Query 017260
Match_columns 374
No_of_seqs 207 out of 795
Neff 6.4
Searched_HMMs 13730
Date Mon Mar 25 11:34:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017260.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/017260hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1qg8a_ c.68.1.1 (A:) Spore co 75.1 13 0.00092 30.6 11.2 112 55-172 1-122 (255)
2 d1qwja_ c.68.1.13 (A:) CMP acy 28.7 72 0.0053 25.0 7.4 102 54-166 1-119 (228)
3 d1fo8a_ c.68.1.10 (A:) N-acety 24.7 1.2E+02 0.0085 27.0 8.5 108 57-164 4-123 (343)
4 d1omza_ c.68.1.15 (A:) Alpha-1 23.1 43 0.0031 25.8 4.7 98 56-169 4-111 (265)
5 d1iioa_ a.39.4.1 (A:) Hypothet 16.6 16 0.0012 26.4 0.3 21 146-166 60-80 (84)
6 d1i52a_ c.68.1.13 (A:) 4-dipho 15.4 2.4E+02 0.017 21.7 11.5 100 55-166 2-119 (225)
7 d1r5la1 a.5.3.1 (A:25-90) Alph 15.4 16 0.0012 24.9 0.0 20 338-357 30-49 (66)
8 d1olma1 a.5.3.1 (A:1-75) Super 12.8 21 0.0015 24.6 0.0 19 338-356 40-58 (75)
9 d1w55a1 c.68.1.13 (A:3-207) Is 10.2 1.1E+02 0.0077 24.7 3.9 84 65-166 27-111 (205)
10 d2qalc1 d.52.3.1 (C:1-105) Rib 9.7 37 0.0027 25.2 0.6 31 198-228 17-47 (105)
No 1
>d1qg8a_ c.68.1.1 (A:) Spore coat polysaccharide biosynthesis protein SpsA {Bacillus subtilis [TaxId: 1423]}
Probab=75.07 E-value=13 Score=30.62 Aligned_cols=112 Identities=8% Similarity=0.109 Sum_probs=65.4
Q ss_pred CcEEEEEEeCCCCC-HHHHHHHHhccCCCceEEEEeeCCCCc-----ccCCCC--ccceeeccccCCccceecCCccHHH
Q 017260 55 PKIAFLFIARNRLP-LEMVWDKFFKGEESRFSIYVHSRPGFL-----FSKGTT--RSIYFLDRQVNDSIQVDWGGASMIE 126 (374)
Q Consensus 55 ~kiAfLilah~~~~-l~rL~~~~f~~~~~~~~IyIHvD~k~~-----~~~~~~--~~~~F~nr~i~~r~~V~WGg~SlV~ 126 (374)
|+|..+|-+++... +++.++.+.....+.+.|+|.-|.+.+ +++... +..++.+..+ .+...=...+.-.
