Query 017260
Match_columns 374
No_of_seqs 207 out of 795
Neff 6.4
Searched_HMMs 29240
Date Mon Mar 25 11:34:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017260.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017260hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2gak_A Beta-1,6-N-acetylglucos 100.0 1.3E-52 4.3E-57 421.2 15.2 275 29-359 62-379 (391)
2 1qg8_A Protein (spore coat pol 51.7 1.1E+02 0.0037 26.4 10.4 113 55-172 1-122 (255)
3 2fy7_A Beta-1,4-galactosyltran 43.2 80 0.0027 29.2 8.4 80 53-157 63-146 (287)
4 2z86_A Chondroitin synthase; G 18.9 6.8E+02 0.023 24.9 11.0 103 55-168 93-203 (625)
5 3bcv_A Putative glycosyltransf 18.0 2.7E+02 0.0093 23.4 6.8 100 54-166 4-111 (240)
6 4fix_A UDP-galactofuranosyl tr 13.5 1.9E+02 0.0066 30.0 5.2 113 52-167 177-296 (657)
7 1iio_A Conserved hypothetical 12.8 50 0.0017 25.5 0.3 40 113-166 41-80 (84)
8 3q80_A 2-C-methyl-D-erythritol 8.9 3.8E+02 0.013 23.5 5.0 88 66-166 34-124 (231)
9 1vpa_A 2-C-methyl-D-erythritol 8.4 4.9E+02 0.017 22.0 5.4 86 69-166 44-131 (234)
10 3ku3_A Hemagglutinin HA1 chain 8.3 1.6E+02 0.0054 28.2 2.1 62 116-177 51-121 (327)
No 1
>2gak_A Beta-1,6-N-acetylglucosaminyltransferase; glycoprotein, CIS-peptide, dimer; HET: NAG; 2.00A {Mus musculus} PDB: 2gam_A* 3otk_A*
Probab=100.00 E-value=1.3e-52 Score=421.18 Aligned_cols=275 Identities=12% Similarity=0.114 Sum_probs=207.7
Q ss_pred HHHHHHHHhhhhcccccCCCCCCCCCCcEEEEEEeCCCCC-HHHHHHHHhccCCCceEEEEeeCCCCccc--CCCC-ccc
Q 017260 29 FCFGSLVLMQCQYTRIMSLRPRFVQKPKIAFLFIARNRLP-LEMVWDKFFKGEESRFSIYVHSRPGFLFS--KGTT-RSI 104 (374)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~kiAfLilah~~~~-l~rL~~~~f~~~~~~~~IyIHvD~k~~~~--~~~~-~~~ 104 (374)
.|-......++ .+.++|.+ +.+|||||||++|++++ +++|+++++. +.+.||||+|++++.. .... ...
T Consensus 62 ~C~~~~~~~~~-~~~pl~~~---e~~~kiAflil~h~d~~~l~rll~~ly~---p~n~y~IHvD~ks~~~~~~~~~~~~~ 134 (391)
T 2gak_A 62 DCASFIRTRKY-IVEPLTKE---EVGFPIAYSIVVHHKIEMLDRLLRAIYM---PQNFYCIHVDRKAEESFLAAVQGIAS 134 (391)
T ss_dssp SHHHHHHHHTC-CCSCSCHH---HHTSCEEEEEEECSCHHHHHHHHHHHCC---TTSEEEEEECTTSCHHHHHHHHHHHH
T ss_pred Cchhhhhcccc-cCCCCCcc---ccCCCEEEEEEecCCHHHHHHHHHHHhC---CCCeEEEEEeCCCCHHHHHHHHHHHh
Confidence 45544332222 33444443 56799999999999988 8999999762 4457889999997521 1111 123
Q ss_pred eeecccc-CCccceecCCccHHHHHHHHHHHHhc-CCCCCEEEEecCCCccCCChHHHHHHHhc-CCCccEeeccCCCC-
Q 017260 105 YFLDRQV-NDSIQVDWGGASMIEAERILLRHALA-DPFNDRFVFLSDSCIPLYNFSYTYNYIMS-TSTSFVDSFADTKE- 180 (374)
Q Consensus 105 ~F~nr~i-~~r~~V~WGg~SlV~A~l~Ll~~AL~-~~~~d~fvlLSgsD~PL~s~~~I~~~L~~-~~~sFI~~~~~~~~- 180 (374)
