Query 017260
Match_columns 374
No_of_seqs 207 out of 795
Neff 6.4
Searched_HMMs 46136
Date Fri Mar 29 07:00:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017260.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017260hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03183 acetylglucosaminyltra 100.0 1.2E-52 2.6E-57 422.2 25.1 246 53-357 76-360 (421)
2 PF02485 Branch: Core-2/I-Bran 100.0 3.2E-48 7E-53 365.4 9.2 224 57-313 1-244 (244)
3 KOG0799 Branching enzyme [Carb 100.0 5.4E-32 1.2E-36 275.7 15.7 224 53-304 101-350 (439)
4 cd06439 CESA_like_1 CESA_like_ 71.0 19 0.00041 33.0 7.8 103 49-166 23-133 (251)
5 TIGR03472 HpnI hopanoid biosyn 68.1 97 0.0021 31.0 12.7 41 52-92 38-79 (373)
6 TIGR03469 HonB hopene-associat 64.9 1.6E+02 0.0034 29.6 14.0 117 52-173 37-167 (384)
7 PRK14583 hmsR N-glycosyltransf 58.1 67 0.0015 33.0 9.6 96 52-155 72-170 (444)
8 PRK11204 N-glycosyltransferase 55.1 72 0.0016 32.1 9.2 42 52-93 51-93 (420)
9 cd04184 GT2_RfbC_Mx_like Myxoc 28.2 2.3E+02 0.005 24.5 7.0 39 55-93 1-41 (202)
10 cd02525 Succinoglycan_BP_ExoA 25.1 4.9E+02 0.011 23.1 10.2 95 56-165 1-104 (249)
11 TIGR03111 glyc2_xrt_Gpos1 puta 23.7 8E+02 0.017 25.1 11.1 41 52-92 46-89 (439)
12 cd04192 GT_2_like_e Subfamily 23.5 2.9E+02 0.0063 24.2 6.9 95 60-165 2-105 (229)
No 1
>PLN03183 acetylglucosaminyltransferase family protein; Provisional
Probab=100.00 E-value=1.2e-52 Score=422.25 Aligned_cols=246 Identities=20% Similarity=0.222 Sum_probs=187.7
Q ss_pred CCCcEEEEEEeC-CCCC-HHHHHHHHhccCCCceEEEEeeCCCCcccC------CCCc---cceeeccc-cCCccceecC
Q 017260 53 QKPKIAFLFIAR-NRLP-LEMVWDKFFKGEESRFSIYVHSRPGFLFSK------GTTR---SIYFLDRQ-VNDSIQVDWG 120 (374)
Q Consensus 53 ~~~kiAfLilah-~~~~-l~rL~~~~f~~~~~~~~IyIHvD~k~~~~~------~~~~---~~~F~nr~-i~~r~~V~WG 120 (374)
.+||+||||++| ++.+ ++||++++| ++ ++.+|||+|++++..+ .... -..|.|.. +.++..|.||
T Consensus 76 ~~~r~AYLI~~h~~d~~~l~RLL~aLY-hp--rN~y~IHlDkKS~~~er~~l~~~v~~~~~~~~~~NV~vl~k~~~V~WG 152 (421)
T PLN03183 76 KLPRFAYLVSGSKGDLEKLWRTLRALY-HP--RNQYVVHLDLESPAEERLELASRVENDPMFSKVGNVYMITKANLVTYR 152 (421)
T ss_pred CCCeEEEEEEecCCcHHHHHHHHHHhc-CC--CceEEEEecCCCChHHHHHHHHHhhccchhhccCcEEEEecceeeccC
Confidence 589999999999 6666 999999987 34 4477899999985321 0000 01222322 3678899999
Q ss_pred CccHHHHHHHHHHHHhc-CCCCCEEEEecCCCccCCChHHH-HHHHhcC-CCccEeeccCCCC---CcccCCc-------
Q 017260 121 GASMIEAERILLRHALA-DPFNDRFVFLSDSCIPLYNFSYT-YNYIMST-STSFVDSFADTKE---GRYNPKM------- 187 (374)
Q Consensus 121 g~SlV~A~l~Ll~~AL~-~~~~d~fvlLSgsD~PL~s~~~I-~~~L~~~-~~sFI~~~~~~~~---~Ry~~~m------- 187 (374)
|+|||+|||++|+.+|+ ..+|||||||||+||||+++++| +.|+..+ ++|||++.++.++ .|+.+.+
T Consensus 153 G~S~V~AtL~~m~~LL~~~~~WDyfinLSGsDyPLkTqdelI~~F~~~nr~~NFI~~~s~~~wk~~~r~~~~i~~pgl~~ 232 (421)
T PLN03183 153 GPTMVANTLHACAILLKRSKDWDWFINLSASDYPLVTQDDLIHTFSTLDRNLNFIEHTSQLGWKEEKRAMPLIIDPGLYS 232 (421)
