEEEEEESCCTHHHHHHHHTTCEE
T ss_pred HHHHHHHHHHHHHhCCCCCHHHEEECcCcHHHHHHHHHHH-----cCCCCC-----CEEEEecCCcHhHHHHHHHcCCEE
Confidence 344445555544444 468999999999999999988 455 6 999999999998766554443221
Q ss_pred cccccCCCCCCCceeccCC-----CHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEec
Q 017259 95 EAIRGFGPLLPGHLKVDFG-----DITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADE 169 (374)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~-----d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~De 169 (374)
..++.+ ++ ++++++.. +++++++++++|++|.+. +.+.+++|.++|++||++||+||
T Consensus 133 -------------~~~~~~~~~~~~~-~l~~~~~~---~~~~v~~~~p~nptG~~~-~~~~l~~i~~~~~~~~~~li~De 194 (376)
T 3ezs_A 133 -------------LLMPLTKENDFTP-SLNEKELQ---EVDLVILNSPNNPTGRTL-SLEELISWVKLALKHDFILINDE 194 (376)
T ss_dssp -------------EEEECCGGGTSCC-CCCHHHHH---HCSEEEECSSCTTTCCCC-CHHHHHHHHHHHHHHTCEEEEEC
T ss_pred -------------EEcccCCCCCcch-hHHhhhcc---CCCEEEEcCCCCCcCCCC-CHHHHHHHHHHHHHcCcEEEEEc
Confidence 112221 12 45566653 577888888888899877 78899999999999999999999
Q ss_pred cccCCcccccCcccc---------cCCCCCcEEEeccccc-CCccchhhheeCHHHHhhcCCCCCCCCCCCCHHHHHHHH
Q 017259 170 IQSGLARSGRMLASD---------WEEVRPDMVILGKALG-GGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAI 239 (374)
Q Consensus 170 a~~~~~~~g~~~~~~---------~~~~~~d~~s~sK~~~-~G~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~ 239 (374)
+|+++.+.+...... ..+....+.|+||.++ +|+ |+||+++++++.+.+.......+++.+++++.++.
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~-r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 273 (376)
T 3ezs_A 195 CYSEIYENTPPPSLLEACMLAGNEAFKNVLVIHSLSKRSSAPGL-RSGFIAGDSRLLEKYKAFRAYLGYTSANAIQKASE 273 (376)
T ss_dssp TTTTCBSSSCCCCHHHHHHHTTCTTCTTEEEEEESTTTTTCGGG-CCEEEEECHHHHHHHHHHHTTTCCCCCHHHHHHHH
T ss_pred cchhhccCCCCCCHHHccccccccccCcEEEEecchhccCCccc-eeEEEeeCHHHHHHHHHHHhhhcCCCChHHHHHHH
Confidence 999886665433221 2233344569999997 798 99999999999888876556667888999999998
Q ss_pred HHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCchhHHHHHHHHHH-CCeEeccC--
Q 017259 240 ASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKE-RGILAKPT-- 316 (374)
Q Consensus 240 ~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~-~Gi~v~~~-- 316 (374)
++++. .+..++.++.....++.+.+.... +. .+..+.++|+.++ +..++++.|.+ +||.+.++
T Consensus 274 ~~l~~---~~~~~~~~~~~~~~~~~l~~~l~~---~~--~~~~~~~~~~~~~------~~~~~~~~l~~~~gi~v~~g~~ 339 (376)
T 3ezs_A 274 AAWLD---DRHAEFFRNIYANNLKLARKIFKN---TL--IYPYSFYVYLPVQ------NGENFAKTLYQNEGIITLPALY 339 (376)
T ss_dssp HHHHC---SHHHHHHHHHHHHHHHHHHHHSTT---CC--CCSBSSEEEEECS------CHHHHHHHHHHHHCCBCEEGGG
T ss_pred HHHhC---cHHHHHHHHHHHHHHHHHHHHhcC---CC--CCCcceEEEEECC------CHHHHHHHHHHhCCEEEeCcHH
Confidence 88874 222333333333333333332211 21 3456778888776 36789999998 89999763
Q ss_pred ------CCCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 017259 317 ------HDTIVRLTPPLSISSNELQEGSKALHDVLE 346 (374)
Q Consensus 317 ------~~~~lRi~~~~~~~~e~i~~~~~~l~~~~~ 346 (374)
..+++||+++ .+++++++++++|+++++
T Consensus 340 ~~~~~~~~~~iRis~~--~~~~~i~~~l~~l~~~l~ 373 (376)
T 3ezs_A 340 LGRNRIGADYVRLALV--YDTPLLEKPLEIIETYRE 373 (376)
T ss_dssp GCSTTTTTTEEEEECC--SCHHHHHHHHHHHHHHHC
T ss_pred hCCCCCCCCeEEEEEc--CCHHHHHHHHHHHHHHHH
Confidence 3689999965 499999999999999987
No 83
>1fc4_A 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino-3-ketobutyrate COA ligase, pyridoxal phosphate, COEN transferase, structural genomics; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.4
Probab=99.97 E-value=9e-30 Score=239.84 Aligned_cols=290 Identities=19% Similarity=0.265 Sum_probs=221.4
Q ss_pred CCcHHHHHHHHhcccCCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccCCcccccc
Q 017259 20 NDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRG 99 (374)
Q Consensus 20 ~~~~~~l~~~l~~~~~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~ 99 (374)
.+...++++.|++++|.++.++++||+++++.+++++ .++| |+|++..++|..... .....+
T Consensus 89 ~~~~~~l~~~la~~~g~~~~i~~~sGs~a~~~~~~~~-----~~~g-----d~v~~~~~~~~~~~~-~~~~~g------- 150 (401)
T 1fc4_A 89 QDSHKELEQKLAAFLGMEDAILYSSCFDANGGLFETL-----LGAE-----DAIISDALNHASIID-GVRLCK------- 150 (401)
T ss_dssp BHHHHHHHHHHHHHHTCSEEEEESCHHHHHHTTHHHH-----CCTT-----CEEEEETTCCHHHHH-HHHTSC-------
T ss_pred cHHHHHHHHHHHHHhCCCcEEEeCChHHHHHHHHHHH-----cCCC-----CEEEEcchhHHHHHH-HHHHcC-------
Confidence 5678889999999998888888899999999988887 5667 899999888644332 222211
Q ss_pred CCCCCCCceeccCCCHHHHHHHHHhcCC---cEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEecccc-CCc
Q 017259 100 FGPLLPGHLKVDFGDITALEKIFKESGD---QIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQS-GLA 175 (374)
Q Consensus 100 ~~~~~~~~~~~~~~d~~~le~~l~~~~~---~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~-~~~ 175 (374)
..+..++..|++++++++++.++ +++++++++++|++|.+.+ +++|.++|++||+++|+||+|+ ++.
T Consensus 151 -----~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~~~~~~nptG~~~~----~~~i~~l~~~~~~~li~De~~~~g~~ 221 (401)
T 1fc4_A 151 -----AKRYRYANNDMQELEARLKEAREAGARHVLIATDGVFSMDGVIAN----LKGVCDLADKYDALVMVDDSHAVGFV 221 (401)
T ss_dssp -----SEEEEECTTCHHHHHHHHHHHHHTTCSSEEEEEESEETTTTEECC----HHHHHHHHHHTTEEEEEECTTTTTTS
T ss_pred -----CceEEECCCCHHHHHHHHHHhhccCCCceEEEEeCCcCCCCCCCC----HHHHHHHHHHcCCEEEEECccccccc
Confidence 22344455689999999985322 6889999999999999997 9999999999999999999996 773
Q ss_pred -ccccCcccccCCC--CCcEE--EecccccCCccchhhheeCHHHHhhcCCCC--CCCCCCCCHHHHHHHHHHHHHHhh-
Q 017259 176 -RSGRMLASDWEEV--RPDMV--ILGKALGGGVIPVSAVLADKEVMLCIQPGE--HGSTFGGNPLASAVAIASLDVIRD- 247 (374)
Q Consensus 176 -~~g~~~~~~~~~~--~~d~~--s~sK~~~~G~~~~G~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~aa~~al~~~~~- 247 (374)
+.|..+ ....++ ..|++ |+||.++++. +||+++++++++.+.... ...+++.++++++++.++++.+..
T Consensus 222 ~~~g~~~-~~~~~~~~~~di~~~s~sK~~~~~~--gG~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~ 298 (401)
T 1fc4_A 222 GENGRGS-HEYCDVMGRVDIITGTLGKALGGAS--GGYTAARKEVVEWLRQRSRPYLFSNSLAPAIVAASIKVLEMVEAG 298 (401)
T ss_dssp STTSCCH-HHHTTCTTCCSEEEEESSSTTCSSS--CEEEEECHHHHHHHHHHCHHHHHSCCCCHHHHHHHHHHHHHHHTC
T ss_pred CCCCCcc-HHHcCCCcCCcEEEecchhhccCCC--CEEEEcCHHHHHHHHHhCcCceeCCCCCHHHHHHHHHHHHHHhcC
Confidence 344432 122222 34665 8999997665 388999999888776432 223567899999999999988753
Q ss_pred hcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCchhHHHHHHHHHHCCeEeccCC-------CCE
Q 017259 248 EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTH-------DTI 320 (374)
Q Consensus 248 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~-------~~~ 320 (374)
+++.++++++.+++.+.|++.. + .+. ++.+.++++.+++.. +..++.+.|.++||.++++. .++
T Consensus 299 ~~~~~~~~~~~~~l~~~L~~~g--~-~~~---~~~~~~~~~~~~~~~---~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~ 369 (401)
T 1fc4_A 299 SELRDRLWANARQFREQMSAAG--F-TLA---GADHAIIPVMLGDAV---VAQKFARELQKEGIYVTGFFYPVVPKGQAR 369 (401)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT--C-CBC---CSSSSEEEEEEECHH---HHHHHHHHHHHTTEECCEECTTSSCTTCEE
T ss_pred HHHHHHHHHHHHHHHHHHHHcC--C-ccc---CCCCCEEEEEcCChH---HHHHHHHHHHHCCcEEeeecCCCCCCCCce
Confidence 4678888888888888887752 2 122 356788888886422 57789999999999998753 358
Q ss_pred EEEecCCCCCHHHHHHHHHHHHHHHhccC
Q 017259 321 VRLTPPLSISSNELQEGSKALHDVLELDL 349 (374)
Q Consensus 321 lRi~~~~~~~~e~i~~~~~~l~~~~~~~~ 349 (374)
+|++++...+++++++++++|+++++ ++
T Consensus 370 iRi~~~~~~~~~~i~~~~~~l~~~~~-~~ 397 (401)
T 1fc4_A 370 IRTQMSAAHTPEQITRAVEAFTRIGK-QL 397 (401)
T ss_dssp EEEECCTTCCHHHHHHHHHHHHHHHH-HT
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHHH-Hh
Confidence 99998888999999999999999998 65
No 84
>1b5p_A Protein (aspartate aminotransferase); pyridoxal enzyme; HET: PLP; 1.80A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1gck_A* 1b5o_A* 5bj4_A* 1gc4_A* 1gc3_A* 1bkg_A* 5bj3_A* 1bjw_A*
Probab=99.97 E-value=1.1e-29 Score=238.20 Aligned_cols=295 Identities=15% Similarity=0.165 Sum_probs=204.3
Q ss_pred CcHHHHHHHHhcccC----CCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccCCccc
Q 017259 21 DKFPVFAERLTSMFG----YDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEA 96 (374)
Q Consensus 21 ~~~~~l~~~l~~~~~----~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~ 96 (374)
++++.+++++.+..| .+++++|+|+++|++.+++.+ .++| |+|++..|+|+++...+...+.....
T Consensus 72 ~lr~~ia~~~~~~~g~~~~~~~i~~t~g~~~al~~~~~~l-----~~~g-----d~Vlv~~p~y~~~~~~~~~~g~~~~~ 141 (385)
T 1b5p_A 72 ELREALAEKFRRENGLSVTPEETIVTVGGSQALFNLFQAI-----LDPG-----DEVIVLSPYWVSYPEMVRFAGGVVVE 141 (385)
T ss_dssp HHHHHHHHHHHHTTCCCCCGGGEEEESHHHHHHHHHHHHH-----CCTT-----CEEEEEESCCTHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHHHHHhCCCCChHHEEEcCChHHHHHHHHHHh-----cCCC-----CEEEEcCCCchhHHHHHHHcCCEEEE
Confidence 344445555544333 468999999999999999988 5667 99999999998765544433221111
Q ss_pred cccCCCCCCCceeccC-CCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEeccccCCc
Q 017259 97 IRGFGPLLPGHLKVDF-GDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLA 175 (374)
Q Consensus 97 ~~~~~~~~~~~~~~~~-~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~~~~ 175 (374)
. +.... -.+ .|+++++++++ ++++++++++++|++|.+. +++.+++|.++|++||++||+||+|+++.
T Consensus 142 v----~~~~~---~~~~~d~~~l~~~l~---~~~~~v~~~~p~NPtG~~~-~~~~l~~i~~~~~~~~~~li~De~~~~~~ 210 (385)
T 1b5p_A 142 V----ETLPE---EGFVPDPERVRRAIT---PRTKALVVNSPNNPTGAVY-PKEVLEALARLAVEHDFYLVSDEIYEHLL 210 (385)
T ss_dssp E----ECCGG---GTTCCCHHHHHTTCC---TTEEEEEEESSCTTTCCCC-CHHHHHHHHHHHHHTTCEEEEECTTTTCB
T ss_pred e----ecCcc---cCCCCCHHHHHHhcC---CCCEEEEEeCCCCCCCCCc-CHHHHHHHHHHHHHcCCEEEEEccchhcc
Confidence 1 10000 001 27888888876 4688888888889999777 89999999999999999999999999875
Q ss_pred ccccCcccccCCCCCc--EEEeccccc-CCccchhhheeCHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHH---Hhh--
Q 017259 176 RSGRMLASDWEEVRPD--MVILGKALG-GGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDV---IRD-- 247 (374)
Q Consensus 176 ~~g~~~~~~~~~~~~d--~~s~sK~~~-~G~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~al~~---~~~-- 247 (374)
+.|....+..+.-..+ +.||||.++ +|+ |+||+++++++.+.+.......+++.+.+++.++.++++. ..+
T Consensus 211 ~~~~~~~~~~~~~~~~i~~~s~SK~~~~~G~-RiG~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~ 289 (385)
T 1b5p_A 211 YEGEHFSPGRVAPEHTLTVNGAAKAFAMTGW-RIGYACGPKEVIKAMASVSRQSTTSPDTIAQWATLEALTNQEASRAFV 289 (385)
T ss_dssp SSSCCCCGGGTCTTTEEEEEESTTTTTCGGG-CCEEEECCHHHHHHHHHHHHTTTCSCCHHHHHHHHHHHHCHHHHHHHH
T ss_pred cCCCCCCHHHcCCCCEEEEEechhhcCCccc-ceEEEEeCHHHHHHHHHHHhhccCCCCHHHHHHHHHHHhCCCcchHHH
Confidence 5442222222211112 338999998 698 9999999998888776543445667788999988888863 222
Q ss_pred hcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCchhHHHHHHHHHHCCeEeccCC----CCEEEE
Q 017259 248 EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTH----DTIVRL 323 (374)
Q Consensus 248 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~----~~~lRi 323 (374)
++..++++++++++.+.|+++ .+ .+. .+..+.++|+.++.. +.+..++.+.|.++||.++++. .+++||
T Consensus 290 ~~~~~~~~~~~~~l~~~L~~~--g~-~~~--~~~~~~~~~~~~~~~--~~~~~~l~~~l~~~gv~v~~g~~f~~~~~iRi 362 (385)
T 1b5p_A 290 EMAREAYRRRRDLLLEGLTAL--GL-KAV--RPSGAFYVLMDTSPI--APDEVRAAERLLEAGVAVVPGTDFAAFGHVRL 362 (385)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH--TC-CBC--CCSBTTEEEEECTTT--CSSHHHHHHHHHHTTEECEESGGGTCTTEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHC--CC-eec--CCCeeEEEEEecCCC--CCCHHHHHHHHHHCCeEEecccccCCCCeEEE
Confidence 245566677777777777765 22 111 122345566666521 1257889999999999998863 579999
Q ss_pred ecCCCCCHHHHHHHHHHHHHHHh
Q 017259 324 TPPLSISSNELQEGSKALHDVLE 346 (374)
Q Consensus 324 ~~~~~~~~e~i~~~~~~l~~~~~ 346 (374)
++. .+++++++++++|+++++
T Consensus 363 s~~--~~~~~i~~~l~~l~~~l~ 383 (385)
T 1b5p_A 363 SYA--TSEENLRKALERFARVLG 383 (385)
T ss_dssp ECC--SCHHHHHHHHHHGGGGC-
T ss_pred Eec--CCHHHHHHHHHHHHHHHh
Confidence 955 789999999998877654
No 85
>1iay_A ACC synthase 2, 1-aminocyclopropane-1-carboxylate synthase 2; protein-cofactor-inhibitor complex, V6-dependent enzyme, LYA; HET: PLP AVG; 2.70A {Solanum lycopersicum} SCOP: c.67.1.4 PDB: 1iax_A*
Probab=99.97 E-value=2e-29 Score=239.68 Aligned_cols=297 Identities=13% Similarity=0.118 Sum_probs=206.8
Q ss_pred HHHHHHHHhcccC----------CCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccC
Q 017259 23 FPVFAERLTSMFG----------YDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSC 92 (374)
Q Consensus 23 ~~~l~~~l~~~~~----------~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~ 92 (374)
..++++.++++++ .+++++++|++++++.+++++ ..+| |+|++..|+|+++........+
T Consensus 85 ~~~lr~~la~~~~~~~g~~~~~~~~~i~~~~G~~~ai~~~~~~~-----~~~g-----d~Vl~~~p~y~~~~~~~~~~~g 154 (428)
T 1iay_A 85 LPEFRKAIAKFMEKTRGGRVRFDPERVVMAGGATGANETIIFCL-----ADPG-----DAFLVPSPYYPAFNRDLRWRTG 154 (428)
T ss_dssp CHHHHHHHHHHHHHHTTTCSCCCTTSCEEEEHHHHHHHHHHHHH-----CCTT-----CEEEEESSCCTTHHHHTTTTTC
T ss_pred cHHHHHHHHHHHHHhcCCCCCCChhhEEEccChHHHHHHHHHHh-----CCCC-----CeEEEccCCCcchHHHHHHhcC
Confidence 4556666666542 578999999999999999988 5567 9999999999987543322222
Q ss_pred CccccccCCCCCCCceeccC-CCHHHHHHHHHh---cCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEe
Q 017259 93 DNEAIRGFGPLLPGHLKVDF-GDITALEKIFKE---SGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIAD 168 (374)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~-~d~~~le~~l~~---~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~D 168 (374)
...... +...+. .+ .|++++++++++ .+++++++++++++|++|.+. +++++++|.++|++||++||+|
T Consensus 155 ~~~~~v---~~~~~~---~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~p~nptG~~~-~~~~l~~l~~~~~~~~~~li~D 227 (428)
T 1iay_A 155 VQLIPI---HCESSN---NFKITSKAVKEAYENAQKSNIKVKGLILTNPSNPLGTTL-DKDTLKSVLSFTNQHNIHLVCD 227 (428)
T ss_dssp CEEEEE---CCCTTT---TTCCCHHHHHHHHHHHHHTTCCEEEEEEESSCTTTCCCC-CHHHHHHHHHHHHTTTCEEEEE
T ss_pred CEEEEe---ecCCcc---CCcCCHHHHHHHHHHHHhcCCceEEEEEcCCCCCCCCcC-CHHHHHHHHHHHHHCCeEEEEe
Confidence 111111 110000 01 278999998875 234788888888888899776 8999999999999999999999
Q ss_pred ccccCCcccccCc-ccccC-------CCCCc----EEEeccccc-CCccchhhhee-CHHHHhhcCCCCCCCCCCCCHHH
Q 017259 169 EIQSGLARSGRML-ASDWE-------EVRPD----MVILGKALG-GGVIPVSAVLA-DKEVMLCIQPGEHGSTFGGNPLA 234 (374)
Q Consensus 169 ea~~~~~~~g~~~-~~~~~-------~~~~d----~~s~sK~~~-~G~~~~G~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 234 (374)
|+|+++.+.+..+ ..... ++.+| +.|+||.++ +|+ |+||+++ ++++.+.+... ...++.+.++
T Consensus 228 ea~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~viv~~s~sK~~g~~Gl-r~G~~~~~~~~~~~~~~~~--~~~~~~~~~~ 304 (428)
T 1iay_A 228 EIYAATVFDTPQFVSIAEILDEQEMTYCNKDLVHIVYSLSKDMGLPGF-RVGIIYSFNDDVVNCARKM--SSFGLVSTQT 304 (428)
T ss_dssp CTTGGGCCSSSCCCCHHHHHTSGGGTTSCTTSEEEEEESTTTSSCGGG-CEEEEEESCHHHHHHHHHH--HTTSCCCHHH
T ss_pred ccccccccCCCCccCHHHhccccccccCCCCcEEEEecchhhcCCCCc-eEEEEEeCCHHHHHHHHHH--HhcccCCHHH
Confidence 9999865544322 11111 12255 459999998 798 9999988 67777776532 2346778999
Q ss_pred HHHHHHHHHHHh---h--hcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEE-EeeeEEEEeccCCC---chhHHHHHHH
Q 017259 235 SAVAIASLDVIR---D--EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRG-RGLFNAVEFDKTAL---PVSAYDICLK 305 (374)
Q Consensus 235 ~~aa~~al~~~~---~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~---~~~~~~~~~~ 305 (374)
+.++.++++... . ++..++++++++++.+.|+++ ++.. ..+ .+.++|+.++.... .....++.+.
T Consensus 305 ~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-----g~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~ 378 (428)
T 1iay_A 305 QYFLAAMLSDEKFVDNFLRESAMRLGKRHKHFTNGLEVV-----GIKC-LKNNAGLFCWMDLRPLLRESTFDSEMSLWRV 378 (428)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----TCCB-CCCSSSSEEEEECGGGCSSSSHHHHHHHHHH
T ss_pred HHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----CCcc-cCCCeeEEEEEechhhcCCCchhHHHHHHHH
Confidence 988888876432 1 234555666666666666654 1211 122 57788888764210 0135689999
Q ss_pred HHHC-CeEeccCC------CCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 017259 306 MKER-GILAKPTH------DTIVRLTPPLSISSNELQEGSKALHDVLE 346 (374)
Q Consensus 306 l~~~-Gi~v~~~~------~~~lRi~~~~~~~~e~i~~~~~~l~~~~~ 346 (374)
|+++ ||.++++. .+++||+++ ..+++++++++++|+++++
T Consensus 379 l~~~~gi~v~~~~~~~~~~~~~iRis~~-~~~~e~i~~~~~~l~~~l~ 425 (428)
T 1iay_A 379 IINDVKLNVSPGSSFECQEPGWFRVCFA-NMDDGTVDIALARIRRFVG 425 (428)
T ss_dssp HHHTSCEECEEGGGGTCSSSSEEEEECS-SSCHHHHHHHHHHHHHHHH
T ss_pred HHHhCCEEEeCchhhCCCCCCEEEEEEe-cCCHHHHHHHHHHHHHHHh
Confidence 9987 99998753 479999987 5799999999999999987
No 86
>2x5f_A Aspartate_tyrosine_phenylalanine pyridoxal-5' phosphate-dependent aminotransferase...; HET: PLP EPE; 1.80A {Staphylococcus aureus}
Probab=99.97 E-value=1.6e-29 Score=240.42 Aligned_cols=302 Identities=10% Similarity=0.086 Sum_probs=214.3
Q ss_pred cHHHHHHHHhccc-----C--CCe---EEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCccccccc-c
Q 017259 22 KFPVFAERLTSMF-----G--YDM---VLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAIS-M 90 (374)
Q Consensus 22 ~~~~l~~~l~~~~-----~--~~~---~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~-~ 90 (374)
...++++.+++++ + .++ +++|+|+++|++.+++.+ .++| |+|++.+|+|++....+.. .
T Consensus 89 g~~~lr~~ia~~~~~~~~~~~~~~~~~i~~t~g~~~al~~~~~~l-----~~~g-----d~Vl~~~p~y~~~~~~~~~~~ 158 (430)
T 2x5f_A 89 GIEELRDLWQQKMLRDNPELSIDNMSRPIVTNALTHGLSLVGDLF-----VNQD-----DTILLPEHNWGNYKLVFNTRN 158 (430)
T ss_dssp CCHHHHHHHHHHHHHHCTTCCGGGBCCCEEESHHHHHHHHHHHHH-----CCTT-----CEEEEESSCCTHHHHHHTTTT
T ss_pred CCHHHHHHHHHHHhccCcccCCCccceEEEcCCchHHHHHHHHHH-----hCCC-----CEEEEcCCcCccHHHHHHHhc
Confidence 4667777777766 4 457 999999999999999988 5667 9999999999987655544 3
Q ss_pred cCCccccccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHh-----cCCEE
Q 017259 91 SCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSK-----YNILM 165 (374)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~-----~~i~l 165 (374)
+...... +.... .. ..|++++++++++++.+++++++++++|++|.+. +.+++++|.++|++ ||+++
T Consensus 159 g~~~~~~----~~~~~-~~--~~d~~~l~~~l~~~~~~~~~v~i~~p~nptG~~~-~~~~l~~i~~~~~~~~~~~~~~~l 230 (430)
T 2x5f_A 159 GANLQTY----PIFDK-DG--HYTTDSLVEALQSYNKDKVIMILNYPNNPTGYTP-THKEVTTIVEAIKALANKGTKVIA 230 (430)
T ss_dssp CCEEEEE----CCBCT-TS--CBCSHHHHHHHHHCCSSEEEEEECSSCTTTCCCC-CHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred CCeEEEE----eccCc-cC--CcCHHHHHHHHHhcCCCCEEEEEcCCCCCCCCcC-CHHHHHHHHHHHHhhhhccCCEEE
Confidence 3221111 11010 00 1278999999986555788888888888899766 89999999999999 99999
Q ss_pred EEeccccCCcccccCc-cc--ccCCCCCc------EEEeccccc-CCccchhhhee---CHHHHhhcCCCCCC----CCC
Q 017259 166 IADEIQSGLARSGRML-AS--DWEEVRPD------MVILGKALG-GGVIPVSAVLA---DKEVMLCIQPGEHG----STF 228 (374)
Q Consensus 166 i~Dea~~~~~~~g~~~-~~--~~~~~~~d------~~s~sK~~~-~G~~~~G~~~~---~~~~~~~~~~~~~~----~~~ 228 (374)
|+||+|+++.+.+..+ .. ...+..++ +.|+||.++ +|+ |+||+++ ++++.+.+...... .++
T Consensus 231 i~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~-riG~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 309 (430)
T 2x5f_A 231 VVDDAYYGLFYEDVYTQSLFTALTNLHSNAILPIRLDGATKEFFAWGF-RVGFMTFGTSDQTTKEVLEAKVKGLIRSNIS 309 (430)
T ss_dssp EEECTTTTCBCSSSCCSCHHHHHHTTCCTTEEEEEEEEHHHHTTCGGG-CCEEEEEBCCCHHHHHHHHHHHHHHHHTTTS
T ss_pred EEehhcccccCCcccchHHHHHHhhccCCcceEEEEEecccCCCCCCC-CeEEEEEecCCHHHHHHHHHHHhhhhhcccC
Confidence 9999999876655421 21 11122333 448899998 798 9999999 98888887653333 567
Q ss_pred CCCHHHHHHHHHHHH-HH---hh-hcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCchhHHHHH
Q 017259 229 GGNPLASAVAIASLD-VI---RD-EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDIC 303 (374)
Q Consensus 229 ~~~~~~~~aa~~al~-~~---~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 303 (374)
+.+++++.++.++++ .. .. +...++++++.+++.+.|++..... ++.......+.++|+.++ .. +..+++
T Consensus 310 ~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~-g~~~~~~~~g~~~~~~~~-~~---~~~~~~ 384 (430)
T 2x5f_A 310 SGPLPTQSAVKHVLKNNKQFDKEIEQNIQTLKERYEVTKEVVYADQYHS-HWQAYDFNSGYFMAIKVH-DV---DPEALR 384 (430)
T ss_dssp SCCHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHTCGGGTT-TEEECCCCBSSEEEEEES-SS---CHHHHH
T ss_pred CCChHHHHHHHHHHccChHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCC-CceeeCCCceEEEEeCCC-CC---CHHHHH
Confidence 889999999998887 32 11 1244445555555555554211021 222112223556888887 32 678899
Q ss_pred HHHHH-CCeEeccCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhccC
Q 017259 304 LKMKE-RGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVLELDL 349 (374)
Q Consensus 304 ~~l~~-~Gi~v~~~~~~~lRi~~~~~~~~e~i~~~~~~l~~~~~~~~ 349 (374)
+.|.+ +||.+.++..+++||+++. .+++++++++++|+++++ ++
T Consensus 385 ~~l~~~~gi~v~~g~~~~iRis~~~-~~~e~i~~~~~~l~~~l~-~~ 429 (430)
T 2x5f_A 385 KHLIDKYSIGVIALNATDIRIAFSC-VEKDDIPHVFDSIAKAID-DL 429 (430)
T ss_dssp HHHHHHHCEECEECSSSEEEEEGGG-SCGGGHHHHHHHHHHHHH-HH
T ss_pred HHHHHhCCEEEecCCCCeEEEEEec-CCHHHHHHHHHHHHHHHH-hc
Confidence 99998 8999999877899999875 588999999999999987 53
No 87
>1xi9_A Putative transaminase; alanine aminotransferase, southeast collaboratory for structural genomics, secsg; HET: PLP; 2.33A {Pyrococcus furiosus} SCOP: c.67.1.1
Probab=99.97 E-value=8.6e-30 Score=240.48 Aligned_cols=294 Identities=14% Similarity=0.097 Sum_probs=203.3
Q ss_pred HHHHHHHHhccc--------CCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccCCc
Q 017259 23 FPVFAERLTSMF--------GYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDN 94 (374)
Q Consensus 23 ~~~l~~~l~~~~--------~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~~~ 94 (374)
..++++.+++++ ..+++++|+|+++|++.+++++ .++| |+|++.+|+|++....+...+...
T Consensus 80 ~~~l~~~la~~l~~~~g~~~~~~~v~~t~g~~~al~~~~~~l-----~~~g-----d~Vl~~~~~~~~~~~~~~~~g~~~ 149 (406)
T 1xi9_A 80 LPELRKAIVEREKRKNGVDITPDDVRVTAAVTEALQLIFGAL-----LDPG-----DEILVPGPSYPPYTGLVKFYGGKP 149 (406)
T ss_dssp CHHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHHHHHHHHH-----CCTT-----CEEEEEESCCHHHHHHHHHTTCEE
T ss_pred cHHHHHHHHHHHHHhcCCCCCHHHEEEcCChHHHHHHHHHHh-----CCCC-----CEEEEcCCCCccHHHHHHHcCCEE
Confidence 445555555543 2468999999999999999988 4567 999999999988765544332211
Q ss_pred cccccCCCCCCCceeccC-CCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEeccccC
Q 017259 95 EAIRGFGPLLPGHLKVDF-GDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSG 173 (374)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~-~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~~ 173 (374)
... +...+ -.+ .|+++|+++++ ++++++++++++|++|.+. +++.+++|.++|++||++||+||+|++
T Consensus 150 ~~v----~~~~~---~~~~~d~~~l~~~l~---~~~~~v~i~~p~nptG~~~-~~~~l~~i~~~a~~~~~~li~De~~~~ 218 (406)
T 1xi9_A 150 VEY----RTIEE---EDWQPDIDDIRKKIT---DRTKAIAVINPNNPTGALY-DKKTLEEILNIAGEYEIPVISDEIYDL 218 (406)
T ss_dssp EEE----EEEGG---GTSEECHHHHHHHCC---TTEEEEEEESSCTTTCCCC-CHHHHHHHHHHHHHHTCCEEEECTTTT
T ss_pred EEe----ecCCC---cCCcCCHHHHHHhhC---cCceEEEEECCCCCCCCCc-CHHHHHHHHHHHHHcCCEEEEEcCccc
Confidence 110 00000 001 17899998887 4688888988888999776 789999999999999999999999998
Q ss_pred CcccccCcccccCCCCC-cEE--Eeccccc-CCccchhhhe--eCH----HHHhhcCCCCCCCCCCCCHHHHHHHHHHHH
Q 017259 174 LARSGRMLASDWEEVRP-DMV--ILGKALG-GGVIPVSAVL--ADK----EVMLCIQPGEHGSTFGGNPLASAVAIASLD 243 (374)
Q Consensus 174 ~~~~g~~~~~~~~~~~~-d~~--s~sK~~~-~G~~~~G~~~--~~~----~~~~~~~~~~~~~~~~~~~~~~~aa~~al~ 243 (374)
+.+.+.......++... +++ |+||.++ +|+ |+||++ .++ ++.+.+....... ++.+++++.++.++++
T Consensus 219 ~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~-r~G~~~~~~~~~~~~~l~~~l~~~~~~~-~~~~~~~~~a~~~~l~ 296 (406)
T 1xi9_A 219 MTYEGEHISPGSLTKDVPVIVMNGLSKVYFATGW-RLGYMYFVDPENKLSEVREAIDRLARIR-LCPNTPAQFAAIAGLT 296 (406)
T ss_dssp CBSSSCCCCHHHHCSSSCEEEEEESTTTTCCGGG-CCEEEEEECTTCTTHHHHHHHHHHHHHT-CCSCSHHHHHHHHHHH
T ss_pred cccCCCCCCHHHcCCCceEEEEeccccccCCCcc-EEEEEEEecCchhHHHHHHHHHHHHHhh-cCCCHHHHHHHHHHHh
Confidence 76533322322222112 333 7899998 788 999998 888 8888776432223 6778889988888886
Q ss_pred HHhh--hcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEecc--CCCchhHHHHHHHHH-HCCeEeccCC-
Q 017259 244 VIRD--EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDK--TALPVSAYDICLKMK-ERGILAKPTH- 317 (374)
Q Consensus 244 ~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~~~~~~~~~l~-~~Gi~v~~~~- 317 (374)
...+ +++.++++++.+++.+.|++ +|++.......+.++|+.++. .. +..++.+.|+ ++||.+.++.
T Consensus 297 ~~~~~~~~~~~~~~~~~~~l~~~L~~----~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~~~l~~~~gi~v~~g~~ 369 (406)
T 1xi9_A 297 GPMDYLKEYMKKLKERRDYIYKRLNE----IPGISTTKPQGAFYIFPKIEVGPWK---NDKEFVLDVLHNAHVLFVHGSG 369 (406)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHHHHT----STTEECCCCCBSSEECCEECSCSCS---SHHHHHHHHHHHHCEECEEGGG
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHh----CCCCeeecCCeeEEEEEecCccCCC---CHHHHHHHHHHhCCEEEeCchh
Confidence 3221 23445555555555555543 332221112234555656653 22 5788999998 8899998753
Q ss_pred -----CCEEEEecCCCCCHHHHHHHHHHHHHHHhccC
Q 017259 318 -----DTIVRLTPPLSISSNELQEGSKALHDVLELDL 349 (374)
Q Consensus 318 -----~~~lRi~~~~~~~~e~i~~~~~~l~~~~~~~~ 349 (374)
.+++||+++ .+++++++++++|+++++ ++
T Consensus 370 f~~~~~~~lRis~~--~~~~~i~~~~~~l~~~l~-~~ 403 (406)
T 1xi9_A 370 FGEYGAGHFRAVFL--PPIEILEEAMDRFEKFMK-ER 403 (406)
T ss_dssp GCGGGTTBEEEECC--SCHHHHHHHHHHHHHHHH-HC
T ss_pred cCCCCCCEEEEEec--CCHHHHHHHHHHHHHHHH-HH
Confidence 679999976 899999999999999998 54
No 88
>1bs0_A Protein (8-amino-7-oxonanoate synthase); PLP-dependent acyl-COA synthase, biotin biosynthesis, 8-AMIN oxonanoate synthase; 1.65A {Escherichia coli} SCOP: c.67.1.4 PDB: 2g6w_A* 1dje_A* 1dj9_A*
Probab=99.97 E-value=3.7e-29 Score=234.28 Aligned_cols=303 Identities=19% Similarity=0.230 Sum_probs=220.7
Q ss_pred hHHHHHHHhccc--cCcC---CCCCcHHHHHHHHhcccCCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEe
Q 017259 2 KALQEQAEKLTL--SSRA---FYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSC 76 (374)
Q Consensus 2 ~a~~~~~~~~~~--~~~~---~~~~~~~~l~~~l~~~~~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~ 76 (374)
+++.+++.+... ..+. +..+...++++.+++++|.++.++++||+++++.+++++ .++| |.|++.
T Consensus 60 ~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~g~~~~i~~~sGt~a~~~~~~~~-----~~~g-----d~v~~~ 129 (384)
T 1bs0_A 60 RAWQQGAEQFGIGSGGSGHVSGYSVVHQALEEELAEWLGYSRALLFISGFAANQAVIAAM-----MAKE-----DRIAAD 129 (384)
T ss_dssp HHHHHHHHHHCSCCCSBTTTTCCCHHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHH-----CCTT-----CEEEEE
T ss_pred HHHHHHHHHhCCCCCCcCcccCChHHHHHHHHHHHHHhCCCcEEEeCCcHHHHHHHHHHh-----CCCC-----cEEEEc
Confidence 456666655221 1122 335778899999999999888899999999999999887 5667 899988
Q ss_pred ccCCCCcccccccccCCccccccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHH
Q 017259 77 CGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRD 156 (374)
Q Consensus 77 ~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~ 156 (374)
.++|... .......+ ..+..++..|++++++++++.+++++++++++++|++|.+.+ +++|.+
T Consensus 130 ~~~~~~~-~~~~~~~g------------~~~~~~~~~d~~~l~~~l~~~~~~~~~v~~~~~~nptG~~~~----l~~i~~ 192 (384)
T 1bs0_A 130 RLSHASL-LEAASLSP------------SQLRRFAHNDVTHLARLLASPCPGQQMVVTEGVFSMDGDSAP----LAEIQQ 192 (384)
T ss_dssp TTCCHHH-HHHHHTSS------------SEEEEECTTCHHHHHHHHHSCCSSCEEEEEESBCTTTCCBCC----HHHHHH
T ss_pred ccccHHH-HHHHHHcC------------CCEEEeCCCCHHHHHHHHHhcCCCCeEEEEeCCCCCCCCccC----HHHHHH
Confidence 8886433 32222222 223445566899999999865445889999999999999998 999999
Q ss_pred HHHhcCCEEEEeccccCC--cccccCcccccCCCCCcEE--EecccccCCccchhhheeCHHHHhhcCCCC--CCCCCCC
Q 017259 157 LCSKYNILMIADEIQSGL--ARSGRMLASDWEEVRPDMV--ILGKALGGGVIPVSAVLADKEVMLCIQPGE--HGSTFGG 230 (374)
Q Consensus 157 l~~~~~i~li~Dea~~~~--~~~g~~~~~~~~~~~~d~~--s~sK~~~~G~~~~G~~~~~~~~~~~~~~~~--~~~~~~~ 230 (374)
+|++||++||+||+|+.+ ++.+..+. ..++..+|++ |+||.++ . ++||+++++++.+.+.... ...+.+.
T Consensus 193 l~~~~~~~li~De~~~~~~~~~~~~~~~-~~~~~~~di~~~s~sK~~~--~-~GG~~~~~~~~~~~l~~~~~~~~~~~~~ 268 (384)
T 1bs0_A 193 VTQQHNGWLMVDDAHGTGVIGEQGRGSC-WLQKVKPELLVVTFGKGFG--V-SGAAVLCSSTVADYLLQFARHLIYSTSM 268 (384)
T ss_dssp HHHHTTCEEEEECTTTTTTSSGGGCCHH-HHTTCCCSEEEEESSSTTS--S-CCEEEEECHHHHHHHHHHCHHHHSSBCC
T ss_pred HHHHcCcEEEEECCcccceecCCCCchH-HhcCCCCcEEEeeccchhh--c-cCcEEEeCHHHHHHHHHhchhhhcCCCC
Confidence 999999999999999742 33343322 3344567877 8999997 2 4488989998888776421 2233467
Q ss_pred CHHHHHHHHHHHHHHhh---hcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCchhHHHHHHHHH
Q 017259 231 NPLASAVAIASLDVIRD---EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMK 307 (374)
Q Consensus 231 ~~~~~~aa~~al~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~ 307 (374)
+++.++++.++++.+.+ +++.++++++++++.+.|+++ ++.. ..+.+.++++.++... +..++.+.|.
T Consensus 269 ~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-----g~~~-~~~~~~~~~~~~~~~~---~~~~l~~~l~ 339 (384)
T 1bs0_A 269 PPAQAQALRASLAVIRSDEGDARREKLAALITRFRAGVQDL-----PFTL-ADSCSAIQPLIVGDNS---RALQLAEKLR 339 (384)
T ss_dssp CHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHTTS-----SCEE-CSCCSSBCCEEEESHH---HHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhc-----CCcc-cCCCCCEEEEEeCCHH---HHHHHHHHHH
Confidence 89999999999987752 256667777777777766554 1211 1245777888776422 5788999999
Q ss_pred HCCeEeccCC-------CCEEEEecCCCCCHHHHHHHHHHHHHH
Q 017259 308 ERGILAKPTH-------DTIVRLTPPLSISSNELQEGSKALHDV 344 (374)
Q Consensus 308 ~~Gi~v~~~~-------~~~lRi~~~~~~~~e~i~~~~~~l~~~ 344 (374)
++||.++++. .+++|++++..++++++++++++|+++
T Consensus 340 ~~gi~v~~~~~~~~~~~~~~~Ri~~~~~~~~~~i~~~~~~l~~~ 383 (384)
T 1bs0_A 340 QQGCWVTAIRPPTVPAGTARLRLTLTAAHEMQDIDRLLEVLHGN 383 (384)
T ss_dssp HTTEECCEECTTSSCTTCEEECCBCCTTCCHHHHHHHHHHHHHH
T ss_pred HCCcEEEeecCCCCCCCCceEEEEEcCCCCHHHHHHHHHHHHhh
Confidence 9999998752 378999998888999999999999864
No 89
>3e2y_A Kynurenine-oxoglutarate transaminase 3; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: GLN PMP; 2.26A {Mus musculus} SCOP: c.67.1.0 PDB: 2zjg_A* 3e2f_A* 3e2z_A*
Probab=99.97 E-value=3.3e-29 Score=236.61 Aligned_cols=302 Identities=14% Similarity=0.148 Sum_probs=203.9
Q ss_pred HHHHHHHHhcccC--------C-CeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccCC
Q 017259 23 FPVFAERLTSMFG--------Y-DMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCD 93 (374)
Q Consensus 23 ~~~l~~~l~~~~~--------~-~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~~ 93 (374)
..++++.++++++ . +++++++|+++|++.+++.+ ..+| |+|++..|+|+++.......+..
T Consensus 63 ~~~l~~~la~~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~~-----~~~g-----d~vl~~~p~~~~~~~~~~~~g~~ 132 (410)
T 3e2y_A 63 HPALVKALSCLYGKIYQRQIDPNEEILVAVGAYGSLFNSIQGL-----VDPG-----DEVIIMVPFYDCYEPMVRMAGAV 132 (410)
T ss_dssp CHHHHHHHHHHHHHHHTSCCCTTTSEEEESHHHHHHHHHHHHH-----CCTT-----CEEEEEESCCTTHHHHHHHTTCE
T ss_pred hHHHHHHHHHHHHHHhCCCCCCCCCEEEeCCcHHHHHHHHHHh-----cCCC-----CEEEEeCCCchhhHHHHHHcCCE
Confidence 4455555555432 3 68999999999999999988 5667 99999999998876555443322
Q ss_pred ccccccCCCCCCCc---eeccC-CCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEec
Q 017259 94 NEAIRGFGPLLPGH---LKVDF-GDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADE 169 (374)
Q Consensus 94 ~~~~~~~~~~~~~~---~~~~~-~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~De 169 (374)
..... ..+...+. ....+ .|+++++++++ ++++++++++++|++|.+. +++.+++|.++|++||+++|+||
T Consensus 133 ~~~~~-~~~~~~~g~~~~~~~~~~d~~~l~~~~~---~~~~~v~~~~p~nptG~~~-~~~~l~~l~~~~~~~~~~li~De 207 (410)
T 3e2y_A 133 PVFIP-LRSKPTDGMKWTSSDWTFDPRELESKFS---SKTKAIILNTPHNPLGKVY-TRQELQVIADLCVKHDTLCISDE 207 (410)
T ss_dssp EEEEE-CEECCCCSSCCBGGGEECCHHHHHTTCC---TTEEEEEEESSCTTTCCCC-CHHHHHHHHHHHHHHTCEEEEEC
T ss_pred EEEEe-ccccccccccccccCCcCCHHHHHhhcC---CCceEEEEeCCCCCCCcCc-CHHHHHHHHHHHHHcCcEEEEEh
Confidence 11110 00000000 00011 17889988876 5799999999999999877 78889999999999999999999
Q ss_pred cccCCcccccCc-ccccCC----CCCcEEEeccccc-CCccchhhheeCHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHH
Q 017259 170 IQSGLARSGRML-ASDWEE----VRPDMVILGKALG-GGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLD 243 (374)
Q Consensus 170 a~~~~~~~g~~~-~~~~~~----~~~d~~s~sK~~~-~G~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~al~ 243 (374)
+|+++.+.|..+ ...... ....+.|+||.++ +|+ |+||+++++++++.+.......+++.+++++.++.++++
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~g~~G~-r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~ 286 (410)
T 3e2y_A 208 VYEWLVYTGHTHVKIATLPGMWERTITIGSAGKTFSVTGW-KLGWSIGPAHLIKHLQTVQQNSFYTCATPLQAALAEAFW 286 (410)
T ss_dssp TTTTCBCTTCCCCCGGGSTTCGGGEEEEEEHHHHSSCGGG-CCEEEECCHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHH
T ss_pred hhhhcccCCCCCCCHHHcCCccCeEEEEecchhhcCCCCc-eEEEEEECHHHHHHHHHHHHhhccCCChHHHHHHHHHHH
Confidence 999887666422 222221 1123448999999 798 999999999988888765556688889999999998887
Q ss_pred HH-----hhhcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCc--------hhHHHHHHHHH-HC
Q 017259 244 VI-----RDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALP--------VSAYDICLKMK-ER 309 (374)
Q Consensus 244 ~~-----~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~--------~~~~~~~~~l~-~~ 309 (374)
.. ..+++.++.++..+..++.+.+....+ ++....+..+.++|+.+.....+ .+..+++++++ ++
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~ 365 (410)
T 3e2y_A 287 IDIKRMDDPECYFNSLPKELEVKRDRMVRLLNSV-GLKPIVPDGGYFIIADVSSLGADLSDMNSDEPYDYKFVKWMTKHK 365 (410)
T ss_dssp HHHTTTTSTTSHHHHHHHHHHHHHHHHHHHHHTT-TCEEEBCSBSSEEEEECGGGCCCCTTCCSSCCHHHHHHHHHHHHH
T ss_pred hhhccccchHHHHHHHHHHHHHHHHHHHHHHHHC-CCeecCCCccEEEEEEchhhhcccccccccccCHHHHHHHHHHHc
Confidence 41 112334444444444444444333332 33333344577778777542110 02347888765 66
Q ss_pred CeEeccCC-----------CCEEEEecCCCCCHHHHHHHHHHHHH
Q 017259 310 GILAKPTH-----------DTIVRLTPPLSISSNELQEGSKALHD 343 (374)
Q Consensus 310 Gi~v~~~~-----------~~~lRi~~~~~~~~e~i~~~~~~l~~ 343 (374)
||.+.++. .+++||++ ..+++++++++++|++
T Consensus 366 gv~v~~g~~f~~~~~~~~~~~~iRis~--~~~~e~l~~~l~~l~~ 408 (410)
T 3e2y_A 366 KLTAIPVSAFCDSKSKPHFEKLVRFCF--IKKDSTLDAAEEIFRA 408 (410)
T ss_dssp SEECEEGGGGSCTTTHHHHTTEEEEEC--CCCHHHHHHHHHHHHT
T ss_pred CEEEeCchhhCCCCCCCCCCCEEEEEE--cCCHHHHHHHHHHHHh
Confidence 99997742 48999994 4599999999999864
No 90
>3hdo_A Histidinol-phosphate aminotransferase; PSI-II, histidinol-phosphate aminotrans structural genomics, protein structure initiative; 1.61A {Geobacter metallireducens gs-15}
Probab=99.97 E-value=2.4e-29 Score=233.61 Aligned_cols=300 Identities=15% Similarity=0.137 Sum_probs=209.8
Q ss_pred hHHHHHHHhccccCcCCCCCcHHHHHHHHhcccC--CCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccC
Q 017259 2 KALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFG--YDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGC 79 (374)
Q Consensus 2 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~ 79 (374)
+|+.+++.+.......|+.+...++++++++++| .+++++|+|+++|++.+++.+ .++| |+|++..|+
T Consensus 46 ~a~~~~~~~~~~~~~~y~~~~~~~lr~~la~~~g~~~~~i~~t~g~~~al~~~~~~l-----~~~g-----d~Vl~~~p~ 115 (360)
T 3hdo_A 46 KAILEELGPDGAALRIYPSASSQKLREVAGELYGFDPSWIIMANGSDEVLNNLIRAF-----AAEG-----EEIGYVHPS 115 (360)
T ss_dssp HHHHHHHTTTCGGGGSCCCSSCHHHHHHHHHHHTCCGGGEEEESSHHHHHHHHHHHH-----CCTT-----CEEEEESSS
T ss_pred HHHHHHHhcccchhhcCCCCchHHHHHHHHHHhCcCcceEEEcCCHHHHHHHHHHHH-----hCCC-----CEEEEcCCC
Confidence 3455555443111223445567889999999887 568999999999999999988 5677 999999999
Q ss_pred CCCcccccccccCCccccccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHH
Q 017259 80 FHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCS 159 (374)
Q Consensus 80 yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~ 159 (374)
|++....+...+... ..++.++-..+++.++.. +++++++++++|++|.+.+ +++|.++|+
T Consensus 116 ~~~~~~~~~~~g~~~-------------~~v~~~~~~~~~~l~~~~--~~~~v~i~~p~nptG~~~~----~~~l~~l~~ 176 (360)
T 3hdo_A 116 YSYYGTLAEVQGARV-------------RTFGLTGDFRIAGFPERY--EGKVFFLTTPNAPLGPSFP----LEYIDELAR 176 (360)
T ss_dssp CTHHHHHHHHHTCEE-------------EEECBCTTSSBTTCCSSB--CSSEEEEESSCTTTCCCCC----HHHHHHHHH
T ss_pred hHHHHHHHHHCCCEE-------------EEeeCCCCCCHHHHHhhc--CCCEEEEeCCCCCCCCCcC----HHHHHHHHH
Confidence 988766555443221 122221100112212212 2457888888999999998 899999999
Q ss_pred hcCCEEEEeccccCCcccccCcccccCCCCCcEEEeccccc-CCccchhhheeCHHHHhhcCCCCCCCCCCCCHHHHHHH
Q 017259 160 KYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALG-GGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVA 238 (374)
Q Consensus 160 ~~~i~li~Dea~~~~~~~g~~~~~~~~~~~~d~~s~sK~~~-~G~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa 238 (374)
++|+++|+||+|+++...+........+....+.|+||.++ +|+ |+||+++++++.+.+.... .+++.++++++++
T Consensus 177 ~~~~~li~De~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~-r~G~~~~~~~~~~~~~~~~--~~~~~~~~~~~a~ 253 (360)
T 3hdo_A 177 RCAGMLVLDETYAEFAESNALELVRRHENVVVTRTLSKSYSLAGM-RIGLAIARPEVIAALDKIR--DHYNLDRLAQAAC 253 (360)
T ss_dssp HBSSEEEEECTTGGGSSCCCTHHHHHCSSEEEEEESTTTTSCTTS-CCEEEECCHHHHHHHHHHS--CSCCSCHHHHHHH
T ss_pred HCCCEEEEECChHhhCCcchhHHhccCCCEEEEecchHhhcCCcc-ceeeEeeCHHHHHHHHHhC--CCCCCCHHHHHHH
Confidence 99999999999997632221111122222233558999998 788 9999999999888876532 4577899999999
Q ss_pred HHHHHHHhh-hcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCchhHHHHHHHHHHCCeEeccCC
Q 017259 239 IASLDVIRD-EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTH 317 (374)
Q Consensus 239 ~~al~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~ 317 (374)
.++++.... ++..++++++.+++.+.|++. ++. ..++.+.++++.++.. +..++.+.|.++||.++++.
T Consensus 254 ~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~-----~~~-~~~~~~~~~~~~~~~~----~~~~l~~~l~~~gi~v~~~~ 323 (360)
T 3hdo_A 254 VAALRDQAYLSECCRRIRETREWFTTELRSI-----GYD-VIPSQGNYLFATPPDR----DGKRVYDGLYARKVLVRHFS 323 (360)
T ss_dssp HHHHHCHHHHHHHHHHHHHHHHHHHHHHHHT-----TCE-ECCCSSSEEEEECTTC----CHHHHHHHHHHTTEECBCCC
T ss_pred HHHhcCHHHHHHHHHHHHHHHHHHHHHHHHC-----CCE-EcCCCccEEEEECCCC----CHHHHHHHHHHCCEEEEECC
Confidence 998874211 234555555666666666544 221 2345677888877643 67899999999999998864
Q ss_pred ----CCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 017259 318 ----DTIVRLTPPLSISSNELQEGSKALHDVLE 346 (374)
Q Consensus 318 ----~~~lRi~~~~~~~~e~i~~~~~~l~~~~~ 346 (374)
.+++||+++ +++|+++++++|+++.+
T Consensus 324 ~~~~~~~iRis~~---~~~e~~~l~~al~~~~~ 353 (360)
T 3hdo_A 324 DPLLAHGMRISIG---TREEMEQTLAALKEIGE 353 (360)
T ss_dssp STTTTTSEEEECC---CHHHHHHHHHHHHHHHC
T ss_pred CCCCCCEEEEEcC---CHHHHHHHHHHHHHHhc
Confidence 489999944 89999999999998876
No 91
>3get_A Histidinol-phosphate aminotransferase; NP_281508.1, structural genomics, joint center for structural genomics; HET: LLP MSE; 2.01A {Campylobacter jejuni subsp}
Probab=99.97 E-value=4.4e-29 Score=232.21 Aligned_cols=289 Identities=16% Similarity=0.145 Sum_probs=206.7
Q ss_pred CCCCcHHHHHHHHhcccC--CCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccCCcc
Q 017259 18 FYNDKFPVFAERLTSMFG--YDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNE 95 (374)
Q Consensus 18 ~~~~~~~~l~~~l~~~~~--~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~ 95 (374)
|+.+...+++++++++++ .+++++++|++++++.+++.+ .++| |+|++..|+|++....+...+....
T Consensus 62 y~~~~~~~lr~~la~~~~~~~~~v~~~~g~~~a~~~~~~~l-----~~~g-----d~vl~~~~~~~~~~~~~~~~g~~~~ 131 (365)
T 3get_A 62 YPDDSMIELKSTLAQKYKVQNENIIIGAGSDQVIEFAIHSK-----LNSK-----NAFLQAGVTFAMYEIYAKQCGAKCY 131 (365)
T ss_dssp CCCTTCHHHHHHHHHHHTCCGGGEEEESSHHHHHHHHHHHH-----CCTT-----CEEEECSSCCTHHHHHHHHHTCEEE
T ss_pred CCCCChHHHHHHHHHHhCCCcceEEECCCHHHHHHHHHHHH-----hCCC-----CEEEEeCCChHHHHHHHHHcCCEEE
Confidence 444445789999999887 568999999999999999988 5667 9999999999877655544332211
Q ss_pred ccccCCCC-CCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEeccccCC
Q 017259 96 AIRGFGPL-LPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGL 174 (374)
Q Consensus 96 ~~~~~~~~-~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~~~ 174 (374)
.. +. ..+. .|+++++++++ ++++++++++++|++|.+. +.+.+++|+++| ++|+++|+||+|+++
T Consensus 132 ~v----~~~~~~~-----~d~~~l~~~l~---~~~~~v~~~~p~nptG~~~-~~~~l~~l~~~~-~~~~~li~De~~~~~ 197 (365)
T 3get_A 132 KT----QSITHNL-----DEFKKLYETHK---DEIKLIFLCLPNNPLGECL-DASEATEFIKGV-NEDCLVVIDAAYNEF 197 (365)
T ss_dssp EC----SSSSCCH-----HHHHHHHHHTT---TTEEEEEEESSCTTTCCCC-CHHHHHHHHHTS-CTTSEEEEECTTHHH
T ss_pred EE----ecCCCCC-----CCHHHHHHHhC---CCCCEEEEcCCCCCCCCCc-CHHHHHHHHHhC-CCCcEEEEeCccHHH
Confidence 11 11 0111 26788888886 5899999988899999888 566666666666 679999999999976
Q ss_pred cc--cc-cCc-cccc---CCCCCcEEEeccccc-CCccchhhheeCHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHh
Q 017259 175 AR--SG-RML-ASDW---EEVRPDMVILGKALG-GGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIR 246 (374)
Q Consensus 175 ~~--~g-~~~-~~~~---~~~~~d~~s~sK~~~-~G~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~al~~~~ 246 (374)
.+ .+ ... .... .+....+.|+||.++ +|+ |+||+++++++.+.+... ..+++.+.+++.++.++++...
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~-r~G~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~ 274 (365)
T 3get_A 198 ASFKDSKKHLEPCELIKEFDNVLYLGTFSKLYGLGGL-RIGYGIANANIISAFYKL--RAPFNVSNLALKAAVAAMDDDE 274 (365)
T ss_dssp HHHHCGGGCCCHHHHHHHCTTEEEEEESSSTTSCTTT-CCEEEEECHHHHHHHHHH--SCTTCSCHHHHHHHHHHHTCHH
T ss_pred hcccCCcccccHhHHhccCCCEEEEeecchHhcCcch-heEEEEcCHHHHHHHHHh--cCCCCcCHHHHHHHHHHhCCHH
Confidence 42 22 111 1111 122223448999998 798 999999999988887653 2346789999999888887321
Q ss_pred h-hcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCchhHHHHHHHHHHCCeEeccCC---CCEEE
Q 017259 247 D-EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTH---DTIVR 322 (374)
Q Consensus 247 ~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~---~~~lR 322 (374)
. ++..++++++.+++.+.|++. ++. ..++.+.++++.++.. +..++.+.|.++||.++++. .+++|
T Consensus 275 ~~~~~~~~~~~~~~~l~~~l~~~-----g~~-~~~~~~~~~~~~~~~~----~~~~~~~~l~~~gi~v~~g~~~~~~~iR 344 (365)
T 3get_A 275 FTEKTLENNFSQMELYKEFAKKH-----NIK-IIDSYTNFITYFFDEK----NSTDLSEKLLKKGIIIRNLKSYGLNAIR 344 (365)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHT-----TCE-ECCCSSSEEEEECSSS----CHHHHHHHHHTTTEECEECGGGTCSEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHhC-----CCE-ECCCCCeEEEEECCCC----CHHHHHHHHHHCCEEEEECccCCCCEEE
Confidence 1 234455555555555555544 221 2345677888887653 47899999999999999876 69999
Q ss_pred EecCCCCCHHHHHHHHHHHHHHHh
Q 017259 323 LTPPLSISSNELQEGSKALHDVLE 346 (374)
Q Consensus 323 i~~~~~~~~e~i~~~~~~l~~~~~ 346 (374)
|+++ +++++++++++|+++++
T Consensus 345 is~~---~~~~i~~l~~~l~~~l~ 365 (365)
T 3get_A 345 ITIG---TSYENEKFFTEFDKILR 365 (365)
T ss_dssp EECC---CHHHHHHHHHHHHHHHC
T ss_pred EEcC---CHHHHHHHHHHHHHHhC
Confidence 9954 89999999999998763
No 92
>2dr1_A PH1308 protein, 386AA long hypothetical serine aminotransferase; PLP, structural genomics, NPPSFA; HET: PLP; 1.90A {Pyrococcus horikoshii}
Probab=99.97 E-value=1.5e-28 Score=230.14 Aligned_cols=294 Identities=15% Similarity=0.126 Sum_probs=215.4
Q ss_pred CCcHHHHHHHHhcccCCC---eEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCC--cccccccccCCc
Q 017259 20 NDKFPVFAERLTSMFGYD---MVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHG--RTLAAISMSCDN 94 (374)
Q Consensus 20 ~~~~~~l~~~l~~~~~~~---~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg--~~~~~~~~~~~~ 94 (374)
.+.++++++++++++|.+ ++++++||++|++.+++.+ ..+| |+|++.+++||+ ....+...+...
T Consensus 52 ~~~~~~~~~~la~~~g~~~~~~v~~~~g~t~a~~~~~~~l-----~~~g-----d~vl~~~~~~~~~~~~~~~~~~g~~~ 121 (386)
T 2dr1_A 52 RKVHMDTVERLREFLEVEKGEVLLVPSSGTGIMEASIRNG-----VSKG-----GKVLVTIIGAFGKRYKEVVESNGRKA 121 (386)
T ss_dssp HHHHHHHHHHHHHHHTCSSSEEEEESSCHHHHHHHHHHHH-----SCTT-----CEEEEEESSHHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHHHHHHHhCCCCCcEEEEeCChHHHHHHHHHHh-----hcCC-----CeEEEEcCCchhHHHHHHHHHhCCce
Confidence 456778999999988764 5899999999999999988 4567 999999999987 332222222111
Q ss_pred cccccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEeccccCC
Q 017259 95 EAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGL 174 (374)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~~~ 174 (374)
... +...+. ..|+++|++++++. ++++++++++++|++|.+.+ +++|.++|++||++||+||+|+.+
T Consensus 122 ~~v----~~~~~~----~~d~~~l~~~l~~~-~~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~D~a~~~~ 188 (386)
T 2dr1_A 122 VVL----EYEPGK----AVKPEDLDDALRKN-PDVEAVTITYNETSTGVLNP----LPELAKVAKEHDKLVFVDAVSAMG 188 (386)
T ss_dssp EEE----ECCTTC----CCCHHHHHHHHHHC-TTCCEEEEESEETTTTEECC----HHHHHHHHHHTTCEEEEECTTTBT
T ss_pred EEE----ecCCCC----CCCHHHHHHHHhcC-CCCcEEEEEeecCCcchhCC----HHHHHHHHHHcCCeEEEEcccccc
Confidence 110 100000 13899999999653 46889999999999999988 999999999999999999999843
Q ss_pred cccccCcccccCCCCCcEE--EecccccCCccchhhheeCHHHHhhcCCC------------------CCCCCCCCCHHH
Q 017259 175 ARSGRMLASDWEEVRPDMV--ILGKALGGGVIPVSAVLADKEVMLCIQPG------------------EHGSTFGGNPLA 234 (374)
Q Consensus 175 ~~~g~~~~~~~~~~~~d~~--s~sK~~~~G~~~~G~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~ 234 (374)
.. .+... ...+|++ |+||+++++. ++|++++++++.+.+.+. ....+++.+.++
T Consensus 189 ~~---~~~~~--~~~~di~~~s~sK~~~~~~-g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (386)
T 2dr1_A 189 GA---DIKFD--KWGLDVVFSSSQKAFGVPP-GLAIGAFSERFLEIAEKMPERGWYFDIPLYVKYLKEKESTPSTPPMPQ 262 (386)
T ss_dssp TB---CCCTT--TTTCSEEEEETTSTTCCCS-SCEEEEECHHHHHHHTTCTTCCSTTCHHHHHHHHHHHSSCSSCCCHHH
T ss_pred Cc---ccccc--ccCCcEEEEeccccccCCC-ceEEEEECHHHHHHHhcCCCCceEEeHHHHHHhhccCCCCCCCCCHHH
Confidence 21 11222 2345666 5569999776 789999999888776431 123456778899
Q ss_pred HHHHHHHHHHHhhh----cHHHHHHHHHHHHHHHHHHHHHhCCCceee-EEEEeeeEEEEeccCCCchhHHHHHHHHHHC
Q 017259 235 SAVAIASLDVIRDE----KLAERSAHLGEELRQHLFKIQQQFPNYVKE-VRGRGLFNAVEFDKTALPVSAYDICLKMKER 309 (374)
Q Consensus 235 ~~aa~~al~~~~~~----~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~ 309 (374)
++++.++++.+.+. ++.++++++.+++.+.|++.. +. .... ....+.++++.++... +..++.+.|.++
T Consensus 263 ~~a~~~~l~~~~~~g~~~~~~~~~~~~~~~l~~~L~~~g--~~-~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~~~ 336 (386)
T 2dr1_A 263 VFGINVALRIIEKMGGKEKWLEMYEKRAKMVREGVREIG--LD-ILAEPGHESPTITAVLTPPGI---KGDEVYEAMRKR 336 (386)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHTT--CC-BSSCTTCBCSSEEEEECCTTC---CHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHcC--Ce-eCcCccccCCceEEEEcCCCC---CHHHHHHHHHHC
Confidence 99999999876543 567778888888888887752 21 2111 0114677888776433 678999999999
Q ss_pred CeEeccCC----CCEEEEecCCCCCHHHHHHHHHHHHHHHhccC
Q 017259 310 GILAKPTH----DTIVRLTPPLSISSNELQEGSKALHDVLELDL 349 (374)
Q Consensus 310 Gi~v~~~~----~~~lRi~~~~~~~~e~i~~~~~~l~~~~~~~~ 349 (374)
||.++++. .+++||+++...+++++++++++|+++++ ++
T Consensus 337 gi~v~~~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~-~~ 379 (386)
T 2dr1_A 337 GFELAKGYGSVKEKTFRIGHMGYMKFEDIQEMLDNLREVIN-EL 379 (386)
T ss_dssp TEECEECCGGGTTTEEEEECCSSCCHHHHHHHHHHHHHHHH-HH
T ss_pred CeEEecCccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHH-Hc
Confidence 99998863 57999998888899999999999999987 54
No 93
>2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase, structural genomics; HET: PLP; 2.40A {Archaeoglobus fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A*
Probab=99.97 E-value=8.5e-30 Score=237.33 Aligned_cols=289 Identities=14% Similarity=0.153 Sum_probs=215.2
Q ss_pred CCCCCcHHHHHHH-HhcccCCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccCCcc
Q 017259 17 AFYNDKFPVFAER-LTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNE 95 (374)
Q Consensus 17 ~~~~~~~~~l~~~-l~~~~~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~ 95 (374)
.++.+...+++++ ++++++.+++++++|+++|++.+++++ ..+| |+|++.+++|++........+..
T Consensus 49 ~~~~~~~~~l~~~~la~~~~~~~v~~~~g~t~a~~~~~~~~-----~~~g-----d~vl~~~~~~~~~~~~~~~~g~~-- 116 (371)
T 2e7j_A 49 EIKTPPIHDFIHNQLPKFLGCDVARVTNGAREAKFAVMHSL-----AKKD-----AWVVMDENCHYSSYVAAERAGLN-- 116 (371)
T ss_dssp ----CCHHHHHHTHHHHHTTSSEEEEESSHHHHHHHHHHHH-----CCTT-----CEEEEETTCCHHHHHHHHHTTCE--
T ss_pred hhHHHHHHHHHHHHHHHHcCCCEEEEeCChHHHHHHHHHHH-----hCCC-----CEEEEccCcchHHHHHHHHcCCe--
Confidence 3567889999999 999998789999999999999999988 4566 99999999998876654332211
Q ss_pred ccccCCCCCCCceecc--CC-----CHHHHHHHHHhcC--CcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEE
Q 017259 96 AIRGFGPLLPGHLKVD--FG-----DITALEKIFKESG--DQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMI 166 (374)
Q Consensus 96 ~~~~~~~~~~~~~~~~--~~-----d~~~le~~l~~~~--~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li 166 (374)
+..++ .+ |+++|+++++++. ++++++++++++|++|.+.+ +++|.++|++||++||
T Consensus 117 -----------~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~v~~~~~~nptG~~~~----~~~i~~~~~~~~~~li 181 (371)
T 2e7j_A 117 -----------IALVPKTDYPDYAITPENFAQTIEETKKRGEVVLALITYPDGNYGNLPD----VKKIAKVCSEYDVPLL 181 (371)
T ss_dssp -----------EEEECCCCTTTCCCCHHHHHHHHHHHTTTSCEEEEEEESSCTTTCCCCC----HHHHHHHHHTTTCCEE
T ss_pred -----------EEEeecccCCCCCcCHHHHHHHHHhhcccCCeEEEEEECCCCCCcccCC----HHHHHHHHHHcCCeEE
Confidence 22222 22 7999999998542 47899999999999999998 9999999999999999
Q ss_pred EeccccCCcccccCcccccCCCCCcEE--EecccccCCccchhhheeCHHHHhh-cCCCCC--CC-----CCCCCHHHHH
Q 017259 167 ADEIQSGLARSGRMLASDWEEVRPDMV--ILGKALGGGVIPVSAVLADKEVMLC-IQPGEH--GS-----TFGGNPLASA 236 (374)
Q Consensus 167 ~Dea~~~~~~~g~~~~~~~~~~~~d~~--s~sK~~~~G~~~~G~~~~~~~~~~~-~~~~~~--~~-----~~~~~~~~~~ 236 (374)
+||+|+.+.. + +....+ .+|++ |+||+++++. |+|++++++++.+. +..... .. ++..+...++
T Consensus 182 ~D~a~~~~~~-~--~~~~~~--~~di~~~s~sK~~~~~~-~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (371)
T 2e7j_A 182 VNGAYAIGRM-P--VSLKEI--GADFIVGSGHKSMAASG-PIGVMGMKEEWAEIVLRRSEKYKNKEVELLGCTARGATII 255 (371)
T ss_dssp EECTTTBTTB-C--CCHHHH--TCSEEEEEHHHHSSCCS-SCEEEEECTTTTTTTTCBCSSCTTSBGGGTTCCCCSHHHH
T ss_pred EECccccCCC-C--CChhhc--CCCEEEecCCcCCCCCC-CcEEEEEechhhhhhccccccCcccccccccCCcCHHHHH
Confidence 9999985421 1 122222 34555 6789999888 99999999888777 665433 22 4556777777
Q ss_pred HHHHHHHHHhhhcHHHHH--HHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCchhHHHHHHHHHHCCeEec
Q 017259 237 VAIASLDVIRDEKLAERS--AHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAK 314 (374)
Q Consensus 237 aa~~al~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~ 314 (374)
++.++++.+.. ++.+++ +++.+++.+.|+++ .+ .........+.++++.++ +..++.+.|.++||.+.
T Consensus 256 a~~~~l~~~~~-~~~~~~~~~~~~~~l~~~L~~~--~~-~~~~~~~~~~~~~~~~~~------~~~~~~~~l~~~gi~~~ 325 (371)
T 2e7j_A 256 TLMASFPHVRE-RIKRWDEEVEKARRFAAEMEKL--GI-KQLGDNPHNHDLMFFHAE------VLYEISKKAKGGRFFLY 325 (371)
T ss_dssp HHHHHHHHHHH-HGGGHHHHHHHHHHHHHHHHHT--TC-EEESSSSCCSSEEEEECH------HHHHHHHHSSSGGGHHH
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHc--Cc-EEecCCCccCceEEEECC------CHHHHHHHHHHCCEEEE
Confidence 77788887655 566777 78888888888765 22 111111113677888775 36789999999999987
Q ss_pred c--------C-CCCEEE-EecCCC-CCHHHHHHHHHHHHHHHhccC
Q 017259 315 P--------T-HDTIVR-LTPPLS-ISSNELQEGSKALHDVLELDL 349 (374)
Q Consensus 315 ~--------~-~~~~lR-i~~~~~-~~~e~i~~~~~~l~~~~~~~~ 349 (374)
+ + ..+++| ++++.. .+++++++++++|+++++ ++
T Consensus 326 ~~~~~~~~~g~~~~~iRii~~~~~~~~~~~i~~~~~~l~~~~~-~~ 370 (371)
T 2e7j_A 326 RELKSRKIHGIKPGLTRYFKLSTYGLSDEEVDYVLNAFKEIIE-KY 370 (371)
T ss_dssp HHHHHTTEECSCTTCCSEEEEECTTCCHHHHHHHHHHHHHHHH-HC
T ss_pred eccccccccCCCCCceEEEEeeccCCCHHHHHHHHHHHHHHHH-hc
Confidence 6 1 157899 998877 899999999999999987 54
No 94
>1fg7_A Histidinol phosphate aminotransferase; HISC, histidine biosynthesis, pyridoxal PH montreal-kingston bacterial structural genomics initiative; HET: PMP; 1.50A {Escherichia coli} SCOP: c.67.1.1 PDB: 1fg3_A* 1gew_A* 1gex_A* 1gey_A* 1iji_A*
Probab=99.96 E-value=1.1e-28 Score=228.78 Aligned_cols=287 Identities=15% Similarity=0.154 Sum_probs=203.5
Q ss_pred CCCCcHHHHHHHHhcccCC--CeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccCCcc
Q 017259 18 FYNDKFPVFAERLTSMFGY--DMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNE 95 (374)
Q Consensus 18 ~~~~~~~~l~~~l~~~~~~--~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~ 95 (374)
|+.+...++++.++++++. +++++++|++++++.+++++. ++| +|+|++..|+|+++...+...+....
T Consensus 55 Y~~~~~~~lr~~la~~~~~~~~~v~~~~G~~~ai~~~~~~~~-----~~g----~d~Vl~~~p~~~~~~~~~~~~g~~~~ 125 (356)
T 1fg7_A 55 YPECQPKAVIENYAQYAGVKPEQVLVSRGADEGIELLIRAFC-----EPG----KDAILYCPPTYGMYSVSAETIGVECR 125 (356)
T ss_dssp CCCSSCHHHHHHHHHHHTSCGGGEEEESHHHHHHHHHHHHHC-----CTT----TCEEEECSSSCTHHHHHHHHHTCEEE
T ss_pred CCCccHHHHHHHHHHHhCCChHHEEEcCCHHHHHHHHHHHHh-----CCC----CCEEEEeCCChHHHHHHHHHcCCEEE
Confidence 4455578899999998865 589999999999999999883 233 37999999999987766554432211
Q ss_pred ccccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEeccccCCc
Q 017259 96 AIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLA 175 (374)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~~~~ 175 (374)
. .+...+.. .|+++++++++ +++++++++++|++|.+. +.+++++|.++|+ +|+++|+||+|++++
T Consensus 126 ~----v~~~~~~~----~d~~~l~~~i~----~~~~v~l~~p~nptG~~~-~~~~l~~l~~~~~-~~~~li~De~~~~~~ 191 (356)
T 1fg7_A 126 T----VPTLDNWQ----LDLQGISDKLD----GVKVVYVCSPNNPTGQLI-NPQDFRTLLELTR-GKAIVVADEAYIEFC 191 (356)
T ss_dssp E----CCCCTTSC----CCHHHHHTSCT----TEEEEEEESSCTTTCCCC-CHHHHHHHHHHHT-TTCEEEEECTTGGGS
T ss_pred E----eeCCCCCC----CCHHHHHHHhc----CCCEEEEeCCCCCCCCCC-CHHHHHHHHHhCC-CCCEEEEEccchhhc
Confidence 1 11111100 27888877764 688888888899999877 7899999999999 999999999999875
Q ss_pred ccccCccc-ccCCCCCcEEEeccccc-CCccchhhheeCHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHh---hhcH
Q 017259 176 RSGRMLAS-DWEEVRPDMVILGKALG-GGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIR---DEKL 250 (374)
Q Consensus 176 ~~g~~~~~-~~~~~~~d~~s~sK~~~-~G~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~al~~~~---~~~~ 250 (374)
........ ..++....+.|+||.++ +|+ |+||+++++++.+.+... ..+++.+++++.++.++++... -++.
T Consensus 192 ~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~-r~G~~~~~~~~~~~l~~~--~~~~~~~~~~~~a~~~~l~~~~~~~~~~~ 268 (356)
T 1fg7_A 192 PQASLAGWLAEYPHLAILRTLSKAFALAGL-RCGFTLANEEVINLLMKV--IAPYPLSTPVADIAAQALSPQGIVAMRER 268 (356)
T ss_dssp GGGCSGGGTTTCTTEEEEEESSSTTCCGGG-CCEEEEECHHHHHHHHHH--SCSSCSCHHHHHHHHHHTSHHHHHHHHHH
T ss_pred CCCcHHHHHhhCCCEEEEecchHhhcCchh-hhEEEEeCHHHHHHHHHh--cCCCCCCHHHHHHHHHHhcCccHHHHHHH
Confidence 32121121 11122223459999998 798 999999999988887643 3355789999998888886532 1233
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCchhHHHHHHHHHHCCeEecc-CC----CCEEEEec
Q 017259 251 AERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKP-TH----DTIVRLTP 325 (374)
Q Consensus 251 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~-~~----~~~lRi~~ 325 (374)
.++++++++++.+.|++ ++++....++.++++++.++ +..++.+.|.++||.+++ +. .+++||++
T Consensus 269 ~~~~~~~~~~l~~~L~~----~~~~~~~~~~~~~~~~~~~~------~~~~l~~~L~~~gI~v~~~g~~~~~~~~iRis~ 338 (356)
T 1fg7_A 269 VAQIIAEREYLIAALKE----IPCVEQVFDSETNYILARFK------ASSAVFKSLWDQGIILRDQNKQPSLSGCLRITV 338 (356)
T ss_dssp HHHHHHHHHHHHHHHHH----STTEEEECCCSSSEEEEEET------THHHHHHHHHHTTEECEECTTSTTCTTEEEEEC
T ss_pred HHHHHHHHHHHHHHHHh----CCCceEECCCCCeEEEEECC------CHHHHHHHHHHCCEEEEECCCCCCCCCeEEEEe
Confidence 44555555555555554 32222223446788888776 357899999999999998 42 46999995
Q ss_pred CCCCCHHHHHHHHHHHHH
Q 017259 326 PLSISSNELQEGSKALHD 343 (374)
Q Consensus 326 ~~~~~~e~i~~~~~~l~~ 343 (374)
+ +++++++++++|++
T Consensus 339 ~---~~~e~~~~~~~l~~ 353 (356)
T 1fg7_A 339 G---TREESQRVIDALRA 353 (356)
T ss_dssp C---CHHHHHHHHHHHHT
T ss_pred C---CHHHHHHHHHHHHh
Confidence 4 68999999998865
No 95
>3rq1_A Aminotransferase class I and II; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta structure, cytosol; HET: AKG GOL; 2.20A {Veillonella parvula}
Probab=99.96 E-value=4.8e-29 Score=236.23 Aligned_cols=295 Identities=12% Similarity=0.110 Sum_probs=206.4
Q ss_pred cHHHHHHHHhcccCCC---eEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccCCccccc
Q 017259 22 KFPVFAERLTSMFGYD---MVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIR 98 (374)
Q Consensus 22 ~~~~l~~~l~~~~~~~---~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~ 98 (374)
+++.+++++....+.+ ++++|+||++|+..+++.+ .++| |+|++..|+|+++...+...+......
T Consensus 85 lr~~ia~~~~~~~~~~~~~~i~~t~g~~~al~~~~~~l-----~~~g-----d~Vl~~~p~~~~~~~~~~~~g~~~~~v- 153 (418)
T 3rq1_A 85 FLCAAEKECFGNFRPEGHIRSIATAGGTGGIHHLIHNY-----TEPG-----DEVLTADWYWGAYRVICSDTGRTLVTY- 153 (418)
T ss_dssp HHHHHHHHHHGGGCCSSEEEEEEESHHHHHHHHHHHHH-----SCTT-----CEEEEESSCCTHHHHHHHHTTCEEEEE-
T ss_pred HHHHHHHHHhcccCccccccEEECCchHHHHHHHHHHh-----cCCC-----CEEEECCCCchhHHHHHHHcCCEEEEE-
Confidence 3444555554444677 9999999999999999988 5677 999999999988766555444322211
Q ss_pred cCCCCC-CCceeccCCCHHHHHHHHHhc--CCcEEEEEEccc-cCCCCcccCChhHHHHHHHHHH------hcCCEEEEe
Q 017259 99 GFGPLL-PGHLKVDFGDITALEKIFKES--GDQIAGFLFEPI-QGEAGVIIPPDGYLKAVRDLCS------KYNILMIAD 168 (374)
Q Consensus 99 ~~~~~~-~~~~~~~~~d~~~le~~l~~~--~~~~~~vi~~~~-~~~~g~~~~~~~~l~~l~~l~~------~~~i~li~D 168 (374)
+.. .+. ..|+++++++++++ ++..++++++++ +|++|.+. +.+.+++|+++|+ +||++||+|
T Consensus 154 ---~~~~~~~----~~d~~~l~~~l~~~~~~~~~~~vi~~~p~~NPtG~~~-~~~~l~~l~~~~~~~~~~~~~~~~li~D 225 (418)
T 3rq1_A 154 ---SLFDEHN----NFNHEAFQNRVNELAAKQTNVVVIFNTPGNNPTGYSI-EDKDWDSILNFLKDLVAIGRNNVIIGID 225 (418)
T ss_dssp ---CSBCTTS----SBCHHHHHHHHHHHHHHCSEEEEEEECSSCTTTCCCC-CHHHHHHHHHHHHHHHHTSSCEEEEEEE
T ss_pred ---eeeCCCC----CcCHHHHHHHHHHhhccCCCEEEEEeCCCCCCCCCCC-CHHHHHHHHHHHHHhhhccCCCeEEEEe
Confidence 110 010 11799999998752 123457777777 88899777 7888999999999 899999999
Q ss_pred ccccCCccccc---CcccccCCCCCc---EE--Eeccccc-CCccchhhhee---CHHHHhhcCCCCCC----CCCCCCH
Q 017259 169 EIQSGLARSGR---MLASDWEEVRPD---MV--ILGKALG-GGVIPVSAVLA---DKEVMLCIQPGEHG----STFGGNP 232 (374)
Q Consensus 169 ea~~~~~~~g~---~~~~~~~~~~~d---~~--s~sK~~~-~G~~~~G~~~~---~~~~~~~~~~~~~~----~~~~~~~ 232 (374)
|+|.++++.+. .+.....+..++ ++ ||||.++ +|+ |+||+++ ++++.+.+...... .....+.
T Consensus 226 e~y~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~~~~G~-r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (418)
T 3rq1_A 226 VAYLDYSGEKDEVRAFFNKFSHLPKEILTCVCYSLSKGFTMYGQ-RVGAMIGISDDEEIADEFFEVNKSTSRATWSNICR 304 (418)
T ss_dssp CTTGGGSSCHHHHHGGGGGGTTCCTTEEEEEEEESTTTTTCCSS-CCEEEEEEESSHHHHHHHHHHHHHHHHHHTSSCCH
T ss_pred cccccccCChHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCcCC-cceEEEEEeCCHHHHHHHHHHHHHHHhhccCCCch
Confidence 99998876653 122223344455 22 8999998 699 9999998 88888877643211 1235688
Q ss_pred HHHHHHHHHHHHHh------h--hcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCchhHHHHHH
Q 017259 233 LASAVAIASLDVIR------D--EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICL 304 (374)
Q Consensus 233 ~~~~aa~~al~~~~------~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 304 (374)
+++.++.++++... . .++.++++++.+++.+.|++++ ++ +. ....+.++|+.++ +..++++
T Consensus 305 ~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g--~~-~~--~~~~~~~~~~~~~------~~~~~~~ 373 (418)
T 3rq1_A 305 PAMRTMANIVADPAKFKEYEAERNCYYQLIRDRADIFKQEAAQVG--LP-ML--PYRGGFFITIPTD------SANAICE 373 (418)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT--CC-CC--CCCSSSEEEEECT------THHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CC-CC--CCCceEEEEcCCC------CHHHHHH
Confidence 88888877764321 1 1345566667777777776652 21 11 1223445555443 5678999
Q ss_pred HHHHCCeEeccCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhccCC
Q 017259 305 KMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVLELDLP 350 (374)
Q Consensus 305 ~l~~~Gi~v~~~~~~~lRi~~~~~~~~e~i~~~~~~l~~~~~~~~~ 350 (374)
.|.++||.++++ ++++||++. ..+++++++++++|+++++ ++.
T Consensus 374 ~l~~~gi~v~~g-~~~iRis~~-~~~~~~i~~~~~~l~~~l~-~~~ 416 (418)
T 3rq1_A 374 ELKKEHIYVIAL-ANGIRIAAC-GIPKCQMTGLAEKIYNAMK-SLG 416 (418)
T ss_dssp HHHHTTEECEEC-SSEEEEEGG-GSCHHHHTTHHHHHHHHHH-HTT
T ss_pred HHHhCCEEEecC-CCCeEEEEe-cCCHHHHHHHHHHHHHHHH-HHh
Confidence 999999999998 678999955 4699999999999999998 664
No 96
>3qgu_A LL-diaminopimelate aminotransferase; L-lysine, pyridoxal-5' phosphate, chamydomonas reinhardtii; HET: GOL; 1.55A {Chlamydomonas reinhardtii}
Probab=99.96 E-value=2.2e-29 Score=240.88 Aligned_cols=317 Identities=12% Similarity=0.102 Sum_probs=215.0
Q ss_pred hHHHHHHHhcc--ccCcCC-CCCcHHHHHHHHhccc------CCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccE
Q 017259 2 KALQEQAEKLT--LSSRAF-YNDKFPVFAERLTSMF------GYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAI 72 (374)
Q Consensus 2 ~a~~~~~~~~~--~~~~~~-~~~~~~~l~~~l~~~~------~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~ 72 (374)
+|+.+++.+.. .....| +.+...++++.+++++ ..+++++++|+++++..+ ..+ ..+| |+
T Consensus 89 ~a~~~~~~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~g~~~~~~~i~~t~G~~~al~~~-~~l-----~~~g-----d~ 157 (449)
T 3qgu_A 89 DAMAKAAAGLATREGYSGYGAEQGQGALREAVASTFYGHAGRAADEIFISDGSKCDIARI-QMM-----FGSK-----PT 157 (449)
T ss_dssp HHHHHHHHGGGGSCCCCCSTTTTCCHHHHHHHHHHHHTTTTCCGGGEEEESCHHHHHHHH-HHH-----HCSS-----SC
T ss_pred HHHHHHHHhhccccCCCCCCCCCCcHHHHHHHHHHHHcCCCCCHHHEEEccCHHHHHHHH-HHH-----hCCC-----CE
Confidence 46666666432 111122 3355778888888876 456899999999999988 555 3566 99
Q ss_pred EEEeccCCCCcccccccccCCccccccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHH
Q 017259 73 IVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLK 152 (374)
Q Consensus 73 vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~ 152 (374)
|++.+|+|+++...+...+..+.+... ...++..+++++.+.+...+.+. ++++++++++++|++|.+. +.+.++
T Consensus 158 Vl~~~p~~~~~~~~~~~~g~~g~~~~~---~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~l~~p~NPtG~~~-~~~~l~ 232 (449)
T 3qgu_A 158 VAVQDPSYPVYVDTSVMMGMTGDHNGT---GFDGIEYMVCNPDNHFFPDLSKA-KRTDIIFFCSPNNPTGAAA-TRAQLT 232 (449)
T ss_dssp EEEEESCCTHHHHHHHHHTCSCCBCSS---SBTTEEEEECCGGGTTCCCGGGC-CCCSEEEEESSCTTTCCCC-CHHHHH
T ss_pred EEEcCCCChhHHHHHHHcCCccccccc---ccceeEEEecccccCCcCChhHc-CCCCEEEEeCCCCCCCCcC-CHHHHH
Confidence 999999999887666555433111100 00123344443221111112222 4678888888888899877 899999
Q ss_pred HHHHHHHhcCCEEEEeccccCCcccccC-cccccC----CCCCcEEEeccccc-CCccchhhheeCHHHHhh--------
Q 017259 153 AVRDLCSKYNILMIADEIQSGLARSGRM-LASDWE----EVRPDMVILGKALG-GGVIPVSAVLADKEVMLC-------- 218 (374)
Q Consensus 153 ~l~~l~~~~~i~li~Dea~~~~~~~g~~-~~~~~~----~~~~d~~s~sK~~~-~G~~~~G~~~~~~~~~~~-------- 218 (374)
+|+++|++||++||+||+|+++.+.+.. .....+ +....+.|+||.++ +|+ |+||+++++++++.
T Consensus 233 ~l~~l~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~-r~G~~~~~~~~~~~~~~~~~~~ 311 (449)
T 3qgu_A 233 ELVNFARKNGSILVYDAAYALYISNPDCPKTIYEIPGADEVAIETCSFSKYAGFTGV-RLGWTVVPKALKYANGEPVHAD 311 (449)
T ss_dssp HHHHHHHHHTCEEEEECTTGGGCCCTTSCSSGGGSTTGGGTEEEEEECSGGGTCTTC-CCEEEECCTTCBCTTSCBHHHH
T ss_pred HHHHHHHHCCcEEEEEcchHhhhcCCCCCCCHhhccCCCCcEEEEecchhhcCCccc-eeEEEecCHHHHhhhhhhHHHH
Confidence 9999999999999999999987665532 122222 12233569999998 899 99999998877652
Q ss_pred cCCCCCCCCCCCCHHHHHHHHHHHHHHhh---hcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCC
Q 017259 219 IQPGEHGSTFGGNPLASAVAIASLDVIRD---EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTAL 295 (374)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~aa~~al~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 295 (374)
+........++.+++++.++.++++.... +++.++++++.+++.+.|++. ++.......+.++|+.++ ..
T Consensus 312 ~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-----g~~~~~~~~~~~~~~~~~-~~- 384 (449)
T 3qgu_A 312 WNRVMTTCFNGASNIVQAGGLACLQPEGLKEMNAMIKFYKENAQILKTTFTEM-----GFSVYGGDDAPYIWVGFP-GK- 384 (449)
T ss_dssp HHHHHHHSCCCCCHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----TCCEEESSSSSEEEEECT-TS-
T ss_pred HHHHhhcccCCCCHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHC-----CCeeeCCCCeeEEEEECC-CC-
Confidence 22112233447799999998888765211 245666677777777777654 222212224778888877 32
Q ss_pred chhHHHHHHHHHHC-CeEeccC------CCCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 017259 296 PVSAYDICLKMKER-GILAKPT------HDTIVRLTPPLSISSNELQEGSKALHDVLE 346 (374)
Q Consensus 296 ~~~~~~~~~~l~~~-Gi~v~~~------~~~~lRi~~~~~~~~e~i~~~~~~l~~~~~ 346 (374)
+..++++.|+++ ||.+.++ +.+++||+ +..+++++++++++|+++++
T Consensus 385 --~~~~~~~~l~~~~gI~v~pg~~f~~~~~~~iRis--~~~~~e~i~~~l~~l~~~~~ 438 (449)
T 3qgu_A 385 --PSWDVFAEILERCNIVTTPGSGYGPAGEGFVRAS--AFGSRENILEAVRRFKEAYG 438 (449)
T ss_dssp --CHHHHHHHHHHHHCEECEEGGGGCGGGTTEEEEE--CCSCHHHHHHHHHHHHHHHC
T ss_pred --CHHHHHHHHHHHCCEEEecchHhCCCCCCeEEEE--ecCCHHHHHHHHHHHHHHHH
Confidence 678899999876 9999875 25899999 55699999999999999987
No 97
>2gb3_A Aspartate aminotransferase; TM1698, structural genomics, PSI structure initiative, joint center for structural genomics; HET: LLP; 2.50A {Thermotoga maritima} SCOP: c.67.1.1
Probab=99.96 E-value=2e-29 Score=238.17 Aligned_cols=286 Identities=14% Similarity=0.162 Sum_probs=204.7
Q ss_pred HHHHHHHHhccc--------CCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccCCc
Q 017259 23 FPVFAERLTSMF--------GYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDN 94 (374)
Q Consensus 23 ~~~l~~~l~~~~--------~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~~~ 94 (374)
..++++.+++++ ..+++++|+||++|++.+++++ .++| |+|++.+|+|++....+...+..
T Consensus 81 ~~~l~~~la~~~~~~~g~~~~~~~v~~~~g~t~a~~~~~~~~-----~~~g-----d~Vl~~~~~~~~~~~~~~~~g~~- 149 (409)
T 2gb3_A 81 IWELREAFASYYKRRQRVDVKPENVLVTNGGSEAILFSFAVI-----ANPG-----DEILVLEPFYANYNAFAKIAGVK- 149 (409)
T ss_dssp CHHHHHHHHHHHHHTSCCCCCGGGEEEESHHHHHHHHHHHHH-----CCTT-----CEEEEEESCCTHHHHHHHHHTCE-
T ss_pred cHHHHHHHHHHHHHHhCCCCCHHHEEEeCCHHHHHHHHHHHh-----CCCC-----CEEEEcCCCchhHHHHHHHcCCE-
Confidence 455666655543 2368999999999999999988 4567 99999999998876554433321
Q ss_pred cccccCCCCCCCceeccCC-----C-HHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEe
Q 017259 95 EAIRGFGPLLPGHLKVDFG-----D-ITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIAD 168 (374)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~-----d-~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~D 168 (374)
+..++.+ + +++|+++++ ++++++++++++|++|.+. +.+.+++|.++|++||++||+|
T Consensus 150 ------------~~~v~~~~~~~~~~~~~l~~~l~---~~~~~v~~~~p~nptG~~~-~~~~l~~i~~~~~~~~~~li~D 213 (409)
T 2gb3_A 150 ------------LIPVTRRMEEGFAIPQNLESFIN---ERTKGIVLSNPCNPTGVVY-GKDEMRYLVEIAERHGLFLIVD 213 (409)
T ss_dssp ------------EEEEECCGGGTSCCCTTGGGGCC---TTEEEEEEESSCTTTCCCC-CHHHHHHHHHHHHHTTCEEEEE
T ss_pred ------------EEEeccCCCCCCccHHHHHHhhC---cCCeEEEECCCCCCCCCCc-CHHHHHHHHHHHHHcCCEEEEE
Confidence 1112211 1 566666665 4789999988888899876 7899999999999999999999
Q ss_pred ccccCCcccccCcccccCCC-CCcEE--Eeccccc-CCccchhhheeCH-HHHhhcCCCCCCCCCCCCHHHHHHHHHHHH
Q 017259 169 EIQSGLARSGRMLASDWEEV-RPDMV--ILGKALG-GGVIPVSAVLADK-EVMLCIQPGEHGSTFGGNPLASAVAIASLD 243 (374)
Q Consensus 169 ea~~~~~~~g~~~~~~~~~~-~~d~~--s~sK~~~-~G~~~~G~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~aa~~al~ 243 (374)
|+|+++.+.+..... ..+. ..+++ |+||.++ +|+ |+||+++++ ++.+.+.......+ +.+++++.++.++++
T Consensus 214 ea~~~~~~~~~~~~~-~~~~~~~~i~~~s~sK~~g~~G~-r~G~~~~~~~~l~~~l~~~~~~~~-~~~~~~~~a~~~~l~ 290 (409)
T 2gb3_A 214 EVYSEIVFRGEFASA-LSIESDKVVVIDSVSKKFSACGA-RVGCLITRNEELISHAMKLAQGRL-APPLLEQIGSVGLLN 290 (409)
T ss_dssp CTTTTCBCSSCCCCG-GGSCCTTEEEEEESTTTTTCGGG-CCEEEECSCHHHHHHHHHHHHHSC-CCCHHHHHHHHHHHT
T ss_pred CcccccccCCCCCCc-cccCCCCEEEEecchhccCCccc-eEEEEEECcHHHHHHHHHHHhccC-CCCHHHHHHHHHHHh
Confidence 999987655533232 1122 23544 8899998 788 999999988 88887765333334 778899988888885
Q ss_pred HHhh--hcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCchhHHHHHHHHHHC------CeEecc
Q 017259 244 VIRD--EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKER------GILAKP 315 (374)
Q Consensus 244 ~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~------Gi~v~~ 315 (374)
.... +++.++++++.+++.+.|++. .+ ... ..+..+.++|+.++. . +..++.+.|.++ ||.+.+
T Consensus 291 ~~~~~~~~~~~~~~~~~~~l~~~L~~~--g~-~~~-~~~~~~~~~~~~~~~-~---~~~~l~~~l~~~~~~~~~gi~v~~ 362 (409)
T 2gb3_A 291 LDDSFFDFVRETYRERVETVLKKLEEH--GL-KRF-TKPSGAFYITAELPV-E---DAEEFARWMLTDFNMDGETTMVAP 362 (409)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHT--TC-CCB-CCCSBSSEEEEECSS-S---CHHHHHHHHHHSCCBTTEEEECEE
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHc--Cc-eee-eCCCeeEEEEEEeCC-C---CHHHHHHHHHhccccccCcEEEeC
Confidence 3211 244566666677777766654 12 120 122345667767762 2 578899999987 999987
Q ss_pred C---------CCCEEEEecCCCCCHHHHHHHHHHHHHHHhccC
Q 017259 316 T---------HDTIVRLTPPLSISSNELQEGSKALHDVLELDL 349 (374)
Q Consensus 316 ~---------~~~~lRi~~~~~~~~e~i~~~~~~l~~~~~~~~ 349 (374)
+ ..+++|++++ .+++++++++++|+++++ ++
T Consensus 363 g~~f~~~~~~~~~~iRis~~--~~~e~i~~~~~~l~~~l~-~~ 402 (409)
T 2gb3_A 363 LRGFYLTPGLGKKEIRIACV--LEKDLLSRAIDVLMEGLK-MF 402 (409)
T ss_dssp GGGGCSSTTTTSSEEEEECC--SCHHHHHHHHHHHHHHHH-HH
T ss_pred chHhCCCCCCCCCEEEEEeC--CCHHHHHHHHHHHHHHHH-Hh
Confidence 4 2579999977 899999999999999998 65
No 98
>1bw0_A TAT, protein (tyrosine aminotransferase); tyrosine catabolism, pyridoxal-5'-phosphate, PLP; HET: LLP; 2.50A {Trypanosoma cruzi} SCOP: c.67.1.1
Probab=99.96 E-value=5.2e-29 Score=235.80 Aligned_cols=299 Identities=13% Similarity=0.109 Sum_probs=200.2
Q ss_pred cHHHHHHHHhcccC--------------CCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCccccc
Q 017259 22 KFPVFAERLTSMFG--------------YDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAA 87 (374)
Q Consensus 22 ~~~~l~~~l~~~~~--------------~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~ 87 (374)
...++++.++++++ .+++++++|+++|++.+++++ ..+| |+|++..|+|++....+
T Consensus 76 ~~~~lr~~la~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~al~~~~~~l-----~~~g-----d~vl~~~p~y~~~~~~~ 145 (416)
T 1bw0_A 76 GSPEAREAVATWWRNSFVHKEELKSTIVKDNVVLCSGGSHGILMAITAI-----CDAG-----DYALVPQPGFPHYETVC 145 (416)
T ss_dssp CCHHHHHHHHHHHHHHHCCSTTTGGGCCGGGEEEESHHHHHHHHHHHHH-----CCTT-----CEEEEEESCCTHHHHHH
T ss_pred CCHHHHHHHHHHHHhhhcccccCCCCCCcceEEEeCChHHHHHHHHHHh-----CCCC-----CEEEEcCCCcHhHHHHH
Confidence 45566666665544 568999999999999999988 5567 99999999999876554
Q ss_pred ccccCCccccccCCCCCCCceeccC-CCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEE
Q 017259 88 ISMSCDNEAIRGFGPLLPGHLKVDF-GDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMI 166 (374)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~-~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li 166 (374)
...+...... +...+ ..+ .|+++|+++++ ++++++++++++|++|.+. +++++++|.++|++||++||
T Consensus 146 ~~~g~~~~~v----~~~~~---~~~~~d~~~l~~~l~---~~~~~v~i~~p~nptG~~~-~~~~l~~i~~~~~~~~~~li 214 (416)
T 1bw0_A 146 KAYGIGMHFY----NCRPE---NDWEADLDEIRRLKD---DKTKLLIVTNPSNPCGSNF-SRKHVEDIVRLAEELRLPLF 214 (416)
T ss_dssp HHTTCEEEEE----EEEGG---GTTEECHHHHHHHCC---TTEEEEEEESSCTTTCCCC-CHHHHHHHHHHHHHHTCCEE
T ss_pred HHcCcEEEEe----ecCcc---cCCCCCHHHHHHHhc---cCCeEEEEeCCCCCCCccc-CHHHHHHHHHHHHHcCCEEE
Confidence 4333211110 00000 001 27899998886 4677888877888888776 79999999999999999999
Q ss_pred EeccccCCccccc----Cc-ccccCCCCCc---EEEeccccc-CCccchhhheeCHH--HHhhcCCC---CCCCCCCCCH
Q 017259 167 ADEIQSGLARSGR----ML-ASDWEEVRPD---MVILGKALG-GGVIPVSAVLADKE--VMLCIQPG---EHGSTFGGNP 232 (374)
Q Consensus 167 ~Dea~~~~~~~g~----~~-~~~~~~~~~d---~~s~sK~~~-~G~~~~G~~~~~~~--~~~~~~~~---~~~~~~~~~~ 232 (374)
+||+|+++.+.|. .+ ....+....+ +.|+||.++ +|+ |+||++++++ +++.+... ....+++.++
T Consensus 215 ~De~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~Gl-r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (416)
T 1bw0_A 215 SDEIYAGMVFKGKDPNATFTSVADFETTVPRVILGGTAKNLVVPGW-RLGWLLYVDPHGNGPSFLEGLKRVGMLVCGPCT 293 (416)
T ss_dssp EECTTTTCBCCSSCTTCCCCCTTSSCCSCCEEEEEESTTTTSCGGG-CCEEEEEECTTCSCHHHHHHHHHHHHHHTCSCH
T ss_pred EEccccccccCCCCCCCCccCHHHccCCCcEEEEecchhhCCCCCc-eEEEEEeeCchhhHHHHHHHHHHHhccccCCCc
Confidence 9999998765554 21 2222222222 338899986 688 9999887653 33333210 0113567889
Q ss_pred HHHHHHHHHHHHHhh---hcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCC--chhHHHHHHHHH
Q 017259 233 LASAVAIASLDVIRD---EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTAL--PVSAYDICLKMK 307 (374)
Q Consensus 233 ~~~~aa~~al~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~--~~~~~~~~~~l~ 307 (374)
++++++.++++.... ++..++++++.+++.+.|++ +|++....+..+.++|+.++.... ..+..++++.|+
T Consensus 294 ~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~----~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 369 (416)
T 1bw0_A 294 VVQAALGEALLNTPQEHLDQIVAKIEESAMYLYNHIGE----CIGLAPTMPRGAMYLMSRIDLEKYRDIKTDVEFFEKLL 369 (416)
T ss_dssp HHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHHHHTT----STTEEECCCCBTTEEEEEECGGGBSSCCSHHHHHHHHH
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHh----CCCCcccCCCeeEEEEEeCCHHHcCCCCCHHHHHHHHH
Confidence 999999888874322 13344455555555554443 333222122346777877753100 015678999885
Q ss_pred -HCCeEeccCC----CCEEEEecCCCCCHHHHHHHHHHHHHHHhccC
Q 017259 308 -ERGILAKPTH----DTIVRLTPPLSISSNELQEGSKALHDVLELDL 349 (374)
Q Consensus 308 -~~Gi~v~~~~----~~~lRi~~~~~~~~e~i~~~~~~l~~~~~~~~ 349 (374)
++||.++++. ++++||++ ..+++++++++++|+++++ +.
T Consensus 370 ~~~gi~v~~g~~f~~~~~iRis~--~~~~e~l~~~l~~l~~~l~-~~ 413 (416)
T 1bw0_A 370 EEENVQVLPGTIFHAPGFTRLTT--TRPVEVYREAVERIKAFCQ-RH 413 (416)
T ss_dssp HHHCEECEEGGGGTCTTEEEEEC--CSCHHHHHHHHHHHHHHHH-HH
T ss_pred HHCCEEEecccccCCCCeEEEEe--cCCHHHHHHHHHHHHHHHH-Hh
Confidence 7899998853 58999996 4689999999999999987 54
No 99
>3if2_A Aminotransferase; YP_265399.1, structura genomics, joint center for structural genomics, JCSG, prote structure initiative, PSI-2; HET: PLP; 2.50A {Psychrobacter arcticus 273-4}
Probab=99.96 E-value=7.4e-29 Score=236.82 Aligned_cols=302 Identities=15% Similarity=0.176 Sum_probs=205.0
Q ss_pred CcHHHHHHHHhccc--------CCCeEEecCChHHHHHHHHHHHHHcccccccCCCCcc--------------EEEEe-c
Q 017259 21 DKFPVFAERLTSMF--------GYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEA--------------IIVSC-C 77 (374)
Q Consensus 21 ~~~~~l~~~l~~~~--------~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~--------------~vi~~-~ 77 (374)
....++++.+++++ ..+++++|+|+++|++.+++++ ..+| | +|++. .
T Consensus 83 ~g~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~t~al~~~~~~l-----~~~g-----d~~~~~~~~~~g~~~~vi~~~~ 152 (444)
T 3if2_A 83 QGDSAFIDALVGFFNRHYDWNLTSENIALTNGSQNAFFYLFNLF-----GGAF-----VNEHSQDKESKSVDKSILLPLT 152 (444)
T ss_dssp TCCHHHHHHHHHHHHHHHCCCCCGGGEEEESSHHHHHHHHHHHS-----SEEE-----ECC-------CEEEEEEEESSS
T ss_pred CCCHHHHHHHHHHHHhhcCCCCCHHHEEEecCcHHHHHHHHHHH-----hCCC-----ccccccccccccccceEEEeCC
Confidence 33556666666654 4579999999999999999988 4555 4 67765 8
Q ss_pred cCCCCcccccccccCCccccccCCCCCCCceecc----------CCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCC
Q 017259 78 GCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVD----------FGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPP 147 (374)
Q Consensus 78 ~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~ 147 (374)
|+|+++............ ....+..++ .-|+++|++++++..++++++++++++|++|.+. +
T Consensus 153 p~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~g~~~~~~d~~~l~~~l~~~~~~~~~v~i~~p~nptG~~~-~ 224 (444)
T 3if2_A 153 PEYIGYSDVHVEGQHFAA-------VLPHIDEVTHDGEEGFFKYRVDFEALENLPALKEGRIGAICCSRPTNPTGNVL-T 224 (444)
T ss_dssp SCCGGGTTCCSSSCCEEE-------CCCEEEEEEETTEEEEEEEECCHHHHHTCHHHHTTCEEEEEEESSCTTTCCCC-C
T ss_pred CCccchhhcccccchhhc-------cCceEEecccccccCccccCCCHHHHHHHHHhcCCCceEEEeCCCCCCCCCcC-C
Confidence 999887654321100000 001111111 1279999988543236799999988889999877 7
Q ss_pred hhHHHHHHHHHHhcCCEEEEeccccCCcccccCcc---cccCCCCCcEEEecccccCCccchhhheeCHHHHhhcCCCCC
Q 017259 148 DGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLA---SDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEH 224 (374)
Q Consensus 148 ~~~l~~l~~l~~~~~i~li~Dea~~~~~~~g~~~~---~~~~~~~~d~~s~sK~~~~G~~~~G~~~~~~~~~~~~~~~~~ 224 (374)
.+.+++|.++|++||++||+||+|+.+. .+..+. ....+....+.|+||...+|+ |+||+++++++.+.+.....
T Consensus 225 ~~~l~~i~~~a~~~~~~li~De~~~~~~-~~~~~~~~~~~~~~~~i~~~S~sK~~~~G~-r~G~~~~~~~l~~~~~~~~~ 302 (444)
T 3if2_A 225 DEEMAHLAEIAKRYDIPLIIDNAYGMPF-PNIIYSDAHLNWDNNTILCFSLSKIGLPGM-RTGIIVADAKVIEAVSAMNA 302 (444)
T ss_dssp HHHHHHHHHHHHHTTCCEEEECTTCTTT-TCCBCSCCCCCCCTTEEEEEESTTTTCGGG-CCEEEECCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCEEEEECCCCCcc-cccccccccccCCCCEEEEechhhccCCCC-ceEEEEECHHHHHHHHHHHH
Confidence 8899999999999999999999998431 111100 011222334569999866788 99999999999888876545
Q ss_pred CCCCCCCHHHHHHHHHHHHHHhhh-----cHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEecc-CCCchh
Q 017259 225 GSTFGGNPLASAVAIASLDVIRDE-----KLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDK-TALPVS 298 (374)
Q Consensus 225 ~~~~~~~~~~~~aa~~al~~~~~~-----~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~ 298 (374)
..+++.+++++.++.+.++..... ...++++++.+.+.+.|.+....+ ++....+..+.++|+.++. .. +
T Consensus 303 ~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~~~~~~g~~~~~~~~~~~~---~ 378 (444)
T 3if2_A 303 VVNLAPTRFGAAIATPLVANDRIKQLSDNEIKPFYQKQATLAVKLLKQALGDY-PLMIHKPEGAIFLWLWFKDLPI---S 378 (444)
T ss_dssp HHHSSCCCHHHHHHHHHHHTSHHHHHHHHTHHHHHHHHHHHHHHHHHHHSSSS-SEEEECCCBSSEEEEEETTCSS---C
T ss_pred hccCCCChHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHhcccC-CceEecCCccEEEEEEcCCCCC---C
Confidence 556777888888888777642211 134445555555555555432111 1122223457788888875 33 6
Q ss_pred HHHHHHHHHHCCeEeccCC--------------CCEEEEecCCCCCHHHHHHHHHHHHHHHhccC
Q 017259 299 AYDICLKMKERGILAKPTH--------------DTIVRLTPPLSISSNELQEGSKALHDVLELDL 349 (374)
Q Consensus 299 ~~~~~~~l~~~Gi~v~~~~--------------~~~lRi~~~~~~~~e~i~~~~~~l~~~~~~~~ 349 (374)
..++.+.|.++||.++++. .+++||+++. +++++++++++|+++++ ++
T Consensus 379 ~~~l~~~l~~~gi~v~~g~~~~~~~~~~~~~~~~~~iRis~~~--~~e~i~~~l~~l~~~~~-~~ 440 (444)
T 3if2_A 379 TLDLYERLKAKGTLIVPSEYFFPGVDVSDYQHAHECIRMSIAA--DEQTLIDGIKVIGEVVR-EL 440 (444)
T ss_dssp HHHHHHHHHHTTEECEEGGGSCTTCCCTTCSGGGSEEEEESSS--CHHHHHHHHHHHHHHHH-HH
T ss_pred HHHHHHHHHHCCeEEecchhhcCCCCCcccccCCCeEEEEEeC--CHHHHHHHHHHHHHHHH-HH
Confidence 7889999999999998742 1589999775 99999999999999987 55
No 100
>1lc5_A COBD, L-threonine-O-3-phosphate decarboxylase; PLP-dependent decarboxylase cobalamin, lyase; 1.46A {Salmonella enterica} SCOP: c.67.1.1 PDB: 1lc7_A* 1lc8_A* 1lkc_A*
Probab=99.96 E-value=1.1e-28 Score=229.53 Aligned_cols=292 Identities=15% Similarity=0.154 Sum_probs=198.4
Q ss_pred CCCCcHHHHHHHHhcccCC--CeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccCCcc
Q 017259 18 FYNDKFPVFAERLTSMFGY--DMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNE 95 (374)
Q Consensus 18 ~~~~~~~~l~~~l~~~~~~--~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~ 95 (374)
|+.+...++++.++++++. +++++++|++++++.+++++ +| |+|++..|+||+....+...+....
T Consensus 56 y~~~~~~~l~~~la~~~~~~~~~v~~~~g~~~al~~~~~~~-------~g-----d~vl~~~p~y~~~~~~~~~~g~~~~ 123 (364)
T 1lc5_A 56 YPDADYFHLHQALARHHQVPASWILAGNGETESIFTVASGL-------KP-----RRAMIVTPGFAEYGRALAQSGCEIR 123 (364)
T ss_dssp CCCTTCHHHHHHHHHHHTSCGGGEEEESSHHHHHHHHHHHH-------CC-----SEEEEEESCCTHHHHHHHHTTCEEE
T ss_pred CCCCCHHHHHHHHHHHHCcCHHHEEECCCHHHHHHHHHHHc-------CC-----CeEEEeCCCcHHHHHHHHHcCCeEE
Confidence 3445678899999998865 58999999999999999877 24 8999999999987665544332211
Q ss_pred ccccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEeccccCCc
Q 017259 96 AIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLA 175 (374)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~~~~ 175 (374)
.. +.... . .++.++++.+.+ .+++++++++.++|++|.+. +.+++++|.++|++||+++|+||+|+++.
T Consensus 124 ~v----~~~~~-~--~~~~l~~~~~~~---~~~~~~v~i~~p~nptG~~~-~~~~l~~i~~~~~~~~~~li~De~~~~~~ 192 (364)
T 1lc5_A 124 RW----SLREA-D--GWQLTDAILEAL---TPDLDCLFLCTPNNPTGLLP-ERPLLQAIADRCKSLNINLILDEAFIDFI 192 (364)
T ss_dssp EE----ECCGG-G--TTCCCTTHHHHC---CTTCCEEEEESSCTTTCCCC-CHHHHHHHHHHHHHHTCEEEEECTTGGGS
T ss_pred EE----eCCcc-c--ccchhHHHHHhc---cCCCCEEEEeCCCCCCCCCC-CHHHHHHHHHHhhhcCcEEEEECcChhhc
Confidence 11 10000 0 000023233333 24677788777788888776 79999999999999999999999999775
Q ss_pred ccccCccccc---CCCCCcEEEeccccc-CCccchhhhe-eCHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHhhhcH
Q 017259 176 RSGRMLASDW---EEVRPDMVILGKALG-GGVIPVSAVL-ADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRDEKL 250 (374)
Q Consensus 176 ~~g~~~~~~~---~~~~~d~~s~sK~~~-~G~~~~G~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~al~~~~~~~~ 250 (374)
+.+... ... .+....+.|+||.++ +|+ |+||++ +++++.+.+... ..+++.+++++.++.++++. .++
T Consensus 193 ~~~~~~-~~~~~~~~~~i~~~s~sK~~~~~G~-r~G~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~~~~l~~---~~~ 265 (364)
T 1lc5_A 193 PHETGF-IPALKDNPHIWVLRSLTKFYAIPGL-RLGYLVNSDDAAMARMRRQ--QMPWSVNALAALAGEVALQD---SAW 265 (364)
T ss_dssp TTCCCS-GGGCTTCTTEEEEEESTTTTTCTTT-CCEEEECCCHHHHHHHHHH--SCTTCSCHHHHHHHHHGGGC---HHH
T ss_pred cCccch-hhHhccCCCEEEEEECchhhcCCcc-ceEEEEECCHHHHHHHHHh--CCCCCCCHHHHHHHHHHHhC---cHH
Confidence 433221 222 222223458999998 798 999999 899988877643 23677899999988887764 223
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCchhHHHHHHHHHHCCeEeccCC------CCEEEEe
Q 017259 251 AERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTH------DTIVRLT 324 (374)
Q Consensus 251 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~------~~~lRi~ 324 (374)
.++.++.....++.+.+....+|+ +...++.+.++++.++. ...++.+.|.++||.++++. .+++||+
T Consensus 266 ~~~~~~~~~~~~~~l~~~L~~~~~-~~~~~~~g~~~~~~~~~-----~~~~l~~~l~~~gi~v~~g~~~~~~~~~~iRis 339 (364)
T 1lc5_A 266 QQATWHWLREEGARFYQALCQLPL-LTVYPGRANYLLLRCER-----EDIDLQRRLLTQRILIRSCANYPGLDSRYYRVA 339 (364)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSTT-EEECCCSSSEEEEEESC-----TTCCHHHHHHTTTEECEECTTSTTCCTTEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCC-CEECCCCCeEEEEECCC-----cHHHHHHHHHHCCcEEeeCcccCCCCCCEEEEE
Confidence 334333333334444333333333 22234567788887764 24578899999999998753 5799999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHhccC
Q 017259 325 PPLSISSNELQEGSKALHDVLELDL 349 (374)
Q Consensus 325 ~~~~~~~e~i~~~~~~l~~~~~~~~ 349 (374)
+ .+.+++++++++|+++++ .+
T Consensus 340 ~---~~~~~~~~l~~~l~~~~~-~~ 360 (364)
T 1lc5_A 340 I---RSAAQNERLLAALRNVLT-GI 360 (364)
T ss_dssp C---CCHHHHHHHHHHHHHHC----
T ss_pred e---CCHHHHHHHHHHHHHHhh-cc
Confidence 3 368899999999998887 54
No 101
>3ez1_A Aminotransferase MOCR family; YP_604413.1, struct genomics, joint center for structural genomics, JCSG; 2.60A {Deinococcus geothermalis dsm 11300}
Probab=99.96 E-value=4.2e-29 Score=237.05 Aligned_cols=307 Identities=13% Similarity=0.108 Sum_probs=213.2
Q ss_pred CCcHHHHHHHHhcccCC--CeEEecCChHHHHH--HHHHHHHH--cc----cccccCCCCccEEEEeccCCCCccccccc
Q 017259 20 NDKFPVFAERLTSMFGY--DMVLPMNTGAEGVE--TALKLARK--WG----YVKKKFSIDEAIIVSCCGCFHGRTLAAIS 89 (374)
Q Consensus 20 ~~~~~~l~~~l~~~~~~--~~~~~~~~gs~a~~--~al~~~~~--~~----~~~~G~~~~~~~vi~~~~~yhg~~~~~~~ 89 (374)
.+...++++.++++++. +++++|+|+++++. .+++++.. .+ +.+.| |+|++..|+|+++......
T Consensus 69 ~~g~~~lr~~ia~~~~~~~~~i~~t~G~~~al~~~~~~~~l~~~~~g~~~~~~~~g-----d~Vlv~~p~y~~~~~~~~~ 143 (423)
T 3ez1_A 69 VAGLPSARALFAGYLDVKAENVLVWNNSSLELQGLVLTFALLHGVRGSTGPWLSQT-----PKMIVTVPGYDRHFLLLQT 143 (423)
T ss_dssp TTCCHHHHHHHHHHTTSCGGGEEECSSCHHHHHHHHHHHHHHTCCTTCSSCGGGGC-----CEEEEEESCCHHHHHHHHH
T ss_pred CCChHHHHHHHHHHhCCChhhEEEeCCcHHHHHHHHHHHHHhccCCCccccccCCC-----CEEEEcCCCcHHHHHHHHH
Confidence 45578899999998854 58999999999997 88887752 10 00004 8999999999887665554
Q ss_pred ccCCccccccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEcc-ccCCCCcccCChhHHHHHHHHH-HhcCCEEEE
Q 017259 90 MSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEP-IQGEAGVIIPPDGYLKAVRDLC-SKYNILMIA 167 (374)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~-~~~~~g~~~~~~~~l~~l~~l~-~~~~i~li~ 167 (374)
.+...... +...+ . .|+++|++++++. +++++++++| ++|++|.+. +.+.+++|.++| ++||++||+
T Consensus 144 ~g~~~~~v----~~~~~-g----~d~~~l~~~l~~~-~~~~~v~~~~~~~NPtG~~~-~~~~l~~l~~~a~~~~~~~li~ 212 (423)
T 3ez1_A 144 LGFELLTV----DMQSD-G----PDVDAVERLAGTD-PSVKGILFVPTYSNPGGETI-SLEKARRLAGLQAAAPDFTIFA 212 (423)
T ss_dssp HTCEEEEE----EEETT-E----ECHHHHHHHHHSC-TTEEEEEECSSSCTTTCCCC-CHHHHHHHHTCCCSSTTCEEEE
T ss_pred cCCEEEec----cCCCC-C----CCHHHHHHHHhhC-CCceEEEECCCCCCCCCcCC-CHHHHHHHHHHHHhccCCEEEE
Confidence 43321111 00000 0 2799999999632 5788998775 677788777 788899999999 999999999
Q ss_pred eccccCCcccc---cCc-cc-------ccCCCCCcEEEecccccCCccchhhheeCHHHHhhcCCCCCCCCCCCCHHHHH
Q 017259 168 DEIQSGLARSG---RML-AS-------DWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASA 236 (374)
Q Consensus 168 Dea~~~~~~~g---~~~-~~-------~~~~~~~d~~s~sK~~~~G~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (374)
||+|+.+.+.+ ... .. +..+....+.||||.+.+|+ |+||+++++++.+.+.......+++.+.+++.
T Consensus 213 De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~~~G~-r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (423)
T 3ez1_A 213 DDAYRVHHLVEEDRAEPVNFVVLARDAGYPDRAFVFASTSKITFAGA-GLGFVASSEDNIRWLSKYLGAQSIGPNKVEQA 291 (423)
T ss_dssp ECTTSSCBCCSSSCCCCCCHHHHHHHHTCTTSEEEEEESTTTSCSSS-SCEEEEECHHHHHHHHHHHHHSCSCCCHHHHH
T ss_pred ECCcchhhcCCCCCCCCcchhhhhhccCCCCeEEEEeCchhhccCCc-ceEEEEeCHHHHHHHHHHHhhhccCCCHHHHH
Confidence 99998532222 110 11 11122233559999977899 99999999999888876555667888999999
Q ss_pred HHHHHHHH-Hh-hh----cHHHHHHHHHHHHHHHHHHHHHhCC-CceeeEEEEeeeEEEEeccCCCchhHHHHHHHHHHC
Q 017259 237 VAIASLDV-IR-DE----KLAERSAHLGEELRQHLFKIQQQFP-NYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKER 309 (374)
Q Consensus 237 aa~~al~~-~~-~~----~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~ 309 (374)
++.++++. .. -. +..+.++++.+.+.+.|.+....++ .+....+..+.++|+.++.. +..++.+.|.++
T Consensus 292 a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~p~~g~~~~~~~~~~----~~~~~~~~l~~~ 367 (423)
T 3ez1_A 292 RHVKFLTEYPGGLEGLMRDHAAIIAPKFRAVDEVLRAELGEGGEYATWTLPKGGYFISLDTAEP----VADRVVKLAEAA 367 (423)
T ss_dssp HHHHHHHHSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSSEEECCCSBSSCEEEEESSS----CHHHHHHHHHHT
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCCCceEEeCCCccEEEEEECCCC----cHHHHHHHHHHC
Confidence 88888875 11 11 2233444455555555544332221 01112234578889888764 577899999999
Q ss_pred CeEeccC----------CCCEEEEecCCCCCHHHHHHHHHHHHHHHhccC
Q 017259 310 GILAKPT----------HDTIVRLTPPLSISSNELQEGSKALHDVLELDL 349 (374)
Q Consensus 310 Gi~v~~~----------~~~~lRi~~~~~~~~e~i~~~~~~l~~~~~~~~ 349 (374)
||.++++ ..+++||+++.. +++++++++++|+++++ ++
T Consensus 368 gv~v~~~g~~~~~~~~~~~~~iRis~~~~-~~~~i~~~~~~l~~~l~-~~ 415 (423)
T 3ez1_A 368 GVSLTPAGATYPAGQDPHNRNLRLAPTRP-PVEEVRTAMQVVAACIR-LA 415 (423)
T ss_dssp TEECCCTTTTSSTTCCSSSCEEEECCSSS-CHHHHHHHHHHHHHHHH-HH
T ss_pred CcEEecCcccccCCCCCCCCeEEEEcCCC-CHHHHHHHHHHHHHHHH-HH
Confidence 9999882 258999998655 99999999999999987 54
No 102
>1elu_A L-cysteine/L-cystine C-S lyase; FES cluster biosynthesis, pyridoxal 5'-phosphate, thiocystei aminoacrylate, enzyme-product complex; HET: PDA; 1.55A {Synechocystis SP} SCOP: c.67.1.3 PDB: 1elq_A* 1n2t_A* 1n31_A*
Probab=99.96 E-value=9.2e-29 Score=231.82 Aligned_cols=282 Identities=14% Similarity=0.099 Sum_probs=205.7
Q ss_pred CcHHHHHHHHhcccCCC--eEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCccccccc---ccCCcc
Q 017259 21 DKFPVFAERLTSMFGYD--MVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAIS---MSCDNE 95 (374)
Q Consensus 21 ~~~~~l~~~l~~~~~~~--~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~---~~~~~~ 95 (374)
+...++++.+++++|.+ ++++++||++|++.+++.++ ..+| |+|++..++|++....... ..+..
T Consensus 59 ~~~~~l~~~la~~~g~~~~~v~~~~g~t~a~~~~~~~~~----~~~g-----d~vl~~~~~~~~~~~~~~~~~~~~g~~- 128 (390)
T 1elu_A 59 QLIAQLRQALAETFNVDPNTITITDNVTTGCDIVLWGLD----WHQG-----DEILLTDCEHPGIIAIVQAIAARFGIT- 128 (390)
T ss_dssp HHHHHHHHHHHHHTTSCGGGEEEESSHHHHHHHHHHHSC----CCTT-----CEEEEETTCCHHHHHHHHHHHHHHCCE-
T ss_pred HHHHHHHHHHHHHcCCCHHHEEEeCChHHHHHHHHhCCC----CCCC-----CEEEEecCcccHHHHHHHHHHHHhCcE-
Confidence 56788999999998765 89999999999999998873 3456 9999999999886543211 11111
Q ss_pred ccccCCCCCCCceeccC-------CCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHH----hcCCE
Q 017259 96 AIRGFGPLLPGHLKVDF-------GDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCS----KYNIL 164 (374)
Q Consensus 96 ~~~~~~~~~~~~~~~~~-------~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~----~~~i~ 164 (374)
+..++. .|+++++++++ ++++++++++++|++|.+.+ +++|.++|+ +||++
T Consensus 129 -----------~~~v~~~~~~~~~~d~~~l~~~i~---~~~~~v~~~~~~nptG~~~~----~~~i~~l~~~~~~~~~~~ 190 (390)
T 1elu_A 129 -----------YRFFPVAATLNQGDAAAVLANHLG---PKTRLVILSHLLWNTGQVLP----LAEIMAVCRRHQGNYPVR 190 (390)
T ss_dssp -----------EEEECCGGGSSSSCHHHHHHTTCC---TTEEEEEEESBCTTTCCBCC----HHHHHHHHHHCCSSSCCE
T ss_pred -----------EEEEcCCCCCCccchHHHHHHhcC---CCceEEEEeccccCCceecC----HHHHHHHHhhhhhhcCcE
Confidence 111111 26788887776 57999999999999999998 999999999 99999
Q ss_pred EEEeccccCCcccccCcccccCCCCCcEE--EecccccCCccchhhheeCHHHHhhcCCCCC------------------
Q 017259 165 MIADEIQSGLARSGRMLASDWEEVRPDMV--ILGKALGGGVIPVSAVLADKEVMLCIQPGEH------------------ 224 (374)
Q Consensus 165 li~Dea~~~~~~~g~~~~~~~~~~~~d~~--s~sK~~~~G~~~~G~~~~~~~~~~~~~~~~~------------------ 224 (374)
+|+||+|+ ++.. . .......+|++ |++|.+.+|. ++|++++++++.+.+.....
T Consensus 191 li~Dea~~-~g~~--~--~~~~~~~~d~~~~s~~K~~~~~~-g~G~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 264 (390)
T 1elu_A 191 VLVDGAQS-AGSL--P--LDFSRLEVDYYAFTGHKWFAGPA-GVGGLYIHGDCLGEINPTYVGWRSITYGAKGEPTGWAE 264 (390)
T ss_dssp EEEECTTT-BTTB--C--CCTTTSCCSEEEEESSSTTCCCT-TCEEEEECTTTGGGCCCCSCCTTTEEECTTSCEEEECS
T ss_pred EEEEcccc-cCCc--C--CChhhcCCCEEEccccccccCCC-ceEEEEECHHhHhhcCCccccCCcccccccCccccccc
Confidence 99999997 3222 1 11123345665 5889888888 89999999988888765321
Q ss_pred ----CCCCCCCHHHHHHHHHHHHHHhhhc----HHHHHHHHHHHHHHHHHHHHHhCCCceeeE--EEEeeeEEEEeccCC
Q 017259 225 ----GSTFGGNPLASAVAIASLDVIRDEK----LAERSAHLGEELRQHLFKIQQQFPNYVKEV--RGRGLFNAVEFDKTA 294 (374)
Q Consensus 225 ----~~~~~~~~~~~~aa~~al~~~~~~~----~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~--~~~g~~~~~~~~~~~ 294 (374)
....+.+.++++++.++++.+.+.+ +.++++++.+++.+.|+++ +++.... ++.+.++.+.++...
T Consensus 265 ~~~~~~~~~~~~~~~~a~~~al~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~----~g~~~~~~~~~~~~~~~~~~~~~~ 340 (390)
T 1elu_A 265 GGKRFEVATSAYPQYAGLLAALQLHQRQGTAEERYQAICQRSEFLWRGLNQL----PHVHCLATSAPQAGLVSFTVDSPL 340 (390)
T ss_dssp GGGGGCCSCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHS----TTEEESCSSCCSSSEEEEEECSSS
T ss_pred chHhhCCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhc----CCcEEecCccccccEEEEEcCCCC
Confidence 1223557777888888888765543 4556666666666666553 2221111 345778888775433
Q ss_pred CchhHHHHHHHHHHCCeEeccCC-CCEEEEecCCCCCHHHHHHHHHHHHH
Q 017259 295 LPVSAYDICLKMKERGILAKPTH-DTIVRLTPPLSISSNELQEGSKALHD 343 (374)
Q Consensus 295 ~~~~~~~~~~~l~~~Gi~v~~~~-~~~lRi~~~~~~~~e~i~~~~~~l~~ 343 (374)
+..++.+.|.++||.++++. .+++||+++...+++++++++++|++
T Consensus 341 ---~~~~~~~~l~~~gi~v~~~~~~~~iRis~~~~~~~~~i~~~~~~l~~ 387 (390)
T 1elu_A 341 ---GHRAIVQKLEEQRIYLRTIADPDCIRACCHYITDEEEINHLLARLAD 387 (390)
T ss_dssp ---CHHHHHHHHHHTTEECEEETTTTEEEEECCTTCCHHHHHHHHHHHTT
T ss_pred ---CHHHHHHHHHHCCEEEEecCCCCeEEEecccCCCHHHHHHHHHHHHh
Confidence 57889999999999999874 68999999888999999999998864
No 103
>3ppl_A Aspartate aminotransferase; dimer, PLP-dependent transferase-like fold structural genomics, joint center for structural genomics; HET: MSE PLP UNL; 1.25A {Corynebacterium glutamicum}
Probab=99.96 E-value=8.5e-29 Score=235.25 Aligned_cols=302 Identities=14% Similarity=0.088 Sum_probs=213.7
Q ss_pred CCcHHHHHHHHhcccCC--CeEEecCChHHHH--HHHHHHHHH--cc-----cccccCCCCccEEEEeccCCCCcccccc
Q 017259 20 NDKFPVFAERLTSMFGY--DMVLPMNTGAEGV--ETALKLARK--WG-----YVKKKFSIDEAIIVSCCGCFHGRTLAAI 88 (374)
Q Consensus 20 ~~~~~~l~~~l~~~~~~--~~~~~~~~gs~a~--~~al~~~~~--~~-----~~~~G~~~~~~~vi~~~~~yhg~~~~~~ 88 (374)
.....++++.++++++. +++++|+|+++++ +.+++++.. .+ ...+| |+|++.+|+|+++.....
T Consensus 77 ~~g~~~lr~~ia~~~~~~~~~i~~t~G~~~al~~~~~~~~l~~~~~g~~~~~~~~~g-----d~V~v~~p~y~~~~~~~~ 151 (427)
T 3ppl_A 77 LDGIVDIRQIWADLLGVPVEQVLAGDASSLNIMFDVISWSYIFGNNDSVQPWSKEET-----VKWICPVPGYDRHFSITE 151 (427)
T ss_dssp SSCCHHHHHHHHHHHTSCGGGEEECSSCHHHHHHHHHHHHHHHCCTTCSSCGGGSSC-----CEEEEEESCCHHHHHHHH
T ss_pred CCCcHHHHHHHHHHhCCCcceEEEeCCcHHHHHHHHHHHHHhccCCcccccccCCCC-----CEEEEcCCCcHHHHHHHH
Confidence 34678888999888754 6899999999999 578887753 10 00025 999999999988765555
Q ss_pred cccCCccccccCCCCCCCceeccC----CCHHHHHHHHHhcCCcEEEEEEcc-ccCCCCcccCChhHHHHHHHHH-HhcC
Q 017259 89 SMSCDNEAIRGFGPLLPGHLKVDF----GDITALEKIFKESGDQIAGFLFEP-IQGEAGVIIPPDGYLKAVRDLC-SKYN 162 (374)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~----~d~~~le~~l~~~~~~~~~vi~~~-~~~~~g~~~~~~~~l~~l~~l~-~~~~ 162 (374)
..+.. +..++. .|+++|+++++. +++++++++| ++|++|.+. +.+.+++|.++| ++||
T Consensus 152 ~~g~~-------------~~~v~~~~~g~d~~~l~~~l~~--~~~~~v~~~p~~~NPtG~~~-~~~~~~~l~~~a~~~~~ 215 (427)
T 3ppl_A 152 RFGFE-------------MISVPMNEDGPDMDAVEELVKN--PQVKGMWVVPVFSNPTGFTV-TEDVAKRLSAMETAAPD 215 (427)
T ss_dssp HTTCE-------------EEEEEEETTEECHHHHHHHTTS--TTEEEEEECCSSCTTTCCCC-CHHHHHHHHHCCCSSTT
T ss_pred HcCCE-------------EEEeCCCCCCCCHHHHHHHHhc--CCCeEEEECCCCCCCCCccC-CHHHHHHHHHHHhhcCC
Confidence 44322 111221 178999998842 4789998885 677788777 788899999999 9999
Q ss_pred CEEEEeccccCCcccccCc---cc-c------cCCCCCcEEEecccccCCccchhhheeCHHHHhhcCCCCCCCCCCCCH
Q 017259 163 ILMIADEIQSGLARSGRML---AS-D------WEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNP 232 (374)
Q Consensus 163 i~li~Dea~~~~~~~g~~~---~~-~------~~~~~~d~~s~sK~~~~G~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (374)
++||+||+|+++.+.+... .. . ..+....+.||||.+++|+ |+||+++++++.+.+.......+++.+.
T Consensus 216 ~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~G~-r~G~~~~~~~l~~~~~~~~~~~~~~~~~ 294 (427)
T 3ppl_A 216 FRVVWDNAYAVHTLTDEFPEVIDIVGLGEAAGNPNRFWAFTSTSKITLAGA-GVSFFLTSAENRKWYTGHAGIRGIGPNK 294 (427)
T ss_dssp CEEEEECTTTTCBSSSCCCCCCCHHHHHHHTTCTTSEEEEEESTTTSCTTS-SCEEEECCHHHHHHHHHHHHHHCSCCCH
T ss_pred CEEEEECCCcccccCCCCCCccchhhhhhccCCCCcEEEEechhhccCcCc-cEEEEEcCHHHHHHHHHHhhcccCCCCH
Confidence 9999999999853333211 11 1 1223334569999977899 9999999999888887654555678899
Q ss_pred HHHHHHHHHHHHHh---h--hcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCchhHHHHHHHHH
Q 017259 233 LASAVAIASLDVIR---D--EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMK 307 (374)
Q Consensus 233 ~~~~aa~~al~~~~---~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~ 307 (374)
+.+.++.++++... . ....+.++++.+.+.+.|++....++......+..|.++|+.++.. +..++.+.|.
T Consensus 295 ~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~l~~~~~~~~~~p~~g~~~~~~~~~~----~~~~~~~~l~ 370 (427)
T 3ppl_A 295 VNQLAHARYFGDAEGVRAVMRKHAASLAPKFNKVLEILDSRLAEYGVAQWTVPAGGYFISLDVVPG----TASRVAELAK 370 (427)
T ss_dssp HHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTCCEECCCSBSSCEEEECSTT----CHHHHHHHHH
T ss_pred HHHHHHHHHHhChhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEeCCCccEEEEEECCcc----hHHHHHHHHH
Confidence 99988887776411 1 1334455555666666665543322112222334578888888754 5788999999
Q ss_pred HCCeEeccC----------CCCEEEEecCCCCCHHHHHHHHHHHHHHHhccC
Q 017259 308 ERGILAKPT----------HDTIVRLTPPLSISSNELQEGSKALHDVLELDL 349 (374)
Q Consensus 308 ~~Gi~v~~~----------~~~~lRi~~~~~~~~e~i~~~~~~l~~~~~~~~ 349 (374)
++||.++++ ..+++||+++.. +++++++++++|+++++ ++
T Consensus 371 ~~gv~v~~~g~~~~~~~~~~~~~~Ris~~~~-~~~~i~~~~~~l~~~l~-~~ 420 (427)
T 3ppl_A 371 EAGIALTGAGSSYPLRQDPENKNLRLAPSLP-PVEELEVAMDGVATCVL-LA 420 (427)
T ss_dssp HTTEECCCTTTTSGGGCCTTSCEEEECCSSS-CHHHHHHHHHHHHHHHH-HH
T ss_pred HCCCEEecCcCcCCCCCCCCCCeEEEECCCC-CHHHHHHHHHHHHHHHH-HH
Confidence 999999882 368999998654 89999999999999987 54
No 104
>1kmj_A Selenocysteine lyase; persulfide perselenide NIFS pyridoxal phosphate, structural PSI, protein structure initiative; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.3 PDB: 1i29_A* 1jf9_A* 1kmk_A* 1c0n_A*
Probab=99.96 E-value=2.7e-28 Score=229.75 Aligned_cols=296 Identities=16% Similarity=0.172 Sum_probs=204.9
Q ss_pred CCcHHHHHHHHhcccCC---CeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccCCccc
Q 017259 20 NDKFPVFAERLTSMFGY---DMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEA 96 (374)
Q Consensus 20 ~~~~~~l~~~l~~~~~~---~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~ 96 (374)
.+...++++.++++++. +++++++|+++|++.++++++.+. ..+| |+|++.+++||+.......+....+.
T Consensus 66 ~~~~~~l~~~la~~~~~~~~~~v~~~~g~t~a~~~~~~~~~~~~-~~~g-----d~vl~~~~~~~~~~~~~~~~~~~~g~ 139 (406)
T 1kmj_A 66 TEKMENVRKRASLFINARSAEELVFVRGTTEGINLVANSWGNSN-VRAG-----DNIIISQMEHHANIVPWQMLCARVGA 139 (406)
T ss_dssp HHHHHHHHHHHHHHTTCSCGGGEEEESSHHHHHHHHHHHTHHHH-CCTT-----CEEEEETTCCGGGTHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHcCCCCCCeEEEeCChhHHHHHHHHHhhhhc-CCCC-----CEEEEecccchHHHHHHHHHHHhCCC
Confidence 45678899999999876 689999999999999999884221 3456 99999999998865432111100011
Q ss_pred cccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEeccccCCcc
Q 017259 97 IRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLAR 176 (374)
Q Consensus 97 ~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~~~~~ 176 (374)
...+.+...+. ..|+++++++++ ++++++++++++|++|.+.+ +++|.++|++||+++|+||+|+.. .
T Consensus 140 ~~~~~~~~~~~----~~d~~~l~~~l~---~~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~D~~~~~g-~ 207 (406)
T 1kmj_A 140 ELRVIPLNPDG----TLQLETLPTLFD---EKTRLLAITHVSNVLGTENP----LAEMITLAHQHGAKVLVDGAQAVM-H 207 (406)
T ss_dssp EEEEECBCTTS----CBCGGGHHHHCC---TTEEEEEEESBCTTTCCBCC----HHHHHHHHHHTTCEEEEECTTTTT-T
T ss_pred EEEEEecCCCC----CcCHHHHHHHhc---cCCeEEEEeCCCccccCcCC----HHHHHHHHHHcCCEEEEEchhhcC-C
Confidence 10011111111 127889998886 57899999999999999998 999999999999999999999842 1
Q ss_pred cccCcccccCCCCCcEE--EecccccCCccchhhheeCHHHHhhcCCCCCCC---------------------CCCCCHH
Q 017259 177 SGRMLASDWEEVRPDMV--ILGKALGGGVIPVSAVLADKEVMLCIQPGEHGS---------------------TFGGNPL 233 (374)
Q Consensus 177 ~g~~~~~~~~~~~~d~~--s~sK~~~~G~~~~G~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~ 233 (374)
. .+... ...+|++ |+||.++ +. ++|++++++++.+.+.+...+. ..+.+.+
T Consensus 208 ~--~~~~~--~~~~d~~~~s~~K~~g-~~-G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (406)
T 1kmj_A 208 H--PVDVQ--ALDCDFYVFSGHKLYG-PT-GIGILYVKEALLQEMPPWEGGGSMIATVSLSEGTTWTKAPWRFEAGTPNT 281 (406)
T ss_dssp S--CCCHH--HHTCSEEEEEGGGTTS-CT-TCEEEEECHHHHHHCCCSSCSTTSEEEEETTTEEEECCTTGGGCCSSCCH
T ss_pred C--CCccc--ccCCCEEEEEchhccC-CC-CcEEEEEeHHHHhhcCCcccCCCceeecccccccccCCCchhccCCCCCH
Confidence 1 11111 2245654 7889884 33 4689999999988887543221 1233555
Q ss_pred HHHHHH-HHHHHHhhh---cHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEE--EeeeEEEEeccCCCchhHHHHHHHHH
Q 017259 234 ASAVAI-ASLDVIRDE---KLAERSAHLGEELRQHLFKIQQQFPNYVKEVRG--RGLFNAVEFDKTALPVSAYDICLKMK 307 (374)
Q Consensus 234 ~~~aa~-~al~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~--~g~~~~~~~~~~~~~~~~~~~~~~l~ 307 (374)
.+.++. ++++.+.+. ++.++++++.+++.+.|+++ |++ ....+ .+.++.+.++.. +..++.+.|.
T Consensus 282 ~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~----~~~-~~~~~~~~~~~~~~~~~~~----~~~~~~~~l~ 352 (406)
T 1kmj_A 282 GGIIGLGAALEYVSALGLNNIAEYEQNLMHYALSQLESV----PDL-TLYGPQNRLGVIAFNLGKH----HAYDVGSFLD 352 (406)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTS----TTE-EEESCTTCCSEEEEEETTC----CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHhcC----CCe-EEecCCCcCCEEEEEECCC----CHHHHHHHHh
Confidence 555555 677776542 45556666666666665543 222 22223 567777777532 5778999999
Q ss_pred HCCeEeccCC------------CCEEEEecCCCCCHHHHHHHHHHHHHHHhccC
Q 017259 308 ERGILAKPTH------------DTIVRLTPPLSISSNELQEGSKALHDVLELDL 349 (374)
Q Consensus 308 ~~Gi~v~~~~------------~~~lRi~~~~~~~~e~i~~~~~~l~~~~~~~~ 349 (374)
++||.++++. .+++||+++..++++|+++++++|+++++ .+
T Consensus 353 ~~gi~v~~g~~~~~~~~~~~g~~~~iRis~~~~~t~~~i~~~~~~l~~~~~-~l 405 (406)
T 1kmj_A 353 NYGIAVRTGHHCAMPLMAYYNVPAMCRASLAMYNTHEEVDRLVTGLQRIHR-LL 405 (406)
T ss_dssp HTTEECEEECTTCHHHHHHTTCSCEEEEECCTTCCHHHHHHHHHHHHHHHH-HH
T ss_pred hCCcEEEeccccchHHHHhcCCCCeEEEEeecCCCHHHHHHHHHHHHHHHH-hh
Confidence 9999998643 48999999988899999999999999987 53
No 105
>3f9t_A TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L-tyrosine decarboxylase MFNA (EC 4.1.1.25), ST genomics; HET: PLP; 2.11A {Methanocaldococcus jannaschii}
Probab=99.96 E-value=3.1e-28 Score=228.47 Aligned_cols=290 Identities=14% Similarity=0.082 Sum_probs=200.4
Q ss_pred CCcHHHHHHHHhcccCC--CeEEecCChHHHHHHHHHHHHHcc--------cccccCCCCccEEEEeccCCCCccccccc
Q 017259 20 NDKFPVFAERLTSMFGY--DMVLPMNTGAEGVETALKLARKWG--------YVKKKFSIDEAIIVSCCGCFHGRTLAAIS 89 (374)
Q Consensus 20 ~~~~~~l~~~l~~~~~~--~~~~~~~~gs~a~~~al~~~~~~~--------~~~~G~~~~~~~vi~~~~~yhg~~~~~~~ 89 (374)
.+..++++++++++++. +++++++||++|++.++++++.+. ...+| |+|++..++|++....+..