+|.|+.| .+|+.|.|||+|||+|+++||+.||+ +++|+|||||||+||||+|+++|++||+. +++|||++..++++
T Consensus 135 ~f~NV~v~~~~~~v~WGg~S~v~A~l~ll~~aL~~~~~w~yfilLSgsD~PLkt~~~i~~~l~~~~~~nFIe~~~~~~~~ 214 (391)
T 2gak_A 135 CFDNVFVASQLESVVYASWTRVKADLNCMKDLYRMNANWKYLINLCGMDFPIKTNLEIVRKLKCSTGENNLETEKMPPNK 214 (391)
T ss_dssp TCTTEEECSSCCCCCTTSHHHHHHHHHHHHHHHHHCSCCCEEEEEETTCEESSCHHHHHHHHHHTTTCCBCCBEECCGGG
T ss_pred cCCCEEEeccCcccccCCchHHHHHHHHHHHHHhcCCCCCEEEEecCCCccccCHHHHHHHHHhcCCCceeeccCCCccc
Confidence 4555554 47999999999999999999999998 55899999999999999999999999998 68999999876543
Q ss_pred -Cccc--CC----------cC-CCCC-ccccccccceeEecHHHHHHhHcCCcchHHHHHhhhhcCCccccccCCCCCCC
Q 017260 181 -GRYN--PK----------MA-PVIP-VHNWRKGSQWAVLTRKHAEIVVNDTTVFPMFQQHCKRKSLPEFWREHSFPADP 245 (374)
Q Consensus 181 -~Ry~--~~----------m~-p~ip-~~~~~~GSqW~~LtR~~ae~iv~d~~~~~~F~~~~k~~~~~~~w~~~~~~~~~ 245 (374)
.|+. +. +. +.+| ..++++|||||+|||++|++|++|.. .+.|.+||+
T Consensus 215 ~~R~~~~~~~~~~~l~~~~~~k~~~P~~~~~~~GSqW~~LtR~~v~~vl~d~~-~~~~~~~~k----------------- 276 (391)
T 2gak_A 215 EERWKKRYAVVDGKLTNTGIVKAPPPLKTPLFSGSAYFVVTREYVGYVLENEN-IQKLMEWAQ----------------- 276 (391)
T ss_dssp SHHHHEEEEEETTEEEEEEEECCCCSCSSCCEECCSCCEEEHHHHHHHHHCHH-HHHHHHHHT-----------------
T ss_pred ccceEeeeeccccceeeecccccCCccccceecccceeEecHHHHHHHHhCCc-HHHHHHHHc-----------------
Confidence 3332 11 11 1234 46899999999999999999999854 567777886
Q ss_pred CCCCCccCChhHHHHHHhcCCCCCC----------ccCCCeEEEecCCCCCCCCCCCCCCcc----------ccccCCCC
Q 017260 246 SKEHNCIPDEHYVQTLLAQEGLEGE----------LTRRSLTYSSWDLSSSKDHERRGWHPA----------TYKYADAT 305 (374)
Q Consensus 246 ~~~~~~~pDE~yfqTlL~ns~~~~~----------i~n~~LrYi~W~~~~~~~~~~~~~hP~----------~~~~~D~~ 305 (374)
++|+|||+|||||+.++++.+. .+++++|||+|+...+.-+ +|+.||. +|+.+|+
T Consensus 277 ---~t~~pDE~ffqTll~~~~~pg~~~~~~~~~~~~~~~~lr~i~W~~~~g~~~-~G~p~p~c~~~~~~~~C~~~~~Dl- 351 (391)
T 2gak_A 277 ---DTYSPDEFLWATIQRIPEVPGSFPSSNKYDLSDMNAIARFVKWQYFEGDVS-NGAPYPPCSGVHVRSVCVFGAGDL- 351 (391)
T ss_dssp ---TSSSGGGTHHHHHTTSTTSTTCCCSSGGGCBCTTTSSSEEECBTTTCSCGG-GTCSSCCCSSEEETTEEECCGGGH-
T ss_pred ---CCcCCchhHHHHHhhccCCCCccccccccccccccCceEEEEecccCCccc-cCCCCCCCccceecceeeecHHHH-
Confidence 8999999999999998765443 3478999999985321111 2334676 6777776
Q ss_pred HHHHHHHhhhccccccccccccccccCCCCCccceEEeCCChhhHHHHHhhhhc
Q 017260 306 PLLIQSIKEIDNIYYETEHRREWCSDKGKPSSCFLFARKFTRPAALRLLTMSVL 359 (374)
Q Consensus 306 ~~~~~~i~~~~~~~~~~~~~~~~c~~~g~~~~~~lFARKF~~~~~~~Ll~~~~~ 359 (374)
+.|+ .+++||||||+++++..|++.++.
