BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 017263
         (374 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|O49312|YUC7_ARATH Putative flavin-containing monooxygenase YUCCA7 OS=Arabidopsis
           thaliana GN=YUC7 PE=3 SV=1
          Length = 431

 Score = 32.3 bits (72), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 31/99 (31%), Positives = 45/99 (45%), Gaps = 19/99 (19%)

Query: 93  QPASCAVPRFDG-----GDFL--------RRYRGKRIMFVGDSLSLNMWESLSCMIHASV 139
           + A   VP F+G     GD L         RYRGKR++ VG   S  M  SL    H + 
Sbjct: 167 ENAEKVVPEFEGLEDFGGDVLHAGDYKSGERYRGKRVLVVGCGNS-GMEVSLDLCNHDAS 225

Query: 140 PN----AKTSFVRKETLSSVSFEEYGVTLLLYRTPYLVD 174
           P+    +    + +E L   +F E  VT++ +   +LVD
Sbjct: 226 PSMVVRSSVHVLPREVLGKSTF-ELSVTMMKWMPVWLVD 263


>sp|A8WVM4|RME6_CAEBR Receptor-mediated endocytosis protein 6 OS=Caenorhabditis briggsae
           GN=rme-6 PE=3 SV=1
          Length = 1104

 Score = 31.6 bits (70), Expect = 9.8,   Method: Compositional matrix adjust.
 Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 5/56 (8%)

Query: 145 SFVRKETLSSVSFEEYGVTLLLYRTPYLVDIVKQKVGRVLTLNSIQAGKFWKDMDV 200
           + +RKET  S  F +Y V  +     YL   +++ V     LN IQ G FW D+D+
Sbjct: 179 TMLRKETSISTRFYKYFVEQMHPTMVYLTKALRKSV-----LNVIQLGNFWLDVDM 229


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.321    0.136    0.441 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 146,078,270
Number of Sequences: 539616
Number of extensions: 6205864
Number of successful extensions: 12455
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 12454
Number of HSP's gapped (non-prelim): 4
length of query: 374
length of database: 191,569,459
effective HSP length: 119
effective length of query: 255
effective length of database: 127,355,155
effective search space: 32475564525
effective search space used: 32475564525
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 62 (28.5 bits)