Query 017264
Match_columns 374
No_of_seqs 336 out of 1935
Neff 8.3
Searched_HMMs 46136
Date Fri Mar 29 07:02:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017264.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017264hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03088 SGT1, suppressor of 100.0 6.1E-91 1.3E-95 674.4 38.8 356 1-374 1-356 (356)
2 KOG1309 Suppressor of G2 allel 100.0 1.1E-71 2.4E-76 463.7 16.2 195 172-372 2-196 (196)
3 COG5091 SGT1 Suppressor of G2 100.0 2.7E-56 5.8E-61 394.2 16.7 347 9-372 2-368 (368)
4 PF05002 SGS: SGS domain ; In 100.0 2E-43 4.3E-48 262.4 1.3 81 292-372 2-82 (82)
5 KOG3260 Calcyclin-binding prot 100.0 7.9E-29 1.7E-33 206.4 11.5 138 175-344 76-214 (224)
6 cd06488 p23_melusin_like p23_l 99.9 1E-23 2.3E-28 162.9 10.3 87 174-260 1-87 (87)
7 cd06489 p23_CS_hSgt1_like p23_ 99.9 5.6E-22 1.2E-26 152.4 9.6 84 177-260 1-84 (84)
8 cd00237 p23 p23 binds heat sho 99.9 1.7E-21 3.7E-26 155.2 9.8 102 175-299 3-105 (106)
9 KOG0553 TPR repeat-containing 99.8 1.6E-20 3.5E-25 171.1 12.8 120 1-120 80-199 (304)
10 cd06465 p23_hB-ind1_like p23_l 99.8 1.5E-20 3.2E-25 151.5 9.6 86 175-262 2-89 (108)
11 cd06468 p23_CacyBP p23_like do 99.8 1.6E-19 3.4E-24 141.2 10.3 86 175-260 3-92 (92)
12 cd06466 p23_CS_SGT1_like p23_l 99.8 1.8E-19 3.8E-24 138.5 9.9 84 177-260 1-84 (84)
13 cd06490 p23_NCB5OR p23_like do 99.8 2.9E-19 6.3E-24 137.8 9.9 83 176-260 1-87 (87)
14 KOG3158 HSP90 co-chaperone p23 99.7 8.3E-18 1.8E-22 140.6 5.0 109 176-307 10-120 (180)
15 KOG0548 Molecular co-chaperone 99.7 2.2E-16 4.8E-21 153.4 14.1 116 2-117 358-473 (539)
16 PF04969 CS: CS domain; Inter 99.7 1.4E-16 3E-21 120.5 9.2 76 175-250 2-79 (79)
17 cd06469 p23_DYX1C1_like p23_li 99.7 1.6E-16 3.4E-21 120.2 9.0 78 178-260 1-78 (78)
18 cd06493 p23_NUDCD1_like p23_NU 99.7 2.5E-16 5.4E-21 121.2 9.4 81 176-259 1-84 (85)
19 cd06463 p23_like Proteins cont 99.7 3.9E-16 8.5E-21 119.2 10.0 83 178-260 1-84 (84)
20 cd06467 p23_NUDC_like p23_like 99.7 4.7E-16 1E-20 119.6 9.4 81 176-259 1-84 (85)
21 KOG0376 Serine-threonine phosp 99.6 8.6E-17 1.9E-21 155.0 4.3 318 1-372 3-326 (476)
22 PRK15359 type III secretion sy 99.6 1.2E-14 2.5E-19 123.3 16.3 117 4-120 26-142 (144)
23 KOG0548 Molecular co-chaperone 99.6 8.1E-15 1.8E-19 142.5 11.8 114 1-114 1-114 (539)
24 KOG0543 FKBP-type peptidyl-pro 99.6 2.8E-14 6.1E-19 135.5 14.9 119 2-120 208-341 (397)
25 cd06494 p23_NUDCD2_like p23-li 99.6 1.7E-14 3.6E-19 112.2 8.8 81 175-259 7-92 (93)
26 PRK15363 pathogenicity island 99.6 1.9E-13 4.1E-18 115.4 15.6 118 3-120 36-153 (157)
27 KOG4234 TPR repeat-containing 99.5 8.4E-14 1.8E-18 120.2 12.8 118 2-119 95-217 (271)
28 KOG1667 Zn2+-binding protein M 99.5 2.6E-14 5.7E-19 126.0 8.8 91 172-262 213-304 (320)
29 TIGR02552 LcrH_SycD type III s 99.5 8.5E-13 1.8E-17 109.9 15.7 116 3-118 18-133 (135)
30 KOG4648 Uncharacterized conser 99.5 3E-13 6.6E-18 125.3 9.8 117 3-119 98-214 (536)
31 PRK11189 lipoprotein NlpI; Pro 99.4 5.7E-12 1.2E-16 119.6 16.4 108 2-109 64-171 (296)
32 KOG0547 Translocase of outer m 99.4 2.2E-12 4.9E-17 124.3 12.8 118 2-119 115-233 (606)
33 cd06492 p23_mNUDC_like p23-lik 99.4 2.4E-12 5.2E-17 99.1 9.4 82 176-260 1-87 (87)
34 cd06495 p23_NUDCD3_like p23-li 99.4 3.1E-12 6.8E-17 100.9 9.6 88 175-262 6-96 (102)
35 KOG0550 Molecular chaperone (D 99.4 3.1E-12 6.8E-17 121.2 11.2 116 4-120 251-370 (486)
36 PRK10370 formate-dependent nit 99.4 2.7E-11 5.9E-16 108.1 15.8 108 3-110 74-184 (198)
37 TIGR02795 tol_pal_ybgF tol-pal 99.3 5.8E-11 1.3E-15 95.9 14.3 107 2-108 2-114 (119)
38 KOG4626 O-linked N-acetylgluco 99.3 8.8E-12 1.9E-16 123.1 9.2 118 2-119 252-369 (966)
39 TIGR00990 3a0801s09 mitochondr 99.3 8.3E-11 1.8E-15 122.6 16.0 117 3-119 332-448 (615)
40 PRK15331 chaperone protein Sic 99.3 1.3E-10 2.7E-15 98.7 13.9 116 3-119 38-153 (165)
41 TIGR00990 3a0801s09 mitochondr 99.3 1.2E-10 2.6E-15 121.4 16.3 118 3-120 366-483 (615)
42 KOG4626 O-linked N-acetylgluco 99.3 4.2E-11 9.2E-16 118.4 11.8 112 2-113 388-499 (966)
43 cd00189 TPR Tetratricopeptide 99.2 1.7E-10 3.7E-15 87.1 12.2 99 4-102 2-100 (100)
44 PF13414 TPR_11: TPR repeat; P 99.2 7.2E-11 1.6E-15 86.6 8.1 66 36-101 3-69 (69)
45 KOG4642 Chaperone-dependent E3 99.2 4.2E-11 9E-16 106.3 7.5 99 1-99 9-107 (284)
46 PF13414 TPR_11: TPR repeat; P 99.2 8.8E-11 1.9E-15 86.1 8.1 66 2-67 3-69 (69)
47 PRK02603 photosystem I assembl 99.2 6.7E-10 1.4E-14 96.9 14.6 110 2-111 35-162 (172)
48 KOG0547 Translocase of outer m 99.2 2.2E-10 4.7E-15 110.8 11.6 119 1-119 325-443 (606)
49 KOG0551 Hsp90 co-chaperone CNS 99.2 2E-10 4.3E-15 106.4 10.8 101 2-102 81-185 (390)
50 KOG0624 dsRNA-activated protei 99.1 2.7E-10 5.8E-15 106.0 10.9 103 3-105 39-141 (504)
51 PRK12370 invasion protein regu 99.1 7.6E-10 1.6E-14 114.0 15.5 92 14-105 316-407 (553)
52 PRK09782 bacteriophage N4 rece 99.1 9.8E-10 2.1E-14 118.9 16.9 114 3-116 610-723 (987)
53 PF12895 Apc3: Anaphase-promot 99.1 1.1E-10 2.5E-15 89.2 6.9 82 14-96 1-84 (84)
54 PRK15179 Vi polysaccharide bio 99.1 7.7E-10 1.7E-14 115.5 15.2 115 2-116 86-200 (694)
55 COG3063 PilF Tfp pilus assembl 99.1 8.9E-10 1.9E-14 97.7 13.1 115 2-116 35-151 (250)
56 PRK15359 type III secretion sy 99.1 4.3E-10 9.3E-15 95.2 10.5 97 21-120 12-108 (144)
57 KOG1126 DNA-binding cell divis 99.1 3.8E-10 8.3E-15 112.7 11.6 118 3-120 490-607 (638)
58 TIGR02521 type_IV_pilW type IV 99.1 2.3E-09 5.1E-14 95.6 15.7 115 2-116 31-147 (234)
59 PRK12370 invasion protein regu 99.1 1.4E-09 3.1E-14 111.9 15.4 118 3-120 339-457 (553)
60 cd00298 ACD_sHsps_p23-like Thi 99.1 2.5E-10 5.5E-15 85.3 7.2 73 178-250 1-80 (80)
61 PRK10370 formate-dependent nit 99.1 1.9E-09 4E-14 96.3 13.4 106 15-120 52-160 (198)
62 KOG1155 Anaphase-promoting com 99.1 1.1E-09 2.4E-14 105.3 12.3 113 8-120 336-448 (559)
63 KOG1125 TPR repeat-containing 99.1 2.7E-10 5.9E-15 112.2 8.2 99 4-102 432-530 (579)
64 KOG1155 Anaphase-promoting com 99.1 2.7E-09 5.9E-14 102.8 14.6 117 4-120 366-482 (559)
65 TIGR03302 OM_YfiO outer membra 99.1 4E-09 8.8E-14 96.2 15.4 106 2-107 33-152 (235)
66 KOG2076 RNA polymerase III tra 99.1 2.8E-09 6.1E-14 109.6 15.3 117 3-119 140-256 (895)
67 PRK11189 lipoprotein NlpI; Pro 99.1 8.2E-09 1.8E-13 98.0 17.5 102 2-103 98-269 (296)
68 KOG1126 DNA-binding cell divis 99.1 2.8E-10 6.1E-15 113.7 7.6 118 3-120 422-539 (638)
69 TIGR02552 LcrH_SycD type III s 99.1 1.7E-09 3.8E-14 89.8 11.3 98 23-120 4-101 (135)
70 TIGR02521 type_IV_pilW type IV 99.1 6.9E-09 1.5E-13 92.5 15.6 117 3-119 66-184 (234)
71 PRK10803 tol-pal system protei 99.1 6.9E-09 1.5E-13 96.4 16.0 106 3-108 143-255 (263)
72 CHL00033 ycf3 photosystem I as 99.0 8.5E-09 1.8E-13 89.4 15.3 103 2-104 35-154 (168)
73 PRK09782 bacteriophage N4 rece 99.0 4.4E-09 9.5E-14 113.9 15.9 111 9-120 583-693 (987)
74 COG5010 TadD Flp pilus assembl 99.0 6.6E-09 1.4E-13 93.8 14.0 116 5-120 103-218 (257)
75 KOG0545 Aryl-hydrocarbon recep 99.0 7.2E-09 1.6E-13 92.5 13.7 116 4-119 180-314 (329)
76 KOG2265 Nuclear distribution p 99.0 2E-09 4.3E-14 90.8 9.6 87 174-263 19-109 (179)
77 PF13429 TPR_15: Tetratricopep 99.0 2.4E-09 5.1E-14 100.7 10.9 117 4-120 148-264 (280)
78 PF13432 TPR_16: Tetratricopep 99.0 2.1E-09 4.6E-14 77.8 7.6 62 8-69 3-64 (65)
79 PF13432 TPR_16: Tetratricopep 99.0 1.7E-09 3.6E-14 78.4 7.0 65 40-104 1-65 (65)
80 PRK15174 Vi polysaccharide exp 99.0 8.5E-09 1.8E-13 108.2 15.2 108 9-116 219-330 (656)
81 PRK15174 Vi polysaccharide exp 99.0 1E-08 2.2E-13 107.6 15.5 110 4-113 248-361 (656)
82 PF13512 TPR_18: Tetratricopep 99.0 1.7E-08 3.8E-13 83.9 13.5 105 2-106 10-135 (142)
83 COG3063 PilF Tfp pilus assembl 99.0 1.2E-08 2.6E-13 90.5 12.9 114 3-116 70-185 (250)
84 KOG4555 TPR repeat-containing 98.9 2.8E-08 6.1E-13 80.6 13.5 101 3-103 44-148 (175)
85 COG4235 Cytochrome c biogenesi 98.9 4E-08 8.7E-13 90.8 16.1 117 3-119 157-276 (287)
86 PRK10049 pgaA outer membrane p 98.9 3.3E-08 7.2E-13 105.7 16.6 112 3-115 50-161 (765)
87 COG1729 Uncharacterized protei 98.9 4.3E-08 9.2E-13 89.6 14.8 110 3-112 142-257 (262)
88 PRK15179 Vi polysaccharide bio 98.9 3.5E-08 7.5E-13 103.2 16.1 116 3-118 121-237 (694)
89 TIGR03302 OM_YfiO outer membra 98.9 4.2E-08 9.2E-13 89.5 13.8 118 3-120 71-219 (235)
90 PLN02789 farnesyltranstransfer 98.9 7.3E-08 1.6E-12 92.2 15.2 112 4-115 73-187 (320)
91 PF13525 YfiO: Outer membrane 98.8 1.6E-07 3.4E-12 84.2 16.1 119 2-120 5-143 (203)
92 COG4783 Putative Zn-dependent 98.8 7.4E-08 1.6E-12 93.8 14.6 117 4-120 308-424 (484)
93 PF14559 TPR_19: Tetratricopep 98.8 1.1E-08 2.4E-13 74.6 6.9 67 12-78 1-67 (68)
94 TIGR02917 PEP_TPR_lipo putativ 98.8 7.3E-08 1.6E-12 103.0 15.8 114 3-116 126-239 (899)
95 PRK10866 outer membrane biogen 98.8 2.5E-07 5.4E-12 85.3 16.5 119 2-120 32-177 (243)
96 PRK15363 pathogenicity island 98.8 4.6E-08 9.9E-13 82.8 10.6 92 29-120 27-119 (157)
97 PRK11447 cellulose synthase su 98.8 8.6E-08 1.9E-12 106.9 15.7 110 7-116 356-507 (1157)
98 PF13371 TPR_9: Tetratricopept 98.8 4.2E-08 9.2E-13 72.5 9.1 66 10-75 3-68 (73)
99 KOG0624 dsRNA-activated protei 98.8 1.7E-07 3.6E-12 87.6 14.8 117 4-120 157-273 (504)
100 PRK11447 cellulose synthase su 98.8 9.9E-08 2.2E-12 106.4 16.0 109 5-113 306-428 (1157)
101 TIGR02917 PEP_TPR_lipo putativ 98.8 9.9E-08 2.1E-12 102.0 15.5 114 5-119 773-886 (899)
102 PF13371 TPR_9: Tetratricopept 98.8 3E-08 6.5E-13 73.3 8.0 71 43-113 2-72 (73)
103 PRK10049 pgaA outer membrane p 98.8 1.5E-07 3.4E-12 100.6 16.2 109 5-113 362-470 (765)
104 PRK11788 tetratricopeptide rep 98.8 1.9E-07 4.2E-12 91.4 15.4 98 7-104 185-283 (389)
105 PF12688 TPR_5: Tetratrico pep 98.8 2.4E-07 5.2E-12 75.6 13.3 95 3-97 2-102 (120)
106 KOG2003 TPR repeat-containing 98.8 2.8E-08 6E-13 95.6 8.8 117 3-119 491-607 (840)
107 PLN02789 farnesyltranstransfer 98.7 2.3E-07 5.1E-12 88.7 14.8 110 11-120 46-158 (320)
108 PRK11788 tetratricopeptide rep 98.7 1.9E-07 4.1E-12 91.4 14.6 114 5-118 110-228 (389)
109 KOG4162 Predicted calmodulin-b 98.7 1E-07 2.2E-12 97.0 12.2 103 3-105 685-789 (799)
110 KOG3060 Uncharacterized conser 98.7 4.1E-07 9E-12 81.9 14.5 109 5-113 89-197 (289)
111 KOG1308 Hsp70-interacting prot 98.7 7E-09 1.5E-13 96.8 3.4 111 2-113 114-224 (377)
112 PF14559 TPR_19: Tetratricopep 98.7 6.5E-08 1.4E-12 70.4 7.2 67 46-112 1-67 (68)
113 PF09976 TPR_21: Tetratricopep 98.7 2.3E-07 5.1E-12 78.4 11.6 92 4-95 13-110 (145)
114 PF06552 TOM20_plant: Plant sp 98.7 2.7E-07 5.9E-12 79.3 11.7 98 18-115 7-125 (186)
115 KOG1173 Anaphase-promoting com 98.7 1.7E-07 3.6E-12 92.6 11.4 112 5-116 417-535 (611)
116 PLN03088 SGT1, suppressor of 98.7 2.1E-07 4.5E-12 90.7 12.1 82 3-84 37-118 (356)
117 PLN03098 LPA1 LOW PSII ACCUMUL 98.7 1.1E-07 2.4E-12 92.8 9.7 63 3-65 76-141 (453)
118 CHL00033 ycf3 photosystem I as 98.6 2.6E-07 5.5E-12 80.1 10.6 112 7-118 4-120 (168)
119 COG5010 TadD Flp pilus assembl 98.6 4.2E-07 9.1E-12 82.3 11.9 110 6-115 70-179 (257)
120 PLN03098 LPA1 LOW PSII ACCUMUL 98.6 6.2E-07 1.3E-11 87.7 12.9 69 31-99 70-141 (453)
121 KOG0543 FKBP-type peptidyl-pro 98.6 5.8E-07 1.3E-11 86.1 11.9 94 5-98 260-354 (397)
122 COG4785 NlpI Lipoprotein NlpI, 98.6 2.7E-07 5.9E-12 81.3 8.8 115 3-117 66-180 (297)
123 PRK14574 hmsH outer membrane p 98.6 8.5E-07 1.8E-11 94.6 14.3 112 2-113 34-145 (822)
124 KOG1156 N-terminal acetyltrans 98.6 6E-07 1.3E-11 90.0 12.1 117 4-120 9-125 (700)
125 PF13429 TPR_15: Tetratricopep 98.6 4E-07 8.7E-12 85.5 10.5 115 6-120 114-230 (280)
126 PRK10153 DNA-binding transcrip 98.5 2.1E-06 4.5E-11 87.4 15.1 110 4-114 341-463 (517)
127 KOG0553 TPR repeat-containing 98.5 4.9E-07 1.1E-11 83.4 9.1 93 5-97 118-213 (304)
128 cd00189 TPR Tetratricopeptide 98.5 1.9E-06 4.2E-11 64.4 10.8 82 38-119 2-83 (100)
129 COG4783 Putative Zn-dependent 98.5 2.7E-06 5.8E-11 83.1 14.2 110 6-115 344-453 (484)
130 KOG0550 Molecular chaperone (D 98.5 5.2E-07 1.1E-11 86.2 8.8 119 2-120 203-337 (486)
131 cd05804 StaR_like StaR_like; a 98.5 2.4E-06 5.2E-11 82.6 13.1 97 5-101 117-217 (355)
132 KOG1128 Uncharacterized conser 98.4 5.7E-07 1.2E-11 91.2 8.5 111 2-112 485-595 (777)
133 PRK14574 hmsH outer membrane p 98.4 2.9E-06 6.3E-11 90.5 14.4 111 5-116 105-215 (822)
134 KOG2002 TPR-containing nuclear 98.4 2.2E-06 4.7E-11 89.4 12.6 114 4-117 272-389 (1018)
135 KOG1310 WD40 repeat protein [G 98.4 6.5E-07 1.4E-11 87.8 8.3 109 3-111 375-486 (758)
136 PF09295 ChAPs: ChAPs (Chs5p-A 98.4 3.2E-06 6.9E-11 82.8 13.1 88 8-95 206-293 (395)
137 KOG1125 TPR repeat-containing 98.4 1.7E-06 3.6E-11 85.8 11.1 98 5-102 288-385 (579)
138 TIGR00540 hemY_coli hemY prote 98.4 1.1E-05 2.3E-10 80.3 16.6 118 3-120 85-203 (409)
139 cd05804 StaR_like StaR_like; a 98.4 1.2E-05 2.5E-10 77.8 16.3 101 4-104 45-182 (355)
140 PRK02603 photosystem I assembl 98.4 1.8E-06 4E-11 75.1 9.6 87 33-119 32-121 (172)
141 PRK11906 transcriptional regul 98.4 6.8E-06 1.5E-10 80.6 14.3 111 4-114 257-382 (458)
142 PF13424 TPR_12: Tetratricopep 98.4 3.8E-07 8.2E-12 68.4 4.4 65 35-99 4-75 (78)
143 KOG2076 RNA polymerase III tra 98.4 3E-06 6.4E-11 87.8 12.1 98 3-100 415-513 (895)
144 PF09976 TPR_21: Tetratricopep 98.4 1.6E-05 3.4E-10 67.2 14.3 93 4-97 50-145 (145)
145 PRK11906 transcriptional regul 98.4 6.2E-06 1.4E-10 80.8 13.0 91 15-105 317-407 (458)
146 KOG1129 TPR repeat-containing 98.3 1.3E-06 2.7E-11 81.4 7.6 94 6-99 294-387 (478)
147 TIGR02795 tol_pal_ybgF tol-pal 98.3 5.7E-06 1.2E-10 66.3 10.7 84 36-119 2-91 (119)
148 PRK14720 transcript cleavage f 98.3 8.2E-06 1.8E-10 86.8 13.5 112 3-116 32-162 (906)
149 KOG2002 TPR-containing nuclear 98.3 8.9E-06 1.9E-10 85.0 12.7 114 1-114 306-424 (1018)
150 KOG1173 Anaphase-promoting com 98.3 7.5E-06 1.6E-10 81.2 11.4 115 6-120 384-505 (611)
151 PF13424 TPR_12: Tetratricopep 98.3 2.6E-06 5.5E-11 63.8 6.2 64 2-65 5-75 (78)
152 KOG3060 Uncharacterized conser 98.3 3.9E-05 8.4E-10 69.4 14.6 113 8-120 126-241 (289)
153 KOG1129 TPR repeat-containing 98.2 5.1E-06 1.1E-10 77.5 9.1 118 3-120 257-374 (478)
154 TIGR00540 hemY_coli hemY prote 98.2 1.8E-05 3.8E-10 78.6 13.3 115 4-119 265-385 (409)
155 COG2956 Predicted N-acetylgluc 98.2 2.4E-05 5.2E-10 73.0 12.8 116 5-120 144-265 (389)
156 PRK10747 putative protoheme IX 98.2 6.6E-05 1.4E-09 74.3 16.4 117 3-120 85-203 (398)
157 COG4235 Cytochrome c biogenesi 98.2 3.3E-05 7.2E-10 71.7 13.1 104 16-119 136-242 (287)
158 COG4105 ComL DNA uptake lipopr 98.2 8.7E-05 1.9E-09 67.6 15.4 103 2-104 34-150 (254)
159 PF12569 NARP1: NMDA receptor- 98.2 5.3E-05 1.2E-09 76.9 15.5 80 37-116 195-274 (517)
160 KOG1840 Kinesin light chain [C 98.1 1.3E-05 2.8E-10 80.7 10.5 98 3-100 242-355 (508)
161 KOG1174 Anaphase-promoting com 98.1 1.3E-05 2.8E-10 76.9 9.9 115 5-119 235-383 (564)
162 KOG1840 Kinesin light chain [C 98.1 1.6E-05 3.6E-10 80.0 10.5 97 4-100 201-313 (508)
163 KOG2003 TPR repeat-containing 98.1 2.5E-05 5.5E-10 75.6 10.9 112 3-114 525-636 (840)
164 COG2956 Predicted N-acetylgluc 98.1 6.4E-05 1.4E-09 70.2 13.1 104 2-105 180-284 (389)
165 KOG1174 Anaphase-promoting com 98.1 2.3E-05 5E-10 75.2 10.3 108 3-110 301-408 (564)
166 KOG4234 TPR repeat-containing 98.1 2E-05 4.4E-10 68.8 9.0 68 5-72 137-204 (271)
167 PRK10747 putative protoheme IX 98.1 6E-05 1.3E-09 74.6 13.7 113 4-120 265-377 (398)
168 COG4700 Uncharacterized protei 98.1 9.9E-05 2.2E-09 63.9 12.9 101 4-104 91-194 (251)
169 PRK15331 chaperone protein Sic 98.1 2.4E-05 5.1E-10 66.8 8.7 89 32-120 33-121 (165)
170 PF12895 Apc3: Anaphase-promot 98.0 8.7E-06 1.9E-10 62.0 5.4 58 4-62 27-84 (84)
171 PRK14720 transcript cleavage f 98.0 9E-05 2E-09 79.0 14.2 112 3-115 117-268 (906)
172 KOG0495 HAT repeat protein [RN 98.0 6.5E-05 1.4E-09 75.8 12.3 107 13-120 629-735 (913)
173 KOG1127 TPR repeat-containing 98.0 7E-05 1.5E-09 78.6 12.9 104 1-104 1-108 (1238)
174 PF12688 TPR_5: Tetratrico pep 98.0 4.2E-05 9.2E-10 62.4 9.2 83 37-119 2-90 (120)
175 KOG4162 Predicted calmodulin-b 98.0 7E-05 1.5E-09 76.8 12.7 115 6-120 654-770 (799)
176 PF09295 ChAPs: ChAPs (Chs5p-A 98.0 0.0001 2.3E-09 72.2 13.2 107 11-120 178-284 (395)
177 PF13525 YfiO: Outer membrane 98.0 0.00029 6.4E-09 63.0 15.1 105 3-107 43-178 (203)
178 PF13428 TPR_14: Tetratricopep 97.9 2E-05 4.4E-10 52.3 5.2 42 37-78 2-43 (44)
179 PF03704 BTAD: Bacterial trans 97.9 0.0003 6.6E-09 59.2 13.5 95 4-98 8-124 (146)
180 cd06472 ACD_ScHsp26_like Alpha 97.9 5.1E-05 1.1E-09 59.0 7.9 76 175-250 1-92 (92)
181 KOG4340 Uncharacterized conser 97.9 0.00015 3.4E-09 67.0 12.0 111 11-125 19-129 (459)
182 KOG1128 Uncharacterized conser 97.9 3.3E-05 7.2E-10 78.7 8.2 112 8-120 430-569 (777)
183 PF12968 DUF3856: Domain of Un 97.9 0.00016 3.5E-09 57.9 10.3 96 4-99 11-129 (144)
184 KOG1127 TPR repeat-containing 97.9 3.7E-05 8.1E-10 80.6 8.5 113 5-117 565-677 (1238)
185 PF14938 SNAP: Soluble NSF att 97.9 0.00011 2.5E-09 69.1 11.2 103 2-104 114-230 (282)
186 PF00515 TPR_1: Tetratricopept 97.9 2.2E-05 4.8E-10 48.8 4.1 32 71-102 2-33 (34)
187 COG0071 IbpA Molecular chapero 97.9 7.1E-05 1.5E-09 63.4 8.3 79 175-253 42-135 (146)
188 PF13431 TPR_17: Tetratricopep 97.8 2.2E-05 4.7E-10 49.1 3.6 32 59-90 2-33 (34)
189 KOG3785 Uncharacterized conser 97.8 0.00013 2.8E-09 68.9 10.1 97 10-110 30-127 (557)
190 PF07719 TPR_2: Tetratricopept 97.8 4.4E-05 9.5E-10 47.2 4.8 33 71-103 2-34 (34)
191 COG3118 Thioredoxin domain-con 97.8 0.0008 1.7E-08 62.4 14.9 98 4-101 136-267 (304)
192 PRK10866 outer membrane biogen 97.8 0.00099 2.1E-08 61.4 15.6 107 4-110 71-215 (243)
193 PF13431 TPR_17: Tetratricopep 97.8 2.5E-05 5.5E-10 48.8 3.2 34 24-57 1-34 (34)
194 PF04733 Coatomer_E: Coatomer 97.8 0.00021 4.4E-09 67.6 10.4 90 17-106 182-272 (290)
195 PRK10803 tol-pal system protei 97.7 0.00035 7.5E-09 65.1 11.4 82 36-117 142-230 (263)
196 KOG0495 HAT repeat protein [RN 97.7 0.00039 8.6E-09 70.3 12.2 111 4-114 653-763 (913)
197 KOG3785 Uncharacterized conser 97.7 0.00035 7.5E-09 66.1 10.7 114 6-119 61-200 (557)
198 PF14853 Fis1_TPR_C: Fis1 C-te 97.7 0.00022 4.8E-09 49.2 7.1 49 71-119 2-50 (53)
199 PF00515 TPR_1: Tetratricopept 97.7 7.8E-05 1.7E-09 46.2 4.5 32 37-68 2-33 (34)
200 PF12569 NARP1: NMDA receptor- 97.7 0.00051 1.1E-08 69.9 12.7 96 5-100 197-292 (517)
201 PF13428 TPR_14: Tetratricopep 97.7 9.7E-05 2.1E-09 48.9 5.0 43 70-112 1-43 (44)
202 KOG1156 N-terminal acetyltrans 97.7 0.00042 9E-09 70.1 11.5 91 8-98 81-171 (700)
203 PF14938 SNAP: Soluble NSF att 97.6 0.00031 6.8E-09 66.1 9.2 95 7-101 79-186 (282)
204 KOG4648 Uncharacterized conser 97.6 0.00011 2.4E-09 69.1 5.9 81 39-119 100-180 (536)
205 PF07719 TPR_2: Tetratricopept 97.6 0.0002 4.3E-09 44.2 5.1 32 37-68 2-33 (34)
206 PF04733 Coatomer_E: Coatomer 97.6 0.00066 1.4E-08 64.2 10.9 113 7-119 136-250 (290)
207 cd06464 ACD_sHsps-like Alpha-c 97.6 0.00037 8E-09 53.1 7.4 74 177-250 1-88 (88)
208 KOG2376 Signal recognition par 97.5 0.0009 2E-08 67.1 11.7 100 3-105 13-145 (652)
209 cd06471 ACD_LpsHSP_like Group 97.5 0.00036 7.7E-09 54.2 7.3 75 175-250 2-93 (93)
210 PF00011 HSP20: Hsp20/alpha cr 97.5 0.00057 1.2E-08 53.9 8.2 77 177-253 1-90 (102)
211 KOG2376 Signal recognition par 97.5 0.0013 2.8E-08 66.0 12.1 40 74-116 83-122 (652)
212 PRK10153 DNA-binding transcrip 97.5 0.00058 1.3E-08 69.7 10.0 89 16-105 398-488 (517)
213 KOG3364 Membrane protein invol 97.5 0.0024 5.3E-08 52.5 11.4 86 35-120 31-121 (149)
214 KOG1130 Predicted G-alpha GTPa 97.4 8.5E-05 1.8E-09 71.4 3.0 97 3-99 196-304 (639)
215 KOG4340 Uncharacterized conser 97.4 0.0006 1.3E-08 63.2 7.9 63 3-65 145-207 (459)
216 PF13512 TPR_18: Tetratricopep 97.4 0.0013 2.9E-08 54.9 9.3 70 36-105 10-82 (142)
217 KOG2471 TPR repeat-containing 97.4 0.0004 8.6E-09 68.2 7.0 112 4-115 242-380 (696)
218 PF15015 NYD-SP12_N: Spermatog 97.3 0.0015 3.2E-08 63.2 9.9 93 5-97 179-289 (569)
219 COG3071 HemY Uncharacterized e 97.3 0.0083 1.8E-07 57.7 14.6 119 2-120 84-203 (400)
220 KOG0546 HSP90 co-chaperone CPR 97.3 0.00037 8.1E-09 65.9 5.3 117 4-120 224-359 (372)
221 KOG1130 Predicted G-alpha GTPa 97.3 0.00083 1.8E-08 64.8 7.7 118 3-120 236-371 (639)
222 KOG2053 Mitochondrial inherita 97.3 0.0057 1.2E-07 64.1 14.2 107 8-115 15-121 (932)
223 COG0457 NrfG FOG: TPR repeat [ 97.3 0.01 2.2E-07 50.8 14.1 98 5-102 98-199 (291)
224 COG4785 NlpI Lipoprotein NlpI, 97.2 0.00094 2E-08 59.3 6.7 72 36-107 65-136 (297)
225 PRK10941 hypothetical protein; 97.2 0.0039 8.4E-08 58.2 11.2 77 37-113 182-258 (269)
226 PF06552 TOM20_plant: Plant sp 97.2 0.0029 6.3E-08 54.7 9.5 69 3-71 26-115 (186)
227 PF13181 TPR_8: Tetratricopept 97.1 0.0007 1.5E-08 41.7 3.9 32 71-102 2-33 (34)
228 COG2976 Uncharacterized protei 97.1 0.01 2.3E-07 51.9 12.2 98 5-103 92-192 (207)
229 PF04781 DUF627: Protein of un 97.1 0.0051 1.1E-07 49.0 9.3 92 8-99 2-107 (111)
230 COG0457 NrfG FOG: TPR repeat [ 97.1 0.013 2.7E-07 50.2 13.0 92 11-102 139-234 (291)
231 KOG4814 Uncharacterized conser 97.1 0.0048 1E-07 62.5 11.1 95 5-99 357-457 (872)
232 PRK10941 hypothetical protein; 97.1 0.0056 1.2E-07 57.1 10.9 77 4-80 183-259 (269)
233 KOG0545 Aryl-hydrocarbon recep 97.1 0.0047 1E-07 55.9 9.8 71 5-75 233-303 (329)
234 COG1729 Uncharacterized protei 97.0 0.0051 1.1E-07 56.6 9.9 82 39-120 144-231 (262)
235 PF09613 HrpB1_HrpK: Bacterial 97.0 0.059 1.3E-06 46.0 15.5 109 4-114 12-120 (160)
236 cd06479 ACD_HspB7_like Alpha c 96.9 0.0051 1.1E-07 46.5 7.5 72 179-250 4-81 (81)
237 PF05843 Suf: Suppressor of fo 96.9 0.016 3.5E-07 54.5 12.5 100 5-104 4-104 (280)
238 KOG4379 Uncharacterized conser 96.9 0.0017 3.7E-08 62.9 5.7 85 175-263 291-378 (596)
239 PF13181 TPR_8: Tetratricopept 96.9 0.002 4.3E-08 39.6 4.2 32 37-68 2-33 (34)
240 cd06475 ACD_HspB1_like Alpha c 96.9 0.0052 1.1E-07 47.1 7.3 72 177-248 4-84 (86)
241 KOG2796 Uncharacterized conser 96.8 0.0069 1.5E-07 55.5 8.6 99 6-104 216-320 (366)
242 cd06497 ACD_alphaA-crystallin_ 96.8 0.0068 1.5E-07 46.4 7.2 72 179-250 6-86 (86)
243 KOG0551 Hsp90 co-chaperone CNS 96.8 0.012 2.6E-07 55.5 10.1 63 5-67 122-184 (390)
244 KOG4555 TPR repeat-containing 96.7 0.01 2.2E-07 48.7 8.1 66 38-103 45-110 (175)
245 PF03704 BTAD: Bacterial trans 96.7 0.013 2.8E-07 49.1 9.3 61 4-64 64-124 (146)
246 COG4700 Uncharacterized protei 96.7 0.046 1E-06 47.7 12.5 117 3-120 125-248 (251)
247 PF13174 TPR_6: Tetratricopept 96.7 0.0031 6.7E-08 38.3 4.0 31 72-102 2-32 (33)
248 KOG4642 Chaperone-dependent E3 96.7 0.002 4.4E-08 58.0 4.3 76 41-116 15-90 (284)
249 KOG4151 Myosin assembly protei 96.7 0.0083 1.8E-07 62.3 9.0 115 3-117 54-174 (748)
250 KOG3824 Huntingtin interacting 96.6 0.0065 1.4E-07 56.7 7.4 74 5-78 119-192 (472)
251 cd06526 metazoan_ACD Alpha-cry 96.6 0.0078 1.7E-07 45.7 6.8 68 183-250 7-83 (83)
252 KOG1941 Acetylcholine receptor 96.6 0.0064 1.4E-07 58.0 7.3 96 4-99 124-235 (518)
253 COG3071 HemY Uncharacterized e 96.6 0.042 9E-07 53.0 12.7 110 6-119 267-376 (400)
254 PF14853 Fis1_TPR_C: Fis1 C-te 96.6 0.011 2.3E-07 40.9 6.5 42 37-78 2-43 (53)
255 PF10300 DUF3808: Protein of u 96.6 0.014 3E-07 59.1 10.1 93 6-98 271-375 (468)
256 cd06498 ACD_alphaB-crystallin_ 96.6 0.011 2.5E-07 44.9 7.3 72 180-251 4-84 (84)
257 COG4105 ComL DNA uptake lipopr 96.6 0.12 2.6E-06 47.4 15.1 111 3-113 72-210 (254)
258 KOG3081 Vesicle coat complex C 96.5 0.05 1.1E-06 50.0 12.2 78 39-116 172-253 (299)
259 smart00028 TPR Tetratricopepti 96.5 0.0051 1.1E-07 35.9 4.0 32 71-102 2-33 (34)
260 KOG2796 Uncharacterized conser 96.5 0.042 9E-07 50.5 11.3 116 5-120 180-302 (366)
261 KOG4507 Uncharacterized conser 96.5 0.0075 1.6E-07 60.6 7.0 106 8-113 613-719 (886)
262 PF13174 TPR_6: Tetratricopept 96.4 0.0066 1.4E-07 36.8 4.2 31 38-68 2-32 (33)
263 KOG3824 Huntingtin interacting 96.4 0.013 2.8E-07 54.8 7.7 72 41-112 121-192 (472)
264 cd06478 ACD_HspB4-5-6 Alpha-cr 96.3 0.019 4.2E-07 43.5 7.1 71 180-250 4-83 (83)
265 KOG2396 HAT (Half-A-TPR) repea 96.3 0.061 1.3E-06 53.4 12.1 91 19-109 88-179 (568)
266 PF10300 DUF3808: Protein of u 96.3 0.041 8.9E-07 55.7 11.4 97 14-110 245-345 (468)
267 KOG0376 Serine-threonine phosp 96.2 0.006 1.3E-07 60.1 5.0 77 6-82 42-118 (476)
268 PF09986 DUF2225: Uncharacteri 96.2 0.065 1.4E-06 48.4 11.4 92 13-104 88-199 (214)
269 PF05843 Suf: Suppressor of fo 96.2 0.091 2E-06 49.4 12.4 107 5-111 38-148 (280)
270 KOG3081 Vesicle coat complex C 96.2 0.084 1.8E-06 48.5 11.5 91 15-105 186-277 (299)
271 PRK04841 transcriptional regul 96.2 0.059 1.3E-06 58.9 12.8 94 6-99 456-560 (903)
272 cd06470 ACD_IbpA-B_like Alpha- 96.1 0.036 7.9E-07 42.7 8.0 73 176-250 3-90 (90)
273 KOG1915 Cell cycle control pro 96.1 0.088 1.9E-06 52.1 12.1 101 5-105 76-176 (677)
274 PF04184 ST7: ST7 protein; In 96.0 0.069 1.5E-06 53.2 11.1 56 41-96 264-321 (539)
275 PRK04841 transcriptional regul 96.0 0.057 1.2E-06 59.0 11.9 96 5-100 494-603 (903)
276 COG4976 Predicted methyltransf 96.0 0.01 2.2E-07 53.2 4.8 59 46-104 5-63 (287)
277 PF13176 TPR_7: Tetratricopept 96.0 0.015 3.2E-07 36.5 4.3 23 73-95 2-24 (36)
278 PLN03081 pentatricopeptide (PP 96.0 0.09 1.9E-06 55.9 12.9 91 7-99 467-557 (697)
279 KOG1586 Protein required for f 96.0 0.11 2.5E-06 46.8 11.2 100 6-105 117-230 (288)
280 PF10579 Rapsyn_N: Rapsyn N-te 96.0 0.07 1.5E-06 39.8 8.2 64 2-65 6-72 (80)
281 PRK10743 heat shock protein Ib 95.9 0.047 1E-06 45.6 8.2 75 175-251 36-124 (137)
282 PF13176 TPR_7: Tetratricopept 95.9 0.012 2.7E-07 36.9 3.7 29 38-66 1-29 (36)
283 smart00028 TPR Tetratricopepti 95.9 0.014 2.9E-07 34.0 3.7 32 37-68 2-33 (34)
284 KOG2053 Mitochondrial inherita 95.9 0.14 3.1E-06 54.1 13.1 100 5-105 46-145 (932)
285 PRK13184 pknD serine/threonine 95.9 0.081 1.8E-06 57.4 11.8 110 9-119 482-601 (932)
286 PLN03218 maturation of RBCL 1; 95.8 0.25 5.4E-06 54.9 15.7 88 10-97 657-746 (1060)
287 PF04184 ST7: ST7 protein; In 95.8 0.22 4.8E-06 49.7 13.3 101 9-111 175-302 (539)
288 cd06476 ACD_HspB2_like Alpha c 95.7 0.055 1.2E-06 41.0 7.3 70 181-250 5-83 (83)
289 PLN03218 maturation of RBCL 1; 95.7 0.27 5.8E-06 54.6 15.4 89 9-98 549-642 (1060)
290 cd06481 ACD_HspB9_like Alpha c 95.6 0.055 1.2E-06 41.4 6.8 68 181-248 5-85 (87)
291 PLN03081 pentatricopeptide (PP 95.5 0.089 1.9E-06 56.0 10.5 60 5-65 293-354 (697)
292 TIGR02561 HrpB1_HrpK type III 95.5 0.17 3.7E-06 42.6 9.8 84 4-87 12-95 (153)
293 PF14561 TPR_20: Tetratricopep 95.5 0.17 3.6E-06 39.0 9.1 49 21-69 7-55 (90)
294 KOG2610 Uncharacterized conser 95.4 0.11 2.5E-06 49.2 9.6 87 8-94 109-233 (491)
295 PF10602 RPN7: 26S proteasome 95.4 0.25 5.5E-06 43.1 11.3 97 4-100 38-143 (177)
296 KOG1070 rRNA processing protei 95.4 0.17 3.7E-06 55.9 11.9 105 8-112 1536-1642(1710)
297 COG4976 Predicted methyltransf 95.3 0.032 7E-07 50.1 5.4 60 10-69 3-62 (287)
298 PRK11597 heat shock chaperone 95.3 0.092 2E-06 44.1 7.8 74 176-251 35-122 (142)
299 KOG1585 Protein required for f 95.3 0.59 1.3E-05 42.7 13.2 100 3-102 32-142 (308)
300 COG2912 Uncharacterized conser 95.3 0.11 2.4E-06 48.0 8.8 74 39-112 184-257 (269)
301 PF14561 TPR_20: Tetratricopep 95.2 0.19 4.1E-06 38.7 8.8 65 55-119 7-73 (90)
302 KOG1941 Acetylcholine receptor 95.1 0.098 2.1E-06 50.1 8.2 95 5-99 165-275 (518)
303 KOG1915 Cell cycle control pro 95.1 0.31 6.8E-06 48.4 11.8 105 13-118 377-485 (677)
304 PLN03077 Protein ECB2; Provisi 95.1 0.22 4.8E-06 54.3 12.2 103 9-114 596-701 (857)
305 KOG1586 Protein required for f 95.1 0.39 8.5E-06 43.5 11.4 95 10-104 81-188 (288)
306 KOG1585 Protein required for f 95.1 0.17 3.8E-06 46.0 9.2 94 6-99 114-219 (308)
307 KOG2471 TPR repeat-containing 95.0 0.039 8.5E-07 54.6 5.4 78 6-83 287-382 (696)
308 PF07079 DUF1347: Protein of u 94.8 0.73 1.6E-05 45.6 13.2 69 46-118 472-544 (549)
309 cd06482 ACD_HspB10 Alpha cryst 94.5 0.16 3.6E-06 38.8 6.6 66 181-246 6-83 (87)
310 PF08190 PIH1: pre-RNA process 94.5 0.17 3.7E-06 48.5 8.4 65 181-248 259-326 (328)
311 COG2912 Uncharacterized conser 94.3 0.32 6.9E-06 45.1 9.1 75 6-80 185-259 (269)
312 PLN03077 Protein ECB2; Provisi 94.2 0.62 1.3E-05 50.9 12.8 103 7-111 559-665 (857)
313 PF12862 Apc5: Anaphase-promot 94.1 0.37 8.1E-06 37.3 8.2 56 11-66 7-71 (94)
314 PF13281 DUF4071: Domain of un 94.1 1.5 3.2E-05 42.9 13.9 108 6-113 183-348 (374)
315 cd06477 ACD_HspB3_Like Alpha c 93.9 0.45 9.8E-06 36.0 7.9 68 180-247 4-80 (83)
316 KOG3364 Membrane protein invol 93.8 0.45 9.8E-06 39.4 8.2 72 4-75 34-110 (149)
317 PF13374 TPR_10: Tetratricopep 93.8 0.15 3.4E-06 32.2 4.6 28 38-65 4-31 (42)
318 KOG1070 rRNA processing protei 93.7 1 2.2E-05 50.2 12.8 99 4-102 1566-1666(1710)
319 COG5191 Uncharacterized conser 93.7 0.17 3.8E-06 47.5 6.3 85 25-109 96-181 (435)
320 KOG1308 Hsp70-interacting prot 93.6 0.018 3.9E-07 54.6 -0.2 73 47-119 125-197 (377)
321 KOG4507 Uncharacterized conser 93.6 0.34 7.4E-06 49.2 8.5 74 5-78 645-718 (886)
322 PF02259 FAT: FAT domain; Int 93.5 1.9 4.2E-05 41.2 13.7 118 2-119 146-307 (352)
323 PF04910 Tcf25: Transcriptiona 93.5 1 2.2E-05 44.0 11.7 79 27-105 31-139 (360)
324 COG3914 Spy Predicted O-linked 93.3 1.1 2.4E-05 45.6 11.6 102 9-110 74-182 (620)
325 COG0790 FOG: TPR repeat, SEL1 93.2 2.8 6.1E-05 39.2 14.0 96 4-101 111-222 (292)
326 KOG3617 WD40 and TPR repeat-co 93.1 1.2 2.6E-05 47.1 11.8 96 4-99 860-996 (1416)
327 PF12862 Apc5: Anaphase-promot 92.9 0.5 1.1E-05 36.5 7.0 56 46-101 8-72 (94)
328 PF14863 Alkyl_sulf_dimr: Alky 92.8 0.41 8.8E-06 40.2 6.7 48 3-50 71-118 (141)
329 PF02259 FAT: FAT domain; Int 92.7 1.7 3.7E-05 41.5 12.1 98 5-102 187-341 (352)
330 KOG0530 Protein farnesyltransf 92.6 2.3 5E-05 39.3 11.6 102 14-115 55-158 (318)
331 PF13281 DUF4071: Domain of un 92.5 1.8 3.9E-05 42.3 11.7 97 7-103 146-259 (374)
332 PF13374 TPR_10: Tetratricopep 92.5 0.31 6.6E-06 30.8 4.5 30 2-31 2-31 (42)
333 PF09613 HrpB1_HrpK: Bacterial 92.4 2.1 4.6E-05 36.6 10.6 84 37-120 11-94 (160)
334 KOG2610 Uncharacterized conser 92.2 1.1 2.3E-05 42.9 9.2 101 8-108 181-287 (491)
335 COG3898 Uncharacterized membra 92.1 1.9 4E-05 42.1 10.9 90 6-97 124-215 (531)
336 PF12968 DUF3856: Domain of Un 92.1 2.9 6.2E-05 34.0 10.3 83 37-119 8-109 (144)
337 COG3629 DnrI DNA-binding trans 92.0 2 4.4E-05 40.2 10.9 64 36-99 153-216 (280)
338 KOG2047 mRNA splicing factor [ 92.0 2.5 5.5E-05 43.6 12.2 110 8-117 483-599 (835)
339 COG3898 Uncharacterized membra 91.9 4.2 9.1E-05 39.7 13.0 97 11-109 197-301 (531)
340 KOG1550 Extracellular protein 91.8 2.5 5.3E-05 43.8 12.4 81 16-98 263-356 (552)
341 PF08631 SPO22: Meiosis protei 91.7 6.6 0.00014 36.7 14.4 100 2-101 35-152 (278)
342 KOG1550 Extracellular protein 91.7 3 6.4E-05 43.2 13.0 91 6-100 292-394 (552)
343 PF07079 DUF1347: Protein of u 91.7 0.97 2.1E-05 44.8 8.7 77 4-82 464-540 (549)
344 KOG4814 Uncharacterized conser 91.4 0.8 1.7E-05 47.1 8.0 72 38-109 356-433 (872)
345 KOG2047 mRNA splicing factor [ 91.0 4.9 0.00011 41.7 13.0 118 2-119 425-560 (835)
346 PF08424 NRDE-2: NRDE-2, neces 90.9 4.3 9.4E-05 38.9 12.4 83 23-105 6-100 (321)
347 PF10373 EST1_DNA_bind: Est1 D 90.8 1.1 2.3E-05 41.5 8.1 62 55-116 1-62 (278)
