BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 017260
         (374 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|B6EIX8|AROA_ALISL 3-phosphoshikimate 1-carboxyvinyltransferase OS=Aliivibrio
           salmonicida (strain LFI1238) GN=aroA PE=3 SV=1
          Length = 427

 Score = 33.1 bits (74), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 31/100 (31%), Positives = 46/100 (46%), Gaps = 14/100 (14%)

Query: 95  LFSKGTT--RSIYF-----LDRQVNDSIQVDWGGASMIEAER-------ILLRHALADPF 140
           LF+KGTT  R++Y       DR    + ++   GA + E E         +LRHA  D +
Sbjct: 325 LFAKGTTSIRNVYNWRVKETDRLAAMATELRKVGAEVEEGEDYITITPPAMLRHATIDTY 384

Query: 141 NDRFVFLSDSCIPLYNFSYTYNYIMSTSTSFVDSFADTKE 180
           +D  + +  S + L +   T N    TS +F D F   KE
Sbjct: 385 DDHRMAMCFSLVALSDTPVTINDPGCTSKTFPDYFDKLKE 424


>sp|P18479|POLG_ZYMVC Genome polyprotein OS=Zucchini yellow mosaic virus (strain
            California) PE=1 SV=2
          Length = 3080

 Score = 32.7 bits (73), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 32/137 (23%), Positives = 49/137 (35%), Gaps = 9/137 (6%)

Query: 154  LYNFSYTYNYIMSTSTSFVDSFADTKEGRYNPKMAPVIPV--HNWRKGSQWAVLTRKHAE 211
            +Y     YN I +      +     KE  Y     P+I    H +RK +   ++   H E
Sbjct: 2045 IYKGVRDYNGISTIVCQLTNDSDGLKETMYGIGYGPIIITNGHLFRKNNGTLLVRSWHGE 2104

Query: 212  IVVNDTTVFPMFQQHCKR-------KSLPEFWREHSFPADPSKEHNCIPDEHYVQTLLAQ 264
             +V +TT   +     K        K  P F    SF A   +E  C+   ++ +  L  
Sbjct: 2105 FIVKNTTTLKVHFIEGKDVVLVRMPKDFPPFKSNASFRAPKREERRCLVGTNFQEKSLRS 2164

Query: 265  EGLEGELTRRSLTYSSW 281
               E  +T    T S W
Sbjct: 2165 TVSESSMTIPEGTGSYW 2181


>sp|Q7RUX3|SLT11_NEUCR Pre-mRNA-splicing factor slt-11 OS=Neurospora crassa (strain ATCC
           24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987)
           GN=slt-11 PE=3 SV=2
          Length = 385

 Score = 32.0 bits (71), Expect = 8.4,   Method: Compositional matrix adjust.
 Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 2/48 (4%)

Query: 245 PSKEHNCIPDEHYVQTLLAQEGLEGELTRRSLTYSSWDLSSSKDHERR 292
           PS   NC+P+  YV+ L    G E +L  R  T  SW  ++ + H R+
Sbjct: 20  PSVCENCLPENPYVKMLKEDYGAECKLCTRPFTVFSW--AADRAHARK 65


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.323    0.135    0.426 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 138,602,228
Number of Sequences: 539616
Number of extensions: 5687168
Number of successful extensions: 13409
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 13406
Number of HSP's gapped (non-prelim): 6
length of query: 374
length of database: 191,569,459
effective HSP length: 119
effective length of query: 255
effective length of database: 127,355,155
effective search space: 32475564525
effective search space used: 32475564525
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 62 (28.5 bits)