T Consensus 68 ~~~~~~l~~~la~~~~~~~~~i~~~~ggt~a~~~~~~~~~~~~~~~~~~~~~~~~g-----d~vl~~~~~~~~~~~~~~~ 142 (397)
T 3f9t_A 68 KLLEEKAVALLGSLLNNKDAYGHIVSGGTEANLMALRCIKNIWREKRRKGLSKNEH-----PKIIVPITAHFSFEKGREM 142 (397)
T ss_dssp HHHHHHHHHHHHHHTTCTTCEEEEESCHHHHHHHHHHHHHHHHHHHHHTTCCCCSS-----CEEEEETTCCTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCCCEEEecCcHHHHHHHHHHHHHHHHhhhhhcccCCCC-----eEEEECCcchhHHHHHHHH
Confidence 44556788899988854 478999999999999999996541 01135 9999999999876555444
Q ss_pred ccCCccccccCCCCCCCceeccCC-----CHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCE
Q 017259 90 MSCDNEAIRGFGPLLPGHLKVDFG-----DITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNIL 164 (374)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~-----d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~ 164 (374)
.+. .+..++.+ |+++|+++++++ +++++++++++|++|.+.+ +++|.++|++||++
T Consensus 143 ~g~-------------~~~~v~~~~~~~~d~~~l~~~i~~~--~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~ 203 (397)
T 3f9t_A 143 MDL-------------EYIYAPIKEDYTIDEKFVKDAVEDY--DVDGIIGIAGTTELGTIDN----IEELSKIAKENNIY 203 (397)
T ss_dssp HTC-------------EEEEECBCTTSSBCHHHHHHHHHHS--CCCEEEEEBSCTTTCCBCC----HHHHHHHHHHHTCE
T ss_pred cCc-------------eeEEEeeCCCCcCCHHHHHHHHhhc--CCeEEEEECCCCCCCCCCC----HHHHHHHHHHhCCe
Confidence 332 12222222 899999999853 6788888888999999987 99999999999999
Q ss_pred EEEeccccCCc--cccc---------CcccccCCCCCcEEEecccccCCccchhhheeCH-HHHhhcCC---CCC-----
Q 017259 165 MIADEIQSGLA--RSGR---------MLASDWEEVRPDMVILGKALGGGVIPVSAVLADK-EVMLCIQP---GEH----- 224 (374)
Q Consensus 165 li~Dea~~~~~--~~g~---------~~~~~~~~~~~d~~s~sK~~~~G~~~~G~~~~~~-~~~~~~~~---~~~----- 224 (374)
||+||+|+++. ..+. .+.... +.+..+.+++|.+++|. ++|+++.++ .+.+.+.. ...
T Consensus 204 li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~K~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (397)
T 3f9t_A 204 IHVDAAFGGLVIPFLDDKYKKKGVNYKFDFSL-GVDSITIDPHKMGHCPI-PSGGILFKDIGYKRYLDVDAPYLTETRQA 281 (397)
T ss_dssp EEEECTTGGGTGGGCCGGGCCTTCCCCCSGGG-TCSEEECCTTTTTCCCS-SCEEEEESSGGGGGGTCEECTTSSSSEEC
T ss_pred EEEEccccchhhhhcccccccccccccccccc-cCCeEEEccccccCCCC-CceEEEEeCHHHHHhhccCCccccCCCcc
Confidence 99999998642 2222 222222 33333446779888888 999987754 44444421 111
Q ss_pred ---CCCCCCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCchhHHH
Q 017259 225 ---GSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYD 301 (374)
Q Consensus 225 ---~~~~~~~~~~~~aa~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 301 (374)
+.....+.+++.++.+.+.....++..++.+++.+++.+.|++. .+ ..+. .+.+.++++.++ ...+
T Consensus 282 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~--g~-~~~~--~~~~~~~~~~~~------~~~~ 350 (397)
T 3f9t_A 282 TILGTRVGFGGACTYAVLRYLGREGQRKIVNECMENTLYLYKKLKEN--NF-KPVI--EPILNIVAIEDE------DYKE 350 (397)
T ss_dssp SSCSSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT--TC-CBSS--CCSSSEEEEECT------THHH
T ss_pred ccccccccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHC--CC-EEEc--CCCccEEEEEeC------CHHH
Confidence 11112244444455544433222356777777888888888776 22 1222 245667776554 3678
Q ss_pred HHHHHHHCCeEeccCC-CCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 017259 302 ICLKMKERGILAKPTH-DTIVRLTPPLSISSNELQEGSKALHDVLE 346 (374)
Q Consensus 302 ~~~~l~~~Gi~v~~~~-~~~lRi~~~~~~~~e~i~~~~~~l~~~~~ 346 (374)
+.+.|.++||.++++. ++++||+++..++++++++++++|+++++
T Consensus 351 ~~~~l~~~gi~v~~~~~~~~~Ri~~~~~~~~e~i~~~~~~l~~~l~ 396 (397)
T 3f9t_A 351 VCKKLRDRGIYVSVCNCVKALRIVVMPHIKREHIDNFIEILNSIKR 396 (397)
T ss_dssp HHHHHHHTTCBCEECSSSSEEEEECCTTCCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHhCCeEEeccCCCCEEEEEEcCCCCHHHHHHHHHHHHHhhC
Confidence 9999999999999875 58999999988999999999999998765
No 106
>3g7q_A Valine-pyruvate aminotransferase; NP_462565.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Salmonella typhimurium}
Probab=99.96 E-value=1e-28 Score=233.84 Aligned_cols=303 Identities=12% Similarity=0.089 Sum_probs=201.4
Q ss_pred CCcHHHHHHHHhccc--------CCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEe-ccCCCCcccccccc
Q 017259 20 NDKFPVFAERLTSMF--------GYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSC-CGCFHGRTLAAISM 90 (374)
Q Consensus 20 ~~~~~~l~~~l~~~~--------~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~-~~~yhg~~~~~~~~ 90 (374)
.....++++.+++++ ..+++++|+|+++|++.+++++ ..+|.+.++++|++. .|+|+++...+...
T Consensus 74 ~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~t~al~~~~~~l-----~~~gd~~~~~~vi~~~~p~~~~~~~~~~~~ 148 (417)
T 3g7q_A 74 PQGKTALLNALAVLLRETLGWDIEPQNIALTNGSQSAFFYLFNLF-----AGRRADGSTKKVLFPLAPEYIGYADSGLED 148 (417)
T ss_dssp TTSHHHHHHHHHHHHHHHHCCCCCGGGEEEESCHHHHHHHHHHHH-----SBC----CCBEEEESSCCCHHHHHC-----
T ss_pred CCCcHHHHHHHHHHHHHHhCCCCCcccEEEeCCcHHHHHHHHHHH-----cCCCccCCcceEEEeCCCccccchhhccch
Confidence 334556666666653 4569999999999999999998 455510111288886 99998876544222
Q ss_pred cCCccccccCCCCCCCceeccC------CCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCE
Q 017259 91 SCDNEAIRGFGPLLPGHLKVDF------GDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNIL 164 (374)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~------~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~ 164 (374)
...... ...+..++. -|+++++ +. ++++++++++++|++|.+. +.+.+++|.++|++||++
T Consensus 149 ~~~~~~-------~~~~~~~~~~~~~~~~d~~~l~--~~---~~~~~v~~~~p~NptG~~~-~~~~~~~l~~~a~~~~~~ 215 (417)
T 3g7q_A 149 DLFVSA-------RPNIELLPEGQFKYHVDFEHLH--IG---EETGMICVSRPTNPTGNVI-TDEELMKLDRLANQHNIP 215 (417)
T ss_dssp CCEEEC-------CCEEEEEGGGEEEEECCGGGCC--CC---TTEEEEEEESSCTTTCCCC-CHHHHHHHHHHHHHTTCC
T ss_pred hhhccc-------cCcccccCCcccccccCHHHhc--cc---cCceEEEECCCCCCCCCcc-CHHHHHHHHHHHHHcCCE
Confidence 110000 011111111 1667776 33 5789999999999999877 788899999999999999
Q ss_pred EEEeccccCCcccccCc-cc--ccCCCCCcEEEecccccCCccchhhheeCHHHHhhcCCCCCCCCCCCCHHHHHHHHHH
Q 017259 165 MIADEIQSGLARSGRML-AS--DWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIAS 241 (374)
Q Consensus 165 li~Dea~~~~~~~g~~~-~~--~~~~~~~d~~s~sK~~~~G~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~a 241 (374)
+|+||+|+.+. .+..+ .. ...+....+.|+||...+|+ |+||+++++++.+.+.......+++.+++++.++.+.
T Consensus 216 li~De~~~~~~-~~~~~~~~~~~~~~~~i~~~s~sK~~~~G~-r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (417)
T 3g7q_A 216 LVIDNAYGVPF-PGIIFSEARPLWNPNIILCMSLSKLGLPGS-RCGIIIANDKTITAIANMNGIISLAPGGMGPAMMCEM 293 (417)
T ss_dssp EEEECTTCTTT-TCCBCSCCCCCCCTTEEEEEESGGGTCTTS-CCEEEECCHHHHHHHHHHHHHHCCCCCSHHHHHHHHH
T ss_pred EEEeCCCcccc-ccccccccccCCCCCEEEEEechhccCCCc-ceEEEEeCHHHHHHHHHhhcceeeCCCcHHHHHHHHH
Confidence 99999997531 11110 00 11122223559999655798 9999999999988887655556677888998888887
Q ss_pred HHHHhhh-----cHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEecc-CCCchhHHHHHHHHHHCCeEecc
Q 017259 242 LDVIRDE-----KLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDK-TALPVSAYDICLKMKERGILAKP 315 (374)
Q Consensus 242 l~~~~~~-----~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~~l~~~Gi~v~~ 315 (374)
++..... .+.++++++.+.+.+.|++....+ ++....+..+.++|+.++. .. +..++.+.|.++||.+++
T Consensus 294 l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~~~~~~g~~~~~~~~~~~~---~~~~l~~~l~~~gi~v~~ 369 (417)
T 3g7q_A 294 IKRNDLLRLSETVIKPFYYQRVQQTIAIIRRYLSEE-RCLIHKPEGAIFLWLWFKDLPI---TTELLYQRLKARGVLMVP 369 (417)
T ss_dssp HHTTCHHHHHHHTHHHHHHHHHHHHHHHHHHHCCTT-TCEEECCCBSSEEEEECTTCSS---CHHHHHHHHHHTTEECEE
T ss_pred HcCcchHHHHHHHHHHHHHHHHHHHHHHHHHhcccC-CceeeCCCcceEEEEEcCCCCC---CHHHHHHHHHHCCEEEEC
Confidence 7642211 134455556666666665542211 1222223457888888865 22 678999999999999987
Q ss_pred CC-------------CCEEEEecCCCCCHHHHHHHHHHHHHHHhccC
Q 017259 316 TH-------------DTIVRLTPPLSISSNELQEGSKALHDVLELDL 349 (374)
Q Consensus 316 ~~-------------~~~lRi~~~~~~~~e~i~~~~~~l~~~~~~~~ 349 (374)
+. .+++||+++. +++++++++++|+++++ ++
T Consensus 370 g~~f~~~~~~~~~~~~~~iRis~~~--~~~~i~~~~~~l~~~l~-~~ 413 (417)
T 3g7q_A 370 GHYFFPGLDKPWPHTHQCMRMNYVP--EPDKIEAGVKILAEEIE-RA 413 (417)
T ss_dssp GGGGCTTBSSCCGGGGGEEEEESCS--CHHHHHHHHHHHHHHHH-HH
T ss_pred chhhCCCCccccccCCCeEEEEecC--CHHHHHHHHHHHHHHHH-HH
Confidence 42 4699999774 99999999999999987 54
No 107
>3kgw_A Alanine-glyoxylate aminotransferase; AAH25799.1, putative aminotransferase, structural genomics, center for structural genomics, JCSG; HET: PLP; 1.65A {Mus musculus} SCOP: c.67.1.3 PDB: 3kgx_A 3imz_A* 3r9a_A* 1h0c_A* 1j04_A*
Probab=99.96 E-value=2.3e-28 Score=229.21 Aligned_cols=296 Identities=16% Similarity=0.183 Sum_probs=210.5
Q ss_pred CCcHHHHHHHHhcccCCC---eEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccc-cccccCCcc
Q 017259 20 NDKFPVFAERLTSMFGYD---MVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLA-AISMSCDNE 95 (374)
Q Consensus 20 ~~~~~~l~~~l~~~~~~~---~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~-~~~~~~~~~ 95 (374)
.+...+++++++++++.+ ++++++||++|++.+++.+ .++| |+|++..++|++.... .....+...
T Consensus 55 ~~~~~~l~~~la~~~~~~~~~~v~~~~gg~~al~~~~~~~-----~~~g-----d~vl~~~~~~~~~~~~~~~~~~g~~~ 124 (393)
T 3kgw_A 55 LQIMEEIKQGIQYVFQTRNPLTLVVSGSGHCAMETALFNL-----LEPG-----DSFLTGTNGIWGMRAAEIADRIGARV 124 (393)
T ss_dssp HHHHHHHHHHHHHHHTCCCSEEEEESCCTTTHHHHHHHHH-----CCTT-----CEEEEEESSHHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHHHHHHHhCCCCCcEEEEeCCcHHHHHHHHHhc-----CCCC-----CEEEEEeCCchhHHHHHHHHHcCCce
Confidence 445678899999988654 5899999999999999988 5667 9999999888653211 111111111
Q ss_pred ccccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEeccccCCc
Q 017259 96 AIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLA 175 (374)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~~~~ 175 (374)
... +...+. ..|+++++++++++ +++++++++++|++|.+.+ +++|.++|++||++||+||+|+ ++
T Consensus 125 ~~~---~~~~~~----~~d~~~l~~~i~~~--~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~De~~~-~g 190 (393)
T 3kgw_A 125 HQM---IKKPGE----HYTLQEVEEGLAQH--KPVLLFLVHGESSTGVVQP----LDGFGELCHRYQCLLLVDSVAS-LG 190 (393)
T ss_dssp EEE---ECCTTC----CCCHHHHHHHHHHH--CCSEEEEESEETTTTEECC----CTTHHHHHHHTTCEEEEECTTT-TT
T ss_pred EEE---eCCCCC----CCCHHHHHHHHhhC--CCcEEEEeccCCcchhhcc----HHHHHHHHHHcCCEEEEECCcc-cc
Confidence 100 110111 12899999999853 6889999999999999987 9999999999999999999997 21
Q ss_pred ccccCcccccCCCCCcEE--EecccccCCccchhhheeCHHHHhhcCCCCC-----------------------CCCCCC
Q 017259 176 RSGRMLASDWEEVRPDMV--ILGKALGGGVIPVSAVLADKEVMLCIQPGEH-----------------------GSTFGG 230 (374)
Q Consensus 176 ~~g~~~~~~~~~~~~d~~--s~sK~~~~G~~~~G~~~~~~~~~~~~~~~~~-----------------------~~~~~~ 230 (374)
+..+.... ...|++ +++|+++++. ++|++++++++.+.+..... ...++.
T Consensus 191 --~~~~~~~~--~~~d~~~~s~sK~~~~~~-g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (393)
T 3kgw_A 191 --GVPIYMDQ--QGIDIMYSSSQKVLNAPP-GISLISFNDKAKYKVYSRKTKPVSFYTDITYLAKLWGCEGETRVIHHTT 265 (393)
T ss_dssp --TSCCCTTT--TTCCEEEEESSSTTCCCS-SCEEEEECHHHHHHHHTCSSCCSCSTTCHHHHHHHTTCSSSCCCCCCCC
T ss_pred --Ccccchhh--cCCCEEEecCcccccCCC-ceeEEEECHHHHHHHhccCCCCCceeecHHHHHHhhhhccccCCCCCCC
Confidence 11222222 234655 5559998877 88999999998887753211 123456
Q ss_pred CHHHHHHHHHHHHHHhh---hcHHHHHHHHHHHHHHHHHHHHHhCCCce-ee-EEEEeeeEEEEeccCCCchhHHHHHHH
Q 017259 231 NPLASAVAIASLDVIRD---EKLAERSAHLGEELRQHLFKIQQQFPNYV-KE-VRGRGLFNAVEFDKTALPVSAYDICLK 305 (374)
Q Consensus 231 ~~~~~~aa~~al~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~ 305 (374)
+..+++++.++++.+.+ +++.++++++++++.+.|+++. + ... .. ....+.++++.++... +..++.+.
T Consensus 266 ~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g--~-~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~ 339 (393)
T 3kgw_A 266 PVTSLYCLRESLALIAEQGLENCWRRHREATAHLHKHLQEMG--L-KFFVKDPEIRLPTITTVTVPAGY---NWRDIVSY 339 (393)
T ss_dssp CHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTT--C-CBSSSSGGGBCSSEEEEECCTTB---CHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHcC--C-eeccCChhhcCCeEEEEeCCCCC---CHHHHHHH
Confidence 78888888888887655 3567778888888888887762 2 111 11 1123456667776443 67899999
Q ss_pred HHHC-CeEeccC----CCCEEEEec-CCCCCHHHHHHHHHHHHHHHhccCCc
Q 017259 306 MKER-GILAKPT----HDTIVRLTP-PLSISSNELQEGSKALHDVLELDLPK 351 (374)
Q Consensus 306 l~~~-Gi~v~~~----~~~~lRi~~-~~~~~~e~i~~~~~~l~~~~~~~~~~ 351 (374)
|+++ ||.++++ .++++|+++ +...+++++++++++|+++++ ++.+
T Consensus 340 l~~~~gi~v~~g~~~~~~~~iRi~~~~~~~~~~~i~~~~~~l~~~l~-~~~~ 390 (393)
T 3kgw_A 340 VLDHFSIEISGGLGPTEERVLRIGLLGYNATTENVDRVAEALREALQ-HCPK 390 (393)
T ss_dssp HHHHHCEECBCCCGGGTTTEEEEECCGGGCCHHHHHHHHHHHHHHHH-HSCB
T ss_pred HHHhCCEEEeCCcccCCCCEEEEEecccCCCHHHHHHHHHHHHHHHH-hhhh
Confidence 9988 9999975 368999997 666799999999999999998 7643
No 108
>3d6k_A Putative aminotransferase; APC82464, corynebacterium diphthe structural genomics, PSI-2, protein structure initiative; 2.00A {Corynebacterium diphtheriae}
Probab=99.96 E-value=1.8e-28 Score=232.66 Aligned_cols=306 Identities=14% Similarity=0.106 Sum_probs=209.8
Q ss_pred cHHHHHHHHhcccCC--CeEEecCChHHHH--HHHHHHHHHcccccccCCC----CccEEEEeccCCCCcccccccccCC
Q 017259 22 KFPVFAERLTSMFGY--DMVLPMNTGAEGV--ETALKLARKWGYVKKKFSI----DEAIIVSCCGCFHGRTLAAISMSCD 93 (374)
Q Consensus 22 ~~~~l~~~l~~~~~~--~~~~~~~~gs~a~--~~al~~~~~~~~~~~G~~~----~~~~vi~~~~~yhg~~~~~~~~~~~ 93 (374)
...++++.++++++. +++++|+|+++++ ..+++++.... .+|... +.++|++.+|+|+++...+...+..
T Consensus 77 G~~~lr~~ia~~~~~~~~~i~~t~G~~~al~l~~~~~~l~~~~--~~g~~~~~~~d~~~Vl~~~p~y~~~~~~~~~~g~~ 154 (422)
T 3d6k_A 77 GIADIRELWAEALGLPADLVVAQDGSSLNIMFDLISWSYTWGN--NDSSRPWSAEEKVKWLCPVPGYDRHFTITEHFGFE 154 (422)
T ss_dssp CCHHHHHHHHHHHTCCGGGEEECSSCHHHHHHHHHHHHHHHCC--TTCSSCGGGSSCCEEEEEESCCHHHHHHHHHHTCE
T ss_pred CCHHHHHHHHHHhCCChhHEEEecchHHHHHHHHHHHHhcCcc--cccccccccCCCCEEEEeCCccHHHHHHHHHcCCE
Confidence 378899999988754 5899999999997 56666664210 001000 0168999999998877655544322
Q ss_pred ccccccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEE-ccccCCCCcccCChhHHHHHHHHHH-hcCCEEEEeccc
Q 017259 94 NEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLF-EPIQGEAGVIIPPDGYLKAVRDLCS-KYNILMIADEIQ 171 (374)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~-~~~~~~~g~~~~~~~~l~~l~~l~~-~~~i~li~Dea~ 171 (374)
.... +...+. .|++++++++++ .+++++++ .+++|++|.+. +.+++++|.++|+ +||++||+||+|
T Consensus 155 ~~~v----~~~~~g-----~d~~~l~~~l~~--~~~~~v~~~~~~~NPtG~~~-~~~~l~~l~~~~~~~~~~~li~De~y 222 (422)
T 3d6k_A 155 MINV----PMTDEG-----PDMGVVRELVKD--PQVKGMWTVPVFGNPTGVTF-SEQTCRELAEMSTAAPDFRIVWDNAY 222 (422)
T ss_dssp EEEE----EEETTE-----ECHHHHHHHHTS--TTEEEEEECCSSCTTTCCCC-CHHHHHHHHHCCCSSTTCEEEEECTT
T ss_pred EEec----CCCCCC-----CCHHHHHHHHhc--CCCeEEEEcCCCCCCCCCCC-CHHHHHHHHHHHhhccCCEEEEECCc
Confidence 1111 000000 279999998863 26888884 55788888766 8999999999999 999999999999
Q ss_pred cC--CcccccCc-cc-------ccCCCCCcEEEecccccCCccchhhheeCHHHHhhcCCCCCCCCCCCCHHHHHHHHHH
Q 017259 172 SG--LARSGRML-AS-------DWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIAS 241 (374)
Q Consensus 172 ~~--~~~~g~~~-~~-------~~~~~~~d~~s~sK~~~~G~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~a 241 (374)
+. |...+..+ .. ...+....+.||||..++|+ |+||+++++++++.+.......+++.+.+++.++.++
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~Gl-riG~~~~~~~l~~~l~~~~~~~~~~~~~~~q~a~~~~ 301 (422)
T 3d6k_A 223 ALHTLSDEFPIVHNVIEFAQAAGNPNRFWFMSSTSKITHAGS-GVSFFASSKENIEWYASHANVRGIGPNKLNQLAHAQF 301 (422)
T ss_dssp TTCBSSSCCCCCCCHHHHHHHTTCTTCEEEEEESTTTSCTTS-SCEEEECCHHHHHHHHHHHHHHCSCCCHHHHHHHHHH
T ss_pred cccccCCCCCCCcChhhHhhccCCCCcEEEEcChhhhcCccc-ceEEEEeCHHHHHHHHHHHHhhcCCCCHHHHHHHHHH
Confidence 84 54433211 21 11233334569999966799 9999999999888887554455677899999988888
Q ss_pred HHHHh---h--hcHHHHHHHHHHHHHHHHHHHHHhCCCcee-eEEEEeeeEEEEeccCCCchhHHHHHHHHHHCCeEecc
Q 017259 242 LDVIR---D--EKLAERSAHLGEELRQHLFKIQQQFPNYVK-EVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKP 315 (374)
Q Consensus 242 l~~~~---~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~ 315 (374)
++... . +...+.++++.+++.+.|++....+ +.+. ..+..+.++|+.++.. +..++.+.|.++||.+++
T Consensus 302 l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~l~~~-~~~~~~~p~~g~~~~~~~~~~----~~~~~~~~l~~~gV~v~~ 376 (422)
T 3d6k_A 302 FGDVAGLKAHMLKHAASLAPKFERVLEILDSRLSEY-GVAKWTSPTGGYFISVDVVPG----TASRVVELAKEAGIALTG 376 (422)
T ss_dssp HCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGG-TCEEECCCSBSSCEEEEESTT----CHHHHHHHHHHTTEECCC
T ss_pred HhCcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCcC-CceEEeCCCcceEEEEECCCC----CHHHHHHHHHHCCeEEEc
Confidence 76311 1 1234445556666666666543322 1222 1233578889888753 467788889999999988
Q ss_pred C----------CCCEEEEecCCCCCHHHHHHHHHHHHHHHhccC
Q 017259 316 T----------HDTIVRLTPPLSISSNELQEGSKALHDVLELDL 349 (374)
Q Consensus 316 ~----------~~~~lRi~~~~~~~~e~i~~~~~~l~~~~~~~~ 349 (374)
+ ..+++||+++. .+++++++++++|+++++ ++
T Consensus 377 ~g~~f~~~~~~~~~~iRis~~~-~~~e~i~~~~~~l~~~l~-~~ 418 (422)
T 3d6k_A 377 AGSSFPLHNDPNNENIRLAPSL-PPVAELEVAMDGFATCVL-MA 418 (422)
T ss_dssp TTTTSGGGCCTTSCEEEECCSS-SCHHHHHHHHHHHHHHHH-HH
T ss_pred CccccCCCCCCCCCeEEEecCC-CCHHHHHHHHHHHHHHHH-HH
Confidence 3 14799999776 799999999999999987 54
No 109
>2bwn_A 5-aminolevulinate synthase; tetrapyrrole biosynthesis, heme biosynthesis, pyridoxal PHOS dependent, transferase, acyltransferase; HET: LLP; 2.1A {Rhodobacter capsulatus} SCOP: c.67.1.4 PDB: 2bwo_A* 2bwp_A*
Probab=99.96 E-value=8.5e-28 Score=226.40 Aligned_cols=307 Identities=15% Similarity=0.157 Sum_probs=218.4
Q ss_pred hHHHHHHHhcccc-C----cCCCCCcHHHHHHHHhcccCCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEe
Q 017259 2 KALQEQAEKLTLS-S----RAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSC 76 (374)
Q Consensus 2 ~a~~~~~~~~~~~-~----~~~~~~~~~~l~~~l~~~~~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~ 76 (374)
+|+.+++.+.... . .+...+...++++.++++++.+..++.++|++++..++.++.. ..+| |+|++.
T Consensus 67 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~i~~~sG~~a~~~~~~~l~~---~~~g-----d~Vl~~ 138 (401)
T 2bwn_A 67 AAMHEALEAVGAGSGGTRNISGTTAYHRRLEAEIAGLHQKEAALVFSSAYNANDATLSTLRV---LFPG-----LIIYSD 138 (401)
T ss_dssp HHHHHHHHHHCSCCCSBTTTBCCBHHHHHHHHHHHHHTTCSEEEEESCHHHHHHHHHHHHHH---HSTT-----CEEEEE
T ss_pred HHHHHHHHHcCCCCCCcCcccCChHHHHHHHHHHHHHhCCCcEEEECCcHHHHHHHHHHHhc---CCCC-----CEEEEC
Confidence 5666666653221 1 1123457888999999999877666667777788888877532 2356 899999
Q ss_pred ccCCCCcccccccccCCccccccCCCCCCCceeccCCCHHHHHHHHHhcC-CcEEEEEEccccCCCCcccCChhHHHHHH
Q 017259 77 CGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESG-DQIAGFLFEPIQGEAGVIIPPDGYLKAVR 155 (374)
Q Consensus 77 ~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~-~~~~~vi~~~~~~~~g~~~~~~~~l~~l~ 155 (374)
.++|++........+ ..+..++++|++++++.+++.. ++++++++++++|++|.+.+ +++|.
T Consensus 139 ~~~~~~~~~~~~~~g-------------~~~~~v~~~d~~~le~~l~~~~~~~~~~v~~~~~~nptG~~~~----l~~i~ 201 (401)
T 2bwn_A 139 SLNHASMIEGIKRNA-------------GPKRIFRHNDVAHLRELIAADDPAAPKLIAFESVYSMDGDFGP----IKEIC 201 (401)
T ss_dssp TTCCHHHHHHHHHSC-------------CCEEEECTTCHHHHHHHHHHSCTTSCEEEEEESBCTTTCCBCC----HHHHH
T ss_pred chhhHHHHHHHHHcC-------------CeEEEEcCCCHHHHHHHHHhhccCCceEEEEecCcCCCCCcCC----HHHHH
Confidence 998866544332211 3355566678999999998654 47899999999999999998 99999
Q ss_pred HHHHhcCCEEEEecccc-C-CcccccCcccccCCC--CCc--EEEecccccCCccchhhheeCHHHHhhcCCCCC--CCC
Q 017259 156 DLCSKYNILMIADEIQS-G-LARSGRMLASDWEEV--RPD--MVILGKALGGGVIPVSAVLADKEVMLCIQPGEH--GST 227 (374)
Q Consensus 156 ~l~~~~~i~li~Dea~~-~-~~~~g~~~~~~~~~~--~~d--~~s~sK~~~~G~~~~G~~~~~~~~~~~~~~~~~--~~~ 227 (374)
++|++||+++|+||+|+ + ++..|..+. ...+. .++ +.|+||++++ +.||+++++++.+.+..... ..+
T Consensus 202 ~l~~~~~~~li~Dea~~~g~~~~~g~~~~-~~~~~~~~~~i~~~s~sK~~~~---~GG~~~~~~~~~~~l~~~~~~~~~~ 277 (401)
T 2bwn_A 202 DIAEEFGALTYIDEVHAVGMYGPRGAGVA-ERDGLMHRIDIFNGTLAKAYGV---FGGYIAASARMVDAVRSYAPGFIFS 277 (401)
T ss_dssp HHHHHHTCEEEEECTTTTTTSSTTSCCHH-HHHTCGGGCSEEEEESSSTTCS---CCEEEEECHHHHHHHHHHCHHHHTS
T ss_pred HHHHHcCCEEEEeccccccccCCCCceee-eccCccccCcEEEeechhhccC---CCCEEecCHHHHHHHHHhCcCceec
Confidence 99999999999999999 3 454554332 22232 224 4499999982 22678888887776653211 112
Q ss_pred CCCCHHHHHHHHHHHHHHhhh---cHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCchhHHHHHH
Q 017259 228 FGGNPLASAVAIASLDVIRDE---KLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICL 304 (374)
Q Consensus 228 ~~~~~~~~~aa~~al~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 304 (374)
.+.++++++++.++++.+... ++.++++++.+++.+.|+++ .+ .+. .+.+.++++.++.. .+..++.+
T Consensus 278 ~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~--g~-~~~---~~~~~~~~~~~~~~---~~~~~~~~ 348 (401)
T 2bwn_A 278 TSLPPAIAAGAQASIAFLKTAEGQKLRDAQQMHAKVLKMRLKAL--GM-PII---DHGSHIVPVVIGDP---VHTKAVSD 348 (401)
T ss_dssp BCCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHH--TC-CBC---CCSSSCEEEECCCH---HHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHC--CC-ccc---CCCCCeEEEEeCCh---HHHHHHHH
Confidence 234668888888999887553 67788888889998888876 22 122 12356788877542 25778999
Q ss_pred HHH-HCCeEeccCC-------CCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 017259 305 KMK-ERGILAKPTH-------DTIVRLTPPLSISSNELQEGSKALHDVLE 346 (374)
Q Consensus 305 ~l~-~~Gi~v~~~~-------~~~lRi~~~~~~~~e~i~~~~~~l~~~~~ 346 (374)
.|+ ++||.+++.. .+++|++++..++++++++++++|+++++
T Consensus 349 ~L~~~~gi~v~~~~~~~~~~~~~~iRis~~~~~t~~~i~~~~~~l~~~~~ 398 (401)
T 2bwn_A 349 MLLSDYGVYVQPINFPTVPRGTERLRFTPSPVHDLKQIDGLVHAMDLLWA 398 (401)
T ss_dssp HHHHHHCEECCEECTTTSCTTCCEEEECCCTTSCHHHHHHHHHHHHHHC-
T ss_pred HHHhcCCEEEeecCCCCCCCCCceEEEEeeCCCCHHHHHHHHHHHHHHHH
Confidence 996 7899997642 25899999988999999999999998876
No 110
>3nnk_A Ureidoglycine-glyoxylate aminotransferase; PLP-dependent; HET: LLP; 2.58A {Klebsiella pneumoniae}
Probab=99.96 E-value=7.1e-28 Score=227.42 Aligned_cols=288 Identities=17% Similarity=0.129 Sum_probs=209.9
Q ss_pred CcHHHHHHHHhcccCCC--e-EEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCc--ccccccccCCcc
Q 017259 21 DKFPVFAERLTSMFGYD--M-VLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGR--TLAAISMSCDNE 95 (374)
Q Consensus 21 ~~~~~l~~~l~~~~~~~--~-~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~--~~~~~~~~~~~~ 95 (374)
+...+++++++++++.+ + +++++||++|++.+++.+ ..+| |+|++.+++||+. ...+...+.
T Consensus 46 ~~~~~~~~~la~~~~~~~~~~v~~~~sgt~al~~~~~~~-----~~~g-----d~Vl~~~~~~~~~~~~~~~~~~g~--- 112 (411)
T 3nnk_A 46 HYMNEVMALYRGVFRTENRWTMLVDGTSRAGIEAILVSA-----IRPG-----DKVLVPVFGRFGHLLCEIARRCRA--- 112 (411)
T ss_dssp HHHHHHHHHHHHHHTCCCSEEEEEESCHHHHHHHHHHHH-----CCTT-----CEEEEEECSHHHHHHHHHHHHTTC---
T ss_pred HHHHHHHHHHHHHhCCCCCcEEEECCCcHHHHHHHHHHh-----cCCC-----CEEEEecCCchHHHHHHHHHHcCC---
Confidence 45678899999988654 3 789999999999999988 5667 9999999999873 222222111
Q ss_pred ccccCCCCCCCceeccCC-----CHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEecc
Q 017259 96 AIRGFGPLLPGHLKVDFG-----DITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEI 170 (374)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~-----d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea 170 (374)
.+..++.+ |+++++++++++ +++++++++++|++|.+.+ +++|.++|++||+++|+||+
T Consensus 113 ----------~~~~v~~~~~~~~d~~~l~~~i~~~--~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~Dea 176 (411)
T 3nnk_A 113 ----------EVHTIEVPWGEVFTPDQVEDAVKRI--RPRLLLTVQGDTSTTMLQP----LAELGEICRRYDALFYTDAT 176 (411)
T ss_dssp ----------EEEEEECCTTCCCCHHHHHHHHHHH--CCSEEEEESEETTTTEECC----CTTHHHHHHHHTCEEEEECT
T ss_pred ----------eEEEEecCCCCCCCHHHHHHHHhhC--CCeEEEEeCCCCCcceecc----HHHHHHHHHHcCCEEEEECC
Confidence 12222222 899999999853 6889999999999999988 99999999999999999999
Q ss_pred ccCCcccccCcccccCCCCCcEE--EecccccCCccchhhheeCHHHHhhcCCCC-------------------------
Q 017259 171 QSGLARSGRMLASDWEEVRPDMV--ILGKALGGGVIPVSAVLADKEVMLCIQPGE------------------------- 223 (374)
Q Consensus 171 ~~~~~~~g~~~~~~~~~~~~d~~--s~sK~~~~G~~~~G~~~~~~~~~~~~~~~~------------------------- 223 (374)
|+.. ...+... ...+|++ +++|+++++. ++|+++.++++.+.+....
T Consensus 177 ~~~~---~~~~~~~--~~~~d~~~~s~~K~l~~~~-g~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~gg~~~~~~~~~~~ 250 (411)
T 3nnk_A 177 ASLG---GNPLETD--VWGLDAVSAGMQKCLGGPS-GTSPITLSARMEEAIRRRKCVEEGIRTDAHRDGDEEMIYSNYFD 250 (411)
T ss_dssp TTBT---TBCCCTT--TTTCSEEECCSTTTTCCCS-SEEEEEECHHHHHHHHTTCCCCGGGCCTTCCCCSSCCCSCSTTC
T ss_pred cccC---Ccccchh--ccCCcEEEecCccccCCCC-ceEEEEECHHHHHHHhhcccccccccccccccccCCCCcccccc
Confidence 8721 1112222 2235665 5569988877 8899999998877665421
Q ss_pred -----------CCCCCCCCHHHHHHHHHHHHHHhhh---cHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEE
Q 017259 224 -----------HGSTFGGNPLASAVAIASLDVIRDE---KLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVE 289 (374)
Q Consensus 224 -----------~~~~~~~~~~~~~aa~~al~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~ 289 (374)
....++.+..+++++.++++.+.++ ++.++++++.+++.+.|+++...+ ........+.++++.
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~--~~~~~~~~~~~~~~~ 328 (411)
T 3nnk_A 251 LGMVMDYWGPERLNHHTEATTALFGARECARLILQEGLDYGIARHKLHGDALVKGIQAMGLET--FGDLKHKMNNVLGVV 328 (411)
T ss_dssp HHHHHHHHSTTCCCCSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCB--CSCGGGBCSSEEEEE
T ss_pred hHHHHhhhccccCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHcCCEe--CCCcccccccEEEEE
Confidence 1122355778888888888876553 567778888888888887752111 111112246777877
Q ss_pred eccCCCchhHHHHHHHHHHC-CeEeccC----CCCEEEEec-CCCCCHHHHHHHHHHHHHHHhccC
Q 017259 290 FDKTALPVSAYDICLKMKER-GILAKPT----HDTIVRLTP-PLSISSNELQEGSKALHDVLELDL 349 (374)
Q Consensus 290 ~~~~~~~~~~~~~~~~l~~~-Gi~v~~~----~~~~lRi~~-~~~~~~e~i~~~~~~l~~~~~~~~ 349 (374)
+++.. +..++.+.|.++ ||.++++ .++++||++ +...+++++++++++|+++++ ++
T Consensus 329 ~~~~~---~~~~l~~~l~~~~gi~v~~g~~~~~~~~iRi~~~~~~~~~~~i~~~~~~l~~~l~-~~ 390 (411)
T 3nnk_A 329 IPQGI---NGDQARKLMLEDFGIEIGTSFGPLHGKVWRIGTMGYNARKDCVMTTLSALEAVLN-YL 390 (411)
T ss_dssp CCTTC---CHHHHHHHHHHHHSEEEEECCGGGTTTEEEEECCGGGCSHHHHHHHHHHHHHHHH-HT
T ss_pred CCCCC---CHHHHHHHHHHhcCeEEeCccCCCCCCEEEEeCccCcCCHHHHHHHHHHHHHHHH-Hc
Confidence 76443 688999999887 9999875 367999997 777799999999999999998 65
No 111
>3ei9_A LL-diaminopimelate aminotransferase; lysine biosynthesis, pyridoxal 5' phosphat external aldimine, chloroplast, pyridox phosphate; HET: PL6; 1.55A {Arabidopsis thaliana} PDB: 3ei8_A* 3eib_A* 3ei6_A* 2z1z_A* 3ei5_A* 2z20_A* 3ei7_A 3eia_A*
Probab=99.96 E-value=2.3e-28 Score=232.64 Aligned_cols=319 Identities=11% Similarity=0.063 Sum_probs=208.5
Q ss_pred hHHHHHHHhccc--cC-cCCCCCcHHHHHHHHhccc------CCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccE
Q 017259 2 KALQEQAEKLTL--SS-RAFYNDKFPVFAERLTSMF------GYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAI 72 (374)
Q Consensus 2 ~a~~~~~~~~~~--~~-~~~~~~~~~~l~~~l~~~~------~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~ 72 (374)
+|+.+++++... .. .+.+.....++++.+++++ ..+++++++|+++++..+ ..+ ..+| |+
T Consensus 76 ~a~~~~~~~~~~~~~~~~y~~~~g~~~l~~~ia~~~~~~~~~~~~~i~~t~G~~~al~~l-~~l-----~~~g-----d~ 144 (432)
T 3ei9_A 76 SAMAKKAHELSTIEGYSGYGAEQGAKPLRAAIAKTFYGGLGIGDDDVFVSDGAKCDISRL-QVM-----FGSN-----VT 144 (432)
T ss_dssp HHHHHHHHHTTSTTTCCCCCCTTCCHHHHHHHHHHHHTTTTCCGGGEEEESCHHHHHHHH-HHH-----HCTT-----CC
T ss_pred HHHHHHHhcccccCCccCCCCCCCCHHHHHHHHHHHHccCCCCcceEEECCChHHHHHHH-HHH-----cCCC-----CE
Confidence 566666664322 11 2222345677778887764 456899999999999864 444 3567 99
Q ss_pred EEEeccCCCCcccccccccCCccccccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHH
Q 017259 73 IVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLK 152 (374)
Q Consensus 73 vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~ 152 (374)
|++.+|+|+++...+........+.. ......++..+++++...+...+.+. ++++++++++++|++|.+. +.+.++
T Consensus 145 Vl~~~p~y~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~v~l~~p~NPtG~~~-~~~~l~ 221 (432)
T 3ei9_A 145 IAVQDPSYPAYVDSSVIMGQTGQFNT-DVQKYGNIEYMRCTPENGFFPDLSTV-GRTDIIFFCSPNNPTGAAA-TREQLT 221 (432)
T ss_dssp EEEEESCCTHHHHHHHHHTCSCCEET-TTTEETTCEEEECCGGGTTSCCGGGC-CCCSEEEEESSCTTTCCCC-CHHHHH
T ss_pred EEEeCCCCHHHHHHHHHcCCcccccc-cccccCceEEeccCcccCCcCChhhC-CCCCEEEEeCCCCCCCCCC-CHHHHH
Confidence 99999999987666554443221110 00000123333333111111112222 4678888888889999877 799999
Q ss_pred HHHHHHHhcCCEEEEeccccCCcccccCcccccC-C---CCCcEEEeccccc-CCccchhhheeCHHH--------Hhhc
Q 017259 153 AVRDLCSKYNILMIADEIQSGLARSGRMLASDWE-E---VRPDMVILGKALG-GGVIPVSAVLADKEV--------MLCI 219 (374)
Q Consensus 153 ~l~~l~~~~~i~li~Dea~~~~~~~g~~~~~~~~-~---~~~d~~s~sK~~~-~G~~~~G~~~~~~~~--------~~~~ 219 (374)
+|+++|++||++||+||+|+++...+........ + ....+.|+||.++ +|+ |+||+++++++ .+.+
T Consensus 222 ~l~~la~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~-r~G~~~~~~~~~~~~~~~~~~~~ 300 (432)
T 3ei9_A 222 QLVEFAKKNGSIIVYDSAYAMYMSDDNPRSIFEIPGAEEVAMETASFSNYAGFTGV-RLGWTVIPKKLLYSDGFPVAKDF 300 (432)
T ss_dssp HHHHHHHHHTCEEEEECTTGGGCCSSCCSSGGGSTTGGGTEEEEEESHHHHCTTTT-CCEEEECCTTCBCTTSCBHHHHH
T ss_pred HHHHHHHHcCcEEEEccchHhhccCCCCCChhhcCCCCCeEEEEecchhccCCccc-ceEEEEEChHHhhcchHHHHHHH
Confidence 9999999999999999999987544433222222 1 1123458999998 899 99999988776 4444
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHhh---hcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCc
Q 017259 220 QPGEHGSTFGGNPLASAVAIASLDVIRD---EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALP 296 (374)
Q Consensus 220 ~~~~~~~~~~~~~~~~~aa~~al~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 296 (374)
........++.+++++.++.+++..... +++.++++++.+++.+.|++. ++.......+.++|+.++..
T Consensus 301 ~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-----g~~~~~~~~~~~~~~~~~~~--- 372 (432)
T 3ei9_A 301 NRIICTCFNGASNISQAGALACLTPEGLEAMHKVIGFYKENTNIIIDTFTSL-----GYDVYGGKNAPYVWVHFPNQ--- 372 (432)
T ss_dssp HHHHHHSCCCSCHHHHHHHHHHSSHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----TCCEEECSSSSEEEEECTTS---
T ss_pred HHHhccccCCCCHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHC-----CceecCCCcceEEEEECCCC---
Confidence 4322233456788999888888753111 245666667777777777654 22221223567888888743
Q ss_pred hhHHHHHHHHHHC-CeEeccC------CCCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 017259 297 VSAYDICLKMKER-GILAKPT------HDTIVRLTPPLSISSNELQEGSKALHDVLE 346 (374)
Q Consensus 297 ~~~~~~~~~l~~~-Gi~v~~~------~~~~lRi~~~~~~~~e~i~~~~~~l~~~~~ 346 (374)
+..++++.|+++ ||.+.++ +.+++||+ +..+++++++++++|++--.
T Consensus 373 -~~~~~~~~ll~~~gv~v~~g~~f~~~~~~~iRis--~~~~~e~l~~~l~rl~~~~~ 426 (432)
T 3ei9_A 373 -SSWDVFAEILEKTHVVTTPGSGFGPGGEGFVRVS--AFGHRENILEACRRFKQLYK 426 (432)
T ss_dssp -CHHHHHHHHHHHHCEECEEGGGGCGGGTTEEEEE--CCSCHHHHHHHHHHHHHHHT
T ss_pred -CHHHHHHHHHHHCCEEEeCchHhCCCCCCEEEEE--ecCCHHHHHHHHHHHHHHhh
Confidence 577888888865 9999874 26899999 56799999999999987654
No 112
>3b1d_A Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococcus anginosus} PDB: 3b1c_A* 3b1e_A*
Probab=99.92 E-value=9.1e-31 Score=246.04 Aligned_cols=299 Identities=11% Similarity=0.099 Sum_probs=201.5
Q ss_pred CCcHHHHHHHHhcccC----CCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccCCcc
Q 017259 20 NDKFPVFAERLTSMFG----YDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNE 95 (374)
Q Consensus 20 ~~~~~~l~~~l~~~~~----~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~ 95 (374)
.++++.+++++.+.+| .+++++++|+++|++.+++++ ..+| |+|++..|+||+....+...+....
T Consensus 69 ~~l~~~la~~l~~~~g~~~~~~~v~~~~g~~~a~~~~~~~~-----~~~g-----d~vl~~~p~~~~~~~~~~~~g~~~~ 138 (392)
T 3b1d_A 69 DELLQAVLDWEKSEHQYSFDKEDIVFVEGVVPAISIAIQAF-----TKEG-----EAVLINSPVYPPFARSVRLNNRKLV 138 (392)
Confidence 3444555555554444 568999999999999999988 4556 9999999999998765544332211
Q ss_pred ccccCCCCCCCceeccC-CCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEeccccCC
Q 017259 96 AIRGFGPLLPGHLKVDF-GDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGL 174 (374)
Q Consensus 96 ~~~~~~~~~~~~~~~~~-~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~~~ 174 (374)
.. +..... -.+ .|++++++++++ ++++++++++++|++|.+. +++.+++|.++|++||++||+||+|+++
T Consensus 139 ~~----~~~~~~--g~~~~d~~~l~~~l~~--~~~~~v~~~~~~nptG~~~-~~~~l~~l~~~~~~~~~~li~De~~~~~ 209 (392)
T 3b1d_A 139 SN----SLKEEN--GLFQIDFEQLENDIVE--NDVKLYLLCNPHNPGGRVW-EREVLEQIGHLCQKHHVILVSDEIHQDL 209 (392)
Confidence 10 100000 000 267888888863 3577888888888888776 7889999999999999999999999988
Q ss_pred cccccCc----cccc--CCCCCcEEEeccccc-CCccchhhheeCH-HHHhhcCCCCCCCCC-CCCHHHHHHHHHHHHHH
Q 017259 175 ARSGRML----ASDW--EEVRPDMVILGKALG-GGVIPVSAVLADK-EVMLCIQPGEHGSTF-GGNPLASAVAIASLDVI 245 (374)
Q Consensus 175 ~~~g~~~----~~~~--~~~~~d~~s~sK~~~-~G~~~~G~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~aa~~al~~~ 245 (374)
.+.|..+ .... .+..+.+.|+||.++ +|+ |+||+++++ ++++.+.......++ +.++++++++.++++..
T Consensus 210 ~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~-r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~ 288 (392)
T 3b1d_A 210 TLFGHEHVSFNTVSPDFKDFALVLSSATKTFNIAGT-KNSYAIIENPTLCAQFKHQQLVNNHHEVSSLGYIATETAYRYG 288 (392)
Confidence 6655321 1111 233345669999998 898 999998865 488888765444443 45888888888888742
Q ss_pred hh--hcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeE-EEEeccCCCchhHHHHHHHHH-HCCeEeccC-----
Q 017259 246 RD--EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFN-AVEFDKTALPVSAYDICLKMK-ERGILAKPT----- 316 (374)
Q Consensus 246 ~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~l~-~~Gi~v~~~----- 316 (374)
.+ ++..++++++.+++.+.|++. +|+ +....+.+.++ |+.++.. +.+..++++.|+ ++||.+.++
T Consensus 289 ~~~~~~~~~~~~~~~~~l~~~l~~~---~~~-~~~~~~~~~~~~~i~~~~~--~~~~~~l~~~l~~~~gi~v~~g~~f~~ 362 (392)
T 3b1d_A 289 KPWLVALKAVLEENIQFAVEYFAQE---APR-LKVMKPQGTYLIWLDFSDY--GLTDDALFTLLHDQAKVILNRGSDYGS 362 (392)
Confidence 11 133444455555555555441 222 22234444444 5676542 014678999997 789999875
Q ss_pred -CCCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 017259 317 -HDTIVRLTPPLSISSNELQEGSKALHDVLE 346 (374)
Q Consensus 317 -~~~~lRi~~~~~~~~e~i~~~~~~l~~~~~ 346 (374)
..+++||++. .+++++++++++|+++++
T Consensus 363 ~~~~~iRi~~~--~~~e~i~~~l~~l~~~l~ 391 (392)
T 3b1d_A 363 EGELHARLNIA--APKSLVEEICKRIVCCLP 391 (392)
Confidence 2578999954 468899999999988775
No 113
>3zrp_A Serine-pyruvate aminotransferase (AGXT); HET: PLP; 1.75A {Sulfolobus solfataricus} PDB: 3zrq_A* 3zrr_A*
Probab=99.96 E-value=1.4e-27 Score=223.26 Aligned_cols=287 Identities=15% Similarity=0.148 Sum_probs=209.1
Q ss_pred CCcHHHHHHHHhcccCCC----eEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccc-cccCCc
Q 017259 20 NDKFPVFAERLTSMFGYD----MVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAI-SMSCDN 94 (374)
Q Consensus 20 ~~~~~~l~~~l~~~~~~~----~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~-~~~~~~ 94 (374)
.+...+++++++++++.+ ++++++||++|++ ++..+ .++| |+|++.+++||+...... ...+
T Consensus 34 ~~~~~~~~~~la~~~~~~~~~~~v~~~~g~t~al~-~~~~~-----~~~g-----d~vi~~~~~~~~~~~~~~~~~~g-- 100 (384)
T 3zrp_A 34 VEALAYSLKGLRYVMGASKNYQPLIIPGGGTSAME-SVTSL-----LKPN-----DKILVVSNGVFGDRWEQIFKRYP-- 100 (384)
T ss_dssp HHHHHHHHHHHHHHHTCCTTSEEEEEESCHHHHHH-HGGGG-----CCTT-----CEEEEECSSHHHHHHHHHHTTSS--
T ss_pred HHHHHHHHHHHHHHhCCCCCCcEEEEcCCcHHHHH-HHHhh-----cCCC-----CEEEEecCCcchHHHHHHHHHcC--
Confidence 456778899999988654 5999999999999 88766 5667 999999999987432211 1111
Q ss_pred cccccCCCCCCCceeccC-----CCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEec
Q 017259 95 EAIRGFGPLLPGHLKVDF-----GDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADE 169 (374)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~-----~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~De 169 (374)
..+..++. .|+++++++++++ +++++++++++|++|.+.+ +++|.++|++||++||+|+
T Consensus 101 ----------~~~~~v~~~~~~~~d~~~l~~~i~~~--~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~D~ 164 (384)
T 3zrp_A 101 ----------VNVKVLRPSPGDYVKPGEVEEEVRKS--EYKLVALTHVETSTGVREP----VKDVINKIRKYVELIVVDG 164 (384)
T ss_dssp ----------CEEEEECCSTTCCCCHHHHHHHHHHS--CEEEEEEESEETTTTEECC----HHHHHHHHGGGEEEEEEEC
T ss_pred ----------CcEEEecCCCCCCCCHHHHHHHHHhC--CCcEEEEeCCCCCCceECc----HHHHHHHHHhcCCEEEEEC
Confidence 11122222 2899999999853 6899999999999999998 9999999999999999999
Q ss_pred cccCCcccccCcccccCCCCCcEE--EecccccCCccchhhheeCHHHHhhc-CCCC---------------------CC
Q 017259 170 IQSGLARSGRMLASDWEEVRPDMV--ILGKALGGGVIPVSAVLADKEVMLCI-QPGE---------------------HG 225 (374)
Q Consensus 170 a~~~~~~~g~~~~~~~~~~~~d~~--s~sK~~~~G~~~~G~~~~~~~~~~~~-~~~~---------------------~~ 225 (374)
+|+... ..... ....+|++ |++|+++++. ++|++++++++.+.+ .+.. ..
T Consensus 165 a~~~~~---~~~~~--~~~~~d~~~~s~~K~~~~~~-g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (384)
T 3zrp_A 165 VSSVGA---EEVKA--EEWNVDVYLTASQKALGSAA-GLGLLLLSPKALSILDSQNSIAGYYLDLRNWLPVMRGAEEGKA 238 (384)
T ss_dssp TTTTTT---SCCCT--TTTTCSEEEEETTSTTCCCS-SEEEEEECHHHHHHHHHCCCSCCSTTCHHHHHHHHHHHHTTCC
T ss_pred cccccC---ccccc--cccCCCEEEecCcccccCCC-ceEEEEECHHHHHHhcCCCCCCcccccHHHHHHHHHhhcccCC
Confidence 997321 11111 22345665 5569998877 889999999887776 2100 22
Q ss_pred CCC-CCCHHHHHHHHHHHHHHhhh---cHHHHHHHHHHHHHHHHHHHHHhCCCcee-e-EEEEeeeEEEEeccCCCchhH
Q 017259 226 STF-GGNPLASAVAIASLDVIRDE---KLAERSAHLGEELRQHLFKIQQQFPNYVK-E-VRGRGLFNAVEFDKTALPVSA 299 (374)
Q Consensus 226 ~~~-~~~~~~~~aa~~al~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~-~~~~g~~~~~~~~~~~~~~~~ 299 (374)
..+ +.+...+.++.++++.+... ++.++++++.+++.+.|++.. + .... . ....+.++++.++.. +.
T Consensus 239 ~~~g~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g--~-~~~~~~~~~~~~~~~~~~~~~~----~~ 311 (384)
T 3zrp_A 239 AYFATPPVHVILQLAEAFRLIEKEGIENRIKRHTMVASAIRAGLEALG--L-EIVARRPESYSNTVTGVILKVA----DP 311 (384)
T ss_dssp CCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTT--C-CBSCSSGGGBCSSEEEEECSSS----CH
T ss_pred CcCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHCC--C-eEccCcccccCccEEEEECCCC----CH
Confidence 223 55777777777788776543 567777888888888887762 2 1111 1 112466777777653 68
Q ss_pred HHHHHHHHHCCeEeccCC-C--CEEEEecCCCCCHHHHHHHHHHHHHHHhccC
Q 017259 300 YDICLKMKERGILAKPTH-D--TIVRLTPPLSISSNELQEGSKALHDVLELDL 349 (374)
Q Consensus 300 ~~~~~~l~~~Gi~v~~~~-~--~~lRi~~~~~~~~e~i~~~~~~l~~~~~~~~ 349 (374)
.++.+.|.++||.++++. . +++|++++..++++++++++++|+++++ ++
T Consensus 312 ~~~~~~l~~~gi~v~~g~~~~~~~iRi~~~~~~~~e~i~~~~~~l~~~l~-~~ 363 (384)
T 3zrp_A 312 QKVLAGTVNEGVEFAPGVHPAFKYFRIGHMGWVTPNDAIIAISVIERTLR-KL 363 (384)
T ss_dssp HHHHHHHHTTTCCCEECCCTTCCEEEEECCSSCCHHHHHHHHHHHHHHHH-HH
T ss_pred HHHHHHHHHCCEEEecCCCCCcCEEEEeccccCCHHHHHHHHHHHHHHHH-Hc
Confidence 899999999999998764 1 7899999888999999999999999998 65
No 114
>1t3i_A Probable cysteine desulfurase; PLP-binding enzyme, transferase; HET: 2OS PLP; 1.80A {Synechocystis SP} SCOP: c.67.1.3
Probab=99.96 E-value=2.2e-27 Score=224.61 Aligned_cols=294 Identities=14% Similarity=0.138 Sum_probs=205.0
Q ss_pred CcHHHHHHHHhcccCC---CeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCccccc----ccccCC
Q 017259 21 DKFPVFAERLTSMFGY---DMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAA----ISMSCD 93 (374)
Q Consensus 21 ~~~~~l~~~l~~~~~~---~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~----~~~~~~ 93 (374)
+...++++.++++++. +++++++||++|++.+++++.... ..+| |+|++.+++||+..... ...+..
T Consensus 72 ~~~~~l~~~la~~~~~~~~~~v~~~~g~t~a~~~~~~~~~~~~-~~~g-----d~Vl~~~~~~~~~~~~~~~~~~~~g~~ 145 (420)
T 1t3i_A 72 DAYEAVRNKVAKFINARSPREIVYTRNATEAINLVAYSWGMNN-LKAG-----DEIITTVMEHHSNLVPWQMVAAKTGAV 145 (420)
T ss_dssp HHHHHHHHHHHHHTTCSCGGGEEEESSHHHHHHHHHHHTHHHH-CCTT-----CEEEEETTCCGGGTHHHHHHHHHHCCE
T ss_pred HHHHHHHHHHHHHcCCCCCCeEEEcCChHHHHHHHHHHhhhcc-cCCC-----CEEEECcchhHHHHHHHHHHHHhcCcE
Confidence 5577899999999887 789999999999999999883211 3456 99999999999853211 111111
Q ss_pred ccccccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEeccccC
Q 017259 94 NEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSG 173 (374)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~~ 173 (374)
... .+...+.. .|+++++++++ ++++++++++++|++|.+.+ +++|.++|++||++||+||+|+.
T Consensus 146 ~~~----v~~~~~~~----~d~~~l~~~l~---~~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~D~a~~~ 210 (420)
T 1t3i_A 146 LKF----VQLDEQES----FDLEHFKTLLS---EKTKLVTVVHISNTLGCVNP----AEEIAQLAHQAGAKVLVDACQSA 210 (420)
T ss_dssp EEE----ECBCTTSS----BCHHHHHHHCC---TTEEEEEEESBCTTTCBBCC----HHHHHHHHHHTTCEEEEECTTTT
T ss_pred EEE----eccCCCCC----cCHHHHHHhhC---CCceEEEEeCCcccccCcCC----HHHHHHHHHHcCCEEEEEhhhcc
Confidence 111 01101110 27899998886 47899999999999999998 99999999999999999999983
Q ss_pred CcccccCcccccCCCCCcEE--EecccccCCccchhhheeCHHHHhhcCCCCCCC--------------------CCCCC
Q 017259 174 LARSGRMLASDWEEVRPDMV--ILGKALGGGVIPVSAVLADKEVMLCIQPGEHGS--------------------TFGGN 231 (374)
Q Consensus 174 ~~~~g~~~~~~~~~~~~d~~--s~sK~~~~G~~~~G~~~~~~~~~~~~~~~~~~~--------------------~~~~~ 231 (374)
. .. .+....+ .+|++ |+||.++ +. ++|++++++++.+.+....... ..+.+
T Consensus 211 ~-~~--~~~~~~~--~~di~~~s~sK~~~-~~-g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (420)
T 1t3i_A 211 P-HY--PLDVQLI--DCDWLVASGHKMCA-PT-GIGFLYGKEEILEAMPPFFGGGEMIAEVFFDHFTTGELPHKFEAGTP 283 (420)
T ss_dssp T-TS--CCCHHHH--TCSEEEEEGGGTTS-CT-TCEEEEECHHHHHHSCCCSCSTTSEEEECSSCEEECCTTGGGCCSSC
T ss_pred C-Cc--cCchhhc--CCCEEEEehhhhcC-CC-ceEEEEEchHHHhhcCceecCCCccccccccccCCCCchhhccCCCc
Confidence 2 11 1111222 35665 5669554 44 5788999999988887543221 12345
Q ss_pred HHHHHHHHH-HHHHHhh---hcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEE-----EEeeeEEEEeccCCCchhHHHH
Q 017259 232 PLASAVAIA-SLDVIRD---EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVR-----GRGLFNAVEFDKTALPVSAYDI 302 (374)
Q Consensus 232 ~~~~~aa~~-al~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-----~~g~~~~~~~~~~~~~~~~~~~ 302 (374)
.+.+.++.. +++.+.+ +++.++.+++.+++.+.|+++ +++....+ ..+.++++.++.. +..++
T Consensus 284 ~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~----~g~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~ 355 (420)
T 1t3i_A 284 AIAEAIALGAAVDYLTDLGMENIHNYEVELTHYLWQGLGQI----PQLRLYGPNPKHGDRAALASFNVAGL----HASDV 355 (420)
T ss_dssp CHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTC----TTEEEESCCGGGSCBCSEEEEEETTB----CHHHH
T ss_pred cHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhC----CCeEEeCCCccccccCCEEEEEECCC----CHHHH
Confidence 566655554 6776654 345666666777777666553 22221111 1377778777642 57789
Q ss_pred HHHHHHCCeEeccC-----------C-CCEEEEecCCCCCHHHHHHHHHHHHHHHhccCCc
Q 017259 303 CLKMKERGILAKPT-----------H-DTIVRLTPPLSISSNELQEGSKALHDVLELDLPK 351 (374)
Q Consensus 303 ~~~l~~~Gi~v~~~-----------~-~~~lRi~~~~~~~~e~i~~~~~~l~~~~~~~~~~ 351 (374)
.+.|.++||.++++ + .+++|++++..++++++++++++|+++++ .+.+
T Consensus 356 ~~~l~~~gi~v~~~~~~~~~~~~~~g~~~~iRis~~~~~~~~~i~~~~~~l~~~~~-~~~~ 415 (420)
T 1t3i_A 356 ATMVDQDGIAIRSGHHCTQPLHRLFDASGSARASLYFYNTKEEIDLFLQSLQATIR-FFSD 415 (420)
T ss_dssp HHHHHTTTEECBCSCTTCHHHHHHTTCCCCEEEECCTTCCHHHHHHHHHHHHHHHH-HTC-
T ss_pred HHHHHHCCeEEeeccccchHHHHhcCCCCeEEEecCCCCCHHHHHHHHHHHHHHHH-HhcC
Confidence 99999999999886 2 67999999888899999999999999998 6643
No 115
>1vjo_A Alanine--glyoxylate aminotransferase; 17130350, ALR1004, STR genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: PLP; 1.70A {Nostoc SP} SCOP: c.67.1.3
Probab=99.96 E-value=2e-27 Score=223.10 Aligned_cols=289 Identities=15% Similarity=0.128 Sum_probs=209.6
Q ss_pred CcHHHHHHHHhcccCCC---eEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCC--cccccccccCCcc
Q 017259 21 DKFPVFAERLTSMFGYD---MVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHG--RTLAAISMSCDNE 95 (374)
Q Consensus 21 ~~~~~l~~~l~~~~~~~---~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg--~~~~~~~~~~~~~ 95 (374)
+.++++++++++++|.+ ++++|+||++|++.+++++ ..+| |+|++.+|+|++ ....+...+....
T Consensus 67 ~~~~~~~~~la~~~g~~~~~~v~~t~g~t~al~~~~~~~-----~~~g-----d~Vl~~~~~~~~~~~~~~~~~~g~~~~ 136 (393)
T 1vjo_A 67 ALMDEIQSLLRYVWQTENPLTIAVSGTGTAAMEATIANA-----VEPG-----DVVLIGVAGYFGNRLVDMAGRYGADVR 136 (393)
T ss_dssp HHHHHHHHHHHHHHTCCCSCEEEESSCHHHHHHHHHHHH-----CCTT-----CEEEEEESSHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHHHHHhCCCCCcEEEEeCchHHHHHHHHHhc-----cCCC-----CEEEEEcCChhHHHHHHHHHHcCCceE
Confidence 56778999999988654 7999999999999999988 4567 999999999988 3332222221111
Q ss_pred ccccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEeccccCCc
Q 017259 96 AIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLA 175 (374)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~~~~ 175 (374)
.. +...+. ..|+++|+++++++ +++++++++++|++|.+.+ +++|.++|++||++||+||+|+ ++
T Consensus 137 ~v----~~~~~~----~~d~~~l~~~l~~~--~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~Dea~~-~g 201 (393)
T 1vjo_A 137 TI----SKPWGE----VFSLEELRTALETH--RPAILALVHAETSTGARQP----LEGVGELCREFGTLLLVDTVTS-LG 201 (393)
T ss_dssp EE----ECCTTC----CCCHHHHHHHHHHH--CCSEEEEESEETTTTEECC----CTTHHHHHHHHTCEEEEECTTT-TT
T ss_pred EE----ecCCCC----CCCHHHHHHHHhhC--CceEEEEeccCCCcceecc----HHHHHHHHHHcCCEEEEECCcc-cc
Confidence 10 110100 13899999999853 5778999999999999987 9999999999999999999998 53
Q ss_pred ccccCcccccCCCCCcEEE--ecccccCCccchhhheeCHHHHhhcCCC-------CC------------CCCC-CCCHH
Q 017259 176 RSGRMLASDWEEVRPDMVI--LGKALGGGVIPVSAVLADKEVMLCIQPG-------EH------------GSTF-GGNPL 233 (374)
Q Consensus 176 ~~g~~~~~~~~~~~~d~~s--~sK~~~~G~~~~G~~~~~~~~~~~~~~~-------~~------------~~~~-~~~~~ 233 (374)
.. . .......+|+++ +||+++++. |+|++++++++.+.+... .. ...+ +.+.+
T Consensus 202 ~~--~--~~~~~~~~di~~~s~sK~l~~~~-~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 276 (393)
T 1vjo_A 202 GV--P--IFLDAWGVDLAYSCSQKGLGCSP-GASPFTMSSRAIEKLQRRRTKVANWYLDMNLLGKYWGSERVYHHTAPIN 276 (393)
T ss_dssp TS--C--CCTTTTTCSEEECCSSSTTCSCS-SCEEEEECHHHHHHHHTCSSCCSCSTTCHHHHHHHHSTTCCCCSCCCHH
T ss_pred Cc--C--CcccccCccEEEEcCcccccCCC-ceEEEEECHHHHHHHhccCCCCCceecCcHhhhhhhccCCCCCCCCCHH
Confidence 22 1 122234567774 559999887 899999999888776321 10 2234 67889
Q ss_pred HHHHHHHHHHHHhh---hcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEE--EeeeEEEEeccCCCchhHHHHHHHHHH
Q 017259 234 ASAVAIASLDVIRD---EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRG--RGLFNAVEFDKTALPVSAYDICLKMKE 308 (374)
Q Consensus 234 ~~~aa~~al~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~--~g~~~~~~~~~~~~~~~~~~~~~~l~~ 308 (374)
+++++.++++.+.+ +++.++++++.+++.+.|+++ .++ +.. ..+ .+.++++.++... +..++.+.|.+
T Consensus 277 ~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~--g~~-~~~-~~~~~~~~~~~~~~~~~~---~~~~~~~~l~~ 349 (393)
T 1vjo_A 277 LYYALREALRLIAQEGLANCWQRHQKNVEYLWERLEDI--GLS-LHV-EKEYRLPTLTTVCIPDGV---DGKAVARRLLN 349 (393)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT--TCC-BSS-CGGGBCSSEEEEECCTTC---CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHc--CCc-ccC-CccccCCcEEEEEcCCCC---CHHHHHHHHHh
Confidence 99999999987644 256778888888888888775 221 221 111 2456677665433 67889999998
Q ss_pred C-CeEeccCC----CCEEEEec-CCCCCHHHHHHHHHHHHHHHh
Q 017259 309 R-GILAKPTH----DTIVRLTP-PLSISSNELQEGSKALHDVLE 346 (374)
Q Consensus 309 ~-Gi~v~~~~----~~~lRi~~-~~~~~~e~i~~~~~~l~~~~~ 346 (374)
+ ||.++++. .+++||++ ++..+++++++++++|+++++
T Consensus 350 ~~gi~v~~g~~~~~~~~iRis~~~~~~~~~~i~~~~~~l~~~l~ 393 (393)
T 1vjo_A 350 EHNIEVGGGLGELAGKVWRVGLMGFNSRKESVDQLIPALEQVLR 393 (393)
T ss_dssp HHCEECEECCGGGTTTEEEEECCGGGCSHHHHHHHHHHHHHHHC
T ss_pred hCCEEEecCccccCCCEEEEeCCccCChHHHHHHHHHHHHHHhC
Confidence 8 99998763 68999994 566688889999999998763
No 116
>3asa_A LL-diaminopimelate aminotransferase; PLP dependent aminotransferase; 2.05A {Chlamydia trachomatis} PDB: 3asb_A*
Probab=99.95 E-value=2.7e-28 Score=229.81 Aligned_cols=305 Identities=12% Similarity=0.105 Sum_probs=204.4
Q ss_pred hHHHHHHHhcccc--CcCC-CCCcHHHHHHHHhcc--cC---CCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEE
Q 017259 2 KALQEQAEKLTLS--SRAF-YNDKFPVFAERLTSM--FG---YDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAII 73 (374)
Q Consensus 2 ~a~~~~~~~~~~~--~~~~-~~~~~~~l~~~l~~~--~~---~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~v 73 (374)
+++.+++++.... ...| +.....++++.++++ .| .+++++++|++++++.++.++ .+| |+|
T Consensus 53 ~a~~~~~~~~~~~~~~~~y~~~~g~~~lr~~la~~l~~g~~~~~~v~~~~G~~~al~~~~~~~------~~g-----d~V 121 (400)
T 3asa_A 53 EAFASSIARLSSPTTCRGYGPDFGLPALRQKLSEDFYRGFVDAKEIFISDGAKVDLFRLLSFF------GPN-----QTV 121 (400)
T ss_dssp HHHHHHHHHHTSSSCCCCCCCTTCCHHHHHHHHHTTSTTSSCGGGEEEESCHHHHHHHHHHHH------CSS-----CEE
T ss_pred HHHHHHHhcccccccccCCCCCCCCHHHHHHHHHHHHcCCCCHHHEEEccChHHHHHHHHHHc------CCC-----CEE
Confidence 4566666553221 1113 345678899999988 45 568999999999999865433 356 999
Q ss_pred EEeccCCCCcccccccccCCccccccCCCCCCCceeccCCC----HHHHHHHHHhcCCcEEEEEEccccCCCCcccCChh
Q 017259 74 VSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGD----ITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDG 149 (374)
Q Consensus 74 i~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d----~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~ 149 (374)
++..|+|++....+...+... +..++.++ ..++++ . ++++++++++++|++|.+. +.+
T Consensus 122 l~~~p~y~~~~~~~~~~g~~~------------~~~~~~~~~~~~~~~l~~----~-~~~~~v~l~~p~nptG~~~-~~~ 183 (400)
T 3asa_A 122 AIQDPSYPAYLDIARLTGAKE------------IIALPCLQENAFFPEFPE----D-THIDILCLCSPNNPTGTVL-NKD 183 (400)
T ss_dssp EEEESCCHHHHHHHHHTTCSE------------EEEEECCGGGTTCCCCCT----T-CCCSEEEEESSCTTTCCCC-CHH
T ss_pred EECCCCcHHHHHHHHHcCCcc------------eEecccchhcCcccChhh----c-cCccEEEEeCCCCCCCCcC-CHH
Confidence 999999988765443332210 11111110 001111 1 3678888888888999776 799
Q ss_pred HHHHHHHHHHhcCCEEEEeccccCCccccc-CcccccCCCCCc----EEEeccccc-CCccchhhheeCHHH-------H
Q 017259 150 YLKAVRDLCSKYNILMIADEIQSGLARSGR-MLASDWEEVRPD----MVILGKALG-GGVIPVSAVLADKEV-------M 216 (374)
Q Consensus 150 ~l~~l~~l~~~~~i~li~Dea~~~~~~~g~-~~~~~~~~~~~d----~~s~sK~~~-~G~~~~G~~~~~~~~-------~ 216 (374)
++++|.++|++||++||+||+|+++.+.+. ......++..++ +.|+||.++ +|+ |+||+++++++ +
T Consensus 184 ~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~Gl-riG~~~~~~~~~~~~~~~~ 262 (400)
T 3asa_A 184 QLRAIVHYAIEHEILILFDAAYSTFISDPSLPKSIFEIPDARFCAIEINSFSKPLGFAGI-RLGWTVIPQELTYADGHFV 262 (400)
T ss_dssp HHHHHHHHHHHTTCEEEEECTTGGGCCCTTSCSSGGGSTTGGGTEEEEEECCGGGTTTTC-CCEEEECCTTCBCTTSCBH
T ss_pred HHHHHHHHHHHcCCEEEEEchhhhhhcCCCCCCchhhCCCCCCceEEEecchhhcCCcch-heeEEeeChhhccchhhhH
Confidence 999999999999999999999998765543 122222221123 459999998 898 99999988876 4
Q ss_pred hhcCCCCCCCCC-CCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEE-eccCC
Q 017259 217 LCIQPGEHGSTF-GGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVE-FDKTA 294 (374)
Q Consensus 217 ~~~~~~~~~~~~-~~~~~~~~aa~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~ 294 (374)
+.+.......++ +.+.+++.++.++++....+++.++++++++++.+.|++. ++.......+.++|+. ++...
T Consensus 263 ~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~L~~~-----g~~~~~~~~~~~~~~~~~~~~~ 337 (400)
T 3asa_A 263 IQDWERFLSTTFNGASIPAQEAGVAGLSILPQLEAIHYYRENSDLLRKALLAT-----GFEVFGGEHAPYLWVKPTQANI 337 (400)
T ss_dssp HHHHHHHHHHHCCCCCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHT-----TCEEEECSSSSEEEEECCCTTC
T ss_pred HHHHHHHhccCccCCChHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHC-----CCeeeCCCCceEEEEeccCCCC
Confidence 443221122234 5789999988888876433466788888888888887764 2221111246788888 65432
Q ss_pred CchhHHHHHHHHHHC-CeEeccCC------CCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 017259 295 LPVSAYDICLKMKER-GILAKPTH------DTIVRLTPPLSISSNELQEGSKALHDVLE 346 (374)
Q Consensus 295 ~~~~~~~~~~~l~~~-Gi~v~~~~------~~~lRi~~~~~~~~e~i~~~~~~l~~~~~ 346 (374)
+..++.+.|+++ ||.+.++. .+++||+ +..+++++++++++|+++++
T Consensus 338 ---~~~~~~~~l~~~~gv~v~~g~~f~~~~~~~iRis--~~~~~e~i~~~l~~l~~~~~ 391 (400)
T 3asa_A 338 ---SDRDLFDFFLREYHIAITPGIGFGRSGSGFVRFS--SLGKREDILAACERLQMAPA 391 (400)
T ss_dssp ---CTTTHHHHHHHHHSEECEEGGGGCGGGTTCEEEE--CCSCHHHHHHHHHHHHC---
T ss_pred ---CHHHHHHHHHHhCCEEEeChhHhCCCCCCEEEEE--eeCCHHHHHHHHHHHHHHHH
Confidence 455788888754 99998752 5789999 56899999999999998887
No 117
>1m32_A 2-aminoethylphosphonate-pyruvate aminotransferase; PLP-dependent aminotransferase fold; HET: PLP; 2.20A {Salmonella typhimurium} SCOP: c.67.1.3
Probab=99.95 E-value=1.1e-26 Score=215.65 Aligned_cols=291 Identities=15% Similarity=0.158 Sum_probs=209.0
Q ss_pred CcHHHHHHHHhcccCC----CeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCccc-c-cccccCCc
Q 017259 21 DKFPVFAERLTSMFGY----DMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTL-A-AISMSCDN 94 (374)
Q Consensus 21 ~~~~~l~~~l~~~~~~----~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~-~-~~~~~~~~ 94 (374)
+...+++++++++++. +++++++||++|++.+++++ ..+| |+|++.++.||+... . +...+...
T Consensus 37 ~~~~~l~~~la~~~g~~~~~~~v~~~~g~t~a~~~~~~~~-----~~~g-----d~vi~~~~~~~~~~~~~~~~~~g~~~ 106 (366)
T 1m32_A 37 GVVEQIRQQLTALATASEGYTSVLLQGSGSYAVEAVLGSA-----LGPQ-----DKVLIVSNGAYGARMVEMAGLMGIAH 106 (366)
T ss_dssp TTHHHHHHHHHHHHCSSSSEEEEEEESCHHHHHHHHHHHS-----CCTT-----CCEEEEESSHHHHHHHHHHHHHTCCE
T ss_pred HHHHHHHHHHHHHhCCCCcCcEEEEecChHHHHHHHHHHh-----cCCC-----CeEEEEeCCCccHHHHHHHHHhCCce
Confidence 6788999999998873 26999999999999999988 4556 888888766666422 1 11111111
Q ss_pred cccccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEeccccCC
Q 017259 95 EAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGL 174 (374)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~~~ 174 (374)
... +... ....|+++|+++++++ ++++++++.+++|++|.+.+ +++|.++|++||++||+||+|+..
T Consensus 107 ~~v----~~~~----~~~~d~~~l~~~l~~~-~~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~Dea~~~~ 173 (366)
T 1m32_A 107 HAY----DCGE----VARPDVQAIDAILNAD-PTISHIAMVHSETTTGMLNP----IDEVGALAHRYGKTYIVDAMSSFG 173 (366)
T ss_dssp EEE----ECCT----TSCCCHHHHHHHHHHC-TTCCEEEEESEETTTTEECC----HHHHHHHHHHHTCEEEEECTTTTT
T ss_pred EEE----eCCC----CCCCCHHHHHHHHhcC-CCeEEEEEecccCCcceecC----HHHHHHHHHHcCCEEEEECCcccc
Confidence 110 1100 0113899999999864 34778888888889999998 999999999999999999999732
Q ss_pred cccccCcccccCCCCCcEE--EecccccCCccchhhheeCHHHHhhcCCCCCC------------------CCCCCCHHH
Q 017259 175 ARSGRMLASDWEEVRPDMV--ILGKALGGGVIPVSAVLADKEVMLCIQPGEHG------------------STFGGNPLA 234 (374)
Q Consensus 175 ~~~g~~~~~~~~~~~~d~~--s~sK~~~~G~~~~G~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~ 234 (374)
.. .+.. ....+|++ |+||+++++. ++|++++++++.+.+...... ..++.+.++
T Consensus 174 -~~--~~~~--~~~~~di~~~s~~K~~~~~~-g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (366)
T 1m32_A 174 -GI--PMDI--AALHIDYLISSANKCIQGVP-GFAFVIAREQKLAACKGHSRSLSLDLYAQWRCMEDNHGKWRFTSPTHT 247 (366)
T ss_dssp -TS--CCCT--TTTTCSEEEEESSSTTCCCS-SEEEEEEEHHHHTTCTTCCSCSTTCHHHHHHHHHHTTTCCSSCCCHHH
T ss_pred -Cc--Cccc--cccCccEEEecCcccccCCC-ceEEEEECHHHHHhhcCCCCCccccHHHHHhhhcccCCCCCCCCCHHH
Confidence 21 1111 12345665 6789998776 789999999988877643111 135778888
Q ss_pred HHHHHHHHHHHhhh----cHHHHHHHHHHHHHHHHHHHHHhCCCceeeE-EEEeeeEEEEecc--CCCchhHHHHHHHHH
Q 017259 235 SAVAIASLDVIRDE----KLAERSAHLGEELRQHLFKIQQQFPNYVKEV-RGRGLFNAVEFDK--TALPVSAYDICLKMK 307 (374)
Q Consensus 235 ~~aa~~al~~~~~~----~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~g~~~~~~~~~--~~~~~~~~~~~~~l~ 307 (374)
++++.++++.+.+. ++.++++++.+++.+.|+++ .+ ...... ...+.++++.+++ .. +..++.+.|.
T Consensus 248 ~~a~~~al~~~~~~g~~~~~~~~~~~~~~~l~~~L~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~ 321 (366)
T 1m32_A 248 VLAFAQALKELAKEGGVAARHQRYQQNQRSLVAGMRAL--GF-NTLLDDELHSPIITAFYSPEDPQY---RFSEFYRRLK 321 (366)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHT--TC-CBSSCGGGBCSSEEEEECCCCTTC---CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHhHHHHHHHHHHHHHHHHHHHC--CC-eeccCchhcCceEEEEEcCccCCC---CHHHHHHHHH
Confidence 88888888876543 36677777888888888765 22 121110 1245578887764 22 6789999999
Q ss_pred HCCeEeccC---CCCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 017259 308 ERGILAKPT---HDTIVRLTPPLSISSNELQEGSKALHDVLE 346 (374)
Q Consensus 308 ~~Gi~v~~~---~~~~lRi~~~~~~~~e~i~~~~~~l~~~~~ 346 (374)
++||.++++ ..+++|++++...+++++++++++|+++++
T Consensus 322 ~~gi~v~~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~ 363 (366)
T 1m32_A 322 EQGFVIYPGKVSQSDCFRIGNIGEVYAADITALLTAIRTAMY 363 (366)
T ss_dssp HTTEECEECCCSSSCEEEEECCSSCCHHHHHHHHHHHHHHCT
T ss_pred HCCEEEECCcCCCCCEEEEecCCCCCHHHHHHHHHHHHHHHH
Confidence 999999886 368999999988899999999999998876
No 118
>3f0h_A Aminotransferase; RER070207000802, structural genomics, JOIN for structural genomics, JCSG; HET: MSE LLP; 1.70A {Eubacterium rectale}
Probab=99.95 E-value=3.5e-27 Score=220.09 Aligned_cols=288 Identities=14% Similarity=0.115 Sum_probs=194.8
Q ss_pred CcHHHHHHHHhcccCCC---eE-EecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccc-cccCCcc
Q 017259 21 DKFPVFAERLTSMFGYD---MV-LPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAI-SMSCDNE 95 (374)
Q Consensus 21 ~~~~~l~~~l~~~~~~~---~~-~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~-~~~~~~~ 95 (374)
+..++++++++++++.+ ++ ++++||++|++.+++.+ .++| |+|++..++|++...... ...+
T Consensus 52 ~~~~~~~~~la~~~g~~~~~~~i~~~~ggt~al~~~~~~~-----~~~g-----d~vi~~~~~~~~~~~~~~~~~~g--- 118 (376)
T 3f0h_A 52 STMLENEKFMLEYAKAPEGSKAVFMTCSSTGSMEAVVMNC-----FTKK-----DKVLVIDGGSFGHRFVQLCEIHE--- 118 (376)
T ss_dssp HHHHHHHHHHHHHHTCCTTCEEEEESSCHHHHHHHHHHHH-----CCTT-----CCEEEEESSHHHHHHHHHHHHTT---
T ss_pred HHHHHHHHHHHHHhCCCCCceEEEEcCChhHHHHHHHHhc-----cCCC-----CeEEEEeCChhhHHHHHHHHHcC---
Confidence 55677889999987654 44 55899999999999988 5667 999999988877542211 1111
Q ss_pred ccccCCCCCCCceeccC-----CCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEecc
Q 017259 96 AIRGFGPLLPGHLKVDF-----GDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEI 170 (374)
Q Consensus 96 ~~~~~~~~~~~~~~~~~-----~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea 170 (374)
..+..++. .|+++++++++ ++++++++++++|++|.+.+ +++|.++|++||+++|+|++
T Consensus 119 ---------~~~~~v~~~~~~~~d~~~l~~~~~---~~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~D~~ 182 (376)
T 3f0h_A 119 ---------IPYVALKLEHGKKLTKEKLYEYDN---QNFTGLLVNVDETSTAVLYD----TMMIGEFCKKNNMFFVCDCV 182 (376)
T ss_dssp ---------CCEEEEECCTTCCCCHHHHHTTTT---SCCCEEEEESEETTTTEECC----HHHHHHHHHHTTCEEEEECT
T ss_pred ---------CceEEEeCCCCCCCCHHHHHHhhc---cCceEEEEecccCCcceecC----HHHHHHHHHHcCCEEEEEcC
Confidence 11111111 27888888664 57899999999999999998 99999999999999999999
Q ss_pred ccCCcccccCcccccCCCCCcEEEecccccCCccchhhheeCHHHHhhcCCCCC-----------------CCCCCCCHH
Q 017259 171 QSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEH-----------------GSTFGGNPL 233 (374)
Q Consensus 171 ~~~~~~~g~~~~~~~~~~~~d~~s~sK~~~~G~~~~G~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~ 233 (374)
|+.... .+....++.+..+.+++|+++++. ++|+++.++++.+.+..... ...+..+..
T Consensus 183 ~~~~~~---~~~~~~~~~d~~~~s~~K~l~~~~-G~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (376)
T 3f0h_A 183 SAFLAD---PFNMNECGADVMITGSQKVLACPP-GISVIVLAPRGVERVEKSKVRTMYFDLKDALKNQERGQTPFTPAVG 258 (376)
T ss_dssp TTTTTS---CCCHHHHTCSEEEEETTTTTCCCS-SCEEEEECHHHHHHHHTCCCCCSTTCHHHHHHHHTTTCCSSCCCHH
T ss_pred ccccCc---cccccccCccEEEecCcccccCCC-ceEEEEECHHHHHHhhcCCCCceeecHHHHHhhcccCCCCCCCcHH
Confidence 985432 122222333333457779998766 77888899988877754211 123455666
Q ss_pred HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHhCCCceee-EEEEeeeEEEEeccCCCchhHHHHHHHHHHC-Ce
Q 017259 234 ASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKE-VRGRGLFNAVEFDKTALPVSAYDICLKMKER-GI 311 (374)
Q Consensus 234 ~~~aa~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~-Gi 311 (374)
+++++.++++.+.+++..+.+.++...+++.+.+....+ ++... ....+.++.+. +... +..++.+.|.++ ||
T Consensus 259 ~~~a~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-~~~~~~~~~~~~~~~~~-~~~~---~~~~l~~~l~~~~gi 333 (376)
T 3f0h_A 259 ILLQINERLKEIKKHGGADAEVARIASQAADFRAKIKDL-PFELVSESPANGVTSVH-PTTA---NAYDIFLKLKDEYGI 333 (376)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTTS-SEEECCSSBBTTEEEEE-ESSS---CHHHHHHHHHHHSSE
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHc-CCccCccccCceEEEEe-CCCC---CHHHHHHHHHHhCCE
Confidence 667777788776554223333344444444443333222 22111 11123333333 3222 678999999998 99
Q ss_pred EeccCC----CCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 017259 312 LAKPTH----DTIVRLTPPLSISSNELQEGSKALHDVLE 346 (374)
Q Consensus 312 ~v~~~~----~~~lRi~~~~~~~~e~i~~~~~~l~~~~~ 346 (374)
.++++. .+++|++++..++++++++++++|+++++
T Consensus 334 ~v~~g~~~~~~~~lRis~~~~~t~e~i~~~~~~l~~~l~ 372 (376)
T 3f0h_A 334 WICPNGGEMKDTIFRVGHIGALTHEDNTTLVNAFKDLQK 372 (376)
T ss_dssp ECEECCGGGTTTCEEEECCSSCCHHHHHHHHHHHHHHHH
T ss_pred EEecCccccCCCEEEEecCCCCCHHHHHHHHHHHHHHHH
Confidence 998753 58999999989999999999999999987
No 119
>2q7w_A Aspartate aminotransferase; mechanism-based inhibitor, PLP, sadta, PH dependence; HET: KST PSZ PMP GOL; 1.40A {Escherichia coli} SCOP: c.67.1.1 PDB: 2qa3_A* 2qb2_A* 2qb3_A* 2qbt_A* 3qn6_A* 3pa9_A* 1aaw_A* 1amq_A* 1ams_A* 1arg_A* 1amr_A* 1art_A* 1asa_A* 1asd_A* 1ase_A* 1asl_A* 1asm_A* 1asn_A* 1c9c_A* 1cq6_A* ...
Probab=99.95 E-value=2.5e-28 Score=229.52 Aligned_cols=290 Identities=12% Similarity=0.085 Sum_probs=193.7
Q ss_pred CCCcHHHHHHHHhccc---C-----CCeEEe--cCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccc
Q 017259 19 YNDKFPVFAERLTSMF---G-----YDMVLP--MNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAI 88 (374)
Q Consensus 19 ~~~~~~~l~~~l~~~~---~-----~~~~~~--~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~ 88 (374)
+.+...++++.+++++ + .+++++ |+||++|++.+++++.. ..+| |+|++..|+|+++...+.
T Consensus 67 ~~~g~~~lr~~la~~~~~~~~~~~~~~~v~~~~~~g~~~a~~~~~~~~~~---~~~g-----d~Vl~~~p~y~~~~~~~~ 138 (396)
T 2q7w_A 67 GIDGIPEFGRCTQELLFGKGSALINDKRARTAQTPGGTGALRVAADFLAK---NTSV-----KRVWVSNPSWPNHKSVFN 138 (396)
T ss_dssp CTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEESHHHHHHHHHHHHHHH---HSCC-----CEEEEEESCCTHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHhcCCCCccccccEEEEecccchhhHHHHHHHHHH---hCCC-----CEEEEcCCCchhHHHHHH
Confidence 3455667777777765 2 578988 99999999999987753 2366 999999999998776655
Q ss_pred cccCCccccccCCCCCCCceeccC---C----CHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhc
Q 017259 89 SMSCDNEAIRGFGPLLPGHLKVDF---G----DITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKY 161 (374)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~---~----d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~ 161 (374)
..+.. +..++. + |++++++++++++++++++++++++|++|.+. +.+++++|.++|++|
T Consensus 139 ~~g~~-------------~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~v~~~~p~nptG~~~-~~~~l~~l~~~~~~~ 204 (396)
T 2q7w_A 139 SAGLE-------------VREYAYYDAENHTLDFDALINSLNEAQAGDVVLFHGCCHNPTGIDP-TLEQWQTLAQLSVEK 204 (396)
T ss_dssp HTTCE-------------EEEEECEETTTTEECHHHHHHHHTTCCTTCEEEEECSSCTTTCCCC-CHHHHHHHHHHHHHH
T ss_pred HcCCc-------------eEEEecccCCCCCcCHHHHHHHHHhCCCCCEEEEeCCCCCCCCCCC-CHHHHHHHHHHHHHC
Confidence 44322 122222 1 79999999986544578888888999999766 799999999999999
Q ss_pred CCEEEEeccccCCcccc--cCcccccCC-CCCc---EEEeccccc-CCccchhhhee---CH----HHHhhcCCCCCCCC
Q 017259 162 NILMIADEIQSGLARSG--RMLASDWEE-VRPD---MVILGKALG-GGVIPVSAVLA---DK----EVMLCIQPGEHGST 227 (374)
Q Consensus 162 ~i~li~Dea~~~~~~~g--~~~~~~~~~-~~~d---~~s~sK~~~-~G~~~~G~~~~---~~----~~~~~~~~~~~~~~ 227 (374)
|++||+||+|+++.+.+ .......+. ..++ +.|+||.++ +|+ |+||+++ ++ ++.+.+........
T Consensus 205 ~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~-riG~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (396)
T 2q7w_A 205 GWLPLFDFAYQGFARGLEEDAEGLRAFAAMHKELIVASSYSXNFGLYNE-RVGACTLVAADSETVDRAFSQMKAAIRANY 283 (396)
T ss_dssp TCEEEEEESCTTSSSCHHHHTHHHHHHHHHCSCEEEEEECTTTTTCGGG-CCEEEEEECSSHHHHHHHHHHHHHHHHTTT
T ss_pred CCEEEEecccccccCCccchhHHHHHHHhcCCcEEEEEecccccccccc-ccceEEEEcCCHHHHHHHHHHHHHHHhhcc
Confidence 99999999999886543 222222111 1122 448999999 799 9999886 55 34444432111222
Q ss_pred CCCCHHHHHHHHHHHHHH------hh--hcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCchhH
Q 017259 228 FGGNPLASAVAIASLDVI------RD--EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSA 299 (374)
Q Consensus 228 ~~~~~~~~~aa~~al~~~------~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 299 (374)
...+++++.++.++++.. .+ ++..++++++++++.+.|++..... .+....+..+.++|+.+ ..
T Consensus 284 ~~~~~~~~~a~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~-~~~~~~~~~~~~~~~~~-------~~ 355 (396)
T 2q7w_A 284 SNPPAHGASVVATILSNDALRAIWEQELTDMRQRIQRMRQLFVNTLQEKGANR-DFSFIIKQNGMFSFSGL-------TK 355 (396)
T ss_dssp SSCCHHHHHHHHHHHTSHHHHHHHHHHHHHC-CHHHHHHHHHHHHHHHTTCCS-CCTHHHHCCSSEEECCC-------CH
T ss_pred CCCCcHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC-CcceecCCCceEEEecC-------CH
Confidence 345888888888887543 01 1334555566666666665542100 01111122344545432 23
Q ss_pred HHHHHHHHHCCeEeccCCCCEEEEecCCCCCHHHHHHHHHHHHHH
Q 017259 300 YDICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDV 344 (374)
Q Consensus 300 ~~~~~~l~~~Gi~v~~~~~~~lRi~~~~~~~~e~i~~~~~~l~~~ 344 (374)
..+.+.|.++||.+.++ +||+++.. +++++++++++|+++
T Consensus 356 ~~~~~~l~~~gv~v~~~----~Ris~~~~-~~e~i~~~~~~l~~~ 395 (396)
T 2q7w_A 356 EQVLRLREEFGVYAVAS----GRVNVAGM-TPDNMAPLCEAIVAV 395 (396)
T ss_dssp HHHHHHHHHHCEECCTT----CEEEGGGC-CTTTHHHHHHHHHHH
T ss_pred HHHHHHHHhcCeeecCC----ceEEEeec-CHHHHHHHHHHHHhc
Confidence 45666677889999875 69998743 899999999999875
No 120
>1ajs_A Aspartate aminotransferase; PIG, in the presence of ligand 2-methylaspartate; HET: LLP PLA; 1.60A {Sus scrofa} SCOP: c.67.1.1 PDB: 1ajr_A* 3ii0_A* 1aat_A 2cst_A*
Probab=99.95 E-value=8.2e-28 Score=227.31 Aligned_cols=304 Identities=11% Similarity=0.105 Sum_probs=200.5
Q ss_pred CCCcHHHHHHHHhccc-C-------CCeEEe--cCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccc
Q 017259 19 YNDKFPVFAERLTSMF-G-------YDMVLP--MNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAI 88 (374)
Q Consensus 19 ~~~~~~~l~~~l~~~~-~-------~~~~~~--~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~ 88 (374)
+.....++++.+++++ + .+++++ |+||++|++.+++++.. ..+|.+..+|+|++..|+|+++...+.
T Consensus 72 ~~~g~~~lr~~la~~~~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~---~~~g~~~~~d~Vl~~~p~y~~~~~~~~ 148 (412)
T 1ajs_A 72 PILGLAEFRTCASRLALGDDSPALQEKRVGGVQSLGGTGALRIGAEFLAR---WYNGTNNKDTPVYVSSPTWENHNGVFT 148 (412)
T ss_dssp CTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHHHHHH---HSSSSSCCCSCEEEEESCCTHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHhcCCCCccCCCcEEEEECCCcHHHHHHHHHHHHH---hCcCcCCCCCeEEEcCCCcHHHHHHHH
Confidence 3455677777777766 3 478999 99999999999875532 122211112789999999998766555
Q ss_pred cccCC-ccccccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEE
Q 017259 89 SMSCD-NEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIA 167 (374)
Q Consensus 89 ~~~~~-~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~ 167 (374)
..+.. ........+ .+.. .|++++++++++++++++++++++++|++|.+. +.+++++|.++|++||++||+
T Consensus 149 ~~g~~~~~~~~~~~~--~~~~----~d~~~l~~~l~~~~~~~~~v~~~~p~nptG~~~-~~~~l~~l~~~~~~~~~~li~ 221 (412)
T 1ajs_A 149 TAGFKDIRSYRYWDT--EKRG----LDLQGFLSDLENAPEFSIFVLHACAHNPTGTDP-TPEQWKQIASVMKRRFLFPFF 221 (412)
T ss_dssp HTTCSCEEEEECEET--TTTE----ECHHHHHHHHHHSCTTCEEEEESSSCTTTCCCC-CHHHHHHHHHHHHHHTCEEEE
T ss_pred HcCCceeEEEeeecC--CCCc----cCHHHHHHHHHhCCCCcEEEEECCCCCCCCCCC-CHHHHHHHHHHHHHCCCEEEE
Confidence 44332 111100000 0011 179999999987555788888888899999765 899999999999999999999
Q ss_pred eccccCCcccc---cCcccccC-CCCCc---EEEecccccC-Cccchhhhee---CHH----HHhhcCCCCCCCCCC-CC
Q 017259 168 DEIQSGLARSG---RMLASDWE-EVRPD---MVILGKALGG-GVIPVSAVLA---DKE----VMLCIQPGEHGSTFG-GN 231 (374)
Q Consensus 168 Dea~~~~~~~g---~~~~~~~~-~~~~d---~~s~sK~~~~-G~~~~G~~~~---~~~----~~~~~~~~~~~~~~~-~~ 231 (374)
||+|+++++.| .......+ ...++ +.|+||.+++ |+ |+||+++ +++ +.+.+... ...++. .+
T Consensus 222 De~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~-riG~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 299 (412)
T 1ajs_A 222 DSAYQGFASGNLEKDAWAIRYFVSEGFELFCAQSFSKNFGLYNE-RVGNLTVVAKEPDSILRVLSQMQKI-VRVTWSNPP 299 (412)
T ss_dssp EESCTTTTTSCHHHHTHHHHHHHHTTCCEEEEEECTTTSCCGGG-CEEEEEEECSSHHHHHHHHHHHHHH-HHTTTSSCC
T ss_pred EcccccccCCcccccchHHHHHhccCCcEEEEEecccccCCCCc-ceEEEEEecCCHHHHHHHHHHHHHH-HhcccCCCC
Confidence 99999887654 32222211 11222 4589999997 99 9999998 776 33333321 223444 58
Q ss_pred HHHHHHHHHHHHHHh--------hhcHHHHHHHHHHHHHHHHHHHHHhCC-CceeeEEEEeeeEEEEeccCCCchhHHHH
Q 017259 232 PLASAVAIASLDVIR--------DEKLAERSAHLGEELRQHLFKIQQQFP-NYVKEVRGRGLFNAVEFDKTALPVSAYDI 302 (374)
Q Consensus 232 ~~~~~aa~~al~~~~--------~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 302 (374)
++++.++.++++... .++..++++++++++.+.|+++.. | .+....+..+.+.|+.+ ....+
T Consensus 300 ~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~--~~~~~~~~~~~~~~~~~~~-------~~~~~ 370 (412)
T 1ajs_A 300 AQGARIVARTLSDPELFHEWTGNVKTMADRILSMRSELRARLEALKT--PGTWNHITDQIGMFSFTGL-------NPKQV 370 (412)
T ss_dssp SHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC--SSCCHHHHHCCSSEEECCC-------CHHHH
T ss_pred hHHHHHHHHHHcCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC--CCCeeEEcCCCceEEEeCC-------CHHHH
Confidence 889998888887542 124556666667777776665420 0 01111122344444322 23445
Q ss_pred HHHHHHCCeEeccCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhccC
Q 017259 303 CLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVLELDL 349 (374)
Q Consensus 303 ~~~l~~~Gi~v~~~~~~~lRi~~~~~~~~e~i~~~~~~l~~~~~~~~ 349 (374)
...+.++||.+.++ +||+++. .+++++++++++|+++++ ++
T Consensus 371 ~~~l~~~gv~v~~~----~Ris~~~-~~~~~i~~~~~~l~~~l~-~~ 411 (412)
T 1ajs_A 371 EYLINQKHIYLLPS----GRINMCG-LTTKNLDYVATSIHEAVT-KI 411 (412)
T ss_dssp HHHHHTTCEECCTT----SEEEGGG-CCTTTHHHHHHHHHHHHH-HC
T ss_pred HHHHHhCCEEecCC----cEEEeee-CCHHHHHHHHHHHHHHHH-hc
Confidence 55566789999975 5999763 489999999999999987 54
No 121
>3t18_A Aminotransferase class I and II; PSI-biology, MCSG, midwest center for structural genomics, P 5'-phosphate binding; HET: PLP; 2.86A {Anaerococcus prevotii} PDB: 4emy_A*
Probab=99.95 E-value=2.9e-27 Score=223.60 Aligned_cols=291 Identities=12% Similarity=0.123 Sum_probs=197.2
Q ss_pred CCcHHHHHHHHhcccCCC---eEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccCCccc
Q 017259 20 NDKFPVFAERLTSMFGYD---MVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEA 96 (374)
Q Consensus 20 ~~~~~~l~~~l~~~~~~~---~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~ 96 (374)
.++++.+++++....+.+ ++++|+||++|++.+++.+ .++| |+|++..|+|+++.......+.....
T Consensus 82 ~~lr~~la~~~~~~~~~~~~~~i~~t~g~~~al~~~~~~~-----~~~g-----d~Vl~~~p~~~~~~~~~~~~g~~~~~ 151 (413)
T 3t18_A 82 KDYRKIVIDTLFGPYKPEGYISAIATPGGTGAIRSAIFSY-----LDEG-----DPLICHDYYWAPYRKICEEFGRNFKT 151 (413)
T ss_dssp HHHHHHHHHHHHGGGCCSSEEEEEEESHHHHHHHHHHHHH-----CCSS-----CEEEEESSCCTHHHHHHHHHTCEEEE
T ss_pred HHHHHHHHHHHhcccCccccCcEEEcCccHHHHHHHHHHh-----cCCC-----CEEEECCCCcccHHHHHHHhCCeEEE
Confidence 344555666665555667 9999999999999999988 5677 99999999998776655544432221
Q ss_pred cccCCCCC-CCceeccCCCHHHHHHHHHhc--CCcEEEEEEccc-cCCCCcccCChhHHHHHHHHHH------hcCCEEE
Q 017259 97 IRGFGPLL-PGHLKVDFGDITALEKIFKES--GDQIAGFLFEPI-QGEAGVIIPPDGYLKAVRDLCS------KYNILMI 166 (374)
Q Consensus 97 ~~~~~~~~-~~~~~~~~~d~~~le~~l~~~--~~~~~~vi~~~~-~~~~g~~~~~~~~l~~l~~l~~------~~~i~li 166 (374)
. +.. .+.. .|+++|+++++++ ++..++++++++ +|++|.+. +.+.+++|+++|+ +||++||
T Consensus 152 ~----~~~~~~~~----~d~~~l~~~l~~~~~~~~~~~vi~~~p~~NPtG~~~-~~~~l~~l~~~~~~~~~~~~~~~~li 222 (413)
T 3t18_A 152 F----EFFTDDFA----FNIDVYKEAIDEGIRDSDRIASLINSPGNNPTGYSL-SDEEWDEVITFLKEKAEDKDKKITLI 222 (413)
T ss_dssp E----CCBCTTSS----BCHHHHHHHHHHHHHHCSEEEEEEECSSCTTTCCCC-CHHHHHHHHHHHHHHTTSTTCEEEEE
T ss_pred e----eccCCCCC----cCHHHHHHHHHHHhhcCCCEEEEEeCCCCCCCCCCC-CHHHHHHHHHHHHHHhhccCCcEEEE
Confidence 1 110 1101 1799999998752 123347777776 88899777 7888999999999 9999999
Q ss_pred EeccccCCcccccCc---ccccCCCCCcE--E---Eeccccc-CCccchhhhee---CHHHHhhcCCCCCC----CCCCC
Q 017259 167 ADEIQSGLARSGRML---ASDWEEVRPDM--V---ILGKALG-GGVIPVSAVLA---DKEVMLCIQPGEHG----STFGG 230 (374)
Q Consensus 167 ~Dea~~~~~~~g~~~---~~~~~~~~~d~--~---s~sK~~~-~G~~~~G~~~~---~~~~~~~~~~~~~~----~~~~~ 230 (374)
+||+|.++++.+... .....+..++. + ||||.++ +|+ |+||+++ ++++.+.+...... .....
T Consensus 223 ~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~~~~G~-riG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (413)
T 3t18_A 223 VDVAYLEFAGDGDQQRKFFEKFSNLPRNLFVVVAFSMSKSHTAYGL-RSGAAVGISSSKEIIEEFEASLAHSARCNWSNG 301 (413)
T ss_dssp EECTTGGGSSSSSTTTGGGGGGTTCCTTEEEEEEEEHHHHTTCGGG-CCEEEEEEESCHHHHHHHHHHHHHHHHHHTSSC
T ss_pred EecccccccCChhhHHHHHHHHhhcCCCeeEEEEEecCccCCCcCc-CcEEEEEecCCHHHHHHHHHHHHHhhhccccCC
Confidence 999999887766421 12223344442 2 8999999 799 9999998 88888877643211 12346
Q ss_pred CHHHHHHHHHHHHHHh-----h--hcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCchhHHHHH
Q 017259 231 NPLASAVAIASLDVIR-----D--EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDIC 303 (374)
Q Consensus 231 ~~~~~~aa~~al~~~~-----~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 303 (374)
+.+++.++.++++... + +.+.++++++.+.+.+.|++.. +.......+.++|+.+. +..+++
T Consensus 302 ~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g-----~~~~~~~~~~~~~~~~~------~~~~~~ 370 (413)
T 3t18_A 302 THAAQNILIELERAENKKIYEQELVDLRNMLKSRADVFVTAAKENK-----LTMIPYFGGFFTFIPTD------KAFDIV 370 (413)
T ss_dssp CHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-----CCCBCCCSSSCEEEECS------CHHHHH
T ss_pred ChHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-----CCccCCCceEEEEeCCC------CHHHHH
Confidence 8888888877765421 1 1344555666666666665541 21112223445555442 578899
Q ss_pred HHHHHCCeEeccCCCCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 017259 304 LKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVLE 346 (374)
Q Consensus 304 ~~l~~~Gi~v~~~~~~~lRi~~~~~~~~e~i~~~~~~l~~~~~ 346 (374)
+.|.++||.+.++ ++++||+++.. +++++ +++|.++++
T Consensus 371 ~~l~~~gv~v~~g-~~~iRis~~~~-~~~~~---l~~l~~~l~ 408 (413)
T 3t18_A 371 KDLEKENIFTIPS-AKGIRVAICGV-GEEKI---PKLVQRLAF 408 (413)
T ss_dssp HHHHHTTEECEEC-SSEEEECTTTS-CGGGH---HHHHHHHHH
T ss_pred HHHHhCCEEEecC-CCceEEEEeeC-CHHHH---HHHHHHHHH
Confidence 9999999999998 78999997743 44444 777777776
No 122
>3fkd_A L-threonine-O-3-phosphate decarboxylase; structural genomic, , structural genomics, PSI-2, protein structure initiative; 2.50A {Porphyromonas gingivalis}
Probab=99.95 E-value=1.2e-26 Score=214.48 Aligned_cols=280 Identities=14% Similarity=0.066 Sum_probs=197.3
Q ss_pred CCCCcHHHHHHHHhcccCC--CeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccCCcc
Q 017259 18 FYNDKFPVFAERLTSMFGY--DMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNE 95 (374)
Q Consensus 18 ~~~~~~~~l~~~l~~~~~~--~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~ 95 (374)
|+.+...+++++++++++. +++++|+|++++++.+++++ . | |+|++..|+|++....+...+.
T Consensus 47 y~~~~~~~lr~~la~~~~~~~~~i~~t~g~~~al~~~~~~l-----~--g-----d~Vi~~~p~~~~~~~~~~~~g~--- 111 (350)
T 3fkd_A 47 YPEPDAGTLRQMLAKRNSVDNNAILVTNGPTAAFYQIAQAF-----R--G-----SRSLIAIPSFAEYEDACRMYEH--- 111 (350)
T ss_dssp CCCTTCHHHHHHHHHHTTCCGGGEEEESHHHHHHHHHHHHT-----T--T-----CEEEEEESCCHHHHHHHHHTTC---
T ss_pred CCCCcHHHHHHHHHHHhCcCHHHEEEcCCHHHHHHHHHHHH-----C--C-----CEEEEeCCCcHHHHHHHHHcCC---
Confidence 4455558899999998865 48999999999999999877 3 6 9999999999887655444332
Q ss_pred ccccCCCCCCCceeccC-CCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEeccccCC
Q 017259 96 AIRGFGPLLPGHLKVDF-GDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGL 174 (374)
Q Consensus 96 ~~~~~~~~~~~~~~~~~-~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~~~ 174 (374)
.+..++. ++.+.+.. ++++++++++++|++|.+.+ .+.+++|+++|++ .+||+||+|+++
T Consensus 112 ----------~~~~v~~~~~~~~~~~------~~~~~v~i~~p~nptG~~~~-~~~l~~l~~~~~~--~~li~Dea~~~~ 172 (350)
T 3fkd_A 112 ----------EVCFYPSNEDIGEADF------SNMDFCWLCNPNNPDGRLLQ-RTEILRLLNDHPD--TTFVLDQSYVSF 172 (350)
T ss_dssp ----------EEEEEETTSCGGGSCC------TTCSEEEEESSCTTTCCCCC-HHHHHHHHHHCTT--SEEEEECTTTTS
T ss_pred ----------eEEEEecCCccccCcc------CCCCEEEEeCCCCCcCCCCC-HHHHHHHHHhCCC--CEEEEECchhhh
Confidence 2233333 22111110 46788888889999998885 4445555555544 499999999987
Q ss_pred cccccCcccc--cCCCCCcEEEeccccc-CCccchhhheeCHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHhh-hcH
Q 017259 175 ARSGRMLASD--WEEVRPDMVILGKALG-GGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRD-EKL 250 (374)
Q Consensus 175 ~~~g~~~~~~--~~~~~~d~~s~sK~~~-~G~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~al~~~~~-~~~ 250 (374)
.+.+...... ..+....+.|+||.++ +|+ |+||+++++++.+.+.... .+++.+++++.++.++++.... .+.
T Consensus 173 ~~~~~~~~~~~~~~~~~i~~~S~sK~~~~~G~-r~G~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~ 249 (350)
T 3fkd_A 173 TTEEVIRPADIKGRKNLVMVYSFSHAYGIPGL-RIGYIVANKDFMKRVAAFS--TPWAVNALAIEAAKFILIHPAQFTLP 249 (350)
T ss_dssp CSSCCCCGGGGTTCSSEEEEEESHHHHSCGGG-CCEEEECCHHHHHHHHTTC--CTTCSCHHHHHHHHHHHHCTTTTCCC
T ss_pred ccCcchhhHHhhcCCCEEEEecCchhccCcch-heEeEEeCHHHHHHHHHhC--CCCCCCHHHHHHHHHHHhCHHHHHHH
Confidence 6655432211 1111223448999999 788 9999999999988887543 4577899999999988875431 122
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCchhHHHHHHHHHH-CCeEeccCC------CCEEEE
Q 017259 251 AERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKE-RGILAKPTH------DTIVRL 323 (374)
Q Consensus 251 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~-~Gi~v~~~~------~~~lRi 323 (374)
.++..++.+++.+.|+++ |+ +...++.+.++++.++.. +..++.+.|.+ +||.++++. .+++||
T Consensus 250 ~~~~~~~~~~l~~~L~~~----~~-~~~~~~~~~~~~~~~~~~----~~~~l~~~L~~~~gi~v~~g~~f~~~~~~~iRi 320 (350)
T 3fkd_A 250 IRKWQRNTVDFITALNRL----DG-VEVHPSGTTFFLLRLKKG----TAAELKKYMLEEYNMLIRDASNFRGLDESYVRI 320 (350)
T ss_dssp HHHHHHHHHHHHHHHHHS----TT-EEECCCSSSEEEEEESSS----CHHHHHHHHHHTTCEECEECTTSTTCCTTEEEE
T ss_pred HHHHHHHHHHHHHHHhcC----CC-cEECCCCCcEEEEECCCC----CHHHHHHHHHHHCCEEEEeCccCCCCCCCEEEE
Confidence 233335566666666543 32 223445677888888754 57899999999 899998763 689999
Q ss_pred ecCCCCCHHHHHHHHHHHHHHHh
Q 017259 324 TPPLSISSNELQEGSKALHDVLE 346 (374)
Q Consensus 324 ~~~~~~~~e~i~~~~~~l~~~~~ 346 (374)
+++ +++++++++++|+++++
T Consensus 321 s~~---~~~~~~~l~~al~~~~~ 340 (350)
T 3fkd_A 321 TTQ---RPAQNQLFIKALETFLE 340 (350)
T ss_dssp ECC---CHHHHHHHHHHHHHHHT
T ss_pred EcC---CHHHHHHHHHHHHHHHH
Confidence 943 88899999999999887
No 123
>1qz9_A Kynureninase; kynurenine, tryptophan, PLP, vitamin B6, pyridoxal-5'-phosph hydrolase; HET: PLP P3G; 1.85A {Pseudomonas fluorescens} SCOP: c.67.1.3
Probab=99.95 E-value=3.6e-26 Score=216.22 Aligned_cols=296 Identities=16% Similarity=0.126 Sum_probs=207.0
Q ss_pred CCcHHHHHHHHhcccCCC--eEEecCChHHHHHHHHHHHHHcc-cccccCCCCccEEEEeccCCCCcccccc-cccCCcc
Q 017259 20 NDKFPVFAERLTSMFGYD--MVLPMNTGAEGVETALKLARKWG-YVKKKFSIDEAIIVSCCGCFHGRTLAAI-SMSCDNE 95 (374)
Q Consensus 20 ~~~~~~l~~~l~~~~~~~--~~~~~~~gs~a~~~al~~~~~~~-~~~~G~~~~~~~vi~~~~~yhg~~~~~~-~~~~~~~ 95 (374)
.+...++++++++++|.+ ++++++|++++++.+++.+.... ...+| |++++..+.+|+.+.... .+....
T Consensus 70 ~~~~~~l~~~la~~~g~~~~~v~~~~g~t~al~~al~~~~~~~~~~~~g-----d~vii~~~~~~~~~~~~~~~~~~~~- 143 (416)
T 1qz9_A 70 RDLSERLGNRLATLIGARDGEVVVTDTTSINLFKVLSAALRVQATRSPE-----RRVIVTETSNFPTDLYIAEGLADML- 143 (416)
T ss_dssp GGHHHHHHHHHHTTTTCCTTSEEECSCHHHHHHHHHHHHHHHHHHHSTT-----CCEEEEETTSCHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHcCCCcccEEEeCChhHHHHHHHHhhcccccccCCC-----CcEEEEcCCCCCchHHHHHHHHHHh-
Confidence 366788999999998754 89999999999999998874210 00456 776666666666433221 111000
Q ss_pred ccccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEeccccCCc
Q 017259 96 AIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLA 175 (374)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~~~~ 175 (374)
. ....+..++. +++++++++ ++++++++++++|++|.+.+ +++|.++|++||+++|+||+|+ ++
T Consensus 144 -~-----~g~~~~~v~~--~~~l~~~i~---~~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~D~a~~-~g 207 (416)
T 1qz9_A 144 -Q-----QGYTLRLVDS--PEELPQAID---QDTAVVMLTHVNYKTGYMHD----MQALTALSHECGALAIWDLAHS-AG 207 (416)
T ss_dssp -C-----SSCEEEEESS--GGGHHHHCS---TTEEEEEEESBCTTTCBBCC----HHHHHHHHHHHTCEEEEECTTT-TT
T ss_pred -c-----CCceEEEeCc--HHHHHHHhC---CCceEEEEeccccCcccccC----HHHHHHHHHHcCCEEEEEcccc-cc
Confidence 0 0012333443 778888776 47899999999999999998 9999999999999999999997 32
Q ss_pred ccccCcccccCCCCCcEEEe--cccccCCccch-hhheeCHHHHhhcCCCCCC-----------------------CCCC
Q 017259 176 RSGRMLASDWEEVRPDMVIL--GKALGGGVIPV-SAVLADKEVMLCIQPGEHG-----------------------STFG 229 (374)
Q Consensus 176 ~~g~~~~~~~~~~~~d~~s~--sK~~~~G~~~~-G~~~~~~~~~~~~~~~~~~-----------------------~~~~ 229 (374)
.. .+.... ..+|++++ +|.+.+|. ++ |+++.++++.+.+.+...+ ..++
T Consensus 208 ~~--~~~~~~--~~~d~~~~s~~K~l~~g~-~~~g~l~~~~~~~~~l~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~ 282 (416)
T 1qz9_A 208 AV--PVDLHQ--AGADYAIGCTYKYLNGGP-GSQAFVWVSPQLCDLVPQPLSGWFGHSRQFAMEPRYEPSNGIARYLCGT 282 (416)
T ss_dssp TS--CCCHHH--HTCSEEEECSSSTTCCCT-TCCCEEEECTTTTTTSCCSCCCGGGBCTTSCCCSSCCBCSSGGGGCCSC
T ss_pred Cc--CCChhh--cCCCEEEecCcccCCCCC-CCeEEEEECHHHHhccCCCccccCccccccCCCCccCCCcchHHhcCCC
Confidence 21 111111 23576654 59998888 88 9999998887776653111 1235
Q ss_pred CCHHHHHHHHHHHHHHhhh---cHHHHHHHHHHHHHHHHHHHHH--hCCCceeeEE--EEeeeEEEEeccCCCchhHHHH
Q 017259 230 GNPLASAVAIASLDVIRDE---KLAERSAHLGEELRQHLFKIQQ--QFPNYVKEVR--GRGLFNAVEFDKTALPVSAYDI 302 (374)
Q Consensus 230 ~~~~~~~aa~~al~~~~~~---~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~--~~g~~~~~~~~~~~~~~~~~~~ 302 (374)
.+..+++++.++++.+..+ ++.++++++.+++.+.|+++.. .+ .+..... ..+.++++.++ +..++
T Consensus 283 ~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~------~~~~l 355 (416)
T 1qz9_A 283 QPITSLAMVECGLDVFAQTDMASLRRKSLALTDLFIELVEQRCAAHEL-TLVTPREHAKRGSHVSFEHP------EGYAV 355 (416)
T ss_dssp CCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHTTSCC-EECSCSSGGGBCSEEEEECT------THHHH
T ss_pred CCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhccCCCe-EEeCCCCHHHcCCEEEEecC------CHHHH
Confidence 6777888888888887542 5678888888888888877521 11 0111100 13566777665 35789
Q ss_pred HHHHHHCCeEeccCCCCEEEEecC-CCCCHHHHHHHHHHHHHHHhccCC
Q 017259 303 CLKMKERGILAKPTHDTIVRLTPP-LSISSNELQEGSKALHDVLELDLP 350 (374)
Q Consensus 303 ~~~l~~~Gi~v~~~~~~~lRi~~~-~~~~~e~i~~~~~~l~~~~~~~~~ 350 (374)
.+.|.++||.+.....+++||+++ +.++++++++++++|+++++ +..
T Consensus 356 ~~~l~~~gi~~~~~~~~~lRis~~~~~~t~~~i~~~~~~l~~~~~-~~~ 403 (416)
T 1qz9_A 356 IQALIDRGVIGDYREPRIMRFGFTPLYTTFTEVWDAVQILGEILD-RKT 403 (416)
T ss_dssp HHHHHTTTEECEEETTTEEEEECCTTTCCHHHHHHHHHHHHHHHH-HTT
T ss_pred HHHHHhCCcEeccCCCCeEEEeCcccCCCHHHHHHHHHHHHHHHh-ccc
Confidence 999999999987766789999987 58899999999999999998 643
No 124
>3isl_A Purine catabolism protein PUCG; pyridoxalphosphate, PLP dependent enzymes, purine metabolism transaminases, aminotransferases; HET: PLP; 2.06A {Bacillus subtilis}
Probab=99.95 E-value=5.7e-27 Score=221.56 Aligned_cols=289 Identities=15% Similarity=0.080 Sum_probs=206.7
Q ss_pred CCcHHHHHHHHhcccCCC--eEE-ecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccc-cccccCCcc
Q 017259 20 NDKFPVFAERLTSMFGYD--MVL-PMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLA-AISMSCDNE 95 (374)
Q Consensus 20 ~~~~~~l~~~l~~~~~~~--~~~-~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~-~~~~~~~~~ 95 (374)
.+...+++++++++++.+ .++ +++||++|++.+++.+ ..+| |+|++.+++||+.... .....+
T Consensus 43 ~~~~~~l~~~la~~~g~~~~~~~~~~~s~t~al~~~~~~l-----~~~g-----d~Vl~~~~~~~~~~~~~~~~~~g--- 109 (416)
T 3isl_A 43 TGIMNETMEMLRELFQTKNRWAYPIDGTSRAGIEAVLASV-----IEPE-----DDVLIPIYGRFGYLLTEIAERYG--- 109 (416)
T ss_dssp HHHHHHHHHHHHHHTTCCCSEEEEEESCHHHHHHHHHHHH-----CCTT-----CEEEEEESSHHHHHHHHHHHHTT---
T ss_pred HHHHHHHHHHHHHHhCCCCCcEEEecCcHHHHHHHHHHHh-----cCCC-----CEEEEecCCcccHHHHHHHHhcC---
Confidence 445778999999988654 444 8999999999999988 5677 9999999999873221 111111
Q ss_pred ccccCCCCCCCceeccCC-----CHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEecc
Q 017259 96 AIRGFGPLLPGHLKVDFG-----DITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEI 170 (374)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~-----d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea 170 (374)
..+..++.+ |++++++++++. +++++++++++|++|.+.+ +++|.++|++||+++|+|++
T Consensus 110 ---------~~~~~v~~~~~~~~d~~~l~~~i~~~--~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~D~a 174 (416)
T 3isl_A 110 ---------ANVHMLECEWGTVFDPEDIIREIKKV--KPKIVAMVHGETSTGRIHP----LKAIGEACRTEDALFIVDAV 174 (416)
T ss_dssp ---------CEEEEEECCTTCCCCHHHHHHHHHHH--CCSEEEEESEETTTTEECC----CHHHHHHHHHTTCEEEEECT
T ss_pred ---------CeeEEEecCCCCCCCHHHHHHHHhhC--CCcEEEEEccCCCCceecC----HHHHHHHHHHcCCEEEEECC
Confidence 112222222 899999999843 5789999999999999998 99999999999999999999
Q ss_pred ccCCcccccCcccccCCCCCcEE--EecccccCCccchhhheeCHHHHhhcCCCC-------------------------
Q 017259 171 QSGLARSGRMLASDWEEVRPDMV--ILGKALGGGVIPVSAVLADKEVMLCIQPGE------------------------- 223 (374)
Q Consensus 171 ~~~~~~~g~~~~~~~~~~~~d~~--s~sK~~~~G~~~~G~~~~~~~~~~~~~~~~------------------------- 223 (374)
|+.. . ..+. .....+|++ +++|+++++. ++|+++.++++.+.+....
T Consensus 175 ~~~~-~--~~~~--~~~~~~d~~~~s~~K~l~g~~-g~g~~~~~~~~~~~~~~~~~~~~Gw~~~~~~~~~~gg~~~~~~~ 248 (416)
T 3isl_A 175 ATIG-G--CEVK--VDEWKIDAAIGGTQKCLSVPS-GMAPITYNERVADVIAARKKVERGIATQADRAALSGNRPITSNY 248 (416)
T ss_dssp TTTT-T--SCCC--TTTTTCSEEECCSSSTTCCCS-SEEEEEECHHHHHHHHTC------------------CCCCSCST
T ss_pred cccc-C--CCcc--hhhcCCCEEEecCccccCCCC-CeEEEEECHHHHHHhhccccccccccccccchhccCCCCCCccc
Confidence 9721 1 1111 122345666 4559988877 8899999998877665321
Q ss_pred -------------CCCCCCCCHHHHHHHHHHHHHHhhh---cHHHHHHHHHHHHHHHHHHHHHhCCCceee-EEEEeeeE
Q 017259 224 -------------HGSTFGGNPLASAVAIASLDVIRDE---KLAERSAHLGEELRQHLFKIQQQFPNYVKE-VRGRGLFN 286 (374)
Q Consensus 224 -------------~~~~~~~~~~~~~aa~~al~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~g~~~ 286 (374)
.....+.+..++.++.++++.+... ++.++++++.+++.+.|++.. + .+... ....+.++
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g--~-~~~~~~~~~~~~~~ 325 (416)
T 3isl_A 249 FDLSQLEDYWSERRLNHHTEATTMLYALREGVRLVLEEGLETRFERHRHHEAALAAGIKAMG--L-RLFGDDSCKMPVVT 325 (416)
T ss_dssp TCHHHHHHHTSTTCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTT--C-CBCSCGGGBCTTEE
T ss_pred cchHHHHhhhcccCCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHcC--C-EeccCccccCCcEE
Confidence 1123355777888888888776543 567777788888888887742 1 11111 11235677
Q ss_pred EEEeccCCCchhHHHHHHHHHHC-CeEeccC----CCCEEEEecCCCCCHHH-HHHHHHHHHHHHhccC
Q 017259 287 AVEFDKTALPVSAYDICLKMKER-GILAKPT----HDTIVRLTPPLSISSNE-LQEGSKALHDVLELDL 349 (374)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~l~~~-Gi~v~~~----~~~~lRi~~~~~~~~e~-i~~~~~~l~~~~~~~~ 349 (374)
++.+++.. +..++.+.|.++ ||.++++ ..+++|++++...++++ +++++++|+++++ ++
T Consensus 326 ~~~~~~~~---~~~~l~~~L~~~~gi~v~~g~~~~~~~~iRi~~~~~~~~~e~i~~~~~~l~~~~~-~~ 390 (416)
T 3isl_A 326 CVEIPGGI---DGESVRDMLLAQFGIEIASSFGPLAGKIWRIGTMGYSCRKENVLFVLAGLEAVLL-RH 390 (416)
T ss_dssp EEECCTTC---CHHHHHHHHHHHHCEECBCCCSTTTTTEEEEECCGGGCSHHHHHHHHHHHHHHHH-HT
T ss_pred EEeCCCCC---CHHHHHHHHHHhCCEEEecCCCCCCCCEEEEecccCCCcHHHHHHHHHHHHHHHH-Hc
Confidence 77776443 688999999887 9999874 36899999866666666 9999999999998 65
No 125
>2ay1_A Aroat, aromatic amino acid aminotransferase; HET: PLP AHC; 2.20A {Paracoccus denitrificans} SCOP: c.67.1.1 PDB: 1ay5_A* 1ay4_A* 1ay8_A* 2ay2_A* 2ay3_A* 2ay4_A* 2ay5_A* 2ay6_A* 2ay7_A* 2ay8_A* 2ay9_A*
Probab=99.95 E-value=1.1e-27 Score=225.00 Aligned_cols=289 Identities=13% Similarity=0.090 Sum_probs=198.1
Q ss_pred CCcHHHHHHHHhccc-C----CCeEEe--cCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccC
Q 017259 20 NDKFPVFAERLTSMF-G----YDMVLP--MNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSC 92 (374)
Q Consensus 20 ~~~~~~l~~~l~~~~-~----~~~~~~--~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~ 92 (374)
.....++++.+++++ + .+++++ |+||++|++.+++++... .+| |+|++..|+||++...+...+.
T Consensus 68 ~~g~~~lr~~la~~~~~~~~~~~~v~~~~~~g~~~a~~~~~~~~~~~---~~g-----d~vl~~~p~~~~~~~~~~~~g~ 139 (394)
T 2ay1_A 68 LSGEPEFQKAMGELILGDGLKSETTATLATVGGTGALRQALELARMA---NPD-----LRVFVSDPTWPNHVSIMNFMGL 139 (394)
T ss_dssp SSCCHHHHHHHHHHHHGGGCCGGGEEEEEEEHHHHHHHHHHHHHHHH---CTT-----CCEEEEESCCHHHHHHHHHHTC
T ss_pred CCCcHHHHHHHHHHHhCCCCCcccEEEEecCCchhHHHHHHHHHHhc---CCC-----CEEEEcCCCChhHHHHHHHcCC
Confidence 345677777777765 3 468998 999999999999888531 256 8999999999987665554433
Q ss_pred CccccccCCCCCCCceeccC---C----CHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEE
Q 017259 93 DNEAIRGFGPLLPGHLKVDF---G----DITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILM 165 (374)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~---~----d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~l 165 (374)
. +..++. + |++++++++++++++++++++++++|++|.+. +.+++++|.++|++||+++
T Consensus 140 ~-------------~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~nptG~~~-~~~~l~~i~~~~~~~~~~l 205 (394)
T 2ay1_A 140 P-------------VQTYRYFDAETRGVDFEGMKADLAAAKKGDMVLLHGCCHNPTGANL-TLDQWAEIASILEKTGALP 205 (394)
T ss_dssp C-------------EEEEECEETTTTEECHHHHHHHHHTCCTTCEEEEESSSCTTTCCCC-CHHHHHHHHHHHHHHTCEE
T ss_pred c-------------eEEEecccccCCccCHHHHHHHHHhCCCCCEEEEeCCCCCCCCCCC-CHHHHHHHHHHHHHCCCEE
Confidence 2 122222 1 79999999986544578888888999999766 7999999999999999999
Q ss_pred EEeccccCCcccc--cCcccccC-CCCCc---EEEeccccc-CCccchhhhee---CHHHHhhc----CCCCCCCCCCCC
Q 017259 166 IADEIQSGLARSG--RMLASDWE-EVRPD---MVILGKALG-GGVIPVSAVLA---DKEVMLCI----QPGEHGSTFGGN 231 (374)
Q Consensus 166 i~Dea~~~~~~~g--~~~~~~~~-~~~~d---~~s~sK~~~-~G~~~~G~~~~---~~~~~~~~----~~~~~~~~~~~~ 231 (374)
|+||+|+++++.+ .......+ ...++ +.|+||.++ +|+ |+||+++ ++++.+.+ ...........+
T Consensus 206 i~De~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~-riG~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 284 (394)
T 2ay1_A 206 LIDLAYQGFGDGLEEDAAGTRLIASRIPEVLIAASCSKNFGIYRE-RTGCLLALCADAATRELAQGAMAFLNRQTYSFPP 284 (394)
T ss_dssp EEEECCTTSSSCHHHHHHHHHHHHHHCSSEEEEEECTTTTTCGGG-CEEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCC
T ss_pred EEecCccccccCcccchHHHHHHhhcCCCEEEEEeccCCCcCcCC-ccceEEEEeCCHHHHHHHHHHHHHHHhhhcCCCC
Confidence 9999999886543 11122111 11234 338899999 799 9999987 56543332 211112222348
Q ss_pred HHHHHHHHHHHHHH--------hhhcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCchhHHHHH
Q 017259 232 PLASAVAIASLDVI--------RDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDIC 303 (374)
Q Consensus 232 ~~~~~aa~~al~~~--------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 303 (374)
+++++++.++++.. ..++..++++++++++.+.|+++.... ++....+..+.++|+.++ ...+.
T Consensus 285 ~~~~~a~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~-~~~~~~~~~g~~~~~~~~-------~~~~~ 356 (394)
T 2ay1_A 285 FHGAKIVSTVLTTPELRADWMAELEAVRSGMLRLREQLAGELRDLSGSD-RFGFVAEHRGMFSRLGAT-------PEQVK 356 (394)
T ss_dssp CHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS-TTTHHHHCCSSEEECCCC-------HHHHH
T ss_pred hHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC-CeeEEcCCceEEEeeCCC-------HHHHH
Confidence 88888888887643 112456677777777777777664100 011111223566665332 34566
Q ss_pred HHHHHCCeEeccCCCCEEEEecCCCCCHHHHHHHHHHHHHH
Q 017259 304 LKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDV 344 (374)
Q Consensus 304 ~~l~~~Gi~v~~~~~~~lRi~~~~~~~~e~i~~~~~~l~~~ 344 (374)
+.|.++||.+.++ +||+++ ..+++++++++++|+++
T Consensus 357 ~~l~~~gi~v~~~----~Ris~~-~~~~~~i~~~~~~l~~~ 392 (394)
T 2ay1_A 357 RIKEEFGIYMVGD----SRINIA-GLNDNTIPILARAIIEV 392 (394)
T ss_dssp HHHHHHCEECCTT----CEEEGG-GCCTTTHHHHHHHHHHH
T ss_pred HHHHhCCEEecCC----CeEEee-cCCHhhHHHHHHHHHHc
Confidence 7777899999875 599977 46899999999999875
No 126
>3lvm_A Cysteine desulfurase; structural genomics, montreal-kingston bacterial structural genomics initiative, BSGI, transferase; HET: PLP; 2.05A {Escherichia coli} PDB: 3lvk_A* 3lvl_B* 3lvj_A* 1p3w_B*
Probab=99.95 E-value=8.5e-27 Score=221.01 Aligned_cols=291 Identities=14% Similarity=0.145 Sum_probs=203.2
Q ss_pred CcHHHHHHHHhcccCCC--eEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccCCccccc
Q 017259 21 DKFPVFAERLTSMFGYD--MVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIR 98 (374)
Q Consensus 21 ~~~~~l~~~l~~~~~~~--~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~ 98 (374)
+...+++++|+++++.+ ++++++||++|++.+++++.... .++| |+|++..++|++.......+.. .+
T Consensus 68 ~~~~~l~~~la~~~~~~~~~v~~~~ggt~a~~~a~~~l~~~~-~~~g-----d~Vl~~~~~~~~~~~~~~~~~~-~g--- 137 (423)
T 3lvm_A 68 EAVDIARNQIADLVGADPREIVFTSGATESDNLAIKGAANFY-QKKG-----KHIITSKTEHKAVLDTCRQLER-EG--- 137 (423)
T ss_dssp HHHHHHHHHHHHHHTCCGGGEEEESSHHHHHHHHHHHHHHHH-TTTC-----CEEEEETTSCHHHHHHHHHHHH-TT---
T ss_pred HHHHHHHHHHHHHcCCCCCeEEEeCChHHHHHHHHHHHHHhh-ccCC-----CEEEECCccchHHHHHHHHHHH-cC---
Confidence 45678999999998776 89999999999999999886321 2356 9999999999876554433210 01
Q ss_pred cCCCCCCCceeccCC-----CHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEeccccC
Q 017259 99 GFGPLLPGHLKVDFG-----DITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSG 173 (374)
Q Consensus 99 ~~~~~~~~~~~~~~~-----d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~~ 173 (374)
..+..++.+ |+++|+++++ ++++++++++++|++|.+.+ +++|.++|++||++||+||+|+.
T Consensus 138 ------~~~~~v~~~~~~~~d~~~l~~~i~---~~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~Dea~~~ 204 (423)
T 3lvm_A 138 ------FEVTYLAPQRNGIIDLKELEAAMR---DDTILVSIMHVNNEIGVVQD----IAAIGEMCRARGIIYHVDATQSV 204 (423)
T ss_dssp ------CEEEEECCCTTSCCCHHHHHHHCC---TTEEEEECCSBCTTTCBBCC----HHHHHHHHHHHTCEEEEECTTTT
T ss_pred ------CEEEEeccCCCCccCHHHHHHhcC---CCcEEEEEeCCCCCCccccC----HHHHHHHHHHcCCEEEEEhhhhc
Confidence 111222222 7999999887 57899999999999999998 99999999999999999999973
Q ss_pred CcccccCcccccCCCCCcEE--EecccccCCccchhhheeCHHHHhhcCCCCC-------CCCCCCCHHHHHHHHHHHHH
Q 017259 174 LARSGRMLASDWEEVRPDMV--ILGKALGGGVIPVSAVLADKEVMLCIQPGEH-------GSTFGGNPLASAVAIASLDV 244 (374)
Q Consensus 174 ~~~~g~~~~~~~~~~~~d~~--s~sK~~~~G~~~~G~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~aa~~al~~ 244 (374)
. . .........+|++ |+||.+ |+. ++|+++++++..+.+..... ....+.+...++++.++++.
T Consensus 205 ~-~----~~~~~~~~~~di~~~s~sK~~-g~~-g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~ 277 (423)
T 3lvm_A 205 G-K----LPIDLSQLKVDLMSFSGHKIY-GPK-GIGALYVRRKPRVRIEAQMHGGGHERGMRSGTLPVHQIVGMGEAYRI 277 (423)
T ss_dssp T-T----SCCCTTTSCCSEEEEESTTTT-SCS-SCEEEEECBTTBCCCCCSSCSSCTTTTTCCSCCCHHHHHHHHHHHHH
T ss_pred C-C----CCcChhhcCCCEEEechHHhc-CCC-CeEEEEEeccccCCCCccccCCcccccccCCCCCHHHHHHHHHHHHH
Confidence 2 1 1122223456766 555954 444 57899988877777665432 22345677888888788877
Q ss_pred Hhh--hcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEE---EEeeeEEEEeccCCCchhHHHHHHHHHHCCeEeccCC--
Q 017259 245 IRD--EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVR---GRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTH-- 317 (374)
Q Consensus 245 ~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~---~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~-- 317 (374)
+.. +++.++++++.+++.+.|++ +|++..... ..+.++.+.++.. +..++.+.|.+ |.++++.
T Consensus 278 ~~~~~~~~~~~~~~~~~~l~~~L~~----~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~~~l~~--i~v~~g~~~ 347 (423)
T 3lvm_A 278 AKEEMATEMERLRGLRNRLWNGIKD----IEEVYLNGDLEHGAPNILNVSFNYV----EGESLIMALKD--LAVSSGSAC 347 (423)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTT----STTEEEESCSTTBCTTEEEEEETTS----CHHHHHHHTTT--EECBCCCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc----CCCEEEeCCccccCCCeEEEEeCCC----CHHHHHHHHhh--heeccCccc
Confidence 654 34555555566666555543 322211111 1135666666443 57788888877 7777642
Q ss_pred ---------------------CCEEEEecCCCCCHHHHHHHHHHHHHHHhccCCcC
Q 017259 318 ---------------------DTIVRLTPPLSISSNELQEGSKALHDVLELDLPKM 352 (374)
Q Consensus 318 ---------------------~~~lRi~~~~~~~~e~i~~~~~~l~~~~~~~~~~~ 352 (374)
.+++||+++...+++++++++++|+++++ ++.+.
T Consensus 348 ~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~t~e~i~~~~~~l~~~~~-~~~~~ 402 (423)
T 3lvm_A 348 TSASLEPSYVLRALGLNDELAHSSIRFSLGRFTTEEEIDYTIELVRKSIG-RLRDL 402 (423)
T ss_dssp ----CCCCHHHHHHTCCHHHHHTEEEEECCTTCCHHHHHHHHHHHHHHHH-HHHTS
T ss_pred cCCCccccHHHHHhCCCccccCceEEEECCCCCCHHHHHHHHHHHHHHHH-Hhhcc
Confidence 38999999988999999999999999998 66443
No 127
>2rfv_A Methionine gamma-lyase; pyridoxal-5'-phosphate, PLP-dependent enzyme; HET: LLP; 1.35A {Citrobacter freundii} PDB: 1y4i_A* 3jwa_A* 3jw9_A* 3jwb_A* 3mkj_A*
Probab=99.95 E-value=5.2e-27 Score=220.87 Aligned_cols=297 Identities=11% Similarity=0.073 Sum_probs=204.8
Q ss_pred ccCcCCCCCcHHHHHHHHhcccCCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccC
Q 017259 13 LSSRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSC 92 (374)
Q Consensus 13 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~ 92 (374)
+.++.+.++..+++++++++++|.+++++++||++|++.+++.+ .++| |+|++.+++|++.......+..
T Consensus 56 ~~~~~~~~~~~~~l~~~la~~~g~~~~i~~~sG~~a~~~~l~~~-----~~~g-----d~vi~~~~~~~~~~~~~~~~~~ 125 (398)
T 2rfv_A 56 YIYTRLGNPTTDALEKKLAVLERGEAGLATASGISAITTTLLTL-----CQQG-----DHIVSASAIYGCTHAFLSHSMP 125 (398)
T ss_dssp CSBTTTCCHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHH-----CCTT-----CEEEEESSSCHHHHHHHHTHHH
T ss_pred CceeCCCChHHHHHHHHHHHHhCCCcEEEECCHHHHHHHHHHHH-----hCCC-----CEEEEcCCCcccHHHHHHHHHH
Confidence 33445667889999999999999889999999999999999988 4567 9999999999876544311100
Q ss_pred CccccccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEecccc
Q 017259 93 DNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQS 172 (374)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~ 172 (374)
. ....+..++.+|+++++++++ ++++++++++++|++|.+.+ +++|.++|++||+++|+||+|+
T Consensus 126 ~---------~g~~~~~v~~~d~~~l~~~i~---~~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~De~~~ 189 (398)
T 2rfv_A 126 K---------FGINVRFVDAAKPEEIRAAMR---PETKVVYIETPANPTLSLVD----IETVAGIAHQQGALLVVDNTFM 189 (398)
T ss_dssp H---------TTCEEEEECTTSHHHHHHHCC---TTEEEEEEESSBTTTTBCCC----HHHHHHHHHHTTCEEEEECTTT
T ss_pred H---------cCCEEEEeCCCCHHHHHHhcC---CCCeEEEEECCCCCCCcccC----HHHHHHHHHHcCCEEEEECCCc
Confidence 0 012345556668999998887 57999999999999999997 9999999999999999999998
Q ss_pred CCcccccCcccccCCCCCcEEEecccccC-Cccch-hhheeCHHHHh-hcCCCCCCC-CCCCCHHHHHHHHHHHHHHhhh
Q 017259 173 GLARSGRMLASDWEEVRPDMVILGKALGG-GVIPV-SAVLADKEVML-CIQPGEHGS-TFGGNPLASAVAIASLDVIRDE 248 (374)
Q Consensus 173 ~~~~~g~~~~~~~~~~~~d~~s~sK~~~~-G~~~~-G~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~aa~~al~~~~~~ 248 (374)
.+.. +... .++.+..+.|+||.+++ |+ |+ |++++++++++ .+....... +++.+++.++++.++++.+.
T Consensus 190 ~~~~-~~~~---~~~~di~~~s~sK~~~~~g~-~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-- 262 (398)
T 2rfv_A 190 SPYC-QQPL---QLGADIVVHSVTKYINGHGD-VIGGIIVGKQEFIDQARFVGLKDITGGCMSPFNAWLTLRGVKTLG-- 262 (398)
T ss_dssp CTTT-CCGG---GGTCSEEEEETTTTTTCSSC-CCCEEEEECHHHHHHHHHTHHHHTTCCCCCHHHHHHHHHHHTTHH--
T ss_pred cccc-CCch---hhCCcEEEEeCcccccCCCC-ceEEEEEECHHHHHHHHHHHHHhCCCCCCCHHHHHHHHhhhhhHH--
Confidence 4322 2221 12322234588999975 77 88 89999988776 555433333 45778888888888886432
Q ss_pred cHHHHHHHHHHHHHHHHHHHH----------HhCCCcee---eEEEEeeeEEEEeccCCCchhHHHHHHHHHHCCeEecc
Q 017259 249 KLAERSAHLGEELRQHLFKIQ----------QQFPNYVK---EVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKP 315 (374)
Q Consensus 249 ~~~~~~~~~~~~~~~~l~~~~----------~~~~~~~~---~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~ 315 (374)
...++..++.+++.+.|++.. ..+|++.. ..++.+.++++.++... .....+.+.+...|+.+++
T Consensus 263 ~~~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~~~~g~~~~~~~~~~~--~~~~~l~~~~~~~~i~~~~ 340 (398)
T 2rfv_A 263 IRMERHCENALKIARFLEGHPSITRVYYPGLSSHPQYELGQRQMSLPGGIISFEIAGGL--EAGRRMINSVELCLLAVSL 340 (398)
T ss_dssp HHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEETTHH--HHHHHHHTTCSSSEECSCC
T ss_pred HHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEEcCCH--HHHHHHHHhCCcceeccCC
Confidence 234555556666666665421 00110000 01235788888886310 1234444444444666544
Q ss_pred C-------------------------C--CCEEEEecCCCCCHHHHHHHHHHHHHH
Q 017259 316 T-------------------------H--DTIVRLTPPLSISSNELQEGSKALHDV 344 (374)
Q Consensus 316 ~-------------------------~--~~~lRi~~~~~~~~e~i~~~~~~l~~~ 344 (374)
+ + .+.+|++++...++++++++.++|+++
T Consensus 341 G~~~~li~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~~ 396 (398)
T 2rfv_A 341 GDTETLIQHPASMTHSPVAPEERLKAGITDGLIRLSVGLEDPEDIINDLEHAIRKA 396 (398)
T ss_dssp SSSSCEEECHHHHTSSSSCHHHHHHTTCCTTEEEEECCSSCHHHHHHHHHHHHHHH
T ss_pred CCcceeeecccccccccCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHHhh
Confidence 3 1 589999999999999999988888754
No 128
>3p1t_A Putative histidinol-phosphate aminotransferase; PLP-dependent transferase-like, structural genomics, joint C structural genomics, JCSG; HET: TLA; 2.60A {Burkholderia pseudomallei}
Probab=99.95 E-value=2.1e-26 Score=211.56 Aligned_cols=281 Identities=15% Similarity=0.126 Sum_probs=197.9
Q ss_pred CCCCCcHHHHHHHHhcccCC--CeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccCCc
Q 017259 17 AFYNDKFPVFAERLTSMFGY--DMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDN 94 (374)
Q Consensus 17 ~~~~~~~~~l~~~l~~~~~~--~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~~~ 94 (374)
.|+.+...++++.++++++. +++++|+|++++++.++..+ +| |+|++..|+|++....+...+...