348 COG2976 Uncharacterized protei 90.6 5.3 0.00012 35.3 11.4 59 38-96 91-152 (207)
349 PF10516 SHNi-TPR: SHNi-TPR; 90.3 0.48 1E-05 30.2 3.5 29 71-99 2-30 (38)
350 PF05455 GvpH: GvpH; InterPro 90.3 1.8 3.9E-05 37.5 8.1 74 177-253 95-170 (177)
351 cd06480 ACD_HspB8_like Alpha-c 90.2 2 4.2E-05 33.2 7.5 68 180-247 12-88 (91)
352 PRK15180 Vi polysaccharide bio 90.2 2.7 5.8E-05 42.1 10.1 96 9-104 296-391 (831)
353 PF07720 TPR_3: Tetratricopept 90.0 0.96 2.1E-05 28.4 4.7 21 72-92 3-23 (36)
354 PF04910 Tcf25: Transcriptiona 89.6 3.9 8.5E-05 39.9 11.0 99 4-102 105-225 (360)
355 PF10516 SHNi-TPR: SHNi-TPR; 89.6 0.62 1.3E-05 29.7 3.6 30 37-66 2-31 (38)
356 KOG0546 HSP90 co-chaperone CPR 89.4 0.26 5.6E-06 47.1 2.5 78 7-84 280-357 (372)
357 PF09986 DUF2225: Uncharacteri 89.3 2 4.3E-05 38.7 8.1 68 13-80 136-210 (214)
358 PF10373 EST1_DNA_bind: Est1 D 89.1 4.9 0.00011 37.0 11.0 62 21-82 1-62 (278)
359 COG3629 DnrI DNA-binding trans 88.9 2.6 5.6E-05 39.6 8.7 62 4-65 155-216 (280)
360 PF07721 TPR_4: Tetratricopept 88.9 0.57 1.2E-05 26.9 2.9 23 72-94 3-25 (26)
361 PF07720 TPR_3: Tetratricopept 88.6 1.6 3.5E-05 27.4 5.0 29 39-67 4-34 (36)
362 PHA02537 M terminase endonucle 88.3 9.4 0.0002 34.8 11.7 108 12-120 93-227 (230)
363 COG0790 FOG: TPR repeat, SEL1 88.1 12 0.00025 34.9 12.9 81 18-103 171-270 (292)
364 TIGR02561 HrpB1_HrpK type III 88.0 6.5 0.00014 33.2 9.6 83 38-120 12-94 (153)
365 COG4455 ImpE Protein of avirul 87.9 3 6.5E-05 37.6 8.0 59 10-68 9-67 (273)
366 COG3118 Thioredoxin domain-con 87.6 4.4 9.6E-05 38.1 9.3 61 36-96 134-194 (304)
367 PF09670 Cas_Cas02710: CRISPR- 87.5 8.8 0.00019 37.8 12.0 62 3-64 132-197 (379)
368 PF06957 COPI_C: Coatomer (COP 87.3 4.9 0.00011 39.9 10.0 101 4-104 206-334 (422)
369 PF10255 Paf67: RNA polymerase 86.9 3.8 8.3E-05 40.5 8.9 97 5-102 125-231 (404)
370 cd02682 MIT_AAA_Arch MIT: doma 86.8 3 6.4E-05 30.9 6.2 30 2-31 6-35 (75)
371 PRK13184 pknD serine/threonine 86.7 5.6 0.00012 43.6 10.9 89 16-105 533-626 (932)
372 PF11207 DUF2989: Protein of u 86.4 6 0.00013 35.2 9.0 71 19-90 123-198 (203)
373 KOG1839 Uncharacterized protei 86.2 2 4.3E-05 47.7 7.1 98 2-99 973-1086(1236)
374 KOG2396 HAT (Half-A-TPR) repea 86.0 6.7 0.00014 39.5 10.0 65 10-74 112-178 (568)
375 KOG2041 WD40 repeat protein [G 85.9 3.5 7.5E-05 43.1 8.2 82 2-95 796-877 (1189)
376 PF08424 NRDE-2: NRDE-2, neces 85.9 13 0.00028 35.7 12.0 81 18-98 47-130 (321)
377 PF04781 DUF627: Protein of un 85.8 6 0.00013 31.6 7.9 67 42-108 2-82 (111)
378 PF07721 TPR_4: Tetratricopept 85.6 1 2.3E-05 25.7 2.7 24 37-60 2-25 (26)
379 KOG0529 Protein geranylgeranyl 85.5 19 0.00042 35.4 12.7 108 8-115 34-156 (421)
380 PF08631 SPO22: Meiosis protei 85.4 20 0.00043 33.5 12.8 96 12-107 3-124 (278)
381 COG5191 Uncharacterized conser 85.2 1.9 4.1E-05 40.8 5.5 69 7-75 112-181 (435)
382 KOG2561 Adaptor protein NUB1, 85.1 3.4 7.3E-05 40.8 7.4 98 1-98 162-295 (568)
383 KOG1258 mRNA processing protei 85.0 22 0.00049 36.5 13.4 105 5-109 300-405 (577)
384 KOG0686 COP9 signalosome, subu 84.9 6.8 0.00015 38.4 9.3 94 4-97 152-256 (466)
385 PF04053 Coatomer_WDAD: Coatom 84.6 8.7 0.00019 38.6 10.4 88 8-97 267-374 (443)
386 COG3914 Spy Predicted O-linked 84.3 14 0.00029 38.1 11.4 98 13-110 41-142 (620)
387 KOG2581 26S proteasome regulat 84.2 19 0.00042 35.4 11.9 88 38-125 211-304 (493)
388 PF10255 Paf67: RNA polymerase 84.0 2.2 4.8E-05 42.1 5.8 59 39-98 125-192 (404)
389 PF10345 Cohesin_load: Cohesin 83.5 38 0.00083 35.5 15.2 106 3-109 60-180 (608)
390 PF10602 RPN7: 26S proteasome 83.0 13 0.00029 32.3 9.8 65 36-100 36-103 (177)
391 KOG2300 Uncharacterized conser 82.8 28 0.0006 35.2 12.6 91 6-100 371-475 (629)
392 KOG2422 Uncharacterized conser 82.6 29 0.00062 35.8 12.9 93 15-107 251-380 (665)
393 KOG3617 WD40 and TPR repeat-co 82.4 6.7 0.00015 41.9 8.6 78 9-96 807-884 (1416)
394 KOG1310 WD40 repeat protein [G 82.3 4.1 9E-05 41.2 6.8 74 47-120 385-461 (758)
395 COG4649 Uncharacterized protei 82.3 34 0.00073 30.0 12.5 27 72-98 169-195 (221)
396 COG4941 Predicted RNA polymera 82.1 9.8 0.00021 36.5 8.9 92 15-107 309-402 (415)
397 cd02683 MIT_1 MIT: domain cont 81.7 4 8.7E-05 30.4 5.1 30 2-31 6-35 (77)
398 COG3947 Response regulator con 81.6 5.9 0.00013 37.3 7.2 60 37-96 280-339 (361)
399 KOG1839 Uncharacterized protei 81.3 2.8 6.1E-05 46.5 5.8 98 2-99 932-1044(1236)
400 KOG0529 Protein geranylgeranyl 81.2 22 0.00048 35.0 11.2 102 12-113 85-192 (421)
401 PRK15180 Vi polysaccharide bio 80.9 4.5 9.8E-05 40.5 6.5 95 8-102 329-423 (831)
402 PF15015 NYD-SP12_N: Spermatog 80.8 8.9 0.00019 37.9 8.3 79 43-121 183-279 (569)
403 PF11817 Foie-gras_1: Foie gra 80.8 7.7 0.00017 35.7 7.9 62 35-96 177-244 (247)
404 PF09205 DUF1955: Domain of un 80.5 11 0.00024 31.4 7.6 42 23-64 107-148 (161)
405 PF14863 Alkyl_sulf_dimr: Alky 80.5 7.2 0.00016 32.7 6.8 48 37-84 71-118 (141)
406 TIGR03504 FimV_Cterm FimV C-te 80.3 6 0.00013 26.0 5.0 24 74-97 3-26 (44)
407 PF04212 MIT: MIT (microtubule 79.9 4.2 9E-05 29.3 4.7 30 2-31 5-34 (69)
408 cd02682 MIT_AAA_Arch MIT: doma 79.7 9.3 0.0002 28.3 6.4 44 72-115 8-58 (75)
409 KOG2300 Uncharacterized conser 79.6 38 0.00083 34.2 12.3 115 3-120 8-136 (629)
410 PF11207 DUF2989: Protein of u 79.5 8.1 0.00018 34.4 7.1 46 10-55 148-197 (203)
411 PF11817 Foie-gras_1: Foie gra 79.5 14 0.0003 33.9 9.2 50 71-120 179-234 (247)
412 PF10952 DUF2753: Protein of u 79.4 11 0.00023 30.9 7.1 59 4-62 3-76 (140)
413 cd02681 MIT_calpain7_1 MIT: do 78.7 3.7 7.9E-05 30.5 4.0 30 2-31 6-35 (76)
414 cd02680 MIT_calpain7_2 MIT: do 78.1 3.8 8.2E-05 30.4 3.9 29 3-31 7-35 (75)
415 PF10579 Rapsyn_N: Rapsyn N-te 77.2 20 0.00043 26.8 7.5 57 39-95 9-68 (80)
416 TIGR02710 CRISPR-associated pr 77.1 42 0.00092 33.0 11.9 56 5-60 133-195 (380)
417 cd02678 MIT_VPS4 MIT: domain c 77.0 4.3 9.3E-05 29.9 4.0 30 2-31 6-35 (75)
418 smart00386 HAT HAT (Half-A-TPR 77.0 6.9 0.00015 22.6 4.4 28 16-43 1-28 (33)
419 COG3947 Response regulator con 76.6 10 0.00022 35.7 7.1 59 5-63 282-340 (361)
420 COG4455 ImpE Protein of avirul 76.5 11 0.00025 34.0 7.1 75 45-119 10-87 (273)
421 cd02656 MIT MIT: domain contai 75.3 8.9 0.00019 28.0 5.4 29 3-31 7-35 (75)
422 PF07163 Pex26: Pex26 protein; 75.3 56 0.0012 30.7 11.5 114 5-119 38-166 (309)
423 cd02684 MIT_2 MIT: domain cont 74.9 9.5 0.00021 28.2 5.4 30 2-31 6-35 (75)
424 KOG3807 Predicted membrane pro 73.5 56 0.0012 31.5 11.2 90 10-101 192-306 (556)
425 KOG0985 Vesicle coat protein c 73.4 21 0.00045 39.3 9.2 103 5-115 1197-1324(1666)
426 PF07219 HemY_N: HemY protein 73.3 16 0.00034 28.9 6.7 45 4-48 61-105 (108)
427 smart00745 MIT Microtubule Int 73.3 7.2 0.00016 28.6 4.5 27 4-30 10-36 (77)
428 KOG0530 Protein farnesyltransf 73.1 51 0.0011 30.8 10.5 86 16-101 92-178 (318)
429 KOG3783 Uncharacterized conser 72.6 37 0.00079 34.7 10.4 82 37-118 450-539 (546)
430 PRK15490 Vi polysaccharide bio 72.6 48 0.001 34.4 11.5 83 11-95 17-99 (578)
431 KOG4563 Cell cycle-regulated h 72.4 8.4 0.00018 37.2 5.6 29 3-31 42-70 (400)
432 TIGR03504 FimV_Cterm FimV C-te 71.8 8.3 0.00018 25.4 3.9 26 40-65 3-28 (44)
433 PF11846 DUF3366: Domain of un 71.8 23 0.00049 31.0 8.1 50 52-102 127-176 (193)
434 cd02677 MIT_SNX15 MIT: domain 71.3 21 0.00046 26.3 6.5 29 3-31 7-35 (75)
435 KOG2114 Vacuolar assembly/sort 70.2 16 0.00034 39.1 7.5 28 4-31 370-397 (933)
436 KOG1914 mRNA cleavage and poly 70.1 26 0.00057 35.8 8.7 70 27-97 11-80 (656)
437 PF09477 Type_III_YscG: Bacter 69.9 53 0.0011 26.2 8.6 83 7-94 11-93 (116)
438 COG4649 Uncharacterized protei 69.7 27 0.00058 30.6 7.5 75 8-83 138-213 (221)
439 smart00386 HAT HAT (Half-A-TPR 68.8 14 0.00031 21.2 4.4 28 51-78 2-29 (33)
440 KOG0889 Histone acetyltransfer 67.0 67 0.0014 40.1 12.3 110 5-115 2777-2898(3550)
441 KOG0292 Vesicle coat complex C 66.0 80 0.0017 34.4 11.5 102 5-106 994-1120(1202)
442 KOG2422 Uncharacterized conser 64.7 51 0.0011 34.0 9.5 98 5-102 345-451 (665)
443 COG4856 Uncharacterized protei 64.2 18 0.0004 35.1 6.1 81 173-254 55-138 (403)
444 PF10345 Cohesin_load: Cohesin 64.2 90 0.0019 32.7 12.0 89 6-94 305-428 (608)
445 COG5159 RPN6 26S proteasome re 63.6 53 0.0011 31.1 8.7 115 6-120 7-181 (421)
446 PF04190 DUF410: Protein of un 63.2 84 0.0018 29.1 10.3 91 5-95 13-115 (260)
447 PF11846 DUF3366: Domain of un 62.6 32 0.00069 30.0 7.1 49 18-67 127-175 (193)
448 COG2909 MalT ATP-dependent tra 61.6 87 0.0019 34.0 11.0 82 4-85 460-552 (894)
449 COG2015 Alkyl sulfatase and re 61.4 19 0.00041 36.2 5.8 50 38-87 454-503 (655)
450 PF13226 DUF4034: Domain of un 60.0 54 0.0012 30.8 8.3 68 20-87 61-150 (277)
451 KOG4014 Uncharacterized conser 59.9 69 0.0015 28.3 8.3 58 18-79 128-209 (248)
452 PF12854 PPR_1: PPR repeat 59.8 21 0.00046 21.7 3.9 26 36-61 7-32 (34)
453 COG2909 MalT ATP-dependent tra 59.5 1.2E+02 0.0026 33.0 11.6 94 7-100 420-527 (894)
454 TIGR02508 type_III_yscG type I 58.9 49 0.0011 26.1 6.5 41 72-117 41-81 (115)
455 PF04053 Coatomer_WDAD: Coatom 58.7 24 0.00052 35.5 6.2 80 9-93 325-412 (443)
456 PF12739 TRAPPC-Trs85: ER-Golg 58.1 96 0.0021 30.8 10.4 95 4-99 210-329 (414)
457 KOG1463 26S proteasome regulat 57.6 26 0.00056 33.8 5.8 94 7-100 133-239 (411)
458 cd02683 MIT_1 MIT: domain cont 57.4 59 0.0013 24.1 6.6 19 77-95 13-31 (77)
459 PF05053 Menin: Menin; InterP 57.3 27 0.00058 35.9 6.1 24 73-96 321-344 (618)
460 KOG1258 mRNA processing protei 56.3 90 0.002 32.3 9.7 84 19-102 62-146 (577)
461 PF10938 YfdX: YfdX protein; 54.7 1E+02 0.0022 26.2 8.6 95 4-98 4-145 (155)
462 KOG3807 Predicted membrane pro 54.6 1.3E+02 0.0029 29.1 9.9 64 36-99 273-340 (556)
463 COG5159 RPN6 26S proteasome re 53.9 1E+02 0.0022 29.2 8.9 94 7-100 130-236 (421)
464 KOG0739 AAA+-type ATPase [Post 53.8 58 0.0013 31.1 7.3 13 19-31 8-20 (439)
465 KOG0276 Vesicle coat complex C 53.5 32 0.00069 35.7 6.0 32 68-99 664-695 (794)
466 PF15469 Sec5: Exocyst complex 52.8 1.4E+02 0.0029 25.8 9.4 19 48-66 98-116 (182)
467 PF09477 Type_III_YscG: Bacter 51.8 1.2E+02 0.0027 24.2 9.7 74 39-117 9-82 (116)
468 PF08238 Sel1: Sel1 repeat; I 51.4 35 0.00075 20.7 4.0 29 71-99 2-37 (39)
469 KOG1924 RhoA GTPase effector D 49.8 3.7E+02 0.0081 29.1 13.2 18 14-31 377-394 (1102)
470 KOG1497 COP9 signalosome, subu 49.0 1.6E+02 0.0034 28.4 9.4 81 36-117 103-193 (399)
471 KOG4014 Uncharacterized conser 48.7 70 0.0015 28.3 6.5 86 15-103 48-145 (248)
472 smart00671 SEL1 Sel1-like repe 48.6 40 0.00087 19.9 3.9 26 72-97 3-32 (36)
473 PF08311 Mad3_BUB1_I: Mad3/BUB 48.5 1.5E+02 0.0032 24.1 10.1 57 39-97 68-126 (126)
474 PF02064 MAS20: MAS20 protein 48.4 45 0.00098 27.1 5.1 29 6-34 67-95 (121)
475 COG5107 RNA14 Pre-mRNA 3'-end 48.4 3.1E+02 0.0067 27.8 12.0 53 11-63 441-493 (660)
476 PF13041 PPR_2: PPR repeat fam 48.4 48 0.001 21.7 4.6 31 36-66 3-33 (50)
477 PF14098 SSPI: Small, acid-sol 48.3 18 0.0004 25.9 2.5 26 315-340 37-62 (65)
478 PF04212 MIT: MIT (microtubule 47.9 40 0.00088 24.0 4.4 24 74-97 9-32 (69)
479 cd02681 MIT_calpain7_1 MIT: do 47.5 38 0.00082 25.1 4.2 26 73-98 9-34 (76)
480 KOG0687 26S proteasome regulat 47.2 2.5E+02 0.0055 27.1 10.5 96 3-98 105-209 (393)
481 COG4941 Predicted RNA polymera 47.1 97 0.0021 30.0 7.7 72 7-78 334-407 (415)
482 KOG3783 Uncharacterized conser 46.9 1E+02 0.0023 31.5 8.4 80 21-100 252-333 (546)
483 PF01535 PPR: PPR repeat; Int 46.8 35 0.00075 19.3 3.3 23 41-63 5-27 (31)
484 TIGR00756 PPR pentatricopeptid 46.3 49 0.0011 19.0 4.1 25 40-64 4-28 (35)
485 PF09205 DUF1955: Domain of un 46.1 1.8E+02 0.0038 24.4 8.2 34 66-99 116-149 (161)
486 PF13226 DUF4034: Domain of un 45.9 2.6E+02 0.0057 26.3 11.1 112 8-119 6-148 (277)
487 KOG4563 Cell cycle-regulated h 45.7 37 0.00081 33.0 4.8 59 37-95 42-108 (400)
488 PF09797 NatB_MDM20: N-acetylt 45.2 65 0.0014 31.3 6.8 46 15-60 196-241 (365)
489 TIGR03092 SASP_sspI small, aci 45.0 20 0.00044 25.6 2.2 25 315-339 36-60 (65)
490 COG5107 RNA14 Pre-mRNA 3'-end 44.1 62 0.0013 32.6 6.2 70 25-97 291-360 (660)
491 KOG1914 mRNA cleavage and poly 44.0 3.9E+02 0.0085 27.7 13.1 53 47-99 412-464 (656)
492 KOG4459 Membrane-associated pr 42.7 54 0.0012 32.8 5.6 116 4-120 33-183 (471)
493 KOG3591 Alpha crystallins [Pos 42.5 1.6E+02 0.0036 25.5 8.1 72 181-252 70-150 (173)
494 COG4259 Uncharacterized protei 42.5 1.4E+02 0.003 23.6 6.7 44 68-111 70-113 (121)
495 cd02678 MIT_VPS4 MIT: domain c 42.3 1.3E+02 0.0029 21.8 6.7 20 77-96 13-32 (75)
496 cd02679 MIT_spastin MIT: domai 42.2 48 0.001 24.8 4.1 16 17-32 4-19 (79)
497 PF02064 MAS20: MAS20 protein 42.2 68 0.0015 26.1 5.3 39 74-112 67-105 (121)
498 KOG0276 Vesicle coat complex C 41.7 1.3E+02 0.0029 31.4 8.2 83 9-96 644-747 (794)
499 PF01239 PPTA: Protein prenylt 41.5 73 0.0016 18.6 4.6 28 21-48 2-29 (31)
500 KOG1463 26S proteasome regulat 41.4 95 0.0021 30.1 6.8 108 7-117 214-331 (411)
No 1
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=100.00 E-value=6.1e-91 Score=674.39 Aligned_cols=356 Identities=74% Similarity=1.131 Sum_probs=306.0
Q ss_pred ChHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 017264 1 MATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATAC 80 (374)
Q Consensus 1 ma~~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~ 80 (374)
|+..+..+|+.+|..|+|+.|+.+|++||.++|.++.+|++||.||.++|++++|+.++++|+.++|.++.+|+++|.+|
T Consensus 1 ~~~~l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~ 80 (356)
T PLN03088 1 MAKDLEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTAC 80 (356)
T ss_pred CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHH
Confidence 78899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhhcccCCCCCCCCCCccccCCCCCCCCCCCCCccccccccc
Q 017264 81 MKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEETGELQKQPLETGPTNVVSTNNVQPATNISSTEDVETVMDV 160 (374)
Q Consensus 81 ~~lg~~~eA~~~~~~a~~l~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (374)
+.+|+|++|+.+|+++++++|++..+..|+.+|..++.......+..... .++ .+.... +. ..
T Consensus 81 ~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl~~~~~~~~~~~~~--~~~-----~~~~~~---~~-------~~ 143 (356)
T PLN03088 81 MKLEEYQTAKAALEKGASLAPGDSRFTKLIKECDEKIAEEEKDLVQPVPS--DLP-----SSVTAP---PV-------EE 143 (356)
T ss_pred HHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhhccccccccc--ccc-----cccccc---cc-------cc
Confidence 99999999999999999999999999999999999997653332211110 000 000000 00 00
Q ss_pred cccccccCCCCCCcCccccccCCeEEEEEEeCCCCCCceEEEEeeeEEEEEEEcCCCCeeeeccccccccccCceEEEEc
Q 017264 161 SNEAAMAAPARPKYRHEFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVL 240 (374)
Q Consensus 161 ~~~ap~~~~~~~~~r~~W~Qt~~~V~i~i~~k~~~~~~v~v~~~~~~l~v~~~~~~~~~y~~~~~L~~~I~p~~s~~~v~ 240 (374)
....+..++..+++||+||||+++|+|+||+||+.++++.|+|++++|+|+|..++++.|.|.++||++|+|+.|+|+|+
T Consensus 144 ~~~~~~~~~~~~~~r~dWyQs~~~V~i~i~~k~~~~~~~~v~~~~~~l~v~~~~~~~~~y~~~~~L~~~I~p~~s~~~v~ 223 (356)
T PLN03088 144 ADATPVVPPSKPKYRHEFYQKPEEVVVTVFAKGVPAENVNVDFGEQILSVVIEVPGEDAYHLQPRLFGKIIPDKCKYEVL 223 (356)
T ss_pred cccCCCCCCCCCccccceeecCCEEEEEEEecCCChHHcEEEeecCEEEEEEecCCCcceeecccccccccccccEEEEe
Confidence 00111223345579999999999999999999999999999999999999998888889999999999999999999999
Q ss_pred CcEEEEEEeecCCCCCCccccCCCccCCcccCCCCCCCCCCCCCCCCCCCCCCchhHHHHHhhhhhhhcccchHHHHHHH
Q 017264 241 STKVEIRLAKAEPIQWSSLEFSKGAVVPQRVNPPSVSGSPRPTYPSSKPTRVDWDKLEAQVKKEEKEEKLDGDAALNKFF 320 (374)
Q Consensus 241 ~~kiei~L~K~~~~~W~~L~~~~~~~~~~~~~~~~~~~~~~~~~p~s~~~~~dWdk~~~e~~~~~~~e~~~~~~~~~~~f 320 (374)
++||||+|+|+++++|++|+........+...... .....|+||+|+.+++|||||+.++++|+++|++||+++||+||
T Consensus 224 ~~Kiei~l~K~~~~~W~~L~~~~~~~~~~~~~~~~-~~~~~~~~p~~~~~~~dWdk~~~~~~~e~~~e~~~g~~~~~~~f 302 (356)
T PLN03088 224 STKIEIRLAKAEPITWASLEYGKGPAVLPKPNVSS-EVSQRPAYPSSKKKKDDWDKLEAEVKKEEKDEKLDGDAALNKFF 302 (356)
T ss_pred cceEEEEEecCCCCCccccccCCccccccCCCCCc-CcccCCCCCCCCCCCCChhhhhhhhhhhhhccccccchHHHHHH
Confidence 99999999999999999999875432222111111 12446899999877889999999999888888889999999999
Q ss_pred HHHhcCCCHHHHHHhhhhhhhcCCeeeecccccccCceeecCCCCCccccccCC
Q 017264 321 QEIYADADEDTRRAMKKSFVESNGTVLSTNWKEVGSKKVEGSPPDGMEMKKWEY 374 (374)
Q Consensus 321 ~~iY~~~d~d~kram~Ks~~eS~gt~lstnw~~v~~~~~~~~~p~g~~~k~~~~ 374 (374)
||||+||||||||||||||+|||||||||||+|||+|+||++||+|||+|||++
T Consensus 303 ~~iY~~~d~d~rram~KSf~eS~gt~lstnw~~v~~~~~e~~pp~g~e~k~~~~ 356 (356)
T PLN03088 303 REIYQNADEDTRRAMMKSFVESNGTVLSTNWKEVGSKKIEGSPPDGMELKKWEY 356 (356)
T ss_pred HHHHhcCCHHHHHHHHHHhhhcCCeEEeccHHHhcCCccccCCCCCCccccCCC
Confidence 999999999999999999999999999999999999999999999999999985
No 2
>KOG1309 consensus Suppressor of G2 allele of skp1 [Signal transduction mechanisms]
Probab=100.00 E-value=1.1e-71 Score=463.71 Aligned_cols=195 Identities=59% Similarity=0.944 Sum_probs=175.2
Q ss_pred CCcCccccccCCeEEEEEEeCCCCCCceEEEEeeeEEEEEEEcCCCCeeeeccccccccccCceEEEEcCcEEEEEEeec
Q 017264 172 PKYRHEFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVLSTKVEIRLAKA 251 (374)
Q Consensus 172 ~~~r~~W~Qt~~~V~i~i~~k~~~~~~v~v~~~~~~l~v~~~~~~~~~y~~~~~L~~~I~p~~s~~~v~~~kiei~L~K~ 251 (374)
+++|||||||.+.|+|+||.++|..+||.|+|..+.|++.+..++|..|.|.+.|||+|+|+.|+|++.++||||+|.|.
T Consensus 2 ~k~r~DwyQt~~~vvIti~~k~v~~~~v~v~~s~~~l~~~~~~~~g~~~~l~~~L~~~I~pe~~s~k~~stKVEI~L~K~ 81 (196)
T KOG1309|consen 2 MKIRHDWYQTETSVVITIFAKNVPKEDVNVEISENTLSIVIQLPSGSEYNLQLKLYHEIIPEKSSFKVFSTKVEITLAKA 81 (196)
T ss_pred CcccceeecCCceEEEEEEecCCCccceeEEeecceEEEEEecCCchhhhhhHHhcccccccceeeEeeeeeEEEEeccc
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCccccCCCccCCcccCCCCCCCCCCCCCCCCCCCCCCchhHHHHHhhhhhhhcccchHHHHHHHHHHhcCCCHHH
Q 017264 252 EPIQWSSLEFSKGAVVPQRVNPPSVSGSPRPTYPSSKPTRVDWDKLEAQVKKEEKEEKLDGDAALNKFFQEIYADADEDT 331 (374)
Q Consensus 252 ~~~~W~~L~~~~~~~~~~~~~~~~~~~~~~~~~p~s~~~~~dWdk~~~e~~~~~~~e~~~~~~~~~~~f~~iY~~~d~d~ 331 (374)
+.++|..|+.-....+.+.... .....+||+++. ++|||+++.|++++|++++.| ||+||+|||+||++|||||
T Consensus 82 ~~irW~~Le~g~~~~~~~~~~v----s~~~s~~Pssk~-~kdWdkl~~e~~~eEe~e~l~-dAAl~~lF~kiY~~addDv 155 (196)
T KOG1309|consen 82 EIIRWESLEKGKGSAVAPKPNV----SSTASSYPSSKP-AKDWDKLEKEEKKEEEDEKLE-DAALNKLFQKIYSDADDDV 155 (196)
T ss_pred cchhhhhhhcccCccccccccc----ccccccCCCCCc-ccCHHHHHHHhhhhhhccchh-HHHHHHHHHHHHhcCCHHH
Confidence 8999999996222211111100 022348999876 789999999999888888887 8999999999999999999
Q ss_pred HHHhhhhhhhcCCeeeecccccccCceeecCCCCCcccccc
Q 017264 332 RRAMKKSFVESNGTVLSTNWKEVGSKKVEGSPPDGMEMKKW 372 (374)
Q Consensus 332 kram~Ks~~eS~gt~lstnw~~v~~~~~~~~~p~g~~~k~~ 372 (374)
||||||||+|||||||||||+|||+|+||++||+|||+|+|
T Consensus 156 rRAM~KSf~ESnGTvLSTnW~eVg~kkve~~PP~gmE~Kk~ 196 (196)
T KOG1309|consen 156 RRAMMKSFSESNGTVLSTNWSEVGKKKVETKPPDGMEPKKW 196 (196)
T ss_pred HHHHHhhhhhcCCeEEeccHHHhccceeeecCCCCCCcCcC
Confidence 99999999999999999999999999999999999999999
No 3
>COG5091 SGT1 Suppressor of G2 allele of skp1 and related proteins [General function prediction only]
Probab=100.00 E-value=2.7e-56 Score=394.24 Aligned_cols=347 Identities=23% Similarity=0.348 Sum_probs=253.8
Q ss_pred HHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc----------cCHHHHHHHHHHHHHhCC------CCHHH
Q 017264 9 AKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKL----------QNFTEAVADANRAIELEP------SMSKA 72 (374)
Q Consensus 9 g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l----------~~~~~Al~~~~~al~l~p------~~~~a 72 (374)
+..++..++--.|+.+|...+.-.|.|..++...+.|+.++ -....|+..+..||.+.. .++-+
T Consensus 2 ~~~L~D~~e~L~~L~~~~~~~~~~~~NL~~l~~~a~~lEk~~~~Fs~~~s~~~~~n~~e~~d~ALm~Ae~r~D~~~IG~~ 81 (368)
T COG5091 2 YKALYDEKEPLKALHLYDEILKGSPTNLTALIFKAACLEKLYFGFSDWHSDATMENAKELLDKALMTAEGRGDRSKIGLV 81 (368)
T ss_pred ccchhcccchHHHhhhhhhhhccCCcceeEEeehhhhHHHHHhhhhhhhcccChhhHHHHHHHHHHhhhccCCcceeeee
Confidence 34677888889999999999999999977666666666554 356789999999998764 25668
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhhcccCCCCCCCCCCccccCCCCCCCCCCCCCc
Q 017264 73 YWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEETGELQKQPLETGPTNVVSTNNVQPATNISSTE 152 (374)
Q Consensus 73 ~~~lg~~~~~lg~~~eA~~~~~~a~~l~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 152 (374)
.++++++||.+++|+.|..||..|+.+. -+..+..|..+++.+|.............+..|+..+ .......+...+
T Consensus 82 ~~~~~v~~~~ik~Ye~a~~~F~~A~~~~-~~d~L~~We~rLet~L~~~~kkQ~~~Tnk~~I~~vEs-~e~~GD~~~~~S- 158 (368)
T COG5091 82 NFRYFVHFFNIKDYELAQSYFKKAKNLY-VDDTLPLWEDRLETKLNKKNKKQKDSTNKHTIKPVES-IENRGDNNSSHS- 158 (368)
T ss_pred hhhhHHHhhhHHHHHHHHHHHHHHHHHh-hcccchHHHHHHHHHHhHhhHhhccccCCCCCCchhh-hhccCccccccC-
Confidence 8999999999999999999999999984 4456888999988888766322221111111211110 000001111111
Q ss_pred cccccccccccc---cccCCCCCCcCccccccCCeEEEEEEeCCCCCCceEEEEeeeEEEEEEEcCCCCe-eeecccccc
Q 017264 153 DVETVMDVSNEA---AMAAPARPKYRHEFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPGEEA-YHFQPRLFG 228 (374)
Q Consensus 153 ~~~~~~~~~~~a---p~~~~~~~~~r~~W~Qt~~~V~i~i~~k~~~~~~v~v~~~~~~l~v~~~~~~~~~-y~~~~~L~~ 228 (374)
+.+|.. ..+-.+...++|+|.||...+.|.||.+-+..++|.+-++++.|+|+++...+.. +.+.+.||+
T Consensus 159 ------~~sP~~~~~~~qE~~~~~i~yd~s~Ts~t~~ifiy~~pv~deqVs~~~e~NTL~I~~q~~~~~~~~~~~~~Ly~ 232 (368)
T COG5091 159 ------PISPLKIETAPQESPKMEIAYDFSETSDTAIIFIYRPPVGDEQVSPVLEGNTLSISYQPRRLRLWNDITISLYK 232 (368)
T ss_pred ------CCCccccccCcccCccceeeeeccccceeEEEEEecCCCCccccceeecCCcceeeeeccccchHHHhhhhhhh
Confidence 222211 1112233467788888888888888888888899999999999999998776544 445679999
Q ss_pred ccccCceEEEEcCcEEEEEEeecCCCCCCccccCCCccCCcccCCCCCCCCCCCCCCCCCCCCCCchhHHHHHhhhhhhh
Q 017264 229 KIIPAKCRYEVLSTKVEIRLAKAEPIQWSSLEFSKGAVVPQRVNPPSVSGSPRPTYPSSKPTRVDWDKLEAQVKKEEKEE 308 (374)
Q Consensus 229 ~I~p~~s~~~v~~~kiei~L~K~~~~~W~~L~~~~~~~~~~~~~~~~~~~~~~~~~p~s~~~~~dWdk~~~e~~~~~~~e 308 (374)
+|+|+.+++++.+.++||+|+|.+.++|..|++............ .+ ....+-|+|+++++||+++..+.+.| +|
T Consensus 233 ev~P~~~s~k~fsK~~e~~l~KV~~v~W~~l~~~pa~~S~~l~~e--~~-N~~SAt~~s~~k~~Dw~~l~~~~~~d--Ee 307 (368)
T COG5091 233 EVYPDIRSIKSFSKRVEVHLRKVEMVRWGGLNGRPADESSRLSDE--GK-NSDSATPKSSKKQDDWKELMVEDSGD--EE 307 (368)
T ss_pred hcCcchhhhhhcchhheehhhhhhhhhhcccccCccccccccccc--cc-cccccCCccccccccHHHhhhhhccc--cc
Confidence 999999999999999999999999999999997632210000000 00 11234477788899999998753221 11
Q ss_pred cccchHHHHHHHHHHhcCCCHHHHHHhhhhhhhcCCeeeecccccccCceeecCCCCCcccccc
Q 017264 309 KLDGDAALNKFFQEIYADADEDTRRAMKKSFVESNGTVLSTNWKEVGSKKVEGSPPDGMEMKKW 372 (374)
Q Consensus 309 ~~~~~~~~~~~f~~iY~~~d~d~kram~Ks~~eS~gt~lstnw~~v~~~~~~~~~p~g~~~k~~ 372 (374)
+| ..+++|||+||++|||||||||||||+|||||+|||||++|++|+|+++||+|||.|+|
T Consensus 308 --~p-s~~dslFqklY~~addDtrRAMmKSf~ESnGTaLSTdW~dVkskt~~t~pPeGMEPK~~ 368 (368)
T COG5091 308 --NP-SVMDSLFQKLYQRADDDTRRAMMKSFYESNGTALSTDWDDVKSKTITTEPPEGMEPKHW 368 (368)
T ss_pred --Cc-hHHHHHHHHHHhcCCchHHHHHHHHHhhcCCceecccHHHhhcCceecCCCCCCCCCCC
Confidence 22 23788999999999999999999999999999999999999999999999999999999
No 4
>PF05002 SGS: SGS domain ; InterPro: IPR007699 This domain was thought to be unique to the SGT1-like proteins, but is also found in calcyclin binding proteins. Sgt1p is a highly conserved eukaryotic protein that is required for both SCF (Skp1p/Cdc53p-Cullin-F-box)-mediated ubiquitination and kinetochore function in yeast and also plays a role in the cAMP pathway. Calcyclin (S100A6) is a member of the S100A family of calcium binding proteins and appears to play a role in cell proliferation [].; PDB: 1X5M_A 2JTT_D.
Probab=100.00 E-value=2e-43 Score=262.43 Aligned_cols=81 Identities=58% Similarity=0.998 Sum_probs=31.9
Q ss_pred CCchhHHHHHhhhhhhhcccchHHHHHHHHHHhcCCCHHHHHHhhhhhhhcCCeeeecccccccCceeecCCCCCccccc
Q 017264 292 VDWDKLEAQVKKEEKEEKLDGDAALNKFFQEIYADADEDTRRAMKKSFVESNGTVLSTNWKEVGSKKVEGSPPDGMEMKK 371 (374)
Q Consensus 292 ~dWdk~~~e~~~~~~~e~~~~~~~~~~~f~~iY~~~d~d~kram~Ks~~eS~gt~lstnw~~v~~~~~~~~~p~g~~~k~ 371 (374)
+||++|......+.++++.+++++||+|||+||++|||||||||||||+|||||||||||+|||+++|+++||+|||+|+
T Consensus 2 ~~W~~l~~~~~~~~~~d~~d~~a~lm~lfkkiY~~gDDe~KRam~KSf~ES~GT~LSTnW~eV~~~~~~~~pp~g~e~k~ 81 (82)
T PF05002_consen 2 KNWDKLTKKKEKEEEDDEEDPEASLMNLFKKIYDNGDDEMKRAMMKSFTESQGTVLSTNWDEVGKKKVEPSPPDGMEWKK 81 (82)
T ss_dssp ---SSSBHH--------------SHHHHHHHHHTTS-SCHHHHHHHHHHCT-----------------------------
T ss_pred CChHHccccccccccccccCchHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCcccccchhccchhhhcccccccccccc
Confidence 59999986644445555567778899999999999999999999999999999999999999999999999999999999
Q ss_pred c
Q 017264 372 W 372 (374)
Q Consensus 372 ~ 372 (374)
|
T Consensus 82 ~ 82 (82)
T PF05002_consen 82 W 82 (82)
T ss_dssp -
T ss_pred C
Confidence 9
No 5
>KOG3260 consensus Calcyclin-binding protein CacyBP [Signal transduction mechanisms]
Probab=99.96 E-value=7.9e-29 Score=206.45 Aligned_cols=138 Identities=22% Similarity=0.327 Sum_probs=119.6
Q ss_pred CccccccCCeEEEEEEeCCCCCCceEEEEeeeEEEEEEEcCCCCeeeecc-ccccccccCceEEEEcCcEEEEEEeecCC
Q 017264 175 RHEFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQP-RLFGKIIPAKCRYEVLSTKVEIRLAKAEP 253 (374)
Q Consensus 175 r~~W~Qt~~~V~i~i~~k~~~~~~v~v~~~~~~l~v~~~~~~~~~y~~~~-~L~~~I~p~~s~~~v~~~kiei~L~K~~~ 253 (374)
.|+|.|++++|.++|.+.||+.++|+|+|+++||.+.++...|++|.+.+ +|+++|.|+.|+.+|.+..|.|.|+|.+.
T Consensus 76 ~ygWDQs~kfVK~yItL~GV~eenVqv~ftp~Sldl~v~dlqGK~y~~~vnnLlk~I~vEks~~kvKtd~v~I~~kkVe~ 155 (224)
T KOG3260|consen 76 LYGWDQSNKFVKMYITLEGVDEENVQVEFTPMSLDLKVHDLQGKNYRMIVNNLLKPISVEKSSKKVKTDTVLILCKKVEN 155 (224)
T ss_pred hcCccccCCeeEEEEEeecccccceeEEecccceeeeeeecCCcceeeehhhhccccChhhcccccccceEEEeehhhhc
Confidence 39999999999999999999999999999999999999999999999999 89999999999999999999999999999
Q ss_pred CCCCccccCCCccCCcccCCCCCCCCCCCCCCCCCCCCCCchhHHHHHhhhhhhhcccchHHHHHHHHHHhcCCCHHHHH
Q 017264 254 IQWSSLEFSKGAVVPQRVNPPSVSGSPRPTYPSSKPTRVDWDKLEAQVKKEEKEEKLDGDAALNKFFQEIYADADEDTRR 333 (374)
Q Consensus 254 ~~W~~L~~~~~~~~~~~~~~~~~~~~~~~~~p~s~~~~~dWdk~~~e~~~~~~~e~~~~~~~~~~~f~~iY~~~d~d~kr 333 (374)
.+|.-|+.-... ..++..|+|- -+.+++++||++|++||.|||+||||
T Consensus 156 ~rwd~Lt~~~Ke----------~Kek~kpsl~----------------------ke~DP~~glmnvmKk~YeDGD~~mK~ 203 (224)
T KOG3260|consen 156 TRWDYLTQVEKE----------CKEKEKPSLD----------------------KETDPSEGLMNVMKKIYEDGDDDMKQ 203 (224)
T ss_pred ccchHHHHHHHH----------HhhccCcccc----------------------ccCChHHHHHHHHHHHHhcccHHHHH
Confidence 999999853221 1112334431 11235678999999999999999999
Q ss_pred HhhhhhhhcCC
Q 017264 334 AMKKSFVESNG 344 (374)
Q Consensus 334 am~Ks~~eS~g 344 (374)
+|+|+|+||..
T Consensus 204 tIaKAWtesr~ 214 (224)
T KOG3260|consen 204 TIAKAWTESRE 214 (224)
T ss_pred HHHHHHHHhhh
Confidence 99999999964
No 6
>cd06488 p23_melusin_like p23_like domain similar to the C-terminal (tail) domain of vertebrate Melusin and related proteins. Melusin's tail domain interacts with the cytoplasmic domain of beta1-A and beta1-D isoforms of beta1 integrin, it does not bind other integrin beta subunits. Melusin is a muscle-specific protein expressed in skeletal and cardiac muscles but not in smooth muscle or other tissues. It is needed for heart hypertrophy following mechanical overload. The integrin-binding portion of this domain appears to be sequestered in the full length melusin protein, Ca2+ may modulate the protein's conformation exposing this binding site. This group includes Chordc1, also known as Chp-1, which is conserved from vertebrates to humans. Mammalian Chordc1 interacts with the heat shock protein (HSP) Hsp90 and is implicated in circadian and/or homeostatic mechanisms in the brain. The N-terminal portions of proteins belonging to this group contain two cysteine and histidine rich domain (C
Probab=99.90 E-value=1e-23 Score=162.89 Aligned_cols=87 Identities=36% Similarity=0.566 Sum_probs=82.9
Q ss_pred cCccccccCCeEEEEEEeCCCCCCceEEEEeeeEEEEEEEcCCCCeeeeccccccccccCceEEEEcCcEEEEEEeecCC
Q 017264 174 YRHEFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVLSTKVEIRLAKAEP 253 (374)
Q Consensus 174 ~r~~W~Qt~~~V~i~i~~k~~~~~~v~v~~~~~~l~v~~~~~~~~~y~~~~~L~~~I~p~~s~~~v~~~kiei~L~K~~~ 253 (374)
.|||||||+++|+|+||+||++++++.|+|++++|+|.+..++|+.|.+.++||++|+|+.|++++.++||||+|+|+++
T Consensus 1 ~R~dW~Qs~~~V~ItI~~k~~~~~~~~v~~~~~~l~v~~~~~~~~~y~~~l~L~~~I~~~~s~~~v~~~kvei~L~K~~~ 80 (87)
T cd06488 1 CRHDWHQTGSHVVVSVYAKNSNPELSVVEANSTVLTIHIVFEGNKEFQLDIELWGVIDVEKSSVNMLPTKVEIKLRKAEP 80 (87)
T ss_pred CCccEeeCCCEEEEEEEECcCCccceEEEecCCEEEEEEECCCCceEEEEeeccceEChhHcEEEecCcEEEEEEEeCCC
Confidence 48999999999999999999999999999999999998877778889999999999999999999999999999999998
Q ss_pred CCCCccc
Q 017264 254 IQWSSLE 260 (374)
Q Consensus 254 ~~W~~L~ 260 (374)
.+|++|+
T Consensus 81 ~~W~~Le 87 (87)
T cd06488 81 GSWAKLE 87 (87)
T ss_pred CcCccCC
Confidence 9999996
No 7
>cd06489 p23_CS_hSgt1_like p23_like domain similar to the C-terminal CS (CHORD-SGT1) domain of human (h) Sgt1 and related proteins. hSgt1 is a co-chaperone which has been shown to be elevated in HEp-2 cells as a result of stress conditions such as heat shock. It interacts with the heat shock proteins (HSPs) Hsp70 and Hsp90, and it expression pattern is synchronized with these two Hsps. The interaction with HSP90 has been shown to involve the hSgt1_CS domain, and appears to be required for correct kinetochore assembly and efficient cell division. Some proteins in this subgroup contain a tetratricopeptide repeat (TPR) HSP-binding domain N-terminal to this CS domain, and most proteins in this subgroup contain a Sgt1-specific (SGS) domain C-terminal to the CS domain. The SGS domain interacts with some S100 family proteins. Studies suggest that S100A6 modulates in a Ca2+ dependent manner the interactions of hSgt1 with Hsp90 and Hsp70. The yeast Sgt1 CS domain is not found in this subgroup.
Probab=99.87 E-value=5.6e-22 Score=152.40 Aligned_cols=84 Identities=37% Similarity=0.757 Sum_probs=80.6
Q ss_pred cccccCCeEEEEEEeCCCCCCceEEEEeeeEEEEEEEcCCCCeeeeccccccccccCceEEEEcCcEEEEEEeecCCCCC
Q 017264 177 EFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVLSTKVEIRLAKAEPIQW 256 (374)
Q Consensus 177 ~W~Qt~~~V~i~i~~k~~~~~~v~v~~~~~~l~v~~~~~~~~~y~~~~~L~~~I~p~~s~~~v~~~kiei~L~K~~~~~W 256 (374)
||||++++|+|+|+++|+.++++.|+|++++|+|.+...+|..|.++++||++|+|++|++++++++|||+|+|+++..|
T Consensus 1 dW~Q~~~~V~iti~~k~~~~~~~~v~~~~~~l~~~~~~~~~~~y~~~~~L~~~I~p~~s~~~v~~~kiei~L~K~~~~~W 80 (84)
T cd06489 1 DWYQTESQVVITILIKNVKPEDVSVEFEKRELSATVKLPSGNDYSLKLHLLHPIVPEQSSYKILSTKIEIKLKKTEAIRW 80 (84)
T ss_pred CccccCCEEEEEEEECCCCHHHCEEEEeCCEEEEEEECCCCCcEEEeeecCceecchhcEEEEeCcEEEEEEEcCCCCCC
Confidence 79999999999999999999999999999999999987777789999999999999999999999999999999998999
Q ss_pred Cccc
Q 017264 257 SSLE 260 (374)
Q Consensus 257 ~~L~ 260 (374)
++|+
T Consensus 81 ~~Le 84 (84)
T cd06489 81 SKLE 84 (84)
T ss_pred ccCC
Confidence 9996
No 8
>cd00237 p23 p23 binds heat shock protein (Hsp)90 and participates in the folding of a number of Hsp90 clients, including the progesterone receptor. p23 also has a passive chaperoning activity and in addition may participate in prostaglandin synthesis.