T Consensus 1 P~vSiiip~yN~~~~l~~~l~Si~~Qt~~~~eiivvdd~S~d~t~~~l~~~~~~~~i~~~~~~~~--~~~~~~~~~g~~~ 78 (255)
T d1qg8a_ 1 PKVSVIMTSYNKSDYVAKSISSILSQTFSDFELFIMDDNSNEETLNVIRPFLNDNRVRFYQSDIS--GVKERTEKTRYAA 78 (255)
T ss_dssp CCEEEEEEESSCTTTHHHHHHHHHTCSCCCEEEEEEECSCCHHHHHHHGGGGGSTTEEEEECCCC--SHHHHHSSCHHHH
T ss_pred CEEEEEEecCCCHHHHHHHHHHHHhCCCCCeEEEEEECCCCccHHHHHHHhhhhccccccccccc--ccccccccchhcc
Confidence 68999999998887 899999987655567899888887542 111111 1112221100 0000012333444
Q ss_pred HHHHHHHHHhcCCCCCEEEEecCCCccCCC-hHHHHHHHhcC-CCccE
Q 017260 127 AERILLRHALADPFNDRFVFLSDSCIPLYN-FSYTYNYIMST-STSFV 172 (374)
Q Consensus 127 A~l~Ll~~AL~~~~~d~fvlLSgsD~PL~s-~~~I~~~L~~~-~~sFI 172 (374)
|-=.+++.| ..+|+++|-+.|++..+ .+.+.+++..+ +..++
T Consensus 79 a~N~gi~~a----~g~~i~~lD~Dd~~~p~~l~~~~~~~~~~~~~~~v 122 (255)
T d1qg8a_ 79 LINQAIEMA----EGEYITYATDDNIYMPDRLLKMVRELDTHPEKAVI 122 (255)
T ss_dssp HHHHHHHHC----CCSEEEEEETTEEECTTHHHHHHHHHHHCTTCCEE
T ss_pred ccccccccc----ccccccccccccccccchHHHHHHHHHhCCCCCeE
Confidence 444444444 45899999999999765 34455566554 34555
No 2
>d1qwja_ c.68.1.13 (A:) CMP acylneuraminate synthetase {Mouse (Mus musculus) [TaxId: 10090]}
Probab=28.68 E-value=72 Score=25.04 Aligned_cols=102 Identities=14% Similarity=0.064 Sum_probs=55.7
Q ss_pred CCcEEEEEEeCCC--------------CC-HHHHHHHHhccCCCceEEEEeeCCCCcccCCCCcc-ceeeccccCCccce
Q 017260 54 KPKIAFLFIARNR--------------LP-LEMVWDKFFKGEESRFSIYVHSRPGFLFSKGTTRS-IYFLDRQVNDSIQV 117 (374)
Q Consensus 54 ~~kiAfLilah~~--------------~~-l~rL~~~~f~~~~~~~~IyIHvD~k~~~~~~~~~~-~~F~nr~i~~r~~V 117 (374)
||||+-+|.|+++ .+ ++..+++.-+. ...-.|+|=.|.....+...... .++. .+-..
T Consensus 1 ~~ki~aiIpaR~~S~Rlp~K~l~~i~gkpLi~~~i~~~~ks-~~id~Iivstd~~~i~~~~~~~~~~~~~-----~~~~~ 74 (228)
T d1qwja_ 1 PPHLAALVLARGGSKGIPLKNIKRLAGVPLIGWVLRAALDA-GVFQSVWVSTDHDEIENVAKQFGAQVHR-----RSSET 74 (228)
T ss_dssp CCCEEEEEECCSCCSSSSCTTTSEETTEEHHHHHHHHHHHH-TCCSEEEEEESCHHHHHHHHHTTCEEEE-----CCGGG
T ss_pred CCCEEEEeccCCCCCCCCCcchhhhCCeeHHHHHHHHHHhc-CCcceEEEecchhhhhhhhhhcCccccc-----ccccc
Confidence 6889999999843 13 35566654332 22336777666532111111111 1222 12222
Q ss_pred ecCCccHHHHHHHHHHHHhc-CCCCCEEEEecCCCccCCChHHHHHHHhc
Q 017260 118 DWGGASMIEAERILLRHALA-DPFNDRFVFLSDSCIPLYNFSYTYNYIMS 166 (374)
Q Consensus 118 ~WGg~SlV~A~l~Ll~~AL~-~~~~d~fvlLSgsD~PL~s~~~I~~~L~~ 166 (374)
.=+..+.+++. .++++ ....++++++.+ |-|+.+.+.|.+.+..