T Consensus 47 ~y~~~~~~~lr~~la~~~~~~~~~i~~t~G~~~~l~~~~~~~-------~g-----d~vl~~~p~~~~~~~~~~~~g~~~ 114 (337)
T 3p1t_A 47 RYPFDAEPRVMRKLAEHFSCPEDNLMLVRGIDECFDRISAEF-------SS-----MRFVTAWPGFDGYRARIAVSGLRH 114 (337)
T ss_dssp SCCTTHHHHHHHHHHHHHTSCGGGEEEESHHHHHHHHHHHHS-------TT-----SEEEEESSSCSHHHHHHTTSCCEE
T ss_pred cCCCCchHHHHHHHHHHhCcCHHHEEEeCCHHHHHHHHHHhc-------CC-----CeEEEeCCCcHHHHHHHHHcCCEE
Confidence 35677889999999999865 48999999999999888765 45 999999999988665544332211
Q ss_pred cccccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEeccccCC
Q 017259 95 EAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGL 174 (374)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~~~ 174 (374)
... +...+. ..|+++++++ .+++++++++++|++|.+.+ ++++.++|+++++ +|+||+|++|
T Consensus 115 ~~v----~~~~~~----~~d~~~l~~~-----~~~~~v~i~~p~nptG~~~~----~~~l~~l~~~~~~-~ivDea~~~~ 176 (337)
T 3p1t_A 115 FEI----GLTDDL----LLDPNDLAQV-----SRDDCVVLANPSNPTGQALS----AGELDQLRQRAGK-LLIDETYVDY 176 (337)
T ss_dssp EEE----CBCTTS----SBCHHHHTTC-----CTTEEEEEESSCTTTCCCCC----HHHHHHHHHHCSE-EEEECTTGGG
T ss_pred EEe----cCCCCC----CCCHHHHHhh-----cCCCEEEEeCCCCCCCCCCC----HHHHHHHHHhCCc-EEEECCChhh
Confidence 110 100000 0167777654 35788999999999999998 8999999999997 5669999977
Q ss_pred cccccCcccccCCCCCcEEEeccccc-CCccchhhheeCHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHhh-hcHHH
Q 017259 175 ARSGRMLASDWEEVRPDMVILGKALG-GGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRD-EKLAE 252 (374)
Q Consensus 175 ~~~g~~~~~~~~~~~~d~~s~sK~~~-~G~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~al~~~~~-~~~~~ 252 (374)
+..+.. .....+....+.|+||.++ +|+ |+||+++++++.+.+... ...++.+.+++.++.++++.... ++..+
T Consensus 177 ~~~~~~-~~~~~~~~i~~~S~sK~~g~~G~-r~G~~~~~~~~~~~l~~~--~~~~~~~~~~~~a~~~~l~~~~~~~~~~~ 252 (337)
T 3p1t_A 177 SSFRAR-GLAYGENELVFRSFSKSYGLAGL-RLGALFGPSELIAAMKRK--QWFCNVGTLDLHALEAALDNDRAREAHIA 252 (337)
T ss_dssp SSCSSS-CCCCBTTEEEEEESSSTTCCTTT-CCEEEECCHHHHHHHHTT--SCTTCSCHHHHHHHHHHHTCHHHHHHHHH
T ss_pred cccccc-ccccCCCEEEEeeCchhccCcch-heEEEEeCHHHHHHHHhh--cCCCCCCHHHHHHHHHHhCCHHHHHHHHH
Confidence 543322 1111111122448999998 799 999999999998888753 34567788888888877764221 23445
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCchhHHHHHHHHHHCCeEeccCC----CCEEEEecCCC
Q 017259 253 RSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTH----DTIVRLTPPLS 328 (374)
Q Consensus 253 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~----~~~lRi~~~~~ 328 (374)
++.++++++.+.|+++. +. ...+.+.++++..++ ..++.+.|.++||.++++. ++++||+++
T Consensus 253 ~~~~~~~~l~~~L~~~g-----~~-~~~~~~~~~~~~~~~------~~~~~~~l~~~gi~v~~g~~~~~~~~iRis~~-- 318 (337)
T 3p1t_A 253 KTLAQRRRVADALRGLG-----YR-VASSEANFVLVENAA------GERTLRFLRERGIQVKDAGQFGLHHHIRISIG-- 318 (337)
T ss_dssp HHHHHHHHHHHHHHHTT-----CC-BCCCSSSEEEEECTT------THHHHHHHHHTTEECEEGGGGTCCSEEEEECC--
T ss_pred HHHHHHHHHHHHHHHCc-----CE-ECCCCCeEEEEEcCC------HHHHHHHHHHCCeEEEECccCCCCCeEEEecC--
Confidence 55555666666665541 21 123456777776543 3578888999999998864 589999944
Q ss_pred CCHHHHHHHHHHHHHHHh
Q 017259 329 ISSNELQEGSKALHDVLE 346 (374)
Q Consensus 329 ~~~e~i~~~~~~l~~~~~ 346 (374)
+++++++++++|+++.+
T Consensus 319 -~~~~~~~l~~al~~~~~ 335 (337)
T 3p1t_A 319 -REEDNDRLLAALAEYSD 335 (337)
T ss_dssp -CHHHHHHHHHHHHHHTC
T ss_pred -CHHHHHHHHHHHHHHhh
Confidence 78999999999988764
No 129
>4f4e_A Aromatic-amino-acid aminotransferase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: LLP; 1.80A {Burkholderia pseudomallei} PDB: 4eff_A*
Probab=99.95 E-value=3e-27 Score=224.12 Aligned_cols=290 Identities=13% Similarity=0.107 Sum_probs=191.3
Q ss_pred CcHHHHHHHHhcccC----CC--eEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccCCc
Q 017259 21 DKFPVFAERLTSMFG----YD--MVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDN 94 (374)
Q Consensus 21 ~~~~~l~~~l~~~~~----~~--~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~~~ 94 (374)
++++.+++.+....+ .+ ++++|+||++|++.+++++.. ..+| |+|++.+|+|+++...+...+..
T Consensus 96 ~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~t~al~~~~~~~~~---~~~g-----d~Vlv~~p~~~~~~~~~~~~g~~- 166 (420)
T 4f4e_A 96 AYDASVQKLLLGDDSPLIAAGRVVTAQALGGTGALKIGADFLRT---LNPK-----AKVAISDPSWENHRALFDMAGFE- 166 (420)
T ss_dssp HHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHHHHHH---HCTT-----CCEEEEESCCHHHHHHHHHTTCC-
T ss_pred HHHHHHHHHhcCCCccccccCceEEEECCccHHHHHHHHHHHHH---hCCC-----CEEEEeCCCcHhHHHHHHHcCCe-
Confidence 334445555544332 45 899999999999999765421 4567 99999999998876655544432
Q ss_pred cccccCCCCCCCceeccC----C---CHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEE
Q 017259 95 EAIRGFGPLLPGHLKVDF----G---DITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIA 167 (374)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~----~---d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~ 167 (374)
+..+++ + |++++++.+++++++++++++++++|++|.+. +.+.+++|.++|++||+++|+
T Consensus 167 ------------~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~v~i~~p~NPtG~~~-~~~~l~~i~~~~~~~~~~li~ 233 (420)
T 4f4e_A 167 ------------VVAYPYYDAKTNGVNFDGMLAALNGYEPGTIVVLHACCHNPTGVDL-NDAQWAQVVEVVKARRLVPFL 233 (420)
T ss_dssp ------------EEEEECEETTTTEECHHHHHHHHTTCCTTCEEEEECSSCTTTCCCC-CHHHHHHHHHHHHHHTCEEEE
T ss_pred ------------EEEeeeeccccCccCHHHHHHHHHhCCCCCEEEEeCCCCCCCCCCC-CHHHHHHHHHHHHHCCcEEEE
Confidence 222222 1 79999999987666889999999999999877 899999999999999999999
Q ss_pred eccccCCccccc--Ccccc-cCCCCCc---EEEeccccc-CCccchhhhee---CHHHHhh----cCCCCCCCCCCCCHH
Q 017259 168 DEIQSGLARSGR--MLASD-WEEVRPD---MVILGKALG-GGVIPVSAVLA---DKEVMLC----IQPGEHGSTFGGNPL 233 (374)
Q Consensus 168 Dea~~~~~~~g~--~~~~~-~~~~~~d---~~s~sK~~~-~G~~~~G~~~~---~~~~~~~----~~~~~~~~~~~~~~~ 233 (374)
||+|+++.+.+. ..... ..+..++ +.|+||.++ .|+ |+||+++ ++++++. +.......+.+.+.+
T Consensus 234 De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~-RiG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (420)
T 4f4e_A 234 DIAYQGFGESIEADAAAVRLFAAANLNVFVSSSFSKSFSLYGE-RVGALSIITDSKDEAARVLSQLKRVIRTNYSNPPTH 312 (420)
T ss_dssp EESCTTSSSCTTGGGHHHHHHHHTTCCEEEEEECTTTTTCGGG-CEEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCSH
T ss_pred ccccccccCCcchhhHHHHHHHhcCCCEEEEEeCCccCcCcCC-CcEEEEEEcCCHHHHHHHHHHHHHHHhcccCCCCHH
Confidence 999998865431 11111 1112222 348999999 699 9999753 4554433 221111233445677
Q ss_pred HHHHHHHHHHHHh------h--hcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCchhHHHHHHH
Q 017259 234 ASAVAIASLDVIR------D--EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLK 305 (374)
Q Consensus 234 ~~~aa~~al~~~~------~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 305 (374)
++.++.++++... + +++.++++++++.+.+.|+++... +++....+..|.+.|+.+ +...+.+.
T Consensus 313 ~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~-~~~~~~~~~~g~~~~~~~-------~~~~~~~~ 384 (420)
T 4f4e_A 313 GGAIVAAVLASPELRASWVQELGEMRDRIRAMRNGLVERLKAAGIE-RDFSFINAQRGMFSYSGL-------TSAQVDRL 384 (420)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCS-SCCTHHHHSCSSEEECCC-------CHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-CCceeECCCccEEEEeCC-------CHHHHHHH
Confidence 7777666655321 1 244566666666666666654211 011111223455555433 34567777
Q ss_pred HHHCCeEeccCCCCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 017259 306 MKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVLE 346 (374)
Q Consensus 306 l~~~Gi~v~~~~~~~lRi~~~~~~~~e~i~~~~~~l~~~~~ 346 (374)
|.++||.+.+.. |++++ ..+++++++++++|+++++
T Consensus 385 l~~~gI~v~~~~----Ris~~-~~~~~~i~~~~~~l~~~l~ 420 (420)
T 4f4e_A 385 REEFGIYAVSTG----RICVA-ALNTRNLDVVANAIAAVLK 420 (420)
T ss_dssp HHHHCEECCTTS----EEEGG-GCCTTTHHHHHHHHHHHHC
T ss_pred HHhCCEEecCCC----eEEEe-cCCHHHHHHHHHHHHHHhC
Confidence 778899999864 99975 3377789999999998763
No 130
>3cai_A Possible aminotransferase; RV3778C; 1.80A {Mycobacterium tuberculosis}
Probab=99.95 E-value=3.1e-26 Score=215.97 Aligned_cols=285 Identities=14% Similarity=0.049 Sum_probs=196.8
Q ss_pred CCcHHHHHHHHhcccCCC--eEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccCCcccc
Q 017259 20 NDKFPVFAERLTSMFGYD--MVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAI 97 (374)
Q Consensus 20 ~~~~~~l~~~l~~~~~~~--~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~ 97 (374)
.+...++++++++++|.+ ++++++|++++++.+++++... ..+| |+|++.+++|++.......+....+.
T Consensus 68 ~~~~~~l~~~la~~~g~~~~~v~~~~g~t~al~~~~~~l~~~--~~~g-----d~vi~~~~~~~~~~~~~~~~~~~~g~- 139 (406)
T 3cai_A 68 AAVLDAAREAVADLVNADPGGVVLGADRAVLLSLLAEASSSR--AGLG-----YEVIVSRLDDEANIAPWLRAAHRYGA- 139 (406)
T ss_dssp HHHHHHHHHHHHHHHTCCGGGEEEESCHHHHHHHHHHHTGGG--GBTT-----CEEEEETTSCGGGTHHHHHHHHHHBC-
T ss_pred HHHHHHHHHHHHHHhCCCCCeEEEeCChHHHHHHHHHHHhhc--cCCC-----CEEEEcCCccHHHHHHHHHHHHhcCC-
Confidence 456788999999988765 8999999999999988876211 3566 99999999998765443332100011
Q ss_pred ccCCCCCCCceeccC------CCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEeccc
Q 017259 98 RGFGPLLPGHLKVDF------GDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQ 171 (374)
Q Consensus 98 ~~~~~~~~~~~~~~~------~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~ 171 (374)
.+..++. -|+++|+++++ ++++++++++++|++|.+.+ +++|.++|++||++||+||+|
T Consensus 140 --------~v~~v~~~~~~~~~d~~~l~~~l~---~~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~D~a~ 204 (406)
T 3cai_A 140 --------KVKWAEVDIETGELPTWQWESLIS---KSTRLVAVNSASGTLGGVTD----LRAMTKLVHDVGALVVVDHSA 204 (406)
T ss_dssp --------EEEEECCCTTTCCCCGGGHHHHCC---TTEEEEEEESBCTTTCBBCC----CHHHHHHHHHTTCEEEEECTT
T ss_pred --------eEEEEecCcccCCcCHHHHHHHhC---CCceEEEEeCCcCCccccCC----HHHHHHHHHHcCCEEEEEccc
Confidence 1111222 17889988886 57999999999999999998 999999999999999999999
Q ss_pred cCCcccccCcccccCCCCCcEE--EecccccCCccchh-hheeCHHHHhhcCCCCCC---------CCCCCCHHHHHHHH
Q 017259 172 SGLARSGRMLASDWEEVRPDMV--ILGKALGGGVIPVS-AVLADKEVMLCIQPGEHG---------STFGGNPLASAVAI 239 (374)
Q Consensus 172 ~~~~~~g~~~~~~~~~~~~d~~--s~sK~~~~G~~~~G-~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~aa~ 239 (374)
+. +.. .+....+ .+|++ |++|.+++ ++| ++++++++.+.+.+.... ...+.+..+++++.
T Consensus 205 ~~-g~~--~~~~~~~--~~d~~~~s~~K~~g~---~~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~t~~~~~~~a~~ 276 (406)
T 3cai_A 205 AA-PYR--LLDIRET--DADVVTVNAHAWGGP---PIGAMVFRDPSVMNSFGSVSTNPYATGPARLEIGVHQFGLLAGVV 276 (406)
T ss_dssp TT-TTC--CCCHHHH--CCSEEEEEGGGGTSC---SCEEEEESCHHHHHTSCCCCSCTTCCGGGGGCCSCCCHHHHHHHH
T ss_pred cc-CCC--CCCchhc--CCCEEEeehhhhcCC---CcCeEEEEehHHHhhcCCcccCCCCCccccccCCCccHHHHHHHH
Confidence 72 111 1122222 34655 67797653 478 888999988887754321 13345777777777
Q ss_pred HHHHHHhh-----------------hcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEE--EEeeeEEEEeccCCCchhHH
Q 017259 240 ASLDVIRD-----------------EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVR--GRGLFNAVEFDKTALPVSAY 300 (374)
Q Consensus 240 ~al~~~~~-----------------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~--~~g~~~~~~~~~~~~~~~~~ 300 (374)
++++.+.. +++.++++++.+++.+.|++ +|++....+ ..+.++++.++.. +..
T Consensus 277 ~al~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~----~~~~~~~~~~~~~~~~~~~~~~~~----~~~ 348 (406)
T 3cai_A 277 ASIEYLAALDESARGSRRERLAVSMQSADAYLNRVFDYLMVSLRS----LPLVMLIGRPEAQIPVVSFAVHKV----PAD 348 (406)
T ss_dssp HHHHHHHTSSTTCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHT----CTTEEECCCCSSBCSEEEEEETTB----CHH
T ss_pred HHHHHHHHhccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHhc----CCCeEEcCCccccCCEEEEEECCc----CHH
Confidence 78877654 23344445555555555543 332211111 1244677777642 578
Q ss_pred HHHHHHHHCCeEeccCC-------------CCEEEEecCCCCCHHHHHHHHHHHHH
Q 017259 301 DICLKMKERGILAKPTH-------------DTIVRLTPPLSISSNELQEGSKALHD 343 (374)
Q Consensus 301 ~~~~~l~~~Gi~v~~~~-------------~~~lRi~~~~~~~~e~i~~~~~~l~~ 343 (374)
++.+.|.++||.++++. .+++|++++..++++++++++++|++
T Consensus 349 ~~~~~L~~~gi~v~~g~~~~~~~~~g~~~~~~~iRis~~~~~t~e~i~~~~~~l~~ 404 (406)
T 3cai_A 349 RVVQRLADNGILAIANTGSRVLDVLGVNDVGGAVTVGLAHYSTMAEVDQLVRALAS 404 (406)
T ss_dssp HHHHHHHHTTEECEECCSCHHHHHHTTTTTTCCEEEECCTTCCHHHHHHHHHHHHT
T ss_pred HHHHHHHHCCcEEecCChHHHHHHcCCCCCCCeEEEEeecCCCHHHHHHHHHHHHH
Confidence 89999999999998753 37899999988899999999998864
No 131
>3f6t_A Aspartate aminotransferase; YP_194538.1, STRU genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: LLP; 2.15A {Lactobacillus acidophilus ncfm}
Probab=99.95 E-value=1.2e-26 Score=225.90 Aligned_cols=308 Identities=11% Similarity=0.072 Sum_probs=195.2
Q ss_pred CCcHHHHHHHHhccc-C------CCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccC
Q 017259 20 NDKFPVFAERLTSMF-G------YDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSC 92 (374)
Q Consensus 20 ~~~~~~l~~~l~~~~-~------~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~ 92 (374)
.++.+.+++.+.+.. + .+++++|+|+++|+..++..+......++| |+|++..|+|+++.......+.
T Consensus 141 ~~lr~~ia~~l~~~~~~~~~~~~~~~i~~t~G~t~al~~~~~~l~~~~l~~~g-----d~Viv~~p~~~~~~~~~~~~g~ 215 (533)
T 3f6t_A 141 VNTEKIINYFLQELSYKDANLAEQTDLFPTEGGTAAIVYAFHSLAENHLLKKG-----DKIAINEPIFTPYLRIPELKDY 215 (533)
T ss_dssp HHHHHHHHHHHHHHHTTTCCCGGGEEEEEEEHHHHHHHHHHHHHHHTTSSCTT-----CEEEEESSCCHHHHTSGGGGGS
T ss_pred HHHHHHHHHHHHHhcCCCCCCCCcceEEEECCHHHHHHHHHHHhhhhhccCCc-----CEEEEcCCCcHHHHHHHHHcCC
Confidence 334445555554441 2 268999999999999999985433336778 9999999999887655544332
Q ss_pred CccccccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHH-hcCCEEEEeccc
Q 017259 93 DNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCS-KYNILMIADEIQ 171 (374)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~-~~~i~li~Dea~ 171 (374)
.........+...+... |+++|+++++ ++++++++++++|++|.+. +.+.+++|+++|+ +||++||+||+|
T Consensus 216 ~~~~v~~~~~~~~~~~~----d~~~l~~~l~---~~~k~v~l~~p~NPtG~~~-~~~~l~~l~~la~~~~~~~li~De~y 287 (533)
T 3f6t_A 216 ELVEVDLHSYEKNDWEI----EPNEIEKLKD---PSIKALIVVNPTNPTSKEF-DTNALNAIKQAVEKNPKLMIISDEVY 287 (533)
T ss_dssp EEEEECCCEETTTTSEE----CHHHHHHHSC---TTEEEEEEESSCTTTCBCC-CHHHHHHHHHHHHHCTTCEEEEECTT
T ss_pred eEEEEEecCCcccCCCC----CHHHHHHHhC---CCCeEEEEeCCCCCCcccc-CHHHHHHHHHHHHhCCCCEEEEcCCc
Confidence 21111000000000111 7899998876 5799999988889999877 7888999999999 699999999999
Q ss_pred cCCcccccCcccccCCCCCcEEEeccccc-CCccchhhheeCHH-----HHhhc--------------------------
Q 017259 172 SGLARSGRMLASDWEEVRPDMVILGKALG-GGVIPVSAVLADKE-----VMLCI-------------------------- 219 (374)
Q Consensus 172 ~~~~~~g~~~~~~~~~~~~d~~s~sK~~~-~G~~~~G~~~~~~~-----~~~~~-------------------------- 219 (374)
+++.+.+..+.....+....+.||||.++ .|+ |+||++++++ +++.+
T Consensus 288 ~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~-RiG~l~~~~~~~~~~li~~l~~~~~~~~~~~~~~~~~~p~~~~~i~ 366 (533)
T 3f6t_A 288 GAFVPNFKSIYSVVPYNTMLVYSYSKLFGCTGW-RLGVIALNEKNVFDDNIAHLDKVELRQLHKRYSSVVLDPDKMKFID 366 (533)
T ss_dssp GGGSTTCCCHHHHSGGGEEEEEESHHHHTCGGG-CEEEEEEESSCHHHHHHHTSCHHHHHHHHHHHHTTCSCGGGCCHHH
T ss_pred cccccCccCHhhcCCCCEEEEecCcccCCCccc-ceEEEEECcHHHHHHHHHhcchhhHHHHHhhhhccccCcchhhhHH
Confidence 98754332221111122234559999998 799 9999988766 44433
Q ss_pred ------CCCCCCCCCCCCHHHHHH----HHHHHHH----Hhhh----cHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEE
Q 017259 220 ------QPGEHGSTFGGNPLASAV----AIASLDV----IRDE----KLAERSAHLGEELRQHLFKIQQQFPNYVKEVRG 281 (374)
Q Consensus 220 ------~~~~~~~~~~~~~~~~~a----a~~al~~----~~~~----~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 281 (374)
.......+.+.+.+.+.+ +.+++.. -..+ ...++++++.+.+.+.|. + +.....+.
T Consensus 367 rl~~~~~~~~~~~~~~~~~~~q~a~a~~a~~~L~~~~g~~~~~~~~~~~~~~~~~r~~~l~~~L~-----~-~~~~~~~~ 440 (533)
T 3f6t_A 367 RLCADSRSIGLYHTAGLSTPQQIMEALFSMTHLLTSTNGGSDDPYIDIARKLVSERYDQLHDAMQ-----A-PKDETDTN 440 (533)
T ss_dssp HHHHHHTTTTTGGGCSCCHHHHHHHHHHHHHHHTTCBGGGTBCHHHHHHHHHHHHHHHHHHHHHT-----C-CCCCSTTB
T ss_pred HHHHHHHHHHHhcccCCChHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHHhcC-----C-CccccCCC
Confidence 333344455667777776 3344420 0011 233444444444444442 2 22222234
Q ss_pred EeeeEEEEeccCCC---c----------hhHHHHHHHHH-HCCeEeccCC-----CCEEEEecCCCCCHHHHHHHHHHHH
Q 017259 282 RGLFNAVEFDKTAL---P----------VSAYDICLKMK-ERGILAKPTH-----DTIVRLTPPLSISSNELQEGSKALH 342 (374)
Q Consensus 282 ~g~~~~~~~~~~~~---~----------~~~~~~~~~l~-~~Gi~v~~~~-----~~~lRi~~~~~~~~e~i~~~~~~l~ 342 (374)
.+.++|+.++.... + .+..+++..++ ++||.+.|+. .+++|+++. ..+++++++++++|+
T Consensus 441 ~g~~~~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~ll~~~GV~v~pg~~f~~~~~~iRls~a-~~~~e~i~~~i~~L~ 519 (533)
T 3f6t_A 441 THYYSLIDIYRLAEKIYGKEFRDYLTNNFEQVDFLLKLAEKNGVVLVDGVGFGAKPGELRVSQA-NLPTEDYALIGKQVL 519 (533)
T ss_dssp CCSEEEEEHHHHHHHHHCHHHHHHHHHHCCHHHHHHHHHHHTTSSSCTTEEECSSTTEEEEESS-SSCHHHHHHHHHHHH
T ss_pred ceEEEEEehHhhhhhccchHHHHHhhccCCHHHHHHHHHHhCCEEEeCCcccCCCCCEEEEEEe-eCCHHHHHHHHHHHH
Confidence 56667776643000 0 03446666665 6799998863 689999964 358999999999999
Q ss_pred HHHhccC
Q 017259 343 DVLELDL 349 (374)
Q Consensus 343 ~~~~~~~ 349 (374)
++++ ++
T Consensus 520 ~~l~-~~ 525 (533)
T 3f6t_A 520 ELLK-EY 525 (533)
T ss_dssp HHHH-HH
T ss_pred HHHH-HH
Confidence 9987 54
No 132
>1iug_A Putative aspartate aminotransferase; wild type, pyridoxal-5'-phosphate form, riken structural genomics/proteomics initiative, RSGI; HET: LLP; 2.20A {Thermus thermophilus} SCOP: c.67.1.3
Probab=99.95 E-value=8.3e-27 Score=215.43 Aligned_cols=287 Identities=15% Similarity=0.039 Sum_probs=202.5
Q ss_pred CcHHHHHHHHhcccCCC--eEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccc--cCCccc
Q 017259 21 DKFPVFAERLTSMFGYD--MVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISM--SCDNEA 96 (374)
Q Consensus 21 ~~~~~l~~~l~~~~~~~--~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~--~~~~~~ 96 (374)
+...++++++++++|.+ ++++++||++|++.+++.+ .++| |+|++.+++|++.. ....+ .+....
T Consensus 34 ~~~~~l~~~la~~~g~~~~~i~~~~g~t~a~~~~~~~~-----~~~g-----d~vl~~~~~~~~~~-~~~~~~~~g~~~~ 102 (352)
T 1iug_A 34 EVFLKARGLLREAFRTEGEVLILTGSGTLAMEALVKNL-----FAPG-----ERVLVPVYGKFSER-FYEIALEAGLVVE 102 (352)
T ss_dssp HHHHHHHHHHHHHHTCSSEEEEEESCHHHHHHHHHHHH-----CCTT-----CEEEEEECSHHHHH-HHHHHHHTTCEEE
T ss_pred HHHHHHHHHHHHHhCCCCceEEEcCchHHHHHHHHHhc-----cCCC-----CeEEEEeCCchhHH-HHHHHHHcCCceE
Confidence 34678999999988765 8999999999999999988 4567 99999999988864 21111 111100
Q ss_pred cccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhc--CCEEEEeccccCC
Q 017259 97 IRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKY--NILMIADEIQSGL 174 (374)
Q Consensus 97 ~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~--~i~li~Dea~~~~ 174 (374)
. .+...+. ..|++++++ ++++++++++++|++|.+.+ +++|.++|++| |+++|+||+|+ +
T Consensus 103 ~---v~~~~~~----~~d~~~l~~------~~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~~~li~D~a~~-~ 164 (352)
T 1iug_A 103 R---LDYPYGD----TPRPEDVAK------EGYAGLLLVHSETSTGALAD----LPALARAFKEKNPEGLVGADMVTS-L 164 (352)
T ss_dssp E---EECCTTC----CCCTTTSCC------SSCSEEEEESEETTTTEECC----HHHHHHHHHHHCTTCEEEEECTTT-B
T ss_pred E---EeCCCCC----CCCHHHHhc------cCCcEEEEEEecCCcceecC----HHHHHHHHHhhCCCCEEEEECCcc-c
Confidence 0 0110100 014555544 36788999999999999998 99999999999 99999999997 3
Q ss_pred cccccCcccccCCCCCcEE--EecccccCCccchhhheeCHHHHhhcCC-------------C-CCCCCCCCCHHHHHHH
Q 017259 175 ARSGRMLASDWEEVRPDMV--ILGKALGGGVIPVSAVLADKEVMLCIQP-------------G-EHGSTFGGNPLASAVA 238 (374)
Q Consensus 175 ~~~g~~~~~~~~~~~~d~~--s~sK~~~~G~~~~G~~~~~~~~~~~~~~-------------~-~~~~~~~~~~~~~~aa 238 (374)
+.. .+.... ..+|++ |+||++.++. ++|++++++++.+.+.. . .....++.+..++.++
T Consensus 165 ~~~--~~~~~~--~~~d~~~~s~~K~~~~~~-g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 239 (352)
T 1iug_A 165 LVG--EVALEA--MGVDAAASGSQKGLMCPP-GLGFVALSPRALERLKPRGYYLDLARELKAQKEGESAWTPAINLVLAV 239 (352)
T ss_dssp TTB--CCCSGG--GTCSEEEEESSSTTCCCS-CEEEEEECHHHHHTCCCCSSTTCHHHHHHHHTTTCCSSCCCHHHHHHH
T ss_pred cCc--ceeccc--cCeeEEEecCcccccCCC-ceeEEEECHHHHHHhhCCCceeeHHHHHhhcccCCCCCCCCHHHHHHH
Confidence 221 112121 235655 6679888766 78999998887655321 0 1223456688888888
Q ss_pred HHHHHHHhhh--cHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCchhHHHHHHHHHHCCeEeccC
Q 017259 239 IASLDVIRDE--KLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPT 316 (374)
Q Consensus 239 ~~al~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~ 316 (374)
.++++.+.+. ++.++++++++++.+.|+++ .+ .+... ...+.++++.+++.. +..++.+.|.++||.++++
T Consensus 240 ~~al~~~~~~~~~~~~~~~~~~~~l~~~L~~~--g~-~~~~~-~~~~~~~~~~~~~~~---~~~~~~~~l~~~gi~v~~~ 312 (352)
T 1iug_A 240 AAVLEEVLPRLEEHLALKAWQNALLYGVGEEG--GL-RPVPK-RFSPAVAAFYLPEGV---PYARVKEAFAQRGAVIAGG 312 (352)
T ss_dssp HHHHHHHGGGHHHHHHHHHHHHHHHHHHHHHT--TC-EESCS-SBCTTCEEEECCTTC---CHHHHHHHHHTTTEECEEC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--CC-ccccc-ccCCeEEEEEcCCCC---CHHHHHHHHHHCCEEEEeC
Confidence 8888876543 56677777777777777664 11 11111 125678888876432 6788999999999999886
Q ss_pred C----CCEEEEecCCCCCHHHHHHHHHHHHHHHhccC
Q 017259 317 H----DTIVRLTPPLSISSNELQEGSKALHDVLELDL 349 (374)
Q Consensus 317 ~----~~~lRi~~~~~~~~e~i~~~~~~l~~~~~~~~ 349 (374)
. .+++|++++...+++++++++++|+++++ ++
T Consensus 313 ~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~-~~ 348 (352)
T 1iug_A 313 QGPLKGKVFRLSLMGAYDRYEALGVAGMFREVLE-EI 348 (352)
T ss_dssp CGGGTTTEEEECCCSSCCHHHHHHHHHHHHHHHH-HH
T ss_pred CCccCCCEEEEEccccCCHHHHHHHHHHHHHHHH-Hh
Confidence 3 58999999888899999999999999987 54
No 133
>1eg5_A Aminotransferase; PLP-dependent enzymes, iron-sulfur-cluster synthesis, C-S BE transferase; HET: PLP; 2.00A {Thermotoga maritima} SCOP: c.67.1.3 PDB: 1ecx_A*
Probab=99.95 E-value=3.5e-26 Score=213.69 Aligned_cols=294 Identities=16% Similarity=0.120 Sum_probs=203.3
Q ss_pred CcHHHHHHHHhcccCCC--eEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCccccccc--ccCCccc
Q 017259 21 DKFPVFAERLTSMFGYD--MVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAIS--MSCDNEA 96 (374)
Q Consensus 21 ~~~~~l~~~l~~~~~~~--~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~--~~~~~~~ 96 (374)
+...++++++++++|.+ ++++++||++|++.+++++..+. ..+| |+|++.+++|++....... ..+....
T Consensus 44 ~~~~~l~~~la~~~g~~~~~v~~~~g~t~a~~~~~~~~~~~~-~~~g-----d~vl~~~~~~~~~~~~~~~~~~~g~~~~ 117 (384)
T 1eg5_A 44 LHMEKAREKVAKVLGVSPSEIFFTSCATESINWILKTVAETF-EKRK-----RTIITTPIEHKAVLETMKYLSMKGFKVK 117 (384)
T ss_dssp HHHHHHHHHHHHHHTSCGGGEEEESCHHHHHHHHHHHHHHHT-TTTC-----CEEEECTTSCHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHHHHHcCCCCCeEEEECCHHHHHHHHHHhhhhhc-cCCC-----CEEEECCCCchHHHHHHHHHHhcCCEEE
Confidence 44678999999988765 89999999999999999985211 1456 9999999999876444321 1111111
Q ss_pred cccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcC--CEEEEeccccCC
Q 017259 97 IRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYN--ILMIADEIQSGL 174 (374)
Q Consensus 97 ~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~--i~li~Dea~~~~ 174 (374)
+.+...+. ..|+++|+++++ ++++++++++++|++|.+.+ +++|.++|++|| ++||+||+|+ +
T Consensus 118 ---~v~~~~~~----~~d~~~l~~~i~---~~~~~v~~~~~~nptG~~~~----~~~i~~l~~~~~~~~~li~Dea~~-~ 182 (384)
T 1eg5_A 118 ---YVPVDSRG----VVKLEELEKLVD---EDTFLVSIMAANNEVGTIQP----VEDVTRIVKKKNKETLVHVDAVQT-I 182 (384)
T ss_dssp ---ECCBCTTS----CBCHHHHHHHCC---TTEEEEEEESBCTTTCBBCC----HHHHHHHHHHHCTTCEEEEECTTT-T
T ss_pred ---EEccCCCC----ccCHHHHHHHhC---CCCeEEEEECCCCCcccccC----HHHHHHHHHhcCCceEEEEEhhhh-c
Confidence 11111111 127899998887 47999999999999999998 999999999999 9999999997 4
Q ss_pred cccccCcccccCCCCCcEE--EecccccCCccchhhheeCHHH--HhhcCCCC---CCCCCCCCHHHHHHHHHHHHHHhh
Q 017259 175 ARSGRMLASDWEEVRPDMV--ILGKALGGGVIPVSAVLADKEV--MLCIQPGE---HGSTFGGNPLASAVAIASLDVIRD 247 (374)
Q Consensus 175 ~~~g~~~~~~~~~~~~d~~--s~sK~~~~G~~~~G~~~~~~~~--~~~~~~~~---~~~~~~~~~~~~~aa~~al~~~~~ 247 (374)
+.. .+... ...+|++ |+||.++. . ++|++++++++ ...+.... ...+++.+.+++.++.++++.+.+
T Consensus 183 ~~~--~~~~~--~~~~di~~~s~sK~~g~-~-G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~ 256 (384)
T 1eg5_A 183 GKI--PFSLE--KLEVDYASFSAHKFHGP-K-GVGITYIRKGVPIRPLIHGGGQERGLRSGTQNVPGIVGAARAMEIAVE 256 (384)
T ss_dssp TTS--CCCCT--TTCCSEEEEEGGGGTSC-T-TCEEEEECTTSCCCCSBCSSCTTTTTBCSCCCHHHHHHHHHHHHHHHH
T ss_pred CCc--ccCch--hcCCCEEEecHHHhcCC-C-ceEEEEEcCCCccccccccCcccccccCCCCChHHHHHHHHHHHHHHH
Confidence 321 11222 2346766 45598653 1 25888888775 22332211 124557788999988888887533
Q ss_pred --hcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEE---EEeeeEEEEeccCCCchhHHHHHHHHHHCCeEeccCC-----
Q 017259 248 --EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVR---GRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTH----- 317 (374)
Q Consensus 248 --~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~---~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~----- 317 (374)
+++.++++++.+++.+.|++. ++..... ..+.++++.++.. +..++.+.|.++||.++++.
T Consensus 257 ~~~~~~~~~~~~~~~l~~~L~~~-----g~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~l~~~gi~v~~g~~~~~~ 327 (384)
T 1eg5_A 257 ELSEAAKHMEKLRSKLVSGLMNL-----GAHIITPLEISLPNTLSVSFPNI----RGSTLQNLLSGYGIYVSTSSACTSK 327 (384)
T ss_dssp THHHHHHHHHHHHHHHHHHHHTT-----TCEECSCTTSBCTTEEEEECTTC----CHHHHHHHHHHTTEECBC-------
T ss_pred hHHHHHHHHHHHHHHHHHHhCCC-----CeEEeCCcccCCCCEEEEEeCCC----CHHHHHHHHhhCCeEEeccccccCC
Confidence 355667777777777777652 2211111 1345666666543 57889999999999998742
Q ss_pred ------------------CCEEEEecCCCCCHHHHHHHHHHHHHHHhccCCc
Q 017259 318 ------------------DTIVRLTPPLSISSNELQEGSKALHDVLELDLPK 351 (374)
Q Consensus 318 ------------------~~~lRi~~~~~~~~e~i~~~~~~l~~~~~~~~~~ 351 (374)
.+++||+++...+++++++++++|+++++ ++.+
T Consensus 328 ~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~-~~~~ 378 (384)
T 1eg5_A 328 DERLRHVLDAMGVDRRIAQGAIRISLCKYNTEEEVDYFLKKIEEILS-FLDL 378 (384)
T ss_dssp -----CHHHHTTCCHHHHHHEEEEECCTTCCHHHHHHHHHHHHHHHH-HC--
T ss_pred CCcchHHHHHcCCChhhcCCeEEEECCCCCCHHHHHHHHHHHHHHHH-HHHh
Confidence 36899998887899999999999999998 7643
No 134
>2z9v_A Aspartate aminotransferase; pyridoxamine, pyruvate; HET: PXM; 1.70A {Mesorhizobium loti} PDB: 2z9u_A* 2z9w_A* 2z9x_A*
Probab=99.95 E-value=2.9e-26 Score=215.04 Aligned_cols=289 Identities=13% Similarity=0.129 Sum_probs=207.2
Q ss_pred CcHHHHHHHHhcccCC--CeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccc-cccCCcccc
Q 017259 21 DKFPVFAERLTSMFGY--DMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAI-SMSCDNEAI 97 (374)
Q Consensus 21 ~~~~~l~~~l~~~~~~--~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~-~~~~~~~~~ 97 (374)
+...+++++++++++. +++++|+||++|++.+++.+ .++| |+|++.+++|++...... ...+.
T Consensus 42 ~~~~~l~~~la~~~g~~~~~v~~t~g~t~a~~~~~~~~-----~~~g-----d~Vl~~~~~~~~~~~~~~~~~~g~---- 107 (392)
T 2z9v_A 42 LLYEKVVDKAQKAMRLSNKPVILHGEPVLGLEAAAASL-----ISPD-----DVVLNLASGVYGKGFGYWAKRYSP---- 107 (392)
T ss_dssp HHHHHHHHHHHHHTTCSSCCEEESSCTHHHHHHHHHHH-----CCTT-----CCEEEEESSHHHHHHHHHHHHHCS----
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEeCCchHHHHHHHHHh-----cCCC-----CEEEEecCCcccHHHHHHHHHcCC----
Confidence 3467899999998875 58999999999999999988 4567 999999999987631111 10111
Q ss_pred ccCCCCCCCceeccC-----CCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEecccc
Q 017259 98 RGFGPLLPGHLKVDF-----GDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQS 172 (374)
Q Consensus 98 ~~~~~~~~~~~~~~~-----~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~ 172 (374)
.+..++. .|++++++++++. ++++++++++++|++|.+.+ +++|.++|++||+++|+||+|+
T Consensus 108 --------~~~~v~~~~~~~~d~~~l~~~l~~~-~~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~D~a~~ 174 (392)
T 2z9v_A 108 --------HLLEIEVPYNEAIDPQAVADMLKAH-PEITVVSVCHHDTPSGTINP----IDAIGALVSAHGAYLIVDAVSS 174 (392)
T ss_dssp --------CEEEEECCTTSCCCHHHHHHHHHHC-TTCCEEEEESEEGGGTEECC----HHHHHHHHHHTTCEEEEECTTT
T ss_pred --------ceEEeeCCCCCCCCHHHHHHHHhcC-CCCcEEEEeccCCCCceecc----HHHHHHHHHHcCCeEEEEcccc
Confidence 1111221 2799999999753 46789999999999999998 9999999999999999999997
Q ss_pred CCcccccCcccccCCCCCcEE--EecccccCCccchhhheeCHHHHhhcCCCC--------------------CCCCCCC
Q 017259 173 GLARSGRMLASDWEEVRPDMV--ILGKALGGGVIPVSAVLADKEVMLCIQPGE--------------------HGSTFGG 230 (374)
Q Consensus 173 ~~~~~g~~~~~~~~~~~~d~~--s~sK~~~~G~~~~G~~~~~~~~~~~~~~~~--------------------~~~~~~~ 230 (374)
++.. .+... ...+|++ |+||+++++. ++|++++++++.+.++... ....++.
T Consensus 175 -~g~~--~~~~~--~~~~d~~~~s~sK~~~~~~-g~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (392)
T 2z9v_A 175 -FGGM--KTHPE--DCKADIYVTGPNKCLGAPP-GLTMMGVSERAWAKMKANPLAPRASMLSIVDWENAWSRDKPFPFTP 248 (392)
T ss_dssp -BTTB--SCCGG--GGTCSEEEECSSSTTCCCS-CCEEEEECHHHHHHHHTCTTSCCSSTTCSGGGTTTTSTTSCCSSCC
T ss_pred -cCCc--ccccc--cccceEEEecCcccccCCC-ceeEEEECHHHHHHhhhccCCCCceeccHHHHHhhhcccCCCCCCC
Confidence 3211 11222 2235655 5679888776 7799999988877664210 1123355
Q ss_pred CHHHHHHHHHHHHHHhhh---cHHHHHHHHHHHHHHHHHHHHHhCCCcee-e-EEEEeeeEEEEeccCCCchhHHHHHHH
Q 017259 231 NPLASAVAIASLDVIRDE---KLAERSAHLGEELRQHLFKIQQQFPNYVK-E-VRGRGLFNAVEFDKTALPVSAYDICLK 305 (374)
Q Consensus 231 ~~~~~~aa~~al~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~-~~~~g~~~~~~~~~~~~~~~~~~~~~~ 305 (374)
+..+++++.++++.+.+. ++.++++++.+++.+.|+++ .+ .+.. . ....+.++++.++... +..++.+.
T Consensus 249 ~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~--g~-~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~~~ 322 (392)
T 2z9v_A 249 SVSEINGLDVALDLYLNEGPEAVWARHALTAKAMRAGVTAM--GL-SVWAASDSIASPTTTAVRTPDGV---DEKALRQA 322 (392)
T ss_dssp CHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT--TC-CBSSSSGGGBCTTEEEEECCTTC---CHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHc--CC-eeccCCccccCCceEEEECCCCC---CHHHHHHH
Confidence 777777777788776443 45677778888888888765 22 1221 1 0124667777775433 67889999
Q ss_pred HHHC-CeEeccCC----CCEEEEec-CCCCCHHHHHHHHHHHHHHHhccC
Q 017259 306 MKER-GILAKPTH----DTIVRLTP-PLSISSNELQEGSKALHDVLELDL 349 (374)
Q Consensus 306 l~~~-Gi~v~~~~----~~~lRi~~-~~~~~~e~i~~~~~~l~~~~~~~~ 349 (374)
|.++ ||.++++. .+++|+++ +...+++++++++++|+++++ ++
T Consensus 323 L~~~~gi~v~~g~~~~~~~~lRi~~~~~~~~~~~i~~~~~~l~~~~~-~~ 371 (392)
T 2z9v_A 323 ARARYGVVFSSGRGETLGKLTRIGHMGPTAQPIYAIAALTALGGAMN-AA 371 (392)
T ss_dssp HHHHHCEECEECCGGGTTTEEEEECCGGGCSHHHHHHHHHHHHHHHH-HT
T ss_pred HHhcCCEEEecCCCCCCCCeEEEeCcccccCHHHHHHHHHHHHHHHH-Hc
Confidence 9998 99998863 68999995 437899999999999999998 65
No 135
>2ch1_A 3-hydroxykynurenine transaminase; PLP-enzyme, kynurenine pathway, transferase; HET: LLP; 2.4A {Anopheles gambiae} SCOP: c.67.1.3 PDB: 2ch2_A*
Probab=99.95 E-value=2.6e-26 Score=215.68 Aligned_cols=295 Identities=13% Similarity=0.122 Sum_probs=208.5
Q ss_pred CcHHHHHHHHhcccCCC---eEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCccc--ccccccCCcc
Q 017259 21 DKFPVFAERLTSMFGYD---MVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTL--AAISMSCDNE 95 (374)
Q Consensus 21 ~~~~~l~~~l~~~~~~~---~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~--~~~~~~~~~~ 95 (374)
+...++++.++++++.+ ++++++||++|++.+++++ ..+| |+|++.+++|++... .+...+....
T Consensus 51 ~~~~~l~~~la~~~~~~~~~~v~~~~g~t~al~~~~~~~-----~~~g-----d~vl~~~~~~~~~~~~~~~~~~g~~~~ 120 (396)
T 2ch1_A 51 RTMDEVKDGLRYIFQTENRATMCVSGSAHAGMEAMLSNL-----LEEG-----DRVLIAVNGIWAERAVEMSERYGADVR 120 (396)
T ss_dssp HHHHHHHHHHHHHHTCCCSCEEEESSCHHHHHHHHHHHH-----CCTT-----CEEEEEESSHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHHHHHhCCCCCcEEEECCcHHHHHHHHHHHh-----cCCC-----CeEEEEcCCcccHHHHHHHHHcCCceE
Confidence 34778999999988654 6999999999999999988 5567 999999999988631 1111111111
Q ss_pred ccccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEeccccCCc
Q 017259 96 AIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLA 175 (374)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~~~~ 175 (374)
.. +...+. ..|+++++++++++ +++++++++++|++|.+.+ +++|.++|++||++||+||+|+ ++
T Consensus 121 ~v----~~~~~~----~~d~~~l~~~l~~~--~~~~v~~~~~~nptG~~~~----~~~i~~l~~~~~~~li~Dea~~-~g 185 (396)
T 2ch1_A 121 TI----EGPPDR----PFSLETLARAIELH--QPKCLFLTHGDSSSGLLQP----LEGVGQICHQHDCLLIVDAVAS-LC 185 (396)
T ss_dssp EE----ECCTTS----CCCHHHHHHHHHHH--CCSEEEEESEETTTTEECC----CTTHHHHHHHTTCEEEEECTTT-BT
T ss_pred Ee----cCCCCC----CCCHHHHHHHHHhC--CCCEEEEECCCCCCceecC----HHHHHHHHHHcCCEEEEEcccc-cc
Confidence 10 100000 13899999999853 5788899999999999997 9999999999999999999997 43
Q ss_pred ccccCcccccCCCCCcEEE--ecccccCCccchhhheeCHHHHhhcCCCC-----------------------CCCCCCC
Q 017259 176 RSGRMLASDWEEVRPDMVI--LGKALGGGVIPVSAVLADKEVMLCIQPGE-----------------------HGSTFGG 230 (374)
Q Consensus 176 ~~g~~~~~~~~~~~~d~~s--~sK~~~~G~~~~G~~~~~~~~~~~~~~~~-----------------------~~~~~~~ 230 (374)
.. .+. .....+|+++ ++|.++++. ++|+++.++++++.+.... ....++.
T Consensus 186 ~~--~~~--~~~~~~d~~~~s~~K~~~~~~-g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (396)
T 2ch1_A 186 GV--PFY--MDKWEIDAVYTGAQKVLGAPP-GITPISISPKALDVIRNRRTKSKVFYWDLLLLGNYWGCYDEPKRYHHTV 260 (396)
T ss_dssp TB--CCC--TTTTTCCEEECCCC-CCCCCS-SCEEEEECHHHHHHHHTCSSCCSCGGGCHHHHHHHTTCSSSCCCCCCCC
T ss_pred CC--ccc--hhhcCcCEEEEcCCccccCCC-CeEEEEECHHHHHhhhhccCcccceEechHHHHHhhhhhcccCCCCCCC
Confidence 21 112 2223467665 459998776 7889888888777653210 1122356
Q ss_pred CHHHHHHHHHHHHHHhhh---cHHHHHHHHHHHHHHHHHHHHHhCCCceeeE--EEEeeeEEEEeccCCCchhHHHHHHH
Q 017259 231 NPLASAVAIASLDVIRDE---KLAERSAHLGEELRQHLFKIQQQFPNYVKEV--RGRGLFNAVEFDKTALPVSAYDICLK 305 (374)
Q Consensus 231 ~~~~~~aa~~al~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~--~~~g~~~~~~~~~~~~~~~~~~~~~~ 305 (374)
+..++.++.++++.+.++ ++.++++++++++.+.|++++ + .+.... ...+.++++.++... +..++.+.
T Consensus 261 ~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g--~-~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~ 334 (396)
T 2ch1_A 261 ASNLIFALREALAQIAEEGLENQIKRRIECAQILYEGLGKMG--L-DIFVKDPRHRLPTVTGIMIPKGV---DWWKVSQY 334 (396)
T ss_dssp CHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHT--C-CBSSCSGGGBCTTEEEEECCTTC---CHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHCC--C-eeccCCccccCCceEEEEcCCCC---CHHHHHHH
Confidence 778888888888876433 567778888888888887762 2 122111 112346777775433 67899999
Q ss_pred HHHC-CeEeccC----CCCEEEEec-CCCCCHHHHHHHHHHHHHHHhccCCcC
Q 017259 306 MKER-GILAKPT----HDTIVRLTP-PLSISSNELQEGSKALHDVLELDLPKM 352 (374)
Q Consensus 306 l~~~-Gi~v~~~----~~~~lRi~~-~~~~~~e~i~~~~~~l~~~~~~~~~~~ 352 (374)
|.++ ||.++++ ..+++||++ ++..+++++++++++|+++++ ++...
T Consensus 335 L~~~~gi~v~~g~~~~~~~~iRi~~~~~~~~~e~i~~~~~~l~~~l~-~~~~~ 386 (396)
T 2ch1_A 335 AMNNFSLEVQGGLGPTFGKAWRVGIMGECSTVQKIQFYLYGFKESLK-ATHPD 386 (396)
T ss_dssp HHHHHCBCCBCCCGGGTTTEEEEECCGGGCSHHHHHHHHHHHHHHHH-HHCTT
T ss_pred HHHhCCEEEecCccccCCCEEEEECCCCcCCHHHHHHHHHHHHHHHH-HhCcc
Confidence 9876 9999875 368999998 566799999999999999998 76433
No 136
>1yaa_A Aspartate aminotransferase; HET: PLP; 2.05A {Saccharomyces cerevisiae} SCOP: c.67.1.1
Probab=99.94 E-value=1.3e-26 Score=219.19 Aligned_cols=298 Identities=13% Similarity=0.106 Sum_probs=196.1
Q ss_pred CCcHHHHHHHHhccc-C-------CCeEEe--cCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCccccccc
Q 017259 20 NDKFPVFAERLTSMF-G-------YDMVLP--MNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAIS 89 (374)
Q Consensus 20 ~~~~~~l~~~l~~~~-~-------~~~~~~--~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~ 89 (374)
.....++++.+++++ + .+++++ |+||++|++.+++++.. ..+| |+|++..|+|+++...+..
T Consensus 72 ~~g~~~lr~~ia~~~~~~~~~~~~~~~i~~~~t~g~~~a~~~~~~~~~~---~~~g-----d~Vl~~~p~~~~~~~~~~~ 143 (412)
T 1yaa_A 72 ITGLPSLTSNAAKIIFGTQSDALQEDRVISVQSLSGTGALHISAKFFSK---FFPD-----KLVYLSKPTWANHMAIFEN 143 (412)
T ss_dssp TTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHHHHHH---HCTT-----CCEEEEESCCTTHHHHHHT
T ss_pred CCCcHHHHHHHHHHHhcCCCCCCCcceEEEEeccchHhHHHHHHHHHHH---hCCC-----CEEEEeCCCCccHHHHHHH
Confidence 444566666666654 2 578999 99999999998665542 2466 9999999999987665544
Q ss_pred ccCCccccccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEec
Q 017259 90 MSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADE 169 (374)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~De 169 (374)
.+..........+ .+.. .|+++++++++++++.++++++.+++|++|.+. +.+.+++|.++|++||+++|+||
T Consensus 144 ~g~~~~~v~~~~~--~~~~----~d~~~l~~~l~~~~~~~~~~~~~~p~nPtG~~~-~~~~l~~l~~~~~~~~~~li~De 216 (412)
T 1yaa_A 144 QGLKTATYPYWAN--ETKS----LDLNGFLNAIQKAPEGSIFVLHSCAHNPTGLDP-TSEQWVQIVDAIASKNHIALFDT 216 (412)
T ss_dssp TTCCEEEEECEET--TTTE----ECHHHHHHHHHHSCTTCEEEEECSSCTTTCCCC-CHHHHHHHHHHHHHTTCEEEEEE
T ss_pred cCceEEEEeeecC--CCCc----cCHHHHHHHHHhCCCCCEEEEeCCCCCCCCCCC-CHHHHHHHHHHHHHCCCEEEEec
Confidence 3322111100000 0011 179999999986533466676688889999776 79999999999999999999999
Q ss_pred cccCCcccc---cCccc-ccCCCCC---c---EEEecccccC-Cccchhhhe--e-----CHH----HHhhcCCCCCCCC
Q 017259 170 IQSGLARSG---RMLAS-DWEEVRP---D---MVILGKALGG-GVIPVSAVL--A-----DKE----VMLCIQPGEHGST 227 (374)
Q Consensus 170 a~~~~~~~g---~~~~~-~~~~~~~---d---~~s~sK~~~~-G~~~~G~~~--~-----~~~----~~~~~~~~~~~~~ 227 (374)
+|+++.+.+ ..... ......+ + +.|+||.+++ |+ |+||++ + +++ +.+.+........
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~Gl-riG~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 295 (412)
T 1yaa_A 217 AYQGFATGDLDKDAYAVRLGVEKLSTVSPVFVCQSFAKNAGMYGE-RVGCFHLALTKQAQNKTIKPAVTSQLAKIIRSEV 295 (412)
T ss_dssp SCTTTSSSCHHHHTHHHHHHHHHTTTTCCEEEEEECTTTSCCGGG-CEEEEEEECCSCTTHHHHHHHHHHHHHHHHHTTT
T ss_pred ccccccCCcccchhHHHHHHHhcCCCCcceEEEeccCCCCCCcCC-cceEEEEEecCCCCCHHHHHHHHHHHHHHHhhcc
Confidence 999876543 22122 1111122 2 3489999997 99 999987 6 555 6666654222334
Q ss_pred CCCCHHHHHHHHHHHHHHh--------hhcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCchhH
Q 017259 228 FGGNPLASAVAIASLDVIR--------DEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSA 299 (374)
Q Consensus 228 ~~~~~~~~~aa~~al~~~~--------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 299 (374)
..++.+++.++.++++... .++..++++++++++.+.|++..... ++....+..+.+.|+.+ +.
T Consensus 296 ~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~-~~~~~~~~~~~~~~~~~-------~~ 367 (412)
T 1yaa_A 296 SNPPAYGAKIVAKLLETPELTEQWHKDMVTMSSRITKMRHALRDHLVKLGTPG-NWDHIVNQCGMFSFTGL-------TP 367 (412)
T ss_dssp SSCCHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSS-CCTHHHHCCSSEEECCC-------CH
T ss_pred CCCChHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCC-CeeeeccCceEEEeeCC-------CH
Confidence 4558899998888887542 12455666667777777776653100 01111122234444322 24
Q ss_pred HHHHHHHHHCCeEeccCCCCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 017259 300 YDICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVLE 346 (374)
Q Consensus 300 ~~~~~~l~~~Gi~v~~~~~~~lRi~~~~~~~~e~i~~~~~~l~~~~~ 346 (374)
..+...+.++||.+.+ ++||+++. .+++++++++++|+++++
T Consensus 368 ~~~~~~l~~~gi~v~~----~~Ris~~~-~~~~~i~~~~~~l~~~~~ 409 (412)
T 1yaa_A 368 QMVKRLEETHAVYLVA----SGRASIAG-LNQGNVEYVAKAIDEVVR 409 (412)
T ss_dssp HHHHHHHHHHCEECCT----TSEEEGGG-CCTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCEEecc----CcEEEEcc-CCHhHHHHHHHHHHHHHH
Confidence 4564445578999987 47999774 489999999999999987
No 137
>1e5e_A MGL, methionine gamma-lyase; methionine biosynthesis, PLP-dependent enzymes, C-S gamma lyase; HET: PPJ; 2.18A {Trichomonas vaginalis} SCOP: c.67.1.3 PDB: 1e5f_A*
Probab=99.94 E-value=4.1e-26 Score=214.99 Aligned_cols=289 Identities=11% Similarity=0.060 Sum_probs=199.4
Q ss_pred CCCCcHHHHHHHHhcccCCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccCCcccc
Q 017259 18 FYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAI 97 (374)
Q Consensus 18 ~~~~~~~~l~~~l~~~~~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~ 97 (374)
...+..+++++.+++++|.+++++++||++|+..+++.+ .++| |+|++..|.|++..........
T Consensus 59 ~~~~~~~~l~~~ia~~~g~~~~i~~~~g~~ai~~~~~~l-----~~~g-----d~Vl~~~~~y~~~~~~~~~~~~----- 123 (404)
T 1e5e_A 59 LGNPTVSNLEGKIAFLEKTEACVATSSGMGAIAATVLTI-----LKAG-----DHLISDECLYGCTHALFEHALT----- 123 (404)
T ss_dssp TCCHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHH-----CCTT-----CEEEEESCCCHHHHHHHHTHHH-----
T ss_pred CcChHHHHHHHHHHHHhCCCcEEEeCChHHHHHHHHHHH-----hCCC-----CEEEEeCCCchhHHHHHHHHHH-----
Confidence 446677799999999999889999999999999999887 5667 9999999999775442110000
Q ss_pred ccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHh-cCCEEEEeccccCCcc
Q 017259 98 RGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSK-YNILMIADEIQSGLAR 176 (374)
Q Consensus 98 ~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~-~~i~li~Dea~~~~~~ 176 (374)
.....+..++.+|+++++++++ ++++++++++++|++|.+.+ +++|.++|++ ||+++|+||+|+++..
T Consensus 124 ----~~g~~~~~v~~~d~~~l~~~i~---~~t~~v~l~~p~NptG~v~~----l~~i~~la~~~~~~~li~De~~~~~~~ 192 (404)
T 1e5e_A 124 ----KFGIQVDFINTAIPGEVKKHMK---PNTKIVYFETPANPTLKIID----MERVCKDAHSQEGVLVIADNTFCSPMI 192 (404)
T ss_dssp ----HTTCEEEEECTTSTTHHHHHCC---TTEEEEEEESSCTTTCCCCC----HHHHHHHHHTSTTCEEEEECTTTCTTT
T ss_pred ----HcCCEEEEECCCCHHHHHHhcC---CCCcEEEEECCCCCCCcccC----HHHHHHHHHhhcCCEEEEECCCchhhh
Confidence 0012345556668899998887 57999999999999999997 9999999999 9999999999996532
Q ss_pred cccCcccccCCCCCcEEEecccccC-Cccch-hhheeCHHHHh-hcCCCCCCC-CCCCCHHHHHHHHHHHHHHhhhcHHH
Q 017259 177 SGRMLASDWEEVRPDMVILGKALGG-GVIPV-SAVLADKEVML-CIQPGEHGS-TFGGNPLASAVAIASLDVIRDEKLAE 252 (374)
Q Consensus 177 ~g~~~~~~~~~~~~d~~s~sK~~~~-G~~~~-G~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~aa~~al~~~~~~~~~~ 252 (374)
. .++ . ++.+..+.|+||.+++ |+ |+ |++++++++++ .+....... ....+++.+.++.++++.+ +...+
T Consensus 193 ~-~~~--~-~~~di~~~S~sK~~~~~g~-ri~G~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~~~~~l~~~--~~~~~ 265 (404)
T 1e5e_A 193 T-NPV--D-FGVDVVVHSATKYINGHTD-VVAGLICGKADLLQQIRMVGIKDITGSVISPHDAWLITRGLSTL--NIRMK 265 (404)
T ss_dssp C-CGG--G-GTCSEEEEETTTTTTCSSC-CCCEEEEECHHHHHHHHHTCCCCCCCCCCCHHHHHHHHHHHTTH--HHHHH
T ss_pred C-Ccc--c-cCCEEEEEcCccccCCCCC-CeEEEEEECHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHhHhHH--HHHHH
Confidence 2 121 1 2322223488999985 77 97 99999998877 776544443 4567888888888877643 12344
Q ss_pred HHHHHHHHHHHHHHHHH----HhCCCc-----ee----eEEEEeeeEEEEeccCCCchhHHHHHHHHHHCCeEeccC---
Q 017259 253 RSAHLGEELRQHLFKIQ----QQFPNY-----VK----EVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPT--- 316 (374)
Q Consensus 253 ~~~~~~~~~~~~l~~~~----~~~~~~-----~~----~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~--- 316 (374)
+...+.+.+.+.+++.. ..++.. .. ..++.+.++.|.+++ ...++.+.+.+.||++...
T Consensus 266 ~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~~~~g~~~~~~~~~-----~~~~~~~~l~~~~i~~~~~s~G 340 (404)
T 1e5e_A 266 AESENAMKVAEYLKSHPAVEKVYYPGFEDHEGHDIAKKQMRMYGSMITFILKS-----GFEGAKKLLDNLKLITLAVSLG 340 (404)
T ss_dssp HHHHHHHHHHHHHHTCTTEEEEECTTCSSSTTHHHHHHHCSSCCSEEEEEETT-----HHHHHHHHHHTCSSSEESSCCC
T ss_pred HHHHHHHHHHHHHHhCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEeCC-----CHHHHHHHHHhCCCceeccCCC
Confidence 44555555555554431 001100 00 012347788877753 2344556666778744321
Q ss_pred -------------------------C--CCEEEEecCCCCCHHHHHHHHHHHHHHHhccC
Q 017259 317 -------------------------H--DTIVRLTPPLSISSNELQEGSKALHDVLELDL 349 (374)
Q Consensus 317 -------------------------~--~~~lRi~~~~~~~~e~i~~~~~~l~~~~~~~~ 349 (374)
+ .+++|++++. |+++++++.|+++++ .+
T Consensus 341 ~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRis~g~----e~~~~li~~l~~al~-~~ 395 (404)
T 1e5e_A 341 GCESLIQHPASMTHAVVPKEEREAAGITDGMIRLSVGI----EDADELIADFKQGLD-AL 395 (404)
T ss_dssp SSSCEEECGGGTTTTTSCHHHHHHTTCCTTEEEEECCS----SCHHHHHHHHHHHHH-HH
T ss_pred CcceeeecccccccccCCHHHHHhcCCCCCeEEEEeCC----CCHHHHHHHHHHHHH-HH
Confidence 1 4799999665 788999999988887 43
No 138
>1cs1_A CGS, protein (cystathionine gamma-synthase); lyase, LLP-dependent enzymes, methionine biosynthesis; HET: LLP DHD; 1.50A {Escherichia coli} SCOP: c.67.1.3
Probab=99.94 E-value=4.1e-26 Score=213.88 Aligned_cols=293 Identities=15% Similarity=0.140 Sum_probs=202.7
Q ss_pred ccCcCCCCCcHHHHHHHHhcccCCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccC
Q 017259 13 LSSRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSC 92 (374)
Q Consensus 13 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~ 92 (374)
+..+.++++...+++++|+++++.++.++++||++|++.+++.+ .++| |+|++..++||+..........
T Consensus 44 ~~~~~~~~~~~~~l~~~la~~~~~~~~i~~~sGt~a~~~~~~~~-----~~~g-----~~vl~~~~~~~~~~~~~~~~~~ 113 (386)
T 1cs1_A 44 HDYSRRGNPTRDVVQRALAELEGGAGAVLTNTGMSAIHLVTTVF-----LKPG-----DLLVAPHDCYGGSYRLFDSLAK 113 (386)
T ss_dssp CSBTTTCCHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHH-----CCTT-----CEEEEETTCCHHHHHHHHHHHT
T ss_pred cceeCCCCccHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHH-----hCCC-----CEEEEecCCcHhHHHHHHHHHH
Confidence 33445667788999999999998777777788899999999988 4566 9999999999874332211111
Q ss_pred CccccccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEecccc
Q 017259 93 DNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQS 172 (374)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~ 172 (374)
. ....+..++.+|+++++++++ ++++++++++++|++|.+.+ +++|.++|++||+++|+||+|+
T Consensus 114 ~---------~g~~~~~~~~~d~~~l~~~i~---~~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~De~~~ 177 (386)
T 1cs1_A 114 R---------GCYRVLFVDQGDEQALRAALA---EKPKLVLVESPSNPLLRVVD----IAKICHLAREVGAVSVVDNTFL 177 (386)
T ss_dssp T---------TSCEEEEECTTCHHHHHHHHH---TCCSEEEEECSCTTTCCCCC----HHHHHHHHHHTTCEEEEECTTT
T ss_pred h---------cCCEEEEeCCCCHHHHHHhhc---cCCcEEEEeCCCCCCCcccC----HHHHHHHHHHcCCEEEEECCCc
Confidence 0 113345556679999999998 47889999999999999998 9999999999999999999999
Q ss_pred CCcccccCcccccCCCCCcEE--EecccccC-Cccch-hhheeCH-HHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHhh
Q 017259 173 GLARSGRMLASDWEEVRPDMV--ILGKALGG-GVIPV-SAVLADK-EVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRD 247 (374)
Q Consensus 173 ~~~~~g~~~~~~~~~~~~d~~--s~sK~~~~-G~~~~-G~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~aa~~al~~~~~ 247 (374)
++... .. . ...+|++ |++|.+++ |. ++ |++++++ ++.+.+.......+...+++++.++.++++.+.
T Consensus 178 ~~~~~-~~--~---~~~~di~~~s~sK~~~~~~~-~~~G~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~- 249 (386)
T 1cs1_A 178 SPALQ-NP--L---ALGADLVLHSCTKYLNGHSD-VVAGVVIAKDPDVVTELAWWANNIGVTGGAFDSYLLLRGLRTLV- 249 (386)
T ss_dssp CTTTC-CG--G---GGTCSEEEEETTTTTTCSSC-CCCEEEEESSHHHHHHHHHHHHHHTCBCCHHHHHHHHHHHTTHH-
T ss_pred ccccC-Cc--c---ccCceEEEEcCcccccCCCC-ceeEEEEeCcHHHHHHHHHHHHhcCCCCCHHHHHHHHhcccHHH-
Confidence 66332 11 1 1234544 88999985 55 66 8888875 777777654333345568888777776665432
Q ss_pred hcHHHHHHHHHHHHHHHHHHHHHh----CCCcee---------eEEEEeeeEEEEeccCCCchhHHHHHHHHHHCCeEec
Q 017259 248 EKLAERSAHLGEELRQHLFKIQQQ----FPNYVK---------EVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAK 314 (374)
Q Consensus 248 ~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~---------~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~ 314 (374)
...++..++.+++.+.++++... ++.... ..++.+.++.+.+++ ...++.+.|.++||.++
T Consensus 250 -~~~~~~~~~~~~l~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~l~~~gi~~~ 323 (386)
T 1cs1_A 250 -PRMELAQRNAQAIVKYLQTQPLVKKLYHPSLPENQGHEIAARQQKGFGAMLSFELDG-----DEQTLRRFLGGLSLFTL 323 (386)
T ss_dssp -HHHHHHHHHHHHHHHHHTTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEESS-----CHHHHHHHHHTCSSSEE
T ss_pred -HHHHHHHHHHHHHHHHHhcCCCeEEEECCCCCCCccHHHHHHhcCCCceEEEEEECC-----CHHHHHHHHHhCCcceE
Confidence 23445555566665555442100 010000 012347788887753 25678888888999886
Q ss_pred c---C---------------------------CCCEEEEecCCCCCHHHHHHHHHHHHHHH
Q 017259 315 P---T---------------------------HDTIVRLTPPLSISSNELQEGSKALHDVL 345 (374)
Q Consensus 315 ~---~---------------------------~~~~lRi~~~~~~~~e~i~~~~~~l~~~~ 345 (374)
. + ..+++|++++...++++++.+.++|+++.
T Consensus 324 ~~~~g~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRis~~~~~~~~~i~~l~~al~~~~ 384 (386)
T 1cs1_A 324 AESLGGVESLISHAATMTHAGMAPEARAAAGISETLLRISTGIEDGEDLIADLENGFRAAN 384 (386)
T ss_dssp BSCCCSSSCEEEEGGGTTTTTSCHHHHHHHTCCTTEEEEECCSSCHHHHHHHHHHHHHHHT
T ss_pred cccCCCcceeeecccccccccCCHHHHHhcCCCCCeEEEEEccCCHHHHHHHHHHHHHHhh
Confidence 3 1 14799999998777888887777776553
No 139
>2huf_A Alanine glyoxylate aminotransferase; alpha and beta protein, PLP-dependent transferase; HET: LLP; 1.75A {Aedes aegypti} PDB: 2hui_A* 2huu_A*
Probab=99.94 E-value=5.2e-26 Score=213.43 Aligned_cols=294 Identities=12% Similarity=0.107 Sum_probs=203.7
Q ss_pred CCcHHHHHHHHhcccCCC---eEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccc-cccCCcc
Q 017259 20 NDKFPVFAERLTSMFGYD---MVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAI-SMSCDNE 95 (374)
Q Consensus 20 ~~~~~~l~~~l~~~~~~~---~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~-~~~~~~~ 95 (374)
.+...++++++++++|.+ ++++++||++|++.+++.+ ..+| |+|++.+++|++...... ...+...
T Consensus 51 ~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~-----~~~g-----d~vl~~~~~~~~~~~~~~~~~~g~~~ 120 (393)
T 2huf_A 51 LKIMDDIKEGVRYLFQTNNIATFCLSASGHGGMEATLCNL-----LEDG-----DVILIGHTGHWGDRSADMATRYGADV 120 (393)
T ss_dssp HHHHHHHHHHHHHHHTCCCSEEEEESSCHHHHHHHHHHHH-----CCTT-----CEEEEEESSHHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHHHHHHHhCCCCCcEEEEcCcHHHHHHHHHHHH-----hCCC-----CEEEEECCCcchHHHHHHHHHcCCee
Confidence 456778999999988754 6899999999999999988 4567 999999999987421111 0011110
Q ss_pred ccccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEeccccCCc
Q 017259 96 AIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLA 175 (374)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~~~~ 175 (374)
.. .+...+. ..|++++++++++. +++++++++++|++|.+.+ +++|.++|++||+++|+||+|+ ++
T Consensus 121 ~~---v~~~~~~----~~d~~~l~~~i~~~--~~~~v~~~~~~nptG~~~~----l~~i~~~~~~~~~~li~D~a~~-~~ 186 (393)
T 2huf_A 121 RV---VKSKVGQ----SLSLDEIRDALLIH--KPSVLFLTQGDSSTGVLQG----LEGVGALCHQHNCLLIVDTVAS-LG 186 (393)
T ss_dssp EE---EECCTTC----CCCHHHHHHHHHHH--CCSEEEEESEETTTTEECC----CTTHHHHHHHTTCEEEEECTTT-BT
T ss_pred EE---EeCCCCC----CCCHHHHHHHHhcc--CCcEEEEEccCCCccccCC----HHHHHHHHHHcCCEEEEEcccc-cC
Confidence 00 0110110 13799999999842 5788999999999999987 9999999999999999999986 32
Q ss_pred ccccCcccccCCCCCcEE--EecccccCCccchhhheeCHHHHhhcCCCC----------------------CCCC-CCC
Q 017259 176 RSGRMLASDWEEVRPDMV--ILGKALGGGVIPVSAVLADKEVMLCIQPGE----------------------HGST-FGG 230 (374)
Q Consensus 176 ~~g~~~~~~~~~~~~d~~--s~sK~~~~G~~~~G~~~~~~~~~~~~~~~~----------------------~~~~-~~~ 230 (374)
.. .+... ...+|++ |+||+++|+. ++|++++++++.+.+.... .... .+.
T Consensus 187 ~~--~~~~~--~~~~d~~~~s~sK~l~g~~-G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (393)
T 2huf_A 187 GA--PMFMD--RWEIDAMYTGSQKVLGAPP-GITPVSFSHRAVERYKRRNTKVKVYYWDMSLVGDYWGCFGRPRIYHHTI 261 (393)
T ss_dssp TB--CCCTT--TTTCSEEECCSSSTTCCCS-SCEEEEECHHHHHHHHTCSSCCSCGGGCHHHHHHHTTCSSSCCCCSCCC
T ss_pred CC--Ccchh--hcCccEEEECCCcccccCC-CeEEEEECHHHHHHHhhcCCCCceEEEchHHHHhhhccccccCCCCCCC
Confidence 21 11211 2346766 4569987655 6689999988887765320 0111 244
Q ss_pred CHHHHHHHHHHHHHHhhh---cHHHHHHHHHHHHHHHHHHHHHhCCCceeeEE-EEeeeEEEEeccCCCchhHHHHHHHH
Q 017259 231 NPLASAVAIASLDVIRDE---KLAERSAHLGEELRQHLFKIQQQFPNYVKEVR-GRGLFNAVEFDKTALPVSAYDICLKM 306 (374)
Q Consensus 231 ~~~~~~aa~~al~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~l 306 (374)
+..+++++.++++.+.++ ++.++++++++++.+.|+++ .+ .+..... ..+.++++.++... +..++.+.|
T Consensus 262 ~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~--g~-~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~L 335 (393)
T 2huf_A 262 SSTLLYGLREAIAMACEEGLPALIARHEDCAKRLYRGLQDA--GF-ELYADPKDRLSTVTTIKVPQGV---DWLKAAQYA 335 (393)
T ss_dssp CHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT--TC-CBSSCGGGBCTTEEEEECCTTC---CHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHc--CC-eeccCccccCCcEEEEEcCCCC---CHHHHHHHH
Confidence 666777777788776432 46677778888888888765 22 1221110 12346777775332 578899999
Q ss_pred HHC-CeEeccC----CCCEEEEec-CCCCCHHHHHHHHHHHHHHHhccC
Q 017259 307 KER-GILAKPT----HDTIVRLTP-PLSISSNELQEGSKALHDVLELDL 349 (374)
Q Consensus 307 ~~~-Gi~v~~~----~~~~lRi~~-~~~~~~e~i~~~~~~l~~~~~~~~ 349 (374)
.++ ||.++++ ..+++||++ ++..+++++++++++|+++++ ++
T Consensus 336 ~~~~gi~v~~g~~~~~~~~~Ri~~~~~~~~~e~i~~~~~~l~~~~~-~~ 383 (393)
T 2huf_A 336 MKTYLVEISGGLGPTAGQVFRIGLMGQNATTERVDRVLQVFQEAVA-AV 383 (393)
T ss_dssp HHHHCEECBCCCGGGTTTEEEEECCGGGCSHHHHHHHHHHHHHHHH-HH
T ss_pred HHhCCEEEecCcccccCCEEEEEcccCcCCHHHHHHHHHHHHHHHH-Hc
Confidence 875 9999886 358999998 555689999999999999998 65
No 140
>3e9k_A Kynureninase; kynurenine-L-hydrolase, kynurenine hydrolase, pyridoxal-5'-phosphate, inhibitor complex, 3-hydroxy hippur hydroxyhippuric acid, PLP; HET: PLP 3XH; 1.70A {Homo sapiens} PDB: 2hzp_A*
Probab=99.94 E-value=9.5e-26 Score=216.56 Aligned_cols=302 Identities=17% Similarity=0.143 Sum_probs=211.6
Q ss_pred CcHHHHHHHHhcccCC--CeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccc----cCCc
Q 017259 21 DKFPVFAERLTSMFGY--DMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISM----SCDN 94 (374)
Q Consensus 21 ~~~~~l~~~l~~~~~~--~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~----~~~~ 94 (374)
+..+++++++++++|. +++++++|++++++.+++.+. ++| .++++|++..++||+........ +...
T Consensus 111 ~~~~~l~~~la~~~g~~~~~v~~t~g~t~al~~~~~~~~-----~~~--~~~~~Vl~~~~~~~s~~~~~~~~~~~~G~~~ 183 (465)
T 3e9k_A 111 TGDESIVGLMKDIVGANEKEIALMNALTVNLHLLMLSFF-----KPT--PKRYKILLEAKAFPSDHYAIESQLQLHGLNI 183 (465)
T ss_dssp GTTHHHHGGGHHHHTCCGGGEEECSCHHHHHHHHHHHHC-----CCC--SSSCEEEEETTCCHHHHHHHHHHHHHTTCCH
T ss_pred HhHHHHHHHHHHHcCCCcCCEEEECCHHHHHHHHHHHhc-----ccc--CCCCEEEEcCCcCCchHHHHHHHHHHcCCcc
Confidence 4557789999998875 489999999999999999883 333 12378999999998855433221 1111
Q ss_pred ccc-ccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEeccccC
Q 017259 95 EAI-RGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSG 173 (374)
Q Consensus 95 ~~~-~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~~ 173 (374)
... ....+...+.. -|+++++++|+++.++++++++++++|++|.+.+ +++|.++|++||+++|+|++|+.
T Consensus 184 ~~~~v~~~~~~~~~~----~d~~~l~~~i~~~~~~~~lv~~~~~~n~tG~~~~----l~~i~~la~~~g~~vi~D~a~~~ 255 (465)
T 3e9k_A 184 EESMRMIKPREGEET----LRIEDILEVIEKEGDSIAVILFSGVHFYTGQHFN----IPAITKAGQAKGCYVGFDLAHAV 255 (465)
T ss_dssp HHHEEEECCCTTCSS----CCHHHHHHHHHHHGGGEEEEEEESBCTTTCBBCC----HHHHHHHHHHTTCEEEEECTTTT
T ss_pred eeeeEEEecCCCCCc----cCHHHHHHHHHhcCCCeEEEEEeCcccCcceeec----HHHHHHHHHHcCCEEEEEhhhhc
Confidence 000 00011100010 1799999999866568999999999999999998 99999999999999999999972
Q ss_pred CcccccCcccccCCCCCcEE--Eeccccc-CCccchhhheeCHHHHhhcCCCCCC---------------C---------
Q 017259 174 LARSGRMLASDWEEVRPDMV--ILGKALG-GGVIPVSAVLADKEVMLCIQPGEHG---------------S--------- 226 (374)
Q Consensus 174 ~~~~g~~~~~~~~~~~~d~~--s~sK~~~-~G~~~~G~~~~~~~~~~~~~~~~~~---------------~--------- 226 (374)
. .. .+... ....|++ +++|.+. |+. ++|+++.++++.+.+.+...+ .
T Consensus 256 g-~~--~~~~~--~~~~D~~~~s~~K~l~~gp~-~~g~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (465)
T 3e9k_A 256 G-NV--ELYLH--DWGVDFACWCSYKYLNAGAG-GIAGAFIHEKHAHTIKPALVGWFGHELSTRFKMDNKLQLIPGVCGF 329 (465)
T ss_dssp T-TS--CCCHH--HHTCCEEEECSSSTTCCCTT-CCCEEEECGGGTTTSCCSSCCGGGBCHHHHTTCCSCCCBCSSGGGG
T ss_pred C-Cc--CCchh--hcCCCEEEECcccccccCCC-ceEEEEEcHHHHhhcCCcccCccCCCCCcccccCCCcCcCCChHHh
Confidence 1 11 11111 2345655 5669995 444 678999998887776543221 0
Q ss_pred -CCCCCHHHHHHHHHHHHHHhh---hcHHHHHHHHHHHHHHHHHHHHHh------CCCceee----EEEEeeeEEEEecc
Q 017259 227 -TFGGNPLASAVAIASLDVIRD---EKLAERSAHLGEELRQHLFKIQQQ------FPNYVKE----VRGRGLFNAVEFDK 292 (374)
Q Consensus 227 -~~~~~~~~~~aa~~al~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~------~~~~~~~----~~~~g~~~~~~~~~ 292 (374)
..+++.+++++..++++.+.+ +++.++.+++.+++.+.|++.... .+++... ....+.++++.++.
T Consensus 330 ~~gt~~~~~~~a~~aal~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~p~~~~~~g~~~~~~~~~ 409 (465)
T 3e9k_A 330 RISNPPILLVCSLHASLEIFKQATMKALRKKSVLLTGYLEYLIKHNYGKDKAATKKPVVNIITPSHVEERGCQLTITFSV 409 (465)
T ss_dssp CCSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCC---------CEEECSCSSGGGBCSCEEEEECC
T ss_pred ccCCccHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCeEEeCCCCHhhcccEEEEEecC
Confidence 115577788888888887655 356777777888888877764100 0122111 11247888888762
Q ss_pred CCCchhHHHHHHHHHHCCeEeccCCCCEEEEec-CCCCCHHHHHHHHHHHHHHHhccC
Q 017259 293 TALPVSAYDICLKMKERGILAKPTHDTIVRLTP-PLSISSNELQEGSKALHDVLELDL 349 (374)
Q Consensus 293 ~~~~~~~~~~~~~l~~~Gi~v~~~~~~~lRi~~-~~~~~~e~i~~~~~~l~~~~~~~~ 349 (374)
+..++.+.|.++||.++...++++|+++ +..++++|++++++.|+++++ +.
T Consensus 410 -----~~~~l~~~L~~~Gi~v~~~~~~~iRis~~~~~~t~edi~~~~~~l~~~l~-~~ 461 (465)
T 3e9k_A 410 -----PNKDVFQELEKRGVVCDKRNPNGIRVAPVPLYNSFHDVYKFTNLLTSILD-SA 461 (465)
T ss_dssp -----TTCCHHHHHHTTTEECEEETTTEEEEBCCTTTCCHHHHHHHHHHHHHHHT-C-
T ss_pred -----CHHHHHHHHHHCCEEEecCCCCEEEEeCcccCCCHHHHHHHHHHHHHHHH-hc
Confidence 4578999999999999877789999998 899999999999999999998 54
No 141
>3fsl_A Aromatic-amino-acid aminotransferase; tyrosine aminotransferase, pyridoxal phosphate, internal ALD schiff base, amino-acid biosynthesis; HET: PLR; 2.35A {Escherichia coli k-12} SCOP: c.67.1.1 PDB: 3tat_A*
Probab=99.94 E-value=2.8e-26 Score=215.59 Aligned_cols=288 Identities=13% Similarity=0.096 Sum_probs=190.2
Q ss_pred CcHHHHHHHHhccc--------CCC--eEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccc
Q 017259 21 DKFPVFAERLTSMF--------GYD--MVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISM 90 (374)
Q Consensus 21 ~~~~~l~~~l~~~~--------~~~--~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~ 90 (374)
....++++.+++++ ..+ ++++|+|+++|++.+++++.. ..+| |+|++..|+|+++...+...
T Consensus 70 ~g~~~lr~~la~~~~~~~~~~~~~~~~~i~~t~g~~~a~~~~~~~~~~---~~~g-----d~vl~~~p~~~~~~~~~~~~ 141 (397)
T 3fsl_A 70 EGLNCYRHAIAPLLFGADHPVLKQQRVATIQTLGGSGALKVGADFLKR---YFPE-----SGVWVSDPTWENHVAIFAGA 141 (397)
T ss_dssp TCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEESHHHHHHHHHHHHHHH---HCTT-----CCEEEESSCCHHHHHHHHHT
T ss_pred CchHHHHHHHHHHHhcCCcccccccceEEEEcCCcHHHHHHHHHHHHh---cCCC-----CeEEEeCCCchhHHHHHHHc
Confidence 33445555555543 256 899999999999999765431 4567 99999999998876555444
Q ss_pred cCCccccccCCCCCCCceeccC----C---CHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCC
Q 017259 91 SCDNEAIRGFGPLLPGHLKVDF----G---DITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNI 163 (374)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~----~---d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i 163 (374)
+.. +..+++ + |++++++++++++++++++++++++|++|.+. +.+.+++|.++|++||+
T Consensus 142 g~~-------------~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~v~~~~p~nptG~~~-~~~~l~~l~~~~~~~~~ 207 (397)
T 3fsl_A 142 GFE-------------VSTYPWYDEATNGVRFNDLLATLKTLQAGSIVLLHPCCHNPTGADL-TNDQWDAVIEILKAREL 207 (397)
T ss_dssp TCC-------------EEEECCEETTTTEECHHHHHHHHTTCCTTCEEEECSSSCTTTCCCC-CHHHHHHHHHHHHHTTC
T ss_pred CCc-------------eEEEeeeeccCCcCcHHHHHHHHHhCCCCCEEEEeCCCCCCCCcCC-CHHHHHHHHHHHHhCCE
Confidence 322 222332 2 79999999987656789999999999999877 78899999999999999
Q ss_pred EEEEeccccCCcccc--cCcccc----cCCCCCcEEEeccccc-CCccchhhhee---CHHHHhhcCCC----CCCCCCC
Q 017259 164 LMIADEIQSGLARSG--RMLASD----WEEVRPDMVILGKALG-GGVIPVSAVLA---DKEVMLCIQPG----EHGSTFG 229 (374)
Q Consensus 164 ~li~Dea~~~~~~~g--~~~~~~----~~~~~~d~~s~sK~~~-~G~~~~G~~~~---~~~~~~~~~~~----~~~~~~~ 229 (374)
++|+||+|+++.+.+ ...... ..+....+.|+||.++ +|+ |+||+++ ++++++.+... ....+..
T Consensus 208 ~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~-riG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (397)
T 3fsl_A 208 IPFLDIAYQGFGAGMEEDAYAIRAIASAGLPALVSNSFSKIFSLYGE-RVGGLSVMCEDAEAAGRVLGQLKATVRRNYSS 286 (397)
T ss_dssp EEEEEESCTTSSSCTTGGGHHHHHHHHTTCCEEEEEECTTTTTCGGG-CCEEEEEECSSHHHHHHHHHHHHHHHHTTTSS
T ss_pred EEEEecCchhhccCcccccHHHHHHHhcCCCEEEEecccccccCcCC-CeeEEEEecCCHHHHHHHHHHHHHHHHhccCC
Confidence 999999999876542 111111 1122222448999999 799 9999864 44544433211 1123334
Q ss_pred CCHHHHHHHHHHHHHH------h--hhcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCchhHHH
Q 017259 230 GNPLASAVAIASLDVI------R--DEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYD 301 (374)
Q Consensus 230 ~~~~~~~aa~~al~~~------~--~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 301 (374)
.+.+++.++.++++.. . .++..++++++++++.+.|++..... ++....+..+.+.|+.+ ....
T Consensus 287 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~-~~~~~~~~~~~~~~~~~-------~~~~ 358 (397)
T 3fsl_A 287 PPNFGAQVVAAVLNDEALKASWLKEVEEMRTRILAMRQELVKVLSTEMPER-NFDYLLNQRGMFSYTGL-------SAAQ 358 (397)
T ss_dssp CCSHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTS-CCTHHHHCCSSEEECCC-------CHHH
T ss_pred CCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC-CceeecCCceEEEecCC-------CHHH
Confidence 4667777666555421 1 12456667777777777776653110 11111122345555433 2455
Q ss_pred HHHHHHHCCeEeccCCCCEEEEecCCCCCHHHHHHHHHHHHHH
Q 017259 302 ICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDV 344 (374)
Q Consensus 302 ~~~~l~~~Gi~v~~~~~~~lRi~~~~~~~~e~i~~~~~~l~~~ 344 (374)
+.+.|.++||.+.+++ ||+++ ..+++++++++++|+++
T Consensus 359 ~~~~l~~~gi~v~~g~----Ris~~-~~~~~~i~~~~~~l~~~ 396 (397)
T 3fsl_A 359 VDRLREEFGVYLIASG----RMCVA-GLNTANVQRVAKAFAAV 396 (397)
T ss_dssp HHHHHHTTCEECCTTC----EEEGG-GCCTTTHHHHHHHHHHH
T ss_pred HHHHHHhCCEEECCCC----eEEEE-ecCHhhHHHHHHHHHhh
Confidence 6777778899999875 99875 33667899999999876
No 142
>1jg8_A L-ALLO-threonine aldolase; glycine biosynthesis, pyridoxal-5'- phosphate, calcium binding site, structural genomics, PSI; HET: LLP; 1.80A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1lw4_A* 1lw5_A* 1m6s_A* 2fm1_A*
Probab=99.94 E-value=7.4e-26 Score=208.87 Aligned_cols=295 Identities=15% Similarity=0.147 Sum_probs=200.1
Q ss_pred CCCCcHHHHHHHHhcccCCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccc--cccccC-Cc
Q 017259 18 FYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLA--AISMSC-DN 94 (374)
Q Consensus 18 ~~~~~~~~l~~~l~~~~~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~--~~~~~~-~~ 94 (374)
++.+...+++++|++++|.+.+++++||++|+..+++++ .++| |+|++.+|+|.+.... .....+ ..
T Consensus 35 ~~~~~~~~l~~~la~~~g~~~~~~~~~gt~a~~~~~~~~-----~~~g-----d~Vl~~~~~~~~~~~~~~~~~~~g~~~ 104 (347)
T 1jg8_A 35 GEDPTINELERLAAETFGKEAALFVPSGTMGNQVSIMAH-----TQRG-----DEVILEADSHIFWYEVGAMAVLSGVMP 104 (347)
T ss_dssp TCCHHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHH-----CCTT-----CEEEEETTCHHHHSSTTHHHHHTCCEE
T ss_pred CCChHHHHHHHHHHHHhCCceEEEecCcHHHHHHHHHHh-----cCCC-----CEEEEcCcchhhhccccchhhccCeEE
Confidence 446678899999999999999999999999999998877 5677 9999999997442221 111111 11
Q ss_pred cccccCCCCCCCceeccCCCHHHHHHHHHhc---CCcEEEEEEccccCCC-CcccCChhHHHHHHHHHHhcCCEEEEecc
Q 017259 95 EAIRGFGPLLPGHLKVDFGDITALEKIFKES---GDQIAGFLFEPIQGEA-GVIIPPDGYLKAVRDLCSKYNILMIADEI 170 (374)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~---~~~~~~vi~~~~~~~~-g~~~~~~~~l~~l~~l~~~~~i~li~Dea 170 (374)
... .. .+.. .|++++++++++. .++++++++++++|++ |.+. +.+.+++|.++|++||++||+||+
T Consensus 105 ~~v---~~--~~~~----~d~~~l~~~i~~~~~~~~~~~~v~~~~~~npt~G~~~-~~~~l~~i~~~a~~~~~~li~D~a 174 (347)
T 1jg8_A 105 HPV---PG--KNGA----MDPDDVRKAIRPRNIHFPRTSLIAIENTHNRSGGRVV-PLENIKEICTIAKEHGINVHIDGA 174 (347)
T ss_dssp EEE---CE--ETTE----ECHHHHHHHSCCSCTTSCCEEEEEEESSBTTTTSBCC-CHHHHHHHHHHHHHHTCEEEEEET
T ss_pred EEe---cC--CCCc----cCHHHHHHHhccccccccCceEEEEeccccccCCccC-cHHHHHHHHHHHHHCCCEEEeehh
Confidence 100 00 0010 1799999988742 1368999999999998 6555 788999999999999999999998
Q ss_pred ccC--CcccccCcccccCCCCCc--EEEecccccCCccchh-hheeCHHHHhhcCCC--CCCCCCCCCHHHHHHHHHHHH
Q 017259 171 QSG--LARSGRMLASDWEEVRPD--MVILGKALGGGVIPVS-AVLADKEVMLCIQPG--EHGSTFGGNPLASAVAIASLD 243 (374)
Q Consensus 171 ~~~--~~~~g~~~~~~~~~~~~d--~~s~sK~~~~G~~~~G-~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~aa~~al~ 243 (374)
|.. +...+.. ........| +.++||+++++ +| +++.++++++.+... ..+.+...+.+.++++..+++
T Consensus 175 ~~~~~~~~~~~~--~~~~~~~~d~~~~s~sK~l~~~---~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 249 (347)
T 1jg8_A 175 RIFNASIASGVP--VKEYAGYADSVMFCLSKGLCAP---VGSVVVGDRDFIERARKARKMLGGGMRQAGVLAAAGIIALT 249 (347)
T ss_dssp THHHHHHHHCCC--HHHHHHTCSEEEEESSSTTCCS---SCEEEEECHHHHHHHHHHHHHHTCCCSSTHHHHHHHHHHHH
T ss_pred hhhcchhhcCCC--hHHhcccccEEEEecccccCCC---ceEEEEcCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHH
Confidence 751 1111211 111111223 34789998743 45 466787777655321 122333445666666667776
Q ss_pred HHhhhcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEecc-CCCchhHHHHHHHHHHCCeEeccCCCCEEE
Q 017259 244 VIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDK-TALPVSAYDICLKMKERGILAKPTHDTIVR 322 (374)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~~l~~~Gi~v~~~~~~~lR 322 (374)
...+ . .++..++.+++.+.|+++ . + .+. ..+..+.++++.++. .. +..++.+.|.++||.+++.+.+++|
T Consensus 250 ~~~~-~-~~~~~~~~~~l~~~L~~~-~-~-~~~-~~~~~~~~~~~~~~~~~~---~~~~~~~~l~~~gi~v~~~~~~~iR 320 (347)
T 1jg8_A 250 KMVD-R-LKEDHENARFLALKLKEI-G-Y-SVN-PEDVKTNMVILRTDNLKV---NAHGFIEALRNSGVLANAVSDTEIR 320 (347)
T ss_dssp HSST-T-HHHHHHHHHHHHHHHHHH-T-C-BCC-GGGCCSSEEEEECTTSSS---CHHHHHHHHHHHTEECEEEETTEEE
T ss_pred HHHH-H-HHHHHHHHHHHHHHHHhc-C-c-eec-cCCCcceEEEEEcccccC---CHHHHHHHHHHCCCEEecCCCCeEE
Confidence 5322 2 344445678888888776 2 2 111 112356778887763 22 5789999999999999987778999
Q ss_pred EecCCCCCHHHHHHHHHHHHHHHh
Q 017259 323 LTPPLSISSNELQEGSKALHDVLE 346 (374)
Q Consensus 323 i~~~~~~~~e~i~~~~~~l~~~~~ 346 (374)
++++...+++++++++++|+++++
T Consensus 321 l~~~~~~~~e~i~~~~~~l~~~l~ 344 (347)
T 1jg8_A 321 LVTHKDVSRNDIEEALNIFEKLFR 344 (347)
T ss_dssp EECCTTSCHHHHHHHHHHHHHHHH
T ss_pred EEeCCCCCHHHHHHHHHHHHHHHH
Confidence 998888899999999999999887
No 143
>4hvk_A Probable cysteine desulfurase 2; transferase and ISCS, transferase; HET: PMP PG4; 1.43A {Archaeoglobus fulgidus} PDB: 4eb7_A* 4eb5_A*
Probab=99.94 E-value=1.1e-25 Score=209.92 Aligned_cols=290 Identities=15% Similarity=0.101 Sum_probs=197.1
Q ss_pred CCcHHHHHHHHhcccCCC--eEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccCCcccc
Q 017259 20 NDKFPVFAERLTSMFGYD--MVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAI 97 (374)
Q Consensus 20 ~~~~~~l~~~l~~~~~~~--~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~ 97 (374)
.+..++++++++++++.+ ++++++|+++|++.+++++.... .++| |+|++.+++|++.......+... +
T Consensus 42 ~~~~~~~~~~la~~~~~~~~~i~~~~g~~~a~~~~~~~~~~~~-~~~g-----d~vi~~~~~~~~~~~~~~~~~~~-g-- 112 (382)
T 4hvk_A 42 REAVQEAREKVAKLVNGGGGTVVFTSGATEANNLAIIGYAMRN-ARKG-----KHILVSAVEHMSVINPAKFLQKQ-G-- 112 (382)
T ss_dssp HHHHHHHHHHHHHHTTCTTEEEEEESSHHHHHHHHHHHHHHHH-GGGC-----CEEEEETTCCHHHHHHHHHHHHT-T--
T ss_pred HHHHHHHHHHHHHHcCCCcCeEEEECCchHHHHHHHHHhhhhh-cCCC-----CEEEECCCCcHHHHHHHHHHHhc-C--
Confidence 345668999999988764 79999999999999999885211 2567 99999999987765443332110 1
Q ss_pred ccCCCCCCCceeccCC-----CHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEecccc
Q 017259 98 RGFGPLLPGHLKVDFG-----DITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQS 172 (374)
Q Consensus 98 ~~~~~~~~~~~~~~~~-----d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~ 172 (374)
..+..++.+ |+++|+++++ ++++++++++++|++|.+.+ +++|.++|++||+ ||+|++|+
T Consensus 113 -------~~~~~v~~~~~~~~d~~~l~~~i~---~~~~~v~~~~~~nptG~~~~----~~~i~~l~~~~~~-li~D~a~~ 177 (382)
T 4hvk_A 113 -------FEVEYIPVGKYGEVDVSFIDQKLR---DDTILVSVQHANNEIGTIQP----VEEISEVLAGKAA-LHIDATAS 177 (382)
T ss_dssp -------CEEEEECBCTTSCBCHHHHHHHCC---TTEEEEECCSBCTTTCBBCC----HHHHHHHHSSSSE-EEEECTTT
T ss_pred -------CEEEEeccCCCCCcCHHHHHHHhc---cCceEEEEECCCCCceeeCC----HHHHHHHHHHcCE-EEEEhHHh
Confidence 111222221 7999999887 57899999999999999998 9999999999999 99999987
Q ss_pred CCcccccCcccccCCCCCcEE--EecccccCCccchhhheeCHHHHhhcCCCCC-------CCCCCCCHHHHHHHHHHHH
Q 017259 173 GLARSGRMLASDWEEVRPDMV--ILGKALGGGVIPVSAVLADKEVMLCIQPGEH-------GSTFGGNPLASAVAIASLD 243 (374)
Q Consensus 173 ~~~~~g~~~~~~~~~~~~d~~--s~sK~~~~G~~~~G~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~aa~~al~ 243 (374)
++.. .+..... ..|++ |++|.++ +. ++|+++.+++. .+.+... ......+..++.++.++++
T Consensus 178 -~~~~--~~~~~~~--~~d~~~~s~~K~~g-~~-g~g~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~ 248 (382)
T 4hvk_A 178 -VGQI--EVDVEKI--GADMLTISSNDIYG-PK-GVGALWIRKEA--KLQPVILGGGQENGLRSGSENVPSIVGFGKAAE 248 (382)
T ss_dssp -BTTB--CCCHHHH--TCSEEEEESGGGTS-CT-TCEEEEEETTC--CCCCSSCSSCTGGGTSCSCCCHHHHHHHHHHHH
T ss_pred -cCCC--CCCchhc--CCCEEEEeHHHhcC-CC-ceEEEEEcCcc--CcCcccccCCCcCccccCCcCHHHHHHHHHHHH
Confidence 2111 1111112 24554 6779654 33 56777776553 3332211 1133457777877778877
Q ss_pred HHhh--hcHHHHHHHHHHHHHHHHHHHHHhCCCceeeE---EEEeeeEEEEeccCCCchhHHHHHHHHHHCCeEeccCC-
Q 017259 244 VIRD--EKLAERSAHLGEELRQHLFKIQQQFPNYVKEV---RGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTH- 317 (374)
Q Consensus 244 ~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~---~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~- 317 (374)
.+.+ +++.++.+++.+++.+.|++ +|++.... ...+.++.+.++.. +..++.+.|.++||.++++.
T Consensus 249 ~~~~~~~~~~~~~~~~~~~l~~~L~~----~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~l~~~gi~v~~g~~ 320 (382)
T 4hvk_A 249 ITAMEWREEAERLRRLRDRIIDNVLK----IEESYLNGHPEKRLPNNVNVRFSYI----EGESIVLSLDMAGIQASTGSA 320 (382)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTT----STTEEECSCSSSBCTTEEEEEETTC----CHHHHHHHHHHTTCBCBCC--
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHhc----CCCeEEeCCccccCCCEEEEEECCC----CHHHHHHHHHHCCEEEeeCCc
Confidence 6543 24455555666666665543 32221111 11134666666543 67889999999999998753
Q ss_pred ----------------------CCEEEEecCCCCCHHHHHHHHHHHHHHHhccCCc
Q 017259 318 ----------------------DTIVRLTPPLSISSNELQEGSKALHDVLELDLPK 351 (374)
Q Consensus 318 ----------------------~~~lRi~~~~~~~~e~i~~~~~~l~~~~~~~~~~ 351 (374)
.+++|++++...+++++++++++|+++++ ++.+
T Consensus 321 ~~~~~~~~~~~~~~~g~~~~~~~~~iRl~~~~~~t~e~i~~~~~~l~~~~~-~~~~ 375 (382)
T 4hvk_A 321 CSSKTLQPSHVLMACGLKHEEAHGTLLLTLGRYNTDEDVDRLLEVLPGVIE-RLRS 375 (382)
T ss_dssp ------CCCHHHHHTTCCHHHHHTEEEEECCTTCCHHHHHHHHHHHHHHHH-HHHH
T ss_pred cCCCCCcchHHHHHcCCChhhcCCeEEEEcCCCCCHHHHHHHHHHHHHHHH-HHHh
Confidence 58999999988999999999999999998 6543
No 144
>1uu1_A Histidinol-phosphate aminotransferase; histidine biosynthesis, pyridoxal phosphate, complete proteome; HET: PMP HSA; 2.38A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1uu0_A 1h1c_A* 1uu2_A* 2f8j_A*
Probab=99.94 E-value=3e-26 Score=210.68 Aligned_cols=274 Identities=13% Similarity=0.085 Sum_probs=188.8
Q ss_pred CCCCcHHHHHHHHhcccC-----CCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccC
Q 017259 18 FYNDKFPVFAERLTSMFG-----YDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSC 92 (374)
Q Consensus 18 ~~~~~~~~l~~~l~~~~~-----~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~ 92 (374)
|+.....++++.++++++ .+++++++|++++++.+++++ | |+|++. |+|++....+...+.
T Consensus 53 y~~~~~~~lr~~la~~~~~~~~~~~~v~~~~G~~~al~~~~~~~--------g-----d~Vl~~-p~y~~~~~~~~~~g~ 118 (335)
T 1uu1_A 53 YYDSPDEELIEKILSYLDTDFLSKNNVSVGNGADEIIYVMMLMF--------D-----RSVFFP-PTYSCYRIFAKAVGA 118 (335)
T ss_dssp CCCSSCHHHHHHHHHHHTCSSCCGGGEEEESSHHHHHHHHHHHS--------S-----EEEECS-SSCHHHHHHHHHHTC
T ss_pred CCCCchHHHHHHHHHHcCCCCCCHHHEEEcCChHHHHHHHHHHh--------C-----CcEEEC-CCcHHHHHHHHHcCC
Confidence 444457889999999876 358999999999999998865 5 999999 999987655443332
Q ss_pred CccccccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEecccc
Q 017259 93 DNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQS 172 (374)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~ 172 (374)
.... .+...+. . .|++++ ++++++++++++|++|.+.+ .+++.++++..| ++|+||+|+
T Consensus 119 ~~~~----v~~~~~~-~---~d~~~l--------~~~~~v~l~~p~nptG~~~~----~~~l~~l~~~~~-~li~De~~~ 177 (335)
T 1uu1_A 119 KFLE----VPLTKDL-R---IPEVNV--------GEGDVVFIPNPNNPTGHVFE----REEIERILKTGA-FVALDEAYY 177 (335)
T ss_dssp EEEE----CCCCTTS-C---CCCCCC--------CTTEEEEEESSCTTTCCCCC----HHHHHHHHHTTC-EEEEECTTH
T ss_pred eEEE----eccCCCC-C---CCHHHc--------CCCCEEEEeCCCCCCCCCCC----HHHHHHHHHhCC-EEEEECcch
Confidence 2111 1111110 0 133333 25778887777889998885 555555555558 899999999
Q ss_pred CCcccccCcc-cccCCCCCcEEEeccccc-CCccchhhheeCHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHh-hhc
Q 017259 173 GLARSGRMLA-SDWEEVRPDMVILGKALG-GGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIR-DEK 249 (374)
Q Consensus 173 ~~~~~g~~~~-~~~~~~~~d~~s~sK~~~-~G~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~al~~~~-~~~ 249 (374)
++... .... ....+....+.|+||.++ +|+ |+||+++++++.+.+... ..+++.+++++.++.++++... .++
T Consensus 178 ~~~~~-~~~~~~~~~~~~i~~~s~sK~~g~~G~-r~G~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~ 253 (335)
T 1uu1_A 178 EFHGE-SYVDFLKKYENLAVIRTFSKAFSLAAQ-RVGYVVASEKFIDAYNRV--RLPFNVSYVSQMFAKVALDHREIFEE 253 (335)
T ss_dssp HHHCC-CCGGGGGTCSSEEEEEESTTTTTCGGG-CCEEEEECHHHHHHHHHH--SCTTCSCHHHHHHHHHHHHTHHHHHH
T ss_pred hhcch-hHHHHhhhCCCEEEEecchhhcCCccc-CeEEEEeCHHHHHHHHHh--cCCCCcCHHHHHHHHHHhCCHHHHHH
Confidence 76421 1111 111222233459999998 798 999999999988877643 2346889999999998887531 124
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCchhHHHHHHHHHHCCeEeccCCCCEEEEecCCCC
Q 017259 250 LAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTHDTIVRLTPPLSI 329 (374)
Q Consensus 250 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~~~lRi~~~~~~ 329 (374)
..++++++++++.+.|++.. + .+ .++.+.++++.++. . +..++.+.|.++||.+++. .+++||+++
T Consensus 254 ~~~~~~~~~~~l~~~L~~~g--~-~~---~~~~~~~~~~~~~~-~---~~~~~~~~l~~~gi~v~~~-~~~iRis~~--- 319 (335)
T 1uu1_A 254 RTKFIVEERERMKSALREMG--Y-RI---TDSRGNFVFVFMEK-E---EKERLLEHLRTKNVAVRSF-REGVRITIG--- 319 (335)
T ss_dssp HHHHHHHHHHHHHHHHHHHT--C-CB---CCCCSSEEEEECCT-H---HHHHHHHHHHHHTEEEEEE-TTEEEEECC---
T ss_pred HHHHHHHHHHHHHHHHHHCC--c-EE---cCCCCeEEEEECCC-C---CHHHHHHHHHHCCEEEEEC-CCeEEEEeC---
Confidence 56677777777777777651 2 11 23346778877764 2 5778999999999999984 689999953
Q ss_pred CHHHHHHHHHHHHHH
Q 017259 330 SSNELQEGSKALHDV 344 (374)
Q Consensus 330 ~~e~i~~~~~~l~~~ 344 (374)
+++++++++++|+++
T Consensus 320 ~~~~i~~~~~~l~~~ 334 (335)
T 1uu1_A 320 KREENDMILRELEVF 334 (335)
T ss_dssp CHHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHhh
Confidence 578899999988753
No 145
>3qhx_A Cystathionine gamma-synthase METB (CGS); structural genomics, seattle structural genomics center for infectious disease, ssgcid, CGS_LIKE; HET: LLP EPE; 1.65A {Mycobacterium ulcerans} SCOP: c.67.1.0 PDB: 3qi6_A*
Probab=99.94 E-value=7e-26 Score=212.58 Aligned_cols=287 Identities=15% Similarity=0.140 Sum_probs=201.7
Q ss_pred ccCcCCCCCcHHHHHHHHhcccCCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccC
Q 017259 13 LSSRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSC 92 (374)
Q Consensus 13 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~ 92 (374)
+.++.+.++..++++++|+++++.+++++++||++|++.+++.+ .++| |+|++..+.|++..........
T Consensus 58 ~~y~r~~~~~~~~l~~~la~~~g~~~~~~~~sGt~A~~~al~~~-----~~~g-----d~Vi~~~~~y~~~~~~~~~~~~ 127 (392)
T 3qhx_A 58 YEYARTGNPTRTALEAALAAVEDAAFGRAFSSGMAAADCALRAM-----LRPG-----DHVVIPDDAYGGTFRLIDKVFT 127 (392)
T ss_dssp BCBTTTCCHHHHHHHHHHHHHTTCSEEEEESSHHHHHHHHHHHH-----CCTT-----CEEEEETTCCHHHHHHHHHTGG
T ss_pred ccccCCCChHHHHHHHHHHHHhCCCcEEEECCHHHHHHHHHHHH-----hCCC-----CEEEEeCCCcchHHHHHHHHHH
Confidence 34445677888999999999999999999999999999999988 5567 9999999999875443321111
Q ss_pred CccccccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEecccc
Q 017259 93 DNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQS 172 (374)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~ 172 (374)
. ....+..++.+|+++++++++ ++++++++++++|++|.+.+ +++|.++|++||+++|+||+|+
T Consensus 128 ~---------~g~~~~~v~~~d~~~l~~~i~---~~~~~v~~~~~~nptG~~~~----l~~i~~la~~~g~~li~D~~~~ 191 (392)
T 3qhx_A 128 G---------WNVEYTPVALADLDAVRAAIR---PTTRLIWVETPTNPLLSIAD----IAGIAQLGADSSAKVLVDNTFA 191 (392)
T ss_dssp G---------GTCEEEEECTTCHHHHHHHCC---TTEEEEEEESSCTTTCCCCC----HHHHHHHHHHHTCEEEEECTTT
T ss_pred h---------cCcEEEEeCCCCHHHHHHhhC---CCCeEEEEECCCCCCcEEec----HHHHHHHHHHcCCEEEEECCCc
Confidence 1 113355666679999999987 58999999999999999988 9999999999999999999997
Q ss_pred CCcccccCcccccCCCCCcEE--EecccccC-C-ccchhhheeC-HHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHhh
Q 017259 173 GLARSGRMLASDWEEVRPDMV--ILGKALGG-G-VIPVSAVLAD-KEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRD 247 (374)
Q Consensus 173 ~~~~~g~~~~~~~~~~~~d~~--s~sK~~~~-G-~~~~G~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~aa~~al~~~~~ 247 (374)
.+ ... ...+..+|++ |++|.+++ | . ++|+++.+ +++.+.+........+..+++.+.++...++.+.
T Consensus 192 ~~-~~~-----~~~~~~~di~~~S~sK~lg~~g~~-~~G~v~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~l~~l~- 263 (392)
T 3qhx_A 192 SP-ALQ-----QPLSLGADVVLHSTTKYIGGHSDV-VGGALVTNDEELDQSFAFLQNGAGAVPGPFDAYLTMRGLKTLV- 263 (392)
T ss_dssp CT-TTC-----CGGGGTCSEEEEETTTTTTCSSCC-CCEEEEESCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHTTHH-
T ss_pred cc-ccC-----ChHHhCCcEEEEcCccccCCCCCc-eEEEEEECcHHHHHHHHHHHHhcCCCCCHHHHHHHHhhhhHHH-
Confidence 33 111 1223355766 58899996 4 5 88998887 5777777654344456678888777777665432
Q ss_pred hcHHHHHHHHHHHHHHHHHHHHHhCCCceeeE------------------EEEeeeEEEEeccCCCchhHHHHHHHHHHC
Q 017259 248 EKLAERSAHLGEELRQHLFKIQQQFPNYVKEV------------------RGRGLFNAVEFDKTALPVSAYDICLKMKER 309 (374)
Q Consensus 248 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~------------------~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~ 309 (374)
...++..++.+++.+.|++. | .+... ++.|.+++|.++.+. .....+.+.|...
T Consensus 264 -~~~~~~~~~~~~l~~~L~~~----~-~v~~v~~p~l~~~~~~~~~~~~~~g~g~~~~~~l~~~~--~~~~~~~~~l~~~ 335 (392)
T 3qhx_A 264 -LRMQRHSENAAAVAEFLAEH----P-AISTVLYPGLPSHPGHAVAARQMRGFGGMVSVRMRAGR--TAAEQLCAKTNIF 335 (392)
T ss_dssp -HHHHHHHHHHHHHHHHHHTC----T-TEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEETTCH--HHHHHHHHHCSSS
T ss_pred -HHHHHHHHHHHHHHHHHhcC----C-CcceEECCCCCCCCCHHHHHHhCCCCceEEEEEeCCcH--HHHHHHHHhCCCc
Confidence 22455556666666655442 2 22111 334788999987521 1466777777666
Q ss_pred CeEeccC------------------------CCCEEEEecCCCCCHHHHHHHHHHH
Q 017259 310 GILAKPT------------------------HDTIVRLTPPLSISSNELQEGSKAL 341 (374)
Q Consensus 310 Gi~v~~~------------------------~~~~lRi~~~~~~~~e~i~~~~~~l 341 (374)
|+.++.+ .++.+|++++...++++++.+.++|
T Consensus 336 ~~~~s~G~~~sl~~~~~~~~~~~~~~~~~g~~~~~iRlSvg~e~~~~~i~~l~~al 391 (392)
T 3qhx_A 336 ILAESLGSVESLIEHPSAMTHASTAGSQLEVPDDLVRLSVGIEDVADLLDDLKQAL 391 (392)
T ss_dssp EECSCCCCSSCEEECGGGTSCGGGBTTBCCCCTTEEEEECCSSCHHHHHHHHHHHH
T ss_pred eECCCCCCCCceeeCcccccccccCHHHcCCCCCeEEEEeccCCHHHHHHHHHHHh
Confidence 6554322 2568999977766666666555544
No 146
>3mad_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxal phosphate; HET: LLP; 2.00A {Symbiobacterium thermophilum} PDB: 3maf_A* 3mau_A* 3mbb_A*
Probab=99.94 E-value=1.2e-25 Score=218.55 Aligned_cols=293 Identities=17% Similarity=0.106 Sum_probs=197.5
Q ss_pred HHHHHHHhcccCCC----eE--EecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccCCcccc
Q 017259 24 PVFAERLTSMFGYD----MV--LPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAI 97 (374)
Q Consensus 24 ~~l~~~l~~~~~~~----~~--~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~ 97 (374)
.++++++++++|.+ ++ ++++||++|++.++++++.++...+| .++|+|++..++|++....+...+.
T Consensus 142 ~~l~~~la~~~g~~~~~~~v~~~~t~ggt~a~~~al~a~~~~g~~~~g--~~~d~Vi~~~~~~~~~~~~~~~~G~----- 214 (514)
T 3mad_A 142 AEVVAMTAHMLGGDAAGGTVCGTVTSGGTESLLLAMKTYRDWARATKG--ITAPEAVVPVSAHAAFDKAAQYFGI----- 214 (514)
T ss_dssp HHHHHHHHHHTTGGGGTSCCEEEEESSHHHHHHHHHHHHHHHHHHHHC--CSSCEEEEETTSCTHHHHHHHHHTC-----
T ss_pred HHHHHHHHHHcCCCCccCCcceEEcCcHHHHHHHHHHHHHHHhhhhcC--CCCCeEEEeCccchHHHHHHHHcCC-----
Confidence 34667778877765 67 99999999999999999765422233 2338999999998775544443322
Q ss_pred ccCCCCCCCceeccCC-----CHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEecccc
Q 017259 98 RGFGPLLPGHLKVDFG-----DITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQS 172 (374)
Q Consensus 98 ~~~~~~~~~~~~~~~~-----d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~ 172 (374)
++..++++ |+++|+++++ ++++++++++++|++|.+.+ +++|.++|++||++||+||+|+
T Consensus 215 --------~v~~v~~~~~~~~d~~~Le~~i~---~~~~~v~~~~~~nptG~~~~----l~~i~~la~~~~i~livDea~~ 279 (514)
T 3mad_A 215 --------KLVRTPLDADYRADVAAMREAIT---PNTVVVAGSAPGYPHGVVDP----IPEIAALAAEHGIGCHVDACLG 279 (514)
T ss_dssp --------EEEEECBCTTSCBCHHHHHHHCC---TTEEEEEEETTCTTTCCCCC----HHHHHHHHHHHTCEEEEECTTT
T ss_pred --------eeEEeeeCCCCCCCHHHHHHHhc---cCCEEEEEeCCCCCCccccC----HHHHHHHHHHhCCeEEEecccc
Confidence 12223322 8999999987 57999999999999999988 9999999999999999999999
Q ss_pred CCcc-----ccc---CcccccCCCCCcEE--EecccccCCccchhhheeCHHHHhhcCCC----CC-------CCCCCCC
Q 017259 173 GLAR-----SGR---MLASDWEEVRPDMV--ILGKALGGGVIPVSAVLADKEVMLCIQPG----EH-------GSTFGGN 231 (374)
Q Consensus 173 ~~~~-----~g~---~~~~~~~~~~~d~~--s~sK~~~~G~~~~G~~~~~~~~~~~~~~~----~~-------~~~~~~~ 231 (374)
++.. .|. .+.....+. |++ +++|.+.+|. ++|+++.+++........ .. ....+.+
T Consensus 280 ~~~~~~~~~~g~~~~~~~~~~~g~--d~~~~s~~K~l~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~~ 356 (514)
T 3mad_A 280 GFILPWAERLGYPVPPFDFRLEGV--TSVSADTHKYGYGAK-GTSVILYRRPDLLHYQYFIAADWPGGLYFSPTFAGSRP 356 (514)
T ss_dssp TTTHHHHHHTTCCCCCCSTTSTTC--CEEEECTTTTTCCCS-SCEEEEESSHHHHTTTCEEESSCTTCSEEESSSCSSCC
T ss_pred cccchhHHhcCCCCCcccccCCCC--cEEEECchhccCCCC-CeEEEEEeCHHHhccccccccccCCCcccCCccCCCCc
Confidence 7632 222 222223333 555 5559988888 899988876554432210 00 0111233
Q ss_pred HHHHHHHHHHHHHHhh---hcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCchhHHHHHHHHHH
Q 017259 232 PLASAVAIASLDVIRD---EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKE 308 (374)
Q Consensus 232 ~~~~~aa~~al~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~ 308 (374)
.....+..++++.+.. +++.++.+++.+++.+.|+++ +++...... ..++++..+.. +..++.+.|.+
T Consensus 357 ~~~~~a~~aal~~l~~~~~~~~~~~~~~~~~~l~~~L~~~----~g~~~~~~~-~~~~~~~~~~~----~~~~l~~~L~~ 427 (514)
T 3mad_A 357 GALSATAWAAMLSLGEEGYLDATRRILQAADRLKAGVRAI----PSLKILGDP-LWVIAVASDEL----NIYQVMEEMAG 427 (514)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS----TTCEESSCC-SSEEEEECSSS----CHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhC----CCeEEeCCC-eEEEEEeCCCC----CHHHHHHHHHh
Confidence 3434455555555444 345666677777777777653 222211112 34666655432 67899999999
Q ss_pred CCeEeccC-CCCEEEEecC-CCCCHHHHHHHHHHHHHHHhccCCc
Q 017259 309 RGILAKPT-HDTIVRLTPP-LSISSNELQEGSKALHDVLELDLPK 351 (374)
Q Consensus 309 ~Gi~v~~~-~~~~lRi~~~-~~~~~e~i~~~~~~l~~~~~~~~~~ 351 (374)
+||.+... .++.+|++++ ...+++++++++++|+++++ ++..
T Consensus 428 ~Gi~v~g~~~~~~~Ri~~~~~~~~~e~i~~~l~~L~~~l~-~~~~ 471 (514)
T 3mad_A 428 RGWRLNGLHRPPAFHVALTLRHTEPGVVDRFLADLQDAVA-QVRA 471 (514)
T ss_dssp TTCBCEEETTTTEEEEECCGGGGSTTHHHHHHHHHHHHHH-HHHH
T ss_pred cCCEeccCCCCCeEEEEEecCCCCHHHHHHHHHHHHHHHH-HHHh
Confidence 99988433 3678999976 44567999999999999998 6643
No 147
>2yrr_A Aminotransferase, class V; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; HET: PLP; 1.86A {Thermus thermophilus} PDB: 2yri_A*
Probab=99.94 E-value=3.4e-26 Score=211.26 Aligned_cols=284 Identities=16% Similarity=0.129 Sum_probs=202.5
Q ss_pred CcHHHHHHHHhcccCC----CeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccc-cccccCCcc
Q 017259 21 DKFPVFAERLTSMFGY----DMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLA-AISMSCDNE 95 (374)
Q Consensus 21 ~~~~~l~~~l~~~~~~----~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~-~~~~~~~~~ 95 (374)
+...++++++++++|. +++++|+||++|++.+++.+. + |+|++.+++|++.... .....+
T Consensus 33 ~~~~~l~~~la~~~g~~~~~~~v~~t~g~t~a~~~~~~~~~-------~-----d~vl~~~~~~~~~~~~~~~~~~g--- 97 (353)
T 2yrr_A 33 RVNRAIQERLAALFDPGEGALVAALAGSGSLGMEAGLANLD-------R-----GPVLVLVNGAFSQRVAEMAALHG--- 97 (353)
T ss_dssp HHHHHHHHHHHHHHCCCTTCEEEEESSCHHHHHHHHHHTCS-------C-----CCEEEEECSHHHHHHHHHHHHTT---
T ss_pred HHHHHHHHHHHHHhCCCCCCceEEEcCCcHHHHHHHHHHhc-------C-----CcEEEEcCCCchHHHHHHHHHcC---
Confidence 3477899999998875 479999999999999988662 1 6788989888875111 111111
Q ss_pred ccccCCCCCCCceeccC-----CCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEecc
Q 017259 96 AIRGFGPLLPGHLKVDF-----GDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEI 170 (374)
Q Consensus 96 ~~~~~~~~~~~~~~~~~-----~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea 170 (374)
..+..++. .|+++++++++++ +++++++++++|++|.+.+ +++|.++|++||+++|+||+
T Consensus 98 ---------~~~~~v~~~~~~~~d~~~l~~~l~~~--~~~~v~~~~~~nptG~~~~----~~~i~~l~~~~~~~li~D~a 162 (353)
T 2yrr_A 98 ---------LDPEVLDFPPGEPVDPEAVARALKRR--RYRMVALVHGETSTGVLNP----AEAIGALAKEAGALFFLDAV 162 (353)
T ss_dssp ---------CCEEEEECCTTSCCCHHHHHHHHHHS--CCSEEEEESEETTTTEECC----HHHHHHHHHHHTCEEEEECT
T ss_pred ---------CceEEEeCCCCCCCCHHHHHHHHHhC--CCCEEEEEccCCCcceecC----HHHHHHHHHHcCCeEEEEcC
Confidence 11222221 3799999999853 6788899999999999998 99999999999999999999
Q ss_pred ccCCcccccCcccccCCCCCcEE--EecccccCCccchhhheeCHHHHhhcCC--C-------------CCCCCCCCCHH
Q 017259 171 QSGLARSGRMLASDWEEVRPDMV--ILGKALGGGVIPVSAVLADKEVMLCIQP--G-------------EHGSTFGGNPL 233 (374)
Q Consensus 171 ~~~~~~~g~~~~~~~~~~~~d~~--s~sK~~~~G~~~~G~~~~~~~~~~~~~~--~-------------~~~~~~~~~~~ 233 (374)
|+ ++.. .+.... ..+|++ +++|+++++. ++|++++++++.+.++. . .....++.+..
T Consensus 163 ~~-~~~~--~~~~~~--~~~d~~~~s~~K~~~~~~-g~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (353)
T 2yrr_A 163 TT-LGML--PFSMRA--MGVDYAFTGSQKCLSAPP-GLAPIAASLEARKAFTGKRGWYLDLARVAEHWERGGYHHTTPVL 236 (353)
T ss_dssp TT-TTTS--CCCHHH--HTCSEEECCTTSTTCCCS-SCEEEEECHHHHHHCCCCSCSTTCHHHHHHHHTTCCCSSCCCHH
T ss_pred cc-cccc--cccccc--cCceEEEecCcccccCCC-ceEEEEECHHHHHHhccCCCccccHHHHhhhhhcCCCCCCCCHH
Confidence 95 4322 112221 235666 4569888766 77999999998877752 0 12233456777
Q ss_pred HHHHHHHHHHHHhhh---cHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCchhHHHHHHHHHHCC
Q 017259 234 ASAVAIASLDVIRDE---KLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERG 310 (374)
Q Consensus 234 ~~~aa~~al~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~G 310 (374)
++.++.++++.+.++ ++.++++++++++.+.|+++ .+ .........+.++++.++... +..++.+.|.++|
T Consensus 237 ~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~--g~-~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~~~g 310 (353)
T 2yrr_A 237 LHYALLEALDLVLEEGVAARERRAREVYAWVLEELKAR--GF-RPYPKASPLPTVLVVRPPEGV---DADRLVRALYAEG 310 (353)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT--TC-EESCSSSBCTTEEEEECCTTC---CHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHC--CC-ccccCccCCCeEEEEECCCCC---CHHHHHHHHHHCC
Confidence 888888888876443 45677777888888888764 22 111111113555677775433 6789999999999
Q ss_pred eEeccCC----CCEEEEecCCCCCHHHHH-HHHHHHHHHHh
Q 017259 311 ILAKPTH----DTIVRLTPPLSISSNELQ-EGSKALHDVLE 346 (374)
Q Consensus 311 i~v~~~~----~~~lRi~~~~~~~~e~i~-~~~~~l~~~~~ 346 (374)
|.++++. .+++|++++...++++++ +++++|+++++
T Consensus 311 i~v~~g~~~~~~~~iRi~~~~~~~~~~~~~~~~~~l~~~l~ 351 (353)
T 2yrr_A 311 VAVAGGIGPTRGQVLRLGLMGEGARREAYQAFLKALDRALA 351 (353)
T ss_dssp EECEECCGGGTTTCEEEECSGGGSCHHHHHHHHHHHHHHHH
T ss_pred EEEeCCccccCCCeEEEecCccCCHHHHHHHHHHHHHHHHh
Confidence 9998753 688999987778889999 99999999887
No 148
>3tcm_A Alanine aminotransferase 2; pyridoxal phosphate (PLP)-binding; HET: DCS; 2.71A {Hordeum vulgare}
Probab=99.94 E-value=1.5e-25 Score=216.78 Aligned_cols=303 Identities=10% Similarity=0.055 Sum_probs=195.4
Q ss_pred CcHHHHHHHHhccc--------CCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccC
Q 017259 21 DKFPVFAERLTSMF--------GYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSC 92 (374)
Q Consensus 21 ~~~~~l~~~l~~~~--------~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~ 92 (374)
....++++.+++++ ..+++++|+|+++++..++.++. ..+| |.|++..|+|+++.......+.
T Consensus 134 ~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~----~~~g-----d~Vlv~~p~y~~~~~~~~~~g~ 204 (500)
T 3tcm_A 134 QGIHGLRDAIASGIASRDGFPANADDIFLTDGASPGVHLMMQLLI----RNEK-----DGILVPIPQYPLYSASIALHGG 204 (500)
T ss_dssp TCCHHHHHHHHHHHHHHHSSCCCGGGEEEESSSHHHHHHHHHHHC----CSTT-----EEEEEEESCCTHHHHHHHHTTC
T ss_pred cChHHHHHHHHHHHHhhcCCCCCcccEEEcCCHHHHHHHHHHHHc----CCCC-----CEEEEeCCCcHhHHHHHHHcCC
Confidence 33444555555432 35689999999999999999883 1567 9999999999877665544433
Q ss_pred CccccccCCCCCCCceeccCCCHHHHHHHHHhc---CCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEec
Q 017259 93 DNEAIRGFGPLLPGHLKVDFGDITALEKIFKES---GDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADE 169 (374)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~---~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~De 169 (374)
...... ..+. .++ ..|+++|++++++. +.+++++++++++|++|.+. +.+.+++|+++|++||+++|+||
T Consensus 205 ~~~~~~-~~~~-~~~----~~d~~~l~~~l~~~~~~~~~~k~ivl~~p~NPtG~~~-s~~~l~~i~~la~~~~~~li~De 277 (500)
T 3tcm_A 205 ALVPYY-LNES-TGW----GLETSDVKKQLEDARSRGINVRALVVINPGNPTGQVL-AEENQYDIVKFCKNEGLVLLADE 277 (500)
T ss_dssp EEEEEE-CBTT-TTS----BCCHHHHHHHHHHHHHTTCEEEEEEEESSCTTTCCCC-CHHHHHHHHHHHHHHTCEEEEEC
T ss_pred EEEEEe-cccc-cCC----CCCHHHHHHHHHHHHhcCCCceEEEEECCCCCCcccC-CHHHHHHHHHHHHHcCCEEEEec
Confidence 211111 0000 000 12899999999852 23688888888888899777 89999999999999999999999
Q ss_pred cccCCccccc--Ccccc----cCC---CCCc-EE--Eecccc-c-CCccchhhhee---CHHHHhhcCCCCCCCCCCCCH
Q 017259 170 IQSGLARSGR--MLASD----WEE---VRPD-MV--ILGKAL-G-GGVIPVSAVLA---DKEVMLCIQPGEHGSTFGGNP 232 (374)
Q Consensus 170 a~~~~~~~g~--~~~~~----~~~---~~~d-~~--s~sK~~-~-~G~~~~G~~~~---~~~~~~~~~~~~~~~~~~~~~ 232 (374)
+|.++.+.+. ...+. ..+ -..+ ++ ||||++ + .|+ |+||+++ ++++++.+.... ...++.+.
T Consensus 278 ay~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~-R~G~~~~~~~~~~~~~~l~~~~-~~~~~~~~ 355 (500)
T 3tcm_A 278 VYQENIYVDNKKFHSFKKIVRSLGYGEEDLPLVSYQSVSKGYYGECGK-RGGYFEITGFSAPVREQIYKIA-SVNLCSNI 355 (500)
T ss_dssp TTTTCBCCTTCCCCCHHHHHHHTTCSSSCCCEEEEEESSSTTTCCGGG-CCEEEEEESCCTTHHHHHHHHH-HTTCCCCH
T ss_pred CccccccCCCCCCCcHHHHHHHhccccCCeEEEEEecCCccCCCCCcc-ceEEEEEeCCCHHHHHHHHHHH-hcccCCCH
Confidence 9997644322 11111 111 1122 22 899999 5 588 9999887 788877776432 34566788
Q ss_pred HHHHHHHHHHH-----------HHhh-hcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEE-eeeEEEEeccCCC----
Q 017259 233 LASAVAIASLD-----------VIRD-EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGR-GLFNAVEFDKTAL---- 295 (374)
Q Consensus 233 ~~~~aa~~al~-----------~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~---- 295 (374)
+++.++..+++ +... +.+.++++++++++.+.|+++ |++ ....+. +.+.|+.+.....
T Consensus 356 ~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~----~g~-~~~~~~g~~~~~~~~~lp~~~~~~ 430 (500)
T 3tcm_A 356 TGQILASLVMNPPKASDESYASYKAEKDGILASLARRAKALEHAFNKL----EGI-TCNEAEGAMYVFPQICLPQKAIEA 430 (500)
T ss_dssp HHHHHHHHHHSCCCSSSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS----TTE-ECCCCCBTTEECCEECCCHHHHHH
T ss_pred HHHHHHHHHhcCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----CCc-EEecCCeEEEEeeeecCchhhHHH
Confidence 88888777764 1111 234555666666666666543 322 223334 4444533321100
Q ss_pred ----ch-hHHHHH-HHHHHCCeEeccC-------CCCEEEEecCCCCCHHHHHHHHHHHHHHHhccC
Q 017259 296 ----PV-SAYDIC-LKMKERGILAKPT-------HDTIVRLTPPLSISSNELQEGSKALHDVLELDL 349 (374)
Q Consensus 296 ----~~-~~~~~~-~~l~~~Gi~v~~~-------~~~~lRi~~~~~~~~e~i~~~~~~l~~~~~~~~ 349 (374)
+. ....++ +.|.++||.+.|+ +.+++|+++. .+++++++++++|+++++ ++
T Consensus 431 ~~~~g~~~~~~~~~~ll~~~gI~v~pg~~f~~~~g~~~iRis~~--~~~e~i~~~i~~l~~~~~-~~ 494 (500)
T 3tcm_A 431 AKAANKAPDAFYALRLLESTGIVVVPGSGFGQVPGTWHFRCTIL--PQEDKIPAVISRFTVFHE-AF 494 (500)
T ss_dssp HHHHTSCHHHHHHHHHHHHHCEECEESTTTCCCTTCCBEEEESC--SCTTTHHHHHHHHHHHHH-HH
T ss_pred HHhcCCCcHHHHHHHHHHHCCEEEEeCcccCCCCCCCEEEEEEC--CCHHHHHHHHHHHHHHHH-HH
Confidence 00 122334 4455679999875 2458999966 788999999999999887 54
No 149
>3ihj_A Alanine aminotransferase 2; helix, structural genomics, structural genomics consortium, pyridoxal phosphate; HET: PLP; 2.30A {Homo sapiens}
Probab=99.94 E-value=1.6e-25 Score=216.32 Aligned_cols=300 Identities=13% Similarity=0.091 Sum_probs=195.8
Q ss_pred CCcHHHHHHHHhcccC-----CCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccCCc
Q 017259 20 NDKFPVFAERLTSMFG-----YDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDN 94 (374)
Q Consensus 20 ~~~~~~l~~~l~~~~~-----~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~~~ 94 (374)
.++++.+++.+.+..| .+++++|+|+++++..+++++ ..+| +.+.|.|++..|+|+.+.......+...
T Consensus 132 ~~lr~~ia~~~~~~~gG~~~~~~~i~~t~G~~~ai~~~~~~l-----~~~g-d~~~d~Vlv~~p~y~~~~~~~~~~g~~~ 205 (498)
T 3ihj_A 132 NCIREDVAAYITRRDGGVPADPDNIYLTTGASDGISTILKIL-----VSGG-GKSRTGVMIPIPQYPLYSAVISELDAIQ 205 (498)
T ss_dssp HHHHHHHHHHHHHHTTTCCCCGGGEEEESSHHHHHHHHHHHH-----CCCC-GGGSEEEEEEESCCTHHHHHHHHTTCEE
T ss_pred HHHHHHHHHHHHHhcCCCCCCcccEEEcCCHHHHHHHHHHHH-----cCCC-CCCCCEEEEeCCCchhHHHHHHHcCCEE
Confidence 3456666666665543 568999999999999999988 4444 1012699999999977655544333221
Q ss_pred cccccCCCCCCCceeccC-------CCHHHHHHHHHhcCC--cEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEE
Q 017259 95 EAIRGFGPLLPGHLKVDF-------GDITALEKIFKESGD--QIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILM 165 (374)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~-------~d~~~le~~l~~~~~--~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~l 165 (374)
..+++ .|+++|++++++... +++++++++++||+|.+. +.+.+++|+++|++||++|
T Consensus 206 -------------v~~~~~~~~~~~~d~~~le~~l~~~~~~~~~k~i~l~np~NPTG~v~-s~~~l~~i~~la~~~~~~l 271 (498)
T 3ihj_A 206 -------------VNYYLDEENCWALNVNELRRAVQEAKDHCDPKVLCIINPGNPTGQVQ-SRKCIEDVIHFAWEEKLFL 271 (498)
T ss_dssp -------------EEEECBGGGTTBCCHHHHHHHHHHHTTTSEEEEEEEESSCTTTCCCC-CHHHHHHHHHHHHHHTCEE
T ss_pred -------------EEeeccccccCCCCHHHHHHHHHhhhccCCCeEEEEECCCCCCCCcC-CHHHHHHHHHHHHHcCcEE
Confidence 11111 189999999986422 588988888899999877 8999999999999999999
Q ss_pred EEeccccCCccccc--CcccccC--C------CCCc---EEEecccc-c-CCccchhhhe---eCHHHHhhcCCCCCCCC
Q 017259 166 IADEIQSGLARSGR--MLASDWE--E------VRPD---MVILGKAL-G-GGVIPVSAVL---ADKEVMLCIQPGEHGST 227 (374)
Q Consensus 166 i~Dea~~~~~~~g~--~~~~~~~--~------~~~d---~~s~sK~~-~-~G~~~~G~~~---~~~~~~~~~~~~~~~~~ 227 (374)
|+||+|.++.+.+. ...+... + -... +.||||.+ | .|+ |+||++ .++++.+.+.... ...
T Consensus 272 i~De~y~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~S~SK~~~G~~G~-R~G~~~~~~~~~~l~~~l~~~~-~~~ 349 (498)
T 3ihj_A 272 LADEVYQDNVYSPDCRFHSFKKVLYEMGPEYSSNVELASFHSTSKGYMGECGY-RGGYMEVINLHPEIKGQLVKLL-SVR 349 (498)
T ss_dssp EEECTTTTCBCCTTCCCCCHHHHHHHTCHHHHTTCCEEEEEESSSSTTCCSSS-CCEEEEEESCCHHHHHHHHHHH-HHS
T ss_pred EEEcCccccccCCCCCcCCHHHHHHHhcccccCceeEEEEeccccccccCccc-ceEEEEEecCCHHHHHHHHHHH-hcc
Confidence 99999997654432 2111110 0 0112 33899999 4 699 999987 5788887776432 234
Q ss_pred CCCCHHHHHHHHHHHH-----------HHhh-hcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEE-eeeEEEEeccCC
Q 017259 228 FGGNPLASAVAIASLD-----------VIRD-EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGR-GLFNAVEFDKTA 294 (374)
Q Consensus 228 ~~~~~~~~~aa~~al~-----------~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~ 294 (374)
.+.+.+++.++.++++ ++.. ..+.++++++++.+.+.|++ +|+ +....+. +.+.|+.++...
T Consensus 350 ~~~~~~~q~a~~~~l~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~----~~g-~~~~~p~gg~~~~~~l~~p~ 424 (498)
T 3ihj_A 350 LCPPVSGQAAMDIVVNPPVAGEESFEQFSREKESVLGNLAKKAKLTEDLFNQ----VPG-IHCNPLQGAMYAFPRIFIPA 424 (498)
T ss_dssp CCCCHHHHHHHHHHTCCCCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHT----STT-EECCCCCBSSEECCEECCCH
T ss_pred CCCCHHHHHHHHHHhcCCccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhc----CCC-cEecCCCeEEEEEEeccCch
Confidence 5667788877666553 1111 23345555556666555544 333 2223334 444554443110
Q ss_pred --------CchhHHHH-HHH-HHHCCeEeccC-------CCCEEEEecCCCCCHHHHHHHHHHHHHHHhccC
Q 017259 295 --------LPVSAYDI-CLK-MKERGILAKPT-------HDTIVRLTPPLSISSNELQEGSKALHDVLELDL 349 (374)
Q Consensus 295 --------~~~~~~~~-~~~-l~~~Gi~v~~~-------~~~~lRi~~~~~~~~e~i~~~~~~l~~~~~~~~ 349 (374)
.+.+.+++ +.. |.++||.+.++ +.+++|+++ ..+++++++++++|+++++ ++
T Consensus 425 ~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pG~~f~~~~~~~~~Ris~--~~~~e~l~~~i~~L~~~~~-~~ 493 (498)
T 3ihj_A 425 KAVEAAQAHQMAPDMFYCMKLLEETGICVVPGSGFGQREGTYHFRMTI--LPPVEKLKTVLQKVKDFHI-NF 493 (498)
T ss_dssp HHHHHHHHTTSCHHHHHHHHHHHHHCBCCEEGGGTCCCTTCCBEEEEC--CSCHHHHHHHHHHHHHHHH-HH
T ss_pred hhhHHHHhcCCCcHHHHHHHHHHHCCEEEEeCcccCCCCCCCEEEEEe--CCCHHHHHHHHHHHHHHHH-HH
Confidence 01123443 444 55679999874 245899996 4789999999999999987 54
No 150
>1gc0_A Methionine gamma-lyase; pyridoxal-5'-phosphate; HET: LLP; 1.70A {Pseudomonas putida} SCOP: c.67.1.3 PDB: 1gc2_A* 1pg8_A* 1ukj_A* 2o7c_A*
Probab=99.93 E-value=5.3e-25 Score=207.16 Aligned_cols=294 Identities=15% Similarity=0.123 Sum_probs=201.0
Q ss_pred ccCcCCCCCcHHHHHHHHhcccCCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccC
Q 017259 13 LSSRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSC 92 (374)
Q Consensus 13 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~ 92 (374)
+.++.+.++...++++++++++|.++.++++||++|++.+++.+ ..+| ++|++..++|++.......+..
T Consensus 57 ~~~~r~~~~~~~~l~~~la~~~g~~~~i~~~sG~~a~~~~l~~~-----~~~g-----d~vl~~~~~~~~~~~~~~~~~~ 126 (398)
T 1gc0_A 57 HFYSRISNPTLNLLEARMASLEGGEAGLALASGMGAITSTLWTL-----LRPG-----DEVLLGNTLYGCTFAFLHHGIG 126 (398)
T ss_dssp ------CCHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHH-----CCTT-----CEEEEESSCCSHHHHHHHHTGG
T ss_pred CcccCCCChHHHHHHHHHHHHhCCCcEEEECCHHHHHHHHHHHH-----hcCC-----CEEEEeCCCchhHHHHHHHHHH
Confidence 33445678889999999999998889999999999999999988 4567 9999999999876544322111
Q ss_pred CccccccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEecccc
Q 017259 93 DNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQS 172 (374)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~ 172 (374)
..+ ..+..++.+|+++++++++ ++++++++++++|++|.+.+ +++|.++|++||+++|+||+|+
T Consensus 127 ~~g---------~~~~~~~~~d~~~l~~~i~---~~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~D~~~~ 190 (398)
T 1gc0_A 127 EFG---------VKLRHVDMADLQALEAAMT---PATRVIYFESPANPNMHMAD----IAGVAKIARKHGATVVVDNTYC 190 (398)
T ss_dssp GGT---------CEEEEECTTCHHHHHHHCC---TTEEEEEEESSCTTTCCCCC----HHHHHHHHGGGTCEEEEECTTT
T ss_pred HcC---------CEEEEECCCCHHHHHHhcC---CCCeEEEEECCCCCCccccc----HHHHHHHHHHcCCEEEEECCCc
Confidence 101 2344555568999999887 57999999999999999998 9999999999999999999998
Q ss_pred CCcccccCcccccCCCCCcEEEecccccC-Cccch-hhheeCHHHHh-hcCCCCCC-CCCCCCHHHHHHHHHHHHHHhhh
Q 017259 173 GLARSGRMLASDWEEVRPDMVILGKALGG-GVIPV-SAVLADKEVML-CIQPGEHG-STFGGNPLASAVAIASLDVIRDE 248 (374)
Q Consensus 173 ~~~~~g~~~~~~~~~~~~d~~s~sK~~~~-G~~~~-G~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~aa~~al~~~~~~ 248 (374)
.+. .+... ..+.+..+.|++|.+++ |. |+ |+++++++.++ .+...... .+...+++.++++.++++.+ .
T Consensus 191 ~~~-~~~~~---~~~~d~~~~S~sK~~~~~~~-~~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~ 263 (398)
T 1gc0_A 191 TPY-LQRPL---ELGADLVVHSATKYLSGHGD-ITAGIVVGSQALVDRIRLQGLKDMTGAVLSPHDAALLMRGIKTL--N 263 (398)
T ss_dssp HHH-HCCGG---GGTCSEEEEETTTTTTCSSS-CCCEEEEECHHHHHHHHHTHHHHHTCCCCCHHHHHHHHHHHTTH--H
T ss_pred ccc-cCCch---hhCceEEEECCccccCCCCC-CeEEEEEEChHHHHHHHHHHhhccCCCCCCHHHHHHHHhccchH--H
Confidence 432 12221 12333334588899995 66 77 88888877655 45433233 34567888888877777644 2
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHh----CC------Ccee---eEEEEeeeEEEEeccCCCchhHHHHHHHHHHCCeEecc
Q 017259 249 KLAERSAHLGEELRQHLFKIQQQ----FP------NYVK---EVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKP 315 (374)
Q Consensus 249 ~~~~~~~~~~~~~~~~l~~~~~~----~~------~~~~---~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~ 315 (374)
...++..++.+++.+.|++.... +| ++.. ...+.+.++.|.++. ...+..+.+.+.|+.+..
T Consensus 264 ~~~~~~~~~~~~l~~~L~~~~~v~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~-----~~~~~~~~l~~~~i~~~~ 338 (398)
T 1gc0_A 264 LRMDRHCANAQVLAEFLARQPQVELIHYPGLASFPQYTLARQQMSQPGGMIAFELKG-----GIGAGRRFMNALQLFSRA 338 (398)
T ss_dssp HHHHHHHHHHHHHHHHHHTCTTEEEEEEC----------------CCTTEEEEEETT-----HHHHHHHHHHHCSSSEEC
T ss_pred HHHHHHHHHHHHHHHHHhcCCCeeEEECCCCCCCcCHHHHHhhCCCCceEEEEEECC-----CHHHHHHHHHhCCCceec
Confidence 33556666666666666552100 00 0000 012357788887753 334566667777766533
Q ss_pred ---C---------------------------CCCEEEEecCCCCCHHHHHHHHHHHHHH
Q 017259 316 ---T---------------------------HDTIVRLTPPLSISSNELQEGSKALHDV 344 (374)
Q Consensus 316 ---~---------------------------~~~~lRi~~~~~~~~e~i~~~~~~l~~~ 344 (374)
+ ..+.+|++++...++++++.+.++|+++
T Consensus 339 ~s~G~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRis~g~~~~~~~i~~l~~al~~~ 397 (398)
T 1gc0_A 339 VSLGDAESLAQHPASMTHSSYTPEERAHYGISEGLVRLSVGLEDIDDLLADVQQALKAS 397 (398)
T ss_dssp SCCSCSSCEEECGGGTTTSSSCHHHHHHTTCCTTEEEEECCSSCHHHHHHHHHHHHHHH
T ss_pred cCCCCcceeeecccccccccCCHHHHHhcCCCCCeEEEEeCcCCHHHHHHHHHHHHHhc
Confidence 1 1479999999988999999998888764
No 151
>4eb5_A Probable cysteine desulfurase 2; scaffold, transferase-metal binding protein complex; HET: PLP EPE; 2.53A {Archaeoglobus fulgidus} PDB: 4eb7_A*
Probab=99.93 E-value=4.2e-25 Score=206.28 Aligned_cols=294 Identities=15% Similarity=0.090 Sum_probs=197.2
Q ss_pred CcHHHHHHHHhcccCCC--eEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccCCccccc
Q 017259 21 DKFPVFAERLTSMFGYD--MVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIR 98 (374)
Q Consensus 21 ~~~~~l~~~l~~~~~~~--~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~ 98 (374)
+...++++++++++|.+ ++++++||++|++.+++++.... .++| |+|++.+++|++.......+... +...