Probab=99.86 E-value=1.7e-21 Score=155.17 Aligned_cols=102 Identities=20% Similarity=0.357 Sum_probs=89.7
Q ss_pred CccccccCCeEEEEEEeCCCCCCceEEEEeeeEEEEEEEcCCCCeeeeccccccccccCceEEEEcCcEEEEEEeecCC-
Q 017264 175 RHEFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVLSTKVEIRLAKAEP- 253 (374)
Q Consensus 175 r~~W~Qt~~~V~i~i~~k~~~~~~v~v~~~~~~l~v~~~~~~~~~y~~~~~L~~~I~p~~s~~~v~~~kiei~L~K~~~- 253 (374)
.+.|||+.+.|+|+|++++ .++++|+|++++|+|+....+|..|.++++||++|+|++|++++++++|+|+|+|++.
T Consensus 3 ~v~WaQr~~~V~ltI~v~d--~~d~~v~l~~~~l~f~~~~~~g~~y~~~l~l~~~I~pe~Sk~~v~~r~ve~~L~K~~~~ 80 (106)
T cd00237 3 KTLWYDRRDYVFIEFCVED--SKDVKVDFEKSKLTFSCLNGDNVKIYNEIELYDRVDPNDSKHKRTDRSILCCLRKGKEG 80 (106)
T ss_pred cceeeECCCEEEEEEEeCC--CCCcEEEEecCEEEEEEECCCCcEEEEEEEeecccCcccCeEEeCCceEEEEEEeCCCC
Confidence 4799999999999999997 5899999999999999866577789999999999999999999999999999999975
Q ss_pred CCCCccccCCCccCCcccCCCCCCCCCCCCCCCCCCCCCCchhHHH
Q 017264 254 IQWSSLEFSKGAVVPQRVNPPSVSGSPRPTYPSSKPTRVDWDKLEA 299 (374)
Q Consensus 254 ~~W~~L~~~~~~~~~~~~~~~~~~~~~~~~~p~s~~~~~dWdk~~~ 299 (374)
..|++|+++. .++.|. ++|||+|.+
T Consensus 81 ~~WprL~k~~----------------~k~~~l-----k~DfdkW~D 105 (106)
T cd00237 81 VAWPRLTKEK----------------AKPNWL-----SVDFDNWRD 105 (106)
T ss_pred CCCchhhcCC----------------CCCCcE-----ECcchhccC
Confidence 5899999863 234554 679999984
No 9
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.84 E-value=1.6e-20 Score=171.13 Aligned_cols=120 Identities=31% Similarity=0.515 Sum_probs=116.4
Q ss_pred ChHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 017264 1 MATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATAC 80 (374)
Q Consensus 1 ma~~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~ 80 (374)
+|+.++.+|+.+++.++|++|+..|++||.++|.++.+|++||.+|.+||+|+.|+.+|+.||.++|.+.++|.|||.+|
T Consensus 80 ~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~ 159 (304)
T KOG0553|consen 80 LAESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAY 159 (304)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHH
Confidence 36789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhh
Q 017264 81 MKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE 120 (374)
Q Consensus 81 ~~lg~~~eA~~~~~~a~~l~p~~~~~~~~~~~~~~~l~~~ 120 (374)
+.+|+|.+|++.|+++++++|++..++..+..++.++...
T Consensus 160 ~~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~ 199 (304)
T KOG0553|consen 160 LALGKYEEAIEAYKKALELDPDNESYKSNLKIAEQKLNEP 199 (304)
T ss_pred HccCcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcCC
Confidence 9999999999999999999999999999999998888775
No 10
>cd06465 p23_hB-ind1_like p23_like domain found in human (h) butyrate-induced transcript 1 (B-ind1) and similar proteins. hB-ind1 participates in signaling by the small GTPase Rac1. It binds to Rac1 and enhances different Rac1 effects including activation of nuclear factor (NF) kappaB and activation of c-Jun N-terminal kinase (JNK). hB-ind1 also plays a part in the RNA replication and particle production of Hepatitis C virus (HCV) through its interaction with heat shock protein Hsp90, HCV nonstructural protein 5A (NS5A), and the immunophilin FKBP8. hB-ind1 is upregulated in the outer layer of Chinese hamster V79 cells grown as multicell spheroids, versus in the same cells grown as monolayers. This group includes the Saccharomyces cerevisiae Sba1, a co-chaperone of the Hsp90. Sba1 has been shown to be is required for telomere length maintenance, and may modulate telomerase DNA-binding activity.
Probab=99.83 E-value=1.5e-20 Score=151.50 Aligned_cols=86 Identities=22% Similarity=0.351 Sum_probs=79.9
Q ss_pred CccccccCCeEEEEEEeCCCCCCceEEEEeeeEEEEEEEcC-CCCeeeeccccccccccCceEEEEcCcEEEEEEeecC-
Q 017264 175 RHEFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVP-GEEAYHFQPRLFGKIIPAKCRYEVLSTKVEIRLAKAE- 252 (374)
Q Consensus 175 r~~W~Qt~~~V~i~i~~k~~~~~~v~v~~~~~~l~v~~~~~-~~~~y~~~~~L~~~I~p~~s~~~v~~~kiei~L~K~~- 252 (374)
-|+||||.+.|+|+|+++++ +++.|+|++++|+|.+... +++.|.+.++||++|+|++|+|++.+++|+|+|+|++
T Consensus 2 ~~~W~Qt~~~V~i~i~~~~~--~~~~V~~~~~~l~v~~~~~~~~~~y~~~~~L~~~I~pe~s~~~v~~~kveI~L~K~~~ 79 (108)
T cd06465 2 PVLWAQRSDVVYLTIELPDA--KDPKIKLEPTSLSFKAKGGGGGKKYEFDLEFYKEIDPEESKYKVTGRQIEFVLRKKEA 79 (108)
T ss_pred ceeeeECCCEEEEEEEeCCC--CCcEEEEECCEEEEEEEcCCCCeeEEEEeEhhhhccccccEEEecCCeEEEEEEECCC
Confidence 48999999999999999997 8999999999999998654 5677999999999999999999999999999999999
Q ss_pred CCCCCccccC
Q 017264 253 PIQWSSLEFS 262 (374)
Q Consensus 253 ~~~W~~L~~~ 262 (374)
+..|++|+..
T Consensus 80 ~~~W~~L~~~ 89 (108)
T cd06465 80 GEYWPRLTKE 89 (108)
T ss_pred CCCCcccccC
Confidence 7899999975
No 11
>cd06468 p23_CacyBP p23_like domain found in proteins similar to Calcyclin-Binding Protein(CacyBP)/Siah-1-interacting protein (SIP). CacyBP/SIP interacts with S100A6 (calcyclin), with some other members of the S100 family, with tubulin, and with Siah-1 and Skp-1. The latter two are components of the ubiquitin ligase that regulates beta-catenin degradation. The beta-catenin gene is an oncogene participating in tumorigenesis in many different cancers. Overexpression of CacyBP/SIP, in part through its effect on the expression of beta-catenin, inhibits the proliferation, tumorigenicity, and invasion of gastric cancer cells. CacyBP/SIP is abundant in neurons and neuroblastoma NB2a cells. An extensive re-organization of microtubules accompanies the differentiation of NB2a cells. CacyBP/SIP may contribute to NB2a cell differentiation through binding to and increasing the oligomerization of tubulin. CacyBP/SIP is also implicated in differentiation of erythroid cells, rat neonatal cardiomyocytes
Probab=99.81 E-value=1.6e-19 Score=141.23 Aligned_cols=86 Identities=27% Similarity=0.466 Sum_probs=80.3
Q ss_pred CccccccCCeEEEEEEeCCCCC---CceEEEEeeeEEEEEEEcCCCCeeeeccc-cccccccCceEEEEcCcEEEEEEee
Q 017264 175 RHEFYQKPEEVVVTVFAKGIPA---KNVTVDFGEQILSVSIDVPGEEAYHFQPR-LFGKIIPAKCRYEVLSTKVEIRLAK 250 (374)
Q Consensus 175 r~~W~Qt~~~V~i~i~~k~~~~---~~v~v~~~~~~l~v~~~~~~~~~y~~~~~-L~~~I~p~~s~~~v~~~kiei~L~K 250 (374)
+|+||||.+.|+|+|+++++.. +++.|+|++++|+|.+...+|.+|.+.+. ||++|+|++|+|++.+++|+|+|+|
T Consensus 3 ~y~W~Qt~~~V~i~i~~~~~~~~~~~~v~v~~~~~~l~v~~~~~~~~~~~~~~~~L~~~I~~e~s~~~~~~~ki~i~L~K 82 (92)
T cd06468 3 KYAWDQSDKFVKIYITLKGVHQLPKENIQVEFTERSFELKVHDLNGKNYRFTINRLLKKIDPEKSSFKVKTDRIVITLAK 82 (92)
T ss_pred eeeeecCCCEEEEEEEccCCCcCCcccEEEEecCCEEEEEEECCCCcEEEEEehHhhCccCccccEEEEeCCEEEEEEEe
Confidence 6999999999999999999876 99999999999999997767788998884 9999999999999999999999999
Q ss_pred cCCCCCCccc
Q 017264 251 AEPIQWSSLE 260 (374)
Q Consensus 251 ~~~~~W~~L~ 260 (374)
+++..|++|+
T Consensus 83 ~~~~~W~~L~ 92 (92)
T cd06468 83 KKEKKWESLT 92 (92)
T ss_pred CCCCccCccC
Confidence 9989999984
No 12
>cd06466 p23_CS_SGT1_like p23_like domain similar to the C-terminal CHORD-SGT1 (CS) domain of Sgt1 (suppressor of G2 allele of Skp1). Sgt1 interacts with multiple protein complexes and has the features of a cochaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. ScSgt1 is needed for the G1/S and G2/M cell-cycle transitions, and for assembly of the core kinetochore complex (CBF3) via activation of Ctf13, the F-box protein. Binding of Hsp82 (a yeast Hsp90 homologue) to ScSgt1, promotes the binding of Sgt1 to Skp1 and of Skp1 to Ctf13. Some proteins in this group have an SGT1-specific (SGS) domain at the extreme C-terminus. The ScSgt1-SGS domain binds adenylate cyclase. The hSgt1-SGS domain interacts with some S100 family proteins, and studies sug
Probab=99.81 E-value=1.8e-19 Score=138.46 Aligned_cols=84 Identities=49% Similarity=0.782 Sum_probs=79.3
Q ss_pred cccccCCeEEEEEEeCCCCCCceEEEEeeeEEEEEEEcCCCCeeeeccccccccccCceEEEEcCcEEEEEEeecCCCCC
Q 017264 177 EFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVLSTKVEIRLAKAEPIQW 256 (374)
Q Consensus 177 ~W~Qt~~~V~i~i~~k~~~~~~v~v~~~~~~l~v~~~~~~~~~y~~~~~L~~~I~p~~s~~~v~~~kiei~L~K~~~~~W 256 (374)
||||+++.|+|+|+++|+.++++.|+|++++|+|.+...++..|.+.++||++|+|++|++++.+++|+|+|+|+++..|
T Consensus 1 dW~Qt~~~v~i~v~~~~~~~~~v~v~~~~~~l~i~~~~~~~~~~~~~~~L~~~I~~~~s~~~~~~~~vei~L~K~~~~~W 80 (84)
T cd06466 1 DWYQTDTSVTVTIYAKNVDKEDVKVEFNEQSLSVSIILPGGSEYQLELDLFGPIDPEQSKVSVLPTKVEITLKKAEPGSW 80 (84)
T ss_pred CccccCCEEEEEEEECCCCHHHCEEEEecCEEEEEEECCCCCeEEEecccccccCchhcEEEEeCeEEEEEEEcCCCCCC
Confidence 79999999999999999999999999999999999876656689999999999999999999999999999999998999
Q ss_pred Cccc
Q 017264 257 SSLE 260 (374)
Q Consensus 257 ~~L~ 260 (374)
++|+
T Consensus 81 ~~L~ 84 (84)
T cd06466 81 PSLE 84 (84)
T ss_pred ccCC
Confidence 9985
No 13
>cd06490 p23_NCB5OR p23_like domain found in NAD(P)H cytochrome b5 (NCB5) oxidoreductase (OR) and similar proteins. NCB5OR is widely expressed in human organs and tissues and is localized in the ER (endoplasmic reticulum). It appears to play a critical role in maintaining viable pancreatic beta cells. Mice homozygous for a targeted knockout (KO) of the gene encoding NCB5OR develop an early-onset nonautoimmune diabetes phenotype with a non-inflammatory beta-cell deficiency. The role of NCB5OR in beta cells may be in maintaining or regulating their redox status. Proteins in this group in addition contain an N-terminal cytochrome b5 domain and a C-terminal cytochrome b5 oxidoreductase domain. The gene encoding NCB5OR has been considered as a positional candidate for type II diabetes and other diabetes subtypes related to B-cell dysfunction, however variation in its coding region does not appear not to be a major contributor to the pathogenesis of these diseases.
Probab=99.80 E-value=2.9e-19 Score=137.80 Aligned_cols=83 Identities=29% Similarity=0.448 Sum_probs=73.2
Q ss_pred ccccccCCeEEEEEEeCC--CCCCceEEEEeeeEEEEEEEcCCCCeeeeccccccccccCceEEEEcCc--EEEEEEeec
Q 017264 176 HEFYQKPEEVVVTVFAKG--IPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVLST--KVEIRLAKA 251 (374)
Q Consensus 176 ~~W~Qt~~~V~i~i~~k~--~~~~~v~v~~~~~~l~v~~~~~~~~~y~~~~~L~~~I~p~~s~~~v~~~--kiei~L~K~ 251 (374)
||||||+++|+|+||+|+ .+..++.+++..++|+|++..+ ++.|.++++|||+|+|+. ++++... ||||+|+|+
T Consensus 1 ~DWyQt~~~Vtitiy~K~~~~~~~~v~v~~~~~~l~v~~~~~-~~~~~~~~~L~~~I~~~~-~~~~~~~~~KVEI~L~K~ 78 (87)
T cd06490 1 YDWFQTDSEVTIVVYTKSKGNPADIVIVDDQQRELRVEIILG-DKSYLLHLDLSNEVQWPC-EVRISTETGKIELVLKKK 78 (87)
T ss_pred CCceECCCEEEEEEEEcccCCCCccEEEECCCCEEEEEEECC-CceEEEeeeccccCCCCc-EEEEcccCceEEEEEEcC
Confidence 899999999999999885 5567788888999999999877 778999999999998765 8888854 999999999
Q ss_pred CCCCCCccc
Q 017264 252 EPIQWSSLE 260 (374)
Q Consensus 252 ~~~~W~~L~ 260 (374)
++.+|++|.
T Consensus 79 e~~~W~~Lg 87 (87)
T cd06490 79 EPEKWTSLG 87 (87)
T ss_pred CCCccccCc
Confidence 999999983
No 14
>KOG3158 consensus HSP90 co-chaperone p23 [Posttranslational modification, protein turnover, chaperones]
Probab=99.71 E-value=8.3e-18 Score=140.60 Aligned_cols=109 Identities=25% Similarity=0.337 Sum_probs=93.3
Q ss_pred ccccccCCeEEEEEEeCCCCCCceEEEEeeeEEEEEEEc-CCCCeeeeccccccccccCceEEEEcCcEEEEEEeecCC-
Q 017264 176 HEFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDV-PGEEAYHFQPRLFGKIIPAKCRYEVLSTKVEIRLAKAEP- 253 (374)
Q Consensus 176 ~~W~Qt~~~V~i~i~~k~~~~~~v~v~~~~~~l~v~~~~-~~~~~y~~~~~L~~~I~p~~s~~~v~~~kiei~L~K~~~- 253 (374)
.-|+|+.+.|+|+|.+. ...++.|.+++..|.|+..+ .++..|.++|+||++|+|++|+++++++.|.++|+|++.
T Consensus 10 v~Waqr~~~vyltv~Ve--d~~d~~v~~e~~~l~fs~k~~~d~~~~~~~ief~~eIdpe~sk~k~~~r~if~i~~K~e~~ 87 (180)
T KOG3158|consen 10 VKWAQRRDLVYLTVCVE--DAKDVHVNLEPSKLTFSCKSGADNHKYENEIEFFDEIDPEKSKHKRTSRSIFCILRKKELG 87 (180)
T ss_pred chhhhhcCeEEEEEEec--cCccceeeccccEEEEEeccCCCceeeEEeeehhhhcCHhhccccccceEEEEEEEccccc
Confidence 47999999999999998 56889999999989988776 566678888999999999999999999999999999987
Q ss_pred CCCCccccCCCccCCcccCCCCCCCCCCCCCCCCCCCCCCchhHHHHHhhhhhh
Q 017264 254 IQWSSLEFSKGAVVPQRVNPPSVSGSPRPTYPSSKPTRVDWDKLEAQVKKEEKE 307 (374)
Q Consensus 254 ~~W~~L~~~~~~~~~~~~~~~~~~~~~~~~~p~s~~~~~dWdk~~~e~~~~~~~ 307 (374)
.+|++|++. +.++.|. +.|||||++|.++++.+
T Consensus 88 ~~WprLtke----------------K~K~hwL-----kvDFdkW~Dededde~~ 120 (180)
T KOG3158|consen 88 EYWPRLTKE----------------KAKLHWL-----KVDFDKWVDEDEDDEAE 120 (180)
T ss_pred cccchhhhc----------------ccccceE-----Ecchhhccccccccchh
Confidence 899999986 4457776 56999999875444443
No 15
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.69 E-value=2.2e-16 Score=153.35 Aligned_cols=116 Identities=33% Similarity=0.537 Sum_probs=112.8
Q ss_pred hHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 017264 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACM 81 (374)
Q Consensus 2 a~~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~ 81 (374)
+...+..|+.+|+.|+|..|+.+|++||..+|+++.+|.+||.||.+++++..|+.|++.+++++|++..+|+|.|.+++
T Consensus 358 A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~ 437 (539)
T KOG0548|consen 358 AEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALR 437 (539)
T ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHH
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Q 017264 82 KLEEYETAKVALEKGASLAPGDSRFTNLIKECEERI 117 (374)
Q Consensus 82 ~lg~~~eA~~~~~~a~~l~p~~~~~~~~~~~~~~~l 117 (374)
.+.+|+.|+.+|+.+++++|++.++..++.+|...+
T Consensus 438 ~mk~ydkAleay~eale~dp~~~e~~~~~~rc~~a~ 473 (539)
T KOG0548|consen 438 AMKEYDKALEAYQEALELDPSNAEAIDGYRRCVEAQ 473 (539)
T ss_pred HHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999998876
No 16
>PF04969 CS: CS domain; InterPro: IPR017447 The function of the CS domain is unknown. The CS domain is sometimes found C-terminal to the CHORD domain (IPR007051 from INTERPRO) in metazoan proteins, but occurs separately from the CHORD domain in plants. This association is thought to be indicative of an functional interaction between CS and CHORD domains [].; PDB: 1WGV_A 2KMW_A 2O30_B 1WH0_A 1EJF_A 2RH0_B 1RL1_A 2CR0_A 1WFI_A 2XCM_D ....
Probab=99.69 E-value=1.4e-16 Score=120.50 Aligned_cols=76 Identities=38% Similarity=0.602 Sum_probs=69.7
Q ss_pred CccccccCCeEEEEEEeCCCC--CCceEEEEeeeEEEEEEEcCCCCeeeeccccccccccCceEEEEcCcEEEEEEee
Q 017264 175 RHEFYQKPEEVVVTVFAKGIP--AKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVLSTKVEIRLAK 250 (374)
Q Consensus 175 r~~W~Qt~~~V~i~i~~k~~~--~~~v~v~~~~~~l~v~~~~~~~~~y~~~~~L~~~I~p~~s~~~v~~~kiei~L~K 250 (374)
||+|+||.+.|+|+|++++.. ++++.|+|++++|+|.+...++..|.++++||++|+|++|+|++.+++|+|+|+|
T Consensus 2 ~y~W~Qt~~~V~v~i~~~~~~~~~~dv~v~~~~~~l~v~~~~~~~~~~~~~~~L~~~I~~~~s~~~~~~~~i~i~L~K 79 (79)
T PF04969_consen 2 RYDWYQTDDEVTVTIPVKPVDISKEDVKVDFTDTSLSVSIKSGDGKEYLLEGELFGEIDPDESTWKVKDNKIEITLKK 79 (79)
T ss_dssp SEEEEEESSEEEEEEE-TTTTSSGGGEEEEEETTEEEEEEEETTSCEEEEEEEBSS-BECCCEEEEEETTEEEEEEEB
T ss_pred CeEEEECCCEEEEEEEEcCCCCChHHeEEEEEeeEEEEEEEccCCceEEEEEEEeeeEcchhcEEEEECCEEEEEEEC
Confidence 799999999999999997765 8999999999999999987777899999999999999999999999999999998
No 17
>cd06469 p23_DYX1C1_like p23_like domain found in proteins similar to dyslexia susceptibility 1 (DYX1) candidate 1 (C1) protein, DYX1C1. The human gene encoding this protein is a positional candidate gene for developmental dyslexia (DD), it is located on 15q21.3 by the DYX1 DD susceptibility locus (15q15-21). Independent association studies have reported conflicting results. However, association of short-term memory, which plays a role in DD, with a variant within the DYX1C1 gene has been reported. Most proteins belonging to this group contain a C-terminal tetratricopeptide repeat (TPR) protein binding region.
Probab=99.68 E-value=1.6e-16 Score=120.25 Aligned_cols=78 Identities=26% Similarity=0.346 Sum_probs=73.2
Q ss_pred ccccCCeEEEEEEeCCCCCCceEEEEeeeEEEEEEEcCCCCeeeeccccccccccCceEEEEcCcEEEEEEeecCCCCCC
Q 017264 178 FYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVLSTKVEIRLAKAEPIQWS 257 (374)
Q Consensus 178 W~Qt~~~V~i~i~~k~~~~~~v~v~~~~~~l~v~~~~~~~~~y~~~~~L~~~I~p~~s~~~v~~~kiei~L~K~~~~~W~ 257 (374)
|+|+++.|+|+|+++|+.++++.|+++++.|.|++ ..|.+.++||++|+|++|++++.+++|+|+|.|+++..|+
T Consensus 1 W~Qt~~~v~i~i~~p~v~~~~v~v~~~~~~l~i~~-----~~~~~~~~l~~~I~~e~~~~~~~~~~l~i~L~K~~~~~W~ 75 (78)
T cd06469 1 WSQTDEDVKISVPLKGVKTSKVDIFCSDLYLKVNF-----PPYLFELDLAAPIDDEKSSAKIGNGVLVFTLVKKEPGIWE 75 (78)
T ss_pred CcccCCEEEEEEEeCCCccccceEEEecCEEEEcC-----CCEEEEEeCcccccccccEEEEeCCEEEEEEEeCCCCccc
Confidence 99999999999999999999999999998887765 3699999999999999999999999999999999888999
Q ss_pred ccc
Q 017264 258 SLE 260 (374)
Q Consensus 258 ~L~ 260 (374)
+|+
T Consensus 76 ~L~ 78 (78)
T cd06469 76 ALC 78 (78)
T ss_pred ccC
Confidence 986
No 18
>cd06493 p23_NUDCD1_like p23_NUDCD1: p23-like NUD (nuclear distribution) C-like domain found in human NUD (nuclear distribution) C domain-containing protein 1, NUDCD1 (also known as CML66), and similar proteins. NUDCD1/CML66 is a broadly immunogenic tumor associated antigen, which is highly expressed in a variety of solid tumors and in leukemias. In normal tissues high expression of NUDCD1/CML66 is limited to testis and heart.
Probab=99.67 E-value=2.5e-16 Score=121.15 Aligned_cols=81 Identities=16% Similarity=0.341 Sum_probs=71.7
Q ss_pred ccccccCCeEEEEEEe-CCCCCCceEEEEeeeEEEEEEEcCCCCeeeeccccccccccCceEEEEcCc-EEEEEEeecCC
Q 017264 176 HEFYQKPEEVVVTVFA-KGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVLST-KVEIRLAKAEP 253 (374)
Q Consensus 176 ~~W~Qt~~~V~i~i~~-k~~~~~~v~v~~~~~~l~v~~~~~~~~~y~~~~~L~~~I~p~~s~~~v~~~-kiei~L~K~~~ 253 (374)
|+|+||.+.|+|+|++ +++.++++.|+|++++|.|.+. ++ ...+.++||+.|+|++|+|++... +|+|+|.|+++
T Consensus 1 Y~W~Qt~~~V~v~i~~p~~~~~~dv~v~~~~~~l~v~~~--~~-~~~~~g~L~~~I~~d~Stw~i~~~~~l~i~L~K~~~ 77 (85)
T cd06493 1 YYWQQTEEDLTLTIRLPEDTTKEDIRIKFLPDHISIALK--DQ-APLLEGKLYSSIDHESSTWIIKENKSLEVSLIKKDE 77 (85)
T ss_pred CccEEeCCEEEEEEECCCCCChhhEEEEEecCEEEEEeC--CC-CeEEeCcccCcccccCcEEEEeCCCEEEEEEEECCC
Confidence 8999999999999999 5899999999999999999874 23 344788999999999999999765 69999999986
Q ss_pred -CCCCcc
Q 017264 254 -IQWSSL 259 (374)
Q Consensus 254 -~~W~~L 259 (374)
..|++|
T Consensus 78 ~~~W~~L 84 (85)
T cd06493 78 GPTWPEL 84 (85)
T ss_pred Ccccccc
Confidence 599988
No 19
>cd06463 p23_like Proteins containing this p23_like domain include p23 and its Saccharomyces cerevisiae (Sc) homolog Sba1. Both are co-chaperones for the heat shock protein (Hsp) 90. p23 binds Hsp90 and participates in the folding of a number of Hsp90 clients, including the progesterone receptor. p23 also has a passive chaperoning activity and in addition may participate in prostaglandin synthesis. Both p23 and Sba1p can regulate telomerase activity. This group includes domains similar to the C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1). Sgt1 interacts with multiple protein complexes and has the features of a co-chaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. This group also includes the p23_like domains of
Probab=99.67 E-value=3.9e-16 Score=119.20 Aligned_cols=83 Identities=37% Similarity=0.636 Sum_probs=78.0
Q ss_pred ccccCCeEEEEEEeCCCCCCceEEEEeeeEEEEEEEcCCCCeeeeccccccccccCceEEEEcCcEEEEEEeecCC-CCC
Q 017264 178 FYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVLSTKVEIRLAKAEP-IQW 256 (374)
Q Consensus 178 W~Qt~~~V~i~i~~k~~~~~~v~v~~~~~~l~v~~~~~~~~~y~~~~~L~~~I~p~~s~~~v~~~kiei~L~K~~~-~~W 256 (374)
|+|+++.|+|+|+++++.++++.|+|++++|+|.+...++..|.++++|+++|+|++|++++.+++|+|+|.|+.+ ..|
T Consensus 1 W~Q~~~~v~i~v~~~~~~~~~~~v~~~~~~l~i~~~~~~~~~~~~~~~L~~~I~~~~s~~~~~~~~l~i~L~K~~~~~~W 80 (84)
T cd06463 1 WYQTLDEVTITIPLKDVTKKDVKVEFTPKSLTVSVKGGGGKEYLLEGELFGPIDPEESKWTVEDRKIEITLKKKEPGEWW 80 (84)
T ss_pred CcccccEEEEEEEcCCCCccceEEEEecCEEEEEeeCCCCCceEEeeEccCccchhhcEEEEeCCEEEEEEEECCCCCCC
Confidence 9999999999999999999999999999999999876556789999999999999999999999999999999998 899
Q ss_pred Cccc
Q 017264 257 SSLE 260 (374)
Q Consensus 257 ~~L~ 260 (374)
++|+
T Consensus 81 ~~l~ 84 (84)
T cd06463 81 PRLE 84 (84)
T ss_pred cccC
Confidence 9985
No 20
>cd06467 p23_NUDC_like p23_like domain of NUD (nuclear distribution) C and similar proteins. Aspergillus nidulas (An) NUDC is needed for nuclear movement. AnNUDC is localized at the hyphal cortex, and binds NUDF at spindle pole bodies (SPBs) and in the cytoplasm at different stages in the cell cycle. At the SPBs it is part of the dynein molecular motor/NUDF complex that regulates microtubule dynamics. Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its ext
Probab=99.66 E-value=4.7e-16 Score=119.64 Aligned_cols=81 Identities=25% Similarity=0.352 Sum_probs=74.0
Q ss_pred ccccccCCeEEEEEEe-CCCCCCceEEEEeeeEEEEEEEcCCCCeeeeccccccccccCceEEEEcC-cEEEEEEeecCC
Q 017264 176 HEFYQKPEEVVVTVFA-KGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVLS-TKVEIRLAKAEP 253 (374)
Q Consensus 176 ~~W~Qt~~~V~i~i~~-k~~~~~~v~v~~~~~~l~v~~~~~~~~~y~~~~~L~~~I~p~~s~~~v~~-~kiei~L~K~~~ 253 (374)
|.|+||.+.|+|+|.+ +++.++++.|+|++++|+|++.. ..+.+...||++|+|++|+|++.+ ++|+|+|+|+++
T Consensus 1 y~W~Qt~~~V~i~i~~~~~~~~~dv~v~~~~~~l~v~~~~---~~~~l~~~L~~~I~~~~s~w~~~~~~~v~i~L~K~~~ 77 (85)
T cd06467 1 YSWTQTLDEVTVTIPLPEGTKSKDVKVEITPKHLKVGVKG---GEPLLDGELYAKVKVDESTWTLEDGKLLEITLEKRNE 77 (85)
T ss_pred CEEEeeCCEEEEEEECCCCCcceeEEEEEEcCEEEEEECC---CCceEcCcccCceeEcCCEEEEeCCCEEEEEEEECCC
Confidence 7999999999999987 56788999999999999999852 357788899999999999999999 999999999997
Q ss_pred -CCCCcc
Q 017264 254 -IQWSSL 259 (374)
Q Consensus 254 -~~W~~L 259 (374)
..|++|
T Consensus 78 ~~~W~~L 84 (85)
T cd06467 78 GEWWPSL 84 (85)
T ss_pred Ccccccc
Confidence 799987
No 21
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=99.64 E-value=8.6e-17 Score=155.02 Aligned_cols=318 Identities=23% Similarity=0.193 Sum_probs=209.0
Q ss_pred ChHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 017264 1 MATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATAC 80 (374)
Q Consensus 1 ma~~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~ 80 (374)
||..+.++|+.++..+.|+.|+.+|.+||+++|+++.++.+||.+|++.++|..|+.|+.+|++++|...++|+|+|.++
T Consensus 3 ~a~e~k~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~ 82 (476)
T KOG0376|consen 3 SAEELKNEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAV 82 (476)
T ss_pred hhhhhhhHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHH
Confidence 57788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhh--cccCCCCCCCCCCccccCCCCCCCCCCCCCccccccc
Q 017264 81 MKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEET--GELQKQPLETGPTNVVSTNNVQPATNISSTEDVETVM 158 (374)
Q Consensus 81 ~~lg~~~eA~~~~~~a~~l~p~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 158 (374)
..++++.+|+..|+....+.|+++.+.+.+..|+....... .+.+.+......+. .+ .. ...
T Consensus 83 m~l~~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~~vs~~~fe~ai~~~~~d~~s~~--~~-~~-~~~------------ 146 (476)
T KOG0376|consen 83 MALGEFKKALLDLEKVKKLAPNDPDATRKIDECNKIVSEEKFEKAILTPEGDKKSVV--EM-KI-DEE------------ 146 (476)
T ss_pred HhHHHHHHHHHHHHHhhhcCcCcHHHHHHHHHHHHHHHHHhhhhcccCCccCCcccc--cc-cc-ccc------------
Confidence 99999999999999999999999999999999999887752 22221111111110 00 00 000
Q ss_pred cccccccccCCCCCCcCccccccCCeEEEEEEeCCCCCCceEEEEeeeEEEEEEEcCCCCeeeeccccccccccCceE-E
Q 017264 159 DVSNEAAMAAPARPKYRHEFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCR-Y 237 (374)
Q Consensus 159 ~~~~~ap~~~~~~~~~r~~W~Qt~~~V~i~i~~k~~~~~~v~v~~~~~~l~v~~~~~~~~~y~~~~~L~~~I~p~~s~-~ 237 (374)
... + ........+++-- .++.+.|+..+ . .+. . .+.+.-.++..|+...+. +
T Consensus 147 ~~~---~-i~~~y~g~~le~~-------------kvt~e~vk~~~-----~-~~~--~--~~~L~~k~a~~i~~~~~~~~ 199 (476)
T KOG0376|consen 147 DMD---L-IESDYSGPVLEDH-------------KVTLEFVKTLM-----E-VFK--N--QKKLPKKYAYSILDLAKTIL 199 (476)
T ss_pred ccc---c-cccccCCcccccc-------------hhhHHHHHHHH-----H-hhh--c--ccccccccceeeHHHHhhHH
Confidence 000 0 0000111111111 11222221111 0 011 1 123334455556565554 3
Q ss_pred EEcCcEEEEEEeecCC-CCCCccccCCCcc-CC-cccCCCCCCCCCCCCCCCCCCCCCCchhHHHHHhhhhhhhcccchH
Q 017264 238 EVLSTKVEIRLAKAEP-IQWSSLEFSKGAV-VP-QRVNPPSVSGSPRPTYPSSKPTRVDWDKLEAQVKKEEKEEKLDGDA 314 (374)
Q Consensus 238 ~v~~~kiei~L~K~~~-~~W~~L~~~~~~~-~~-~~~~~~~~~~~~~~~~p~s~~~~~dWdk~~~e~~~~~~~e~~~~~~ 314 (374)
.+.+..|+|. ..+ ..|.-.....+.. .. ...... ........|. ...||..+.....+-.......+..
T Consensus 200 ~~l~~~ve~~---~~~d~~~sv~gd~hGqfydl~nif~l~-g~Ps~t~~yl----fngdfv~rgs~s~e~~~~~~~~kl~ 271 (476)
T KOG0376|consen 200 RKLPSLVEIS---VPGDVKISVCGDTHGQFYDLLNIFELN-GLPSETNPYL----FNGDFVDRGSWSVEVILTLFAFKLL 271 (476)
T ss_pred hcCCcceEee---cCCCceEEecCCccccccchhhhHhhc-CCCCCccccc----ccCceeeecccceeeeeeehhhccc
Confidence 4455677777 334 3444333222111 00 000000 0001112222 1236665544322223334456667
Q ss_pred HHHHHHHHHhcCCCHHHHHHhhhhhhhcCCeeeecccccccCceeecCCCCCcccccc
Q 017264 315 ALNKFFQEIYADADEDTRRAMKKSFVESNGTVLSTNWKEVGSKKVEGSPPDGMEMKKW 372 (374)
Q Consensus 315 ~~~~~f~~iY~~~d~d~kram~Ks~~eS~gt~lstnw~~v~~~~~~~~~p~g~~~k~~ 372 (374)
..|+||--.+.-.+++|.+.|-..+-.+.+++..++|..+ .+..-+|.++.-..|
T Consensus 272 ~pn~~fl~rgn~Es~~m~~iy~f~~e~~~kyte~~~~~f~---~~f~~LPl~~~i~~~ 326 (476)
T KOG0376|consen 272 YPNNFFLLRGNHESDNMNKIYGFEGEVKAKYTEEMFNLFS---EVFIWLPLAHLINNK 326 (476)
T ss_pred CCcceeeccCCccchHHHHHhCCCcchhhhhHHHHHHhhh---hhhccccchhhhcCc
Confidence 7899999999999999999999999999999999999998 677889999887776
No 22
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.64 E-value=1.2e-14 Score=123.28 Aligned_cols=117 Identities=13% Similarity=0.143 Sum_probs=110.7
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Q 017264 4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKL 83 (374)
Q Consensus 4 ~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~l 83 (374)
.+...|..++..|+|++|+..|.+++..+|.+..+++.+|.++..+|++++|+..|.+++.++|+++.+++++|.++..+
T Consensus 26 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~ 105 (144)
T PRK15359 26 TVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMM 105 (144)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHc
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhh
Q 017264 84 EEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE 120 (374)
Q Consensus 84 g~~~eA~~~~~~a~~l~p~~~~~~~~~~~~~~~l~~~ 120 (374)
|++++|+.+|++++.+.|++.......+.++..+...
T Consensus 106 g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~l~~~ 142 (144)
T PRK15359 106 GEPGLAREAFQTAIKMSYADASWSEIRQNAQIMVDTL 142 (144)
T ss_pred CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999888888887776543
No 23
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.59 E-value=8.1e-15 Score=142.55 Aligned_cols=114 Identities=30% Similarity=0.496 Sum_probs=111.7
Q ss_pred ChHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 017264 1 MATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATAC 80 (374)
Q Consensus 1 ma~~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~ 80 (374)
|+..+..+||.+|..|+|+.|+.+|+.||.++|.|..+|.+|+.||..+|+|++|+.+..+.++++|.++++|.|+|.++
T Consensus 1 ~a~e~k~kgnaa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~ 80 (539)
T KOG0548|consen 1 KAVELKEKGNAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAAL 80 (539)
T ss_pred ChhHHHHHHHhhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHH
Confidence 67889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCHHHHHHHHHHHHhcCCCChhHHHHHHHHH
Q 017264 81 MKLEEYETAKVALEKGASLAPGDSRFTNLIKECE 114 (374)
Q Consensus 81 ~~lg~~~eA~~~~~~a~~l~p~~~~~~~~~~~~~ 114 (374)
+.+|+|++|+..|.++++.+|+|..+...+..+.
T Consensus 81 ~~lg~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~ 114 (539)
T KOG0548|consen 81 FGLGDYEEAILAYSEGLEKDPSNKQLKTGLAQAY 114 (539)
T ss_pred HhcccHHHHHHHHHHHhhcCCchHHHHHhHHHhh
Confidence 9999999999999999999999999999998887
No 24
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.59 E-value=2.8e-14 Score=135.45 Aligned_cols=119 Identities=24% Similarity=0.406 Sum_probs=110.2
Q ss_pred hHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Q 017264 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNS---------------AELFADRAQASIKLQNFTEAVADANRAIELE 66 (374)
Q Consensus 2 a~~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~---------------~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~ 66 (374)
|......|+.+|+.|+|..|+..|.+|+..-.+. ..++.|+|.||+++++|.+|+..|+++|.++
T Consensus 208 A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~ 287 (397)
T KOG0543|consen 208 ADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD 287 (397)
T ss_pred HHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC
Confidence 4566889999999999999999999999874322 4689999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhh
Q 017264 67 PSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE 120 (374)
Q Consensus 67 p~~~~a~~~lg~~~~~lg~~~eA~~~~~~a~~l~p~~~~~~~~~~~~~~~l~~~ 120 (374)
|++.+++||+|.+|..+++|+.|+..|+++++++|+|..+...+.+|..++...
T Consensus 288 ~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~ 341 (397)
T KOG0543|consen 288 PNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREY 341 (397)
T ss_pred CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999887776
No 25
>cd06494 p23_NUDCD2_like p23-like NUD (nuclear distribution) C-like found in human NUDC domain-containing protein 2 (NUDCD2) and similar proteins. Little is known about the function of the proteins in this subgroup.
Probab=99.56 E-value=1.7e-14 Score=112.17 Aligned_cols=81 Identities=26% Similarity=0.516 Sum_probs=72.5
Q ss_pred CccccccCCeEEEEE-EeCCCCCCceEEEEeeeEEEEEEEcCCCCeeeeccccccccccCceEEEEcCcE-EEEEEeecC
Q 017264 175 RHEFYQKPEEVVVTV-FAKGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVLSTK-VEIRLAKAE 252 (374)
Q Consensus 175 r~~W~Qt~~~V~i~i-~~k~~~~~~v~v~~~~~~l~v~~~~~~~~~y~~~~~L~~~I~p~~s~~~v~~~k-iei~L~K~~ 252 (374)
+|.|+||.+.|+|+| +.+|+..+++.|.|++++|+|.+. |.. .++.+||+.|+|++|+|++.+.+ |+|.|.|.+
T Consensus 7 ~y~W~QT~~eV~v~i~lp~~~~~kdv~V~i~~~~l~V~~~---g~~-~l~G~L~~~I~~destWtled~k~l~I~L~K~~ 82 (93)
T cd06494 7 WGCWYQTMDEVFIEVNVPPGTRAKDVKCKLGSRDISLAVK---GQE-VLKGKLFDSVVADECTWTLEDRKLIRIVLTKSN 82 (93)
T ss_pred CcEEEeEcCEEEEEEECCCCCceeeEEEEEEcCEEEEEEC---CEE-EEcCcccCccCcccCEEEEECCcEEEEEEEeCC
Confidence 799999999999999 557899999999999999999984 444 67789999999999999999998 699999986
Q ss_pred CC---CCCcc
Q 017264 253 PI---QWSSL 259 (374)
Q Consensus 253 ~~---~W~~L 259 (374)
.. .|++|
T Consensus 83 ~~~~~~W~sl 92 (93)
T cd06494 83 RDAGNCWKSL 92 (93)
T ss_pred CCCCcccccc
Confidence 54 89987
No 26
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.55 E-value=1.9e-13 Score=115.37 Aligned_cols=118 Identities=16% Similarity=0.124 Sum_probs=109.2
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 017264 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK 82 (374)
Q Consensus 3 ~~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~ 82 (374)
+.+...|..++..|+|++|...|.-++.++|.+...++++|.|+..+|+|.+|+..|.+|+.++|+++.+++++|+|++.
T Consensus 36 ~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~ 115 (157)
T PRK15363 36 NTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLA 115 (157)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHH
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhh
Q 017264 83 LEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE 120 (374)
Q Consensus 83 lg~~~eA~~~~~~a~~l~p~~~~~~~~~~~~~~~l~~~ 120 (374)
+|+...|..+|+.++.+..+++.......+++..|...
T Consensus 116 lG~~~~A~~aF~~Ai~~~~~~~~~~~l~~~A~~~L~~l 153 (157)
T PRK15363 116 CDNVCYAIKALKAVVRICGEVSEHQILRQRAEKMLQQL 153 (157)
T ss_pred cCCHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHh
Confidence 99999999999999999877777777777777666554
No 27
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.54 E-value=8.4e-14 Score=120.24 Aligned_cols=118 Identities=34% Similarity=0.482 Sum_probs=108.7
Q ss_pred hHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 017264 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNS-----AELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRK 76 (374)
Q Consensus 2 a~~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~-----~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~l 76 (374)
+..+...||.+|.+|+|.+|..-|..||...|.. ..+|.+||.|+++++.++.|+.+|.+||+|+|.+.+++.|+
T Consensus 95 ad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RR 174 (271)
T KOG4234|consen 95 ADSLKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERR 174 (271)
T ss_pred HHHHHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHH
Confidence 4568889999999999999999999999999987 46899999999999999999999999999999999999999
Q ss_pred HHHHHHhcCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHh
Q 017264 77 ATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAE 119 (374)
Q Consensus 77 g~~~~~lg~~~eA~~~~~~a~~l~p~~~~~~~~~~~~~~~l~~ 119 (374)
|.+|.++..|++|+..|.+.++++|....+...+.++..++..
T Consensus 175 Aeayek~ek~eealeDyKki~E~dPs~~ear~~i~rl~~~i~e 217 (271)
T KOG4234|consen 175 AEAYEKMEKYEEALEDYKKILESDPSRREAREAIARLPPKINE 217 (271)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhCcchHHHHHHHHhcCHHHHH
Confidence 9999999999999999999999999998888777776555444
No 28
>KOG1667 consensus Zn2+-binding protein Melusin/RAR1, contains CHORD domain [General function prediction only]
Probab=99.53 E-value=2.6e-14 Score=126.01 Aligned_cols=91 Identities=33% Similarity=0.492 Sum_probs=83.8
Q ss_pred CCcCccccccCCeEEEEEEeCCCCCCceEEEEeeeEEEEEEEc-CCCCeeeeccccccccccCceEEEEcCcEEEEEEee
Q 017264 172 PKYRHEFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDV-PGEEAYHFQPRLFGKIIPAKCRYEVLSTKVEIRLAK 250 (374)
Q Consensus 172 ~~~r~~W~Qt~~~V~i~i~~k~~~~~~v~v~~~~~~l~v~~~~-~~~~~y~~~~~L~~~I~p~~s~~~v~~~kiei~L~K 250 (374)
.+.||||.||+..|+|+||.++..++.-.|+..+..|.|+|.. .++..|.++++|++.|++++|++.+..+||||.|+|
T Consensus 213 ~~cR~Dwhqt~~~Vti~VY~k~~lpe~s~iean~~~l~V~ivf~~gna~fd~d~kLwgvvnve~s~v~m~~tkVEIsl~k 292 (320)
T KOG1667|consen 213 VKCRHDWHQTNGFVTINVYAKGALPETSNIEANGTTLHVSIVFGFGNASFDLDYKLWGVVNVEESSVVMGETKVEISLKK 292 (320)
T ss_pred ccchhhhhhcCCeEEEEEEeccCCcccceeeeCCeEEEEEEEecCCCceeeccceeeeeechhhceEEeecceEEEEEec
Confidence 4679999999999999999999988888999999999999876 456678899999999999999999999999999999
Q ss_pred cCCCCCCccccC
Q 017264 251 AEPIQWSSLEFS 262 (374)
Q Consensus 251 ~~~~~W~~L~~~ 262 (374)
++++.|.+|+..
T Consensus 293 ~ep~sWa~Le~p 304 (320)
T KOG1667|consen 293 AEPGSWARLEFP 304 (320)
T ss_pred cCCCCcccccCC
Confidence 999999999975
No 29
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.51 E-value=8.5e-13 Score=109.89 Aligned_cols=116 Identities=18% Similarity=0.301 Sum_probs=109.8
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 017264 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK 82 (374)
Q Consensus 3 ~~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~ 82 (374)
..++..|..++..|+|++|+..|.+++..+|.++.++..+|.+|..+|++.+|+..+.+++.++|.+...++.+|.++..
T Consensus 18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~ 97 (135)
T TIGR02552 18 EQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLA 97 (135)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHH
Q 017264 83 LEEYETAKVALEKGASLAPGDSRFTNLIKECEERIA 118 (374)
Q Consensus 83 lg~~~eA~~~~~~a~~l~p~~~~~~~~~~~~~~~l~ 118 (374)
+|++++|+..|+++++++|++..+..+..++...+.
T Consensus 98 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~ 133 (135)
T TIGR02552 98 LGEPESALKALDLAIEICGENPEYSELKERAEAMLE 133 (135)
T ss_pred cCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHh
Confidence 999999999999999999999998888888876654
No 30
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=99.45 E-value=3e-13 Score=125.26 Aligned_cols=117 Identities=26% Similarity=0.340 Sum_probs=109.6
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 017264 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK 82 (374)
Q Consensus 3 ~~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~ 82 (374)
.++..+||.||++|.|++||.+|++++..+|+|+.++.+||.+|+++++|..|..||..|+.|+....++|-|+|.+-+.
T Consensus 98 SEiKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~ 177 (536)
T KOG4648|consen 98 SEIKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARES 177 (536)
T ss_pred HHHHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 35688999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHh
Q 017264 83 LEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAE 119 (374)
Q Consensus 83 lg~~~eA~~~~~~a~~l~p~~~~~~~~~~~~~~~l~~ 119 (374)
+|...+|...|+.+++|.|.+.++...++.+...+..
T Consensus 178 Lg~~~EAKkD~E~vL~LEP~~~ELkK~~a~i~Sl~E~ 214 (536)
T KOG4648|consen 178 LGNNMEAKKDCETVLALEPKNIELKKSLARINSLRER 214 (536)
T ss_pred HhhHHHHHHhHHHHHhhCcccHHHHHHHHHhcchHhh
Confidence 9999999999999999999999888887776654433
No 31
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.42 E-value=5.7e-12 Score=119.56 Aligned_cols=108 Identities=21% Similarity=0.149 Sum_probs=102.2
Q ss_pred hHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 017264 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACM 81 (374)
Q Consensus 2 a~~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~ 81 (374)
++.++.+|..+...|++..|+..|++++.++|+++.+|+.+|.+|..+|++++|+..|+++++++|++..+++++|.+++
T Consensus 64 a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~ 143 (296)
T PRK11189 64 AQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALY 143 (296)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 45688999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCHHHHHHHHHHHHhcCCCChhHHHH
Q 017264 82 KLEEYETAKVALEKGASLAPGDSRFTNL 109 (374)
Q Consensus 82 ~lg~~~eA~~~~~~a~~l~p~~~~~~~~ 109 (374)
..|++++|+.+|+++++++|+++....|
T Consensus 144 ~~g~~~eA~~~~~~al~~~P~~~~~~~~ 171 (296)
T PRK11189 144 YGGRYELAQDDLLAFYQDDPNDPYRALW 171 (296)
T ss_pred HCCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 9999999999999999999999753333
No 32
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.41 E-value=2.2e-12 Score=124.31 Aligned_cols=118 Identities=24% Similarity=0.398 Sum_probs=100.8
Q ss_pred hHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 017264 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACM 81 (374)
Q Consensus 2 a~~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~ 81 (374)
|.++..+||-+|.+|+|++||++|++||.++|+.+.+|.+|+.||..+|++++.++++.+|++++|+..++++|++.++.