T Consensus 75 ~~~~~~~~~~i----~~~~~~~~~~~~iv~~~~-~~P~~~~~~I~~~i~~ 119 (228)
T d1qwja_ 75 SKDSSTSLDAI----VEFLNYHNEVDIVGNIQA-TSPCLHPTDLQKVAEM 119 (228)
T ss_dssp SSTTCCHHHHH----HHHHTTCTTCSEEEEECT-TCTTCCHHHHHHHHHH
T ss_pred ccccchhhhhh----hhccccccccceeeeecc-cccccCchhhhhhhhh
Confidence 22444555444 45554 345788888875 6699999998887654
No 3
>d1fo8a_ c.68.1.10 (A:) N-acetylglucosaminyltransferase I {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}
Probab=24.68 E-value=1.2e+02 Score=26.99 Aligned_cols=108 Identities=17% Similarity=0.084 Sum_probs=61.7
Q ss_pred EEEEEEeCCCCCHHHHHHHHhcc--CCCceEEEEeeCCCCcc-c-C--CCCccc-eeec-----cccCCccceecCCccH
Q 017260 57 IAFLFIARNRLPLEMVWDKFFKG--EESRFSIYVHSRPGFLF-S-K--GTTRSI-YFLD-----RQVNDSIQVDWGGASM 124 (374)
Q Consensus 57 iAfLilah~~~~l~rL~~~~f~~--~~~~~~IyIHvD~k~~~-~-~--~~~~~~-~F~n-----r~i~~r~~V~WGg~Sl 124 (374)
|+.||+|.+.+.+.|+++++.+. ....+.|||-.|....- . + ...... .+.. ..+.......=|...+
T Consensus 4 iPVlv~a~NRP~l~r~LesLlk~~p~~~~~~I~Vs~DG~~~~~~~~v~~~~~~v~~I~~~~~~~~~~~~~~~k~~~n~gi 83 (343)
T d1fo8a_ 4 IPILVIACDRSTVRRCLDKLLHYRPSAELFPIIVSQDCGHEETAQVIASYGSAVTHIRQPDLSNIAVQPDHRKFQGYYKI 83 (343)
T ss_dssp CCEEEEESSCTTHHHHHHHHHHHCSCTTTSCEEEEECTTCHHHHHHHHTTGGGSEEEECSCCCCCCCCTTCGGGHHHHHH
T ss_pred ccEEEEEcCHHHHHHHHHHHHhcCccccCccEEEEecCCchhHHHHHHHHHHHHHHhcCCccccceecchhhcccchhHH
Confidence 57889999887789999998653 23456799999975421 0 0 000011 1110 0000000111123334
Q ss_pred HHHHHHHHHHHhcCCCCCEEEEecCCCccCCChHHHHHHH
Q 017260 125 IEAERILLRHALADPFNDRFVFLSDSCIPLYNFSYTYNYI 164 (374)
Q Consensus 125 V~A~l~Ll~~AL~~~~~d~fvlLSgsD~PL~s~~~I~~~L 164 (374)
-+.-..+|..+.+...++++|.|=+.+.|=.+|-.....+
T Consensus 84 arhy~~AL~~~F~~~~~~~~IiLEDDl~~spdFf~y~~~~ 123 (343)
T d1fo8a_ 84 ARHYRWALGQIFHNFNYPAAVVVEDDLEVAPDFFEYFQAT 123 (343)
T ss_dssp HHHHHHHHHHHHTTSCCSEEEEEETTEEECTTHHHHHHHH
T ss_pred HHHHHHHHHHHhcccCCceEEEEecCceeeHHHHHHHHHH
Confidence 4555556666666556899999999999977765544443
No 4
>d1omza_ c.68.1.15 (A:) Alpha-1,4-N-acetylhexosaminyltransferase (Alpha-GalNAcT EXTL2) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=23.06 E-value=43 Score=25.79 Aligned_cols=98 Identities=7% Similarity=0.038 Sum_probs=55.1
Q ss_pred cEEEEEEeCCCCC-HHHHHHHHhccCCCceEEEEeeCCCCcccC------CCCc--cceeeccccCCccceecCCccHHH
Q 017260 56 KIAFLFIARNRLP-LEMVWDKFFKGEESRFSIYVHSRPGFLFSK------GTTR--SIYFLDRQVNDSIQVDWGGASMIE 126 (374)