T Consensus 43 ~~~~~l~~~la~~~g~~~~~v~~~~g~t~a~~~~~~~l~~~~-~~~g-----d~Vl~~~~~~~~~~~~~~~~~~~-g~~~ 115 (382)
T 4eb5_A 43 EAVQEAREKVAKLVNGGGGTVVFTSGATEANNLAIIGYAMRN-ARKG-----KHILVSAVEHMSVINPAKFLQKQ-GFEV 115 (382)
T ss_dssp HHHHHHHHHHHHHHTCTTEEEEEESSHHHHHHHHHHHHHHHH-GGGC-----CEEEEETTCCHHHHHHHHHHTTT-TCEE
T ss_pred HHHHHHHHHHHHHhCCCCCeEEEcCchHHHHHHHHHHHHhhc-cCCC-----CEEEECCCcchHHHHHHHHHHhC-CcEE
Confidence 46778999999988765 89999999999999999885211 2567 99999999987764443322110 1110
Q ss_pred cCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEeccccCCcccc
Q 017259 99 GFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSG 178 (374)
Q Consensus 99 ~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~~~~~~g 178 (374)
.+.+...+. ..|+++++++++ ++++++++++++|++|.+.+ +++|.++|++||++ |+||+|+ ++..
T Consensus 116 ~~v~~~~~~----~~d~~~l~~~i~---~~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~-i~D~a~~-~g~~- 181 (382)
T 4eb5_A 116 EYIPVGKYG----EVDVSFIDQKLR---DDTILVSVQHANNEIGTIQP----VEEISEVLAGKAAL-HIDATAS-VGQI- 181 (382)
T ss_dssp EEECBCTTS----CBCHHHHHHHCC---TTEEEEECCSBCTTTCBBCC----HHHHHHHHTTSSEE-EEECTTT-BTTB-
T ss_pred EEeccCCCC----ccCHHHHHHHhc---CCCeEEEEeccCCCccccCC----HHHHHHHHHHCCCE-EEEcchh-cCCc-
Confidence 011110110 027899998886 47899999999999999998 99999999999999 9999997 3211
Q ss_pred cCcccccCCCCCcEE--EecccccCCccchhhheeCHHHHhhcCCCCC-------CCCCCCCHHHHHHHHHHHHHHhh--
Q 017259 179 RMLASDWEEVRPDMV--ILGKALGGGVIPVSAVLADKEVMLCIQPGEH-------GSTFGGNPLASAVAIASLDVIRD-- 247 (374)
Q Consensus 179 ~~~~~~~~~~~~d~~--s~sK~~~~G~~~~G~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~aa~~al~~~~~-- 247 (374)
.+.... ..+|++ |+||.++. . ++|+++++++. .+.+... ...++.+...+.++.++++.+.+
T Consensus 182 -~~~~~~--~~~di~~~s~sK~~g~-~-g~G~~~~~~~~--~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~ 254 (382)
T 4eb5_A 182 -EVDVEK--IGADMLTISSNDIYGP-K-GVGALWIRKEA--KLQPVILGGGQENGLRSGSENVPSIVGFGKAAEITAMEW 254 (382)
T ss_dssp -CCCHHH--HTCSEEEEETGGGTCC-S-SCEEEEEETTC--CCCCSSCSSCTGGGTSCSCCCHHHHHHHHHHHHHHHHHH
T ss_pred -ccCccc--cCCCEEEeehHHhcCC-C-ceEEEEEcccc--ccCceecCCCccccccCCCccHHHHHHHHHHHHHHHHhH
Confidence 111111 234655 67797542 2 46788777653 2222111 12335566777777777876544
Q ss_pred hcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEE---EEeeeEEEEeccCCCchhHHHHHHHHHHCCeEeccCC-------
Q 017259 248 EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVR---GRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTH------- 317 (374)
Q Consensus 248 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~---~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~------- 317 (374)
+++.++++++.+++.+.|++ +|++....+ ..+.++++.++.. +..++.+.|.++||.++++.
T Consensus 255 ~~~~~~~~~~~~~l~~~L~~----~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~l~~~gi~v~~g~~~~~~~~ 326 (382)
T 4eb5_A 255 REEAERLRRLRDRIIDNVLK----IEESYLNGHPEKRLPNNVNVRFSYI----EGESIVLSLDMAGIQASTGSACSSKTL 326 (382)
T ss_dssp HHHHHHHHHHHHHHHHHHTT----STTEEECSCSSSBCTTEEEEEETTS----CHHHHHHHHHHHTCBCBCCCGGGTSSC
T ss_pred HHHHHHHHHHHHHHHHHHhh----CCCeEEeCCcccCCCCEEEEEeCCc----CHHHHHHHHHHCCEEEeccccccCCCC
Confidence 23445555555666555544 322211111 1255777777632 57889999999999998753
Q ss_pred ----------------CCEEEEecCCCCCHHHHHHHHHHHHHHHhccCCc
Q 017259 318 ----------------DTIVRLTPPLSISSNELQEGSKALHDVLELDLPK 351 (374)
Q Consensus 318 ----------------~~~lRi~~~~~~~~e~i~~~~~~l~~~~~~~~~~ 351 (374)
.+++|++++...+++++++++++|+++++ ++..
T Consensus 327 ~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~-~~~~ 375 (382)
T 4eb5_A 327 QPSHVLMACGLKHEEAHGTLLLTLGRYNTDEDVDRLLEVLPGVIE-RLRS 375 (382)
T ss_dssp CCCHHHHHTTCCHHHHTTEEEEECCTTCCHHHHHHHHHHHHHHHH-HHHH
T ss_pred cccHHHHHcCCChhccCCeEEEECCCCCCHHHHHHHHHHHHHHHH-HHHH
Confidence 47999998888899999999999999998 6643
No 152
>3ndn_A O-succinylhomoserine sulfhydrylase; seattle structural genomics center for infectious disease, S mycobacterium, PLP, schiff base; HET: LLP; 1.85A {Mycobacterium tuberculosis}
Probab=99.93 E-value=3.1e-26 Score=216.11 Aligned_cols=293 Identities=17% Similarity=0.146 Sum_probs=196.8
Q ss_pred cccCcCCCCCcHHHHHHHHhcccCCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCccccccccc
Q 017259 12 TLSSRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMS 91 (374)
Q Consensus 12 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~ 91 (374)
.+.++.+.++..++|+++|++++|.+++++++||++|++.+++.+ .++| |+|++.+++|++.........
T Consensus 72 ~~~y~r~~~p~~~~l~~~la~~~g~~~~~~~~sG~~Ai~~al~~l-----~~~G-----d~Vi~~~~~y~~~~~~~~~~~ 141 (414)
T 3ndn_A 72 HYVYSRYGNPTVSVFEERLRLIEGAPAAFATASGMAAVFTSLGAL-----LGAG-----DRLVAARSLFGSCFVVCSEIL 141 (414)
T ss_dssp CCCBTTTCCHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHTT-----CCTT-----CEEEEESCCCHHHHHHHHTHH
T ss_pred CcCcCCCCChHHHHHHHHHHHHHCCCcEEEECCHHHHHHHHHHHH-----hCCC-----CEEEEcCCccchHHHHHHHHH
Confidence 344566778899999999999999999999999999999999877 5677 999999999988544332210
Q ss_pred CCccccccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEeccc
Q 017259 92 CDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQ 171 (374)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~ 171 (374)
. .....+..++.+|+++++++++ ++++++++++++|++|.+.+ +++|.++|++||++||+||+|
T Consensus 142 ~---------~~g~~~~~v~~~d~~~l~~ai~---~~t~~v~le~p~NptG~~~~----l~~i~~la~~~g~~livDe~~ 205 (414)
T 3ndn_A 142 P---------RWGVQTVFVDGDDLSQWERALS---VPTQAVFFETPSNPMQSLVD----IAAVTELAHAAGAKVVLDNVF 205 (414)
T ss_dssp H---------HTTCEEEEECTTCHHHHHHHTS---SCCSEEEEESSCTTTCCCCC----HHHHHHHHHHTTCEEEEECTT
T ss_pred H---------HcCcEEEEeCCCCHHHHHHhcC---CCCeEEEEECCCCCCCcccc----HHHHHHHHHHcCCEEEEECCC
Confidence 0 0113456667779999999987 57899999999999999988 999999999999999999999
Q ss_pred cCCcccccCcccccCCCCCcEEEecccccC-C-ccchhhheeCHHHHh-hcCCCCCCCCCCCCHHHHHHHHHHHHHHhhh
Q 017259 172 SGLARSGRMLASDWEEVRPDMVILGKALGG-G-VIPVSAVLADKEVML-CIQPGEHGSTFGGNPLASAVAIASLDVIRDE 248 (374)
Q Consensus 172 ~~~~~~g~~~~~~~~~~~~d~~s~sK~~~~-G-~~~~G~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~aa~~al~~~~~~ 248 (374)
+.. ....+ ..++.+..+.|+||.+++ | + ++|+++++++.+. .++..........+++.++++...++.+.
T Consensus 206 ~~~-~~~~~---~~~g~div~~S~sK~l~~~G~~-~~G~vv~~~~~~~~~l~~~~~~~g~~~~~~~a~~~~~~l~~l~-- 278 (414)
T 3ndn_A 206 ATP-LLQQG---FPLGVDVVVYSGTKHIDGQGRV-LGGAILGDREYIDGPVQKLMRHTGPAMSAFNAWVLLKGLETLA-- 278 (414)
T ss_dssp THH-HHCCC---GGGTCSEEEEETTTTTTCSSCC-CCEEEEECHHHHTTHHHHHHHHHCCCCCHHHHHHHHHHGGGHH--
T ss_pred ccc-ccCCc---hhcCCCeEeccCCccccCCCCc-eEEEEEECHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHH--
Confidence 721 11111 123343445588899986 6 5 8899999887655 44421111122335665555555444332
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHhCCCceee-----------------EEEEeeeEEEEeccCCC--chhHHHHHHHHHHC
Q 017259 249 KLAERSAHLGEELRQHLFKIQQQFPNYVKE-----------------VRGRGLFNAVEFDKTAL--PVSAYDICLKMKER 309 (374)
Q Consensus 249 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-----------------~~~~g~~~~~~~~~~~~--~~~~~~~~~~l~~~ 309 (374)
...++..++.+++.+.|++. |.+... .++.|.+++|.++.... ......|.+.|...
T Consensus 279 ~r~~~~~~~a~~l~~~L~~~----p~v~~v~~p~l~~~p~~~~~~~~~~g~G~~l~~~l~~~~~~~~~~~~~~~~~l~~~ 354 (414)
T 3ndn_A 279 IRVQHSNASAQRIAEFLNGH----PSVRWVRYPYLPSHPQYDLAKRQMSGGGTVVTFALDCPEDVAKQRAFEVLDKMRLI 354 (414)
T ss_dssp HHHHHHHHHHHHHHHHHHTC----TTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEECSCGGGHHHHHHHHHHHCSSS
T ss_pred HHHHHHHHHHHHHHHHHhcC----CCEeEEECCCCCCCcCHHHHHHhCCCCceEEEEEEcCCccccHHHHHHHHHhCccc
Confidence 23455555666666655543 221111 12357899999964200 11466677777666
Q ss_pred CeEeccC---------------------------CCCEEEEecCCCCCHHHHHHHHHHHHHHH
Q 017259 310 GILAKPT---------------------------HDTIVRLTPPLSISSNELQEGSKALHDVL 345 (374)
Q Consensus 310 Gi~v~~~---------------------------~~~~lRi~~~~~~~~e~i~~~~~~l~~~~ 345 (374)
++.++.+ .++.+|++++. |+.+.+++.|++++
T Consensus 355 ~~~~s~G~~~sl~~~p~~~~~~~~~~~~~~~~g~~~~~iRlsvG~----e~~~dli~dl~~al 413 (414)
T 3ndn_A 355 DISNNLGDAKSLVTHPATTTHRAMGPEGRAAIGLGDGVVRISVGL----EDTDDLIADIDRAL 413 (414)
T ss_dssp EECSCCSCSSCEEECGGGTTTCTTHHHHHHHTTCCTTEEEEECCS----SCHHHHHHHHHHHH
T ss_pred eEcCCCCCCCceeeCccccccccCCHHHHHhcCCCCCeEEEEeCc----CCHHHHHHHHHHhh
Confidence 6544322 25789999553 55566667776665
No 153
>1svv_A Threonine aldolase; structural genomics, structural genomics of pathogenic proto SGPP, protein structure initiative, PSI; 2.10A {Leishmania major} SCOP: c.67.1.1
Probab=99.93 E-value=2e-25 Score=206.66 Aligned_cols=291 Identities=11% Similarity=0.023 Sum_probs=190.4
Q ss_pred cCCCCCcHHHHHHHHhcccCC--CeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccc--ccccc
Q 017259 16 RAFYNDKFPVFAERLTSMFGY--DMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLA--AISMS 91 (374)
Q Consensus 16 ~~~~~~~~~~l~~~l~~~~~~--~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~--~~~~~ 91 (374)
+.+..+.++++++++++++|. +++++++||++|++.+++.+ .++| |+|++.+++|++.... ....+
T Consensus 44 ~~g~~~~~~~~~~~l~~~~g~~~~~v~~~~g~t~a~~~~~~~~-----~~~g-----d~vl~~~~~~~~~~~~~~~~~~g 113 (359)
T 1svv_A 44 GYGQDSHCAKAARLIGELLERPDADVHFISGGTQTNLIACSLA-----LRPW-----EAVIATQLGHISTHETGAIEATG 113 (359)
T ss_dssp STTCSHHHHHHHHHHHHHHTCTTSEEEEESCHHHHHHHHHHHH-----CCTT-----EEEEEETTSHHHHSSTTHHHHTT
T ss_pred cccccHHHHHHHHHHHHHhCCCCccEEEeCCchHHHHHHHHHH-----hCCC-----CEEEEcccchHHHHHHHHHhcCC
Confidence 445677888999999998764 47999999999999999988 4567 9999999999876553 21111
Q ss_pred CCccccccCCCCCCCceeccCC----CHHHHHHHHHhc----CCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCC
Q 017259 92 CDNEAIRGFGPLLPGHLKVDFG----DITALEKIFKES----GDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNI 163 (374)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~----d~~~le~~l~~~----~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i 163 (374)
..+..++.+ |+++|++++++. +.++++++++++ +++|.+. +.+++++|.++|++||+
T Consensus 114 -------------~~~~~v~~~~~~~d~~~l~~~l~~~~~~~~~~~~~v~~~~~-~ptG~~~-~~~~l~~i~~~~~~~~~ 178 (359)
T 1svv_A 114 -------------HKVVTAPCPDGKLRVADIESALHENRSEHMVIPKLVYISNT-TEVGTQY-TKQELEDISASCKEHGL 178 (359)
T ss_dssp -------------CCEEEECCTTSCCCHHHHHHHHHHSCSTTSCEEEEEEEESS-CTTSCCC-CHHHHHHHHHHHHHHTC
T ss_pred -------------CeeEEEeCCCCeecHHHHHHHHHHHHhccCCCceEEEEEcC-CCCceec-CHHHHHHHHHHHHHhCC
Confidence 112222222 699999999853 224899999887 6788777 68999999999999999
Q ss_pred EEEEeccccCC--cccccCcccccCCCCCcEEE--ecccccCCccchhhheeCHHHHhhcCCCC--CCCCCCCCHHHHHH
Q 017259 164 LMIADEIQSGL--ARSGRMLASDWEEVRPDMVI--LGKALGGGVIPVSAVLADKEVMLCIQPGE--HGSTFGGNPLASAV 237 (374)
Q Consensus 164 ~li~Dea~~~~--~~~g~~~~~~~~~~~~d~~s--~sK~~~~G~~~~G~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~a 237 (374)
++|+||+|.+| +..+...........+|+.+ .+|. ++.. +.|+++.++++.+.+.... .+.++..+.....+
T Consensus 179 ~li~De~~~~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~-g~~~-~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (359)
T 1svv_A 179 YLFLDGARLASALSSPVNDLTLADIARLTDMFYIGATKA-GGMF-GEALIILNDALKPNARHLIKQRGALMAKGWLLGIQ 256 (359)
T ss_dssp EEEEECTTHHHHHTSTTCCCCHHHHHHHCSEEEEECTTT-TCSS-CEEEEECSGGGCTTHHHHHHHTTCCCTTTHHHHHH
T ss_pred EEEEEccchhhhhcCCCcchhhhhhhhcCCEEEEecccC-CCCC-ceEEEEEcccHHHHHHHHHhcCCcccccchhhHHH
Confidence 99999999544 22221101000012346654 4574 3334 6678888888776665321 22333323333333
Q ss_pred HHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCchhHHHHHHHHHHC-CeEecc-
Q 017259 238 AIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKER-GILAKP- 315 (374)
Q Consensus 238 a~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~-Gi~v~~- 315 (374)
..++++...-+++.++++++++++.+.| +.. ++....+..+.++++.++ .++.+.|.++ ||.+.+
T Consensus 257 ~~~~l~~~~~~~~~~~~~~~~~~l~~~L-~~~----~~~~~~~~~~~~~~~~~~--------~~~~~~l~~~~gi~v~~~ 323 (359)
T 1svv_A 257 FEVLMKDNLFFELGAHSNKMAAILKAGL-EAC----GIRLAWPSASNQLFPILE--------NTMIAELNNDFDMYTVEP 323 (359)
T ss_dssp HHHHTSTTHHHHHHHHHHHHHHHHHHHH-HHT----TCCBSSCCSSSEECBEEE--------HHHHHHHTTTEECEEEEE
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHh-ccC----CeEEccCCccceEEEEcC--------HHHHHHHHHhcCEEEEec
Confidence 2222221111245667777777777777 331 221111223455555443 4788999999 998854
Q ss_pred --CCCCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 017259 316 --THDTIVRLTPPLSISSNELQEGSKALHDVLE 346 (374)
Q Consensus 316 --~~~~~lRi~~~~~~~~e~i~~~~~~l~~~~~ 346 (374)
...+++|++++...+++++++++++|+++++
T Consensus 324 ~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~ 356 (359)
T 1svv_A 324 LKDGTCIMRLCTSWATEEKECHRFVEVLKRLVA 356 (359)
T ss_dssp ETTTEEEEEEECCTTCCHHHHHHHHHHHHHC--
T ss_pred ccCCCceEEEEccCcCCHHHHHHHHHHHHHHHh
Confidence 2457999999888999999999999998876
No 154
>3ke3_A Putative serine-pyruvate aminotransferase; structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP; 2.20A {Psychrobacter arcticus 273-4}
Probab=99.93 E-value=1.5e-25 Score=209.48 Aligned_cols=301 Identities=12% Similarity=0.043 Sum_probs=203.7
Q ss_pred CcHHHHHHHHhcccCCC-eEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccc-cCCc-c-c
Q 017259 21 DKFPVFAERLTSMFGYD-MVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISM-SCDN-E-A 96 (374)
Q Consensus 21 ~~~~~l~~~l~~~~~~~-~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~-~~~~-~-~ 96 (374)
+.+++++++++++++.+ .+++++||++|++.++..+ .+| |+|++.+++||+........ .+.. . .
T Consensus 35 ~~~~~~~~~l~~~~~~~~~v~~~~sgt~a~~~~~~~~------~~g-----d~vi~~~~~~~~~~~~~~~~~~g~~~~~~ 103 (379)
T 3ke3_A 35 EVMNDLLSNLKTVYNAEAAVIIPGSGTYGMEAVARQL------TID-----EDCLIIRNGWFSYRWTQILEKGKFAKSST 103 (379)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHHHH------CTT-----CEEEEEECSHHHHHHHHHHHHHCCSSEEE
T ss_pred HHHHHHHHHHHHHhCCCCEEEEcCChhHHHHHHHHhC------CCC-----CeEEEEeCCchhHHHHHHHHHhCCCCceE
Confidence 45677888888888765 5788999999999987544 356 99999999998864322211 1100 0 0
Q ss_pred cccCCCCC-CCc-eeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEeccccCC
Q 017259 97 IRGFGPLL-PGH-LKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGL 174 (374)
Q Consensus 97 ~~~~~~~~-~~~-~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~~~ 174 (374)
........ .+. ......|++++++++++. +++++++..+.+++|.+. +.+++++|.++|++||+++|+|++++
T Consensus 104 ~~~~~~~g~~~~~~~~~~~d~~~l~~~i~~~--~~~~v~~~~~~~~~G~~~-~~~~l~~i~~~~~~~~~~li~D~~~~-- 178 (379)
T 3ke3_A 104 VLTAERTEDTEAPKPFAPVDIETAVAKIKED--KSAIVYAPHVETSSGIIL-SEEYIKALSEAVHSVGGLLVIDCIAS-- 178 (379)
T ss_dssp EEECEESSCCSSCCCEECCCHHHHHHHHHHH--TCSEEEEESEETTTTEEC-CHHHHHHHHHHHHHTTCEEEEECTTC--
T ss_pred EEeccccccccccCCCCCCCHHHHHHHHhhc--CCcEEEEEeecCCCceeC-CHHHHHHHHHHHHHcCCEEEEEeccc--
Confidence 00000000 000 000124899999999643 577888888888888777 68899999999999999999999987
Q ss_pred cccccCcccccCCCCCcEEEecccccCCccchhhheeCHHHHhhcCCCC----------------------CCCCCCCCH
Q 017259 175 ARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGE----------------------HGSTFGGNP 232 (374)
Q Consensus 175 ~~~g~~~~~~~~~~~~d~~s~sK~~~~G~~~~G~~~~~~~~~~~~~~~~----------------------~~~~~~~~~ 232 (374)
+ +..+....++.+..+.+++|+++++. ++|+++.++++.+.+.+.. ...+++.+.
T Consensus 179 g--~~~~~~~~~~~d~~~~s~~K~l~~~~-g~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~t~~~ 255 (379)
T 3ke3_A 179 G--CVWLDMKELGIDVLISAPQKGWSSTP-CAGLVMLSAAAIKKVESTESNCFSLDLKQWLTIMRAYENGGHAYHATMPT 255 (379)
T ss_dssp T--TCCCCHHHHTCSEEEECTTTTTCSCC-CEEEEEECHHHHHHHHTCCCSCSTTCHHHHHHHHHHHHTTSCCCSSCCCH
T ss_pred C--CccccccccCCCEEEecchhhcCCCC-ceEEEEECHHHHHhhhcCCCCceeecHHHHHHHHHhhhccCCCCCCCCCH
Confidence 2 23333333444333445569998877 7899999998877665311 012236788
Q ss_pred HHHHHHHHHHHHHhhh---cHHHHHHHHHHHHHHHHHHHHHhCCCceee-EEEEeeeEEEEeccCCCchhHHHHHHHHHH
Q 017259 233 LASAVAIASLDVIRDE---KLAERSAHLGEELRQHLFKIQQQFPNYVKE-VRGRGLFNAVEFDKTALPVSAYDICLKMKE 308 (374)
Q Consensus 233 ~~~~aa~~al~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~ 308 (374)
..++++.++++.+.++ ++.++.+++.+++++.|+++... .... ....+.+..+..+ . ....+.+.|.+
T Consensus 256 ~~~~a~~aal~~~~~~g~~~~~~~~~~l~~~l~~~l~~~g~~---~~~~~~~~~~~i~~~~~~-~----~~~~~~~~L~~ 327 (379)
T 3ke3_A 256 DSLRQFRDAILEAKEIGFDILRDAQWELGNRVRKVLTDKGIE---SVAAEGFEAPGVVVSYTE-R----DDMHKGSAFAE 327 (379)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCC---BSBCTTCBCSSEEEEECS-C----HHHHSSHHHHH
T ss_pred HHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHcCCE---ecCCccccCceEEEEccC-C----cchHHHHHHHH
Confidence 8888888999887654 56677778888888888776321 1111 1112333333332 2 22234778889
Q ss_pred CCeEeccCC---------CCEEEEecCCCCCHHHHHHHHHHHHHHHhccC
Q 017259 309 RGILAKPTH---------DTIVRLTPPLSISSNELQEGSKALHDVLELDL 349 (374)
Q Consensus 309 ~Gi~v~~~~---------~~~lRi~~~~~~~~e~i~~~~~~l~~~~~~~~ 349 (374)
+||.+.++. .+.+||+++..+|++|+++++++|+++++ ++
T Consensus 328 ~Gi~v~~g~~~~~~~~~~~~~lRis~~~~~t~~di~~~~~~l~~~l~-~~ 376 (379)
T 3ke3_A 328 AGLQIAAGVPLKVGEPDNFKTFRLGLFGLDKLTDIDGTVERFEKALD-EV 376 (379)
T ss_dssp TTCCCEECCCCSSCCCTTCCEEEEECCSHHHHTCHHHHHHHHHHHHH-HH
T ss_pred CCeEEeCCccccccccCcCCEEEEeCCcCCCHHHHHHHHHHHHHHHH-Hh
Confidence 999988763 58999999988999999999999999987 54
No 155
>1mdo_A ARNB aminotransferase; type 1 aminotransferase fold; HET: MSE PMP; 1.70A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1mdx_A* 1mdz_A*
Probab=99.93 E-value=6.3e-25 Score=206.08 Aligned_cols=301 Identities=15% Similarity=0.156 Sum_probs=202.4
Q ss_pred hHHHHHHHhccccCcCCCCCcHHHHHHHHhcccCCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCC
Q 017259 2 KALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFH 81 (374)
Q Consensus 2 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yh 81 (374)
+++.+++.+..+ .+.+...++++.++++++.+++++++||++|++.+++++. ..+| |+|++..++|+
T Consensus 24 ~a~~~~~~~~~~----~~~~~~~~l~~~la~~~~~~~~~~~~~gt~al~~~~~~~~----~~~g-----d~Vl~~~~~~~ 90 (393)
T 1mdo_A 24 AAVKTVLDSGWI----TTGPKNQELEAAFCRLTGNQYAVAVSSATAGMHIALMALG----IGEG-----DEVITPSMTWV 90 (393)
T ss_dssp HHHHHHHHHTCC----SSSHHHHHHHHHHHHHHCCSEEEEESCHHHHHHHHHHHTT----CCTT-----CEEEEESSSCH
T ss_pred HHHHHHHhcCCc----CCChHHHHHHHHHHHHhCCCcEEEecChHHHHHHHHHHcC----CCCC-----CEEEeCCCccH
Confidence 455666655432 3467788999999999999999999999999999998873 3456 99999999998
Q ss_pred CcccccccccCCccccccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhc
Q 017259 82 GRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKY 161 (374)
Q Consensus 82 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~ 161 (374)
+....+...+...... +...+. -..|+++++++++ ++++++++++ ++|...+ +++|.++|++|
T Consensus 91 ~~~~~~~~~g~~~~~v----~~~~~~---~~~d~~~l~~~l~---~~~~~v~~~~---~~G~~~~----~~~i~~l~~~~ 153 (393)
T 1mdo_A 91 STLNMIVLLGANPVMV----DVDRDT---LMVTPEHIEAAIT---PQTKAIIPVH---YAGAPAD----LDAIYALGERY 153 (393)
T ss_dssp HHHHHHHHTTCEEEEE----CBCTTT---CCBCHHHHHHHCC---TTEEEECCBC---GGGCCCC----HHHHHHHHHHH
T ss_pred hHHHHHHHCCCEEEEE----eccCCc---CCCCHHHHHHhcC---CCceEEEEeC---CCCCcCC----HHHHHHHHHHc
Confidence 8654443322211111 110000 0127899998887 4688888765 4677776 99999999999
Q ss_pred CCEEEEecccc-CCcccccCcccccCCCCCcEE--Eec--ccccCCccchhhheeC-HHHHhhcCCCCC-----------
Q 017259 162 NILMIADEIQS-GLARSGRMLASDWEEVRPDMV--ILG--KALGGGVIPVSAVLAD-KEVMLCIQPGEH----------- 224 (374)
Q Consensus 162 ~i~li~Dea~~-~~~~~g~~~~~~~~~~~~d~~--s~s--K~~~~G~~~~G~~~~~-~~~~~~~~~~~~----------- 224 (374)
|+++|+||+|+ +..+.+.. .+. .|++ |++ |++++| ++|+++.+ +++.+.+.....
T Consensus 154 ~~~li~D~a~~~g~~~~~~~-----~~~-~d~~~~S~~k~K~l~~~--~~g~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 225 (393)
T 1mdo_A 154 GIPVIEDAAHATGTSYKGRH-----IGA-RGTAIFSFHAIKNITCA--EGGIVVTDNPQFADKLRSLKFHGLGVDAWDRQ 225 (393)
T ss_dssp TCCBCEECTTCTTCEETTEE-----TTS-SSEEEEECCTTSSSCSS--SCEEEEESCHHHHHHHHHHTBTTEECC-----
T ss_pred CCeEEEECccccCCeECCee-----cCC-CCeEEEeCCCCCccccc--cceEEEeCCHHHHHHHHHHHhcCCcccchhhh
Confidence 99999999998 34333322 122 6766 455 888764 68888886 677665532111
Q ss_pred -------------CCCCCCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHhCCCcee--eEEEEeeeEEEE
Q 017259 225 -------------GSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVK--EVRGRGLFNAVE 289 (374)
Q Consensus 225 -------------~~~~~~~~~~~~aa~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--~~~~~g~~~~~~ 289 (374)
+.++..+.+.++++...++.+ +++.++.+++.+++.+.|+++...++ ... ..+..+.++++.
T Consensus 226 ~~~~~~~~~~~~~g~~~~~~~~~~a~~~~~l~~~--~~~~~~~~~~~~~l~~~L~~~~~~~~-~~~~~~~~~~~~~~~v~ 302 (393)
T 1mdo_A 226 SGGRAPQAEVLAPGYKYNLPDLNAAIALAQLQKL--DALNARRAAIAAQYHQAMADLPFQPL-SLPSWEHIHAWHLFIIR 302 (393)
T ss_dssp ------CCEESSCCCBCCCCHHHHHHHHHHHHTH--HHHHHHHHHHHHHHHHHHHTSSCEEC-CCCSSCEECCCSCEEEE
T ss_pred cccccccccccccCccCCCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhcCCcccc-cCCCCCCCceeEEEEEE
Confidence 111334666666666655543 24556666666667666655321100 000 123345578887
Q ss_pred ecc---CCCchhHHHHHHHHHHCCeEeccCC-------------------------CCEEEEecCCCCCHHHHHHHHHHH
Q 017259 290 FDK---TALPVSAYDICLKMKERGILAKPTH-------------------------DTIVRLTPPLSISSNELQEGSKAL 341 (374)
Q Consensus 290 ~~~---~~~~~~~~~~~~~l~~~Gi~v~~~~-------------------------~~~lRi~~~~~~~~e~i~~~~~~l 341 (374)
++. .. +..++.+.|.++||.++++. ...+|++++..++++|+++++++|
T Consensus 303 ~~~~~~~~---~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lRi~~~~~~t~~~i~~~~~~l 379 (393)
T 1mdo_A 303 VDEARCGI---TRDALMASLKTKGIGTGLHFRAAHTQKYYRERFPTLTLPDTEWNSERICSLPLFPDMTESDFDRVITAL 379 (393)
T ss_dssp CCHHHHSS---CHHHHHHHHHHTTBCCBCCCCCGGGSHHHHHHSTTCCCHHHHHHHTTEEEECCCTTCCHHHHHHHHHHH
T ss_pred eccccccc---CHHHHHHHHHhCCCCcccccCccccChhhhccCCccCChhHHHHHhCEEEecCCCCCCHHHHHHHHHHH
Confidence 763 22 57889999999999998743 237999988889999999999999
Q ss_pred HHHHh
Q 017259 342 HDVLE 346 (374)
Q Consensus 342 ~~~~~ 346 (374)
+++++
T Consensus 380 ~~~~~ 384 (393)
T 1mdo_A 380 HQIAG 384 (393)
T ss_dssp HHHHC
T ss_pred HHHHh
Confidence 99887
No 156
>3meb_A Aspartate aminotransferase; pyridoxal PHOS transferase, structural genomics, seattle structural genomi for infectious disease, ssgcid; HET: PLP; 1.90A {Giardia lamblia}
Probab=99.93 E-value=3e-25 Score=212.00 Aligned_cols=300 Identities=11% Similarity=0.098 Sum_probs=193.6
Q ss_pred CCcHHHHHHHHhccc-CC-------CeEEe--cCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccc-
Q 017259 20 NDKFPVFAERLTSMF-GY-------DMVLP--MNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAI- 88 (374)
Q Consensus 20 ~~~~~~l~~~l~~~~-~~-------~~~~~--~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~- 88 (374)
.....++++.+++++ |. +++++ |+||++|++.+..++.. ..+| |+|++.+|+|+++.....
T Consensus 93 ~~G~~~lr~~ia~~l~g~~~~~~~~~~i~~~~t~ggt~al~l~~~~~~~---~~~g-----d~Vlv~~p~~~~~~~~~~~ 164 (448)
T 3meb_A 93 VAGFPLFLEAAQFLMFGKDSKAAQEGRIASCQSLSGTGSLHIGFEFLHL---WMPK-----AEFYMPSTTWPNHYGIYDK 164 (448)
T ss_dssp TTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEESHHHHHHHHHHHHHHH---HCTT-----CCEEEESSCCTHHHHHHHH
T ss_pred CcchHHHHHHHHHHhcCCCccccCcCcEEEEECCcHHHHHHHHHHHHHH---hCCC-----CEEEECCCCCHhHHHHHHh
Confidence 345667777777765 43 58999 99999999986543321 4567 999999999977655544
Q ss_pred ---cccCCccccccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEE
Q 017259 89 ---SMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILM 165 (374)
Q Consensus 89 ---~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~l 165 (374)
..+..........+. .+.. -|++++++++++.+++++++++++++|++|.+. +.+.+++|.++|++||+++
T Consensus 165 ~~~~~G~~v~~~~~~~~~-~~~~----~d~e~l~~~l~~~~~~~~~v~~~~p~NPtG~~~-~~~~l~~i~~l~~~~~~~l 238 (448)
T 3meb_A 165 VFNKLKVPYKEYTYLRKD-GELE----IDFSNTKKDIQSAPEKSIFLFHACAHNPSGIDF-TEAQWKELLPIMKEKKHIA 238 (448)
T ss_dssp HHCTTTSCCEEECCBCTT-SCSS----BCHHHHHHHHHHSCTTCEEEEESSSCTTTCCCC-CHHHHHHHHHHHHHHTCEE
T ss_pred hHHhCCCeEEEEeccccc-cCCC----cCHHHHHHHHHhCCCCcEEEEeCCCCCCCCcCC-CHHHHHHHHHHHHHCCCEE
Confidence 333221111100000 0001 179999999987655788888888999999877 8999999999999999999
Q ss_pred EEeccccCCccccc---CcccccC-CCCCc---EEEeccccc-CCccchhhh--ee--------C-H----HHHhhcCCC
Q 017259 166 IADEIQSGLARSGR---MLASDWE-EVRPD---MVILGKALG-GGVIPVSAV--LA--------D-K----EVMLCIQPG 222 (374)
Q Consensus 166 i~Dea~~~~~~~g~---~~~~~~~-~~~~d---~~s~sK~~~-~G~~~~G~~--~~--------~-~----~~~~~~~~~ 222 (374)
|+||+|.++++.+. ......+ +..++ +.||||.++ .|+ |+||+ ++ . + ++.+.+...
T Consensus 239 i~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~-RiG~l~~v~~~~~~~~~~~~~~~~~l~~~l~~~ 317 (448)
T 3meb_A 239 FFDSAYQGFATGSFEADAFAVRMFVDAGVEVLVAQSFSKNFGLYGE-RIGCLHVVHAGVEGSVEKNKALSAAMVSGMTLQ 317 (448)
T ss_dssp EEEESCTTTSSSCHHHHTHHHHHHHHTTCCEEEEEECTTTSCCGGG-CCEEEEEECCCCSSSHHHHHHHHHHHHHHHHHH
T ss_pred EEecccccccCCCcccCchhHHHHhhcCCcEEEEecccccCCCccc-cceeeeeeeccccccccCCHHHHHHHHHHHHHH
Confidence 99999998865441 1111111 22334 448999999 699 99997 55 3 4 555555433
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHh--------hhcHHHHHHHHHHHHHHHHHHHHHhCCC-----ceeeEEE-EeeeEEE
Q 017259 223 EHGSTFGGNPLASAVAIASLDVIR--------DEKLAERSAHLGEELRQHLFKIQQQFPN-----YVKEVRG-RGLFNAV 288 (374)
Q Consensus 223 ~~~~~~~~~~~~~~aa~~al~~~~--------~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~~~~~~~-~g~~~~~ 288 (374)
....+.+.+.+++.++.++++... -++..++++++++++.+.|+++. +++ ......+ .+.+.|.
T Consensus 318 ~~~~~~~~~~~~~~a~~~~l~~~~l~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~--~~~~~~~~~~~~~~~~~g~~~~~ 395 (448)
T 3meb_A 318 IRKTWSMSAIHGAYIVQVIVHDKRLLQMFYDNVKEMSARIHRMRSLLHASLAKRK--TPGPGSKGTWDHILTAIGMFTFT 395 (448)
T ss_dssp HHTTTSSCCHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--CCCSTTTCCCTHHHHCCSSEEEC
T ss_pred HhcccCCccHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC--CCCcCcccccceeCCCceEEEec
Confidence 234445667888887777764321 12345556666666666665541 121 0111122 3444443
Q ss_pred EeccCCCchhHHHHHHHH-HHCCeEeccCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhccC
Q 017259 289 EFDKTALPVSAYDICLKM-KERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVLELDL 349 (374)
Q Consensus 289 ~~~~~~~~~~~~~~~~~l-~~~Gi~v~~~~~~~lRi~~~~~~~~e~i~~~~~~l~~~~~~~~ 349 (374)
.+ . .+++..| .++||.+.++.. ||++. ..+++++++++++|+++++ .+
T Consensus 396 ~~-------~-~~~~~~ll~~~gV~v~~G~g---Ris~a-~~~~~~i~~~~~~l~~~l~-~~ 444 (448)
T 3meb_A 396 GL-------T-PEHVDYLKEKWSIYLVKAGG---RMSMC-GLTESNCDYVAEAIHDAVT-KL 444 (448)
T ss_dssp CC-------C-HHHHHHHHHHHCEEECSGGG---EEEGG-GCCTTTHHHHHHHHHHHHH-HS
T ss_pred CC-------C-HHHHHHHHHhCCEEEeCCCc---EEEEe-cCCHHHHHHHHHHHHHHHH-hc
Confidence 22 2 3556666 467999998642 99964 3367789999999999997 54
No 157
>3vax_A Putative uncharacterized protein DNDA; desulfurase, transferase; HET: PLP; 2.40A {Streptomyces lividans}
Probab=99.93 E-value=9.6e-26 Score=212.11 Aligned_cols=286 Identities=12% Similarity=0.053 Sum_probs=178.5
Q ss_pred CCcHHHHHHHHhcccCCC--eEEecCChHHHHHHHHHHHHHcccccccCCCCcc-EEEEeccCCCCcccccccccCCccc
Q 017259 20 NDKFPVFAERLTSMFGYD--MVLPMNTGAEGVETALKLARKWGYVKKKFSIDEA-IIVSCCGCFHGRTLAAISMSCDNEA 96 (374)
Q Consensus 20 ~~~~~~l~~~l~~~~~~~--~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~-~vi~~~~~yhg~~~~~~~~~~~~~~ 96 (374)
.+..++++++++++++.+ ++++++|+++|++.+++++..+. .++| | +|++.++.|++.......+... +
T Consensus 62 ~~~~~~l~~~la~~~~~~~~~v~~~~g~t~al~~~~~~l~~~~-~~~g-----d~~Vl~~~~~~~~~~~~~~~~~~~-g- 133 (400)
T 3vax_A 62 KRGVERAREYLASTVSAEPDELIFTSGATESNNIALLGLAPYG-ERTG-----RRHIITSAIEHKAVLEPLEHLAGR-G- 133 (400)
T ss_dssp HHHHHHHHHHHHHHTTCCGGGEEEESCHHHHHHHHHHTTHHHH-HHHT-----CCEEEEETTSCHHHHHHHHHHHTT-T-
T ss_pred HHHHHHHHHHHHHHcCCCCCcEEEeCCHHHHHHHHHHHHHHhh-ccCC-----CCEEEECccccHhHHHHHHHHHhc-C-
Confidence 455788999999988765 89999999999999999884211 2566 8 9999999887654443333111 1
Q ss_pred cccCCCCCCCceeccCC-----CHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEeccc
Q 017259 97 IRGFGPLLPGHLKVDFG-----DITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQ 171 (374)
Q Consensus 97 ~~~~~~~~~~~~~~~~~-----d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~ 171 (374)
..+..++.+ |+++|+++++ ++++++++++++|++|.+.+ +++|.++|++||++||+||+|
T Consensus 134 --------~~~~~v~~~~~~~~d~~~l~~~i~---~~~~~v~~~~~~nptG~~~~----l~~i~~la~~~~~~li~D~a~ 198 (400)
T 3vax_A 134 --------FEVDFLTPGPSGRISVEGVMERLR---PDTLLVSLMHVNNETGVIQP----VAELAQQLRATPTYLHVDAAQ 198 (400)
T ss_dssp --------CEEEEECCCTTCCCCHHHHHTTCC---TTEEEEECCSBCTTTCBBCC----HHHHHHHHTTSSCEEEEECTT
T ss_pred --------CeEEEEccCCCCCcCHHHHHHhcC---CCceEEEEECCCCCceeeCc----HHHHHHHHHhcCCEEEEEhhh
Confidence 112222222 7899988886 57999999999999999998 999999999999999999999
Q ss_pred cCCcccccCcccccCCCCCcEE--EecccccCCccchhhhe-eCH-HHH---hhcCCCCC-------CCCCCCCHHHHHH
Q 017259 172 SGLARSGRMLASDWEEVRPDMV--ILGKALGGGVIPVSAVL-ADK-EVM---LCIQPGEH-------GSTFGGNPLASAV 237 (374)
Q Consensus 172 ~~~~~~g~~~~~~~~~~~~d~~--s~sK~~~~G~~~~G~~~-~~~-~~~---~~~~~~~~-------~~~~~~~~~~~~a 237 (374)
+.. .. ....... +|++ |++|. .|+. ++|+++ .++ .+. ..+.+... ....+.+..++++
T Consensus 199 ~~~-~~----~~~~~~~-~d~~~~s~~K~-~g~~-g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 270 (400)
T 3vax_A 199 GYG-KV----PGDLTTP-IDMISISGHKI-GAPK-GVGALVTRRREEMDDERVPLEPIMFGGGQERKLRPGTLPVPLIMG 270 (400)
T ss_dssp TTT-TS----GGGGGSC-CSEEEEETGGG-TSCS-SCEEEEECBCSSSTTCBCCCCCSSCSSCTGGGTSCSCCCHHHHHH
T ss_pred hcC-CC----CcChhhc-CcEEEEeHHHh-CCCC-ceEEEEEecchhccccccccCceecCCCceeeeecCCCCHHHHHH
Confidence 721 11 1112223 6766 55694 4444 567776 655 111 12222211 1234557777777
Q ss_pred HHHHHHHHhh--hcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEE---EEeeeEEEEeccCCCchhHHHHHHHHHHCCeE
Q 017259 238 AIASLDVIRD--EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVR---GRGLFNAVEFDKTALPVSAYDICLKMKERGIL 312 (374)
Q Consensus 238 a~~al~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~---~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~ 312 (374)
+.++++.+.+ +++.++++++.+++.+.|+ . +++..... ..+.++++.++.. +..++.+.|. +||.
T Consensus 271 ~~~al~~~~~~~~~~~~~~~~~~~~l~~~L~-~----~~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~~~L~-~gi~ 340 (400)
T 3vax_A 271 LAEAAKIFEAEHAQWQVAAQDLRSRLLAGLA-S----TSFQVNGDQDHVVPHILNLSFEDV----DAEAFLVTLK-DLVA 340 (400)
T ss_dssp HHHHHHHHHHSHHHHHHHHHHHHHHHHHHHT-T----TTCEECSCTTSBCTTEEEEECTTC----CHHHHHHHHH-HHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHhhC-C----CCEEEeCCcccCCCCEEEEEeCCC----CHHHHHHHHh-cCcE
Confidence 7788876644 3556666666777766665 2 22221111 1235667666643 6789999999 9998
Q ss_pred eccCC-----------------------CCEEEEec-CCCCCHHHHHHHHHHHHHHHh
Q 017259 313 AKPTH-----------------------DTIVRLTP-PLSISSNELQEGSKALHDVLE 346 (374)
Q Consensus 313 v~~~~-----------------------~~~lRi~~-~~~~~~e~i~~~~~~l~~~~~ 346 (374)
++++. .+++||++ +...+++++++++++|+++++
T Consensus 341 v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRls~~~~~~t~e~i~~~~~~l~~~~~ 398 (400)
T 3vax_A 341 VATGSASTSASFTPSHVLRAMGLPEEAASKSLRFSWTPGQATDLDVEELARGVAKLKP 398 (400)
T ss_dssp HTTTTEEEEEEECCHHHHHTTTCCHHHHTSEEEEEEEEC-------------------
T ss_pred EEecccccCCCCCccHHHHHcCCCccccCceEEEEccCCCCCHHHHHHHHHHHHHHhc
Confidence 87742 48999998 888899999999999998876
No 158
>1v72_A Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2.05A {Pseudomonas putida} SCOP: c.67.1.1
Probab=99.93 E-value=2.9e-25 Score=205.35 Aligned_cols=288 Identities=13% Similarity=0.065 Sum_probs=183.0
Q ss_pred CCCcHHHHHHHHhcccCCCe-EEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccc--ccccc-CCc
Q 017259 19 YNDKFPVFAERLTSMFGYDM-VLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLA--AISMS-CDN 94 (374)
Q Consensus 19 ~~~~~~~l~~~l~~~~~~~~-~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~--~~~~~-~~~ 94 (374)
..+...++++++++++|.+. +++++||++|++.+++++ .++| |+|++.+++|.+.... ..... +..
T Consensus 41 ~~~~~~~l~~~la~~~g~~~~v~~~~~gt~a~~~al~~~-----~~~g-----d~vi~~~~~~~~~~~~~~~~~~~~g~~ 110 (356)
T 1v72_A 41 TDELTAQVKRKFCEIFERDVEVFLVPTGTAANALCLSAM-----TPPW-----GNIYCHPASHINNDECGAPEFFSNGAK 110 (356)
T ss_dssp CSHHHHHHHHHHHHHHTSCCEEEEESCHHHHHHHHHHTS-----CCTT-----EEEEECTTSHHHHSSTTHHHHHTTSCE
T ss_pred cchHHHHHHHHHHHHhCCCCcEEEeCCccHHHHHHHHHh-----cCCC-----CEEEEcCccchhhhhchHHHHHhCCcE
Confidence 45677889999999887664 899999999999999877 4567 9999998875433222 22221 211
Q ss_pred cccccCCCCCCCceeccCCCHHHHHH-HHHh----cCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEec
Q 017259 95 EAIRGFGPLLPGHLKVDFGDITALEK-IFKE----SGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADE 169 (374)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~d~~~le~-~l~~----~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~De 169 (374)
.. ..+. + .. .-|++++++ ++++ ++++++++++++++ ++|.+. +.+.+++|.++|++||++||+|+
T Consensus 111 ~~---~v~~--~--~~-~~d~~~l~~~~i~~~~~~~~~~~~~v~~~~~~-~tG~~~-~~~~l~~i~~~~~~~~~~li~D~ 180 (356)
T 1v72_A 111 LM---TVDG--P--AA-KLDIVRLRERTREKVGDVHTTQPACVSITQAT-EVGSIY-TLDEIEAIGDVCKSSSLGLHMDG 180 (356)
T ss_dssp EE---ECCC--G--GG-CCCHHHHHHHTTSSTTCTTSCEEEEEEEESSC-TTSCCC-CHHHHHHHHHHHHHTTCEEEEEE
T ss_pred EE---EecC--C--CC-eEcHHHHHHHhhhcchhhccCCceEEEEEcCC-CCCccC-CHHHHHHHHHHHHHcCCeEEEEc
Confidence 10 1111 1 00 127999998 8874 12368999999875 577654 89999999999999999999999
Q ss_pred cccCCc--ccccCcccccCC--CCCcEE--EecccccCCccchh--hheeCHHHHhhcCCCC-CCCCCCCCHHHHHHHHH
Q 017259 170 IQSGLA--RSGRMLASDWEE--VRPDMV--ILGKALGGGVIPVS--AVLADKEVMLCIQPGE-HGSTFGGNPLASAVAIA 240 (374)
Q Consensus 170 a~~~~~--~~g~~~~~~~~~--~~~d~~--s~sK~~~~G~~~~G--~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~aa~~ 240 (374)
+|..+. ..+.. ....+ ...|++ ++||+ |. |+| ++++++++.+.+.... ........ +..++.+
T Consensus 181 a~~~~~~~~~~~~--~~~~~~~~~~d~~~~s~sK~---g~-~~G~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 252 (356)
T 1v72_A 181 SRFANALVSLGCS--PAEMTWKAGVDALSFGATKN---GV-LAAEAIVLFNTSLATEMSYRRKRAGHLSSK--MRFLSAQ 252 (356)
T ss_dssp TTHHHHHHHHTCC--TTTTTGGGTCCEEEECCGGG---TC-SSCEEEEESSGGGHHHHHHHHHHTTCCCSS--THHHHHH
T ss_pred hhhHhHhccCCCC--HHHhhhhhcCCEEEEecccC---CC-cCccEEEEECHHHHhhHHHHhhccCchhhh--HHHHHHH
Confidence 997431 11211 11111 134554 56787 33 555 7777888776654221 11111111 1223333
Q ss_pred HHHHHhhh---cHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCchhHHHHHHHHHHCCeEeccCC
Q 017259 241 SLDVIRDE---KLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTH 317 (374)
Q Consensus 241 al~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~ 317 (374)
+++.+.++ ++.++.+++.+++.+.|++ ++++....+..+.++|+.++ .++.+.|.++||.++++.
T Consensus 253 ~~~~l~~~~~~~~~~~~~~~~~~l~~~L~~----~~g~~~~~~~~~~~~~~~~~--------~~~~~~l~~~gi~v~~g~ 320 (356)
T 1v72_A 253 IDAYLTDDLWLRNARKANAAAQRLAQGLEG----LGGVEVLGGTEANILFCRLD--------SAMIDALLKAGFGFYHDR 320 (356)
T ss_dssp HHHHTSTTHHHHHHHHHHHHHHHHHHHHTT----CTTEEEESCCCSSEEEEEEC--------HHHHHHHHHTTCBCBCSS
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHhh----CCCcEEccCCCccEEEEEcC--------HHHHHHHHhcCeEEeccc
Confidence 44544432 2344455555555555543 22222212334566676553 378999999999998653
Q ss_pred --CCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 017259 318 --DTIVRLTPPLSISSNELQEGSKALHDVLE 346 (374)
Q Consensus 318 --~~~lRi~~~~~~~~e~i~~~~~~l~~~~~ 346 (374)
.+++|++++...+++++++++++|+++++
T Consensus 321 ~~~~~iRi~~~~~~~~~~i~~~~~~l~~~l~ 351 (356)
T 1v72_A 321 WGPNVVRFVTSFATTAEDVDHLLNQVRLAAD 351 (356)
T ss_dssp SSTTEEEEECCTTCCHHHHHHHHHHHHHTC-
T ss_pred cCCCeEEEEecCCCCHHHHHHHHHHHHHHHH
Confidence 68999999989999999999999998876
No 159
>7aat_A Aspartate aminotransferase; transferase(aminotransferase); HET: PLP; 1.90A {Gallus gallus} SCOP: c.67.1.1 PDB: 1ivr_A* 1map_A* 1maq_A* 1oxo_A* 1oxp_A* 1ama_A* 1tas_A* 1tat_A* 1tar_A* 8aat_A* 9aat_A* 1aka_A* 1akb_A* 1akc_A* 3pd6_A* 3hlm_A* 3pdb_A*
Probab=99.93 E-value=3.9e-25 Score=208.19 Aligned_cols=296 Identities=16% Similarity=0.087 Sum_probs=184.9
Q ss_pred cHHHHHHHHhccc----C----CCeEEe--cCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCccccccccc
Q 017259 22 KFPVFAERLTSMF----G----YDMVLP--MNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMS 91 (374)
Q Consensus 22 ~~~~l~~~l~~~~----~----~~~~~~--~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~ 91 (374)
...++.+.+++++ | .+++++ |+||++|++.+++++... .++| |+|++.+|+|+++.......+
T Consensus 72 g~~~lr~~ia~~~~~~~~~~~~~~~i~~v~t~G~~~al~~~~~~l~~~--~~~g-----d~Vlv~~p~~~~~~~~~~~~g 144 (401)
T 7aat_A 72 GLADFTRASAELALGENSEAFKSGRYVTVQGISGTGSLRVGANFLQRF--FKFS-----RDVYLPKPSWGNHTPIFRDAG 144 (401)
T ss_dssp CCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHHHHHHH--CTTC-----CEEEEEESCCTTHHHHHHHTT
T ss_pred CCHHHHHHHHHHhcCCCccccccCceEEEecCcchHHHHHHHHHHHHh--ccCC-----CEEEEcCCCchhHHHHHHHcC
Confidence 3445555555443 3 678877 999999999999887532 3667 999999999988765554443
Q ss_pred CCccccccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEeccc
Q 017259 92 CDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQ 171 (374)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~ 171 (374)
..........+ .+... |++.+++.+++.+++++++++++++|++|.+. +.+.+++|.++|++||+++|+||+|
T Consensus 145 ~~~~~~~~~~~--~~~~~----d~~~l~~~l~~~~~~~~~v~i~~p~NPtG~~~-~~~~l~~i~~~~~~~~~~li~Deay 217 (401)
T 7aat_A 145 LQLQAYRYYDP--KTCSL----DFTGAMEDISKIPEKSIILLHACAHNPTGVDP-RQEQWKELASVVKKRNLLAYFDMAY 217 (401)
T ss_dssp CEEEEEECEET--TTTEE----CHHHHHHHHTTSCTTCEEEEESSSCTTTCCCC-CHHHHHHHHHHHHHTTCEEEEEESC
T ss_pred CeeEeeeeecc--ccCcc----CHHHHHHHHHhCCCCcEEEEeCCCCCCCCCCC-CHHHHHHHHHHHHhCCcEEEEcccc
Confidence 22111100000 00111 78888888876556789999999999999876 8999999999999999999999999
Q ss_pred cCCccccc---Cccccc-CCCCCc---EEEeccccc-CCccchhhhee---CHH----HHhhcCCCCCCCCCCCCHHHHH
Q 017259 172 SGLARSGR---MLASDW-EEVRPD---MVILGKALG-GGVIPVSAVLA---DKE----VMLCIQPGEHGSTFGGNPLASA 236 (374)
Q Consensus 172 ~~~~~~g~---~~~~~~-~~~~~d---~~s~sK~~~-~G~~~~G~~~~---~~~----~~~~~~~~~~~~~~~~~~~~~~ 236 (374)
.++.+.+. ...... .+..++ +.|+||.++ +|+ |+||++. +++ +...+.......+.+.+.+++.
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~~~~G~-RiG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (401)
T 7aat_A 218 QGFASGDINRDAWALRHFIEQGIDVVLSQSYAKNMGLYGE-RAGAFTVICRDAEEAKRVESQLKILIRPMYSNPPMNGAR 296 (401)
T ss_dssp TTTTTSCHHHHTHHHHHHHHTTCCCEEEEECTTTSCCGGG-CEEEEEEECSSHHHHHHHHHHHHHHHHHHHSSCCHHHHH
T ss_pred ccccCCCccccHHHHHHHHhcCCcEEEEecCCcccccccC-ceEEEEEEeCCHHHHHHHHHHHHHHHHhccCCCChHHHH
Confidence 98765432 111111 112223 359999998 799 9999775 554 3333332212223344556665
Q ss_pred HHHHHHHHH------h--hhcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEE-eeeEEEEeccCCCchhHHHHHHHHH
Q 017259 237 VAIASLDVI------R--DEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGR-GLFNAVEFDKTALPVSAYDICLKMK 307 (374)
Q Consensus 237 aa~~al~~~------~--~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~l~ 307 (374)
++..+++.. . -++..++++++++++.+.|++.. .++......+. +.+.|..+ +.+.+...+.
T Consensus 297 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~--~~~~~~~~~~~~~~~~~~~~-------~~~~~~~ll~ 367 (401)
T 7aat_A 297 IASLILNTPELRKEWLVEVKGMADRIISMRTQLVSNLKKEG--SSHNWQHITDQIGMFCFTGL-------KPEQVERLTK 367 (401)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--CCSCCHHHHHCCSSEEECCC-------CHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CCCCCceecCCcceEEecCC-------CHHHHHHHHH
Confidence 555444311 1 12345566666677776666542 11111112223 34444322 2344433345
Q ss_pred HCCeEeccCCCCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 017259 308 ERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVLE 346 (374)
Q Consensus 308 ~~Gi~v~~~~~~~lRi~~~~~~~~e~i~~~~~~l~~~~~ 346 (374)
++||.+.+. +||+++.. +++++++++++|+++++
T Consensus 368 ~~gi~v~~~----~Ris~~~~-~~~~i~~~~~~l~~~~~ 401 (401)
T 7aat_A 368 EFSIYMTKD----GRISVAGV-ASSNVGYLAHAIHQVTK 401 (401)
T ss_dssp HHCEECCTT----CEEEGGGC-CTTTHHHHHHHHHHHHC
T ss_pred hCCEeccCC----CeEEeccC-ChhhHHHHHHHHHHHhC
Confidence 679999865 59997644 45569999999998763
No 160
>1pff_A Methionine gamma-lyase; homocysteine; 2.50A {Trichomonas vaginalis} SCOP: c.67.1.3
Probab=99.93 E-value=1.3e-24 Score=199.28 Aligned_cols=281 Identities=12% Similarity=0.052 Sum_probs=196.0
Q ss_pred HHHHHHhcccCCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccCCccccccCCCCC
Q 017259 25 VFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLL 104 (374)
Q Consensus 25 ~l~~~l~~~~~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~ 104 (374)
++++++++++|.++.++++||++|++.+++.+ ..+| |+|++..++|++.......+....+
T Consensus 2 ~l~~~la~~~g~~~~i~~~sG~~a~~~~~~~~-----~~~g-----~~v~~~~~~~~~~~~~~~~~~~~~g--------- 62 (331)
T 1pff_A 2 ALEGKIAKLEHAEACAATASGMGAIAASVWTF-----LKAG-----DHLISDDCLYGCTHALFEHQLRKFG--------- 62 (331)
T ss_dssp HHHHHHHHHHTCSEEEEESSHHHHHHHHHHHH-----CCTT-----CEEEEESCCCHHHHHHHHTHHHHTT---------
T ss_pred hHHHHHHHHhCCCeEEEeCChHHHHHHHHHHh-----cCCC-----CEEEEcCCCcchHHHHHHHHHHhcC---------
Confidence 57889999888888888888999999999987 4567 9999999999876444322100000
Q ss_pred CCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHh-cCCEEEEeccccCCcccccCccc
Q 017259 105 PGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSK-YNILMIADEIQSGLARSGRMLAS 183 (374)
Q Consensus 105 ~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~-~~i~li~Dea~~~~~~~g~~~~~ 183 (374)
..+..++..|+++++++++ ++++++++++++|++|.+.+ +++|.++|++ ||+++|+||+|+.+.. ... .
T Consensus 63 ~~~~~~~~~d~~~l~~~i~---~~~~~v~~~~~~nptG~~~~----~~~i~~~~~~~~~~~li~D~a~~~~~~-~~~--~ 132 (331)
T 1pff_A 63 VEVDFIDMAVPGNIEKHLK---PNTRIVYFETPANPTLKVID----IEDAVKQARKQKDILVIVDNTFASPIL-TNP--L 132 (331)
T ss_dssp CEEEEECTTSTTHHHHTCC---TTEEEEEEESSCTTTCCCCC----HHHHHHHHTTSSSCEEEEECTTTHHHH-CCG--G
T ss_pred CEEEEeCCCCHHHHHHhhc---CCCeEEEEECCCCCcCcccC----HHHHHHHHhhhcCCEEEEECCCccccc-CCh--h
Confidence 2234445568888988886 57999999999999999998 9999999999 9999999999983211 111 1
Q ss_pred ccCCCCCcEEEecccccC-Cccc-hhhheeCH-HHHhhcCCCCCC-CCCCCCHHHHHHHHHHHHHHhhhcHHHHHHHHHH
Q 017259 184 DWEEVRPDMVILGKALGG-GVIP-VSAVLADK-EVMLCIQPGEHG-STFGGNPLASAVAIASLDVIRDEKLAERSAHLGE 259 (374)
Q Consensus 184 ~~~~~~~d~~s~sK~~~~-G~~~-~G~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~aa~~al~~~~~~~~~~~~~~~~~ 259 (374)
.++.+..+.|++|.+++ |. | +|++++++ ++.+.+...... .+...+++.+.++.++++.+.. ..+....+.+
T Consensus 133 -~~~~d~~~~s~~K~~~~~~~-r~~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~ 208 (331)
T 1pff_A 133 -DLGVDIVVHSATKYINGHTD-VVAGLVCSRADIIAKVKSQGIKDITGAIISPHDAWLITRGTLTLDM--RVKRAAENAQ 208 (331)
T ss_dssp -GGTCSEEEEETTTTTSSSSS-CCCEEEEECHHHHHHHHHTCCCCCCCCCCCHHHHHHHHHHHHHHHH--HHHHHHHHHH
T ss_pred -hcCCcEEEEECccccCCCCC-ceEEEEEeCcHHHHHHHHHHHHhhcCCCCCHHHHHHHHcCcchHHH--HHHHHHHHHH
Confidence 12322234478899985 66 7 78999998 888888765555 4567788888777777765422 2344445555
Q ss_pred HHHHHHHHHHH----------hCCCce---eeEEEEeeeEEEEeccCCCchhHHHHHHHHHHCCeEeccC----------
Q 017259 260 ELRQHLFKIQQ----------QFPNYV---KEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPT---------- 316 (374)
Q Consensus 260 ~~~~~l~~~~~----------~~~~~~---~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~---------- 316 (374)
.+.+.+++... .+|++. ...++.+.++.+.++ +..++.+.|.++||.++..
T Consensus 209 ~~~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~l~~~gI~~~~~s~g~~~sl~~ 282 (331)
T 1pff_A 209 KVAEFLHEHKAVKKVYYPGLPDHPGHEIAKKQMKMFGSMIAFDVD------GLEKAKKVLDNCHVVSLAVSLGGPESLIQ 282 (331)
T ss_dssp HHHHHHHHCTTCCCEECTTSTTSTTHHHHHHHCSSCCSEEEEECS------SHHHHHHHHHTCSSSEECSSCCSSSCEEE
T ss_pred HHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEEC------CHHHHHHHHHhCCCceeccCCCCcceeee
Confidence 55555543210 000000 001235677777765 3567888888999966432
Q ss_pred --------------------CCCEEEEecCCCCCHHHHHHHHHHHHHH
Q 017259 317 --------------------HDTIVRLTPPLSISSNELQEGSKALHDV 344 (374)
Q Consensus 317 --------------------~~~~lRi~~~~~~~~e~i~~~~~~l~~~ 344 (374)
..+++|++++...++++++.++++|+++
T Consensus 283 ~~~~~~~~~~~~~~~~~~g~~~~~iRis~~~~~t~~~i~~l~~~l~~~ 330 (331)
T 1pff_A 283 HPASMTHAGVPKEEREAAGLTDNLIRLSVGCENVQDIIDDLKQALDLV 330 (331)
T ss_dssp CHHHHTSTTSCHHHHHHTTCCTTEEEEECCSSCHHHHHHHHHHHHHTC
T ss_pred cchhhcccccCHHHHHhcCCCCCeEEEEEecCCHHHHHHHHHHHHHHh
Confidence 1479999999999999999999988754
No 161
>2oga_A Transaminase; PLP-dependent enzyme, desosamine, deoxysugars, antibiotics, hydrolase; HET: PGU; 2.05A {Streptomyces venezuelae} PDB: 2oge_A*
Probab=99.93 E-value=6.7e-25 Score=206.52 Aligned_cols=300 Identities=15% Similarity=0.153 Sum_probs=201.0
Q ss_pred hHHHHHHHhccccCcCCCCCcHHHHHHHHhcccCCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCC
Q 017259 2 KALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFH 81 (374)
Q Consensus 2 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yh 81 (374)
+|+.+++.... +...+...++++.++++++.+++++++||++|++.+++.+. ..+| |+|++..++|+
T Consensus 48 ~a~~~~~~~~~----y~~~~~~~~l~~~la~~~~~~~~v~~~~Gt~a~~~~l~~~~----~~~g-----d~vl~~~~~~~ 114 (399)
T 2oga_A 48 AAIARVLDSGR----YLLGPELEGFEAEFAAYCETDHAVGVNSGMDALQLALRGLG----IGPG-----DEVIVPSHTYI 114 (399)
T ss_dssp HHHHHHHHHTC----CSSSHHHHHHHHHHHHHTTSSEEEEESCHHHHHHHHHHHTT----CCTT-----CEEEEESSSCT
T ss_pred HHHHHHHhcCC----CCCchhHHHHHHHHHHHHCCCeEEEecCHHHHHHHHHHHhC----CCCc-----CEEEECCCccH
Confidence 44555554432 22356788899999999998899999999999999998873 3556 99999999998
Q ss_pred CcccccccccCCccccccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhc
Q 017259 82 GRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKY 161 (374)
Q Consensus 82 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~ 161 (374)
+....+...+...... +...+. -..|+++++++++ +++++++++ |++|.+.+ +++|.++|+++
T Consensus 115 ~~~~~~~~~g~~~~~~----~~~~~~---~~~d~~~l~~~i~---~~~~~v~~~---n~tG~~~~----l~~i~~l~~~~ 177 (399)
T 2oga_A 115 ASWLAVSATGATPVPV----EPHEDH---PTLDPLLVEKAIT---PRTRALLPV---HLYGHPAD----MDALRELADRH 177 (399)
T ss_dssp HHHHHHHHTTCEEEEE----CBCSSS---SSBCHHHHHHHCC---TTEEEECCB---CGGGCCCC----HHHHHHHHHHH
T ss_pred HHHHHHHHCCCEEEEE----ecCCCC---CCcCHHHHHHhcC---CCCeEEEEe---CCcCCccC----HHHHHHHHHHc
Confidence 8654433322211111 110000 0127899998887 468888753 45788877 99999999999
Q ss_pred CCEEEEeccccCC-cccccCcccccCCCCCcEEEe----cccccC-CccchhhheeC-HHHHhhcCCCC-----------
Q 017259 162 NILMIADEIQSGL-ARSGRMLASDWEEVRPDMVIL----GKALGG-GVIPVSAVLAD-KEVMLCIQPGE----------- 223 (374)
Q Consensus 162 ~i~li~Dea~~~~-~~~g~~~~~~~~~~~~d~~s~----sK~~~~-G~~~~G~~~~~-~~~~~~~~~~~----------- 223 (374)
|++||+||+|+.+ ...+.. .+..+|++++ ||.+++ | ++|+++.+ +++.+.+....
T Consensus 178 ~~~li~Dea~~~g~~~~~~~-----~~~~~di~~~S~~~sK~~~~~G--~~g~~~~~~~~~~~~l~~~~~~g~~~~~~~~ 250 (399)
T 2oga_A 178 GLHIVEDAAQAHGARYRGRR-----IGAGSSVAAFSFYPGKNLGCFG--DGGAVVTGDPELAERLRMLRNYGSRQKYSHE 250 (399)
T ss_dssp TCEECEECTTCTTCEETTEE-----TTCTTCEEEEECCTTSSSCCSS--CCEEEEESCHHHHHHHHHHHBTTCSSTTCCC
T ss_pred CCEEEEECcccccCccCCee-----cccccCEEEEeCCCCccCCcCC--ceEEEEeCCHHHHHHHHHHHhcCcccccccc
Confidence 9999999999843 122221 2223577655 599986 5 67888875 77766553211
Q ss_pred -CCCCCCCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHhCCCceee-EE--EEeeeEEEEeccCCCchhH
Q 017259 224 -HGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKE-VR--GRGLFNAVEFDKTALPVSA 299 (374)
Q Consensus 224 -~~~~~~~~~~~~~aa~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~--~~g~~~~~~~~~~~~~~~~ 299 (374)
.+.++..+++.++++.++++.+. ++.++.+++.+++.+.|+++ |++... .+ ..+.++.+.+... +.
T Consensus 251 ~~g~~~~~~~~~~a~~~~~l~~~~--~~~~~~~~~~~~l~~~L~~~----~g~~~~~~~~~~~~~~~~~~~~~~----~~ 320 (399)
T 2oga_A 251 TKGTNSRLDEMQAAVLRIRLAHLD--SWNGRRSALAAEYLSGLAGL----PGIGLPVTAPDTDPVWHLFTVRTE----RR 320 (399)
T ss_dssp SCCCBCCCCHHHHHHHHHHHHTHH--HHHHHHHHHHHHHHHHTTTC----TTCBCCCCCTTEECCCSSEEEECS----SH
T ss_pred ccccCCCcCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhccC----CCccccCCCCCCcceeEEEEEECC----CH
Confidence 12334668888888888877553 34555666666666655543 222111 11 2222222434322 57
Q ss_pred HHHHHHHHHCCeEeccCCC---------------------------CEEEEecCCCCCHHHHHHHHHHHHHHHhccC
Q 017259 300 YDICLKMKERGILAKPTHD---------------------------TIVRLTPPLSISSNELQEGSKALHDVLELDL 349 (374)
Q Consensus 300 ~~~~~~l~~~Gi~v~~~~~---------------------------~~lRi~~~~~~~~e~i~~~~~~l~~~~~~~~ 349 (374)
.++.+.|.++||.+++... +++||+++..++++|+++++++|+++++ ++
T Consensus 321 ~~l~~~L~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~-~l 396 (399)
T 2oga_A 321 DELRSHLDARGIDTLTHYPVPVHLSPAYAGEAPPEGSLPRAESFARQVLSLPIGPHLERPQALRVIDAVREWAE-RV 396 (399)
T ss_dssp HHHHHHHHHTTBCCBCSCSSCGGGSHHHHTTSCCTTSCHHHHHHHHHEEEECCSTTCCHHHHHHHHHHHHHHHH-SC
T ss_pred HHHHHHHHHCCCceecCCCCccccchhhcccCCCCCCChhHHHHHhCEEEccCCCCCCHHHHHHHHHHHHHHHH-Hh
Confidence 8899999999999987431 5799999999999999999999999998 65
No 162
>3dr4_A Putative perosamine synthetase; deoxysugar, pyridoxal phosphate, aspartate aminotransferase, O-antigen; HET: G4M; 1.60A {Caulobacter crescentus} PDB: 3dr7_A* 3bn1_A*
Probab=99.93 E-value=3.2e-25 Score=208.11 Aligned_cols=288 Identities=13% Similarity=0.152 Sum_probs=193.4
Q ss_pred CCCcHHHHHHHHhcccCCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccCCccccc
Q 017259 19 YNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIR 98 (374)
Q Consensus 19 ~~~~~~~l~~~l~~~~~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~ 98 (374)
..+...++++.++++++.+++++++||++|++.+++.+. ..+| |+|++..++|++....+...+.......
T Consensus 54 ~~~~~~~l~~~la~~~~~~~~i~~~~gt~al~~~l~~~~----~~~g-----d~vl~~~~~~~~~~~~~~~~g~~~~~~~ 124 (391)
T 3dr4_A 54 VGRFIVEFEKAFADYCGVKHAIACNNGTTALHLALVAMG----IGPG-----DEVIVPSLTYIASANSVTYCGATPVLVD 124 (391)
T ss_dssp CSHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHT----CCTT-----CEEEEESSSCTHHHHHHHHTTCEEEEEC
T ss_pred CChHHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHcC----CCCc-----CEEEECCCchHHHHHHHHHCCCEEEEEe
Confidence 467888999999999999999999999999999999883 4566 9999999999887655544332211110
Q ss_pred cCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEeccccC-Cccc
Q 017259 99 GFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSG-LARS 177 (374)
Q Consensus 99 ~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~~-~~~~ 177 (374)
..+ .+.. -|+++++++++ +++++++++ |++|...+ +++|.++|++||++||+|++|+. ....
T Consensus 125 -~~~--~~~~----~d~~~l~~~~~---~~~~~v~~~---n~tG~~~~----~~~i~~l~~~~~~~li~D~a~~~g~~~~ 187 (391)
T 3dr4_A 125 -NDP--RTFN----LDAAKLEALIT---PRTKAIMPV---HLYGQICD----MDPILEVARRHNLLVIEDAAEAVGATYR 187 (391)
T ss_dssp -BCT--TTCS----BCGGGSGGGCC---TTEEEECCB---CGGGCCCC----HHHHHHHHHHTTCEEEEECTTCTTCEET
T ss_pred -cCc--cccC----cCHHHHHHhcC---CCceEEEEE---CCCCChhh----HHHHHHHHHHcCCEEEEECcccccceEC
Confidence 000 0000 16788887776 578888753 46787777 99999999999999999999983 3222
Q ss_pred ccCcccccCCCCCcEEEec----ccccCCccchhhheeC-HHHHhhcCCC--------------CCCCCCCCCHHHHHHH
Q 017259 178 GRMLASDWEEVRPDMVILG----KALGGGVIPVSAVLAD-KEVMLCIQPG--------------EHGSTFGGNPLASAVA 238 (374)
Q Consensus 178 g~~~~~~~~~~~~d~~s~s----K~~~~G~~~~G~~~~~-~~~~~~~~~~--------------~~~~~~~~~~~~~~aa 238 (374)
+. ..+..+|+.++| |++++| ++|+++.+ +.+.+.+... ..+.++..+.+.++++
T Consensus 188 ~~-----~~~~~~di~~~S~s~~K~l~~g--~gg~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~l~aa~~ 260 (391)
T 3dr4_A 188 GK-----KSGSLGDCATFSFFGNAIITTG--EGGMITTNDDDLAAKMRLLRGQGMDPNRRYWFPIVGFNYRMTNIQAAIG 260 (391)
T ss_dssp TE-----ETTSSSSEEEEECBTTSSSCCB--SCEEEEESCHHHHHHHHHHHBTTCCTTSTTCCSSCCCBCBCCHHHHHHH
T ss_pred Ce-----eecccCCEEEEECCCCCcCCcC--CeEEEEECCHHHHHHHHHHHhcCCCCCCcccccccccccCCCHHHHHHH
Confidence 21 112224565554 888764 57777665 4454444211 1122345566666555
Q ss_pred HHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHhCCCceee-----EEEEeeeEEEEeccCCCchhHHHHHHHHHHCCeEe
Q 017259 239 IASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKE-----VRGRGLFNAVEFDKTALPVSAYDICLKMKERGILA 313 (374)
Q Consensus 239 ~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-----~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v 313 (374)
...++.+ +++.++.+++.+++++.|+++. + ..... ....+.++++.++.. .+.+..++.+.|.++||.+
T Consensus 261 ~~~~~~~--~~~~~~~~~~~~~l~~~L~~~g--~-~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~~l~~~L~~~GI~v 334 (391)
T 3dr4_A 261 LAQLERV--DEHLAARERVVGWYEQKLARLG--N-RVTKPHVALTGRHVFWMYTVRLGEG-LSTTRDQVIKDLDALGIES 334 (391)
T ss_dssp HHHHHTH--HHHHHHHHHHHHHHHHHHGGGT--T-SEECCCCCTTSCCCCSSEEEEECSS-CSSCHHHHHHHHHHTTCCC
T ss_pred HHHHHHH--HHHHHHHHHHHHHHHHHhhcCC--c-cccCcCCCCCCcceeEEEEEEECCc-cchhHHHHHHHHHHCCCce
Confidence 5444433 3467777778888888777662 1 11111 122334556666541 0125889999999999999
Q ss_pred ccCC------------------------CCEEEEecCCCCCHHHHHHHHHHHHHHH
Q 017259 314 KPTH------------------------DTIVRLTPPLSISSNELQEGSKALHDVL 345 (374)
Q Consensus 314 ~~~~------------------------~~~lRi~~~~~~~~e~i~~~~~~l~~~~ 345 (374)
++.. ...+|++++..+|++|+++++++|++++
T Consensus 335 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~lrl~~~~~~t~edi~~~~~~l~~~l 390 (391)
T 3dr4_A 335 RPVFHPMHIMPPYAHLATDDLKIAEACGVDGLNLPTHAGLTEADIDRVIAALDQVL 390 (391)
T ss_dssp EECCCCGGGSGGGGGGCCTTCHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHHTTC
T ss_pred eecCCccccChhhhhcCcCCChHHHHHHhCeEEccCCCCCCHHHHHHHHHHHHHHh
Confidence 8653 3579999999999999999999998654
No 163
>2ez2_A Beta-tyrosinase, tyrosine phenol-lyase; PLP-dependent enzyme, pyridoxal-5'-phosphate, domain lyase; 1.85A {Citrobacter freundii} PDB: 2ez1_A 2vlf_A* 2vlh_A* 2yct_A* 1tpl_A 2tpl_A* 2ycn_A* 2yhk_A* 2ycp_A* 1c7g_A*
Probab=99.93 E-value=1.8e-24 Score=207.09 Aligned_cols=313 Identities=15% Similarity=0.120 Sum_probs=195.5
Q ss_pred CCCcHHHHHHHHhcccCCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccCCccccc
Q 017259 19 YNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIR 98 (374)
Q Consensus 19 ~~~~~~~l~~~l~~~~~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~ 98 (374)
..+...++++.|+++++.+++++++||++|++.+++++ .++| | ++..++||+.+.......+......
T Consensus 73 ~~~~~~~l~~~la~~~~~~~~~~~~~gt~a~~~al~~l-----~~~g-----d--i~~~~~~~~~~~~~~~~~G~~~~~v 140 (456)
T 2ez2_A 73 GSENFYHLERTVQELFGFKHIVPTHQGRGAENLLSQLA-----IKPG-----Q--YVAGNMYFTTTRYHQEKNGAVFVDI 140 (456)
T ss_dssp SCHHHHHHHHHHHHHHCCSEEEEESSHHHHHHHHHHHH-----CCTT-----C--EEEESSCCHHHHHHHHHTTCEEEEC
T ss_pred cChhHHHHHHHHHHHhCCCcEEEeCCcHHHHHHHHHHh-----CCCC-----C--EeccccccchhHHHHHHcCCEEEEe
Confidence 45668889999999999999999999999999999888 4566 7 7888998776444433333211111
Q ss_pred cCCCCCCCceecc--CC-CHHHHHHHHHhcC-CcEEEEEEccccC-CCCcccCChhHHHHHHHHHHhcCCEEEEeccccC
Q 017259 99 GFGPLLPGHLKVD--FG-DITALEKIFKESG-DQIAGFLFEPIQG-EAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSG 173 (374)
Q Consensus 99 ~~~~~~~~~~~~~--~~-d~~~le~~l~~~~-~~~~~vi~~~~~~-~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~~ 173 (374)
...+........+ +. |+++|++++++.. .+++++++++++| ++|.+. +.+.+++|.++|++||++||+||+|+.
T Consensus 141 ~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~t~~~~~~v~l~~p~n~ptG~~~-~~~~l~~i~~la~~~~i~li~De~~~~ 219 (456)
T 2ez2_A 141 VRDEAHDAGLNIAFKGDIDLKKLQKLIDEKGAENIAYICLAVTVNLAGGQPV-SMANMRAVRELTEAHGIKVFYDATRCV 219 (456)
T ss_dssp BCGGGGCTTCCCSCTTCBCHHHHHHHHHHHCGGGEEEEEEESSBTTTTSBCC-CHHHHHHHHHHHHHTTCCEEEECTTHH
T ss_pred cccccccccccccccCCCCHHHHHHHHHhccccceeEEEEeccCCCCCCccC-CHHHHHHHHHHHHHcCCeEEEEccccc
Confidence 1100000000011 12 8999999998542 3468899987766 778654 899999999999999999999999984
Q ss_pred ----------CcccccCcc-c-ccCCCCCcEEEec-ccccCCccchhhhee-CHHHHhhcCCCC---CC-CCC-CCCHHH
Q 017259 174 ----------LARSGRMLA-S-DWEEVRPDMVILG-KALGGGVIPVSAVLA-DKEVMLCIQPGE---HG-STF-GGNPLA 234 (374)
Q Consensus 174 ----------~~~~g~~~~-~-~~~~~~~d~~s~s-K~~~~G~~~~G~~~~-~~~~~~~~~~~~---~~-~~~-~~~~~~ 234 (374)
+.+.|..+. . ...+..+|++++| |.+++.- ++|++++ ++++.+.+.... .+ .++ +.+...
T Consensus 220 g~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~~S~kk~~~~~-~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (456)
T 2ez2_A 220 ENAYFIKEQEQGFENKSIAEIVHEMFSYADGCTMSGKKDCLVN-IGGFLCMNDDEMFSSAKELVVVYEGMPSYGGLAGRD 298 (456)
T ss_dssp HHHHHHHHHSTTCTTSCHHHHHHHHHTTCSEEEEETTTTTCCS-SCEEEEESCHHHHHHHHHHHHHHTCCTTTTTCCHHH
T ss_pred cccccccccccccCCcchhhhhhhhcccCCEEEEeCcccCCCC-ceeEEEECCHHHHHHHHHHHhhccCcccccCcchhH
Confidence 334443211 0 0112235777654 5454322 4788887 677766554211 11 112 223333
Q ss_pred HHH-HHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEecc---CCC-chh-HHHHHHHH-H
Q 017259 235 SAV-AIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDK---TAL-PVS-AYDICLKM-K 307 (374)
Q Consensus 235 ~~a-a~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~-~~~-~~~~~~~l-~ 307 (374)
+++ +.+.++.+. +++.++.+++.+++.+.|++. .++ +.. +..+.++++.+.. ... ... ...+++.| .
T Consensus 299 ~~a~a~~~~~~~~-~~~~~~~~~~~~~l~~~L~~~--g~~-~~~--p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~ 372 (456)
T 2ez2_A 299 MEAMAIGLREAMQ-YEYIEHRVKQVRYLGDKLKAA--GVP-IVE--PVGGHAVFLDARRFCEHLTQDEFPAQSLAASIYV 372 (456)
T ss_dssp HHHHHHHHHHHTC-HHHHHHHHHHHHHHHHHHHHT--TCC-BCS--SCCSSEEEEEHHHHTTTSCGGGCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhH-HHHHHHHHHHHHHHHHHHhcC--CCc-ccc--CCCceEEEEEhHHhcCCCChhhccHHHHHHHHHH
Confidence 333 444444332 356677777777777777663 221 221 2246677776531 110 011 33447777 5
Q ss_pred HCCeEecc-C----------------CCCEEEEecCCC-CCHHHHHHHHHHHHHHHhccCCcC
Q 017259 308 ERGILAKP-T----------------HDTIVRLTPPLS-ISSNELQEGSKALHDVLELDLPKM 352 (374)
Q Consensus 308 ~~Gi~v~~-~----------------~~~~lRi~~~~~-~~~e~i~~~~~~l~~~~~~~~~~~ 352 (374)
++||.+.+ + ..+++||+++.. .+++++++++++|+++++ +....
T Consensus 373 ~~gv~~~~~g~~~~~~~~~~g~~~~~~~~~iRis~~~~~~t~e~i~~~~~~l~~~l~-~~~~~ 434 (456)
T 2ez2_A 373 ETGVRSMERGIISAGRNNVTGEHHRPKLETVRLTIPRRVYTYAHMDVVADGIIKLYQ-HKEDI 434 (456)
T ss_dssp HHSEECEEESHHHHCBCTTTCSBCCCSCCEEEEECCTTTCCHHHHHHHHHHHHHHHH-TGGGC
T ss_pred hcCeeeecccccccccCccccccccCCCCeEEEEeCCCCCCHHHHHHHHHHHHHHHh-hhhhc
Confidence 77987643 1 137899998876 899999999999999998 65443
No 164
>1ax4_A Tryptophanase; tryptophan biosynthesis, tryptophan indole-lyase, pyridoxal 5'-phosphate, monovalent cation binding site; HET: LLP; 2.10A {Proteus vulgaris} SCOP: c.67.1.2
Probab=99.93 E-value=1.9e-24 Score=207.65 Aligned_cols=314 Identities=16% Similarity=0.146 Sum_probs=194.0
Q ss_pred CCCcHHHHHHHHhcccCCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccE---EEEeccCCCCcccccccccCCcc
Q 017259 19 YNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAI---IVSCCGCFHGRTLAAISMSCDNE 95 (374)
Q Consensus 19 ~~~~~~~l~~~l~~~~~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~---vi~~~~~yhg~~~~~~~~~~~~~ 95 (374)
..+...+++++++++++.+++++|+||++|++.++++++.+. ..+| |+ |++. ..+++.........+...
T Consensus 74 ~~~~~~~l~~~la~~~~~~~v~~t~ggt~A~~~al~~~~~~~-~~~G-----d~~~~viv~-~~~~~~~~~~~~~~g~~~ 146 (467)
T 1ax4_A 74 GSRNYYDLKDKAKELFNYDYIIPAHQGRGAENILFPVLLKYK-QKEG-----KAKNPVFIS-NFHFDTTAAHVELNGCKA 146 (467)
T ss_dssp SCHHHHHHHHHHHHHHCCCEEEEESSHHHHHHHHHHHHHHHH-HHTT-----CCSSCEEEE-SSCCHHHHHHHHHTTCEE
T ss_pred cCccHHHHHHHHHHHcCCCcEEEcCCcHHHHHHHHHHHHHhh-ccCC-----CccceEEEe-ccccchhhHHHhccCCce
Confidence 356678899999999999999999999999999999996421 1156 66 7776 322233332222222111
Q ss_pred ccccCC-CCCCCceeccC---CCHHHHHHHHHhcC-CcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEecc
Q 017259 96 AIRGFG-PLLPGHLKVDF---GDITALEKIFKESG-DQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEI 170 (374)
Q Consensus 96 ~~~~~~-~~~~~~~~~~~---~d~~~le~~l~~~~-~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea 170 (374)
...... ....+ ...++ .|+++|++++++++ ++++++++++++|++|+..++.+++++|.++|++||++||+||+
T Consensus 147 ~~~~~~~~~~~~-~~~~~~~~~d~~~le~~i~~~~~~~~~~vi~~~~~np~gG~~~~~~~l~~i~~la~~~gi~li~De~ 225 (467)
T 1ax4_A 147 INIVTEKAFDSE-TYDDWKGDFDIKKLKENIAQHGADNIVAIVSTVTCNSAGGQPVSMSNLKEVYEIAKQHGIFVVMDSA 225 (467)
T ss_dssp EECBCGGGGCTT-SCCTTTTCBCHHHHHHHHHHHCGGGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCCEEEECT
T ss_pred eccccccccccc-ccCCcccccCHHHHHHHHHhcCCCCeeEEEEeccccCCCccCCChhHHHHHHHHHHHcCCEEEEEch
Confidence 110000 00000 00112 28999999998643 47999999999999855666899999999999999999999998
Q ss_pred ccC---C-------cccccCcccccC---CCCCcEE--EecccccCCccchh-hheeC-H-HHHhhcCCC----CCCCCC
Q 017259 171 QSG---L-------ARSGRMLASDWE---EVRPDMV--ILGKALGGGVIPVS-AVLAD-K-EVMLCIQPG----EHGSTF 228 (374)
Q Consensus 171 ~~~---~-------~~~g~~~~~~~~---~~~~d~~--s~sK~~~~G~~~~G-~~~~~-~-~~~~~~~~~----~~~~~~ 228 (374)
+.. + ++.+.... +.. ...+|++ ++||.++ . ++| +++.+ + ++++.+... ....++
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~~~~s~sK~~g--~-~~Gg~~~~~d~~~l~~~~~~~~~~~~~~~~~ 301 (467)
T 1ax4_A 226 RFCENAYFIKARDPKYKNATIK-EVIFDMYKYADALTMSAKKDPL--L-NIGGLVAIRDNEEIFTLARQRCVPMEGFVTY 301 (467)
T ss_dssp THHHHHHHHHHHCGGGTTCCHH-HHHHHHGGGCSEEEEETTSTTC--C-SSCEEEEESSCHHHHHHHHHHHHHHTCSTTT
T ss_pred hhhhcchhccccccccCCCchh-hhhhhhccccceEEEeccccCC--C-CcceEEEeCCHHHHHHHHHhhcccccccccc
Confidence 652 0 12221100 000 0123554 6668765 4 544 45566 5 666654321 112233
Q ss_pred CC-CHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEE-------eccCCCchhHH
Q 017259 229 GG-NPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVE-------FDKTALPVSAY 300 (374)
Q Consensus 229 ~~-~~~~~~aa~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~-------~~~~~~~~~~~ 300 (374)
.. +...+.++..+++.+.+++..++..++.+++.+.|++. .++ +. .+..+.++|+. ++.. +.+..
T Consensus 302 ~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~L~~~--~~~-~~--~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 374 (467)
T 1ax4_A 302 GGLAGRDMAAMVQGLEEGTEEEYLHYRIGQVKYLGDRLREA--GIP-IQ--YPTGGHAVFVDCKKLVPQIPGD--QFPAQ 374 (467)
T ss_dssp TTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHT--TCC-BC--SSCCSSEEEEESTTTCTTSCGG--GCHHH
T ss_pred CCccchHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhC--CCC-cc--cCCCceEEEEehhhhccccccC--CCCHH
Confidence 33 33333333335554433335555567777788877762 221 22 22346677776 3211 12577
Q ss_pred HHHHHH-HHCCeEecc-C----------C------CCEEEEecC-CCCCHHHHHHHHHHHHHHHhccCCcC
Q 017259 301 DICLKM-KERGILAKP-T----------H------DTIVRLTPP-LSISSNELQEGSKALHDVLELDLPKM 352 (374)
Q Consensus 301 ~~~~~l-~~~Gi~v~~-~----------~------~~~lRi~~~-~~~~~e~i~~~~~~l~~~~~~~~~~~ 352 (374)
++++.| .++||.+.+ + + .+++||+++ ...+++++++++++|+++++ .+...
T Consensus 375 ~l~~~L~~~~gv~v~~~g~~~~~~~~~~g~~~~~~~~~iRls~~~~~~t~e~i~~~~~~l~~~~~-~~~~~ 444 (467)
T 1ax4_A 375 AVINALYLESGVRAVEIGSFLLGRDPATGEQKHADMEFMRLTIARRVYTNDHMDYIADALIGLKE-KFATL 444 (467)
T ss_dssp HHHHHHHHHHCEECEEESHHHHCBCTTTCSBCCCSCCEEEEECCTTSSCHHHHHHHHHHHHTTHH-HHTTC
T ss_pred HHHHHHHHhcCceeeecCccccccccccccccccccceEEEecccccCCHHHHHHHHHHHHHHHH-hhhcC
Confidence 899999 888999977 2 1 279999988 45899999999999999998 65443
No 165
>2cb1_A O-acetyl homoserine sulfhydrylase; PLP enzyme, lyase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: LLP; 2.0A {Thermus thermophilus}
Probab=99.93 E-value=2.6e-24 Score=203.31 Aligned_cols=286 Identities=14% Similarity=0.087 Sum_probs=195.1
Q ss_pred cccCcCCCCCcHHHHHHHHhcccCCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCccccccccc
Q 017259 12 TLSSRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMS 91 (374)
Q Consensus 12 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~ 91 (374)
.+.++.+.++..++++++++++++.+++++++||++|++.+++.+ .++| |+|++..++|++.........
T Consensus 47 ~~~y~~~~~~~~~~l~~~la~~~g~~~~~~~~~gt~a~~~al~~l-----~~~g-----d~vi~~~~~~~~~~~~~~~~~ 116 (412)
T 2cb1_A 47 GYVYARQKDPTAKALEERLKALEGALEAVVLASGQAATFAALLAL-----LRPG-----DEVVAAKGLFGQTIGLFGQVL 116 (412)
T ss_dssp SCSBTTTCCHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHTT-----CCTT-----CEEEEETTCCHHHHHHHHHTT
T ss_pred CcCcCCCCChHHHHHHHHHHHHhCCCcEEEECCHHHHHHHHHHHH-----hCCC-----CEEEEeCCCchhHHHHHHHHH
Confidence 333444456778999999999999999999999999999999877 4567 999999999876443322111
Q ss_pred CCccccccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEeccc
Q 017259 92 CDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQ 171 (374)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~ 171 (374)
.. ....+..++. |+++++++++ ++++++++++++|++|.+.+ +++|.++|++||+++|+||+|
T Consensus 117 ~~---------~g~~~~~~~~-~~~~l~~~i~---~~~~~v~~~~~~n~~G~~~~----l~~i~~l~~~~~~~li~D~~~ 179 (412)
T 2cb1_A 117 SL---------MGVTVRYVDP-EPEAVREALS---AKTRAVFVETVANPALLVPD----LEALATLAEEAGVALVVDNTF 179 (412)
T ss_dssp TT---------TTCEEEEECS-SHHHHHHHCC---TTEEEEEEESSCTTTCCCCC----HHHHHHHHHHHTCEEEEECGG
T ss_pred HH---------cCCEEEEECC-CHHHHHHHhc---cCCeEEEEeCCCCCCccccc----HHHHHHHHHHcCCEEEEECCC
Confidence 10 1122344444 4888988886 57999999999999999998 999999999999999999999
Q ss_pred cCCcccccCcccccCCCCCcEE--EecccccC-CccchhhheeCH----------------------------HHHhhcC
Q 017259 172 SGLARSGRMLASDWEEVRPDMV--ILGKALGG-GVIPVSAVLADK----------------------------EVMLCIQ 220 (374)
Q Consensus 172 ~~~~~~g~~~~~~~~~~~~d~~--s~sK~~~~-G~~~~G~~~~~~----------------------------~~~~~~~ 220 (374)
++++..... ....+|++ |++|.+++ |. ++|+++..+ ++.+.++
T Consensus 180 ~~~~~~~~~-----~~~~~di~~~S~~K~~~~~~~-~~G~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~r 253 (412)
T 2cb1_A 180 GAAGALCRP-----LAWGAHVVVESLTKWASGHGS-VLGGAVLSRETELWRNYPQFLQPDLKGQIPWEALRARCFPERVR 253 (412)
T ss_dssp GTTTTSCCG-----GGGTCSEEEEETTTTTTCSSC-CCCEEEEECCCSGGGGSGGGGCC-------HHHHGGGHHHHHHH
T ss_pred ccccccCCc-----cccCCeEEEECCcccccCCCC-cEEEEEEeccccccccccccccccccccchhhccchHHHHHHHH
Confidence 855211111 12345665 68899975 66 888876533 2223332
Q ss_pred CCC-CCCCCCCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHhCCCceee--E---------------EEE
Q 017259 221 PGE-HGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKE--V---------------RGR 282 (374)
Q Consensus 221 ~~~-~~~~~~~~~~~~~aa~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~--~---------------~~~ 282 (374)
... ....+..++...+.+...++.+ +...++.+++.+++.+.|.+. +++... . .+.
T Consensus 254 ~~~~~~~g~~~~~~~a~~~~~~l~~l--~~~~~~~~~~~~~l~~~L~~~----~~v~~v~~p~~~~~p~~~~~~~~~~~~ 327 (412)
T 2cb1_A 254 TLGLSLCGMALSPFNAYLLFQGLETV--ALRVARMSETARFLAERLQGH----PKVKALRYPGLPEDPAHRNARKYLASG 327 (412)
T ss_dssp HHHTTTTCCCCCHHHHHHHHHHGGGH--HHHHHHHHHHHHHHHHHHHTC----TTCSEEECTTSTTCTTHHHHHHHCSSS
T ss_pred HHHHHhcCCCCChHHhHHHHcCCchH--HHHHHHHHHHHHHHHHHHHcC----CCeeEEECCCCCCCccHHHHHHhCCCC
Confidence 211 1122344666666666555443 223455556677777766543 222100 0 235
Q ss_pred eeeEEEEeccCCCchhHHHHHHHHHHCCeEeccCC------------------------------CCEEEEecCCCCCHH
Q 017259 283 GLFNAVEFDKTALPVSAYDICLKMKERGILAKPTH------------------------------DTIVRLTPPLSISSN 332 (374)
Q Consensus 283 g~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~------------------------------~~~lRi~~~~~~~~e 332 (374)
+.++.|.+ . +...+.+.|.+.||.+ ... .+.+|++++..++++
T Consensus 328 ~~iv~~~~-~-----~~~~~~~~l~~~~i~~-~~s~g~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iR~s~g~~~~~~ 400 (412)
T 2cb1_A 328 GPILTLDL-G-----DLERASRFLGAIRLLK-AANLGDARTLLVHPWTTTHSRLKEEARLQAGVTPGLVRVSVGLEDPLD 400 (412)
T ss_dssp CSEEEEEC-S-----SHHHHHHHHHHCSSEE-CSCCSCSSCEEECTTTTTTTTSCHHHHHHTTCCTTEEEEECCSSCHHH
T ss_pred ceEEEEEe-C-----CHHHHHHHHHhCCeee-ecccCCCcceeecCcccccccCCHHHHHhcCCCCCeEEEEeccCCHHH
Confidence 67888877 3 3567788888889886 320 579999999999999
Q ss_pred HHHHHHHHHHH
Q 017259 333 ELQEGSKALHD 343 (374)
Q Consensus 333 ~i~~~~~~l~~ 343 (374)
+++.+.++|++
T Consensus 401 ~i~~l~~al~~ 411 (412)
T 2cb1_A 401 LLALFEEALEA 411 (412)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHhh
Confidence 99999988864
No 166
>3uwc_A Nucleotide-sugar aminotransferase; lipopolysaccharide biosynthesis; HET: MSE PMP; 1.80A {Coxiella burnetii}
Probab=99.93 E-value=8.2e-25 Score=203.94 Aligned_cols=284 Identities=14% Similarity=0.223 Sum_probs=192.3
Q ss_pred CCCCCcHHHHHHHHhcccCCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccCCccc
Q 017259 17 AFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEA 96 (374)
Q Consensus 17 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~ 96 (374)
+++.+...++++.++++++.+++++++||++|++.+++.+. .++| |+|++..++|++........+..
T Consensus 34 ~~~~~~~~~l~~~la~~~~~~~~~~~~~gt~a~~~~~~~~~----~~~g-----d~v~~~~~~~~~~~~~~~~~g~~--- 101 (374)
T 3uwc_A 34 FTLGAELEKFEKRFAALHNAPHAIGVGTGTDALAMSFKMLN----IGAG-----DEVITCANTFIASVGAIVQAGAT--- 101 (374)
T ss_dssp CSSCHHHHHHHHHHHHHTTCSEEEEESCHHHHHHHHHHHTT----CCTT-----CEEEEESSSCHHHHHHHHHTTCE---
T ss_pred cccChhHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHcC----CCCC-----CEEEECCCccHHHHHHHHHcCCE---
Confidence 34577889999999999999999999999999999998773 4556 99999999998876554433321
Q ss_pred cccCCCCCCCceeccCC-----CHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEeccc
Q 017259 97 IRGFGPLLPGHLKVDFG-----DITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQ 171 (374)
Q Consensus 97 ~~~~~~~~~~~~~~~~~-----d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~ 171 (374)
+..++.+ |+++++++++ +++++++ +.|++|.+.+ +++|.++|++||+++|+||+|
T Consensus 102 ----------~~~~~~~~~~~~d~~~l~~~~~---~~~~~v~---~~n~~G~~~~----~~~i~~~~~~~~~~li~D~~~ 161 (374)
T 3uwc_A 102 ----------PVLVDSENGYVIDPEKIEAAIT---DKTKAIM---PVHYTGNIAD----MPALAKIAKKHNLHIVEDACQ 161 (374)
T ss_dssp ----------EEEECBCTTSSBCGGGTGGGCC---TTEEEEC---CBCGGGCCCC----HHHHHHHHHHTTCEEEEECTT
T ss_pred ----------EEEEecCCCCCcCHHHHHHhCC---CCceEEE---EeCCcCCcCC----HHHHHHHHHHcCCEEEEeCCC
Confidence 2222222 7888888776 4788777 4567888887 999999999999999999999
Q ss_pred cCCcccccCcccccCCCCCcEEEec----ccccC-CccchhhheeC-HHHHhhcCCC------------CCCCCCCCCHH
Q 017259 172 SGLARSGRMLASDWEEVRPDMVILG----KALGG-GVIPVSAVLAD-KEVMLCIQPG------------EHGSTFGGNPL 233 (374)
Q Consensus 172 ~~~~~~g~~~~~~~~~~~~d~~s~s----K~~~~-G~~~~G~~~~~-~~~~~~~~~~------------~~~~~~~~~~~ 233 (374)
+.+.. +.....+..+|++++| |++++ |. +|+++.+ +.+.+.+... ..+.++..+.+
T Consensus 162 ~~g~~----~~~~~~~~~~d~~~~s~~~~K~l~~~g~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (374)
T 3uwc_A 162 TILGR----INDKFVGSWGQFACFSLHPLKNLNVWSD--AGVIITHSDEYAEKLRLYRNHGLINRDVCVEYGINCRMDTI 235 (374)
T ss_dssp CTTCE----ETTEETTSSSSEEEEECSSSSSSCCSSC--CEEEEESCHHHHHHHHHHTBTTEEETTEESSCCCBCBCCHH
T ss_pred ccCce----eCCeeccccccEEEEeCCCCCcCCccce--eEEEEeCCHHHHHHHHHHHhcCccccCccccccccCCCCHH
Confidence 84321 1122233335777555 99986 54 6677665 4554443321 11233444555
Q ss_pred HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHH--hCCCceeeEEEEeeeEEEEeccCCCchhHHHHHHHHHHCCe
Q 017259 234 ASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQ--QFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGI 311 (374)
Q Consensus 234 ~~~aa~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gi 311 (374)
.++++...++.+ +++.++.+++.+++.+.|+++.. .++ ... ......+..+.+... +..++.+.|.++||
T Consensus 236 ~aa~~~~~~~~~--~~~~~~~~~~~~~l~~~l~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~----~~~~l~~~L~~~gi 307 (374)
T 3uwc_A 236 QAVIANRLMNQL--ETITEKRRGIAHLYDQSFVDLSEFIDVP-VRR-EGVYHVFHIYVLRVK----YRDQLFQYLKDNGI 307 (374)
T ss_dssp HHHHHHHHGGGH--HHHHHHHHHHHHHHHHHTGGGTTTEECC-CCC-TTEECCCSSEEEEET----THHHHHHHHHHTTB
T ss_pred HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhccCCCeEEec-cCC-CCCceeeEEEEEEcC----CHHHHHHHHHHCCC
Confidence 555544433322 34566666777777776665431 111 000 011223222333322 57899999999999
Q ss_pred EeccCC---------------------------CCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 017259 312 LAKPTH---------------------------DTIVRLTPPLSISSNELQEGSKALHDVLE 346 (374)
Q Consensus 312 ~v~~~~---------------------------~~~lRi~~~~~~~~e~i~~~~~~l~~~~~ 346 (374)
.+++.. ...+|++++..+|++|+++++++|+++++
T Consensus 308 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lrl~~~~~~t~edi~~~~~~l~~~l~ 369 (374)
T 3uwc_A 308 EVKIHYPIAMHLQPAAKSLGYQQGDFPMAEKHGEAVITLPAHPYLTEEEINYIIKKVREFYL 369 (374)
T ss_dssp CCBCSCSSCGGGSGGGGGGCCCTTSCHHHHHHHHHEEEECCCTTSCHHHHHHHHHHHHHHHH
T ss_pred ccccCCCCccccChhhhhcCCccCCCccHHHHHhCEEEccCCCCCCHHHHHHHHHHHHHHHH
Confidence 998763 17899999999999999999999999998
No 167
>3mc6_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxyl phosphate; HET: LLP; 3.15A {Saccharomyces cerevisiae}
Probab=99.92 E-value=9.3e-25 Score=211.41 Aligned_cols=301 Identities=12% Similarity=0.065 Sum_probs=197.2
Q ss_pred HHHHHHHHhcccCCC----eEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccCCccccc
Q 017259 23 FPVFAERLTSMFGYD----MVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIR 98 (374)
Q Consensus 23 ~~~l~~~l~~~~~~~----~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~ 98 (374)
..++++++++++|.+ ++++++||++|+..++++++.+....+|.+ +++|++..++|.+....+...+.... ..
T Consensus 109 ~~~~~~~la~~~g~~~~~~~~~~~~ggt~a~~~a~~a~~~~~~~~~g~~--~~~Vi~~~~~h~~~~~~~~~~G~~~~-~v 185 (497)
T 3mc6_A 109 ESEVVSMVLRMFNAPSDTGCGTTTSGGTESLLLACLSAKMYALHHRGIT--EPEIIAPVTAHAGFDKAAYYFGMKLR-HV 185 (497)
T ss_dssp HHHHHHHHHHHTTCCTTTCCEEEESSHHHHHHHHHHHHHHHHHHHSCCS--SCEEEEETTSCHHHHHHHHHSCCEEE-EE
T ss_pred HHHHHHHHHHHhCCCCCCCeEEEcCcHHHHHHHHHHHHHHHHHhcCCCC--CceEEEeCCccHHHHHHHHHcCCeEE-EE
Confidence 345777777777655 799999999999999999976532334422 37899999987654443333322111 11
Q ss_pred cCCCCCC-CceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEeccccCCccc
Q 017259 99 GFGPLLP-GHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARS 177 (374)
Q Consensus 99 ~~~~~~~-~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~~~~~~ 177 (374)
+... +.. .|+++|+++++ ++++++++++++|++|.+.+ +++|.++|++||+++|+|++|+++...
T Consensus 186 ---~~~~~~~~----~d~~~l~~~i~---~~~~~v~~~~p~nptG~~~~----l~~i~~la~~~g~~livD~a~~~~~~~ 251 (497)
T 3mc6_A 186 ---ELDPTTYQ----VDLGKVKKFIN---KNTVLLVGSAPNFPHGIADD----IEGLGKIAQKYKLPLHVDSCLGSFIVS 251 (497)
T ss_dssp ---CBCTTTCS----BCTTTTGGGCC---SSEEEEEEETTCTTTCCCCS----CTTTTTHHHHTTCCEEEETTTTHHHHG
T ss_pred ---ecCcccCc----CCHHHHHHHHh---hCCEEEEEECCCCCCCcCCC----HHHHHHHHHHhCCEEEEECcchhhhhh
Confidence 1100 001 16788888886 57899999999999999988 999999999999999999999854221
Q ss_pred -----c--c--CcccccCCCCCcEE--EecccccCCccchhhheeCHHHHhhcCCC----CCCC-----CC--CCCHHHH
Q 017259 178 -----G--R--MLASDWEEVRPDMV--ILGKALGGGVIPVSAVLADKEVMLCIQPG----EHGS-----TF--GGNPLAS 235 (374)
Q Consensus 178 -----g--~--~~~~~~~~~~~d~~--s~sK~~~~G~~~~G~~~~~~~~~~~~~~~----~~~~-----~~--~~~~~~~ 235 (374)
| . .+.....+ .|++ +++|.+.+|. ++|+++.+++........ ..+. ++ +.+....
T Consensus 252 f~~~~~~~~~~~~~~~~~g--~d~~~~s~~K~l~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 328 (497)
T 3mc6_A 252 FMEKAGYKNLPLLDFRVPG--VTSISCDTHKYGFAPK-GSSVIMYRNSDLRMHQYYVNPAWTGGLYGSPTLAGSRPGAIV 328 (497)
T ss_dssp GGTTTTCCSCCCCSTTSTT--CCEEEEETTTTTCCCS-SCEEEECSSHHHHTTTSCCBTTCTTSCBCCSSSCSSCBHHHH
T ss_pred hhhhhcccCCccccccCCC--CcEEEECchhhcCCCC-CceeEEecCHHHHhhhhcccccccCCCcCCcCcccCCcchhH
Confidence 1 1 12222223 3555 4458887888 899988876654443211 1111 11 1122334
Q ss_pred HHHHHHHHHHhhh---cHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCchhHHHHHHHHHHCCeE
Q 017259 236 AVAIASLDVIRDE---KLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGIL 312 (374)
Q Consensus 236 ~aa~~al~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~ 312 (374)
++..++++.+..+ ++.++..++.+++.+.|++. +|++.....+.+.++.+..+.. +..++.+.|.++||.
T Consensus 329 ~a~~aal~~l~~~~~~~~~~~~~~~~~~l~~~L~~~---~~g~~~~~~~~~~~v~~~~~~~----~~~~l~~~L~~~Gi~ 401 (497)
T 3mc6_A 329 VGCWATMVNMGENGYIESCQEIVGAAMKFKKYIQEN---IPDLDIMGNPRYSVISFSSKTL----NIHELSDRLSKKGWH 401 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS---CTTCEECSCCCSSEEEEECTTT----THHHHHHHHHTTTCB
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhc---CCCEEEecCCCeeEEEEeCCCC----CHHHHHHHHHhCCEE
Confidence 4455556555443 44556666677777766652 2233222234566666655432 688999999999999
Q ss_pred eccCC-CCEEEEecCCCCCHHHHHHHHHHHHHHHhccCCcC
Q 017259 313 AKPTH-DTIVRLTPPLSISSNELQEGSKALHDVLELDLPKM 352 (374)
Q Consensus 313 v~~~~-~~~lRi~~~~~~~~e~i~~~~~~l~~~~~~~~~~~ 352 (374)
++... ++.+|++++ ..+++++++++++|+++++ ++...
T Consensus 402 v~~~~~~~~~ri~~~-~~t~e~i~~~~~~L~~~l~-~~~~~ 440 (497)
T 3mc6_A 402 FNALQKPVALHMAFT-RLSAHVVDEICDILRTTVQ-ELKSE 440 (497)
T ss_dssp CEECCSSCCEEEECC-TTTTCTHHHHHHHHHHHHH-HHTCC
T ss_pred EecCCCCCeEEEEEe-CCCHHHHHHHHHHHHHHHH-HHHhC
Confidence 88764 567899988 7799999999999999998 66544
No 168
>1b9h_A AHBA synthase, protein (3-amino-5-hydroxybenzoic acid synthase); rifamycin biosynthesis (RIFD gene); HET: PLP; 2.00A {Amycolatopsis mediterranei} SCOP: c.67.1.4 PDB: 1b9i_A*
Probab=99.92 E-value=2.9e-24 Score=201.33 Aligned_cols=304 Identities=14% Similarity=0.122 Sum_probs=200.3
Q ss_pred hHHHHHHHhccccCcCCCCCcHHHHHHHHhcccCCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCC
Q 017259 2 KALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFH 81 (374)
Q Consensus 2 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yh 81 (374)
+++.+++.++. ..++..+...++++.++++++.++.++++||++|++.+++.+. ..+| |+|++..++|+
T Consensus 21 ~a~~~~l~~~~--~~~~~~~~~~~l~~~la~~~~~~~~i~~~sGt~al~~~l~~l~----~~~g-----d~Vi~~~~~~~ 89 (388)
T 1b9h_A 21 NGLVRALEQGQ--WWRMGGDEVNSFEREFAAHHGAAHALAVTNGTHALELALQVMG----VGPG-----TEVIVPAFTFI 89 (388)
T ss_dssp HHHHHHHHTSC--CBTTTCSHHHHHHHHHHHHTTCSEEEEESCHHHHHHHHHHHTT----CCTT-----CEEEEESSSCT
T ss_pred HHHHHHHHcCC--eeecCCHHHHHHHHHHHHHhCCCeEEEeCCHHHHHHHHHHHcC----CCCc-----CEEEECCCccH
Confidence 45555555432 2335577899999999999988877777888999999998873 3556 99999999998
Q ss_pred CcccccccccCCccccccCCCCCCCceeccC-CCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHh
Q 017259 82 GRTLAAISMSCDNEAIRGFGPLLPGHLKVDF-GDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSK 160 (374)
Q Consensus 82 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~ 160 (374)
+....+...+...... +...+ .+ .|+++|+++++ +++++++ ++|++|.+.+ +++|.++|++
T Consensus 90 ~~~~~~~~~g~~~~~v----~~~~~----~~~~d~~~l~~~i~---~~~~~v~---~~n~tG~~~~----l~~i~~la~~ 151 (388)
T 1b9h_A 90 SSSQAAQRLGAVTVPV----DVDAA----TYNLDPEAVAAAVT---PRTKVIM---PVHMAGLMAD----MDALAKISAD 151 (388)
T ss_dssp HHHHHHHHTTCEEEEE----CBCTT----TCCBCHHHHHHHCC---TTEEEEC---CBCGGGCCCC----HHHHHHHHHH
T ss_pred HHHHHHHHcCCEEEEE----ecCCC----cCCCCHHHHHHhcC---cCceEEE---EeCCccCcCC----HHHHHHHHHH
Confidence 8765543332221111 11000 01 17899998886 4688777 5566888887 9999999999
Q ss_pred cCCEEEEeccccC-CcccccCcccccCCCCCcEEEec--ccccCCccchhhheeCHH-H--HhhcC---CCC--------
Q 017259 161 YNILMIADEIQSG-LARSGRMLASDWEEVRPDMVILG--KALGGGVIPVSAVLADKE-V--MLCIQ---PGE-------- 223 (374)
Q Consensus 161 ~~i~li~Dea~~~-~~~~g~~~~~~~~~~~~d~~s~s--K~~~~G~~~~G~~~~~~~-~--~~~~~---~~~-------- 223 (374)
||++||+|++|+. ..+.|.. ...++ ..++.||| |+++| . ++|+++++++ + .+.+. ...
T Consensus 152 ~~~~li~D~a~~~g~~~~~~~--~~~~~-~i~~~S~s~~K~l~g-~-~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (388)
T 1b9h_A 152 TGVPLLQDAAHAHGARWQGKR--VGELD-SIATFSFQNGKLMTA-G-EGGAVVFPDGETEKYETAFLRHSCGRPRDDRRY 226 (388)
T ss_dssp HTCCBCEECTTCTTCEETTEE--GGGSS-SCEEEECCTTSSSCS-S-SCEEEEECTTCHHHHHHHHHHTBTTCCTTCSSC
T ss_pred cCCEEEEecchhcCCccCCee--ccccc-ceEEEEccCCCcccC-C-CeEEEEECCHHHHHHHHHHHHHhCCCCccCccc
Confidence 9999999999983 4332222 12222 34566777 56655 4 7888888765 5 45442 110
Q ss_pred ----CCCCCCCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHhCCCceeeE------EEEeeeEEEEeccC
Q 017259 224 ----HGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEV------RGRGLFNAVEFDKT 293 (374)
Q Consensus 224 ----~~~~~~~~~~~~~aa~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~------~~~g~~~~~~~~~~ 293 (374)
.+.++..+.+.++++...++.+. +..++.+++.+++.+.|+++ |++.... +..+.++++.++..
T Consensus 227 ~~~~~g~~~~~~~~~~a~~~~~~~~l~--~~~~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (388)
T 1b9h_A 227 FHKIAGSNMRLNEFSASVLRAQLARLD--EQIAVRDERWTLLSRLLGAI----DGVVPQGGDVRADRNSHYMAMFRIPGL 300 (388)
T ss_dssp CCCSCCCBCBCBHHHHHHHHHHHTTHH--HHHHHHHHHHHHHHHHHHTS----TTCEECCCCTTCCBCCCSEEEEECTTC
T ss_pred eeecccccCCcCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhccC----CCccccCCCcCCCccceEEEEEEeCCc
Confidence 01223356666555555554332 34566666677776666543 2222111 22367788877642
Q ss_pred CCchhHHHHHHHHHHCCeEeccCCC---------------------------------CEEEEecCCCC-CHHHHHHHHH
Q 017259 294 ALPVSAYDICLKMKERGILAKPTHD---------------------------------TIVRLTPPLSI-SSNELQEGSK 339 (374)
Q Consensus 294 ~~~~~~~~~~~~l~~~Gi~v~~~~~---------------------------------~~lRi~~~~~~-~~e~i~~~~~ 339 (374)
. +.+..++.+.|.++||.++++.. ..+|++++..+ |++|++++++
T Consensus 301 ~-~~~~~~l~~~L~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~t~edi~~~~~ 379 (388)
T 1b9h_A 301 T-EERRNALVDRLVEAGLPAFAAFRAIYRTDAFWELGAPDESVDAIARRCPNTDAISSDCVWLHHRVLLAGEPELHATAE 379 (388)
T ss_dssp C-HHHHHHHHHHHHHTTCCEEECCCCGGGSHHHHHSSCCSSCHHHHHHTCHHHHHHHHHEEEEEGGGGGSCHHHHHHHHH
T ss_pred C-cccHHHHHHHHHHCCCCcccccCccccChHhHhcCCCcccccccccCCHHHHHHHhCeEEecCCCCCCCHHHHHHHHH
Confidence 0 12467899999999999975421 25899988888 9999999999
Q ss_pred HHHHHHh
Q 017259 340 ALHDVLE 346 (374)
Q Consensus 340 ~l~~~~~ 346 (374)
.|+++++
T Consensus 380 ~l~~~~~ 386 (388)
T 1b9h_A 380 IIADAVA 386 (388)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9999886
No 169
>3frk_A QDTB; aminotransferase, sugar-modification, natural porduct; HET: TQP; 2.15A {Thermoanaerobacteriumthermosaccharolyticum}
Probab=99.92 E-value=8.2e-25 Score=203.98 Aligned_cols=283 Identities=13% Similarity=0.131 Sum_probs=190.1
Q ss_pred CCCCcHHHHHHHHhcccCCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccCCcccc
Q 017259 18 FYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAI 97 (374)
Q Consensus 18 ~~~~~~~~l~~~l~~~~~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~ 97 (374)
+..+...++++.++++++.+++++++||++|++.+++.+. .++| |+|++..++|++........+...
T Consensus 33 ~~~~~~~~l~~~la~~~~~~~~i~~~sgt~al~~~l~~l~----~~~g-----d~Vi~~~~~~~~~~~~~~~~g~~~--- 100 (373)
T 3frk_A 33 ILGDEDKKFEQEFADYCNVNYCIGCGNGLDALHLILKGYD----IGFG-----DEVIVPSNTFIATALAVSYTGAKP--- 100 (373)
T ss_dssp SSSHHHHHHHHHHHHHHTSSEEEEESCHHHHHHHHHHHTT----CCTT-----CEEEEETTSCTHHHHHHHHHSCEE---
T ss_pred cCCchHHHHHHHHHHHhCCCeEEEeCCHHHHHHHHHHHcC----CCCc-----CEEEECCCCcHHHHHHHHHcCCEE---
Confidence 4567889999999999999999999999999999998873 4566 999999999988655543333221
Q ss_pred ccCCCCCCCceeccCC------CHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEeccc
Q 017259 98 RGFGPLLPGHLKVDFG------DITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQ 171 (374)
Q Consensus 98 ~~~~~~~~~~~~~~~~------d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~ 171 (374)
..++.+ |+++++++++ +++++++ +.|++|...+ +++|.++|++||+++|+|++|
T Consensus 101 ----------~~~~~~~~~~~~d~~~l~~~l~---~~~~~v~---~~n~~G~~~~----l~~i~~l~~~~~~~li~D~a~ 160 (373)
T 3frk_A 101 ----------IFVEPDIRTYNIDPSLIESAIT---EKTKAII---AVHLYGQPAD----MDEIKRIAKKYNLKLIEDAAQ 160 (373)
T ss_dssp ----------EEECEETTTTEECGGGTGGGCC---TTEEEEE---EECCTTCCCC----HHHHHHHHHHHTCEEEEECTT
T ss_pred ----------EEEeccccccCcCHHHHHHhcC---CCCeEEE---EECCCcCccc----HHHHHHHHHHcCCEEEEECCc
Confidence 112211 7888888876 4788887 3457788887 999999999999999999999
Q ss_pred cCCcccccCcccccCCCCCcEEEec----ccccC-CccchhhheeC-HHHHhhcCCC------------CCCCCCCCCHH
Q 017259 172 SGLARSGRMLASDWEEVRPDMVILG----KALGG-GVIPVSAVLAD-KEVMLCIQPG------------EHGSTFGGNPL 233 (374)
Q Consensus 172 ~~~~~~g~~~~~~~~~~~~d~~s~s----K~~~~-G~~~~G~~~~~-~~~~~~~~~~------------~~~~~~~~~~~ 233 (374)
+.... +.....+..+|+.++| |.+++ |. +|+++.+ +++.+.+... ..+.++..+.+
T Consensus 161 ~~g~~----~~~~~~~~~~d~~~~S~~~~K~l~~~g~--gg~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~g~~~~~~~~ 234 (373)
T 3frk_A 161 AHGSL----YKGMKVGSLGDAAGFSFYPAKNLGSLGD--GGAVVTNDKDLAEKIKALSNYGSEKKYHHIYKGFNSRLDEL 234 (373)
T ss_dssp CTTCE----ETTEETTSSSSEEEEECCTTSSSCCSSS--CEEEEESCHHHHHHHHHHHBTTCSBTTBCCSCCCBCCCCHH
T ss_pred ccCCE----ECCEeccccccEEEEeCcCCCccCccce--eEEEEeCCHHHHHHHHHHHhcCcccCCccccccccCCCCHH
Confidence 83211 1112233335777665 99987 53 6677765 4454444311 12334556777
Q ss_pred HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCchhHHHHHHHHHHCCeEe
Q 017259 234 ASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILA 313 (374)
Q Consensus 234 ~~~aa~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v 313 (374)
.++++...++.+ +++.++.+++.+++.+.|+++...++... ......+..+.+... +..++.+.|.++||.+
T Consensus 235 ~aa~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~----~~~~l~~~L~~~gI~v 306 (373)
T 3frk_A 235 QAGFLRVKLKYL--DKWNEERRKIAQKYIAGINNPNVIIPVEA--DYAKHVWYTFVIRSE----KRDELQKYLNNNGIGT 306 (373)
T ss_dssp HHHHHHHHHHTH--HHHHHHHHHHHHHHHHHCCCTTEECCCCC--TTEECCCSSEEEEES----SHHHHHHHHHHTTBCC
T ss_pred HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhccCceEeccCC--CCCceeeEEEEEEeC----CHHHHHHHHHHCCCCc
Confidence 666655554433 34566666667777666654421111000 011223222333322 5789999999999999
Q ss_pred ccCC---------------------------CCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 017259 314 KPTH---------------------------DTIVRLTPPLSISSNELQEGSKALHDVLE 346 (374)
Q Consensus 314 ~~~~---------------------------~~~lRi~~~~~~~~e~i~~~~~~l~~~~~ 346 (374)
++.. ...+|++++..+|++|+++++++|+++..
T Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lrl~~~~~~t~~di~~~~~~l~~~~~ 366 (373)
T 3frk_A 307 LIHYPIPIHLQQAYKDLGFKTGNFPIAEKIANEILSIPIWYGMKNEEIEYVIDKINAWKL 366 (373)
T ss_dssp BCSCSSCGGGSGGGGGGCCCTTSSHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHHTCC-
T ss_pred ccCcCCccccChHHHhcCCCCCCCHHHHHHHhCEEEccCCCCCCHHHHHHHHHHHHHHhh
Confidence 7532 16899999999999999999998876654
No 170
>2bkw_A Alanine-glyoxylate aminotransferase 1; analine-glyoxylate aminotransferase, pyridoxal-5-phosphate, SAD, glycolate pathway; HET: LLP; 2.57A {Saccharomyces cerevisiae} SCOP: c.67.1.3
Probab=99.92 E-value=2.7e-24 Score=201.05 Aligned_cols=284 Identities=14% Similarity=0.111 Sum_probs=192.9
Q ss_pred HHHHHHHHhcccCC------CeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEe-ccCCCCcccccccccCCcc
Q 017259 23 FPVFAERLTSMFGY------DMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSC-CGCFHGRTLAAISMSCDNE 95 (374)
Q Consensus 23 ~~~l~~~l~~~~~~------~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~-~~~yhg~~~~~~~~~~~~~ 95 (374)
..+++++++++++. +++++++||++|++.+++.+... .++| |+|++. .+.||..........+.
T Consensus 40 ~~~~~~~l~~~~~~~~~~~~~~v~~~~g~t~al~~~~~~~~~~--~~~g-----d~vlv~~~~~~~~~~~~~~~~~g~-- 110 (385)
T 2bkw_A 40 FQRVLKNTRAVFKSAAASKSQPFVLAGSGTLGWDIFASNFILS--KAPN-----KNVLVVSTGTFSDRFADCLRSYGA-- 110 (385)
T ss_dssp HHHHHHHHHHHTTCCGGGTCEEEEEESCTTHHHHHHHHHHSCT--TCSC-----CEEEEECSSHHHHHHHHHHHHTTC--
T ss_pred HHHHHHHHHHHhCCCCCCCCceEEEcCchHHHHHHHHHHHhcc--CCCC-----CeEEEEcCCcchHHHHHHHHHcCC--
Confidence 45566777776533 68999999999999999988300 0566 888777 55665543111111111
Q ss_pred ccccCCCCCCCceeccC------CCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhc--CCEEEE
Q 017259 96 AIRGFGPLLPGHLKVDF------GDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKY--NILMIA 167 (374)
Q Consensus 96 ~~~~~~~~~~~~~~~~~------~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~--~i~li~ 167 (374)
.+..++. .|+++|++++++ .+++++++++++|++|.+.+ +++|.++|++| |++||+
T Consensus 111 ----------~~~~v~~~~~~~~~d~~~l~~~l~~--~~~~~v~~~~~~nptG~~~~----l~~i~~~~~~~~~~~~li~ 174 (385)
T 2bkw_A 111 ----------QVDVVRPLKIGESVPLELITEKLSQ--NSYGAVTVTHVDTSTAVLSD----LKAISQAIKQTSPETFFVV 174 (385)
T ss_dssp ----------EEEEECCSSTTSCCCHHHHHHHHHH--SCCSEEEEESEETTTTEECC----HHHHHHHHHHHCTTSEEEE
T ss_pred ----------ceEEEecCCCCCCCCHHHHHHHHhc--CCCCEEEEEccCCCcCeEcC----HHHHHHHHHhhCCCCEEEE
Confidence 1111221 279999999984 26788999999999999998 99999999999 999999
Q ss_pred eccccCCcccccCcccccCCCCCcEE--EecccccCCccchhhheeCHHHHh-hcCC----------------------C
Q 017259 168 DEIQSGLARSGRMLASDWEEVRPDMV--ILGKALGGGVIPVSAVLADKEVML-CIQP----------------------G 222 (374)
Q Consensus 168 Dea~~~~~~~g~~~~~~~~~~~~d~~--s~sK~~~~G~~~~G~~~~~~~~~~-~~~~----------------------~ 222 (374)
||+|+ ++.. .+... ...+|++ |++|+++|+. ++|++++++++++ .+.. .
T Consensus 175 D~a~~-~~~~--~~~~~--~~~~d~~~~s~~K~~~~~~-G~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (385)
T 2bkw_A 175 DAVCS-IGCE--EFEFD--EWGVDFALTASQKAIGAPA-GLSISLCSSRFMDYALNDSKNGHVHGYFSSLRRWTPIMENY 248 (385)
T ss_dssp ECTTT-TTTS--CCCTT--TTTCSEEEEESSSTTCCCS-CEEEEEECHHHHHHHTCHHHHCCCSCSTTCHHHHHHHHHHH
T ss_pred ECccc-cCCc--ccccc--ccCceEEEecCccccccCC-cceEEEEcHHHHHHHHhhccCCCCCceeecHHHHhhHHHhh
Confidence 99997 2211 11222 2345655 5679988765 6789999887766 4421 0
Q ss_pred CC--CC-CCCCCHHHHHHHHHHHHHHhhh---cHHHHHHHHHHHHHHHH-HHHHHhCCCceeeE--E-EEeeeEEEEecc
Q 017259 223 EH--GS-TFGGNPLASAVAIASLDVIRDE---KLAERSAHLGEELRQHL-FKIQQQFPNYVKEV--R-GRGLFNAVEFDK 292 (374)
Q Consensus 223 ~~--~~-~~~~~~~~~~aa~~al~~~~~~---~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~~~--~-~~g~~~~~~~~~ 292 (374)
.. +. .++.+..++.++.++++.+.+. ++.++++++++++.+.| +++ .+ ...... . ..+.++++.+++
T Consensus 249 ~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~--g~-~~~~~~~~~~~~~~~~~~~~~~ 325 (385)
T 2bkw_A 249 EAGKGAYFATPPVQLINSLDVALKEILEEGLHKRWDLHREMSDWFKDSLVNGL--QL-TSVSRYPSNMSAHGLTAVYVAD 325 (385)
T ss_dssp HTTCCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTTT--CC-EESSCSSSTTBCSSCEEEECSC
T ss_pred hccCCCCCCCCCHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHhc--Cc-eecccCcccccCCceEEEecCC
Confidence 00 11 2356777888888888876543 44666777777777777 543 11 011100 0 246778877652
Q ss_pred CCCchhHHHHHHHHHHCCeEeccCC-----CCEEEEe-cC---CCCCHHHHHHHHHHHHHHHh
Q 017259 293 TALPVSAYDICLKMKERGILAKPTH-----DTIVRLT-PP---LSISSNELQEGSKALHDVLE 346 (374)
Q Consensus 293 ~~~~~~~~~~~~~l~~~Gi~v~~~~-----~~~lRi~-~~---~~~~~e~i~~~~~~l~~~~~ 346 (374)
..++.+.|.++||.++++. .+++||+ ++ +..+++++++++++|+++++
T Consensus 326 ------~~~~~~~l~~~gi~v~~g~~~~~~~~~iRis~~~~~~~~~~~e~i~~~~~~l~~~~~ 382 (385)
T 2bkw_A 326 ------PPDVIAFLKSHGVVIAGGIHKDIGPKYIRIGHMGVTACNKNLPYMKNCFDLIKLALQ 382 (385)
T ss_dssp ------HHHHHHHHHHTTEECBCCCCTTTGGGEEEECCCGGGTSSTTCTHHHHHHHHHHHHTT
T ss_pred ------HHHHHHHHHHCCeEEeCCCCcccCCCEEEEEccccccccCCHHHHHHHHHHHHHHHH
Confidence 5789999999999998863 5799999 55 35799999999999999887
No 171
>4eu1_A Mitochondrial aspartate aminotransferase; ssgcid, structural genomics, SEA structural genomics center for infectious disease; HET: LLP; 2.30A {Trypanosoma brucei}
Probab=99.92 E-value=5e-25 Score=208.06 Aligned_cols=297 Identities=13% Similarity=0.107 Sum_probs=193.2
Q ss_pred CCcHHHHHHHHhccc-C-------CCeE--EecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCccccccc
Q 017259 20 NDKFPVFAERLTSMF-G-------YDMV--LPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAIS 89 (374)
Q Consensus 20 ~~~~~~l~~~l~~~~-~-------~~~~--~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~ 89 (374)
.....++++.+++++ + .+++ ..+.+|+++++.+..+++.. .++| |+|++.+|+|+++......
T Consensus 78 ~~g~~~lr~~ia~~~~~~~~~~~~~~~i~~~~~~~g~ga~~~~~~~~~~~--~~~g-----d~Vlv~~p~y~~~~~~~~~ 150 (409)
T 4eu1_A 78 VTGIASFVEEAQKLCFGPTCAALRDGRIASCQTLGGTGALRIGGDLLNRF--VANC-----NRIYGPDVGYPNHESIFAK 150 (409)
T ss_dssp TTCCHHHHHHHHHHHHCSSCHHHHTTCEEEEEESHHHHHHHHHHHHGGGT--SSSC-----CEEEEESSCCTHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHcCCCchhhccCceeeeecccchHHHHHHHHHHHHh--cCCC-----CEEEEeCCCcHhHHHHHHH
Confidence 444567777777754 3 3466 45999999999877655432 5677 9999999999877655544
Q ss_pred ccCCccccccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEec
Q 017259 90 MSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADE 169 (374)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~De 169 (374)
.+........... .+.. .|+++++++++++++.++++++++++|++|.+. +.+.+++|.++|++||+++|+||
T Consensus 151 ~g~~~~~~~~~~~--~~~~----~d~~~l~~~l~~~~~~~~~i~~~~p~NPtG~~~-~~~~l~~i~~~~~~~~~~li~De 223 (409)
T 4eu1_A 151 AGMELTPYSYYDP--ATKG----LNLAGMLECLDKAPEGSVILVHACAHNPTGVDP-THDDWRQVCDVIKRRNHIPFVDM 223 (409)
T ss_dssp TTCEEEEECCEET--TTTE----ECHHHHHHHHHHSCTTCEEEEESSSCTTTCCCC-CHHHHHHHHHHHHHTTCEEEEEE
T ss_pred cCCeEEEEEeecC--cCCc----CcHHHHHHHHHhCCCCcEEEEECCCCCCCCCCC-CHHHHHHHHHHHHhCCcEEEEec
Confidence 3322111100000 0011 179999999987655678888888899999777 79999999999999999999999
Q ss_pred cccCCccccc---Ccccc-cCCCCCcE---EEeccccc-CCccchhhh---eeCHH----HHhhcCCCCCCCCCCCCHHH
Q 017259 170 IQSGLARSGR---MLASD-WEEVRPDM---VILGKALG-GGVIPVSAV---LADKE----VMLCIQPGEHGSTFGGNPLA 234 (374)
Q Consensus 170 a~~~~~~~g~---~~~~~-~~~~~~d~---~s~sK~~~-~G~~~~G~~---~~~~~----~~~~~~~~~~~~~~~~~~~~ 234 (374)
+|+++.+.+. ..... ..+..+++ .||||.++ +|+ |+||+ +.+++ +.+.+.......+++.+.++
T Consensus 224 ~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~-riG~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 302 (409)
T 4eu1_A 224 AYQGFATGQLDYDAFVPRHLVDMVPNLIVAQSFSKNFGLYGH-RCGALHISTASAEEAKRLVSQLALLIRPMYNNPPLYG 302 (409)
T ss_dssp SCTTTTTSCHHHHTHHHHHHHTTSSCCEEEEECTTTSSCGGG-CCEEEEEECSSHHHHHHHHHHHHHHHHHHHSSCCHHH
T ss_pred cccccccCCcccchHHHHHHHhhCCcEEEEecCcccccCccC-CceEEEEEeCCHHHHHHHHHHHHHHHhhhcCCCChHH
Confidence 9998865541 11211 11333443 38999998 799 99995 55666 55555432233455667888
Q ss_pred HHHHHHHHHHHh--------hhcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEE-eeeEEEEeccCCCchhHHHHHHH
Q 017259 235 SAVAIASLDVIR--------DEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGR-GLFNAVEFDKTALPVSAYDICLK 305 (374)
Q Consensus 235 ~~aa~~al~~~~--------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~ 305 (374)
+.++.++++... .++.+++++++++++.+.|++.. .|.......+. +.+.|..+ . .+++..
T Consensus 303 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g--~~~~~~~~~~~~~~~~~~~~-------~-~~~~~~ 372 (409)
T 4eu1_A 303 AWVVSSILKDPQLTALWKKELKQMSSRIAEVRKRLVSELKACG--SVHDWSHIERQVGMMAYTGL-------T-REQVEL 372 (409)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--CCSCCHHHHHSCSSEEECCC-------C-HHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CCCCcceecCCceEEEEeCC-------C-HHHHHH
Confidence 888888776321 12455666667777777766542 11101111223 34444222 2 345666
Q ss_pred HH-HCCeEeccCCCCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 017259 306 MK-ERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVLE 346 (374)
Q Consensus 306 l~-~~Gi~v~~~~~~~lRi~~~~~~~~e~i~~~~~~l~~~~~ 346 (374)
++ ++||.+.++. ||+++. .+++++++++++|+++++
T Consensus 373 ll~~~gv~v~p~~----Ri~~~~-~~~~~i~~~~~~l~~~l~ 409 (409)
T 4eu1_A 373 LRSEYHIYMTLNG----RAAVSG-LNSTNVEYVSQAIHNVTK 409 (409)
T ss_dssp HHHHHCEECCTTC----EEEGGG-CCTTTHHHHHHHHHHHHC
T ss_pred HHHcCCEEEcCCC----EEEEEe-cCHhhHHHHHHHHHHHhC
Confidence 66 5699999873 888653 566779999999988763
No 172
>3nyt_A Aminotransferase WBPE; PLP binding, nucleotide-sugar binding; HET: ULP; 1.30A {Pseudomonas aeruginosa} PDB: 3nys_A* 3nyu_A* 3nu8_A* 3nu7_A* 3nub_A*
Probab=99.92 E-value=1.1e-24 Score=202.67 Aligned_cols=285 Identities=15% Similarity=0.177 Sum_probs=196.7
Q ss_pred CCCCcHHHHHHHHhcccCCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccCCcccc
Q 017259 18 FYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAI 97 (374)
Q Consensus 18 ~~~~~~~~l~~~l~~~~~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~ 97 (374)
++.+...++++.++++++.+++++++||++|++.+++.+. ..+| |+|++..++|++....+...+....+.
T Consensus 32 ~~~~~~~~l~~~la~~~~~~~~~~~~sGt~al~~al~~~~----~~~g-----d~Vi~~~~~~~~~~~~~~~~G~~~~~~ 102 (367)
T 3nyt_A 32 ILGPEVTELEDRLADFVGAKYCISCANGTDALQIVQMALG----VGPG-----DEVITPGFTYVATAETVALLGAKPVYV 102 (367)
T ss_dssp SSCHHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHTT----CCTT-----CEEEEESSSCTHHHHHHHHTTCEEEEE
T ss_pred cCChHHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHhC----CCCc-----CEEEECCCccHHHHHHHHHcCCEEEEE
Confidence 4577889999999999999999999999999999999874 4566 999999999987665554433222111
Q ss_pred ccCCCCCCCceeccC-CCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEecccc-CCc
Q 017259 98 RGFGPLLPGHLKVDF-GDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQS-GLA 175 (374)
Q Consensus 98 ~~~~~~~~~~~~~~~-~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~-~~~ 175 (374)
+...+ .+ .|+++++++++ +++++++++ |++|...+ +++|.++|++||++||+|++|+ |..
T Consensus 103 ----~~~~~----~~~~d~~~l~~~i~---~~~~~v~~~---~~~G~~~~----~~~i~~la~~~~~~li~D~a~~~g~~ 164 (367)
T 3nyt_A 103 ----DIDPR----TYNLDPQLLEAAIT---PRTKAIIPV---SLYGQCAD----FDAINAIASKYGIPVIEDAAQSFGAS 164 (367)
T ss_dssp ----CBCTT----TCSBCGGGTGGGCC---TTEEEECCB---CGGGCCCC----HHHHHHHHHHTTCCBEEECTTTTTCE
T ss_pred ----ecCCc----cCCcCHHHHHHhcC---cCCcEEEee---CCccChhh----HHHHHHHHHHcCCEEEEECccccCCe
Confidence 11000 01 17888888885 578888844 45677777 9999999999999999999998 332
Q ss_pred ccccCcccccCCCCCcEEEec----ccccC-Cccchhhhee-CHHHHhhcCCC------------CCCCCCCCCHHHHHH
Q 017259 176 RSGRMLASDWEEVRPDMVILG----KALGG-GVIPVSAVLA-DKEVMLCIQPG------------EHGSTFGGNPLASAV 237 (374)
Q Consensus 176 ~~g~~~~~~~~~~~~d~~s~s----K~~~~-G~~~~G~~~~-~~~~~~~~~~~------------~~~~~~~~~~~~~~a 237 (374)
+.+.. .+...|++++| |.+++ |. +|+++. ++++.+.+... ..+.++..+++.+++
T Consensus 165 ~~~~~-----~~~~~di~~~Sf~~~K~l~~~g~--gg~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~g~~~~~~~~~aa~ 237 (367)
T 3nyt_A 165 YKGKR-----SCNLSTVACTSFFPSAPLGCYGD--GGAIFTNDDELATAIRQIARHGQDRRYHHIRVGVNSRLDTLQAAI 237 (367)
T ss_dssp ETTEE-----TTSSSSEEEEECCTTSSSCCSSC--CEEEEESCHHHHHHHHHHTBTTEEETTEECSCCCBCCCCHHHHHH
T ss_pred ECCee-----ccCCCCEEEEECCCCCcCCCcCc--eeEEEeCCHHHHHHHHHHHhcCCCcCceeeccCcCCCccHHHHHH
Confidence 22221 11122776555 99987 64 667776 46666555321 113567788888888
Q ss_pred HHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCchhHHHHHHHHHHCCeEeccCC
Q 017259 238 AIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTH 317 (374)
Q Consensus 238 a~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~ 317 (374)
+.+.++.+ +++.++.+++.+++.+.|+++...++...........++.+.++ +.+++.+.|.++||.++...
T Consensus 238 ~~~~l~~~--~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~l~~~L~~~GI~~~~~~ 309 (367)
T 3nyt_A 238 LLPKLEIF--EEEIALRQKVAAEYDLSLKQVGIGTPFIEVNNISVYAQYTVRMD------NRESVQASLKAAGVPTAVHY 309 (367)
T ss_dssp HHHHHHTH--HHHHHHHHHHHHHHHHHHHHTTCCCCCCCTTEECCCSSEEEECS------SHHHHHHHHHHHTCCCBCSC
T ss_pred HHHHHHHH--HHHHHHHHHHHHHHHHHhccCCeeccCCCCCCceeeEEEEEEeC------CHHHHHHHHHHCCCceeccC
Confidence 88887755 34567778888888888877632221111111222223333333 47899999999999886432
Q ss_pred ------------------------CCEEEEecCCCCCHHHHHHHHHHHHHH
Q 017259 318 ------------------------DTIVRLTPPLSISSNELQEGSKALHDV 344 (374)
Q Consensus 318 ------------------------~~~lRi~~~~~~~~e~i~~~~~~l~~~ 344 (374)
...+|+.++...|++|++++++.|++.
T Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lp~~~~~t~~~i~~v~~~~~~~ 360 (367)
T 3nyt_A 310 PIPLNKQPAVADEKAKLPVGDKAATQVMSLPMHPYLDTASIKIICAALTNL 360 (367)
T ss_dssp SSCGGGSGGGCCTTCCCHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHHC-
T ss_pred CCccccChhhhccCCCChHHHHHHhCeEEccCCCCCCHHHHHHHHHHHHHH
Confidence 257899999999999999999988643
No 173
>2zy4_A L-aspartate beta-decarboxylase; pyridoxal 5'-phosphate, aminotransferase, lyase; HET: PLP; 2.00A {Alcaligenes faecalis subsp} PDB: 2zy3_A* 2zy5_A* 3fdd_A* 2zy2_A*
Probab=99.92 E-value=1.2e-24 Score=212.02 Aligned_cols=312 Identities=12% Similarity=0.091 Sum_probs=186.8
Q ss_pred CCCCcHHHHHHHHhc-cc-------CCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCccccccc
Q 017259 18 FYNDKFPVFAERLTS-MF-------GYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAIS 89 (374)
Q Consensus 18 ~~~~~~~~l~~~l~~-~~-------~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~ 89 (374)
+..++.+++++++.+ .. ..+++++|+|+++++..+++++....+..+| |+|++.+|+|+++...+..
T Consensus 139 g~~~lr~~ia~~~~~~~~~~~~~~~~~~~I~~t~G~~eal~~~~~~l~~~~l~~~G-----d~Vlv~~P~y~~~~~~~~~ 213 (546)
T 2zy4_A 139 RMLNISEKIVRQYIIREMGADAIPSESVNLFAVEGGTAAMAYIFESLKLNGLLKAG-----DKVAIGMPVFTPYIEIPEL 213 (546)
T ss_dssp SCCHHHHHHHHHHHHHHTTCTTSCGGGEEEEEEEHHHHHHHHHHHHHHHTTSSCTT-----CEEEEEESCCHHHHHHHHS
T ss_pred CCHHHHHHHHHHHHHHhccCCCCCCCcceEEEECCHHHHHHHHHHHhhhhhcCCCC-----CEEEEeCCCCccHHHHHHH
Confidence 334456565554432 11 2368999999999999999886322235677 9999999999887655322
Q ss_pred ccCCccccccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHH--HhcCCEEEE
Q 017259 90 MSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLC--SKYNILMIA 167 (374)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~--~~~~i~li~ 167 (374)
........ ..+...+.. .. .|+++|++.+. ++++++++++++||+|.+. +.+.+++|.++| ++||++||+
T Consensus 214 ~~~g~~~~--~v~~~~~~~-~~-~d~~~l~~~~~---~~~k~v~l~~p~NPtG~~~-~~~~l~~l~~~a~~~~~~~~ii~ 285 (546)
T 2zy4_A 214 AQYALEEV--AINADPSLN-WQ-YPDSELDKLKD---PAIKIFFCVNPSNPPSVKM-DQRSLERVRNIVAEHRPDLMILT 285 (546)
T ss_dssp TTSCCEEE--EEECBGGGT-TB-CCHHHHGGGGS---TTEEEEEEESSCSSSCBCC-CHHHHHHHHHHHHHTCTTCEEEE
T ss_pred cCCCcEEE--EEecCcccC-CC-CCHHHHHHhhC---CCCeEEEEECCCCCCCccC-CHHHHHHHHHHHHhccCCcEEEE
Confidence 11000000 000000000 00 27888877654 5789999888999999877 799999999999 889999999
Q ss_pred eccccCCcccccCcccccCCCCCcEEEeccccc-CCccchhhheeCHH-HHhhcCC------------------------
Q 017259 168 DEIQSGLARSGRMLASDWEEVRPDMVILGKALG-GGVIPVSAVLADKE-VMLCIQP------------------------ 221 (374)
Q Consensus 168 Dea~~~~~~~g~~~~~~~~~~~~d~~s~sK~~~-~G~~~~G~~~~~~~-~~~~~~~------------------------ 221 (374)
||+|+++......+.....+....+.||||.++ +|+ |+||++++++ +++.+..