T Consensus 115 A~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A~E 194 (606)
T KOG0547|consen 115 AAALKTKGNKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASAHE 194 (606)
T ss_pred HHHHHhhhhhhhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHHHH
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCHHHHHHHHHHHHhcC-CCChhHHHHHHHHHHHHHh
Q 017264 82 KLEEYETAKVALEKGASLA-PGDSRFTNLIKECEERIAE 119 (374)
Q Consensus 82 ~lg~~~eA~~~~~~a~~l~-p~~~~~~~~~~~~~~~l~~ 119 (374)
.+|++++|+....-..-+. =+|..+...+.++..++..
T Consensus 195 ~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~ 233 (606)
T KOG0547|consen 195 QLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAM 233 (606)
T ss_pred hhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHH
Confidence 9999999998887433222 2334444445555444433
No 33
>cd06492 p23_mNUDC_like p23-like NUD (nuclear distribution) C-like domain of mammalian(m) NUDC and similar proteins. Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its extracellular domain, and promoting cell proliferation and differentiation.
Probab=99.39 E-value=2.4e-12 Score=99.09 Aligned_cols=82 Identities=22% Similarity=0.280 Sum_probs=72.1
Q ss_pred ccccccCCeEEEEEEeCC---CCCCceEEEEeeeEEEEEEEcCCCCeeeeccccccccccCceEEEEcCc-EEEEEEeec
Q 017264 176 HEFYQKPEEVVVTVFAKG---IPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVLST-KVEIRLAKA 251 (374)
Q Consensus 176 ~~W~Qt~~~V~i~i~~k~---~~~~~v~v~~~~~~l~v~~~~~~~~~y~~~~~L~~~I~p~~s~~~v~~~-kiei~L~K~ 251 (374)
|.|.||.+.|+|+|.++. +...++.|+|+.++|+|.++ |..+.++.+||++|++++|+|.+.+. .|+|+|.|.
T Consensus 1 Y~W~QT~~ev~v~v~l~~~~~~~~kdv~v~i~~~~l~v~~~---g~~~~i~G~L~~~V~~des~Wtled~~~l~i~L~K~ 77 (87)
T cd06492 1 YRWTQTLSEVELKVPFKVSFRLKGKDVVVDIQRKHLKVGLK---GQPPIIDGELYNEVKVEESSWLIEDGKVVTVNLEKI 77 (87)
T ss_pred CccEeecCEEEEEEECCCCCCccceEEEEEEecCEEEEEEC---CCceEEeCcccCcccccccEEEEeCCCEEEEEEEEC
Confidence 789999999999998742 67899999999999999885 44567899999999999999999874 699999999
Q ss_pred CC-CCCCccc
Q 017264 252 EP-IQWSSLE 260 (374)
Q Consensus 252 ~~-~~W~~L~ 260 (374)
.+ ..|++|.
T Consensus 78 ~~~~wW~~l~ 87 (87)
T cd06492 78 NKMEWWSRLV 87 (87)
T ss_pred CCCccccccC
Confidence 76 6999873
No 34
>cd06495 p23_NUDCD3_like p23-like NUD (nuclear distribution) C-like domain found in human NUDC domain-containing protein 3 (NUDCD3) and similar proteins. Little is known about the function of the proteins in this subgroup.
Probab=99.38 E-value=3.1e-12 Score=100.93 Aligned_cols=88 Identities=19% Similarity=0.251 Sum_probs=75.5
Q ss_pred CccccccCCeEEEEEEeC-CC-CCCceEEEEeeeEEEEEEEcCCCCeeeeccccccccccCceEEEEcCc-EEEEEEeec
Q 017264 175 RHEFYQKPEEVVVTVFAK-GI-PAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVLST-KVEIRLAKA 251 (374)
Q Consensus 175 r~~W~Qt~~~V~i~i~~k-~~-~~~~v~v~~~~~~l~v~~~~~~~~~y~~~~~L~~~I~p~~s~~~v~~~-kiei~L~K~ 251 (374)
+|.|.||.+.|+|+|.++ ++ ..+++.|+|+.++|.|.+...++..-.++.+||+.|+++.|+|.+.+. .|.|+|.|.
T Consensus 6 ~Y~WtQTl~eV~V~i~lp~~~~~~kdv~v~i~~~~l~v~~~~~~~~~~~i~G~L~~~V~~des~Wtled~~~l~I~L~K~ 85 (102)
T cd06495 6 NYTWSQDYTDVEVRVPVPKDVVKGRQVSVDLQSSSIRVSVRDGGGEKVLMEGEFTHKINTENSLWSLEPGKCVLLSLSKC 85 (102)
T ss_pred ceEEEeECCeEEEEEECCCCCccceEEEEEEEcCEEEEEEecCCCCceEEeCcccCcccCccceEEEeCCCEEEEEEEEC
Confidence 799999999999999886 43 579999999999999999744343345888999999999999999985 589999999
Q ss_pred CCCCCCccccC
Q 017264 252 EPIQWSSLEFS 262 (374)
Q Consensus 252 ~~~~W~~L~~~ 262 (374)
....|++|-..
T Consensus 86 ~~~wW~~v~~g 96 (102)
T cd06495 86 SEVWWNAVLKG 96 (102)
T ss_pred CCcccchhhCC
Confidence 77789999753
No 35
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.37 E-value=3.1e-12 Score=121.17 Aligned_cols=116 Identities=28% Similarity=0.512 Sum_probs=108.0
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 017264 4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNS----AELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATA 79 (374)
Q Consensus 4 ~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~----~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~ 79 (374)
.....||.+|++|+|..|.+.|+.||.++|++ +.+|.+||.++.++|+..+|+.+++.|+.|++...++++++|.|
T Consensus 251 ~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c 330 (486)
T KOG0550|consen 251 VKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANC 330 (486)
T ss_pred HHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHH
Confidence 45789999999999999999999999999988 57899999999999999999999999999999999999999999
Q ss_pred HHHhcCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhh
Q 017264 80 CMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE 120 (374)
Q Consensus 80 ~~~lg~~~eA~~~~~~a~~l~p~~~~~~~~~~~~~~~l~~~ 120 (374)
+..+++|++|++.|+++.++..+ ..+++.+.+++..|++.
T Consensus 331 ~l~le~~e~AV~d~~~a~q~~~s-~e~r~~l~~A~~aLkkS 370 (486)
T KOG0550|consen 331 HLALEKWEEAVEDYEKAMQLEKD-CEIRRTLREAQLALKKS 370 (486)
T ss_pred HHHHHHHHHHHHHHHHHHhhccc-cchHHHHHHHHHHHHHh
Confidence 99999999999999999999887 77778888877777754
No 36
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.36 E-value=2.7e-11 Score=108.14 Aligned_cols=108 Identities=18% Similarity=0.170 Sum_probs=98.5
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-HHccC--HHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 017264 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQAS-IKLQN--FTEAVADANRAIELEPSMSKAYWRKATA 79 (374)
Q Consensus 3 ~~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~-~~l~~--~~~Al~~~~~al~l~p~~~~a~~~lg~~ 79 (374)
+.+...|..+...|+|+.|+..|.+++.++|+++.++..+|.++ ...|+ +.+|++.++++++++|++..+++.+|.+
T Consensus 74 ~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~ 153 (198)
T PRK10370 74 EQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASD 153 (198)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHH
Confidence 45788999999999999999999999999999999999999985 67777 5999999999999999999999999999
Q ss_pred HHHhcCHHHHHHHHHHHHhcCCCChhHHHHH
Q 017264 80 CMKLEEYETAKVALEKGASLAPGDSRFTNLI 110 (374)
Q Consensus 80 ~~~lg~~~eA~~~~~~a~~l~p~~~~~~~~~ 110 (374)
++.+|+|++|+.+|++++++.|.+..-...+
T Consensus 154 ~~~~g~~~~Ai~~~~~aL~l~~~~~~r~~~i 184 (198)
T PRK10370 154 AFMQADYAQAIELWQKVLDLNSPRVNRTQLV 184 (198)
T ss_pred HHHcCCHHHHHHHHHHHHhhCCCCccHHHHH
Confidence 9999999999999999999998776544444
No 37
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=99.32 E-value=5.8e-11 Score=95.91 Aligned_cols=107 Identities=15% Similarity=0.109 Sum_probs=98.4
Q ss_pred hHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---HHHHHH
Q 017264 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNS---AELFADRAQASIKLQNFTEAVADANRAIELEPSM---SKAYWR 75 (374)
Q Consensus 2 a~~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~---~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~---~~a~~~ 75 (374)
++.++..|..++..|+|++|+..|.+++...|.+ ..+++.+|.++.+.|++++|+..++.++...|++ +.+++.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 81 (119)
T TIGR02795 2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLK 81 (119)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence 4678999999999999999999999999998876 5789999999999999999999999999998874 678999
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHhcCCCChhHHH
Q 017264 76 KATACMKLEEYETAKVALEKGASLAPGDSRFTN 108 (374)
Q Consensus 76 lg~~~~~lg~~~eA~~~~~~a~~l~p~~~~~~~ 108 (374)
+|.++..+|++++|+.+|.+++...|++.....
T Consensus 82 ~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 114 (119)
T TIGR02795 82 LGMSLQELGDKEKAKATLQQVIKRYPGSSAAKL 114 (119)
T ss_pred HHHHHHHhCChHHHHHHHHHHHHHCcCChhHHH
Confidence 999999999999999999999999999876443
No 38
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.29 E-value=8.8e-12 Score=123.13 Aligned_cols=118 Identities=19% Similarity=0.173 Sum_probs=97.9
Q ss_pred hHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 017264 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACM 81 (374)
Q Consensus 2 a~~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~ 81 (374)
++++++.|+.+-..+.|+.|+..|.+|+.+.|+++.++.++|.+|+.+|..+-||..|++||.+.|+++.+|.++|.++-
T Consensus 252 ~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALk 331 (966)
T KOG4626|consen 252 LDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALK 331 (966)
T ss_pred hHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHH
Confidence 46778888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HhcCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHh
Q 017264 82 KLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAE 119 (374)
Q Consensus 82 ~lg~~~eA~~~~~~a~~l~p~~~~~~~~~~~~~~~l~~ 119 (374)
..|+..+|..||.+++.+.|.+.+....++.+..+...
T Consensus 332 d~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~ 369 (966)
T KOG4626|consen 332 DKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGK 369 (966)
T ss_pred hccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcc
Confidence 88888888888888888888888877777776655433
No 39
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.27 E-value=8.3e-11 Score=122.63 Aligned_cols=117 Identities=17% Similarity=0.202 Sum_probs=106.6
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 017264 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK 82 (374)
Q Consensus 3 ~~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~ 82 (374)
..+...|..++..|++++|+..|.++|.++|.+...++.+|.+|..+|++++|+.+|++++.++|+++.+++.+|.+++.
T Consensus 332 ~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~ 411 (615)
T TIGR00990 332 IALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFI 411 (615)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 34677899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHh
Q 017264 83 LEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAE 119 (374)
Q Consensus 83 lg~~~eA~~~~~~a~~l~p~~~~~~~~~~~~~~~l~~ 119 (374)
+|++++|+.+|++++.++|++......++.+...++.
T Consensus 412 ~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~ 448 (615)
T TIGR00990 412 KGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGS 448 (615)
T ss_pred cCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCC
Confidence 9999999999999999999998877777666655444
No 40
>PRK15331 chaperone protein SicA; Provisional
Probab=99.27 E-value=1.3e-10 Score=98.72 Aligned_cols=116 Identities=11% Similarity=0.024 Sum_probs=102.9
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 017264 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK 82 (374)
Q Consensus 3 ~~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~ 82 (374)
+.+...|..+|..|+|++|..+|.-.+..++.++.+++.+|.|+..+++|++|+..|..|..++++++...|..|+|++.
T Consensus 38 e~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~ 117 (165)
T PRK15331 38 DGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLL 117 (165)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHH
Confidence 35678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHh
Q 017264 83 LEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAE 119 (374)
Q Consensus 83 lg~~~eA~~~~~~a~~l~p~~~~~~~~~~~~~~~l~~ 119 (374)
+|+...|+.+|+.++. .|.+..++.........+..
T Consensus 118 l~~~~~A~~~f~~a~~-~~~~~~l~~~A~~~L~~l~~ 153 (165)
T PRK15331 118 MRKAAKARQCFELVNE-RTEDESLRAKALVYLEALKT 153 (165)
T ss_pred hCCHHHHHHHHHHHHh-CcchHHHHHHHHHHHHHHHc
Confidence 9999999999999988 56666555554444444444
No 41
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.26 E-value=1.2e-10 Score=121.44 Aligned_cols=118 Identities=14% Similarity=0.142 Sum_probs=111.2
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 017264 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK 82 (374)
Q Consensus 3 ~~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~ 82 (374)
..++..|..++..|+|++|+..|.++|..+|+++.+++.+|.+|+.+|++++|+.+|++++.++|++..+++.+|.+++.
T Consensus 366 ~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~ 445 (615)
T TIGR00990 366 QSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYK 445 (615)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHH
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhh
Q 017264 83 LEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE 120 (374)
Q Consensus 83 lg~~~eA~~~~~~a~~l~p~~~~~~~~~~~~~~~l~~~ 120 (374)
+|++++|+..|++++.+.|++..+...++.+...++..
T Consensus 446 ~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~ 483 (615)
T TIGR00990 446 EGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKF 483 (615)
T ss_pred CCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCH
Confidence 99999999999999999999999888888877766554
No 42
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.25 E-value=4.2e-11 Score=118.38 Aligned_cols=112 Identities=17% Similarity=0.183 Sum_probs=100.2
Q ss_pred hHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 017264 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACM 81 (374)
Q Consensus 2 a~~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~ 81 (374)
|....+.|..+.++|++++|+.+|.+||++.|..+.+|.++|..|-.+|+..+|+++|.+||.++|.+++++-++|.+|.
T Consensus 388 aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~k 467 (966)
T KOG4626|consen 388 AAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYK 467 (966)
T ss_pred hhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhh
Confidence 45567888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCHHHHHHHHHHHHhcCCCChhHHHHHHHH
Q 017264 82 KLEEYETAKVALEKGASLAPGDSRFTNLIKEC 113 (374)
Q Consensus 82 ~lg~~~eA~~~~~~a~~l~p~~~~~~~~~~~~ 113 (374)
..|+..+|+..|+.++.+.|+.++..-.+.-|
T Consensus 468 DsGni~~AI~sY~~aLklkPDfpdA~cNllh~ 499 (966)
T KOG4626|consen 468 DSGNIPEAIQSYRTALKLKPDFPDAYCNLLHC 499 (966)
T ss_pred ccCCcHHHHHHHHHHHccCCCCchhhhHHHHH
Confidence 99999999999999999999988655444433
No 43
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=99.24 E-value=1.7e-10 Score=87.09 Aligned_cols=99 Identities=32% Similarity=0.493 Sum_probs=94.2
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Q 017264 4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKL 83 (374)
Q Consensus 4 ~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~l 83 (374)
.++..|..++..|++.+|+..+.++++..|.+..++..+|.+|...+++++|+..+..++.+.|.+..+++.+|.++...
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCHHHHHHHHHHHHhcCCC
Q 017264 84 EEYETAKVALEKGASLAPG 102 (374)
Q Consensus 84 g~~~eA~~~~~~a~~l~p~ 102 (374)
|+++.|...|.++++..|.
T Consensus 82 ~~~~~a~~~~~~~~~~~~~ 100 (100)
T cd00189 82 GKYEEALEAYEKALELDPN 100 (100)
T ss_pred HhHHHHHHHHHHHHccCCC
Confidence 9999999999999988763
No 44
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=99.20 E-value=7.2e-11 Score=86.59 Aligned_cols=66 Identities=35% Similarity=0.519 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc-CHHHHHHHHHHHHhcCC
Q 017264 36 AELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLE-EYETAKVALEKGASLAP 101 (374)
Q Consensus 36 ~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~lg-~~~eA~~~~~~a~~l~p 101 (374)
+..+..+|.+++.+|+|++|+.+|.++++++|+++.+|+++|.++..+| ++.+|+.+|+++++++|
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 4445555555555555555555555555555555555555555555555 45555555555555544
No 45
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=99.19 E-value=4.2e-11 Score=106.28 Aligned_cols=99 Identities=29% Similarity=0.485 Sum_probs=95.6
Q ss_pred ChHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 017264 1 MATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATAC 80 (374)
Q Consensus 1 ma~~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~ 80 (374)
|++.+..+|+.+|..+.|..||..|.+||-++|..+.+|.+||.||+++++++.+..++.+|+++.|+...++|.+|.++
T Consensus 9 ~a~qlkE~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~ 88 (284)
T KOG4642|consen 9 SAEQLKEQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWL 88 (284)
T ss_pred HHHHHHhccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHH
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCHHHHHHHHHHHHhc
Q 017264 81 MKLEEYETAKVALEKGASL 99 (374)
Q Consensus 81 ~~lg~~~eA~~~~~~a~~l 99 (374)
.....|.+|+.+++++..+
T Consensus 89 l~s~~~~eaI~~Lqra~sl 107 (284)
T KOG4642|consen 89 LQSKGYDEAIKVLQRAYSL 107 (284)
T ss_pred HhhccccHHHHHHHHHHHH
Confidence 9999999999999999655
No 46
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=99.19 E-value=8.8e-11 Score=86.12 Aligned_cols=66 Identities=30% Similarity=0.502 Sum_probs=63.9
Q ss_pred hHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHhCC
Q 017264 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQ-NFTEAVADANRAIELEP 67 (374)
Q Consensus 2 a~~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~-~~~~Al~~~~~al~l~p 67 (374)
|..+...|..++..|+|++|+..|+++|+.+|+++.+++++|.||.++| ++.+|+.+++++++++|
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 5678999999999999999999999999999999999999999999999 79999999999999998
No 47
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=99.18 E-value=6.7e-10 Score=96.86 Aligned_cols=110 Identities=19% Similarity=0.217 Sum_probs=96.9
Q ss_pred hHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 017264 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNS---AELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKAT 78 (374)
Q Consensus 2 a~~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~---~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~ 78 (374)
+..++..|..++..|+|++|+.+|.+++...++. ..++..+|.+|.++|++++|+..+.+++.+.|.+..++..+|.
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 114 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAV 114 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 4467899999999999999999999999987653 5789999999999999999999999999999999999999999
Q ss_pred HHHHhcC--------------HHHHHHHHHHHHhcCCCCh-hHHHHHH
Q 017264 79 ACMKLEE--------------YETAKVALEKGASLAPGDS-RFTNLIK 111 (374)
Q Consensus 79 ~~~~lg~--------------~~eA~~~~~~a~~l~p~~~-~~~~~~~ 111 (374)
++..+|+ +.+|+.++++++.++|++- .+..|+.
T Consensus 115 ~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~ 162 (172)
T PRK02603 115 IYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNNYIEAQNWLK 162 (172)
T ss_pred HHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchhHHHHHHHHH
Confidence 9999888 6888999999999999874 3444443
No 48
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.16 E-value=2.2e-10 Score=110.77 Aligned_cols=119 Identities=23% Similarity=0.265 Sum_probs=107.6
Q ss_pred ChHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 017264 1 MATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATAC 80 (374)
Q Consensus 1 ma~~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~ 80 (374)
||+.+...|-.+|-.|++-.|-..++.+|.++|.+..+|+.||.+|...++-++...+|.+|..++|.++.+||.+|+++
T Consensus 325 ~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~ 404 (606)
T KOG0547|consen 325 MAEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMR 404 (606)
T ss_pred HHHHHHHhhhhhhhcCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHH
Confidence 68889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHh
Q 017264 81 MKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAE 119 (374)
Q Consensus 81 ~~lg~~~eA~~~~~~a~~l~p~~~~~~~~~~~~~~~l~~ 119 (374)
+-+++|++|+..|++++.++|++.-....+.-+..+..+
T Consensus 405 flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k 443 (606)
T KOG0547|consen 405 FLLQQYEEAIADFQKAISLDPENAYAYIQLCCALYRQHK 443 (606)
T ss_pred HHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHH
Confidence 999999999999999999999987544444444444433
No 49
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=99.16 E-value=2e-10 Score=106.43 Aligned_cols=101 Identities=27% Similarity=0.435 Sum_probs=91.6
Q ss_pred hHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 017264 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNS----AELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77 (374)
Q Consensus 2 a~~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~----~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg 77 (374)
|+.+...||.+|+.++|..|+..|+++|...-.+ +.+|.+||.|.+-+|+|..||.|+.+|+.++|.+.++++|=|
T Consensus 81 Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~A 160 (390)
T KOG0551|consen 81 AENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGA 160 (390)
T ss_pred HHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhh
Confidence 6778999999999999999999999999984333 678999999999999999999999999999999999999999
Q ss_pred HHHHHhcCHHHHHHHHHHHHhcCCC
Q 017264 78 TACMKLEEYETAKVALEKGASLAPG 102 (374)
Q Consensus 78 ~~~~~lg~~~eA~~~~~~a~~l~p~ 102 (374)
.|++.++++++|+.+++.+++.+-.
T Consensus 161 kc~~eLe~~~~a~nw~ee~~~~d~e 185 (390)
T KOG0551|consen 161 KCLLELERFAEAVNWCEEGLQIDDE 185 (390)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhHH
Confidence 9999999988888888877666543
No 50
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.15 E-value=2.7e-10 Score=105.98 Aligned_cols=103 Identities=21% Similarity=0.278 Sum_probs=98.7
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 017264 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK 82 (374)
Q Consensus 3 ~~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~ 82 (374)
+.....|+.++.+|+|..|+.+|..|++.+|++..+++.||.+|+.+|+-..|+.++.++|++.|++..+...+|.++..
T Consensus 39 ekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK 118 (504)
T KOG0624|consen 39 EKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLK 118 (504)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhh
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCHHHHHHHHHHHHhcCCCChh
Q 017264 83 LEEYETAKVALEKGASLAPGDSR 105 (374)
Q Consensus 83 lg~~~eA~~~~~~a~~l~p~~~~ 105 (374)
+|++++|...|...+..+|++..
T Consensus 119 ~Gele~A~~DF~~vl~~~~s~~~ 141 (504)
T KOG0624|consen 119 QGELEQAEADFDQVLQHEPSNGL 141 (504)
T ss_pred cccHHHHHHHHHHHHhcCCCcch
Confidence 99999999999999999996653
No 51
>PRK12370 invasion protein regulator; Provisional
Probab=99.15 E-value=7.6e-10 Score=113.97 Aligned_cols=92 Identities=12% Similarity=0.041 Sum_probs=56.9
Q ss_pred hccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHH
Q 017264 14 IDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVAL 93 (374)
Q Consensus 14 ~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~ 93 (374)
..+++++|+..+.+|+.++|+++.++..+|.++..+|++++|+..|++|++++|+++.+|+.+|.+|..+|++++|+..|
T Consensus 316 ~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~ 395 (553)
T PRK12370 316 KQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTI 395 (553)
T ss_pred cchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 34455666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHhcCCCChh
Q 017264 94 EKGASLAPGDSR 105 (374)
Q Consensus 94 ~~a~~l~p~~~~ 105 (374)
+++++++|.+..
T Consensus 396 ~~Al~l~P~~~~ 407 (553)
T PRK12370 396 NECLKLDPTRAA 407 (553)
T ss_pred HHHHhcCCCChh
Confidence 666666665543
No 52
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.14 E-value=9.8e-10 Score=118.88 Aligned_cols=114 Identities=14% Similarity=0.043 Sum_probs=101.7
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 017264 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK 82 (374)
Q Consensus 3 ~~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~ 82 (374)
..+.+.|..+.+.|++++|+..|.+++.++|+++.++.++|.++..+|++++|+..|.+++.++|+++.+++++|.++..
T Consensus 610 ~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~ 689 (987)
T PRK09782 610 NAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQR 689 (987)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 35678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Q 017264 83 LEEYETAKVALEKGASLAPGDSRFTNLIKECEER 116 (374)
Q Consensus 83 lg~~~eA~~~~~~a~~l~p~~~~~~~~~~~~~~~ 116 (374)
+|++++|+.+|++++.++|++..+...+..+..+
T Consensus 690 lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~ 723 (987)
T PRK09782 690 LDDMAATQHYARLVIDDIDNQALITPLTPEQNQQ 723 (987)
T ss_pred CCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHH
Confidence 9999999999999999999987766555544433
No 53
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=99.14 E-value=1.1e-10 Score=89.24 Aligned_cols=82 Identities=27% Similarity=0.406 Sum_probs=73.3
Q ss_pred hccCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHH
Q 017264 14 IDDYFELAYDLYSQAIEISPN--SAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKV 91 (374)
Q Consensus 14 ~~~~y~~Al~~y~~aL~~~p~--~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~ 91 (374)
..|+|+.|+.+|++++..+|. +..+++.+|.||+++|+|.+|+..+++ +..++.+...++.+|.|++.+|+|++|+.
T Consensus 1 ~~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 1 DQGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp HTT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CCccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 368999999999999999995 466788899999999999999999999 88888888999999999999999999999
Q ss_pred HHHHH
Q 017264 92 ALEKG 96 (374)
Q Consensus 92 ~~~~a 96 (374)
.|+++
T Consensus 80 ~l~~~ 84 (84)
T PF12895_consen 80 ALEKA 84 (84)
T ss_dssp HHHHH
T ss_pred HHhcC
Confidence 99875
No 54
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.14 E-value=7.7e-10 Score=115.51 Aligned_cols=115 Identities=12% Similarity=0.000 Sum_probs=93.7
Q ss_pred hHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 017264 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACM 81 (374)
Q Consensus 2 a~~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~ 81 (374)
++.++..|......|.|++|+.++..++.+.|++..++.++|.++.+++++++|+..+++++..+|+++.+++.+|.++.
T Consensus 86 ~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~ 165 (694)
T PRK15179 86 ELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAKSWD 165 (694)
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHH
Confidence 35677788888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HhcCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Q 017264 82 KLEEYETAKVALEKGASLAPGDSRFTNLIKECEER 116 (374)
Q Consensus 82 ~lg~~~eA~~~~~~a~~l~p~~~~~~~~~~~~~~~ 116 (374)
.+|+|++|+.+|++++..+|++...+..++.+.+.
T Consensus 166 ~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~ 200 (694)
T PRK15179 166 EIGQSEQADACFERLSRQHPEFENGYVGWAQSLTR 200 (694)
T ss_pred HhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 88888888888888888777777666666665554
No 55
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.13 E-value=8.9e-10 Score=97.66 Aligned_cols=115 Identities=17% Similarity=0.042 Sum_probs=101.0
Q ss_pred hHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 017264 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACM 81 (374)
Q Consensus 2 a~~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~ 81 (374)
+......|..++..||+..|...+++||+.+|++..++..||..|.++|+.+.|-+.|++|+.++|++++++-+.|--++
T Consensus 35 a~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC 114 (250)
T COG3063 35 AKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHH
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCHHHHHHHHHHHHhc--CCCChhHHHHHHHHHHH
Q 017264 82 KLEEYETAKVALEKGASL--APGDSRFTNLIKECEER 116 (374)
Q Consensus 82 ~lg~~~eA~~~~~~a~~l--~p~~~~~~~~~~~~~~~ 116 (374)
.+|+|++|...|++++.. .+.......++.-|..+
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~ 151 (250)
T COG3063 115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALK 151 (250)
T ss_pred hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhh
Confidence 999999999999998853 33334455556666554
No 56
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.13 E-value=4.3e-10 Score=95.23 Aligned_cols=97 Identities=21% Similarity=0.208 Sum_probs=89.8
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Q 017264 21 AYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLA 100 (374)
Q Consensus 21 Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~a~~l~ 100 (374)
-..+|+++++++|++ +..+|.++..+|++++|+..|.+++.++|.+..+|+.+|.++..+|++++|+.+|++++.++
T Consensus 12 ~~~~~~~al~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~ 88 (144)
T PRK15359 12 PEDILKQLLSVDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD 88 (144)
T ss_pred HHHHHHHHHHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 346799999999885 56789999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChhHHHHHHHHHHHHHhh
Q 017264 101 PGDSRFTNLIKECEERIAEE 120 (374)
Q Consensus 101 p~~~~~~~~~~~~~~~l~~~ 120 (374)
|++......++.|...+++.
T Consensus 89 p~~~~a~~~lg~~l~~~g~~ 108 (144)
T PRK15359 89 ASHPEPVYQTGVCLKMMGEP 108 (144)
T ss_pred CCCcHHHHHHHHHHHHcCCH
Confidence 99999999999888776665
No 57
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.12 E-value=3.8e-10 Score=112.72 Aligned_cols=118 Identities=19% Similarity=0.272 Sum_probs=113.1
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 017264 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK 82 (374)
Q Consensus 3 ~~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~ 82 (374)
.+++..|..|++.+.|+.|.-+|.+|+.++|.+..+++..|..|.++|+.++|++.+++|+.++|.++...|.+|.+++.
T Consensus 490 nAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~ 569 (638)
T KOG1126|consen 490 NAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFS 569 (638)
T ss_pred HHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHh
Confidence 36788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhh
Q 017264 83 LEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE 120 (374)
Q Consensus 83 lg~~~eA~~~~~~a~~l~p~~~~~~~~~~~~~~~l~~~ 120 (374)
+++|++|+..|++..++.|++..+...++++..++++.
T Consensus 570 ~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~ 607 (638)
T KOG1126|consen 570 LGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNT 607 (638)
T ss_pred hcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccc
Confidence 99999999999999999999999999999999988775
No 58
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.12 E-value=2.3e-09 Score=95.58 Aligned_cols=115 Identities=19% Similarity=0.159 Sum_probs=95.6
Q ss_pred hHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 017264 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACM 81 (374)
Q Consensus 2 a~~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~ 81 (374)
+..+...|..++..|+|++|+..|.+++..+|.+..++..+|.+|..+|++++|+..+.+++.+.|.+..+++.+|.+++
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 110 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLC 110 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Confidence 45677889999999999999999999999999999999999999999999999999999999999999899999999999
Q ss_pred HhcCHHHHHHHHHHHHhcC--CCChhHHHHHHHHHHH
Q 017264 82 KLEEYETAKVALEKGASLA--PGDSRFTNLIKECEER 116 (374)
Q Consensus 82 ~lg~~~eA~~~~~~a~~l~--p~~~~~~~~~~~~~~~ 116 (374)
..|++++|+..|.+++... +........++.+...
T Consensus 111 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 147 (234)
T TIGR02521 111 QQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALK 147 (234)
T ss_pred HcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHH
Confidence 9999999999999988753 2333344444444433
No 59
>PRK12370 invasion protein regulator; Provisional
Probab=99.11 E-value=1.4e-09 Score=111.95 Aligned_cols=118 Identities=15% Similarity=0.037 Sum_probs=107.5
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 017264 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK 82 (374)
Q Consensus 3 ~~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~ 82 (374)
..+...|..+...|++++|+.+|.+|++++|+++.+++.+|.+|..+|++++|+..++++++++|.++.+++.++.+++.
T Consensus 339 ~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~ 418 (553)
T PRK12370 339 QALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITYY 418 (553)
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHh
Confidence 45677899999999999999999999999999999999999999999999999999999999999998888888888999
Q ss_pred hcCHHHHHHHHHHHHhcC-CCChhHHHHHHHHHHHHHhh
Q 017264 83 LEEYETAKVALEKGASLA-PGDSRFTNLIKECEERIAEE 120 (374)
Q Consensus 83 lg~~~eA~~~~~~a~~l~-p~~~~~~~~~~~~~~~l~~~ 120 (374)
+|++++|+.++++++... |+++.....++.+...+++.
T Consensus 419 ~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~ 457 (553)
T PRK12370 419 HTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKH 457 (553)
T ss_pred ccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCH
Confidence 999999999999999775 77888888888887776665
No 60
>cd00298 ACD_sHsps_p23-like This domain family includes the alpha-crystallin domain (ACD) of alpha-crystallin-type small heat shock proteins (sHsps) and a similar domain found in p23-like proteins. sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is this ACD. sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps. p23 is a cochaperone of the Hsp90 chaperoning pathway. It binds Hsp90 and participates in the folding of a number of Hsp90 clients including the progesterone receptor. p23 also has a passive chaperoning activity. p23 in addition may act as the cytosolic prostaglandin E2 synthase. Included in this family is the p23-like C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1) and the p23-like domains of human butyrate-induced transcript 1 (hB-ind
Probab=99.10 E-value=2.5e-10 Score=85.28 Aligned_cols=73 Identities=26% Similarity=0.374 Sum_probs=67.6
Q ss_pred ccccCCeEEEEEEeCCCCCCceEEEEeeeEEEEEEEcC-------CCCeeeeccccccccccCceEEEEcCcEEEEEEee
Q 017264 178 FYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVP-------GEEAYHFQPRLFGKIIPAKCRYEVLSTKVEIRLAK 250 (374)
Q Consensus 178 W~Qt~~~V~i~i~~k~~~~~~v~v~~~~~~l~v~~~~~-------~~~~y~~~~~L~~~I~p~~s~~~v~~~kiei~L~K 250 (374)
|+|+++.|+|+|.++|+.++++.|.+.++.|.|++... .+..|.+.+.|+++|+++.+++.+.+.+|+|.|.|
T Consensus 1 ~~q~~~~v~i~i~~~~~~~~~i~v~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~L~~~i~~~~~~~~~~~~~l~i~l~K 80 (80)
T cd00298 1 WYQTDDEVVVTVDLPGVKKEDIKVEVEDNVLTISGKREEEEERERSYGEFERSFELPEDVDPEKSKASLENGVLEITLPK 80 (80)
T ss_pred CEEcCCEEEEEEECCCCCHHHeEEEEECCEEEEEEEEcCCCcceEeeeeEEEEEECCCCcCHHHCEEEEECCEEEEEEcC
Confidence 99999999999999999999999999999999998654 24579999999999999999999999999999987
No 61
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.09 E-value=1.9e-09 Score=96.30 Aligned_cols=106 Identities=14% Similarity=0.135 Sum_probs=97.8
Q ss_pred ccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-HHhcC--HHHHHH
Q 017264 15 DDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATAC-MKLEE--YETAKV 91 (374)
Q Consensus 15 ~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~-~~lg~--~~eA~~ 91 (374)
.++.++++..|.++|..+|++...|..+|.+|..+|++++|+..|++|++++|+++.+++.+|.++ +..|+ +.+|..
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~ 131 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTRE 131 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHH
Confidence 567799999999999999999999999999999999999999999999999999999999999985 67788 599999
Q ss_pred HHHHHHhcCCCChhHHHHHHHHHHHHHhh
Q 017264 92 ALEKGASLAPGDSRFTNLIKECEERIAEE 120 (374)
Q Consensus 92 ~~~~a~~l~p~~~~~~~~~~~~~~~l~~~ 120 (374)
.|+++++++|++......++.+...++..
T Consensus 132 ~l~~al~~dP~~~~al~~LA~~~~~~g~~ 160 (198)
T PRK10370 132 MIDKALALDANEVTALMLLASDAFMQADY 160 (198)
T ss_pred HHHHHHHhCCCChhHHHHHHHHHHHcCCH
Confidence 99999999999999988888877766554
No 62
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.08 E-value=1.1e-09 Score=105.35 Aligned_cols=113 Identities=19% Similarity=0.269 Sum_probs=81.7
Q ss_pred HHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHH
Q 017264 8 KAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYE 87 (374)
Q Consensus 8 ~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~ 87 (374)
.||.+-..++.+.|+.+|.+||+++|....+|.-+|+-|..+++...|++.|++|+.++|.+-.+||.+|++|.-++...
T Consensus 336 IaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~ 415 (559)
T KOG1155|consen 336 IANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHF 415 (559)
T ss_pred ehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchH
Confidence 45666666677777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhh
Q 017264 88 TAKVALEKGASLAPGDSRFTNLIKECEERIAEE 120 (374)
Q Consensus 88 eA~~~~~~a~~l~p~~~~~~~~~~~~~~~l~~~ 120 (374)
=|+.+|++++.+-|.|+.++..++.|..++.+.
T Consensus 416 YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~ 448 (559)
T KOG1155|consen 416 YALYYFQKALELKPNDSRLWVALGECYEKLNRL 448 (559)
T ss_pred HHHHHHHHHHhcCCCchHHHHHHHHHHHHhccH
Confidence 777777777777777777777777777666665
No 63
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.08 E-value=2.7e-10 Score=112.18 Aligned_cols=99 Identities=21% Similarity=0.293 Sum_probs=94.8
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Q 017264 4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKL 83 (374)
Q Consensus 4 ~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~l 83 (374)
-....|..|+..|+|+.|+++|+.||...|++..+|.++|..+..-.+.++|+..|.+|++|.|++.++.|++|++|.++
T Consensus 432 vQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNl 511 (579)
T KOG1125|consen 432 VQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNL 511 (579)
T ss_pred HHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhh
Confidence 34568999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCHHHHHHHHHHHHhcCCC
Q 017264 84 EEYETAKVALEKGASLAPG 102 (374)
Q Consensus 84 g~~~eA~~~~~~a~~l~p~ 102 (374)
|.|.+|+..|-.++.+.+.
T Consensus 512 G~ykEA~~hlL~AL~mq~k 530 (579)
T KOG1125|consen 512 GAYKEAVKHLLEALSMQRK 530 (579)
T ss_pred hhHHHHHHHHHHHHHhhhc
Confidence 9999999999999998765
No 64
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.07 E-value=2.7e-09 Score=102.76 Aligned_cols=117 Identities=17% Similarity=0.145 Sum_probs=111.1
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Q 017264 4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKL 83 (374)
Q Consensus 4 ~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~l 83 (374)
.+--.|..++..++-..|++.|++|++++|.+..+|+.+|++|.-++.+.-|+-+|++|+.+.|+++..|..+|.||..+
T Consensus 366 aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl 445 (559)
T KOG1155|consen 366 AWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKL 445 (559)
T ss_pred HHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHh
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhh
Q 017264 84 EEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE 120 (374)
Q Consensus 84 g~~~eA~~~~~~a~~l~p~~~~~~~~~~~~~~~l~~~ 120 (374)
++.++|+.||.+++.+.-.+..+...++++.+++...
T Consensus 446 ~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~ 482 (559)
T KOG1155|consen 446 NRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDL 482 (559)
T ss_pred ccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhH
Confidence 9999999999999999988888999999999888775
No 65
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.07 E-value=4e-09 Score=96.25 Aligned_cols=106 Identities=25% Similarity=0.245 Sum_probs=97.3
Q ss_pred hHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHH---HHHH
Q 017264 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSA---ELFADRAQASIKLQNFTEAVADANRAIELEPSMSK---AYWR 75 (374)
Q Consensus 2 a~~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~---~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~---a~~~ 75 (374)
++.++..|..++..|+|+.|+..|.+++...|.++ .+++.+|.+|..+|++++|+..++++++..|+++. +++.
T Consensus 33 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~ 112 (235)
T TIGR03302 33 AEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYL 112 (235)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHH
Confidence 45789999999999999999999999999999876 57899999999999999999999999999998765 7999
Q ss_pred HHHHHHHh--------cCHHHHHHHHHHHHhcCCCChhHH
Q 017264 76 KATACMKL--------EEYETAKVALEKGASLAPGDSRFT 107 (374)
Q Consensus 76 lg~~~~~l--------g~~~eA~~~~~~a~~l~p~~~~~~ 107 (374)
+|.+++.. |++++|+..|++++..+|++....
T Consensus 113 ~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 152 (235)
T TIGR03302 113 RGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAP 152 (235)
T ss_pred HHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHH
Confidence 99999987 899999999999999999987543
No 66
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.07 E-value=2.8e-09 Score=109.63 Aligned_cols=117 Identities=14% Similarity=0.131 Sum_probs=108.1
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 017264 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK 82 (374)
Q Consensus 3 ~~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~ 82 (374)
+.++.+||.+|..|++++|..++.++|+++|.++.+|+.+|.+|.++|+.++|+..+-.|..++|++.+.|.+++.....
T Consensus 140 ~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~ 219 (895)
T KOG2076|consen 140 RQLLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQ 219 (895)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHh
Confidence 56889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHh
Q 017264 83 LEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAE 119 (374)
Q Consensus 83 lg~~~eA~~~~~~a~~l~p~~~~~~~~~~~~~~~l~~ 119 (374)
+|.+.+|..||.++++++|.+..+......+..+.+.
T Consensus 220 ~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~ 256 (895)
T KOG2076|consen 220 LGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGD 256 (895)
T ss_pred cccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCh
Confidence 9999999999999999999998766666555554443
No 67
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.06 E-value=8.2e-09 Score=97.97 Aligned_cols=102 Identities=15% Similarity=0.163 Sum_probs=87.9
Q ss_pred hHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH-----------
Q 017264 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMS----------- 70 (374)
Q Consensus 2 a~~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~----------- 70 (374)
+..+...|..+...|+|++|+..|+++|+++|++..++.++|.+|+..|++++|+++++++++++|+++
T Consensus 98 ~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~l~~~ 177 (296)
T PRK11189 98 ADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPYRALWLYLAES 177 (296)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHc
Confidence 456788999999999999999999999999999999999999999999999999999988887766321
Q ss_pred -----------------------------------------------------------HHHHHHHHHHHHhcCHHHHHH
Q 017264 71 -----------------------------------------------------------KAYWRKATACMKLEEYETAKV 91 (374)
Q Consensus 71 -----------------------------------------------------------~a~~~lg~~~~~lg~~~eA~~ 91 (374)
++|+++|.++..+|++++|+.
T Consensus 178 ~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~ 257 (296)
T PRK11189 178 KLDPKQAKENLKQRYEKLDKEQWGWNIVEFYLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAA 257 (296)
T ss_pred cCCHHHHHHHHHHHHhhCCccccHHHHHHHHccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
Confidence 246677888888899999999
Q ss_pred HHHHHHhcCCCC
Q 017264 92 ALEKGASLAPGD 103 (374)
Q Consensus 92 ~~~~a~~l~p~~ 103 (374)
+|++++.++|.+
T Consensus 258 ~~~~Al~~~~~~ 269 (296)
T PRK11189 258 LFKLALANNVYN 269 (296)
T ss_pred HHHHHHHhCCch
Confidence 999999888743
No 68
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.06 E-value=2.8e-10 Score=113.66 Aligned_cols=118 Identities=18% Similarity=0.278 Sum_probs=112.1
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 017264 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK 82 (374)
Q Consensus 3 ~~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~ 82 (374)
+.+...||.+--+++++.||+.|.+|+.++|+.+.+|..+|.=+..+..|+.|...|+.||..+|.+-.|||.+|.+|.+
T Consensus 422 esWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~K 501 (638)
T KOG1126|consen 422 ESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLK 501 (638)
T ss_pred HHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhheec
Confidence 45778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhh
Q 017264 83 LEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE 120 (374)
Q Consensus 83 lg~~~eA~~~~~~a~~l~p~~~~~~~~~~~~~~~l~~~ 120 (374)
+++++.|...|++|++++|.+..+.-.+...+.+++..
T Consensus 502 qek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~ 539 (638)
T KOG1126|consen 502 QEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRK 539 (638)
T ss_pred cchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhh
Confidence 99999999999999999999999988888888877765
No 69
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.06 E-value=1.7e-09 Score=89.78 Aligned_cols=98 Identities=22% Similarity=0.239 Sum_probs=92.1
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCC
Q 017264 23 DLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPG 102 (374)
Q Consensus 23 ~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~a~~l~p~ 102 (374)
.+|.+++..+|.+..+++.+|.+++..|++.+|+..+++++.++|.++.+++++|.+++.+|++++|+.+|++++.++|+
T Consensus 4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~ 83 (135)
T TIGR02552 4 ATLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPD 83 (135)
T ss_pred hhHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHHHHHhh
Q 017264 103 DSRFTNLIKECEERIAEE 120 (374)
Q Consensus 103 ~~~~~~~~~~~~~~l~~~ 120 (374)
+......++.+...+++.
T Consensus 84 ~~~~~~~la~~~~~~g~~ 101 (135)
T TIGR02552 84 DPRPYFHAAECLLALGEP 101 (135)
T ss_pred ChHHHHHHHHHHHHcCCH
Confidence 999888888887766554
No 70
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.05 E-value=6.9e-09 Score=92.55 Aligned_cols=117 Identities=15% Similarity=0.151 Sum_probs=97.1
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHH
Q 017264 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELE--PSMSKAYWRKATAC 80 (374)
Q Consensus 3 ~~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~--p~~~~a~~~lg~~~ 80 (374)
..+...|..++..|++++|+..|.+++...|.+..++.++|.+|..+|++++|+..+.+++... +.....++.+|.++
T Consensus 66 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~ 145 (234)
T TIGR02521 66 LAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCA 145 (234)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHH
Confidence 3456788899999999999999999999999988899999999999999999999999998754 45667888899999
Q ss_pred HHhcCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHh
Q 017264 81 MKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAE 119 (374)
Q Consensus 81 ~~lg~~~eA~~~~~~a~~l~p~~~~~~~~~~~~~~~l~~ 119 (374)
+..|++++|...|.+++..+|++......++.+....+.
T Consensus 146 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~ 184 (234)
T TIGR02521 146 LKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQ 184 (234)
T ss_pred HHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCC
Confidence 999999999999999999988887766666665544433
No 71
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=99.05 E-value=6.9e-09 Score=96.44 Aligned_cols=106 Identities=11% Similarity=0.006 Sum_probs=95.5
Q ss_pred HHHHHHHHHH-HhccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC---CHHHHHH
Q 017264 3 TDLEKKAKEA-FIDDYFELAYDLYSQAIEISPNS---AELFADRAQASIKLQNFTEAVADANRAIELEPS---MSKAYWR 75 (374)
Q Consensus 3 ~~l~~~g~~~-~~~~~y~~Al~~y~~aL~~~p~~---~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~---~~~a~~~ 75 (374)
...+..|..+ +..|+|++|+..|...+...|++ +.+++.+|.+|+..|+|.+|+..|.+++...|+ .+++++.
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~k 222 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFK 222 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHH
Confidence 3456777776 67899999999999999999998 579999999999999999999999999999886 5789999
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHhcCCCChhHHH
Q 017264 76 KATACMKLEEYETAKVALEKGASLAPGDSRFTN 108 (374)
Q Consensus 76 lg~~~~~lg~~~eA~~~~~~a~~l~p~~~~~~~ 108 (374)
+|.++..+|+++.|+..|+++++..|+......
T Consensus 223 lg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a~~ 255 (263)
T PRK10803 223 VGVIMQDKGDTAKAKAVYQQVIKKYPGTDGAKQ 255 (263)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHH
Confidence 999999999999999999999999998875443
No 72
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=99.04 E-value=8.5e-09 Score=89.45 Aligned_cols=103 Identities=18% Similarity=0.210 Sum_probs=88.4
Q ss_pred hHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 017264 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNS---AELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKAT 78 (374)
Q Consensus 2 a~~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~---~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~ 78 (374)
+..+...|..++..|+|++|+..|.+++.+.++. +.++.++|.+|..+|++++|+..+.+++.++|.....++.+|.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~ 114 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAV 114 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHH
Confidence 3456889999999999999999999999987653 4589999999999999999999999999999999999999999
Q ss_pred HHH-------HhcCHH-------HHHHHHHHHHhcCCCCh
Q 017264 79 ACM-------KLEEYE-------TAKVALEKGASLAPGDS 104 (374)
Q Consensus 79 ~~~-------~lg~~~-------eA~~~~~~a~~l~p~~~ 104 (374)
++. .+|+++ +|+..|++++.++|.+.