T Consensus 352 ----~~l~----------------------~s~~lFARKF~~~~d~~~l~~l~~ 379 (391)
T 2gak_A 352 ----SWML----------------------RQHHLFANKFDMDVDPFAIQCLDE 379 (391)
T ss_dssp ----HHHT----------------------TSCCSEEECCCTTTCHHHHHHHHH
T ss_pred ----HHHH----------------------hCCCceEEccCCccCHHHHHHHHH
Confidence 7776 379999999999999999988764
No 2
>1qg8_A Protein (spore coat polysaccharide biosynthesis P SPSA); glycosyltransferase, transferase; 1.50A {Bacillus subtilis} SCOP: c.68.1.1 PDB: 1h7q_A* 1h7l_A 1qgq_A* 1qgs_A*
Probab=51.65 E-value=1.1e+02 Score=26.41 Aligned_cols=113 Identities=8% Similarity=0.108 Sum_probs=61.6
Q ss_pred CcEEEEEEeCCCCC-HHHHHHHHhccCCCceEEEEeeCCCCc-----ccCCC-CccceeeccccCCccceecCCccHHHH
Q 017260 55 PKIAFLFIARNRLP-LEMVWDKFFKGEESRFSIYVHSRPGFL-----FSKGT-TRSIYFLDRQVNDSIQVDWGGASMIEA 127 (374)
Q Consensus 55 ~kiAfLilah~~~~-l~rL~~~~f~~~~~~~~IyIHvD~k~~-----~~~~~-~~~~~F~nr~i~~r~~V~WGg~SlV~A 127 (374)
|++..+|.+++... +.+.++++.......+.|.|--|...+ ++... .....++... .+.....+...+...|
T Consensus 1 p~vSViIp~yn~~~~l~~~l~Sl~~q~~~~~eiivvDd~S~d~t~~~~~~~~~~~~i~~i~~~-~~~~~~~~~n~G~~~a 79 (255)
T 1qg8_A 1 PKVSVIMTSYNKSDYVAKSISSILSQTFSDFELFIMDDNSNEETLNVIRPFLNDNRVRFYQSD-ISGVKERTEKTRYAAL 79 (255)
T ss_dssp CCEEEEEEESSCTTTHHHHHHHHHTCSCCCEEEEEEECSCCHHHHHHHGGGGGSTTEEEEECC-CCSHHHHHSSCHHHHH
T ss_pred CeEEEEEEcCCCHHHHHHHHHHHHhccCCceEEEEEECCCCchHHHHHHHHhhcCCEEEEecc-cccccccccccCHHHH
Confidence 68999999999887 899999987544455676665554432 11110 0111111000 0000011124556666
Q ss_pred HHHHHHHHhcCCCCCEEEEecCCCccCCC-hHHHHHHHhcC-CCccE
Q 017260 128 ERILLRHALADPFNDRFVFLSDSCIPLYN-FSYTYNYIMST-STSFV 172 (374)
Q Consensus 128 ~l~Ll~~AL~~~~~d~fvlLSgsD~PL~s-~~~I~~~L~~~-~~sFI 172 (374)
--.+++.| .-+|+++|-+.|++--+ .+.+.+.+.++ +...+
T Consensus 80 ~N~gi~~a----~g~~i~~lD~Dd~~~~~~l~~~~~~~~~~~~~~~v 122 (255)
T 1qg8_A 80 INQAIEMA----EGEYITYATDDNIYMPDRLLKMVRELDTHPEKAVI 122 (255)
T ss_dssp HHHHHHHC----CCSEEEEEETTEEECTTHHHHHHHHHHHCTTCCEE
T ss_pred HHHHHHHc----CCCEEEEeCCCCccChHHHHHHHHHHHhCCCceEE
Confidence 66666665 45899999998887433 23445555554 33333
No 3
>2fy7_A Beta-1,4-galactosyltransferase 1; M339H mutant, APO enzyme; HET: PGE; 1.70A {Homo sapiens} PDB: 2aec_A* 2aes_A* 2ae7_A* 2ah9_A* 2agd_A* 2fya_A* 2fyb_A* 3ee5_A* 2fyc_B* 1tw1_A* 1tw5_A* 1tvy_A* 1nmm_B* 1o0r_A* 1yro_B* 1nf5_B* 1nhe_B* 1nkh_B* 1nqi_B* 1nwg_B* ...