T ss_pred ChHHHHHHHHHHHHHHhhCCCCCEEEEccCCcccccCHHHHHHHHHhCCCCceeeecccccccchhhhcceEEecCceee
Confidence 99999999999999998 67899999999999999999995 5566664 7999998764332 2222110
Q ss_pred -----------CCCCC-ccccccccceeEecHHHHHHhHcCCc-chHHHHHhhhhcCCccccccCCCCCCCCCCCCccCC
Q 017260 188 -----------APVIP-VHNWRKGSQWAVLTRKHAEIVVNDTT-VFPMFQQHCKRKSLPEFWREHSFPADPSKEHNCIPD 254 (374)
Q Consensus 188 -----------~p~ip-~~~~~~GSqW~~LtR~~ae~iv~d~~-~~~~F~~~~k~~~~~~~w~~~~~~~~~~~~~~~~pD 254 (374)
.+.+| ..++++||+||+|||++|+||+...+ ....+..|+ .++++||
T Consensus 233 ~~ks~~~~~~~~R~~P~~~~lf~GS~W~sLSR~fvey~l~~~dnlpr~ll~y~--------------------~~t~~pd 292 (421)
T PLN03183 233 TNKSDIYWVTPRRSLPTAFKLFTGSAWMVLSRSFVEYCIWGWDNLPRTLLMYY--------------------TNFVSSP 292 (421)
T ss_pred cccchhhhhhhhccCCccccccCCCceEEecHHHHHHHHhcccchHHHHHHHH--------------------hcCCCCc
Confidence 12345 36899999999999999999997543 222233333 3688999
Q ss_pred hhHHHHHHhcCC-CCCCccCCCeEEEecCCCCCCCCCCCCCCccccccCCCCHHHHHHHhhhccccccccccccccccCC
Q 017260 255 EHYVQTLLAQEG-LEGELTRRSLTYSSWDLSSSKDHERRGWHPATYKYADATPLLIQSIKEIDNIYYETEHRREWCSDKG 333 (374)
Q Consensus 255 E~yfqTlL~ns~-~~~~i~n~~LrYi~W~~~~~~~~~~~~~hP~~~~~~D~~~~~~~~i~~~~~~~~~~~~~~~~c~~~g 333 (374)
|+||||+|+|++ |+++++|+|||||+|++ +++.||++|+.+|+ ++|.+
T Consensus 293 E~fFqTVl~NS~~f~~t~vn~nLRyI~W~~-------~~~~~P~~l~~~D~-----~~l~~------------------- 341 (421)
T PLN03183 293 EGYFHTVICNVPEFAKTAVNHDLHYISWDN-------PPKQHPHTLSLNDT-----EKMIA------------------- 341 (421)
T ss_pred hHHHHHHHhhcccccccccCCceeEEecCC-------CCCCCCcccCHHHH-----HHHHh-------------------
Confidence 999999999997 99999999999999995 44569999999998 88873
Q ss_pred CCCccceEEeCCChhhHHHHHhhh
Q 017260 334 KPSSCFLFARKFTRPAALRLLTMS 357 (374)
Q Consensus 334 ~~~~~~lFARKF~~~~~~~Ll~~~ 357 (374)
++++|||||+.+ ..+|+++
T Consensus 342 ---S~~lFARKFd~d--~~vl~~I 360 (421)
T PLN03183 342 ---SGAAFARKFRRD--DPVLDKI 360 (421)
T ss_pred ---CCCccccCCCCC--hHHHHHH
Confidence 788999999975 3444443
No 2
>PF02485 Branch: Core-2/I-Branching enzyme; InterPro: IPR003406 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This is the glycosyltransferase family 14 GT14 from CAZY, a family of two different beta-1,6-N-acetylglucosaminyltransferase enzymes, I-branching enzyme (2.4.1.150 from EC) and core-2 branching enzyme (2.4.1.102 from EC). I-branching enzyme, an integral membrane protein, converts linear into branched poly-N-acetyllactosaminoglycans in the glycosylation pathway, and is responsible for the production of the blood group I-antigen during embryonic development []. Core-2 branching enzyme, also an integral membrane protein, forms crucial side-chain branches in O-glycans in the glycosylation pathway [].; GO: 0008375 acetylglucosaminyltransferase activity, 0016020 membrane; PDB: 3OTK_D 2GAM_A 2GAK_B.