T Consensus 286 De~y~~~~~~~~s~~~~~~~~~i~~~S~SK~~g~~Gl-RiG~~~~~~~~l~~~l~~~~p~~~~~~l~~~~~~~~~~p~~~ 364 (546)
T 2zy4_A 286 DDVYGTFADDFQSLFAICPENTLLVYSFSKYFGATGW-RLGVVAAHQQNVFDLALDKLQESEKVALDHRYRSLLPDVRSL 364 (546)
T ss_dssp ECTTGGGSTTCCCHHHHCGGGEEEEEESTTTTTCGGG-CEEEEEEESSCHHHHHHHTSCHHHHHHHHHHHTTTCSCGGGC
T ss_pred eCcchhhcccCcCHHHhCCCCEEEEEeCccccCCCCc-ceEEEEECCHHHHHHHHhhcchhhhHHHHHHhhhccccccch
Confidence 999998754221111111111122459999997 799 9999988764 5555411
Q ss_pred ------------CCCCCCCCCCHHHHHHHH--HHHHHHhh-hcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeE
Q 017259 222 ------------GEHGSTFGGNPLASAVAI--ASLDVIRD-EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFN 286 (374)
Q Consensus 222 ------------~~~~~~~~~~~~~~~aa~--~al~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~ 286 (374)
.....+.+.+.+.+.++. +....+.+ +.+.+++++..+..++.+.+... . ++.......+.++
T Consensus 365 ~~~~~~~~~~~~~~~~~~~~~s~~~Q~a~a~~a~~all~~~~~~~~~~r~~~~~r~~~l~~~L~-~-~~~~~~~~~~~~l 442 (546)
T 2zy4_A 365 KFIDRLVADSRAVALNHTAGLSTPQQVQMALFSLFALMDEADEYKHTLKQLIRRRETTLYRELG-M-PPLRDENAVDYYT 442 (546)
T ss_dssp CHHHHHHHHTTTTTTGGGCSSCHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHGGGT-S-SCCCCTTBCCSEE
T ss_pred hhhhhhhhhhHHHHhhccCCCCcHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhcC-C-CcccCCCCeeEEE
Confidence 001222355667666532 11222322 23344444333333332222221 1 1211122345566
Q ss_pred EEEeccC-----CC--------c-hhHHHHHHHHHHCCeEeccCC-----CCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 017259 287 AVEFDKT-----AL--------P-VSAYDICLKMKERGILAKPTH-----DTIVRLTPPLSISSNELQEGSKALHDVLE 346 (374)
Q Consensus 287 ~~~~~~~-----~~--------~-~~~~~~~~~l~~~Gi~v~~~~-----~~~lRi~~~~~~~~e~i~~~~~~l~~~~~ 346 (374)
|++++.- .. + .+...+.+.|.++||.+.|+. .+++||++. ..+++++++++++|+++++
T Consensus 443 ~~~l~~~~~~~~~~~~~~wl~~~~~~~~~l~~ll~~~gV~v~pG~~F~~~~~~iRis~~-~~~~e~i~~~~~~l~~~l~ 520 (546)
T 2zy4_A 443 LIDLQDVTAKLYGEAFSEWAVKQSSTGDMLFRIADETGIVLLPGRGFGSNRPSGRASLA-NLNEYEYAAIGRALRKMAD 520 (546)
T ss_dssp EEEHHHHHHHHHCHHHHHHHHHHCCHHHHHHHHHHHHSCCCEESSCTTCSSCEEEEESS-SSCHHHHHHHHHHHHHHHH
T ss_pred EEEHHHhhcccccHHHHHHhhccCCHHHHHHHHHHHCCEEEeCccccCCCCCeEEEEec-cCCHHHHHHHHHHHHHHHH
Confidence 8776420 00 0 023446677788999999863 578999965 3488999999999999887
No 174
>1ibj_A CBL, cystathionine beta-lyase; PLP-dependent enzyme, methionine biosynthesis, transsulfurat lyase; HET: PLP; 2.30A {Arabidopsis thaliana} SCOP: c.67.1.3
Probab=99.92 E-value=3.2e-25 Score=211.83 Aligned_cols=289 Identities=11% Similarity=0.096 Sum_probs=194.0
Q ss_pred CCCCCcHHHHHHHHhcccCCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccCCccc
Q 017259 17 AFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEA 96 (374)
Q Consensus 17 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~ 96 (374)
.+..+.++++++++++++|.+++++++||++|+..++. + .++| |+|++..++|++...........
T Consensus 129 ~~g~~~~~~l~~~la~~~g~~~~i~~~sGt~al~~~l~-~-----~~~G-----d~Vi~~~~~y~~~~~~~~~~~~~--- 194 (464)
T 1ibj_A 129 RSGNPTRDALESLLAKLDKADRAFCFTSGMAALSAVTH-L-----IKNG-----EEIVAGDDVYGGSDRLLSQVVPR--- 194 (464)
T ss_dssp TTCCHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHT-T-----SCTT-----CEEEEESSCCHHHHHHHHHTSGG---
T ss_pred CCCCHHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHH-H-----hCCC-----CEEEEECCCchhHHHHHHHHHHH---
Confidence 44566788899999999999999999999999887764 2 5677 99999999998764321111000
Q ss_pred cccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEeccccCCcc
Q 017259 97 IRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLAR 176 (374)
Q Consensus 97 ~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~~~~~ 176 (374)
....+..++.+|+++++++++ ++++++++++++|++|.+.+ +++|.++|++||+++|+||+|+.. .
T Consensus 195 ------~G~~v~~v~~~d~~~l~~~i~---~~tk~v~l~~p~NptG~v~~----l~~i~~la~~~gi~livDea~~~g-~ 260 (464)
T 1ibj_A 195 ------SGVVVKRVNTTKLDEVAAAIG---PQTKLVWLESPTNPRQQISD----IRKISEMAHAQGALVLVDNSIMSP-V 260 (464)
T ss_dssp ------GTCEEEEECTTSHHHHHHHCC---SSEEEEEECSSCTTTCCCCC----HHHHHHHHHTTTCEEEEECTTTCT-T
T ss_pred ------cCCEEEEeCCCCHHHHHHHhc---cCceEEEEeCCCCCCCEeec----HHHHHHHHHHcCCEEEEECCCccc-c
Confidence 012345556668999999886 57999999999999999997 999999999999999999999732 1
Q ss_pred cccCcccccCCCCCcEE--EecccccC--CccchhhheeCH-HHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHhhhcHH
Q 017259 177 SGRMLASDWEEVRPDMV--ILGKALGG--GVIPVSAVLADK-EVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRDEKLA 251 (374)
Q Consensus 177 ~g~~~~~~~~~~~~d~~--s~sK~~~~--G~~~~G~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~aa~~al~~~~~~~~~ 251 (374)
... ... ...|++ |+||.+++ |+ ++|++++++ ++.+.+........+..+++.+.++.++++.+.. ..
T Consensus 261 ~~~--~~~---~~~div~~S~sK~~~g~~Gl-~~G~l~~~~~~l~~~l~~~~~~~g~~~~~~~~~a~~~al~~~~~--r~ 332 (464)
T 1ibj_A 261 LSR--PLE---LGADIVMHSATKFIAGHSDV-MAGVLAVKGEKLAKEVYFLQNSEGSGLAPFDCWLCLRGIKTMAL--RI 332 (464)
T ss_dssp TCC--GGG---TTCSEEEEETTTTTTCSSCC-CCEEEEECSHHHHHHHHHHHHHTTCBCCHHHHHHHHHHHTTHHH--HH
T ss_pred cCC--hhh---cCCEEEEECCcccccCCCCC-cEEEEEEChHHHHHHHHHHHHhcCCCCCHHHHHHHHhchhhHHH--HH
Confidence 111 111 235655 78899985 77 899999884 7777665432223345578888777777653211 12
Q ss_pred HHHHHHHHHHHHHHHHHH----------HhCCCce---eeEEEEeeeEEEEeccCCCchhHHHHHHHHHHCCeEeccCC-
Q 017259 252 ERSAHLGEELRQHLFKIQ----------QQFPNYV---KEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTH- 317 (374)
Q Consensus 252 ~~~~~~~~~~~~~l~~~~----------~~~~~~~---~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~- 317 (374)
++...+...+.+.+++.. ..+|++. ....+.+.+++|.+++. .....+.+.|...||.++.+.
T Consensus 333 ~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~~g~g~~~~~~l~~~---~~~~~~~~~L~~~gi~v~~G~~ 409 (464)
T 1ibj_A 333 EKQQENARKIAMYLSSHPRVKKVYYAGLPDHPGHHLHFSQAKGAGSVFSFITGSV---ALSKHLVETTKYFSIAVSFGSV 409 (464)
T ss_dssp HHHHHHHHHHHHHHHTCTTCCEEECTTSTTSTTHHHHTTTCSCCCSEEEEECSCH---HHHHHHHHHCSSSEECSCCCSS
T ss_pred HHHHHHHHHHHHHHHhCCCceEEECCCCCCCcchHHHhccCCCCceEEEEEECCH---HHHHHHHHhcCcceEeecCCCC
Confidence 222333333333333210 0111110 01123567888887421 124468888776777665442
Q ss_pred --------------------------CCEEEEecCCCCCHHHHHHHHHHHHHHHhccC
Q 017259 318 --------------------------DTIVRLTPPLSISSNELQEGSKALHDVLELDL 349 (374)
Q Consensus 318 --------------------------~~~lRi~~~~~~~~e~i~~~~~~l~~~~~~~~ 349 (374)
.+++|++++. |++++++++|+++++ .+
T Consensus 410 ~sl~~~p~~~~~~~~~~~~~~~~g~~~~~iRlsvg~----edi~~li~~L~~al~-~~ 462 (464)
T 1ibj_A 410 KSLISMPCFMSHASIPAEVREARGLTEDLVRISAGI----EDVDDLISDLDIAFK-TF 462 (464)
T ss_dssp SCEEECTTTTTTCSCCSSSSSSSSCCTTCEEEECCS----SCHHHHHHHHHHHHH-SC
T ss_pred ceeeecccccccccCCHHHHHhcCCCcCeEEEEeCC----CCHHHHHHHHHHHHh-hc
Confidence 4689999775 799999999999998 54
No 175
>2dkj_A Serine hydroxymethyltransferase; PLP dependent enzyme, structural genomics; HET: PLP; 1.15A {Thermus thermophilus}
Probab=99.92 E-value=4.1e-24 Score=201.39 Aligned_cols=287 Identities=13% Similarity=0.130 Sum_probs=192.0
Q ss_pred HHHhcccCCCeE-EecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCccc--ccccccCCccccccCCCCC
Q 017259 28 ERLTSMFGYDMV-LPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTL--AAISMSCDNEAIRGFGPLL 104 (374)
Q Consensus 28 ~~l~~~~~~~~~-~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~--~~~~~~~~~~~~~~~~~~~ 104 (374)
+++++++|.+.. ++++||++|++.+++++ ..+| ++|++.+++|++... ......+.......+ +..
T Consensus 76 ~~la~~~g~~~~~i~~~sGt~a~~~~~~~~-----~~~g-----d~Vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~ 144 (407)
T 2dkj_A 76 ERAKALFGAAWANVQPHSGSQANMAVYMAL-----MEPG-----DTLMGMDLAAGGHLTHGSRVNFSGKLYKVVSY-GVR 144 (407)
T ss_dssp HHHHHHHTCSEEECCCSSHHHHHHHHHHHH-----CCTT-----CEEEEECGGGTCCGGGTCTTSHHHHHSEEEEE-CCC
T ss_pred HHHHHHhCCCcceEEecchHHHHHHHHHHh-----cCCC-----CEEEEecccccCccchHHHHHhcCceEEEEec-CCC
Confidence 488888887755 66778899999999988 4567 999999999977631 211111110000000 000
Q ss_pred CCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEeccccC-CcccccCccc
Q 017259 105 PGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSG-LARSGRMLAS 183 (374)
Q Consensus 105 ~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~~-~~~~g~~~~~ 183 (374)
.+ ....|++++++++++. ++++++++.+++ |...+ +++|.++|++||+++|+||+|++ +...+....
T Consensus 145 ~~---~~~~d~~~l~~~l~~~--~~~~v~~~~p~~--~~~~~----l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~- 212 (407)
T 2dkj_A 145 PD---TELIDLEEVRRLALEH--RPKVIVAGASAY--PRFWD----FKAFREIADEVGAYLVVDMAHFAGLVAAGLHPN- 212 (407)
T ss_dssp TT---TSSCCHHHHHHHHHHH--CCSEEEECCSSC--CSCCC----HHHHHHHHHHHTCEEEEECTTTHHHHHTTCSCC-
T ss_pred cc---cCccCHHHHHHHHhhc--CCeEEEEecccc--CCCCC----HHHHHHHHHHcCCEEEEEccccccccccCccCC-
Confidence 00 0113799999999743 567777743333 25555 99999999999999999999984 433332211
Q ss_pred ccCCCCCcEE--EecccccCCccchhhheeC-HHHHhhcCCCC-CCCCCCCCHHHHHHHHHHHHHHhh---hcHHHHHHH
Q 017259 184 DWEEVRPDMV--ILGKALGGGVIPVSAVLAD-KEVMLCIQPGE-HGSTFGGNPLASAVAIASLDVIRD---EKLAERSAH 256 (374)
Q Consensus 184 ~~~~~~~d~~--s~sK~~~~G~~~~G~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~aa~~al~~~~~---~~~~~~~~~ 256 (374)
... .+|++ |+||+++ |. ++|+++++ +++.+.+.... .+.+.+.+...++++.++++.+.. +++.+++++
T Consensus 213 -~~~-~~di~~~s~sK~l~-g~-~~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~ 288 (407)
T 2dkj_A 213 -PLP-YAHVVTSTTHKTLR-GP-RGGLILSNDPELGKRIDKLIFPGIQGGPLEHVIAGKAVAFFEALQPEFKEYSRLVVE 288 (407)
T ss_dssp -CTT-TCSEEEEESSGGGC-CC-SCEEEEESCHHHHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHH
T ss_pred -ccc-cccEEEEeccccCC-CC-CceEEEECCHHHHHHHHhhhcccccCCCcHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 111 25666 8899887 45 67999998 78877765432 233344566666677777776533 356677777
Q ss_pred HHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCchhHHHHHHHHHHCCeEeccCC----------CCEEEEecC
Q 017259 257 LGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTH----------DTIVRLTPP 326 (374)
Q Consensus 257 ~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~----------~~~lRi~~~ 326 (374)
+.+++.+.|++.. + .+... ++.+.++++.++... .+..++.+.|.++||.++++. ++++|++++
T Consensus 289 ~~~~l~~~L~~~g--~-~~~~~-~~~~~~~~~~~~~~~--~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~~~~iRis~~ 362 (407)
T 2dkj_A 289 NAKRLAEELARRG--Y-RIVTG-GTDNHLFLVDLRPKG--LTGKEAEERLDAVGITVNKNAIPFDPKPPRVTSGIRIGTP 362 (407)
T ss_dssp HHHHHHHHHHHTT--C-EEGGG-SCSSSEEEEECGGGT--CCHHHHHHHHHHTTEECEECCCTTCSSCTTTCSEEEEECH
T ss_pred HHHHHHHHHHhCC--c-eeecC-CCCceEEEEECcccC--CCHHHHHHHHHHcCceecCCcCccccccccCCCceeeecc
Confidence 7788877777651 2 11111 245788888886410 157789999999999998742 578999976
Q ss_pred C----CCCHHHHHHHHHHHHHHHhcc
Q 017259 327 L----SISSNELQEGSKALHDVLELD 348 (374)
Q Consensus 327 ~----~~~~e~i~~~~~~l~~~~~~~ 348 (374)
. ..+++++++++++|+++++ +
T Consensus 363 ~~~~~~~~~~~i~~~~~~l~~~~~-~ 387 (407)
T 2dkj_A 363 AITTRGFTPEEMPLVAELIDRALL-E 387 (407)
T ss_dssp HHHHTTCCGGGHHHHHHHHHHHHH-H
T ss_pred cccccCCCHHHHHHHHHHHHHHHh-c
Confidence 5 3799999999999999998 5
No 176
>1qgn_A Protein (cystathionine gamma-synthase); methionine biosynthesis, pyridoxal 5'-phosphate, gamma-famil; HET: PLP; 2.90A {Nicotiana tabacum} SCOP: c.67.1.3 PDB: 1i41_A* 1i48_A* 1i43_A*
Probab=99.92 E-value=3.3e-24 Score=203.42 Aligned_cols=291 Identities=16% Similarity=0.159 Sum_probs=195.5
Q ss_pred cccCcCCCCCcHHHHHHHHhcccCCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCccccccccc
Q 017259 12 TLSSRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMS 91 (374)
Q Consensus 12 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~ 91 (374)
.+.++.+.++..++++++|++++|.+..++++||++|++.+++.+ .++| |+|++.++.|++.........
T Consensus 105 ~~~y~r~~~~~~~~l~~~lA~l~g~~~~v~~~sG~~Ai~~al~~l-----~~~G-----d~Vi~~~~~y~~~~~~~~~~~ 174 (445)
T 1qgn_A 105 SFEYGRYGNPTTVVLEEKISALEGAESTLLMASGMCASTVMLLAL-----VPAG-----GHIVTTTDCYRKTRIFIETIL 174 (445)
T ss_dssp CCCBGGGCCHHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHH-----SCSS-----CEEEEETTSCHHHHHHHHHTG
T ss_pred CccccCCCChHHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHH-----hCCC-----CEEEEcCCCchhHHHHHHHHH
Confidence 344555678889999999999998888888889999999999977 4567 999999999876443211000
Q ss_pred CCccccccCCCCCCCceeccCCCHHHHHHHHHhcCCcE-EEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEecc
Q 017259 92 CDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQI-AGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEI 170 (374)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~-~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea 170 (374)
.. ....+..++.+|+++++++++. ++ +++++++++|++|.+.+ +++|.++|++||+++|+|++
T Consensus 175 ~~---------~G~~v~~v~~~d~~~l~~ai~~---~tv~lV~le~p~NptG~v~d----l~~I~~la~~~g~~livD~a 238 (445)
T 1qgn_A 175 PK---------MGITATVIDPADVGALELALNQ---KKVNLFFTESPTNPFLRCVD----IELVSKLCHEKGALVCIDGT 238 (445)
T ss_dssp GG---------GTCEEEEECSSCHHHHHHHHHH---SCEEEEEEESSCTTTCCCCC----HHHHHHHHHHTTCEEEEECT
T ss_pred HH---------cCCEEEEeCCCCHHHHHHHhcc---CCCCEEEEeCCCCCCCcccC----HHHHHHHHHHcCCEEEEECC
Confidence 00 1133555666799999999983 56 99999999999999998 99999999999999999999
Q ss_pred ccCCcccccCcccccCCCCCcEE--EecccccC-CccchhhheeCHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHhh
Q 017259 171 QSGLARSGRMLASDWEEVRPDMV--ILGKALGG-GVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRD 247 (374)
Q Consensus 171 ~~~~~~~g~~~~~~~~~~~~d~~--s~sK~~~~-G~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~al~~~~~ 247 (374)
|+.... . ......+|++ |++|.++| |.+++|++++++++++.+...........+++.+..+..+++.+.
T Consensus 239 ~~~~~~-~-----~~~~~g~Div~~S~sK~~gg~gd~~~G~l~~~~~l~~~l~~~~~~~g~~~~~~~a~~~~~~l~~l~- 311 (445)
T 1qgn_A 239 FATPLN-Q-----KALALGADLVLHSATKFLGGHNDVLAGCISGPLKLVSEIRNLHHILGGALNPNAAYLIIRGMKTLH- 311 (445)
T ss_dssp TTCTTT-C-----CTTTTTCSEEEECTTTTTTCSSSCCCEEEEECHHHHHHHHHHHHHHCCCCCHHHHHHHHHHGGGHH-
T ss_pred Cccccc-C-----CccccCCEEEEECCcccccccccceEEEEEECHHHHHHHHHHHHHhCCCCCHHHHHHHHHhHHHHH-
Confidence 973311 1 1223456776 57799985 423689999998888777542211122345665555555554332
Q ss_pred hcHHHHHHHHHHHHHHHHHHHHHhCCCceee-----------------EEEEeeeEEEEeccCCCchhHHHHHHHHHHCC
Q 017259 248 EKLAERSAHLGEELRQHLFKIQQQFPNYVKE-----------------VRGRGLFNAVEFDKTALPVSAYDICLKMKERG 310 (374)
Q Consensus 248 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-----------------~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~G 310 (374)
...++..++.+++.+.|++. |.+... .++.+.+++|.++... .....+.+.|...+
T Consensus 312 -~r~~~~~~~a~~l~~~L~~~----p~v~~v~~p~l~~~p~~~~~~~~~~g~g~ivsf~l~~~~--~~~~~~l~~l~~~~ 384 (445)
T 1qgn_A 312 -LRVQQQNSTALRMAEILEAH----PKVRHVYYPGLQSHPEHHIAKKQMTGFGGAVSFEVDGDL--LTTAKFVDALKIPY 384 (445)
T ss_dssp -HHHHHHHHHHHHHHHHHHTC----TTEEEEECTTSSSSTTHHHHHHHCSCCCSEEEEEESSCH--HHHHHHHHHCSSSE
T ss_pred -HHHHHHHHHHHHHHHHHhcC----CCceEEECCCCCCCchHHHHHHhccCCCcEEEEEECCCH--HHHHHHHHhCCCce
Confidence 12344445566666666543 211010 1236788899886531 13455666654334
Q ss_pred eEeccC---------------------------CCCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 017259 311 ILAKPT---------------------------HDTIVRLTPPLSISSNELQEGSKALHDVLE 346 (374)
Q Consensus 311 i~v~~~---------------------------~~~~lRi~~~~~~~~e~i~~~~~~l~~~~~ 346 (374)
+.++.+ ..+.+|++++ .||++.+++.|+++++
T Consensus 385 i~~s~G~~~sl~~~p~~~~h~~~~~~~~~~~g~~~~~iRlSvG----~Edid~li~~L~~al~ 443 (445)
T 1qgn_A 385 IAPSFGGCESIVDQPAIMSYWDLSQSDRAKYGIMDNLVRFSFG----VEDFDDLKADILQALD 443 (445)
T ss_dssp ECSCCCSSSCEEECHHHHHSTTSCHHHHHTTTCCSSEEEEECC----SSCHHHHHHHHHHHHH
T ss_pred EeccCCCCceeeecccccccccCCHHHHHhcCCCCCeEEEEec----cCCHHHHHHHHHHHHh
Confidence 432211 1479999955 4689999999999886
No 177
>3a9z_A Selenocysteine lyase; PLP, cytoplasm, pyridoxal phosphate, transferase; HET: PLP SLP; 1.55A {Rattus norvegicus} PDB: 3a9x_A* 3a9y_A* 3gzd_A* 3gzc_A* 2hdy_A*
Probab=99.92 E-value=7.6e-24 Score=201.30 Aligned_cols=301 Identities=13% Similarity=0.069 Sum_probs=184.7
Q ss_pred cHHHHHHHHhcccCC--CeEEecCChHHHHHHHHHHHHHcccc---cccCCCCccEEEEeccCCCCcccccccccCCccc
Q 017259 22 KFPVFAERLTSMFGY--DMVLPMNTGAEGVETALKLARKWGYV---KKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEA 96 (374)
Q Consensus 22 ~~~~l~~~l~~~~~~--~~~~~~~~gs~a~~~al~~~~~~~~~---~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~ 96 (374)
...++++++++++|. +++++++|+++|++.+++.+...... ++| |+|++..|+|+++..........+..
T Consensus 62 ~~~~l~~~la~~~g~~~~~v~~~~g~t~a~~~~~~~~~~~~~~~~~~~g-----d~vl~~~p~y~~~~~i~~~~~~h~s~ 136 (432)
T 3a9z_A 62 IINTARASLAKMIGGKPQDIIFTSGGTESNNLVIHSTVRCFHEQQTLQG-----RTVDQISPEEGTRPHFITCTVEHDSI 136 (432)
T ss_dssp HHHHHHHHHHHHHTCCGGGEEEESCHHHHHHHHHHHHHHHHHHHHHHC-----------------CCCEEEEETTCCHHH
T ss_pred HHHHHHHHHHHHcCCCcCeEEEeCChHHHHHHHHHHHHhhhhhccccCC-----ccccccccccccCCeEEEecCcchhH
Confidence 356899999998875 48999999999999999988421000 356 99999999998752111111000000
Q ss_pred cccC----CCCCCCceeccC------CCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcC----
Q 017259 97 IRGF----GPLLPGHLKVDF------GDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYN---- 162 (374)
Q Consensus 97 ~~~~----~~~~~~~~~~~~------~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~---- 162 (374)
...+ ......+..++. .|+++|+++++ ++++++++++++|++|.+.+ +++|.++|+++|
T Consensus 137 ~~~~~~~~~~~g~~v~~v~~~~~~~~~d~~~l~~~i~---~~~~~v~~~~~~nptG~~~~----~~~i~~l~~~~~~~~~ 209 (432)
T 3a9z_A 137 RLPLEHLVEDQVAEVTFVPVSKVNGQVEVEDILAAVR---PTTCLVTIMLANNETGVIMP----ISEISRRIKALNQIRA 209 (432)
T ss_dssp HHHHHHHHHTTSCEEEEECCCTTTSSCCHHHHHHTCC---TTEEEEECCSBCTTTCBBCC----HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCcEEEEEecCcccCCcCHHHHHHhcc---CCceEEEEECcccCcccccC----HHHHHHHHHhcCcccc
Confidence 0000 000011222222 27889988876 57999999999999999998 999999999999
Q ss_pred ------CEEEEeccccCCcccccCcccccCCCCCcEE--EecccccCCccchhhheeCHHH-HhhcCCCC-------CCC
Q 017259 163 ------ILMIADEIQSGLARSGRMLASDWEEVRPDMV--ILGKALGGGVIPVSAVLADKEV-MLCIQPGE-------HGS 226 (374)
Q Consensus 163 ------i~li~Dea~~~~~~~g~~~~~~~~~~~~d~~--s~sK~~~~G~~~~G~~~~~~~~-~~~~~~~~-------~~~ 226 (374)
++||+||+|+.. .. .+... ...+|++ |++|.+ |. ++|++++++++ ...+.+.. ...
T Consensus 210 ~~~~~~~~livDea~~~~-~~--~~~~~--~~~~d~~~~s~~K~~--g~-~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (432)
T 3a9z_A 210 ASGLPRVLVHTDAAQALG-KR--RVDVE--DLGVDFLTIVGHKFY--GP-RIGALYVRGVGKLTPLYPMLFGGGQERNFR 281 (432)
T ss_dssp HHTCCCCEEEEECTTTTT-TS--CCCHH--HHCCSEEEEEGGGTT--CC-SCEEEEETTBTTTBCCCCSCCSSCGGGGTS
T ss_pred cccCCceEEEEEchhhhC-Cc--ccChh--hcCCCEEEEehhHhc--CC-cceEEEEccccccCCcCceeecCCcccccc
Confidence 999999999632 21 11111 1245655 668976 36 78999988765 33444321 122
Q ss_pred CCCCCHHHHHHHHHHHHHHhh--hcHHHHHHHHHHHHHHHHHHHHHhCCCce--ee---EEEEeeeEEEEeccCCCchhH
Q 017259 227 TFGGNPLASAVAIASLDVIRD--EKLAERSAHLGEELRQHLFKIQQQFPNYV--KE---VRGRGLFNAVEFDKTALPVSA 299 (374)
Q Consensus 227 ~~~~~~~~~~aa~~al~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~~---~~~~g~~~~~~~~~~~~~~~~ 299 (374)
.++.+.++++++.++++.+.+ +++.++++++++++.+.|+++... .+. .. ....+.+++|.+++.. .+.
T Consensus 282 ~~~~~~~~~~a~~aal~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~--~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 357 (432)
T 3a9z_A 282 PGTENTPMIAGLGKAADLVSENCETYEAHMRDIRDYLEERLEAEFGK--RIHLNSRFPGVERLPNTCNFSIQGSQ--LRG 357 (432)
T ss_dssp CSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGG--GEEESSCCTTCCBCTTEEEEEECSTT--CCH
T ss_pred CCCcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhccCC--cEEEeCCCCcccCCCCEEEEEeCCCC--CcH
Confidence 356688888888888887654 356777888888888888775321 011 00 1123456667675421 034
Q ss_pred HHHHHHHHHCCeEeccC------------------------CCCEEEEecCCCCCHHHHHHHHHHHHHHHhccC
Q 017259 300 YDICLKMKERGILAKPT------------------------HDTIVRLTPPLSISSNELQEGSKALHDVLELDL 349 (374)
Q Consensus 300 ~~~~~~l~~~Gi~v~~~------------------------~~~~lRi~~~~~~~~e~i~~~~~~l~~~~~~~~ 349 (374)
.++.+.+ .|+.++.+ ..+++||+++..++++|+++++++|+++++ ++
T Consensus 358 ~~~~~~l--~~i~~~~G~~~~~~~~~~~~~~l~~~g~~~~~~~~~iRis~~~~~t~eei~~~~~~l~~~~~-~~ 428 (432)
T 3a9z_A 358 YMVLAQC--QTLLASVGASCHSDHEDRPSPVLLSCGIPVDVARNAVRLSVGRSTTRAEVDLIVQDLKQAVN-QL 428 (432)
T ss_dssp HHHHHHC--SSEECBSSCGGGGGGTTSCCHHHHHTTCCHHHHTTEEEEECCTTCCHHHHHHHHHHHHHHHH-HH
T ss_pred HHHHHHh--cCeEEeccccccCCCCCCccHHHHhcCCCccccCceEEEEcCCCCCHHHHHHHHHHHHHHHH-Hh
Confidence 5566554 24443321 137999999988899999999999999987 54
No 178
>3acz_A Methionine gamma-lyase; L-methionine; HET: LLP; 1.97A {Entamoeba histolytica} PDB: 3aej_A* 3ael_A* 3aem_A* 3aen_A* 3aeo_A* 3aep_A*
Probab=99.92 E-value=2.9e-24 Score=201.40 Aligned_cols=289 Identities=13% Similarity=0.115 Sum_probs=196.2
Q ss_pred ccCcCCCCCcHHHHHHHHhcccCCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccC
Q 017259 13 LSSRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSC 92 (374)
Q Consensus 13 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~ 92 (374)
+.++.++++...+++++|++++|.+++++++||++|++.+++.+ .++| |+|++..++|++..........
T Consensus 51 ~~y~~~~~~~~~~l~~~la~~~g~~~~i~~~sG~~ai~~~~~~~-----~~~g-----d~vl~~~~~y~~~~~~~~~~~~ 120 (389)
T 3acz_A 51 HIYSRLGNPTVEQFEEMVCSIEGAAGSAAFGSGMGAISSSTLAF-----LQKG-----DHLIAGDTLYGCTVSLFTHWLP 120 (389)
T ss_dssp CCBTTTCCHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHTTT-----CCTT-----CEEEEESSCCHHHHHHHHHHHH
T ss_pred cccCCCCChHHHHHHHHHHHHhCCCeEEEeCCHHHHHHHHHHHH-----hCCC-----CEEEEeCCCchHHHHHHHHHHH
Confidence 44455678889999999999999889999999999999998876 4567 9999999999875443211000
Q ss_pred CccccccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEecccc
Q 017259 93 DNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQS 172 (374)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~ 172 (374)
. ....+..++..|+++++++++ ++++++++++++|++|.+.+ +++|.++|++||+++|+||+|+
T Consensus 121 ~---------~g~~~~~v~~~d~~~l~~~i~---~~~~~v~~~~~~nptG~~~~----l~~i~~~~~~~~~~livD~~~~ 184 (389)
T 3acz_A 121 R---------FGIEVDLIDTSDVEKVKAAWK---PNTKMVYLESPANPTCKVSD----IKGIAVVCHERGARLVVDATFT 184 (389)
T ss_dssp H---------TTCEEEEECTTCHHHHHHTCC---TTEEEEEEESSCTTTCCCCC----HHHHHHHHHHHTCEEEEECTTT
T ss_pred H---------cCCEEEEECCCCHHHHHHhcC---CCCeEEEEECCCCCCCeecC----HHHHHHHHHHcCCEEEEECCCc
Confidence 0 012345556678999998887 57999999999999999998 9999999999999999999998
Q ss_pred CCcccccCcccccCCCCCcEE--EecccccC-Cccch-hhheeCH-HHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHhh
Q 017259 173 GLARSGRMLASDWEEVRPDMV--ILGKALGG-GVIPV-SAVLADK-EVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRD 247 (374)
Q Consensus 173 ~~~~~g~~~~~~~~~~~~d~~--s~sK~~~~-G~~~~-G~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~aa~~al~~~~~ 247 (374)
++.. +.++ +..+|++ |++|.+++ |. |+ |++++++ ++.+.+...........+++.+.++.+.++.+.
T Consensus 185 ~~~~-~~~~-----~~~~di~~~S~sK~~~~~~~-~~~G~v~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~l~~l~- 256 (389)
T 3acz_A 185 SPCF-LKPL-----ELGADIALHSVSKYINGHGD-VIGGVSSAKTAEDIATIKFYRKDAGSLMAPMDAFLCARGMKTLP- 256 (389)
T ss_dssp CTTT-CCGG-----GTTCSEEEEETTTTTTCSSC-CCCEEEEESSHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHTTHH-
T ss_pred cccc-cCcc-----ccCCeEEEECChhhccCCCC-ceeEEEEECcHHHHHHHHHHHHhcCCCCCHHHHHHHHcCccHHH-
Confidence 5421 2221 2346766 78899996 56 87 8898888 887777643221233456777776766665431
Q ss_pred hcHHHHHHHHHHHHHHHHHHHHH----hCCCc-----e----eeEEEEeeeEEEEeccCCCchhHHHHHHHHHHCCeEec
Q 017259 248 EKLAERSAHLGEELRQHLFKIQQ----QFPNY-----V----KEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAK 314 (374)
Q Consensus 248 ~~~~~~~~~~~~~~~~~l~~~~~----~~~~~-----~----~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~ 314 (374)
...++..++...+.+.+++... .+|.. . ...++.+.++.|.++. ..++.+.|.+.|+.+.
T Consensus 257 -~r~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~~~~~~~~~~~~g~g~~~~~~l~~------~~~~~~~l~~~~i~~~ 329 (389)
T 3acz_A 257 -IRMQIHMENGLKVAKFLEQHEKIVKVNHPGLESFPGHDIAKKQMTGYGSTFLFEMKS------FEAAKKLMEHLKVCTL 329 (389)
T ss_dssp -HHHHHHHHHHHHHHHHHHHCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEESS------HHHHHHHHTTCSSSEE
T ss_pred -HHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCCeEEEEEECC------HHHHHHHHHhCCCcEE
Confidence 2344555566666666655310 00000 0 0012347778887752 3456666667787664
Q ss_pred cC------------------------------CCCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 017259 315 PT------------------------------HDTIVRLTPPLSISSNELQEGSKALHDVLE 346 (374)
Q Consensus 315 ~~------------------------------~~~~lRi~~~~~~~~e~i~~~~~~l~~~~~ 346 (374)
.. .++.+|++++.. +.+++++.|.++++
T Consensus 330 ~~s~G~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRlsvg~~----~~~~li~~l~~al~ 387 (389)
T 3acz_A 330 AVSLGCVDTLIEHPASMTHAAVPENIMRKQGITPELVRISVGIE----NVDDIIADLKQALE 387 (389)
T ss_dssp BSCCCCSSCEEECTTTTTTSSSCHHHHHHHTCCTTEEEEECCSS----CHHHHHHHHHHHHT
T ss_pred CcCCCCcccEeeCCcccccccCCHHHHHhcCCCcCeEEEEeccC----CHHHHHHHHHHHHh
Confidence 41 147999997765 45555666666655
No 179
>1wyu_B Glycine dehydrogenase subunit 2 (P-protein); alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_B* 1wyv_B*
Probab=99.92 E-value=1.1e-23 Score=202.40 Aligned_cols=292 Identities=17% Similarity=0.162 Sum_probs=198.1
Q ss_pred cHHHHHHHHhcccCCCeE-EecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccCCccccccC
Q 017259 22 KFPVFAERLTSMFGYDMV-LPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGF 100 (374)
Q Consensus 22 ~~~~l~~~l~~~~~~~~~-~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~ 100 (374)
...++++++++++|.+.. ++++||++|+..++++++.+. .++|...++++|+++.+.| +.+.......+-
T Consensus 108 l~~~l~~~la~~~g~~~~~~~~~ggt~a~~~al~~~~~~~-~~~Gd~~~r~~Vlv~~~~h-~~~~~~~~~~G~------- 178 (474)
T 1wyu_B 108 LMWELGEYLKALTGMDAITLEPAAGAHGELTGILIIRAYH-EDRGEGRTRRVVLVPDSAH-GSNPATASMAGY------- 178 (474)
T ss_dssp HHHHHHHHHHHHHTCSEEECCCSSHHHHHHHHHHHHHHHH-HHTTCTTTCCEEEEETTSC-THHHHHHHHTTC-------
T ss_pred HHHHHHHHHHHHHCCCceeecChHHHHHHHHHHHHHHHHH-HhcCCccCCCEEEEeCCcC-hhhHHHHHHCCC-------
Confidence 467789999998888754 578999999999988886542 3455102335899988775 554444333321
Q ss_pred CCCCCCceeccCC-----CHHHHHHHHHhcCCcEEEEEEccccCCCCcc-cCChhHHHHHHHHHHhcCCEEEEeccccCC
Q 017259 101 GPLLPGHLKVDFG-----DITALEKIFKESGDQIAGFLFEPIQGEAGVI-IPPDGYLKAVRDLCSKYNILMIADEIQSGL 174 (374)
Q Consensus 101 ~~~~~~~~~~~~~-----d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~-~~~~~~l~~l~~l~~~~~i~li~Dea~~~~ 174 (374)
.+..++.+ |+++|+++++ +++++++++++ |++|.+ .+ +++|.++|++||+++|+||+|+..
T Consensus 179 -----~vv~v~~~~~~~~d~~~L~~~i~---~~t~~v~~~~p-n~~G~~~~~----l~~i~~l~~~~g~~li~Dea~~~~ 245 (474)
T 1wyu_B 179 -----QVREIPSGPEGEVDLEALKRELG---PHVAALMLTNP-NTLGLFERR----ILEISRLCKEAGVQLYYDGANLNA 245 (474)
T ss_dssp -----EEEEECBCTTSSBCHHHHHHHCS---TTEEEEEECSS-CTTSCCCTT----HHHHHHHHHHHTCEEEEEGGGGGG
T ss_pred -----EEEEecCCCCCCcCHHHHHHhhC---CCceEEEEECC-CCCcccCCC----HHHHHHHHHHcCCEEEEeCchhhh
Confidence 12222222 8999999886 57899999885 568876 45 999999999999999999999743
Q ss_pred cccccCcccccCCCCCcEEEe--cccccC-----CccchhhheeCHHHHhhcCCC-------------------CCCCCC
Q 017259 175 ARSGRMLASDWEEVRPDMVIL--GKALGG-----GVIPVSAVLADKEVMLCIQPG-------------------EHGSTF 228 (374)
Q Consensus 175 ~~~g~~~~~~~~~~~~d~~s~--sK~~~~-----G~~~~G~~~~~~~~~~~~~~~-------------------~~~~~~ 228 (374)
. .|.. .... ..+|++++ +|++++ |. ++|++++++++++.+... ....++
T Consensus 246 ~-~g~~-~~~~--~g~di~~~s~~K~~~~p~g~gG~-~~G~~~~~~~l~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 320 (474)
T 1wyu_B 246 I-MGWA-RPGD--MGFDVVHLNLHKTFTVPHGGGGP-GSGPVGVKAHLAPYLPVPLVERGEEGFYLDFDRPKSIGRVRSF 320 (474)
T ss_dssp T-TTTC-CHHH--HTCSEEECCTTTTTCCCCTTSCC-CCCCEEECGGGGGGCCSCEEEECSSCEEEECCCTTCCCCSSST
T ss_pred h-ccCC-Cccc--CCCcEEEEeCccccccCCCCCCC-CeEEEEEcHHHHHhCCCCeeeccCCeeEecccCcccCcccccC
Confidence 2 2211 1111 24677755 798862 46 899999999887776520 011233
Q ss_pred CCCHHHHHHHHHHHHHHhhhcH---HHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCchhHHHHHHH
Q 017259 229 GGNPLASAVAIASLDVIRDEKL---AERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLK 305 (374)
Q Consensus 229 ~~~~~~~~aa~~al~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 305 (374)
+.+.+++.++.+.++.+..+.+ .++.+++.+++.+.|++. .+ .+... ......+++.++... +..++.+.
T Consensus 321 ~~~~~~~~aa~~~l~~~g~~~l~~~~~~~~~~~~~l~~~L~~~--g~-~~~~~-~~~~~~~~~~~~~~~---~~~~l~~~ 393 (474)
T 1wyu_B 321 YGNFLALVRAWAYIRTLGLEGLKKAAALAVLNARYLKELLKEK--GY-RVPYD-GPSMHEFVAQPPEGF---RALDLAKG 393 (474)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT--TC-BCSSC-SSCCSCEEEBCSTTC---CHHHHHHH
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--Cc-EecCC-CCcceEEEEEcCCCC---CHHHHHHH
Confidence 5678888888888876544433 667777888888888765 22 12111 011111444443222 67899999
Q ss_pred HHHCCeEeccC-----CCCEEEEecCCCCCHHHHHHHHHHHHHHHhcc
Q 017259 306 MKERGILAKPT-----HDTIVRLTPPLSISSNELQEGSKALHDVLELD 348 (374)
Q Consensus 306 l~~~Gi~v~~~-----~~~~lRi~~~~~~~~e~i~~~~~~l~~~~~~~ 348 (374)
|.++||.+... ..+++||+++...+++++++++++|+++++ +
T Consensus 394 L~~~Gi~~~~~~~~~~~~~~lRis~~~~~t~e~id~~~~~L~~~~~-~ 440 (474)
T 1wyu_B 394 LLELGFHPPTVYFPLIVKEALMVEPTETEAKETLEAFAEAMGALLK-K 440 (474)
T ss_dssp HHHTTCCCCEESCSTTSTTCEEECCCTTSCHHHHHHHHHHHHHHHT-S
T ss_pred HHHCCccccccccccccCCEEEEEeecCCCHHHHHHHHHHHHHHHH-h
Confidence 99999986321 257899999888899999999999999998 5
No 180
>1n8p_A Cystathionine gamma-lyase; three open alpha/beta structures; HET: PLP; 2.60A {Saccharomyces cerevisiae} SCOP: c.67.1.3
Probab=99.92 E-value=1.7e-24 Score=203.14 Aligned_cols=294 Identities=14% Similarity=0.127 Sum_probs=194.7
Q ss_pred ccCcCCCCCcHHHHHHHHhcccCCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccC
Q 017259 13 LSSRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSC 92 (374)
Q Consensus 13 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~ 92 (374)
+..+.+..+..++++++++++++.+++++++||++|++.+++ + .++| |+|++..+.|++..........
T Consensus 47 ~~~~~~~~~~~~~lr~~la~~~g~~~~i~~~sGt~a~~~al~-~-----~~~g-----d~Vi~~~~~y~~~~~~~~~~~~ 115 (393)
T 1n8p_A 47 YEYSRSQNPNRENLERAVAALENAQYGLAFSSGSATTATILQ-S-----LPQG-----SHAVSIGDVYGGTHRYFTKVAN 115 (393)
T ss_dssp CCBTTTCCHHHHHHHHHHHHHTTCSEEEEESCHHHHHHHHHH-T-----SCSS-----CEEEEESSCCHHHHHHHHHTST
T ss_pred cceecCCChhHHHHHHHHHHHhCCCcEEEECChHHHHHHHHH-H-----cCCC-----CEEEEeCCCchHHHHHHHHHHH
Confidence 344456677889999999999988888888999999999998 5 4567 9999999998764332110100
Q ss_pred CccccccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhc----CCEEEEe
Q 017259 93 DNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKY----NILMIAD 168 (374)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~----~i~li~D 168 (374)
.....+..++.+| ++++++++ ++++++++++++|++|.+.+ +++|.++|++| |+++|+|
T Consensus 116 ---------~~G~~v~~v~~~d-~~l~~~i~---~~t~lv~~~~~~nptG~~~~----l~~i~~la~~~~~~~~~~livD 178 (393)
T 1n8p_A 116 ---------AHGVETSFTNDLL-NDLPQLIK---ENTKLVWIETPTNPTLKVTD----IQKVADLIKKHAAGQDVILVVD 178 (393)
T ss_dssp ---------TTCSCCEEESSHH-HHHHHHSC---SSEEEEEECSSCTTTCCCCC----HHHHHHHHHHHTTTTTCEEEEE
T ss_pred ---------HcCcEEEEeCCCh-HHHHHhcc---cCceEEEEECCCCCcceecC----HHHHHHHHHHhCCCCCCEEEEe
Confidence 1113455666667 88888876 57999999999999999998 99999999999 9999999
Q ss_pred ccccCCcccccCcccccCCCCCcEE--EecccccC-Cccch-hhheeC-HHHHhhcCCCCCCCCCCCCHHHHHHHHHHHH
Q 017259 169 EIQSGLARSGRMLASDWEEVRPDMV--ILGKALGG-GVIPV-SAVLAD-KEVMLCIQPGEHGSTFGGNPLASAVAIASLD 243 (374)
Q Consensus 169 ea~~~~~~~g~~~~~~~~~~~~d~~--s~sK~~~~-G~~~~-G~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~aa~~al~ 243 (374)
|+|+++.. .... ....|++ |++|.+++ |+ |+ |+++++ +++.+.+...........+++.+.++..+++
T Consensus 179 ~a~~~~~~-~~~~-----~~~~di~~~S~sK~~g~~G~-rigG~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~l~ 251 (393)
T 1n8p_A 179 NTFLSPYI-SNPL-----NFGADIVVHSATKYINGHSD-VVLGVLATNNKPLYERLQFLQNAIGAIPSPFDAWLTHRGLK 251 (393)
T ss_dssp CTTTHHHH-CCGG-----GGTCSEEEEETTTTTTCSSC-CCCEEEEESCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHT
T ss_pred CCcccccc-CCHH-----HcCCeEEEEECcccccCCCC-ceeEEEEeCCHHHHHHHHHHHHhcCCCCCHHHHHHHHhccc
Confidence 99985532 1221 1235655 78899995 77 88 788874 7777776543221122345666666655555
Q ss_pred HHhhhcHHHHHHHHHHHHHHHHHHHHH-----hCCCcee---------eEEE-E-eeeEEEEeccCCCchhHHHHHHHHH
Q 017259 244 VIRDEKLAERSAHLGEELRQHLFKIQQ-----QFPNYVK---------EVRG-R-GLFNAVEFDKTALPVSAYDICLKMK 307 (374)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~l~~~~~-----~~~~~~~---------~~~~-~-g~~~~~~~~~~~~~~~~~~~~~~l~ 307 (374)
.+. ...++..++.+++.+.|++... .+|.... ..++ . +.+++|.++.. ......+.+.|.
T Consensus 252 ~~~--~~~~~~~~~~~~l~~~L~~~~~~l~~v~~p~l~~~~~~~~~~~~~~~~~~~~i~~~~l~~~--~~~~~~~l~~l~ 327 (393)
T 1n8p_A 252 TLH--LRVRQAALSANKIAEFLAADKENVVAVNYPGLKTHPNYDVVLKQHRDALGGGMISFRIKGG--AEAASKFASSTR 327 (393)
T ss_dssp THH--HHHHHHHHHHHHHHHHHTSCTTTEEEEECTTSTTSTTHHHHHHHSGGGCCCSEEEEEESSC--HHHHHHHHHHCS
T ss_pred hHH--HHHHHHHHHHHHHHHHHHhCCCCceEEECCCCCCCccHHHHHhhCCCCCCccEEEEEeCCc--HHHHHHHHhhCC
Confidence 332 2234444555555555543211 0111000 0012 4 77888888642 114555666654
Q ss_pred HCCeEec----------c---C--------------CCCEEEEecCCCCCHHHHHHHHHHHHHHH
Q 017259 308 ERGILAK----------P---T--------------HDTIVRLTPPLSISSNELQEGSKALHDVL 345 (374)
Q Consensus 308 ~~Gi~v~----------~---~--------------~~~~lRi~~~~~~~~e~i~~~~~~l~~~~ 345 (374)
..++.++ | . ..+.+|++++...++++++.+.++|+++.
T Consensus 328 ~~~~~~s~G~~~s~~~~p~~~~h~~~~~~~~~~~g~~~~~iRlS~g~~~~~~~i~~l~~al~~~~ 392 (393)
T 1n8p_A 328 LFTLAESLGGIESLLEVPAVMTHGGIPKEAREASGVFDDLVRISVGIEDTDDLLEDIKQALKQAT 392 (393)
T ss_dssp SSEECSCCCCSSCEEECTTTTTSCSSCTTTTTTTSCCTTEEEEECCSSCHHHHHHHHHHHHHHHH
T ss_pred cceECCCCCCCcceeeccccccccccCHHHHHhcCCCCCeEEEEEccCCHHHHHHHHHHHHHHhh
Confidence 3343321 1 1 14799999999999999999999887653
No 181
>2oqx_A Tryptophanase; lyase, pyridoxal phosphate, tryptophan catabolism; HET: CME EPE; 1.90A {Escherichia coli} SCOP: c.67.1.2 PDB: 2c44_A 2v1p_A* 2v0y_A*
Probab=99.92 E-value=1.6e-23 Score=201.07 Aligned_cols=320 Identities=17% Similarity=0.123 Sum_probs=188.9
Q ss_pred CCCcHHHHHHHHhcccCCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccCCccccc
Q 017259 19 YNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIR 98 (374)
Q Consensus 19 ~~~~~~~l~~~l~~~~~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~ 98 (374)
..+...+++++++++++.+++++|+||++|++.++++++.+.+..+|.+ ++|+|++. .||+.+..............
T Consensus 72 ~~~~~~~l~~~la~~~~~~~v~~t~~gt~A~~~al~~~~~~~~~~~G~~-~~d~Ii~~--~~h~~t~~~~~~~~~~~~~~ 148 (467)
T 2oqx_A 72 GSRSYYALAESVKNIFGYQYTIPTHQGRGAEQIYIPVLIKKREQEKGLD-RSKMVAFS--NYFFDTTQGHSQINGCTVRN 148 (467)
T ss_dssp SCHHHHHHHHHHHHHHCCSEEEEEC--CCSHHHHHHHHHHHHHHHHCCC-TTTCEEEE--SSCCHHHHHHHHHTTCEEEE
T ss_pred cCchhHHHHHHHHHHhCcCcEEEcCCcHHHHHHHHHHHhccccccCCCC-ccceEEec--ccccccchhhhhccCcceee
Confidence 3556788999999999999999999999999999999964310001311 11556665 46654321111111001111
Q ss_pred cCCCCCCCc-eeccC---CCHHHHHHHHHhcC-CcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEeccccC
Q 017259 99 GFGPLLPGH-LKVDF---GDITALEKIFKESG-DQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSG 173 (374)
Q Consensus 99 ~~~~~~~~~-~~~~~---~d~~~le~~l~~~~-~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~~ 173 (374)
+..+...+. ...++ .|+++|++++++++ ++++++++++++|++|+..++.+++++|.++|++||++||+|++|+.
T Consensus 149 ~~~~~~~~~~~~~~~~~~~d~~~Le~~i~~~~~~~~~~vi~~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~D~a~~~ 228 (467)
T 2oqx_A 149 VYIKEAFDTGVRYDFKGNFDLEGLERGIEEVGPNNVPYIVATITSNSAGGQPVSLANLKAMYSIAKKYDIPVVMDSARFA 228 (467)
T ss_dssp CBCTTTTCTTSCCTTTTCBCHHHHHHHHHHHCGGGCCCEEEESSBCGGGCBCCCHHHHHHHHHHHHHTTCCEEEECTTHH
T ss_pred ccccccccCCCCCCccCCcCHHHHHHHHHhcCCCceeEEEEeccccCCCCccCCHHHHHHHHHHHHHcCCEEEEEchhhh
Confidence 111100000 00111 28999999998643 47899999999888755666899999999999999999999966542
Q ss_pred ----------CcccccCcc-cc--cCCCCCcE--EEecccccCCccchhhheeCHH----HHhhcCCC----CCCCCCCC
Q 017259 174 ----------LARSGRMLA-SD--WEEVRPDM--VILGKALGGGVIPVSAVLADKE----VMLCIQPG----EHGSTFGG 230 (374)
Q Consensus 174 ----------~~~~g~~~~-~~--~~~~~~d~--~s~sK~~~~G~~~~G~~~~~~~----~~~~~~~~----~~~~~~~~ 230 (374)
.++.|.... +. .. ..+|+ .++||+++.+. .|+++++++ .+..++.. ....+++.
T Consensus 229 e~~~~~~~~~~~~~g~~~~~~~~~~~-~~~d~~~~s~sK~~g~~~--Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (467)
T 2oqx_A 229 ENAYFIKQREAEYKDWTIEQITRETY-KYADMLAMSAKKDAMVPM--GGLLCMKDDSFFDVYTECRTLCVVQEGFPTYGG 305 (467)
T ss_dssp HHHHHHHHHCGGGTTSCHHHHHHHHG-GGCSEEEEESSSTTCCSS--CEEEEECSGGGHHHHHHHHHHHHHTTSSCCCCC
T ss_pred hhhhhcccccccccCccHHHHhhhhh-ccCCeEEEecccccCCCC--ceEEEecChhHHHHHHHHHHhhhccCCcccccc
Confidence 122232111 00 00 11343 47789886322 245666655 33333221 11112222
Q ss_pred -CHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEecc---CCC-ch-hHHHHHH
Q 017259 231 -NPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDK---TAL-PV-SAYDICL 304 (374)
Q Consensus 231 -~~~~~~aa~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~-~~-~~~~~~~ 304 (374)
+..++++...+++...+++..++.+++.+++.+.|++. .++ +. +..+.++++.++. ... .. +..++++
T Consensus 306 ~~~~~~~al~~~l~~~~~~~~~~~~~~~~~~l~~~L~~~--~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 379 (467)
T 2oqx_A 306 LEGGAMERLAVGLYDGMNLDWLAYRIAQVQYLVDGLEEI--GVV-CQ---QAGGHAAFVDAGKLLPHIPADQFPAQALAC 379 (467)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHT--TCC-EE---EECSSCEEEEHHHHSTTSCGGGCHHHHHHH
T ss_pred hhhhHHHHHHHhhHhhhhHHHHHHHHHHHHHHHHHHHHC--CCe-ee---cCCceEEEEechhhcccCCcccccHHHHHH
Confidence 22222222222232222234566677788888888765 231 22 3456777877742 110 01 1556789
Q ss_pred HH-HHCCeEeccCC-----------------CCEEEEecCCC-CCHHHHHHHHHHHHHHHhccCCc
Q 017259 305 KM-KERGILAKPTH-----------------DTIVRLTPPLS-ISSNELQEGSKALHDVLELDLPK 351 (374)
Q Consensus 305 ~l-~~~Gi~v~~~~-----------------~~~lRi~~~~~-~~~e~i~~~~~~l~~~~~~~~~~ 351 (374)
.| .++||.+.+.+ .+++|++++.. ++++++++++++|+++++ +...
T Consensus 380 ~L~~~~gv~~~~~~~~~~~~~~~~g~~~~~~~~~iRl~~~~~~~t~e~i~~~~~~l~~~l~-~~~~ 444 (467)
T 2oqx_A 380 ELYKVAGIRAVEIGSFLLGRDPKTGKQLPCPAELLRLTIPRATYTQTHMDFIIEAFKHVKE-NAAN 444 (467)
T ss_dssp HHHHHHCEECEEESHHHHCBCTTTCSBCCCSCCEEEECCCTTTSCHHHHHHHHHHHHHHHH-SGGG
T ss_pred HHHHhcCceecccccccccccccccccccCccCeEEEEecCCCCCHHHHHHHHHHHHHHHh-hhhh
Confidence 98 88999998732 27999999988 999999999999999998 6543
No 182
>1o69_A Aminotransferase; structural genomics, unknown function; HET: X04; 1.84A {Campylobacter jejuni} SCOP: c.67.1.4 PDB: 1o62_A 1o61_A*
Probab=99.91 E-value=4.8e-23 Score=193.53 Aligned_cols=294 Identities=14% Similarity=0.178 Sum_probs=195.7
Q ss_pred CcHHHHHHHHhcccCCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccCCccccccC
Q 017259 21 DKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGF 100 (374)
Q Consensus 21 ~~~~~l~~~l~~~~~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~ 100 (374)
+...++++.++++++.+++++++||++|++.+++++. ..+| |+|++..++|++....+...+......
T Consensus 32 ~~~~~l~~~la~~~~~~~v~~~~ggt~al~~~~~~l~----~~~g-----d~Vl~~~~~~~~~~~~~~~~g~~~~~v--- 99 (394)
T 1o69_A 32 EFVNRFEQSVKDYSKSENALALNSATAALHLALRVAG----VKQD-----DIVLASSFTFIASVAPICYLKAKPVFI--- 99 (394)
T ss_dssp HHHHHHHHHHHHHHCCSEEEEESCHHHHHHHHHHHTT----CCTT-----CEEEEESSSCGGGTHHHHHTTCEEEEE---
T ss_pred hHHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHcC----CCCC-----CEEEECCCccHHHHHHHHHcCCEEEEE---
Confidence 4588999999999999999999999999999998873 4556 999999999988766554433221111
Q ss_pred CCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEecccc-CCccccc
Q 017259 101 GPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQS-GLARSGR 179 (374)
Q Consensus 101 ~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~-~~~~~g~ 179 (374)
+...+. ..|++++++++++.+++++++++++ ++|...+ +++|.++|++||+++|+||+|+ |+.+.+.
T Consensus 100 -~~~~~~----~~d~~~l~~~i~~~~~~~~~v~~~~---~~G~~~~----l~~i~~l~~~~~~~li~Dea~~~g~~~~~~ 167 (394)
T 1o69_A 100 -DCDETY----NIDVDLLKLAIKECEKKPKALILTH---LYGNAAK----MDEIVEICKENDIVLIEDAAEALGSFYKNK 167 (394)
T ss_dssp -CBCTTS----SBCHHHHHHHHHHCSSCCCEEEEEC---GGGCCCC----HHHHHHHHHHTTCEEEEECTTCTTCEETTE
T ss_pred -EeCCCC----CcCHHHHHHHHhcccCCceEEEEEC---CCCChhh----HHHHHHHHHHcCCEEEEECcCcccceeCCc
Confidence 110000 0279999999985433578888876 4576666 9999999999999999999998 6544333
Q ss_pred CcccccCCCCCcEEEec--ccccCCccchhhheeC-HHHHhhcCCCCC--------------CCCCCCCHHHHHHHHHHH
Q 017259 180 MLASDWEEVRPDMVILG--KALGGGVIPVSAVLAD-KEVMLCIQPGEH--------------GSTFGGNPLASAVAIASL 242 (374)
Q Consensus 180 ~~~~~~~~~~~d~~s~s--K~~~~G~~~~G~~~~~-~~~~~~~~~~~~--------------~~~~~~~~~~~~aa~~al 242 (374)
... . + ...++.++| |.++ |. ++|+++++ +++.+.+..... +..+..+.+..++++..+
T Consensus 168 ~~~-~-~-~~~~~~s~s~~K~l~-~~-~~G~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~l~~l 242 (394)
T 1o69_A 168 ALG-T-F-GEFGVYSYNGNKIIT-TS-GGGMLIGKNKEKIEKARFYSTQARENCLHYEHLDYGYNYRLSNVLGAIGVAQM 242 (394)
T ss_dssp ETT-S-S-SSEEEEECCTTSSSC-CS-SCEEEEESCHHHHHHHHHHTBTCCCSSSSCCCSSCCCBCBCCHHHHHHHHHHH
T ss_pred ccc-c-c-cCcEEEEEeCCccCC-CC-CceEEEECCHHHHHHHHHHHHhccccCccccccccCcccCcCHHHHHHHHHHH
Confidence 211 1 1 135777885 6665 45 78999985 777666542111 111124556665555555
Q ss_pred HHHhhhcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCC------------------CchhHHHHHH
Q 017259 243 DVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTA------------------LPVSAYDICL 304 (374)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~------------------~~~~~~~~~~ 304 (374)
+.++ +..++.+++.+++.+.|+++ ..+.+......+...++++.++... .+.+..++.+
T Consensus 243 ~~l~--~~~~~~~~~~~~l~~~L~~~-~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 319 (394)
T 1o69_A 243 EVLE--QRVLKKREIYEWYKEFLGEY-FSFLDELENSRSNRWLSTALINFDKNELNACQKDINISQKNITLHPKISKLIE 319 (394)
T ss_dssp TTHH--HHHHHHHHHHHHHHHHHTTT-EECCCCCTTEECCCSSEEEEESCCGGGSCCCCEEEECCCCCCCCCHHHHHHHH
T ss_pred HHHH--HHHHHHHHHHHHHHHHhccc-ccccCCCCCCcceeEEEEEEecchhhccccccccccccccccccccCHHHHHH
Confidence 4432 35677778888888877665 2221110001111224566665320 0125778999
Q ss_pred HHHHCCeEeccCCC------------------------CEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 017259 305 KMKERGILAKPTHD------------------------TIVRLTPPLSISSNELQEGSKALHDVLE 346 (374)
Q Consensus 305 ~l~~~Gi~v~~~~~------------------------~~lRi~~~~~~~~e~i~~~~~~l~~~~~ 346 (374)
.|.++||.++++.. ..+|+..+..+|++|+++++++|+++++
T Consensus 320 ~L~~~gI~v~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~edi~~~~~~l~~~~~ 385 (394)
T 1o69_A 320 DLKNKQIETRPLWKAMHTQEVFKGAKAYLNGNSELFFQKGICLPSGTAMSKDDVYEISKLILKSIK 385 (394)
T ss_dssp HHHHTTCCCBCCCCCGGGCGGGTTCEEEECSHHHHHHHHEEEECCCTTCCHHHHHHHHHHHHHHHC
T ss_pred HHHHcCCcccccCCccccchhhhccCCCCChHHHHHhcCeEEccCCCCCCHHHHHHHHHHHHHHHh
Confidence 99999999987520 3456666777999999999999998876
No 183
>3pj0_A LMO0305 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, lyase; HET: LLP MSE; 1.80A {Listeria monocytogenes}
Probab=99.91 E-value=2.8e-24 Score=199.16 Aligned_cols=295 Identities=12% Similarity=0.026 Sum_probs=187.0
Q ss_pred CCCCCcHHHHHHHHhcccCCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccE-EEEeccCCCCcccccc---cccC
Q 017259 17 AFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAI-IVSCCGCFHGRTLAAI---SMSC 92 (374)
Q Consensus 17 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~-vi~~~~~yhg~~~~~~---~~~~ 92 (374)
+++.+...+++++++++++.+..++++||++|+..+++++.. +| ++ +++.++.+|....... ...+
T Consensus 44 ~~~~~~~~~l~~~la~~~~~~~~i~~~~g~~a~~~a~~~~~~-----~g-----~~~vvi~~~~~~~~~~~~~~~~~~~g 113 (359)
T 3pj0_A 44 YGNGAVIEDFETKIAKILGKQSAVFFPSGTMAQQIALRIWAD-----RK-----ENRRVAYHPLSHLEIHEQDGLKELQQ 113 (359)
T ss_dssp TTBSHHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHHHH-----HH-----TCCEEEECTTCHHHHSSTTHHHHHHC
T ss_pred ccCCHHHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHHHh-----cC-----CCcEEEEeccceeeehhcchHHHhcC
Confidence 345677889999999999988888889999999999998853 34 54 5555544444322211 1111
Q ss_pred CccccccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEecccc
Q 017259 93 DNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQS 172 (374)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~ 172 (374)
.... ..+. .+. ..|+++++++ . ++++++++++++|++|+..++.+++++|.++|++||++||+|++|.
T Consensus 114 ~~~~---~v~~-~~~----~~d~~~l~~~-~---~~~~~v~~~~p~n~~~G~~~~~~~l~~l~~~~~~~~~~li~D~a~~ 181 (359)
T 3pj0_A 114 ITPL---LLGT-ANQ----LLTIDDIKSL-R---EPVSSVLIELPQREIGGQLPAFEELEKISEYCHEQGISLHLDGARL 181 (359)
T ss_dssp CEEE---ECSC-TTS----CCCHHHHHTC-S---SCCSEEEEESSBGGGTSBCCCHHHHHHHHHHHHHHTCEEEEEETTC
T ss_pred ceEE---ecCC-cCC----CcCHHHHHhc-c---CCceEEEEEecccCCCcccCCHHHHHHHHHHHHHcCCEEEEECcch
Confidence 1110 0011 000 1278888876 2 5789999999888875555589999999999999999999999986
Q ss_pred CCc--ccccCcccccCCCCCcEE--EecccccCCccchhhheeCHHHHhhcCCC--CCCCCCCCCHHHHHHHHHHHHHHh
Q 017259 173 GLA--RSGRMLASDWEEVRPDMV--ILGKALGGGVIPVSAVLADKEVMLCIQPG--EHGSTFGGNPLASAVAIASLDVIR 246 (374)
Q Consensus 173 ~~~--~~g~~~~~~~~~~~~d~~--s~sK~~~~G~~~~G~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~aa~~al~~~~ 246 (374)
.+. ..+... .......|++ |+||+++++. + |+++.++++++.+... ..+.........++++..+++...
T Consensus 182 ~~~~~~~~~~~--~~~~~~~d~~~~s~sK~~~~~~-g-g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~ 257 (359)
T 3pj0_A 182 WEITPFYQKSA--EEICALFDSVYVSFYKGIGGIA-G-AILAGNDDFVQEAKIWKRRYGGDLISLYPYILSADYYFEKRI 257 (359)
T ss_dssp GGGHHHHTCCH--HHHHTTCSEEEEESSSTTCCSS-C-EEEEECHHHHHHHHHHHHHTTCCCSCCHHHHHHHHHHHHHHG
T ss_pred hcchhhhCCCH--HHhhccCCEEEEeccccCCCcc-e-EEEECCHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHHH
Confidence 321 111111 0111223544 8899988665 4 6788899888877532 112222223333444445555432
Q ss_pred hhcHHHHHHHHHHHHHHHHHHHHHhCCCceee-EEEEeeeEEEEeccCCCchhHHHHHHHHHHCCeEeccCC------CC
Q 017259 247 DEKLAERSAHLGEELRQHLFKIQQQFPNYVKE-VRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTH------DT 319 (374)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~------~~ 319 (374)
+..++.+++.+++.+.|+++ |++... .+..+.++++.++... ..+..++.+.|.++||.++++. .+
T Consensus 258 --~~~~~~~~~~~~l~~~L~~~----~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~l~~~GV~v~~g~~~~~~~~~ 330 (359)
T 3pj0_A 258 --GKMAEYFEAAKGLAERFNSC----SGVKTVPEVPVSNMFHVYFENSA-DEIGAILTKIQDETGVGISGYLQEKSADVC 330 (359)
T ss_dssp --GGHHHHHHHHHHHHHHHHTS----TTEEEESSSCSSSEEEEEESSCH-HHHHHHHHHHHHHHCEECCSCCEEEETTEE
T ss_pred --HHhHHHHHHHHHHHHHHhhC----CCceeeccCCcceEEEEEecCcc-chhHHHHHHHHHhcCcEecCCccccCCCce
Confidence 33455666677777766553 222221 2245667777775321 1146789999999999999863 35
Q ss_pred EEEEecCC---CCCHHHHHHHHHHHHHH
Q 017259 320 IVRLTPPL---SISSNELQEGSKALHDV 344 (374)
Q Consensus 320 ~lRi~~~~---~~~~e~i~~~~~~l~~~ 344 (374)
++|+++.. ..+.+++++++++|.++
T Consensus 331 ~~r~~i~~~~~~~~~e~l~~~l~~l~~~ 358 (359)
T 3pj0_A 331 AFEVSVGDAFAEIPAKNLELVFRCLEKE 358 (359)
T ss_dssp EEEEECCTTGGGSCHHHHHHHHHHHHHH
T ss_pred EEEEEecCccccCCHHHHHHHHHHHHhc
Confidence 78997643 36889999999988765
No 184
>3k7y_A Aspartate aminotransferase; aminotrans pyridoxal phosphate; HET: PLP; 2.80A {Plasmodium falciparum} SCOP: c.67.1.0
Probab=99.91 E-value=4.3e-24 Score=200.64 Aligned_cols=296 Identities=12% Similarity=0.036 Sum_probs=184.9
Q ss_pred CCCCcHHHHHHHHhcccC----CC--eEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCccccccccc
Q 017259 18 FYNDKFPVFAERLTSMFG----YD--MVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMS 91 (374)
Q Consensus 18 ~~~~~~~~l~~~l~~~~~----~~--~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~ 91 (374)
+..++++.+++++....+ .+ +++.|+|+++|+..++.++... . + |+|++.+|+|.++.......+
T Consensus 73 G~~~lr~aia~~~~~~~~~~~~~~~i~i~~t~G~~~al~~~~~~l~~~-------~-~-d~Vlv~~P~y~~~~~~~~~~g 143 (405)
T 3k7y_A 73 GTEDFSTLTQNLIFGNNSKYIEDKKICTIQCIGGTGAIFVLLEFLKML-------N-V-ETLYVTNPPYINHVNMIESRG 143 (405)
T ss_dssp SCHHHHHHHHHHHHCSSCTTTTTTCEEEEEEEHHHHHHHHHHHHHHTT-------T-C-CEEEEESSCCHHHHHHHHTTT
T ss_pred CcHHHHHHHHHHHcCCCCccccccceEEEEcCchHHHHHHHHHHHHhc-------C-C-CEEEEeCCCCHhHHHHHHHcC
Confidence 434445555555544332 23 3699999999999999988521 0 2 899999999988766655544
Q ss_pred CCccccccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccc-cCCCCcccCChhHHHHHHHHHHhcCCEEEEecc
Q 017259 92 CDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPI-QGEAGVIIPPDGYLKAVRDLCSKYNILMIADEI 170 (374)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~-~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea 170 (374)
..........+ .+... |++++++++++. +++++++++++ +||||... +++.+++|.++|++||++||+||+
T Consensus 144 ~~~~~v~~~~~--~~~~~----d~~~l~~~l~~~-~~~~~i~l~~~~~NPTG~~~-s~~~~~~l~~~~~~~~~~vi~De~ 215 (405)
T 3k7y_A 144 FNLKYINFFDY--NLIDI----NYDLFLNDLRNI-PNGSSVILQISCYNPCSVNI-EEKYFDEIIEIVLHKKHVIIFDIA 215 (405)
T ss_dssp CEEEEECCEET--TTTEE----CHHHHHHHHHHS-CSSCEEEECCSSCTTTCCCC-CHHHHHHHHHHHHHHCCEEEEEES
T ss_pred CeEEEEecccc--ccCCc----CHHHHHHHHHhC-CCCeEEEEeCCCCCCCCCCC-CHHHHHHHHHHHHHCCeEEEEecC
Confidence 32221110000 00111 799999999864 34667777765 78888776 899999999999999999999999
Q ss_pred ccCCccccc---Ccccc-cCCCCCcE---EEeccccc-CCccchhhhee---CHHHHhhcCC----CCCCCCCCCCHHHH
Q 017259 171 QSGLARSGR---MLASD-WEEVRPDM---VILGKALG-GGVIPVSAVLA---DKEVMLCIQP----GEHGSTFGGNPLAS 235 (374)
Q Consensus 171 ~~~~~~~g~---~~~~~-~~~~~~d~---~s~sK~~~-~G~~~~G~~~~---~~~~~~~~~~----~~~~~~~~~~~~~~ 235 (374)
|.++.+.+. ..... .......+ .||||.++ +|+ |+||+++ ++++.+.+.. .......+.+.+++
T Consensus 216 Y~~l~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~l~Gl-RiG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q 294 (405)
T 3k7y_A 216 YQGFGHTNLEEDVLLIRKFEEKNIAFSVCQSFSKNMSLYGE-RAGALHIVCKNQEEKKIVFNNLCFIVRKFYSSPVIHTN 294 (405)
T ss_dssp CTTTSSSSTTGGGHHHHHHHTTTCCEEEEEECTTTSCCTTT-TEEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCHHHH
T ss_pred cccccCCCcccchHHHHHHHhcCCcEEEEeeCCccCCCccc-cceEEEEEeCCHHHHHHHHHHHHHHHhcccCCCcHHHH
Confidence 998754321 11111 11122333 39999999 799 9999753 5665544421 11112224567887
Q ss_pred HHHHHHHHHH------hh--hcHHHHHHHHHHHHHHHHH----HHHHhCCCceeeEEEE-eeeEEEEeccCCCchhHHHH
Q 017259 236 AVAIASLDVI------RD--EKLAERSAHLGEELRQHLF----KIQQQFPNYVKEVRGR-GLFNAVEFDKTALPVSAYDI 302 (374)
Q Consensus 236 ~aa~~al~~~------~~--~~~~~~~~~~~~~~~~~l~----~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~ 302 (374)
.++.++++.- .+ ..++++++++++.+.+.|+ +++. +.......+. |.|+|+.++ .++
T Consensus 295 ~~~~~~l~~~~l~~~~~~~l~~~~~~~~~~R~~l~~~L~~~~~~~g~--~~~~~~~~p~gg~f~~~~l~--------~~~ 364 (405)
T 3k7y_A 295 RILCQLLNNQNLKLNWIKELSQLSQRITNNRILFFNKLETYQKKYNL--NYDWNVYKKQRGLFSFVPLL--------AKI 364 (405)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGTC--CCCGGGGSSCCSSEEECGGG--------GGG
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCC--CCCCccccCCceEEEecCCC--------HHH
Confidence 7777666531 11 1334445666666666665 3320 1001112233 445554332 144
Q ss_pred HHHHHHCCeEeccCCCCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 017259 303 CLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVLE 346 (374)
Q Consensus 303 ~~~l~~~Gi~v~~~~~~~lRi~~~~~~~~e~i~~~~~~l~~~~~ 346 (374)
+++|.++||.+.|++ ||++. ..+++++++++++|+++++
T Consensus 365 ~~~L~~~gV~v~p~~----Ris~a-~~~~~~i~~~~~~i~~~~~ 403 (405)
T 3k7y_A 365 AEHLKTHHIYIINNG----RINVS-GITKNNVDYIADKICLSLS 403 (405)
T ss_dssp TTTTTTTTEECCTTS----EEEGG-GCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHCCEeecCCC----eEEEe-ccCHHHHHHHHHHHHHHHh
Confidence 566777799999974 99843 3477899999999999987
No 185
>3lws_A Aromatic amino acid beta-eliminating lyase/threonine aldolase; structural genomics, joint center for structural genomics, JCSG; HET: LLP MSE; 2.00A {Exiguobacterium sibiricum}
Probab=99.91 E-value=7e-24 Score=196.40 Aligned_cols=293 Identities=13% Similarity=0.082 Sum_probs=184.4
Q ss_pred CCCcHHHHHHHHhcccCCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccE-EEEeccCCCCccccc---ccccCCc
Q 017259 19 YNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAI-IVSCCGCFHGRTLAA---ISMSCDN 94 (374)
Q Consensus 19 ~~~~~~~l~~~l~~~~~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~-vi~~~~~yhg~~~~~---~~~~~~~ 94 (374)
.++...+|+++|+++++.+..++++||++|+..+++++. .+| |+ +++.++.+|...... ....+..
T Consensus 45 ~~~~~~~l~~~la~~~~~~~~i~~~~G~~a~~~al~~~~-----~~g-----d~~~vi~~~~~~~~~~~~~~~~~~~g~~ 114 (357)
T 3lws_A 45 TGAIIEPFEQKFADVLGMDDAVFFPSGTMAQQVALRIWS-----DET-----DNRTVAYHPLCHLEIHEQDGLKELHPIE 114 (357)
T ss_dssp EETTHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHHH-----HHH-----TCCEEEECTTCHHHHSSTTHHHHHSSCE
T ss_pred CChHHHHHHHHHHHHhCCCcEEEecCcHHHHHHHHHHHh-----hcC-----CCcEEEecccceeeeeccchhhhccCcE
Confidence 357889999999999998988888999999999999885 344 52 444444444432221 1111110
Q ss_pred cccccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEeccccC-
Q 017259 95 EAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSG- 173 (374)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~~- 173 (374)
.. ..+. .+. ..|+++++++ . +++++++++++|++|+..++.+++++|.++|++||++||+||+|..
T Consensus 115 ~~---~v~~-~~~----~~d~~~l~~~----~-~~~~v~~~~p~np~~G~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~ 181 (357)
T 3lws_A 115 TI---LVGA-ADR----LMTLDEIKAL----P-DIACLLLELPQREIGGVAPAFSELETISRYCRERGIRLHLDGARLFE 181 (357)
T ss_dssp EE---ECSC-TTS----CCCHHHHHTC----C-SCSEEEEESSBGGGTSBCCCHHHHHHHHHHHHHTTCEEEEEETTHHH
T ss_pred EE---EecC-CCC----CcCHHHHhcC----c-CcceEEEEcccccCCceeCCHHHHHHHHHHHHHcCCEEEEECchhhh
Confidence 00 0010 000 1278888765 1 3888999999888744555899999999999999999999999861
Q ss_pred -CcccccCcccccCCCCCc--EEEecccccCCccchhhheeCHHHHhhcCCCC--CCCCCCCCHHHHHHHHHHHHHHhhh
Q 017259 174 -LARSGRMLASDWEEVRPD--MVILGKALGGGVIPVSAVLADKEVMLCIQPGE--HGSTFGGNPLASAVAIASLDVIRDE 248 (374)
Q Consensus 174 -~~~~g~~~~~~~~~~~~d--~~s~sK~~~~G~~~~G~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~aa~~al~~~~~~ 248 (374)
....+.... . +....| +.|+||++++.. . |++++++++++.+.... .+.+.....+.++++.++++...
T Consensus 182 ~~~~~~~~~~-~-~~~~~d~~~~s~sK~~~~~~-g-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-- 255 (357)
T 3lws_A 182 MLPYYEKTAA-E-IAGLFDSIYISFYKGLGGIA-G-AILAGPAAFCQTARIWKRRYGGDLISLYPYIVSADYYYELRK-- 255 (357)
T ss_dssp HHHHHTCCHH-H-HHTTSSEEEEESSSTTCCSS-C-EEEEECHHHHHHHHHHHHHTTCCCSCCHHHHHHHHHHHHHHT--
T ss_pred hhhhcCCChH-H-HHhcCCEEEEeccccCCCCc-e-EEEEcCHHHHHHHHHHHHHhcCCcccchHHHHHHHHHHHHHH--
Confidence 111121111 0 001223 348999996544 3 78888988887775321 12222223344455556666432
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHhCCCcee-eEEEEeeeEEEEeccCCCchhHHHHHHHHHHCCeEeccCC-----CCEEE
Q 017259 249 KLAERSAHLGEELRQHLFKIQQQFPNYVK-EVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTH-----DTIVR 322 (374)
Q Consensus 249 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~-----~~~lR 322 (374)
+..++.+++.+++.+.|+++ |++.. ..++.+.++|+.++... ..+..++.+.|.++||.++++. ..++|
T Consensus 256 ~~~~~~~~~~~~l~~~L~~~----~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~Gi~v~~g~~~~~~~~~~r 330 (357)
T 3lws_A 256 DRMGQYYEQAKQLAEQFNAL----PGVHTTPEVPVSNMFHLHFDGQA-ADISPKLEQVQEETGLGFVGYLVDKDGYCSTE 330 (357)
T ss_dssp TCHHHHHHHHHHHHHHHHTS----TTEEEESSSCSSSEEEEEEESCH-HHHHHHHHHHHHHHCEESCSCCEECSSEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHhC----CCCeeccCCCcceEEEEEecCCh-HHHHHHHHHHHHhcCeEEecccccCCCceEEE
Confidence 22344566666676666543 23322 12345778888886531 0136789999999999998863 24899
Q ss_pred EecCC---CCCHHHHHHHHHHHHHHH
Q 017259 323 LTPPL---SISSNELQEGSKALHDVL 345 (374)
Q Consensus 323 i~~~~---~~~~e~i~~~~~~l~~~~ 345 (374)
++++. ..+.+++++++++|.+++
T Consensus 331 ~~i~~~~~~~~~~~l~~al~~l~~al 356 (357)
T 3lws_A 331 ISVGDAYGELDQQTRDAGFARLRQAF 356 (357)
T ss_dssp EEBCTTGGGSCHHHHHHHHHHHHHHC
T ss_pred EEecchhhhcCHHHHHHHHHHHHHhc
Confidence 98653 368899999999998765
No 186
>2po3_A 4-dehydrase; external aldimine, PLP, aminotransferase, TDP-sugar; HET: T4K; 2.10A {Streptomyces venezuelae}
Probab=99.91 E-value=2e-23 Score=197.99 Aligned_cols=282 Identities=16% Similarity=0.160 Sum_probs=185.2
Q ss_pred CCcHHHHHHHHhcccCCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccCCcccccc
Q 017259 20 NDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRG 99 (374)
Q Consensus 20 ~~~~~~l~~~l~~~~~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~ 99 (374)
.+...++++.++++++.+++++++||++|++.+++++. +| |+|++.+++|++........+......
T Consensus 51 ~~~~~~l~~~la~~~~~~~v~~~~ggt~al~~~l~~l~------~g-----d~Vlv~~~~~~~~~~~~~~~G~~~~~v-- 117 (424)
T 2po3_A 51 GPLVREFEERVAGLAGVRHAVATCNATAGLQLLAHAAG------LT-----GEVIMPSMTFAATPHALRWIGLTPVFA-- 117 (424)
T ss_dssp CHHHHHHHHHHHHHHTSSEEEEESCHHHHHHHHHHHHT------CC-----SEEEEESSSCTHHHHHHHHTTCEEEEE--
T ss_pred CHHHHHHHHHHHHHhCCCeEEEeCCHHHHHHHHHHHcC------CC-----CEEEECCCccHHHHHHHHHcCCEEEEE--
Confidence 46788999999999999999999999999999999872 35 999999999988765443332211111
Q ss_pred CCCCCCCceeccC-CCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEecccc-CCccc
Q 017259 100 FGPLLPGHLKVDF-GDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQS-GLARS 177 (374)
Q Consensus 100 ~~~~~~~~~~~~~-~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~-~~~~~ 177 (374)
+... -.+ -|+++++++++ ++++++++++ ++|...+ +++|.++|++||++||+||+|+ |+.+.
T Consensus 118 --~~~~----~~~~~d~~~l~~~i~---~~~~~v~~~~---~tG~~~~----l~~i~~la~~~~~~li~Dea~~~g~~~~ 181 (424)
T 2po3_A 118 --DIDP----DTGNLDPDQVAAAVT---PRTSAVVGVH---LWGRPCA----ADQLRKVADEHGLRLYFDAAHALGCAVD 181 (424)
T ss_dssp --CBCT----TTSSBCHHHHGGGCC---TTEEEEEEEC---GGGCCCC----HHHHHHHHHHTTCEEEEECTTCTTCEET
T ss_pred --ecCC----CcCCcCHHHHHHhhC---cCCcEEEEEC---CCCCcCC----HHHHHHHHHHcCCEEEEECccccCCeEC
Confidence 1100 011 17888888776 4788888754 4676666 9999999999999999999999 66544
Q ss_pred ccCcccccCCCCCcEE--Eec--ccccCCccchhhheeC-HHHHhhcCCCCC------------CCCCCCCHHHHHHHHH
Q 017259 178 GRMLASDWEEVRPDMV--ILG--KALGGGVIPVSAVLAD-KEVMLCIQPGEH------------GSTFGGNPLASAVAIA 240 (374)
Q Consensus 178 g~~~~~~~~~~~~d~~--s~s--K~~~~G~~~~G~~~~~-~~~~~~~~~~~~------------~~~~~~~~~~~~aa~~ 240 (374)
+..+ +..+|++ ||| |++++ . ++|+++.+ +++.+.+..... +.++..+.+..+++..
T Consensus 182 ~~~~-----~~~~di~~~S~sk~K~l~~-~-~~G~~v~~~~~l~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~l~ 254 (424)
T 2po3_A 182 GRPA-----GSLGDAEVFSFHATKAVNA-F-EGGAVVTDDADLAARIRALHNFGFDLPGGSPAGGTNAKMSEAAAAMGLT 254 (424)
T ss_dssp TEET-----TSSSSEEEEECCTTSSSCC-S-SCEEEEESCHHHHHHHHHHHBTTTTCTTCCTTCCCBCCCCHHHHHHHHH
T ss_pred Ceec-----ccccCEEEEeCCCCCCccC-C-CCeEEEeCCHHHHHHHHHHHhcCccccccccccCcCCCcCHHHHHHHHH
Confidence 4321 1123554 666 77766 6 89999988 777666542111 1122335555555554
Q ss_pred HHHHHhhhcHHHHHHHHHHHHHHHHHHHHHhCCCceeeE--EE-E--eeeEEEEecc---CCCchhHHHHHHHHHHCCeE
Q 017259 241 SLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEV--RG-R--GLFNAVEFDK---TALPVSAYDICLKMKERGIL 312 (374)
Q Consensus 241 al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~--~~-~--g~~~~~~~~~---~~~~~~~~~~~~~l~~~Gi~ 312 (374)
.++.+ +++.++.+++.+++.+.|++ +|++.... .+ . ..++++.+++ .. +..++.+.|.++||.
T Consensus 255 ~~~~~--~~~~~~~~~~~~~l~~~L~~----~~g~~~~~~~~~~~~~~~~~~i~~~~~~~~~---~~~~l~~~L~~~gI~ 325 (424)
T 2po3_A 255 SLDAF--PEVIDRNRRNHAAYREHLAD----LPGVLVADHDRHGLNNHQYVIVEIDEATTGI---HRDLVMEVLKAEGVH 325 (424)
T ss_dssp HHHHH--HHHHHHHHHHHHHHHHHTCS----CTTEEECCGGGGSCCCCCCEEEEECHHHHSS---CHHHHHHHHHHTTEE
T ss_pred HHHHH--HHHHHHHHHHHHHHHHHhcc----CCCccccCCCCCCccccEEEEEEECCccchh---hHHHHHHHHHHCCCc
Confidence 44332 23444555555555554433 22221111 11 1 2344466653 22 578899999999999
Q ss_pred eccCCC-------------------------CEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 017259 313 AKPTHD-------------------------TIVRLTPPLSISSNELQEGSKALHDVLE 346 (374)
Q Consensus 313 v~~~~~-------------------------~~lRi~~~~~~~~e~i~~~~~~l~~~~~ 346 (374)
+++... ..+|+.++..++++|+++++++|+++++
T Consensus 326 v~~~~~~~~~~~~~~~~~g~~~~~~~~r~~~~~l~l~~~~~~t~e~i~~~~~~L~~~~~ 384 (424)
T 2po3_A 326 TRAYFSPGCHELEPYRGQPHAPLPHTERLAARVLSLPTGTAIGDDDIRRVADLLRLCAT 384 (424)
T ss_dssp CBCTTCSCGGGSTTTTTSCCCCCHHHHHHHTTEEEECCSTTCCHHHHHHHHHHHHHHHH
T ss_pred eecccCCccccchhhhhcCCCCChhHHHHhcCEEEeeCCCCCCHHHHHHHHHHHHHHHh
Confidence 986321 1278877789999999999999998886
No 187
>2fnu_A Aminotransferase; protein-product complex, structural genomics, montreal-kings bacterial structural genomics initiative, BSGI; HET: PMP UD1; 1.50A {Helicobacter pylori} SCOP: c.67.1.4 PDB: 2fni_A* 2fn6_A*
Probab=99.91 E-value=7.3e-24 Score=197.45 Aligned_cols=292 Identities=14% Similarity=0.150 Sum_probs=189.2
Q ss_pred CCCcHHHHHHHHhcccCCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccCCccccc
Q 017259 19 YNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIR 98 (374)
Q Consensus 19 ~~~~~~~l~~~l~~~~~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~ 98 (374)
+.+...++++.|+++++.+++++++||++|++.+++.+..+ .++| |+|++..++|++....+...+....+
T Consensus 30 ~~~~~~~l~~~la~~~~~~~v~~~~ggt~al~~~~~~~~~~--~~~g-----d~Vl~~~~~~~~~~~~~~~~g~~~~~-- 100 (375)
T 2fnu_A 30 QGKRSLLFEEALCEFLGVKHALVFNSATSALLTLYRNFSEF--SADR-----NEIITTPISFVATANMLLESGYTPVF-- 100 (375)
T ss_dssp SSHHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHSSCC--CTTS-----CEEEECSSSCTHHHHHHHHTTCEEEE--
T ss_pred CChHHHHHHHHHHHHhCCCeEEEeCCHHHHHHHHHHHhccc--CCCC-----CEEEECCCccHhHHHHHHHCCCEEEE--
Confidence 35678899999999999899999999999999999887311 2456 99999999998876554433221111
Q ss_pred cCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEeccccCCcccc
Q 017259 99 GFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSG 178 (374)
Q Consensus 99 ~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~~~~~~g 178 (374)
.+...+. ..|+++++++++ +++++++++++ +|.+.+ +++|.++|++||++||+||+|+.....
T Consensus 101 --~~~~~~~----~~d~~~l~~~i~---~~~~~v~~~~~---tG~~~~----l~~i~~l~~~~~~~li~D~a~~~~~~~- 163 (375)
T 2fnu_A 101 --AGIKNDG----NIDELALEKLIN---ERTKAIVSVDY---AGKSVE----VESVQKLCKKHSLSFLSDSSHALGSEY- 163 (375)
T ss_dssp --CCBCTTS----SBCGGGSGGGCC---TTEEEEEEECG---GGCCCC----HHHHHHHHHHHTCEEEEECTTCTTCEE-
T ss_pred --eccCCCC----CCCHHHHHhhcC---cCceEEEEeCC---cCCccC----HHHHHHHHHHcCCEEEEECccccCCeE-
Confidence 1111111 126788887776 46887766655 688887 999999999999999999999843211
Q ss_pred cCcccccCCCCCcEEEec--ccccCCccchhhhee-C-HHHHhhcCCCC----------------CCCCCCCCHHHHHHH
Q 017259 179 RMLASDWEEVRPDMVILG--KALGGGVIPVSAVLA-D-KEVMLCIQPGE----------------HGSTFGGNPLASAVA 238 (374)
Q Consensus 179 ~~~~~~~~~~~~d~~s~s--K~~~~G~~~~G~~~~-~-~~~~~~~~~~~----------------~~~~~~~~~~~~~aa 238 (374)
.......++ +.++.|+| |.+++| +|+++. + +++.+.+.... .+.++..+.+.++++
T Consensus 164 ~~~~~~~~~-~i~~~s~s~~K~~~~g---~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 239 (375)
T 2fnu_A 164 QNKKVGGFA-LASVFSFHAIKPITTA---EGGAVVTNDSELHEKMKLFRSHGMLKKDFFEGEVKSIGHNFRLNEIQSALG 239 (375)
T ss_dssp TTEETTSSS-SEEEEECCTTSSSCCS---SCEEEEESCHHHHHHHHHHTBTTEEESSSSCEEESSCCCBCCCCHHHHHHH
T ss_pred CCeeccccC-CeEEEeCCCCCCcccc---CceEEEeCCHHHHHHHHHHHhcCCccccccccccccccccCCCCHHHHHHH
Confidence 110111111 23455888 998654 466665 3 66655543221 122234566655555
Q ss_pred HHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHhCCCceeeE-----EEEeeeEEEEeccCCCch-hHHHHHHHHHHCCeE
Q 017259 239 IASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEV-----RGRGLFNAVEFDKTALPV-SAYDICLKMKERGIL 312 (374)
Q Consensus 239 ~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-----~~~g~~~~~~~~~~~~~~-~~~~~~~~l~~~Gi~ 312 (374)
...++.+ +++.++.+++.+++.+.|+++ |++.... ...+.++++.++.. +. +..++.+.|.++||.
T Consensus 240 ~~~~~~~--~~~~~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~L~~~gi~ 311 (375)
T 2fnu_A 240 LSQLKKA--PFLMQKREEAALTYDRIFKDN----PYFTPLHPLLKDKSSNHLYPILMHQK--FFTCKKLILESLHKRGIL 311 (375)
T ss_dssp HHHHTTH--HHHHHHHHHHHHHHHHHHTTC----SSEEESGGGCSSCCCCSCEEEEECGG--GGGGHHHHHHHHHHTTEE
T ss_pred HHHHHHH--HHHHHHHHHHHHHHHHHhhcC----CCccccCCCCCCCcceEEEEEEeCcc--ccchHHHHHHHHHHCCCC
Confidence 4443322 245666666667766666543 2221111 12234456666532 11 467899999999999
Q ss_pred eccCC-------------------------CCEEEEecCCCCCHHHHHHHHHHHHHHHhccC
Q 017259 313 AKPTH-------------------------DTIVRLTPPLSISSNELQEGSKALHDVLELDL 349 (374)
Q Consensus 313 v~~~~-------------------------~~~lRi~~~~~~~~e~i~~~~~~l~~~~~~~~ 349 (374)
++... .+++|++++...+++|+++++++|+++++ ++
T Consensus 312 v~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~lRi~~~~~~t~~~i~~~~~~l~~~~~-~~ 372 (375)
T 2fnu_A 312 AQVHYKPIYQYQLYQQLFNTAPLKSAEDFYHAEISLPCHANLNLESVQNIAHSVLKTFE-SF 372 (375)
T ss_dssp CBCCCCCGGGSHHHHHHHCCCCCHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHHHHHH-HH
T ss_pred ccccccccccchhhhcCCCccCChHHHHHHhCEEEecCCCCCCHHHHHHHHHHHHHHHH-Hh
Confidence 98311 16899999988999999999999999987 54
No 188
>3cog_A Cystathionine gamma-lyase; CTH, PLP, propargylglycine, SGC, inhibitor, structural genom stockholm, structural genomics consortium; HET: PLP; 2.00A {Homo sapiens} PDB: 2nmp_A* 3elp_B
Probab=99.91 E-value=5e-24 Score=200.58 Aligned_cols=292 Identities=14% Similarity=0.124 Sum_probs=194.7
Q ss_pred CcCCCCCcHHHHHHHHhcccCCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccCCc
Q 017259 15 SRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDN 94 (374)
Q Consensus 15 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~~~ 94 (374)
++.++++...++++.++++++.+..++++||++|+..+++ + .++| |+|++.++.|++...........
T Consensus 61 y~r~~~p~~~~l~~~la~~~g~~~~i~~~sG~~ai~~~~~-l-----~~~g-----d~Vl~~~~~y~~~~~~~~~~~~~- 128 (403)
T 3cog_A 61 YSRSGNPTRNCLEKAVAALDGAKYCLAFASGLAATVTITH-L-----LKAG-----DQIICMDDVYGGTNRYFRQVASE- 128 (403)
T ss_dssp -----CHHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHT-T-----SCTT-----CEEEEESSCCHHHHHHHHHTGGG-
T ss_pred ccCCCCchHHHHHHHHHHHhCCCcEEEECCHHHHHHHHHH-H-----hCCC-----CEEEEeCCCcchHHHHHHHHHHH-
Confidence 3456678889999999999988777778888999998887 5 5567 99999999998744322111100
Q ss_pred cccccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcC-CEEEEeccccC
Q 017259 95 EAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYN-ILMIADEIQSG 173 (374)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~-i~li~Dea~~~ 173 (374)
....+..++.+|+++++++++ ++++++++++++|++|.+.+ +++|.++|++|| +++|+||+|++
T Consensus 129 --------~G~~v~~v~~~d~~~l~~~i~---~~t~~v~~~~p~nptG~~~~----l~~i~~la~~~g~~~livD~~~~~ 193 (403)
T 3cog_A 129 --------FGLKISFVDCSKIKLLEAAIT---PETKLVWIETPTNPTQKVID----IEGCAHIVHKHGDIILVVDNTFMS 193 (403)
T ss_dssp --------GTCEEEEECTTSHHHHHHHCC---TTEEEEEEESSCTTTCCCCC----HHHHHHHHTSSSCCEEEEECTTTC
T ss_pred --------cCCEEEEECCCCHHHHHHhcC---cCCeEEEEECCCCCCCeeeC----HHHHHHHHHHcCCCEEEEECCCcc
Confidence 113355566668999998887 57999999999999999998 999999999999 99999999986
Q ss_pred CcccccCcccccCCCCCcEE--EecccccC-CccchhhheeC-HHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHhhhc
Q 017259 174 LARSGRMLASDWEEVRPDMV--ILGKALGG-GVIPVSAVLAD-KEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRDEK 249 (374)
Q Consensus 174 ~~~~g~~~~~~~~~~~~d~~--s~sK~~~~-G~~~~G~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~aa~~al~~~~~~~ 249 (374)
+.. ..++ +...|++ |++|.++| |..++|+++++ +++.+.+...........+++.+.++..+++.+. .
T Consensus 194 ~~~-~~~~-----~~~~div~~S~sK~~~g~~~~~~G~v~~~~~~l~~~l~~~~~~~g~~~~~~~~~~~~~~l~~l~--~ 265 (403)
T 3cog_A 194 PYF-QRPL-----ALGADISMYSATKYMNGHSDVVMGLVSVNCESLHNRLRFLQNSLGAVPSPIDCYLCNRGLKTLH--V 265 (403)
T ss_dssp TTT-CCTT-----TTTCSEEEEETTTTTTCSSCCCCEEEEECCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHTTHH--H
T ss_pred ccc-CCcc-----ccCCeEEEEcChhhccCCCCCeEEEEEECcHHHHHHHHHHHHhcCCCCCHHHHHHHHhhhhHHH--H
Confidence 522 1221 2345665 88899985 32278998884 6777776643333344567888877777776432 2
Q ss_pred HHHHHHHHHHHHHHHHHHHH----------HhCCCce---eeEEEEeeeEEEEeccCCCchhHHHHHHHHHHCCeEecc-
Q 017259 250 LAERSAHLGEELRQHLFKIQ----------QQFPNYV---KEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKP- 315 (374)
Q Consensus 250 ~~~~~~~~~~~~~~~l~~~~----------~~~~~~~---~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~- 315 (374)
..++..++...+.+.+++.. ..+|++. ....+.+.++.|.++.. ..+..+.|.+.|+.+..
T Consensus 266 r~~~~~~n~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~~~~g~~~~~~l~~~-----~~~~~~~l~~~~i~~~~~ 340 (403)
T 3cog_A 266 RMEKHFKNGMAVAQFLESNPWVEKVIYPGLPSHPQHELVKRQCTGCTGMVTFYIKGT-----LQHAEIFLKNLKLFTLAE 340 (403)
T ss_dssp HHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSCCCSEEEEEESSC-----HHHHHHHHHHCSSSEECS
T ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEECCCCCCCCcHHHHHhcCCCCceEEEEEecCC-----HHHHHHHHHhCCcceEcc
Confidence 24444455555555554320 0111110 01123477888877642 34566667777774421
Q ss_pred --C---------------------------CCCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 017259 316 --T---------------------------HDTIVRLTPPLSISSNELQEGSKALHDVLE 346 (374)
Q Consensus 316 --~---------------------------~~~~lRi~~~~~~~~e~i~~~~~~l~~~~~ 346 (374)
+ ..+.+|++++...++++++.+.++|+++++
T Consensus 341 s~G~~~sl~~~p~~~~~~~~~~~~~~~~g~~~~~iRlSvg~e~~~d~i~~l~~al~~~~~ 400 (403)
T 3cog_A 341 SLGGFESLAELPAIMTHASVLKNDRDVLGISDTLIRLSVGLEDEEDLLEDLDQALKAAHP 400 (403)
T ss_dssp CCSSSSCEEECTTTTTTTTSCHHHHHHHTCCTTEEEEECCSSCHHHHHHHHHHHHHHHCC
T ss_pred CCCCcceeeecccccccccCCHHHHHhcCCCcCeEEEEeCCCCHHHHHHHHHHHHHHhhc
Confidence 0 157999999987777777777777766554
No 189
>2aeu_A Hypothetical protein MJ0158; selenocysteine synthase, PLP, pyridoxal phosphate, HOMO- oligomerization, unknown function; 1.70A {Methanocaldococcus jannaschii} SCOP: c.67.1.8 PDB: 2aev_A*
Probab=99.91 E-value=2.8e-24 Score=200.39 Aligned_cols=292 Identities=12% Similarity=0.032 Sum_probs=183.7
Q ss_pred HHHHHHHHhcccCC---CeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccCCcccccc
Q 017259 23 FPVFAERLTSMFGY---DMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRG 99 (374)
Q Consensus 23 ~~~l~~~l~~~~~~---~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~ 99 (374)
.+++++.+++++|. +++++++||++|++.+++.+ +| |+|++.+|+||++......+... +
T Consensus 60 ~~~~~~~~a~~~g~~~~~~~~~~~ggt~a~~~~~~~~-------~g-----d~Vl~~~~~y~~~~~~~~~~~~~-g---- 122 (374)
T 2aeu_A 60 AEKVNEYGLKHLGGDENDKCVGFNRTSSAILATILAL-------KP-----KKVIHYLPELPGHPSIERSCKIV-N---- 122 (374)
T ss_dssp HHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHHHHH-------CC-----SEEEEECSSSSCCTHHHHHHHHT-T----
T ss_pred HHHHHHHHHHHhCCCCcceEEEEcChHHHHHHHHHhC-------CC-----CEEEEecCCCCccHHHHHHHHHc-C----
Confidence 34566666666687 78999999999999999865 46 99999999998854321111000 0
Q ss_pred CCCCCCCceeccCCCHHHHHHHHHhcCCcEEE-EEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEeccccCCcccc
Q 017259 100 FGPLLPGHLKVDFGDITALEKIFKESGDQIAG-FLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSG 178 (374)
Q Consensus 100 ~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~-vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~~~~~~g 178 (374)
..+..+ .|+++++++ + +++++ +++++++|++|. +...+++|.++|++||++||+||+|+.+. .+
T Consensus 123 -----~~~~~v--~d~~~l~~~-~---~~~~~~v~~~~p~nptG~---~~~~l~~i~~l~~~~~~~li~De~~~~~~-~~ 187 (374)
T 2aeu_A 123 -----AKYFES--DKVGEILNK-I---DKDTLVIITGSTMDLKVI---ELENFKKVINTAKNKEAIVFVDDASGARV-RL 187 (374)
T ss_dssp -----CEEEEE--SCHHHHHTT-C---CTTEEEEEECBCTTSCBC---CHHHHHHHHHHHHHHTCCEEEECTTHHHH-HH
T ss_pred -----cEEEEe--CCHHHHHhc-C---CCccEEEEEccCCCCCCC---CcccHHHHHHHHHHcCCEEEEECCccccc-cc
Confidence 112222 488888876 3 57888 999888888883 44559999999999999999999987442 11
Q ss_pred cCcccccCCCCCcEE--EecccccCCccchhhheeCHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHhhhcHHHHHHH
Q 017259 179 RMLASDWEEVRPDMV--ILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRDEKLAERSAH 256 (374)
Q Consensus 179 ~~~~~~~~~~~~d~~--s~sK~~~~G~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~al~~~~~~~~~~~~~~ 256 (374)
...........+|++ |+||.++ |+ ++||+++++++++.+.........+.+++.++++.++++.+..+ ..++..+
T Consensus 188 ~~~~~~~~~~~~di~~~S~sK~l~-g~-~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~al~~~~~~-~~~~~~~ 264 (374)
T 2aeu_A 188 LFNQPPALKLGADLVVTSTDKLME-GP-RGGLLAGKKELVDKIYIEGTKFGLEAQPPLLAGIYRALKNFNLE-RIRKAFE 264 (374)
T ss_dssp HTTCCCHHHHTCSEEEEETTSSSS-SC-SCEEEEEEHHHHHHHHHHHHTTTCBCCHHHHHHHHHHHHHCCHH-HHHHHHH
T ss_pred ccccCCccccCCcEEEecCccccc-Cc-ceEEEEECHHHHHHHHHhhccccCCCCHHHHHHHHHHHHHHhHH-HHHHHHH
Confidence 110000111234655 7889976 47 99999999998887764332233466888999999988875321 2344444
Q ss_pred HHHHH----HHHHHHHHHhC---CCceeeEEEEeeeEEEE-eccCCCchhHHHHHHHHH-HCCeEeccCC-----CCEEE
Q 017259 257 LGEEL----RQHLFKIQQQF---PNYVKEVRGRGLFNAVE-FDKTALPVSAYDICLKMK-ERGILAKPTH-----DTIVR 322 (374)
Q Consensus 257 ~~~~~----~~~l~~~~~~~---~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~l~-~~Gi~v~~~~-----~~~lR 322 (374)
+.+.+ ++.|.+....+ +++.....+.|.++++. ++......+..+++..++ ++||.+.++. .+++|
T Consensus 265 ~~~~~~~~~~~~l~~~L~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~~g~~~~~~~~~lR 344 (374)
T 2aeu_A 265 RAKNFDLSKIEKLNKELKAIDDNINIVYERTPTGFVIKRVYKDDTINIKKLIEIGFNLLKNYGIITITVAGMPGASKSLR 344 (374)
T ss_dssp HHHHCCCHHHHHHHHHHTTTCTTEEEEEEECSSEEEEEEEESSHHHHHHHHHHHHHHHHHHHCEECSTTSSSCSSCCSEE
T ss_pred HHHHHHHHHHHHHHHhhhhhhhccCcceeeCCceEEEEeecccccccccchHHHHHHHHHhCCEEEecCCCCCCCCCeEE
Confidence 44444 55555543221 01111223345554442 211000001123665554 6799998752 45899
Q ss_pred EecCC-CCCHHHHHHHHHHHHHHHhccCC
Q 017259 323 LTPPL-SISSNELQEGSKALHDVLELDLP 350 (374)
Q Consensus 323 i~~~~-~~~~e~i~~~~~~l~~~~~~~~~ 350 (374)
|+++. ..++++++++.+.|+++++ ++.
T Consensus 345 i~~~~~~~~~~~l~~l~~~l~~~l~-~~~ 372 (374)
T 2aeu_A 345 IDLTSRDAERIDDNYIIKAIVESIK-MAF 372 (374)
T ss_dssp EETTSGGGGGSCHHHHHHHHHHHHH-HHT
T ss_pred EEcCCchHHHHHHHHHHHHHHHHHH-HHh
Confidence 99753 2233458899999998888 654
No 190
>2c81_A Glutamine-2-deoxy-scyllo-inosose aminotransferase; SMAT, butirosin, aminoglycoside antibiotics; HET: PMP; 1.7A {Bacillus circulans} PDB: 2c7t_A*
Probab=99.91 E-value=1.1e-22 Score=192.62 Aligned_cols=306 Identities=13% Similarity=0.138 Sum_probs=194.4
Q ss_pred hHHHHHHHhcccc-C--cCCCCCcHHHHHHHHhcccCCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEecc
Q 017259 2 KALQEQAEKLTLS-S--RAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCG 78 (374)
Q Consensus 2 ~a~~~~~~~~~~~-~--~~~~~~~~~~l~~~l~~~~~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~ 78 (374)
+++.+++.+.... + ..+..++.+++++++++++|.+++++++||++|++.+++.+. ..+| |+|++..+
T Consensus 20 ~a~~~~~~~~~~~~~~~~~g~~~l~~~l~~~la~~~g~~~~i~~~~gt~al~~~~~~~~----~~~g-----d~Vl~~~~ 90 (418)
T 2c81_A 20 RKIEEVFQSNRWAISGYWTGEESMERKFAKAFADFNGVPYCVPTTSGSTALMLALEALG----IGEG-----DEVIVPSL 90 (418)
T ss_dssp HHHHHHHHHTCCSTTSBCCSSCCHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHTT----CCTT-----CEEEEESS
T ss_pred HHHHHHHhcCCccccCcccCCHHHHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHcC----CCCc-----CEEEECCC
Confidence 4666666654322 1 123345589999999999998899999999999999998873 3566 99999999
Q ss_pred CCCCcccccccccCCccccccCCCCCCCceeccC-CCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHH
Q 017259 79 CFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDF-GDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDL 157 (374)
Q Consensus 79 ~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l 157 (374)
+|++....+...+...... +... ..+ -|+++++++++ ++++++++++ ++|...+ +++|.++
T Consensus 91 ~~~~~~~~~~~~g~~~~~~----~~~~----~~~~~d~~~l~~~i~---~~~~~v~~~~---~~G~~~~----~~~i~~~ 152 (418)
T 2c81_A 91 TWIATATAVLNVNALPVFV----DVEA----DTYCIDPQLIKSAIT---DKTKAIIPVH---LFGSMAN----MDEINEI 152 (418)
T ss_dssp SCTHHHHHHHHTTCEEEEE----CBCT----TTCSBCHHHHGGGCC---TTEEEECCBC---CTTCCCC----HHHHHHH
T ss_pred ccHhHHHHHHHcCCEEEEE----ecCC----CCCCcCHHHHHHhhC---CCCeEEEEeC---CcCCccc----HHHHHHH
Confidence 9988765544333221111 1100 011 17888888876 4788888754 5677776 9999999
Q ss_pred HHhcCCEEEEeccccCCc-ccccCcccccCCCCCcEEEe--cccccCCccchhhheeC-HHHHhhcCCCCCC--------
Q 017259 158 CSKYNILMIADEIQSGLA-RSGRMLASDWEEVRPDMVIL--GKALGGGVIPVSAVLAD-KEVMLCIQPGEHG-------- 225 (374)
Q Consensus 158 ~~~~~i~li~Dea~~~~~-~~g~~~~~~~~~~~~d~~s~--sK~~~~G~~~~G~~~~~-~~~~~~~~~~~~~-------- 225 (374)
|++||++||+||+|+.+. ..+... ..++ +.++.|| +|.+++| ++|+++.+ +++.+.+......
T Consensus 153 ~~~~~~~li~D~a~~~~~~~~~~~~--~~~~-~~~~~s~s~~K~~~~g--~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~ 227 (418)
T 2c81_A 153 AQEHNLFVIEDCAQSHGSVWNNQRA--GTIG-DIGAFSCQQGKVLTAG--EGGIIVTKNPRLFELIQQLRADSRVYCDDS 227 (418)
T ss_dssp HHHTTCEEEEECTTCTTCEETTEET--TSSS-SEEEEECCTTSSSCSS--SCEEEEESCHHHHHHHHHHHBTTEEECSCG
T ss_pred HHHCCCEEEEECcccccCccCCEec--cccc-ceEEEeccCCcccCCC--CeEEEEECCHHHHHHHHHHHHhCccccccc
Confidence 999999999999999653 222211 1111 2345577 8999874 78888884 6765554321000
Q ss_pred ------C------------CCCCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEE----Ee
Q 017259 226 ------S------------TFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRG----RG 283 (374)
Q Consensus 226 ------~------------~~~~~~~~~~aa~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~----~g 283 (374)
. ....+.+..+.....++.+ +++.++.+++.+++.+.|++ +|++.....+ ..
T Consensus 228 ~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~~~~l~~~--~~~~~~~~~~~~~l~~~L~~----~~g~~~~~~~~~~~~~ 301 (418)
T 2c81_A 228 SELMHGDMQLVKKGDIQGSNYCLSEFQSAILLDQLQEL--DDKNAIREKNAMFLNDALSK----IDGIKVMKRPPQVSRQ 301 (418)
T ss_dssp GGCCTTCBSEEECCSSCCCBCCCCHHHHHHHHHHHTTH--HHHHHHHHHHHHHHHHHHTT----STTEEECCCCTTEEEC
T ss_pred cccccchhhccccccccCcCCCcCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhcc----CCCcccCCCCCCCccc
Confidence 0 0112333322222223222 23455555555666555543 2222111111 11
Q ss_pred e--eEEEEecc----CCCchhHHHHHHHHHHC-CeE---eccCC------------------------------------
Q 017259 284 L--FNAVEFDK----TALPVSAYDICLKMKER-GIL---AKPTH------------------------------------ 317 (374)
Q Consensus 284 ~--~~~~~~~~----~~~~~~~~~~~~~l~~~-Gi~---v~~~~------------------------------------ 317 (374)
. ++.+.+++ .. +..++.+.|.++ ||. +++..
T Consensus 302 ~~~~~~~~~~~~~~~~~---~~~~l~~~L~~~~gI~~~~v~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (418)
T 2c81_A 302 TYYGYVFRFDPVKFGGL---NADQFCEILREKLNMGTFYLHPPYLPVHKNPLFCPWTKNRYLKSVRKTEAYWRGLHYPVS 378 (418)
T ss_dssp CCSEEEEEECGGGTTTC---CHHHHHHHHHHHHTCCTTTEECCCCCGGGCTTCCGGGCTTSCHHHHCCHHHHHTCCCHHH
T ss_pred ccEEEEEEEcccccccc---CHHHHHHHHHHcCCCCcccccccccccccCchhcccccccccccccccccccccCCChHH
Confidence 2 33355653 22 578999999999 999 76531
Q ss_pred ----CCEEEEecCCCC-CHHHHHHHHHHHHHHHhccC
Q 017259 318 ----DTIVRLTPPLSI-SSNELQEGSKALHDVLELDL 349 (374)
Q Consensus 318 ----~~~lRi~~~~~~-~~e~i~~~~~~l~~~~~~~~ 349 (374)
.+.+|++++..+ |++|+++++++|+++++ .+
T Consensus 379 ~~~~~~~lrl~~~~~~gt~edi~~~~~~l~~~~~-~~ 414 (418)
T 2c81_A 379 ERASGQSIVIHHAILLAEPSHLSLLVDAVAELAR-KF 414 (418)
T ss_dssp HHHHHHEEEEEGGGGGSCHHHHHHHHHHHHHHHH-TT
T ss_pred HHHHhCEEEecCCccCCCHHHHHHHHHHHHHHHH-hh
Confidence 148999999999 99999999999999988 54
No 191
>2vi8_A Serine hydroxymethyltransferase; SHMT, E53Q, FTHF, enzyme memory, pyridoxal phosphate, one-carbon metabolism, PLP-dependent enzymes; HET: PLP; 1.67A {Bacillus stearothermophilus} PDB: 2vi9_A* 2via_A* 2vib_A* 1kkj_A* 1kkp_A* 1kl1_A* 1kl2_A* 1yjs_A* 2w7f_A* 2w7d_A* 2w7e_A* 2w7g_A* 2w7h_A* 1yjz_A* 1yjy_A* 2vgu_A* 2vgs_A* 2vgt_A* 2vgv_A* 2vgw_A* ...
Probab=99.90 E-value=1.3e-22 Score=190.98 Aligned_cols=296 Identities=13% Similarity=0.094 Sum_probs=193.3
Q ss_pred cHHHHH----HHHhcccCCCeE-EecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccc--cccCCc
Q 017259 22 KFPVFA----ERLTSMFGYDMV-LPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAI--SMSCDN 94 (374)
Q Consensus 22 ~~~~l~----~~l~~~~~~~~~-~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~--~~~~~~ 94 (374)
...+++ +++++++|.+.. ++++||++|++.+++++ ..+| |+|++..++|++...... ...+.
T Consensus 66 ~~~~l~~~~r~~la~~~g~~~~~i~~~sGt~a~~~a~~~~-----~~~g-----d~Vl~~~~~~~~~~~~~~~~~~~g~- 134 (405)
T 2vi8_A 66 YVDIVEELARERAKQLFGAEHANVQPHSGAQANMAVYFTV-----LEHG-----DTVLGMNLSHGGHLTHGSPVNFSGV- 134 (405)
T ss_dssp HHHHHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHHHHHH-----CCTT-----CEEEEECGGGTCCTTTTCTTSHHHH-
T ss_pred HHHHHHHHHHHHHHHHhCCCceEEEecCcHHHHHHHHHHh-----cCCC-----CEEEEecccccchhcccchhhhccc-
Confidence 344555 588888887765 44678899999999988 4567 999999998765532111 11110
Q ss_pred cccccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEeccccCC
Q 017259 95 EAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGL 174 (374)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~~~ 174 (374)
.......+.... ....|++++++++++. +++++++++.+ .|...+ +++|.++|++||++||+||+|+ +
T Consensus 135 ~~~~~~~~~~~~---~~~~d~~~l~~~i~~~--~~~~v~~~~~~--~~~~~~----l~~i~~l~~~~~~~li~Dea~~-~ 202 (405)
T 2vi8_A 135 QYNFVAYGVDPE---THVIDYDDVREKARLH--RPKLIVAAAAA--YPRIID----FAKFREIADEVGAYLMVDMAHI-A 202 (405)
T ss_dssp HSEEEEECBCTT---TCSBCHHHHHHHHHHH--CCSEEEECCSS--CCSCCC----HHHHHHHHHHHTCEEEEECTTT-H
T ss_pred eeEEEecccccc---cCCcCHHHHHHHHHhc--CCeEEEEeCCC--CCccCC----HHHHHHHHHHcCCEEEEEcccc-c
Confidence 001000000000 0112799999999853 46777775433 344445 9999999999999999999998 3
Q ss_pred cccccCcccccCCCCCcEE--EecccccCCccchhhheeCHHHHhhcCCCCCCCCCCC-CHHHHHHHHHHHHHHhh---h
Q 017259 175 ARSGRMLASDWEEVRPDMV--ILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGG-NPLASAVAIASLDVIRD---E 248 (374)
Q Consensus 175 ~~~g~~~~~~~~~~~~d~~--s~sK~~~~G~~~~G~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~aa~~al~~~~~---~ 248 (374)
+..+........ ..+|++ |+||+++|+. + |++++++++.+.+........++. +...++++.++++.+.. +
T Consensus 203 g~~~~~~~~~~~-~~~di~~~s~sK~~~g~~-g-G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~aa~~~al~~~~~~~~~ 279 (405)
T 2vi8_A 203 GLVAAGLHPNPV-PYAHFVTTTTHKTLRGPR-G-GMILCQEQFAKQIDKAIFPGIQGGPLMHVIAAKAVAFGEALQDDFK 279 (405)
T ss_dssp HHHHTTSSCCST-TTCSEEEEESSSTTCCCS-C-EEEEECHHHHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHHHSHHHH
T ss_pred cccccCcCCCcc-ccCCEEEEeccccCCCCC-C-eEEEEcHHHHHHHHhhhcccccCCCCHHHHHHHHHHHHHHHhhhHH
Confidence 222211111111 145665 8899998665 5 889999888777654322233333 55566666677776543 3
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCchhHHHHHHHHHHCCeEeccC----------CC
Q 017259 249 KLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPT----------HD 318 (374)
Q Consensus 249 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~----------~~ 318 (374)
++.++++++.+++.+.|+++ .+ .+.. ..+.+.++++.++... .+..++.+.|.++||.++++ ..
T Consensus 280 ~~~~~~~~~~~~l~~~L~~~--g~-~~~~-~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~gi~v~~g~~~~~~~~~~~~ 353 (405)
T 2vi8_A 280 AYAKRVVDNAKRLASALQNE--GF-TLVS-GGTDNHLLLVDLRPQQ--LTGKTAEKVLDEVGITVNKNTIPYDPESPFVT 353 (405)
T ss_dssp HHHHHHHHHHHHHHHHHHHT--TC-EEGG-GSCSSSEEEEECGGGT--CCHHHHHHHHHHHTEECEEECCTTCSSCTTTC
T ss_pred HHHHHHHHHHHHHHHHHHhC--CC-eEec-CCCCceEEEEEccCCC--CCHHHHHHHHHHcCceeccCcCccccCCCCCC
Confidence 56777778888888887765 12 1111 1134678888876311 15778999999999999874 25
Q ss_pred CEEEEecCC----CCCHHHHHHHHHHHHHHHhccCC
Q 017259 319 TIVRLTPPL----SISSNELQEGSKALHDVLELDLP 350 (374)
Q Consensus 319 ~~lRi~~~~----~~~~e~i~~~~~~l~~~~~~~~~ 350 (374)
+++|++++. ..+++++++++++|+++++ ++.
T Consensus 354 ~~iRis~~~~~~~~~~~~~i~~~~~~l~~~~~-~~~ 388 (405)
T 2vi8_A 354 SGIRIGTAAVTTRGFGLEEMDEIAAIIGLVLK-NVG 388 (405)
T ss_dssp SEEEEECHHHHHTTCCHHHHHHHHHHHHHHHT-CTT
T ss_pred CceEEeeeeeeecCCCHHHHHHHHHHHHHHHh-ccc
Confidence 789999886 5789999999999999998 664
No 192
>3nmy_A Xometc, cystathionine gamma-lyase-like protein; Cys-Met metabolism PLP-dependent enzyme family, CYST gamma lyase, pyridoxal-phosphate; HET: PLP; 2.07A {Xanthomonas oryzae PV} SCOP: c.67.1.0 PDB: 3e6g_A* 3nnp_A*
Probab=99.90 E-value=7.6e-24 Score=198.83 Aligned_cols=288 Identities=15% Similarity=0.103 Sum_probs=189.8
Q ss_pred ccCcCCCCCcHHHHHHHHhcccCCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccc-c
Q 017259 13 LSSRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISM-S 91 (374)
Q Consensus 13 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~-~ 91 (374)
+.++.+.++...+|+++|+++.+.+.+++++||++|++.+ ..+ .++| |+|++.++.|++........ .
T Consensus 59 ~~y~r~~~p~~~~l~~~la~l~g~~~~~~~~sG~~Ai~~~-~~l-----~~~g-----d~Vi~~~~~y~~~~~~~~~~~~ 127 (400)
T 3nmy_A 59 FEYSRTHNPTRFAYERCVAALEGGTRAFAFASGMAATSTV-MEL-----LDAG-----SHVVAMDDLYGGTFRLFERVRR 127 (400)
T ss_dssp CCBTTTCCHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHH-HTT-----SCTT-----CEEEEESSCCHHHHHHHHHTHH
T ss_pred cccccCCCHHHHHHHHHHHHHhCCCCEEEecCHHHHHHHH-HHH-----cCCC-----CEEEEeCCCchHHHHHHHHhhH
Confidence 4445577888999999999999989999999999999874 222 5677 99999999998655443322 0
Q ss_pred CCccccccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEeccc
Q 017259 92 CDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQ 171 (374)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~ 171 (374)
.. ....+..++.+|+++++++++ ++++++++++++|++|.+.+ +++|.++|++||+++|+||+|
T Consensus 128 ~~---------~g~~~~~v~~~d~~~l~~~i~---~~~~~v~~e~~~np~G~~~~----l~~i~~la~~~g~~livDe~~ 191 (400)
T 3nmy_A 128 RT---------AGLDFSFVDLTDPAAFKAAIR---ADTKMVWIETPTNPMLKLVD----IAAIAVIARKHGLLTVVDNTF 191 (400)
T ss_dssp HH---------HCCEEEEECTTSHHHHHHHCC---TTEEEEEEESSCTTTCCCCC----HHHHHHHHHHTTCEEEEECTT
T ss_pred hh---------cCeEEEEECCCCHHHHHHHhc---cCCCEEEEECCCCCCCeeec----HHHHHHHHHHcCCEEEEECCC
Confidence 00 013455667779999999987 58999999999999999998 999999999999999999999
Q ss_pred cCCcccccCcccccCCCCCcEEEecccccC-Cccchhh--he-eCHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHhh
Q 017259 172 SGLARSGRMLASDWEEVRPDMVILGKALGG-GVIPVSA--VL-ADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRD 247 (374)
Q Consensus 172 ~~~~~~g~~~~~~~~~~~~d~~s~sK~~~~-G~~~~G~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~al~~~~~ 247 (374)
+... ...+ ..++.+..+.|++|.++| |. ++|+ ++ .++++.+.+...........+++.+..++..++.+.
T Consensus 192 ~~~~-~~~~---~~~g~div~~S~sK~l~g~g~-~~gG~~vv~~~~~~~~~l~~~~~~~g~~~~~~~a~~~l~~l~~l~- 265 (400)
T 3nmy_A 192 ASPM-LQRP---LSLGADLVVHSATKYLNGHSD-MVGGIAVVGDNAELAEQMAFLQNSIGGVQGPFDSFLALRGLKTLP- 265 (400)
T ss_dssp THHH-HCCG---GGGTCSEEEEETTTTTTCSSS-CCCEEEEECSCHHHHHHHHHHHHHHCCBCCHHHHHHHHHHHTTHH-
T ss_pred cccc-cCCh---hhcCCcEEEecCccccCCCCC-cceeEEEEeCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHhHhHHH-
Confidence 7311 1111 112334445578999996 45 6655 33 466777776543333445667777777666665432
Q ss_pred hcHHHHHHHHHHHHHHHHHHHHHhCCCceeeE------------------EEEeeeEEEEeccCCCchhHHHHHHHHHHC
Q 017259 248 EKLAERSAHLGEELRQHLFKIQQQFPNYVKEV------------------RGRGLFNAVEFDKTALPVSAYDICLKMKER 309 (374)
Q Consensus 248 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~------------------~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~ 309 (374)
...++..++..++.+.|++ .| .+..+ ++.|.+++|+++... .....+.+.|.-.
T Consensus 266 -~r~~~~~~~a~~l~~~L~~----~p-~v~~V~~p~l~~~~~~~~~~~~~~g~G~~~~~~l~~~~--~~~~~~~~~l~~~ 337 (400)
T 3nmy_A 266 -LRMRAHCENALALAQWLET----HP-AIEKVIYPGLASHPQHVLAKRQMSGFGGIVSIVLKGGF--DAAKRFCEKTELF 337 (400)
T ss_dssp -HHHHHHHHHHHHHHHHHTT----CT-TEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEETTHH--HHHHHHHHHCSSS
T ss_pred -HHHHHHHHHHHHHHHHHHc----CC-CEeEEECCCCCCCcCHHHHHHhCCCCCceEEEEeCCcH--HHHHHHHHcCCcc
Confidence 2345555566666655543 22 33222 456889999986421 1344555555433
Q ss_pred CeEec----------cC-----------------CCCEEEEecCCCCCHHHHHHHHHHHHHHH
Q 017259 310 GILAK----------PT-----------------HDTIVRLTPPLSISSNELQEGSKALHDVL 345 (374)
Q Consensus 310 Gi~v~----------~~-----------------~~~~lRi~~~~~~~~e~i~~~~~~l~~~~ 345 (374)
++.++ |. .++.+|++++... .+.+++.|++++
T Consensus 338 ~~~~s~G~~~sl~~~p~~~~~~~~~~~~~~~~gi~~~liRlsvGle~----~~dli~dl~~al 396 (400)
T 3nmy_A 338 TLAESLGGVESLVNHPAVMTHASIPVARREQLGISDALVRLSVGIED----LGDLRGDLERAL 396 (400)
T ss_dssp EECSCCCSSSCEEECTTTTTTTTSCHHHHHHHTCCTTEEEEECCSSC----HHHHHHHHHHHH
T ss_pred eEecCCCCCcceeeCccccccccCCHHHHHhcCCCcCeEEEEeCcCC----HHHHHHHHHHHH
Confidence 32221 11 2578999966544 344455555555
No 193
>2fq6_A Cystathionine beta-lyase; protein-inhibitor complex, PLP cofactor covalently bound to inhibitor; HET: P3F; 1.78A {Escherichia coli} SCOP: c.67.1.3 PDB: 2gqn_A* 1cl1_A* 1cl2_A*
Probab=99.90 E-value=3e-23 Score=195.48 Aligned_cols=299 Identities=9% Similarity=-0.010 Sum_probs=195.9
Q ss_pred ccccCcCCCCCcHHHHHHHHhcccCCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccc
Q 017259 11 LTLSSRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISM 90 (374)
Q Consensus 11 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~ 90 (374)
..+.++.+.++..++++++++++.|.+.+++++||++|++.+++.+ .++| |+|++..+.|++........
T Consensus 72 ~~~~y~r~~~p~~~~le~~lA~l~g~~~~i~~ssGt~Ai~~al~~l-----~~~G-----d~Vi~~~~~y~~~~~~~~~~ 141 (415)
T 2fq6_A 72 GELFYGRRGTLTHFSLQQAMCELEGGAGCVLFPCGAAAVANSILAF-----IEQG-----DHVLMTNTAYEPSQDFCSKI 141 (415)
T ss_dssp TSCCCTTTCCHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHTT-----CCTT-----CEEEEETTSCHHHHHHHHHT
T ss_pred CCccccCCCCchHHHHHHHHHHHhCCCeEEEeCCHHHHHHHHHHHH-----hCCC-----CEEEEeCCCchHHHHHHHHH
Confidence 3455666778899999999999999888888999999999998876 5677 99999999997754332111
Q ss_pred cCCccccccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHh--cCCEEEEe
Q 017259 91 SCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSK--YNILMIAD 168 (374)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~--~~i~li~D 168 (374)
... ....+..++.+|+++++++|+ +++++|++++++|++|.+.+ +++|.++|++ ||+++|+|
T Consensus 142 l~~---------~G~~v~~v~~~d~~~le~ai~---~~tklV~~e~~~NptG~v~d----l~~I~~la~~~~~g~~livD 205 (415)
T 2fq6_A 142 LSK---------LGVTTSWFDPLIGADIVKHLQ---PNTKIVFLESPGSITMEVHD----VPAIVAAVRSVVPDAIIMID 205 (415)
T ss_dssp GGG---------GTCEEEEECTTCGGGGGGGCC---TTEEEEEEESSCTTTCCCCC----HHHHHHHHHHHCTTCEEEEE
T ss_pred HHH---------cCcEEEEECCCCHHHHHHhhc---cCCcEEEEECCCCCCCEeec----HHHHHHHHHhhcCCCEEEEE
Confidence 100 113345556668999998887 57999999999999999998 9999999999 99999999
Q ss_pred ccccCCcccccCcccccCCCCCcEE--EecccccC-CccchhhheeCHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHH
Q 017259 169 EIQSGLARSGRMLASDWEEVRPDMV--ILGKALGG-GVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVI 245 (374)
Q Consensus 169 ea~~~~~~~g~~~~~~~~~~~~d~~--s~sK~~~~-G~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~al~~~ 245 (374)
++|+... ...++ ....|++ |++|.+++ |...+|++++++++.+.+...........+++.+..+..+++.+
T Consensus 206 ~a~a~~~-~~~p~-----~~g~Div~~S~sK~lg~~g~~~~G~l~~~~~~~~~l~~~~~~~G~~~~~~~a~~~~~~l~~l 279 (415)
T 2fq6_A 206 NTWAAGV-LFKAL-----DFGIDVSIQAATKYLVGHSDAMIGTAVCNARCWEQLRENAYLMGQMVDADTAYITSRGLRTL 279 (415)
T ss_dssp CTTTTTT-SSCGG-----GGTCSEEEEETTTTTTCSSSCCCEEEEECTTTHHHHHHHHHHTTCCCCHHHHHHHHHHHHHH
T ss_pred CCCcccc-cCCcc-----ccCCeEEEEeCccccCCCCCceEEEEEeCHHHHHHHHHHHHhcCCCCCHHHHHHHHhhhhHH
Confidence 9997321 11221 2345665 77799996 43146888888777666653221112234555555555556544
Q ss_pred hhhcHHHHHHHHHHHHHHHHHHHHH----hCCCcee---------eEEEEeeeEEEEeccCCCchhHHHHHHHHHHCCeE
Q 017259 246 RDEKLAERSAHLGEELRQHLFKIQQ----QFPNYVK---------EVRGRGLFNAVEFDKTALPVSAYDICLKMKERGIL 312 (374)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~l~~~~~----~~~~~~~---------~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~ 312 (374)
. ...++..++...+.+.|++... .+|+... ...+.+.+++|.++..........+.+.|...++.
T Consensus 280 ~--~r~~~~~~n~~~l~~~L~~~~~v~~v~~p~l~~~~~~~~~~~~~~~~g~i~sf~l~g~~~~~~~~~~l~~l~~~~~a 357 (415)
T 2fq6_A 280 G--VRLRQHHESSLKVAEWLAEHPQVARVNHPALPGSKGHEFWKRDFTGSSGLFSFVLKKKLNNEELANYLDNFSLFSMA 357 (415)
T ss_dssp H--HHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSCCCSEEEEEESSCCCHHHHHHHHTTCSSCEEC
T ss_pred H--HHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEECCCCCHHHHHHHHHhCCcCeEe
Confidence 2 2345555666666666655310 0111100 01135778888887520001344455544322322
Q ss_pred ec------------c-----------C--CCCEEEEecCCCCCHHHHHHHHHHHHH
Q 017259 313 AK------------P-----------T--HDTIVRLTPPLSISSNELQEGSKALHD 343 (374)
Q Consensus 313 v~------------~-----------~--~~~~lRi~~~~~~~~e~i~~~~~~l~~ 343 (374)
++ | . ..+.+|++++...++++++.+.++|++
T Consensus 358 ~s~G~~~s~~~~~~p~~~s~~~~~~~~g~~~~~iRlS~G~e~~~d~i~~l~~al~~ 413 (415)
T 2fq6_A 358 YSWGGYESLILANQPEHIAAIRPQGEIDFSGTLIRLHIGLEDVDDLIADLDAGFAR 413 (415)
T ss_dssp SCCCSSSCEEEEECHHHHHTTCTTCCCCCCSCEEEEECCSSCHHHHHHHHHHHHHT
T ss_pred ccCCCCceeEEecCCCccccccchhhcCCCCCEEEEEecCCCHHHHHHHHHHHHHh
Confidence 21 1 1 247999999998888888888887764
No 194
>3ecd_A Serine hydroxymethyltransferase 2; ssgcid, decode, bupsa00008A, one-carbon metabolism, pyridoxa phosphate, structural genomics; 1.60A {Burkholderia pseudomallei}
Probab=99.90 E-value=2.5e-22 Score=190.16 Aligned_cols=292 Identities=15% Similarity=0.112 Sum_probs=179.9
Q ss_pred cHHHHH-HHHhcccCCCeE-EecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcc-ccccc-ccCCcccc
Q 017259 22 KFPVFA-ERLTSMFGYDMV-LPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRT-LAAIS-MSCDNEAI 97 (374)
Q Consensus 22 ~~~~l~-~~l~~~~~~~~~-~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~-~~~~~-~~~~~~~~ 97 (374)
..++++ +++++.++.+.. ++++||++|++.+++.+ ..+| |+|++.+++|++.. ..... ..+. .+.
T Consensus 78 ~~~~~a~~~~~~~~~~~~~~v~~~~Gs~a~~~al~~~-----~~~g-----d~Vi~~~~~~~~~~~~~~~~~~~g~-~~~ 146 (425)
T 3ecd_A 78 EVEALAIERVKRLFNAGHANVQPHSGAQANGAVMLAL-----AKPG-----DTVLGMSLDAGGHLTHGAKPALSGK-WFN 146 (425)
T ss_dssp HHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHHHHHH-----CCTT-----CEEEEECC-------------------CE
T ss_pred HHHHHHHHHHHHHhCCCCceeecCchHHHHHHHHHHc-----cCCC-----CEEEEcccccccceecchhhhhccc-cee
Confidence 456665 777788888877 45999999999999988 5677 99999999998732 22211 1111 001
Q ss_pred ccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEecccc-CCcc
Q 017259 98 RGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQS-GLAR 176 (374)
Q Consensus 98 ~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~-~~~~ 176 (374)
....+...+. -..|+++|++++++. ++++++++++++ |...+ +++|.++|++||++||+||+|+ |+.+
T Consensus 147 ~~~~~~~~~~---~~~d~~~l~~~i~~~--~~~~v~~~~~~~--~~~~~----l~~i~~l~~~~~~~li~De~~~~g~~~ 215 (425)
T 3ecd_A 147 ALQYGVSRDT---MLIDYDQVEALAQQH--KPSLIIAGFSAY--PRKLD----FARFRAIADSVGAKLMVDMAHIAGVIA 215 (425)
T ss_dssp EEEECCCTTT---SSCCHHHHHHHHHHH--CCSEEEEECSCC--CSCCC----HHHHHHHHHHHTCEEEEECGGGHHHHH
T ss_pred eeecCCCccc---CccCHHHHHHHHhhc--CCcEEEEccccC--CCcCC----HHHHHHHHHHcCCEEEEECcChHhhhh
Confidence 0000100000 012799999999753 567888875443 44444 9999999999999999999975 4433
Q ss_pred cccCcccccCCCCCcEE--EecccccCCccchhhheeC-HHHHhhcCCCCC-CCCCCCCHHHHHHHHHHHHHHh-h--hc
Q 017259 177 SGRMLASDWEEVRPDMV--ILGKALGGGVIPVSAVLAD-KEVMLCIQPGEH-GSTFGGNPLASAVAIASLDVIR-D--EK 249 (374)
Q Consensus 177 ~g~~~~~~~~~~~~d~~--s~sK~~~~G~~~~G~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~aa~~al~~~~-~--~~ 249 (374)
.+...... . ..|++ |+||++ +|. ++||++++ +.+.+.+..... +...+.+...++++..++.... . ++
T Consensus 216 ~~~~~~~~--~-~~di~~~s~sK~l-~g~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~~~~~~~~~~ 290 (425)
T 3ecd_A 216 AGRHANPV--E-HAHVVTSTTHKTL-RGP-RGGFVLTNDEEIAKKINSAVFPGLQGGPLMHVIAGKAVAFGEALTDDFKT 290 (425)
T ss_dssp TTSSCCGG--G-TCSEEEEESSGGG-CCC-SCEEEEESCHHHHHHHHHHHC-----CCCHHHHHHHHHHHHHHTSHHHHH
T ss_pred cccccCch--h-cCcEEEecCCccc-CCC-CcEEEEeCCHHHHHHHHhhhCccccCCccHHHHHHHHHHHHHHHHHhHHH
Confidence 33322111 1 14554 777999 556 78998887 566665543222 2222344445454454544332 2 25
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCceee-EEEEeeeEEEEecc-CCCchhHHHHHHHHHHCCeEec----cC------C
Q 017259 250 LAERSAHLGEELRQHLFKIQQQFPNYVKE-VRGRGLFNAVEFDK-TALPVSAYDICLKMKERGILAK----PT------H 317 (374)
Q Consensus 250 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~g~~~~~~~~~-~~~~~~~~~~~~~l~~~Gi~v~----~~------~ 317 (374)
+.++++++.+++.+.|++.. +... ..+.+.++++.++. .. +...+.+.|.++||.++ |+ .
T Consensus 291 ~~~~~~~~~~~l~~~L~~~g-----~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~~~gi~v~~~~~p~~~~~~~~ 362 (425)
T 3ecd_A 291 YIDRVLANAQALGDVLKAGG-----VDLVTGGTDNHLLLVDLRPKGL---KGAQVEQALERAGITCNKNGIPFDPEKPTI 362 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHTT-----CEEGGGSCSSSEEEEECGGGTC---CHHHHHHHHHHTTEECEECCCTTCSSCTTT
T ss_pred HHHHHHHHHHHHHHHHHhCC-----CeeccCCCCceEEEEEeCCCCC---CHHHHHHHHHHcCCEecccccCCCCCCCCC
Confidence 66777777888888777632 2111 11346677777753 22 57788889999999998 43 1
Q ss_pred CCEEEEecCCC----CCHHHHHHHHHHHHHHHhccC
Q 017259 318 DTIVRLTPPLS----ISSNELQEGSKALHDVLELDL 349 (374)
Q Consensus 318 ~~~lRi~~~~~----~~~e~i~~~~~~l~~~~~~~~ 349 (374)
.+.+|++++.. .+++++++++++|+++++ ..
T Consensus 363 ~~~iRi~~~~~~~~~~~~e~i~~~~~~l~~~l~-~~ 397 (425)
T 3ecd_A 363 TSGIRLGTPAGTTRGFGAAEFREVGRLILEVFE-AL 397 (425)
T ss_dssp CSEEEEESHHHHHTTCCHHHHHHHHHHHHHHHH-HH
T ss_pred ccceeccchhheeccCCHHHHHHHHHHHHHHHh-cc
Confidence 35899996544 459999999999999998 54
No 195
>3ffr_A Phosphoserine aminotransferase SERC; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP MSE P33; 1.75A {Cytophaga hutchinsonii atcc 33406}
Probab=99.90 E-value=3.9e-23 Score=191.40 Aligned_cols=275 Identities=10% Similarity=0.036 Sum_probs=186.1
Q ss_pred CcHHHHHHHHhcccCC---CeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccc-cccccCCccc
Q 017259 21 DKFPVFAERLTSMFGY---DMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLA-AISMSCDNEA 96 (374)
Q Consensus 21 ~~~~~l~~~l~~~~~~---~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~-~~~~~~~~~~ 96 (374)
+...++++++++++|. +++++++||++|++.+++.+. .+ +.+++..+.| +.... .....+
T Consensus 43 ~~~~~~~~~la~~~g~~~~~~v~~~~g~t~al~~~~~~l~---------~~--~~i~~~~~~~-~~~~~~~~~~~g---- 106 (362)
T 3ffr_A 43 EVYKTASDNLKTLLELPSNYEVLFLASATEIWERIIQNCV---------EK--KSFHCVNGSF-SKRFYEFAGELG---- 106 (362)
T ss_dssp HHHHHHHHHHHHHTTCCTTEEEEEESCHHHHHHHHHHHHC---------SS--EEEEEECSHH-HHHHHHHHHHTT----
T ss_pred HHHHHHHHHHHHHhCCCCCcEEEEeCCchHHHHHHHHhcc---------CC--cEEEEcCcHH-HHHHHHHHHHhC----
Confidence 4566788888888754 469999999999999999883 11 4454554444 42111 111111
Q ss_pred cccCCCCCCCceeccC-----CCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhc-CCEEEEecc
Q 017259 97 IRGFGPLLPGHLKVDF-----GDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKY-NILMIADEI 170 (374)
Q Consensus 97 ~~~~~~~~~~~~~~~~-----~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~-~i~li~Dea 170 (374)
..+..++. .|+++++ + .++++++++++++|++|.+.+ +++|.++|++| |+++|+|++
T Consensus 107 --------~~~~~v~~~~~~~~d~~~l~--~---~~~~~~v~~~~~~nptG~~~~----l~~i~~la~~~p~~~li~D~a 169 (362)
T 3ffr_A 107 --------REAYKEEAAFGKGFYPADIT--V---PADAEIICLTHNETSSGVSMP----VEDINTFRDKNKDALIFVDAV 169 (362)
T ss_dssp --------CEEEEEECCTTCCCCGGGCC--C---CTTCCEEEEESEETTTTEECC----HHHHTTSGGGSTTSEEEEECT
T ss_pred --------CCeEEEecCCCCCCCHHHHh--c---cCCccEEEEEcCCCCcceeCC----HHHHHHHHHhCCCCEEEEecc
Confidence 11111111 1677776 2 267899999999999999998 99999999999 999999999
Q ss_pred ccCCcccccCcccccCCCCCcEE--EecccccCCccchhhheeCHHHHhhcCCCCC---------------------CCC
Q 017259 171 QSGLARSGRMLASDWEEVRPDMV--ILGKALGGGVIPVSAVLADKEVMLCIQPGEH---------------------GST 227 (374)
Q Consensus 171 ~~~~~~~g~~~~~~~~~~~~d~~--s~sK~~~~G~~~~G~~~~~~~~~~~~~~~~~---------------------~~~ 227 (374)
|+.... .... .. .|++ +++|+++++. ++|+++.++++.+.+..... ...
T Consensus 170 ~~~~~~---~~~~--~~--~d~~~~s~~K~~~~~~-G~g~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~ 241 (362)
T 3ffr_A 170 SSLPYP---KFDW--TK--IDSVFFSVQKCFGLPA-GLGVWILNDRVIEKSKALLAKRKSIGTYHTIPSMLEKARVNQTP 241 (362)
T ss_dssp TTTTSS---CCCT--TS--CSEEEEETTSTTCCCS-CCEEEEEEHHHHHHHHHHHHTTCCCCSTTSHHHHHHHHTTTCCS
T ss_pred cccCCc---ccCh--hH--CcEEEEecccccCCCC-ceEEEEECHHHHHHhhhccccCCCCcccccHHHHHHHhhcCCCC
Confidence 973311 1111 11 4555 5669998555 56778888887666543211 114
Q ss_pred CCCCHHHHHHHHHHHHHHhhh---cHHHHHHHHHHHHHHHHHHHHHhCCCceeeE----EEEeeeEEEEeccCCCchhHH
Q 017259 228 FGGNPLASAVAIASLDVIRDE---KLAERSAHLGEELRQHLFKIQQQFPNYVKEV----RGRGLFNAVEFDKTALPVSAY 300 (374)
Q Consensus 228 ~~~~~~~~~aa~~al~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~----~~~g~~~~~~~~~~~~~~~~~ 300 (374)
++.+..++.++.++++.+..+ ++.++.+++.+++.+.|+++ |++.... ...+.++++.+++ +..