Probab=43.16 E-value=80 Score=29.21 Aligned_cols=80 Identities=21% Similarity=0.200 Sum_probs=51.5
Q ss_pred CCCcEEEEEEeCCCCC-HHHHHHHHh---ccCCCceEEEEeeCCCCcccCCCCccceeeccccCCccceecCCccHHHHH
Q 017260 53 QKPKIAFLFIARNRLP-LEMVWDKFF---KGEESRFSIYVHSRPGFLFSKGTTRSIYFLDRQVNDSIQVDWGGASMIEAE 128 (374)
Q Consensus 53 ~~~kiAfLilah~~~~-l~rL~~~~f---~~~~~~~~IyIHvD~k~~~~~~~~~~~~F~nr~i~~r~~V~WGg~SlV~A~ 128 (374)
..++++.+|.+++... +.++++.+. ......|.|+|--|. .+ ++++...|.
T Consensus 63 ~~~~VSIIIP~yN~~~~L~~~L~sl~~~l~q~~~~~EIiVVdds-~d------------------------~~f~~a~a~ 117 (287)
T 2fy7_A 63 SPHKVAIIIPFRNRQEHLKYWLYYLHPVLQRQQLDYGIYVINQA-GD------------------------TIFNRAKLL 117 (287)
T ss_dssp CSCEEEEEEEESSCHHHHHHHHHHHHHHHHHTTCEEEEEEEEEC-SS------------------------SCCCHHHHH
T ss_pred cCCcEEEEEeeCCCHHHHHHHHHHHHHHHHHhcCCceEEEEEeC-CC------------------------Cccchhhhh
Confidence 3579999999999987 888888875 223445666543331 10 112223333
Q ss_pred HHHHHHHhcCCCCCEEEEecCCCccCCCh
Q 017260 129 RILLRHALADPFNDRFVFLSDSCIPLYNF 157 (374)
Q Consensus 129 l~Ll~~AL~~~~~d~fvlLSgsD~PL~s~ 157 (374)
=.++..|++....+|+++|-+.|+|....
T Consensus 118 N~G~~~al~~A~gd~i~flD~D~i~~~d~ 146 (287)
T 2fy7_A 118 NVGFQEALKDYDYTCFVFSDVDLIPMNDH 146 (287)
T ss_dssp HHHHHHHHHHSCCCEEEEECTTEEESBTT
T ss_pred hhHHHHHHHhCCCCEEEEECCCcccCCCc
Confidence 33454555655679999999999998774
No 4
>2z86_A Chondroitin synthase; GT-A, glycosyltransferase A, fold; HET: UGA UDP; 2.40A {Escherichia coli} PDB: 2z87_A*
Probab=18.93 E-value=6.8e+02 Score=24.85 Aligned_cols=103 Identities=11% Similarity=0.022 Sum_probs=57.7
Q ss_pred CcEEEEEEeCCCCC-HHHHHHHHhccCC-CceEEEEeeCCCCcc-----cCCCCccceeeccccCCccceecCCccHHHH
Q 017260 55 PKIAFLFIARNRLP-LEMVWDKFFKGEE-SRFSIYVHSRPGFLF-----SKGTTRSIYFLDRQVNDSIQVDWGGASMIEA 127 (374)
Q Consensus 55 ~kiAfLilah~~~~-l~rL~~~~f~~~~-~~~~IyIHvD~k~~~-----~~~~~~~~~F~nr~i~~r~~V~WGg~SlV~A 127 (374)
|++..+|.++++.. +.+.++++..... ..+.|+|--|...+- ........+-+ + ...-.+.+...|
T Consensus 93 p~vsviIp~~n~~~~l~~~l~sl~~q~~~~~~eiivvDd~s~d~t~~~~~~~~~~~~i~~---i----~~~~~~~g~~~a 165 (625)
T 2z86_A 93 DGLSIVIPTYNRAKILAITLACLCNQKTIYDYEVIVADDGSKENIEEIVREFESLLNIKY---V----RQKDYGYQLCAV 165 (625)