Probab=100.00 E-value=3.2e-48 Score=365.38 Aligned_cols=224 Identities=31% Similarity=0.512 Sum_probs=148.7
Q ss_pred EEEEEEeCC-CCC-HHHHHHHHhccCCCceEEEEeeCCCCcc---c---C-CCCccceeeccccCCccceecCCccHHHH
Q 017260 57 IAFLFIARN-RLP-LEMVWDKFFKGEESRFSIYVHSRPGFLF---S---K-GTTRSIYFLDRQVNDSIQVDWGGASMIEA 127 (374)
Q Consensus 57 iAfLilah~-~~~-l~rL~~~~f~~~~~~~~IyIHvD~k~~~---~---~-~~~~~~~F~nr~i~~r~~V~WGg~SlV~A 127 (374)
|||||+||+ +++ +++|++.++ .+++ .+|||+|++++. + . .....+++ .+++|+.|.|||+|+|+|
T Consensus 1 iAylil~h~~~~~~~~~l~~~l~-~~~~--~f~iHiD~k~~~~~~~~~~~~~~~~~nv~---~v~~r~~v~WG~~S~v~A 74 (244)
T PF02485_consen 1 IAYLILAHKNDPEQLERLLRLLY-HPDN--DFYIHIDKKSPDYFYEEIKKLISCFPNVH---FVPKRVDVRWGGFSLVEA 74 (244)
T ss_dssp EEEEEEESS--HHHHHHHHHHH---TTS--EEEEEE-TTS-HHHHHHHHHHHCT-TTEE---E-SS-----TTSHHHHHH
T ss_pred CEEEEEecCCCHHHHHHHHHHhc-CCCC--EEEEEEcCCCChHHHHHHHHhcccCCcee---ecccccccccCCccHHHH
Confidence 799999988 666 788888875 3444 667999998641 1 1 01112222 246799999999999999
Q ss_pred HHHHHHHHhc-CCCCCEEEEecCCCccCCChHHHHHHHhcC--CCccEeeccCCCC---CcccCC----cCCCCCccccc
Q 017260 128 ERILLRHALA-DPFNDRFVFLSDSCIPLYNFSYTYNYIMST--STSFVDSFADTKE---GRYNPK----MAPVIPVHNWR 197 (374)
Q Consensus 128 ~l~Ll~~AL~-~~~~d~fvlLSgsD~PL~s~~~I~~~L~~~--~~sFI~~~~~~~~---~Ry~~~----m~p~ip~~~~~ 197 (374)
++.||++|++ +++|+|||||||+||||+++++|+++|+.+ +.+|+++...++. .||.+. +.+.++..+++
T Consensus 75 ~l~ll~~al~~~~~~~y~~llSg~D~Pl~s~~~i~~~l~~~~~~~~f~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~ 154 (244)
T PF02485_consen 75 TLNLLREALKRDGDWDYFILLSGQDYPLKSNEEIHEFLESNNGDNNFIESFSDEDPRESGRYNPRIYDPFRPFFRKRTLY 154 (244)
T ss_dssp HHHHHHHHHHH-S---EEEEEETTEEESS-HHHHHHHHHHTTT--B---BEE--GGGG-HHHHEEEETTEEEEEEEE--E
T ss_pred HHHHHHHHHhcCCCCcEEEEcccccccccchHHHHHHHHhcCCCCcceecccccccchhhcceeeeeeeccccccccccc
Confidence 9999999999 889999999999999999999999999996 5788998776532 455543 22223334899
Q ss_pred cccceeEecHHHHHHhHcCCcchHHHHHhhhhcCCccccccCCCCCCCCCCCCccCChhHHHHHHhcC-CCCCCccCCCe
Q 017260 198 KGSQWAVLTRKHAEIVVNDTTVFPMFQQHCKRKSLPEFWREHSFPADPSKEHNCIPDEHYVQTLLAQE-GLEGELTRRSL 276 (374)
Q Consensus 198 ~GSqW~~LtR~~ae~iv~d~~~~~~F~~~~k~~~~~~~w~~~~~~~~~~~~~~~~pDE~yfqTlL~ns-~~~~~i~n~~L 276 (374)
+|||||+|||++|+||+++....+.|+.+|+ ++++|||+||||||+|+ .+++++.++++
T Consensus 155 ~GSqW~~Ltr~~v~~il~~~~~~~~~~~~~~--------------------~~~~pDE~ffqTll~n~~~~~~~~~~~~~ 214 (244)
T PF02485_consen 155 KGSQWFSLTRDFVEYILDDPNYRPKLKKYFR--------------------FSLCPDESFFQTLLNNSGHFKDTIVNRNL 214 (244)
T ss_dssp EE-S--EEEHHHHHHHHH-HHHHHHHHHHT---------------------TSSSGGGTHHHHH--SSGGG-B-TTTSSS
T ss_pred ccceeeEeeHHHHHHhhhhHHHHHHHHHhhc--------------------CccCcchhhHHHhhcccchhcccccCCCE
Confidence 9999999999999999988888888887775 78999999999999999 78889999999
Q ss_pred EEEecCCCCCCCCCCCCCCccccccCCCCHHHHHHHh
Q 017260 277 TYSSWDLSSSKDHERRGWHPATYKYADATPLLIQSIK 313 (374)
Q Consensus 277 rYi~W~~~~~~~~~~~~~hP~~~~~~D~~~~~~~~i~ 313 (374)
|||+|+. ++++||++++..+++++.++.|+
T Consensus 215 r~i~W~~-------~~~~~p~~~~~~~~~~~d~~~~~ 244 (244)