T Consensus 242 ~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~----~g~~~~~~~~~~~~~~~~~~~~~~-----~~~ 312 (362)
T 3ffr_A 242 ETPNAMNIFLLGKVTGDMLQISADGIRKQTEEKAALINTYIESS----KVFSFGVEDAKLRSMTTIVANTTM-----LPG 312 (362)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHC----SSEEESSSCGGGBCSSEEEEEESS-----CHH
T ss_pred CCchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHc----cCceeccCChhhcCCceEEEecCC-----CHH
Confidence 466777787888888866543 45566666666676666553 2221111 1235667777764 478
Q ss_pred HHHHHHHHCCeEeccC----CCCEEEEecCCCCCHHHHHHHHHHHHHHH
Q 017259 301 DICLKMKERGILAKPT----HDTIVRLTPPLSISSNELQEGSKALHDVL 345 (374)
Q Consensus 301 ~~~~~l~~~Gi~v~~~----~~~~lRi~~~~~~~~e~i~~~~~~l~~~~ 345 (374)
++.+.|.++||.++++ ..+++|++++...+++++++++++|++++
T Consensus 313 ~~~~~l~~~gi~~~~g~~~~~~~~iRis~~~~~~~e~i~~l~~~l~~~~ 361 (362)
T 3ffr_A 313 EINKILEPFDMAVGAGYGSKKETQIRIANFPAHSLEQVHKLVQTLKEKI 361 (362)
T ss_dssp HHHHHHGGGTEEEEECSGGGTTTEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHCCeEEecCccccCCCEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 9999999999999875 36899999998899999999999998764
No 196
>2ctz_A O-acetyl-L-homoserine sulfhydrylase; crystal, O-acetyl homoserine sulfhydrase, structural genomic structural genomics/proteomics initiative; HET: PLP; 2.60A {Thermus thermophilus} SCOP: c.67.1.3
Probab=99.90 E-value=7.6e-23 Score=193.72 Aligned_cols=288 Identities=18% Similarity=0.139 Sum_probs=188.8
Q ss_pred ccCcCCCCCcHHHHHHHHhcccCCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccC
Q 017259 13 LSSRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSC 92 (374)
Q Consensus 13 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~ 92 (374)
+.++.+.++...+++++|+++++.+..++++||++|++.+++.+ .++| |+|++..++||+.......+..
T Consensus 50 ~~y~~~~~~~~~~l~~~la~~~g~~~~v~~~sGt~A~~~~l~~~-----~~~g-----d~vi~~~~~~~~~~~~~~~~~~ 119 (421)
T 2ctz_A 50 NIYSRIMNPTVDVLEKRLAALEGGKAALATASGHAAQFLALTTL-----AQAG-----DNIVSTPNLYGGTFNQFKVTLK 119 (421)
T ss_dssp GSCBTTBCHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHH-----CCTT-----CEEEECSCCCHHHHHHHHTHHH
T ss_pred CcccCCCChHHHHHHHHHHHHhCCCceEEecCHHHHHHHHHHHH-----hCCC-----CEEEEeCCCchHHHHHHHHHHH
Confidence 44445667788999999999998888888899999999999987 4567 9999999999886554421110
Q ss_pred CccccccCCCCCCCceec-cCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEeccc
Q 017259 93 DNEAIRGFGPLLPGHLKV-DFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQ 171 (374)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~-~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~ 171 (374)
. ....+..+ +.+|+++++++++ ++++++++++++|++|.+.+ +++|.++|++||+++|+|++|
T Consensus 120 ~---------~g~~~~~~~~~~d~~~l~~~i~---~~~~~v~~~~~~n~~G~~~~----l~~i~~~a~~~g~~livD~~~ 183 (421)
T 2ctz_A 120 R---------LGIEVRFTSREERPEEFLALTD---EKTRAWWVESIGNPALNIPD----LEALAQAAREKGVALIVDNTF 183 (421)
T ss_dssp H---------TTCEEEECCTTCCHHHHHHHCC---TTEEEEEEESSCTTTCCCCC----HHHHHHHHHHHTCEEEEECGG
T ss_pred H---------cCCEEEEECCCCCHHHHHHhhc---cCCeEEEEECCCCCCCcccC----HHHHHHHHHHcCCEEEEECCc
Confidence 0 01234455 5568999999887 58999999999999999998 999999999999999999999
Q ss_pred cCCcccccCcccccCCCCCcEE--EecccccC-CccchhhheeC--H-HH----HhhcCCC---CCC-------------
Q 017259 172 SGLARSGRMLASDWEEVRPDMV--ILGKALGG-GVIPVSAVLAD--K-EV----MLCIQPG---EHG------------- 225 (374)
Q Consensus 172 ~~~~~~g~~~~~~~~~~~~d~~--s~sK~~~~-G~~~~G~~~~~--~-~~----~~~~~~~---~~~------------- 225 (374)
++++..+..+ +..+|++ |++|.+++ |. ++|+++.. + ++ .+.+.+. .++
T Consensus 184 ~~~g~~~~~~-----~~~~Di~~~s~~K~l~~~g~-~~G~~~~~~~~~~~~~~~~~~l~~~~~g~~g~~~~~~~~~~~~~ 257 (421)
T 2ctz_A 184 GMGGYLLRPL-----AWGAALVTHSLTKWVGGHGA-VIAGAIVDGGNFPWEGGRYPLLTEPQPGYHGLRLTEAFGELAFI 257 (421)
T ss_dssp GGGGTSCCGG-----GGTCSEEEEETTTTTTCSSC-CCCEEEEECSCSCCTTTTCHHHHSCBGGGTTBCHHHHHGGGHHH
T ss_pred ccccccCCcc-----ccCCeEEEECCcccccCCCC-cEEEEEEeccchhhcccchhhhccccchhhhhhhhhhcchhHHH
Confidence 4344333322 2346776 78899996 66 88887663 1 22 1222211 111
Q ss_pred ----------CCCCCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHhCCCceeeE----------------
Q 017259 226 ----------STFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEV---------------- 279 (374)
Q Consensus 226 ----------~~~~~~~~~~~aa~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~---------------- 279 (374)
.....+++.++++...++.+. ...++..++.+++.+.|++. |.+ ...
T Consensus 258 ~~~r~~~~~~~g~~~~~~~a~~~~~~l~~l~--~r~~~~~~~a~~l~~~L~~~----p~v-~~v~~p~~~~~~~~~~~~~ 330 (421)
T 2ctz_A 258 VKARVDGLRDQGQALGPFEAWVVLLGMETLS--LRAERHVENTLHLAHWLLEQ----PQV-AWVNYPGLPHHPHHDRAQK 330 (421)
T ss_dssp HHHHHTHHHHHCCCCCHHHHHHHHHHHTTHH--HHHHHHHHHHHHHHHHHHTC----TTE-EEEECTTSTTCTTHHHHHH
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHcCcchHH--HHHHHHHHhHHHHHHHHHhC----CCe-eEEECCCCCCCCCHHHHHH
Confidence 112446666666666555432 22444445666666666543 222 111
Q ss_pred ---EEEeeeEEEEeccCCCchhHHHHHHHHHHCCeEeccC---------------------------CCCEEEEecCCCC
Q 017259 280 ---RGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPT---------------------------HDTIVRLTPPLSI 329 (374)
Q Consensus 280 ---~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~---------------------------~~~~lRi~~~~~~ 329 (374)
++.+.++.|.++... .....+.+.|...++.++.+ .++.+|++++.
T Consensus 331 ~~~~~~g~ivsf~l~~~~--~~~~~~~~~l~~~~~~~~~G~~~sl~~~~~~~~h~~~~~~~~~~~g~~~~~vRlS~g~-- 406 (421)
T 2ctz_A 331 YFKGKPGAVLTFGLKGGY--EAAKRFISRLKLISHLANVGDTRTLAIHPASTTHSQLSPEEQAQAGVSPEMVRLSVGL-- 406 (421)
T ss_dssp HHTTCCCSEEEEEETTHH--HHHHHHHHTCSSSEECSCCCCSSCEEECGGGTTTTTSCHHHHHHHTCCTTEEEEECCS--
T ss_pred hccCCCceEEEEEeCCCH--HHHHHHHHhCCcceecccCCCCCceeeCCcccccccCCHHHHHhcCCCCCeEEEEeCC--
Confidence 356788888886420 13444555544333333211 14799999554
Q ss_pred CHHHHHHHHHHHHHHH
Q 017259 330 SSNELQEGSKALHDVL 345 (374)
Q Consensus 330 ~~e~i~~~~~~l~~~~ 345 (374)
++++.+++.|++++
T Consensus 407 --e~~~~li~~l~~al 420 (421)
T 2ctz_A 407 --EHVEDLKAELKEAL 420 (421)
T ss_dssp --SCHHHHHHHHHHHT
T ss_pred --CCHHHHHHHHHHHh
Confidence 57777788777765
No 197
>3h7f_A Serine hydroxymethyltransferase 1; cytoplasm, one-carbon metabolism, pyridoxal phosphate, structural genomics; HET: LLP; 1.50A {Mycobacterium tuberculosis}
Probab=99.90 E-value=2.6e-22 Score=191.59 Aligned_cols=296 Identities=15% Similarity=0.131 Sum_probs=186.3
Q ss_pred HHHH-HHHhcccCCCeEEe-cCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccc--cccCCcccccc
Q 017259 24 PVFA-ERLTSMFGYDMVLP-MNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAI--SMSCDNEAIRG 99 (374)
Q Consensus 24 ~~l~-~~l~~~~~~~~~~~-~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~--~~~~~~~~~~~ 99 (374)
++++ +++++++|.+.+.+ ++||++|++.+++++ .++| |+|++.+++|+++..... ...+. .+...
T Consensus 93 e~~a~~~la~~~g~~~~~v~~~sGs~a~~~a~~~~-----~~~G-----d~Vl~~~~~~~~~~~~~~~~~~~g~-~~~~~ 161 (447)
T 3h7f_A 93 ENLARDRAKALFGAEFANVQPHSGAQANAAVLHAL-----MSPG-----ERLLGLDLANGGHLTHGMRLNFSGK-LYENG 161 (447)
T ss_dssp HHHHHHHHHHHHTCSEEECCCSSHHHHHHHHHHHH-----CCTT-----CEEEEECGGGTCCGGGTCTTSHHHH-SSEEE
T ss_pred HHHHHHHHHHHcCCCceEEEeCCHHHHHHHHHHHh-----cCCC-----CEEEecCcccccccchhhhhhhcCC-eeEEE
Confidence 5566 88999889988777 999999999999988 5677 999999999877322211 11110 01100
Q ss_pred CCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEecccc-CCcccc
Q 017259 100 FGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQS-GLARSG 178 (374)
Q Consensus 100 ~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~-~~~~~g 178 (374)
..+...+. -..|++++++++++. ++++++++.+.++++. + +++|.++|++||++||+||+|+ |+...|
T Consensus 162 ~~~~~~~~---~~~d~~~l~~~i~~~--~~~~i~~~~~~~~~~~--~----l~~i~~l~~~~g~lli~Dea~~~g~~~~g 230 (447)
T 3h7f_A 162 FYGVDPAT---HLIDMDAVRATALEF--RPKVIIAGWSAYPRVL--D----FAAFRSIADEVGAKLLVDMAHFAGLVAAG 230 (447)
T ss_dssp EECCCTTT---CSCCHHHHHHHHHHH--CCSEEEEECSSCCSCC--C----HHHHHHHHHHHTCEEEEECTTTHHHHHTT
T ss_pred EcCcCccc---CCcCHHHHHHHHHhc--CCeEEEEcCCCCCCcc--C----HHHHHHHHHHcCCEEEEECCchhhhhcCC
Confidence 00111000 013899999999754 4567777554444433 4 9999999999999999999975 443333
Q ss_pred cCcccccCCCCCcEE--EecccccCCccchhhheeCHHHHhhcCCCCCCCCCC-CCHHHHHHHHHHHHHHhh---hcHHH
Q 017259 179 RMLASDWEEVRPDMV--ILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFG-GNPLASAVAIASLDVIRD---EKLAE 252 (374)
Q Consensus 179 ~~~~~~~~~~~~d~~--s~sK~~~~G~~~~G~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~aa~~al~~~~~---~~~~~ 252 (374)
..... .. ..|++ |+||+++ |+ ++|++++++++.+.+.......+++ ++...++++.+++..+.. +++.+
T Consensus 231 ~~~~~--~~-~~di~~~s~sK~l~-G~-~gG~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~ 305 (447)
T 3h7f_A 231 LHPSP--VP-HADVVSTTVHKTLG-GG-RSGLIVGKQQYAKAINSAVFPGQQGGPLMHVIAGKAVALKIAATPEFADRQR 305 (447)
T ss_dssp SSCCS--TT-TCSEEEEESSGGGC-CC-SCEEEEECGGGHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHTTSHHHHHHHH
T ss_pred CCCCC--CC-CCcEEEecCCcCCC-CC-CeEEEEECHHHHHHHhhhcCCcccCCccHHHHHHHHHHHHHhhCHHHHHHHH
Confidence 22111 11 23554 7789985 66 8899999988777765432222332 334445555555555433 24667
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCceeeE-EEEeeeEEEEeccCCCchhHHHHHHHHHHCCeEec----cC------CCCEE
Q 017259 253 RSAHLGEELRQHLFKIQQQFPNYVKEV-RGRGLFNAVEFDKTALPVSAYDICLKMKERGILAK----PT------HDTIV 321 (374)
Q Consensus 253 ~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~----~~------~~~~l 321 (374)
++.++.+++.+.|++.....+++.... ...+.++++++.... .+...+.+.|.++||.+. +. .++++
T Consensus 306 ~~~~~~~~l~~~L~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~GI~v~~~~i~~~~~~p~~~~~l 383 (447)
T 3h7f_A 306 RTLSGARIIADRLMAPDVAKAGVSVVSGGTDVHLVLVDLRDSP--LDGQAAEDLLHEVGITVNRNAVPNDPRPPMVTSGL 383 (447)
T ss_dssp HHHHHHHHHHHHHTSHHHHHTTCEEGGGSCSSSEEEEECTTSS--CCHHHHHHHHHHTTEECBC-------------CEE
T ss_pred HHHHHHHHHHHHHHhccccCCCeEEecCCCCCCEEEEEcCCCC--CCHHHHHHHHHHCCeEEecccCCCCCCCCCCCCce
Confidence 777888888888766511111111101 123456676664321 145667777777899988 33 35789
Q ss_pred EEecCCC----CCHHHHHHHHHHHHHHHhccC
Q 017259 322 RLTPPLS----ISSNELQEGSKALHDVLELDL 349 (374)
Q Consensus 322 Ri~~~~~----~~~e~i~~~~~~l~~~~~~~~ 349 (374)
||+++.. .++++++++++.|+++++ ..
T Consensus 384 Rig~~~~~~~~~~~eei~~~~~~l~~~l~-~~ 414 (447)
T 3h7f_A 384 RIGTPALATRGFGDTEFTEVADIIATALA-TG 414 (447)
T ss_dssp EEECHHHHHHTCCHHHHHHHHHHHHHHHH-SG
T ss_pred eccCHHHhhCCCCHHHHHHHHHHHHHHHh-cc
Confidence 9987654 679999999999999997 54
No 198
>4h51_A Aspartate aminotransferase; ssgcid, structural genomics, seattle struc genomics center for infectious disease, aspartate aminotran transferase; HET: LLP; 1.85A {Leishmania major}
Probab=99.89 E-value=1.8e-22 Score=189.75 Aligned_cols=305 Identities=11% Similarity=0.073 Sum_probs=188.8
Q ss_pred CCCcHHHHHHHHhccc-CC------CeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCccccccccc
Q 017259 19 YNDKFPVFAERLTSMF-GY------DMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMS 91 (374)
Q Consensus 19 ~~~~~~~l~~~l~~~~-~~------~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~ 91 (374)
+.....+|.+.+++++ |. ...+.|.+||.|+..++..+.... ..+| |+|++++|+|..+.......+
T Consensus 85 p~~G~p~lr~aia~~~~g~~~~~~~~~~~qt~ggtga~~~a~~~l~~~~-~~pg-----d~V~ip~P~w~~y~~i~~~aG 158 (420)
T 4h51_A 85 PISGYQPFIDEAVKIIYGNTVELENLVAVQTLSGTGAVSLGAKLLTRVF-DAET-----TPIYLSDPTWPNHYGVVKAAG 158 (420)
T ss_dssp CTTCCHHHHHHHHHHHHC---CGGGEEEEEEEHHHHHHHHHHHHHTTTS-CTTT-----SCEEEEESCCTHHHHHHHHTT
T ss_pred CcCChHHHHHHHHHHhcCCCccccccceeeecCchHHHHHHHHHHHHhc-CCCC-----CEEEEecCCchhHHHHHHHcC
Confidence 3445556666666543 21 234668999999998888775432 5677 999999999976665555544
Q ss_pred CCccccccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEeccc
Q 017259 92 CDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQ 171 (374)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~ 171 (374)
..+.....+... .... .|.+.+.+.++..++++++++.++++||||... +++.+++|.++|+++++++|+||+|
T Consensus 159 ~~~V~~~~~~~~-~~~~----~d~~~~~~~l~~~~~~~~vll~~~p~NPtG~~~-~~~~~~~i~~~~~~~~~~~~~D~~Y 232 (420)
T 4h51_A 159 WKNICTYAYYDP-KTVS----LNFEGMKKDILAAPDGSVFILHQCAHNPTGVDP-SQEQWNEIASLMLAKHHQVFFDSAY 232 (420)
T ss_dssp CCCEEEEECEEG-GGTE----ECHHHHHHHHHHSCSSCEEEEESSSCTTTCCCC-CHHHHHHHHHHHHHHTCEEEEEESC
T ss_pred CeEEEeeccccc-cccC----CCHHHHHHHHhccCCCcEEEEeCCCCCCCCCCC-CHHHHHHHHHHHHhcCceEeeehhh
Confidence 332211000000 0000 167888888887777888999999999999777 9999999999999999999999999
Q ss_pred cCCcccccC---cccc-cCCCCCc---EEEeccccc-CCccchhhheeCHHHHhh-------cCCCCCCCCCCCCHHHHH
Q 017259 172 SGLARSGRM---LASD-WEEVRPD---MVILGKALG-GGVIPVSAVLADKEVMLC-------IQPGEHGSTFGGNPLASA 236 (374)
Q Consensus 172 ~~~~~~g~~---~~~~-~~~~~~d---~~s~sK~~~-~G~~~~G~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~ 236 (374)
.+|.+.+.. +... ..+.... +.||||.++ .|+ |+||+++..+..+. +.........+++..++.
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~G~-RvG~~~~~~~~~~~~~~~~~~l~~~~r~~~s~~p~~~a~ 311 (420)
T 4h51_A 233 QGYASGSLDTDAYAARLFARRGIEVLLAQSFSKNMGLYSE-RAGTLSLLLKDKTKRADVKSVMDSLIREEYTCPPAHGAR 311 (420)
T ss_dssp TTTTTSCHHHHTHHHHHHHHTTCCCEEEEECTTTSCCGGG-CEEEEEEECSCHHHHHHHHHHHHHHHHTTTSSCCHHHHH
T ss_pred hhhccCCcccchHHHHhHHhhCceEEEEeccccccccccC-ceEEEEecccCHHHHHHHHHHHHHhhhcccCcchHHHHH
Confidence 988654321 1111 1112222 349999999 599 99998764332222 211112233455666666
Q ss_pred HHHHHHHH------Hhh--hcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCchhHHHHHHHHHH
Q 017259 237 VAIASLDV------IRD--EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKE 308 (374)
Q Consensus 237 aa~~al~~------~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~ 308 (374)
++...+.. ++. +.+.++++++++.+.+.|++++... ....-.+..|.|.+..+ +. +.++.|.+
T Consensus 312 ~~~~~l~d~~l~~~~~~~~~~m~~r~~~~R~~l~~~L~~~g~~~-~~~~i~~q~GmF~~~gl-------s~-e~v~~L~e 382 (420)
T 4h51_A 312 LAHLILSNNELRKEWEAELSAMAERIRTMRRTVYDELLRLQTPG-SWEHVINQIGMFSFLGL-------SK-AQCEYCQN 382 (420)
T ss_dssp HHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSS-CCTHHHHCCSSEEECCC-------CH-HHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC-CCCeecCCCceEEecCc-------CH-HHHHHHHh
Confidence 65555432 111 1344555556666666665543110 00001233466655322 22 44678889
Q ss_pred CCeEeccCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhccCCc
Q 017259 309 RGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVLELDLPK 351 (374)
Q Consensus 309 ~Gi~v~~~~~~~lRi~~~~~~~~e~i~~~~~~l~~~~~~~~~~ 351 (374)
+||++.+++ ||++. ..+++.+++++++|.++++ .+.+
T Consensus 383 ~~Vy~~~~g----Ris~A-gl~~~ni~~~a~aI~~vvr-~i~r 419 (420)
T 4h51_A 383 HNIFITVSG----RANMA-GLTHETALMLAQTINDAVR-NVNR 419 (420)
T ss_dssp TTEECCTTC----EEEGG-GCCHHHHHHHHHHHHHHHC-----
T ss_pred CCEEEcCCC----EEEec-cCCHHHHHHHHHHHHHHHH-Hhhc
Confidence 999998875 99854 3588999999999999998 6543
No 199
>3bb8_A CDP-4-keto-6-deoxy-D-glucose-3-dehydrase; aspartate aminotransferase fold, oxidoreductase; HET: PLP; 2.35A {Yersinia pseudotuberculosis} PDB: 3bcx_A
Probab=99.89 E-value=8e-22 Score=187.69 Aligned_cols=308 Identities=15% Similarity=0.117 Sum_probs=194.2
Q ss_pred hHHHHHHHhccccCcCCCCCcHHHHHHHHhcccCCCeEEecCChHHHHHHHHHHHHHcc----cccccCCCCccEEEEec
Q 017259 2 KALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWG----YVKKKFSIDEAIIVSCC 77 (374)
Q Consensus 2 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~gs~a~~~al~~~~~~~----~~~~G~~~~~~~vi~~~ 77 (374)
+++.+++....+ ++.+...++++.++++++.+++++++||++|++.+++++..+. ...+| ++|++..
T Consensus 47 ~a~~~~~~~~~~----~~~~~~~~l~~~la~~~g~~~~i~~~sGt~a~~~al~~l~~~~~~~~~~~~g-----d~Vi~~~ 117 (437)
T 3bb8_A 47 QLMVEASLDGWL----TTGRFNDAFEKKLGEYLGVPYVLTTTSGSSANLLALTALTSPKLGVRALKPG-----DEVITVA 117 (437)
T ss_dssp HHHHHHHHHCCC----BSCHHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHTTCGGGGGGSCCTT-----CEEEECS
T ss_pred HHHHHHHHcCCc----CCChHHHHHHHHHHHHHCCCcEEEeCCHHHHHHHHHHHhhhcccccccCCCc-----CEEEECC
Confidence 455555554433 4467788999999999999999999999999999998873111 13455 8999999
Q ss_pred cCCCCcccccccccCCccccccCCCCCC-CceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHH
Q 017259 78 GCFHGRTLAAISMSCDNEAIRGFGPLLP-GHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRD 156 (374)
Q Consensus 78 ~~yhg~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~ 156 (374)
++|++....+...+....+ .+... +.. -|+++++++++ ++++++++.+. +|...+ +++|.+
T Consensus 118 ~~~~~~~~~~~~~g~~~~~----v~~~~~~~~----~d~~~l~~~i~---~~~~~v~~~~~---~g~~~~----~~~i~~ 179 (437)
T 3bb8_A 118 AGFPTTVNPTIQNGLIPVF----VDVDIPTYN----VNASLIEAAVS---DKTKAIMIAHT---LGNLFD----LAEVRR 179 (437)
T ss_dssp SSCHHHHHHHHHTTCEEEE----CCEETTTTE----ECGGGHHHHCC---TTEEEEEEECG---GGCCCC----HHHHHH
T ss_pred CCcHHHHHHHHHcCCEEEE----EeccCccCC----cCHHHHHHhcC---CCCeEEEEeCC---CCChhc----HHHHHH
Confidence 9998876555433221111 11100 011 17888988886 47888888642 344455 999999
Q ss_pred HHHhcCCEEEEecccc-CCcccccCcccccCCCCCcEE--Eec--ccccCCccchhhheeCHHHHhh----cCCCC----
Q 017259 157 LCSKYNILMIADEIQS-GLARSGRMLASDWEEVRPDMV--ILG--KALGGGVIPVSAVLADKEVMLC----IQPGE---- 223 (374)
Q Consensus 157 l~~~~~i~li~Dea~~-~~~~~g~~~~~~~~~~~~d~~--s~s--K~~~~G~~~~G~~~~~~~~~~~----~~~~~---- 223 (374)
+|++||+++|+||+|+ |....+ ...+..+|++ ||+ |.++ |. ++|+++.+++.+.. +....
T Consensus 180 l~~~~~~~li~D~a~~~g~~~~~-----~~~~~~~d~~~~s~~~~k~l~-~g-~gg~~~~~~~~~~~~~~~~~~~~~~~~ 252 (437)
T 3bb8_A 180 VADKYNLWLIEDCCDALGSTYDG-----KMAGTFGDIGTVSFYPAKHIT-MG-EGGAVFTQSAELKSIIESFRDWGRDCY 252 (437)
T ss_dssp HHHHHTCEEEEECTTCTTCEETT-----EETTSSSSEEEEECSTTSSSC-CS-SCEEEEESCHHHHHHHHHHHBTTBCC-
T ss_pred HHHHcCCEEEEECccccCceECC-----eecccccCEEEEECcCCcCCC-CC-CeEEEEeCCHHHHHHHHHHHHhCcccc
Confidence 9999999999999998 332222 1223335764 554 4553 44 67888887543322 11110
Q ss_pred --------------------------------CCCCCCCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHH-
Q 017259 224 --------------------------------HGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQ- 270 (374)
Q Consensus 224 --------------------------------~~~~~~~~~~~~~aa~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~- 270 (374)
.+.++..+.+.+++++++++.+ +++.++.+++.+++.+.|+++..
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~l~~l~~~--~~~~~~~~~~~~~l~~~L~~~~g~ 330 (437)
T 3bb8_A 253 CAPGCDNTCKKRFGQQLGSLPFGYDHKYTYSHLGYNLKITDMQAACGLAQLERI--EEFVEKRKANFKYLKDALQSCADF 330 (437)
T ss_dssp ---------------CCSCCCTTCCGGGCBCSCCCBCCCBHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHGGGGTTT
T ss_pred cccccccccccccccccccccccccccccccccCcccCCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhhccCCc
Confidence 1122234677777788777654 34566667777788777766421
Q ss_pred h-CCCceeeEEEEeeeEEEEeccCCCchhHHHHHHHHHHCCeEeccCCC----------------------------CEE
Q 017259 271 Q-FPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTHD----------------------------TIV 321 (374)
Q Consensus 271 ~-~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~----------------------------~~l 321 (374)
. +|.......+....+.+.++.. .+.+..++.+.|.++||.+++... +.+
T Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~L~~~GI~v~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~l 409 (437)
T 3bb8_A 331 IELPEATENSDPSWFGFPITLKED-SGVSRIDLVKFLDEAKVGTRLLFAGNLTRQPYFHDVKYRVVGELTNTDRIMNQTF 409 (437)
T ss_dssp EECCCCCTTEECCCSSEEEEECGG-GSSCHHHHHHHHHHTTBCCBCCTTSSGGGSGGGSSCCCEECSCCHHHHHHHHHEE
T ss_pred cccCCCCCCCceeeEEEEEEECCc-CcCcHHHHHHHHHHCCCceeccCCcccccCchhhccCccccCCCcHHHHHhcCEE
Confidence 1 1100000111111122223311 011578999999999999876421 149
Q ss_pred EEecCCCCCHHHHHHHHHHHHHHHh
Q 017259 322 RLTPPLSISSNELQEGSKALHDVLE 346 (374)
Q Consensus 322 Ri~~~~~~~~e~i~~~~~~l~~~~~ 346 (374)
|++++..+|++|+++++++|+++++
T Consensus 410 rl~~~~~~t~~di~~i~~~l~~~~~ 434 (437)
T 3bb8_A 410 WIGIYPGLTHDHLDYVVSKFEEFFG 434 (437)
T ss_dssp EECCSTTCCHHHHHHHHHHHHHHTT
T ss_pred EecCCCCCCHHHHHHHHHHHHHHHc
Confidence 9999999999999999999998875
No 200
>3ri6_A O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate, gamma-elimination, direct sulfhydrylation, CY metabolism, protein thiocarboxylate, TR; 2.20A {Wolinella succinogenes}
Probab=99.89 E-value=1.2e-22 Score=192.08 Aligned_cols=289 Identities=17% Similarity=0.135 Sum_probs=182.8
Q ss_pred cccCcCCCCCcHHHHHHHHhcccCCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCccccccccc
Q 017259 12 TLSSRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMS 91 (374)
Q Consensus 12 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~ 91 (374)
.+.++.+.++...+|++++++++|.+..++++||++|+..+++.+ .++| |+|++.++.|++.........
T Consensus 73 ~~~y~r~~~p~~~~le~~lA~l~g~~~~v~~~sG~~Ai~~al~al-----~~~G-----d~Vi~~~~~y~~~~~~~~~~~ 142 (430)
T 3ri6_A 73 GHVYSRSSNPTVEDLEQRLKNLTGALGVLALGSGMAAISTAILTL-----ARAG-----DSVVTTDRLFGHTLSLFQKTL 142 (430)
T ss_dssp -------CCHHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHH-----CCTT-----CEEEEETTCCHHHHHHHHTHH
T ss_pred CccccCCCCHHHHHHHHHHHHHHCCCcEEEECCHHHHHHHHHHHH-----hCCC-----CEEEEcCCCchhHHHHHHHHH
Confidence 344556778899999999999999999999999999999999988 5677 999999999977554221110
Q ss_pred CCccccccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEeccc
Q 017259 92 CDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQ 171 (374)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~ 171 (374)
.. ....+..++.+|+++++++++ ++++++++++++|++|.+.+ +++|.++|++||+++|+|++|
T Consensus 143 ~~---------~G~~~~~v~~~d~~~l~~ai~---~~t~~v~~e~p~NptG~~~d----l~~i~~la~~~g~~livD~a~ 206 (430)
T 3ri6_A 143 PS---------FGIEVRFVDVMDSLAVEHACD---ETTKLLFLETISNPQLQVAD----LEALSKVVHAKGIPLVVDTTM 206 (430)
T ss_dssp HH---------TTCEEEEECTTCHHHHHHHCC---TTEEEEEEESSCTTTCCCCC----HHHHHHHHHTTTCCEEEECTT
T ss_pred HH---------cCCEEEEeCCCCHHHHHHhhC---CCCeEEEEECCCCCCCeecC----HHHHHHHHHHcCCEEEEECCC
Confidence 00 113455666679999999887 58999999999999999998 999999999999999999999
Q ss_pred cCCcccccCcccccCCCCCcEEEecccccC-Cccchhhhee--CH-HH------------------HhhcCC-CCCCCCC
Q 017259 172 SGLARSGRMLASDWEEVRPDMVILGKALGG-GVIPVSAVLA--DK-EV------------------MLCIQP-GEHGSTF 228 (374)
Q Consensus 172 ~~~~~~g~~~~~~~~~~~~d~~s~sK~~~~-G~~~~G~~~~--~~-~~------------------~~~~~~-~~~~~~~ 228 (374)
+.... ......+.+..+.|++|.++| |. .+|+++. .+ .+ ....+. .......
T Consensus 207 ~~~~~----~~~~~~g~div~~S~sK~l~g~g~-~~gG~vv~~~~~~~~~~~~~~~l~~~~g~~~~i~~~~~~~~~~~g~ 281 (430)
T 3ri6_A 207 TPPYL----LEAKRLGVDIEVLSSTKFISGGGT-SVGGVLIDHGLFEWKSLPSLAPYYAKAGPMAFLYKARKEVFQNLGP 281 (430)
T ss_dssp SCTTT----CCGGGGTCSEEEEECCCEEETTEE-ECCEEEEECSCSCGGGSTTTHHHHHHHGGGHHHHHHHHTHHHHHCC
T ss_pred ccccc----CChHHcCCEEEEECCcccccCCCC-ceEEEEEECChHHhhhccchhhhhhhhchhhHHHHHHHHHHHhcCC
Confidence 73211 111223333334588899986 44 4455433 21 11 111110 0011122
Q ss_pred CCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEE-----------------EEee-eEEEEe
Q 017259 229 GGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVR-----------------GRGL-FNAVEF 290 (374)
Q Consensus 229 ~~~~~~~~aa~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-----------------~~g~-~~~~~~ 290 (374)
..+++.+..++..++.+.. ..++..++..++.+.|++ .| .+..+. +.|. +++|++
T Consensus 282 ~~~~~~a~l~l~~l~~l~~--r~~~~~~na~~la~~L~~----~p-~v~~V~~P~l~~~p~~~~~~~~~g~Gg~~lsf~l 354 (430)
T 3ri6_A 282 SLSPHNAYLQSLGLETMAL--RIERSCQNAQELAHWLLS----IP-QVKCVNHPSLPDSPFYAIAKRQFRYAGSILTFEL 354 (430)
T ss_dssp CCCHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHTT----CT-TCEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEC
T ss_pred CCCHHHHHHHHhhhhhHHH--HHHHHHHHHHHHHHHHhC----CC-CccEEECCCCCCCccHHHHHHhCCCCceEEEEEE
Confidence 3466666555555554422 244555566666665543 23 222221 2256 999998
Q ss_pred ccCCCchhHHHHHHHHHHCCeEeccC---------------------------CCCEEEEecCCCCCHHHHHHHHHHHHH
Q 017259 291 DKTALPVSAYDICLKMKERGILAKPT---------------------------HDTIVRLTPPLSISSNELQEGSKALHD 343 (374)
Q Consensus 291 ~~~~~~~~~~~~~~~l~~~Gi~v~~~---------------------------~~~~lRi~~~~~~~~e~i~~~~~~l~~ 343 (374)
++. ....+|.+.|...++.++.+ .++.||++++ .|+.+.+++.|++
T Consensus 355 ~~~---~~~~~~~~~l~~~~~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~g~~~~liRlsvG----~E~~~dl~~dl~~ 427 (430)
T 3ri6_A 355 ESK---EASYRFMDALKLIRRATNIHDNKSLILSPYHVIYALNSHEERLKLEISPAMMRLSVG----IEEIEDLKEDILQ 427 (430)
T ss_dssp SSH---HHHHHHHHHCSSSEECSCCSCSSCEEECTGGGC---------CGGGSCTTEEEEECC----SSCHHHHHHHHHH
T ss_pred CCH---HHHHHHHHhCCcceecCCCCCCCceeeCCcccccccCCHHHHHhcCCCCCeEEEEec----cCCHHHHHHHHHH
Confidence 732 25666777766554433221 2578999954 3555666677766
Q ss_pred HH
Q 017259 344 VL 345 (374)
Q Consensus 344 ~~ 345 (374)
++
T Consensus 428 al 429 (430)
T 3ri6_A 428 AL 429 (430)
T ss_dssp HH
T ss_pred hh
Confidence 65
No 201
>2qma_A Diaminobutyrate-pyruvate transaminase and L-2,4- diaminobutyrate decarboxylase; structural genomics, APC91511.1, glutamate decarboxylase; HET: MSE; 1.81A {Vibrio parahaemolyticus}
Probab=99.89 E-value=1.4e-21 Score=189.08 Aligned_cols=303 Identities=14% Similarity=0.096 Sum_probs=185.6
Q ss_pred HHHHHhcccCC---CeEEecCChHHHHHHHHHHHHHcccc--------cccCCC--CccEEEEeccCCCCcccccccccC
Q 017259 26 FAERLTSMFGY---DMVLPMNTGAEGVETALKLARKWGYV--------KKKFSI--DEAIIVSCCGCFHGRTLAAISMSC 92 (374)
Q Consensus 26 l~~~l~~~~~~---~~~~~~~~gs~a~~~al~~~~~~~~~--------~~G~~~--~~~~vi~~~~~yhg~~~~~~~~~~ 92 (374)
+.++|++++|. +.+++|+|||+|++.++.+++.+... .+|.+. ++.+|++..++|+.. ..+....+
T Consensus 145 ~~~~la~~~g~~~~~~~~~t~ggt~a~~~al~~ar~~~~~~~~~~~~~~~G~~~~~g~~~v~~s~~~h~s~-~~~~~~~g 223 (497)
T 2qma_A 145 VVNWLCDKYDLSEKADGIFTSGGTQSNQMGLMLARDWIADKLSGHSIQKLGLPDYADKLRIVCSKKSHFTV-QKSASWMG 223 (497)
T ss_dssp HHHHHHHHTTCCTTCEEEEESSHHHHHHHHHHHHHHHHHHHHHCCCHHHHCSCGGGGGEEEEEETTSCTHH-HHHHHHTT
T ss_pred HHHHHHHHhCCCCCCCeEEcCCchHHHHHHHHHHHHHHHHhhcccchhhcccccccCCeEEEECCCchHHH-HHHHHHcC
Confidence 45558888876 68999999999999999987542100 133211 122777777665443 33322222
Q ss_pred CccccccCCCCCCCceeccCC-----CHHHHHHHHHhc---CCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCE
Q 017259 93 DNEAIRGFGPLLPGHLKVDFG-----DITALEKIFKES---GDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNIL 164 (374)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~-----d~~~le~~l~~~---~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~ 164 (374)
.+. ..+..++.+ |+++|+++|++. +.++.+++++.+.+++|.+.+ +++|.++|++||++
T Consensus 224 ~g~---------~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~vv~~~~~~~tG~~~~----l~~I~~l~~~~~~~ 290 (497)
T 2qma_A 224 LGE---------KAVMTVDANADGTMDITKLDEVIAQAKAEGLIPFAIVGTAGTTDHGAIDD----LDFIADMAVKHDMW 290 (497)
T ss_dssp SCG---------GGEEEECBCTTSSBCGGGHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCC----HHHHHHHHHHHTCE
T ss_pred CCc---------ccEEEEecCCCCcCCHHHHHHHHHHHHHCCCcceEEEEcCCCCCCCCCCC----HHHHHHHHHHcCCE
Confidence 110 012223332 789999998753 122557888778888998888 99999999999999
Q ss_pred EEEeccccCCcccccCcccccCCC-CCcEEEe--cccccCCccchhhheeCH-HHHhhcCCCCCC----CCCCCCHHH--
Q 017259 165 MIADEIQSGLARSGRMLASDWEEV-RPDMVIL--GKALGGGVIPVSAVLADK-EVMLCIQPGEHG----STFGGNPLA-- 234 (374)
Q Consensus 165 li~Dea~~~~~~~g~~~~~~~~~~-~~d~~s~--sK~~~~G~~~~G~~~~~~-~~~~~~~~~~~~----~~~~~~~~~-- 234 (374)
+++|++|+++..... +.....++ .+|++++ +|++++++ ++|+++.++ ..++.+...... .+..++...
T Consensus 291 l~vD~a~~~~~~~~~-~~~~~~gi~~~D~i~~s~hK~l~~p~-~~G~l~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~ 368 (497)
T 2qma_A 291 MHVDGAYGGALILSS-HKSRLKGVERAHSISVDFHKLFYQTI-SCGALLVNDKSNFKFLLHHADYLNREHDELPNLVDKS 368 (497)
T ss_dssp EEEEETTGGGGGGST-TGGGGTTGGGCSEEEEETTTTTCCCS-SCEEEEESCGGGGGGGCC-------------------
T ss_pred EEEehhhhHHHHhCc-chHhhcCcccCCEEEEcchhccCCCc-ceEEEEEeCHHHHHHhcCCchhcCCccccCCCccccC
Confidence 999999997644333 22223344 6677755 79999888 999988764 334444321000 000011111
Q ss_pred --------HHHHHHHHHHHhhh---cHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCc--hhHHH
Q 017259 235 --------SAVAIASLDVIRDE---KLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALP--VSAYD 301 (374)
Q Consensus 235 --------~~aa~~al~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~--~~~~~ 301 (374)
..+..++++.+..+ ++.++..++.+++.+.|++. |++....++...+++|.+...... ....+
T Consensus 369 ~~~~r~~~al~~~~~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~----~~~~~~~~~~~~~v~f~~~~~~~~~~~l~~~ 444 (497)
T 2qma_A 369 IATTKRFDALKVFMTMQNVGPKALGDMYDHLLAQTLEVADMIRTN----DQFELLAEPSLSTVLFRATHETADLDELNKA 444 (497)
T ss_dssp -CCSCCCTHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHTC----TTEEECSCCSSSEEEEEECCSSSCHHHHHHH
T ss_pred CCCCCchhHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhhC----CCeEEEcCCCceEEEEEEcCCccCHHHHHHH
Confidence 12233445544333 45566666667776666543 222211233456777776432100 11346
Q ss_pred HHHHHHHCCeEeccC----CCCEEEEec-CCCCCHHHHHHHHHHHHHHHhccC
Q 017259 302 ICLKMKERGILAKPT----HDTIVRLTP-PLSISSNELQEGSKALHDVLELDL 349 (374)
Q Consensus 302 ~~~~l~~~Gi~v~~~----~~~~lRi~~-~~~~~~e~i~~~~~~l~~~~~~~~ 349 (374)
+.+.|.++|+.+.+. +.+++|+++ +..++++++++++++|+++++ ++
T Consensus 445 l~~~l~~~G~~~~~~~~~~g~~~lRis~~~~~~t~edi~~~~~~l~~~~~-~~ 496 (497)
T 2qma_A 445 LRLEALTRGIAVLGETIVDGKTALKFTILNPCLTTSDFESLLSKINMLAV-EL 496 (497)
T ss_dssp HHHHHHHHTSCBCEEEEETTEEEEEEECCCTTCCHHHHHHHHHHHHHHHH-HC
T ss_pred HHHHHHhCCCEEEEeeEECCEEEEEEEecCCCCCHHHHHHHHHHHHHHHH-hh
Confidence 778889999888642 346899997 788999999999999999987 54
No 202
>3gbx_A Serine hydroxymethyltransferase; structural genomics, IDP01011, serine hydroxymethyltransfera salmonella typhimurium.; HET: MSE; 1.80A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1dfo_A* 3g8m_A* 1eqb_A*
Probab=99.89 E-value=7.5e-22 Score=186.64 Aligned_cols=288 Identities=13% Similarity=0.114 Sum_probs=177.0
Q ss_pred HHHHHhcccCCCeE-EecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCccccccc--ccCCccccccCCC
Q 017259 26 FAERLTSMFGYDMV-LPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAIS--MSCDNEAIRGFGP 102 (374)
Q Consensus 26 l~~~l~~~~~~~~~-~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~--~~~~~~~~~~~~~ 102 (374)
.++++++.++.+.. ++++||++|++.+++.+ .++| |+|++..++|++....... ..+.......+ +
T Consensus 81 ~~~~la~~~~~~~~~v~~~sGs~a~~~a~~~~-----~~~g-----d~v~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~ 149 (420)
T 3gbx_A 81 AIDRAKELFGADYANVQPHSGSQANFAVYTAL-----LQPG-----DTVLGMNLAQGGHLTHGSPVNFSGKLYNIVPY-G 149 (420)
T ss_dssp HHHHHHHHHTCSEEECCCSSHHHHHHHHHHHH-----CCTT-----CEEEEEEEC------------CHHHHSEEEEE-E
T ss_pred HHHHHHHHhCCCCceeEecCcHHHHHHHHHHh-----cCCC-----CEEEecchhhcceeccchhhhhcccceeEEec-c
Confidence 33678888887754 44678899999999888 5677 9999999997653311111 11100000000 0
Q ss_pred CCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEecccc-CCcccccCc
Q 017259 103 LLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQS-GLARSGRML 181 (374)
Q Consensus 103 ~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~-~~~~~g~~~ 181 (374)
...--..|+++|+++++++ ++++++++++++ |...+ +++|.++|++||++||+||+|+ ++.+.+...
T Consensus 150 ----~~~~~~~d~~~l~~~i~~~--~~~~v~~~~~~~--~~~~~----l~~l~~l~~~~~~~li~De~~~~~~~~~~~~~ 217 (420)
T 3gbx_A 150 ----IDESGKIDYDEMAKLAKEH--KPKMIIGGFSAY--SGVVD----WAKMREIADSIGAYLFVDMAHVAGLIAAGVYP 217 (420)
T ss_dssp ----ECTTCSCCHHHHHHHHHHH--CCSEEEECCTTC--CSCCC----HHHHHHHHHHTTCEEEEECTTTHHHHHTTSSC
T ss_pred ----CCccCCcCHHHHHHHHHhc--CCeEEEEecCcc--CCccC----HHHHHHHHHHcCCEEEEECCcchhceecccCC
Confidence 0000013899999999854 477888865443 34555 9999999999999999999986 443333221
Q ss_pred ccccCCCCCcEE--EecccccCCccchhhheeCH---HHHhhcCCCCCCCCC-CCCHHHHHHHHHHHHHHhh---hcHHH
Q 017259 182 ASDWEEVRPDMV--ILGKALGGGVIPVSAVLADK---EVMLCIQPGEHGSTF-GGNPLASAVAIASLDVIRD---EKLAE 252 (374)
Q Consensus 182 ~~~~~~~~~d~~--s~sK~~~~G~~~~G~~~~~~---~~~~~~~~~~~~~~~-~~~~~~~~aa~~al~~~~~---~~~~~ 252 (374)
. ... .+|++ |+||+++ |. ++|++++++ ++.+.+.......++ .++...++++..++..... +++.+
T Consensus 218 ~--~~~-~~di~~~s~sK~~~-g~-~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~ 292 (420)
T 3gbx_A 218 N--PVP-HAHVVTTTTHKTLA-GP-RGGLILAKGGDEELYKKLNSAVFPSAQGGPLMHVIAGKAVALKEAMEPEFKVYQQ 292 (420)
T ss_dssp C--STT-TSSEEEEESSGGGC-SC-SCEEEEESSCCHHHHHHHHHHHC----CCCCHHHHHHHHHHHHHTTSHHHHHHHH
T ss_pred c--ccc-cCCEEEeecccCCC-CC-CceEEEEcCCcHHHHHHhhhhcCCCCCCCcchhHHHHHHHHHHHHHhHhHHHHHH
Confidence 1 111 26766 5779997 44 568888886 676666543222222 2334444444445543322 24567
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCceee-EEEEeeeEEEEeccCCCchhHHHHHHHHHHCCeEecc-------C---CCCEE
Q 017259 253 RSAHLGEELRQHLFKIQQQFPNYVKE-VRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKP-------T---HDTIV 321 (374)
Q Consensus 253 ~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~-------~---~~~~l 321 (374)
+++++.+++.+.|++. ++... ....+.++++.++... .+...+.+.|.++||.+.+ + ..+.+
T Consensus 293 ~~~~~~~~l~~~L~~~-----g~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~~~~i 365 (420)
T 3gbx_A 293 QVAKNAKAMVEVFLNR-----GYKVVSGGTENHLFLLDLVDKN--LTGKEADAALGRANITVNKNSVPNDPKSPFVTSGI 365 (420)
T ss_dssp HHHHHHHHHHHHHHHT-----TCEEGGGSCSSSEEEEECGGGT--CCHHHHHHHHHHTTEECEEECCTTCSSCTTTCSEE
T ss_pred HHHHHHHHHHHHHHhc-----CCeeccCCCCCeEEEEEcCCCC--CCHHHHHHHHHHCCcEeccccCCCCccccCCCcce
Confidence 7777788887777663 22111 1134667777765321 1577888889899999987 2 24679
Q ss_pred EEecCCC----CCHHHHHHHHHHHHHHHhccC
Q 017259 322 RLTPPLS----ISSNELQEGSKALHDVLELDL 349 (374)
Q Consensus 322 Ri~~~~~----~~~e~i~~~~~~l~~~~~~~~ 349 (374)
||+++.. .+++++++++++|+++++ +.
T Consensus 366 Ri~~~~~~~~~~~~~~i~~~~~~l~~~l~-~~ 396 (420)
T 3gbx_A 366 RIGSPAVTRRGFKEAEVKELAGWMCDVLD-NI 396 (420)
T ss_dssp EEECHHHHHTTCCHHHHHHHHHHHHHHHH-TT
T ss_pred EEecchhcccCCCHHHHHHHHHHHHHHHh-Cc
Confidence 9997654 568999999999999998 54
No 203
>3b8x_A WBDK, pyridoxamine 5-phosphate-dependent dehydrase; aspartate aminotransferase, colitose, perosamine, O-antigen, pyridoxal phosphate,; HET: G4M; 1.70A {Escherichia coli} PDB: 2gms_A* 2gmu_A* 2r0t_A* 3gr9_A*
Probab=99.89 E-value=6.9e-22 Score=185.31 Aligned_cols=299 Identities=12% Similarity=0.103 Sum_probs=194.4
Q ss_pred hHHHHHHHhccccCcCCCCCcHHHHHHHHhcccCCCeEEecCChHHHHHHHHHHHHHcc--cccccCCCCccEEEEeccC
Q 017259 2 KALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWG--YVKKKFSIDEAIIVSCCGC 79 (374)
Q Consensus 2 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~gs~a~~~al~~~~~~~--~~~~G~~~~~~~vi~~~~~ 79 (374)
+|+.+++..+.+ ++.+...++++.++++++.+++++++||++|++.+++.++... ...+| ++|++..++
T Consensus 19 ~a~~~~~~~~~~----~~~~~~~~l~~~la~~~~~~~~i~~~sGt~a~~~al~~~~~~~~~~~~~g-----~~Vi~~~~~ 89 (390)
T 3b8x_A 19 KAIQSVLDSKMF----TMGEYVKQYETQFAKTFGSKYAVMVSSGSTANLLMIAALFFTKKPRLKKG-----DEIIVPAVS 89 (390)
T ss_dssp HHHHHHHHHTCC----SSCHHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHTTSSSSCSCCTT-----CEEEEESSS
T ss_pred HHHHHHHHcCCC----CCChHHHHHHHHHHHHHCCCcEEEECCHHHHHHHHHHHHHhhhhcCCCCc-----CEEEECCCC
Confidence 455666655433 3467888999999999998899999999999999998873100 03445 899999999
Q ss_pred CCCcccccccccCCccccccCCCCCCCceeccCC-CHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHH
Q 017259 80 FHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFG-DITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLC 158 (374)
Q Consensus 80 yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~ 158 (374)
|++....+...+....+. +...+ .+. |+++++++++ ++++++++.+ ++|...+ +++|.++|
T Consensus 90 ~~~~~~~~~~~g~~~~~~----~~~~~----~~~~d~~~l~~~i~---~~~~~v~~~~---~~g~~~~----~~~i~~l~ 151 (390)
T 3b8x_A 90 WSTTYYPLQQYGLRVKFV----DIDIN----TLNIDIESLKEAVT---DSTKAILTVN---LLGNPNN----FDEINKII 151 (390)
T ss_dssp CHHHHHHHHHTTCEEEEE----CBCTT----TCSBCHHHHHHHCC---TTEEEEEEEC---GGGCCCC----HHHHHHHH
T ss_pred cHHHHHHHHHcCCEEEEE----ecCcc----ccCcCHHHHHHHhC---cCCeEEEEEC---CccChhh----HHHHHHHH
Confidence 988766544332221111 11010 011 7899998886 4788888864 2354555 99999999
Q ss_pred HhcCCEEEEecccc-CCcccccCcccccCCCCCcEEEeccccc----CCccchhhheeCH-HHHhhc---CCCC------
Q 017259 159 SKYNILMIADEIQS-GLARSGRMLASDWEEVRPDMVILGKALG----GGVIPVSAVLADK-EVMLCI---QPGE------ 223 (374)
Q Consensus 159 ~~~~i~li~Dea~~-~~~~~g~~~~~~~~~~~~d~~s~sK~~~----~G~~~~G~~~~~~-~~~~~~---~~~~------ 223 (374)
++||+++|+|++|+ |.... ...++..+++.++||..+ +| .+|+++.++ ++.+.+ ....
T Consensus 152 ~~~~~~li~D~a~~~g~~~~-----~~~~g~~~~~~~~s~~~~k~~~~g--~gG~~~~~~~~l~~~~~~~~~~g~~~~~~ 224 (390)
T 3b8x_A 152 GGRDIILLEDNCESMGATFN-----NKCAGTFGLMGTFSSFYSNHIATM--EGGCIVTDDEEIYHILLCIRAHGWTRNLP 224 (390)
T ss_dssp TTSCCEEEEECTTCTTCEET-----TEETTSSSSEEEEECCTTSSSCSS--SCEEEEESCHHHHHHHHHHTBTTBSTTSC
T ss_pred HHcCCEEEEECcCcccCEEC-----CcccccccceEEEEccCCCCCccC--CceEEEeCCHHHHHHHHHHHhcCCCcccc
Confidence 99999999999998 33221 123455668888876443 33 247777765 554432 2111
Q ss_pred ----------------------CCCCCCCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHhCCCceeeE--
Q 017259 224 ----------------------HGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEV-- 279 (374)
Q Consensus 224 ----------------------~~~~~~~~~~~~~aa~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-- 279 (374)
.+.++..+.+.+++++++++.++ ++.++.+++.+++.+.|+++ |++....
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~l~~l~~l~--~~~~~~~~~~~~l~~~L~~~----~~~~~~~~~ 298 (390)
T 3b8x_A 225 KKNKVTGVKSDDQFEESFKFVLPGYNVRPLEMSGAIGIEQLKKLP--RFISVRRKNAEYFLDKFKDH----PYLDVQQET 298 (390)
T ss_dssp SEETTTEECCSCTTTSSSCBCSCCCBCCCCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHTTC----SSEEECCCC
T ss_pred ccccccccccccccccccceeccccccCcCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhcCC----CCcccCCCC
Confidence 12233467788888877776553 45667777777777766543 2221111
Q ss_pred -EEEeeeEEEEeccCCCchhHHHHHHHHHHCCeEeccC-------C-C---------------------CEEEEecCCCC
Q 017259 280 -RGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPT-------H-D---------------------TIVRLTPPLSI 329 (374)
Q Consensus 280 -~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~-------~-~---------------------~~lRi~~~~~~ 329 (374)
......+++.++.. .+.+.+++.+.|.++||.+++. . + ..+|++++..+
T Consensus 299 ~~~~~~~~~i~~~~~-~~~~~~~l~~~L~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~ 377 (390)
T 3b8x_A 299 GESSWFGFSFIIKKD-SGVIRKQLVENLNSAGIECRPIVTGNFLKNTDVLKYFDYTVHNNVDNAEYLDKNGLFVGNHQIE 377 (390)
T ss_dssp SBCCCCEEEEEECTT-SCCCHHHHHHHHHHTTBCCBCSTTSSGGGCHHHHTTCEEEESSCCHHHHHHHHHEEEEECCSSC
T ss_pred CCcccEEEEEEecCc-CcccHHHHHHHHHHCCCCeeeecCCchhhcchhhhcCCCCCcCCChHHHHHhcCEEEeeCCCCC
Confidence 11122344455521 0115788999999999988752 1 0 25999999999
Q ss_pred CHHHHHHHHHHH
Q 017259 330 SSNELQEGSKAL 341 (374)
Q Consensus 330 ~~e~i~~~~~~l 341 (374)
|++|++++++.|
T Consensus 378 t~~di~~i~~~l 389 (390)
T 3b8x_A 378 LFDEIDYLREVL 389 (390)
T ss_dssp CHHHHHHHHHHT
T ss_pred CHHHHHHHHHhh
Confidence 999999999876
No 204
>2x3l_A ORN/Lys/Arg decarboxylase family protein; lyase; HET: LLP; 2.00A {Staphylococcus aureus}
Probab=99.88 E-value=1.4e-22 Score=193.25 Aligned_cols=288 Identities=15% Similarity=0.072 Sum_probs=187.9
Q ss_pred CCCcHHHHHHHHhcccCCC-eEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccCCcccc
Q 017259 19 YNDKFPVFAERLTSMFGYD-MVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAI 97 (374)
Q Consensus 19 ~~~~~~~l~~~l~~~~~~~-~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~ 97 (374)
+.....++++.+++ +|.+ .+++++|+++|+..+++++ .++| |+|++.+++|++........+..+.+.
T Consensus 55 ~~~~~~~~~~~la~-~g~~~~v~~~~G~t~a~~~~~~a~-----~~~g-----d~Vlv~~~~h~s~~~~~~~~G~~~~~v 123 (446)
T 2x3l_A 55 PEEVILKSMKQVEK-HSDYDGYFLVNGTTSGILSVIQSF-----SQKK-----GDILMARNVHKSVLHALDISQQEGHFI 123 (446)
T ss_dssp CSSHHHHHHHHHCS-CTTEEEEEESSHHHHHHHHHHHTT-----TTSS-----SCEEECTTCCHHHHHHHHHHTCCEEEC
T ss_pred cchHHHHHHHHHHh-cCCCceEEEeCCHHHHHHHHHHHh-----cCCC-----CEEEEecCccHHHHHHHHHcCCeEEEE
Confidence 34567889999999 9875 5788999999999999887 4567 999999999877666554443332221
Q ss_pred ccC-CCCCCCc-eeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEeccccC-C
Q 017259 98 RGF-GPLLPGH-LKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSG-L 174 (374)
Q Consensus 98 ~~~-~~~~~~~-~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~~-~ 174 (374)
... .+. .+. ..+ |++++ +. ++++++++++ .+++|.+.+ +++|.++|++||++||+||+|++ +
T Consensus 124 ~~~~~~~-~~~~~~~---d~~~l---~~---~~~~~v~~~~-~n~~G~~~~----l~~I~~l~~~~~~~livDea~~~~~ 188 (446)
T 2x3l_A 124 ETHQSPL-TNHYNKV---NLSRL---NN---DGHKLVVLTY-PNYYGETFN----VEEVIKSLHQLNIPVLIDEAHGAHF 188 (446)
T ss_dssp EEEECTT-TSSEEEE---EC-------------CCEEEEES-SCTTSCCCC----HHHHHHHHHHTTCCEEEECTTCTTT
T ss_pred eCeeccc-cCcCCCC---CHHHH---cC---CCceEEEEEC-CCCCeEecC----HHHHHHHHHhcCCeEEEcchhhhhh
Confidence 100 000 000 011 34555 22 4678888888 566898888 99999999999999999999986 3
Q ss_pred cccccCcccccCCCCCcEEEe--cccccCCccchhhheeCHHHHh--hcCCC-CCCCCCCCCHHHHHHHHHHHHHHhhhc
Q 017259 175 ARSGRMLASDWEEVRPDMVIL--GKALGGGVIPVSAVLADKEVML--CIQPG-EHGSTFGGNPLASAVAIASLDVIRDEK 249 (374)
Q Consensus 175 ~~~g~~~~~~~~~~~~d~~s~--sK~~~~G~~~~G~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~aa~~al~~~~~~~ 249 (374)
.+.+..+. .....+|++++ +|.++++. ++|++++++++++ .+... ....+.+.+...+++..++++.+....
T Consensus 189 ~f~~~~~~--~~~~g~Di~~~S~~K~l~~~~-g~g~l~~~~~~i~~~~~~~~~~~~~~~s~~~~~~aal~~a~~~l~~~g 265 (446)
T 2x3l_A 189 GLQGFPDS--TLNYQADYVVQSFHKTLPALT-MGSVLYIHKNAPYRENIIEYLSYFQTSSPSYLIMASLESAAQFYKTYD 265 (446)
T ss_dssp TSTTSCCC--GGGGTCSEEEECHHHHSSSCT-TCEEEEEETTCTTHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHHHCC
T ss_pred ccCCCCCC--hHHcCCCEEEECCcccccccc-ccEEEEEcCCcCCHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhC
Confidence 22222112 22234677654 59888776 7899888776543 22211 112234456666666666677665432
Q ss_pred ---HHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCchhHHHHHHHHHHCCeEeccCCCCEEEEecC
Q 017259 250 ---LAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTHDTIVRLTPP 326 (374)
Q Consensus 250 ---~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~~~lRi~~~ 326 (374)
+.++.+++.+++++. .+ .+.. ...+.++++.++.. +..++.+.|.++||.++..+.+++|++++
T Consensus 266 ~~~~~~~~~~l~~~l~~~------g~-~~~~--~~~~~~l~i~~~~~----~~~~l~~~L~~~GI~v~~~g~~~iRi~~~ 332 (446)
T 2x3l_A 266 STLFFAKRAQLIECLENK------GF-EMLQ--VDDPLKLLIKYEGF----TGHDIQNWFMNAHIYLELADDYQALAILP 332 (446)
T ss_dssp CHHHHHHHHHHHHHHHHH------TC-EEEE--CSSTTEEEEECTTS----CHHHHHHHHHHTTEEESEECSSCEEEECC
T ss_pred HHHHHHHHHHHHHHHHHc------CC-EECc--CCCCeEEEEEeCCc----CHHHHHHHHHHCCCEEEecCCCEEEEEee
Confidence 555555555555554 21 1111 11234567766522 67889999999999998444689999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhccCC
Q 017259 327 LSISSNELQEGSKALHDVLELDLP 350 (374)
Q Consensus 327 ~~~~~e~i~~~~~~l~~~~~~~~~ 350 (374)
...+++++ +++++|+++++ .+.
T Consensus 333 ~~~t~e~i-~l~~aL~~~~~-~~~ 354 (446)
T 2x3l_A 333 LWHHDDTY-LFDSLLRKIED-MIL 354 (446)
T ss_dssp CCCTTCCC-CHHHHHHHHHT-CCC
T ss_pred cCCCHHHH-HHHHHHHHHHH-hhc
Confidence 88899999 99999999998 764
No 205
>2dgk_A GAD-beta, GADB, glutamate decarboxylase beta; gadbd1-14, autoinhibition, substituted aldamine, lyase; HET: PLP; 1.90A {Escherichia coli} PDB: 2dgm_A* 1pmo_A* 2dgl_A* 1pmm_A* 3fz6_A* 3fz7_A 3fz8_A* 1xey_A*
Probab=99.88 E-value=3.8e-21 Score=183.78 Aligned_cols=309 Identities=11% Similarity=-0.020 Sum_probs=186.1
Q ss_pred HHHHHHHHhcccCCC-------eEEecCChHHHHHHHHHHHHHccc---ccccCCCCccEEEEeccCCCCcccccccccC
Q 017259 23 FPVFAERLTSMFGYD-------MVLPMNTGAEGVETALKLARKWGY---VKKKFSIDEAIIVSCCGCFHGRTLAAISMSC 92 (374)
Q Consensus 23 ~~~l~~~l~~~~~~~-------~~~~~~~gs~a~~~al~~~~~~~~---~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~ 92 (374)
..++.+++++++|.+ .+++++||++|+..++.+++.... ..+|.+..+++|++.+ + |.....+....+
T Consensus 83 ~~~~~~~la~l~g~~~~~~~~~~~~~t~ggtea~~~al~a~~~~~~~~~~~~G~~~~~~~vi~~~-~-h~~~~~~~~~~G 160 (452)
T 2dgk_A 83 DLRCVNMVADLWHAPAPKNGQAVGTNTIGSSEACMLGGMAMKWRWRKRMEAAGKPTDKPNLVCGP-V-QICWHKFARYWD 160 (452)
T ss_dssp HHHHHHHHHHHTTCCCCTTSCCEEEEESSHHHHHHHHHHHHHHHHHHHHHHTTCCCSCCEEEESS-C-CHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCCCcccccCCceEEeCCHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEECC-C-cHHHHHHHHHcC
Confidence 445667778877665 389999999999999988864210 0133111126888877 4 444333322222
Q ss_pred CccccccCCCCCC-CceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhc------CCEE
Q 017259 93 DNEAIRGFGPLLP-GHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKY------NILM 165 (374)
Q Consensus 93 ~~~~~~~~~~~~~-~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~------~i~l 165 (374)
-.... .+... +.. -|+++|+++|+ +++++|+++.+.+++|.+.+ +++|.++|++| |+++
T Consensus 161 ~~v~~---v~~~~~~~~----~d~~~l~~~i~---~~t~~v~~~~~~n~tG~~~~----l~~I~~ia~~~~~~~~~~~~l 226 (452)
T 2dgk_A 161 VELRE---IPMRPGQLF----MDPKRMIEACD---ENTIGVVPTFGVTYTGNYEF----PQPLHDALDKFQADTGIDIDM 226 (452)
T ss_dssp CEEEE---CCCBTTBCS----CCHHHHHHHCC---TTEEEEECBBSCTTTCBBCC----HHHHHHHHHHHHHHHCCCCCE
T ss_pred ceEEE---EecCCCCCe----ECHHHHHHHHh---hCCEEEEEEcCCcCCcccCC----HHHHHHHHHHHhhccCCCCcE
Confidence 11111 11100 000 17999999987 46899999999899999988 99999999996 9999
Q ss_pred EEeccccCCcc--cccCcccccCCCCCcEEEec--ccccCCccchhhheeCHH-HH-hhcCC--CCCC-------CCCCC
Q 017259 166 IADEIQSGLAR--SGRMLASDWEEVRPDMVILG--KALGGGVIPVSAVLADKE-VM-LCIQP--GEHG-------STFGG 230 (374)
Q Consensus 166 i~Dea~~~~~~--~g~~~~~~~~~~~~d~~s~s--K~~~~G~~~~G~~~~~~~-~~-~~~~~--~~~~-------~~~~~ 230 (374)
++|++|+++.. ..............|.++++ |.+.+|+ ++|+++.+++ +. +.+.. ...+ ..++.
T Consensus 227 ~vD~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~hK~~~~~~-~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r 305 (452)
T 2dgk_A 227 HIDAASGGFLAPFVAPDIVWDFRLPRVKSISASGHKFGLAPL-GCGWVIWRDEEALPQELVFNVDYLGGQIGTFAINFSR 305 (452)
T ss_dssp EEECTTGGGTHHHHCTTCCCSTTSTTEEEEEEETTTTTCCCS-SCEEEEESSGGGSCGGGCEEECCTTCCEEECCSCCSC
T ss_pred EEEcccHHHHHHhhCccchhhcCCCCCcEEEECcccccCCCC-CeEEEEEcCHHHHHHHhccCccccCCCCCCcccCCCC
Confidence 99999986532 01111111111134555554 8666788 9999888643 32 33321 1111 01122
Q ss_pred CHHHHHHHHHHHHHHhhh---cHHHHHHHHHHHHHHHHHHHHHhCCCceeeEE----EEeeeEEEEeccCCC-chhHHHH
Q 017259 231 NPLASAVAIASLDVIRDE---KLAERSAHLGEELRQHLFKIQQQFPNYVKEVR----GRGLFNAVEFDKTAL-PVSAYDI 302 (374)
Q Consensus 231 ~~~~~~aa~~al~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~----~~g~~~~~~~~~~~~-~~~~~~~ 302 (374)
+.....+..++++.+..+ ++.++..++++++.+.|++. +++....+ +..+++.|.++.... ..+..++
T Consensus 306 ~~~~~~~~~aal~~lg~~g~~~~~~~~~~~a~~l~~~L~~~----~~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~~~l 381 (452)
T 2dgk_A 306 PAGQVIAQYYEFLRLGREGYTKVQNASYQVAAYLADEIAKL----GPYEFICTGRPDEGIPAVCFKLKDGEDPGYTLYDL 381 (452)
T ss_dssp BCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT----SSEEEEEECCTTTBSSEEEEEECTTCCCSCCHHHH
T ss_pred hhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhC----CCeEEecCCCCCCCeEEEEEEecCcccccCCHHHH
Confidence 222333344445544333 34555555666666655543 22222122 245667776654210 0135789
Q ss_pred HHHHHHCCeEecc----C---CCCEEEEecCCCCCHHHHHHHHHHHHHHHhccCCcCC
Q 017259 303 CLKMKERGILAKP----T---HDTIVRLTPPLSISSNELQEGSKALHDVLELDLPKMR 353 (374)
Q Consensus 303 ~~~l~~~Gi~v~~----~---~~~~lRi~~~~~~~~e~i~~~~~~l~~~~~~~~~~~~ 353 (374)
.+.|.++|+.++. . +..++|++++...|+++++++++.|+++++ .+...+
T Consensus 382 ~~~L~~~Gi~v~~~~~~~~~~~~~~lRis~~~~~t~e~id~li~~l~~~~~-~~~~~~ 438 (452)
T 2dgk_A 382 SERLRLRGWQVPAFTLGGEATDIVVMRIMCRRGFEMDFAELLLEDYKASLK-YLSDHP 438 (452)
T ss_dssp HHHHHHTTCBCCEEECSTTCTTCEEEEEECCTTCCHHHHHHHHHHHHHHHH-HHHHCG
T ss_pred HHHHHhcCCeeeeeeCCcccCCeEEEEEEecCCCCHHHHHHHHHHHHHHHH-HHHhCC
Confidence 9999999996542 2 245899999888899999999999999988 765544
No 206
>3n0l_A Serine hydroxymethyltransferase; alpha beta class, 3-layer(ABA) sandwich, CSGI transferase, structural genomics; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.67.1.0
Probab=99.88 E-value=6.5e-21 Score=180.06 Aligned_cols=287 Identities=16% Similarity=0.148 Sum_probs=178.4
Q ss_pred HHHHHhcccCCCeE-EecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCccccccc--ccCCccccccCCC
Q 017259 26 FAERLTSMFGYDMV-LPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAIS--MSCDNEAIRGFGP 102 (374)
Q Consensus 26 l~~~l~~~~~~~~~-~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~--~~~~~~~~~~~~~ 102 (374)
++++++++++.+.. ++++||++|++.+++.+ .++| |+|++..++|++....... ..+.. +.. .+
T Consensus 76 ~~~~la~~~g~~~~~i~~~sGt~a~~~~~~~~-----~~~g-----d~vl~~~~~~~~~~~~~~~~~~~g~~-~~~--~~ 142 (417)
T 3n0l_A 76 AIERCKKLFNCKFANVQPNSGSQANQGVYAAL-----INPG-----DKILGMDLSHGGHLTHGAKVSSSGKM-YES--CF 142 (417)
T ss_dssp HHHHHHHHHTCSEEECCCSSHHHHHHHHHHHH-----SCTT-----CEEEEECC----------------CC-SEE--EE
T ss_pred HHHHHHHHhCCCCcceEeccHHHHHHHHHHHh-----cCCC-----CEEEecccccccccchhhhhhhhcce-eee--Ee
Confidence 44477888787754 66677799999999988 5677 9999999999775432111 11100 000 00
Q ss_pred CCCCceeccC-CCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEecccc-CCcccccC
Q 017259 103 LLPGHLKVDF-GDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQS-GLARSGRM 180 (374)
Q Consensus 103 ~~~~~~~~~~-~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~-~~~~~g~~ 180 (374)
+ ++. -.+ .|+++|++++++. +++++++++++ +|...+ +++|.++|++||++||+||+|+ |....+..
T Consensus 143 ~--~~~-~~~~~d~~~l~~~i~~~--~~~~v~~~~~~--~G~~~~----l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~ 211 (417)
T 3n0l_A 143 Y--GVE-LDGRIDYEKVREIAKKE--KPKLIVCGASA--YARVID----FAKFREIADEIGAYLFADIAHIAGLVVAGEH 211 (417)
T ss_dssp E--CCC-TTSSCCHHHHHHHHHHH--CCSEEEECCSS--CCSCCC----HHHHHHHHHHHTCEEEEECTTTHHHHHTTSS
T ss_pred c--cCC-CCCCcCHHHHHHHHHhc--CCeEEEECCcc--cCccCC----HHHHHHHHHHcCCEEEEECccchhhhhcccC
Confidence 0 000 011 3899999999853 56777776644 377776 9999999999999999999975 33222221
Q ss_pred cccccCCCCCcEE--EecccccCCccchhhheeC-HHHHhhcCCCC-CCCCCCCCHHHHHHHHHHHHHHhh---hcHHHH
Q 017259 181 LASDWEEVRPDMV--ILGKALGGGVIPVSAVLAD-KEVMLCIQPGE-HGSTFGGNPLASAVAIASLDVIRD---EKLAER 253 (374)
Q Consensus 181 ~~~~~~~~~~d~~--s~sK~~~~G~~~~G~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~aa~~al~~~~~---~~~~~~ 253 (374)
.. . .. ..|++ |+||++ +|+ ++|+++++ +++.+.+.... .+.+.+++...++++.+++..... +++.++
T Consensus 212 ~~-~-~~-~~di~~~s~sK~l-~g~-~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~~a~~~~~~~~~~~~~~~ 286 (417)
T 3n0l_A 212 PS-P-FP-YAHVVSSTTHKTL-RGP-RGGIIMTNDEELAKKINSAIFPGIQGGPLMHVIAAKAVGFKFNLSDEWKVYAKQ 286 (417)
T ss_dssp CC-C-TT-TCSEEEEESSTTT-CSC-SCEEEEESCHHHHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHHTSHHHHHHHHH
T ss_pred CC-c-cc-cceEEEeeCcccc-CCC-CeeEEEECCHHHHHHHhhhhCCcccCCcHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 11 0 11 24665 556999 566 78999888 67777765432 223334456666666666665322 245666
Q ss_pred HHHHHHHHHHHHHHHHHhCCCcee-eEEEEeeeEEEEeccCCCchhHHHHHHHHHHCCeEeccC----------CCCEEE
Q 017259 254 SAHLGEELRQHLFKIQQQFPNYVK-EVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPT----------HDTIVR 322 (374)
Q Consensus 254 ~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~----------~~~~lR 322 (374)
++++.+++.+.|++. ++.. .....+.++++.+... +.+..++.+.|.++||.+++. ..+.+|
T Consensus 287 ~~~~~~~l~~~L~~~-----g~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~~~~~r 359 (417)
T 3n0l_A 287 VRTNAQVLANVLMDR-----KFKLVSDGTDNHLVLMSFLDR--EFSGKDADLALGNAGITANKNTVPGEIRSPFITSGLR 359 (417)
T ss_dssp HHHHHHHHHHHHHHT-----TCEEGGGSCSSSEEEEECTTS--SSCHHHHHHHHHHTTEECEECCCTTCCSCTTTCSEEE
T ss_pred HHHHHHHHHHHHHhC-----CceeccCCCCceEEEEEcccC--CCCHHHHHHHHHHcCeEEeccccCCCCcccCCCCeeE
Confidence 666777777777663 2211 1112355677766432 125778888899999998743 236799
Q ss_pred EecCC----CCCHHHHHHHHHHHHHHHhccC
Q 017259 323 LTPPL----SISSNELQEGSKALHDVLELDL 349 (374)
Q Consensus 323 i~~~~----~~~~e~i~~~~~~l~~~~~~~~ 349 (374)
++++. ..+++++++++++|+++++ ..
T Consensus 360 i~~~~~~~~~~~~~~i~~~~~~l~~~l~-~~ 389 (417)
T 3n0l_A 360 LGTPALTARGFKEKEMEIVSNYIADILD-DV 389 (417)
T ss_dssp EECHHHHHTTCCHHHHHHHHHHHHHHHH-TT
T ss_pred ecCHHHhhCCCCHHHHHHHHHHHHHHHh-cc
Confidence 98653 3578999999999999997 54
No 207
>3ju7_A Putative PLP-dependent aminotransferase; NP_978343.1, struct genomics, joint center for structural genomics, JCSG; HET: LLP PGE; 2.19A {Bacillus cereus atcc 10987}
Probab=99.88 E-value=1.2e-21 Score=182.75 Aligned_cols=305 Identities=16% Similarity=0.124 Sum_probs=197.0
Q ss_pred hHHHHHHHhccccCcCCCCCcHHHHHHHH-hcccC-CCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccC
Q 017259 2 KALQEQAEKLTLSSRAFYNDKFPVFAERL-TSMFG-YDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGC 79 (374)
Q Consensus 2 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~l-~~~~~-~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~ 79 (374)
+|+.+.++.+.++. ..+...++++.+ ++++| .+++++++||++|+..++..+. .++| |+|++..++
T Consensus 20 ~a~~~~~~~~~~~~---~~~~~~~l~~~~~a~~~g~~~~~v~~~sgt~al~~al~~l~----~~~G-----d~Vi~~~~~ 87 (377)
T 3ju7_A 20 DELKEIDASHIYTN---YGPINQRFEQTIMSGFFQNRGAVTTVANATLGLMAAIQLKK----RKKG-----KYALMPSFT 87 (377)
T ss_dssp HHHHHHHHHTCCSS---SCHHHHHHHHHHHHHTSTTCSEEEEESCHHHHHHHHHHHHS----CTTC-----CEEEEESSS
T ss_pred HHHHHHHHcCCccc---CCHHHHHHHHHHHHHHhCCCCeEEEeCCHHHHHHHHHHHcC----CCCc-----CEEEECCCC
Confidence 45666666554321 256788999999 99999 8899999999999999998773 5677 999999999
Q ss_pred CCCcccccccccCCccccccCCCCCCCceeccC-CCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHH
Q 017259 80 FHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDF-GDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLC 158 (374)
Q Consensus 80 yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~ 158 (374)
|.+........+..+.+. + +..-.+ -|++++++++....+++++++.+ +++|...+ +++|.++|
T Consensus 88 ~~~~~~~~~~~G~~~~~v----~----~~~~~~~~d~~~l~~~i~~~~~~tk~v~~~---~~~G~~~~----~~~i~~la 152 (377)
T 3ju7_A 88 FPATPLAAIWCGLEPYFI----D----ISIDDWYMDKTVLWDKIEELKEEVAIVVPY---ATFGSWMN----LEEYEELE 152 (377)
T ss_dssp CTHHHHHHHHTTCEEEEE----C----BCTTTCSBCHHHHHHHHHHHGGGEEEECCB---CGGGBCCC----CHHHHHHH
T ss_pred cHHHHHHHHHcCCEEEEE----e----cCCccCCcCHHHHHHHHhcCCCCceEEEEE---CCCCCccC----HHHHHHHH
Confidence 877554443333222211 1 110011 18999999884321238888743 44677777 99999999
Q ss_pred HhcCCEEEEeccccCCc-ccccCcccccC-CCCCcEE--Eec--ccccCCccchhhhee-CHHHHhhcCCC---------
Q 017259 159 SKYNILMIADEIQSGLA-RSGRMLASDWE-EVRPDMV--ILG--KALGGGVIPVSAVLA-DKEVMLCIQPG--------- 222 (374)
Q Consensus 159 ~~~~i~li~Dea~~~~~-~~g~~~~~~~~-~~~~d~~--s~s--K~~~~G~~~~G~~~~-~~~~~~~~~~~--------- 222 (374)
+ ||++||+|++|+... ..+. .. +...|+. ||+ |.+++| .+|+++. ++++.+.++..
T Consensus 153 ~-~~~~vi~D~a~a~g~~~~~~-----~~g~~~~d~~~~S~~~~K~l~~g--~gG~~~~~~~~l~~~~~~~~~~g~~~~~ 224 (377)
T 3ju7_A 153 K-KGVPVVVDAAPGFGLMNGGM-----HYGQDFSGMIIYSFHATKPFGIG--EGGLIYSKNEEDIQRIKRMGNFGFDTNR 224 (377)
T ss_dssp H-TTCCBEEECTTCTTCEETTE-----ETTTTCSSEEEEECBTTSSSCCB--SCEEEEESCHHHHHHHHHHTBTTBCTTS
T ss_pred h-cCCEEEEECCCccCCeECCE-----eccCCCCcEEEEECCCCCcCCCC--CcEEEEECCHHHHHHHHHHHhcCCCCCC
Confidence 9 999999999997211 1111 11 1123444 543 888864 4566665 45655544321
Q ss_pred ---CCCCCCCCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHhCCCceee-E-EEEeeeEEEEeccCCCch
Q 017259 223 ---EHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKE-V-RGRGLFNAVEFDKTALPV 297 (374)
Q Consensus 223 ---~~~~~~~~~~~~~~aa~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~-~~~g~~~~~~~~~~~~~~ 297 (374)
..+..+..+.+.++.+++.++.+ +.+.++.+++.+++.+.|+++...-...... . .....++.+.+++..
T Consensus 225 ~~~~~g~~~~~~~~~aa~~~~~l~~l--~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 299 (377)
T 3ju7_A 225 ECTMMGFNCKMSEYAAAIGIATMKKW--DDKLKERTRISEWYKQLLQSNGLMKKGWQLQKTEAVIQQFMPILCPEEV--- 299 (377)
T ss_dssp CBCSSCCBCCCCHHHHHHHHHHHHTH--HHHHHHHHHHHHHHHHHHHHTTTTTTTCBCCCCSCBCCSSEEEECCTTS---
T ss_pred ceeeccccCCCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhcCCCCccccccCCCCCcceEEEEEEEeCChh---
Confidence 12345667888877777777654 3457777888888888887653110011111 1 111223344444332
Q ss_pred hHHHHHHHHHHCCeEeccCC-------------------------CCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 017259 298 SAYDICLKMKERGILAKPTH-------------------------DTIVRLTPPLSISSNELQEGSKALHDVLE 346 (374)
Q Consensus 298 ~~~~~~~~l~~~Gi~v~~~~-------------------------~~~lRi~~~~~~~~e~i~~~~~~l~~~~~ 346 (374)
+.+++.++|.++||.++... ...+|+.++...|++|++++++.|++++.
T Consensus 300 ~~~~l~~~L~~~gI~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~l~lp~~~~~t~~di~~v~~~l~~~~~ 373 (377)
T 3ju7_A 300 RNKQVIEDLKKQKIEARLYFSPSCHQQVLFRNYKSTDLTRTNKIAKRIVSLPLWEGMTKEIVEQIVICLGQKVV 373 (377)
T ss_dssp CHHHHHHHHHTTTBCCBCTTSSCGGGSGGGTTSCBSCCHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHTC---
T ss_pred hHHHHHHHHHHCCCceecccCCccccchhhhcCCCCCCHHHHHHHhCEEECCCCCCCCHHHHHHHHHHHHHHHh
Confidence 48899999999999885421 35789998889999999999999988776
No 208
>3bwn_A AT1G70560, L-tryptophan aminotransferase; auxin synthesis, pyridoxal-5'- phosphate, indole-3-pyruvate; HET: LLP PMP PHE; 2.25A {Arabidopsis thaliana} PDB: 3bwo_A*
Probab=99.88 E-value=7.7e-23 Score=191.86 Aligned_cols=271 Identities=13% Similarity=0.096 Sum_probs=175.0
Q ss_pred HHHHHHHhcccC-------C-CeEEecCChHHHHHHHHHHHHHcccccccCCCCcc----EEEEeccCCCCccccccccc
Q 017259 24 PVFAERLTSMFG-------Y-DMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEA----IIVSCCGCFHGRTLAAISMS 91 (374)
Q Consensus 24 ~~l~~~l~~~~~-------~-~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~----~vi~~~~~yhg~~~~~~~~~ 91 (374)
.++++.++++++ . +++++|+|+++++..+++++. .+| | +|++.+|+|.++...+...+
T Consensus 71 ~~lr~aia~~~~~~g~~~~~~~~i~~t~G~~~al~~~~~~l~-----~~G-----d~~~~~Vlv~~P~y~~~~~~~~~~g 140 (391)
T 3bwn_A 71 PELEDAIKDLHGVVGNAATEDRYIVVGTGSTQLCQAAVHALS-----SLA-----RSQPVSVVAAAPFYSTYVEETTYVR 140 (391)
T ss_dssp HHHHHHHHHHHHHHCSBCCSSSEEEEEEHHHHHHHHHHHHHH-----HTS-----SSSSEEEEECSSCCTHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhcCCCCCCCCeEEEeCChHHHHHHHHHHhc-----CCC-----CCCcceEEEcCCCchhHHHHHHHcC
Confidence 677777777664 4 589999999999999999884 456 7 99999999977655444332
Q ss_pred CCccccccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEeccc
Q 017259 92 CDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQ 171 (374)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~ 171 (374)
.. +..++. |.+.++ .++++++++++++||+|.+.. +|++.++.++++||+||+|
T Consensus 141 ~~-------------~~~~~~-d~~~l~------~~~~k~v~l~~p~NPtG~~~~------~l~~~~~~~~~~ii~De~y 194 (391)
T 3bwn_A 141 SG-------------MYKWEG-DAWGFD------KKGPYIELVTSPNNPDGTIRE------TVVNRPDDDEAKVIHDFAY 194 (391)
T ss_dssp BT-------------TEEEEE-ESTTCC------CCSCEEEEEESSCTTTCCCCC------CCC-----CCCEEEEECTT
T ss_pred Ce-------------EEEecC-CHHHcC------CCCCEEEEECCCCCCCchhHH------HHHHHhhcCCCEEEEeCCC
Confidence 21 112222 222222 146888888889999998873 3433222233999999999
Q ss_pred cCCcccccCcccccCCCCCcEEEeccccc-CCccchhhhee-CHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHhh--
Q 017259 172 SGLARSGRMLASDWEEVRPDMVILGKALG-GGVIPVSAVLA-DKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRD-- 247 (374)
Q Consensus 172 ~~~~~~g~~~~~~~~~~~~d~~s~sK~~~-~G~~~~G~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~aa~~al~~~~~-- 247 (374)
.+ . ....+. ...+....+.||||.++ .|+ |+||+++ ++++.+.+.......+++.+.+++.++.++++...+
T Consensus 195 ~~-~-~~~~l~-~~~~~~i~~~S~SK~~g~~Gl-RiG~~~~~~~~l~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~ 270 (391)
T 3bwn_A 195 YW-P-HYTPIT-RRQDHDIMLFTFSKITGHAGS-RIGWALVKDKEVAKKMVEYIIVNSIGVSKESQVRTAKILNVLKETC 270 (391)
T ss_dssp CS-T-TTSCCC-CCBCCSEEEEEHHHHHSCGGG-CEEEEEECCHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHT
T ss_pred CC-C-CCCccc-cCCCCeEEEEechhhcCCCcc-ceEEEEecCHHHHHHHHHHhcccccCCCHHHHHHHHHHHhCcchhc
Confidence 73 1 111111 11122222449999998 799 9999987 888888776543333567799999999888876421
Q ss_pred ------hcH----HHHHHHHHHHHHHHHHHHHHhCCCcee----eE---------EEEeeeEEEEeccCCCchhHHHHHH
Q 017259 248 ------EKL----AERSAHLGEELRQHLFKIQQQFPNYVK----EV---------RGRGLFNAVEFDKTALPVSAYDICL 304 (374)
Q Consensus 248 ------~~~----~~~~~~~~~~~~~~l~~~~~~~~~~~~----~~---------~~~g~~~~~~~~~~~~~~~~~~~~~ 304 (374)
+++ .++++++++.+.+.|++ +|++.. .. +..|.++|+.+++. ..+.+
T Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~----~~~~~~~~p~~~~~~f~~~~~~~~g~~~~~~~~~~------~~~~~ 340 (391)
T 3bwn_A 271 KSESESENFFKYGREMMKNRWEKLREVVKE----SDAFTLPKYPEAFCNYFGKSLESYPAFAWLGTKEE------TDLVS 340 (391)
T ss_dssp TCCCTTTSHHHHHHHHHHHHHHHHHHHHHT----CSSEECCCCCCEEETTTTEEECCCCSEEEEEESSS------CCHHH
T ss_pred cccccHHHHHHHHHHHHHHHHHHHHHHHHh----CCCcccccCCccccccccccCCCcceEEEecCCcH------HHHHH
Confidence 233 44444445555554443 221111 01 12345778877632 35666
Q ss_pred HHHHCCeEeccCC-----CCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 017259 305 KMKERGILAKPTH-----DTIVRLTPPLSISSNELQEGSKALHDVLE 346 (374)
Q Consensus 305 ~l~~~Gi~v~~~~-----~~~lRi~~~~~~~~e~i~~~~~~l~~~~~ 346 (374)
.|.++||.++++. .+++||++. .+++++++++++|+++++
T Consensus 341 ~l~~~gV~v~pg~~fg~~~~~iRis~~--~~~e~i~~~~~~L~~~~~ 385 (391)
T 3bwn_A 341 ELRRHKVMSRAGERCGSDKKHVRVSML--SREDVFNVFLERLANMKL 385 (391)
T ss_dssp HHHHTTEECEEGGGGTCCTTEEEEESC--SCHHHHHHHHHHHHSCC-
T ss_pred HHHHCCEEEccCCCCCCCCCEEEEEec--CCHHHHHHHHHHHHHHHH
Confidence 7778999998852 679999955 588999999999987776
No 209
>2z67_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine biosynthesis, seven-stranded BETE-strand, PYR 5'-phosphate; HET: PLP; 2.50A {Methanococcus maripaludis} SCOP: c.67.1.9
Probab=99.87 E-value=6.7e-21 Score=182.18 Aligned_cols=296 Identities=13% Similarity=0.070 Sum_probs=183.4
Q ss_pred cHHHHHHHHhcccCCCe-EEecCChH-HHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccCCcccccc
Q 017259 22 KFPVFAERLTSMFGYDM-VLPMNTGA-EGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRG 99 (374)
Q Consensus 22 ~~~~l~~~l~~~~~~~~-~~~~~~gs-~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~ 99 (374)
..+++++++++++|.+. +++|+||+ +++..++..++.. .+| +.|++.++.|+.... .....+-......
T Consensus 134 ~~~~~~~~la~~~g~~~~~~~t~g~te~a~~~al~~~~~~---~~~-----~~vi~~~~~h~s~~~-~~~~~G~~~~~v~ 204 (456)
T 2z67_A 134 LTNKILESFFKQLGLNVHAIATPISTGMSISLCLSAARKK---YGS-----NVVIYPYASHKSPIK-AVSFVGMNMRLVE 204 (456)
T ss_dssp HHHHHHHHHHHHTTCCCEEEEESSCHHHHHHHHHHHHHHH---HCC-----CEEEEECCCCHHHHH-HHHHTTCEEEEEC
T ss_pred HHHHHHHHHHHHcCCCCCEEEeCcHHHHHHHHHHHHHHHh---cCC-----CEEEEECCCcHHHHH-HHHHcCCCceEEE
Confidence 34558888888887764 89999999 5666677766431 134 778888887654332 2222221110000
Q ss_pred CCCCCCCceeccCCCHHHHHHHH-Hhc-CCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEeccccCCccc
Q 017259 100 FGPLLPGHLKVDFGDITALEKIF-KES-GDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARS 177 (374)
Q Consensus 100 ~~~~~~~~~~~~~~d~~~le~~l-~~~-~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~~~~~~ 177 (374)
..+...+. ..|+++|+++| +.. .+++.++++..+++++|.+.+ +++|.++|++||+++++|++|+++..
T Consensus 205 ~~~~~~~~----~~d~~~l~~~i~~~~~~~~~~~vv~~~~nn~tG~i~~----l~~I~~la~~~g~~v~vD~A~~~~~~- 275 (456)
T 2z67_A 205 TVLDGDRV----YVPVEDIENAIKKEIELGNRPCVLSTLTFFPPRNSDD----IVEIAKICENYDIPHIINGAYAIQNN- 275 (456)
T ss_dssp CEEETTEE----ECCHHHHHHHHHHHHHTTCCEEEEEESSCCTTBCCCC----HHHHHHHHHHHTCCEEEECTTTTTCH-
T ss_pred EeccCCCC----CcCHHHHHHHHHHHhhCCCeEEEEEeCCCCCCCCcCC----HHHHHHHHHHcCCcEEEECcchHHHH-
Confidence 00000000 12799999999 431 236777777777788999988 99999999999999999999986532
Q ss_pred cc-CcccccCCCCCcEEEe--cccccCCccchhhhee-CHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHhh---hcH
Q 017259 178 GR-MLASDWEEVRPDMVIL--GKALGGGVIPVSAVLA-DKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRD---EKL 250 (374)
Q Consensus 178 g~-~~~~~~~~~~~d~~s~--sK~~~~G~~~~G~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~aa~~al~~~~~---~~~ 250 (374)
|. ..........+|++++ +|.+.+++ ++|+++. ++++.+.+.+...+.....+ ..++.+++..+.. +++
T Consensus 276 g~~~~~~~~~~~~~D~~~~s~hK~~~~p~-g~G~l~~~~~~~~~~l~~~~~g~~~~~~---~~~~~aal~~l~~~~~~~~ 351 (456)
T 2z67_A 276 YYLEKLKKAFKYRVDAVVSSSDKNLLTPI-GGGLVYSTDAEFIKEISLSYPGRASATP---VVNTLVSLLSMGSKNYLEL 351 (456)
T ss_dssp HHHHHHHHHHTSCCSEEEEEHHHHHCCCS-SCEEEEESCHHHHHHHHTTSCSCBCSHH---HHHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHhhCCCCCEEEEcCCCCcCCCC-CeEEEEEcCHHHHhhcCcCCCCCCCCCH---HHHHHHHHHHHHHHHHHHH
Confidence 11 1111111115676644 59877788 8999998 56777776543332221111 2333444444333 356
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCchhHHHHHHHHHHCCe---Eec------------c
Q 017259 251 AERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGI---LAK------------P 315 (374)
Q Consensus 251 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gi---~v~------------~ 315 (374)
.++.+++.+++.+.|+++.......+... . .+++|.+.... ...++.+.|.++|+ -+. .
T Consensus 352 ~~~~~~~~~~l~~~L~~~~~~~g~~v~~~--~-~~v~~~~~~~~---~~~~l~~~L~~~gi~~~rv~~~~g~f~G~~~~~ 425 (456)
T 2z67_A 352 VKNQKNSKKLLDELLNDLSKKTGGKFLDV--E-SPIASCISVNS---DPVEIAAKLYNLRVTGPRGIKKTDHFGNCYLGT 425 (456)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSSCCBCCC--C-CSSEEEEECSS---CHHHHHHHHHHTTEESCEEECTTCHHHHTCSSC
T ss_pred HHHHHHHHHHHHHHHHhcccccCCEecCC--C-CeEEEEEeccc---HHHHHHHHHHHcCCCcceEEeecCccccccccc
Confidence 77888888888888887641110011111 2 56666662111 24689999999985 333 2
Q ss_pred CCCCEEEEecCCCCCHHHHHHHHHHHHHHH
Q 017259 316 THDTIVRLTPPLSISSNELQEGSKALHDVL 345 (374)
Q Consensus 316 ~~~~~lRi~~~~~~~~e~i~~~~~~l~~~~ 345 (374)
...+++|++++..++++|+++++++|++++
T Consensus 426 ~~~~~vr~s~~~~~t~eeid~~l~~L~~~~ 455 (456)
T 2z67_A 426 YTHDYIVMNAAIGVRTEDIVNSVSKLEKIL 455 (456)
T ss_dssp CSCCEEEEECCTTCCHHHHHHHHHHHHTC-
T ss_pred cCcchhhhhhhcCCCHHHHHHHHHHHHHHh
Confidence 224799999998899999999999998654
No 210
>2jis_A Cysteine sulfinic acid decarboxylase; pyridoxal phosphate, alternative splicing, pyridoxal phosphate (PLP), structural genomics consortium (SGC); HET: PLP; 1.6A {Homo sapiens}
Probab=99.87 E-value=1.3e-20 Score=182.95 Aligned_cols=305 Identities=14% Similarity=0.084 Sum_probs=184.9
Q ss_pred HHHHHHHHhcccCCC--eEEecCChHHHHHHHHHHHHHccc---ccccCC-CCccEEEEeccCCCCcccccccccCCccc
Q 017259 23 FPVFAERLTSMFGYD--MVLPMNTGAEGVETALKLARKWGY---VKKKFS-IDEAIIVSCCGCFHGRTLAAISMSCDNEA 96 (374)
Q Consensus 23 ~~~l~~~l~~~~~~~--~~~~~~~gs~a~~~al~~~~~~~~---~~~G~~-~~~~~vi~~~~~yhg~~~~~~~~~~~~~~ 96 (374)
..++.+++++++|.+ .+++++|||+|+..++++++.+.. ..+|.. .++.+|++..++| .....+....+.+.
T Consensus 150 e~~~~~~la~l~g~~~~~~~~t~ggtea~~~al~~ar~~~~~~~~~~G~~~~~~~~vl~s~~~h-~s~~~~~~~~g~g~- 227 (515)
T 2jis_A 150 EEEVLRKLRALVGWSSGDGIFCPGGSISNMYAVNLARYQRYPDCKQRGLRTLPPLALFTSKECH-YSIQKGAAFLGLGT- 227 (515)
T ss_dssp HHHHHHHHHHHHTCSSCEEEEESSHHHHHHHHHHHHHHHHCTTHHHHCGGGSCCEEEEEETTSC-THHHHHHHHTTSCG-
T ss_pred HHHHHHHHHHHhCCCCCCeEEcCCcHHHHHHHHHHHHHHHhhHHhhcCccccCCeEEEECCCcc-HHHHHHHHHcCCCC-
Confidence 345667788888764 899999999999999999864310 113400 0012777777764 43333332222210
Q ss_pred cccCCCCCCCceeccCC-----CHHHHHHHHHhc---CCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEe
Q 017259 97 IRGFGPLLPGHLKVDFG-----DITALEKIFKES---GDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIAD 168 (374)
Q Consensus 97 ~~~~~~~~~~~~~~~~~-----d~~~le~~l~~~---~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~D 168 (374)
..+..++.+ |+++|+++|++. +.++++|+++.+.+++|.+.+ +++|.++|++||+++++|
T Consensus 228 --------~~v~~v~~~~~~~~d~~~L~~~i~~~~~~g~~~~~Vv~~~~~n~tG~i~~----l~~I~~la~~~g~~l~vD 295 (515)
T 2jis_A 228 --------DSVRVVKADERGKMVPEDLERQIGMAEAEGAVPFLVSATSGTTVLGAFDP----LEAIADVCQRHGLWLHVD 295 (515)
T ss_dssp --------GGEEEECBCTTSCBCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCC----HHHHHHHHHHHTCEEEEE
T ss_pred --------CcEEEEecCCCCcCCHHHHHHHHHHHHhCCCCcEEEEEeCCCCCCCCccC----HHHHHHHHHHcCCeEEEe
Confidence 012223322 799999999752 336899999999999999988 999999999999999999
Q ss_pred ccccCCcccccCcccccCCC-CCcEEEe--cccccCCccchhhheeCHH--HHhhc----CCCCCC--C---------CC
Q 017259 169 EIQSGLARSGRMLASDWEEV-RPDMVIL--GKALGGGVIPVSAVLADKE--VMLCI----QPGEHG--S---------TF 228 (374)
Q Consensus 169 ea~~~~~~~g~~~~~~~~~~-~~d~~s~--sK~~~~G~~~~G~~~~~~~--~~~~~----~~~~~~--~---------~~ 228 (374)
++|+++......+.....++ .+|++++ +|.++++. ++|+++.+++ +.+.. .+...+ . ++
T Consensus 296 ~a~~~~~~~~~~~~~~~~g~~~aD~v~~s~hK~l~~p~-g~G~l~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~ 374 (515)
T 2jis_A 296 AAWGGSVLLSQTHRHLLDGIQRADSVAWNPHKLLAAGL-QCSALLLQDTSNLLKRCHGSQASYLFQQDKFYDVALDTGDK 374 (515)
T ss_dssp ETTGGGGGGCTTTGGGGTTGGGCSEEEECTTSTTCCCS-CCEEEEESCCSCHHHHHHCC---------CCSCGGGCCGGG
T ss_pred hhhhhHHHhChhhHhhcCCCccCCEEEECcccccCCCC-CeeEEEEeChHHHHHHHhcCCchhccCCcccccccCCCCCC
Confidence 99996544333222223344 6788766 69998777 8899888765 54431 111000 0 00
Q ss_pred ------CCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEe-ccC-----CCc
Q 017259 229 ------GGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEF-DKT-----ALP 296 (374)
Q Consensus 229 ------~~~~~~~~aa~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~-~~~-----~~~ 296 (374)
....+.+.+++.++....-+++.++..++.+++.+.|++. |++....++....+.|.. +.. ...
T Consensus 375 ~~~~~rr~~al~~~~~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~----~g~~~~~~~~~~~v~f~~~p~~~~~~~~~~ 450 (515)
T 2jis_A 375 VVQCGRRVDCLKLWLMWKAQGDQGLERRIDQAFVLARYLVEEMKKR----EGFELVMEPEFVNVCFWFVPPSLRGKQESP 450 (515)
T ss_dssp CSCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS----TTEEESSCCSSSEEEEEECCGGGTTCTTST
T ss_pred CCCCCCcccHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcC----CCEEEeCCCCeeEEEEEEeCccccccccch
Confidence 1123444444444432222345566666777777766553 222111112223344433 220 000
Q ss_pred hh-------HHHHHHHHHHCCeEecc-----CCCCEEEEec-CCCCCHHHHHHHHHHHHHHHh
Q 017259 297 VS-------AYDICLKMKERGILAKP-----THDTIVRLTP-PLSISSNELQEGSKALHDVLE 346 (374)
Q Consensus 297 ~~-------~~~~~~~l~~~Gi~v~~-----~~~~~lRi~~-~~~~~~e~i~~~~~~l~~~~~ 346 (374)
.. ...+.+.|.+.|+.+.. ...+++|+++ +..+|++|+++++++|+++++
T Consensus 451 ~~~~~l~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~lRis~~~~~~t~edid~~~~~l~~~~~ 513 (515)
T 2jis_A 451 DYHERLSKVAPVLKERMVKEGSMMIGYQPHGTRGNFFRVVVANSALTCADMDFLLNELERLGQ 513 (515)
T ss_dssp THHHHHHTHHHHHHHHHHHHTSCEEEEEEETTEEEEEEEECCCTTCCHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHHhcCCEEEEEEEECCceEEEEEEeCCCCCCHHHHHHHHHHHHHHHh
Confidence 00 12367788888965522 2246899998 788999999999999998886
No 211
>2okj_A Glutamate decarboxylase 1; PLP-dependent decarboxylase, lyase; HET: LLP PLZ; 2.30A {Homo sapiens} PDB: 2okk_A*
Probab=99.87 E-value=2.5e-20 Score=180.59 Aligned_cols=305 Identities=13% Similarity=0.078 Sum_probs=184.2
Q ss_pred HHHHHHhcccCCC----eEEecCChHHHHHHHHHHHHHccc---ccccCCCCcc-EEEEeccCCCCcccccccccCCccc
Q 017259 25 VFAERLTSMFGYD----MVLPMNTGAEGVETALKLARKWGY---VKKKFSIDEA-IIVSCCGCFHGRTLAAISMSCDNEA 96 (374)
Q Consensus 25 ~l~~~l~~~~~~~----~~~~~~~gs~a~~~al~~~~~~~~---~~~G~~~~~~-~vi~~~~~yhg~~~~~~~~~~~~~~ 96 (374)
++.+++++++|.+ .+++++|||+|+..++.+++.+.+ .++|....++ +|++..++|+.....+..+ +.+.
T Consensus 136 ~~~~~la~~~g~~~~~~~~~~t~ggtea~~~al~~~~~~~~~~~~~~G~~~~~~~~v~~s~~~h~s~~~~~~~~-g~g~- 213 (504)
T 2okj_A 136 ITLKKMREIVGWSSKDGDGIFSPGGAISNMYSIMAARYKYFPEVKTKGMAAVPKLVLFTSEQSHYSIKKAGAAL-GFGT- 213 (504)
T ss_dssp HHHHHHHHHHTCCSSSCEEEEESSHHHHHHHHHHHHHHHHCTTHHHHCGGGSCCEEEEEETTSCTHHHHHHHHT-TSCG-
T ss_pred HHHHHHHHHhCCCCCCCCEEEeCCcHHHHHHHHHHHHHHHhhHHhhcCccccCCeEEEECCcchHHHHHHHHHc-CCCc-
Confidence 3556667777654 799999999999999999864210 0123110114 6777777754433332222 2110
Q ss_pred cccCCCCCCCceeccCC-----CHHHHHHHHHhc---CCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEe
Q 017259 97 IRGFGPLLPGHLKVDFG-----DITALEKIFKES---GDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIAD 168 (374)
Q Consensus 97 ~~~~~~~~~~~~~~~~~-----d~~~le~~l~~~---~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~D 168 (374)
..+..++.+ |+++|+++|++. +.++++|+++.+.+++|.+.+ +++|.++|++||+++++|
T Consensus 214 --------~~v~~v~~~~~~~~d~~~L~~~i~~~~~~g~~~~~V~~~~~~~~tG~i~~----l~~I~~la~~~g~~lhvD 281 (504)
T 2okj_A 214 --------DNVILIKCNERGKIIPADFEAKILEAKQKGYVPFYVNATAGTTVYGAFDP----IQEIADICEKYNLWLHVD 281 (504)
T ss_dssp --------GGEEEECBCTTSCBCHHHHHHHHHHHHHTTCEEEEEEECBSCSSSCCBCC----HHHHHHHHHHHTCEEEEE
T ss_pred --------ccEEEEecCCCCCCCHHHHHHHHHHHHHCCCCceEEEEeCCCCCCCCcCC----HHHHHHHHHHcCCEEEEe
Confidence 012223322 899999999742 236899999989899999988 999999999999999999
Q ss_pred ccccCCcccccCcccccCCC-CCcEEEec--ccccCCccchhhheeCH-HHHhh-c---CCCCC-CCC------------
Q 017259 169 EIQSGLARSGRMLASDWEEV-RPDMVILG--KALGGGVIPVSAVLADK-EVMLC-I---QPGEH-GST------------ 227 (374)
Q Consensus 169 ea~~~~~~~g~~~~~~~~~~-~~d~~s~s--K~~~~G~~~~G~~~~~~-~~~~~-~---~~~~~-~~~------------ 227 (374)
++|+++......+.....++ .+|+++++ |.+++++ ++|+++.++ ++... + .+... ...
T Consensus 282 ~a~~~~~~~~~~~~~~~~g~~~~D~i~~~~hK~~~~p~-~~g~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 360 (504)
T 2okj_A 282 AAWGGGLLMSRKHRHKLNGIERANSVTWNPHKMMGVLL-QCSAILVKEKGILQGCNQMCAGYLFQPDKQYDVSYDTGDKA 360 (504)
T ss_dssp ETTGGGGGGCTTTGGGGTTGGGCSEEEECTTSTTCCCS-CCEEEEESSTTHHHHHHCCCCSSSCCSCCSSCGGGCCGGGS
T ss_pred hhhhhHHHhCHhhHhhcCCcccCCEEEECchhhcCCCc-ceEEEEEECHHHHHHHhcCCCccccCCcccccCcCCcccCC
Confidence 99986533222221222233 56877765 9988777 899988875 45443 1 11110 000
Q ss_pred ----CCCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHhCCCceeeE--EEEeeeEEEEe-ccCC----C-
Q 017259 228 ----FGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEV--RGRGLFNAVEF-DKTA----L- 295 (374)
Q Consensus 228 ----~~~~~~~~~aa~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~--~~~g~~~~~~~-~~~~----~- 295 (374)
.....+.+.+++.++....-+++.++..++.+++.+.|++. |++.... .+...++.|.. +... .
T Consensus 361 ~~~~rr~~~l~~~a~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~----~~~~~~~~~~p~~~~v~f~~~~~~~~~~~~~ 436 (504)
T 2okj_A 361 IQCGRHVDIFKFWLMWKAKGTVGFENQINKCLELAEYLYAKIKNR----EEFEMVFNGEPEHTNVCFWYIPQSLRGVPDS 436 (504)
T ss_dssp SCSSCBCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC----TTEEESSSSCCSSSCEEEEECCGGGSSCCCC
T ss_pred CCCCCCccHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcC----CCEEEEecCCCCeEEEEEEEeCccccccccc
Confidence 01135555555555432111234555666666666666543 2221111 13344455543 3210 0
Q ss_pred -------chhHHHHHHHHHHCCe-Eecc--C-C-CCEEEEecC-CCCCHHHHHHHHHHHHHHHhccC
Q 017259 296 -------PVSAYDICLKMKERGI-LAKP--T-H-DTIVRLTPP-LSISSNELQEGSKALHDVLELDL 349 (374)
Q Consensus 296 -------~~~~~~~~~~l~~~Gi-~v~~--~-~-~~~lRi~~~-~~~~~e~i~~~~~~l~~~~~~~~ 349 (374)
.....++.+.|.++|+ ++.+ . + .+++|+++. ..++++|+++++++|+++++ ++
T Consensus 437 ~~~~~~~~~~~~~l~~~L~~~G~~~~~~~~~~~~~~~lRis~~~~~~t~edi~~~~~~l~~~~~-~~ 502 (504)
T 2okj_A 437 PQRREKLHKVAPKIKALMMESGTTMVGYQPQGDKANFFRMVISNPAATQSDIDFLIEEIERLGQ-DL 502 (504)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHTSCEEEEEEETTEEEEEEECCCCTTCCHHHHHHHHHHHHHHHT-C-
T ss_pred hhhHHHHHHHHHHHHHHHHhCCcEEEEeeEECCceEEEEEEeCCCCCCHHHHHHHHHHHHHHHH-HH
Confidence 0014578899999995 4432 1 2 268999985 77899999999999999887 54
No 212
>1w23_A Phosphoserine aminotransferase; pyridoxal-5'-phosphate; HET: PGE PLP EPE; 1.08A {Bacillus alcalophilus} SCOP: c.67.1.4 PDB: 2bhx_A* 2bi1_A* 2bi2_A* 2bi3_A* 2bi5_A* 2bi9_A* 2bia_A* 2bie_A* 2big_A*
Probab=99.86 E-value=2.2e-21 Score=179.72 Aligned_cols=281 Identities=12% Similarity=0.055 Sum_probs=181.6
Q ss_pred cHHHHHHHHhcccCCC---eEEecCCh-HHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccCCcccc
Q 017259 22 KFPVFAERLTSMFGYD---MVLPMNTG-AEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAI 97 (374)
Q Consensus 22 ~~~~l~~~l~~~~~~~---~~~~~~~g-s~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~ 97 (374)
.++++++++++++|.+ ++++++|+ ++|+..++..+...+ .+| +.|++..++|+.. ..+... +....
T Consensus 49 ~~~~l~~~la~~~g~~~~~~v~~~~g~gt~al~~~~~~l~~~~--~~g-----~~vi~~~~~~~~~-~~~~~~-g~~~~- 118 (360)
T 1w23_A 49 VHEQAQNLLRELLQIPNDYQILFLQGGASLQFTMLPMNLLTKG--TIG-----NYVLTGSWSEKAL-KEAKLL-GETHI- 118 (360)
T ss_dssp HHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHHHHHHCCTT--CEE-----EEEECSHHHHHHH-HHHHTT-SEEEE-
T ss_pred HHHHHHHHHHHHhCCCCCceEEEECCcchHHHHHHHHHhcCCC--Ccc-----cEEEecchhHHHH-HHHHHh-CCeEE-
Confidence 4678999999988764 79999998 999999998884211 234 6777666654321 111111 11111
Q ss_pred ccCCCCCCCceeccCCCHHHHHH-HHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEeccccCCcc
Q 017259 98 RGFGPLLPGHLKVDFGDITALEK-IFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLAR 176 (374)
Q Consensus 98 ~~~~~~~~~~~~~~~~d~~~le~-~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~~~~~ 176 (374)
.+...+. -+.|++++++ +++ ++++++++++++|++|.+.+ +++++||++||+||+|+.+..
T Consensus 119 ---v~~~~~~---~~~d~~~l~~~~i~---~~~k~v~~~~~~nptG~~~~---------~i~~~~~~~li~D~a~~~~~~ 180 (360)
T 1w23_A 119 ---AASTKAN---SYQSIPDFSEFQLN---ENDAYLHITSNNTIYGTQYQ---------NFPEINHAPLIADMSSDILSR 180 (360)
T ss_dssp ---EEECGGG---TSCSCCCGGGCCCC---TTEEEEEEESEETTTTEECS---------SCCCCCSSCEEEECTTTTTSS
T ss_pred ---eeccccc---CcCCccchHhhccC---CCCCEEEEeCCCCCcceecc---------cccccCCceEEEechhhcCCC
Confidence 0100000 0125666666 564 57999999999999998764 223389999999999985422
Q ss_pred cccCcccccCCCCCcEE--EecccccCCccchhhheeCHHHHhhcCCCC-----------CCCC-CCCCHHHHHHHHHHH
Q 017259 177 SGRMLASDWEEVRPDMV--ILGKALGGGVIPVSAVLADKEVMLCIQPGE-----------HGST-FGGNPLASAVAIASL 242 (374)
Q Consensus 177 ~g~~~~~~~~~~~~d~~--s~sK~~~~G~~~~G~~~~~~~~~~~~~~~~-----------~~~~-~~~~~~~~~aa~~al 242 (374)
..... .+ |++ |+||.++ +. ++||+++++++.+.+.... .... .+.+..++.++.+++
T Consensus 181 ---~~~~~--~~--di~~~s~sK~~~-~~-G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al 251 (360)
T 1w23_A 181 ---PLKVN--QF--GMIYAGAQKNLG-PS-GVTVVIVKKDLLNTKVEQVPTMLQYATHIKSDSLYNTPPTFSIYMLRNVL 251 (360)
T ss_dssp ---CCCGG--GC--SEEEEETTTTTS-CT-TCEEEEEEHHHHCSCCTTCCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHH
T ss_pred ---CcCcc--cC--CEEEEEcccccC-CC-CcEEEEEcHHHHhhcccCCcchhhhhhhhhccCCCCCCCHHHHHHHHHHH
Confidence 11111 12 454 6679887 33 5789999988887776532 1122 244667777777788
Q ss_pred HHHhhh----cHHHHHHHHHHHHHHHHHHHHHhCCCceee---EE-EEeeeEEEEeccCCCchhHHHHHHHHHHCCeEec
Q 017259 243 DVIRDE----KLAERSAHLGEELRQHLFKIQQQFPNYVKE---VR-GRGLFNAVEFDKTALPVSAYDICLKMKERGILAK 314 (374)
Q Consensus 243 ~~~~~~----~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~---~~-~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~ 314 (374)
+.+.+. ++.++++++.+++.+.|+++ +++... .. ..+.++++.+++.. +..++.+.|.++||.+.
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~~~gi~~~ 324 (360)
T 1w23_A 252 DWIKDLGGAEAIAKQNEEKAKIIYDTIDES----NGFYVGHAEKGSRSLMNVTFNLRNEE---LNQQFLAKAKEQGFVGL 324 (360)
T ss_dssp HHHHHTTHHHHHHHHHHHHHHHHHHHHHTT----TTSSEESSCGGGBCSSEEEEECSSHH---HHHHHHHHHHHTTEESC
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHHHHHHHc----cCcccccCCchhccCcEEEEEcCCCc---cHHHHHHHHHHCCeeee
Confidence 766442 34556666666666666543 222111 11 12447888775421 46789999999999998
Q ss_pred cCC--CCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 017259 315 PTH--DTIVRLTPPLSISSNELQEGSKALHDVLE 346 (374)
Q Consensus 315 ~~~--~~~lRi~~~~~~~~e~i~~~~~~l~~~~~ 346 (374)
++. .+++|++++...+++++++++++|+++++
T Consensus 325 ~~~~~~~~iRis~~~~~~~~~i~~~~~~l~~~~~ 358 (360)
T 1w23_A 325 NGHRSVGGCRASIYNAVPIDACIALRELMIQFKE 358 (360)
T ss_dssp BCCTTTCSEEEECCTTSCHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCeEEEEecCCCCHHHHHHHHHHHHHHHh
Confidence 864 57899999888899999999999999876
No 213
>3hbx_A GAD 1, glutamate decarboxylase 1; calmodulin-binding, lyase, pyridoxal phosphate; HET: LLP; 2.67A {Arabidopsis thaliana}
Probab=99.85 E-value=1.5e-19 Score=174.65 Aligned_cols=303 Identities=13% Similarity=0.037 Sum_probs=189.3
Q ss_pred HHHHHHhcccCCC-------eEEecCChHHHHHHHHHHHHHcccc---cccCCCCccEEEEeccCCCCcccccccccCCc
Q 017259 25 VFAERLTSMFGYD-------MVLPMNTGAEGVETALKLARKWGYV---KKKFSIDEAIIVSCCGCFHGRTLAAISMSCDN 94 (374)
Q Consensus 25 ~l~~~l~~~~~~~-------~~~~~~~gs~a~~~al~~~~~~~~~---~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~~~ 94 (374)
++.+++++++|.+ ..++++||++|+..++.+++..... .+|.+.++++|++..++|......+...+..
T Consensus 99 ~~~~~la~l~g~~~~~~~~~~g~~t~ggtea~~~a~~a~~~~~~~~~~~~G~~~~~~~vi~~~~~h~s~~~~~~~~G~~- 177 (502)
T 3hbx_A 99 RCVNMIAHLFNAPLEEAETAVGVGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPVDKPNIVTGANVQVCWEKFARYFEVE- 177 (502)
T ss_dssp HHHHHHHHHTTCCCCSSCCCEEEEESSHHHHHHHHHHHHHHHHHHHHHHTTCCCSCCEEEEETTCCHHHHHHHHHTTCE-
T ss_pred HHHHHHHHHhCCCcccccCCcceecCcHHHHHHHHHHHHHHHHhHHHHhcCCCCCCcEEEEcCCchHHHHHHHHHcCce-
Confidence 4666777777766 3457999999999999888643100 1252233348999888865443333322211
Q ss_pred cccccCCCCCCCceeccC------CCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhc------C
Q 017259 95 EAIRGFGPLLPGHLKVDF------GDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKY------N 162 (374)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~------~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~------~ 162 (374)
+..++. -|+++++++++ +++++++++.+.+++|.+.+ +++|.++|+++ |
T Consensus 178 ------------~~~v~~~~~~~~~d~~~l~~~i~---~~t~~v~~~~~~n~tG~~~~----l~~I~~ia~~~~~~~~~~ 238 (502)
T 3hbx_A 178 ------------LKEVKLSEGYYVMDPQQAVDMVD---ENTICVAAILGSTLNGEFED----VKLLNDLLVEKNKETGWD 238 (502)
T ss_dssp ------------EEEECCBTTBCSCCHHHHHHHCC---TTEEEEEEEBSCTTTCCBCC----HHHHHHHHHHHHHHHCCC
T ss_pred ------------eEEEecCCCcCcCCHHHHHHHHh---hCCEEEEEecCCCCCCcccC----HHHHHHHHHHhhhccCCC
Confidence 111221 17899999887 57889999999999999998 99999999999 9
Q ss_pred CEEEEeccccCCcc--cccCcccccCCCCCcEEEe--cccccCCccchhhheeC-HHHH-hhcC--CCCCC-------CC
Q 017259 163 ILMIADEIQSGLAR--SGRMLASDWEEVRPDMVIL--GKALGGGVIPVSAVLAD-KEVM-LCIQ--PGEHG-------ST 227 (374)
Q Consensus 163 i~li~Dea~~~~~~--~g~~~~~~~~~~~~d~~s~--sK~~~~G~~~~G~~~~~-~~~~-~~~~--~~~~~-------~~ 227 (374)
+++++|++|+++.. ..............|.+++ .|.+.++. ++|+++.+ ++.. +.+. ....+ ..
T Consensus 239 ~~l~VD~A~~~~~~p~~~~~~~~~~~~~~~D~v~~s~hK~l~~p~-g~G~~~~~~~~~l~~~~~~~~~yl~~~~~~~~~~ 317 (502)
T 3hbx_A 239 TPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGLVYA-GIGWVIWRNKEDLPEELIFHINYLGADQPTFTLN 317 (502)
T ss_dssp CCEEEECTTGGGTHHHHCTTCCCSTTSTTEEEEEEETTTTTCCCS-SCEEEEESSGGGSCGGGCEEECSSSSCEEECCSC
T ss_pred CeEEEECCccchhhhhhCcccccccCCCCceEEEECcccccCCCC-CeEEEEEeCHHHhhHHhccCcccccCCCCCcccc
Confidence 99999999986521 0111111111123455544 38776777 88887765 3333 2221 11111 11
Q ss_pred CCCCHHHHHHHHHHHHHHhhh---cHHHHHHHHHHHHHHHHHHHHHhCCCceeeEE-EEeeeEEEEeccCCCchhHHHHH
Q 017259 228 FGGNPLASAVAIASLDVIRDE---KLAERSAHLGEELRQHLFKIQQQFPNYVKEVR-GRGLFNAVEFDKTALPVSAYDIC 303 (374)
Q Consensus 228 ~~~~~~~~~aa~~al~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~ 303 (374)
++.+.....+..++++.+..+ +..++..++.+++.+.|++.. ++..... +..+++.|.++... ..+..++.
T Consensus 318 ~sr~~~~~~a~~~al~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~----~~~~~~~~~~~~~v~f~~~~~~-~~~~~~l~ 392 (502)
T 3hbx_A 318 FSKGSSQVIAQYYQLIRLGHEGYRNVMENCRENMIVLREGLEKTE----RFNIVSKDEGVPLVAFSLKDSS-CHTEFEIS 392 (502)
T ss_dssp CSCBSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT----CEEECSCSSSSSEEEEEESSCS-SCCHHHHH
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC----CEEEEeCCCCceEEEEEecCCC-cCCHHHHH
Confidence 222233444455555555443 345555666666666665542 1221112 34567777775421 11466899
Q ss_pred HHHHHCCeEeccC-------CCCEEEEecCCCCCHHHHHHHHHHHHHHHhccCCcCCC
Q 017259 304 LKMKERGILAKPT-------HDTIVRLTPPLSISSNELQEGSKALHDVLELDLPKMRK 354 (374)
Q Consensus 304 ~~l~~~Gi~v~~~-------~~~~lRi~~~~~~~~e~i~~~~~~l~~~~~~~~~~~~~ 354 (374)
+.|.++|+++... +...+||+++...+.++++.+++.|+++++ .+.....
T Consensus 393 ~~L~~~Gi~v~~~~~p~~~~~~~~lRisv~~~~t~edid~li~~L~~~l~-~l~~~~~ 449 (502)
T 3hbx_A 393 DMLRRYGWIVPAYTMPPNAQHITVLRVVIREDFSRTLAERLVIDIEKVMR-ELDELPS 449 (502)
T ss_dssp HHHHTTTCBCCEEECCTTCTTCEEEEEECCTTCCHHHHHHHHHHHHHHHH-HHHTCC-
T ss_pred HHHHhCCcEEeeccCCcccCCceEEEEEeCCCCCHHHHHHHHHHHHHHHH-HHHhCcc
Confidence 9999999987431 236899999999999999999999999998 7655443
No 214
>1rv3_A Serine hydroxymethyltransferase, cytosolic; one-carbon metabolism; HET: GLY PLP; 2.40A {Oryctolagus cuniculus} SCOP: c.67.1.4 PDB: 1rv4_A* 1rvu_A* 1rvy_A* 1ls3_A* 1cj0_A* 1bj4_A* 1eji_A*
Probab=99.85 E-value=2.4e-20 Score=179.46 Aligned_cols=292 Identities=14% Similarity=0.096 Sum_probs=180.2
Q ss_pred HHHHHHhcccCCCe-----EEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccCCcccccc
Q 017259 25 VFAERLTSMFGYDM-----VLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRG 99 (374)
Q Consensus 25 ~l~~~l~~~~~~~~-----~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~ 99 (374)
.+.+++++++|.+. .++.+||++++.+++.++ .++| |+|++.++.|.++...............+
T Consensus 94 ~~~~~~a~~~g~~~~~~~~~V~~~sGs~an~~~~~al-----l~pG-----D~Vl~~~~~~~~~~~~~~~~~~~~v~~~G 163 (483)
T 1rv3_A 94 LCQKRALQAYGLDPQCWGVNVQPYSGSPANFAVYTAL-----VEPH-----GRIMGLDLPDGGHLTHGFMTDKKKISATS 163 (483)
T ss_dssp HHHHHHHHHTTCCTTTEEEECCCSSHHHHHHHHHHHH-----TCTT-----CEEEEECGGGTCCGGGCCBCSSCBCSHHH
T ss_pred HHHHHHHHHhCCCcccCceEEEECCcHHHHHHHHHHh-----cCCC-----CEEEEecCccCcCcchhhhhcccCccccc
Confidence 34488888887762 255666668888888877 5677 99999999976654322211000000000
Q ss_pred --CCCCCCCceeccC-CCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEecccc-CCc
Q 017259 100 --FGPLLPGHLKVDF-GDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQS-GLA 175 (374)
Q Consensus 100 --~~~~~~~~~~~~~-~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~-~~~ 175 (374)
+.++..++..-.+ .|+++|++++++. ++++|++ +..+++ .+.+ +++|.++|++||++||+|++|+ |+.
T Consensus 164 ~~~~~v~~~~~~~~~~iD~d~le~~i~~~--~tklIi~-~~sn~~-~~~d----l~~i~~ia~~~g~~livD~ah~~g~~ 235 (483)
T 1rv3_A 164 IFFESMAYKVNPDTGYIDYDRLEENARLF--HPKLIIA-GTSCYS-RNLD----YGRLRKIADENGAYLMADMAHISGLV 235 (483)
T ss_dssp HHSEEEEECBCTTTCSBCHHHHHHHHHHH--CCSEEEE-CCSSCC-SCCC----HHHHHHHHHHTTCEEEEECTTTHHHH
T ss_pred ceEEEEECccccCCCcCCHHHHHHHHhhc--CCcEEEE-eCCcCC-CcCC----HHHHHHHHHHcCCEEEEEccchhccc
Confidence 0000000000001 2799999999743 5778888 665555 6666 9999999999999999999987 432
Q ss_pred ccccC-cccccCCCCCcEE--EecccccCCccchhhheeCHHH---------------HhhcCCC-CCCCCCCCCHHHHH
Q 017259 176 RSGRM-LASDWEEVRPDMV--ILGKALGGGVIPVSAVLADKEV---------------MLCIQPG-EHGSTFGGNPLASA 236 (374)
Q Consensus 176 ~~g~~-~~~~~~~~~~d~~--s~sK~~~~G~~~~G~~~~~~~~---------------~~~~~~~-~~~~~~~~~~~~~~ 236 (374)
..+.. ..+ . ..|++ |++|+++ |+ ++|++++++++ .+.+... ..+...+++...++
T Consensus 236 ~~~~~~~p~---~-~~div~~s~~K~l~-Gp-rgG~i~~~~~~~~~~~~~g~~~~y~~~~~~~~~~~~~~~g~~~~~~ia 309 (483)
T 1rv3_A 236 VAGVVPSPF---E-HCHVVTTTTHKTLR-GC-RAGMIFYRRGVRSVDPKTGKEILYNLESLINSAVFPGLQGGPHNHAIA 309 (483)
T ss_dssp HHTSSCCGG---G-TCSEEEEESSGGGC-CC-SCEEEEEECSBCC-------CCBCCHHHHHHHHHTTTTCCSCCHHHHH
T ss_pred ccCCCCCCC---C-CCcEEEecCcccCC-CC-CceEEEEcchhhhhccccCcchhhHHHHHhhhhcCCcccCCccHHHHH
Confidence 22211 111 1 34665 5669985 55 67998887642 2222111 01112234455556
Q ss_pred HHHHHHHHHhh---hcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCchhHHHHHHHHHHCCeEe
Q 017259 237 VAIASLDVIRD---EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILA 313 (374)
Q Consensus 237 aa~~al~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v 313 (374)
+..++++.+.. +++.++++++.+++.+.|++.+ + .++.. .....++++.+... +.+..++.+.|.+.||.+
T Consensus 310 al~~Al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g--~-~~~~~-~~~~~~~~v~~~~~--g~~~~~~~~~L~~~gI~v 383 (483)
T 1rv3_A 310 GVAVALKQAMTPEFKEYQRQVVANCRALSAALVELG--Y-KIVTG-GSDNHLILVDLRSK--GTDGGRAEKVLEACSIAC 383 (483)
T ss_dssp HHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHTT--C-EEGGG-SCSSSEEEEEGGGG--TCCHHHHHHHHHHTTEEC
T ss_pred HHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHhcC--C-EeccC-CCCCceEEEeccCC--CCCHHHHHHHHHhCCcEE
Confidence 66667776543 3566777778888888777652 1 11111 01224566666431 115778888898999999
Q ss_pred c----cCC-----CCEEEEecCCCCC----HHHHHHHHHHHHHHHh
Q 017259 314 K----PTH-----DTIVRLTPPLSIS----SNELQEGSKALHDVLE 346 (374)
Q Consensus 314 ~----~~~-----~~~lRi~~~~~~~----~e~i~~~~~~l~~~~~ 346 (374)
. |+. .+++||+++...+ ++|+++++++|+++++
T Consensus 384 ~~~~~pg~~~~~~~~~iRis~~~~~t~g~~~edi~~~~~~l~~~l~ 429 (483)
T 1rv3_A 384 NKNTCPGDKSALRPSGLRLGTPALTSRGLLEKDFQKVAHFIHRGIE 429 (483)
T ss_dssp EEECCSSCSCTTSCCEEEEECHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred ecCCCCCCCcCCCCceEEeecCCcccCCCCHHHHHHHHHHHHHHHH
Confidence 8 642 4799999876555 9999999999999987
No 215
>2c0r_A PSAT, phosphoserine aminotransferase; pyridoxal-5'-phosphate, pyridine serine biosynthesis, amino-acid biosynthesis, pyridoxal phosphate; HET: PLP; 1.2A {Bacillus circulans} SCOP: c.67.1.4 PDB: 1bt4_A* 1w3u_A*
Probab=99.84 E-value=1.6e-20 Score=174.15 Aligned_cols=282 Identities=9% Similarity=0.035 Sum_probs=181.1
Q ss_pred cHHHHHHHHhcccCCC---eE-EecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcc--cccccccCCcc
Q 017259 22 KFPVFAERLTSMFGYD---MV-LPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRT--LAAISMSCDNE 95 (374)
Q Consensus 22 ~~~~l~~~l~~~~~~~---~~-~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~--~~~~~~~~~~~ 95 (374)
.++++++++++++|.+ ++ ++|+|++++++.++..+ .++| |+|++..+.+++.. ..+...+ ...
T Consensus 50 ~~~~~~~~la~~~g~~~~~~~i~~t~g~t~a~~~~~~~l-----~~~g-----d~vl~~~~~~~~~~~~~~~~~~g-~~~ 118 (362)
T 2c0r_A 50 VHNEAQARLLALLGNPTGYKVLFIQGGASTQFAMIPMNF-----LKEG-----QTANYVMTGSWASKALKEAKLIG-DTH 118 (362)
T ss_dssp HHHHHHHHHHHHTTCCSSEEEEEESSHHHHHHHHHHHHH-----CCTT-----CEEEEEECSHHHHHHHHHHHHHS-CEE
T ss_pred HHHHHHHHHHHHhCCCCCcEEEEECCCchHHHHHHHHhc-----CCCC-----CeEEEEecCcHhHHHHHHHHHhC-CeE
Confidence 4678899999988765 54 67899999999999988 5667 88888776654432 1111112 211
Q ss_pred ccccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcc-cCChhHHHHHHHHHHhcCCEEEEeccccCC
Q 017259 96 AIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVI-IPPDGYLKAVRDLCSKYNILMIADEIQSGL 174 (374)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~-~~~~~~l~~l~~l~~~~~i~li~Dea~~~~ 174 (374)
+.. ..+. .+... ..|.++++ ++ ++++++++++++|++|.. .+ +++| ||+++|+|++|+.+
T Consensus 119 ~v~-~~~~-~~~~~--~~~~~~~~--i~---~~t~~v~~~~~~n~tG~~~~~----l~~i------~~~~vivD~a~~~~ 179 (362)
T 2c0r_A 119 VAA-SSEA-SNYMT--LPKLQEIQ--LQ---DNAAYLHLTSNETIEGAQFKA----FPDT------GSVPLIGDMSSDIL 179 (362)
T ss_dssp EEE-ECGG-GTTCS--CCCGGGCC--CC---TTEEEEEEESEETTTTEECSS----CCCC------TTSCEEEECTTTTT
T ss_pred EEe-cccc-ccccc--CCCHHHcc--cC---CCcCEEEEeCCcCccceeccc----cccc------CCCEEEEEChhhcc
Confidence 110 0000 00000 01333332 33 579999999889999986 44 5555 89999999999833
Q ss_pred cccccCcccccCCCCCcEE--EecccccCCccchhhheeCHHHHhhcCCCC------------CCCCCCCCHHHHHHHHH
Q 017259 175 ARSGRMLASDWEEVRPDMV--ILGKALGGGVIPVSAVLADKEVMLCIQPGE------------HGSTFGGNPLASAVAIA 240 (374)
Q Consensus 175 ~~~g~~~~~~~~~~~~d~~--s~sK~~~~G~~~~G~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~aa~~ 240 (374)
. ...... .. |++ |++|.++ .. ++||+++++++.+.+.... ....++.+.+++.++.+
T Consensus 180 ~---~~~~~~--~~--d~~~~s~~K~~g-~~-G~G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~ 250 (362)
T 2c0r_A 180 S---RPFDLN--QF--GLVYAGAQKNLG-PS-GVTVVIVREDLVAESPKHLPTMLRYDTYVKNNSLYNTPPSFGIYMVNE 250 (362)
T ss_dssp S---SCCCGG--GC--SEEEEETTTTTC-CS-SCEEEEEEGGGSSSCCTTSCGGGCHHHHHHTTTCSSCCCHHHHHHHHH
T ss_pred C---Cccchh--HC--cEEEEecccccc-Cc-CcEEEEEcHHHHhhccccCchHHhHHHHhhccCcCCCchHHHHHHHHH
Confidence 1 111111 22 544 7789996 33 4688999988877765420 12345678888899999
Q ss_pred HHHHHhh----hcHHHHHHHHHHHHHHHHHHHHHhCCCceee-EEEEeeeEEEEeccCCCchhHHHHHHHHHHCCeEecc
Q 017259 241 SLDVIRD----EKLAERSAHLGEELRQHLFKIQQQFPNYVKE-VRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKP 315 (374)
Q Consensus 241 al~~~~~----~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~ 315 (374)
+++.+.+ +.+.++.+++++++.+.|+++...++ .... ....+.++++.+++. .+..++++.|.++||.+.+
T Consensus 251 al~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~-~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~L~~~gi~~~~ 326 (362)
T 2c0r_A 251 VLKWIEERGGLEGVQQANRKKASLIYDAIDQSGGFYR-GCVDVDSRSDMNITFRLASE---ELEKEFVKASEQEGFVGLK 326 (362)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTSTTSSE-ESSCGGGBCSSEEEEECSCH---HHHHHHHHHHHHTTEESCB
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHcCCccc-cCCChHHcCCcEEEEEcCCc---chHHHHHHHHHHCCCeecc
Confidence 9987654 34556666666667666655420000 1000 012345566666532 2578899999999998877
Q ss_pred CC--CCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 017259 316 TH--DTIVRLTPPLSISSNELQEGSKALHDVLE 346 (374)
Q Consensus 316 ~~--~~~lRi~~~~~~~~e~i~~~~~~l~~~~~ 346 (374)
+. .+++||+++..+++++++++++.|+++++
T Consensus 327 g~~~~~~iRis~~~~~~~e~i~~l~~~l~~~~~ 359 (362)
T 2c0r_A 327 GHRSVGGLRASIYNAVPYESCEALVQFMEHFKR 359 (362)
T ss_dssp CCTTTCSEEEECCTTSCHHHHHHHHHHHHHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHH
Confidence 53 46799998888899999999999998876
No 216
>3vp6_A Glutamate decarboxylase 1; catalytic loop SWAP, lyase; HET: LLP HLD; 2.10A {Homo sapiens} PDB: 2okj_A* 2okk_A*
Probab=99.84 E-value=1.6e-19 Score=174.78 Aligned_cols=306 Identities=13% Similarity=0.088 Sum_probs=179.6
Q ss_pred HHHHHHHhcccCCC----eEEecCChHHHHHHHHHHHHHccc---ccccCCC-CccEEEEeccCCCCcccccccccCCcc
Q 017259 24 PVFAERLTSMFGYD----MVLPMNTGAEGVETALKLARKWGY---VKKKFSI-DEAIIVSCCGCFHGRTLAAISMSCDNE 95 (374)
Q Consensus 24 ~~l~~~l~~~~~~~----~~~~~~~gs~a~~~al~~~~~~~~---~~~G~~~-~~~~vi~~~~~yhg~~~~~~~~~~~~~ 95 (374)
+++.+++++++|.+ .+++++|||+|+..++.+++...+ .++|.+. .++.|++...+|+.....+. ..+...
T Consensus 138 ~~~~~~l~~~~g~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~G~~~~~~~~v~~s~~~H~s~~~~~~-~~g~g~ 216 (511)
T 3vp6_A 138 QITLKKMREIVGWSSKDGDGIFSPGGAISNMYSIMAARYKYFPEVKTKGMAAVPKLVLFTSEQSHYSIKKAGA-ALGFGT 216 (511)
T ss_dssp HHHHHHHHHHHTCCSSSCEEEEESSHHHHHHHHHHHHHHHHCTHHHHHCGGGSCCEEEEEETTSCTHHHHHHH-HTTSCG
T ss_pred HHHHHHHHHHhCCCCCCCceEECCchHHHHHHHHHHHHHHhhhhhhhcCcccCCCeEEEECCCchHHHHHHHH-HcCCCC
Confidence 33555666666654 789999999999999998865310 1122110 12678877777544433333 222110
Q ss_pred ccccCCCCCCCceeccCC-----CHHHHHHHHHhc---CCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEE
Q 017259 96 AIRGFGPLLPGHLKVDFG-----DITALEKIFKES---GDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIA 167 (374)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~-----d~~~le~~l~~~---~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~ 167 (374)
..+..++.+ |+++|+++|++. +..+++++++.+.+++|.+.+ +++|.++|++||+++++
T Consensus 217 ---------~~~~~v~~d~~~~~d~~~Le~~i~~~~~~g~~~~~vv~~~~~~~~G~vd~----l~~I~~ia~~~~~~lhv 283 (511)
T 3vp6_A 217 ---------DNVILIKCNERGKIIPADFEAKILEAKQKGYVPFYVNATAGTTVYGAFDP----IQEIADICEKYNLWLHV 283 (511)
T ss_dssp ---------GGEEEECBCTTSCBCHHHHHHHHHHHHHTTCEEEEEEEEBSCSSSCCBCC----HHHHHHHHHHHTCEEEE
T ss_pred ---------CcEEEeecCCCCccCHHHHHHHHHHHHhcCCCcEEEEEecCCCCCccccc----HHHHHHHHHHcCCEEEE
Confidence 012222222 899999999853 233889999999999999988 99999999999999999
Q ss_pred eccccCCcccccCcccccCCC-CCcEEEe--cccccCCccchhhheeCH-HHHhhcCC---CCC---CC-----------
Q 017259 168 DEIQSGLARSGRMLASDWEEV-RPDMVIL--GKALGGGVIPVSAVLADK-EVMLCIQP---GEH---GS----------- 226 (374)
Q Consensus 168 Dea~~~~~~~g~~~~~~~~~~-~~d~~s~--sK~~~~G~~~~G~~~~~~-~~~~~~~~---~~~---~~----------- 226 (374)
|++|++.......+.....++ ..|.+++ +|+++++. ..|+++.++ .+...... ... ..
T Consensus 284 D~a~~~~~~~~~~~~~~~~g~~~aDsv~~~~hK~l~~p~-g~g~l~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~ 362 (511)
T 3vp6_A 284 DAAWGGGLLMSRKHRHKLNGIERANSVTWNPHKMMGVLL-QCSAILVKEKGILQGCNQMHASYLFQQDKHYDVSYDTGDK 362 (511)
T ss_dssp EETTGGGGGGCTTTGGGGTTGGGCSEEEECTTSTTCCCS-CCEEEEESSTTHHHHHHCCCCTTTCCSSCSSCGGGCCGGG
T ss_pred EccchhhHhhChhhhhhccCCccCCEEEECcccccCCCc-CeEEEEEeCHHHHHHHhccCCccccCcccccccccCccCC
Confidence 999985322222112122222 4566655 49888766 777776654 44433211 000 00
Q ss_pred CC-CCCHHHHHHHHHHHHHHhh---hcHHHHHHHHHHHHHHHHHHHHHhCCCceeeE--EEEeeeEEEEeccCCC-----
Q 017259 227 TF-GGNPLASAVAIASLDVIRD---EKLAERSAHLGEELRQHLFKIQQQFPNYVKEV--RGRGLFNAVEFDKTAL----- 295 (374)
Q Consensus 227 ~~-~~~~~~~~aa~~al~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~--~~~g~~~~~~~~~~~~----- 295 (374)
+. .+..+.....+++++.+.. +++.++..++.+++.+.|++. |++.... .+...++.|.+.....
T Consensus 363 ~~~~~r~~~al~~~~al~~~g~~gl~~~~~~~~~~a~~l~~~L~~~----pg~~l~~~~~p~~~~v~f~~~p~~~~~~~~ 438 (511)
T 3vp6_A 363 AIQCGRHVDIFKFWLMWKAKGTVGFENQINKCLELAEYLYAKIKNR----EEFEMVFNGEPEHTNVCFWYIPQSLRGVPD 438 (511)
T ss_dssp SSCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC----TTEEESSSSCCSSSCEEEEECCGGGSSCCC
T ss_pred CCCCCCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcC----CCEEEEecCCCCeEEEEEEEeCcccccccc
Confidence 00 0111223334444444433 345666667777777776553 2222111 2334445554421110
Q ss_pred --------chhHHHHHHHHHHCCeEecc-----CCCCEEEEec-CCCCCHHHHHHHHHHHHHHHhccC
Q 017259 296 --------PVSAYDICLKMKERGILAKP-----THDTIVRLTP-PLSISSNELQEGSKALHDVLELDL 349 (374)
Q Consensus 296 --------~~~~~~~~~~l~~~Gi~v~~-----~~~~~lRi~~-~~~~~~e~i~~~~~~l~~~~~~~~ 349 (374)
.....++.+.|.++|+++.. ...+++|+++ +...+.+|++++++.|+++-+ ++
T Consensus 439 ~~~~~~~l~~~~~~l~~~L~~~G~~~~~~~~~~~~~~~lRi~~~~~~~t~~di~~ll~~i~~~~~-~~ 505 (511)
T 3vp6_A 439 SPQRREKLHKVAPKIKALMMESGTTMVGYQPQGDKANFFRMVISNPAATQSDIDFLIEEIERLGQ-DL 505 (511)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHTSCEEEEEEETTEEEEEEECCCCTTCCHHHHHHHHHHHHHHHC---
T ss_pred chhHHHHHHHHHHHHHHHHHhcCCEEEEEEEeCCceEEEEEEecCCCCCHHHHHHHHHHHHHHHH-hh
Confidence 01134689999999864432 1235799998 677899999999999998876 44
No 217
>2fyf_A PSAT, phosphoserine aminotransferase; PLP-dependent enzyme, dimer, structural genomics; HET: PLP; 1.50A {Mycobacterium tuberculosis} PDB: 3vom_A*
Probab=99.84 E-value=7.6e-21 Score=178.73 Aligned_cols=275 Identities=10% Similarity=0.044 Sum_probs=176.7
Q ss_pred cHHHHHHHHhcccCCC---eEEe-cCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccc--cccccCCcc
Q 017259 22 KFPVFAERLTSMFGYD---MVLP-MNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLA--AISMSCDNE 95 (374)
Q Consensus 22 ~~~~l~~~l~~~~~~~---~~~~-~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~--~~~~~~~~~ 95 (374)
..+++++++++++|.+ ++++ |+||++|++.+++.+. ++| .+++ ...+|+.... +....
T Consensus 79 ~~~~~~~~la~~~g~~~~~~i~~~t~g~t~al~~~~~~l~-----~~g------v~~v-~~~~~~~~~~~~~~~~~---- 142 (398)
T 2fyf_A 79 LVGRVRSGLAELFSLPDGYEVILGNGGATAFWDAAAFGLI-----DKR------SLHL-TYGEFSAKFASAVSKNP---- 142 (398)
T ss_dssp HHHHHHHHHHHHTTCCTTCEEEEEETCHHHHHHHHHHHTC-----SSC------EEEE-ECSHHHHHHHHHHHHCT----
T ss_pred HHHHHHHHHHHHhCCCCCceEEEeCCchhHHHHHHHHHhc-----CCC------eEEE-eCCHHHHHHHHHHHHhC----
Confidence 4678999999988764 7888 9999999999998872 222 1222 4444442111 11110
Q ss_pred ccccCCCCCCCceeccCCC--HHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEeccccC
Q 017259 96 AIRGFGPLLPGHLKVDFGD--ITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSG 173 (374)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~d--~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~~ 173 (374)
+...+..++.++ ..+. .++ ++++++++++++|++|.+.+ +++|.++ +|+++|+||+|+.
