BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017263
(374 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3FOB|A Chain A, Crystal Structure Of Bromoperoxidase From Bacillus
Anthracis
pdb|3FOB|B Chain B, Crystal Structure Of Bromoperoxidase From Bacillus
Anthracis
pdb|3FOB|C Chain C, Crystal Structure Of Bromoperoxidase From Bacillus
Anthracis
Length = 281
Score = 32.0 bits (71), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 43/91 (47%), Gaps = 13/91 (14%)
Query: 90 YSWQPASCAVPR--------FDGGDF---LRRYRGKRIMFVGDSLSLNMWESLSCMIHAS 138
Y+W A+ A P+ F DF L ++ ++ GDS + +E + H +
Sbjct: 188 YNWDIAAGASPKGTLDCITAFSKTDFRKDLEKFNIPTLIIHGDSDATVPFEYSGKLTHEA 247
Query: 139 VPNAKTSFVRK--ETLSSVSFEEYGVTLLLY 167
+PN+K + ++ L++ +E+ LLL+
Sbjct: 248 IPNSKVALIKGGPHGLNATHAKEFNEALLLF 278
>pdb|3LF7|A Chain A, Crystal Structure Of Fructosyltransferase (Wild-Type) From
A Japonicus
pdb|3LFI|A Chain A, Crystal Structure Of Fructosyltransferase (Wild-Type) From
A Japonicus In Complex With Glucose
pdb|3LFI|B Chain B, Crystal Structure Of Fructosyltransferase (Wild-Type) From
A Japonicus In Complex With Glucose
Length = 634
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 43/89 (48%), Gaps = 15/89 (16%)
Query: 209 WTHTGKAQPWDYIQDGQTLLKDMD--------RLEAFYKG---MSTWAR-WVDLNVDPSQ 256
+T +GK + +D I++GQ ++ +D +E + G +STWAR W D + +Q
Sbjct: 549 FTESGKLRLFDVIENGQEQVETLDLTVVVDNAVVEVYANGRFALSTWARSWYD---NSTQ 605
Query: 257 TKVFFQGISPTHYTFISLTETRGKEWNSR 285
+ F G + +S++E W R
Sbjct: 606 IRFFHNGEGEVQFRNVSVSEGLYNAWPER 634
>pdb|3LDK|A Chain A, Crystal Structure Of A. Japonicus Cb05
pdb|3LDR|A Chain A, Crystal Structure Of Fructosyltransferase (D191a) From A.
Japonicus In Complex With 1-Kestose
pdb|3LEM|A Chain A, Crystal Structure Of Fructosyltransferase (D191a) From A.
Ja Complex With Nystose
pdb|3LIG|A Chain A, Crystal Structure Of Fructosyltransferase (D191a) From A.
Ja
pdb|3LIH|A Chain A, Crystal Structure Of Fructosyltransferase (D191a) From A.
Japonicus In Complex With Raffinose
Length = 634
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 43/89 (48%), Gaps = 15/89 (16%)
Query: 209 WTHTGKAQPWDYIQDGQTLLKDMD--------RLEAFYKG---MSTWAR-WVDLNVDPSQ 256
+T +GK + +D I++GQ ++ +D +E + G +STWAR W D + +Q
Sbjct: 549 FTESGKLRLFDVIENGQEQVETLDLTVVVDNAVVEVYANGRFALSTWARSWYD---NSTQ 605
Query: 257 TKVFFQGISPTHYTFISLTETRGKEWNSR 285
+ F G + +S++E W R
Sbjct: 606 IRFFHNGEGEVQFRNVSVSEGLYNAWPER 634
>pdb|2QK7|B Chain B, A Covalent S-f Heterodimer Of Staphylococcal
Gamma-hemolysin
Length = 307
Score = 28.1 bits (61), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 27/50 (54%)
Query: 152 LSSVSFEEYGVTLLLYRTPYLVDIVKQKVGRVLTLNSIQAGKFWKDMDVL 201
++ VS ++ + LY+T D K K+ ++LT N I+ + KD VL
Sbjct: 12 ITPVSVKKVDDKVTLYKTTATADSDKFKISQILTFNFIKDKSYDKDTLVL 61
>pdb|3B07|A Chain A, Crystal Structure Of Octameric Pore Form Of
Gamma-Hemolysin From Staphylococcus Aureus
pdb|3B07|C Chain C, Crystal Structure Of Octameric Pore Form Of
Gamma-Hemolysin From Staphylococcus Aureus
pdb|3B07|E Chain E, Crystal Structure Of Octameric Pore Form Of
Gamma-Hemolysin From Staphylococcus Aureus
pdb|3B07|G Chain G, Crystal Structure Of Octameric Pore Form Of
Gamma-Hemolysin From Staphylococcus Aureus
Length = 309
Score = 28.1 bits (61), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 27/50 (54%)
Query: 152 LSSVSFEEYGVTLLLYRTPYLVDIVKQKVGRVLTLNSIQAGKFWKDMDVL 201
++ VS ++ + LY+T D K K+ ++LT N I+ + KD VL
Sbjct: 14 ITPVSVKKVDDKVTLYKTTATADSDKFKISQILTFNFIKDKSYDKDTLVL 63
>pdb|1LKF|A Chain A, Leukocidin F (Hlgb) From Staphylococcus Aureus
pdb|2LKF|A Chain A, Leukocidin F (Hlgb) From Staphylococcus Aureus
pdb|3LKF|A Chain A, Leukocidin F (Hlgb) From Staphylococcus Aureus With
Phosphocholine Bound
Length = 299
Score = 28.1 bits (61), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 27/50 (54%)
Query: 152 LSSVSFEEYGVTLLLYRTPYLVDIVKQKVGRVLTLNSIQAGKFWKDMDVL 201
++ VS ++ + LY+T D K K+ ++LT N I+ + KD VL
Sbjct: 4 ITPVSVKKVDDKVTLYKTTATADSDKFKISQILTFNFIKDKSYDKDTLVL 53
>pdb|1UX5|A Chain A, Crystal Structures Of A Formin Homology-2 Domain Reveal A
Flexibly Tethered Dimer Architecture
Length = 411
Score = 27.7 bits (60), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 26/106 (24%), Positives = 42/106 (39%), Gaps = 14/106 (13%)
Query: 79 KYGRPDKQYLKYSWQPASCAVPRFDGGDFLRRYRGKRIMFVGDSLSLNMWESLSCMIHAS 138
KY RP K+ + W+ C G GK F D + L A
Sbjct: 1 KYPRPHKKLKQLHWEKLDCTDNSIWGT-------GKAEKFADDLYEKGVLADLEKAFAAR 53
Query: 139 VPNAKTSFVRKETLSSVSF------EEYGVTLLLYRTPYLVDIVKQ 178
+ S RKE L ++F +++G+ L +Y + + D+VK+
Sbjct: 54 EIKSLAS-KRKEDLQKITFLSRDISQQFGINLHMYSSLSVADLVKK 98
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.435
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,790,059
Number of Sequences: 62578
Number of extensions: 509206
Number of successful extensions: 1412
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1409
Number of HSP's gapped (non-prelim): 9
length of query: 374
length of database: 14,973,337
effective HSP length: 100
effective length of query: 274
effective length of database: 8,715,537
effective search space: 2388057138
effective search space used: 2388057138
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)