T PF02485_consen 215 RYIDWSR-------RGGCHPKTLTICDLGPEDLPWLK 244 (244)
T ss_dssp EEE-BTG-------T-SS---SSEEEE--GGGHHHH-
T ss_pred EEEECCC-------CCCCCCCeeeeeeeCHHHHHhhC
Confidence 9999983 57899999999999999998875
No 3
>KOG0799 consensus Branching enzyme [Carbohydrate transport and metabolism]
Probab=99.98 E-value=5.4e-32 Score=275.71 Aligned_cols=224 Identities=19% Similarity=0.237 Sum_probs=174.3
Q ss_pred CCCcEEEEEEeCCCCC-HHHHHHHHhccCCCceEEEEeeCCCCccc--CCC-Cccceeecccc-CCccceecCCccHHHH
Q 017260 53 QKPKIAFLFIARNRLP-LEMVWDKFFKGEESRFSIYVHSRPGFLFS--KGT-TRSIYFLDRQV-NDSIQVDWGGASMIEA 127 (374)
Q Consensus 53 ~~~kiAfLilah~~~~-l~rL~~~~f~~~~~~~~IyIHvD~k~~~~--~~~-~~~~~F~nr~i-~~r~~V~WGg~SlV~A 127 (374)
.+..+||+.++|++.+ ++|+++++| +|+|.|+ ||+|.+++.. ... .-..+|.|..| +++..|.|||.|+++|
T Consensus 101 ~~~~~a~~~~v~kd~~~verll~aiY-hPqN~yc--ihvD~~s~~~fk~~~~~L~~cf~NV~v~~k~~~v~~~G~s~l~a 177 (439)
T KOG0799|consen 101 KPFPAAFLRVVYKDYEQVERLLQAIY-HPQNVYC--IHVDAKSPPEFRVAMQQLASCFPNVIVLPKRESVTYGGHSILAA 177 (439)
T ss_pred cccceEEEEeecccHHHHHHHHHHHh-CCcCcce--EEECCCCCHHHHHHHHHHHhcCCceEEeccccceecCCchhhHH
Confidence 3446788888899998 899999999 6888887 9999998532 111 12456666444 4799999999999999
Q ss_pred HHHHHHHHhc-CCCCCEEEEecCCCccCCChHHHHHHHhc-CCCccEeeccCCCC-----CcccC-----------CcCC
Q 017260 128 ERILLRHALA-DPFNDRFVFLSDSCIPLYNFSYTYNYIMS-TSTSFVDSFADTKE-----GRYNP-----------KMAP 189 (374)
Q Consensus 128 ~l~Ll~~AL~-~~~~d~fvlLSgsD~PL~s~~~I~~~L~~-~~~sFI~~~~~~~~-----~Ry~~-----------~m~p 189 (374)
.++||+.+++ ..+|+||++|||+||||+|++||.+.|+. +|.|||++....++ .++.+ .+.+
T Consensus 178 ~l~c~~~Ll~~~~~W~yfinLs~~D~PlkT~~elv~i~~~L~g~N~i~~~~~~~~~~~~~~k~~~~~~~~~~~~s~~~~~ 257 (439)
T KOG0799|consen 178 HLNCLADLLKLSGDWDYFINLSNSDYPLKTNDELVRIFKILRGANFVEHTSEIGWKLNRKAKWDIIDLKYFRNKSPLPWV 257 (439)
T ss_pred HHHHHHHHHhcCCCCceeeeccCCCcccCCHHHHHHHHHHcCCcccccCcccccHHHhcccCCcccccchheecCCCccc
Confidence 9999999998 55799999999999999999999999998 89999998765432 11110 1112
Q ss_pred CCC-ccccccccceeEecHHHHHHhHcCCcchHHHHHhhhhcCCccccccCCCCCCCCCCCCccCChhHHHHHHhcCCCC
Q 017260 190 VIP-VHNWRKGSQWAVLTRKHAEIVVNDTTVFPMFQQHCKRKSLPEFWREHSFPADPSKEHNCIPDEHYVQTLLAQEGLE 268 (374)
Q Consensus 190 ~ip-~~~~~~GSqW~~LtR~~ae~iv~d~~~~~~F~~~~k~~~~~~~w~~~~~~~~~~~~~~~~pDE~yfqTlL~ns~~~ 268 (374)
.+| ..++++||.|++|+|.+|+|++.+... ..+.++++ +++.|||+||+||++|+ +.
T Consensus 258 ~lp~~~ki~~Gs~~~~LsR~fv~y~i~~~~~-~~ll~~~~--------------------~t~~~dE~f~~Tl~~n~-~~ 315 (439)
T KOG0799|consen 258 ILPTALKLFKGSAWVSLSRAFVEYLISGNLP-RTLLMYYN--------------------NTYSPDEGFFHTLQCNP-FG 315 (439)
T ss_pred cCCCceEEEecceeEEEeHHHHHHHhcCccH-HHHHHHHh--------------------CccCcchhhhHhhhccc-cC
Confidence 345 468999999999999999999998444 34444443 78999999999999999 76
Q ss_pred CCccCCC--eEEEecCCCCCCCCCCCCCCccccccCCC
Q 017260 269 GELTRRS--LTYSSWDLSSSKDHERRGWHPATYKYADA 304 (374)
Q Consensus 269 ~~i~n~~--LrYi~W~~~~~~~~~~~~~hP~~~~~~D~ 304 (374)
....+.+ +||+.|+... ++ ..+.||..+...|.