T ss_dssp CCEEEEEEESSCHHHHHHHHHHHHTCCCSSCEEEEEEEESCSSCHHHHHHTTTTTSCEEE---E----EECCCSCCHHHH
T ss_pred CcEEEEEecCCcHHHHHHHHHHHHhhccCCCeEEEEEeCCCchhHHHHHHHhhhcCCeEE---E----EeCCCCcchhHH
Confidence 68999999999977 8999999865321 257776655554321 11100001111 0 111123456666
Q ss_pred HHHHHHHHhcCCCCCEEEEecCCCccCCCh-HHHHHHHhcCC
Q 017260 128 ERILLRHALADPFNDRFVFLSDSCIPLYNF-SYTYNYIMSTS 168 (374)
Q Consensus 128 ~l~Ll~~AL~~~~~d~fvlLSgsD~PL~s~-~~I~~~L~~~~ 168 (374)
--.+++.| ..+++++|-+.+.|-... ..+.+.+..++
T Consensus 166 ~N~g~~~a----~g~~v~~lD~D~~~~~~~l~~~~~~~~~~~ 203 (625)
T 2z86_A 166 RNLGLRAA----KYNYVAILDCDMAPNPLWVQSYMELLAVDD 203 (625)
T ss_dssp HHHHHHHC----CSSEEEEECTTEEECTTHHHHHHHHHHHCT
T ss_pred HHHHHHhC----CcCEEEEECCCCCCCHHHHHHHHHHHhcCC
Confidence 66666665 458888888888873322 33444454443
No 5
>3bcv_A Putative glycosyltransferase protein; protein structure initiative II, PSI-II NYSGXRC, structural genomics; 2.35A {Bacteroides fragilis}
Probab=18.02 E-value=2.7e+02 Score=23.40 Aligned_cols=100 Identities=13% Similarity=0.001 Sum_probs=55.3
Q ss_pred CCcEEEEEEeCCCCC-HHHHHHHHhccCCCceEEEEeeCCCCcc-----cCCC-CccceeeccccCCccceecCCccHHH
Q 017260 54 KPKIAFLFIARNRLP-LEMVWDKFFKGEESRFSIYVHSRPGFLF-----SKGT-TRSIYFLDRQVNDSIQVDWGGASMIE 126 (374)
Q Consensus 54 ~~kiAfLilah~~~~-l~rL~~~~f~~~~~~~~IyIHvD~k~~~-----~~~~-~~~~~F~nr~i~~r~~V~WGg~SlV~ 126 (374)
.|++..+|.+++..+ +++.++++.......+.|.|--|...+- +... ....+- .+.. ...+...
T Consensus 4 ~p~vsViIp~yn~~~~l~~~l~Sl~~q~~~~~eiIvvDd~S~d~t~~~~~~~~~~~~~i~---~i~~------~n~G~~~ 74 (240)
T 3bcv_A 4 IPKVSVIVPIYNVEKYLDQCVQALLAQTLSDIEIILIDDESPDNCPKICDDYAAQYPNIK---VIHK------KNAGLGM 74 (240)
T ss_dssp CCSEEEEEEESSCTTTHHHHHHHHHTCSSSSEEEEEEECCCSSSHHHHHHHHHHHCSSEE---EEEC------CCCCHHH
T ss_pred CCcEEEEEecCCCHHHHHHHHHHHHhCcCCCeEEEEEECCCCcCHHHHHHHHHhhCCCEE---EEEC------CCCChHH
Confidence 578999999999987 8999999875444456776644443221 0000 000111 1110 1223455
Q ss_pred HHHHHHHHHhcCCCCCEEEEecCCCccCCCh-HHHHHHHhc
Q 017260 127 AERILLRHALADPFNDRFVFLSDSCIPLYNF-SYTYNYIMS 166 (374)
Q Consensus 127 A~l~Ll~~AL~~~~~d~fvlLSgsD~PL~s~-~~I~~~L~~ 166 (374)
|--.+++.| .-+|+++|-+.|++--.. +.+.+.+..