T Consensus 115 i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~ 154 (168)
T CHL00033 115 ICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNY 154 (168)
T ss_pred HHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccH
Confidence 998 677766 55666666777787654
No 73
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.03 E-value=4.4e-09 Score=113.89 Aligned_cols=111 Identities=23% Similarity=0.296 Sum_probs=102.1
Q ss_pred HHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHH
Q 017264 9 AKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYET 88 (374)
Q Consensus 9 g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~e 88 (374)
+..+...|++++|+.+|.+++..+|+ +.++.++|.++.++|++++|+..|.+++.++|+++.+++.+|.++..+|++++
T Consensus 583 a~~l~~~Gr~~eAl~~~~~AL~l~P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~ee 661 (987)
T PRK09782 583 HAQRYIPGQPELALNDLTRSLNIAPS-ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQ 661 (987)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHH
Confidence 33444559999999999999999997 99999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCChhHHHHHHHHHHHHHhh
Q 017264 89 AKVALEKGASLAPGDSRFTNLIKECEERIAEE 120 (374)
Q Consensus 89 A~~~~~~a~~l~p~~~~~~~~~~~~~~~l~~~ 120 (374)
|+.+|+++++++|++..+...++.+...++..
T Consensus 662 Ai~~l~~AL~l~P~~~~a~~nLA~al~~lGd~ 693 (987)
T PRK09782 662 SREMLERAHKGLPDDPALIRQLAYVNQRLDDM 693 (987)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCH
Confidence 99999999999999999998888887765553
No 74
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.02 E-value=6.6e-09 Score=93.82 Aligned_cols=116 Identities=19% Similarity=0.155 Sum_probs=109.4
Q ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc
Q 017264 5 LEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLE 84 (374)
Q Consensus 5 l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~lg 84 (374)
+..+|..++..|+|..|+..+.++....|++..++..+|.+|.++|++++|...|.+++++.|+.+.+.-++|..|+-.|
T Consensus 103 l~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~g 182 (257)
T COG5010 103 LAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRG 182 (257)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcC
Confidence 34589999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhh
Q 017264 85 EYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE 120 (374)
Q Consensus 85 ~~~eA~~~~~~a~~l~p~~~~~~~~~~~~~~~l~~~ 120 (374)
+++.|...+..+...-+.+..+...+..+-...+..
T Consensus 183 d~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~ 218 (257)
T COG5010 183 DLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDF 218 (257)
T ss_pred CHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCCh
Confidence 999999999999988888999999998887766665
No 75
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.01 E-value=7.2e-09 Score=92.54 Aligned_cols=116 Identities=24% Similarity=0.334 Sum_probs=100.2
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHHh--------CCCC----------HHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q 017264 4 DLEKKAKEAFIDDYFELAYDLYSQAIEI--------SPNS----------AELFADRAQASIKLQNFTEAVADANRAIEL 65 (374)
Q Consensus 4 ~l~~~g~~~~~~~~y~~Al~~y~~aL~~--------~p~~----------~~~~~~ra~~~~~l~~~~~Al~~~~~al~l 65 (374)
.+...||.+|+.|+|.+|...|..||-. .|.. ..++.|.++|++..++|.++++.+...|..
T Consensus 180 ~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~~ 259 (329)
T KOG0545|consen 180 VLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILRH 259 (329)
T ss_pred HHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhc
Confidence 4778999999999999999999998764 4444 357899999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChh-HHHHHHHHHHHHHh
Q 017264 66 EPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSR-FTNLIKECEERIAE 119 (374)
Q Consensus 66 ~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~a~~l~p~~~~-~~~~~~~~~~~l~~ 119 (374)
+|++.++||++|.++...-+.++|.+.|.++++++|.-.. +...+..++.+...
T Consensus 260 ~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasvVsrElr~le~r~~e 314 (329)
T KOG0545|consen 260 HPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASVVSRELRLLENRMAE 314 (329)
T ss_pred CCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999997654 44445555555443
No 76
>KOG2265 consensus Nuclear distribution protein NUDC [Signal transduction mechanisms]
Probab=99.01 E-value=2e-09 Score=90.85 Aligned_cols=87 Identities=18% Similarity=0.234 Sum_probs=72.2
Q ss_pred cCccccccCCeEEEEEEe-CCC-CCCceEEEEeeeEEEEEEEcCCCCeeeeccccccccccCceEEEEcCcE-EEEEEee
Q 017264 174 YRHEFYQKPEEVVVTVFA-KGI-PAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVLSTK-VEIRLAK 250 (374)
Q Consensus 174 ~r~~W~Qt~~~V~i~i~~-k~~-~~~~v~v~~~~~~l~v~~~~~~~~~y~~~~~L~~~I~p~~s~~~v~~~k-iei~L~K 250 (374)
-.|.|+||-+.|.|.|.+ +|+ +..+|.|.+.+++|.|.++ |.+-.++.+|+++|.++.|.|+|.+.+ |.|.|+|
T Consensus 19 ~~y~W~QtL~EV~i~i~vp~~~~ksk~v~~~Iq~~hI~V~~k---g~~~ildG~L~~~vk~des~WtiEd~k~i~i~l~K 95 (179)
T KOG2265|consen 19 EKYTWDQTLEEVEIQIPVPPGTAKSKDVHCSIQSKHIKVGLK---GQPPILDGELSHSVKVDESTWTIEDGKMIVILLKK 95 (179)
T ss_pred cceeeeeehhheEEEeecCCCCcccceEEEEeeeeEEEEecC---CCCceecCccccccccccceEEecCCEEEEEEeec
Confidence 369999999999999865 666 7899999999999999986 555678899999999999999999986 5555555
Q ss_pred cCC-CCCCccccCC
Q 017264 251 AEP-IQWSSLEFSK 263 (374)
Q Consensus 251 ~~~-~~W~~L~~~~ 263 (374)
... ..|.+|....
T Consensus 96 ~~~~eWW~~ll~ge 109 (179)
T KOG2265|consen 96 SNKMEWWDSLLEGE 109 (179)
T ss_pred cchHHHHHHHHcCC
Confidence 553 7899998643
No 77
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.00 E-value=2.4e-09 Score=100.66 Aligned_cols=117 Identities=21% Similarity=0.193 Sum_probs=100.5
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Q 017264 4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKL 83 (374)
Q Consensus 4 ~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~l 83 (374)
-+...|..+.+.|++++|+..|.++|+.+|++..++..++.++..+|++.++...+.......|.++..+..+|.+++.+
T Consensus 148 ~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~l 227 (280)
T PF13429_consen 148 FWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQL 227 (280)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccc
Confidence 46678999999999999999999999999999999999999999999999999988888888888888999999999999
Q ss_pred cCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhh
Q 017264 84 EEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE 120 (374)
Q Consensus 84 g~~~eA~~~~~~a~~l~p~~~~~~~~~~~~~~~l~~~ 120 (374)
|++++|+.+|++++..+|+|+.+...++.+....+..
T Consensus 228 g~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~ 264 (280)
T PF13429_consen 228 GRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRK 264 (280)
T ss_dssp T-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT-----
T ss_pred ccccccccccccccccccccccccccccccccccccc
Confidence 9999999999999999999999999999888777665
No 78
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.98 E-value=2.1e-09 Score=77.82 Aligned_cols=62 Identities=23% Similarity=0.350 Sum_probs=31.6
Q ss_pred HHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC
Q 017264 8 KAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSM 69 (374)
Q Consensus 8 ~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~ 69 (374)
.|..++..|+|++|+..|.++++.+|.++.+++.+|.|+..+|++++|+..|++++.++|++
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~ 64 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDN 64 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 44555555555555555555555555555555555555555555555555555555555543
No 79
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.98 E-value=1.7e-09 Score=78.36 Aligned_cols=65 Identities=20% Similarity=0.326 Sum_probs=60.6
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCh
Q 017264 40 ADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDS 104 (374)
Q Consensus 40 ~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~a~~l~p~~~ 104 (374)
+.+|..+++.|+|++|+..|++++..+|+++.+++.+|.+++.+|++++|+..|++++.++|+++
T Consensus 1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 1 YALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred ChHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 46899999999999999999999999999999999999999999999999999999999999875
No 80
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=98.98 E-value=8.5e-09 Score=108.20 Aligned_cols=108 Identities=13% Similarity=0.047 Sum_probs=69.1
Q ss_pred HHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHH----HHHHHHHHHHhCCCCHHHHHHHHHHHHHhc
Q 017264 9 AKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTE----AVADANRAIELEPSMSKAYWRKATACMKLE 84 (374)
Q Consensus 9 g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~----Al~~~~~al~l~p~~~~a~~~lg~~~~~lg 84 (374)
+..++..|++++|+..|.+++..+|.++.++..+|.+|..+|++++ |+..|++++.++|++..+++.+|.++..+|
T Consensus 219 ~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g 298 (656)
T PRK15174 219 VDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTG 298 (656)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCC
Confidence 4555666666666666666666666666666666666666666664 566666666666666666666666666666
Q ss_pred CHHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Q 017264 85 EYETAKVALEKGASLAPGDSRFTNLIKECEER 116 (374)
Q Consensus 85 ~~~eA~~~~~~a~~l~p~~~~~~~~~~~~~~~ 116 (374)
++++|+.+|++++.++|++..+...++.+...
T Consensus 299 ~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~ 330 (656)
T PRK15174 299 QNEKAIPLLQQSLATHPDLPYVRAMYARALRQ 330 (656)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 66666666666666666666555555554433
No 81
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=98.97 E-value=1e-08 Score=107.64 Aligned_cols=110 Identities=12% Similarity=0.087 Sum_probs=91.8
Q ss_pred HHHHHHHHHHhccCHHH----HHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 017264 4 DLEKKAKEAFIDDYFEL----AYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATA 79 (374)
Q Consensus 4 ~l~~~g~~~~~~~~y~~----Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~ 79 (374)
.+...|..++..|++++ |+..|.+++..+|+++.++..+|.+|..+|++++|+..+++++.++|+++.+++.+|.+
T Consensus 248 ~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~ 327 (656)
T PRK15174 248 LRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARA 327 (656)
T ss_pred HHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 45667888888888885 78889999999998888888899999999999999999999999999888888888999
Q ss_pred HHHhcCHHHHHHHHHHHHhcCCCChhHHHHHHHH
Q 017264 80 CMKLEEYETAKVALEKGASLAPGDSRFTNLIKEC 113 (374)
Q Consensus 80 ~~~lg~~~eA~~~~~~a~~l~p~~~~~~~~~~~~ 113 (374)
|..+|++++|+..|++++..+|++......++.+
T Consensus 328 l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~a 361 (656)
T PRK15174 328 LRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAA 361 (656)
T ss_pred HHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHH
Confidence 9999999999999988888888876544433333
No 82
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.97 E-value=1.7e-08 Score=83.94 Aligned_cols=105 Identities=23% Similarity=0.233 Sum_probs=94.3
Q ss_pred hHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---HHHHHH
Q 017264 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNS---AELFADRAQASIKLQNFTEAVADANRAIELEPSM---SKAYWR 75 (374)
Q Consensus 2 a~~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~---~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~---~~a~~~ 75 (374)
+..++..|..+++.|+|.+|++.|..+....|.. ..+.+.++.+|++.++|++|+..+++.++|+|.+ .-++|.
T Consensus 10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~ 89 (142)
T PF13512_consen 10 PQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYM 89 (142)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHH
Confidence 4578999999999999999999999999987765 5789999999999999999999999999999976 458999
Q ss_pred HHHHHHHhcC---------------HHHHHHHHHHHHhcCCCChhH
Q 017264 76 KATACMKLEE---------------YETAKVALEKGASLAPGDSRF 106 (374)
Q Consensus 76 lg~~~~~lg~---------------~~eA~~~~~~a~~l~p~~~~~ 106 (374)
+|.+++.+.. ...|+..|+..++..|+..-.
T Consensus 90 ~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ya 135 (142)
T PF13512_consen 90 RGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEYA 135 (142)
T ss_pred HHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChhH
Confidence 9999999987 888999999999999887643
No 83
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.96 E-value=1.2e-08 Score=90.52 Aligned_cols=114 Identities=15% Similarity=0.105 Sum_probs=101.4
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHH
Q 017264 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELE--PSMSKAYWRKATAC 80 (374)
Q Consensus 3 ~~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~--p~~~~a~~~lg~~~ 80 (374)
..+...|..+...|+.+.|-+.|.+||.++|++..++.|.|..++.+|+|++|.+.|++|+..- +..+..+-++|.|.
T Consensus 70 ~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Ca 149 (250)
T COG3063 70 LAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCA 149 (250)
T ss_pred HHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHH
Confidence 3466788999999999999999999999999999999999999999999999999999999542 35678999999999
Q ss_pred HHhcCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Q 017264 81 MKLEEYETAKVALEKGASLAPGDSRFTNLIKECEER 116 (374)
Q Consensus 81 ~~lg~~~eA~~~~~~a~~l~p~~~~~~~~~~~~~~~ 116 (374)
++.|+++.|...|+++++++|+++.....+.+.+.+
T Consensus 150 l~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~ 185 (250)
T COG3063 150 LKAGQFDQAEEYLKRALELDPQFPPALLELARLHYK 185 (250)
T ss_pred hhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHh
Confidence 999999999999999999999998766655555443
No 84
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=98.95 E-value=2.8e-08 Score=80.64 Aligned_cols=101 Identities=27% Similarity=0.308 Sum_probs=92.0
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC----HHHHHHHHH
Q 017264 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSM----SKAYWRKAT 78 (374)
Q Consensus 3 ~~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~----~~a~~~lg~ 78 (374)
..+-.+|..+...|+.+.|++.|.++|.+.|..+.+|.+||.+|.-.|+.++|+.++++|+++.... -.+|..+|.
T Consensus 44 ~~LEl~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~ 123 (175)
T KOG4555|consen 44 RELELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGL 123 (175)
T ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHH
Confidence 3566789999999999999999999999999999999999999999999999999999999997653 347889999
Q ss_pred HHHHhcCHHHHHHHHHHHHhcCCCC
Q 017264 79 ACMKLEEYETAKVALEKGASLAPGD 103 (374)
Q Consensus 79 ~~~~lg~~~eA~~~~~~a~~l~p~~ 103 (374)
+|..+|+-+.|...|+.+-++....
T Consensus 124 lyRl~g~dd~AR~DFe~AA~LGS~F 148 (175)
T KOG4555|consen 124 LYRLLGNDDAARADFEAAAQLGSKF 148 (175)
T ss_pred HHHHhCchHHHHHhHHHHHHhCCHH
Confidence 9999999999999999998887654
No 85
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.94 E-value=4e-08 Score=90.82 Aligned_cols=117 Identities=21% Similarity=0.169 Sum_probs=103.6
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc---cCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 017264 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKL---QNFTEAVADANRAIELEPSMSKAYWRKATA 79 (374)
Q Consensus 3 ~~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l---~~~~~Al~~~~~al~l~p~~~~a~~~lg~~ 79 (374)
+-+...|..++..+++..|+..|.+|+++.|+++.++..+|.+++.. ..-.++...+++++.++|.+..+.+.+|..
T Consensus 157 egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~lLA~~ 236 (287)
T COG4235 157 EGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSLLAFA 236 (287)
T ss_pred hhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHHHHHH
Confidence 45678999999999999999999999999999999999999998775 456789999999999999999999999999
Q ss_pred HHHhcCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHh
Q 017264 80 CMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAE 119 (374)
Q Consensus 80 ~~~lg~~~eA~~~~~~a~~l~p~~~~~~~~~~~~~~~l~~ 119 (374)
++..|+|.+|...++..+.+.|.+..-...+.+.......
T Consensus 237 afe~g~~~~A~~~Wq~lL~~lp~~~~rr~~ie~~ia~~~~ 276 (287)
T COG4235 237 AFEQGDYAEAAAAWQMLLDLLPADDPRRSLIERSIARALA 276 (287)
T ss_pred HHHcccHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHh
Confidence 9999999999999999999999887766666555444433
No 86
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=98.91 E-value=3.3e-08 Score=105.66 Aligned_cols=112 Identities=11% Similarity=0.100 Sum_probs=105.5
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 017264 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK 82 (374)
Q Consensus 3 ~~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~ 82 (374)
..+...|..+...|++++|+.+|.++|..+|.++.++..+|.++...|++++|+..+++++..+|++.. ++.+|.++..
T Consensus 50 ~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~ 128 (765)
T PRK10049 50 RGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKR 128 (765)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHH
Confidence 357889999999999999999999999999999999999999999999999999999999999999999 9999999999
Q ss_pred hcCHHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Q 017264 83 LEEYETAKVALEKGASLAPGDSRFTNLIKECEE 115 (374)
Q Consensus 83 lg~~~eA~~~~~~a~~l~p~~~~~~~~~~~~~~ 115 (374)
.|++.+|+.+|++++.+.|++..+...++.+..
T Consensus 129 ~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~ 161 (765)
T PRK10049 129 AGRHWDELRAMTQALPRAPQTQQYPTEYVQALR 161 (765)
T ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 999999999999999999999988777766543
No 87
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.90 E-value=4.3e-08 Score=89.61 Aligned_cols=110 Identities=15% Similarity=0.131 Sum_probs=100.1
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---HHHHHHH
Q 017264 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNS---AELFADRAQASIKLQNFTEAVADANRAIELEPSM---SKAYWRK 76 (374)
Q Consensus 3 ~~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~---~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~---~~a~~~l 76 (374)
..+++.|..+++.|+|..|...|...|+..|++ +.+++-+|.+++.+|+|.+|...|..+++-.|+. ++++|.+
T Consensus 142 ~~~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKl 221 (262)
T COG1729 142 TKLYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKL 221 (262)
T ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHH
Confidence 457899999999999999999999999999887 6899999999999999999999999999988764 7899999
Q ss_pred HHHHHHhcCHHHHHHHHHHHHhcCCCChhHHHHHHH
Q 017264 77 ATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKE 112 (374)
Q Consensus 77 g~~~~~lg~~~eA~~~~~~a~~l~p~~~~~~~~~~~ 112 (374)
|.++..+|+.++|...|+++++..|+......-...
T Consensus 222 g~~~~~l~~~d~A~atl~qv~k~YP~t~aA~~Ak~~ 257 (262)
T COG1729 222 GVSLGRLGNTDEACATLQQVIKRYPGTDAAKLAKVA 257 (262)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHCCCCHHHHHHHHH
Confidence 999999999999999999999999998865544433
No 88
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.90 E-value=3.5e-08 Score=103.24 Aligned_cols=116 Identities=13% Similarity=0.035 Sum_probs=103.3
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 017264 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK 82 (374)
Q Consensus 3 ~~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~ 82 (374)
......|..+.+.+.+++|+..+.++|..+|+++.+++.+|.|+.++|+|++|+..|++++..+|++..+++.+|.++..
T Consensus 121 ~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~ 200 (694)
T PRK15179 121 EAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTR 200 (694)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCHHHHHHHHHHHHhcCCCCh-hHHHHHHHHHHHHH
Q 017264 83 LEEYETAKVALEKGASLAPGDS-RFTNLIKECEERIA 118 (374)
Q Consensus 83 lg~~~eA~~~~~~a~~l~p~~~-~~~~~~~~~~~~l~ 118 (374)
+|+.++|..+|++++.+..+-. .+...+.++.+.+.
T Consensus 201 ~G~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 237 (694)
T PRK15179 201 RGALWRARDVLQAGLDAIGDGARKLTRRLVDLNADLA 237 (694)
T ss_pred cCCHHHHHHHHHHHHHhhCcchHHHHHHHHHHHHHHH
Confidence 9999999999999998765443 33455555554433
No 89
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.87 E-value=4.2e-08 Score=89.49 Aligned_cols=118 Identities=15% Similarity=0.077 Sum_probs=100.6
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHc--------cCHHHHHHHHHHHHHhCCCCHH
Q 017264 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAE---LFADRAQASIKL--------QNFTEAVADANRAIELEPSMSK 71 (374)
Q Consensus 3 ~~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~---~~~~ra~~~~~l--------~~~~~Al~~~~~al~l~p~~~~ 71 (374)
+.++..|..++..|++++|+..|.++++..|+++. +++.+|.++..+ |++++|+..+.+++..+|++..
T Consensus 71 ~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 150 (235)
T TIGR03302 71 QAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEY 150 (235)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChh
Confidence 35678999999999999999999999999998765 789999999986 8899999999999999998754
Q ss_pred HH-----------------HHHHHHHHHhcCHHHHHHHHHHHHhcCCCCh---hHHHHHHHHHHHHHhh
Q 017264 72 AY-----------------WRKATACMKLEEYETAKVALEKGASLAPGDS---RFTNLIKECEERIAEE 120 (374)
Q Consensus 72 a~-----------------~~lg~~~~~lg~~~eA~~~~~~a~~l~p~~~---~~~~~~~~~~~~l~~~ 120 (374)
++ +.+|.+++..|++.+|+..|+.++...|+.+ .....+..+...+++.
T Consensus 151 ~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~ 219 (235)
T TIGR03302 151 APDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLK 219 (235)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCH
Confidence 32 4678899999999999999999999988754 5666677776666554
No 90
>PLN02789 farnesyltranstransferase
Probab=98.85 E-value=7.3e-08 Score=92.20 Aligned_cols=112 Identities=12% Similarity=-0.014 Sum_probs=80.5
Q ss_pred HHHHHHHHHHhcc-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCH--HHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 017264 4 DLEKKAKEAFIDD-YFELAYDLYSQAIEISPNSAELFADRAQASIKLQNF--TEAVADANRAIELEPSMSKAYWRKATAC 80 (374)
Q Consensus 4 ~l~~~g~~~~~~~-~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~--~~Al~~~~~al~l~p~~~~a~~~lg~~~ 80 (374)
.+..+|..+...+ ++.+|+..+++++..+|.+..++..|+.++.++++. .+++..+.+++.++|++..+|..+|.++
T Consensus 73 aW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l 152 (320)
T PLN02789 73 VWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVL 152 (320)
T ss_pred HHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 3455666666666 567777777777777777777777777777777653 5667777777777777777777777777
Q ss_pred HHhcCHHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Q 017264 81 MKLEEYETAKVALEKGASLAPGDSRFTNLIKECEE 115 (374)
Q Consensus 81 ~~lg~~~eA~~~~~~a~~l~p~~~~~~~~~~~~~~ 115 (374)
..+|+|++|+.++.++++.+|.|..+......+..
T Consensus 153 ~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~ 187 (320)
T PLN02789 153 RTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVIT 187 (320)
T ss_pred HHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHH
Confidence 77777777777777777777777766665555533
No 91
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=98.84 E-value=1.6e-07 Score=84.21 Aligned_cols=119 Identities=27% Similarity=0.250 Sum_probs=95.8
Q ss_pred hHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---HHHHHH
Q 017264 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNS---AELFADRAQASIKLQNFTEAVADANRAIELEPSM---SKAYWR 75 (374)
Q Consensus 2 a~~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~---~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~---~~a~~~ 75 (374)
++.++..|..++..|+|.+|+..|.+++...|.+ ..+.+.+|.+|++.|+|..|+..+++.+...|++ ..++|.
T Consensus 5 ~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~ 84 (203)
T PF13525_consen 5 AEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYM 84 (203)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHH
Confidence 4678999999999999999999999999998876 5789999999999999999999999999999975 568999
Q ss_pred HHHHHHHhcC-----------HHHHHHHHHHHHhcCCCChh---HHHHHHHHHHHHHhh
Q 017264 76 KATACMKLEE-----------YETAKVALEKGASLAPGDSR---FTNLIKECEERIAEE 120 (374)
Q Consensus 76 lg~~~~~lg~-----------~~eA~~~~~~a~~l~p~~~~---~~~~~~~~~~~l~~~ 120 (374)
+|.+++.+.+ ..+|+..|+..+...|+..- +...+..+..+|...
T Consensus 85 ~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~ 143 (203)
T PF13525_consen 85 LGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEH 143 (203)
T ss_dssp HHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHH
Confidence 9999887643 35899999999999999864 445555666555443
No 92
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.83 E-value=7.4e-08 Score=93.76 Aligned_cols=117 Identities=15% Similarity=0.182 Sum_probs=112.1
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Q 017264 4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKL 83 (374)
Q Consensus 4 ~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~l 83 (374)
..+..+...+..|.++.|+..++..+...|+|+.++..++.++++.++..+|++.+++++.++|+.+...+++|.+|...
T Consensus 308 a~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~ 387 (484)
T COG4783 308 AQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKG 387 (484)
T ss_pred HHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhc
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhh
Q 017264 84 EEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE 120 (374)
Q Consensus 84 g~~~eA~~~~~~a~~l~p~~~~~~~~~~~~~~~l~~~ 120 (374)
|++.+|+..+...+..+|+++..+..++++...++..
T Consensus 388 g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~ 424 (484)
T COG4783 388 GKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNR 424 (484)
T ss_pred CChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCch
Confidence 9999999999999999999999999999999888775
No 93
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.83 E-value=1.1e-08 Score=74.56 Aligned_cols=67 Identities=19% Similarity=0.203 Sum_probs=47.5
Q ss_pred HHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 017264 12 AFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKAT 78 (374)
Q Consensus 12 ~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~ 78 (374)
++..|+|++|+.+|.+++..+|++..+++.+|.||+++|++++|...+.+++..+|+++.++..++.
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~ 67 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQ 67 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred ChhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence 4566777777777777777777777777777777777777777777777777777776666555543
No 94
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=98.82 E-value=7.3e-08 Score=103.02 Aligned_cols=114 Identities=23% Similarity=0.186 Sum_probs=103.4
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 017264 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK 82 (374)
Q Consensus 3 ~~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~ 82 (374)
..+...|..++..|+|++|+..|.+++..+|.+..+++.+|.++...|++++|+..+++++..+|.+..+++.+|.+++.
T Consensus 126 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (899)
T TIGR02917 126 ELLALRGLAYLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVDALLLKGDLLLS 205 (899)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHh
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Q 017264 83 LEEYETAKVALEKGASLAPGDSRFTNLIKECEER 116 (374)
Q Consensus 83 lg~~~eA~~~~~~a~~l~p~~~~~~~~~~~~~~~ 116 (374)
.|++++|+.+|++++.++|.+......+..+...
T Consensus 206 ~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~ 239 (899)
T TIGR02917 206 LGNIELALAAYRKAIALRPNNPAVLLALATILIE 239 (899)
T ss_pred cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Confidence 9999999999999999999988776666555433
No 95
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.80 E-value=2.5e-07 Score=85.25 Aligned_cols=119 Identities=18% Similarity=0.141 Sum_probs=98.4
Q ss_pred hHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHH---HHHHHHHHHccCHHHHHHHHHHHHHhCCCC---HHHHHH
Q 017264 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELF---ADRAQASIKLQNFTEAVADANRAIELEPSM---SKAYWR 75 (374)
Q Consensus 2 a~~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~---~~ra~~~~~l~~~~~Al~~~~~al~l~p~~---~~a~~~ 75 (374)
++.++..|..++..|+|++|+..|.+++...|....+. +.+|.+|+++++|.+|+..+++.+.+.|++ ..++|.
T Consensus 32 ~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~ 111 (243)
T PRK10866 32 PSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYM 111 (243)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHH
Confidence 34678899999999999999999999999999986544 889999999999999999999999999865 568999
Q ss_pred HHHHHHHhcC------------------HHHHHHHHHHHHhcCCCCh---hHHHHHHHHHHHHHhh
Q 017264 76 KATACMKLEE------------------YETAKVALEKGASLAPGDS---RFTNLIKECEERIAEE 120 (374)
Q Consensus 76 lg~~~~~lg~------------------~~eA~~~~~~a~~l~p~~~---~~~~~~~~~~~~l~~~ 120 (374)
+|.+++.+++ ...|+..|+..++..|+.. .+...+..|..+|...
T Consensus 112 ~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~ 177 (243)
T PRK10866 112 RGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKY 177 (243)
T ss_pred HHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHH
Confidence 9998766541 2578899999999999875 3455555565555543
No 96
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.80 E-value=4.6e-08 Score=82.83 Aligned_cols=92 Identities=11% Similarity=0.103 Sum_probs=85.7
Q ss_pred HHhC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChhHH
Q 017264 29 IEIS-PNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFT 107 (374)
Q Consensus 29 L~~~-p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~a~~l~p~~~~~~ 107 (374)
.... ++..+.++.+|..++..|++++|...|+.++.++|.+...|++||.++-.+|+|.+|+.+|.++..++|+++...
T Consensus 27 ~~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~ 106 (157)
T PRK15363 27 LDDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAP 106 (157)
T ss_pred HCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHH
Confidence 3445 677888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhh
Q 017264 108 NLIKECEERIAEE 120 (374)
Q Consensus 108 ~~~~~~~~~l~~~ 120 (374)
...+.|.-.+++.
T Consensus 107 ~~ag~c~L~lG~~ 119 (157)
T PRK15363 107 WAAAECYLACDNV 119 (157)
T ss_pred HHHHHHHHHcCCH
Confidence 9999998877665
No 97
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=98.79 E-value=8.6e-08 Score=106.94 Aligned_cols=110 Identities=15% Similarity=0.201 Sum_probs=78.6
Q ss_pred HHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH--------
Q 017264 7 KKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKAT-------- 78 (374)
Q Consensus 7 ~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~-------- 78 (374)
..|..++..|++++|+.+|.+++.++|.+..+++.+|.+|..+|++++|+..|++++.++|.+..++..++.
T Consensus 356 ~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~ 435 (1157)
T PRK11447 356 QQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPE 435 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHH
Confidence 456677777778888888888888777777777777777777778888888777777777776655544333
Q ss_pred ----------------------------------HHHHhcCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Q 017264 79 ----------------------------------ACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEER 116 (374)
Q Consensus 79 ----------------------------------~~~~lg~~~eA~~~~~~a~~l~p~~~~~~~~~~~~~~~ 116 (374)
++...|++++|+.+|+++++++|++..+...++.+...
T Consensus 436 ~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~ 507 (1157)
T PRK11447 436 KALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQ 507 (1157)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 33456777777777777777777777666555555443
No 98
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.79 E-value=4.2e-08 Score=72.50 Aligned_cols=66 Identities=29% Similarity=0.476 Sum_probs=37.3
Q ss_pred HHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHH
Q 017264 10 KEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWR 75 (374)
Q Consensus 10 ~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~ 75 (374)
..++..++|+.|+..+++++..+|+++.++..+|.||.++|++.+|+.++++++.+.|+...+...
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~ 68 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARAL 68 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHH
Confidence 345555555555555555555555555555555555555555555555555555555555544433
No 99
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.79 E-value=1.7e-07 Score=87.64 Aligned_cols=117 Identities=17% Similarity=0.173 Sum_probs=107.5
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Q 017264 4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKL 83 (374)
Q Consensus 4 ~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~l 83 (374)
.+..+...++-.||+..||.+.+..|+..|-++.++..||.||...|....||.++..+-.|..++.+.+|.++.++|..
T Consensus 157 ~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~v 236 (504)
T KOG0624|consen 157 VLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTV 236 (504)
T ss_pred HHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhh
Confidence 45678888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhh
Q 017264 84 EEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE 120 (374)
Q Consensus 84 g~~~eA~~~~~~a~~l~p~~~~~~~~~~~~~~~l~~~ 120 (374)
|+...++...+.|++++|++..+...+.++.+..+..
T Consensus 237 gd~~~sL~~iRECLKldpdHK~Cf~~YKklkKv~K~l 273 (504)
T KOG0624|consen 237 GDAENSLKEIRECLKLDPDHKLCFPFYKKLKKVVKSL 273 (504)
T ss_pred hhHHHHHHHHHHHHccCcchhhHHHHHHHHHHHHHHH
Confidence 9999999999999999999998777766665544443
No 100
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=98.79 E-value=9.9e-08 Score=106.43 Aligned_cols=109 Identities=17% Similarity=0.224 Sum_probs=63.4
Q ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHH--------------HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH
Q 017264 5 LEKKAKEAFIDDYFELAYDLYSQAIEISPNSAE--------------LFADRAQASIKLQNFTEAVADANRAIELEPSMS 70 (374)
Q Consensus 5 l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~--------------~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~ 70 (374)
+...|..++..|++++|+.+|.++++.+|.+.. .+..+|.++.+.|++++|+..|++++.++|.+.
T Consensus 306 ~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~ 385 (1157)
T PRK11447 306 LGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNTDS 385 (1157)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH
Confidence 344455555555555555555555555444321 112234444455555555555555555555566
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChhHHHHHHHH
Q 017264 71 KAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKEC 113 (374)
Q Consensus 71 ~a~~~lg~~~~~lg~~~eA~~~~~~a~~l~p~~~~~~~~~~~~ 113 (374)
.+++.+|.++..+|++++|+.+|+++++++|++......+..+
T Consensus 386 ~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l 428 (1157)
T PRK11447 386 YAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANL 428 (1157)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 6677777788888888888888888888877777655544444
No 101
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=98.79 E-value=9.9e-08 Score=102.00 Aligned_cols=114 Identities=16% Similarity=0.186 Sum_probs=81.3
Q ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc
Q 017264 5 LEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLE 84 (374)
Q Consensus 5 l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~lg 84 (374)
+...|..+...|++++|+.+|.+++...|+++.++..+|.++..+|+ .+|+..+++++.+.|+++..+..+|.+++.+|
T Consensus 773 ~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 851 (899)
T TIGR02917 773 RTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKG 851 (899)
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcC
Confidence 45566667777777777777777777777777777777777777777 66777777777777777777777777777777
Q ss_pred CHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHh
Q 017264 85 EYETAKVALEKGASLAPGDSRFTNLIKECEERIAE 119 (374)
Q Consensus 85 ~~~eA~~~~~~a~~l~p~~~~~~~~~~~~~~~l~~ 119 (374)
++++|+..|+++++++|.+..+...+..+..+.++
T Consensus 852 ~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~ 886 (899)
T TIGR02917 852 EADRALPLLRKAVNIAPEAAAIRYHLALALLATGR 886 (899)
T ss_pred CHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCC
Confidence 77777777777777777777666666665554433
No 102
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.78 E-value=3e-08 Score=73.31 Aligned_cols=71 Identities=27% Similarity=0.418 Sum_probs=65.6
Q ss_pred HHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChhHHHHHHHH
Q 017264 43 AQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKEC 113 (374)
Q Consensus 43 a~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~a~~l~p~~~~~~~~~~~~ 113 (374)
..+|.+.++|++|+..+++++.++|.++..++.+|.+++.+|+|.+|+.+|+++++..|++.......+++
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a~l 72 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRAML 72 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHHhc
Confidence 56788999999999999999999999999999999999999999999999999999999998876665543
No 103
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=98.77 E-value=1.5e-07 Score=100.55 Aligned_cols=109 Identities=17% Similarity=0.066 Sum_probs=102.1
Q ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc
Q 017264 5 LEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLE 84 (374)
Q Consensus 5 l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~lg 84 (374)
+...|..+...|++++|+..|.+++...|.+..+++.+|.++..+|++++|+..+++++.++|++..+++.+|.++..+|
T Consensus 362 ~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~ 441 (765)
T PRK10049 362 QSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQ 441 (765)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhC
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhcCCCChhHHHHHHHH
Q 017264 85 EYETAKVALEKGASLAPGDSRFTNLIKEC 113 (374)
Q Consensus 85 ~~~eA~~~~~~a~~l~p~~~~~~~~~~~~ 113 (374)
++++|...++.++...|+++.+...-...
T Consensus 442 ~~~~A~~~~~~ll~~~Pd~~~~~~~~~~~ 470 (765)
T PRK10049 442 EWRQMDVLTDDVVAREPQDPGVQRLARAR 470 (765)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 99999999999999999999765544433
No 104
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=98.76 E-value=1.9e-07 Score=91.39 Aligned_cols=98 Identities=15% Similarity=0.192 Sum_probs=63.2
Q ss_pred HHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHhcC
Q 017264 7 KKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSM-SKAYWRKATACMKLEE 85 (374)
Q Consensus 7 ~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~-~~a~~~lg~~~~~lg~ 85 (374)
..|..++..|++++|+.+|.++++.+|.+..+++.+|.+|.++|++++|+..+++++..+|.+ ..++..++.+|...|+
T Consensus 185 ~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~ 264 (389)
T PRK11788 185 ELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGD 264 (389)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCC
Confidence 455556666666666666666666666666666666666666666666666666666666554 3445566666666666
Q ss_pred HHHHHHHHHHHHhcCCCCh
Q 017264 86 YETAKVALEKGASLAPGDS 104 (374)
Q Consensus 86 ~~eA~~~~~~a~~l~p~~~ 104 (374)
+++|+..|+++++..|+..
T Consensus 265 ~~~A~~~l~~~~~~~p~~~ 283 (389)
T PRK11788 265 EAEGLEFLRRALEEYPGAD 283 (389)
T ss_pred HHHHHHHHHHHHHhCCCch
Confidence 6666666666666666543
No 105
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.76 E-value=2.4e-07 Score=75.61 Aligned_cols=95 Identities=21% Similarity=0.044 Sum_probs=86.4
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC---CHHHHHHH
Q 017264 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNS---AELFADRAQASIKLQNFTEAVADANRAIELEPS---MSKAYWRK 76 (374)
Q Consensus 3 ~~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~---~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~---~~~a~~~l 76 (374)
+.+++.|..+-..|+.++|+.+|.+++...... ..+++.+|.+|..+|++++|+..++.++...|+ +......+
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~ 81 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFL 81 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHH
Confidence 467899999999999999999999999975444 578999999999999999999999999999888 78888889
Q ss_pred HHHHHHhcCHHHHHHHHHHHH
Q 017264 77 ATACMKLEEYETAKVALEKGA 97 (374)
Q Consensus 77 g~~~~~lg~~~eA~~~~~~a~ 97 (374)
+.+++++|++++|+..+-.++
T Consensus 82 Al~L~~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 82 ALALYNLGRPKEALEWLLEAL 102 (120)
T ss_pred HHHHHHCCCHHHHHHHHHHHH
Confidence 999999999999999887765
No 106
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.76 E-value=2.8e-08 Score=95.58 Aligned_cols=117 Identities=18% Similarity=0.194 Sum_probs=107.4
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 017264 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK 82 (374)
Q Consensus 3 ~~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~ 82 (374)
.++.++|+..|.+|+|+.|++.|.+||..+....++++++|..+..+|++++|+.+|-++-.+--++.++++.++.+|..
T Consensus 491 ~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~ 570 (840)
T KOG2003|consen 491 AALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYEL 570 (840)
T ss_pred HHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 45678999999999999999999999999999999999999999999999999999988877777899999999999999
Q ss_pred hcCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHh
Q 017264 83 LEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAE 119 (374)
Q Consensus 83 lg~~~eA~~~~~~a~~l~p~~~~~~~~~~~~~~~l~~ 119 (374)
+.+..+|++.|-++..+-|+++.+..-++.+..+-+.
T Consensus 571 led~aqaie~~~q~~slip~dp~ilskl~dlydqegd 607 (840)
T KOG2003|consen 571 LEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGD 607 (840)
T ss_pred hhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccc
Confidence 9999999999999999999999998888887765433
No 107
>PLN02789 farnesyltranstransferase
Probab=98.74 E-value=2.3e-07 Score=88.71 Aligned_cols=110 Identities=15% Similarity=0.052 Sum_probs=99.8
Q ss_pred HHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCH--H
Q 017264 11 EAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQ-NFTEAVADANRAIELEPSMSKAYWRKATACMKLEEY--E 87 (374)
Q Consensus 11 ~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~-~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~lg~~--~ 87 (374)
.+...+.+++|+.+++++|.++|.+..++..|+.++..++ .+.+++..++++++.+|++..+|+.++.++..+|+. .
T Consensus 46 ~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~ 125 (320)
T PLN02789 46 VYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAAN 125 (320)
T ss_pred HHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhH
Confidence 3556788999999999999999999999999999999998 689999999999999999999999999999999874 7
Q ss_pred HHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhh
Q 017264 88 TAKVALEKGASLAPGDSRFTNLIKECEERIAEE 120 (374)
Q Consensus 88 eA~~~~~~a~~l~p~~~~~~~~~~~~~~~l~~~ 120 (374)
+++.++.++++++|.|-.+....+.+...++..
T Consensus 126 ~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~ 158 (320)
T PLN02789 126 KELEFTRKILSLDAKNYHAWSHRQWVLRTLGGW 158 (320)
T ss_pred HHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhH
Confidence 889999999999999998888888777776554
No 108
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=98.74 E-value=1.9e-07 Score=91.42 Aligned_cols=114 Identities=14% Similarity=0.179 Sum_probs=80.8
Q ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHH
Q 017264 5 LEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSM-----SKAYWRKATA 79 (374)
Q Consensus 5 l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~-----~~a~~~lg~~ 79 (374)
+...|..++..|+|+.|+..|.+++..+|.+..++..++.+|.+.|++++|+..+.+++...|.. ...++.+|.+
T Consensus 110 ~~~La~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~ 189 (389)
T PRK11788 110 LQELGQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQ 189 (389)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHH
Confidence 45567777777777777777777777777777777777777777777777777777777776653 2245567777
Q ss_pred HHHhcCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHH
Q 017264 80 CMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIA 118 (374)
Q Consensus 80 ~~~lg~~~eA~~~~~~a~~l~p~~~~~~~~~~~~~~~l~ 118 (374)
++..|++++|+..|+++++.+|++......++.+....+
T Consensus 190 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 228 (389)
T PRK11788 190 ALARGDLDAARALLKKALAADPQCVRASILLGDLALAQG 228 (389)
T ss_pred HHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCC
Confidence 777777777777777777777776655555555544433
No 109
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.73 E-value=1e-07 Score=97.01 Aligned_cols=103 Identities=15% Similarity=0.150 Sum_probs=95.3
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHH--HHHHHHHhCCCCHHHHHHHHHHH
Q 017264 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVA--DANRAIELEPSMSKAYWRKATAC 80 (374)
Q Consensus 3 ~~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~--~~~~al~l~p~~~~a~~~lg~~~ 80 (374)
..++..|..+...|.+.+|.+.|..|+.++|+++.....+|.||.+.|+-.-|.. .+..|++++|.+.++||.+|.++
T Consensus 685 ~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~ 764 (799)
T KOG4162|consen 685 SVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVF 764 (799)
T ss_pred HHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Confidence 4578899999999999999999999999999999999999999999997776666 99999999999999999999999
Q ss_pred HHhcCHHHHHHHHHHHHhcCCCChh
Q 017264 81 MKLEEYETAKVALEKGASLAPGDSR 105 (374)
Q Consensus 81 ~~lg~~~eA~~~~~~a~~l~p~~~~ 105 (374)
..+|+.++|.+||+.++++.+.++.
T Consensus 765 k~~Gd~~~Aaecf~aa~qLe~S~PV 789 (799)
T KOG4162|consen 765 KKLGDSKQAAECFQAALQLEESNPV 789 (799)
T ss_pred HHccchHHHHHHHHHHHhhccCCCc
Confidence 9999999999999999999988773
No 110
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.72 E-value=4.1e-07 Score=81.89 Aligned_cols=109 Identities=16% Similarity=0.136 Sum_probs=87.0
Q ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc
Q 017264 5 LEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLE 84 (374)
Q Consensus 5 l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~lg 84 (374)
..-.|..+-..|+|++|+++|+..|.-+|.+..++.+.-.+.-.+|+--+||+.+...+...+++.++|..++.+|+..|
T Consensus 89 ~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~ 168 (289)
T KOG3060|consen 89 GKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEG 168 (289)
T ss_pred HHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHh
Confidence 35578888999999999999999999999997777766666666777778888888888888888888888888888888
Q ss_pred CHHHHHHHHHHHHhcCCCChhHHHHHHHH
Q 017264 85 EYETAKVALEKGASLAPGDSRFTNLIKEC 113 (374)
Q Consensus 85 ~~~eA~~~~~~a~~l~p~~~~~~~~~~~~ 113 (374)
+|+.|..||+.++-++|-++.+...++.+
T Consensus 169 ~f~kA~fClEE~ll~~P~n~l~f~rlae~ 197 (289)
T KOG3060|consen 169 DFEKAAFCLEELLLIQPFNPLYFQRLAEV 197 (289)
T ss_pred HHHHHHHHHHHHHHcCCCcHHHHHHHHHH
Confidence 88888888888888888777655554443
No 111
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=98.72 E-value=7e-09 Score=96.76 Aligned_cols=111 Identities=32% Similarity=0.425 Sum_probs=100.8
Q ss_pred hHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 017264 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACM 81 (374)
Q Consensus 2 a~~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~ 81 (374)
|.+..-++..++..|.++.||++|+.+|.++|.++.+|..|+.+++++++.-.|+.+|..|+.++|+....|-.+|.+..
T Consensus 114 a~e~k~~A~eAln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~r 193 (377)
T KOG1308|consen 114 ANDKKVQASEALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAER 193 (377)
T ss_pred HHHHHHHHHHHhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHH
Confidence 45677889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCHHHHHHHHHHHHhcCCCChhHHHHHHHH
Q 017264 82 KLEEYETAKVALEKGASLAPGDSRFTNLIKEC 113 (374)
Q Consensus 82 ~lg~~~eA~~~~~~a~~l~p~~~~~~~~~~~~ 113 (374)
.+|++.+|..+|..+.+++-+.. .-.|+..+
T Consensus 194 llg~~e~aa~dl~~a~kld~dE~-~~a~lKeV 224 (377)
T KOG1308|consen 194 LLGNWEEAAHDLALACKLDYDEA-NSATLKEV 224 (377)
T ss_pred HhhchHHHHHHHHHHHhccccHH-HHHHHHHh
Confidence 99999999999999999987533 34444443
No 112
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.69 E-value=6.5e-08 Score=70.43 Aligned_cols=67 Identities=21% Similarity=0.354 Sum_probs=61.0
Q ss_pred HHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChhHHHHHHH
Q 017264 46 SIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKE 112 (374)
Q Consensus 46 ~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~a~~l~p~~~~~~~~~~~ 112 (374)
+++.|+|++|+..|++++..+|++..+++.+|.+|+..|++++|...|.+++..+|+++.+...+++
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~ 67 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQ 67 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred ChhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence 3578999999999999999999999999999999999999999999999999999998877766654
No 113
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.69 E-value=2.3e-07 Score=78.43 Aligned_cols=92 Identities=23% Similarity=0.177 Sum_probs=53.2
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---HHHHHHHH
Q 017264 4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNS---AELFADRAQASIKLQNFTEAVADANRAIELEPSM---SKAYWRKA 77 (374)
Q Consensus 4 ~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~---~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~---~~a~~~lg 77 (374)
..+..+...+..+++..+...+...+...|+. ..+.+.+|.+++..|++++|+..|+.++...++. ..+.+++|
T Consensus 13 ~~y~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA 92 (145)
T PF09976_consen 13 ALYEQALQALQAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLA 92 (145)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHH
Confidence 34445555555666666666666666666655 3455556666666666666666666666555432 33555666
Q ss_pred HHHHHhcCHHHHHHHHHH
Q 017264 78 TACMKLEEYETAKVALEK 95 (374)
Q Consensus 78 ~~~~~lg~~~eA~~~~~~ 95 (374)
.+++..|+|++|+..++.
T Consensus 93 ~~~~~~~~~d~Al~~L~~ 110 (145)
T PF09976_consen 93 RILLQQGQYDEALATLQQ 110 (145)
T ss_pred HHHHHcCCHHHHHHHHHh
Confidence 666666666666666544
No 114
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=98.68 E-value=2.7e-07 Score=79.33 Aligned_cols=98 Identities=19% Similarity=0.318 Sum_probs=81.7
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc----------cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcC--
Q 017264 18 FELAYDLYSQAIEISPNSAELFADRAQASIKL----------QNFTEAVADANRAIELEPSMSKAYWRKATACMKLEE-- 85 (374)
Q Consensus 18 y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l----------~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~lg~-- 85 (374)
|+.|.+.|...+..+|.+++.+++-|.+++.+ ..+++|+.=|+.||.++|+..++++.+|.+|..++.
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~ 86 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLT 86 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhc
Confidence 67899999999999999999999999999887 346778889999999999999999999999987665
Q ss_pred ---------HHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Q 017264 86 ---------YETAKVALEKGASLAPGDSRFTNLIKECEE 115 (374)
Q Consensus 86 ---------~~eA~~~~~~a~~l~p~~~~~~~~~~~~~~ 115 (374)
|++|..+|+++...+|++...+.-+..+.+
T Consensus 87 ~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~~~k 125 (186)
T PF06552_consen 87 PDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEMAAK 125 (186)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHT
T ss_pred CChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHh
Confidence 789999999999999999988888877754
No 115
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.67 E-value=1.7e-07 Score=92.58 Aligned_cols=112 Identities=19% Similarity=0.217 Sum_probs=97.2
Q ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHhCCC-------CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 017264 5 LEKKAKEAFIDDYFELAYDLYSQAIEISPN-------SAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77 (374)
Q Consensus 5 l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~-------~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg 77 (374)
+...|..+|..+.|.+|+.+|..+|..-+. -...+.++|.+|.+++.|++|+..++++|.+.|.++.+|-.+|
T Consensus 417 ~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig 496 (611)
T KOG1173|consen 417 LHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIG 496 (611)
T ss_pred hhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHH
Confidence 456788888899999999999988843211 2346899999999999999999999999999999999999999
Q ss_pred HHHHHhcCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Q 017264 78 TACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEER 116 (374)
Q Consensus 78 ~~~~~lg~~~eA~~~~~~a~~l~p~~~~~~~~~~~~~~~ 116 (374)
.+|..+|+++.|+..|.+++-+.|++..+...+..+-..