T Consensus 316 ~~g~~~~~~lr~~~W~~~~-~~--~~~~~c~~~~~~~~ 350 (439)
T KOG0799|consen 316 MPGVFNDECLRYTNWDRKD-VD--PPKQHCHSLTVRDF 350 (439)
T ss_pred CCCcccchhhcceeccccc-cc--ccccCCcccccccc
Confidence 6666777 9999999633 22 25668888887765
No 4
>cd06439 CESA_like_1 CESA_like_1 is a member of the cellulose synthase (CESA) superfamily. This is a subfamily of cellulose synthase (CESA) superfamily. CESA superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members of the superfamily include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins.
Probab=70.98 E-value=19 Score=33.03 Aligned_cols=103 Identities=15% Similarity=0.067 Sum_probs=61.5
Q ss_pred CCCCCCCcEEEEEEeCCCCC-HHHHHHHHhccCC--CceEEEEeeCCCCccc-----CCCCccceeeccccCCccceecC
Q 017260 49 PRFVQKPKIAFLFIARNRLP-LEMVWDKFFKGEE--SRFSIYVHSRPGFLFS-----KGTTRSIYFLDRQVNDSIQVDWG 120 (374)
Q Consensus 49 ~~~~~~~kiAfLilah~~~~-l~rL~~~~f~~~~--~~~~IyIHvD~k~~~~-----~~~~~~~~F~nr~i~~r~~V~WG 120 (374)
+.....++++.+|.+|++.. +.++++.+..... ..+.|+|..|...+-. +.......+. ... .
T Consensus 23 ~~~~~~~~isVvip~~n~~~~l~~~l~si~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~v~~i----~~~-----~ 93 (251)
T cd06439 23 PDPAYLPTVTIIIPAYNEEAVIEAKLENLLALDYPRDRLEIIVVSDGSTDGTAEIAREYADKGVKLL----RFP-----E 93 (251)
T ss_pred CCCCCCCEEEEEEecCCcHHHHHHHHHHHHhCcCCCCcEEEEEEECCCCccHHHHHHHHhhCcEEEE----EcC-----C
Confidence 33466789999999999987 8888888765322 2378888888765311 0000011111 110 1
Q ss_pred CccHHHHHHHHHHHHhcCCCCCEEEEecCCCccCCChHHHHHHHhc
Q 017260 121 GASMIEAERILLRHALADPFNDRFVFLSDSCIPLYNFSYTYNYIMS 166 (374)
Q Consensus 121 g~SlV~A~l~Ll~~AL~~~~~d~fvlLSgsD~PL~s~~~I~~~L~~ 166 (374)
..+...|-..+++.| ..||++++-+.|+|- .+.+.+.+..
T Consensus 94 ~~g~~~a~n~gi~~a----~~d~i~~lD~D~~~~--~~~l~~l~~~ 133 (251)
T cd06439 94 RRGKAAALNRALALA----TGEIVVFTDANALLD--PDALRLLVRH 133 (251)
T ss_pred CCChHHHHHHHHHHc----CCCEEEEEccccCcC--HHHHHHHHHH
Confidence 224556655566654 238999999999985 4555555443
No 5
>TIGR03472 HpnI hopanoid biosynthesis associated glycosyl transferase protein HpnI. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The member of this clade from Acidithiobacillus ferrooxidans ATCC 23270 (AFE_0974) is found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. Similarly, in Ralstonia eutropha JMP134 (Reut_B4902) this gene is adjacent to HpnAB, IspH and HpnH (TIGR03470), although SHC itself is elsewhere in the genome. Notably, this gene (here named HpnI) and three others form a conserved set (HpnIJKL) which occur in a subset of all genomes containing the SHC enzyme. This relationship was discerned using the method of partial phylogenetic profiling. This group includes Zymomonas mobilis, the organism where the initial hopano
Probab=68.06 E-value=97 Score=30.97 Aligned_cols=41 Identities=15% Similarity=0.162 Sum_probs=31.2
Q ss_pred CCCCcEEEEEEeCCCCC-HHHHHHHHhccCCCceEEEEeeCC
Q 017260 52 VQKPKIAFLFIARNRLP-LEMVWDKFFKGEESRFSIYVHSRP 92 (374)
Q Consensus 52 ~~~~kiAfLilah~~~~-l~rL~~~~f~~~~~~~~IyIHvD~ 92 (374)
...+++..+|-+|++.+ +++.++++.+.+.+.+.|.|=.|.
T Consensus 38 ~~~p~VSViiP~~nee~~l~~~L~Sl~~q~Yp~~EIivvdd~ 79 (373)
T TIGR03472 38 RAWPPVSVLKPLHGDEPELYENLASFCRQDYPGFQMLFGVQD 79 (373)
T ss_pred CCCCCeEEEEECCCCChhHHHHHHHHHhcCCCCeEEEEEeCC
Confidence 34578999999999977 899999987655556888774443
No 6
>TIGR03469 HonB hopene-associated glycosyltransferase HpnB. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. Indeed, the members of this family appear to never be found in a genome lacking squalene-hopene cyclase (SHC), although not all genomes encoding SHC have this glycosyl transferase. In the organism Zymomonas mobilis the linkage of this gene to hopanoid biosynthesis has been noted and the gene named HpnB. Hopanoids are known to feature polar glycosyl head groups in many organisms.