T Consensus 75 a~N~g~~~a----~g~~i~~lD~Dd~~~~~~l~~l~~~~~~ 111 (240)
T 3bcv_A 75 ACNSGLDVA----TGEYVAFCDSDDYVDSDMYMTMYNVAQK 111 (240)
T ss_dssp HHHHHHHHC----CSSEEEECCTTCCCCTTHHHHHHHHHHH
T ss_pred HHHHHHHHc----CCCEEEEECCCCcCCHHHHHHHHHHHHh
Confidence 555555555 348899998888763332 334444444
No 6
>4fix_A UDP-galactofuranosyl transferase GLFT2; CAZY GT-2 family, glycosyltrans carbohydrate binding, membrane; 2.45A {Mycobacterium tuberculosis} PDB: 4fiy_A*
Probab=13.53 E-value=1.9e+02 Score=30.00 Aligned_cols=113 Identities=8% Similarity=-0.050 Sum_probs=61.0
Q ss_pred CCCCcEEEEEEeCCCCC-HHHHHHHHhccCC---CceEEEEeeCCCCcccCCCCc-cceeeccccCCccceec-CCccHH
Q 017260 52 VQKPKIAFLFIARNRLP-LEMVWDKFFKGEE---SRFSIYVHSRPGFLFSKGTTR-SIYFLDRQVNDSIQVDW-GGASMI 125 (374)
Q Consensus 52 ~~~~kiAfLilah~~~~-l~rL~~~~f~~~~---~~~~IyIHvD~k~~~~~~~~~-~~~F~nr~i~~r~~V~W-Gg~SlV 125 (374)
..+++|+.+|.+++... +.+.++++..... ..+.| |=||.++.-...... ..... ...+++.+.. +..+.-
T Consensus 177 ~~~pkVSVVIptYN~~~~L~~~L~SL~~qt~~~~~~~EI-IVVDNgStD~s~~~~~~e~~~--~~~~~I~vI~~~N~G~a 253 (657)
T 4fix_A 177 PGTANIAVGIPTFNRPADCVNALRELTADPLVDQVIGAV-IVPDQGERKVRDHPDFPAAAA--RLGSRLSIHDQPNLGGS 253 (657)
T ss_dssp CSCCCEEEECCBSSCHHHHHHHHHHHTTSHHHHTTEEEE-EEEECSSSCGGGSTTHHHHHH--HHGGGEEEEECCCCHHH
T ss_pred CCCCeEEEEEEecCCHHHHHHHHHHHHcCccccCCCCEE-EEEECcCCCccchHHHHHHHH--hcCCCEEEEECCCCCHH
Confidence 45689999999999987 8999999753211 33344 445555421000000 00000 0001222221 123445
Q ss_pred HHHHHHHHHHhcCCCCCEEEEecCCCccCCC-hHHHHHHHhcC
Q 017260 126 EAERILLRHALADPFNDRFVFLSDSCIPLYN-FSYTYNYIMST 167 (374)
Q Consensus 126 ~A~l~Ll~~AL~~~~~d~fvlLSgsD~PL~s-~~~I~~~L~~~ 167 (374)
.|--.+++.|......+|+++|-+.+++--+ ...+.+++..+
T Consensus 254 ~a~N~Gl~~A~g~~~~dyIlfLD~D~~~~pd~L~~ll~~l~~~ 296 (657)
T 4fix_A 254 GGYSRVMYEALKNTDCQQILFMDDDIRLEPDSILRVLAMHRFA 296 (657)
T ss_dssp HHHHHHHHHHHHHCCCSEEEEECSSEEECTHHHHHHHHHHHHB
T ss_pred HHHHHHHHHHHhcCCCCEEEEECCCCccChhHHHHHHHHHHhC
Confidence 5667788888875467899999888776422 23344445443
No 7
>1iio_A Conserved hypothetical protein MTH865; 4-helical bundle, monomer, structural genomics, unknown function; NMR {Methanothermobacterthermautotrophicus str} SCOP: a.39.4.1
Probab=12.76 E-value=50 Score=25.48 Aligned_cols=40 Identities=10% Similarity=0.111 Sum_probs=26.8
Q ss_pred CccceecCCccHHHHHHHHHHHHhcCCCCCEEEEecCCCccCCChHHHHHHHhc
Q 017260 113 DSIQVDWGGASMIEAERILLRHALADPFNDRFVFLSDSCIPLYNFSYTYNYIMS 166 (374)
Q Consensus 113 ~r~~V~WGg~SlV~A~l~Ll~~AL~~~~~d~fvlLSgsD~PL~s~~~I~~~L~~ 166 (374)
....+.-|+.++-..++. =+|.++|||+++.+++.+-+..