Q Consensus 56 kiAfLilah~~~~-l~rL~~~~f~~~~~~~~IyIHvD~k~~~~~------~~~~--~~~F~nr~i~~r~~V~WGg~SlV~ 126 (374)
|+..+|.+++.++ ++++++++.+.+ ....+.|..|.+.+-.. .... ..++ .-.++|.+-
T Consensus 4 ~~tvii~tyn~~~~l~~~l~sl~~q~-~~~~~iiV~d~~sd~~~~~i~~~~~~~~~~~~~---------~~~~~g~~~-- 71 (265)
T d1omza_ 4 SFTLIMQTYNRTDLLLRLLNHYQAVP-SLHKVIVVWNNVGEKGPEELWNSLGPHPIPVIF---------KPQTANKMR-- 71 (265)
T ss_dssp CEEEEEEESSCHHHHHHHHHHHTTST-TEEEEEEEECCTTCCCTHHHHHHTCCCSSCEEE---------EECSSCCGG--
T ss_pred cEEEEEEcCCCHHHHHHHHHHHHcCC-CcCeEEEEECCCCCccHHHHHHHhcccceEEEE---------ecCCCCchh--
Confidence 6788999999988 899999985432 23456777777553110 0000 0111 112333332
Q ss_pred HHHHHHHHHhcCCCCCEEEEecCCCccCCC-hHHHHHHHhcCCC
Q 017260 127 AERILLRHALADPFNDRFVFLSDSCIPLYN-FSYTYNYIMSTST 169 (374)
Q Consensus 127 A~l~Ll~~AL~~~~~d~fvlLSgsD~PL~s-~~~I~~~L~~~~~ 169 (374)
| +-.+++....+|+++|=+.|+|-.+ .+.+.+.+..++.
T Consensus 72 a----~n~~~~~a~ge~i~~lD~D~~~~~~~l~~l~~~~~~~~~ 111 (265)
T d1omza_ 72 N----RLQVFPEVETNAVLMVDDDTLISAQDLVFAFSIWQQFPD 111 (265)
T ss_dssp G----GGSCCTTCCSSEEEEECTTEEECHHHHHHHHHHHTTSTT
T ss_pred h----hhhhHHhCCcCEEEEeCcccCCCHHHHHHHHHHHHhCCC
Confidence 2 1234444456889999877777443 3445555655443
No 5
>d1iioa_ a.39.4.1 (A:) Hypothetical protein MTH865 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=16.61 E-value=16 Score=26.41 Aligned_cols=21 Identities=14% Similarity=0.189 Sum_probs=17.9
Q ss_pred EecCCCccCCChHHHHHHHhc
Q 017260 146 FLSDSCIPLYNFSYTYNYIMS 166 (374)
Q Consensus 146 lLSgsD~PL~s~~~I~~~L~~ 166 (374)
+|+++|||+++.+++.+-+..
T Consensus 60 ~l~~~DFP~ksae~lad~ii~ 80 (84)
T d1iioa_ 60 VLTADDFPFKSAEEVADTIVN 80 (84)
T ss_dssp GSCGGGSBCSHHHHHHHHHHH
T ss_pred hcCcccCCCCCHHHHHHHHHH
Confidence 578999999999999887754
No 6
>d1i52a_ c.68.1.13 (A:) 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) {Escherichia coli [TaxId: 562]}
Probab=15.39 E-value=2.4e+02 Score=21.69 Aligned_cols=100 Identities=14% Similarity=0.114 Sum_probs=59.1
Q ss_pred CcEEEEEEeC-----------------CCCC-HHHHHHHHhccCCCceEEEEeeCCCCcccCCCCccceeeccccCCccc
Q 017260 55 PKIAFLFIAR-----------------NRLP-LEMVWDKFFKGEESRFSIYVHSRPGFLFSKGTTRSIYFLDRQVNDSIQ 116 (374)
Q Consensus 55 ~kiAfLilah-----------------~~~~-l~rL~~~~f~~~~~~~~IyIHvD~k~~~~~~~~~~~~F~nr~i~~r~~ 116 (374)
|+++-+|||. ++.| ++..++++.+. ...-.|+|-++.+...... ....+ ...+.