Probab=64.91 E-value=1.6e+02 Score=29.59 Aligned_cols=117 Identities=10% Similarity=0.053 Sum_probs=63.4
Q ss_pred CCCCcEEEEEEeCCCCC-HHHHHHHHhccCCC-ceEEEEeeCCCCcc-----cC---CCCc-cceeeccccC-Cccceec
Q 017260 52 VQKPKIAFLFIARNRLP-LEMVWDKFFKGEES-RFSIYVHSRPGFLF-----SK---GTTR-SIYFLDRQVN-DSIQVDW 119 (374)
Q Consensus 52 ~~~~kiAfLilah~~~~-l~rL~~~~f~~~~~-~~~IyIHvD~k~~~-----~~---~~~~-~~~F~nr~i~-~r~~V~W 119 (374)
+..|++..+|-++++.+ +.++++.+.+.+.+ .+.|.|=-|.+.+- +. ..+. ..+- .+. +..+..|
T Consensus 37 ~~~p~VSVIIpa~Ne~~~L~~~L~sL~~q~yp~~~eIIVVDd~StD~T~~i~~~~~~~~~~~~~i~---vi~~~~~~~g~ 113 (384)
T TIGR03469 37 EAWPAVVAVVPARNEADVIGECVTSLLEQDYPGKLHVILVDDHSTDGTADIARAAARAYGRGDRLT---VVSGQPLPPGW 113 (384)
T ss_pred CCCCCEEEEEecCCcHhHHHHHHHHHHhCCCCCceEEEEEeCCCCCcHHHHHHHHHHhcCCCCcEE---EecCCCCCCCC
Confidence 46688999999999987 89999998653322 46666544443321 00 0000 0111 111 1222334
Q ss_pred CCccHHHHHHHHHHHHhc-CCCCCEEEEecCCCccCCCh-HHHHHHHhcCCCccEe
Q 017260 120 GGASMIEAERILLRHALA-DPFNDRFVFLSDSCIPLYNF-SYTYNYIMSTSTSFVD 173 (374)
Q Consensus 120 Gg~SlV~A~l~Ll~~AL~-~~~~d~fvlLSgsD~PL~s~-~~I~~~L~~~~~sFI~ 173 (374)
+ ....|.-.+++.|-. +++.++++++-+.+.|-.+. ..+.+.+..++...+.
T Consensus 114 ~--Gk~~A~n~g~~~A~~~~~~gd~llflDaD~~~~p~~l~~lv~~~~~~~~~~vs 167 (384)
T TIGR03469 114 S--GKLWAVSQGIAAARTLAPPADYLLLTDADIAHGPDNLARLVARARAEGLDLVS 167 (384)
T ss_pred c--chHHHHHHHHHHHhccCCCCCEEEEECCCCCCChhHHHHHHHHHHhCCCCEEE
Confidence 4 455666677777754 33467887777777653222 3444444444544443
No 7
>PRK14583 hmsR N-glycosyltransferase; Provisional
Probab=58.13 E-value=67 Score=33.00 Aligned_cols=96 Identities=9% Similarity=0.004 Sum_probs=53.2
Q ss_pred CCCCcEEEEEEeCCCCC-HHHHHHHHhccCCCceEEEEeeCCCCcccCCCCccceeeccccCCccceec--CCccHHHHH
Q 017260 52 VQKPKIAFLFIARNRLP-LEMVWDKFFKGEESRFSIYVHSRPGFLFSKGTTRSIYFLDRQVNDSIQVDW--GGASMIEAE 128 (374)
Q Consensus 52 ~~~~kiAfLilah~~~~-l~rL~~~~f~~~~~~~~IyIHvD~k~~~~~~~~~~~~F~nr~i~~r~~V~W--Gg~SlV~A~ 128 (374)
+..|+++.+|-+|++.. +.+.++++.+.+.+.+.|+|--|.+.+-....- .. +... .+++.+.. +.-+.-.
T Consensus 72 ~~~p~vsViIP~yNE~~~i~~~l~sll~q~yp~~eIivVdDgs~D~t~~~~-~~-~~~~--~~~v~vv~~~~n~Gka~-- 145 (444)
T PRK14583 72 KGHPLVSILVPCFNEGLNARETIHAALAQTYTNIEVIAINDGSSDDTAQVL-DA-LLAE--DPRLRVIHLAHNQGKAI-- 145 (444)
T ss_pred CCCCcEEEEEEeCCCHHHHHHHHHHHHcCCCCCeEEEEEECCCCccHHHHH-HH-HHHh--CCCEEEEEeCCCCCHHH--
Confidence 34578999999999977 888888876655556887776555432100000 00 0000 01122211 1112222
Q ss_pred HHHHHHHhcCCCCCEEEEecCCCccCC
Q 017260 129 RILLRHALADPFNDRFVFLSDSCIPLY 155 (374)
Q Consensus 129 l~Ll~~AL~~~~~d~fvlLSgsD~PL~ 155 (374)
.+..++.....|+++.+-+.+.|=.