T Consensus 41 ~~t~c~~Gd~~~ta~El~--------------kll~~~DFP~ksA~~lAd~iv~ 80 (84)
T 1iio_A 41 PDTTCKSGDVELKASDAG--------------QVLTADDFPFKSAEEVADTIVN 80 (84)
T ss_dssp SCCCCCBTTBCCCTTTTG--------------GGSCGGGSBCSHHHHHHHHHHH
T ss_pred CCCceeeCCEeeeHHHHH--------------hhCCcccCCCCCHHHHHHHHHH
Confidence 355666677655433211 2567899999999999887754
No 8
>3q80_A 2-C-methyl-D-erythritol 4-phosphate cytidyltransf; TB structural genomics consortium, TBSGC, rossman fold; HET: CDM; 2.00A {Mycobacterium tuberculosis} SCOP: c.68.1.0 PDB: 3q7u_A* 3okr_A 2xwn_A*
Probab=8.91 E-value=3.8e+02 Score=23.51 Aligned_cols=88 Identities=11% Similarity=0.097 Sum_probs=51.5
Q ss_pred CCC-HHHHHHHHhccCCCceEEEEeeCCCCc--ccCCCCccceeeccccCCccceecCCccHHHHHHHHHHHHhcCCCCC
Q 017260 66 RLP-LEMVWDKFFKGEESRFSIYVHSRPGFL--FSKGTTRSIYFLDRQVNDSIQVDWGGASMIEAERILLRHALADPFND 142 (374)
Q Consensus 66 ~~~-l~rL~~~~f~~~~~~~~IyIHvD~k~~--~~~~~~~~~~F~nr~i~~r~~V~WGg~SlV~A~l~Ll~~AL~~~~~d 142 (374)
..| +.+.++++...+ .--.|+|=++.... +.. .. ...+.+.-||-+...+.+.+|+.+-.+...+
T Consensus 34 Gkpll~~~l~~~~~~~-~~~~ivVv~~~~~~~~~~~------~~-----~~~v~~v~gg~~r~~sv~~gl~~~~~~~~~d 101 (231)
T 3q80_A 34 GQTLIERAVDGLLDSG-VVDTVVVAVPADRTDEARQ------IL-----GHRAMIVAGGSNRTDTVNLALTVLSGTAEPE 101 (231)
T ss_dssp TEEHHHHHHHHHHHTS-CCCEEEEEECGGGHHHHHH------HH-----GGGCEEEECCSSHHHHHHHHHGGGC---CCS
T ss_pred CeEHHHHHHHHHHhCC-CCCeEEEECChHHHHHHHH------Hh-----cCCeEEEcCCCchHHHHHHHHHHhhhcCCCC
Confidence 344 688888875322 12255565554321 100 00 1134455688887777776666442221123
Q ss_pred EEEEecCCCccCCChHHHHHHHhc
Q 017260 143 RFVFLSDSCIPLYNFSYTYNYIMS 166 (374)
Q Consensus 143 ~fvlLSgsD~PL~s~~~I~~~L~~ 166 (374)
++++-..|.|+.+.+.|...+..