T Consensus 2 M~i~AIILAaG~gtRm~~~~pK~L~~i~gkplI~~~i~~~~~~-~~i~~Iivv~~~~~~~~~~----~~~~~---~~~v~ 73 (225)
T d1i52a_ 2 LDVCAVVPAAGFGRRMQTECPKQYLSIGNQTILEHSVHALLAH-PRVKRVVIAISPGDSRFAQ----LPLAN---HPQIT 73 (225)
T ss_dssp CCEEEEEEECCCCGGGCCSSCGGGSEETTEEHHHHHHHHHHTS-TTEEEEEEEECTTCCSGGG----SGGGG---CTTEE
T ss_pred CCEEEEEeCCCcceeCCCCCCcceeEECCEEHHHHHHHHHHhC-ccccccccccchhhhhhhh----hhhcc---ccccc
Confidence 7788888884 1224 57778776432 2334666666554321100 00000 13566
Q ss_pred eecCCccHHHHHHHHHHHHhcCCCCCEEEEecCCCccCCChHHHHHHHhc
Q 017260 117 VDWGGASMIEAERILLRHALADPFNDRFVFLSDSCIPLYNFSYTYNYIMS 166 (374)
Q Consensus 117 V~WGg~SlV~A~l~Ll~~AL~~~~~d~fvlLSgsD~PL~s~~~I~~~L~~ 166 (374)
+.+++-+..++.+..+.. +.+ .-+|++...|-|+.+.+.+...+..
T Consensus 74 ~~~~~~~~~~sv~~~~~~-~~~---~~~vl~~~~~~p~i~~~~~~~~~~~ 119 (225)
T d1i52a_ 74 VVDGGDERADSVLAGLKA-AGD---AQWVLVHDAARPCLHQDDLARLLAL 119 (225)
T ss_dssp EEECCSSHHHHHHHHHHT-STT---CSEEEECCTTCTTCCHHHHHHHHGG
T ss_pred cccCCcchhHHHHhhhcc-cCc---cceeeeeccCCCCCCHHHHHHHHhh
Confidence 777777776666554432 222 2367888889999999998888765
No 7
>d1r5la1 a.5.3.1 (A:25-90) Alpha-tocopherol transfer protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=15.37 E-value=16 Score=24.87 Aligned_cols=20 Identities=45% Similarity=0.443 Sum_probs=16.8
Q ss_pred cceEEeCCChhhHHHHHhhh
Q 017260 338 CFLFARKFTRPAALRLLTMS 357 (374)
Q Consensus 338 ~~lFARKF~~~~~~~Ll~~~ 357 (374)
-||-||||+.+.+..+++.-
T Consensus 30 rFLRarkf~~~ka~~~l~~y 49 (66)
T d1r5la1 30 RFLRARDFDLDLAWRLLKNY 49 (66)
T ss_dssp HHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHccCCHHHHHHHHHHH
Confidence 56889999999998888753
No 8
>d1olma1 a.5.3.1 (A:1-75) Supernatant protein factor (SPF), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=12.84 E-value=21 Score=24.56 Aligned_cols=19 Identities=26% Similarity=0.291 Sum_probs=16.0
Q ss_pred cceEEeCCChhhHHHHHhh
Q 017260 338 CFLFARKFTRPAALRLLTM 356 (374)
Q Consensus 338 ~~lFARKF~~~~~~~Ll~~ 356 (374)
-||-||||+.+.+...+..