T Consensus 143 -------~g~~~~~v~~~~g~~~~~--~i~---~~~~~v~~~~~~nptG~~~~----~~~i~~~---~~~~vivD~a~~~ 203 (398)
T 2fyf_A 143 -------FVGEPIIITSDPGSAPEP--QTD---PSVDVIAWAHNETSTGVAVA----VRRPEGS---DDALVVIDATSGA 203 (398)
T ss_dssp -------TSCCCEEEECCTTCCCCC--CCC---TTCSEEEEESEETTTTEECC----CCCCTTC---C-CEEEEECTTTT
T ss_pred -------CCCceEEEecCCCCCCCc--ccc---CCCCEEEEeCcCCCcceecc----hHHhhhh---cCCeEEEEecccc
Confidence 001111222110 0000 122 57888988889999999987 6666665 8999999999985
Q ss_pred CcccccCcccccCCCCCcEE--EecccccCCccchhhheeCHHHHhhcCC----------CC----------CCC-CCCC
Q 017259 174 LARSGRMLASDWEEVRPDMV--ILGKALGGGVIPVSAVLADKEVMLCIQP----------GE----------HGS-TFGG 230 (374)
Q Consensus 174 ~~~~g~~~~~~~~~~~~d~~--s~sK~~~~G~~~~G~~~~~~~~~~~~~~----------~~----------~~~-~~~~ 230 (374)
+.. ..... .+|++ +++|.++++. ++|++++++++.+.+.. .. .+. .++.
T Consensus 204 ~~~---~~~~~----~~di~~~s~sK~~~~~g-g~g~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~ 275 (398)
T 2fyf_A 204 GGL---PVDIA----ETDAYYFAPQKNFASDG-GLWLAIMSPAALSRIEAIAATGRWVPDFLSLPIAVENSLKNQTYNTP 275 (398)
T ss_dssp TTS---CCCGG----GCSEEEECTTSTTCSCS-SEEEEEECHHHHHHHHHHHHTTCCCCGGGCHHHHHHHHTTTCCSSCC
T ss_pred CCc---ccCcc----cCcEEEEecCcccCCCC-ceEEEEECHHHHHHhhcccccCCCCCcEEehHHHhhhcccCCCCCCC
Confidence 422 11111 24666 5569999765 68899999888776521 00 012 2355
Q ss_pred CHHHHHHHHHHHHHHhhh----cHHHHHHHHHHHHHHHHHHHHHhCCCceeeE--E--EEeeeEEEEeccCCCchhHHHH
Q 017259 231 NPLASAVAIASLDVIRDE----KLAERSAHLGEELRQHLFKIQQQFPNYVKEV--R--GRGLFNAVEFDKTALPVSAYDI 302 (374)
Q Consensus 231 ~~~~~~aa~~al~~~~~~----~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~--~--~~g~~~~~~~~~~~~~~~~~~~ 302 (374)
+..++.++.++++.+.+. ++.++.+++++++.+.|+++ |++.... + ..+.++++.++... +..++
T Consensus 276 ~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~~l~~~L~~~----~g~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l 348 (398)
T 2fyf_A 276 AIATLALLAEQIDWLVGNGGLDWAVKRTADSSQRLYSWAQER----PYTTPFVTDPGLRSQVVGTIDFVDDV---DAGTV 348 (398)
T ss_dssp CHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHS----TTEEESCCSGGGBCSSEEEEEECTTS---CHHHH
T ss_pred CHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHc----CCceeccCChhhcCCcEEEEECCCCC---CHHHH
Confidence 777777788888765443 34566666677777766654 2221111 1 12337888886433 67899
Q ss_pred HHHHHHCCeEeccCC----CCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 017259 303 CLKMKERGILAKPTH----DTIVRLTPPLSISSNELQEGSKALHDVLE 346 (374)
Q Consensus 303 ~~~l~~~Gi~v~~~~----~~~lRi~~~~~~~~e~i~~~~~~l~~~~~ 346 (374)
.+.|.++||.++++. .+++||+++..++++|+++++++|+++++
T Consensus 349 ~~~L~~~gI~v~~g~~~~~~~~iRis~~~~~t~e~i~~~~~~l~~~l~ 396 (398)
T 2fyf_A 349 AKILRANGIVDTEPYRKLGRNQLRVAMFPAVEPDDVSALTECVDWVVE 396 (398)
T ss_dssp HHHHHHTTCBCCSCCTTTCSSEEEEECCTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCcEEecCcccCCCCEEEEEecCCCCHHHHHHHHHHHHHHHH
Confidence 999999999998742 47999998888899999999999999887
No 218
>2hox_A ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINASE; HET: NAG FUC BMA P1T; 1.40A {Allium sativum} SCOP: c.67.1.1 PDB: 2hor_A* 1lk9_A*
Probab=99.84 E-value=5.2e-21 Score=181.35 Aligned_cols=279 Identities=9% Similarity=-0.009 Sum_probs=178.5
Q ss_pred HHHHHHHHhccc--------CCCeEEecCChHHHHHHHHHHHHHc---ccccccCCCCccEEEEeccCCCCccccccccc
Q 017259 23 FPVFAERLTSMF--------GYDMVLPMNTGAEGVETALKLARKW---GYVKKKFSIDEAIIVSCCGCFHGRTLAAISMS 91 (374)
Q Consensus 23 ~~~l~~~l~~~~--------~~~~~~~~~~gs~a~~~al~~~~~~---~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~ 91 (374)
..+|++.+++++ ..+++++|+|+++++..++.++... ...++| |+|++..|+|.++.......+
T Consensus 102 ~~~lr~aia~~~~~~~~~~~~~~~iv~t~G~~~al~~~~~~l~~~~~~~~~~~G-----d~Vlv~~P~y~~~~~~~~~~g 176 (427)
T 2hox_A 102 SFELEKTIKELHEVVGNAAAKDRYIVFGVGVTQLIHGLVISLSPNMTATPDAPE-----SKVVAHAPFYPVFREQTKYFD 176 (427)
T ss_dssp CHHHHHHHHHHHHHHTCBCCTTCEEEEESHHHHHHHHHHHHHSCCTTTCTTSCC-----EEEEECSSCCHHHHHHHHHSC
T ss_pred hHHHHHHHHHHHHHhCCcCCCCCEEEEeCCHHHHHHHHHHHHhhccccccCCCC-----CEEEEeCCCcccHHHHHHHcC
Confidence 566777777655 2568999999999999999887100 002355 999999999977655544433
Q ss_pred CCccccccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEeccc
Q 017259 92 CDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQ 171 (374)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~ 171 (374)
... .... .|+++|+++++ ++++++++++++||+|.+.+ +.+ + ++..|.|+++
T Consensus 177 ~~~-------------~~~~-~d~~~l~~~~~---~~~k~v~l~~p~NPtG~~~~--~~l-------~--~~~~i~d~~~ 228 (427)
T 2hox_A 177 KKG-------------YVWA-GNAANYVNVSN---PEQYIEMVTSPNNPEGLLRH--AVI-------K--GCKSIYDMVY 228 (427)
T ss_dssp BTT-------------EEEE-EEGGGGTTCSC---GGGEEEEEESSCTTTCCCCC--CSS-------T--TCEEEEECTT
T ss_pred Cee-------------eeec-CCHHHHHHhhc---CCceEEEEcCCCCCcccccH--HHH-------c--CCCEEEeecc
Confidence 221 1111 16777776665 36788888888999998884 322 2 5667788776
Q ss_pred cCCcccccCccccc-CCCCCcEEEeccccc-CCccchhhhee-CHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHh--
Q 017259 172 SGLARSGRMLASDW-EEVRPDMVILGKALG-GGVIPVSAVLA-DKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIR-- 246 (374)
Q Consensus 172 ~~~~~~g~~~~~~~-~~~~~d~~s~sK~~~-~G~~~~G~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~aa~~al~~~~-- 246 (374)
.+ ........ .+...-+.||||.++ +|+ |+||+++ ++++.+.+........++.+.+++.++.++++...
T Consensus 229 ~~----~~~s~~~~~~~~~i~~~S~SK~~g~~G~-RiG~~~~~~~~l~~~l~~~~~~~~~~~~~~~q~a~~~~L~~~~~~ 303 (427)
T 2hox_A 229 YW----PHYTPIKYKADEDILLFTMSKFTGHSGS-RFGWALIKDESVYNNLLNYMTKNTEGTPRETQLRSLKVLKEVVAM 303 (427)
T ss_dssp CS----TTTSCCCSCBCCSEEEEEHHHHTSCGGG-CCEEEEECCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHHHHH
T ss_pred cC----CCCCccccCCCceEEEEeChhcCCCCCc-eEEEEEECCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhcchhh
Confidence 42 11101111 111122348999998 799 9999998 58888887754333446778899988888887532
Q ss_pred -------hhcHHHHHHHHHHHHHHHHHHHHHhCCCcee--------------eEEEEeeeEEEEeccCCCchhHHHHHHH
Q 017259 247 -------DEKLAERSAHLGEELRQHLFKIQQQFPNYVK--------------EVRGRGLFNAVEFDKTALPVSAYDICLK 305 (374)
Q Consensus 247 -------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--------------~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 305 (374)
.+++.++.++..+..++.+.+....++++.. ..+..+.++|+.++. +..++++.
T Consensus 304 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~p~~g~f~~~~~~~-----~~~~~~~~ 378 (427)
T 2hox_A 304 VKTQKGTMRDLNTFGFKKLRERWVNITALLDQSDRFSYQELPQSEYCNYFRRMRPPSPSYAWVKCEW-----EEDKDCYQ 378 (427)
T ss_dssp HHHHTTSTTSHHHHHHHHHHHHHHHHHHHHTTSSSEECCCCCSCEEETTTTEEECCCCSEEEEEECS-----GGGCSHHH
T ss_pred hccccchhHHHHHHHHHHHHHHHHHHHHHHHhCcCccccccccccccccccccCCCCceEEEEECCC-----cHHHHHHH
Confidence 1233333333333333334333333222211 012236778888864 24567777
Q ss_pred HH-HCCeEeccC-----CCCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 017259 306 MK-ERGILAKPT-----HDTIVRLTPPLSISSNELQEGSKALHDVLE 346 (374)
Q Consensus 306 l~-~~Gi~v~~~-----~~~~lRi~~~~~~~~e~i~~~~~~l~~~~~ 346 (374)
|+ ++||.++++ ..+++|+++. .+++++++++++|+++++
T Consensus 379 ll~~~gI~v~pg~~f~~~~~~~Ris~~--~~~e~l~~~l~~l~~~~~ 423 (427)
T 2hox_A 379 TFQNGRINTQNGVGFEASSRYVRLSLI--KTQDDFDQLMYYLKDMVK 423 (427)
T ss_dssp HHHHTTEECEEGGGGTSCTTEEEEECS--SCHHHHHHHHHHHHHHHT
T ss_pred HHHHCCEEEcCCCccCCCCCEEEEEec--CCHHHHHHHHHHHHHHHh
Confidence 76 789999885 2689999965 588999999999999887
No 219
>1js3_A DDC;, DOPA decarboxylase; carbidopa, parkinson'S disease, vitamin; HET: PLP 142; 2.25A {Sus scrofa} SCOP: c.67.1.6 PDB: 1js6_A* 3rch_A* 3rbl_A 3rbf_A*
Probab=99.83 E-value=2.9e-19 Score=172.27 Aligned_cols=295 Identities=11% Similarity=0.035 Sum_probs=176.8
Q ss_pred HHHHHHhcccCCC-----------eEEecCChHHHHHHHHHHHHHccccc----c-cCC------CCccEEEEeccCCCC
Q 017259 25 VFAERLTSMFGYD-----------MVLPMNTGAEGVETALKLARKWGYVK----K-KFS------IDEAIIVSCCGCFHG 82 (374)
Q Consensus 25 ~l~~~l~~~~~~~-----------~~~~~~~gs~a~~~al~~~~~~~~~~----~-G~~------~~~~~vi~~~~~yhg 82 (374)
++.+++++++|.+ .+++|+|||+|+..++.+++... .+ + | + .++..|++..++|+.
T Consensus 117 ~~~~~la~l~g~~~~~~~~~~~~~~~v~t~ggTeA~~~al~~~~~~~-~~~~~~~~g-d~~~~~~~~~~~v~~s~~~h~s 194 (486)
T 1js3_A 117 VMMDWLGKMLQLPEAFLAGEAGEGGGVIQGSASEATLVALLAARTKV-VRRLQAASP-GLTQGAVLEKLVAYASDQAHSS 194 (486)
T ss_dssp HHHHHHHHHTTCCGGGCCTTTCSCEEEEESCHHHHHHHHHHHHHHHH-HHHHHHHST-TCCHHHHHHHEEEEEETTCCHH
T ss_pred HHHHHHHHHhCCCchhcccCCCCCCeEEcCCcHHHHHHHHHHHHHHH-hhhhhccCc-cchhcccCCCEEEEECCCCcHH
Confidence 4555667766665 47999999999999998876421 11 0 2 0 001236777777655
Q ss_pred cccccccccCCccccccCCCCCCCceeccC-----CCHHHHHHHHHhcC---CcEEEEEEccccCCCCcccCChhHHHHH
Q 017259 83 RTLAAISMSCDNEAIRGFGPLLPGHLKVDF-----GDITALEKIFKESG---DQIAGFLFEPIQGEAGVIIPPDGYLKAV 154 (374)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~d~~~le~~l~~~~---~~~~~vi~~~~~~~~g~~~~~~~~l~~l 154 (374)
....+...+.. +..++. -|+++|+++|++.. ..+.+++++.+.+++|.+.+ +++|
T Consensus 195 ~~~~~~~~G~~-------------v~~v~~d~~~~~d~~~L~~~i~~~~~~g~~p~~vv~~~~~n~tG~~~~----l~~I 257 (486)
T 1js3_A 195 VERAGLIGGVK-------------LKAIPSDGKFAMRASALQEALERDKAAGLIPFFVVATLGTTSCCSFDN----LLEV 257 (486)
T ss_dssp HHHHHHHHTCE-------------EEEECCCTTSCCCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCC----HHHH
T ss_pred HHHHHHhCCCc-------------eEEeecCCCCCCCHHHHHHHHHHHHhCCCCceEEEEeCCCCCCCCCCC----HHHH
Confidence 43333322211 122222 18999999997421 12357777778888998888 9999
Q ss_pred HHHHHhcCCEEEEeccccCCcccccCcccccCCC-CCcEEEe--cccccCCccchhhheeCHH--HHhhcCCC---CCC-
Q 017259 155 RDLCSKYNILMIADEIQSGLARSGRMLASDWEEV-RPDMVIL--GKALGGGVIPVSAVLADKE--VMLCIQPG---EHG- 225 (374)
Q Consensus 155 ~~l~~~~~i~li~Dea~~~~~~~g~~~~~~~~~~-~~d~~s~--sK~~~~G~~~~G~~~~~~~--~~~~~~~~---~~~- 225 (374)
.++|++||+++++|++|+++......+.....++ ..|.+++ +|.+++++ ++|+++.+++ +.+.+... ...
T Consensus 258 ~~la~~~~~~lhvD~a~g~~~~~~~~~~~~~~g~~~adsi~~~~hK~~~~p~-~~G~l~~~~~~~l~~~~~~~~~yl~~~ 336 (486)
T 1js3_A 258 GPICHEEDIWLHVDAAYAGSAFICPEFRHLLNGVEFADSFNFNPHKWLLVNF-DCSAMWVKRRTDLTGAFKLDPVYLKHS 336 (486)
T ss_dssp HHHHHHTTCEEEEECTTGGGGGGSTTTGGGGTTGGGCSEEEECHHHHSSCCS-SCEEEEESCHHHHHGGGC---------
T ss_pred HHHHHHcCCEEEEehhhHHHHHHCHHHHHHhcCccccCeeEEchhhhcCCCc-ceEEEEEeCHHHHHHHhcCCchhhCCC
Confidence 9999999999999999986422111111111121 3466655 49888777 8899887643 23444210 000
Q ss_pred ----------------CCCCCCHHHHHHHHHHHHHHhhh---cHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeE
Q 017259 226 ----------------STFGGNPLASAVAIASLDVIRDE---KLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFN 286 (374)
Q Consensus 226 ----------------~~~~~~~~~~~aa~~al~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~ 286 (374)
.+.....+.+. ++++.+..+ ++.++..++.+++.+.|++. |++....++...++
T Consensus 337 ~~~~~~~~~~~~~~~~~~rr~~~~~~~---~al~~~g~~g~~~~~~~~~~~a~~l~~~L~~~----~~~~~~~~~~~~~v 409 (486)
T 1js3_A 337 HQGSGLITDYRHWQLPLGRRFRSLKMW---FVFRMYGVKGLQAYIRKHVQLSHEFEAFVLQD----PRFEVCAEVTLGLV 409 (486)
T ss_dssp ---CCSCCCGGGSSSCSCCCCTHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----TTEEECSCCCSSEE
T ss_pred cccccCCCCccccCCCCCCchhHHHHH---HHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcC----CCeEEeCCCceeEE
Confidence 00012333333 344433332 45566666677777766653 22222112345566
Q ss_pred EEEeccCCCchhHHHHHHHHHHCCeEec-c---CCCCEEEEec-CCCCCHHHHHHHHHHHHHHHhccC
Q 017259 287 AVEFDKTALPVSAYDICLKMKERGILAK-P---THDTIVRLTP-PLSISSNELQEGSKALHDVLELDL 349 (374)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~l~~~Gi~v~-~---~~~~~lRi~~-~~~~~~e~i~~~~~~l~~~~~~~~ 349 (374)
.|.++.. .....++.+.|.++|+++. + .+.+++|+++ ....+++++++++++|+++++ ++
T Consensus 410 ~f~~~~~--~~~~~~l~~~L~~~g~~~~~~~~~~~~~~lRi~~~~~~~t~~di~~~~~~l~~~~~-~~ 474 (486)
T 1js3_A 410 CFRLKGS--DGLNEALLERINSARKIHLVPCRLRGQFVLRFAICSRKVESGHVRLAWEHIRGLAA-EL 474 (486)
T ss_dssp EEEESSC--HHHHHHHHHHHHHHTSCBCEEEEETTEEEEEEECCCTTCCHHHHHHHHHHHHHHHH-HH
T ss_pred EEEecCh--HHHHHHHHHHHHhcCCEEEEEEEECCEEEEEEEeCCCCCCHHHHHHHHHHHHHHHH-HH
Confidence 6666432 0125789999998886543 2 2357999996 445789999999999999987 55
No 220
>4e1o_A HDC, histidine decarboxylase; lyase; HET: PLP PVH; 1.80A {Homo sapiens}
Probab=99.83 E-value=4.1e-19 Score=170.87 Aligned_cols=299 Identities=11% Similarity=0.037 Sum_probs=178.5
Q ss_pred HHHHHhcccCCC------------eEEecCChHHHHHHHHHHHHHccccc---ccCC------CCccEEEEeccCCCCcc
Q 017259 26 FAERLTSMFGYD------------MVLPMNTGAEGVETALKLARKWGYVK---KKFS------IDEAIIVSCCGCFHGRT 84 (374)
Q Consensus 26 l~~~l~~~~~~~------------~~~~~~~gs~a~~~al~~~~~~~~~~---~G~~------~~~~~vi~~~~~yhg~~ 84 (374)
+.+++++.+|.+ ..++++|||+|+..++.+++.....+ .|.. ..+++|++...+++...
T Consensus 123 v~~~l~~l~g~~~~~~~~~~~~~~~g~~~~ggt~an~~al~~ar~~~~~~~~~~~~~~~~~~~~~~~~v~~s~~~H~s~~ 202 (481)
T 4e1o_A 123 VMDWLAKMLGLPEHFLHHHPSSQGGGVLQSTVSESTLIALLAARKNKILEMKTSEPDADESSLNARLVAYASDQAHSSVE 202 (481)
T ss_dssp HHHHHHHHHTCCGGGCTTCTTCBCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHTTEEEEEETTSCHHHH
T ss_pred HHHHHHHHhCCChhhhccccCCCCceEEeCchHHHHHHHHHHHHHHHHHHhhhcCcccccccccCCeEEEEcCcchHHHH
Confidence 444556666654 56999999999999999987542110 0100 01267777777754433
Q ss_pred cccccccCCccccccCCCCCCCceeccCC-----CHHHHHHHHHhc---CCcEEEEEEccccCCCCcccCChhHHHHHHH
Q 017259 85 LAAISMSCDNEAIRGFGPLLPGHLKVDFG-----DITALEKIFKES---GDQIAGFLFEPIQGEAGVIIPPDGYLKAVRD 156 (374)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----d~~~le~~l~~~---~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~ 156 (374)
.+..+.+. .+..++.+ |+++|+++|++. +..+.+++++.+.+++|.+.+ +++|.+
T Consensus 203 -~~~~~~g~------------~~~~v~~~~~~~~d~~~Le~~i~~~~~~g~~~~~vv~~~~~t~~G~id~----l~~I~~ 265 (481)
T 4e1o_A 203 -KAGLISLV------------KMKFLPVDDNFSLRGEALQKAIEEDKQRGLVPVFVCATLGTTGVCAFDC----LSELGP 265 (481)
T ss_dssp -HHHHHHTC------------EEEEECCCTTSCCCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCC----HHHHHH
T ss_pred -HHHHhCCC------------ceEEEEcCCCCcCCHHHHHHHHHHHHhCCCCcEEEEEecCCCCCcCcCC----HHHHHH
Confidence 33223321 12222222 899999999853 123677777778888898888 999999
Q ss_pred HHHhcCCEEEEeccccCCcccccCcccccCCC-CCcEEEec--ccccCCccchhhheeCH-HHH-hhcCCC--CC-----
Q 017259 157 LCSKYNILMIADEIQSGLARSGRMLASDWEEV-RPDMVILG--KALGGGVIPVSAVLADK-EVM-LCIQPG--EH----- 224 (374)
Q Consensus 157 l~~~~~i~li~Dea~~~~~~~g~~~~~~~~~~-~~d~~s~s--K~~~~G~~~~G~~~~~~-~~~-~~~~~~--~~----- 224 (374)
+|++||+++++|++|++.......+.....++ ..|.++++ |++++.. ..|+++.++ ... +.+... ..
T Consensus 266 la~~~~~~lhvDaA~g~~~~~~~~~~~~~~gi~~aDsi~~~~hK~l~~p~-g~g~l~~~~~~~l~~~~~~~~~yl~~~~~ 344 (481)
T 4e1o_A 266 ICAREGLWLHIDAAYAGTAFLCPEFRGFLKGIEYADSFTFNPSKWMMVHF-DCTGFWVKDKYKLQQTFSVNPIYLRHANS 344 (481)
T ss_dssp HHHHHTCEEEEECTTGGGGGGSGGGGGGGTTGGGCSEEEECHHHHSSCCS-SCEEEEESBHHHHHTTTCCCCGGGCCTTT
T ss_pred HHHHcCCeEEeehhhHHHHHhChhhHHHhcCcccCCEEEEChHHhcCCCC-ceEEEEEeCHHHHHHHhcCCchhccCccc
Confidence 99999999999999985422222112111232 34777664 9888766 667766554 332 222110 00
Q ss_pred CC-------CC-CCCHHHHHHHHHHHHHHhh---hcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccC
Q 017259 225 GS-------TF-GGNPLASAVAIASLDVIRD---EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKT 293 (374)
Q Consensus 225 ~~-------~~-~~~~~~~~aa~~al~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 293 (374)
.. +. .+..+......++++.+.. +++.++..++.+++.+.|++. |++....++...+++|.++..
T Consensus 345 ~~~~~~~~~~~~~~r~~~~l~~~~al~~~g~~g~~~~~~~~~~~a~~l~~~L~~~----~g~~~~~~~~~~~v~f~~~~~ 420 (481)
T 4e1o_A 345 GVATDFMHWQIPLSRRFRSVKLWFVIRSFGVKNLQAHVRHGTEMAKYFESLVRND----PSFEIPAKRHLGLVVFRLKGP 420 (481)
T ss_dssp TTSCCGGGGSSSSCCCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC----TTEECCSCCCSSEEEEEESSC
T ss_pred CCCCCcccccccCCCCccHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcC----CCeEEecCCceeEEEEEeCCc
Confidence 00 00 0101122333444444333 345666666777777766554 222221233456677776432
Q ss_pred CCchhHHHHHHHHHHCCe-Eecc---CCCCEEEEecCC-CCCHHHHHHHHHHHHHHHhccC
Q 017259 294 ALPVSAYDICLKMKERGI-LAKP---THDTIVRLTPPL-SISSNELQEGSKALHDVLELDL 349 (374)
Q Consensus 294 ~~~~~~~~~~~~l~~~Gi-~v~~---~~~~~lRi~~~~-~~~~e~i~~~~~~l~~~~~~~~ 349 (374)
.....++.+.|.++|+ ++.+ .+..++|+++.. ..+++|+++++++|+++.+ ++
T Consensus 421 --~~~~~~l~~~L~~~g~~~~~~~~~~g~~~lR~~~~~~~tt~~di~~~~~~i~~~~~-~l 478 (481)
T 4e1o_A 421 --NSLTENVLKEIAKAGRLFLIPATIQDKLIIRFTVTSQFTTRDDILRDWNLIRDAAT-LI 478 (481)
T ss_dssp --HHHHHHHHHHHHHHCSSBCEEEEETTEEEEEEECCCTTCCHHHHHHHHHHHHHHHH-HH
T ss_pred --hHHHHHHHHHHHhCCeEEEEeeEECCEEEEEEEeCCCCCCHHHHHHHHHHHHHHHH-HH
Confidence 1146789999999884 4443 235689999664 4489999999999999887 54
No 221
>3k40_A Aromatic-L-amino-acid decarboxylase; PLP dependent protein, alpha beta protein, alternative splicing, catecholamine biosynthesis, lyase; HET: LLP; 1.75A {Drosophila melanogaster} SCOP: c.67.1.6
Probab=99.83 E-value=7.9e-19 Score=168.51 Aligned_cols=299 Identities=11% Similarity=-0.001 Sum_probs=179.5
Q ss_pred HHHHHhcccCCC-----------eEEecCChHHHHHHHHHHHHHccccc---ccCC------CCccEEEEeccCCCCccc
Q 017259 26 FAERLTSMFGYD-----------MVLPMNTGAEGVETALKLARKWGYVK---KKFS------IDEAIIVSCCGCFHGRTL 85 (374)
Q Consensus 26 l~~~l~~~~~~~-----------~~~~~~~gs~a~~~al~~~~~~~~~~---~G~~------~~~~~vi~~~~~yhg~~~ 85 (374)
+.+++++.+|.+ ..++|+|||+|+..|+.+++.....+ .|.. ..+++|++...+++....
T Consensus 118 v~~~l~~~~g~~~~~~~~~~~~~~gv~t~ggt~anl~al~~ar~~~~~~~~~~~~~~~~~~~~~~~~vi~s~~~H~s~~~ 197 (475)
T 3k40_A 118 MMDWLGKMLELPAEFLACSGGKGGGVIQGTASESTLVALLGAKAKKLKEVKELHPEWDEHTILGKLVGYCSDQAHSSVER 197 (475)
T ss_dssp HHHHHHHHTTCCGGGCGGGTSSCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHEEEEEETTSCHHHHH
T ss_pred HHHHHHHHhCCCchhccccCCCCCeEEcCchHHHHHHHHHHHHHHHHHHhhccCcccccccccCCeEEEECCCchHHHHH
Confidence 444556666665 58999999999999999987542110 0100 012577787777544333
Q ss_pred ccccccCCccccccCCCCCCCceeccC----CCHHHHHHHHHhc---CCcEEEEEEccccCCCCcccCChhHHHHHHHHH
Q 017259 86 AAISMSCDNEAIRGFGPLLPGHLKVDF----GDITALEKIFKES---GDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLC 158 (374)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~d~~~le~~l~~~---~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~ 158 (374)
.+ .+.+. .+..++. -|+++|+++|++. +..+.+++++.+.+++|.+.+ +++|.++|
T Consensus 198 ~~-~~~g~------------~~~~v~~d~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~t~~G~~~~----l~~I~~la 260 (475)
T 3k40_A 198 AG-LLGGV------------KLRSVQSENHRMRGAALEKAIEQDVAEGLIPFYAVVTLGTTNSCAFDY----LDECGPVG 260 (475)
T ss_dssp HH-HHHTC------------EEEEECCBTTBCCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCC----HHHHHHHH
T ss_pred HH-HHcCC------------ceEEEECCCCCcCHHHHHHHHHHHHHCCCccEEEEEEecCCCCcCcCC----HHHHHHHH
Confidence 32 23221 1222222 2899999999853 223677777777888899988 99999999
Q ss_pred HhcCCEEEEeccccCCcccccCcccccCCC-CCcEEEec--ccccCCccchhhheeCHH-HH-hhcCCC--CC-----C-
Q 017259 159 SKYNILMIADEIQSGLARSGRMLASDWEEV-RPDMVILG--KALGGGVIPVSAVLADKE-VM-LCIQPG--EH-----G- 225 (374)
Q Consensus 159 ~~~~i~li~Dea~~~~~~~g~~~~~~~~~~-~~d~~s~s--K~~~~G~~~~G~~~~~~~-~~-~~~~~~--~~-----~- 225 (374)
++||+++++|++|++.......+.....++ ..|.++++ |++++.. .+|+++.++. .. +.+... .. +
T Consensus 261 ~~~~~~lhvD~A~~~~~~~~~~~~~~~~gi~~~Ds~~~~~hK~l~~p~-g~g~l~~~~~~~l~~~~~~~~~yl~~~~~~~ 339 (475)
T 3k40_A 261 NKHNLWIHVDAAYAGSAFICPEYRHLMKGIESADSFNFNPHKWMLVNF-DCSAMWLKDPSWVVNAFNVDPLYLKHDMQGS 339 (475)
T ss_dssp HHTTCEEEEECTTGGGGGGSGGGGGGGTTGGGCSEEEECHHHHSSCCS-SCEEEEESSGGGC------------------
T ss_pred HHhCCeEEEeHHhHHHHHhCHhhHHHhcCcccCCEEEECchhccCCCC-ceEEEEEeCHHHHHHHhcCCccccCCCcCCC
Confidence 999999999999985322221111111222 35777665 9888776 7777766543 32 222110 00 0
Q ss_pred ------CCCCCC-HHHHHHHHHHHHHHhh---hcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCC
Q 017259 226 ------STFGGN-PLASAVAIASLDVIRD---EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTAL 295 (374)
Q Consensus 226 ------~~~~~~-~~~~~aa~~al~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 295 (374)
.+...+ .+......++++.+.. +++.++..++.+++.+.|++. |++....++...++.|.++..
T Consensus 340 ~~~~~~~~~~~sr~~~~l~l~~al~~~g~~g~~~~~~~~~~~a~~l~~~L~~~----~g~~l~~~~~~~iv~f~~~~~-- 413 (475)
T 3k40_A 340 APDYRHWQIPLGRRFRALKLWFVLRLYGVENLQAHIRRHCNFAKQFGDLCVAD----SRFELAAEINMGLVCFRLKGS-- 413 (475)
T ss_dssp ---------CCCGGGTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS----TTEEESSCCBTTEEEEEESSC--
T ss_pred CCCcccccccCCCcccHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcC----CCEEEecCCceEEEEEEeCCc--
Confidence 000011 1223334444554433 355666777777777777664 222222223456667766432
Q ss_pred chhHHHHHHHHHHCCeEe-cc---CCCCEEEEecCC-CCCHHHHHHHHHHHHHHHhccC
Q 017259 296 PVSAYDICLKMKERGILA-KP---THDTIVRLTPPL-SISSNELQEGSKALHDVLELDL 349 (374)
Q Consensus 296 ~~~~~~~~~~l~~~Gi~v-~~---~~~~~lRi~~~~-~~~~e~i~~~~~~l~~~~~~~~ 349 (374)
.....++.++|.++|.++ .+ .+..++|+++.. ..+++|+++++++|+++.+ ++
T Consensus 414 ~~~~~~l~~~L~~~g~~~~~~~~~~g~~~lR~~~~~~~tt~~di~~~~~~i~~~~~-~~ 471 (475)
T 3k40_A 414 NERNEALLKRINGRGHIHLVPAKIKDVYFLRMAICSRFTQSEDMEYSWKEVSAAAD-EM 471 (475)
T ss_dssp HHHHHHHHHHHHHHTSCBCEEEEETTEEEEEEECCCTTCCHHHHHHHHHHHHHHHH-HH
T ss_pred hHHHHHHHHHHHhCCcEEEEeeEECCEEEEEEEeCCCCCCHHHHHHHHHHHHHHHH-HH
Confidence 114678999999988643 33 245789999653 4589999999999999987 54
No 222
>3ht4_A Aluminum resistance protein; lyase, putative cystathionine BEAT-lyase, aluminium resistance protein, Q81A77_baccr, NESG, BCR213; 2.90A {Bacillus cereus atcc 14579}
Probab=99.82 E-value=2.6e-19 Score=169.31 Aligned_cols=265 Identities=11% Similarity=0.086 Sum_probs=171.0
Q ss_pred CCCCcHHHHHHHHhcccCCCeEEe---cCChHHHHHHHHHHHHHcccccccCCCCccEEEEec-cCCCCcccccccccCC
Q 017259 18 FYNDKFPVFAERLTSMFGYDMVLP---MNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCC-GCFHGRTLAAISMSCD 93 (374)
Q Consensus 18 ~~~~~~~~l~~~l~~~~~~~~~~~---~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~-~~yhg~~~~~~~~~~~ 93 (374)
|+.+.++++++++++++|.+..+. ++||++|+..++..+ .++| |+|++.+ +.|.+ ......+++.
T Consensus 62 y~~~~~~~l~~~la~~~g~~~~~~~i~~~sGt~Ai~~al~al-----~~~G-----d~Vl~~~~~~y~~-~~~~~~l~g~ 130 (431)
T 3ht4_A 62 YDDIGRDTLEKVYADVFGAEAGLVRPQIISGTHAISTALFGI-----LRPG-----DELLYITGKPYDT-LEEIVGVRGK 130 (431)
T ss_dssp CSCHHHHHHHHHHHHHTTCSEECCBTTSCSHHHHHHHHHHTT-----CCTT-----CEEEECSSSCCTT-HHHHTTSSSC
T ss_pred CChhhHHHHHHHHHHHhCCCcccccceeeCHHHHHHHHHHHh-----CCCC-----CEEEEeCCCCchh-HHHHHhhccc
Confidence 445667889999999999887655 669999999999876 5677 9999998 77644 3322222211
Q ss_pred ccccccCCCCCCCceeccC-----CCHHHHHHHHHhcCCcEEEEEEcc-ccCCCCcccCChhHHHHHHHHHHh--cCCEE
Q 017259 94 NEAIRGFGPLLPGHLKVDF-----GDITALEKIFKESGDQIAGFLFEP-IQGEAGVIIPPDGYLKAVRDLCSK--YNILM 165 (374)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~-----~d~~~le~~l~~~~~~~~~vi~~~-~~~~~g~~~~~~~~l~~l~~l~~~--~~i~l 165 (374)
++..+......+..++. .|+++++++++ ++++++++++ ++|++|... +...+++|.++|++ +|+++
T Consensus 131 --~~~~~~~~G~~~~~v~~~~~~~~d~e~l~~~l~---~~tk~V~i~~sp~np~~~~~-~~~~l~~i~~la~~~~~~~~l 204 (431)
T 3ht4_A 131 --GVGSFKEYNIGYNAVPLTEGGLVDFEAVAAAIH---SNTKMIGIQRSKGYATRPSF-TISQIKEMIAFVKEIKPDVVV 204 (431)
T ss_dssp --SSSCSGGGTCEEEECCBCTTSSBCHHHHHHHCC---TTEEEEEEECSCTTSSSCCC-CHHHHHHHHHHHHHHCTTCEE
T ss_pred --ccchHHHcCCEEEEeCCCCCCCcCHHHHHhhcC---CCCeEEEEECCCCCCCCCcC-CHHHHHHHHHHHHhhCCCCEE
Confidence 11111111122333443 28999999887 5799999996 555555444 78889999999999 99999
Q ss_pred EEeccccCCcccccCcccccCCCCCcEEEecccccCC--ccchhhheeCHHHHhhcCCC----CCCCCCCCCHHHHHHHH
Q 017259 166 IADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGG--VIPVSAVLADKEVMLCIQPG----EHGSTFGGNPLASAVAI 239 (374)
Q Consensus 166 i~Dea~~~~~~~g~~~~~~~~~~~~d~~s~sK~~~~G--~~~~G~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~aa~ 239 (374)
|+||+|+++.....+.. .+.+..+.|+||+++|| . ++|++++++++.+.++.. ..+.+.+++...+.++.
T Consensus 205 ivDea~~~~~~~~~~~~---~g~Di~~~S~sK~lgg~~~~-~GG~v~~~~~li~~l~~~~~~~~~g~~~~~~~~~~~~~~ 280 (431)
T 3ht4_A 205 FVDNCYGEFIEEQEPCH---VGADLMAGSLIKNPGGGIVK-TGGYIVGKEQYVEACAYRLTSPGIGAEAGASLYSLQEMY 280 (431)
T ss_dssp EEECTTCTTSSSCCGGG---TTCSEEEEETTSGGGTTTCS-SCEEEEECHHHHHHHHHHHSCTTTTTSCSCCCSCSHHHH
T ss_pred EEeCCChhhccCCCccc---cCCeEEEcCccccCCCCCCC-ceEEEEecHHHHHHHHHHhccCCcccccCccHHHHHHHH
Confidence 99999997643333221 23333344889999974 4 568899999888777531 12222222222233344
Q ss_pred HHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHhC-CCceeeEEEEeeeEEEEeccCCCchhHHHHHHHHHHCC
Q 017259 240 ASLDVIRDEKLAERSAHLGEELRQHLFKIQQQF-PNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERG 310 (374)
Q Consensus 240 ~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~G 310 (374)
..++.+ ....++..++.+++.+.|++..... | . ...+..+.++.+.+++.. ...++++.|.+..
T Consensus 281 ~~l~~~--~~~~~~~~~~a~~l~~~L~~~g~~v~p-~-~~~~~~~li~~i~l~~~~---~~~~~~~~l~~~~ 345 (431)
T 3ht4_A 281 QGFFLA--PHVAGQALKGAIFTAAFLEKLGMNTSP-A-WNAPRTDLIQSVQFDDKD---RMIAFCQAIQYAS 345 (431)
T ss_dssp HHHHHH--HHHHHHHHHHHHHHHHHHHHHTCCEES-C-TTSCCSSSCCEEECCCHH---HHHHHHHHHHHTS
T ss_pred hHhhhH--HHHHHHHHHHHHHHHHHHHhCcCEecC-C-CCCCCccEEEEEEeCCHH---HHHHHHHHHHhcC
Confidence 555543 3456778888888989888775321 1 1 111233447777775432 5778999998873
No 223
>2a7v_A Serine hydroxymethyltransferase; structural genomics, structural genomics consortium, SGC; 2.04A {Homo sapiens} PDB: 3ou5_A
Probab=99.82 E-value=5.2e-19 Score=169.07 Aligned_cols=284 Identities=13% Similarity=0.072 Sum_probs=171.4
Q ss_pred HHHhcccCCCe-----EEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCccccc-------ccccCCcc
Q 017259 28 ERLTSMFGYDM-----VLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAA-------ISMSCDNE 95 (374)
Q Consensus 28 ~~l~~~~~~~~-----~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~-------~~~~~~~~ 95 (374)
+++++++|.+. .++++||++|+..++..+ .++| |+|++.++.|.|+.... ..+.+..
T Consensus 107 ~~~a~l~g~~~~~~~~~v~~~sGt~An~~al~al-----~~pG-----D~Vl~~~~~h~g~l~h~~~~~~~~i~~~g~~- 175 (490)
T 2a7v_A 107 RRALEAFDLDPAQWGVNVQPYSGSPANLAVYTAL-----LQPH-----DRIMGLDLPDGGHLTHGYMSDVKRISATSIF- 175 (490)
T ss_dssp HHHHHHTTCCTTTEEEECCCSSHHHHHHHHHHHH-----CCSC-----EECCC---------------------------
T ss_pred HHHHHHcCCCcccCceEEeCCchHHHHHHHHHHH-----cCCC-----CEecccCccccccccchhhhcchhHHHcCCe-
Confidence 88999998875 466779999999999988 6778 99999998875432211 1111110
Q ss_pred ccccCCCCCCCceec-cCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEecccc-C
Q 017259 96 AIRGFGPLLPGHLKV-DFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQS-G 173 (374)
Q Consensus 96 ~~~~~~~~~~~~~~~-~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~-~ 173 (374)
+.+...++..- -..|+++++++++.+ +++++++....+ +...+ +++|.++|++||++|++|++|. |
T Consensus 176 ----~~~~~~~vd~~~~~iD~d~le~~l~~~--~~klIi~~~s~~--~~~~d----l~~i~~ia~~~g~~livD~Ah~~g 243 (490)
T 2a7v_A 176 ----FESMPYKLNPKTGLIDYNQLALTARLF--RPRLIIAGTSAY--ARLID----YARMREVCDEVKAHLLADMAHISG 243 (490)
T ss_dssp ---------CCBCTTTCSBCHHHHHHHHHHH--CCSEEEECCSSC--CSCCC----HHHHHHHHHHTTCEEEEECGGGHH
T ss_pred ----EEEEecccccccCCcCHHHHHHHHhhc--CCcEEEEcCCCC--CCccc----HHHHHHHHHHcCCEEEEccccccc
Confidence 00111111100 012899999999754 456777654433 34555 9999999999999999999986 4
Q ss_pred CcccccC-cccccCCCCCcEE--EecccccCCccchhhheeCHH---------------HHhhcCCCC-CCCCCCCCHHH
Q 017259 174 LARSGRM-LASDWEEVRPDMV--ILGKALGGGVIPVSAVLADKE---------------VMLCIQPGE-HGSTFGGNPLA 234 (374)
Q Consensus 174 ~~~~g~~-~~~~~~~~~~d~~--s~sK~~~~G~~~~G~~~~~~~---------------~~~~~~~~~-~~~~~~~~~~~ 234 (374)
+...|.. ..+. ..|++ |++|+++| . ++|+++++++ +.+.++... .+...+++...
T Consensus 244 lv~~g~~~~~~~----~aDiv~~S~hK~l~G-p-~GG~i~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~g~qggp~~~~ 317 (490)
T 2a7v_A 244 LVAAKVIPSPFK----HADIVTTTTHKTLRG-A-RSGLIFYRKGVKAVDPKTGREIPYTFEDRINFAVFPSLQGGPHNHA 317 (490)
T ss_dssp HHHTTSSCCGGG----TCSEEEEESSGGGCS-C-SCEEEEEECSEEEEETTTEEEEECCCHHHHHHHHTTTTCCSCCHHH
T ss_pred cccCCcCCCCCC----CCCEEEECCcccCcc-c-cchheeeccchhcccccccchhhHHHHHHHHHHhcccCCCCchHHH
Confidence 3222221 1111 24655 66799864 4 6688887754 223333211 11222334455
Q ss_pred HHHHHHHHHHHhh---hcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCchhHHHHHHHHHHCCe
Q 017259 235 SAVAIASLDVIRD---EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGI 311 (374)
Q Consensus 235 ~~aa~~al~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gi 311 (374)
+++..++++.+.. +++.+++.++.+++.+.|++.+.. ++.. ....+++++++... +.+..++.+.|.+.||
T Consensus 318 iaAla~Al~~~~~~~~~~~~~~~~~na~~L~~~L~~~G~~---v~~~-~t~t~lv~vdl~~~--g~~~~~~~~~L~~~GI 391 (490)
T 2a7v_A 318 IAAVAVALKQACTPMFREYSLQVLKNARAMADALLERGYS---LVSG-GTDNHLVLVDLRPK--GLDGARAERVLELVSI 391 (490)
T ss_dssp HHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHTTCE---EGGG-SCSSSEEEEECTTT--TCCHHHHHHHHHHTTE
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHcCcE---EecC-CCCCeEEEEEeCCC--CCCHHHHHHHHHhCCe
Confidence 5555556665533 356778888899999988875311 1111 11246777777532 1257788899999999
Q ss_pred Eecc----C-----CCCEEEEecC----CCCCHHHHHHHHHHHHHHHh
Q 017259 312 LAKP----T-----HDTIVRLTPP----LSISSNELQEGSKALHDVLE 346 (374)
Q Consensus 312 ~v~~----~-----~~~~lRi~~~----~~~~~e~i~~~~~~l~~~~~ 346 (374)
.+.. + .+..|||..+ ...+++|++++++.|.++++
T Consensus 392 ~v~~~~~p~d~~p~~~~~iRig~~a~t~~g~~~~d~~~~~~~i~~~l~ 439 (490)
T 2a7v_A 392 TANKNTCPGDRSAITPGGLRLGAPALTSRQFREDDFRRVVDFIDEGVN 439 (490)
T ss_dssp ECEEECCTTCCCSSSCSEEEEESHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred EEecCccCCCCCCCCCCceEecccccccCCCCHHHHHHHHHHHHHHHH
Confidence 9963 2 3578999653 35789999999999988886
No 224
>1c4k_A Protein (ornithine decarboxylase); lyase; HET: PLP GTP; 2.70A {Lactobacillus SP} SCOP: c.23.1.4 c.67.1.5 d.125.1.1 PDB: 1ord_A*
Probab=99.81 E-value=7.5e-19 Score=175.23 Aligned_cols=308 Identities=10% Similarity=-0.026 Sum_probs=187.1
Q ss_pred CCCcHHHHHHHHhcccCCCeEEecCC-hHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccC-Cccc
Q 017259 19 YNDKFPVFAERLTSMFGYDMVLPMNT-GAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSC-DNEA 96 (374)
Q Consensus 19 ~~~~~~~l~~~l~~~~~~~~~~~~~~-gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~-~~~~ 96 (374)
+.....++++.+++++|.+..++..+ +++++..++.++ .++| |+|++..++|.+.......+.+ .+.+
T Consensus 171 ~~~~i~e~e~~lA~~~gae~~i~v~nGtt~an~~ai~al-----~~pG-----D~VLv~~~~H~S~~~~~~~l~Ga~~v~ 240 (730)
T 1c4k_A 171 HEGPAVAAEKHAARVYNADKTYFVLGGSSNANNTVTSAL-----VSNG-----DLVLFDRNNHKSVYNSALAMAGGRPVY 240 (730)
T ss_dssp TBTHHHHHHHHHHHHTTCSEEEEESSHHHHHHHHHHHHH-----CCTT-----CEEEEETTCCHHHHHHHTTTTCCEEEE
T ss_pred ChHHHHHHHHHHHHHHCCCcEEEECCHHHHHHHHHHHHh-----cCCC-----CEEEEcCCchHHHHHHHHHHCCCEEEE
Confidence 34567899999999999987655544 558999998887 6678 9999999997655444122222 1111
Q ss_pred cccCCCCCCCceeccCCCHHHH-----HHHHHhcCCc---E----EEEEEccccCCCCcccCChhHHHHHHHHHHhcCCE
Q 017259 97 IRGFGPLLPGHLKVDFGDITAL-----EKIFKESGDQ---I----AGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNIL 164 (374)
Q Consensus 97 ~~~~~~~~~~~~~~~~~d~~~l-----e~~l~~~~~~---~----~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~ 164 (374)
.... ....+... . -|+++| +++++++.++ + ++++++++ +++|.+.+ +++|.++|++||++
T Consensus 241 v~~~-~~~~~i~g-~-id~e~L~~~~le~~i~~~~~~~~~t~~~vklviv~~p-n~~G~v~d----l~~I~~la~~~g~~ 312 (730)
T 1c4k_A 241 LQTN-RNPYGFIG-G-IYDSDFDEKKIRELAAKVDPERAKWKRPFRLAVIQLG-TYDGTIYN----AHEVVKRIGHLCDY 312 (730)
T ss_dssp ECEE-ECTTCCEE-E-ECGGGSCHHHHHHHTTTSSHHHHTCSCCBSEEEEESB-CTTSEEEC----HHHHHHHHGGGBSE
T ss_pred EeCC-ccccCccC-C-CCHHHHhhhHHHHHhhcCCcccccccCCCeEEEEECC-CCCCeecC----HHHHHHHHHHcCCe
Confidence 1100 00000000 0 155666 8888753111 2 66666654 46898888 99999999999999
Q ss_pred EEEeccccCC-cccc--c-Ccccc--cCCCC-Cc-EE--EecccccCCccchhhheeCHHHHh---------hcCCC-CC
Q 017259 165 MIADEIQSGL-ARSG--R-MLASD--WEEVR-PD-MV--ILGKALGGGVIPVSAVLADKEVML---------CIQPG-EH 224 (374)
Q Consensus 165 li~Dea~~~~-~~~g--~-~~~~~--~~~~~-~d-~~--s~sK~~~~G~~~~G~~~~~~~~~~---------~~~~~-~~ 224 (374)
||+||+|++. ...+ . ..... .++.+ ++ ++ |++|+++|.. ..|+++.+++... .+... ..
T Consensus 313 livDeAh~~~~~f~~~~~g~~~l~~~~~g~D~~~~iv~~S~hK~L~g~~-~gg~I~v~~~~l~g~~~~i~~~~~~~~~~~ 391 (730)
T 1c4k_A 313 IEFDSAWVGYEQFIPMMRNSSPLLIDDLGPEDPGIIVVQSVHKQQAGFS-QTSQIHKKDSHIKGQLRYCDHKHFNNSFNL 391 (730)
T ss_dssp EEEECTTCCGGGSSGGGGGGCTTSCCCCCTTSCEEEEEECHHHHSSCCT-TCEEEEEECGGGTTSTTCCCHHHHHHHHHH
T ss_pred EEEEcccccccccCcccCCcCcccccccCCCCCCEEEEECCCCCCCCCC-CEEEEEecchhhcCcccccCHHHHHHHHHH
Confidence 9999999742 2111 1 01111 12322 11 44 6679876422 2334544333210 11100 01
Q ss_pred CCCCCCCHHHHHHHHHHHHHHhh---hcHHHHHHHHHHHHHHHHHHHHHhCCCcee---eE-------------------
Q 017259 225 GSTFGGNPLASAVAIASLDVIRD---EKLAERSAHLGEELRQHLFKIQQQFPNYVK---EV------------------- 279 (374)
Q Consensus 225 ~~~~~~~~~~~~aa~~al~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~---~~------------------- 279 (374)
..+.+++...+++..++++.+.. .++.++..++.+++++.|++. ++++.. ..
T Consensus 392 ~~stsp~~~~iaal~aA~~~l~~~~g~~~~~~~~~~a~~lr~~L~~~---i~g~~v~~p~~~~~~~~~~~~~~~~~~~~~ 468 (730)
T 1c4k_A 392 FMSTSPFYPMYAALDVNAAMQEGEAGRKLWHDLLITTIEARKKLIKA---GSMFRPFVPPVVNGKKWEDGDTEDMANNID 468 (730)
T ss_dssp HSCSSCCHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHT---TCSSEESSCSEETTEEGGGSCHHHHTTCGG
T ss_pred hCCCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhh---CCCeEEccccccccccccccccccccccch
Confidence 22345567777777777776654 356778888888888888761 111110 00
Q ss_pred -------------E--EEe------eeEEEEecc--------CCCchhHHHHHHHHHHCCeEeccCCCCEEEEecCCCCC
Q 017259 280 -------------R--GRG------LFNAVEFDK--------TALPVSAYDICLKMKERGILAKPTHDTIVRLTPPLSIS 330 (374)
Q Consensus 280 -------------~--~~g------~~~~~~~~~--------~~~~~~~~~~~~~l~~~Gi~v~~~~~~~lRi~~~~~~~ 330 (374)
. ..+ ..+.+..+. ...+.++.++.++|.++||.+...+...+|++++...|
T Consensus 469 ~~~~~~~~~~~g~~~~~~~~~~idp~kv~i~~pg~~~~~g~~~~~g~~~~~l~~~L~e~GI~v~~~~~~~ir~~~s~g~t 548 (730)
T 1c4k_A 469 YWRFEKGAKWHAYEGYGDNQYYVDPNKFMLTTPGINPETGDYEDFGVPATIVANYLRDHGIIPEKSDLNSILFLMTPAET 548 (730)
T ss_dssp GGBCCTTCTTTCCTTCCTTCEEECTTEEEEECSSEETTTTEECSSCCCHHHHHHHHHHTTCCCSEECSSEEEEECCTTCC
T ss_pred hhccCccchhccccccCCcccccCCeEEEEEeCCcccccccccccCCCHHHHHHHHHHCCcEEEECCCCeEEEEeCCCCC
Confidence 0 001 113343431 11133688999999999999988878999999999999
Q ss_pred HHHHHHHHHHHHHHHhccC
Q 017259 331 SNELQEGSKALHDVLELDL 349 (374)
Q Consensus 331 ~e~i~~~~~~l~~~~~~~~ 349 (374)
++++++++++|.++.+ .+
T Consensus 549 ~e~i~~Ll~aL~~i~~-~~ 566 (730)
T 1c4k_A 549 PAKMNNLITQLLQLQR-LI 566 (730)
T ss_dssp HHHHHHHHHHHHHHHH-HH
T ss_pred HHHHHHHHHHHHHHHH-hc
Confidence 9999999999999887 54
No 225
>2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A {Escherichia coli}
Probab=99.80 E-value=2.2e-18 Score=173.26 Aligned_cols=306 Identities=13% Similarity=0.049 Sum_probs=193.2
Q ss_pred CCcHHHHHHHHhcccCCCeE-EecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccCCccccc
Q 017259 20 NDKFPVFAERLTSMFGYDMV-LPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIR 98 (374)
Q Consensus 20 ~~~~~~l~~~l~~~~~~~~~-~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~ 98 (374)
.....++++.+++++|.+.. ++++|+++|+..++.++ .++| |+|++.+++|++........+..+.+..
T Consensus 204 ~g~v~~~ee~la~l~G~d~~i~~~~Gtt~a~~~~i~al-----~~~G-----D~Vlv~~~~h~s~~~~~~~~G~~~v~v~ 273 (755)
T 2vyc_A 204 TGAFGESEKYAARVFGADRSWSVVVGTSGSNRTIMQAC-----MTDN-----DVVVVDRNCHKSIEQGLMLTGAKPVYMV 273 (755)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHH-----CCTT-----CEEEEESSCCHHHHHHHHHHCCEEEEEC
T ss_pred ccHHHHHHHHHHHHhCCCceEEECCcHHHHHHHHHHHh-----cCCC-----CEEEECCCchHHHHHHHHHcCCEEEEEe
Confidence 34467788999999988865 45555568899999888 6678 9999999997665444333222222211
Q ss_pred cCCCCCCC-ce-eccCC----CHHHHHHHHHhcCC-------cEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEE
Q 017259 99 GFGPLLPG-HL-KVDFG----DITALEKIFKESGD-------QIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILM 165 (374)
Q Consensus 99 ~~~~~~~~-~~-~~~~~----d~~~le~~l~~~~~-------~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~l 165 (374)
...+ .. ....+ |+++++++++++++ ++++++++++ +++|.+.+ +++|.++|++||++|
T Consensus 274 ----~~~~~~g~~g~i~~~~~d~e~le~~i~~~~~~k~~~~~~~klvil~~p-n~~G~v~d----l~~I~~ia~~~~~~l 344 (755)
T 2vyc_A 274 ----PSRNRYGIIGPIYPQEMQPETLQKKISESPLTKDKAGQKPSYCVVTNC-TYDGVCYN----AKEAQDLLEKTSDRL 344 (755)
T ss_dssp ----CCBCTTSCBCCCCGGGGSHHHHHHHHHHCTTTGGGTTCCCSCEEEESS-CTTSEEEC----HHHHHHHHTTTCSEE
T ss_pred ----CCCCccccccccCcCCCCHHHHHHHHHhCccccccccCCCeEEEEECC-CCCceecC----HHHHHHHHHHcCCEE
Confidence 0000 00 00011 79999999986422 2235666554 57898888 999999999999999
Q ss_pred EEeccccCCcccccCc-cccc-CC--CC---Cc---EEEecccccCCccchhhheeCHH--HH--hhcCCC-CCCCCCCC
Q 017259 166 IADEIQSGLARSGRML-ASDW-EE--VR---PD---MVILGKALGGGVIPVSAVLADKE--VM--LCIQPG-EHGSTFGG 230 (374)
Q Consensus 166 i~Dea~~~~~~~g~~~-~~~~-~~--~~---~d---~~s~sK~~~~G~~~~G~~~~~~~--~~--~~~~~~-~~~~~~~~ 230 (374)
++||+|++....+..+ .... .+ .+ +. +.|++|+++|.. ..|+++.+++ .. ..+... ....+.++
T Consensus 345 ivDeA~~~~~~~~~~~~~~~~~~g~~aD~~~~~~iv~~S~hK~L~g~~-~g~~i~~~~~~~~i~~~~~~~~~~~~~s~sp 423 (755)
T 2vyc_A 345 HFDEAWYGYARFNPIYADHYAMRGEPGDHNGPTVFATHSTHKLLNALS-QASYIHVREGRGAINFSRFNQAYMMHATTSP 423 (755)
T ss_dssp EEECTTCTTGGGCGGGTTSSSSCSCCCCCSSBEEEEEEETTTSSSCCT-TCEEEEEECCBTCCCHHHHHHHHHHTSCSSC
T ss_pred EEECcCchhcccCcccCCcchhcCCcCCccCCCeEEEECccccccCcC-CeeeeeecCcccccCHHHHHHHHHHhCCCCH
Confidence 9999998431111110 0011 22 11 11 237779876432 3445555433 11 111110 12234456
Q ss_pred CHHHHHHHHHHHHHHhh---hcHHHHHHHHHHHHHHHHHHHHHh--------CCCcee--eEE-----------------
Q 017259 231 NPLASAVAIASLDVIRD---EKLAERSAHLGEELRQHLFKIQQQ--------FPNYVK--EVR----------------- 280 (374)
Q Consensus 231 ~~~~~~aa~~al~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~--------~~~~~~--~~~----------------- 280 (374)
+.+.+++..++++.+.. +++.++..++.+++++.|+++... + .... ...
T Consensus 424 ~~~~iaal~aA~~~l~~~gg~~~~~~~~~~a~~~r~~L~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 (755)
T 2vyc_A 424 LYAICASNDVAVSMMDGNSGLSLTQEVIDEAVDFRQAMARLYKEFTADGSWFF-KPWNKEVVTDPQTGKTYDFADAPTKL 502 (755)
T ss_dssp CHHHHHHHHHHHHHHSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCC-EESSCSEEECTTTCCEEEGGGSCHHH
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcccccccccccee-eccCchhccccccccccccccccchh
Confidence 77888888888887654 367888999999999999887541 1 0000 000
Q ss_pred -----------------------E-----EeeeEEEEeccC-C------CchhHHHHHHHHHHCCeEeccCCCCEEEEec
Q 017259 281 -----------------------G-----RGLFNAVEFDKT-A------LPVSAYDICLKMKERGILAKPTHDTIVRLTP 325 (374)
Q Consensus 281 -----------------------~-----~g~~~~~~~~~~-~------~~~~~~~~~~~l~~~Gi~v~~~~~~~lRi~~ 325 (374)
. ....+.+.++.. . .+.++.++.++|.++||.+...+.+.+|+.+
T Consensus 503 ~~~~~~~~~~~~~~~~h~~~~~~~~~~~~Dp~~v~i~~~~~~~~G~~~~~g~~~~~l~~~L~~~gI~~e~~~~~~v~~~~ 582 (755)
T 2vyc_A 503 LTTVQDCWVMHPGESWHGFKDIPDNWSMLDPIKVSILAPGMGEDGELEETGVPAALVTAWLGRHGIVPTRTTDFQIMFLF 582 (755)
T ss_dssp HHHCGGGTBCCTTCTTTCCTTCCTTSEEECTTEEEEECSCBCTTSSBCSSCCCHHHHHHHHHTTTCCCSEECSSEEEEEC
T ss_pred ccchhhhhccCcccccccccccCCCccccCCeEEEEEcCCCCCCCCccccCCcHHHHHHHHHHCCCEEeecCCCeEEEEE
Confidence 0 112344444421 0 0235688999999999999877889999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHh
Q 017259 326 PLSISSNELQEGSKALHDVLE 346 (374)
Q Consensus 326 ~~~~~~e~i~~~~~~l~~~~~ 346 (374)
+...|+++++.++++|.++.+
T Consensus 583 ~~g~t~~~~~~l~~al~~~~~ 603 (755)
T 2vyc_A 583 SMGVTRGKWGTLVNTLCSFKR 603 (755)
T ss_dssp CTTCCTTTTHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHH
Confidence 999999999999999998876
No 226
>3jzl_A Putative cystathionine beta-lyase involved in ALU resistance; putative cystathionine beta-lyase involved in aluminum resis structural genomics; HET: LLP; 1.91A {Listeria monocytogenes str} PDB: 3fd0_A*
Probab=99.79 E-value=2.4e-18 Score=161.42 Aligned_cols=261 Identities=10% Similarity=0.097 Sum_probs=166.2
Q ss_pred CCCCcHHHHHHHHhcccCCCeEEe---cCChHHHHHHHHHHHHHcccccccCCCCccEEEEec-cCCCCcccccccccCC
Q 017259 18 FYNDKFPVFAERLTSMFGYDMVLP---MNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCC-GCFHGRTLAAISMSCD 93 (374)
Q Consensus 18 ~~~~~~~~l~~~l~~~~~~~~~~~---~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~-~~yhg~~~~~~~~~~~ 93 (374)
|....+++|++.+++++|.+..++ ++||++|+..++..+ .++| |+|++.+ +.|.+..... ...+.
T Consensus 56 y~~~~~~~Le~~lA~l~g~e~alv~p~~~sGt~Ai~~al~al-----l~~G-----D~Vl~~~~~~y~~~~~~~-~~~g~ 124 (409)
T 3jzl_A 56 YDDEGRDTLERVYATVFKTEAALVRPQIISGTHAISTVLFGI-----LRPD-----DELLYITGQPYDTLEEIV-GIRKQ 124 (409)
T ss_dssp TTCHHHHHHHHHHHHHHTCSEEEEETTSCSHHHHHHHHHHHH-----CCTT-----CEEEECSSSCCTTHHHHH-TSSSS
T ss_pred CChhHHHHHHHHHHHHhCCCcEEEECCCccHHHHHHHHHHHh-----cCCC-----CEEEEeCCCCcHhHHHHH-hcccc
Confidence 445557789999999999998877 899999999999887 5677 9999998 8876654211 00000
Q ss_pred ccccccCCCCCCCceeccC-----CCHHHHHHHHHhcCCcEEEEEEcc----ccCCCCcccCChhHHHHHHHHHHh--cC
Q 017259 94 NEAIRGFGPLLPGHLKVDF-----GDITALEKIFKESGDQIAGFLFEP----IQGEAGVIIPPDGYLKAVRDLCSK--YN 162 (374)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~-----~d~~~le~~l~~~~~~~~~vi~~~----~~~~~g~~~~~~~~l~~l~~l~~~--~~ 162 (374)
....+......+..++. .|+++++++++ ++++++++++ ++|++|.+.+ +++|.++|++ ||
T Consensus 125 --~~~~l~~~G~~~~~v~~~~~g~~d~e~l~~ai~---~~tklV~i~~s~g~p~nptg~v~~----l~~I~~la~~~~~~ 195 (409)
T 3jzl_A 125 --GQGSLKDFHIGYSSVPLLENGDVDFPRIAKKMT---PKTKMIGIQRSRGYADRPSFTIEK----IKEMIVFVKNINPE 195 (409)
T ss_dssp --SSSCTGGGTCEEEECCCCTTSCCCHHHHHHHCC---TTEEEEEEECSCTTSSSCCCCHHH----HHHHHHHHHHHCTT
T ss_pred --hhhHHHHcCCEEEEeCCCCCCCcCHHHHHHhcc---CCCeEEEEECCCCCCCCCcCcccc----HHHHHHHHHhhCCC
Confidence 00000000011222332 38999999887 5799999999 8899997776 9999999999 99
Q ss_pred CEEEEeccccCCcccccCcccccCCCCCcEE--EecccccCCc-cchhhheeCHHHHhhcCCC--C--CCCCCCCCHHHH
Q 017259 163 ILMIADEIQSGLARSGRMLASDWEEVRPDMV--ILGKALGGGV-IPVSAVLADKEVMLCIQPG--E--HGSTFGGNPLAS 235 (374)
Q Consensus 163 i~li~Dea~~~~~~~g~~~~~~~~~~~~d~~--s~sK~~~~G~-~~~G~~~~~~~~~~~~~~~--~--~~~~~~~~~~~~ 235 (374)
+++++|++|+.+.....+. ....|++ |++|.++|+. ..+|++++++++++.+... . .+...++....+
T Consensus 196 ~~livD~a~~~~~~~~~p~-----~~g~Div~~S~sK~lgg~~~~~GG~v~~~~~li~~l~~~~~~~~~g~~~g~~~~~~ 270 (409)
T 3jzl_A 196 VIVFVDNCYGEFVEYQEPP-----EVGADIIAGSLIKNPGGGLAKTGGYIAGKEALVDLCGYRLTTPGIGREAGASLYSL 270 (409)
T ss_dssp CEEEEECTTCTTTSSCCSG-----GGTCSEEEEETTSGGGTTTCSSCEEEEECHHHHHHHHHHHSCTTTGGGCCCCTTCH
T ss_pred CEEEEeCCcccccccCCcc-----ccCCeEEEECccccCCccCCceEEEEEeCHHHHHHHHHHhccccccccccccHHHH
Confidence 9999999998542111221 1234555 7889999642 1467899999988877541 1 111222222112
Q ss_pred HHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHhC-CCceeeEEEEeeeEEEEeccCCCchhHHHHHHHHHHCC
Q 017259 236 AVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQF-PNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERG 310 (374)
Q Consensus 236 ~aa~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~G 310 (374)
.++...++.+ ....++..++..++.+.|++..... |. ...+....++.+.+.+. ....++++.|....
T Consensus 271 ~~~l~gl~~~--~~r~~~~~~~a~~la~~L~~~g~~v~p~--~~~~~~~~i~~i~l~~~---~~~~~~~~~L~~~~ 339 (409)
T 3jzl_A 271 LEMYQGFFLA--PHVTAQAIKGARFTAAMLAEFGVEADPV--WDAPRTDLIQSVSFHNK---EKMVAFAQAIQAAS 339 (409)
T ss_dssp HHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHTTCEEESC--TTSCCSSSCCEEECSCH---HHHHHHHHHHHHTS
T ss_pred HHHHHHHhhH--HHHHHHHHHHHHHHHHHHHhCCCcccCC--CCCCCccEEEEEEeCCH---HHHHHHHHHHHhcC
Confidence 3344444433 2456777778888888887763211 10 00011122667777533 26778999998874
No 227
>3hvy_A Cystathionine beta-lyase family protein, YNBB B.S ortholog; NP_348457.1, putative cystathionine beta-lyase involved in A resistance; HET: LLP MSE; 2.00A {Clostridium acetobutylicum}
Probab=99.78 E-value=7.3e-18 Score=158.65 Aligned_cols=259 Identities=12% Similarity=0.103 Sum_probs=164.4
Q ss_pred CCCCcHHHHHHHHhcccCCCeEEe---cCChHHHHHHHHHHHHHcccccccCCCCccEEEEec-cCCCCcccccccccCC
Q 017259 18 FYNDKFPVFAERLTSMFGYDMVLP---MNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCC-GCFHGRTLAAISMSCD 93 (374)
Q Consensus 18 ~~~~~~~~l~~~l~~~~~~~~~~~---~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~-~~yhg~~~~~~~~~~~ 93 (374)
|.....+++++++++++|.+..++ ++||++|+..++..+ .++| |+|++.+ +.|++..... .....
T Consensus 71 Y~~~g~~~Le~~lA~l~g~e~alv~p~~~sGt~A~~~al~al-----l~pG-----D~Vl~~~~~~y~~~~~~~-g~~~~ 139 (427)
T 3hvy_A 71 YNDIGRDSLDRVYANIFNTESAFVRPHFVNGTHAIGAALFGN-----LRPN-----DTMMSICGMPYDTLHDII-GMDDS 139 (427)
T ss_dssp TTCHHHHHHHHHHHHHHTCSEEEEETTCCSHHHHHHHHHHHT-----CCTT-----CEEEECSSSCCGGGHHHH-TCCTT
T ss_pred CCchhHHHHHHHHHHHhCCCceEEeCCCCcHHHHHHHHHHHh-----cCCC-----CEEEEeCCCCchhHHHHh-ccccc
Confidence 444557789999999999998888 899999999998887 6778 9999998 8886653111 00000
Q ss_pred ccccccCCCCCCCceeccC----CCHHHHHHHHHhcCCcEEEEEEcc----ccCCCCcccCChhHHHHHHHHHHh--cCC
Q 017259 94 NEAIRGFGPLLPGHLKVDF----GDITALEKIFKESGDQIAGFLFEP----IQGEAGVIIPPDGYLKAVRDLCSK--YNI 163 (374)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~----~d~~~le~~l~~~~~~~~~vi~~~----~~~~~g~~~~~~~~l~~l~~l~~~--~~i 163 (374)
+. ...+......+..++. .|+++++++++++ ++++++++++ +.|++|.+.+ +++|.++|++ ||+
T Consensus 140 ~~-~~~l~~~G~~~~~v~~~~~~~d~e~l~~~i~~~-~~tklV~i~~s~gyp~nptg~v~d----l~~i~~ia~~~~~g~ 213 (427)
T 3hvy_A 140 KK-VGSLREYGVKYKMVDLKDGKVDINTVKEELKKD-DSIKLIHIQRSTGYGWRKSLRIAE----IAEIIKSIREVNENV 213 (427)
T ss_dssp CC-SCCTGGGTCEEEECCCBTTBCCHHHHHHHHHHC-TTEEEEEEESSCCSSSSCCCCHHH----HHHHHHHHHHHCSSS
T ss_pred hh-hhHHHHcCCEEEEecCCCCCcCHHHHHHHhhCC-CCCEEEEEECCCCCCCCccccHHH----HHHHHHHHHHhCCCC
Confidence 00 0000000012223333 4899999999853 4799999999 7888887766 9999999999 899
Q ss_pred EEEEeccccCCcccccCcccccCCCCCcEE--EecccccCC-ccchhhheeCHHHHhhcCCC--CCCC--CCCCCHHHHH
Q 017259 164 LMIADEIQSGLARSGRMLASDWEEVRPDMV--ILGKALGGG-VIPVSAVLADKEVMLCIQPG--EHGS--TFGGNPLASA 236 (374)
Q Consensus 164 ~li~Dea~~~~~~~g~~~~~~~~~~~~d~~--s~sK~~~~G-~~~~G~~~~~~~~~~~~~~~--~~~~--~~~~~~~~~~ 236 (374)
++++|++|+.+.....+.. ...|++ |+||.++|+ ..++|++++++++++.++.. ..+. ..+++...+.
T Consensus 214 ~livD~a~~~~~~~~~p~~-----~gaDiv~~S~sK~lgg~g~~~GG~i~~~~~li~~l~~~~~~~~~g~~~~~~~~~a~ 288 (427)
T 3hvy_A 214 IVFVDNCYGEFVEEKEPTD-----VGADIIAGSLIKNIGGGIATTGGYIAGKEEYVTQATFRVTVPGIGGECGSTFGVMR 288 (427)
T ss_dssp EEEEECTTCTTTSSSCGGG-----GTCSEEEEETTSGGGTTTCCSCEEEEECHHHHHHHHHHHSCTTTGGGCCCCTTCHH
T ss_pred EEEEECCccccccCCCCcc-----cCCeEEEECCcccccccccceEEEEEECHHHHHHHHHHhhcCCcccccCCCHHHHH
Confidence 9999999985432222211 223554 888999964 21567888999988887642 1111 1122111133
Q ss_pred HHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEee-----eEEEEeccCCCchhHHHHHHHHHHC
Q 017259 237 VAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGL-----FNAVEFDKTALPVSAYDICLKMKER 309 (374)
Q Consensus 237 aa~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~-----~~~~~~~~~~~~~~~~~~~~~l~~~ 309 (374)
.+...++.+ ....++..++..++.+.|++.... + .++... ++.+.+.+. ....++++.|...
T Consensus 289 ~~~~gl~~~--~~r~~~~~~~a~~la~~L~~~g~~----V--~p~~~~~~~~li~~~~l~~~---~~~~~f~~~l~~~ 355 (427)
T 3hvy_A 289 SLYEGLFMA--PHVTIEAVKGAVFCARIMELAGFD----V--LPKYNDKRTDIIQAIKFNDE---KKLIDFIKGIQTA 355 (427)
T ss_dssp HHHHHHHHH--HHHHHHHHHHHHHHHHHHHHTTCE----E--ESCTTSCCSSSEEEEECSSH---HHHHHHHHHHHHT
T ss_pred HHHHhHhHH--HHHHHHHHHHHHHHHHHHHhCCCe----e--cCCCCCCCceEEEEEeCCCH---HHHHHHHHHhccc
Confidence 344444433 245677777888888887765321 1 111122 666666533 2567788888876
No 228
>3i16_A Aluminum resistance protein; YP_878183.1, carbon-sulfur lyase involved in aluminum resist structural genomics; HET: MSE TLA PLP; 2.00A {Clostridium novyi} PDB: 3gwp_A*
Probab=99.78 E-value=8.7e-18 Score=158.12 Aligned_cols=257 Identities=12% Similarity=0.123 Sum_probs=165.4
Q ss_pred CCCCcHHHHHHHHhcccCCCeEEe---cCChHHHHHHHHHHHHHcccccccCCCCccEEEEec-cCCCCcccccccccCC
Q 017259 18 FYNDKFPVFAERLTSMFGYDMVLP---MNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCC-GCFHGRTLAAISMSCD 93 (374)
Q Consensus 18 ~~~~~~~~l~~~l~~~~~~~~~~~---~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~-~~yhg~~~~~~~~~~~ 93 (374)
|..+.++++++.+++++|.+..++ ++||++|+..++..+ .++| |+|++.+ +.|++..... .....
T Consensus 70 y~~~~~~~Le~~lA~l~g~e~alv~p~~~sGt~Ai~~al~al-----l~pG-----D~Vl~~~~~~y~~~~~~~-g~~~~ 138 (427)
T 3i16_A 70 YGDIGRDSLDAVYARVFNTESALVRPHFVNGTHALGAALFGN-----LRPG-----NTMLSVCGEPYDTLHDVI-GITEN 138 (427)
T ss_dssp TTCHHHHHHHHHHHHHHTCSEEEEETTCCSHHHHHHHHHHHH-----CCTT-----CEEEESSSSCCGGGHHHH-TCSCC
T ss_pred CCHHHHHHHHHHHHHHhCCcceEEeCCCccHHHHHHHHHHHH-----hCCC-----CEEEEeCCCccHHHHHHH-hcccc
Confidence 445557789999999999998877 899999999999887 6677 9999998 8876553211 00000
Q ss_pred ---ccccccCCCCCCCceeccC-----CCHHHHHHHHHhcCCcEEEEEEcc----ccCCCCcccCChhHHHHHHHHHHh-
Q 017259 94 ---NEAIRGFGPLLPGHLKVDF-----GDITALEKIFKESGDQIAGFLFEP----IQGEAGVIIPPDGYLKAVRDLCSK- 160 (374)
Q Consensus 94 ---~~~~~~~~~~~~~~~~~~~-----~d~~~le~~l~~~~~~~~~vi~~~----~~~~~g~~~~~~~~l~~l~~l~~~- 160 (374)
.... .....+..++. .|+++++++++++ ++++++++++ ++|++|.+.+ +++|.++|++
T Consensus 139 ~~~~~l~----~~G~~~~~v~~~~~g~~D~e~l~~~l~~~-~~tklV~i~~s~~~p~nptg~i~d----l~~i~~la~~~ 209 (427)
T 3i16_A 139 SNMGSLK----EFGINYKQVDLKEDGKPNLEEIEKVLKED-ESITLVHIQRSTGYGWRRALLIED----IKSIVDCVKNI 209 (427)
T ss_dssp CSSCCTG----GGTCEEEECCCCTTSSCCHHHHHHHHHTC-TTEEEEEEECSCCSSSSCCCCHHH----HHHHHHHHHHH
T ss_pred chHHHHH----HcCCEEEEecCccCCCcCHHHHHHHhhCC-CCCEEEEEEcCCCCCCCCcccHHH----HHHHHHHHHHh
Confidence 0000 00011222332 3899999999753 4799999999 8888887766 9999999999
Q ss_pred -cCCEEEEeccccCCcccccCcccccCCCCCcEE--EecccccC-CccchhhheeCHHHHhhcCCC--CCCCCCCCCH-H
Q 017259 161 -YNILMIADEIQSGLARSGRMLASDWEEVRPDMV--ILGKALGG-GVIPVSAVLADKEVMLCIQPG--EHGSTFGGNP-L 233 (374)
Q Consensus 161 -~~i~li~Dea~~~~~~~g~~~~~~~~~~~~d~~--s~sK~~~~-G~~~~G~~~~~~~~~~~~~~~--~~~~~~~~~~-~ 233 (374)
||+++++|++|+.+.....+. ....|++ |+||.++| |..++|++++++++++.++.. .........+ +
T Consensus 210 ~~g~~livD~a~~~~~~~~~p~-----~~gaDiv~~S~sK~lgg~g~~~gG~i~~~~~li~~l~~~~~~~~~g~~~~~~~ 284 (427)
T 3i16_A 210 RKDIICFVDNCYGEFMDTKEPT-----DVGADLIAGSLIKNIGGGIAPTGGYLAGTKDCIEKTSYRLTVPGIGGECGSTF 284 (427)
T ss_dssp CTTSEEEEECTTTTTSSSSCGG-----GGTCSEEEEETTSGGGTTTCCSCEEEEECHHHHHHHHHHHSCTTTGGGCCCCT
T ss_pred CCCCEEEEECCCccccccCCcc-----ccCCeEEEecCcccCCCCCCceEEEEEECHHHHHHHHHhcccCccCccCCccH
Confidence 999999999998543222221 1233554 78899986 322568899999988887642 1111111111 2
Q ss_pred H-HHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEee-----eEEEEeccCCCchhHHHHHHHHH
Q 017259 234 A-SAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGL-----FNAVEFDKTALPVSAYDICLKMK 307 (374)
Q Consensus 234 ~-~~aa~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~-----~~~~~~~~~~~~~~~~~~~~~l~ 307 (374)
. ...+...++.+ ....++..++..++.+.|++.... + .++... ++.+.+.+. ....+|++.|.
T Consensus 285 ~~a~~~l~gl~~~--~~r~~~~~~~a~~la~~L~~~g~~----V--~p~~~~~~~~~i~~i~l~~~---~~~~~f~~~l~ 353 (427)
T 3i16_A 285 GVVRSMYQGLFLA--PHISMEALKGAILCSRIMELAGFE----V--MPKYDEKRSDIIQSIKFNDK---DKLIEFCKGIQ 353 (427)
T ss_dssp TCHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHTTCE----E--ESCTTSCCSSSCEEEECSSH---HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhCCCe----e--cCCCCCCCccEEEEEEECCH---HHHHHHHHHHh
Confidence 2 23333344332 245677777888888888765321 1 111222 677777533 25678899888
Q ss_pred HCC
Q 017259 308 ERG 310 (374)
Q Consensus 308 ~~G 310 (374)
...
T Consensus 354 ~~~ 356 (427)
T 3i16_A 354 TGS 356 (427)
T ss_dssp HTC
T ss_pred hcC
Confidence 773
No 229
>1wyu_A Glycine dehydrogenase (decarboxylating) subunit 1; alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_A* 1wyv_A*
Probab=99.77 E-value=1.4e-17 Score=158.51 Aligned_cols=280 Identities=14% Similarity=0.168 Sum_probs=168.7
Q ss_pred CcHHHHHHHHhcccCCCe--EEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCccccccc----ccCCc
Q 017259 21 DKFPVFAERLTSMFGYDM--VLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAIS----MSCDN 94 (374)
Q Consensus 21 ~~~~~l~~~l~~~~~~~~--~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~----~~~~~ 94 (374)
+...++++++++++|.+. +++++|++.+.++++.+++ ..+| |+|++..++|+........ .+...
T Consensus 108 ~~~~~~~~~la~~~g~~~~~i~~~~g~taa~ea~~~a~~----~~~g-----d~Viv~~~~h~s~~~~~~~~a~~~G~~v 178 (438)
T 1wyu_A 108 QATFEYQTMIAELAGLEIANASMYDGATALAEGVLLALR----ETGR-----MGVLVSQGVHPEYRAVLRAYLEAVGAKL 178 (438)
T ss_dssp HHHHHHHHHHHHHHTSSEECSCBSSHHHHHHHHHHHHHH----HHTC-----CEEEEETTSCHHHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHHHHHHhCCCccceEEeCcHHHHHHHHHHHHh----cCCC-----CEEEEcCccCHhHHHHHHHHHHHCCCEE
Confidence 446789999999988773 4789999966666655543 3456 9999999987554433221 11111
Q ss_pred cccccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEecc-ccC
Q 017259 95 EAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEI-QSG 173 (374)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea-~~~ 173 (374)
... +. .+. .+ |+++ ++ +++++++++++ |++|.+.+ +++|.++|++||+++|+|.. ++
T Consensus 179 ~~v----~~-~~~-~~---d~~~----i~---~~t~~v~i~~p-n~tG~~~~----l~~i~~la~~~g~~vivd~d~~a- 236 (438)
T 1wyu_A 179 LTL----PL-EGG-RT---PLPE----VG---EEVGAVVVQNP-NFLGALED----LGPFAEAAHGAGALFVAVADPLS- 236 (438)
T ss_dssp EEE----CC-BTT-BC---CCCC----CC---TTEEEEEEESS-CTTSBCCC----HHHHHHHHHHTTCEEEEECCTTG-
T ss_pred EEE----cC-cCC-cc---CHHH----hC---CCeEEEEEECC-CCCeEEec----HHHHHHHHHHcCCEEEEEechhh-
Confidence 111 10 000 01 2332 33 57999999887 89999988 99999999999999996622 32
Q ss_pred CcccccCcccccCCCCCcEEEec-cccc-----CCccchhhheeCHHHHhhcCCCCC-----------------------
Q 017259 174 LARSGRMLASDWEEVRPDMVILG-KALG-----GGVIPVSAVLADKEVMLCIQPGEH----------------------- 224 (374)
Q Consensus 174 ~~~~g~~~~~~~~~~~~d~~s~s-K~~~-----~G~~~~G~~~~~~~~~~~~~~~~~----------------------- 224 (374)
++.... . . ...+|++++| |.++ +|. ++|++++++++.+.+.....
T Consensus 237 ~g~~~~--~-~--~~g~D~~~~s~kk~~~~~~~~Gp-~~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~l~~~~~~~ 310 (438)
T 1wyu_A 237 LGVLKP--P-G--AYGADIAVGDGQSLGLPMGFGGP-HFGFLATKKAFVRQLPGRLVSETVDVEGRRGFILTLQAREQYI 310 (438)
T ss_dssp GGTBCC--H-H--HHTCSEEEEECTTTTCCCGGGCS-CCEEEEECGGGGGGCCSCCEEEEEBTTSCEEEEECCGGGSHHH
T ss_pred ccCcCC--C-c--cCCCCEEEECCcccCCCccCCCC-CeeEEEEcHHHHHhCCCceeccccccCCCcceeeecccccccc
Confidence 211111 1 1 1245777664 6543 466 78999999888776532110
Q ss_pred ---CCCCCC---CHHHHHHHHHHHHHHhhh---cHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCC
Q 017259 225 ---GSTFGG---NPLASAVAIASLDVIRDE---KLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTAL 295 (374)
Q Consensus 225 ---~~~~~~---~~~~~~aa~~al~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 295 (374)
..+... +.+...++...+..+..+ ++.++.+++.+++.+.|+++ |++..... ...+..+.+....
T Consensus 311 r~~~~t~~~~~~~~~~a~~aa~~l~~~~~~g~~~~~~~~~~~~~~l~~~L~~~----~g~~~~~~-~~~~~~~~~~~~~- 384 (438)
T 1wyu_A 311 RRAKAKSNITTNAQLTALMGAMYLAALGPEGLREVALKSVEMAHKLHALLLEV----PGVRPFTP-KPFFNEFALALPK- 384 (438)
T ss_dssp HGGGSSCCCCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS----TTCEECSC-SSBCSEEEEECSS-
T ss_pred chhcccCCccchHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhcC----CCeEECCC-CCeEEEEEEeCCC-
Confidence 111211 222222222224444332 34555666666666666543 22211111 1223323332222
Q ss_pred chhHHHHHHHHHHCCeEe--ccCC---CCEEEEecCCCCCHHHHHHHHHHHHHHH
Q 017259 296 PVSAYDICLKMKERGILA--KPTH---DTIVRLTPPLSISSNELQEGSKALHDVL 345 (374)
Q Consensus 296 ~~~~~~~~~~l~~~Gi~v--~~~~---~~~lRi~~~~~~~~e~i~~~~~~l~~~~ 345 (374)
+..++.+.|.++||.+ +++. .+++||+++..++++|+++++++|++++
T Consensus 385 --~~~~~~~~L~~~gi~v~~~~~~~~~~~~lRis~~~~~t~edi~~~~~~l~~~l 437 (438)
T 1wyu_A 385 --DPEAVRRALAERGFHGATPVPREYGENLALFAATELHEEEDLLALREALKEVL 437 (438)
T ss_dssp --CHHHHHHHHHHTTCCCCEECCTTSCSSEEEEECCTTCCHHHHHHHHHHHHHHC
T ss_pred --CHHHHHHHHHHCCceeccccccccCCCeEEEEecccCCHHHHHHHHHHHHHHh
Confidence 5789999999999998 4442 6899999988899999999999998764
No 230
>3e77_A Phosphoserine aminotransferase; SERC, PLP, structural genomi structural genomics consortium, SGC, amino-acid biosynthesi aminotransferase; HET: PLP; 2.50A {Homo sapiens}
Probab=99.74 E-value=2.4e-17 Score=152.35 Aligned_cols=287 Identities=9% Similarity=0.003 Sum_probs=180.7
Q ss_pred CcHHHHHHHHhcccCCC---eEEe-cCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccCCccc
Q 017259 21 DKFPVFAERLTSMFGYD---MVLP-MNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEA 96 (374)
Q Consensus 21 ~~~~~l~~~l~~~~~~~---~~~~-~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~ 96 (374)
..+++.++.|+++++.+ +++| ++|||++++.++..+.. .++| |++++...++++... ......-+.
T Consensus 58 ~~~~~ar~~la~ll~~~~~~evif~t~~~T~a~n~a~~~l~~---~~~G-----d~v~~~~~g~~~~~~--~~~a~~~G~ 127 (377)
T 3e77_A 58 KIINNTENLVRELLAVPDNYKVIFLQGGGCGQFSAVPLNLIG---LKAG-----RCADYVVTGAWSAKA--AEEAKKFGT 127 (377)
T ss_dssp HHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHHHHHHGG---GSTT-----CEEEECCCSHHHHHH--HHHHTTTSE
T ss_pred HHHHHHHHHHHHHhCCCCCCeEEEEcCchHHHHHHHHHhccC---CCCC-----CeEEEEECCHHHHHH--HHHHHHhCC
Confidence 34667888888888653 5888 58999999999998842 1236 888776665555321 111111111
Q ss_pred cccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEeccccCCcc
Q 017259 97 IRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLAR 176 (374)
Q Consensus 97 ~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~~~~~ 176 (374)
...+.+...+.. .++++++..++ ++++++.+.+..+.+|.+.| + +|+++|+++++|.+++ ++
T Consensus 128 ~~~~~~~~~~~~----~~~~~~~~~i~---~~t~lV~~~h~et~tG~~~p----i-----i~~~~~~~~~vD~~q~-~g- 189 (377)
T 3e77_A 128 INIVHPKLGSYT----KIPDPSTWNLN---PDASYVYYCANETVHGVEFD----F-----IPDVKGAVLVCDMSSN-FL- 189 (377)
T ss_dssp EEECSCCCSSSC----SCCCGGGCCCC---TTCSCEEEESEETTTTEECS----S-----CCCCTTCCEEEECTTT-TT-
T ss_pred ceEEeccCCCcC----CCCChHHhccC---CCccEEEEeCccCchheEch----h-----hhccCCCEEEEEcccc-cC-
Confidence 111111100000 13344443343 57888888888888899998 5 5789999999999998 31
Q ss_pred cccCcccccCCCCCcEEEec--ccccCCccchhhheeCHHHHhhcCCCC------------CCCCCCCCHHHHHHHHHHH
Q 017259 177 SGRMLASDWEEVRPDMVILG--KALGGGVIPVSAVLADKEVMLCIQPGE------------HGSTFGGNPLASAVAIASL 242 (374)
Q Consensus 177 ~g~~~~~~~~~~~~d~~s~s--K~~~~G~~~~G~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~aa~~al 242 (374)
..++..+.++ ++++| |++| +. ++|+++.++++.+.+.+.. ....++++..+..+..+++
T Consensus 190 -~~~id~~~~~----~~~~s~~K~~g-p~-G~g~l~~~~~~l~~~~~~~p~~~~~~~~~~~~~~~~Tp~v~~i~~l~~al 262 (377)
T 3e77_A 190 -SKPVDVSKFG----VIFAGAQKNVG-SA-GVTVVIVRDDLLGFALRECPSVLEYKVQAGNSSLYNTPPCFSIYVMGLVL 262 (377)
T ss_dssp -SSCCCGGGCS----EEEEEGGGTTS-CT-TCEEEEEETTSCSCCCTTSCGGGCHHHHHTTTTCSSCCCHHHHHHHHHHH
T ss_pred -CCCCchhhcC----EEEEecccccC-CC-ccEEEEEcHHHHhhccCCCCchhhHHHHhhcCCCCCCchHHHHHHHHHHH
Confidence 1233333333 34444 9994 54 6688888877765544210 1122356777888888888
Q ss_pred HHHhhh----cHHHHHHHHHHHHHHHHHHHHHhCCCce-e--eE-EEEeeeEEEEeccCCCchh-HHHHHHHHHHCCeEe
Q 017259 243 DVIRDE----KLAERSAHLGEELRQHLFKIQQQFPNYV-K--EV-RGRGLFNAVEFDKTALPVS-AYDICLKMKERGILA 313 (374)
Q Consensus 243 ~~~~~~----~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~--~~-~~~g~~~~~~~~~~~~~~~-~~~~~~~l~~~Gi~v 313 (374)
+++.+. .+.++.+++.+++++.|+++ |++. . .. ...+..+.|.++......+ ...+.+.|.++||.+
T Consensus 263 ~~l~~~GG~~~i~~~~~~l~~~l~~~L~~~----~g~~~~~~~~~~rs~~ivsf~~~~~~~~~~~~~~~l~~l~~~Gi~~ 338 (377)
T 3e77_A 263 EWIKNNGGAAAMEKLSSIKSQTIYEIIDNS----QGFYVCPVEPQNRSKMNIPFRIGNAKGDDALEKRFLDKALELNMLS 338 (377)
T ss_dssp HHHHHTTHHHHHHHHHHHHHHHHHHHHHTS----TTSEECCSCGGGBCSSEEEEEESSTTCCHHHHHHHHHHHHHTTEES
T ss_pred HHHHHccCHHHHHHHHHHHHHHHHHHHHhc----CCceecCCCHHHcCCcEEEEEcCCCCCchhHHHHHHHHHHHCCcEE
Confidence 887654 45566666777777777654 2221 1 11 1234457777765210001 246888888999999
Q ss_pred ccCC--CCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 017259 314 KPTH--DTIVRLTPPLSISSNELQEGSKALHDVLE 346 (374)
Q Consensus 314 ~~~~--~~~lRi~~~~~~~~e~i~~~~~~l~~~~~ 346 (374)
+++. .+.+|+++...+|++|++++++.|+++.+
T Consensus 339 ~~g~~~~g~iRiS~~~~~t~edId~l~~al~~~~~ 373 (377)
T 3e77_A 339 LKGHRSVGGIRASLYNAVTIEDVQKLAAFMKKFLE 373 (377)
T ss_dssp CBCCTTTCSEEEECCTTSCHHHHHHHHHHHHHHHH
T ss_pred eCCCCcCCEEEEECCCCCCHHHHHHHHHHHHHHHH
Confidence 8764 36799999999999999999999999887
No 231
>3n75_A LDC, lysine decarboxylase, inducible; pyridoxal-5'-phosphate dependent decarboxylase, acid stress stringent response; HET: LLP G4P P6G; 2.00A {Escherichia coli} PDB: 3q16_A*
Probab=99.74 E-value=2.5e-16 Score=155.86 Aligned_cols=307 Identities=10% Similarity=0.028 Sum_probs=197.2
Q ss_pred CCCCcHHHHHHHHhcccCCCeEEecCCh-HHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccCCccc
Q 017259 18 FYNDKFPVFAERLTSMFGYDMVLPMNTG-AEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEA 96 (374)
Q Consensus 18 ~~~~~~~~l~~~l~~~~~~~~~~~~~~g-s~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~ 96 (374)
.+.....++++.+++++|.++.++++|| +.|+..++.++ .++| |+|++.+++|.+...+....+..+.+
T Consensus 192 ~~~g~i~eaE~~lA~~fGa~~a~~v~nGts~An~~ai~al-----~~pG-----D~VLv~r~~H~S~~~~l~lsGa~pv~ 261 (715)
T 3n75_A 192 DHSGPHKEAEQYIARVFNADRSYMVTNGTSTANKIVGMYS-----APAG-----STILIDRNCHKSLTHLMMMSDVTPIY 261 (715)
T ss_dssp TTBTHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHH-----CCTT-----CEEEEESSCCHHHHHHHHHSCCEEEE
T ss_pred CCcHHHHHHHHHHHHHhCCCCceEECcHHHHHHHHHHHHh-----CCCC-----CEEEECCCccHHHHHHHHHcCCEEEE
Confidence 4455688899999999999988777777 58888888887 6788 99999999975555443333333333
Q ss_pred cccCCCCCCCceeccCC------CHHHHHHHHHhcCCc--EEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEe
Q 017259 97 IRGFGPLLPGHLKVDFG------DITALEKIFKESGDQ--IAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIAD 168 (374)
Q Consensus 97 ~~~~~~~~~~~~~~~~~------d~~~le~~l~~~~~~--~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~D 168 (374)
.... ... ..++.+ |+++++++++++++. +++++++++ +++|.+.+ +++|.++|++++ +++|
T Consensus 262 v~~~---~~~-~gi~~~i~~~~~d~e~Le~~l~~~~~~k~p~~vivt~p-n~~G~v~d----l~~I~ela~~~~--livD 330 (715)
T 3n75_A 262 FRPT---RNA-YGILGGIPQSEFQHATIAKRVKETPNATWPVHAVITNS-TYDGLLYN----TDFIKKTLDVKS--IHFD 330 (715)
T ss_dssp ECCC---BCT-TCCBCCCCGGGGSHHHHHHHHHHSTTCCSCSEEEEESS-CTTSEEEC----HHHHHHHCCCSE--EEEE
T ss_pred Eecc---ccc-cccccCcccccCCHHHHHHHHhhCcCccCceEEEEECC-CCCCccCC----HHHHHHHhCcCc--EEEc
Confidence 2210 000 011111 799999999876321 225555555 78899998 999999998774 7999
Q ss_pred ccccCCcccccCcc-ccc--CCCCCcE-----EEecccccCCccchhhheeCHHHH-hhcCCC-CCCCCCCCCHHHHHHH
Q 017259 169 EIQSGLARSGRMLA-SDW--EEVRPDM-----VILGKALGGGVIPVSAVLADKEVM-LCIQPG-EHGSTFGGNPLASAVA 238 (374)
Q Consensus 169 ea~~~~~~~g~~~~-~~~--~~~~~d~-----~s~sK~~~~G~~~~G~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~aa 238 (374)
|+|++....+..+. ... .+..+|+ .|++|+++|-- ..|++..++++. ..+... ....+.+++.+.+++.
T Consensus 331 EAH~~~~~f~~~~~~~~al~~g~~aD~vii~~~S~hKtL~glt-qgs~i~v~~~i~~~~~~~~~~~~~STSpsy~~~Asl 409 (715)
T 3n75_A 331 SAWVPYTNFSPIYEGKCGMSGGRVEGKVIYETQSTHKLLAAFS-QASMIHVKGDVNEETFNEAYMMHTTTSPHYGIVAST 409 (715)
T ss_dssp CTTCTTGGGSGGGTTSSTTSSSCCTTCEEEEEECHHHHSSCCT-TCEEEEEESCCCHHHHHHHHHHTSCSSCCHHHHHHH
T ss_pred cccccccccCCccccccccccCcCCCEEEEEEecccccccCCC-CeeEEEeCchhhHHHHHHHHHhhcCCCchHHHHHHH
Confidence 99984321122111 111 1212453 36779987532 345566554311 111111 1234557788888888
Q ss_pred HHHHHHHhh---hcHHHHHHHHHHHHHHHHHHHHHhCCC-cee-------------e-----------------EEEEee
Q 017259 239 IASLDVIRD---EKLAERSAHLGEELRQHLFKIQQQFPN-YVK-------------E-----------------VRGRGL 284 (374)
Q Consensus 239 ~~al~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~-------------~-----------------~~~~g~ 284 (374)
.++++.+.. .++.++..++.+++++.|+++....++ ++. . ..-...
T Consensus 410 daA~~~~~~~~g~~~~~~l~~~a~~~r~~L~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~gf~~~~~~~~~~Dp~ 489 (715)
T 3n75_A 410 ETAAAMMKGNAGKRLINGSIERAIKFRKEIKRLRTESDGWFFDVWQPDHIDTTECWPLRSDSTWHGFKNIDNEHMYLDPI 489 (715)
T ss_dssp HHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCCCEESSCSCCCSCSCEECCTTCCTTCCTTCCSSSEEECTT
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHhhhhcccceeeccCcccccchhhhccCcccccccccccccCcccCCCe
Confidence 889888753 367899999999999999888642110 000 0 000112
Q ss_pred eEEEEeccCC-------CchhHHHHHHHHHHCCeEeccCCCCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 017259 285 FNAVEFDKTA-------LPVSAYDICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVLE 346 (374)
Q Consensus 285 ~~~~~~~~~~-------~~~~~~~~~~~l~~~Gi~v~~~~~~~lRi~~~~~~~~e~i~~~~~~l~~~~~ 346 (374)
-+.+..+... .|.++.++.++|.++||.+.-.+...+-+.++...++++++.++++|.++-+
T Consensus 490 Kl~i~~~~~~~~G~~~~~Gi~g~~~~~~L~~~~I~~E~~d~~~vl~l~s~g~~~~~~~~L~~aL~~~~~ 558 (715)
T 3n75_A 490 KVTLLTPGMEKDGTMSDFGIPASIVAKYLDEHGIVVEKTGPYNLLFLFSIGIDKTKALSLLRALTDFKR 558 (715)
T ss_dssp EEEEECSCBCTTSCBCSSCCCHHHHHHHHHHTTCCCSEEETTEEEEECCTTCCHHHHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCCCccccCCCcHHHHHHHHHHCCCEEEecCCCcEEEEeCCCCCHHHHHHHHHHHHHHHH
Confidence 2233332210 0346778999999999999988888888888888899999999999987654
No 232
>3qm2_A Phosphoserine aminotransferase; structural genomics, center for structural genomics of infec diseases, csgid; 2.25A {Salmonella enterica subsp} PDB: 1bjn_A* 1bjo_A* 3qbo_A*
Probab=99.73 E-value=6.7e-18 Score=156.94 Aligned_cols=286 Identities=9% Similarity=0.002 Sum_probs=176.9
Q ss_pred CCcHHHHHHHHhcccCCC---eEEe-cCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccCCcc
Q 017259 20 NDKFPVFAERLTSMFGYD---MVLP-MNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNE 95 (374)
Q Consensus 20 ~~~~~~l~~~l~~~~~~~---~~~~-~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~ 95 (374)
...+++.++.++++++.+ +++| |+|||++++.++..+ .++| |++++...+.++.... ..+.....
T Consensus 71 ~~~~~~ar~~la~ll~~~~~~evif~t~~~T~a~n~ai~~l-----~~~g-----d~v~~~~~~~~~~~~~-~~a~~~G~ 139 (386)
T 3qm2_A 71 IQVAEEAEQDFRDLLNIPSNYKVLFCHGGGRGQFAGVPLNL-----LGDK-----TTADYVDAGYWAASAI-KEAKKYCA 139 (386)
T ss_dssp --CCHHHHHHHHHHHTCCTTEEEEEEESCTTHHHHHHHHHH-----CTTC-----CEEEEEESSHHHHHHH-HHHTTTSE
T ss_pred HHHHHHHHHHHHHHhCCCCCceEEEEcCCchHHHHHHHHhc-----cCCC-----CeEEEEeCCHHHHHHH-HHHHHhCC
Confidence 566788999999988653 5888 699999999999887 4556 7776655554443211 11111010
Q ss_pred ccccCCCCC--CCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcc-cCChhHHHHHHHHHHhcCCEEEEecccc
Q 017259 96 AIRGFGPLL--PGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVI-IPPDGYLKAVRDLCSKYNILMIADEIQS 172 (374)
Q Consensus 96 ~~~~~~~~~--~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~-~~~~~~l~~l~~l~~~~~i~li~Dea~~ 172 (374)
. .+.+.. ..... .++++++++++ +++++|++.+..+.+|.+ .| +++|. +|+++++|.+++
T Consensus 140 v--~~v~~~~~~~G~~---~~~~~~~~~l~---~~t~lV~~~h~et~tG~~i~p----i~~i~-----~g~~~~vDa~qs 202 (386)
T 3qm2_A 140 P--QIIDAKITVDGKR---AVKPMREWQLS---DNAAYLHYCPNETIDGIAIDE----TPDFG-----PEVVVTADFSST 202 (386)
T ss_dssp E--EEEECEEEETTEE---EECCGGGCCCC---TTCSCEEECSEETTTTEECCC----CCCCC-----TTCCEEEECTTT
T ss_pred e--EEEecCcccCCCC---CCchHHHhhcC---CCCcEEEEECCcCCcCEecCc----hhhhc-----CCCEEEEEcccc
Confidence 0 000000 00000 03445555554 578888888888888996 76 76664 899999999998
Q ss_pred CCcccccCcccccCCCCCcEEEec--ccccCCccchhhheeCHHHHhhcCCCC-----------CCC-CCCCCHHHHHHH
Q 017259 173 GLARSGRMLASDWEEVRPDMVILG--KALGGGVIPVSAVLADKEVMLCIQPGE-----------HGS-TFGGNPLASAVA 238 (374)
Q Consensus 173 ~~~~~g~~~~~~~~~~~~d~~s~s--K~~~~G~~~~G~~~~~~~~~~~~~~~~-----------~~~-~~~~~~~~~~aa 238 (374)
++ ..++..+.++ ++++| |++| .. ++|+++.++++.+.+.+.. ... ..+++..+..+.
T Consensus 203 -~g--~~pidv~~~~----~~~~s~hK~lG-P~-G~g~l~v~~~~~~~~~~~~p~~~~~~~~~~~~~~~gTp~v~~i~~l 273 (386)
T 3qm2_A 203 -IL--SAPLDVSRYG----VIYAGAQKNIG-PA-GLTLVIVREDLLGKAHESCPSILDYTVLNDNDSMFNTPPTFAWYLS 273 (386)
T ss_dssp -TT--SSCCCGGGCS----EEEEETTTTTC-CT-TEEEEEEEGGGCSCCCTTSCGGGCHHHHHHC-------CCSHHHHH
T ss_pred -cC--CCCCCccccC----EEEEecccccC-CC-ccEEEEECHHHHhhhcccCCcHHHHHHHhhcCCCCCCCcHHHHHHH
Confidence 32 1223333332 44444 9995 55 6788888888765554311 011 124466677777
Q ss_pred HHHHHHHhhh----cHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCchhHHHHHHHHHHCCeEec
Q 017259 239 IASLDVIRDE----KLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAK 314 (374)
Q Consensus 239 ~~al~~~~~~----~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~ 314 (374)
.++++++.+. ++.++.+++.+++++.|+++. .+..........+..+.|.+++.. .+ .++.+.|.++||.++
T Consensus 274 ~~Al~~~~~~gG~~~i~~~~~~l~~~l~~~l~~~~-~~~~~~~~~~rs~~iv~f~~~~~~--~~-~~~~~~L~~~gI~~~ 349 (386)
T 3qm2_A 274 GLVFKWLKAQGGVAAMHKINQQKAELLYGVIDNSD-FYRNDVAQANRSRMNVPFQLADNT--LD-KVFLEESFAAGLHAL 349 (386)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHTCS-SEECCBCGGGBCSSEEEEEESSGG--GH-HHHHHHHHHTTEECC
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHCC-CcccCCCHHHcCceEEEEECCCcc--cc-HHHHHHHHHCCCEEe
Confidence 7788876543 455666667777777776541 100001111123456777776421 13 678888999999998
Q ss_pred cCC--CCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 017259 315 PTH--DTIVRLTPPLSISSNELQEGSKALHDVLE 346 (374)
Q Consensus 315 ~~~--~~~lRi~~~~~~~~e~i~~~~~~l~~~~~ 346 (374)
.+. .+.+|+++...+|++|++++++.|+++.+
T Consensus 350 ~g~~~~~~iRiS~~~~~t~edId~l~~~l~~~~~ 383 (386)
T 3qm2_A 350 KGHRVVGGMRASIYNAMPIEGVKALTDFMIDFER 383 (386)
T ss_dssp BCCTTTCSEEEECCTTSCHHHHHHHHHHHHHHHH
T ss_pred CCCCCcCeEEEEcCCCCCHHHHHHHHHHHHHHHH
Confidence 763 35699999999999999999999999876
No 233
>3hl2_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine, sepsecs, protein-RNA complex, alternative splicing, cytoplasm, protein biosynthesis, pyridoxal phosphate, selenium; HET: PLR SEP; 2.81A {Homo sapiens}
Probab=99.67 E-value=4.9e-15 Score=136.94 Aligned_cols=293 Identities=14% Similarity=0.100 Sum_probs=177.6
Q ss_pred eEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccC-CccccccCCCCCCCceeccCCCHH
Q 017259 38 MVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSC-DNEAIRGFGPLLPGHLKVDFGDIT 116 (374)
Q Consensus 38 ~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~d~~ 116 (374)
..++++++|.++.+++.+... ++ .++.+.||+++.+ |-....+..+.+ .+.+...... .+ ... -|++
T Consensus 136 ~~flVnGsTgg~lamilaa~r-----~~-rpg~d~VIvpRn~-HKSv~kAliL~Gl~Pv~V~p~~d--~~--~~~-id~e 203 (501)
T 3hl2_A 136 NCFVVPMATGMSLTLCFLTLR-----HK-RPKAKYIIWPRID-QKSCFKSMITAGFEPVVIENVLE--GD--ELR-TDLK 203 (501)
T ss_dssp EEEEESSCHHHHHHHHHHHHH-----HH-CTTCCEEEEECCC-CHHHHHHHHHTTCEEEEECEEEE--TT--EEE-ECHH
T ss_pred cEEEECcHHHHHHHHHHHHcC-----cc-cCCCCEEEEecch-HHHHHHHHHHcCCeEEEEeeeec--cc--ccC-CCHH
Confidence 467777777677777666642 21 1122889998888 666666655554 3333321100 00 011 1899
Q ss_pred HHHHHHHhcC-CcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEeccccCCcccccCcccccCCC-CCcEEE
Q 017259 117 ALEKIFKESG-DQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEV-RPDMVI 194 (374)
Q Consensus 117 ~le~~l~~~~-~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~~~~~~g~~~~~~~~~~-~~d~~s 194 (374)
+++++|++++ +.+.++++++..+.++...+ +++|+++|++||+++++||||+........+....+.. ..|+++
T Consensus 204 ~le~aI~e~ga~~i~~V~~Ttt~y~p~~~dd----I~eIaeIch~~gIpllVDeAhGah~~~~~~lp~sA~~~GrAD~vV 279 (501)
T 3hl2_A 204 AVEAKVQELGPDCILCIHSTTSCFAPRVPDR----LEELAVICANYDIPHIVNNAYGVQSSKCMHLIQQGARVGRIDAFV 279 (501)
T ss_dssp HHHHHHHHHCGGGEEEEEEECSCCTTBCCCC----HHHHHHHHHHHTCCEEEECTTCTTCHHHHHHHHHHHHHSCCCEEE
T ss_pred HHHHHHHhcCCCcEEEEEecCCCCCCccccc----HHHHHHHHHHcCCeEEEeCcchhhhhhhhhhHHHHHhcCCCcEEE
Confidence 9999999875 55666666555443444456 99999999999999999999985421111111122222 378887
Q ss_pred ec--ccccCCccchhh-he-e-CHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHhhh---cHHHHHHHHHHHHHHHHH
Q 017259 195 LG--KALGGGVIPVSA-VL-A-DKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRDE---KLAERSAHLGEELRQHLF 266 (374)
Q Consensus 195 ~s--K~~~~G~~~~G~-~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~aa~~al~~~~~~---~~~~~~~~~~~~~~~~l~ 266 (374)
.| |.+- +++|. ++ . ++++++.+.....+. - +....+..+.++..+..+ ++.++..++.+++++.|+
T Consensus 280 qS~HK~ll---vpIGG~ii~~~d~e~l~~~~~~yPGr-~--S~Spsldl~~tLL~lGr~Gy~~ll~e~~ela~~L~~~L~ 353 (501)
T 3hl2_A 280 QSLDKNFM---VPVGGAIIAGFNDSFIQEISKMYPGR-A--SASPSLDVLITLLSLGSNGYKKLLKERKEMFSYLSNQIK 353 (501)
T ss_dssp EEHHHHHC---CCSSCEEEEESCHHHHHHHHHTSCSC-B--CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ecccccce---eecCceEEEeCCHHHHHHHHHhCCCC-C--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77 6543 24433 33 3 556666664322111 1 222233233333333333 667888889999999999
Q ss_pred HHHHhCCCceeeEEEEeeeEEEEeccCCC--chhHHHHHHHHHHCCe---Ee-ccC--------------------CCCE
Q 017259 267 KIQQQFPNYVKEVRGRGLFNAVEFDKTAL--PVSAYDICLKMKERGI---LA-KPT--------------------HDTI 320 (374)
Q Consensus 267 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~--~~~~~~~~~~l~~~Gi---~v-~~~--------------------~~~~ 320 (374)
++...+...+..++.+..-+.+.+..... .....++-..|..++| -+ .++ ...+
T Consensus 354 ~la~~~ge~ll~~~~n~is~a~tl~~~~~~~~~~~t~~gs~Lf~r~vsG~Rvv~~~~~~~i~g~~f~~~g~h~~~~~~~y 433 (501)
T 3hl2_A 354 KLSEAYNERLLHTPHNPISLAMTLKTLDEHRDKAVTQLGSMLFTRQVSGARVVPLGSMQTVSGYTFRGFMSHTNNYPCAY 433 (501)
T ss_dssp HHHHTTTCCBCCCTTCSSEEEEECTTSCTTTSCHHHHHHHHHHHTTCCSCEEECTTCCEEETTEEESSTTTTSSCCSSCE
T ss_pred HHHHhcChhhcCCCCCceeEEEecccccccccccHHHHHHHHHhcCCCcceeecCCCceEECCeeecCcccCCCCCCchH
Confidence 98876543455555555666666643311 1246678888888854 22 221 1367
Q ss_pred EEEecCCCCCHHHHHHHHHHHHHHHhccCCcCC
Q 017259 321 VRLTPPLSISSNELQEGSKALHDVLELDLPKMR 353 (374)
Q Consensus 321 lRi~~~~~~~~e~i~~~~~~l~~~~~~~~~~~~ 353 (374)
+-++.....+.+|++.++++|++++. ++.+..
T Consensus 434 l~~a~aiG~~~~~v~~~~~~l~~~~~-~~~~~~ 465 (501)
T 3hl2_A 434 LNAASAIGMKMQDVDLFIKRLDRCLK-AVRKER 465 (501)
T ss_dssp EEEECCTTCCHHHHHHHHHHHHHHHH-HHHC--
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHH-HHHHhh
Confidence 88888888999999999999999998 664433
No 234
>3m5u_A Phosphoserine aminotransferase; alpha-beta half sandwich, csgid, amino-acid biosynthesis, cytoplasm, pyridoxal phosphate; HET: MES; 2.15A {Campylobacter jejuni} SCOP: c.67.1.0
Probab=99.66 E-value=1.4e-15 Score=140.07 Aligned_cols=275 Identities=10% Similarity=0.010 Sum_probs=172.7
Q ss_pred CcHHHHHHHHhcccCCC---eEEe-cCChHHHHHHHHHHHHHcccccccCCCCccEEE-EeccCCCCcccccccccCCcc
Q 017259 21 DKFPVFAERLTSMFGYD---MVLP-MNTGAEGVETALKLARKWGYVKKKFSIDEAIIV-SCCGCFHGRTLAAISMSCDNE 95 (374)
Q Consensus 21 ~~~~~l~~~l~~~~~~~---~~~~-~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi-~~~~~yhg~~~~~~~~~~~~~ 95 (374)
..+++.++.++++++.+ +++| |+|||++++.++..+ . +| +++. +..+. ++......... . +
T Consensus 50 ~~~~~~r~~la~ll~~~~~~~v~f~t~~~T~a~n~~~~~~-----~-~~-----~~~~~i~~~~-~~~~~~~~a~~-~-G 115 (361)
T 3m5u_A 50 EVHFGAQEKAKKLYELNDDYEVLFLQGGASLQFAMIPMNL-----A-LN-----GVCEYANTGV-WTKKAIKEAQI-L-G 115 (361)
T ss_dssp HHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHHHHHH-----C-CS-----SCEEEEECSH-HHHHHHHHHHH-T-T
T ss_pred HHHHHHHHHHHHHhCCCCCceEEEEcCcHHHHHHHHHHhc-----C-CC-----CeEEEEeCCH-HHHHHHHHHHH-c-C
Confidence 45667888889888762 6888 999999999999877 3 45 5443 33333 33321111100 0 0
Q ss_pred ccccCCCCCCCceeccCC-------CHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEe
Q 017259 96 AIRGFGPLLPGHLKVDFG-------DITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIAD 168 (374)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~-------d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~D 168 (374)
..+..++.+ +++. + |+ ++++++.+.+..+.+|.+.+. +++ +|+++++|
T Consensus 116 ---------~~v~~~~~~~~g~~~~~~~~-~--l~---~~t~lv~~~~~e~~tG~~~~~---------i~~-~~~~~~vD 170 (361)
T 3m5u_A 116 ---------VNVKTVASSEESNFDHIPRV-E--FS---DNADYAYICSNNTIYGTQYQN---------YPK-TKTPLIVD 170 (361)
T ss_dssp ---------CCEEEEEECTTTTSCSCCCC-C--CC---TTSSEEEEESEETTTTEECSS---------CCC-CSSCEEEE
T ss_pred ---------CceEEEecccCcCCCcCChh-h--cC---CCCCEEEEeCCCCCcceeCCc---------ccc-cCCEEEEE
Confidence 111111110 2223 2 44 578888888777788988651 334 49999999
Q ss_pred ccccCCcccccCcccccCCCCCcEEEec--ccccCCccchhhheeCHHHHhhcCC----CC---------CCCCCCCCHH
Q 017259 169 EIQSGLARSGRMLASDWEEVRPDMVILG--KALGGGVIPVSAVLADKEVMLCIQP----GE---------HGSTFGGNPL 233 (374)
Q Consensus 169 ea~~~~~~~g~~~~~~~~~~~~d~~s~s--K~~~~G~~~~G~~~~~~~~~~~~~~----~~---------~~~~~~~~~~ 233 (374)
.+++ ++. .++..+ ..|++++| |++| .. ++|+++.++++.+.+.+ .. ....++++..
T Consensus 171 ~~q~-~g~--~~id~~----~~d~~~~s~~K~~g-p~-G~g~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~Tp~v~ 241 (361)
T 3m5u_A 171 ASSD-FFS--RKVDFS----NIALFYGGVQKNAG-IS-GLSCIFIRKDMLERSKNKQIPSMLNYLTHAENQSLFNTPPTF 241 (361)
T ss_dssp CGGG-TTS--SCCCCT----TEEEEEEETTTTSS-CT-TCEEEEEEHHHHHHHHTCCCCGGGCHHHHHHTTTCSSCCCHH
T ss_pred cccc-cCC--CCCCcc----cCCEEEEechhccC-CC-ccEEEEEcHHHHhhhcCCCCCceeehHHHhhcCCCCCCccHH
Confidence 9998 321 122222 24677776 9995 54 67888888887766543 10 1112356778
Q ss_pred HHHHHHHHHHHHhhh----cHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEecc-CCCchhHHHHHHHHHH
Q 017259 234 ASAVAIASLDVIRDE----KLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDK-TALPVSAYDICLKMKE 308 (374)
Q Consensus 234 ~~~aa~~al~~~~~~----~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~~l~~ 308 (374)
+..+..++++++.+. ++.++.+++.+++++.|+++...+..........+..+.|.+++ .. ...++...|.+
T Consensus 242 ~i~~l~~al~~l~~~gG~~~i~~~~~~l~~~l~~~L~~~~g~~~~~~~~~~rs~~ivsf~~~~~~~---~~~~~~~~L~~ 318 (361)
T 3m5u_A 242 AIYMFNLEMDWLLNQGGLDKVHEKNSQKATMLYECIDLSNGFYKGHADKKDRSLMNVSFNIAKNKD---LEPLFVKEAEE 318 (361)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHTSTTSEEESSCGGGBCSSEEEEEESSCTT---HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHCCCeeeccCCHHHcCCeEEEEECCCchh---hhHHHHHHHHH
Confidence 888888889887654 45566666777777777654311000001111234567777775 21 22578889999
Q ss_pred CCeEeccCC--CCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 017259 309 RGILAKPTH--DTIVRLTPPLSISSNELQEGSKALHDVLE 346 (374)
Q Consensus 309 ~Gi~v~~~~--~~~lRi~~~~~~~~e~i~~~~~~l~~~~~ 346 (374)
+||.++.++ .+.+|+++...+|++|++++++.|+++.+
T Consensus 319 ~gI~~~~g~~~~g~iRiS~~~~~t~edId~l~~al~~~~~ 358 (361)
T 3m5u_A 319 AGMIGLKGHRILGGIRASIYNALNLDQVKTLCEFMKEFQG 358 (361)
T ss_dssp TTEECCBCCTTTCSEEEECCTTSCHHHHHHHHHHHHHHHH
T ss_pred CCCEEecCCCccCeEEEEccCCCCHHHHHHHHHHHHHHHH
Confidence 999998764 26799999999999999999999999887
No 235
>3bc8_A O-phosphoseryl-tRNA(SEC) selenium transferase; disorder-order transition, phosphate-loop, pyridoxal phospha selenocysteine synthase (SECS, sepsecs); HET: LLP; 1.65A {Mus musculus} SCOP: c.67.1.9 PDB: 3bca_A* 3bcb_A*
Probab=99.63 E-value=9.5e-15 Score=136.67 Aligned_cols=303 Identities=13% Similarity=0.068 Sum_probs=171.8
Q ss_pred HHHHHHhcccCCCe---EEecCChHHHHHH-HHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccCC-cccccc
Q 017259 25 VFAERLTSMFGYDM---VLPMNTGAEGVET-ALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCD-NEAIRG 99 (374)
Q Consensus 25 ~l~~~l~~~~~~~~---~~~~~~gs~a~~~-al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~~-~~~~~~ 99 (374)
.+..++.+..|... .++++|+|.+.++ ++.+++.. ..+| +.|++...+ |.....+..+.+- +.+..
T Consensus 102 ~~~~~~~~~lGlp~~~~~~lV~GaT~~~~a~~L~aar~~--~~~~-----~~viv~r~a-HkSv~kAl~l~Gl~p~~v~- 172 (450)
T 3bc8_A 102 SLVLNVIKLAGVHSVASCFVVPMATGMSLTLCFLTLRHK--RPKA-----KYIIWPRID-QKSCFKSMVTAGFEPVVIE- 172 (450)
T ss_dssp HHHHHHHHHHTCTTCCEEEEESSCHHHHHHHHHHHHHHH--CTTC-----CEEEEECCC-CHHHHHHHHHTTCEEEEEC-
T ss_pred HHHHHHHHhCCCCCCceEEEECCHHHHHHHHHHHHcchh--hcCC-----CEEEEECCc-HHHHHHHHHHcCCeeEEEE-
Confidence 45566666556653 4888888745444 44444432 1124 788888775 7777777666553 22221
Q ss_pred CCCCCCCceeccCCCHHHHHHHHHhcC-CcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEeccccCCcccc
Q 017259 100 FGPLLPGHLKVDFGDITALEKIFKESG-DQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSG 178 (374)
Q Consensus 100 ~~~~~~~~~~~~~~d~~~le~~l~~~~-~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~~~~~~g 178 (374)
+...+- ... -|+++|+++|++++ +.+.+|++++.++.+|.+.+ +++|+++|++||+++++|+||+......
T Consensus 173 --~~~~~~-~~~-id~~~le~aI~~~~~~~~~~Vv~t~t~~g~g~~dd----l~~Ia~ia~~~gi~l~VD~A~G~~~~~~ 244 (450)
T 3bc8_A 173 --NVLEGD-ELR-TDLKAVEAKIQELGPEHILCLHSTTACFAPRVPDR----LEELAVICANYDIPHVVNNAYGLQSSKC 244 (450)
T ss_dssp --CEEETT-EEE-CCHHHHHHHHHHHCGGGEEEEEEESSCCTTBCCCC----HHHHHHHHHHHTCCEEEECTTTTTCHHH
T ss_pred --eeecCc-cCC-cCHHHHHHHHHhcCCCCEEEEEEECCcCCCceecC----HHHHHHHHHHCCCeEEEECCCchhhhhh
Confidence 100000 111 18999999999875 46777777776665666777 9999999999999999999998542211
Q ss_pred cCcccccCC-CCCcEEEec--ccccCCccchhhhee-CHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHhhh---cHH
Q 017259 179 RMLASDWEE-VRPDMVILG--KALGGGVIPVSAVLA-DKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRDE---KLA 251 (374)
Q Consensus 179 ~~~~~~~~~-~~~d~~s~s--K~~~~G~~~~G~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~aa~~al~~~~~~---~~~ 251 (374)
..+...... -..|.+++| |.+.... ..+.+.. +++..+.+.....+. ....+++......+ .+..+ ++.
T Consensus 245 ~~l~~~a~~~~~AD~~v~S~HK~l~a~~-~~~~l~~rd~~~~~~~~~~~~g~--~s~SpsL~l~~~l~-~~G~~g~~~~i 320 (450)
T 3bc8_A 245 MHLIQQGARVGRIDAFVQSLDKNFMVPV-GGAIIAGFNEPFIQDISKMYPGR--ASASPSLDVLITLL-SLGCSGYRKLL 320 (450)
T ss_dssp HHHHHHHHHHSCCCEEEEEHHHHHSCCS-SCEEEEESCHHHHHHHHHHSCSC--BCSHHHHHHHHHHH-HHHHHHHHHHH
T ss_pred HhHHHHHhcccCCCEEEECCccCCCchh-ccEEEEecCHHHHHHHHHHhhcC--CcccHHHHHHHHHH-HHHHHHHHHHH
Confidence 111111111 146888777 7766444 4445554 445555554321111 11223333333223 23333 334
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCC--chhHHHHHHHHHHCC---eEec------------
Q 017259 252 ERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTAL--PVSAYDICLKMKERG---ILAK------------ 314 (374)
Q Consensus 252 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~--~~~~~~~~~~l~~~G---i~v~------------ 314 (374)
++..++.+++++.++++...+.-.+...+..+.-..+.++.... ..+..++.-.+...| .-+.
T Consensus 321 ~~~~~~a~~l~~~l~~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~~~~D~tkl~i~~~~~g~sG~~v~~~~~~~~~~~~~ 400 (450)
T 3bc8_A 321 KERKEMFVYLSTQLKKLAEAHNERLLQTPHNPISLAMTLKTIDGHHDKAVTQLGSMLFTRQVSGARAVPLGNVQTVSGHT 400 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCBCCCTTCSSEEEEECTTTSSSSSCHHHHHHHHHHHTTCCSCEEECSCCEEEETTEE
T ss_pred HHHHHHHHHHHHHHHhhHHhcCceecCCccCCCcceeecccccccccCCCceeEEEecCCCCccceeeecccccchhHHH
Confidence 44567788888888887743311121111111112222321000 115566666666654 2222
Q ss_pred ---------cCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhccC
Q 017259 315 ---------PTHDTIVRLTPPLSISSNELQEGSKALHDVLELDL 349 (374)
Q Consensus 315 ---------~~~~~~lRi~~~~~~~~e~i~~~~~~l~~~~~~~~ 349 (374)
..+..++-+..+...+++++++++++|+++++ +.
T Consensus 401 l~~~gi~~E~~~~~~i~~~~sig~~~~di~~l~~~L~~~~~-~~ 443 (450)
T 3bc8_A 401 FRGFMSHADNYPCAYLNAAAAIGMKMQDVDLFIKRLDKCLN-IV 443 (450)
T ss_dssp EETTTTTSSCCSSCEEEEECCTTCCHHHHHHHHHHHHHHHH-HH
T ss_pred HHHcCCeeecCCCCcEEEEecCCCCHHHHHHHHHHHHHHHH-HH
Confidence 23457788888888999999999999999876 44
No 236
>3ou5_A Serine hydroxymethyltransferase, mitochondrial; structural genomics, STRU genomics consortium, SGC; 2.04A {Homo sapiens}
Probab=99.42 E-value=8.5e-12 Score=114.97 Aligned_cols=289 Identities=13% Similarity=0.071 Sum_probs=166.1
Q ss_pred HHHHHH-HhcccCCCe-----EEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCccccc-------ccc
Q 017259 24 PVFAER-LTSMFGYDM-----VLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAA-------ISM 90 (374)
Q Consensus 24 ~~l~~~-l~~~~~~~~-----~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~-------~~~ 90 (374)
+.|+.. .++.++.+. -+-..||+.|+.++..++ +++| |+|+..+...-|+..-. ...
T Consensus 102 E~la~~rak~lF~a~~A~w~VNVQP~SGs~AN~avy~Al-----l~PG-----D~ilg~~l~~GGHltHg~~~~~~~v~~ 171 (490)
T 3ou5_A 102 ELLCQRRALEAFDLDPAQWGVNVQPYSGSPANLAVYTAL-----LQPH-----DRIMGLDLPDGGHLTHGYMSDVKRISA 171 (490)
T ss_dssp HHHHHHHHHHHTTCCTTTEEEECCCSSHHHHHHHHHHHH-----CC-C-----CCEECBC--------------------
T ss_pred HHHHHHHHHHHhCCCccccCCCCCcCCHHHHHHHHHHHH-----cCCC-----CEEEecccCCCCcccccccCCCccccc
Confidence 334433 334567764 377889999999999999 6788 99999887754442211 111
Q ss_pred cCCccccccCCCCCCCceeccC-CCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEec
Q 017259 91 SCDNEAIRGFGPLLPGHLKVDF-GDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADE 169 (374)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~-~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~De 169 (374)
++. . |.....++..-.. -|.+.+++...++ ++++|++-.. ......+ +++++++|++.|.+|++|-
T Consensus 172 sg~---~--~~~~~Y~vd~~t~~IDyd~~~~~A~~~--kPklIi~G~S--aY~r~id----~~~~reIAd~vGA~Lm~Dm 238 (490)
T 3ou5_A 172 TSI---F--FESMPYKLNPKTGLIDYNQLALTARLF--RPRLIIAGTS--AYARLID----YARMREVCDEVKAHLLADM 238 (490)
T ss_dssp -------------CBCEETTTTEECHHHHHHHHHHH--CCSEEEECCS--SCCSCCC----HHHHHHHHHHHTCEEEEEC
T ss_pred ccc---c--ccccccccCCCCCcccHHHHHHHHhhc--CCCeEEECCc--cCccccC----HHHHHHHHhhcccEEEech
Confidence 111 0 1111111111000 1789999888876 5566666432 2233455 9999999999999999999
Q ss_pred ccc-CCcccccCcccccCCCCCcEEEec--ccccCCccchhhheeCHH---------------HHhhcCCC-CCCCCCCC
Q 017259 170 IQS-GLARSGRMLASDWEEVRPDMVILG--KALGGGVIPVSAVLADKE---------------VMLCIQPG-EHGSTFGG 230 (374)
Q Consensus 170 a~~-~~~~~g~~~~~~~~~~~~d~~s~s--K~~~~G~~~~G~~~~~~~---------------~~~~~~~~-~~~~~~~~ 230 (374)
+|. |+.-.|.. . +.+. ..|+++.+ |+|.|. |.|.++++++ +.+++... .-+..-++
T Consensus 239 AHiaGLVA~g~~-p-sP~~-~ADvVTtTTHKTLrGP--rGG~Il~~~~~~~~~~k~~~~~~~~~~kkin~aVFPg~qggp 313 (490)
T 3ou5_A 239 AHISGLVAAKVI-P-SPFK-HADIVTTTTHKTLRGA--RSGLIFYRKGVKAVDPKTGREIPYTFEDRINFAVFPSLQGGP 313 (490)
T ss_dssp GGGHHHHHTTSS-C-CGGG-TCSEEEEESSSTTCSC--SCEEEEEECSEEEECC--CCEEECCCHHHHHHHHTTTTCSSC
T ss_pred hhhhhhhccccc-C-Cccc-cceEEeccccccccCC--CceEEEeccccccccccccchhHHHHHHHHHhhcCccccccc
Confidence 997 54222211 1 1112 36888777 888865 5666776652 22222211 11111222
Q ss_pred CHHHHHHHHHHHHHHhh---hcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCchhHHHHHHHHH
Q 017259 231 NPLASAVAIASLDVIRD---EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMK 307 (374)
Q Consensus 231 ~~~~~~aa~~al~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~ 307 (374)
..-..++...++..... .++.+++.++.+.+.+.|.+.+.. ++.. ....+++++++.+. +.+..+..+.|.
T Consensus 314 ~~h~IAAkAVaf~Ea~~p~fk~Ya~qVv~NAkaLA~~L~~~G~~---vvsG-gTdnHlvLvDl~~~--g~tG~~ae~~Le 387 (490)
T 3ou5_A 314 HNHAIAAVAVALKQACTPMFREYSLQVLKNARAMADALLERGYS---LVSG-GTDNHLVLVDLRPK--GLDGARAERVLE 387 (490)
T ss_dssp CHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHTTCE---EGGG-SCSSSEEEEECGGG--TCCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhCCCe---eecC-CCCceEEEEecccc--CCCHHHHHHHHH
Confidence 33333333333443322 267778888888888888776432 2221 12357777777432 125777778888
Q ss_pred HCCeEecc---------CCCCEEEEecC----CCCCHHHHHHHHHHHHHHHh
Q 017259 308 ERGILAKP---------THDTIVRLTPP----LSISSNELQEGSKALHDVLE 346 (374)
Q Consensus 308 ~~Gi~v~~---------~~~~~lRi~~~----~~~~~e~i~~~~~~l~~~~~ 346 (374)
+.||.+.. .....|||..+ ....++|++++.+.|.++++
T Consensus 388 ~agItvNkN~iP~D~sp~~~SGiRiGTpa~TtRG~~e~dm~~IA~~I~~~l~ 439 (490)
T 3ou5_A 388 LVSITANKNTCPGDRSAITPGGLRLGAPALTSRQFREDDFRRVVDFIDEGVN 439 (490)
T ss_dssp HTTEECEEECCTTCCCSSSCSEEEEESHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HcCcEECCCCCCCCCCCCCCCeeEECCHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 89998842 23578999764 35688999999998887764
No 237
>3v7e_A Ribosome-associated protein L7AE-like; RNA-protein complex, K-turn, L7AE-like, A member L7AE/L30E superfamily; HET: SAM; 2.80A {Bacillus subtilis}
Probab=59.76 E-value=26 Score=23.74 Aligned_cols=48 Identities=13% Similarity=0.020 Sum_probs=33.7
Q ss_pred HHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEecccc
Q 017259 115 ITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQS 172 (374)
Q Consensus 115 ~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~ 172 (374)
.....+++++ .+.+.+++...- +++....|..+|++++++++.-..-.
T Consensus 16 ~~~v~kai~~--gkaklViiA~D~--------~~~~~~~i~~lc~~~~Ip~~~v~sk~ 63 (82)
T 3v7e_A 16 TKQTVKALKR--GSVKEVVVAKDA--------DPILTSSVVSLAEDQGISVSMVESMK 63 (82)
T ss_dssp HHHHHHHHTT--TCEEEEEEETTS--------CHHHHHHHHHHHHHHTCCEEEESCHH
T ss_pred HHHHHHHHHc--CCeeEEEEeCCC--------CHHHHHHHHHHHHHcCCCEEEECCHH
Confidence 4555666764 356666665543 45679999999999999998765433
No 238
>1vhx_A Putative holliday junction resolvase; structural genomics, hydrolase; 1.96A {Bacillus subtilis} SCOP: c.55.3.8
Probab=56.45 E-value=18 Score=27.88 Aligned_cols=57 Identities=18% Similarity=0.259 Sum_probs=34.4
Q ss_pred CHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHH-HHHHhcCCE-EEEecccc
Q 017259 114 DITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVR-DLCSKYNIL-MIADEIQS 172 (374)
Q Consensus 114 d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~-~l~~~~~i~-li~Dea~~ 172 (374)
+.+.|.+.++++ ++..+++.-+.+..|..-......+..+ .+.++.+++ ..+||.++
T Consensus 43 ~~~~l~~li~~~--~~~~ivVGlP~~~nGt~~~~~~~ar~f~~~L~~~~~lpV~~vDEr~T 101 (150)
T 1vhx_A 43 GLSRLSELIKDY--TIDKIVLGFPKNMNGTVGPRGEASQTFAKVLETTYNVPVVLWDERLT 101 (150)
T ss_dssp CHHHHHHHHTTS--EEEEEEEECCCCBTTBCCHHHHHHHHHHHHHHHHHCSCEEEECCSSC
T ss_pred HHHHHHHHHHHc--CCCEEEEeeeecCCcchhHHHHHHHHHHHHHHHhhCCCEEEecCCCC
Confidence 688899989876 5666777655444444322222223444 445556775 55699876
No 239
>1tks_A 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavin biosynthesis, 3,4-dihydroxy-2-B 4-phosphate synthase, synthetic gene, ISO; 1.60A {Candida albicans} SCOP: d.115.1.2 PDB: 1tku_A* 2ris_A 2riu_A*
Probab=56.08 E-value=10 Score=30.79 Aligned_cols=37 Identities=27% Similarity=0.373 Sum_probs=30.1
Q ss_pred CcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEE
Q 017259 127 DQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIA 167 (374)
Q Consensus 127 ~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~ 167 (374)
=.+++++++-..+..|.... +.++.+++++||+.+|.
T Consensus 158 l~Pa~vicEi~~~~dG~mar----~~~l~~fA~~h~l~iit 194 (204)
T 1tks_A 158 LQPAGVICELVRDEDGLMMR----LDDCIQFGKKHGIKIIN 194 (204)
T ss_dssp SCSBEEEEEBBCTTTCCBCB----HHHHHHHHHHHTCCEEE
T ss_pred CCceEEEEEEeECCCCCcCC----HHHHHHHHHHcCCcEEE
Confidence 46788888877566676666 99999999999999884
No 240
>3h0l_C Glutamyl-tRNA(Gln) amidotransferase subunit C; multi protein complex, ligase, protein biosynthesis; HET: ADP; 2.30A {Aquifex aeolicus} PDB: 3h0m_C 3h0r_C*
Probab=50.38 E-value=27 Score=24.40 Aligned_cols=38 Identities=13% Similarity=0.233 Sum_probs=33.0
Q ss_pred CCCHHHHHHHHHHHHHHHhccCCcCCCCCCCCCCCCCCc
Q 017259 328 SISSNELQEGSKALHDVLELDLPKMRKPKPADAPATPCH 366 (374)
Q Consensus 328 ~~~~e~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (374)
..++++++.+...|..++. .+..+...+..+.+|+.+.
T Consensus 17 ~l~eee~~~~~~~l~~Il~-~ve~L~evDt~~VeP~~~~ 54 (94)
T 3h0l_C 17 ELKEEEIEVFQKQLSDILD-FIDQLKELDTENVEPYIQE 54 (94)
T ss_dssp CCCHHHHHHHHHHHHHHHH-HTTTGGGSCCTTCCCCCCC
T ss_pred CCCHHHHHHHHHHHHHHHH-HHHHHhccCCCCcCcccCc
Confidence 4789999999999999999 8888888888888887543
No 241
>3j21_Z 50S ribosomal protein L30E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=50.30 E-value=31 Score=24.24 Aligned_cols=43 Identities=7% Similarity=0.000 Sum_probs=30.6
Q ss_pred HHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEE
Q 017259 115 ITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIA 167 (374)
Q Consensus 115 ~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~ 167 (374)
.+...+++++. +.+.+++-... +++..+.|..+|++++++++.
T Consensus 20 ~~~v~kai~~g--ka~lViiA~D~--------~~~~~~~i~~~c~~~~ip~~~ 62 (99)
T 3j21_Z 20 SNETIRLAKTG--GAKLIIVAKNA--------PKEIKDDIYYYAKLSDIPVYE 62 (99)
T ss_dssp HHHHHHHHHHT--CCSEEEEECCC--------CHHHHHHHHHHHHHTTCCEEE
T ss_pred HHHHHHHHHcC--CccEEEEeCCC--------CHHHHHHHHHHHHHcCCCEEE
Confidence 45566677753 55566665442 567799999999999999754
No 242
>4gqr_A Pancreatic alpha-amylase; glycosyl hydrolase, diabetes, obesity, digestion, glycosidas inhibition, flavonol, drug design; HET: NAG MYC; 1.20A {Homo sapiens} PDB: 1cpu_A* 1bsi_A 1u2y_A* 1u30_A* 1u33_A* 1xcw_A* 1xcx_A* 1xd0_A* 1xd1_A* 2qmk_A* 2qv4_A* 3bai_A* 3baj_A* 3baw_A* 3ij7_A* 1hny_A* 3ij9_A* 3ij8_A* 4gqq_A* 1kgw_A* ...
Probab=48.82 E-value=12 Score=34.81 Aligned_cols=26 Identities=8% Similarity=0.298 Sum_probs=23.9
Q ss_pred ChhHHHHHHHHHHhcCCEEEEecccc
Q 017259 147 PDGYLKAVRDLCSKYNILMIADEIQS 172 (374)
Q Consensus 147 ~~~~l~~l~~l~~~~~i~li~Dea~~ 172 (374)
+++.+++|++-||++||.||+|-++.
T Consensus 75 t~~df~~lv~~aH~~Gi~VilD~V~N 100 (496)
T 4gqr_A 75 NEDEFRNMVTRCNNVGVRIYVDAVIN 100 (496)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEEECCS
T ss_pred CHHHHHHHHHHHHHCCCEEEEEEccC
Confidence 78889999999999999999998864
No 243
>3bzy_B ESCU; auto cleavage protein, flagella, intein, T3SS, membrane, membrane protein, protein transport; 1.20A {Escherichia coli} SCOP: d.367.1.1 PDB: 3c00_B 3bzl_C 3bzo_B 3bzv_B 3c03_C 3bzz_B 3bzx_B
Probab=47.99 E-value=11 Score=25.83 Aligned_cols=22 Identities=23% Similarity=0.252 Sum_probs=19.5
Q ss_pred HHHHHHHHHhcCCEEEEecccc
Q 017259 151 LKAVRDLCSKYNILMIADEIQS 172 (374)
Q Consensus 151 l~~l~~l~~~~~i~li~Dea~~ 172 (374)
-++|.+++++||++++.|....
T Consensus 29 A~~I~~~A~e~~VPi~e~~~LA 50 (83)
T 3bzy_B 29 ALQIIKLAELYDIPVIEDIPLA 50 (83)
T ss_dssp HHHHHHHHHHTTCCEEECHHHH
T ss_pred HHHHHHHHHHcCCCEEeCHHHH
Confidence 6899999999999999997544
No 244
>3mio_A DHBP synthase, 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavin, ribulose-5-phosphate, FAD, FMN; 1.80A {Mycobacterium tuberculosis} SCOP: d.115.1.0 PDB: 3mgz_A 3mk5_A
Probab=45.72 E-value=25 Score=28.64 Aligned_cols=37 Identities=22% Similarity=0.304 Sum_probs=28.9
Q ss_pred CcEEEEEEccc-cCCCCcccCChhHHHHHHHHHHhcCCEEEE
Q 017259 127 DQIAGFLFEPI-QGEAGVIIPPDGYLKAVRDLCSKYNILMIA 167 (374)
Q Consensus 127 ~~~~~vi~~~~-~~~~g~~~~~~~~l~~l~~l~~~~~i~li~ 167 (374)
-.+++++++-+ .+..|.... +.++.+++++||+.+|.
T Consensus 157 l~Pa~vicEiv~~~~dG~mar----~~~l~~fA~~h~l~~it 194 (206)
T 3mio_A 157 LQPAGAICEIVSQKDEGSMAH----TDELRVFADEHGLALIT 194 (206)
T ss_dssp SCSBEEEEEBBCSSSTTSBCC----HHHHHHHHHHHTCEEEE
T ss_pred CCceEEEEEEeeeCCCCCcCC----HHHHHHHHHHcCCcEEE
Confidence 45788888873 345566665 99999999999999984
No 245
>3ip4_C Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase; multi protein complex, ligase, ATP-binding, nucleotide-bindi protein biosynthesis; 1.90A {Staphylococcus aureus subsp} SCOP: a.137.12.1 PDB: 2df4_C 2dqn_C* 2g5h_C 2g5i_C* 2f2a_C
Probab=45.17 E-value=34 Score=24.23 Aligned_cols=39 Identities=18% Similarity=0.144 Sum_probs=32.9
Q ss_pred CCCHHHHHHHHHHHHHHHhccCCcCCCCCCCCCCCCCCcc
Q 017259 328 SISSNELQEGSKALHDVLELDLPKMRKPKPADAPATPCHR 367 (374)
Q Consensus 328 ~~~~e~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (374)
..++++++.+...|..++. .+..+...+..+.+|+.+..
T Consensus 19 ~l~eeE~~~~~~~l~~Il~-~ve~L~evDt~~VeP~~~~~ 57 (100)
T 3ip4_C 19 QISPEETEEMANTLESILD-FAKQNDSADTEGVEPTYHVL 57 (100)
T ss_dssp CCCHHHHHHHHHHHHHHHH-HHGGGGGSCCTTCCCCSCCS
T ss_pred CCCHHHHHHHHHHHHHHHH-HHHHHhhcCCCCCCcccccc
Confidence 4789999999999999999 88888888888888875543
No 246
>1w41_A 50S ribosomal protein L30E; electrostatic interactions, thermostability, protein engineering; 1.7A {Thermococcus celer} SCOP: d.79.3.1 PDB: 3n4y_A 3lfo_A 1w40_A 1go0_A 1go1_A 1h7m_A 1w42_A 1w3e_X 3ra6_A 3ra5_A 3n4z_A 2bo1_A
Probab=44.51 E-value=39 Score=23.81 Aligned_cols=43 Identities=5% Similarity=-0.122 Sum_probs=30.1
Q ss_pred HHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEE
Q 017259 115 ITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIA 167 (374)
Q Consensus 115 ~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~ 167 (374)
.+...+++++. +.+++++.... +.+....|..+|++++++++.
T Consensus 21 ~~~v~kai~~g--ka~lViiA~D~--------~~~~~~~l~~~c~~~~vp~~~ 63 (101)
T 1w41_A 21 ARKSIQYAKMG--GAKLIIVARNA--------RPDIKEDIEYYARLSGIPVYE 63 (101)
T ss_dssp HHHHHHHHHHT--CCSEEEEETTS--------CHHHHHHHHHHHHHHTCCEEE
T ss_pred HHHHHHHHHcC--CCcEEEEeCCC--------CHHHHHHHHHHHHhcCCCEEE
Confidence 45566677653 45566664442 567799999999999999664
No 247
>2vt1_B Surface presentation of antigens protein SPAS; specificity switch, virulence, transmembrane, inner membrane, FLHB, YSCU, T3SS, plasmid; 2.00A {Shigella flexneri} SCOP: d.367.1.1
Probab=41.09 E-value=16 Score=25.60 Aligned_cols=23 Identities=22% Similarity=0.189 Sum_probs=19.9
Q ss_pred HHHHHHHHHHhcCCEEEEecccc
Q 017259 150 YLKAVRDLCSKYNILMIADEIQS 172 (374)
Q Consensus 150 ~l~~l~~l~~~~~i~li~Dea~~ 172 (374)
.-++|.++++++|++++.|....