T Consensus 102 -~Vlv~~~d~Pli~~~~i~~li~~ 124 (231)
T 3q80_A 102 -FVLVHDAARALTPPALVARVVEA 124 (231)
T ss_dssp -EEEECCTTCTTCCHHHHHHHHHH
T ss_pred -EEEEEcCCcCCCCHHHHHHHHHH
Confidence 68888999999999999888765
No 9
>1vpa_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltran; TM1393, JCSG, joint center for structural GENO PSI, protein structure initiative; HET: CTP; 2.67A {Thermotoga maritima} SCOP: c.68.1.13
Probab=8.38 E-value=4.9e+02 Score=21.97 Aligned_cols=86 Identities=16% Similarity=0.203 Sum_probs=50.2
Q ss_pred HHHHHHHHhccCCCceEEEEeeCCCCc--ccCCCCccceeeccccCCccceecCCccHHHHHHHHHHHHhcCCCCCEEEE
Q 017260 69 LEMVWDKFFKGEESRFSIYVHSRPGFL--FSKGTTRSIYFLDRQVNDSIQVDWGGASMIEAERILLRHALADPFNDRFVF 146 (374)
Q Consensus 69 l~rL~~~~f~~~~~~~~IyIHvD~k~~--~~~~~~~~~~F~nr~i~~r~~V~WGg~SlV~A~l~Ll~~AL~~~~~d~fvl 146 (374)
+++.++++-+.. ..-.|+|=++.... +..... + ...+...-||.++..+...+++.+-.. ..+ +++
T Consensus 44 i~~~i~~l~~~~-~~~~ivVv~~~~~~~~~~~~~~----~-----~~~~~~~~gg~~~~~sv~~al~~~~~~-~~~-~vl 111 (234)
T 1vpa_A 44 FEYPLSTFLKSE-AIDGVVIVTRREWFEVVEKRVF----H-----EKVLGIVEGGDTRSQSVRSALEFLEKF-SPS-YVL 111 (234)
T ss_dssp THHHHHHHHHCT-TCSEEEEEECGGGHHHHHTTCC----C-----TTEEEEEECCSSHHHHHHHHHHHHGGG-CCS-EEE
T ss_pred HHHHHHHHHcCC-CCCeEEEEEChHHHHHHHHHhc----c-----CCceEEeCCCCcHHHHHHHHHHHhhhc-CCC-EEE
Confidence 688888864321 12356666654321 111110 1 123445568888888888888765321 235 556
Q ss_pred ecCCCccCCChHHHHHHHhc
Q 017260 147 LSDSCIPLYNFSYTYNYIMS 166 (374)
Q Consensus 147 LSgsD~PL~s~~~I~~~L~~ 166 (374)
+...|.|+.+.+.|...+..
T Consensus 112 v~~~D~Pli~~~~i~~l~~~ 131 (234)
T 1vpa_A 112 VHDSARPFLRKKHVSEVLRR 131 (234)
T ss_dssp EEETTSCCCCHHHHHHHHHH
T ss_pred EecCcccCCCHHHHHHHHHH
Confidence 66679999999888777653
No 10
>3ku3_A Hemagglutinin HA1 chain; viral envelope protein, viral fusion protein, protein, viral protein; HET: NAG; 1.60A {Influenza a virus} SCOP: b.19.1.2 PDB: 3qqb_A* 3qqe_A* 3qqo_A* 3ku6_A* 3ku5_A* 1jsm_A* 1jsn_A* 1jso_A* 3qqi_A*
Probab=8.33 E-value=1.6e+02 Score=28.23 Aligned_cols=62 Identities=13% Similarity=0.090 Sum_probs=41.1
Q ss_pred ceecCCccHHHHHHHHHH-HHh-cCCCCCEEEE----ecCCCcc--CCChHHHHHHHhc-CCCccEeeccC
Q 017260 116 QVDWGGASMIEAERILLR-HAL-ADPFNDRFVF----LSDSCIP--LYNFSYTYNYIMS-TSTSFVDSFAD 177 (374)
Q Consensus 116 ~V~WGg~SlV~A~l~Ll~-~AL-~~~~~d~fvl----LSgsD~P--L~s~~~I~~~L~~-~~~sFI~~~~~ 177 (374)
.+.=|.=++.-+.|-==+ ..+ ....|+|+|= ..|.||| +-+-+++.+.|++ ...++|+.++.
T Consensus 51 pl~L~~Cti~g~ilGnP~CD~~l~~~~WsyIVEr~~a~ng~CYPG~~~d~eeLR~l~ss~~~~erieifp~ 121 (327)
T 3ku3_A 51 PLELGDCSIAGWLLGNPECDRLLSVPEWSYIMEKENPRDGLCYPGSFNDYEELKHLLSSVKHFEKVKILPK 121 (327)
T ss_dssp CEECTTBCHHHHHHTCGGGGGGSSCCCCSCEEECSSCSBSCSSCEEETTHHHHHHHHTTEEEEEEECCSCG
T ss_pred ceeCCCCccccEEecCcchhccCCCceeEEEEEcCCCCCCcccCCccCCHHHHHHHHhccCCceeEEecCC
Confidence 455566666655442111 122 3457999998 4567999 7788899999987 46777876553
Done!