T Consensus 146 --AlN~gl~~a~~d~iv~lDAD~~~~~ 170 (444)
T PRK14583 146 --ALRMGAAAARSEYLVCIDGDALLDK 170 (444)
T ss_pred --HHHHHHHhCCCCEEEEECCCCCcCH
Confidence 3344444456799999999998743
No 8
>PRK11204 N-glycosyltransferase; Provisional
Probab=55.10 E-value=72 Score=32.12 Aligned_cols=42 Identities=10% Similarity=0.116 Sum_probs=32.0
Q ss_pred CCCCcEEEEEEeCCCCC-HHHHHHHHhccCCCceEEEEeeCCC
Q 017260 52 VQKPKIAFLFIARNRLP-LEMVWDKFFKGEESRFSIYVHSRPG 93 (374)
Q Consensus 52 ~~~~kiAfLilah~~~~-l~rL~~~~f~~~~~~~~IyIHvD~k 93 (374)
...|+++.+|-+|++.+ +.+.++++.+.....+.|.|=-|..
T Consensus 51 ~~~p~vsViIp~yne~~~i~~~l~sl~~q~yp~~eiiVvdD~s 93 (420)
T PRK11204 51 KEYPGVSILVPCYNEGENVEETISHLLALRYPNYEVIAINDGS 93 (420)
T ss_pred CCCCCEEEEEecCCCHHHHHHHHHHHHhCCCCCeEEEEEECCC
Confidence 45678999999999977 8899988876544567877755543
No 9
>cd04184 GT2_RfbC_Mx_like Myxococcus xanthus RfbC like proteins are required for O-antigen biosynthesis. The rfbC gene encodes a predicted protein of 1,276 amino acids, which is required for O-antigen biosynthesis in Myxococcus xanthus. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=28.16 E-value=2.3e+02 Score=24.52 Aligned_cols=39 Identities=10% Similarity=0.152 Sum_probs=27.9
Q ss_pred CcEEEEEEeCCCC-C-HHHHHHHHhccCCCceEEEEeeCCC
Q 017260 55 PKIAFLFIARNRL-P-LEMVWDKFFKGEESRFSIYVHSRPG 93 (374)
Q Consensus 55 ~kiAfLilah~~~-~-l~rL~~~~f~~~~~~~~IyIHvD~k 93 (374)
|++.++|.++++. + +++.++++.......+.|.|--|..
T Consensus 1 p~vsiii~~~n~~~~~l~~~l~sl~~q~~~~~eiivvd~gs 41 (202)
T cd04184 1 PLISIVMPVYNTPEKYLREAIESVRAQTYPNWELCIADDAS 41 (202)
T ss_pred CeEEEEEecccCcHHHHHHHHHHHHhCcCCCeEEEEEeCCC
Confidence 4688999999997 7 8999999875444446665554443
No 10
>cd02525 Succinoglycan_BP_ExoA ExoA is involved in the biosynthesis of succinoglycan. Succinoglycan Biosynthesis Protein ExoA catalyzes the formation of a beta-1,3 linkage of the second sugar (glucose) of the succinoglycan with the galactose on the lipid carrie. Succinoglycan is an acidic exopolysaccharide that is important for invasion of the nodules. Succinoglycan is a high-molecular-weight polymer composed of repeating octasaccharide units. These units are synthesized on membrane-bound isoprenoid lipid carriers, beginning with galactose followed by seven glucose molecules, and modified by the addition of acetate, succinate, and pyruvate. ExoA is a membrane protein with a transmembrance domain at c-terminus.
Probab=25.14 E-value=4.9e+02 Score=23.12 Aligned_cols=95 Identities=11% Similarity=0.081 Sum_probs=52.7
Q ss_pred cEEEEEEeCCCCC-HHHHHHHHhccCC--CceEEEEeeCCCCcc-----cCC-CCccceeeccccCCccceecCCccHHH
Q 017260 56 KIAFLFIARNRLP-LEMVWDKFFKGEE--SRFSIYVHSRPGFLF-----SKG-TTRSIYFLDRQVNDSIQVDWGGASMIE 126 (374)
Q Consensus 56 kiAfLilah~~~~-l~rL~~~~f~~~~--~~~~IyIHvD~k~~~-----~~~-~~~~~~F~nr~i~~r~~V~WGg~SlV~ 126 (374)
+++.+|.++++.+ +.++++.+.+... ..+.|.|--|.+.+- +.. .....+.. +... +-+.-.