T Consensus 40 RFLrAr~fdv~kA~~ml~~ 58 (75)
T d1olma1 40 RWLRARSFDLQKSEAMLRK 58 (75)
T ss_dssp HHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHCCCCHHHHHHHHHH
Confidence 5788999999998887764
No 9
>d1w55a1 c.68.1.13 (A:3-207) IspD/IspF bifunctional enzyme, CDP-me synthase domain {Campylobacter jejuni [TaxId: 197]}
Probab=10.22 E-value=1.1e+02 Score=24.66 Aligned_cols=84 Identities=18% Similarity=0.046 Sum_probs=52.7
Q ss_pred CCCC-HHHHHHHHhccCCCceEEEEeeCCCCcccCCCCccceeeccccCCccceecCCccHHHHHHHHHHHHhcCCCCCE
Q 017260 65 NRLP-LEMVWDKFFKGEESRFSIYVHSRPGFLFSKGTTRSIYFLDRQVNDSIQVDWGGASMIEAERILLRHALADPFNDR 143 (374)
Q Consensus 65 ~~~~-l~rL~~~~f~~~~~~~~IyIHvD~k~~~~~~~~~~~~F~nr~i~~r~~V~WGg~SlV~A~l~Ll~~AL~~~~~d~ 143 (374)
++.+ +...++.+.... ..-.|+|..+....... +.+.+.+.-||.+..++.+++|+.+ + ..
T Consensus 27 ~gkpii~~~l~~~~~~~-~~~~Ivvv~~~~~~~~~------------~~~~~~~v~Gg~~r~~Sv~~gl~~~----~-~~ 88 (205)
T d1w55a1 27 GNDPLWLYATKNLSSFY-PFKKIVVTSSNITYMKK------------FTKNYEFIEGGDTRAESLKKALELI----D-SE 88 (205)
T ss_dssp BTEEHHHHHHHHHHTTS-CCSCEEEEESCHHHHHT------------TCSSSEEEECCSSHHHHHHHHHTTC----C-SS
T ss_pred CCEEHHHHHHHHHHhhc-ccccccccccccccccc------------ccccccccccccchhhhhhhhhhhh----h-hc
Confidence 3444 677777765422 22345555443211110 1234566679999988877776543 2 23
Q ss_pred EEEecCCCccCCChHHHHHHHhc
Q 017260 144 FVFLSDSCIPLYNFSYTYNYIMS 166 (374)
Q Consensus 144 fvlLSgsD~PL~s~~~I~~~L~~ 166 (374)
+|++-+.|-|+-+.+.|..-+..
T Consensus 89 ~VlIhd~~rP~i~~~~i~~li~~ 111 (205)
T d1w55a1 89 FVMVSDVARVLVSKNLFDRLIEN 111 (205)
T ss_dssp EEEEEETTCTTCCHHHHHHHHTT
T ss_pred ceeeeccCcccCcHHHHHHHHhh
Confidence 78899999999999999888765
No 10
>d2qalc1 d.52.3.1 (C:1-105) Ribosomal protein S3 N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=9.73 E-value=37 Score=25.18 Aligned_cols=31 Identities=19% Similarity=0.227 Sum_probs=25.4
Q ss_pred cccceeEecHHHHHHhHcCCcchHHHHHhhh
Q 017260 198 KGSQWAVLTRKHAEIVVNDTTVFPMFQQHCK 228 (374)
Q Consensus 198 ~GSqW~~LtR~~ae~iv~d~~~~~~F~~~~k 228 (374)
..|.||+=.++.+++|.+|..+.....++++
T Consensus 17 ~~S~Wfa~~~~Y~~~l~eD~~IR~~i~k~~~ 47 (105)
T d2qalc1 17 WNSTWFANTKEFADNLDSDFKVRQYLTKELA 47 (105)
T ss_dssp CSCCCCCCHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred CCCEEcCCccchHHHHHHHHHHHHHHHHHHH
Confidence 4699999999999999999887766665553
Done!