T Consensus 497 ~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~aie~ 535 (611)
T KOG1173|consen 497 YIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLAIED 535 (611)
T ss_pred HHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHHHHh
Confidence 999999999999999999999999998877777765443
No 116
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.67 E-value=2.1e-07 Score=90.66 Aligned_cols=82 Identities=21% Similarity=0.222 Sum_probs=77.0
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 017264 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK 82 (374)
Q Consensus 3 ~~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~ 82 (374)
..+..+|.+++..|+|++|+..|.++|.++|.++.+|+++|.+|+.+|+|++|+.+|++++.++|++..++..++.|...
T Consensus 37 ~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~k 116 (356)
T PLN03088 37 ELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTAKAALEKGASLAPGDSRFTKLIKECDEK 116 (356)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999888888766
Q ss_pred hc
Q 017264 83 LE 84 (374)
Q Consensus 83 lg 84 (374)
+.
T Consensus 117 l~ 118 (356)
T PLN03088 117 IA 118 (356)
T ss_pred HH
Confidence 63
No 117
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.66 E-value=1.1e-07 Score=92.82 Aligned_cols=63 Identities=17% Similarity=0.173 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHH---HHHHHHHHHHccCHHHHHHHHHHHHHh
Q 017264 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAEL---FADRAQASIKLQNFTEAVADANRAIEL 65 (374)
Q Consensus 3 ~~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~---~~~ra~~~~~l~~~~~Al~~~~~al~l 65 (374)
..+.+.|..|+..|+|++|+..|++||.++|++..+ |+++|.||..+|++++|+.++++|+++
T Consensus 76 ~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 76 EDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 445566666666666666666666666666665533 666666666666666666666666665
No 118
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.64 E-value=2.6e-07 Score=80.12 Aligned_cols=112 Identities=14% Similarity=0.095 Sum_probs=95.9
Q ss_pred HHHHHHHhccCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHH
Q 017264 7 KKAKEAFIDDYFELAYDLYSQAIEISPNS--AELFADRAQASIKLQNFTEAVADANRAIELEPS---MSKAYWRKATACM 81 (374)
Q Consensus 7 ~~g~~~~~~~~y~~Al~~y~~aL~~~p~~--~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~---~~~a~~~lg~~~~ 81 (374)
.+.+.+|..++|..+...+...++..... ..+++.+|.++..+|++++|+..|.+++.+.++ .+.+++++|.++.
T Consensus 4 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~ 83 (168)
T CHL00033 4 SQRNDNFIDKTFTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHT 83 (168)
T ss_pred ccccccccccccccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHH
Confidence 35677888899999999998877776665 677899999999999999999999999999776 3458999999999
Q ss_pred HhcCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHH
Q 017264 82 KLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIA 118 (374)
Q Consensus 82 ~lg~~~eA~~~~~~a~~l~p~~~~~~~~~~~~~~~l~ 118 (374)
.+|++++|+.+|++++.+.|........++.+...++
T Consensus 84 ~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~~~~~ 120 (168)
T CHL00033 84 SNGEHTKALEYYFQALERNPFLPQALNNMAVICHYRG 120 (168)
T ss_pred HcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhh
Confidence 9999999999999999999998887777776666433
No 119
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.63 E-value=4.2e-07 Score=82.25 Aligned_cols=110 Identities=22% Similarity=0.278 Sum_probs=102.1
Q ss_pred HHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcC
Q 017264 6 EKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEE 85 (374)
Q Consensus 6 ~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~lg~ 85 (374)
...+..++..|+-+.++....+++..+|.+..++...|..+++.|+|.+|+..+.++..+.|+++++|.-+|.+|-++|+
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr 149 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGR 149 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHccC
Confidence 45778889999999999999999999999999998899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Q 017264 86 YETAKVALEKGASLAPGDSRFTNLIKECEE 115 (374)
Q Consensus 86 ~~eA~~~~~~a~~l~p~~~~~~~~~~~~~~ 115 (374)
+++|...|.+++++.|+++.+..++.....
T Consensus 150 ~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~ 179 (257)
T COG5010 150 FDEARRAYRQALELAPNEPSIANNLGMSLL 179 (257)
T ss_pred hhHHHHHHHHHHHhccCCchhhhhHHHHHH
Confidence 999999999999999999988888776554
No 120
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.60 E-value=6.2e-07 Score=87.67 Aligned_cols=69 Identities=23% Similarity=0.215 Sum_probs=66.3
Q ss_pred hCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHH---HHHHHHHHHHhcCHHHHHHHHHHHHhc
Q 017264 31 ISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKA---YWRKATACMKLEEYETAKVALEKGASL 99 (374)
Q Consensus 31 ~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a---~~~lg~~~~~lg~~~eA~~~~~~a~~l 99 (374)
.+|+++.+++++|.+|+++|+|++|+..|++||+++|++..+ |+++|.+|..+|++++|+.+|++++++
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 479999999999999999999999999999999999999865 999999999999999999999999997
No 121
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.58 E-value=5.8e-07 Score=86.05 Aligned_cols=94 Identities=23% Similarity=0.233 Sum_probs=83.6
Q ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc
Q 017264 5 LEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLE 84 (374)
Q Consensus 5 l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~lg 84 (374)
+.+.+.++.+.++|..|+..++++|..+|+|..++++||.||..+++|+.|+.+|.+|++++|.+..+...+..+.....
T Consensus 260 ~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~ 339 (397)
T KOG0543|consen 260 HLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIR 339 (397)
T ss_pred hhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999888888877766
Q ss_pred CHHHH-HHHHHHHHh
Q 017264 85 EYETA-KVALEKGAS 98 (374)
Q Consensus 85 ~~~eA-~~~~~~a~~ 98 (374)
++.+. ...|...+.
T Consensus 340 ~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 340 EYEEKEKKMYANMFA 354 (397)
T ss_pred HHHHHHHHHHHHHhh
Confidence 66544 455655543
No 122
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=98.57 E-value=2.7e-07 Score=81.30 Aligned_cols=115 Identities=21% Similarity=0.143 Sum_probs=103.1
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 017264 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK 82 (374)
Q Consensus 3 ~~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~ 82 (374)
.-++.+|+.+-..|-+.-|.--|+++|.+.|.-+.++..+|.-+...|+|+.|.+.|+..++++|..--+++++|++++.
T Consensus 66 ~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY 145 (297)
T COG4785 66 QLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYY 145 (297)
T ss_pred HHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeee
Confidence 44677777777777788899999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Q 017264 83 LEEYETAKVALEKGASLAPGDSRFTNLIKECEERI 117 (374)
Q Consensus 83 lg~~~eA~~~~~~a~~l~p~~~~~~~~~~~~~~~l 117 (374)
-|+|.-|...|.+..+-+|+++--..|+-..+.++
T Consensus 146 ~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~E~k~ 180 (297)
T COG4785 146 GGRYKLAQDDLLAFYQDDPNDPFRSLWLYLNEQKL 180 (297)
T ss_pred cCchHhhHHHHHHHHhcCCCChHHHHHHHHHHhhC
Confidence 99999999999999999999997666665554443
No 123
>PRK14574 hmsH outer membrane protein; Provisional
Probab=98.57 E-value=8.5e-07 Score=94.58 Aligned_cols=112 Identities=11% Similarity=-0.039 Sum_probs=76.1
Q ss_pred hHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 017264 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACM 81 (374)
Q Consensus 2 a~~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~ 81 (374)
++..+.++...++.|+|+.|+..|.++++.+|.++.+...++.++..+|++++|+.++++++.-.|.....+..+|.++.
T Consensus 34 ~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~ 113 (822)
T PRK14574 34 ADTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYR 113 (822)
T ss_pred hhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHH
Confidence 34567888999999999999999999999999985333366666666677777777777777222233333333355667
Q ss_pred HhcCHHHHHHHHHHHHhcCCCChhHHHHHHHH
Q 017264 82 KLEEYETAKVALEKGASLAPGDSRFTNLIKEC 113 (374)
Q Consensus 82 ~lg~~~eA~~~~~~a~~l~p~~~~~~~~~~~~ 113 (374)
.+|+|++|+..|+++++.+|+++.+...+..+
T Consensus 114 ~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~ 145 (822)
T PRK14574 114 NEKRWDQALALWQSSLKKDPTNPDLISGMIMT 145 (822)
T ss_pred HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Confidence 77777777777777777777776655544443
No 124
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.56 E-value=6e-07 Score=89.95 Aligned_cols=117 Identities=10% Similarity=0.073 Sum_probs=112.1
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Q 017264 4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKL 83 (374)
Q Consensus 4 ~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~l 83 (374)
.+|.++...|..++|...+...+.+|+..|.+.+.+.-.|..+..+|+-++|....+.+++.++...-+|..+|+++...
T Consensus 9 ~lF~~~lk~yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~d 88 (700)
T KOG1156|consen 9 ALFRRALKCYETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSD 88 (700)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhh
Confidence 57889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhh
Q 017264 84 EEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE 120 (374)
Q Consensus 84 g~~~eA~~~~~~a~~l~p~~~~~~~~~~~~~~~l~~~ 120 (374)
++|++|+.||+.|+.++|+|..+.+-++-++.+++..
T Consensus 89 K~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~ 125 (700)
T KOG1156|consen 89 KKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDY 125 (700)
T ss_pred hhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999998888877765
No 125
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=98.56 E-value=4e-07 Score=85.48 Aligned_cols=115 Identities=20% Similarity=0.245 Sum_probs=91.5
Q ss_pred HHHHHHHHhccCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Q 017264 6 EKKAKEAFIDDYFELAYDLYSQAIEIS--PNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKL 83 (374)
Q Consensus 6 ~~~g~~~~~~~~y~~Al~~y~~aL~~~--p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~l 83 (374)
......++..++++++...+.++.... +.++.++..+|.++.+.|++++|+.++++|+.++|++..++..++.++...
T Consensus 114 ~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~ 193 (280)
T PF13429_consen 114 LSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLIDM 193 (280)
T ss_dssp ----H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTT
T ss_pred hHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHC
Confidence 345567788999999999999977654 677889999999999999999999999999999999999999999999999
Q ss_pred cCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhh
Q 017264 84 EEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE 120 (374)
Q Consensus 84 g~~~eA~~~~~~a~~l~p~~~~~~~~~~~~~~~l~~~ 120 (374)
|+++++...+.......|.++.+...++.+...+++.
T Consensus 194 ~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~ 230 (280)
T PF13429_consen 194 GDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRY 230 (280)
T ss_dssp CHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-H
T ss_pred CChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccc
Confidence 9999999999988888888888888888887776664
No 126
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.52 E-value=2.1e-06 Score=87.39 Aligned_cols=110 Identities=16% Similarity=0.127 Sum_probs=63.7
Q ss_pred HHHHHHHHHHhccC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc--------CHHHHHHHHHHHHHh--CCCCH
Q 017264 4 DLEKKAKEAFIDDY---FELAYDLYSQAIEISPNSAELFADRAQASIKLQ--------NFTEAVADANRAIEL--EPSMS 70 (374)
Q Consensus 4 ~l~~~g~~~~~~~~---y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~--------~~~~Al~~~~~al~l--~p~~~ 70 (374)
.++.+|..++..++ +..|+.+|.+|++++|+++.++..++.||.... +...+.+.+.+++.+ ++..+
T Consensus 341 ~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~~~ 420 (517)
T PRK10153 341 TLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNVLP 420 (517)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcCCh
Confidence 46677777766555 788999999999999998777777776664431 122333333343332 34444
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChhHHHHHHHHH
Q 017264 71 KAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECE 114 (374)
Q Consensus 71 ~a~~~lg~~~~~lg~~~eA~~~~~~a~~l~p~~~~~~~~~~~~~ 114 (374)
.+|..+|..+...|++++|...|++++.++|+ ......++++.
T Consensus 421 ~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps-~~a~~~lG~~~ 463 (517)
T PRK10153 421 RIYEILAVQALVKGKTDEAYQAINKAIDLEMS-WLNYVLLGKVY 463 (517)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHH
Confidence 55555555555555555555555555555552 33344444333
No 127
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.51 E-value=4.9e-07 Score=83.37 Aligned_cols=93 Identities=20% Similarity=0.206 Sum_probs=81.6
Q ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc
Q 017264 5 LEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLE 84 (374)
Q Consensus 5 l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~lg 84 (374)
+-++|.+|.+.|.|+.|++-+..||.++|+...+|..+|.+|+.+|+|++|++.|.+||.++|++....-.|..+-..++
T Consensus 118 ycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~ 197 (304)
T KOG0553|consen 118 YCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEAIEAYKKALELDPDNESYKSNLKIAEQKLN 197 (304)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhc
Confidence 56899999999999999999999999999999999999999999999999999999999999999988888877777776
Q ss_pred CHH---HHHHHHHHHH
Q 017264 85 EYE---TAKVALEKGA 97 (374)
Q Consensus 85 ~~~---eA~~~~~~a~ 97 (374)
+.. .+...++.+.
T Consensus 198 e~~~~~~~~~~~d~~~ 213 (304)
T KOG0553|consen 198 EPKSSAQASGSFDMAG 213 (304)
T ss_pred CCCcccccccchhhhh
Confidence 665 4444444443
No 128
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.49 E-value=1.9e-06 Score=64.39 Aligned_cols=82 Identities=26% Similarity=0.369 Sum_probs=73.4
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Q 017264 38 LFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERI 117 (374)
Q Consensus 38 ~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~a~~l~p~~~~~~~~~~~~~~~l 117 (374)
+++.+|.++...|++.+|+..+.+++...|.+..+++.+|.++...+++++|+.+|+.++.+.|.+......++.+....
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence 57889999999999999999999999999999999999999999999999999999999999999887666666665554
Q ss_pred Hh
Q 017264 118 AE 119 (374)
Q Consensus 118 ~~ 119 (374)
+.
T Consensus 82 ~~ 83 (100)
T cd00189 82 GK 83 (100)
T ss_pred Hh
Confidence 44
No 129
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.49 E-value=2.7e-06 Score=83.08 Aligned_cols=110 Identities=22% Similarity=0.146 Sum_probs=97.2
Q ss_pred HHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcC
Q 017264 6 EKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEE 85 (374)
Q Consensus 6 ~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~lg~ 85 (374)
-..+..++..+++.+|++.+.+++.++|+.+.+.+++|.+|++.|++.+|+..+...+..+|+++..|..+|++|..+|+
T Consensus 344 ~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~ 423 (484)
T COG4783 344 ELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGN 423 (484)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCc
Confidence 35788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Q 017264 86 YETAKVALEKGASLAPGDSRFTNLIKECEE 115 (374)
Q Consensus 86 ~~eA~~~~~~a~~l~p~~~~~~~~~~~~~~ 115 (374)
-.+|...+.....+...-......+..+.+
T Consensus 424 ~~~a~~A~AE~~~~~G~~~~A~~~l~~A~~ 453 (484)
T COG4783 424 RAEALLARAEGYALAGRLEQAIIFLMRASQ 453 (484)
T ss_pred hHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 999988888888777765554444444433
No 130
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.48 E-value=5.2e-07 Score=86.21 Aligned_cols=119 Identities=18% Similarity=0.247 Sum_probs=100.5
Q ss_pred hHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCC------------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-
Q 017264 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNS------------AELFADRAQASIKLQNFTEAVADANRAIELEPS- 68 (374)
Q Consensus 2 a~~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~------------~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~- 68 (374)
++++.-+|.+++-..+.+.|+.+|+++|.++|++ ...+..+|.-.++.|+|..|-+.|..||.++|.
T Consensus 203 ~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n 282 (486)
T KOG0550|consen 203 AEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSN 282 (486)
T ss_pred hHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccc
Confidence 3467778888888899999999999999999887 345566777788889999999999999999996
Q ss_pred ---CHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhh
Q 017264 69 ---MSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE 120 (374)
Q Consensus 69 ---~~~a~~~lg~~~~~lg~~~eA~~~~~~a~~l~p~~~~~~~~~~~~~~~l~~~ 120 (374)
++..|+++|.+..++|+..+|+..+..++.+++.-.......+.|...|...
T Consensus 283 ~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~ 337 (486)
T KOG0550|consen 283 KKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKW 337 (486)
T ss_pred cchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHH
Confidence 4678899999999999999999999999999998877777777787777665
No 131
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.46 E-value=2.4e-06 Score=82.62 Aligned_cols=97 Identities=16% Similarity=0.137 Sum_probs=85.1
Q ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHH
Q 017264 5 LEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSM----SKAYWRKATAC 80 (374)
Q Consensus 5 l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~----~~a~~~lg~~~ 80 (374)
+...|..+...|+|++|+..|.+++.+.|+++.++..+|.+|+.+|++++|+..+.+++.+.|.. ...++.+|.++
T Consensus 117 ~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~ 196 (355)
T cd05804 117 LGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFY 196 (355)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHH
Confidence 34677889999999999999999999999999999999999999999999999999999987643 23566899999
Q ss_pred HHhcCHHHHHHHHHHHHhcCC
Q 017264 81 MKLEEYETAKVALEKGASLAP 101 (374)
Q Consensus 81 ~~lg~~~eA~~~~~~a~~l~p 101 (374)
..+|++++|+..|++++...|
T Consensus 197 ~~~G~~~~A~~~~~~~~~~~~ 217 (355)
T cd05804 197 LERGDYEAALAIYDTHIAPSA 217 (355)
T ss_pred HHCCCHHHHHHHHHHHhcccc
Confidence 999999999999999876665
No 132
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.45 E-value=5.7e-07 Score=91.22 Aligned_cols=111 Identities=19% Similarity=0.159 Sum_probs=99.2
Q ss_pred hHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 017264 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACM 81 (374)
Q Consensus 2 a~~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~ 81 (374)
+++.+..|...+.+++|.++..+++..+.++|-....|+.+|.|+.++++++.|..+|.+++.++|++..+|-+++-+|.
T Consensus 485 arA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi 564 (777)
T KOG1128|consen 485 ARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYI 564 (777)
T ss_pred HHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHH
Confidence 45556667777889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCHHHHHHHHHHHHhcCCCChhHHHHHHH
Q 017264 82 KLEEYETAKVALEKGASLAPGDSRFTNLIKE 112 (374)
Q Consensus 82 ~lg~~~eA~~~~~~a~~l~p~~~~~~~~~~~ 112 (374)
.+++-.+|..+++.+++.+-++-.+..+..-
T Consensus 565 ~~~~k~ra~~~l~EAlKcn~~~w~iWENyml 595 (777)
T KOG1128|consen 565 RLKKKKRAFRKLKEALKCNYQHWQIWENYML 595 (777)
T ss_pred HHhhhHHHHHHHHHHhhcCCCCCeeeechhh
Confidence 9999999999999999998766554444333
No 133
>PRK14574 hmsH outer membrane protein; Provisional
Probab=98.44 E-value=2.9e-06 Score=90.55 Aligned_cols=111 Identities=14% Similarity=0.137 Sum_probs=94.0
Q ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc
Q 017264 5 LEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLE 84 (374)
Q Consensus 5 l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~lg 84 (374)
+...|..+...|+|+.|+++|.++++.+|+++.++..++.+|..++++++|+..+.+++.++|.+... ..++.++..++
T Consensus 105 llalA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~-l~layL~~~~~ 183 (822)
T PRK14574 105 LASAARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNY-MTLSYLNRATD 183 (822)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHH-HHHHHHHHhcc
Confidence 34457788899999999999999999999999999999999999999999999999999999986554 55566666678
Q ss_pred CHHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Q 017264 85 EYETAKVALEKGASLAPGDSRFTNLIKECEER 116 (374)
Q Consensus 85 ~~~eA~~~~~~a~~l~p~~~~~~~~~~~~~~~ 116 (374)
++.+|+..|+++++++|++..+...+..+...
T Consensus 184 ~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~ 215 (822)
T PRK14574 184 RNYDALQASSEAVRLAPTSEEVLKNHLEILQR 215 (822)
T ss_pred hHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 88779999999999999999876666555444
No 134
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=98.43 E-value=2.2e-06 Score=89.41 Aligned_cols=114 Identities=16% Similarity=0.162 Sum_probs=102.2
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC-HHHHHHHHHH
Q 017264 4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNS---AELFADRAQASIKLQNFTEAVADANRAIELEPSM-SKAYWRKATA 79 (374)
Q Consensus 4 ~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~---~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~-~~a~~~lg~~ 79 (374)
.+...++.+|-.|+|..+..++..++...-+. ++.++.+|.+|..+|+|++|..+|-.+++.++++ .-.++.+|++
T Consensus 272 ~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm 351 (1018)
T KOG2002|consen 272 ALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQM 351 (1018)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHH
Confidence 46778999999999999999999999876444 4569999999999999999999999999999987 7889999999
Q ss_pred HHHhcCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Q 017264 80 CMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERI 117 (374)
Q Consensus 80 ~~~lg~~~eA~~~~~~a~~l~p~~~~~~~~~~~~~~~l 117 (374)
+...|++..|..||++.+...|++......++.+....
T Consensus 352 ~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~ 389 (1018)
T KOG2002|consen 352 YIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHS 389 (1018)
T ss_pred HHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhh
Confidence 99999999999999999999999999888887777665
No 135
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=98.43 E-value=6.5e-07 Score=87.76 Aligned_cols=109 Identities=26% Similarity=0.293 Sum_probs=97.4
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc---cCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 017264 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKL---QNFTEAVADANRAIELEPSMSKAYWRKATA 79 (374)
Q Consensus 3 ~~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l---~~~~~Al~~~~~al~l~p~~~~a~~~lg~~ 79 (374)
+..+..|+..+-......||.+|.+++...|....+|.+||.++++. |+...|+.|+..|++++|...++||+|+.+
T Consensus 375 e~~~~egnd~ly~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~a 454 (758)
T KOG1310|consen 375 EKFKTEGNDGLYESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARA 454 (758)
T ss_pred HHHHhhccchhhhHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHH
Confidence 45677888888889999999999999999999999999999999886 788899999999999999999999999999
Q ss_pred HHHhcCHHHHHHHHHHHHhcCCCChhHHHHHH
Q 017264 80 CMKLEEYETAKVALEKGASLAPGDSRFTNLIK 111 (374)
Q Consensus 80 ~~~lg~~~eA~~~~~~a~~l~p~~~~~~~~~~ 111 (374)
+..+++|.+|+.|...+....|.+........
T Consensus 455 L~el~r~~eal~~~~alq~~~Ptd~a~~~~v~ 486 (758)
T KOG1310|consen 455 LNELTRYLEALSCHWALQMSFPTDVARQNFVL 486 (758)
T ss_pred HHHHhhHHHhhhhHHHHhhcCchhhhhhhhhh
Confidence 99999999999999988888886665444433
No 136
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.43 E-value=3.2e-06 Score=82.76 Aligned_cols=88 Identities=24% Similarity=0.345 Sum_probs=45.1
Q ss_pred HHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHH
Q 017264 8 KAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYE 87 (374)
Q Consensus 8 ~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~ 87 (374)
.+..++..++..+|+..+.++|...|.+..++...|..+++.++++.|+..+.+|+.+.|...+.|+.|+.+|..+|+|+
T Consensus 206 LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e 285 (395)
T PF09295_consen 206 LARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFE 285 (395)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHH
Confidence 34444444445555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHHH
Q 017264 88 TAKVALEK 95 (374)
Q Consensus 88 eA~~~~~~ 95 (374)
.|+..+..
T Consensus 286 ~ALlaLNs 293 (395)
T PF09295_consen 286 NALLALNS 293 (395)
T ss_pred HHHHHHhc
Confidence 55544443
No 137
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.42 E-value=1.7e-06 Score=85.85 Aligned_cols=98 Identities=18% Similarity=0.150 Sum_probs=93.1
Q ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc
Q 017264 5 LEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLE 84 (374)
Q Consensus 5 l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~lg 84 (374)
-+..|..+++.|+..+|+-.|..|++.+|.++++|..||.++...++-..|+..+.+|++++|++-++++.||++|.+.|
T Consensus 288 Pf~eG~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg 367 (579)
T KOG1125|consen 288 PFKEGCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEG 367 (579)
T ss_pred hHHHHHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhh
Confidence 47799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhcCCC
Q 017264 85 EYETAKVALEKGASLAPG 102 (374)
Q Consensus 85 ~~~eA~~~~~~a~~l~p~ 102 (374)
.-.+|+.+|.+=++..|.
T Consensus 368 ~q~~Al~~L~~Wi~~~p~ 385 (579)
T KOG1125|consen 368 LQNQALKMLDKWIRNKPK 385 (579)
T ss_pred hHHHHHHHHHHHHHhCcc
Confidence 999999999887766654
No 138
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=98.41 E-value=1.1e-05 Score=80.25 Aligned_cols=118 Identities=14% Similarity=0.106 Sum_probs=103.7
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHH
Q 017264 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMS-KAYWRKATACM 81 (374)
Q Consensus 3 ~~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~-~a~~~lg~~~~ 81 (374)
.....+|...+..|+|..|.+.+.++.+..|.....+...|.++.++|+++.|..++.++.+..|+.. .+...++.++.
T Consensus 85 ~~~~~~glla~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l 164 (409)
T TIGR00540 85 QKQTEEALLKLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILL 164 (409)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHH
Confidence 45577899999999999999999999999998888888889999999999999999999999888875 45666799999
Q ss_pred HhcCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhh
Q 017264 82 KLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE 120 (374)
Q Consensus 82 ~lg~~~eA~~~~~~a~~l~p~~~~~~~~~~~~~~~l~~~ 120 (374)
..|+++.|+..++..++..|+++.+...+..+....+..
T Consensus 165 ~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~ 203 (409)
T TIGR00540 165 AQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAW 203 (409)
T ss_pred HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhH
Confidence 999999999999999999999998888888877666554
No 139
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.40 E-value=1.2e-05 Score=77.79 Aligned_cols=101 Identities=19% Similarity=0.106 Sum_probs=83.3
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHH-------------------------------------HHHHHHH
Q 017264 4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELF-------------------------------------ADRAQAS 46 (374)
Q Consensus 4 ~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~-------------------------------------~~ra~~~ 46 (374)
.....|..++..|++++|+..+.+++..+|.+..++ ..+|.++
T Consensus 45 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~ 124 (355)
T cd05804 45 RAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKLHLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGL 124 (355)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHhHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHH
Confidence 345678888899999999999999988888775432 2345567
Q ss_pred HHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCh
Q 017264 47 IKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDS 104 (374)
Q Consensus 47 ~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~a~~l~p~~~ 104 (374)
..+|++++|+..+++++.++|++..++..+|.+++..|++++|+.+|++++...|.+.
T Consensus 125 ~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~ 182 (355)
T cd05804 125 EEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSS 182 (355)
T ss_pred HHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCc
Confidence 7788999999999999999999988999999999999999999999999998877543
No 140
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.39 E-value=1.8e-06 Score=75.10 Aligned_cols=87 Identities=16% Similarity=0.137 Sum_probs=75.9
Q ss_pred CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChhHHHH
Q 017264 33 PNSAELFADRAQASIKLQNFTEAVADANRAIELEPSM---SKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNL 109 (374)
Q Consensus 33 p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~---~~a~~~lg~~~~~lg~~~eA~~~~~~a~~l~p~~~~~~~~ 109 (374)
+..+.+++.+|.+|...|++++|+..|++++.+.++. ..+++.+|.++..+|++++|+.+|++++.+.|.+......
T Consensus 32 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 111 (172)
T PRK02603 32 AKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNN 111 (172)
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHH
Confidence 3557789999999999999999999999999987753 5789999999999999999999999999999999887777
Q ss_pred HHHHHHHHHh
Q 017264 110 IKECEERIAE 119 (374)
Q Consensus 110 ~~~~~~~l~~ 119 (374)
++.+...++.
T Consensus 112 lg~~~~~~g~ 121 (172)
T PRK02603 112 IAVIYHKRGE 121 (172)
T ss_pred HHHHHHHcCC
Confidence 7777655443
No 141
>PRK11906 transcriptional regulator; Provisional
Probab=98.39 E-value=6.8e-06 Score=80.59 Aligned_cols=111 Identities=10% Similarity=0.017 Sum_probs=93.2
Q ss_pred HHHHHHHHHHhccC---HHHHHHHHHHHH---HhCCCCHHHHHHHHHHHHHc---------cCHHHHHHHHHHHHHhCCC
Q 017264 4 DLEKKAKEAFIDDY---FELAYDLYSQAI---EISPNSAELFADRAQASIKL---------QNFTEAVADANRAIELEPS 68 (374)
Q Consensus 4 ~l~~~g~~~~~~~~---y~~Al~~y~~aL---~~~p~~~~~~~~ra~~~~~l---------~~~~~Al~~~~~al~l~p~ 68 (374)
.++.+|...+.++. .+.|+.+|.+|+ .++|..+.+|..+|.||..+ ....+|++.+++|++++|.
T Consensus 257 d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~ 336 (458)
T PRK11906 257 DEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTV 336 (458)
T ss_pred HHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCC
Confidence 45666766655554 467889999999 88999999999999999775 3456788999999999999
Q ss_pred CHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChhHHHHHHHHH
Q 017264 69 MSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECE 114 (374)
Q Consensus 69 ~~~a~~~lg~~~~~lg~~~eA~~~~~~a~~l~p~~~~~~~~~~~~~ 114 (374)
++.+++.+|.++...++++.|...|++++.++|+......+.+.+.
T Consensus 337 Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~ 382 (458)
T PRK11906 337 DGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVH 382 (458)
T ss_pred CHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHH
Confidence 9999999999999999999999999999999999988776666643
No 142
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.39 E-value=3.8e-07 Score=68.36 Aligned_cols=65 Identities=20% Similarity=0.342 Sum_probs=52.1
Q ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Q 017264 35 SAELFADRAQASIKLQNFTEAVADANRAIELE-------PSMSKAYWRKATACMKLEEYETAKVALEKGASL 99 (374)
Q Consensus 35 ~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~-------p~~~~a~~~lg~~~~~lg~~~eA~~~~~~a~~l 99 (374)
.+.++.++|.+|..+|+|++|+.+|++++.+. +..+.+++++|.++..+|++++|+.+|++++++
T Consensus 4 ~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 4 TANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 35678889999999999999999999888662 123667888999999999999999999988765
No 143
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=98.38 E-value=3e-06 Score=87.81 Aligned_cols=98 Identities=18% Similarity=0.087 Sum_probs=88.8
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 017264 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPN-SAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACM 81 (374)
Q Consensus 3 ~~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~-~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~ 81 (374)
+-+++.+.+++..|.|.+|+.+|..++...+. +..+|+.+|.||..++.|++|++.|.+++.++|++.++.+.++.++.
T Consensus 415 dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~ 494 (895)
T KOG2076|consen 415 DLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQ 494 (895)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHH
Confidence 45678999999999999999999999988654 46789999999999999999999999999999999999999999999
Q ss_pred HhcCHHHHHHHHHHHHhcC
Q 017264 82 KLEEYETAKVALEKGASLA 100 (374)
Q Consensus 82 ~lg~~~eA~~~~~~a~~l~ 100 (374)
.+|+.++|++.++....-+
T Consensus 495 ~~g~~EkalEtL~~~~~~D 513 (895)
T KOG2076|consen 495 QLGNHEKALETLEQIINPD 513 (895)
T ss_pred hcCCHHHHHHHHhcccCCC
Confidence 9999999999999866333
No 144
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.36 E-value=1.6e-05 Score=67.23 Aligned_cols=93 Identities=18% Similarity=0.167 Sum_probs=80.6
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 017264 4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNS---AELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATAC 80 (374)
Q Consensus 4 ~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~---~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~ 80 (374)
..+..|..++..|+|++|+..|..++...++. ..+.+.+|.+++.+|+|++|+..+.. +.-.+-.+.++..+|.+|
T Consensus 50 A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~-~~~~~~~~~~~~~~Gdi~ 128 (145)
T PF09976_consen 50 AALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQ-IPDEAFKALAAELLGDIY 128 (145)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHh-ccCcchHHHHHHHHHHHH
Confidence 45779999999999999999999999987665 45788899999999999999999865 333444567888999999
Q ss_pred HHhcCHHHHHHHHHHHH
Q 017264 81 MKLEEYETAKVALEKGA 97 (374)
Q Consensus 81 ~~lg~~~eA~~~~~~a~ 97 (374)
...|++++|+..|++++
T Consensus 129 ~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 129 LAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHCCCHHHHHHHHHHhC
Confidence 99999999999999874
No 145
>PRK11906 transcriptional regulator; Provisional
Probab=98.35 E-value=6.2e-06 Score=80.84 Aligned_cols=91 Identities=14% Similarity=0.145 Sum_probs=85.6
Q ss_pred ccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHH
Q 017264 15 DDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALE 94 (374)
Q Consensus 15 ~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~ 94 (374)
..+-.+|+.+..+|++++|.++.++..+|.++.-.++++.|+..|++|+.++|+.+.+|+..|.+++..|+.++|+..++
T Consensus 317 ~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~ 396 (458)
T PRK11906 317 ELAAQKALELLDYVSDITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICID 396 (458)
T ss_pred hHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCChh
Q 017264 95 KGASLAPGDSR 105 (374)
Q Consensus 95 ~a~~l~p~~~~ 105 (374)
++++++|....
T Consensus 397 ~alrLsP~~~~ 407 (458)
T PRK11906 397 KSLQLEPRRRK 407 (458)
T ss_pred HHhccCchhhH
Confidence 99999997553
No 146
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.35 E-value=1.3e-06 Score=81.41 Aligned_cols=94 Identities=15% Similarity=0.139 Sum_probs=56.5
Q ss_pred HHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcC
Q 017264 6 EKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEE 85 (374)
Q Consensus 6 ~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~lg~ 85 (374)
...|..+-..+++++|+++|..+++++|.|.+++...|..|+--++.+-|+.+|++.+++.-.+++.+.++|.||+..++
T Consensus 294 ~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ 373 (478)
T KOG1129|consen 294 LGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQ 373 (478)
T ss_pred hhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcc
Confidence 34555666666666677777666666666655555555555555555555555555555555555556666666666666
Q ss_pred HHHHHHHHHHHHhc
Q 017264 86 YETAKVALEKGASL 99 (374)
Q Consensus 86 ~~eA~~~~~~a~~l 99 (374)
|+-++-+|++++..
T Consensus 374 ~D~~L~sf~RAlst 387 (478)
T KOG1129|consen 374 IDLVLPSFQRALST 387 (478)
T ss_pred hhhhHHHHHHHHhh
Confidence 65555555555544
No 147
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.34 E-value=5.7e-06 Score=66.34 Aligned_cols=84 Identities=14% Similarity=0.145 Sum_probs=71.0
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCh---hHHHH
Q 017264 36 AELFADRAQASIKLQNFTEAVADANRAIELEPSM---SKAYWRKATACMKLEEYETAKVALEKGASLAPGDS---RFTNL 109 (374)
Q Consensus 36 ~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~---~~a~~~lg~~~~~lg~~~eA~~~~~~a~~l~p~~~---~~~~~ 109 (374)
+..++.+|..+.+.|++++|+..|..++..+|++ ..+++.+|.+++..|++++|+.+|+.++...|++. .+...
T Consensus 2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 81 (119)
T TIGR02795 2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLK 81 (119)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence 4578999999999999999999999999999876 67899999999999999999999999999998863 34555
Q ss_pred HHHHHHHHHh
Q 017264 110 IKECEERIAE 119 (374)
Q Consensus 110 ~~~~~~~l~~ 119 (374)
++.+...++.
T Consensus 82 ~~~~~~~~~~ 91 (119)
T TIGR02795 82 LGMSLQELGD 91 (119)
T ss_pred HHHHHHHhCC
Confidence 5555554433
No 148
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.30 E-value=8.2e-06 Score=86.76 Aligned_cols=112 Identities=13% Similarity=0.063 Sum_probs=94.6
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH------------
Q 017264 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMS------------ 70 (374)
Q Consensus 3 ~~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~------------ 70 (374)
..+......+...+++++|+..+..++...|+...+|+.+|..|++.+++.+|... .++.+.+...
T Consensus 32 ~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ve~~~~~i 109 (906)
T PRK14720 32 KELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIVEHICDKI 109 (906)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHHHHHHHHH
Confidence 34567778888999999999999999999999999999999999998888776555 5555544444
Q ss_pred -------HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Q 017264 71 -------KAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEER 116 (374)
Q Consensus 71 -------~a~~~lg~~~~~lg~~~eA~~~~~~a~~l~p~~~~~~~~~~~~~~~ 116 (374)
.+++.+|.||-.+|++++|...|+++++++|+|+.+...++-....
T Consensus 110 ~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae 162 (906)
T PRK14720 110 LLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEE 162 (906)
T ss_pred HhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHH
Confidence 8999999999999999999999999999999999887777655443
No 149
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=98.28 E-value=8.9e-06 Score=84.99 Aligned_cols=114 Identities=14% Similarity=0.090 Sum_probs=103.4
Q ss_pred ChHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 017264 1 MATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNS-AELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATA 79 (374)
Q Consensus 1 ma~~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~-~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~ 79 (374)
|++.++..|..+...|+|++|-.+|.+++..++++ ...++.+|+.|++.|+++.|+..|++.+...|++.+....+|.+
T Consensus 306 ~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~L 385 (1018)
T KOG2002|consen 306 KAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCL 385 (1018)
T ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhH
Confidence 46778999999999999999999999999999998 78899999999999999999999999999999999999999999
Q ss_pred HHHhc----CHHHHHHHHHHHHhcCCCChhHHHHHHHHH
Q 017264 80 CMKLE----EYETAKVALEKGASLAPGDSRFTNLIKECE 114 (374)
Q Consensus 80 ~~~lg----~~~eA~~~~~~a~~l~p~~~~~~~~~~~~~ 114 (374)
|...+ ..+.|...+.++++..|.+......++.+.
T Consensus 386 ya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~ 424 (1018)
T KOG2002|consen 386 YAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLL 424 (1018)
T ss_pred HHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 98886 668899999999999998887665555544
No 150
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.27 E-value=7.5e-06 Score=81.15 Aligned_cols=115 Identities=19% Similarity=0.202 Sum_probs=100.9
Q ss_pred HHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-------CCHHHHHHHHH
Q 017264 6 EKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEP-------SMSKAYWRKAT 78 (374)
Q Consensus 6 ~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p-------~~~~a~~~lg~ 78 (374)
+-.|..++..+++.-|-..|.+|+.+.|+++..+..+|.+.+..+.|.+|+.+|..++..-+ .....+.++|.
T Consensus 384 LYlgmey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH 463 (611)
T KOG1173|consen 384 LYLGMEYMRTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGH 463 (611)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHH
Confidence 45788889999999999999999999999999999999999999999999999998884322 23445789999
Q ss_pred HHHHhcCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhh
Q 017264 79 ACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE 120 (374)
Q Consensus 79 ~~~~lg~~~eA~~~~~~a~~l~p~~~~~~~~~~~~~~~l~~~ 120 (374)
++.+++.|.+|+.+|++++.+.|.+......++-+...+++.
T Consensus 464 ~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnl 505 (611)
T KOG1173|consen 464 AYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNL 505 (611)
T ss_pred HHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcCh
Confidence 999999999999999999999999999999999988888776
No 151
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.25 E-value=2.6e-06 Score=63.78 Aligned_cols=64 Identities=19% Similarity=0.307 Sum_probs=55.7
Q ss_pred hHHHHHHHHHHHhccCHHHHHHHHHHHHHh---CC----CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q 017264 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEI---SP----NSAELFADRAQASIKLQNFTEAVADANRAIEL 65 (374)
Q Consensus 2 a~~l~~~g~~~~~~~~y~~Al~~y~~aL~~---~p----~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l 65 (374)
+..+.+.|..++..|+|++|+.+|.+++.+ .+ ..+.++.++|.||..+|++++|+..+++++.+
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 457889999999999999999999999977 21 22678999999999999999999999999976
No 152
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.25 E-value=3.9e-05 Score=69.40 Aligned_cols=113 Identities=17% Similarity=0.093 Sum_probs=101.0
Q ss_pred HHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcC--
Q 017264 8 KAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEE-- 85 (374)
Q Consensus 8 ~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~lg~-- 85 (374)
+--.+-..|.--+||+.++..|+.-+++.++|..+|..|+..|+|+.|.=+++..+-+.|.++..+.|+|.++|-+|.
T Consensus 126 KlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~e 205 (289)
T KOG3060|consen 126 KLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAE 205 (289)
T ss_pred HHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHH
Confidence 334555677778999999999999999999999999999999999999999999999999999999999999998764
Q ss_pred -HHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhh
Q 017264 86 -YETAKVALEKGASLAPGDSRFTNLIKECEERIAEE 120 (374)
Q Consensus 86 -~~eA~~~~~~a~~l~p~~~~~~~~~~~~~~~l~~~ 120 (374)
+..|..+|.++++++|.+......+-.|...+.+.
T Consensus 206 N~~~arkyy~~alkl~~~~~ral~GI~lc~~~la~~ 241 (289)
T KOG3060|consen 206 NLELARKYYERALKLNPKNLRALFGIYLCGSALAQI 241 (289)
T ss_pred HHHHHHHHHHHHHHhChHhHHHHHHHHHHHHHHHHH
Confidence 67899999999999998888888888888777755
No 153
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.24 E-value=5.1e-06 Score=77.46 Aligned_cols=118 Identities=13% Similarity=0.000 Sum_probs=88.6
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 017264 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK 82 (374)
Q Consensus 3 ~~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~ 82 (374)
+.+.-.+.+|....+...|+..|.+.|+..|.+..++...|.+|..++++++|++.|..++.++|.+.++.--.|..||.
T Consensus 257 dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY 336 (478)
T KOG1129|consen 257 DTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFY 336 (478)
T ss_pred hHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeecccc
Confidence 44555666777777777777777777777777777777777777777888888888888888888777777777777777
Q ss_pred hcCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhh
Q 017264 83 LEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE 120 (374)
Q Consensus 83 lg~~~eA~~~~~~a~~l~p~~~~~~~~~~~~~~~l~~~ 120 (374)
-++.+-|+.+|++.+++.-.++++...++.|--.-++.
T Consensus 337 ~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~ 374 (478)
T KOG1129|consen 337 DNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQI 374 (478)
T ss_pred CCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcch
Confidence 88888888888888887777777777777776554443
No 154
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=98.22 E-value=1.8e-05 Score=78.65 Aligned_cols=115 Identities=8% Similarity=-0.029 Sum_probs=94.4
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHH--HHHHHHHHHccCHHHHHHHHHHHHHhCCCCH--HHHHHHHHH
Q 017264 4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELF--ADRAQASIKLQNFTEAVADANRAIELEPSMS--KAYWRKATA 79 (374)
Q Consensus 4 ~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~--~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~--~a~~~lg~~ 79 (374)
.....|..+...|++++|+..+.++++..|++.... ..+...++..++...++..++++++.+|+++ ..+..+|.+
T Consensus 265 l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l 344 (409)
T TIGR00540 265 LKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQL 344 (409)
T ss_pred HHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHH
Confidence 356778899999999999999999999999987532 2233344456888999999999999999999 888899999
Q ss_pred HHHhcCHHHHHHHHH--HHHhcCCCChhHHHHHHHHHHHHHh
Q 017264 80 CMKLEEYETAKVALE--KGASLAPGDSRFTNLIKECEERIAE 119 (374)
Q Consensus 80 ~~~lg~~~eA~~~~~--~a~~l~p~~~~~~~~~~~~~~~l~~ 119 (374)
+++.|+|++|..+|+ .+++..|++.... .++.+..+++.
T Consensus 345 ~~~~~~~~~A~~~le~a~a~~~~p~~~~~~-~La~ll~~~g~ 385 (409)
T TIGR00540 345 LMKHGEFIEAADAFKNVAACKEQLDANDLA-MAADAFDQAGD 385 (409)
T ss_pred HHHcccHHHHHHHHHHhHHhhcCCCHHHHH-HHHHHHHHcCC
Confidence 999999999999999 6788889776544 66666665544
No 155
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=98.21 E-value=2.4e-05 Score=72.98 Aligned_cols=116 Identities=16% Similarity=0.214 Sum_probs=93.0
Q ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 017264 5 LEKKAKEAFIDDYFELAYDLYSQAIEISPNS-----AELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATA 79 (374)
Q Consensus 5 l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~-----~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~ 79 (374)
+....+.|...++|.+||+.-.+.+.+.+.. +.+|+.+|..+....+++.|+..+.+|++.+|+...+-+.+|.+
T Consensus 144 lqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v 223 (389)
T COG2956 144 LQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRV 223 (389)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHH
Confidence 4455667777788888888887777776654 46777788887778889999999999999999999999999999
Q ss_pred HHHhcCHHHHHHHHHHHHhcCCCCh-hHHHHHHHHHHHHHhh
Q 017264 80 CMKLEEYETAKVALEKGASLAPGDS-RFTNLIKECEERIAEE 120 (374)
Q Consensus 80 ~~~lg~~~eA~~~~~~a~~l~p~~~-~~~~~~~~~~~~l~~~ 120 (374)
+...|+|..|+..++.+++.+|+.. ++...+..|...+++.
T Consensus 224 ~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~ 265 (389)
T COG2956 224 ELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKP 265 (389)
T ss_pred HHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCH
Confidence 9999999999999999998888754 4666677777776665
No 156
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=98.19 E-value=6.6e-05 Score=74.31 Aligned_cols=117 Identities=14% Similarity=0.085 Sum_probs=84.9
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHH-HHHHHHccCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHH
Q 017264 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADR-AQASIKLQNFTEAVADANRAIELEPSMSK-AYWRKATAC 80 (374)
Q Consensus 3 ~~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~r-a~~~~~l~~~~~Al~~~~~al~l~p~~~~-a~~~lg~~~ 80 (374)
...+..|...+..|||+.|.+...++-...++ +.+++.+ +.+..++|+++.|..++.++.+.+|+... ..+..+.++
T Consensus 85 ~~~~~~gl~a~~eGd~~~A~k~l~~~~~~~~~-p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~ 163 (398)
T PRK10747 85 RKQTEQALLKLAEGDYQQVEKLMTRNADHAEQ-PVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQ 163 (398)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHhcccc-hHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHH
Confidence 34567788888888888888777765554333 4444444 45557888888888888888888887643 334558888
Q ss_pred HHhcCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhh
Q 017264 81 MKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE 120 (374)
Q Consensus 81 ~~lg~~~eA~~~~~~a~~l~p~~~~~~~~~~~~~~~l~~~ 120 (374)
...|+++.|+..+++..+.+|+++.+...+..+..+.+.-
T Consensus 164 l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw 203 (398)
T PRK10747 164 LARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAW 203 (398)
T ss_pred HHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhH
Confidence 8888888888888888888888888777777776665544
No 157
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.18 E-value=3.3e-05 Score=71.67 Aligned_cols=104 Identities=16% Similarity=0.143 Sum_probs=91.6
Q ss_pred cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcC---HHHHHHH
Q 017264 16 DYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEE---YETAKVA 92 (374)
Q Consensus 16 ~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~lg~---~~eA~~~ 92 (374)
...+..+..+..-|..+|++++-|..+|.+|+.++++..|+..|.+|+++.|++++.+..+|.+++...+ -.++...