T Consensus 1 ~~sIiip~~n~~~~l~~~l~sl~~q~~~~~~~evivvd~~s~d~~~~~~~~~~~~~~~v~~---i~~~------~~~~~~ 71 (249)
T cd02525 1 FVSIIIPVRNEEKYIEELLESLLNQSYPKDLIEIIVVDGGSTDGTREIVQEYAAKDPRIRL---IDNP------KRIQSA 71 (249)
T ss_pred CEEEEEEcCCchhhHHHHHHHHHhccCCCCccEEEEEeCCCCccHHHHHHHHHhcCCeEEE---EeCC------CCCchH
Confidence 4678899999887 8999988764322 456777665554321 000 00001111 1111 112224
Q ss_pred HHHHHHHHHhcCCCCCEEEEecCCCccCCChHHHHHHHh
Q 017260 127 AERILLRHALADPFNDRFVFLSDSCIPLYNFSYTYNYIM 165 (374)
Q Consensus 127 A~l~Ll~~AL~~~~~d~fvlLSgsD~PL~s~~~I~~~L~ 165 (374)
|--.+++.| ..+|+++|.+.|.| +...+...+.
T Consensus 72 a~N~g~~~a----~~d~v~~lD~D~~~--~~~~l~~~~~ 104 (249)
T cd02525 72 GLNIGIRNS----RGDIIIRVDAHAVY--PKDYILELVE 104 (249)
T ss_pred HHHHHHHHh----CCCEEEEECCCccC--CHHHHHHHHH
Confidence 444444444 57999999999986 5566666553
No 11
>TIGR03111 glyc2_xrt_Gpos1 putative glycosyltransferase TIGR03111. Members of this protein family probable glycosyltransferases of family 2, whose genes are near those for Gram-positive proteins (TIGR03110) related to the proposed exosortase (TIGR02602).
Probab=23.68 E-value=8e+02 Score=25.08 Aligned_cols=41 Identities=12% Similarity=0.134 Sum_probs=28.3
Q ss_pred CCCCcEEEEEEeCCCCC-HHHHHHHHhccC--CCceEEEEeeCC
Q 017260 52 VQKPKIAFLFIARNRLP-LEMVWDKFFKGE--ESRFSIYVHSRP 92 (374)
Q Consensus 52 ~~~~kiAfLilah~~~~-l~rL~~~~f~~~--~~~~~IyIHvD~ 92 (374)
...|+++.+|-+|++.+ +.++++++.+.+ ...+.|+|=-|.
T Consensus 46 ~~~P~vsVIIP~yNe~~~l~~~l~sl~~q~yp~~~~eIiVVDd~ 89 (439)
T TIGR03111 46 GKLPDITIIIPVYNSEDTLFNCIESIYNQTYPIELIDIILANNQ 89 (439)
T ss_pred CCCCCEEEEEEeCCChHHHHHHHHHHHhcCCCCCCeEEEEEECC
Confidence 44578999999999987 888998876432 223455554443
No 12
>cd04192 GT_2_like_e Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=23.48 E-value=2.9e+02 Score=24.25 Aligned_cols=95 Identities=12% Similarity=0.138 Sum_probs=48.3
Q ss_pred EEEeCCCCC-HHHHHHHHhccCCCc--eEEEEeeCCCCccc-CC-----CCccceeeccccCCccceecCCccHHHHHHH
Q 017260 60 LFIARNRLP-LEMVWDKFFKGEESR--FSIYVHSRPGFLFS-KG-----TTRSIYFLDRQVNDSIQVDWGGASMIEAERI 130 (374)
Q Consensus 60 Lilah~~~~-l~rL~~~~f~~~~~~--~~IyIHvD~k~~~~-~~-----~~~~~~F~nr~i~~r~~V~WGg~SlV~A~l~ 130 (374)
+|.++++.. +++.++++....... +.|+|--|.+..-. +. ......+ +.+. .... ++.....|-..
T Consensus 2 iip~~n~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~v--~~~~-~~~~--~~~g~~~a~n~ 76 (229)
T cd04192 2 VIAARNEAENLPRLLQSLSALDYPKEKFEVILVDDHSTDGTVQILEFAAAKPNFQL--KILN-NSRV--SISGKKNALTT 76 (229)
T ss_pred EEEecCcHHHHHHHHHHHHhCCCCCCceEEEEEcCCCCcChHHHHHHHHhCCCcce--EEee-ccCc--ccchhHHHHHH
Confidence 567788877 889998876543333 77877766643210 00 0000000 0011 0000 11223333323
Q ss_pred HHHHHhcCCCCCEEEEecCCCccCCChHHHHHHHh
Q 017260 131 LLRHALADPFNDRFVFLSDSCIPLYNFSYTYNYIM 165 (374)
Q Consensus 131 Ll~~AL~~~~~d~fvlLSgsD~PL~s~~~I~~~L~ 165 (374)
++ +....++++++-+.|+| ..+.|.+.+.
T Consensus 77 g~----~~~~~d~i~~~D~D~~~--~~~~l~~l~~ 105 (229)
T cd04192 77 AI----KAAKGDWIVTTDADCVV--PSNWLLTFVA 105 (229)
T ss_pred HH----HHhcCCEEEEECCCccc--CHHHHHHHHH
Confidence 33 32346899999999977 4566666554
Done!