T Consensus 28 ~A~~I~e~A~e~gVPi~e~~~LA 50 (93)
T 2vt1_B 28 CALAVRKYANEVGIPTVRDVKLA 50 (93)
T ss_dssp HHHHHHHHHHHTTCCEEECHHHH
T ss_pred HHHHHHHHHHHcCCCEEECHHHH
Confidence 37899999999999999997544
No 248
>1g94_A Alpha-amylase; beta-alpha-8-barrel, 3 domain structure, hydrolase; HET: DAF GLC; 1.74A {Pseudoalteromonas haloplanktis} SCOP: b.71.1.1 c.1.8.1 PDB: 1g9h_A* 1l0p_A 1aqm_A* 1aqh_A* 1b0i_A 1jd7_A 1jd9_A 1kxh_A*
Probab=40.94 E-value=19 Score=33.25 Aligned_cols=26 Identities=12% Similarity=0.203 Sum_probs=23.8
Q ss_pred ChhHHHHHHHHHHhcCCEEEEecccc
Q 017259 147 PDGYLKAVRDLCSKYNILMIADEIQS 172 (374)
Q Consensus 147 ~~~~l~~l~~l~~~~~i~li~Dea~~ 172 (374)
+.+.++++++-||++||.||.|-++-
T Consensus 63 t~~dfk~Lv~~aH~~Gi~VilD~V~N 88 (448)
T 1g94_A 63 NRAQFIDMVNRCSAAGVDIYVDTLIN 88 (448)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEEEECS
T ss_pred CHHHHHHHHHHHHHCCCEEEEEEeec
Confidence 67889999999999999999998865
No 249
>3on1_A BH2414 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; HET: MSE; 1.65A {Bacillus halodurans}
Probab=40.21 E-value=48 Score=23.31 Aligned_cols=43 Identities=16% Similarity=0.168 Sum_probs=30.1
Q ss_pred HHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEE
Q 017259 115 ITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIA 167 (374)
Q Consensus 115 ~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~ 167 (374)
.+...++|++ .+.+.+++...- ++...+.|..+|++++++++.
T Consensus 23 ~~~v~kai~~--gka~lViiA~D~--------~~~~~~~i~~~c~~~~ip~~~ 65 (101)
T 3on1_A 23 EEQVVKAVQN--GQVTLVILSSDA--------GIHTKKKLLDKCGSYQIPVKV 65 (101)
T ss_dssp HHHHHHHHHT--TCCSEEEEETTS--------CHHHHHHHHHHHHHHTCCEEE
T ss_pred HHHHHHHHHc--CCCcEEEEeCCC--------CHHHHHHHHHHHHHcCCCEEE
Confidence 4566677774 355566665443 445688999999999999874
No 250
>3t7y_A YOP proteins translocation protein U; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta; 2.10A {Chlamydia trachomatis} SCOP: d.367.1.0
Probab=40.19 E-value=15 Score=25.96 Aligned_cols=22 Identities=14% Similarity=0.206 Sum_probs=19.5
Q ss_pred HHHHHHHHHhcCCEEEEecccc
Q 017259 151 LKAVRDLCSKYNILMIADEIQS 172 (374)
Q Consensus 151 l~~l~~l~~~~~i~li~Dea~~ 172 (374)
-++|.+++++||++++.|....
T Consensus 44 A~~I~~~A~e~gVPi~e~~~LA 65 (97)
T 3t7y_A 44 AKRIIAEAEKYGVPIMRNVPLA 65 (97)
T ss_dssp HHHHHHHHHHHTCCEEECHHHH
T ss_pred HHHHHHHHHHcCCeEEECHHHH
Confidence 7889999999999999997644
No 251
>1g57_A DHBP synthase, 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavine biosynthesis, skeletal rearrangement, antimicrobial target; 1.40A {Escherichia coli} SCOP: d.115.1.2 PDB: 1g58_A 1iez_A 3ls6_A 3lrj_A 3lqu_A 3h07_A
Probab=39.49 E-value=35 Score=28.00 Aligned_cols=36 Identities=19% Similarity=0.299 Sum_probs=28.1
Q ss_pred CcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEE
Q 017259 127 DQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIA 167 (374)
Q Consensus 127 ~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~ 167 (374)
=.+++++++-. +..|.... +.++.+++++||+.+|.
T Consensus 166 l~Pa~vicEi~-~~dG~mar----~~~l~~fA~~h~l~~it 201 (217)
T 1g57_A 166 FKPAGVLCELT-NDDGTMAR----APECIEFANKHNMALVT 201 (217)
T ss_dssp SCSCEEEEEBB-CTTSSBCC----HHHHHHHHHHTTCEEEE
T ss_pred CCceEEEEEEe-CCCCCccC----HHHHHHHHHHcCCCEEE
Confidence 35778888755 44566665 99999999999999885
No 252
>1lwj_A 4-alpha-glucanotransferase; alpha-amylase family, acarbose, (beta/alpha)8 barrel; HET: ACG; 2.50A {Thermotoga maritima} SCOP: b.71.1.1 c.1.8.1 PDB: 1lwh_A*
Probab=39.31 E-value=26 Score=32.22 Aligned_cols=26 Identities=12% Similarity=0.078 Sum_probs=21.5
Q ss_pred ChhHHHHHHHHHHhcCCEEEEecccc
Q 017259 147 PDGYLKAVRDLCSKYNILMIADEIQS 172 (374)
Q Consensus 147 ~~~~l~~l~~l~~~~~i~li~Dea~~ 172 (374)
+.+.++++++-||++|+.||.|-+..
T Consensus 68 t~~df~~lv~~aH~~Gi~VilD~V~N 93 (441)
T 1lwj_A 68 SEREFKEMIEAFHDSGIKVVLDLPIH 93 (441)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEEECTT
T ss_pred CHHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 57778899999999999999997753
No 253
>1snn_A DHBP synthase, 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavin biosynthesis, isomerase; HET: 5RP; 1.55A {Methanocaldococcus jannaschii} SCOP: d.115.1.2 PDB: 1pvy_A* 1pvw_A
Probab=39.18 E-value=34 Score=28.31 Aligned_cols=37 Identities=11% Similarity=0.161 Sum_probs=29.3
Q ss_pred CCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEE
Q 017259 126 GDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIA 167 (374)
Q Consensus 126 ~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~ 167 (374)
+=++++++++-.+ ..|.... ++++.+++++||+.+|.
T Consensus 176 Gl~Pa~VicEi~~-ddG~mar----~~~l~~fA~~h~l~~it 212 (227)
T 1snn_A 176 NLVPITTICEMMG-DDGNAMS----KNETKRYAEKHNLIYLS 212 (227)
T ss_dssp TSCSEEEEEEEBC-TTSSBCC----HHHHHHHHHHHTCCEEE
T ss_pred CCCceEEEEEEeC-CCCCcCC----HHHHHHHHHHcCCcEEE
Confidence 3467888888774 4466665 99999999999999885
No 254
>3cpq_A 50S ribosomal protein L30E; RNA-protein, elongation factor, ribonucleoprotein, structural genomics, NPPSFA; 1.90A {Methanocaldococcus jannaschii}
Probab=38.63 E-value=52 Score=23.62 Aligned_cols=42 Identities=14% Similarity=0.037 Sum_probs=29.3
Q ss_pred HHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEE
Q 017259 115 ITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMI 166 (374)
Q Consensus 115 ~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li 166 (374)
.....++|++ .+.+++++...- +.+....|..+|++++++++
T Consensus 26 ~~~v~kai~~--gka~lViiA~D~--------~~~~~~~l~~~c~~~~Vp~~ 67 (110)
T 3cpq_A 26 SKRTIKFVKH--GEGKLVVLAGNI--------PKDLEEDVKYYAKLSNIPVY 67 (110)
T ss_dssp HHHHHHHHHT--TCCSEEEECTTC--------BHHHHHHHHHHHHHTTCCEE
T ss_pred HHHHHHHHHc--CCceEEEEeCCC--------CHHHHHHHHHHHHHcCCCEE
Confidence 4556667764 245566664432 56669999999999999965
No 255
>3c01_E Surface presentation of antigens protein SPAS; auto cleavage protein, flagella, ESCU, YSCU, intein, T3SS, M inner membrane, transmembrane; 2.60A {Salmonella typhimurium} SCOP: d.367.1.1
Probab=38.43 E-value=17 Score=25.79 Aligned_cols=23 Identities=26% Similarity=0.208 Sum_probs=19.8
Q ss_pred HHHHHHHHHHhcCCEEEEecccc
Q 017259 150 YLKAVRDLCSKYNILMIADEIQS 172 (374)
Q Consensus 150 ~l~~l~~l~~~~~i~li~Dea~~ 172 (374)
.-++|.++++++|++++.|....
T Consensus 28 ~A~~I~e~A~e~gVPi~e~~~LA 50 (98)
T 3c01_E 28 RALAVRAYAEKVGVPVIVDIKLA 50 (98)
T ss_dssp HHHHHHHHHHHHTCCEEECHHHH
T ss_pred HHHHHHHHHHHcCCCeecCHHHH
Confidence 37899999999999999997644
No 256
>3v7q_A Probable ribosomal protein YLXQ; L7AE superfamily, K-turn binding, K-turn RNA, hypothetical R protein, RNA binding protein; HET: CIT; 1.55A {Bacillus subtilis}
Probab=38.42 E-value=59 Score=22.87 Aligned_cols=44 Identities=16% Similarity=0.141 Sum_probs=30.8
Q ss_pred HHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEe
Q 017259 115 ITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIAD 168 (374)
Q Consensus 115 ~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~D 168 (374)
.+...+++++ .+.+.+++-..- ++.....|..+|+.++++++.-
T Consensus 24 ~~~v~kai~~--gka~lViiA~D~--------~~~~~~~i~~~c~~~~vp~~~~ 67 (101)
T 3v7q_A 24 EDLVIKEIRN--ARAKLVLLTEDA--------SSNTAKKVTDKCNYYKVPYKKV 67 (101)
T ss_dssp HHHHHHHHHT--TCCSEEEEETTS--------CHHHHHHHHHHHHHTTCCEEEE
T ss_pred hhhhHHHHhc--CceeEEEEeccc--------cccchhhhcccccccCCCeeee
Confidence 4566677774 355566665443 4556889999999999988754
No 257
>4a18_G RPL30; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_G 4a1b_G 4a1d_G 4adx_6
Probab=36.89 E-value=74 Score=22.50 Aligned_cols=43 Identities=9% Similarity=-0.019 Sum_probs=30.4
Q ss_pred HHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEE
Q 017259 115 ITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIA 167 (374)
Q Consensus 115 ~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~ 167 (374)
.+...++|++. +.+.+++...- ++...+.|..+|.+++++++.
T Consensus 27 ~~~v~kai~~g--kaklViiA~D~--------~~~~~~~i~~~c~~~~ip~~~ 69 (104)
T 4a18_G 27 YKSTIKAIRNG--TAKLVFISNNC--------PTVRKSEIEYYASLAQISIHH 69 (104)
T ss_dssp HHHHHHHHHHT--CCCEEEECTTS--------CHHHHHHHHHHHHHHTCEEEE
T ss_pred HHHHHHHHHcC--CceEEEEeCCC--------CHHHHHHHHHHHHHcCCcEEE
Confidence 45566677753 56666665533 455688999999999999983
No 258
>1ud2_A Amylase, alpha-amylase; calcium-free, alkaline, hydrolase; 2.13A {Bacillus SP} SCOP: b.71.1.1 c.1.8.1 PDB: 1ud4_A 1ud5_A 1ud6_A 1ud8_A 1ud3_A
Probab=36.81 E-value=24 Score=32.86 Aligned_cols=26 Identities=12% Similarity=0.097 Sum_probs=23.9
Q ss_pred ChhHHHHHHHHHHhcCCEEEEecccc
Q 017259 147 PDGYLKAVRDLCSKYNILMIADEIQS 172 (374)
Q Consensus 147 ~~~~l~~l~~l~~~~~i~li~Dea~~ 172 (374)
+.+.+++|++-||++||.||.|-+..
T Consensus 79 t~~df~~lv~~aH~~Gi~VilD~V~N 104 (480)
T 1ud2_A 79 TKAQLERAIGSLKSNDINVYGDVVMN 104 (480)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEEECCS
T ss_pred CHHHHHHHHHHHHHCCCEEEEEEccC
Confidence 68889999999999999999998864
No 259
>3bh4_A Alpha-amylase; calcium, carbohydrate metabolism, glycosidase, hydrolase, metal-binding, secreted; 1.40A {Bacillus amyloliquefaciens} PDB: 1e43_A 1e3z_A* 1e40_A* 1e3x_A 1vjs_A 1ob0_A 1bli_A 1bpl_B 1bpl_A
Probab=36.67 E-value=25 Score=32.87 Aligned_cols=26 Identities=12% Similarity=0.101 Sum_probs=23.8
Q ss_pred ChhHHHHHHHHHHhcCCEEEEecccc
Q 017259 147 PDGYLKAVRDLCSKYNILMIADEIQS 172 (374)
Q Consensus 147 ~~~~l~~l~~l~~~~~i~li~Dea~~ 172 (374)
+.+.+++|++-||++||.||.|-+..
T Consensus 77 t~~df~~lv~~aH~~Gi~VilD~V~N 102 (483)
T 3bh4_A 77 TKSELQDAIGSLHSRNVQVYGDVVLN 102 (483)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEEECCS
T ss_pred CHHHHHHHHHHHHHCCCEEEEEEccC
Confidence 67889999999999999999998864
No 260
>3u5e_c L32, RP73, YL38, 60S ribosomal protein L30; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3izc_f 3izs_f 3o58_Z 3o5h_Z 1t0k_B 3u5i_c 4b6a_c 1ck2_A 1cn7_A 1nmu_B* 3jyw_2
Probab=36.61 E-value=66 Score=22.83 Aligned_cols=42 Identities=5% Similarity=-0.058 Sum_probs=30.5
Q ss_pred HHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEE
Q 017259 115 ITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMI 166 (374)
Q Consensus 115 ~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li 166 (374)
.+...++|++ .+.+.+++-..- ++...+.|..+|..++++++
T Consensus 27 ~~~v~kai~~--gkaklVilA~D~--------~~~~~~~i~~~c~~~~ip~~ 68 (105)
T 3u5e_c 27 YKSTVKSLRQ--GKSKLIIIAANT--------PVLRKSELEYYAMLSKTKVY 68 (105)
T ss_dssp HHHHHHHHHT--TCCSEEEECTTS--------CHHHHHHHHHHHHHHTCEEE
T ss_pred HHHHHHHHHc--CCceEEEEeCCC--------CHHHHHHHHHHHHHcCCCEE
Confidence 4556667774 355666665433 56668999999999999999
No 261
>1ht6_A AMY1, alpha-amylase isozyme 1; barley, beta-alpha-barrel, hydrolase; 1.50A {Hordeum vulgare} SCOP: b.71.1.1 c.1.8.1 PDB: 1p6w_A* 1rpk_A* 3bsg_A 2qpu_A* 1rp8_A* 1rp9_A* 2qps_A 3bsh_A* 1ava_A 1amy_A 1bg9_A*
Probab=36.30 E-value=26 Score=31.88 Aligned_cols=26 Identities=19% Similarity=0.130 Sum_probs=23.9
Q ss_pred ChhHHHHHHHHHHhcCCEEEEecccc
Q 017259 147 PDGYLKAVRDLCSKYNILMIADEIQS 172 (374)
Q Consensus 147 ~~~~l~~l~~l~~~~~i~li~Dea~~ 172 (374)
+.+.++++++-||++|+.||.|-+..
T Consensus 67 t~~d~~~lv~~~h~~Gi~VilD~V~N 92 (405)
T 1ht6_A 67 NAAELKSLIGALHGKGVQAIADIVIN 92 (405)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEEECCS
T ss_pred CHHHHHHHHHHHHHCCCEEEEEECcC
Confidence 67889999999999999999998875
No 262
>1wza_A Alpha-amylase A; hydrolase, halophilic, thermophilic; 1.60A {Halothermothrix orenii} SCOP: b.71.1.1 c.1.8.1
Probab=36.24 E-value=31 Score=32.21 Aligned_cols=26 Identities=12% Similarity=0.020 Sum_probs=23.4
Q ss_pred ChhHHHHHHHHHHhcCCEEEEecccc
Q 017259 147 PDGYLKAVRDLCSKYNILMIADEIQS 172 (374)
Q Consensus 147 ~~~~l~~l~~l~~~~~i~li~Dea~~ 172 (374)
+.+.+++|++-||++||.||.|-++.
T Consensus 80 t~~d~~~Lv~~aH~~Gi~VilD~V~N 105 (488)
T 1wza_A 80 TLEDFHKLVEAAHQRGIKVIIDLPIN 105 (488)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEECCCS
T ss_pred CHHHHHHHHHHHHHCCCEEEEEeccc
Confidence 67889999999999999999998864
No 263
>4aie_A Glucan 1,6-alpha-glucosidase; hydrolase, glycoside hydrolase 13; HET: MES GOL; 2.05A {Lactobacillus acidophilus ncfm}
Probab=36.00 E-value=30 Score=32.66 Aligned_cols=26 Identities=8% Similarity=0.103 Sum_probs=23.5
Q ss_pred ChhHHHHHHHHHHhcCCEEEEecccc
Q 017259 147 PDGYLKAVRDLCSKYNILMIADEIQS 172 (374)
Q Consensus 147 ~~~~l~~l~~l~~~~~i~li~Dea~~ 172 (374)
+.+.+++|++-||++||.||.|-++.
T Consensus 78 t~~dfk~Lv~~aH~~Gi~VilD~V~N 103 (549)
T 4aie_A 78 TMADMDELISKAKEHHIKIVMDLVVN 103 (549)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEEECCS
T ss_pred CHHHHHHHHHHHHHCCCEEEEEECcc
Confidence 67889999999999999999998864
No 264
>1hvx_A Alpha-amylase; hydrolase, glycosyltransferase, thermostability; 2.00A {Geobacillus stearothermophilus} SCOP: b.71.1.1 c.1.8.1
Probab=35.99 E-value=26 Score=33.14 Aligned_cols=26 Identities=8% Similarity=0.010 Sum_probs=23.9
Q ss_pred ChhHHHHHHHHHHhcCCEEEEecccc
Q 017259 147 PDGYLKAVRDLCSKYNILMIADEIQS 172 (374)
Q Consensus 147 ~~~~l~~l~~l~~~~~i~li~Dea~~ 172 (374)
+.+.++++++-||++||.||.|-+..
T Consensus 80 t~~dfk~Lv~~aH~~Gi~VilD~V~N 105 (515)
T 1hvx_A 80 TKAQYLQAIQAAHAAGMQVYADVVFD 105 (515)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEEECCS
T ss_pred CHHHHHHHHHHHHHCCCEEEEEEecC
Confidence 68889999999999999999998864
No 265
>1mxg_A Alpha amylase; hyperthermostable, family 13 glycosyl hydrola (beta/alpha)8-barrel, hydrolase; HET: ACR ETE; 1.60A {Pyrococcus woesei} SCOP: b.71.1.1 c.1.8.1 PDB: 1mwo_A* 1mxd_A* 3qgv_A*
Probab=35.81 E-value=26 Score=32.21 Aligned_cols=26 Identities=23% Similarity=0.271 Sum_probs=23.8
Q ss_pred ChhHHHHHHHHHHhcCCEEEEecccc
Q 017259 147 PDGYLKAVRDLCSKYNILMIADEIQS 172 (374)
Q Consensus 147 ~~~~l~~l~~l~~~~~i~li~Dea~~ 172 (374)
+.+.++++++-||++|+.||.|-+..
T Consensus 85 t~~df~~lv~~~H~~Gi~VilD~V~N 110 (435)
T 1mxg_A 85 SKEELVRLIQTAHAYGIKVIADVVIN 110 (435)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEEECCS
T ss_pred CHHHHHHHHHHHHHCCCEEEEEECcc
Confidence 68889999999999999999998764
No 266
>1wpc_A Glucan 1,4-alpha-maltohexaosidase; maltohexaose-producing amylase, alpha-amylase, acarbose, HYD; HET: ACI GLC GAL; 1.90A {Bacillus SP} SCOP: b.71.1.1 c.1.8.1 PDB: 1wp6_A* 2d3l_A* 2d3n_A* 2die_A 2gjp_A* 2gjr_A 1w9x_A*
Probab=35.39 E-value=27 Score=32.66 Aligned_cols=26 Identities=15% Similarity=0.135 Sum_probs=23.9
Q ss_pred ChhHHHHHHHHHHhcCCEEEEecccc
Q 017259 147 PDGYLKAVRDLCSKYNILMIADEIQS 172 (374)
Q Consensus 147 ~~~~l~~l~~l~~~~~i~li~Dea~~ 172 (374)
+.+.+++|++-||++||.||.|-+..
T Consensus 81 t~~df~~Lv~~aH~~Gi~VilD~V~N 106 (485)
T 1wpc_A 81 TRSQLQAAVTSLKNNGIQVYGDVVMN 106 (485)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEEECCS
T ss_pred CHHHHHHHHHHHHHCCCEEEEEEecc
Confidence 68889999999999999999998864
No 267
>2guy_A Alpha-amylase A; (beta-alpha) 8 barrel, hydrolase; HET: NAG BMA; 1.59A {Aspergillus oryzae} SCOP: b.71.1.1 c.1.8.1 PDB: 2gvy_A* 3kwx_A* 6taa_A 7taa_A* 2taa_A
Probab=33.87 E-value=29 Score=32.29 Aligned_cols=26 Identities=15% Similarity=0.261 Sum_probs=23.8
Q ss_pred ChhHHHHHHHHHHhcCCEEEEecccc
Q 017259 147 PDGYLKAVRDLCSKYNILMIADEIQS 172 (374)
Q Consensus 147 ~~~~l~~l~~l~~~~~i~li~Dea~~ 172 (374)
+.+.++++++-||++|+.||.|-+..
T Consensus 96 t~~df~~lv~~~H~~Gi~VilD~V~N 121 (478)
T 2guy_A 96 TADDLKALSSALHERGMYLMVDVVAN 121 (478)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEEECCS
T ss_pred CHHHHHHHHHHHHHCCCEEEEEECcc
Confidence 68889999999999999999998764
No 268
>2dh2_A 4F2 cell-surface antigen heavy chain; TIM-barrel, glycosidase like, antiparallel beta-sheet, greek terminal domain, extracellular domain; 2.10A {Homo sapiens} PDB: 2dh3_A
Probab=33.46 E-value=38 Score=31.02 Aligned_cols=26 Identities=15% Similarity=0.132 Sum_probs=23.7
Q ss_pred ChhHHHHHHHHHHhcCCEEEEecccc
Q 017259 147 PDGYLKAVRDLCSKYNILMIADEIQS 172 (374)
Q Consensus 147 ~~~~l~~l~~l~~~~~i~li~Dea~~ 172 (374)
+.+.+++|++-||++|+.||.|-++.
T Consensus 80 t~~d~~~lv~~ah~~Gi~vilD~V~N 105 (424)
T 2dh2_A 80 SKEDFDSLLQSAKKKSIRVILDLTPN 105 (424)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEECCTT
T ss_pred CHHHHHHHHHHHHHCCCEEEEEECCC
Confidence 57889999999999999999998875
No 269
>1jae_A Alpha-amylase; glycosidase, carbohydrate metabolism, 4-glucan-4-glucanohydrolase, hydrolase; 1.65A {Tenebrio molitor} SCOP: b.71.1.1 c.1.8.1 PDB: 1clv_A 1tmq_A 1viw_A*
Probab=33.20 E-value=26 Score=32.66 Aligned_cols=26 Identities=8% Similarity=0.278 Sum_probs=23.7
Q ss_pred ChhHHHHHHHHHHhcCCEEEEecccc
Q 017259 147 PDGYLKAVRDLCSKYNILMIADEIQS 172 (374)
Q Consensus 147 ~~~~l~~l~~l~~~~~i~li~Dea~~ 172 (374)
+.+.++++++-||++|+.||.|-++-
T Consensus 73 t~~d~~~lv~~~h~~Gi~VilD~V~N 98 (471)
T 1jae_A 73 DESAFTDMTRRCNDAGVRIYVDAVIN 98 (471)
T ss_dssp EHHHHHHHHHHHHHTTCEEEEEECCS
T ss_pred CHHHHHHHHHHHHHCCCEEEEEEecc
Confidence 57889999999999999999998865
No 270
>2aaa_A Alpha-amylase; glycosidase; 2.10A {Aspergillus niger} SCOP: b.71.1.1 c.1.8.1
Probab=32.86 E-value=30 Score=32.26 Aligned_cols=26 Identities=15% Similarity=0.290 Sum_probs=23.8
Q ss_pred ChhHHHHHHHHHHhcCCEEEEecccc
Q 017259 147 PDGYLKAVRDLCSKYNILMIADEIQS 172 (374)
Q Consensus 147 ~~~~l~~l~~l~~~~~i~li~Dea~~ 172 (374)
+.+.++++++-||++|+.||.|-++.
T Consensus 96 t~~df~~lv~~~H~~Gi~VilD~V~N 121 (484)
T 2aaa_A 96 TADNLKSLSDALHARGMYLMVDVVPD 121 (484)
T ss_dssp CHHHHHHHHHHHHTTTCEEEEEECCS
T ss_pred CHHHHHHHHHHHHHCCCEEEEEECcC
Confidence 67889999999999999999998864
No 271
>2z1k_A (NEO)pullulanase; hydrolase, structural genomics, NPPSFA, national project on structural and functional analyses; HET: GLC; 2.30A {Thermus thermophilus}
Probab=32.79 E-value=31 Score=32.05 Aligned_cols=59 Identities=8% Similarity=0.135 Sum_probs=38.0
Q ss_pred CHHHHHHHHHhcC-CcEEEEEEccccCCC---C----------cccCChhHHHHHHHHHHhcCCEEEEecccc
Q 017259 114 DITALEKIFKESG-DQIAGFLFEPIQGEA---G----------VIIPPDGYLKAVRDLCSKYNILMIADEIQS 172 (374)
Q Consensus 114 d~~~le~~l~~~~-~~~~~vi~~~~~~~~---g----------~~~~~~~~l~~l~~l~~~~~i~li~Dea~~ 172 (374)
|+..+.+.|..-. =.+.+|.++|+.... | ...-+.+.++++++-||++|+.||.|-++.
T Consensus 48 ~~~gi~~~LdyL~~LGv~~I~l~Pi~~~~~~~gY~~~dy~~idp~~Gt~~df~~lv~~~h~~Gi~VilD~V~N 120 (475)
T 2z1k_A 48 TLWGVAEKLPYLLDLGVEAIYLNPVFASTANHRYHTVDYFQVDPILGGNEALRHLLEVAHAHGVRVILDGVFN 120 (475)
T ss_dssp CHHHHHHTHHHHHHHTCCEEEECCCEEESSTTCCSEEEEEEECGGGTCHHHHHHHHHHHHHTTCEEEEEECCS
T ss_pred CHHHHHHHhHHHHHcCCCEEEECCCcCCCCCCCcCCCCcCccCcccCCHHHHHHHHHHHHHCCCEEEEEEecc
Confidence 5665555544211 135667777653211 0 011268889999999999999999998764
No 272
>1gcy_A Glucan 1,4-alpha-maltotetrahydrolase; beta-alpha-barrel, beta sheet; 1.60A {Pseudomonas stutzeri} SCOP: b.71.1.1 c.1.8.1 PDB: 1jdc_A* 1jda_A* 1jdd_A* 1qi5_A* 1qi3_A* 1qi4_A* 2amg_A 1qpk_A*
Probab=32.38 E-value=32 Score=32.61 Aligned_cols=26 Identities=12% Similarity=0.194 Sum_probs=24.1
Q ss_pred ChhHHHHHHHHHHhcCCEEEEecccc
Q 017259 147 PDGYLKAVRDLCSKYNILMIADEIQS 172 (374)
Q Consensus 147 ~~~~l~~l~~l~~~~~i~li~Dea~~ 172 (374)
+.+.++++++-||++||.||.|-++.
T Consensus 91 t~~dfk~Lv~~aH~~GI~VilD~V~N 116 (527)
T 1gcy_A 91 SDAQLRQAASALGGAGVKVLYDVVPN 116 (527)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEEECCS
T ss_pred CHHHHHHHHHHHHHCCCEEEEEEeec
Confidence 68889999999999999999998865
No 273
>1x60_A Sporulation-specific N-acetylmuramoyl-L-alanine amidase; CWLC, CWLCR, peptidoglycan, cell WALL lytic amidase, tandem repeats, hydrolase; NMR {Bacillus subtilis}
Probab=32.19 E-value=83 Score=20.62 Aligned_cols=45 Identities=9% Similarity=0.113 Sum_probs=34.6
Q ss_pred hHHHHHHHHHHCCe--EeccCCCCEEEEecCCCCCHHHHHHHHHHHHH
Q 017259 298 SAYDICLKMKERGI--LAKPTHDTIVRLTPPLSISSNELQEGSKALHD 343 (374)
Q Consensus 298 ~~~~~~~~l~~~Gi--~v~~~~~~~lRi~~~~~~~~e~i~~~~~~l~~ 343 (374)
.++.+.+.|...|+ .+.. .+.+.|+..+...+.++.+.+++.|+.
T Consensus 22 ~A~~~~~~L~~~g~~~~i~~-~~~~yRV~vGpf~~~~~A~~~~~~L~~ 68 (79)
T 1x60_A 22 NADSLASNAEAKGFDSIVLL-KDGLYKVQIGAFSSKDNADTLAARAKN 68 (79)
T ss_dssp HHHHHHHHHHHHTCCEEEEE-ETTEEEEEEEEESSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCeEEec-CCcEEEEEECCcCCHHHHHHHHHHHHH
Confidence 78889999988874 3333 356778877777889999999998876
No 274
>2aif_A Ribosomal protein L7A; high-mobility like protein, transcription factor, structural genomics, structural genomics consortium, SGC; 1.90A {Cryptosporidium parvum} SCOP: d.79.3.1
Probab=31.63 E-value=1.4e+02 Score=22.33 Aligned_cols=45 Identities=13% Similarity=0.070 Sum_probs=29.6
Q ss_pred HHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEe
Q 017259 115 ITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIAD 168 (374)
Q Consensus 115 ~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~D 168 (374)
.....++|++ .+.+.+++...-. +......|..+|++++++++.-
T Consensus 46 ~~~v~kal~~--gkaklViiA~D~~-------~~~~~~~l~~lc~~~~IP~~~v 90 (135)
T 2aif_A 46 ANEATKALNR--GIAEIVLLAADAE-------PLEILLHLPLVCEDKNTPYVFV 90 (135)
T ss_dssp HHHHHHHHHT--TCEEEEEEETTCS-------CHHHHHHHHHHHHHTTCCEEEE
T ss_pred HHHHHHHHHc--CCCeEEEEecCCC-------hHHHHhHHHHHHHhcCCcEEEE
Confidence 4555667764 3566666655432 2233599999999999988743
No 275
>2wc7_A Alpha amylase, catalytic region; CD/PUL-hydrolyzing enzymes, hydrolase, glycosidase, neopullu; 2.37A {Nostoc punctiforme} PDB: 2wcs_A 2wkg_A
Probab=31.44 E-value=32 Score=32.09 Aligned_cols=26 Identities=19% Similarity=0.263 Sum_probs=23.3
Q ss_pred ChhHHHHHHHHHHhcCCEEEEecccc
Q 017259 147 PDGYLKAVRDLCSKYNILMIADEIQS 172 (374)
Q Consensus 147 ~~~~l~~l~~l~~~~~i~li~Dea~~ 172 (374)
+.+.+++|++-||++|+.||.|-++.
T Consensus 101 t~~df~~Lv~~aH~~Gi~VilD~V~N 126 (488)
T 2wc7_A 101 GNEAFKELLDAAHQRNIKVVLDGVFN 126 (488)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEECCS
T ss_pred CHHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 56789999999999999999998764
No 276
>1ua7_A Alpha-amylase; beta-alpha-barrels, acarbose, greek-KEY motif, hydrolase; HET: ACI GLD GLC G6D BGC; 2.21A {Bacillus subtilis} SCOP: b.71.1.1 c.1.8.1 PDB: 1bag_A* 3dc0_A
Probab=31.42 E-value=28 Score=31.80 Aligned_cols=26 Identities=19% Similarity=0.344 Sum_probs=23.7
Q ss_pred ChhHHHHHHHHHHhcCCEEEEecccc
Q 017259 147 PDGYLKAVRDLCSKYNILMIADEIQS 172 (374)
Q Consensus 147 ~~~~l~~l~~l~~~~~i~li~Dea~~ 172 (374)
+.+.++++++-||++||.||.|-+..
T Consensus 73 ~~~d~~~lv~~~h~~Gi~VilD~V~N 98 (422)
T 1ua7_A 73 TEQEFKEMCAAAEEYGIKVIVDAVIN 98 (422)
T ss_dssp EHHHHHHHHHHHHTTTCEEEEEECCS
T ss_pred CHHHHHHHHHHHHHCCCEEEEEeccC
Confidence 67889999999999999999998864
No 277
>3dhu_A Alpha-amylase; structural genomics, hydrolase, glycosidase, PSI-2, protein structure initiative; 2.00A {Lactobacillus plantarum}
Probab=31.31 E-value=34 Score=31.48 Aligned_cols=26 Identities=15% Similarity=0.194 Sum_probs=23.6
Q ss_pred ChhHHHHHHHHHHhcCCEEEEecccc
Q 017259 147 PDGYLKAVRDLCSKYNILMIADEIQS 172 (374)
Q Consensus 147 ~~~~l~~l~~l~~~~~i~li~Dea~~ 172 (374)
+.+.++++++-||++|+.||+|-+..
T Consensus 82 t~~~~~~lv~~~h~~Gi~vi~D~V~N 107 (449)
T 3dhu_A 82 TLADFKALTDRAHELGMKVMLDIVYN 107 (449)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEEECCS
T ss_pred CHHHHHHHHHHHHHCCCEEEEEEccC
Confidence 67889999999999999999998764
No 278
>2lbw_A H/ACA ribonucleoprotein complex subunit 2; L7AE, snoRNP, scaRNP, RNA binding protein; NMR {Saccharomyces cerevisiae} PDB: 2lbx_A
Probab=31.26 E-value=92 Score=22.73 Aligned_cols=46 Identities=11% Similarity=0.145 Sum_probs=30.2
Q ss_pred HHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEec
Q 017259 115 ITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADE 169 (374)
Q Consensus 115 ~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~De 169 (374)
.....++|++. +...+++...-. +.+....|..+|++++++++.-.
T Consensus 25 ~~~v~kai~~g--kakLViiA~D~~-------~~~~~~~l~~lc~~~~VP~~~v~ 70 (121)
T 2lbw_A 25 VKEVVKALRKG--EKGLVVIAGDIW-------PADVISHIPVLCEDHSVPYIFIP 70 (121)
T ss_dssp HHHHHHHHHHS--CCCEEEECTTCS-------CTTHHHHHHHHHHHTCCCEEECC
T ss_pred HHHHHHHHHcC--CceEEEEeCCCC-------HHHHHHHHHHHHHhcCCcEEEEC
Confidence 45556667653 566666655432 22347889999999999987543
No 279
>1x7f_A Outer surface protein; structural genomics, unknown function, MCSG, PSI, midwest center for struct genomics; 2.30A {Bacillus cereus atcc 14579} SCOP: b.62.1.2 c.1.8.12
Probab=30.78 E-value=41 Score=30.34 Aligned_cols=26 Identities=15% Similarity=0.118 Sum_probs=21.5
Q ss_pred ChhHHHHHHHHHHhcCCEEEEecccc
Q 017259 147 PDGYLKAVRDLCSKYNILMIADEIQS 172 (374)
Q Consensus 147 ~~~~l~~l~~l~~~~~i~li~Dea~~ 172 (374)
-.+.+++|.++|+++|+-+|+|=.-.
T Consensus 72 ~~~~~~~l~~~a~~~g~~vi~DVsp~ 97 (385)
T 1x7f_A 72 IVAEFKEIINHAKDNNMEVILDVAPA 97 (385)
T ss_dssp --HHHHHHHHHHHHTTCEEEEEECTT
T ss_pred HHHHHHHHHHHHHHCCCEEEEECCHH
Confidence 46779999999999999999996654
No 280
>3ipw_A Hydrolase TATD family protein; niaid, ssgcid, seattle structural genomics center for infect disease, dysentery, liver abcess; 1.95A {Entamoeba histolytica hm-1}
Probab=30.10 E-value=2.8e+02 Score=24.22 Aligned_cols=119 Identities=10% Similarity=0.063 Sum_probs=62.1
Q ss_pred CCcHHHHHHHHhcccCCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccCCcccccc
Q 017259 20 NDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRG 99 (374)
Q Consensus 20 ~~~~~~l~~~l~~~~~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~ 99 (374)
.+..+++.++..+ .|.+.++.+++.-+....++.++..+. + + ....|...- +.|.. ....
T Consensus 51 ~~d~~~vl~rA~~-aGV~~ii~~g~~~~~~~~~~~La~~~~----~-~-~~~~v~~~~-GiHP~------------~~~~ 110 (325)
T 3ipw_A 51 EEDIDVVLQRAER-NGLSHIIITSGCLNDFKKAIEIINKYQ----N-L-TNIKLVTTI-GVHPT------------RTNE 110 (325)
T ss_dssp CCCHHHHHHHHHH-TTEEEEEECCCSHHHHHHHHHHHHHHG----G-G-CSSEEEEEE-CCCGG------------GGGG
T ss_pred ccCHHHHHHHHHH-cCCcEEEEccCCHHHHHHHHHHHHHCC----C-c-ccceEEEEE-EECcc------------hhhc
Confidence 3344444444332 388888888777777777888876541 1 0 000443322 22321 1100
Q ss_pred CCCCCCCceeccCC-CHHHHHHHHHhcCCcEEEEEEccc---cC-CCCcccCChhHHHHHHHHHHh-cCCEEEEec
Q 017259 100 FGPLLPGHLKVDFG-DITALEKIFKESGDQIAGFLFEPI---QG-EAGVIIPPDGYLKAVRDLCSK-YNILMIADE 169 (374)
Q Consensus 100 ~~~~~~~~~~~~~~-d~~~le~~l~~~~~~~~~vi~~~~---~~-~~g~~~~~~~~l~~l~~l~~~-~~i~li~De 169 (374)
+ .-. +++.|++.+..+.+++.+| -|.. +. .........+.+++..++|++ ++.+|++=.
T Consensus 111 ~----------~~~~~l~~L~~l~~~~~~~vvAI-GEiGLD~~~~~~~~~~~Q~~~F~~ql~lA~e~~~lPviiH~ 175 (325)
T 3ipw_A 111 L----------KQEGYLDELLLLCEKNIDKVVAI-GEIGLDYERLQFSDKETQLSGYRTLSILHQKYPYLPFFFHC 175 (325)
T ss_dssp G----------GSTTHHHHHHHHHHHTGGGEEEE-EEEEEETTCCSSSCHHHHHHHHHHTHHHHHHCTTCCEEEEE
T ss_pred C----------CchHHHHHHHHHHhcCCCCEEEE-EeeecCCCcCCCCCHHHHHHHHHHHHHHHHHhhCCeEEEEe
Confidence 0 001 4678888776532344333 3332 11 111111245678899999999 999998753
No 281
>3rcm_A TATD family hydrolase; HET: CIT; 2.05A {Pseudomonas putida}
Probab=29.93 E-value=2.6e+02 Score=23.81 Aligned_cols=113 Identities=16% Similarity=0.161 Sum_probs=58.2
Q ss_pred cHHHHHHHHhcccCCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccCCccccccCC
Q 017259 22 KFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFG 101 (374)
Q Consensus 22 ~~~~l~~~l~~~~~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~ 101 (374)
..+++.++..+ .|.+.++.++..-+....++.++..+- ..| ..|...- +.|.. ....+
T Consensus 18 d~~~vl~~a~~-~gV~~~v~~g~~~~~~~~~~~la~~~~--~~~-----~~v~~~~-GiHP~------------~~~~~- 75 (287)
T 3rcm_A 18 QQAAIVERALE-AGVTQMLLTGTSLAVSEQALELCQQLD--ASG-----AHLFATA-GVHPH------------DAKAW- 75 (287)
T ss_dssp CHHHHHHHHHH-TTEEEEEECCCSHHHHHHHHHHHHHHC--TTS-----SSEEEEE-CCCGG------------GGGGC-
T ss_pred CHHHHHHHHHH-cCCeEEEEecCCHHHHHHHHHHHHhCC--CCC-----ceEEEEE-EECcC------------ccccC-
Confidence 34444444333 377888877777677777777776431 001 1233221 22221 11000
Q ss_pred CCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEcc---ccCCCCcccCChhHHHHHHHHHHhcCCEEEEe
Q 017259 102 PLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEP---IQGEAGVIIPPDGYLKAVRDLCSKYNILMIAD 168 (374)
Q Consensus 102 ~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~---~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~D 168 (374)
.-.+++.|++.++. +++.+| -|. ............+.+++..++|+++|.+|++=
T Consensus 76 ---------~~~~~~~l~~l~~~--~~vvaI-GEiGLD~~~~~~~~~~Q~~~F~~ql~lA~e~~lPv~iH 133 (287)
T 3rcm_A 76 ---------DTDSERQLRLLLSE--PRVRAV-GECGLDFNRDFSPRPLQEKALEAQLTLAAQLRLPVFLH 133 (287)
T ss_dssp ---------CTTHHHHHHHHHTS--TTEEEE-EEEEEETTTCSSCHHHHHHHHHHHHHHHHHHTCCEEEE
T ss_pred ---------CHHHHHHHHHHhcC--CCeEEE-EEeeeCCCcccCcHHHHHHHHHHHHHHHHHhCCCEEEE
Confidence 00246777776653 344443 222 11111111114667899999999999999874
No 282
>1m53_A Isomaltulose synthase; klebsiella SP. LX3, sucrose isomerization, isomerase; 2.20A {Klebsiella SP} SCOP: b.71.1.1 c.1.8.1
Probab=29.82 E-value=45 Score=31.93 Aligned_cols=26 Identities=12% Similarity=0.103 Sum_probs=23.7
Q ss_pred ChhHHHHHHHHHHhcCCEEEEecccc
Q 017259 147 PDGYLKAVRDLCSKYNILMIADEIQS 172 (374)
Q Consensus 147 ~~~~l~~l~~l~~~~~i~li~Dea~~ 172 (374)
+.+.+++|++-||++||.||.|-+..
T Consensus 91 t~~df~~lv~~aH~~Gi~VilD~V~N 116 (570)
T 1m53_A 91 TMEDFDSLVAEMKKRNMRLMIDVVIN 116 (570)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEEECCS
T ss_pred CHHHHHHHHHHHHHCCCEEEEEEecc
Confidence 67889999999999999999998865
No 283
>3edf_A FSPCMD, cyclomaltodextrinase; alpha-cyclodextrin complex, glycosidase, hydrolase; HET: CE6 ACX; 1.65A {Flavobacterium SP} PDB: 3edj_A* 3edk_A* 3ede_A 3edd_A* 1h3g_A
Probab=29.73 E-value=44 Score=32.20 Aligned_cols=59 Identities=14% Similarity=0.084 Sum_probs=40.5
Q ss_pred CHHHHHHHHHhcC-CcEEEEEEccccCCC-------C----------cccCChhHHHHHHHHHHhcCCEEEEecccc
Q 017259 114 DITALEKIFKESG-DQIAGFLFEPIQGEA-------G----------VIIPPDGYLKAVRDLCSKYNILMIADEIQS 172 (374)
Q Consensus 114 d~~~le~~l~~~~-~~~~~vi~~~~~~~~-------g----------~~~~~~~~l~~l~~l~~~~~i~li~Dea~~ 172 (374)
|+..+.+.|..-. =.+.+|.++|+..+. | ...-+.+.+++|++-||++|+.||.|-+.-
T Consensus 146 dl~gi~~~Ldyl~~LGv~aI~l~Pi~~~~~~~~~~~GY~~~dy~~idp~~Gt~~df~~Lv~~aH~~Gi~VilD~V~N 222 (601)
T 3edf_A 146 DIRGTIDHLDYIAGLGFTQLWPTPLVENDAAAYSYHGYAATDHYRIDPRYGSNEDFVRLSTEARKRGMGLIQDVVLS 222 (601)
T ss_dssp CHHHHHHTHHHHHHTTCCEEEESCCEECCCSSSGGGCCSCSEEEEECTTTCCHHHHHHHHHHHHHTTCEEEEEECCS
T ss_pred CHHHHHHHHHHHHHcCCCEEEECccccCCCCCCCCCCcCccccccccccCCCHHHHHHHHHHHHHcCCEEEEEECCc
Confidence 6666666655211 146788888864321 0 012367889999999999999999998864
No 284
>1iv0_A Hypothetical protein; rnaseh-like, YQGF, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Thermus thermophilus} SCOP: c.55.3.8
Probab=29.69 E-value=89 Score=21.87 Aligned_cols=57 Identities=14% Similarity=0.053 Sum_probs=28.4
Q ss_pred CHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCE-EEEecccc
Q 017259 114 DITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNIL-MIADEIQS 172 (374)
Q Consensus 114 d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~-li~Dea~~ 172 (374)
+.+.|++.++++. -...|+-.|. +..|..-+.....++.++..++.+++ ..+||-++
T Consensus 39 ~~~~l~~li~e~~-v~~iVvGlP~-~mdGt~~~~~~~~~~f~~~L~~~~lpV~~~DERlT 96 (98)
T 1iv0_A 39 DVEALLDFVRREG-LGKLVVGLPL-RTDLKESAQAGKVLPLVEALRARGVEVELWDERFT 96 (98)
T ss_dssp HHHHHHHHHHHHT-CCEEEEECCC-CCCSSSCCCSSTTHHHHHHHHHTTCEEEEECCSCC
T ss_pred HHHHHHHHHHHcC-CCEEEEeecc-CCCCCcCHHHHHHHHHHHHHhcCCCCEEEECCCCC
Confidence 4677888888762 2334444443 33343333333333333333222765 45777654
No 285
>3pzt_A Endoglucanase; alpha/beta barrel, glycosyl hydrolase, cellulose binding, HY; 1.97A {Bacillus subtilis subsp} PDB: 3pzu_A 3pzv_A
Probab=29.47 E-value=33 Score=30.12 Aligned_cols=53 Identities=15% Similarity=0.223 Sum_probs=32.8
Q ss_pred CHHHHHHHHHhcC-CcEEEEEEccccCCCCcccC--ChhHHHHHHHHHHhcCCEEEEec
Q 017259 114 DITALEKIFKESG-DQIAGFLFEPIQGEAGVIIP--PDGYLKAVRDLCSKYNILMIADE 169 (374)
Q Consensus 114 d~~~le~~l~~~~-~~~~~vi~~~~~~~~g~~~~--~~~~l~~l~~l~~~~~i~li~De 169 (374)
+.++++...++.+ +.+|+-+-.. .+|.... ....++++++.|+++|+.+|+|-
T Consensus 70 ~~~~~~~l~~~~G~N~VRi~~~~~---~~~~~~~~~~~~~ld~~v~~a~~~Gi~VilD~ 125 (327)
T 3pzt_A 70 NKDSLKWLRDDWGITVFRAAMYTA---DGGYIDNPSVKNKVKEAVEAAKELGIYVIIDW 125 (327)
T ss_dssp SHHHHHHHHHHTCCSEEEEEEESS---TTSTTTCGGGHHHHHHHHHHHHHHTCEEEEEE
T ss_pred CHHHHHHHHHhcCCCEEEEEeEEC---CCCcccCHHHHHHHHHHHHHHHHCCCEEEEEe
Confidence 4566666445433 4566655321 1122211 24668999999999999999984
No 286
>1uok_A Oligo-1,6-glucosidase; sugar degradation, hydrolase, TIM-barrel glycosidase; 2.00A {Bacillus cereus} SCOP: b.71.1.1 c.1.8.1
Probab=29.21 E-value=47 Score=31.69 Aligned_cols=26 Identities=8% Similarity=0.028 Sum_probs=23.5
Q ss_pred ChhHHHHHHHHHHhcCCEEEEecccc
Q 017259 147 PDGYLKAVRDLCSKYNILMIADEIQS 172 (374)
Q Consensus 147 ~~~~l~~l~~l~~~~~i~li~Dea~~ 172 (374)
+.+.+++|++-||++|+.||.|-+..
T Consensus 77 t~~df~~lv~~~h~~Gi~VilD~V~N 102 (558)
T 1uok_A 77 TMEDWDELLHEMHERNMKLMMDLVVN 102 (558)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEEECCS
T ss_pred CHHHHHHHHHHHHHCCCEEEEEEecc
Confidence 67889999999999999999998864
No 287
>1uta_A FTSN, MSGA, cell division protein FTSN; bacterial cell division protein, RNP domain, transmembrane, inner membrane, repeat; NMR {Escherichia coli} SCOP: d.58.52.1
Probab=29.19 E-value=61 Score=21.54 Aligned_cols=46 Identities=9% Similarity=-0.018 Sum_probs=35.1
Q ss_pred hhHHHHHHHHHHCCeE--eccCCCCEEEEecCCCCCHHHHHHHHHHHHH
Q 017259 297 VSAYDICLKMKERGIL--AKPTHDTIVRLTPPLSISSNELQEGSKALHD 343 (374)
Q Consensus 297 ~~~~~~~~~l~~~Gi~--v~~~~~~~lRi~~~~~~~~e~i~~~~~~l~~ 343 (374)
.+++.+.+.|...|+- +.. ...+.|+.++...+.++.+.+.+.|++
T Consensus 21 ~~A~~l~~~L~~~G~~a~i~~-~~~~yRV~vGpf~s~~~A~~~~~~L~~ 68 (81)
T 1uta_A 21 EQAETVRAQLAFEGFDSKITT-NNGWNRVVIGPVKGKENADSTLNRLKM 68 (81)
T ss_dssp HHHHHHHHHHHHHTCCEEEEE-CSSSEEEEESSCBTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCeEEEe-CCcEEEEEECCcCCHHHHHHHHHHHHH
Confidence 3788899999888753 333 356778887777788899999998886
No 288
>1zja_A Trehalulose synthase; sucrose isomerase, alpha-amylase family, (beta/alpha)8 barrel; 1.60A {Pseudomonas mesoacidophila} PDB: 1zjb_A 2pwd_A* 2pwh_A 2pwg_A 2pwe_A* 2pwf_A* 3gbe_A* 3gbd_A*
Probab=28.97 E-value=47 Score=31.64 Aligned_cols=26 Identities=8% Similarity=0.046 Sum_probs=23.6
Q ss_pred ChhHHHHHHHHHHhcCCEEEEecccc
Q 017259 147 PDGYLKAVRDLCSKYNILMIADEIQS 172 (374)
Q Consensus 147 ~~~~l~~l~~l~~~~~i~li~Dea~~ 172 (374)
+.+.+++|++-||++|+.||.|-++.
T Consensus 78 t~~df~~Lv~~aH~~Gi~VilD~V~N 103 (557)
T 1zja_A 78 TMEDFDRLMAELKKRGMRLMVDVVIN 103 (557)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEEECCS
T ss_pred CHHHHHHHHHHHHHCCCEEEEEEecc
Confidence 67889999999999999999998864
No 289
>3b1s_B Flagellar biosynthetic protein FLHB; type III secretion system, protein transport, MEMB protein; 2.55A {Aquifex aeolicus}
Probab=34.83 E-value=12 Score=25.89 Aligned_cols=22 Identities=9% Similarity=0.294 Sum_probs=19.5
Q ss_pred HHHHHHHHHhcCCEEEEecccc
Q 017259 151 LKAVRDLCSKYNILMIADEIQS 172 (374)
Q Consensus 151 l~~l~~l~~~~~i~li~Dea~~ 172 (374)
-++|.+++++||++++.|....
T Consensus 29 A~~I~e~A~e~~VPi~e~~~LA 50 (87)
T 3b1s_B 29 AQKIVEIAENYSIPVVRKPELA 50 (87)
Confidence 6789999999999999997655
No 290
>2i5o_A DNA polymerase ETA; zinc finger, DNA polymerase,POL ETA, UBZ, ubiquitin-binding zinc finger, translesion synthesis, ubiquitin-binding domain; HET: DNA; NMR {Homo sapiens}
Probab=28.49 E-value=11 Score=21.67 Aligned_cols=14 Identities=29% Similarity=0.897 Sum_probs=10.4
Q ss_pred CCCCCCCccccccC
Q 017259 359 DAPATPCHRCGRNL 372 (374)
Q Consensus 359 ~~~~~~~~~~~~~~ 372 (374)
..+...|.+||+.+
T Consensus 6 ~~~~~~C~~C~~~i 19 (39)
T 2i5o_A 6 AEDQVPCEKCGSLV 19 (39)
T ss_dssp CCCEEECTTTCCEE
T ss_pred cCCCcccccccCcC
Confidence 44566899999864
No 291
>1cyg_A Cyclodextrin glucanotransferase; glycosyltransferase; 2.50A {Geobacillus stearothermophilus} SCOP: b.1.18.2 b.3.1.1 b.71.1.1 c.1.8.1
Probab=28.43 E-value=48 Score=32.55 Aligned_cols=60 Identities=13% Similarity=0.112 Sum_probs=42.0
Q ss_pred CCHHHHHHHHH--hcCC-cEEEEEEccccCC--------------CC----------cccCChhHHHHHHHHHHhcCCEE
Q 017259 113 GDITALEKIFK--ESGD-QIAGFLFEPIQGE--------------AG----------VIIPPDGYLKAVRDLCSKYNILM 165 (374)
Q Consensus 113 ~d~~~le~~l~--~~~~-~~~~vi~~~~~~~--------------~g----------~~~~~~~~l~~l~~l~~~~~i~l 165 (374)
.|+..+.+.|. .-.+ .+.+|.++|+..+ .| ...-+.+.+++|++-||++||.|
T Consensus 49 Gdl~gi~~kLd~~yLk~LGv~aIwL~Pi~~~~~~~~~~~~g~~~~~GY~~~Dy~~idp~~Gt~~df~~Lv~~aH~~GIkV 128 (680)
T 1cyg_A 49 GDWQGIINKINDGYLTDMGVTAIWISQPVENVFSVMNDASGSASYHGYWARDFKKPNPFFGTLSDFQRLVDAAHAKGIKV 128 (680)
T ss_dssp CCHHHHHHHHHTSTTTTTTCCEEEECCCEEECCCCCSSSSCCCSTTSCSEEEEEEECTTTCCHHHHHHHHHHHHHTTCEE
T ss_pred cCHHHHHhhcCHHHHHhCCCCEEEeCccccCccccccccCCCCCCCCcCchhccccCcccCCHHHHHHHHHHHHHCCCEE
Confidence 37888877777 4322 3677888875321 00 11236888999999999999999
Q ss_pred EEecccc
Q 017259 166 IADEIQS 172 (374)
Q Consensus 166 i~Dea~~ 172 (374)
|+|-+.-
T Consensus 129 ilD~V~N 135 (680)
T 1cyg_A 129 IIDFAPN 135 (680)
T ss_dssp EEEECTT
T ss_pred EEEeCCC
Confidence 9998754
No 292
>7a3h_A Endoglucanase; hydrolase, cellulose degradation, glycoside H family 5, michaelis complex, SKEW-BOAT, distortion; 0.95A {Bacillus agaradhaerens} SCOP: c.1.8.3 PDB: 1h2j_A* 1hf6_A* 1ocq_A* 1w3k_A* 1h11_A* 4a3h_A* 5a3h_A* 6a3h_A* 1w3l_A 8a3h_A* 2v38_A* 1qhz_A 1qi0_A* 1e5j_A* 1qi2_A* 1h5v_A* 1a3h_A 2a3h_A* 3a3h_A* 1lf1_A
Probab=28.43 E-value=36 Score=29.43 Aligned_cols=54 Identities=13% Similarity=0.194 Sum_probs=32.3
Q ss_pred CHHHHHHHHHhcC-CcEEEEEEccccCCCCcccC--ChhHHHHHHHHHHhcCCEEEEecc
Q 017259 114 DITALEKIFKESG-DQIAGFLFEPIQGEAGVIIP--PDGYLKAVRDLCSKYNILMIADEI 170 (374)
Q Consensus 114 d~~~le~~l~~~~-~~~~~vi~~~~~~~~g~~~~--~~~~l~~l~~l~~~~~i~li~Dea 170 (374)
+.++++...++.+ +.+|+-+-.. .+|.... -.+.++++++.|.++|+.+|+|--
T Consensus 45 ~~~~~~~l~~~~G~N~VRip~~~~---~~~~~~~~~~~~~ld~~v~~a~~~Gi~Vild~H 101 (303)
T 7a3h_A 45 NYESMKWLRDDWGINVFRAAMYTS---SGGYIDDPSVKEKVKEAVEAAIDLDIYVIIDWH 101 (303)
T ss_dssp SHHHHHHHHHHTCCCEEEEEEESS---TTSTTTCTTHHHHHHHHHHHHHHHTCEEEEEEE
T ss_pred CHHHHHHHHHhcCCCEEEEEEEeC---CCCccCCHHHHHHHHHHHHHHHHCCCEEEEEec
Confidence 3456654433433 4567665421 1121111 246688999999999999999853
No 293
>2f2e_A PA1607; transcription factor, helix-TRUN-helix, APC5613, structural genomics, PSI, protein structure initiative; HET: GLC; 1.85A {Pseudomonas aeruginosa} SCOP: a.4.5.69
Probab=28.03 E-value=1.5e+02 Score=22.17 Aligned_cols=71 Identities=11% Similarity=-0.006 Sum_probs=37.0
Q ss_pred hHHHHHHHHHHCCeEeccCC-CC-EEEEecCCCCCH--HHHHHHHHHHHHHHhccCC-cCCC-------CCCCCC--CCC
Q 017259 298 SAYDICLKMKERGILAKPTH-DT-IVRLTPPLSISS--NELQEGSKALHDVLELDLP-KMRK-------PKPADA--PAT 363 (374)
Q Consensus 298 ~~~~~~~~l~~~Gi~v~~~~-~~-~lRi~~~~~~~~--e~i~~~~~~l~~~~~~~~~-~~~~-------~~~~~~--~~~ 363 (374)
......+.|.++|++.+... .+ ...+. .|+ .++...+..+.++.+ +.. .... ..++.+ |..
T Consensus 53 tls~~L~~Le~~GlI~r~~~~~d~~~~y~----LT~~G~~l~~~l~~l~~w~~-~~~~~~~~~~~~~~~~~~g~~~~~~~ 127 (146)
T 2f2e_A 53 ILAARLRNLVEHGVMVAVPAESGSHQEYR----LTDKGRALFPLLVAIRQWGE-DYFFAPDESHVRLVERDSGQPVPRLQ 127 (146)
T ss_dssp HHHHHHHHHHHTTSEEEEECSSSSCEEEE----ECHHHHTTHHHHHHHHHHHH-HHSSCTTCCCCEEEETTTCCBCCCCC
T ss_pred HHHHHHHHHHHCCCEEEEecCCCCeEEEE----ECchHHHHHHHHHHHHHHHH-HhhccccCCcceeeeCCCCCCCCceE
Confidence 45667778889999886532 11 22222 333 233344444544444 321 1111 222222 567
Q ss_pred CCccccccCC
Q 017259 364 PCHRCGRNLY 373 (374)
Q Consensus 364 ~~~~~~~~~~ 373 (374)
.|..||+.+.
T Consensus 128 ~~~~~g~~~~ 137 (146)
T 2f2e_A 128 VRAGDGSPLA 137 (146)
T ss_dssp CBCTTSCBCC
T ss_pred EECCCcCCCC
Confidence 8999998764
No 294
>2zic_A Dextran glucosidase; TIM barrel, (beta/alpha)8-barrel, hydrolase; 2.20A {Streptococcus mutans} PDB: 2zid_A*
Probab=27.84 E-value=50 Score=31.35 Aligned_cols=26 Identities=12% Similarity=0.063 Sum_probs=23.1
Q ss_pred ChhHHHHHHHHHHhcCCEEEEecccc
Q 017259 147 PDGYLKAVRDLCSKYNILMIADEIQS 172 (374)
Q Consensus 147 ~~~~l~~l~~l~~~~~i~li~Dea~~ 172 (374)
+.+.+++|++-||++||.||.|-+..
T Consensus 77 t~~df~~lv~~~h~~Gi~VilD~V~N 102 (543)
T 2zic_A 77 NMADMDNLLTQAKMRGIKIIMDLVVN 102 (543)
T ss_dssp CHHHHHHHHHHHHTTTCEEEEEECCS
T ss_pred CHHHHHHHHHHHHHCCCEEEEEEecC
Confidence 67789999999999999999998864
No 295
>2jug_A TUBC protein; docking domain, dimer, nonribosomal peptide synthetase, tubulysin, ligase, phosphopantetheine, biosynthetic protein; NMR {Angiococcus disciformis}
Probab=27.80 E-value=98 Score=20.44 Aligned_cols=40 Identities=13% Similarity=0.061 Sum_probs=27.5
Q ss_pred hHHHHHHHHHHCCeEeccCCCCEEEEecCC-CCCHHHHHHHH
Q 017259 298 SAYDICLKMKERGILAKPTHDTIVRLTPPL-SISSNELQEGS 338 (374)
Q Consensus 298 ~~~~~~~~l~~~Gi~v~~~~~~~lRi~~~~-~~~~e~i~~~~ 338 (374)
+..++...|.++||.+..- ++-+|+.-+- ..+++-...+-
T Consensus 6 ~~~~ll~~l~~~gi~l~~e-g~kLr~~ap~g~l~~~l~~~l~ 46 (78)
T 2jug_A 6 SAGALLAHAASLGVRLWVE-GERLRFQAPPGVMTPELQSRLG 46 (78)
T ss_dssp SHHHHHHHHHHHTCEEEEE-TTEEEEECCTTTTCHHHHHHHT
T ss_pred cHHHHHHHHHHcCCEEEEE-CCEeeeecCccccCHHHHHHHH
Confidence 5678899999999998865 5678886443 55654444433
No 296
>3kts_A Glycerol uptake operon antiterminator regulatory; structural genomics, PSI-2, protein structur initiative; HET: UNL; 2.75A {Listeria monocytogenes str}
Probab=27.71 E-value=68 Score=25.78 Aligned_cols=42 Identities=14% Similarity=0.166 Sum_probs=30.2
Q ss_pred CHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEE
Q 017259 114 DITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIA 167 (374)
Q Consensus 114 d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~ 167 (374)
+.++|+++++. ....+++.. |.+.. ++++.+.+++++-.+++
T Consensus 18 ~~~~l~~al~s---~~~~ifll~-----g~i~~----l~~~v~~lk~~~K~v~V 59 (192)
T 3kts_A 18 NQKDMEKILEL---DLTYMVMLE-----THVAQ----LKALVKYAQAGGKKVLL 59 (192)
T ss_dssp SSHHHHHHTTS---SCCEEEECS-----EETTT----HHHHHHHHHHTTCEEEE
T ss_pred CHHHHHHHHcC---CCCEEEEec-----CcHHH----HHHHHHHHHHcCCeEEE
Confidence 78999999873 334444433 23444 99999999999877666
No 297
>1wzl_A Alpha-amylase II; pullulan, GH-13, alpha-amylase family, hydrolase; 2.00A {Thermoactinomyces vulgaris} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 1ji2_A 1bvz_A 1vfk_A* 3a6o_A* 1wzm_A 1jf6_A 1wzk_A 2d2o_A* 1jib_A* 1jl8_A* 1vb9_A* 1g1y_A* 1vfo_A* 1vfm_A* 1vfu_A* 1jf5_A
Probab=27.56 E-value=41 Score=32.29 Aligned_cols=59 Identities=14% Similarity=0.151 Sum_probs=38.3
Q ss_pred CHHHHHHHHHhcC-CcEEEEEEccccCCC---C----------cccCChhHHHHHHHHHHhcCCEEEEecccc
Q 017259 114 DITALEKIFKESG-DQIAGFLFEPIQGEA---G----------VIIPPDGYLKAVRDLCSKYNILMIADEIQS 172 (374)
Q Consensus 114 d~~~le~~l~~~~-~~~~~vi~~~~~~~~---g----------~~~~~~~~l~~l~~l~~~~~i~li~Dea~~ 172 (374)
|+..+.+.|..-. =.+.+|.++|+.... | ...-+.+.++++++-||++||.||.|-++.
T Consensus 171 ~~~gi~~~LdyLk~LGvt~I~L~Pi~~~~~~~GYd~~dy~~id~~~Gt~~dfk~lv~~~H~~Gi~VilD~V~N 243 (585)
T 1wzl_A 171 DLKGVIDRLPYLEELGVTALYFTPIFASPSHHKYDTADYLAIDPQFGDLPTFRRLVDEAHRRGIKIILDAVFN 243 (585)
T ss_dssp CHHHHHHTHHHHHHHTCCEEEECCCEECSSSSCCSCSEEEEECTTTCCHHHHHHHHHHHHTTTCEEEEEECCS
T ss_pred CHHHHHHHhHHHHHcCCCEEEECCcccCCCCCCcCcccccccCcccCCHHHHHHHHHHHHHCCCEEEEEEcCC
Confidence 5665555444210 135677777753211 1 112367889999999999999999998765
No 298
>1tvn_A Cellulase, endoglucanase G; glycoside hydrolase, CLAN GH-A, family 5-2; 1.41A {Pseudoalteromonas haloplanktis} SCOP: c.1.8.3 PDB: 1tvp_A*
Probab=27.55 E-value=41 Score=28.76 Aligned_cols=22 Identities=18% Similarity=0.151 Sum_probs=19.1
Q ss_pred hHHHHHHHHHHhcCCEEEEecc
Q 017259 149 GYLKAVRDLCSKYNILMIADEI 170 (374)
Q Consensus 149 ~~l~~l~~l~~~~~i~li~Dea 170 (374)
+.++++.+.|.++|+.+|+|--
T Consensus 79 ~~ld~~v~~a~~~Gi~vild~h 100 (293)
T 1tvn_A 79 SRLDTVVNAAIAEDMYVIIDFH 100 (293)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEE
T ss_pred HHHHHHHHHHHHCCCEEEEEcC
Confidence 5688899999999999999853
No 299
>3vup_A Beta-1,4-mannanase; TIM barrel, digestive fluid, HYD; 1.05A {Aplysia kurodai}
Probab=27.34 E-value=41 Score=28.90 Aligned_cols=22 Identities=32% Similarity=0.372 Sum_probs=18.7
Q ss_pred hHHHHHHHHHHhcCCEEEEecc
Q 017259 149 GYLKAVRDLCSKYNILMIADEI 170 (374)
Q Consensus 149 ~~l~~l~~l~~~~~i~li~Dea 170 (374)
..++++.++|+++|+.||.|--
T Consensus 90 ~~~d~~~~~a~~~Gi~vil~~~ 111 (351)
T 3vup_A 90 DDMKDLLDTAKKYNILVFPCLW 111 (351)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEE
T ss_pred HHHHHHHHHHHHCCCeEEEEec
Confidence 3478999999999999998853
No 300
>2whl_A Beta-mannanase, baman5; glycoside hydrolase, hydrolase; HET: MAN BMA; 1.40A {Bacillus agaradhaerens} PDB: 2whj_A
Probab=27.29 E-value=41 Score=28.82 Aligned_cols=23 Identities=9% Similarity=0.235 Sum_probs=20.5
Q ss_pred ChhHHHHHHHHHHhcCCEEEEec
Q 017259 147 PDGYLKAVRDLCSKYNILMIADE 169 (374)
Q Consensus 147 ~~~~l~~l~~l~~~~~i~li~De 169 (374)
..+.++++++.|+++|+.+|+|-
T Consensus 62 ~~~~ld~~v~~a~~~Gi~Vild~ 84 (294)
T 2whl_A 62 DIDTIREVIELAEQNKMVAVVEV 84 (294)
T ss_dssp CHHHHHHHHHHHHTTTCEEEEEE
T ss_pred HHHHHHHHHHHHHHCCCEEEEEe
Confidence 56679999999999999999984
No 301
>3bc9_A AMYB, alpha amylase, catalytic region; acarbose, thermostable, halophilic, N domain, starch binding, hydrolase; HET: G6D GLC ACI BGC ACR; 1.35A {Halothermothrix orenii} PDB: 3bcd_A* 3bcf_A
Probab=27.27 E-value=43 Score=32.31 Aligned_cols=27 Identities=19% Similarity=0.206 Sum_probs=24.2
Q ss_pred CChhHHHHHHHHHHhcCCEEEEecccc
Q 017259 146 PPDGYLKAVRDLCSKYNILMIADEIQS 172 (374)
Q Consensus 146 ~~~~~l~~l~~l~~~~~i~li~Dea~~ 172 (374)
-+.+.++++++-||++|+.||.|-+.-
T Consensus 206 Gt~~dfk~Lv~~aH~~GI~VilD~V~N 232 (599)
T 3bc9_A 206 GTKGELENAIDALHNNDIKVYFDAVLN 232 (599)
T ss_dssp BCHHHHHHHHHHHHHTTCEEEEEECCS
T ss_pred CCHHHHHHHHHHHHHCCCEEEEEECcC
Confidence 367899999999999999999998864
No 302
>3iz5_f 60S ribosomal protein L30 (L30E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_f
Probab=27.26 E-value=1.1e+02 Score=22.09 Aligned_cols=44 Identities=7% Similarity=-0.076 Sum_probs=30.8
Q ss_pred HHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEe
Q 017259 115 ITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIAD 168 (374)
Q Consensus 115 ~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~D 168 (374)
.+...++|++ .+.+.+++.... ++...+.|..+|..++++++.-
T Consensus 31 ~~~t~kai~~--gkakLVilA~D~--------~~~~~~~i~~~c~~~~ipv~~~ 74 (112)
T 3iz5_f 31 YKTVLKTLRS--SLGKLIILANNC--------PPLRKSEIETYAMLAKISVHHF 74 (112)
T ss_dssp HHHHHHHHHT--TCCSEEEECSCC--------CHHHHHHHHHHHHHTTCCEECC
T ss_pred HHHHHHHHHc--CCceEEEEeCCC--------CHHHHHHHHHHHHHcCCcEEEe
Confidence 4555666764 356666665443 4566899999999999999853
No 303
>1j0h_A Neopullulanase; beta-alpha-barrels, hydrolase; 1.90A {Geobacillus stearothermophilus} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 1j0i_A* 1j0j_A* 1j0k_A* 1sma_A 1gvi_A*
Probab=27.13 E-value=43 Score=32.16 Aligned_cols=59 Identities=19% Similarity=0.234 Sum_probs=38.4
Q ss_pred CHHHHHHHHHhcC-CcEEEEEEccccCCC---C----------cccCChhHHHHHHHHHHhcCCEEEEecccc
Q 017259 114 DITALEKIFKESG-DQIAGFLFEPIQGEA---G----------VIIPPDGYLKAVRDLCSKYNILMIADEIQS 172 (374)
Q Consensus 114 d~~~le~~l~~~~-~~~~~vi~~~~~~~~---g----------~~~~~~~~l~~l~~l~~~~~i~li~Dea~~ 172 (374)
|+..+.+.|..-. =.+.+|.++|+.... | ...-+.+.++++++-||++||.||.|-++.
T Consensus 174 ~~~gi~~~LdyLk~LGvt~I~L~Pi~~~~~~~GYd~~dy~~idp~~Gt~~df~~lv~~~H~~Gi~VilD~V~N 246 (588)
T 1j0h_A 174 DLQGIIDHLDYLVDLGITGIYLTPIFRSPSNHKYDTADYFEVDPHFGDKETLKTLIDRCHEKGIRVMLDAVFN 246 (588)
T ss_dssp CHHHHHHTHHHHHHHTCCEEEECCCEECSSSSCCSCSEEEEECTTTCCHHHHHHHHHHHHHTTCEEEEEECCS
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCcCccccCccCccCCCHHHHHHHHHHHHHCCCEEEEEECcC
Confidence 6665555444210 135677777753211 1 112257889999999999999999998865
No 304
>3kfu_G Glutamyl-tRNA(Gln) amidotransferase subunit C; ASPRS, gatcab, ATP-binding, aminoacyl-tRNA synthetase, ligas nucleotide-binding, protein biosynthesis, ligase-RNA comple; HET: H2U 5MU PSU; 3.00A {Thermus thermophilus}
Probab=26.94 E-value=76 Score=21.96 Aligned_cols=34 Identities=15% Similarity=0.148 Sum_probs=28.3
Q ss_pred CCCHHHHHHHHHHHHHHHhccCCcCCCCCCCCCCC
Q 017259 328 SISSNELQEGSKALHDVLELDLPKMRKPKPADAPA 362 (374)
Q Consensus 328 ~~~~e~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 362 (374)
..++++++.+...|..++. .+..+...+..+.+|
T Consensus 21 ~l~eeE~~~~~~~l~~Il~-~ve~L~evDt~~VeP 54 (92)
T 3kfu_G 21 RLSPEEEALLLQDLKRILD-FVDALPRVEEGGAEE 54 (92)
T ss_dssp CCCHHHHHHHHHHHHHHHH-HHHTCCCCCCCCCCC
T ss_pred CCCHHHHHHHHHHHHHHHH-HHHHHHhcCCCCCCC
Confidence 4789999999999999998 887888777766655
No 305
>4aee_A Alpha amylase, catalytic region; hydrolase, hyperthermostable, cyclodextrin hydrolase, GH13; 2.28A {Staphylothermus marinus}
Probab=26.77 E-value=53 Score=32.34 Aligned_cols=59 Identities=10% Similarity=0.123 Sum_probs=39.3
Q ss_pred CHHHHHHHHHhcC-CcEEEEEEccccCCCC-------------cccCChhHHHHHHHHHHhcCCEEEEecccc
Q 017259 114 DITALEKIFKESG-DQIAGFLFEPIQGEAG-------------VIIPPDGYLKAVRDLCSKYNILMIADEIQS 172 (374)
Q Consensus 114 d~~~le~~l~~~~-~~~~~vi~~~~~~~~g-------------~~~~~~~~l~~l~~l~~~~~i~li~Dea~~ 172 (374)
|+..+.+.|..-. =.+.+|.++|+..+.+ ...-+.+.+++|++-||++||.||.|-+..
T Consensus 263 dl~Gi~~kLdyLk~LGvt~IwL~Pi~~s~~~~GYd~~Dy~~idp~~Gt~~df~~Lv~~aH~~GikVilD~V~N 335 (696)
T 4aee_A 263 DLAGIMKHIDHLEDLGVETIYLTPIFSSTSYHRYDTIDYKSIDKYLGTMEDFEKLVQVLHSRKIKIVLDITMH 335 (696)
T ss_dssp CHHHHHTTHHHHHHHTCCEEEECCCEEESSSSCCSEEEEEEECGGGCCHHHHHHHHHHHHHTTCEEEEEECSS
T ss_pred CHHHHHHHhHHHHHcCCCEEEECCcccCCCCCCcCcccccccCcccCCHHHHHHHHHHHHHCCCEEEEecccc
Confidence 5666555544211 1366788887543221 112367889999999999999999998854
No 306
>1bqc_A Protein (beta-mannanase); glycosyl hydrolase, family 5, thermomonospora fusca; 1.50A {Thermobifida fusca} SCOP: c.1.8.3 PDB: 2man_A* 3man_A*
Probab=26.66 E-value=44 Score=28.76 Aligned_cols=23 Identities=13% Similarity=0.301 Sum_probs=20.5
Q ss_pred ChhHHHHHHHHHHhcCCEEEEec
Q 017259 147 PDGYLKAVRDLCSKYNILMIADE 169 (374)
Q Consensus 147 ~~~~l~~l~~l~~~~~i~li~De 169 (374)
+.+.++++++.|+++|+.+|+|-
T Consensus 63 ~~~~ld~~v~~a~~~Gi~Vild~ 85 (302)
T 1bqc_A 63 GPSDVANVISLCKQNRLICMLEV 85 (302)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEEE
T ss_pred CHHHHHHHHHHHHHCCCEEEEEe
Confidence 45779999999999999999993
No 307
>2ki0_A DS119; beta-alpha-beta, de novo protein; NMR {Synthetic}
Probab=26.65 E-value=40 Score=17.81 Aligned_cols=19 Identities=26% Similarity=0.281 Sum_probs=16.3
Q ss_pred ChhHHHHHHHHHHhcCCEE
Q 017259 147 PDGYLKAVRDLCSKYNILM 165 (374)
Q Consensus 147 ~~~~l~~l~~l~~~~~i~l 165 (374)
+++++++|.+-+++.+|.+
T Consensus 13 tpeelkklkeeakkanirv 31 (36)
T 2ki0_A 13 TPEELKKLKEEAKKANIRV 31 (36)
T ss_dssp CHHHHHHHHHHHHHHCCCC
T ss_pred CHHHHHHHHHHHHhccEEE
Confidence 7889999999999988754
No 308
>4aef_A Neopullulanase (alpha-amylase II); hydrolase, thermostability, high temperature; 2.34A {Pyrococcus furiosus}
Probab=26.58 E-value=45 Score=32.50 Aligned_cols=59 Identities=14% Similarity=0.169 Sum_probs=38.7
Q ss_pred CHHHHHHHHHhcC-CcEEEEEEccccCCCC-------------cccCChhHHHHHHHHHHhcCCEEEEecccc
Q 017259 114 DITALEKIFKESG-DQIAGFLFEPIQGEAG-------------VIIPPDGYLKAVRDLCSKYNILMIADEIQS 172 (374)
Q Consensus 114 d~~~le~~l~~~~-~~~~~vi~~~~~~~~g-------------~~~~~~~~l~~l~~l~~~~~i~li~Dea~~ 172 (374)
|+..+.+.|.--. =-+.+|.++|+..+.+ ...-+.+.+++|++-||++||.||.|-++.
T Consensus 237 dl~Gi~~kLdYLk~LGvt~I~L~Pif~s~~~~GYd~~dy~~idp~~Gt~~df~~LV~~aH~~GI~VIlD~V~N 309 (645)
T 4aef_A 237 DLIGIKEKIDHLVNLGINAIYLTPIFSSLTYHGYDIVDYFHVARRLGGDRAFVDLLSELKRFDIKVILDGVFH 309 (645)
T ss_dssp CHHHHHHTHHHHHHHTCCEEEECCCEEESSTTCSSEEEEEEECGGGTCHHHHHHHHHHHHHTTCEEEEEECCS
T ss_pred CHHHHHHhhHHHHHcCCCEEEECCCCCCCCCCCcCccCCCccCcccCCHHHHHHHHHHhhhcCCEEEEEeccc
Confidence 5555555544210 0366788887532211 122378889999999999999999998764
No 309
>3jug_A Beta-mannanase; TIM-barrel, glycosidase, hydrolase; 1.60A {Bacillus}
Probab=26.41 E-value=43 Score=29.74 Aligned_cols=24 Identities=8% Similarity=0.181 Sum_probs=20.9
Q ss_pred ChhHHHHHHHHHHhcCCEEEEecc
Q 017259 147 PDGYLKAVRDLCSKYNILMIADEI 170 (374)
Q Consensus 147 ~~~~l~~l~~l~~~~~i~li~Dea 170 (374)
..+.++++++.|.++|+.+|+|--
T Consensus 85 ~l~~ld~~v~~a~~~GiyVIlDlH 108 (345)
T 3jug_A 85 DIDTVREVIELAEQNKMVAVVEVH 108 (345)
T ss_dssp CHHHHHHHHHHHHTTTCEEEEEEC
T ss_pred HHHHHHHHHHHHHHCCCEEEEEec
Confidence 467799999999999999999853
No 310
>2jli_A YSCU, YOP proteins translocation protein; cell membrane, transmembrane, protein transport, type III secretion system, plasmid, membrane; 1.13A {Yersinia pestis}
Probab=26.32 E-value=34 Score=25.33 Aligned_cols=22 Identities=9% Similarity=0.225 Sum_probs=19.4
Q ss_pred HHHHHHHHHhcCCEEEEecccc
Q 017259 151 LKAVRDLCSKYNILMIADEIQS 172 (374)
Q Consensus 151 l~~l~~l~~~~~i~li~Dea~~ 172 (374)
-.+|.+++++||++++.|...+
T Consensus 73 A~~I~~~A~e~~VPi~e~~~LA 94 (123)
T 2jli_A 73 VQTVRKIAEEEGVPILQRIPLA 94 (123)
T ss_dssp HHHHHHHHHHHTCCEEECHHHH
T ss_pred HHHHHHHHHHcCCCEEeCHHHH
Confidence 6889999999999999997544
No 311
>1k4i_A 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavin biosynthesi antimicrobial target, structure-based design, isomerase; 0.98A {Magnaporthe grisea} SCOP: d.115.1.2 PDB: 1k49_A 1k4l_A 1k4o_A 1k4p_A
Probab=26.29 E-value=60 Score=26.88 Aligned_cols=37 Identities=5% Similarity=0.105 Sum_probs=28.4
Q ss_pred CcEEEEEEccccCC----------CCcccCChhHHHHHHHHHHhcCCEEEE
Q 017259 127 DQIAGFLFEPIQGE----------AGVIIPPDGYLKAVRDLCSKYNILMIA 167 (374)
Q Consensus 127 ~~~~~vi~~~~~~~----------~g~~~~~~~~l~~l~~l~~~~~i~li~ 167 (374)
-.+++++++-.+-. .|.... +.++.+++++||+.+|.
T Consensus 166 l~PagVicEi~~~~~~~~~~~~~~dG~mar----~~~l~~fA~~h~L~iit 212 (233)
T 1k4i_A 166 KRPVAVISEIVDDGQEVEGRAVRAAPGMLR----GDECVAFARRWGLKVCT 212 (233)
T ss_dssp CCSBEEEEEBEECCEECTTSSCEESCEECC----HHHHHHHHHHTTCEEEE
T ss_pred CCceEEEEEeCCCcccccccccCCCCCcCC----HHHHHHHHHHcCCcEEE
Confidence 46778888765330 466665 99999999999999985
No 312
>3irs_A Uncharacterized protein BB4693; structural genomics, PSI-2, protein structure initiative, TI protein; HET: GOL; 1.76A {Bordetella bronchiseptica} PDB: 3k4w_A
Probab=26.08 E-value=1.5e+02 Score=25.21 Aligned_cols=50 Identities=16% Similarity=0.141 Sum_probs=31.1
Q ss_pred HHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEe
Q 017259 115 ITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIAD 168 (374)
Q Consensus 115 ~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~D 168 (374)
.+.|++ +.+ ...+++-+.+.....+.. .+...+..+.++|.++|++|++-
T Consensus 108 ~~eL~~-~~~--~g~~Gi~~~~~~~~~~~~-~~d~~~~~~~~~a~e~glpv~iH 157 (291)
T 3irs_A 108 MAQMQE-ILD--LGIRIVNLEPGVWATPMH-VDDRRLYPLYAFCEDNGIPVIMM 157 (291)
T ss_dssp HHHHHH-HHH--TTCCCEEECGGGSSSCCC-TTCGGGHHHHHHHHHTTCCEEEE
T ss_pred HHHHHH-HHh--CCCeEEEEeCCCCCCCCC-CCCHHHHHHHHHHHHcCCeEEEe
Confidence 456666 443 356666665433212222 24566889999999999988854
No 313
>2ze0_A Alpha-glucosidase; TIM barrel, glucoside hydrolase, extremophIle, hydrolase; 2.00A {Geobacillus SP}
Probab=26.01 E-value=47 Score=31.65 Aligned_cols=26 Identities=8% Similarity=0.070 Sum_probs=23.7
Q ss_pred ChhHHHHHHHHHHhcCCEEEEecccc
Q 017259 147 PDGYLKAVRDLCSKYNILMIADEIQS 172 (374)
Q Consensus 147 ~~~~l~~l~~l~~~~~i~li~Dea~~ 172 (374)
+.+.++++++-||++|+.||.|-+..
T Consensus 77 t~~d~~~lv~~~h~~Gi~vilD~V~N 102 (555)
T 2ze0_A 77 TMDDFDELLAQAHRRGLKVILDLVIN 102 (555)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEEEECS
T ss_pred CHHHHHHHHHHHHHCCCEEEEEEecc
Confidence 67889999999999999999998864
No 314
>3keo_A Redox-sensing transcriptional repressor REX; DNA binding protein, winged helix, rossmann fold, NAD+; HET: NAD; 1.50A {Streptococcus agalactiae serogroup iiiorganism_taxid} PDB: 3keq_A* 3ket_A*
Probab=26.01 E-value=2.1e+02 Score=23.23 Aligned_cols=47 Identities=17% Similarity=0.112 Sum_probs=29.8
Q ss_pred CHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEecccc
Q 017259 114 DITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQS 172 (374)
Q Consensus 114 d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~ 172 (374)
.++++++.++++ ++..+++..+. ...+++++.|.+.|+.-|+.=+..
T Consensus 136 ~~~dL~~~v~~~--~Id~vIIAvPs----------~~aq~v~d~lv~~GIk~I~nFap~ 182 (212)
T 3keo_A 136 GISTINDHLIDS--DIETAILTVPS----------TEAQEVADILVKAGIKGILSFSPV 182 (212)
T ss_dssp EGGGHHHHC-CC--SCCEEEECSCG----------GGHHHHHHHHHHHTCCEEEECSSS
T ss_pred CHHHHHHHHHHc--CCCEEEEecCc----------hhHHHHHHHHHHcCCCEEEEcCCc
Confidence 367778888764 33334443221 116789999999999888776544
No 315
>1qho_A Alpha-amylase; glycoside hydrolase, starch degradation; HET: MAL ABD; 1.70A {Geobacillus stearothermophilus} SCOP: b.1.18.2 b.3.1.1 b.71.1.1 c.1.8.1 PDB: 1qhp_A*
Probab=25.95 E-value=46 Score=32.67 Aligned_cols=26 Identities=12% Similarity=0.067 Sum_probs=23.6
Q ss_pred ChhHHHHHHHHHHhcCCEEEEecccc
Q 017259 147 PDGYLKAVRDLCSKYNILMIADEIQS 172 (374)
Q Consensus 147 ~~~~l~~l~~l~~~~~i~li~Dea~~ 172 (374)
+.+.+++|++-||++||.||.|-+..
T Consensus 106 t~~df~~Lv~~aH~~GikVilD~V~N 131 (686)
T 1qho_A 106 NWTTFDTLVNDAHQNGIKVIVDFVPN 131 (686)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEEECTT
T ss_pred CHHHHHHHHHHHHHCCCEEEEEeccc
Confidence 67889999999999999999998764
No 316
>3n9k_A Glucan 1,3-beta-glucosidase; aromatic entranceway/clamp, exoglucanase, glycoside hydrolas protein-carbohydrate interaction; HET: BGC; 1.70A {Candida albicans} SCOP: c.1.8.3 PDB: 2pc8_A* 2pb1_A* 2pbo_A 3o6a_A 2pf0_A 1cz1_A 1eqc_A* 1eqp_A
Probab=25.82 E-value=45 Score=30.31 Aligned_cols=23 Identities=26% Similarity=0.211 Sum_probs=20.9
Q ss_pred ChhHHHHHHHHHHhcCCEEEEec
Q 017259 147 PDGYLKAVRDLCSKYNILMIADE 169 (374)
Q Consensus 147 ~~~~l~~l~~l~~~~~i~li~De 169 (374)
..+.++++++.|+++|+.+|+|=
T Consensus 111 ~~~~ld~vV~~a~~~Gl~VILDl 133 (399)
T 3n9k_A 111 QVQYLEKALGWARKNNIRVWIDL 133 (399)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEE
T ss_pred HHHHHHHHHHHHHHCCCEEEEEe
Confidence 46789999999999999999995
No 317
>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1
Probab=25.76 E-value=23 Score=16.78 Aligned_cols=11 Identities=27% Similarity=0.700 Sum_probs=7.9
Q ss_pred CCCCccccccC
Q 017259 362 ATPCHRCGRNL 372 (374)
Q Consensus 362 ~~~~~~~~~~~ 372 (374)
|..|..||+..
T Consensus 1 ~~~C~~C~k~f 11 (27)
T 1znf_A 1 XYKCGLCERSF 11 (27)
T ss_dssp -CBCSSSCCBC
T ss_pred CccCCCCCCcC
Confidence 46799999864
No 318
>1d3c_A Cyclodextrin glycosyltransferase; alpha-amylase, product complex, oligosaccharide, family 13 glycosyl hydrolase, transglycosylation; HET: GLC; 1.78A {Bacillus circulans} SCOP: b.1.18.2 b.3.1.1 b.71.1.1 c.1.8.1 PDB: 1cxf_A* 1cxk_A* 1cdg_A* 1cxe_A* 1cxh_A* 1cxi_A* 2cxg_A* 1cgv_A* 2dij_A* 1cgy_A* 1kck_A* 1cgx_A* 1cxl_A* 1cgw_A* 1tcm_A 1kcl_A* 1eo5_A* 1eo7_A* 1dtu_A* 1ot1_A* ...
Probab=25.71 E-value=47 Score=32.62 Aligned_cols=60 Identities=12% Similarity=0.060 Sum_probs=41.3
Q ss_pred CCHHHHHHHHH--hcCC-cEEEEEEccccCCC-------C------------------cccCChhHHHHHHHHHHhcCCE
Q 017259 113 GDITALEKIFK--ESGD-QIAGFLFEPIQGEA-------G------------------VIIPPDGYLKAVRDLCSKYNIL 164 (374)
Q Consensus 113 ~d~~~le~~l~--~~~~-~~~~vi~~~~~~~~-------g------------------~~~~~~~~l~~l~~l~~~~~i~ 164 (374)
.|+..+.+.|. .-.+ -+.+|.++|+.-+. | ...-+.+.+++|++-||++||.
T Consensus 52 Gdl~gi~~kLd~~yLk~LGvt~IwL~Pi~~~~~~~~~~~g~~~~~~~GYd~~dy~~idp~~Gt~~dfk~Lv~~aH~~GI~ 131 (686)
T 1d3c_A 52 GDWQGIINKINDGYLTGMGVTAIWISQPVENIYSIINYSGVNNTAYHGYWARDFKKTNPAYGTIADFQNLIAAAHAKNIK 131 (686)
T ss_dssp CCHHHHHHHHHTTTTGGGTCCEEEECCCEEECCCCEESSSCEECCTTSCSEEEEEEECTTTCCHHHHHHHHHHHHHTTCE
T ss_pred cCHHHHHHhcCHHHHHhcCCCEEEeCCcccCCcccccccCccCCCCCCCCcccccccCcccCCHHHHHHHHHHHHHCCCE
Confidence 37777777776 3211 36778887753210 0 1123688899999999999999
Q ss_pred EEEecccc
Q 017259 165 MIADEIQS 172 (374)
Q Consensus 165 li~Dea~~ 172 (374)
||.|-+.-
T Consensus 132 VilD~V~N 139 (686)
T 1d3c_A 132 VIIDFAPN 139 (686)
T ss_dssp EEEEECTT
T ss_pred EEEEeCcC
Confidence 99998764
No 319
>4hty_A Cellulase; (alpha/beta)8 barrel, family 5 endoglucanase, hydrolase; 2.00A {Uncultured bacterium} PDB: 4hu0_A*
Probab=25.68 E-value=46 Score=29.62 Aligned_cols=22 Identities=23% Similarity=0.111 Sum_probs=19.2
Q ss_pred hhHHHHHHHHHHhcCCEEEEec
Q 017259 148 DGYLKAVRDLCSKYNILMIADE 169 (374)
Q Consensus 148 ~~~l~~l~~l~~~~~i~li~De 169 (374)
.+.++++++.|.++|+.+|+|-
T Consensus 120 l~~ld~~v~~a~~~Gi~Vild~ 141 (359)
T 4hty_A 120 LELLDQVVAWNNELGIYTILDW 141 (359)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEE
T ss_pred HHHHHHHHHHHHHCCCEEEEEc
Confidence 4557899999999999999984
No 320
>3o63_A Probable thiamine-phosphate pyrophosphorylase; thiamin biosynthesis, TIM barrel, transferase; 2.35A {Mycobacterium tuberculosis}
Probab=25.59 E-value=51 Score=27.63 Aligned_cols=51 Identities=10% Similarity=0.145 Sum_probs=30.5
Q ss_pred HHHHHHHHHhcCCcEEEEEEccccCC----CCcccCChh---HHHHHHHHHHhcCCEEEEec
Q 017259 115 ITALEKIFKESGDQIAGFLFEPIQGE----AGVIIPPDG---YLKAVRDLCSKYNILMIADE 169 (374)
Q Consensus 115 ~~~le~~l~~~~~~~~~vi~~~~~~~----~g~~~~~~~---~l~~l~~l~~~~~i~li~De 169 (374)
.+.++++++ ..+..+.+--...+ .|. ....+ ..+++.++|++|++.+|+++
T Consensus 46 ~~~~~~al~---~Gv~~vqlR~K~~~~~~~~~~-l~~~~~~~~a~~l~~l~~~~~~~liInd 103 (243)
T 3o63_A 46 AQFAEAALA---GGVDIIQLRDKGSPGELRFGP-LQARDELAACEILADAAHRYGALFAVND 103 (243)
T ss_dssp HHHHHHHHH---TTCSEEEECCTTCHHHHHHCS-CCHHHHHHHHHHHHHHHHHTTCEEEEES
T ss_pred HHHHHHHHH---CCCCEEEEccCCCCccccccC-CCHHHHHHHHHHHHHHHHhhCCEEEEeC
Confidence 566777776 34566666433211 000 11222 24789999999999999865
No 321
>3bmv_A Cyclomaltodextrin glucanotransferase; glycosidase, thermostable, family 13 glycosyl hydrolas; 1.60A {Thermoanaerobacterium thermosulfurigenorganism_taxid} SCOP: b.1.18.2 b.3.1.1 b.71.1.1 c.1.8.1 PDB: 3bmw_A* 1ciu_A 1a47_A 1pj9_A* 1cgt_A
Probab=25.57 E-value=48 Score=32.57 Aligned_cols=60 Identities=12% Similarity=0.067 Sum_probs=40.9
Q ss_pred CCHHHHHHHHH--hcCC-cEEEEEEccccCCC----------------C----------cccCChhHHHHHHHHHHhcCC
Q 017259 113 GDITALEKIFK--ESGD-QIAGFLFEPIQGEA----------------G----------VIIPPDGYLKAVRDLCSKYNI 163 (374)
Q Consensus 113 ~d~~~le~~l~--~~~~-~~~~vi~~~~~~~~----------------g----------~~~~~~~~l~~l~~l~~~~~i 163 (374)
.|+..+.+.|. .-.+ -+.+|.++|+..+. | ...-+.+.+++|++-||++|+
T Consensus 52 Gdl~gi~~kLd~~yLk~LGvtaIwL~Pi~~~~~~~~~~~g~~g~~~~~GYd~~dy~~idp~~Gt~~dfk~Lv~~aH~~Gi 131 (683)
T 3bmv_A 52 GDWQGIINKINDGYLTGMGVTAIWIPQPVENIYAVLPDSTFGGSTSYHGYWARDFKRTNPYFGSFTDFQNLINTAHAHNI 131 (683)
T ss_dssp CCHHHHHHHHHTSTTGGGTCCEEEECCCEEECCCCEEETTTEEECSTTSCSEEEEEEECTTTCCHHHHHHHHHHHHHTTC
T ss_pred cCHHHHHHhcCHHHHHHcCCCEEEeCccccCcccccccccccCCCCCCCcCcccccccCcccCCHHHHHHHHHHHHHCCC
Confidence 37777777776 3211 36677777753210 0 112367889999999999999
Q ss_pred EEEEecccc
Q 017259 164 LMIADEIQS 172 (374)
Q Consensus 164 ~li~Dea~~ 172 (374)
.||.|-++-
T Consensus 132 kVilD~V~N 140 (683)
T 3bmv_A 132 KVIIDFAPN 140 (683)
T ss_dssp EEEEEECTT
T ss_pred EEEEEEccc
Confidence 999998764
No 322
>1egz_A Endoglucanase Z, EGZ, CEL5; glycosyl hydrolase, CLAN GH-A, family 5-2, cellulase; 2.30A {Erwinia chrysanthemi} SCOP: c.1.8.3
Probab=25.56 E-value=47 Score=28.32 Aligned_cols=54 Identities=9% Similarity=0.054 Sum_probs=31.5
Q ss_pred CHHHHHHHHHhcC-CcEEEEEEccccCCCCcccC---ChhHHHHHHHHHHhcCCEEEEec
Q 017259 114 DITALEKIFKESG-DQIAGFLFEPIQGEAGVIIP---PDGYLKAVRDLCSKYNILMIADE 169 (374)
Q Consensus 114 d~~~le~~l~~~~-~~~~~vi~~~~~~~~g~~~~---~~~~l~~l~~l~~~~~i~li~De 169 (374)
+.++++..-++.+ +.+|.-+--. ..++.... ..+.++++.+.|.++|+.+|+|-
T Consensus 40 ~~~d~~~l~~~~G~N~vR~~~~~~--~~~~~~~~~~~~~~~ld~~v~~a~~~Gi~vild~ 97 (291)
T 1egz_A 40 TADTVASLKKDWKSSIVRAAMGVQ--ESGGYLQDPAGNKAKVERVVDAAIANDMYAIIGW 97 (291)
T ss_dssp SHHHHHHHHHTTCCCEEEEEEECS--STTSTTTCHHHHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred CHHHHHHHHHHcCCCEEEEecccc--ccCCCcCCHHHHHHHHHHHHHHHHHCCCEEEEEc
Confidence 3466654332433 4566654321 11222221 13567889999999999999984
No 323
>1qys_A TOP7; alpha-beta, novel fold, de novo protein; 2.50A {Computationally designed sequence} SCOP: k.41.1.1
Probab=25.47 E-value=1.5e+02 Score=19.55 Aligned_cols=46 Identities=17% Similarity=0.195 Sum_probs=32.7
Q ss_pred HHHHHHHHHCCeEeccCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhccCCcCCC
Q 017259 300 YDICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVLELDLPKMRK 354 (374)
Q Consensus 300 ~~~~~~l~~~Gi~v~~~~~~~lRi~~~~~~~~e~i~~~~~~l~~~~~~~~~~~~~ 354 (374)
.++.++..++| ...+||++. ..+..+.+++...|.+++. ++-.+..
T Consensus 34 nelmdyikkqg-------akrvrisit-artkkeaekfaailikvfa-elgyndi 79 (106)
T 1qys_A 34 NELMDYIKKQG-------AKRVRISIT-ARTKKEAEKFAAILIKVFA-ELGYNDI 79 (106)
T ss_dssp HHHHHHHHHHC-------CSEEEEEEE-CSSHHHHHHHHHHHHHHHH-HTTCCEE
T ss_pred HHHHHHHHhcC-------CcEEEEEEE-ecchhHHHHHHHHHHHHHH-HhCCcce
Confidence 34555555555 677888855 5688899999999999998 7755443
No 324
>1g01_A Endoglucanase; alpha/beta barrel, TIM barrel, hydrolase; 1.90A {Bacillus SP} SCOP: c.1.8.3 PDB: 1g0c_A*
Probab=25.46 E-value=46 Score=29.63 Aligned_cols=56 Identities=13% Similarity=0.089 Sum_probs=32.6
Q ss_pred CHHHHHHHHHhcC-CcEEEEEEccccCCCCcccC-ChhHHHHHHHHHHhcCCEEEEeccc
Q 017259 114 DITALEKIFKESG-DQIAGFLFEPIQGEAGVIIP-PDGYLKAVRDLCSKYNILMIADEIQ 171 (374)
Q Consensus 114 d~~~le~~l~~~~-~~~~~vi~~~~~~~~g~~~~-~~~~l~~l~~l~~~~~i~li~Dea~ 171 (374)
+.++++...++.+ +.+|+-+--. ..+....+ -.+.++++++.|+++|+.+|+|--.
T Consensus 55 ~~~d~~~l~~~~G~N~VRip~~~~--~~~~~~~~~~l~~ld~~v~~a~~~Gi~VIld~H~ 112 (364)
T 1g01_A 55 NENAFVALSNDWGSNMIRLAMYIG--ENGYATNPEVKDLVYEGIELAFEHDMYVIVDWHV 112 (364)
T ss_dssp SHHHHHHHHTTSCCSEEEEEEESS--SSSTTTCTTHHHHHHHHHHHHHHTTCEEEEEEEC
T ss_pred CHHHHHHHHHHCCCCEEEEEeeeC--CCCCccCHHHHHHHHHHHHHHHHCCCEEEEEecc
Confidence 3466665443433 4566655421 11111111 1246888999999999999998654
No 325
>3aj7_A Oligo-1,6-glucosidase; (beta/alpha)8-barrel, hydrolase; 1.30A {Saccharomyces cerevisiae} PDB: 3a4a_A* 3a47_A 3axi_A* 3axh_A*
Probab=25.16 E-value=50 Score=31.77 Aligned_cols=26 Identities=15% Similarity=0.128 Sum_probs=23.7
Q ss_pred ChhHHHHHHHHHHhcCCEEEEecccc
Q 017259 147 PDGYLKAVRDLCSKYNILMIADEIQS 172 (374)
Q Consensus 147 ~~~~l~~l~~l~~~~~i~li~Dea~~ 172 (374)
+.+.+++|++-||++|+.||.|-+..
T Consensus 86 t~~df~~lv~~~h~~Gi~VilD~V~N 111 (589)
T 3aj7_A 86 TNEDCFALIEKTHKLGMKFITDLVIN 111 (589)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEEECCS
T ss_pred CHHHHHHHHHHHHHCCCEEEEEeccc
Confidence 67889999999999999999998865
No 326
>3bzs_A ESCU; auto cleavage protein, intein, T3SS, TTSS, asparagine cycliz membrane, membrane protein, protein transport; 1.48A {Escherichia coli} PDB: 3bzr_A 3bzp_A 3bzt_A 3c03_A
Probab=25.04 E-value=36 Score=25.70 Aligned_cols=22 Identities=23% Similarity=0.252 Sum_probs=19.4
Q ss_pred HHHHHHHHHhcCCEEEEecccc
Q 017259 151 LKAVRDLCSKYNILMIADEIQS 172 (374)
Q Consensus 151 l~~l~~l~~~~~i~li~Dea~~ 172 (374)
-.+|.+++++||++++.|...+
T Consensus 83 A~~I~e~A~e~gVPi~e~~~LA 104 (137)
T 3bzs_A 83 ALQIIKLAELYDIPVIEDIPLA 104 (137)
T ss_dssp HHHHHHHHHHHTCCEEECHHHH
T ss_pred HHHHHHHHHHcCCCEEeCHHHH
Confidence 6889999999999999997654
No 327
>2ale_A SNU13, NHP2/L7AE family protein YEL026W; splicing, RNA, yeast, His-TAG, RNA binding protein; 1.80A {Saccharomyces cerevisiae} SCOP: d.79.3.1 PDB: 1zwz_A 2ozb_A 3siu_A 3siv_A 1e7k_A
Probab=25.00 E-value=1.2e+02 Score=22.57 Aligned_cols=45 Identities=13% Similarity=0.082 Sum_probs=29.0
Q ss_pred HHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEe
Q 017259 115 ITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIAD 168 (374)
Q Consensus 115 ~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~D 168 (374)
.....+++++ .+.+.+++...-. +.+....|..+|+++|++++.-
T Consensus 37 ~~~v~kai~~--gkakLViiA~D~~-------p~~~~~~l~~lc~~~~VP~~~v 81 (134)
T 2ale_A 37 ANEATKTLNR--GISEFIIMAADCE-------PIEILLHLPLLCEDKNVPYVFV 81 (134)
T ss_dssp HHHHHHHHHH--TCEEEEEEETTCS-------SGGGGTHHHHHHHHHTCCEEEE
T ss_pred chHHHHHHHh--CCCeEEEEeCCCC-------HHHHHHHHHHHHHhcCCCEEEE
Confidence 4455566664 3566666655332 2234778889999999997643
No 328
>2cks_A Endoglucanase E-5; carbohydrate metabolism, polysaccharide degradation, glycoside hydrolase family 5, hydrolase, glycosidase; HET: BEN; 1.6A {Thermobifida fusca} PDB: 2ckr_A*
Probab=24.87 E-value=48 Score=28.59 Aligned_cols=53 Identities=17% Similarity=0.225 Sum_probs=31.8
Q ss_pred CHHHHHHHHHhcC-CcEEEEEEccccCCCCcccCC---hhHHHHHHHHHHhcCCEEEEec
Q 017259 114 DITALEKIFKESG-DQIAGFLFEPIQGEAGVIIPP---DGYLKAVRDLCSKYNILMIADE 169 (374)
Q Consensus 114 d~~~le~~l~~~~-~~~~~vi~~~~~~~~g~~~~~---~~~l~~l~~l~~~~~i~li~De 169 (374)
+.++++...++.+ +.+|.-+.-. ..|....+ .+.++++++.|+++|+.+|+|-
T Consensus 44 ~~~d~~~l~~~~G~N~vRi~~~~~---~~~~~~~~~~~l~~ld~~v~~a~~~Gl~vild~ 100 (306)
T 2cks_A 44 TDSSLDALAYDWKADIIRLSMYIQ---EDGYETNPRGFTDRMHQLIDMATARGLYVIVDW 100 (306)
T ss_dssp SHHHHHHHHHTSCCSEEEEEEESS---TTSGGGCHHHHHHHHHHHHHHHHTTTCEEEEEE
T ss_pred CHHHHHHHHHHcCCCEEEEEeeec---CCCcccCHHHHHHHHHHHHHHHHHCCCEEEEEe
Confidence 3456665444433 4566654311 11212211 2568899999999999999984
No 329
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A
Probab=24.35 E-value=27 Score=16.80 Aligned_cols=11 Identities=27% Similarity=0.721 Sum_probs=8.7
Q ss_pred CCCCccccccC
Q 017259 362 ATPCHRCGRNL 372 (374)
Q Consensus 362 ~~~~~~~~~~~ 372 (374)
|..|..||+..
T Consensus 2 ~~~C~~C~~~f 12 (29)
T 1ard_A 2 SFVCEVCTRAF 12 (29)
T ss_dssp CCBCTTTCCBC
T ss_pred CeECCCCCccc
Confidence 57899999864
No 330
>3m07_A Putative alpha amylase; IDP00968, csgid, structural genomics, center for structural genomics of infectious diseases, unknown function; HET: BTB PG4 PGE; 1.40A {Salmonella enterica subsp}
Probab=24.33 E-value=65 Score=31.20 Aligned_cols=28 Identities=18% Similarity=0.265 Sum_probs=24.7
Q ss_pred ChhHHHHHHHHHHhcCCEEEEeccccCC
Q 017259 147 PDGYLKAVRDLCSKYNILMIADEIQSGL 174 (374)
Q Consensus 147 ~~~~l~~l~~l~~~~~i~li~Dea~~~~ 174 (374)
+.+.++++++-||++||.||.|-++.-+
T Consensus 201 ~~~~~~~lv~~~H~~Gi~VilD~V~NH~ 228 (618)
T 3m07_A 201 TPDDFKAFIDAAHGYGLSVVLDIVLNHF 228 (618)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEEECCSCC
T ss_pred CHHHHHHHHHHHHHCCCEEEEeecCccC
Confidence 5788999999999999999999887633
No 331
>1ea9_C Cyclomaltodextrinase; hydrolase, glycosidase; 3.2A {Bacillus SP} SCOP: b.1.18.2 b.71.1.1 c.1.8.1
Probab=23.84 E-value=49 Score=31.79 Aligned_cols=59 Identities=17% Similarity=0.280 Sum_probs=39.1
Q ss_pred CHHHHHHHHHhcC-CcEEEEEEccccCCCC-------------cccCChhHHHHHHHHHHhcCCEEEEecccc
Q 017259 114 DITALEKIFKESG-DQIAGFLFEPIQGEAG-------------VIIPPDGYLKAVRDLCSKYNILMIADEIQS 172 (374)
Q Consensus 114 d~~~le~~l~~~~-~~~~~vi~~~~~~~~g-------------~~~~~~~~l~~l~~l~~~~~i~li~Dea~~ 172 (374)
|+..+.+.|..-. =.+.+|.++|+..... ....+.+.++++++-||++||.||.|-++.
T Consensus 170 d~~gi~~~LdyLk~LGvt~I~L~Pi~~~~~~~GYd~~dy~~idp~~Gt~~df~~lv~~~H~~Gi~VilD~V~N 242 (583)
T 1ea9_C 170 DLQGVIDHLDHLSKLGVNAVYFTPLFKATTNHKYDTEDYFQIDPQFGDKDTLKKLVDLCHERGIRVLLDAVFN 242 (583)
T ss_dssp CHHHHHHTHHHHHHHTCSEEEECCCSSCSSSSTTSCSCTTCCCTTTCCHHHHHHHHHHHTTTTCEEEEECCCS
T ss_pred CHHHHHHhhHHHHHcCCCEEEECCCccCCCCCCcCcccccccCcccCCHHHHHHHHHHHHHCCCEEEEEEccc
Confidence 5665555444210 1366788887633211 112267889999999999999999998865
No 332
>2xio_A Putative deoxyribonuclease tatdn1; hydrolase; 1.19A {Homo sapiens}
Probab=23.68 E-value=3.2e+02 Score=23.20 Aligned_cols=53 Identities=9% Similarity=0.081 Sum_probs=31.1
Q ss_pred HHHHHHHHHhcCCcEEEEEEcc---ccC-CCCcccCChhHHHHHHHHHHhcCCEEEEe
Q 017259 115 ITALEKIFKESGDQIAGFLFEP---IQG-EAGVIIPPDGYLKAVRDLCSKYNILMIAD 168 (374)
Q Consensus 115 ~~~le~~l~~~~~~~~~vi~~~---~~~-~~g~~~~~~~~l~~l~~l~~~~~i~li~D 168 (374)
++.|++.+.++++++.++ -+. .+. .........+.+++..++|+++|++|++=
T Consensus 90 ~~~l~~~~~~~~~~~~aI-GEiGLd~~~~~~~~~~~Q~~~f~~ql~lA~~~~lPv~iH 146 (301)
T 2xio_A 90 LKELLNLAENNKGKVVAI-GECGLDFDRLQFCPKDTQLKYFEKQFELSEQTKLPMFLH 146 (301)
T ss_dssp HHHHHHHHHTCTTTEEEE-EEEEEETTCTTTSCHHHHHHHHHHTHHHHHHHCCCEEEE
T ss_pred HHHHHHHHhcCCCCeEEE-EEeeCCCCcCCCCCHHHHHHHHHHHHHHHHHhCCcEEEE
Confidence 567777776543455554 221 111 11111113467889999999999988864
No 333
>1h4p_A Glucan 1,3-beta-glucosidase I/II; hydrolase, glucan degradation, hydrolyase, glycosidase; HET: NAG BMA MAN NDG; 1.75A {Saccharomyces cerevisiae} SCOP: c.1.8.3
Probab=23.53 E-value=52 Score=29.93 Aligned_cols=25 Identities=12% Similarity=0.162 Sum_probs=21.3
Q ss_pred ChhHHHHHHHHHHhcCCEEEEeccc
Q 017259 147 PDGYLKAVRDLCSKYNILMIADEIQ 171 (374)
Q Consensus 147 ~~~~l~~l~~l~~~~~i~li~Dea~ 171 (374)
..+.++++++.|+++|+.+|+|--+
T Consensus 112 ~l~~ld~vv~~a~~~Gi~VilDlH~ 136 (408)
T 1h4p_A 112 QESYLDQAIGWARNNSLKVWVDLHG 136 (408)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEEEE
T ss_pred HHHHHHHHHHHHHHCCCEEEEECCC
Confidence 4567999999999999999998543
No 334
>2xzm_U Ribosomal protein L7AE containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_U
Probab=23.48 E-value=1.3e+02 Score=22.13 Aligned_cols=45 Identities=18% Similarity=0.253 Sum_probs=28.8
Q ss_pred HHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEe
Q 017259 115 ITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIAD 168 (374)
Q Consensus 115 ~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~D 168 (374)
.....++|++ .+...+++-..-. +......|-.+|++++++++.=
T Consensus 29 ~~~v~Kai~~--gka~LViiA~D~~-------p~~~~~~i~~lc~~~~Ip~~~v 73 (126)
T 2xzm_U 29 LHEVLRTIEA--KQALFVCVAEDCD-------QGNYVKLVKALCAKNEIKYVSV 73 (126)
T ss_dssp HHHHHHHHHH--TCCSEEEEESSCC-------STTHHHHHHHHHHHTTCCEEEE
T ss_pred HHHHHHHHHc--CCceEEEEeCCCC-------hHHHHHHHHHHHHHhCCCEEEE
Confidence 4444556664 2555566544321 2344788999999999998853
No 335
>1zzm_A Putative deoxyribonuclease YJJV; hydrolaze, zinc, PEG, structural genomics, PSI; HET: P33; 1.80A {Escherichia coli} SCOP: c.1.9.12
Probab=23.35 E-value=3.1e+02 Score=22.42 Aligned_cols=54 Identities=13% Similarity=0.225 Sum_probs=30.5
Q ss_pred CHHHHHHHHHhcCCcEEEEEEcc---ccCCCCcccCChhHHHHHHHHHHhcCCEEEEe
Q 017259 114 DITALEKIFKESGDQIAGFLFEP---IQGEAGVIIPPDGYLKAVRDLCSKYNILMIAD 168 (374)
Q Consensus 114 d~~~le~~l~~~~~~~~~vi~~~---~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~D 168 (374)
.++.+++.+.++.+++.++ -+. ............+.+++..++|+++|++|++=
T Consensus 77 ~~~~l~~~~~~~~~~~~~i-GEiGld~~~~~~~~~~q~~~f~~~~~~a~~~~~Pv~iH 133 (259)
T 1zzm_A 77 SLEQLQQALERRPAKVVAV-GEIGLDLFGDDPQFERQQWLLDEQLKLAKRYDLPVILH 133 (259)
T ss_dssp HHHHHHHHHHHCCSSEEEE-EEEEEECCSSCCCHHHHHHHHHHHHHHHHHTTCCEEEE
T ss_pred HHHHHHHHHhcCCCCEEEE-EEeccCCCCCCCCHHHHHHHHHHHHHHHHHhCCcEEEE
Confidence 3667777776533455443 121 11111101113457888999999999998854
No 336
>2jlj_A YSCU, YOP proteins translocation protein U; cell membrane, transmembrane, yersinia pesits, protein trans type III secretion system, membrane; 1.3A {Yersinia pestis} PDB: 2jlh_A* 2v5g_A 2w0r_A
Probab=23.32 E-value=41 Score=25.67 Aligned_cols=22 Identities=9% Similarity=0.225 Sum_probs=19.4
Q ss_pred HHHHHHHHHhcCCEEEEecccc
Q 017259 151 LKAVRDLCSKYNILMIADEIQS 172 (374)
Q Consensus 151 l~~l~~l~~~~~i~li~Dea~~ 172 (374)
-.+|.+++++||++++.|...+
T Consensus 82 A~~I~e~A~e~gVPi~e~~~LA 103 (144)
T 2jlj_A 82 VQTVRKIAEEEGVPILQRIPLA 103 (144)
T ss_dssp HHHHHHHHHHHTCCEEECHHHH
T ss_pred HHHHHHHHHHcCCCEEeCHHHH
Confidence 6889999999999999997554
No 337
>1qnr_A Endo-1,4-B-D-mannanase; hydrolase, anomalous scattering; HET: NAG MAB; 1.4A {Trichoderma reesei} SCOP: c.1.8.3 PDB: 1qno_A* 1qnq_A* 1qnp_A* 1qns_A*
Probab=22.81 E-value=52 Score=28.74 Aligned_cols=23 Identities=17% Similarity=0.069 Sum_probs=20.2
Q ss_pred hhHHHHHHHHHHhcCCEEEEecc
Q 017259 148 DGYLKAVRDLCSKYNILMIADEI 170 (374)
Q Consensus 148 ~~~l~~l~~l~~~~~i~li~Dea 170 (374)
-+.++++.+.|+++|+.+|+|-.
T Consensus 89 ~~~ld~~i~~a~~~Gi~vild~~ 111 (344)
T 1qnr_A 89 LQTLDYVVQSAEQHNLKLIIPFV 111 (344)
T ss_dssp THHHHHHHHHHHHHTCEEEEESC
T ss_pred HHHHHHHHHHHHHCCCEEEEEec
Confidence 56689999999999999999853
No 338
>3mfq_A TROA, high-affinity zinc uptake system protein ZNUA; metal binding protein; 2.60A {Streptococcus suis} SCOP: c.92.2.0
Probab=22.78 E-value=64 Score=27.64 Aligned_cols=43 Identities=7% Similarity=0.078 Sum_probs=29.5
Q ss_pred HHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEE
Q 017259 115 ITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIA 167 (374)
Q Consensus 115 ~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~ 167 (374)
+..+.+.++++ ++++|++++.. ++...+.|.+++++.|+.+..
T Consensus 201 l~~l~~~ik~~--~v~~if~e~~~--------~~~~~~~l~~~a~~~g~~v~~ 243 (282)
T 3mfq_A 201 MIETVNLIIDH--NIKAIFTESTT--------NPERMKKLQEAVKAKGGQVEV 243 (282)
T ss_dssp HHHHHHHHHHH--TCCEEECBTTS--------CTHHHHHHHHHHHTTSCCCEE
T ss_pred HHHHHHHHHHc--CCCEEEEeCCC--------ChHHHHHHHHHHHhcCCceEE
Confidence 44455555544 67888888755 455588889999999876543
No 339
>3vgf_A Malto-oligosyltrehalose trehalohydrolase; alpha/beta barrel, alpha-amylas hydrolase; HET: GLC FLC; 2.30A {Sulfolobus solfataricus} PDB: 3vge_A* 3vgd_A* 3vgb_A* 1eh9_A* 3vgh_A* 3vgg_A* 1eha_A
Probab=22.63 E-value=64 Score=30.75 Aligned_cols=59 Identities=14% Similarity=0.066 Sum_probs=38.1
Q ss_pred CHHHHHHHHHhcC-CcEEEEEEccccCCCCc---------------ccCChhHHHHHHHHHHhcCCEEEEecccc
Q 017259 114 DITALEKIFKESG-DQIAGFLFEPIQGEAGV---------------IIPPDGYLKAVRDLCSKYNILMIADEIQS 172 (374)
Q Consensus 114 d~~~le~~l~~~~-~~~~~vi~~~~~~~~g~---------------~~~~~~~l~~l~~l~~~~~i~li~Dea~~ 172 (374)
+...+.+.|..-. =...+|.+.|+....+. ..-+.+.++++++-||++|+.||.|-++.
T Consensus 117 ~~~~~~~~l~~l~~lG~~~v~l~Pi~~~~~~~~~GY~~~~~~~~~~~~Gt~~d~~~lv~~~h~~Gi~VilD~V~N 191 (558)
T 3vgf_A 117 TFEGVIRKLDYLKDLGITAIEIMPIAQFPGKRDWGYDGVYLYAVQNSYGGPEGFRKLVDEAHKKGLGVILDVVYN 191 (558)
T ss_dssp SHHHHHHTHHHHHHHTCCEEEECCCEECSSSCCCSTTCCEEEEECGGGTHHHHHHHHHHHHHHTTCEEEEEECCS
T ss_pred CHHHHHHHHHHHHHcCCcEEEECCcccCCCCCCcCcccccccccccccCCHHHHHHHHHHHHHcCCEEEEEEeec
Confidence 4555555544211 13567777776332111 11246789999999999999999999875
No 340
>2p5m_A Arginine repressor; alpha-beta, L-arginine binding domain, DNA binding protein; HET: ARG; 1.95A {Bacillus subtilis} SCOP: d.74.2.1
Probab=22.08 E-value=1.8e+02 Score=19.43 Aligned_cols=61 Identities=8% Similarity=0.066 Sum_probs=41.0
Q ss_pred eeeEEEEeeeEEEEeccCCCchhHHHHHHHHHHC---CeEeccCCCCEEEEecCCCCCHHHHHHHHHHHHH
Q 017259 276 VKEVRGRGLFNAVEFDKTALPVSAYDICLKMKER---GILAKPTHDTIVRLTPPLSISSNELQEGSKALHD 343 (374)
Q Consensus 276 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~---Gi~v~~~~~~~lRi~~~~~~~~e~i~~~~~~l~~ 343 (374)
+......++++.+....+ .++.++..+.+. +|+=+-.+.+.+-+. ..+.++.+++.+.|.+
T Consensus 18 v~si~~~~n~vVikT~PG----~A~~vA~~iD~~~~~eIlGTIAGDDTIlvi---~r~~~~a~~l~~~l~~ 81 (83)
T 2p5m_A 18 FVKIDSASHMIVLKTMPG----NAQAIGALMDNLDWDEMMGTICGDDTILII---CRTPEDTEGVKNRLLE 81 (83)
T ss_dssp EEEEEEETTEEEEEESTT----CHHHHHHHHHTTTCTTCCEEEECSSEEEEE---CSSHHHHHHHHHHHHT
T ss_pred EEEEEecCCEEEEEeCCC----cHHHHHHHHHhCCCCCeEEEEecCCEEEEE---ECCHHHHHHHHHHHHH
Confidence 344666788888877655 566666666654 344344457777775 5788888888887754
No 341
>1h1n_A Endo type cellulase ENGI; hydrolase, glycosyl hydrolase, family 5, subtype, thermophilic, thermophIle, endoglucanase; 1.12A {Thermoascus aurantiacus} SCOP: c.1.8.3 PDB: 1gzj_A
Probab=22.04 E-value=61 Score=27.94 Aligned_cols=23 Identities=13% Similarity=0.083 Sum_probs=19.5
Q ss_pred hHHHHHHHHHHhcCCEEEEeccc
Q 017259 149 GYLKAVRDLCSKYNILMIADEIQ 171 (374)
Q Consensus 149 ~~l~~l~~l~~~~~i~li~Dea~ 171 (374)
+.++++++.|+++|+.+|+|--+
T Consensus 72 ~~~~~~v~~~~~~gi~vild~h~ 94 (305)
T 1h1n_A 72 ADLIATVNAITQKGAYAVVDPHN 94 (305)
T ss_dssp HHHHHHHHHHHHTTCEEEEEECC
T ss_pred HHHHHHHHHHHHCCCEEEEeccc
Confidence 45888999999999999999533
No 342
>3czg_A Sucrose hydrolase; (alpha/beta)8-barrel; HET: GLC; 1.80A {Xanthomonas axonopodis PV} PDB: 3cze_A* 3czl_A* 3czk_A* 2wpg_A
Probab=22.03 E-value=62 Score=31.53 Aligned_cols=59 Identities=12% Similarity=0.104 Sum_probs=39.7
Q ss_pred CHHHHHHHHHhcCC-cEEEEEEccccCCC-C---------------cccCChhHHHHHHHHHHhcCCEEEEecccc
Q 017259 114 DITALEKIFKESGD-QIAGFLFEPIQGEA-G---------------VIIPPDGYLKAVRDLCSKYNILMIADEIQS 172 (374)
Q Consensus 114 d~~~le~~l~~~~~-~~~~vi~~~~~~~~-g---------------~~~~~~~~l~~l~~l~~~~~i~li~Dea~~ 172 (374)
|+..+.+.|..-.+ .+.+|.++|+..+. | ...-+.+.+++|++-||++||.||.|-+..
T Consensus 104 dl~gi~~~LdyL~~LGv~~I~L~Pi~~~~~~~~~~GY~~~dy~~vdp~~Gt~~df~~Lv~~aH~~GI~VilD~V~N 179 (644)
T 3czg_A 104 TLQGVAERVPYLQELGVRYLHLLPFLRARAGDNDGGFAVSDYGQVEPSLGSNDDLVALTSRLREAGISLCADFVLN 179 (644)
T ss_dssp SHHHHHHTHHHHHHHTCCEEEECCCBCBCSSCCTTTTSBSCTTSBCGGGCCHHHHHHHHHHHHHTTCEEEEEECCS
T ss_pred CHHHHHHHHHHHHHcCCCEEEeCCCCcCCCCCCCCCcCcccccccCcccCCHHHHHHHHHHHHHCCCEEEEEEecC
Confidence 55655555542112 46788888864322 1 012257889999999999999999998764
No 343
>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1
Probab=21.80 E-value=32 Score=16.76 Aligned_cols=11 Identities=36% Similarity=0.818 Sum_probs=8.5
Q ss_pred CCCCccccccC
Q 017259 362 ATPCHRCGRNL 372 (374)
Q Consensus 362 ~~~~~~~~~~~ 372 (374)
|..|..||+..
T Consensus 2 ~~~C~~C~k~f 12 (30)
T 1paa_A 2 AYACGLCNRAF 12 (30)
T ss_dssp CSBCTTTCCBC
T ss_pred CcCCcccCccc
Confidence 56799999864
No 344
>2p0o_A Hypothetical protein DUF871; structural genomics, TIM barrel, PF05 2, protein structure initiative, midwest center for structu genomics; 2.15A {Enterococcus faecalis}
Probab=21.65 E-value=32 Score=30.88 Aligned_cols=26 Identities=8% Similarity=0.055 Sum_probs=22.2
Q ss_pred ChhHHHHHHHHHHhcCCEEEEecccc
Q 017259 147 PDGYLKAVRDLCSKYNILMIADEIQS 172 (374)
Q Consensus 147 ~~~~l~~l~~l~~~~~i~li~Dea~~ 172 (374)
-.+.+++|.++|+++|+-+|+|=.-.
T Consensus 48 ~~~~~~~l~~~a~~~g~~vi~DIsp~ 73 (372)
T 2p0o_A 48 YRQRLTDLGAIAKAEKMKIMVDISGE 73 (372)
T ss_dssp HHHHHHHHHHHHHHHTCEEEEEECHH
T ss_pred HHHHHHHHHHHHHHCCCEEEEECCHH
Confidence 45779999999999999999996543
No 345
>1g5a_A Amylosucrase; glycosyltransferase, glycoside hydrolase, (beta-alpha)8 barrel; HET: EPE; 1.40A {Neisseria polysaccharea} SCOP: b.71.1.1 c.1.8.1 PDB: 1jg9_A* 1mw1_A* 1mw2_A* 1mw3_A* 3ueq_A* 1jgi_A* 1mvy_A* 1mw0_A* 1s46_A* 1zs2_A*
Probab=21.63 E-value=64 Score=31.31 Aligned_cols=59 Identities=17% Similarity=0.151 Sum_probs=38.3
Q ss_pred CHHHHHHHHHhcCC-cEEEEEEccccCCC-C------------c---ccCChhHHHHHHHHHHhcCCEEEEecccc
Q 017259 114 DITALEKIFKESGD-QIAGFLFEPIQGEA-G------------V---IIPPDGYLKAVRDLCSKYNILMIADEIQS 172 (374)
Q Consensus 114 d~~~le~~l~~~~~-~~~~vi~~~~~~~~-g------------~---~~~~~~~l~~l~~l~~~~~i~li~Dea~~ 172 (374)
|+..+.+.|..-.+ .+.+|.++|+..+. | . ..-+.+.++++++-||++||.||.|-+..
T Consensus 111 dl~gi~~~LdyL~~LGv~~I~L~Pi~~~~~~~~~~GY~v~dy~~vdp~~Gt~~d~~~Lv~~ah~~GI~VilD~V~N 186 (628)
T 1g5a_A 111 DLKGLKDKIPYFQELGLTYLHLMPLFKCPEGKSDGGYAVSSYRDVNPALGTIGDLREVIAALHEAGISAVVDFIFN 186 (628)
T ss_dssp SHHHHHTTHHHHHHHTCSEEEECCCBCCCSSCSTTTTSCSCSSSBCTTTCCHHHHHHHHHHHHHTTCEEEEEECCS
T ss_pred CHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCCcCCcccCCcCccCCCHHHHHHHHHHHHHCCCEEEEEEecC
Confidence 45544444432111 46778888865332 1 0 11257889999999999999999998764
No 346
>2bhu_A Maltooligosyltrehalose trehalohydrolase; alpha-amylase, protein-carbohydrate complex, desiccation resistance; HET: TRS PGE; 1.1A {Deinococcus radiodurans} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 2bhy_A* 2bhz_A* 2bxy_A* 2bxz_A* 2by0_A* 2by1_A* 2by2_A* 2by3_A*
Probab=21.56 E-value=65 Score=31.09 Aligned_cols=59 Identities=12% Similarity=0.066 Sum_probs=38.6
Q ss_pred CHHHHHHHHHhcC-CcEEEEEEccccCCC-----C----------cccCChhHHHHHHHHHHhcCCEEEEecccc
Q 017259 114 DITALEKIFKESG-DQIAGFLFEPIQGEA-----G----------VIIPPDGYLKAVRDLCSKYNILMIADEIQS 172 (374)
Q Consensus 114 d~~~le~~l~~~~-~~~~~vi~~~~~~~~-----g----------~~~~~~~~l~~l~~l~~~~~i~li~Dea~~ 172 (374)
|+..+.+.|..-. =.+.+|.++|+.... | ...-+.+.++++++-||++||.||.|-++.
T Consensus 142 ~~~gi~~~L~yl~~lGv~~I~L~Pi~~~~~~~~wGY~~~~y~~~~~~~Gt~~d~~~lv~~~H~~Gi~VilD~V~N 216 (602)
T 2bhu_A 142 TYRAAAEKLPYLKELGVTAIQVMPLAAFDGQRGWGYDGAAFYAPYAPYGRPEDLMALVDAAHRLGLGVFLDVVYN 216 (602)
T ss_dssp SHHHHHHTHHHHHHHTCCEEEECCCEECSSSCCCSTTCCEEEEECGGGCCHHHHHHHHHHHHHTTCEEEEEECCS
T ss_pred CHHHHHHHHHHHHHcCCCEEEECChhhccCCCCCCcccccCcccCcCCCCHHHHHHHHHHHHHCCCEEEEEeccc
Confidence 5555555444211 135678888763221 1 011257889999999999999999998876
No 347
>3qr3_A Endoglucanase EG-II; TIM barrel, hydrolase; 2.05A {Hypocrea jecorina}
Probab=21.43 E-value=63 Score=28.57 Aligned_cols=58 Identities=12% Similarity=0.029 Sum_probs=35.2
Q ss_pred HHHHHHHHHhcC-CcEEEEEEccc-cC--CCCccc-CChhHHHHHHHHHHhcCCEEEEecccc
Q 017259 115 ITALEKIFKESG-DQIAGFLFEPI-QG--EAGVII-PPDGYLKAVRDLCSKYNILMIADEIQS 172 (374)
Q Consensus 115 ~~~le~~l~~~~-~~~~~vi~~~~-~~--~~g~~~-~~~~~l~~l~~l~~~~~i~li~Dea~~ 172 (374)
..++.+.+++.+ +.+|+-+--.. .. .+|.+. ...+.++++++.|.++|+.+|+|--+.
T Consensus 45 t~~m~~~i~~~G~N~vRipi~w~~~~~~~~~g~~~~~~l~~ld~vV~~a~~~Gi~vIlDlH~~ 107 (340)
T 3qr3_A 45 IGQMQHFVNEDGMTIFRLPVGWQYLVNNNLGGNLDSTSISKYDQLVQGCLSLGAYCIVDIHNY 107 (340)
T ss_dssp HHHHHHHHHHHCCCEEEEEECHHHHTTTCTTCCCCHHHHHHHHHHHHHHHHTTCEEEEEECST
T ss_pred HHHHHHHHHHCCCCEEEEEeeHHHhCCCCCCCccCHHHHHHHHHHHHHHHHCCCEEEEEecCC
Confidence 456666666654 45666553221 11 122221 124568889999999999999996543
No 348
>3ff4_A Uncharacterized protein; structural genomics, PSI- protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Cytophaga hutchinsonii atcc 33406}
Probab=21.37 E-value=58 Score=23.93 Aligned_cols=18 Identities=11% Similarity=0.169 Sum_probs=15.3
Q ss_pred HHHHHHHHhcCCEEEEecc
Q 017259 152 KAVRDLCSKYNILMIADEI 170 (374)
Q Consensus 152 ~~l~~l~~~~~i~li~Dea 170 (374)
+++.++|+++|+.++- .+
T Consensus 95 ~e~~~~a~~~Girvv~-nC 112 (122)
T 3ff4_A 95 EELEEILSENGIEPVI-GC 112 (122)
T ss_dssp HHHHHHHHHTTCEEEE-SC
T ss_pred HHHHHHHHHcCCeEEC-Cc
Confidence 6899999999999883 44
No 349
>3nl6_A Thiamine biosynthetic bifunctional enzyme; thiamin biosynthesis, eukaryoyes, transferase; HET: TPS ACP; 2.61A {Candida glabrata} PDB: 3nl2_A* 3nl5_A* 3nl3_A* 3nm3_A* 3nm1_A*
Probab=21.29 E-value=1.2e+02 Score=28.82 Aligned_cols=49 Identities=10% Similarity=0.176 Sum_probs=32.8
Q ss_pred HHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEec
Q 017259 115 ITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADE 169 (374)
Q Consensus 115 ~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~De 169 (374)
.+.++++++ ..+..+.+--...+... -.+..++|.++|++|++.+|+++
T Consensus 28 ~~~ve~al~---~Gv~~vQlR~K~~~~~~---~~~~a~~l~~l~~~~~v~liIND 76 (540)
T 3nl6_A 28 YGQVEAGLQ---NGVTLVQIREKDADTKF---FIEEALQIKELCHAHNVPLIIND 76 (540)
T ss_dssp HHHHHHHHH---TTCSEEEECCSSSCTTH---HHHHHHHHHHHHHHTTCCEEECS
T ss_pred HHHHHHHHH---CCCCEEEEecCCCCHHH---HHHHHHHHHHHHHhcCCEEEEeC
Confidence 467788887 34666666544332221 13457788999999999999975
No 350
>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}
Probab=21.17 E-value=35 Score=17.32 Aligned_cols=10 Identities=30% Similarity=0.773 Sum_probs=8.0
Q ss_pred CCCCcccccc
Q 017259 362 ATPCHRCGRN 371 (374)
Q Consensus 362 ~~~~~~~~~~ 371 (374)
|..|..||+.
T Consensus 2 p~~C~~C~k~ 11 (32)
T 2kfq_A 2 AFACPACPKR 11 (32)
T ss_dssp CSSSSSSCTT
T ss_pred CCCCCCCCcc
Confidence 5679999985
No 351
>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=26.59 E-value=20 Score=16.95 Aligned_cols=11 Identities=36% Similarity=1.099 Sum_probs=8.2
Q ss_pred CCCCccccccC
Q 017259 362 ATPCHRCGRNL 372 (374)
Q Consensus 362 ~~~~~~~~~~~ 372 (374)
|..|..||+..
T Consensus 2 p~~C~~C~k~f 12 (26)
T 2lvu_A 2 PYVCERCGKRF 12 (26)
Confidence 46799999753
No 352
>2c0h_A Mannan endo-1,4-beta-mannosidase; hydrolase, signal, TIM alpha/beta barrel; 1.6A {Mytilus edulis} SCOP: c.1.8.3
Probab=21.09 E-value=63 Score=28.27 Aligned_cols=21 Identities=19% Similarity=0.205 Sum_probs=18.7
Q ss_pred hHHHHHHHHHHhcCCEEEEec
Q 017259 149 GYLKAVRDLCSKYNILMIADE 169 (374)
Q Consensus 149 ~~l~~l~~l~~~~~i~li~De 169 (374)
+.++++.++|+++|+.+|+|-
T Consensus 91 ~~ld~~~~~a~~~Gi~vil~l 111 (353)
T 2c0h_A 91 SDMRAYLHAAQRHNILIFFTL 111 (353)
T ss_dssp HHHHHHHHHHHHTTCEEEEEE
T ss_pred HHHHHHHHHHHHcCCEEEEEc
Confidence 468999999999999999864
No 353
>1ceo_A Cellulase CELC; glycosyl hydrolase, family A/5 of glycosyl hydrolases, cellulose degradation; 1.90A {Clostridium thermocellum} SCOP: c.1.8.3 PDB: 1cen_A 1cec_A
Probab=20.95 E-value=64 Score=28.19 Aligned_cols=24 Identities=25% Similarity=0.527 Sum_probs=20.4
Q ss_pred hhHHHHHHHHHHhcCCEEEEeccc
Q 017259 148 DGYLKAVRDLCSKYNILMIADEIQ 171 (374)
Q Consensus 148 ~~~l~~l~~l~~~~~i~li~Dea~ 171 (374)
.+.++++++.|+++|+.+|+|--+
T Consensus 68 ~~~l~~~v~~a~~~Gi~vildlh~ 91 (343)
T 1ceo_A 68 LSYIDRCLEWCKKYNLGLVLDMHH 91 (343)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEEEE
T ss_pred HHHHHHHHHHHHHCCCEEEEEecC
Confidence 346789999999999999999654
No 354
>1vko_A Inositol-3-phosphate synthase; CE21227, structural genomics, protein structure initiative, PSI, joint center for structu genomics; HET: NAD; 2.30A {Caenorhabditis elegans} SCOP: c.2.1.3 d.81.1.3
Probab=20.90 E-value=1.3e+02 Score=28.32 Aligned_cols=53 Identities=9% Similarity=0.285 Sum_probs=34.7
Q ss_pred CCHHHHHHHHHhcCCcE-------------EEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEeccccC
Q 017259 113 GDITALEKIFKESGDQI-------------AGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSG 173 (374)
Q Consensus 113 ~d~~~le~~l~~~~~~~-------------~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~~ 173 (374)
++.+.|+++|++..+.+ .+-+++....++ . ..++.++++++|++++=||.-+|
T Consensus 263 ~t~~~L~~ai~~~~~eisaS~~YA~AAl~aG~~FIN~sP~~~---~-----~P~~~elae~~gvpI~GDD~KSG 328 (537)
T 1vko_A 263 ATADEIMESIRVNEDEVSPSNIFAVASILEGAHYINGSPQNT---L-----VPGLIELAERHKVFVGGDDFKSG 328 (537)
T ss_dssp SSHHHHHHHHHTTCSSCCHHHHHHHHHHHTTCEEEECSSSCC---C-----CHHHHHHHHHHTCCEECSCBCCS
T ss_pred cCHHHHHHHHhcCCccCChHHHHHHHHHhcCCceeecCCccc---C-----CHHHHHHHHHhCCceeccccccC
Confidence 47899999988643322 122333322222 1 56789999999999999997663
No 355
>1m7x_A 1,4-alpha-glucan branching enzyme; alpha/beta barrel, beta sandwich, transferase; 2.30A {Escherichia coli} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 3o7y_A* 3o7z_A*
Probab=20.83 E-value=68 Score=31.01 Aligned_cols=59 Identities=10% Similarity=0.010 Sum_probs=38.5
Q ss_pred CHHHHHHHH-Hhc-CCcEEEEEEccccCCCC---------------cccCChhHHHHHHHHHHhcCCEEEEecccc
Q 017259 114 DITALEKIF-KES-GDQIAGFLFEPIQGEAG---------------VIIPPDGYLKAVRDLCSKYNILMIADEIQS 172 (374)
Q Consensus 114 d~~~le~~l-~~~-~~~~~~vi~~~~~~~~g---------------~~~~~~~~l~~l~~l~~~~~i~li~Dea~~ 172 (374)
+...+.+.+ ..- .=.+.+|.++|+..... ...-+.+.++++++-||++||.||.|-++.
T Consensus 153 ~~~~i~~~ll~yl~~lGv~~i~l~Pi~~~~~~~~~GY~~~~y~~~~~~~Gt~~~~~~lv~~~H~~Gi~VilD~V~N 228 (617)
T 1m7x_A 153 SYRELADQLVPYAKWMGFTHLELLPINEHPFDGSWGYQPTGLYAPTRRFGTRDDFRYFIDAAHAAGLNVILDWVPG 228 (617)
T ss_dssp CHHHHHHHHHHHHHHTTCSEEEESCCEECSCGGGTTSSCSEEEEECGGGSCHHHHHHHHHHHHHTTCEEEEEECTT
T ss_pred CHHHHHHHHHHHHHHcCCCEEEecccccCCCCCCCCcccccCCccCccCCCHHHHHHHHHHHHHCCCEEEEEEecC
Confidence 566655543 321 01356777777532211 011257889999999999999999998875
No 356
>3dgp_A RNA polymerase II transcription factor B subunit; protein-protein complex, beta-alpha-beta spilt, heterodimer, damage, DNA excision; 1.80A {Saccharomyces cerevisiae}
Probab=20.71 E-value=1.2e+02 Score=20.33 Aligned_cols=26 Identities=8% Similarity=0.183 Sum_probs=23.3
Q ss_pred ChhHHHHHHHHHHhcCCEEEEecccc
Q 017259 147 PDGYLKAVRDLCSKYNILMIADEIQS 172 (374)
Q Consensus 147 ~~~~l~~l~~l~~~~~i~li~Dea~~ 172 (374)
|....+.+++.|++.|++|-.|+..-
T Consensus 31 s~~efe~~~~yA~e~gvLlW~~~~kr 56 (80)
T 3dgp_A 31 TSQEYNLLSKYAQDIGVLLWKDDKKK 56 (80)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEETTTT
T ss_pred CHHHHHHHHHHHHHcCeEEEecCCcc
Confidence 77889999999999999999998753
No 357
>1sur_A PAPS reductase; assimilatory sulfate reduction, 3-phospho-adenylyl-sulfate reductase, oxidoreductase; 2.00A {Escherichia coli} SCOP: c.26.2.2
Probab=20.63 E-value=2.5e+02 Score=22.44 Aligned_cols=47 Identities=9% Similarity=0.021 Sum_probs=31.1
Q ss_pred CHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEE
Q 017259 114 DITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIA 167 (374)
Q Consensus 114 d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~ 167 (374)
|...+-..+.+...++.++++++... .++..+.+.++|+++|+.+++
T Consensus 56 DS~vLL~ll~~~~~~v~~v~vd~g~~-------~~e~~~~v~~~~~~~gi~~~v 102 (215)
T 1sur_A 56 QAAVSLHLVNQIRPDIPVILTDTGYL-------FPETYRFIDELTDKLKLNLKV 102 (215)
T ss_dssp THHHHHHHHHHHSTTCEEEEEECSCB-------CHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHHHhCCCCeEEEeeCCCC-------CHHHHHHHHHHHHHhCCcEEE
Confidence 44444444444335677787776432 356688899999999998764
No 358
>3b0z_B Flagellar biosynthetic protein FLHB; type III secretion system, protein transport, MEMB protein; 2.45A {Salmonella enterica subsp}
Probab=26.06 E-value=21 Score=26.05 Aligned_cols=22 Identities=5% Similarity=0.107 Sum_probs=19.5
Q ss_pred HHHHHHHHHhcCCEEEEecccc
Q 017259 151 LKAVRDLCSKYNILMIADEIQS 172 (374)
Q Consensus 151 l~~l~~l~~~~~i~li~Dea~~ 172 (374)
-++|.+++++||++++.|....
T Consensus 29 A~~I~e~A~e~gVPi~e~~~LA 50 (114)
T 3b0z_B 29 ALRIREIGAEHRVPTLEAPPLA 50 (114)
Confidence 6789999999999999997655
No 359
>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=20.42 E-value=24 Score=16.90 Aligned_cols=11 Identities=18% Similarity=0.522 Sum_probs=8.4
Q ss_pred CCCCccccccC
Q 017259 362 ATPCHRCGRNL 372 (374)
Q Consensus 362 ~~~~~~~~~~~ 372 (374)
|..|..||+..
T Consensus 3 ~~~C~~C~k~f 13 (27)
T 2kvh_A 3 PFSCSLCPQRS 13 (27)
T ss_dssp CEECSSSSCEE
T ss_pred CccCCCcChhh
Confidence 56799999853
No 360
>1fv5_A First zinc finger of U-shaped; CCHC, protein interaction, transcription; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1y0j_B 2l6z_B
Probab=20.30 E-value=22 Score=19.68 Aligned_cols=12 Identities=25% Similarity=0.589 Sum_probs=9.5
Q ss_pred CCCCCccccccC
Q 017259 361 PATPCHRCGRNL 372 (374)
Q Consensus 361 ~~~~~~~~~~~~ 372 (374)
-|+.|..|||..
T Consensus 7 kp~~C~~CgK~F 18 (36)
T 1fv5_A 7 ARFMCLPCGIAF 18 (36)
T ss_dssp CCCEETTTTEEC
T ss_pred cCeECCCCCCcc
Confidence 468899999863
No 361
>3ghf_A Septum site-determining protein MINC; structural genomics, cell division, cell cycle, septation, PSI-2, protein structure initiative; HET: CIT; 2.20A {Salmonella typhimurium LT2}
Probab=20.21 E-value=1.1e+02 Score=22.37 Aligned_cols=16 Identities=6% Similarity=0.243 Sum_probs=15.2
Q ss_pred HHHHHHHHHhcCCEEE
Q 017259 151 LKAVRDLCSKYNILMI 166 (374)
Q Consensus 151 l~~l~~l~~~~~i~li 166 (374)
+.+|.++|+++|+.+|
T Consensus 63 l~~L~~~l~~~gl~~v 78 (120)
T 3ghf_A 63 WPELHKIVTSTGLRII 78 (120)
T ss_dssp HHHHHHHHHTTTCEEE
T ss_pred HHHHHHHHHHcCCEEE
Confidence 9999999999999886
No 362
>3zss_A Putative glucanohydrolase PEP1A; alpha-glucan biosynthesis, glycoside hydrolase FA; 1.80A {Streptomyces coelicolor} PDB: 3zst_A* 3zt5_A* 3zt6_A* 3zt7_A*
Probab=20.15 E-value=72 Score=31.42 Aligned_cols=26 Identities=8% Similarity=-0.074 Sum_probs=23.5
Q ss_pred ChhHHHHHHHHHHhcCCEEEEecccc
Q 017259 147 PDGYLKAVRDLCSKYNILMIADEIQS 172 (374)
Q Consensus 147 ~~~~l~~l~~l~~~~~i~li~Dea~~ 172 (374)
+.+.++++++-||++|+.||.|-++.
T Consensus 319 t~edfk~LV~~aH~~GI~VilD~V~N 344 (695)
T 3zss_A 319 TLDDFDHFVTEAGKLGLEIALDFALQ 344 (695)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEEECCE
T ss_pred CHHHHHHHHHHHHHCCCEEEEEeecc
Confidence 56889999999999999999998764
Done!