T Consensus 136 ~~~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~l 215 (287)
T COG4235 136 QEMEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARAL 215 (287)
T ss_pred ccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHH
Confidence 3467778888999999999999999999999999999999999999999999999999999999876443 4688899
Q ss_pred HHHHHhcCCCChhHHHHHHHHHHHHHh
Q 017264 93 LEKGASLAPGDSRFTNLIKECEERIAE 119 (374)
Q Consensus 93 ~~~a~~l~p~~~~~~~~~~~~~~~l~~ 119 (374)
|.+++.++|+|......++.....-++
T Consensus 216 l~~al~~D~~~iral~lLA~~afe~g~ 242 (287)
T COG4235 216 LRQALALDPANIRALSLLAFAAFEQGD 242 (287)
T ss_pred HHHHHhcCCccHHHHHHHHHHHHHccc
Confidence 999999999999988888776554433
No 158
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=98.17 E-value=8.7e-05 Score=67.56 Aligned_cols=103 Identities=21% Similarity=0.189 Sum_probs=88.5
Q ss_pred hHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH---HHHHH
Q 017264 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNS---AELFADRAQASIKLQNFTEAVADANRAIELEPSMS---KAYWR 75 (374)
Q Consensus 2 a~~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~---~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~---~a~~~ 75 (374)
+..|.+.|...++.|+|.+|+..|..+....|.+ ..+.+.++.++++.++|++|+..+++-+++.|+++ -++|.
T Consensus 34 ~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Yl 113 (254)
T COG4105 34 ASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYL 113 (254)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHH
Confidence 4578999999999999999999999999998776 46889999999999999999999999999998754 47788
Q ss_pred HHHHHHHhcC--------HHHHHHHHHHHHhcCCCCh
Q 017264 76 KATACMKLEE--------YETAKVALEKGASLAPGDS 104 (374)
Q Consensus 76 lg~~~~~lg~--------~~eA~~~~~~a~~l~p~~~ 104 (374)
+|.+++..-+ -.+|+..|+..++..|+..
T Consensus 114 kgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~ 150 (254)
T COG4105 114 KGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSR 150 (254)
T ss_pred HHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCc
Confidence 8988875322 3578888889999999865
No 159
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.17 E-value=5.3e-05 Score=76.93 Aligned_cols=80 Identities=20% Similarity=0.181 Sum_probs=71.2
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Q 017264 37 ELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEER 116 (374)
Q Consensus 37 ~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~a~~l~p~~~~~~~~~~~~~~~ 116 (374)
++++.+|++|..+|++++|+.++++||...|..++.|+.+|.+|-+.|++.+|..+++.+..++..|.-+-.-..+..-+
T Consensus 195 w~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LR 274 (517)
T PF12569_consen 195 WTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLR 274 (517)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHH
Confidence 57788999999999999999999999999999999999999999999999999999999999999988665555554433
No 160
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.15 E-value=1.3e-05 Score=80.71 Aligned_cols=98 Identities=27% Similarity=0.280 Sum_probs=85.2
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--------
Q 017264 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEI--------SPNSAELFADRAQASIKLQNFTEAVADANRAIELE-------- 66 (374)
Q Consensus 3 ~~l~~~g~~~~~~~~y~~Al~~y~~aL~~--------~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~-------- 66 (374)
..+...|..|...++|.+|+.+|.+||.+ +|.-+.++.++|.+|.+.|+|.+|..+|++|+.+-
T Consensus 242 ~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~ 321 (508)
T KOG1840|consen 242 SMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASH 321 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccCh
Confidence 44556999999999999999999999998 44447899999999999999999999999999863
Q ss_pred CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Q 017264 67 PSMSKAYWRKATACMKLEEYETAKVALEKGASLA 100 (374)
Q Consensus 67 p~~~~a~~~lg~~~~~lg~~~eA~~~~~~a~~l~ 100 (374)
+.-+..+..++.++..++++++|+..|++++++.
T Consensus 322 ~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~ 355 (508)
T KOG1840|consen 322 PEVAAQLSELAAILQSMNEYEEAKKLLQKALKIY 355 (508)
T ss_pred HHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHH
Confidence 2345677789999999999999999999998763
No 161
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.15 E-value=1.3e-05 Score=76.87 Aligned_cols=115 Identities=18% Similarity=0.167 Sum_probs=94.5
Q ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH----------------------------------HHHcc
Q 017264 5 LEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQA----------------------------------SIKLQ 50 (374)
Q Consensus 5 l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~----------------------------------~~~l~ 50 (374)
+...|..++..|++.+|+..|.++..++|.+....-..|.. ++..+
T Consensus 235 l~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K 314 (564)
T KOG1174|consen 235 MMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVHAQLLYDEK 314 (564)
T ss_pred HHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhhhhhhhhhh
Confidence 45789999999999999999999999999885433333322 23347
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHh
Q 017264 51 NFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAE 119 (374)
Q Consensus 51 ~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~a~~l~p~~~~~~~~~~~~~~~l~~ 119 (374)
+|..|+.+.+++|+++|++..+++.+|.++.++|+..+|+..|+.++.+.|-+-.+...+-.|.-..+.
T Consensus 315 ~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~ 383 (564)
T KOG1174|consen 315 KFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKR 383 (564)
T ss_pred hHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhch
Confidence 788899999999999999999999999999999999999999999999999887776666665544433
No 162
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.11 E-value=1.6e-05 Score=79.97 Aligned_cols=97 Identities=21% Similarity=0.182 Sum_probs=84.3
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------CC
Q 017264 4 DLEKKAKEAFIDDYFELAYDLYSQAIEI--------SPNSAELFADRAQASIKLQNFTEAVADANRAIEL--------EP 67 (374)
Q Consensus 4 ~l~~~g~~~~~~~~y~~Al~~y~~aL~~--------~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l--------~p 67 (374)
.+...|..++.+|+|+.|+.++.+||+. .+.-...+..+|..|..+++|.+|+..|.+|+.+ +|
T Consensus 201 ~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~ 280 (508)
T KOG1840|consen 201 TLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHP 280 (508)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCH
Confidence 4556899999999999999999999998 5554566666999999999999999999999976 23
Q ss_pred CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Q 017264 68 SMSKAYWRKATACMKLEEYETAKVALEKGASLA 100 (374)
Q Consensus 68 ~~~~a~~~lg~~~~~lg~~~eA~~~~~~a~~l~ 100 (374)
.-+.++.+||.+|+..|+|++|..+|++++++.
T Consensus 281 ~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~ 313 (508)
T KOG1840|consen 281 AVAATLNNLAVLYYKQGKFAEAEEYCERALEIY 313 (508)
T ss_pred HHHHHHHHHHHHHhccCChHHHHHHHHHHHHHH
Confidence 346789999999999999999999999998764
No 163
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.10 E-value=2.5e-05 Score=75.59 Aligned_cols=112 Identities=15% Similarity=0.015 Sum_probs=97.9
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 017264 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK 82 (374)
Q Consensus 3 ~~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~ 82 (374)
+++++.|..+-..|+.++|++.|-+.-.+--++++.++.+|.+|..+.+...|++.+.++..+-|+++..+-.+|.+|-+
T Consensus 525 ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~slip~dp~ilskl~dlydq 604 (840)
T KOG2003|consen 525 EALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQ 604 (840)
T ss_pred HHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhc
Confidence 57889999999999999999999887666678889999999999999999999999999999999999999999999999
Q ss_pred hcCHHHHHHHHHHHHhcCCCChhHHHHHHHHH
Q 017264 83 LEEYETAKVALEKGASLAPGDSRFTNLIKECE 114 (374)
Q Consensus 83 lg~~~eA~~~~~~a~~l~p~~~~~~~~~~~~~ 114 (374)
.|+-.+|.+|+-...+..|-|.+...|++...
T Consensus 605 egdksqafq~~ydsyryfp~nie~iewl~ayy 636 (840)
T KOG2003|consen 605 EGDKSQAFQCHYDSYRYFPCNIETIEWLAAYY 636 (840)
T ss_pred ccchhhhhhhhhhcccccCcchHHHHHHHHHH
Confidence 99988888888888888888888888876543
No 164
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=98.09 E-value=6.4e-05 Score=70.18 Aligned_cols=104 Identities=14% Similarity=0.136 Sum_probs=95.5
Q ss_pred hHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHH
Q 017264 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSM-SKAYWRKATAC 80 (374)
Q Consensus 2 a~~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~-~~a~~~lg~~~ 80 (374)
|+-+-..|..+....+.+.|+..+.+|+..+|.+..+-+.+|.++...|+|+.|+..++.+++.+|.. +.+.-.+..||
T Consensus 180 AqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y 259 (389)
T COG2956 180 AQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECY 259 (389)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHH
Confidence 44566788899999999999999999999999999999999999999999999999999999999975 67888999999
Q ss_pred HHhcCHHHHHHHHHHHHhcCCCChh
Q 017264 81 MKLEEYETAKVALEKGASLAPGDSR 105 (374)
Q Consensus 81 ~~lg~~~eA~~~~~~a~~l~p~~~~ 105 (374)
..+|+.++.+..+.++.+..++...
T Consensus 260 ~~lg~~~~~~~fL~~~~~~~~g~~~ 284 (389)
T COG2956 260 AQLGKPAEGLNFLRRAMETNTGADA 284 (389)
T ss_pred HHhCCHHHHHHHHHHHHHccCCccH
Confidence 9999999999999999998876553
No 165
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.09 E-value=2.3e-05 Score=75.18 Aligned_cols=108 Identities=19% Similarity=0.203 Sum_probs=100.4
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 017264 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK 82 (374)
Q Consensus 3 ~~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~ 82 (374)
..++-.|..++..++|..|+.+-.++|+.+|++..+|+-.|.++..+++.++|+-.|+.|..+.|...+.|-.+-.+|..
T Consensus 301 ~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA 380 (564)
T KOG1174|consen 301 SHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLA 380 (564)
T ss_pred hhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHh
Confidence 34667788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCHHHHHHHHHHHHhcCCCChhHHHHH
Q 017264 83 LEEYETAKVALEKGASLAPGDSRFTNLI 110 (374)
Q Consensus 83 lg~~~eA~~~~~~a~~l~p~~~~~~~~~ 110 (374)
.|++.+|......+.+.-|.+......+
T Consensus 381 ~~~~kEA~~~An~~~~~~~~sA~~LtL~ 408 (564)
T KOG1174|consen 381 QKRFKEANALANWTIRLFQNSARSLTLF 408 (564)
T ss_pred hchHHHHHHHHHHHHHHhhcchhhhhhh
Confidence 9999999999999999988887665555
No 166
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.08 E-value=2e-05 Score=68.84 Aligned_cols=68 Identities=28% Similarity=0.388 Sum_probs=64.2
Q ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHH
Q 017264 5 LEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKA 72 (374)
Q Consensus 5 l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a 72 (374)
+.++|.++++.+.++.||..+++||+++|....++.+||.+|.++.+|++|+.+|.+.++++|....+
T Consensus 137 y~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek~eealeDyKki~E~dPs~~ea 204 (271)
T KOG4234|consen 137 YSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEKYEEALEDYKKILESDPSRREA 204 (271)
T ss_pred HhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCcchHHH
Confidence 56889999999999999999999999999999999999999999999999999999999999987643
No 167
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=98.08 E-value=6e-05 Score=74.61 Aligned_cols=113 Identities=12% Similarity=0.089 Sum_probs=92.9
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Q 017264 4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKL 83 (374)
Q Consensus 4 ~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~l 83 (374)
.....|..+...|++++|...+.++++.. .+..+...++.+ ..+++.+++..++..++.+|+++..++.+|.++...
T Consensus 265 ~~~~~A~~l~~~g~~~~A~~~L~~~l~~~-~~~~l~~l~~~l--~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~ 341 (398)
T PRK10747 265 LQVAMAEHLIECDDHDTAQQIILDGLKRQ-YDERLVLLIPRL--KTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKH 341 (398)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCHHHHHHHhhc--cCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHC
Confidence 34567889999999999999999999954 455544444444 459999999999999999999999999999999999
Q ss_pred cCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhh
Q 017264 84 EEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE 120 (374)
Q Consensus 84 g~~~eA~~~~~~a~~l~p~~~~~~~~~~~~~~~l~~~ 120 (374)
++|++|..+|++++...|++..+ .++..+..+++..
T Consensus 342 ~~~~~A~~~le~al~~~P~~~~~-~~La~~~~~~g~~ 377 (398)
T PRK10747 342 GEWQEASLAFRAALKQRPDAYDY-AWLADALDRLHKP 377 (398)
T ss_pred CCHHHHHHHHHHHHhcCCCHHHH-HHHHHHHHHcCCH
Confidence 99999999999999999987653 3566666655443
No 168
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.08 E-value=9.9e-05 Score=63.94 Aligned_cols=101 Identities=22% Similarity=0.209 Sum_probs=92.4
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHH
Q 017264 4 DLEKKAKEAFIDDYFELAYDLYSQAIEI-SPNSAELFADRAQASIKLQNFTEAVADANRAIELEPS--MSKAYWRKATAC 80 (374)
Q Consensus 4 ~l~~~g~~~~~~~~y~~Al~~y~~aL~~-~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~--~~~a~~~lg~~~ 80 (374)
.-...|+.+...|+|.+|..+|.+++.- ..+++..+..+|.+.+..+++..|...++...+.+|. .++.++.+|..|
T Consensus 91 nr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~l 170 (251)
T COG4700 91 NRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFARTL 170 (251)
T ss_pred HHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHHHHHH
Confidence 3467899999999999999999999874 6778999999999999999999999999999999984 678899999999
Q ss_pred HHhcCHHHHHHHHHHHHhcCCCCh
Q 017264 81 MKLEEYETAKVALEKGASLAPGDS 104 (374)
Q Consensus 81 ~~lg~~~eA~~~~~~a~~l~p~~~ 104 (374)
..+|.|.+|...|+.++...|+-.
T Consensus 171 aa~g~~a~Aesafe~a~~~ypg~~ 194 (251)
T COG4700 171 AAQGKYADAESAFEVAISYYPGPQ 194 (251)
T ss_pred HhcCCchhHHHHHHHHHHhCCCHH
Confidence 999999999999999999998754
No 169
>PRK15331 chaperone protein SicA; Provisional
Probab=98.05 E-value=2.4e-05 Score=66.77 Aligned_cols=89 Identities=11% Similarity=0.014 Sum_probs=80.7
Q ss_pred CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChhHHHHHH
Q 017264 32 SPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIK 111 (374)
Q Consensus 32 ~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~a~~l~p~~~~~~~~~~ 111 (374)
.++..+..+..|.-++..|++++|...|.-++.+++.+++.++.||.++..+++|+.|+.+|..+.-++++++......+
T Consensus 33 s~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~ag 112 (165)
T PRK15331 33 PQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTG 112 (165)
T ss_pred CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHH
Confidence 44446788889999999999999999999999999999999999999999999999999999999999999998888888
Q ss_pred HHHHHHHhh
Q 017264 112 ECEERIAEE 120 (374)
Q Consensus 112 ~~~~~l~~~ 120 (374)
.|.-.+++.
T Consensus 113 qC~l~l~~~ 121 (165)
T PRK15331 113 QCQLLMRKA 121 (165)
T ss_pred HHHHHhCCH
Confidence 888776665
No 170
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.04 E-value=8.7e-06 Score=61.95 Aligned_cols=58 Identities=22% Similarity=0.347 Sum_probs=51.9
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 017264 4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRA 62 (374)
Q Consensus 4 ~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~a 62 (374)
.++..|.++++.|+|.+|+..+++ +..++.+...++.+|.|++++|+|++|+..+++|
T Consensus 27 ~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 27 YLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKALEKA 84 (84)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHhcC
Confidence 356689999999999999999999 8888888888888999999999999999999875
No 171
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.02 E-value=9e-05 Score=79.02 Aligned_cols=112 Identities=11% Similarity=0.059 Sum_probs=96.5
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC----------------
Q 017264 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELE---------------- 66 (374)
Q Consensus 3 ~~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~---------------- 66 (374)
.+++..|.+|-+.|++++|...|.++|+++|+++.++.++|..|... ++++|++++.+|+...
T Consensus 117 ~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~i~~kq~~~~~e~W~k~ 195 (906)
T PRK14720 117 LALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYRFIKKKQYVGIEEIWSKL 195 (906)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHhhhcchHHHHHHHHH
Confidence 36788999999999999999999999999999999999999999999 9999999999988652
Q ss_pred ----CCCHHHHHH--------HH------------HHHHHhcCHHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Q 017264 67 ----PSMSKAYWR--------KA------------TACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEE 115 (374)
Q Consensus 67 ----p~~~~a~~~--------lg------------~~~~~lg~~~eA~~~~~~a~~l~p~~~~~~~~~~~~~~ 115 (374)
|.+.+.+++ ++ .+|...++|++++..|+.++.++|.|.-+...+..|..
T Consensus 196 ~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 196 VHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred HhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 333333221 23 67788999999999999999999999999999988887
No 172
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=98.02 E-value=6.5e-05 Score=75.81 Aligned_cols=107 Identities=24% Similarity=0.264 Sum_probs=82.7
Q ss_pred HhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHH
Q 017264 13 FIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVA 92 (374)
Q Consensus 13 ~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~ 92 (374)
+.+..|+.|..+|.+|-...|. ..+|+.-+....-+++.++|++.++.+|+..|.+.+.|+.+|+++.++++.+.|...
T Consensus 629 ~en~e~eraR~llakar~~sgT-eRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~a 707 (913)
T KOG0495|consen 629 FENDELERARDLLAKARSISGT-ERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREA 707 (913)
T ss_pred hccccHHHHHHHHHHHhccCCc-chhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHH
Confidence 3444444444444444443333 344555555556678999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCChhHHHHHHHHHHHHHhh
Q 017264 93 LEKGASLAPGDSRFTNLIKECEERIAEE 120 (374)
Q Consensus 93 ~~~a~~l~p~~~~~~~~~~~~~~~l~~~ 120 (374)
|..+++..|...-+...+.+++.+.++.
T Consensus 708 Y~~G~k~cP~~ipLWllLakleEk~~~~ 735 (913)
T KOG0495|consen 708 YLQGTKKCPNSIPLWLLLAKLEEKDGQL 735 (913)
T ss_pred HHhccccCCCCchHHHHHHHHHHHhcch
Confidence 9999999999998888888888876543
No 173
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.01 E-value=7e-05 Score=78.64 Aligned_cols=104 Identities=15% Similarity=0.140 Sum_probs=94.4
Q ss_pred ChHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccC-HHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 017264 1 MATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQN-FTEAVADANRAIELEPSMSKAYWRKATA 79 (374)
Q Consensus 1 ma~~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~-~~~Al~~~~~al~l~p~~~~a~~~lg~~ 79 (374)
|+..+...|.....+++|++||+...++|+.+|+|..+++.+|.++..++. .++|.+.|..|.+++|++.-+|-.+|..
T Consensus 1 ~vK~aLK~Ak~al~nk~YeealEqskkvLk~dpdNYnA~vFLGvAl~sl~q~le~A~ehYv~AaKldpdnlLAWkGL~nL 80 (1238)
T KOG1127|consen 1 EVKTALKSAKDALRNKEYEEALEQSKKVLKEDPDNYNAQVFLGVALWSLGQDLEKAAEHYVLAAKLDPDNLLAWKGLGNL 80 (1238)
T ss_pred ChhhHHHHHHHHHhhccHHHHHHHHHHHHhcCCCcchhhhHHHHHHHhccCCHHHHHHHHHHHHhcChhhhHHHHHHHHH
Confidence 456677889999999999999999999999999999999999999999988 9999999999999999999999999998
Q ss_pred HHH---hcCHHHHHHHHHHHHhcCCCCh
Q 017264 80 CMK---LEEYETAKVALEKGASLAPGDS 104 (374)
Q Consensus 80 ~~~---lg~~~eA~~~~~~a~~l~p~~~ 104 (374)
|.. .-+++++..+|++++.+.++..
T Consensus 81 ye~~~dIl~ld~~~~~yq~~~l~le~q~ 108 (1238)
T KOG1127|consen 81 YERYNDILDLDRAAKCYQRAVLILENQS 108 (1238)
T ss_pred HHccchhhhhhHhHHHHHHHHHhhhhhh
Confidence 876 5568899999999887776543
No 174
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.01 E-value=4.2e-05 Score=62.43 Aligned_cols=83 Identities=19% Similarity=0.155 Sum_probs=69.8
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCC---ChhHHHHH
Q 017264 37 ELFADRAQASIKLQNFTEAVADANRAIELEPS---MSKAYWRKATACMKLEEYETAKVALEKGASLAPG---DSRFTNLI 110 (374)
Q Consensus 37 ~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~---~~~a~~~lg~~~~~lg~~~eA~~~~~~a~~l~p~---~~~~~~~~ 110 (374)
.+++.+|.+|-.+|+.++|+..|++++..... -..+++.+|.+|..+|++++|+..|+.++...|+ +..+...+
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~ 81 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFL 81 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHH
Confidence 46889999999999999999999999997643 3679999999999999999999999999999888 66666666
Q ss_pred HHHHHHHHh
Q 017264 111 KECEERIAE 119 (374)
Q Consensus 111 ~~~~~~l~~ 119 (374)
+.+...++.
T Consensus 82 Al~L~~~gr 90 (120)
T PF12688_consen 82 ALALYNLGR 90 (120)
T ss_pred HHHHHHCCC
Confidence 655444333
No 175
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.01 E-value=7e-05 Score=76.80 Aligned_cols=115 Identities=17% Similarity=0.096 Sum_probs=107.5
Q ss_pred HHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcC
Q 017264 6 EKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEE 85 (374)
Q Consensus 6 ~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~lg~ 85 (374)
...|..+...++-++|...+.+|-.++|..+..|+.+|.++...|++.+|.+.|..|+.++|++..+.-.+|.++...|+
T Consensus 654 llaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~ 733 (799)
T KOG4162|consen 654 LLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGS 733 (799)
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCC
Confidence 45677778888889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHH--HHHHHHhcCCCChhHHHHHHHHHHHHHhh
Q 017264 86 YETAKV--ALEKGASLAPGDSRFTNLIKECEERIAEE 120 (374)
Q Consensus 86 ~~eA~~--~~~~a~~l~p~~~~~~~~~~~~~~~l~~~ 120 (374)
-.-|.. .+..+++++|.+.+++..++.+.++++..
T Consensus 734 ~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~ 770 (799)
T KOG4162|consen 734 PRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDS 770 (799)
T ss_pred cchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccch
Confidence 888888 99999999999999999999998887765
No 176
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.99 E-value=0.0001 Score=72.23 Aligned_cols=107 Identities=19% Similarity=0.195 Sum_probs=96.7
Q ss_pred HHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHH
Q 017264 11 EAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAK 90 (374)
Q Consensus 11 ~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~ 90 (374)
.+-..+.|+.|+.+|.+....+|+ +...+|.+|...++..+|++.+.+++...|.+...+...+..|...++|+.|+
T Consensus 178 ~l~~t~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~lAL 254 (395)
T PF09295_consen 178 YLSLTQRYDEAIELLEKLRERDPE---VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYELAL 254 (395)
T ss_pred HHhhcccHHHHHHHHHHHHhcCCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHH
Confidence 344567899999999999888876 45568889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCChhHHHHHHHHHHHHHhh
Q 017264 91 VALEKGASLAPGDSRFTNLIKECEERIAEE 120 (374)
Q Consensus 91 ~~~~~a~~l~p~~~~~~~~~~~~~~~l~~~ 120 (374)
.+++++..+.|++...+..+++|.-.++..
T Consensus 255 ~iAk~av~lsP~~f~~W~~La~~Yi~~~d~ 284 (395)
T PF09295_consen 255 EIAKKAVELSPSEFETWYQLAECYIQLGDF 284 (395)
T ss_pred HHHHHHHHhCchhHHHHHHHHHHHHhcCCH
Confidence 999999999999999999999999887776
No 177
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.99 E-value=0.00029 Score=63.02 Aligned_cols=105 Identities=16% Similarity=0.083 Sum_probs=84.1
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcc-----------CHHHHHHHHHHHHHhCCC
Q 017264 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNS---AELFADRAQASIKLQ-----------NFTEAVADANRAIELEPS 68 (374)
Q Consensus 3 ~~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~---~~~~~~ra~~~~~l~-----------~~~~Al~~~~~al~l~p~ 68 (374)
+.++..|..++..|+|..|+..|++.+...|++ ..+++.+|.|++.+. ...+|+..|+..+...|+
T Consensus 43 ~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~ 122 (203)
T PF13525_consen 43 QAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPN 122 (203)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcC
Confidence 467889999999999999999999999999887 468889999987653 345899999999999997
Q ss_pred CHH-----------------HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChhHH
Q 017264 69 MSK-----------------AYWRKATACMKLEEYETAKVALEKGASLAPGDSRFT 107 (374)
Q Consensus 69 ~~~-----------------a~~~lg~~~~~lg~~~eA~~~~~~a~~l~p~~~~~~ 107 (374)
..- --+..|..|++.|.|..|+..|+.+++..|+.+...
T Consensus 123 S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~ 178 (203)
T PF13525_consen 123 SEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAE 178 (203)
T ss_dssp STTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHH
Confidence 421 224468899999999999999999999999987543
No 178
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.95 E-value=2e-05 Score=52.26 Aligned_cols=42 Identities=26% Similarity=0.238 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 017264 37 ELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKAT 78 (374)
Q Consensus 37 ~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~ 78 (374)
.++..+|.+|..+|++++|+..|+++++++|+++.+++.+|.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 456667777777777777777777777777777777766664
No 179
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.93 E-value=0.0003 Score=59.16 Aligned_cols=95 Identities=21% Similarity=0.194 Sum_probs=77.2
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHHhCCCC----------------------HHHHHHHHHHHHHccCHHHHHHHHHH
Q 017264 4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNS----------------------AELFADRAQASIKLQNFTEAVADANR 61 (374)
Q Consensus 4 ~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~----------------------~~~~~~ra~~~~~l~~~~~Al~~~~~ 61 (374)
.+...|......++...++..+.+++.+.... ..++..++.++...|++++|+..+.+
T Consensus 8 ~~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 87 (146)
T PF03704_consen 8 ALVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQR 87 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHH
Confidence 45566777888899999999999999984332 34556677778889999999999999
Q ss_pred HHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Q 017264 62 AIELEPSMSKAYWRKATACMKLEEYETAKVALEKGAS 98 (374)
Q Consensus 62 al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~a~~ 98 (374)
++.++|.+-.+|..+-.+|...|++.+|+..|+++.+
T Consensus 88 ~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 88 ALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999998743
No 180
>cd06472 ACD_ScHsp26_like Alpha crystallin domain (ACD) found in Saccharomyces cerevisiae (Sc) small heat shock protein (Hsp)26 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. ScHsp26 is temperature-regulated, it switches from an inactive to a chaperone-active form upon elevation in temperature. It associates into large 24-mers storage forms which upon heat shock disassociate into dimers. These dimers initiate the interaction with non-native substrate proteins and re-assemble into large globular assemblies having one monomer of substrate bound per dimer. This group also contains Arabidopsis thaliana (Ath) Hsp15.7, a peroxisomal matrix protein which can complement the morphological phenotype of S. cerevisiae mutants deficient in Hsps26. AthHsp15.7 is minimally expressed under normal conditions and is strongly induced by heat and oxidative st
Probab=97.92 E-value=5.1e-05 Score=58.96 Aligned_cols=76 Identities=16% Similarity=0.210 Sum_probs=63.9
Q ss_pred CccccccCCeEEEEEEeCCCCCCceEEEEeee-EEEEEEEcC-----C----------CCeeeeccccccccccCceEEE
Q 017264 175 RHEFYQKPEEVVVTVFAKGIPAKNVTVDFGEQ-ILSVSIDVP-----G----------EEAYHFQPRLFGKIIPAKCRYE 238 (374)
Q Consensus 175 r~~W~Qt~~~V~i~i~~k~~~~~~v~v~~~~~-~l~v~~~~~-----~----------~~~y~~~~~L~~~I~p~~s~~~ 238 (374)
|.||+++++.+.|.+.++|+.++++.|.+..+ .|+|+.... . ...|.-.+.|...|+++..+..
T Consensus 1 ~~dv~E~~~~~~i~~~lPGv~~edi~i~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~i~LP~~v~~~~i~A~ 80 (92)
T cd06472 1 RVDWKETPEAHVFKADVPGVKKEDVKVEVEDGRVLRISGERKKEEEKKGDDWHRVERSSGRFVRRFRLPENADADEVKAF 80 (92)
T ss_pred CccEEEcCCeEEEEEECCCCChHhEEEEEeCCCEEEEEEEecccccccCCCEEEEEEeccEEEEEEECCCCCCHHHCEEE
Confidence 57999999999999999999999999999874 788886421 1 1246667899999999988888
Q ss_pred EcCcEEEEEEee
Q 017264 239 VLSTKVEIRLAK 250 (374)
Q Consensus 239 v~~~kiei~L~K 250 (374)
....-++|+|-|
T Consensus 81 ~~nGvL~I~lPK 92 (92)
T cd06472 81 LENGVLTVTVPK 92 (92)
T ss_pred EECCEEEEEecC
Confidence 999999999876
No 181
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.92 E-value=0.00015 Score=67.02 Aligned_cols=111 Identities=18% Similarity=0.138 Sum_probs=96.5
Q ss_pred HHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHH
Q 017264 11 EAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAK 90 (374)
Q Consensus 11 ~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~ 90 (374)
.+.+...|..||+.+..-.+..|.+...+.-+|.||+..++|..|..+|++...+.|......+..++.+|+.+.|.+|+
T Consensus 19 ~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADAL 98 (459)
T KOG4340|consen 19 RLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADAL 98 (459)
T ss_pred HHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHH
Confidence 45788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCChhHHHHHHHHHHHHHhhhcccC
Q 017264 91 VALEKGASLAPGDSRFTNLIKECEERIAEETGELQ 125 (374)
Q Consensus 91 ~~~~~a~~l~p~~~~~~~~~~~~~~~l~~~~~~~~ 125 (374)
...... .++..++...-+++..+.-..++.+
T Consensus 99 rV~~~~----~D~~~L~~~~lqLqaAIkYse~Dl~ 129 (459)
T KOG4340|consen 99 RVAFLL----LDNPALHSRVLQLQAAIKYSEGDLP 129 (459)
T ss_pred HHHHHh----cCCHHHHHHHHHHHHHHhcccccCc
Confidence 776654 3456777777777777776654443
No 182
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=97.91 E-value=3.3e-05 Score=78.68 Aligned_cols=112 Identities=17% Similarity=0.232 Sum_probs=87.6
Q ss_pred HHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHH----------------------------HHHHccCHHHHHHHH
Q 017264 8 KAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQ----------------------------ASIKLQNFTEAVADA 59 (374)
Q Consensus 8 ~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~----------------------------~~~~l~~~~~Al~~~ 59 (374)
...+|...|+..+|.....+-++ .++++.+|+.||. ..+..++|.++..++
T Consensus 430 vi~CY~~lg~~~kaeei~~q~le-k~~d~~lyc~LGDv~~d~s~yEkawElsn~~sarA~r~~~~~~~~~~~fs~~~~hl 508 (777)
T KOG1128|consen 430 VILCYLLLGQHGKAEEINRQELE-KDPDPRLYCLLGDVLHDPSLYEKAWELSNYISARAQRSLALLILSNKDFSEADKHL 508 (777)
T ss_pred HHHHHHHhcccchHHHHHHHHhc-CCCcchhHHHhhhhccChHHHHHHHHHhhhhhHHHHHhhccccccchhHHHHHHHH
Confidence 44455556665566555555555 3344444444443 234458999999999
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhh
Q 017264 60 NRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE 120 (374)
Q Consensus 60 ~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~a~~l~p~~~~~~~~~~~~~~~l~~~ 120 (374)
+..++++|.....||++|.+..+++++..|..+|..++.++|++.+..+++..++-++++.
T Consensus 509 e~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k 569 (777)
T KOG1128|consen 509 ERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKK 569 (777)
T ss_pred HHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhh
Confidence 9999999999999999999999999999999999999999999999999998888777665
No 183
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=97.90 E-value=0.00016 Score=57.94 Aligned_cols=96 Identities=22% Similarity=0.193 Sum_probs=75.9
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHHhCCCC------------HHHHHHHHHHHHHccCHHHHHHHHHHHHHh------
Q 017264 4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNS------------AELFADRAQASIKLQNFTEAVADANRAIEL------ 65 (374)
Q Consensus 4 ~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~------------~~~~~~ra~~~~~l~~~~~Al~~~~~al~l------ 65 (374)
.....|...+..|-|++|...|.+|+.....- +..+..++.++..+|+|++++..+.++|..
T Consensus 11 ~aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGE 90 (144)
T PF12968_consen 11 MALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGE 90 (144)
T ss_dssp HHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccc
Confidence 34567888899999999999999999983222 456777889999999999999999888864
Q ss_pred -CCC----CHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Q 017264 66 -EPS----MSKAYWRKATACMKLEEYETAKVALEKGASL 99 (374)
Q Consensus 66 -~p~----~~~a~~~lg~~~~~lg~~~eA~~~~~~a~~l 99 (374)
+.+ ...+.|++|+++..+|+.++|+..|+.+-++
T Consensus 91 L~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM 129 (144)
T PF12968_consen 91 LHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM 129 (144)
T ss_dssp TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred cccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 333 3557788999999999999999999987653
No 184
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=97.90 E-value=3.7e-05 Score=80.59 Aligned_cols=113 Identities=15% Similarity=0.056 Sum_probs=98.7
Q ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc
Q 017264 5 LEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLE 84 (374)
Q Consensus 5 l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~lg 84 (374)
+..+|-.+...+++-.|+..|+.||+.+|.+...+..+|.+|...|+|..|+..|.+|..++|.+.-+.|..+.+...+|
T Consensus 565 W~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~G 644 (1238)
T KOG1127|consen 565 WVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNG 644 (1238)
T ss_pred hhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhh
Confidence 45688889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Q 017264 85 EYETAKVALEKGASLAPGDSRFTNLIKECEERI 117 (374)
Q Consensus 85 ~~~eA~~~~~~a~~l~p~~~~~~~~~~~~~~~l 117 (374)
+|.+|+..+...+.-......++..++.+.-++
T Consensus 645 kYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~ 677 (1238)
T KOG1127|consen 645 KYKEALDALGLIIYAFSLERTGQNGLAESVIRD 677 (1238)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 999999999988776655555555555554443
No 185
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.89 E-value=0.00011 Score=69.14 Aligned_cols=103 Identities=21% Similarity=0.226 Sum_probs=81.1
Q ss_pred hHHHHHHHHHHHhc-cCHHHHHHHHHHHHHhCC--CC----HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC------
Q 017264 2 ATDLEKKAKEAFID-DYFELAYDLYSQAIEISP--NS----AELFADRAQASIKLQNFTEAVADANRAIELEPS------ 68 (374)
Q Consensus 2 a~~l~~~g~~~~~~-~~y~~Al~~y~~aL~~~p--~~----~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~------ 68 (374)
|..+...|..+... ++++.|+++|.+|+.... .. ...+.+.|.++.++++|.+|+..|+++....-.
T Consensus 114 A~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~ 193 (282)
T PF14938_consen 114 AKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKY 193 (282)
T ss_dssp HHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccch
Confidence 44567888888888 999999999999999822 12 467788999999999999999999999875421
Q ss_pred -CHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCh
Q 017264 69 -MSKAYWRKATACMKLEEYETAKVALEKGASLAPGDS 104 (374)
Q Consensus 69 -~~~a~~~lg~~~~~lg~~~eA~~~~~~a~~l~p~~~ 104 (374)
....+++.++|++..|++-.|...|++....+|.-.
T Consensus 194 ~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~ 230 (282)
T PF14938_consen 194 SAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFA 230 (282)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTST
T ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCC
Confidence 124567889999999999999999999999988544
No 186
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.87 E-value=2.2e-05 Score=48.76 Aligned_cols=32 Identities=28% Similarity=0.505 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCC
Q 017264 71 KAYWRKATACMKLEEYETAKVALEKGASLAPG 102 (374)
Q Consensus 71 ~a~~~lg~~~~~lg~~~eA~~~~~~a~~l~p~ 102 (374)
.+|+++|.+++.+|++++|+.+|+++++++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 45666666666666666666666666666664
No 187
>COG0071 IbpA Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]
Probab=97.86 E-value=7.1e-05 Score=63.41 Aligned_cols=79 Identities=16% Similarity=0.216 Sum_probs=70.3
Q ss_pred CccccccCCeEEEEEEeCCCCCCceEEEEeeeEEEEEEEcCC---------------CCeeeeccccccccccCceEEEE
Q 017264 175 RHEFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPG---------------EEAYHFQPRLFGKIIPAKCRYEV 239 (374)
Q Consensus 175 r~~W~Qt~~~V~i~i~~k~~~~~~v~v~~~~~~l~v~~~~~~---------------~~~y~~~~~L~~~I~p~~s~~~v 239 (374)
.|+.+++++.+.|++-++|+.+++|.|++.++.|+|+....+ ...|.-.+.|...|+++..+.+.
T Consensus 42 ~vdi~e~~~~~~I~~elPG~~kedI~I~~~~~~l~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~~~Lp~~v~~~~~~A~~ 121 (146)
T COG0071 42 PVDIEETDDEYRITAELPGVDKEDIEITVEGNTLTIRGEREEEEEEEEEGYLRRERAYGEFERTFRLPEKVDPEVIKAKY 121 (146)
T ss_pred cEEEEEcCCEEEEEEEcCCCChHHeEEEEECCEEEEEEEecccccccCCceEEEEEEeeeEEEEEECcccccccceeeEe
Confidence 589999999999999999999999999999999999986543 13577788999999999888999
Q ss_pred cCcEEEEEEeecCC
Q 017264 240 LSTKVEIRLAKAEP 253 (374)
Q Consensus 240 ~~~kiei~L~K~~~ 253 (374)
...-+.|+|.|.++
T Consensus 122 ~nGvL~I~lpk~~~ 135 (146)
T COG0071 122 KNGLLTVTLPKAEP 135 (146)
T ss_pred eCcEEEEEEecccc
Confidence 99999999999765
No 188
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.84 E-value=2.2e-05 Score=49.07 Aligned_cols=32 Identities=34% Similarity=0.483 Sum_probs=19.0
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHH
Q 017264 59 ANRAIELEPSMSKAYWRKATACMKLEEYETAK 90 (374)
Q Consensus 59 ~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~ 90 (374)
|++||+++|+++.+|+++|.+|...|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 45556666666666666666666666665554
No 189
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.82 E-value=0.00013 Score=68.90 Aligned_cols=97 Identities=16% Similarity=0.144 Sum_probs=80.3
Q ss_pred HHHHhccCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHH
Q 017264 10 KEAFIDDYFELAYDLYSQAIEISPNSA-ELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYET 88 (374)
Q Consensus 10 ~~~~~~~~y~~Al~~y~~aL~~~p~~~-~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~e 88 (374)
..+..+.||..|+.+++-.+..+...- ..-.-+|.|++.+|+|++|+..|..+...+..+++.+.++|.|+|.+|.|.+
T Consensus 30 edfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~e 109 (557)
T KOG3785|consen 30 EDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIE 109 (557)
T ss_pred HHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHH
Confidence 467789999999999999887755443 5666789999999999999999999998877889999999999999999999
Q ss_pred HHHHHHHHHhcCCCChhHHHHH
Q 017264 89 AKVALEKGASLAPGDSRFTNLI 110 (374)
Q Consensus 89 A~~~~~~a~~l~p~~~~~~~~~ 110 (374)
|.....++ |.++-..+.+
T Consensus 110 A~~~~~ka----~k~pL~~RLl 127 (557)
T KOG3785|consen 110 AKSIAEKA----PKTPLCIRLL 127 (557)
T ss_pred HHHHHhhC----CCChHHHHHH
Confidence 99887765 4444433333
No 190
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.82 E-value=4.4e-05 Score=47.19 Aligned_cols=33 Identities=30% Similarity=0.460 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC
Q 017264 71 KAYWRKATACMKLEEYETAKVALEKGASLAPGD 103 (374)
Q Consensus 71 ~a~~~lg~~~~~lg~~~eA~~~~~~a~~l~p~~ 103 (374)
++|+.+|.+++.+|+|++|+.+|+++++++|++
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 466777777777777777777777777777654
No 191
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.81 E-value=0.0008 Score=62.44 Aligned_cols=98 Identities=20% Similarity=0.100 Sum_probs=83.8
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHH-----------------------
Q 017264 4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADAN----------------------- 60 (374)
Q Consensus 4 ~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~----------------------- 60 (374)
..+..+..+...+++.+|...|..++...|.+..+...+|.||...|+.++|...+.
T Consensus 136 ~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~q 215 (304)
T COG3118 136 EALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQ 215 (304)
T ss_pred HHHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHH
Confidence 356788899999999999999999999999999999999999999999977643332
Q ss_pred -----------HHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC
Q 017264 61 -----------RAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAP 101 (374)
Q Consensus 61 -----------~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~a~~l~p 101 (374)
+.+..+|++.++-+.+|..+...|++++|+..|-..++.+-
T Consensus 216 aa~~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~ 267 (304)
T COG3118 216 AAATPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDR 267 (304)
T ss_pred HhcCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence 33344788999999999999999999999998887776643
No 192
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.80 E-value=0.00099 Score=61.39 Aligned_cols=107 Identities=14% Similarity=0.089 Sum_probs=86.6
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcc------------------CHHHHHHHHHHH
Q 017264 4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNS---AELFADRAQASIKLQ------------------NFTEAVADANRA 62 (374)
Q Consensus 4 ~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~---~~~~~~ra~~~~~l~------------------~~~~Al~~~~~a 62 (374)
.++..|..+++.++|+.|+..|+++++..|++ ..+++.+|.|+..++ ...+|+..|+..
T Consensus 71 a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~l 150 (243)
T PRK10866 71 VQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKL 150 (243)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHH
Confidence 46789999999999999999999999998887 568899998875553 135788999999
Q ss_pred HHhCCCCH---HH--------------HHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChhHHHHH
Q 017264 63 IELEPSMS---KA--------------YWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLI 110 (374)
Q Consensus 63 l~l~p~~~---~a--------------~~~lg~~~~~lg~~~eA~~~~~~a~~l~p~~~~~~~~~ 110 (374)
+...|+.. ++ -+..|.-|++.|.|..|+.-|+.+++..|+.+.....+
T Consensus 151 i~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal 215 (243)
T PRK10866 151 VRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDAL 215 (243)
T ss_pred HHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHH
Confidence 99999742 22 23457778999999999999999999999877544333
No 193
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.78 E-value=2.5e-05 Score=48.77 Aligned_cols=34 Identities=35% Similarity=0.620 Sum_probs=31.7
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHH
Q 017264 24 LYSQAIEISPNSAELFADRAQASIKLQNFTEAVA 57 (374)
Q Consensus 24 ~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~ 57 (374)
+|++||+++|+++.+|+++|.+|...|++++|++
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 4889999999999999999999999999999863
No 194
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=97.75 E-value=0.00021 Score=67.64 Aligned_cols=90 Identities=16% Similarity=0.207 Sum_probs=51.1
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCH-HHHHHHHHH
Q 017264 17 YFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEY-ETAKVALEK 95 (374)
Q Consensus 17 ~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~lg~~-~eA~~~~~~ 95 (374)
.|.+|.-.|++.....+.++..+..+|.|++.+|+|++|...+..|+..+|++++++.+++.+...+|+. +.+.+++.+
T Consensus 182 ~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~q 261 (290)
T PF04733_consen 182 KYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQ 261 (290)
T ss_dssp CCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHH
Confidence 3666666666655555555666666666666666666666666666666666666666666666666665 334455555
Q ss_pred HHhcCCCChhH
Q 017264 96 GASLAPGDSRF 106 (374)
Q Consensus 96 a~~l~p~~~~~ 106 (374)
....+|+++-+
T Consensus 262 L~~~~p~h~~~ 272 (290)
T PF04733_consen 262 LKQSNPNHPLV 272 (290)
T ss_dssp CHHHTTTSHHH
T ss_pred HHHhCCCChHH
Confidence 55566655533
No 195
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.73 E-value=0.00035 Score=65.10 Aligned_cols=82 Identities=10% Similarity=-0.025 Sum_probs=68.1
Q ss_pred HHHHHHHHHHH-HHccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChh---HHH
Q 017264 36 AELFADRAQAS-IKLQNFTEAVADANRAIELEPSM---SKAYWRKATACMKLEEYETAKVALEKGASLAPGDSR---FTN 108 (374)
Q Consensus 36 ~~~~~~ra~~~-~~l~~~~~Al~~~~~al~l~p~~---~~a~~~lg~~~~~lg~~~eA~~~~~~a~~l~p~~~~---~~~ 108 (374)
....+..|..+ ++.|+|++|+..|...+...|+. +.++|.+|.+|+..|+|++|+..|++++...|+++. +..
T Consensus 142 e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~ 221 (263)
T PRK10803 142 ANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMF 221 (263)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHH
Confidence 36677788876 56799999999999999999987 689999999999999999999999999999998653 444
Q ss_pred HHHHHHHHH
Q 017264 109 LIKECEERI 117 (374)
Q Consensus 109 ~~~~~~~~l 117 (374)
.++.+...+
T Consensus 222 klg~~~~~~ 230 (263)
T PRK10803 222 KVGVIMQDK 230 (263)
T ss_pred HHHHHHHHc
Confidence 445555433
No 196
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=97.72 E-value=0.00039 Score=70.34 Aligned_cols=111 Identities=17% Similarity=0.057 Sum_probs=99.5
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Q 017264 4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKL 83 (374)
Q Consensus 4 ~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~l 83 (374)
-++..++..--.++.++|+.++.++|+..|+...+|+.+|+++.++++.+.|...|...++..|..+-.|+.++.+-...
T Consensus 653 v~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~ 732 (913)
T KOG0495|consen 653 VWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKD 732 (913)
T ss_pred hhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHh
Confidence 34566777778899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCHHHHHHHHHHHHhcCCCChhHHHHHHHHH
Q 017264 84 EEYETAKVALEKGASLAPGDSRFTNLIKECE 114 (374)
Q Consensus 84 g~~~eA~~~~~~a~~l~p~~~~~~~~~~~~~ 114 (374)
|..-.|...|+++.--+|.+..+....-+.+
T Consensus 733 ~~~~rAR~ildrarlkNPk~~~lwle~Ir~E 763 (913)
T KOG0495|consen 733 GQLVRARSILDRARLKNPKNALLWLESIRME 763 (913)
T ss_pred cchhhHHHHHHHHHhcCCCcchhHHHHHHHH
Confidence 9999999999999999999886543333333
No 197
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.69 E-value=0.00035 Score=66.11 Aligned_cols=114 Identities=18% Similarity=0.106 Sum_probs=91.6
Q ss_pred HHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHH--------------HHhCC----
Q 017264 6 EKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRA--------------IELEP---- 67 (374)
Q Consensus 6 ~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~a--------------l~l~p---- 67 (374)
.-.|..+|..|||++|+..|+-+...+..+.++..++|.|++-+|.|.+|.+...+| .+++.
T Consensus 61 lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhlahklndEk~~ 140 (557)
T KOG3785|consen 61 LWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEKAPKTPLCIRLLFHLAHKLNDEKRI 140 (557)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCcHHHH
Confidence 346889999999999999999999887778899999999999999999998766543 22221
Q ss_pred --------CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHh
Q 017264 68 --------SMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAE 119 (374)
Q Consensus 68 --------~~~~a~~~lg~~~~~lg~~~eA~~~~~~a~~l~p~~~~~~~~~~~~~~~l~~ 119 (374)
+..+-.+.+|.++|..-.|.+|+..|.+.+.-+|+-..+-..++.|..++.-
T Consensus 141 ~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDY 200 (557)
T KOG3785|consen 141 LTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDY 200 (557)
T ss_pred HHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcch
Confidence 1234456788888888899999999999998888887777788888776543
No 198
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=97.69 E-value=0.00022 Score=49.20 Aligned_cols=49 Identities=22% Similarity=0.312 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHh
Q 017264 71 KAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAE 119 (374)
Q Consensus 71 ~a~~~lg~~~~~lg~~~eA~~~~~~a~~l~p~~~~~~~~~~~~~~~l~~ 119 (374)
+.+|.+|++++++|+|.+|+.+++.+++++|+|..+......++.++..
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i~~~i~k 50 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKELIEDKIQK 50 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHhc
Confidence 5789999999999999999999999999999999999888888887765
No 199
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.69 E-value=7.8e-05 Score=46.22 Aligned_cols=32 Identities=31% Similarity=0.537 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Q 017264 37 ELFADRAQASIKLQNFTEAVADANRAIELEPS 68 (374)
Q Consensus 37 ~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~ 68 (374)
.+|+++|.+|..+|++++|+.+|++|++++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 56777777777777777777777777777775
No 200
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=97.69 E-value=0.00051 Score=69.86 Aligned_cols=96 Identities=20% Similarity=0.119 Sum_probs=88.3
Q ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc
Q 017264 5 LEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLE 84 (374)
Q Consensus 5 l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~lg 84 (374)
++-.|..+-..|+|++|++++++||...|..+++|+.+|.+|-..|++.+|...++.|-.++..+.-..-..+..+++.|
T Consensus 197 ~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~ 276 (517)
T PF12569_consen 197 LYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAG 276 (517)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCC
Confidence 45678888899999999999999999999999999999999999999999999999999999998877788899999999
Q ss_pred CHHHHHHHHHHHHhcC
Q 017264 85 EYETAKVALEKGASLA 100 (374)
Q Consensus 85 ~~~eA~~~~~~a~~l~ 100 (374)
+.++|...+....+-+
T Consensus 277 ~~e~A~~~~~~Ftr~~ 292 (517)
T PF12569_consen 277 RIEEAEKTASLFTRED 292 (517)
T ss_pred CHHHHHHHHHhhcCCC
Confidence 9999999998766554
No 201
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.67 E-value=9.7e-05 Score=48.91 Aligned_cols=43 Identities=21% Similarity=0.271 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChhHHHHHHH
Q 017264 70 SKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKE 112 (374)
Q Consensus 70 ~~a~~~lg~~~~~lg~~~eA~~~~~~a~~l~p~~~~~~~~~~~ 112 (374)
+.+++.+|.+|..+|++++|+.+|+++++.+|++..++..++.
T Consensus 1 p~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 1 PAAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 3679999999999999999999999999999999988776654
No 202
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=97.67 E-value=0.00042 Score=70.05 Aligned_cols=91 Identities=21% Similarity=0.277 Sum_probs=49.6
Q ss_pred HHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHH
Q 017264 8 KAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYE 87 (374)
Q Consensus 8 ~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~ 87 (374)
.|..+-..++|++||..|..||..+|+|..++..++....++++|+..+..-.+.+++.|.....|+.+|++++-+|+|.
T Consensus 81 ~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~ 160 (700)
T KOG1156|consen 81 LGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYK 160 (700)
T ss_pred HHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHHHHHh
Q 017264 88 TAKVALEKGAS 98 (374)
Q Consensus 88 eA~~~~~~a~~ 98 (374)
.|...++...+
T Consensus 161 ~A~~il~ef~~ 171 (700)
T KOG1156|consen 161 MALEILEEFEK 171 (700)
T ss_pred HHHHHHHHHHH
Confidence 55555444443
No 203
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.60 E-value=0.00031 Score=66.14 Aligned_cols=95 Identities=21% Similarity=0.232 Sum_probs=72.5
Q ss_pred HHHHHHHhccCHHHHHHHHHHHHHhCC--CC----HHHHHHHHHHHHHc-cCHHHHHHHHHHHHHhCC--C----CHHHH
Q 017264 7 KKAKEAFIDDYFELAYDLYSQAIEISP--NS----AELFADRAQASIKL-QNFTEAVADANRAIELEP--S----MSKAY 73 (374)
Q Consensus 7 ~~g~~~~~~~~y~~Al~~y~~aL~~~p--~~----~~~~~~ra~~~~~l-~~~~~Al~~~~~al~l~p--~----~~~a~ 73 (374)
..+-.+++..++.+|+.+|.+|+.+.- .. +.++..+|.+|... +++++|+..|.+|+.+.. + ...++
T Consensus 79 ~~Aa~~~k~~~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~ 158 (282)
T PF14938_consen 79 EEAANCYKKGDPDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECL 158 (282)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred HHHHHHHHhhCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHH
Confidence 334444555699999999999999721 11 56888899999888 999999999999998742 1 24577
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhcCC
Q 017264 74 WRKATACMKLEEYETAKVALEKGASLAP 101 (374)
Q Consensus 74 ~~lg~~~~~lg~~~eA~~~~~~a~~l~p 101 (374)
..+|.++..+|+|++|+..|++.....-
T Consensus 159 ~~~A~l~~~l~~y~~A~~~~e~~~~~~l 186 (282)
T PF14938_consen 159 LKAADLYARLGRYEEAIEIYEEVAKKCL 186 (282)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHhh
Confidence 8899999999999999999999887543
No 204
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=97.60 E-value=0.00011 Score=69.11 Aligned_cols=81 Identities=17% Similarity=0.174 Sum_probs=67.3
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHH
Q 017264 39 FADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIA 118 (374)
Q Consensus 39 ~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~a~~l~p~~~~~~~~~~~~~~~l~ 118 (374)
+-.+|.-|+++|.|++|+.+|.+++.+.|-++..+.++|.+|+++++|..|...|..++.|+-....+......+...|+
T Consensus 100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg 179 (536)
T KOG4648|consen 100 IKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLG 179 (536)
T ss_pred HHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence 46689999999999999999999999999999999999999999999999999999999887554444443344444443
Q ss_pred h
Q 017264 119 E 119 (374)
Q Consensus 119 ~ 119 (374)
.
T Consensus 180 ~ 180 (536)
T KOG4648|consen 180 N 180 (536)
T ss_pred h
Confidence 3
No 205
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.57 E-value=0.0002 Score=44.16 Aligned_cols=32 Identities=34% Similarity=0.487 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Q 017264 37 ELFADRAQASIKLQNFTEAVADANRAIELEPS 68 (374)
Q Consensus 37 ~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~ 68 (374)
.+++.+|.+|..+|++++|+.+|++++.++|+
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence 45666666666666666666666666666665
No 206
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=97.57 E-value=0.00066 Score=64.22 Aligned_cols=113 Identities=16% Similarity=0.099 Sum_probs=83.4
Q ss_pred HHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc
Q 017264 7 KKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQ--NFTEAVADANRAIELEPSMSKAYWRKATACMKLE 84 (374)
Q Consensus 7 ~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~--~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~lg 84 (374)
-....++..++++.|.+.+..+-+.+.+.......-|.+.+..| ++.+|...|+......+..+..+..+|.|+..+|
T Consensus 136 l~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~ 215 (290)
T PF04733_consen 136 LAVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLG 215 (290)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhC
Confidence 35567888999999999998877776664433333333444444 6899999999987777788889999999999999
Q ss_pred CHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHh
Q 017264 85 EYETAKVALEKGASLAPGDSRFTNLIKECEERIAE 119 (374)
Q Consensus 85 ~~~eA~~~~~~a~~l~p~~~~~~~~~~~~~~~l~~ 119 (374)
+|++|...+..++..+|.++.....+.-|...++.
T Consensus 216 ~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk 250 (290)
T PF04733_consen 216 HYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGK 250 (290)
T ss_dssp -HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-
T ss_pred CHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCC
Confidence 99999999999999999999877777666555443
No 207
>cd06464 ACD_sHsps-like Alpha-crystallin domain (ACD) of alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=97.55 E-value=0.00037 Score=53.07 Aligned_cols=74 Identities=19% Similarity=0.284 Sum_probs=64.1
Q ss_pred cccccCCeEEEEEEeCCCCCCceEEEEeeeEEEEEEEcCC--------------CCeeeeccccccccccCceEEEEcCc
Q 017264 177 EFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPG--------------EEAYHFQPRLFGKIIPAKCRYEVLST 242 (374)
Q Consensus 177 ~W~Qt~~~V~i~i~~k~~~~~~v~v~~~~~~l~v~~~~~~--------------~~~y~~~~~L~~~I~p~~s~~~v~~~ 242 (374)
+++++++.+.|.|.++|+.++++.|.+.++.|.|+..... ...|.-.+.|...|+++..+..+...
T Consensus 1 ~i~e~~~~~~i~~~lpg~~~~~i~V~v~~~~l~I~g~~~~~~~~~~~~~~~~~~~~~f~r~~~LP~~vd~~~i~a~~~~G 80 (88)
T cd06464 1 DVYETDDAYVVEADLPGFKKEDIKVEVEDGVLTISGEREEEEEEEENYLRRERSYGSFSRSFRLPEDVDPDKIKASLENG 80 (88)
T ss_pred CcEEcCCEEEEEEECCCCCHHHeEEEEECCEEEEEEEEecccccCCcEEEEEEeCcEEEEEEECCCCcCHHHcEEEEeCC
Confidence 4788999999999999999999999999999999864321 34588888999999999999999999
Q ss_pred EEEEEEee
Q 017264 243 KVEIRLAK 250 (374)
Q Consensus 243 kiei~L~K 250 (374)
.++|++.|
T Consensus 81 ~L~I~~pk 88 (88)
T cd06464 81 VLTITLPK 88 (88)
T ss_pred EEEEEEcC
Confidence 99998865
No 208
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.54 E-value=0.0009 Score=67.06 Aligned_cols=100 Identities=18% Similarity=0.200 Sum_probs=68.8
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHH---------------------------------HHHHHHHHc
Q 017264 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFA---------------------------------DRAQASIKL 49 (374)
Q Consensus 3 ~~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~---------------------------------~ra~~~~~l 49 (374)
.+++..-+.+..+++|++|+...++.|...|++..++. .+|.|++++
T Consensus 13 ~~l~t~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~~fEKAYc~Yrl 92 (652)
T KOG2376|consen 13 EALLTDLNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINSFFFEKAYCEYRL 92 (652)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcchhhHHHHHHHHHc
Confidence 35666777777888888888888888888777744444 445555555
Q ss_pred cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChh
Q 017264 50 QNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSR 105 (374)
Q Consensus 50 ~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~a~~l~p~~~~ 105 (374)
++.++|+..+. .+++.....+..+|+.+|++|+|++|+..|+...+.+.++.+
T Consensus 93 nk~Dealk~~~---~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d 145 (652)
T KOG2376|consen 93 NKLDEALKTLK---GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQD 145 (652)
T ss_pred ccHHHHHHHHh---cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHH
Confidence 55555555554 344455567777888888888888888888887776665544
No 209
>cd06471 ACD_LpsHSP_like Group of bacterial proteins containing an alpha crystallin domain (ACD) similar to Lactobacillus plantarum (Lp) small heat shock proteins (sHsp) HSP 18.5, HSP 18.55 and HSP 19.3. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Transcription of the genes encoding Lp HSP 18.5, 18.55 and 19.3 is regulated by a variety of stresses including heat, cold and ethanol. Early growing L. plantarum cells contain elevated levels of these mRNAs which rapidly fall of as the cells enter stationary phase. Also belonging to this group is Bifidobacterium breve (Bb) HSP20 and Oenococcus oenis (syn. Leuconostoc oenos) (Oo) HSP18. Transcription of the gene encoding BbHSP20 is strongly induced following heat or osmotic shock, and that of the gene encoding OoHSP18 following heat, ethanol or acid shock. OoHSP18 is peripherally associated with the cytoplasmic me
Probab=97.54 E-value=0.00036 Score=54.25 Aligned_cols=75 Identities=13% Similarity=0.216 Sum_probs=61.0
Q ss_pred CccccccCCeEEEEEEeCCCCCCceEEEEeeeEEEEEEEcCC--------C---------CeeeeccccccccccCceEE
Q 017264 175 RHEFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPG--------E---------EAYHFQPRLFGKIIPAKCRY 237 (374)
Q Consensus 175 r~~W~Qt~~~V~i~i~~k~~~~~~v~v~~~~~~l~v~~~~~~--------~---------~~y~~~~~L~~~I~p~~s~~ 237 (374)
+.+++++++.+.|.+.++|+.++++.|++.++.|.|+..... + ..|.-.+.|. .|+++..+.
T Consensus 2 ~~di~e~~~~~~i~~~lPGv~~edi~v~~~~~~L~I~g~~~~~~~~~~~~~~~~~~e~~~g~f~r~~~lp-~v~~~~i~A 80 (93)
T cd06471 2 KTDIKETDDEYIVEADLPGFKKEDIKLDYKDGYLTISAKRDESKDEKDKKGNYIRRERYYGSFSRSFYLP-NVDEEEIKA 80 (93)
T ss_pred ceeEEEcCCEEEEEEECCCCCHHHeEEEEECCEEEEEEEEccccccccccCCEEEEeeeccEEEEEEECC-CCCHHHCEE
Confidence 579999999999999999999999999999999999764321 0 1244445665 798888899
Q ss_pred EEcCcEEEEEEee
Q 017264 238 EVLSTKVEIRLAK 250 (374)
Q Consensus 238 ~v~~~kiei~L~K 250 (374)
+.....+.|+|.|
T Consensus 81 ~~~dGvL~I~lPK 93 (93)
T cd06471 81 KYENGVLKITLPK 93 (93)
T ss_pred EEECCEEEEEEcC
Confidence 9988899999876
No 210
>PF00011 HSP20: Hsp20/alpha crystallin family This prints entry is a subset of the Pfam entry.; InterPro: IPR002068 Prokaryotic and eukaryotic organisms respond to heat shock or other environmental stress by inducing the synthesis of proteins collectively known as heat-shock proteins (hsp) []. Amongst them is a family of proteins with an average molecular weight of 20 Kd, known as the hsp20 proteins []. These seem to act as chaperones that can protect other proteins against heat-induced denaturation and aggregation. Hsp20 proteins seem to form large heterooligomeric aggregates. Structurally, this family is characterised by the presence of a conserved C-terminal domain of about 100 residues.; PDB: 2BOL_B 3N3E_B 2H50_P 2H53_F 2BYU_L 1GME_D 3VQM_J 3VQK_E 3VQL_A 3AAC_A ....
Probab=97.51 E-value=0.00057 Score=53.95 Aligned_cols=77 Identities=16% Similarity=0.251 Sum_probs=61.3
Q ss_pred cccccCCeEEEEEEeCCCCCCceEEEEeeeEEEEEEEcC----CC---------CeeeeccccccccccCceEEEEcCcE
Q 017264 177 EFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVP----GE---------EAYHFQPRLFGKIIPAKCRYEVLSTK 243 (374)
Q Consensus 177 ~W~Qt~~~V~i~i~~k~~~~~~v~v~~~~~~l~v~~~~~----~~---------~~y~~~~~L~~~I~p~~s~~~v~~~k 243 (374)
||+++++.+.|.+-++|+.++++.|.+..+.|.|+.... ++ ..|.-.+.|...|+++..+.++....
T Consensus 1 di~e~~~~~~i~~~lpG~~~edi~I~~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~f~r~~~lP~~vd~~~i~a~~~~Gv 80 (102)
T PF00011_consen 1 DIKEDEDEYIIKVDLPGFDKEDIKIKVDDNKLVISGKRKEEEEDDRYYRSERRYGSFERSIRLPEDVDPDKIKASYENGV 80 (102)
T ss_dssp EEEESSSEEEEEEE-TTS-GGGEEEEEETTEEEEEEEEEGEECTTCEEEE-S-SEEEEEEEE-STTB-GGG-EEEETTSE
T ss_pred CeEECCCEEEEEEECCCCChHHEEEEEecCccceeceeeeeeeeeeeeecccccceEEEEEcCCCcCCcceEEEEecCCE
Confidence 689999999999999999999999999999998886432 11 24666788999999999999999999
Q ss_pred EEEEEeecCC
Q 017264 244 VEIRLAKAEP 253 (374)
Q Consensus 244 iei~L~K~~~ 253 (374)
+.|++.|...
T Consensus 81 L~I~~pk~~~ 90 (102)
T PF00011_consen 81 LTITIPKKEE 90 (102)
T ss_dssp EEEEEEBSSS
T ss_pred EEEEEEcccc
Confidence 9999999754
No 211
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.49 E-value=0.0013 Score=65.95 Aligned_cols=40 Identities=23% Similarity=0.262 Sum_probs=25.1
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Q 017264 74 WRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEER 116 (374)
Q Consensus 74 ~~lg~~~~~lg~~~eA~~~~~~a~~l~p~~~~~~~~~~~~~~~ 116 (374)
|-+|.|+|++++.++|+.+++ .+++.+..+....+++..+
T Consensus 83 fEKAYc~Yrlnk~Dealk~~~---~~~~~~~~ll~L~AQvlYr 122 (652)
T KOG2376|consen 83 FEKAYCEYRLNKLDEALKTLK---GLDRLDDKLLELRAQVLYR 122 (652)
T ss_pred HHHHHHHHHcccHHHHHHHHh---cccccchHHHHHHHHHHHH
Confidence 677888888888888888888 2344444344444443333
No 212
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.49 E-value=0.00058 Score=69.66 Aligned_cols=89 Identities=16% Similarity=0.105 Sum_probs=80.7
Q ss_pred cCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHH
Q 017264 16 DYFELAYDLYSQAIEI--SPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVAL 93 (374)
Q Consensus 16 ~~y~~Al~~y~~aL~~--~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~ 93 (374)
.+...|.....+++.+ ++.++.+|..+|..+...|++++|...+++|+.++| +..+|+.+|.++...|++++|+..|
T Consensus 398 ~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~ 476 (517)
T PRK10153 398 KQLAALSTELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAY 476 (517)
T ss_pred HHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 4567778888887774 788888999999999999999999999999999999 4789999999999999999999999
Q ss_pred HHHHhcCCCChh
Q 017264 94 EKGASLAPGDSR 105 (374)
Q Consensus 94 ~~a~~l~p~~~~ 105 (374)
+++++++|.++.
T Consensus 477 ~~A~~L~P~~pt 488 (517)
T PRK10153 477 STAFNLRPGENT 488 (517)
T ss_pred HHHHhcCCCCch
Confidence 999999999885
No 213
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=97.47 E-value=0.0024 Score=52.46 Aligned_cols=86 Identities=16% Similarity=0.229 Sum_probs=73.5
Q ss_pred CHHHHHHHHHHHHHcc---CHHHHHHHHHHHHH-hCC-CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChhHHHH
Q 017264 35 SAELFADRAQASIKLQ---NFTEAVADANRAIE-LEP-SMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNL 109 (374)
Q Consensus 35 ~~~~~~~ra~~~~~l~---~~~~Al~~~~~al~-l~p-~~~~a~~~lg~~~~~lg~~~eA~~~~~~a~~l~p~~~~~~~~ 109 (374)
.....+++|.|+.+.. +..+.+..++..+. -+| ...++.|.+|+.++++++|+.|+.++..+++.+|+|.++...
T Consensus 31 s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~L 110 (149)
T KOG3364|consen 31 SKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALEL 110 (149)
T ss_pred hHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHH
Confidence 3567889999998864 56678888888886 444 356789999999999999999999999999999999999998
Q ss_pred HHHHHHHHHhh
Q 017264 110 IKECEERIAEE 120 (374)
Q Consensus 110 ~~~~~~~l~~~ 120 (374)
...++.++...
T Consensus 111 k~~ied~itke 121 (149)
T KOG3364|consen 111 KETIEDKITKE 121 (149)
T ss_pred HHHHHHHHhhc
Confidence 88888887765
No 214
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.44 E-value=8.5e-05 Score=71.38 Aligned_cols=97 Identities=13% Similarity=0.173 Sum_probs=72.9
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC----CC--CH
Q 017264 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNS------AELFADRAQASIKLQNFTEAVADANRAIELE----PS--MS 70 (374)
Q Consensus 3 ~~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~------~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~----p~--~~ 70 (374)
+.+-+.||.||-.|+|+.||.+-..-|.+.... -.++.++|.||.-+|+|+.|+++|.+++.+. .. -+
T Consensus 196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEA 275 (639)
T KOG1130|consen 196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEA 275 (639)
T ss_pred chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHH
Confidence 455678888999999999998877766663222 3578888999999999999999888776554 22 24
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Q 017264 71 KAYWRKATACMKLEEYETAKVALEKGASL 99 (374)
Q Consensus 71 ~a~~~lg~~~~~lg~~~eA~~~~~~a~~l 99 (374)
...|.+|..|+-+.+|..|+.++++-+.+
T Consensus 276 QscYSLgNtytll~e~~kAI~Yh~rHLaI 304 (639)
T KOG1130|consen 276 QSCYSLGNTYTLLKEVQKAITYHQRHLAI 304 (639)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 56778888888888888888888775443
No 215
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.40 E-value=0.0006 Score=63.20 Aligned_cols=63 Identities=16% Similarity=0.156 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q 017264 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIEL 65 (374)
Q Consensus 3 ~~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l 65 (374)
+.+.+.|..+|+.|+|++|++-|+.|++....++.+-+++|.|+++.++|..|+......+..
T Consensus 145 d~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniALaHy~~~qyasALk~iSEIieR 207 (459)
T KOG4340|consen 145 DGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAHYSSRQYASALKHISEIIER 207 (459)
T ss_pred chhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence 345566777777777777777777777777777777777777777777777777766655543
No 216
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=97.40 E-value=0.0013 Score=54.87 Aligned_cols=70 Identities=23% Similarity=0.232 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChh
Q 017264 36 AELFADRAQASIKLQNFTEAVADANRAIELEPS---MSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSR 105 (374)
Q Consensus 36 ~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~---~~~a~~~lg~~~~~lg~~~eA~~~~~~a~~l~p~~~~ 105 (374)
+..++..|...++.|+|.+|+..++.+....|. -..+.+.+|.+|+..++|.+|+..+++.++|+|.++.
T Consensus 10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~ 82 (142)
T PF13512_consen 10 PQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPN 82 (142)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCC
Confidence 567888999999999999999999999998874 4679999999999999999999999999999999885
No 217
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.39 E-value=0.0004 Score=68.16 Aligned_cols=112 Identities=13% Similarity=0.072 Sum_probs=90.9
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHH-HHhCCC--------CHHHHHHHHHHHHHccCHHHHHHHHHHHHHh---------
Q 017264 4 DLEKKAKEAFIDDYFELAYDLYSQA-IEISPN--------SAELFADRAQASIKLQNFTEAVADANRAIEL--------- 65 (374)
Q Consensus 4 ~l~~~g~~~~~~~~y~~Al~~y~~a-L~~~p~--------~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l--------- 65 (374)
.++-+++..|..|+|..|.+++... +...+. ...++.++|.++++++.|..+.-+|.+|++.
T Consensus 242 ~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~ 321 (696)
T KOG2471|consen 242 ALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGL 321 (696)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccC
Confidence 5677889999999999999988552 223333 2356688999999999999999999999961
Q ss_pred CC---------CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Q 017264 66 EP---------SMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEE 115 (374)
Q Consensus 66 ~p---------~~~~a~~~lg~~~~~lg~~~eA~~~~~~a~~l~p~~~~~~~~~~~~~~ 115 (374)
.| ..-+.+|++|+.|...|+.-.|.+||.++......++.++..++.|--
T Consensus 322 ~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCi 380 (696)
T KOG2471|consen 322 KPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCI 380 (696)
T ss_pred CCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 11 245789999999999999999999999999999999987777766543
No 218
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=97.33 E-value=0.0015 Score=63.21 Aligned_cols=93 Identities=18% Similarity=0.272 Sum_probs=77.7
Q ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHhCCC--------C----------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Q 017264 5 LEKKAKEAFIDDYFELAYDLYSQAIEISPN--------S----------AELFADRAQASIKLQNFTEAVADANRAIELE 66 (374)
Q Consensus 5 l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~--------~----------~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~ 66 (374)
....|...|++++|..|+-.|..||++... . ..+-..+..||+++++.+.|+....+.|.++
T Consensus 179 AL~das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~ln 258 (569)
T PF15015_consen 179 ALKDASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINLN 258 (569)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhcC
Confidence 456677888888888888888888887221 1 2345678999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 017264 67 PSMSKAYWRKATACMKLEEYETAKVALEKGA 97 (374)
Q Consensus 67 p~~~~a~~~lg~~~~~lg~~~eA~~~~~~a~ 97 (374)
|....-|++.|.++..+.+|.+|...+-.+.
T Consensus 259 P~~frnHLrqAavfR~LeRy~eAarSamia~ 289 (569)
T PF15015_consen 259 PSYFRNHLRQAAVFRRLERYSEAARSAMIAD 289 (569)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999987766543
No 219
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=97.30 E-value=0.0083 Score=57.70 Aligned_cols=119 Identities=14% Similarity=0.105 Sum_probs=100.7
Q ss_pred hHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH
Q 017264 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPS-MSKAYWRKATAC 80 (374)
Q Consensus 2 a~~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~-~~~a~~~lg~~~ 80 (374)
++.....|..-+..|+|..|..+..++-+..+.-...|..-|.+-.++|+++.|-++..++-++.++ ...+.+.++.++
T Consensus 84 a~~~~~egl~~l~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarll 163 (400)
T COG3071 84 ARKALNEGLLKLFEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLL 163 (400)
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHH
Confidence 3456778888999999999999999988877777777887888889999999999999999999543 456788899999
Q ss_pred HHhcCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhh
Q 017264 81 MKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE 120 (374)
Q Consensus 81 ~~lg~~~eA~~~~~~a~~l~p~~~~~~~~~~~~~~~l~~~ 120 (374)
...|+|..|......+++..|.++.+.....++.-+++.-
T Consensus 164 l~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~ 203 (400)
T COG3071 164 LNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAW 203 (400)
T ss_pred HhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccH
Confidence 9999999999999999999999999888888777665543
No 220
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=97.29 E-value=0.00037 Score=65.91 Aligned_cols=117 Identities=20% Similarity=0.256 Sum_probs=100.6
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHHhCC---CC----------------HHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q 017264 4 DLEKKAKEAFIDDYFELAYDLYSQAIEISP---NS----------------AELFADRAQASIKLQNFTEAVADANRAIE 64 (374)
Q Consensus 4 ~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p---~~----------------~~~~~~ra~~~~~l~~~~~Al~~~~~al~ 64 (374)
...+.|+..++.++|..|+.-|.++++... .. ...+.+.+.|-++++.+..|+.....+++
T Consensus 224 ~~k~~~~~~~kk~~~~~a~~k~~k~~r~~~~~s~~~~~e~~~~~~~~~~~r~~~~~n~~~~~lk~~~~~~a~~~~~~~~~ 303 (372)
T KOG0546|consen 224 KKKNIGNKEFKKQRYREALAKYRKALRYLSEQSRDREKEQENRIPPLRELRFSIRRNLAAVGLKVKGRGGARFRTNEALR 303 (372)
T ss_pred hhhccchhhhhhccHhHHHHHHHHHhhhhcccccccccccccccccccccccccccchHHhcccccCCCcceeccccccc
Confidence 345678899999999999999999887622 10 23566678899999999999999999999
Q ss_pred hCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhh
Q 017264 65 LEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE 120 (374)
Q Consensus 65 l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~a~~l~p~~~~~~~~~~~~~~~l~~~ 120 (374)
.++....+||+++..+..+.++++|+..+..+....|++..+...+..+..++...
T Consensus 304 ~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~~~~~~~~ 359 (372)
T KOG0546|consen 304 DERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELENVRQKKKQY 359 (372)
T ss_pred cChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHHHhhhHHHHH
Confidence 99999999999999999999999999999999999999999888887777766554
No 221
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.28 E-value=0.00083 Score=64.77 Aligned_cols=118 Identities=14% Similarity=0.146 Sum_probs=89.8
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHHh----C--CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC------CCH
Q 017264 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEI----S--PNSAELFADRAQASIKLQNFTEAVADANRAIELEP------SMS 70 (374)
Q Consensus 3 ~~l~~~g~~~~~~~~y~~Al~~y~~aL~~----~--p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p------~~~ 70 (374)
++.-+.||.+.-.|+|+.|+++|..++.+ . ...+...+.+|..|.-++.++.||.+..+-+.+.. ...
T Consensus 236 RA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~ 315 (639)
T KOG1130|consen 236 RAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGEL 315 (639)
T ss_pred HhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Confidence 34567899999999999999999987766 2 22256778899999999999999999988776653 356
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-----CC-ChhHHHHHHHHHHHHHhh
Q 017264 71 KAYWRKATACMKLEEYETAKVALEKGASLA-----PG-DSRFTNLIKECEERIAEE 120 (374)
Q Consensus 71 ~a~~~lg~~~~~lg~~~eA~~~~~~a~~l~-----p~-~~~~~~~~~~~~~~l~~~ 120 (374)
.+++.+|.++..+|..+.|+.+.++.+++. +. .......+..+...++..
T Consensus 316 RacwSLgna~~alg~h~kAl~fae~hl~~s~ev~D~sgelTar~Nlsdl~~~lG~~ 371 (639)
T KOG1130|consen 316 RACWSLGNAFNALGEHRKALYFAELHLRSSLEVNDTSGELTARDNLSDLILELGQE 371 (639)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCcchhhhhhhhhHHHHHHhCCC
Confidence 789999999999999999999988877653 21 223444444454444443
No 222
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.28 E-value=0.0057 Score=64.13 Aligned_cols=107 Identities=12% Similarity=0.024 Sum_probs=90.5
Q ss_pred HHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHH
Q 017264 8 KAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYE 87 (374)
Q Consensus 8 ~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~ 87 (374)
--..+...++|..|+....+.++..|+...+....|..+.++|++++|...++..-.+.+++-..+-.+-.+|..+++++
T Consensus 15 pi~d~ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d 94 (932)
T KOG2053|consen 15 PIYDLLDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLD 94 (932)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhh
Confidence 34466788999999999999999999999999999999999999999997776666677777778888899999999999
Q ss_pred HHHHHHHHHHhcCCCChhHHHHHHHHHH
Q 017264 88 TAKVALEKGASLAPGDSRFTNLIKECEE 115 (374)
Q Consensus 88 eA~~~~~~a~~l~p~~~~~~~~~~~~~~ 115 (374)
+|..+|+++..-+|. -+....+-.+..
T Consensus 95 ~~~~~Ye~~~~~~P~-eell~~lFmayv 121 (932)
T KOG2053|consen 95 EAVHLYERANQKYPS-EELLYHLFMAYV 121 (932)
T ss_pred HHHHHHHHHHhhCCc-HHHHHHHHHHHH
Confidence 999999999999998 554444444433
No 223
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=97.27 E-value=0.01 Score=50.79 Aligned_cols=98 Identities=27% Similarity=0.277 Sum_probs=54.0
Q ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHH-HHHHccCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHH
Q 017264 5 LEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQ-ASIKLQNFTEAVADANRAIELEP---SMSKAYWRKATAC 80 (374)
Q Consensus 5 l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~-~~~~l~~~~~Al~~~~~al~l~p---~~~~a~~~lg~~~ 80 (374)
+...|......++|..|+..+..++...+.+.......+. ++...+++..|+..+.+++...+ .....++.++..+
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (291)
T COG0457 98 LLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALL 177 (291)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHH
Confidence 3445555555555666666666666555554333333444 55566666666666666655444 2344444455555
Q ss_pred HHhcCHHHHHHHHHHHHhcCCC
Q 017264 81 MKLEEYETAKVALEKGASLAPG 102 (374)
Q Consensus 81 ~~lg~~~eA~~~~~~a~~l~p~ 102 (374)
...+++..|+..+.+++...+.
T Consensus 178 ~~~~~~~~a~~~~~~~~~~~~~ 199 (291)
T COG0457 178 EALGRYEEALELLEKALKLNPD 199 (291)
T ss_pred HHhcCHHHHHHHHHHHHhhCcc
Confidence 5566666666666666655555
No 224
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=97.21 E-value=0.00094 Score=59.34 Aligned_cols=72 Identities=18% Similarity=0.171 Sum_probs=67.5
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChhHH
Q 017264 36 AELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFT 107 (374)
Q Consensus 36 ~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~a~~l~p~~~~~~ 107 (374)
+.+++.||..|-.+|-..-|.-||.+++.+.|..+.++-.+|+.+...|+|+.|.+.|...++++|...-..
T Consensus 65 A~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~ 136 (297)
T COG4785 65 AQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAH 136 (297)
T ss_pred HHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHH
Confidence 678899999999999999999999999999999999999999999999999999999999999999876433
No 225
>PRK10941 hypothetical protein; Provisional
Probab=97.21 E-value=0.0039 Score=58.16 Aligned_cols=77 Identities=12% Similarity=0.099 Sum_probs=67.7
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChhHHHHHHHH
Q 017264 37 ELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKEC 113 (374)
Q Consensus 37 ~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~a~~l~p~~~~~~~~~~~~ 113 (374)
..+.++=.+|.+.++++.|+.+.+.++.++|+++.-+.-+|.+|+++|.+..|...|+..++..|+++.......++
T Consensus 182 Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql 258 (269)
T PRK10941 182 KLLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQI 258 (269)
T ss_pred HHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHH
Confidence 45666778889999999999999999999999999888899999999999999999999999999998755444443
No 226
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=97.20 E-value=0.0029 Score=54.74 Aligned_cols=69 Identities=19% Similarity=0.225 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHhc----------cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc-----------CHHHHHHHHHH
Q 017264 3 TDLEKKAKEAFID----------DYFELAYDLYSQAIEISPNSAELFADRAQASIKLQ-----------NFTEAVADANR 61 (374)
Q Consensus 3 ~~l~~~g~~~~~~----------~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~-----------~~~~Al~~~~~ 61 (374)
+.|.+-|.++... .-+++|+.-|.+||.++|+...++.++|.+|..++ .|++|..+|.+
T Consensus 26 dnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~Fqk 105 (186)
T PF06552_consen 26 DNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQK 105 (186)
T ss_dssp HHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHH
Confidence 4455555555443 34688999999999999999999999999998863 37788889999
Q ss_pred HHHhCCCCHH
Q 017264 62 AIELEPSMSK 71 (374)
Q Consensus 62 al~l~p~~~~ 71 (374)
|+.++|++..
T Consensus 106 Av~~~P~ne~ 115 (186)
T PF06552_consen 106 AVDEDPNNEL 115 (186)
T ss_dssp HHHH-TT-HH
T ss_pred HHhcCCCcHH
Confidence 9999998853
No 227
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=97.15 E-value=0.0007 Score=41.73 Aligned_cols=32 Identities=31% Similarity=0.476 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCC
Q 017264 71 KAYWRKATACMKLEEYETAKVALEKGASLAPG 102 (374)
Q Consensus 71 ~a~~~lg~~~~~lg~~~eA~~~~~~a~~l~p~ 102 (374)
++|+.+|.+|..+|++++|+.+|+++++++|+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 45666666666666666666666666666653
No 228
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.12 E-value=0.01 Score=51.94 Aligned_cols=98 Identities=13% Similarity=0.040 Sum_probs=77.3
Q ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 017264 5 LEKKAKEAFIDDYFELAYDLYSQAIEISPNS---AELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACM 81 (374)
Q Consensus 5 l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~---~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~ 81 (374)
....|..++..+++++|+..+..+|....+. ..+-.++|.+.+.++.+++|+..+.....-+ -.+.....+|.++.
T Consensus 92 aL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~-w~~~~~elrGDill 170 (207)
T COG2976 92 ALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEES-WAAIVAELRGDILL 170 (207)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccccc-HHHHHHHHhhhHHH
Confidence 4678899999999999999999999764433 3566778999999999999998664432211 12234567899999
Q ss_pred HhcCHHHHHHHHHHHHhcCCCC
Q 017264 82 KLEEYETAKVALEKGASLAPGD 103 (374)
Q Consensus 82 ~lg~~~eA~~~~~~a~~l~p~~ 103 (374)
..|+-.+|+..|+++++.+++.
T Consensus 171 ~kg~k~~Ar~ay~kAl~~~~s~ 192 (207)
T COG2976 171 AKGDKQEARAAYEKALESDASP 192 (207)
T ss_pred HcCchHHHHHHHHHHHHccCCh
Confidence 9999999999999999988543
No 229
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=97.11 E-value=0.0051 Score=48.97 Aligned_cols=92 Identities=22% Similarity=0.239 Sum_probs=76.9
Q ss_pred HHHHHHhccCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcc-----------CHHHHHHHHHHHHHhCCCCHHHH
Q 017264 8 KAKEAFIDDYFELAYDLYSQAIEISPNSA---ELFADRAQASIKLQ-----------NFTEAVADANRAIELEPSMSKAY 73 (374)
Q Consensus 8 ~g~~~~~~~~y~~Al~~y~~aL~~~p~~~---~~~~~ra~~~~~l~-----------~~~~Al~~~~~al~l~p~~~~a~ 73 (374)
+|..++.+||+-+|+++....+...+++. .++..-|.++.++. -+-.+++.|.++..+.|..+..+
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L 81 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHSL 81 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHHH
Confidence 57889999999999999999999977765 55666677776652 24568999999999999999999
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhc
Q 017264 74 WRKATACMKLEEYETAKVALEKGASL 99 (374)
Q Consensus 74 ~~lg~~~~~lg~~~eA~~~~~~a~~l 99 (374)
|.+|.-+-....|++++.-.++++..
T Consensus 82 ~~la~~l~s~~~Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 82 FELASQLGSVKYYKKAVKKAKRGLSV 107 (111)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence 99999888888899998888888764
No 230
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=97.11 E-value=0.013 Score=50.23 Aligned_cols=92 Identities=27% Similarity=0.366 Sum_probs=72.0
Q ss_pred HHHhccCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCH
Q 017264 11 EAFIDDYFELAYDLYSQAIEISP---NSAELFADRAQASIKLQNFTEAVADANRAIELEPS-MSKAYWRKATACMKLEEY 86 (374)
Q Consensus 11 ~~~~~~~y~~Al~~y~~aL~~~p---~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~-~~~a~~~lg~~~~~lg~~ 86 (374)
.++..++++.|+..|.+++..++ .....+..++..+...+++..|+..+.+++...+. ....+..++.++...+.+
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (291)
T COG0457 139 ALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKY 218 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccH
Confidence 67788888888888888877666 34556666666677778888888888888888887 677888888888888888
Q ss_pred HHHHHHHHHHHhcCCC
Q 017264 87 ETAKVALEKGASLAPG 102 (374)
Q Consensus 87 ~eA~~~~~~a~~l~p~ 102 (374)
..|...+..++...|.
T Consensus 219 ~~a~~~~~~~~~~~~~ 234 (291)
T COG0457 219 EEALEYYEKALELDPD 234 (291)
T ss_pred HHHHHHHHHHHhhCcc
Confidence 8888888888887776
No 231
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.10 E-value=0.0048 Score=62.54 Aligned_cols=95 Identities=18% Similarity=0.152 Sum_probs=85.8
Q ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 017264 5 LEKKAKEAFIDDYFELAYDLYSQAIEISPNS------AELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKAT 78 (374)
Q Consensus 5 l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~------~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~ 78 (374)
+++.|..+|+.++|..+++.|...++..|++ +....+++.||+.+.+.+.|++.+..|-+.+|.++-..+....
T Consensus 357 LWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~ 436 (872)
T KOG4814|consen 357 LWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLMLQ 436 (872)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHHH
Confidence 6789999999999999999999999987766 4567788999999999999999999999999999999999999
Q ss_pred HHHHhcCHHHHHHHHHHHHhc
Q 017264 79 ACMKLEEYETAKVALEKGASL 99 (374)
Q Consensus 79 ~~~~lg~~~eA~~~~~~a~~l 99 (374)
+....+.-.+|+.++......
T Consensus 437 ~~~~E~~Se~AL~~~~~~~s~ 457 (872)
T KOG4814|consen 437 SFLAEDKSEEALTCLQKIKSS 457 (872)
T ss_pred HHHHhcchHHHHHHHHHHHhh
Confidence 999999999999998876543
No 232
>PRK10941 hypothetical protein; Provisional
Probab=97.08 E-value=0.0056 Score=57.11 Aligned_cols=77 Identities=17% Similarity=0.125 Sum_probs=69.4
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 017264 4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATAC 80 (374)
Q Consensus 4 ~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~ 80 (374)
-+.+.-..+.+.++|+.|+...+..|.+.|+++.-+..||.+|.++|.+..|+.|++..++..|+.+.+-.-+.++.
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~ 259 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIH 259 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHH
Confidence 34566778999999999999999999999999999999999999999999999999999999999988776665543
No 233
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.08 E-value=0.0047 Score=55.94 Aligned_cols=71 Identities=23% Similarity=0.301 Sum_probs=65.1
Q ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHH
Q 017264 5 LEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWR 75 (374)
Q Consensus 5 l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~ 75 (374)
+.+-...++..|+|-+++++.+..|..+|.|..+|+.||.++...=+.++|.+|+.++|+++|....+.-+
T Consensus 233 llNy~QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasvVsr 303 (329)
T KOG0545|consen 233 LLNYCQCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASVVSR 303 (329)
T ss_pred HHhHHHHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHHHHH
Confidence 45778899999999999999999999999999999999999999999999999999999999987665444
No 234
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.03 E-value=0.0051 Score=56.61 Aligned_cols=82 Identities=16% Similarity=0.162 Sum_probs=71.1
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChh---HHHHHHH
Q 017264 39 FADRAQASIKLQNFTEAVADANRAIELEPS---MSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSR---FTNLIKE 112 (374)
Q Consensus 39 ~~~ra~~~~~l~~~~~Al~~~~~al~l~p~---~~~a~~~lg~~~~~lg~~~eA~~~~~~a~~l~p~~~~---~~~~~~~ 112 (374)
+++.|.-+++.|+|..|.+.|..-+...|+ .++++|=||.++|.+|+|.+|...|..+.+-.|+.+. ...-++.
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~ 223 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV 223 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence 788999999999999999999999999986 4789999999999999999999999999999888764 4555566
Q ss_pred HHHHHHhh
Q 017264 113 CEERIAEE 120 (374)
Q Consensus 113 ~~~~l~~~ 120 (374)
|..++++.
T Consensus 224 ~~~~l~~~ 231 (262)
T COG1729 224 SLGRLGNT 231 (262)
T ss_pred HHHHhcCH
Confidence 66665554
No 235
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=97.01 E-value=0.059 Score=45.98 Aligned_cols=109 Identities=15% Similarity=-0.008 Sum_probs=87.3
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Q 017264 4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKL 83 (374)
Q Consensus 4 ~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~l 83 (374)
.|+.........++.+++..++...--+.|+.+++-..-|..++..|++.+|+..++.+....|..+-+--.++.|++.+
T Consensus 12 gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~ 91 (160)
T PF09613_consen 12 GLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYAL 91 (160)
T ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHc
Confidence 56778888999999999999998888889999999999999999999999999999999999999998888999999999
Q ss_pred cCHHHHHHHHHHHHhcCCCChhHHHHHHHHH
Q 017264 84 EEYETAKVALEKGASLAPGDSRFTNLIKECE 114 (374)
Q Consensus 84 g~~~eA~~~~~~a~~l~p~~~~~~~~~~~~~ 114 (374)
++..==. +-..+++..+ ++.....++.+.
T Consensus 92 ~D~~Wr~-~A~evle~~~-d~~a~~Lv~~Ll 120 (160)
T PF09613_consen 92 GDPSWRR-YADEVLESGA-DPDARALVRALL 120 (160)
T ss_pred CChHHHH-HHHHHHhcCC-ChHHHHHHHHHH
Confidence 9864211 1222333333 455555444443
No 236
>cd06479 ACD_HspB7_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB7, also known as cardiovascular small heat shock protein (cvHsp), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB7 is a 25-kDa protein, preferentially expressed in heart and skeletal muscle. It binds the cytoskeleton protein alpha-filamin (also known as actin-binding protein 280). The expression of HspB7 is increased during rat muscle aging. Its expression is also modulated in obesity implicating this protein in this and related metabolic disorders. As the human gene encoding HspB7 is mapped to chromosome 1p36.23-p34.3 it is a positional candidate for several dystrophies and myopathies.
Probab=96.92 E-value=0.0051 Score=46.51 Aligned_cols=72 Identities=8% Similarity=0.122 Sum_probs=59.8
Q ss_pred cccCCeEEEEEEeCCCCCCceEEEEeeeEEEEEEEcC--CC---CeeeeccccccccccCceEEEE-cCcEEEEEEee
Q 017264 179 YQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVP--GE---EAYHFQPRLFGKIIPAKCRYEV-LSTKVEIRLAK 250 (374)
Q Consensus 179 ~Qt~~~V~i~i~~k~~~~~~v~v~~~~~~l~v~~~~~--~~---~~y~~~~~L~~~I~p~~s~~~v-~~~kiei~L~K 250 (374)
+.+++.+.|.+.++|+.++++.|++..+.|+|+.... .+ ..|.-.+.|...|+++..+-.+ ....+.|++.+
T Consensus 4 ~e~~~~~~v~~dlpG~~pedi~V~v~~~~L~I~ger~~~~~~~~g~F~R~~~LP~~vd~e~v~A~l~~~GvL~I~~~~ 81 (81)
T cd06479 4 KTLGDTYQFAVDVSDFSPEDIIVTTSNNQIEVHAEKLASDGTVMNTFTHKCQLPEDVDPTSVSSSLGEDGTLTIKARR 81 (81)
T ss_pred cCcCCeEEEEEECCCCCHHHeEEEEECCEEEEEEEEeccCCCEEEEEEEEEECCCCcCHHHeEEEecCCCEEEEEecC
Confidence 5688999999999999999999999999999987431 22 2466678899999999999887 67789888864
No 237
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=96.89 E-value=0.016 Score=54.51 Aligned_cols=100 Identities=14% Similarity=0.096 Sum_probs=82.2
Q ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Q 017264 5 LEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIK-LQNFTEAVADANRAIELEPSMSKAYWRKATACMKL 83 (374)
Q Consensus 5 l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~-l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~l 83 (374)
+....+.+.+.+..+.|...|.+|++..+.+..+|...|...+. .++...|...|+.++...|.+...|+.+...+..+
T Consensus 4 ~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~~ 83 (280)
T PF05843_consen 4 WIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIKL 83 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHh
Confidence 45566677777779999999999996666677888888888666 46666699999999999999999999999999999
Q ss_pred cCHHHHHHHHHHHHhcCCCCh
Q 017264 84 EEYETAKVALEKGASLAPGDS 104 (374)
Q Consensus 84 g~~~eA~~~~~~a~~l~p~~~ 104 (374)
++.+.|...|++++..-+.+.
T Consensus 84 ~d~~~aR~lfer~i~~l~~~~ 104 (280)
T PF05843_consen 84 NDINNARALFERAISSLPKEK 104 (280)
T ss_dssp T-HHHHHHHHHHHCCTSSCHH
T ss_pred CcHHHHHHHHHHHHHhcCchh
Confidence 999999999999998877766
No 238
>KOG4379 consensus Uncharacterized conserved protein (tumor antigen CML66 in humans) [Function unknown]
Probab=96.88 E-value=0.0017 Score=62.85 Aligned_cols=85 Identities=15% Similarity=0.241 Sum_probs=70.4
Q ss_pred CccccccCCeEEEEEEeCC-CCCCceEEEEeeeEEEEEEEcCCCCeeeeccccccccccCceEEEEcC-cEEEEEEeecC
Q 017264 175 RHEFYQKPEEVVVTVFAKG-IPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVLS-TKVEIRLAKAE 252 (374)
Q Consensus 175 r~~W~Qt~~~V~i~i~~k~-~~~~~v~v~~~~~~l~v~~~~~~~~~y~~~~~L~~~I~p~~s~~~v~~-~kiei~L~K~~ 252 (374)
-|-|.|+++.|.|++.++. ...+++.|.+-.+.|-+.+. .+-.|+..||..|.-+.|.+.|.- .++|+.|.|++
T Consensus 291 ~y~w~qt~d~~~~~~~~p~~~~~~~i~Iq~~~~~v~v~~~----dh~~~~g~lyasv~he~s~~ii~ean~Le~sl~K~d 366 (596)
T KOG4379|consen 291 SYSWSQTDDNVLIRFNVPSTASAKEINIQGSKTTVVVKHL----DHVIFDGELYASVGHELSAFIIAEANGLELSLTKAD 366 (596)
T ss_pred cceeeeccCcceEEEecccccccceEEEEecCceEEEEee----eeEEeccchhhhccccchhhhhhhhccceEEEeecc
Confidence 4899999999999998865 45688888888887766653 245678899999999999999977 69999999995
Q ss_pred -CCCCCccccCC
Q 017264 253 -PIQWSSLEFSK 263 (374)
Q Consensus 253 -~~~W~~L~~~~ 263 (374)
...|++|-..+
T Consensus 367 e~~twprL~~~d 378 (596)
T KOG4379|consen 367 EIQTWPRLFAQD 378 (596)
T ss_pred cccccchheeec
Confidence 48999998554
No 239
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=96.87 E-value=0.002 Score=39.63 Aligned_cols=32 Identities=25% Similarity=0.435 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Q 017264 37 ELFADRAQASIKLQNFTEAVADANRAIELEPS 68 (374)
Q Consensus 37 ~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~ 68 (374)
.+|+.+|.+|..+|++++|+..|+++++++|+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 45667777777777777777777777777663
No 240
>cd06475 ACD_HspB1_like Alpha crystallin domain (ACD) found in mammalian small (s)heat shock protein (Hsp)-27 (also denoted HspB1 in human) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Hsp27 shows enhanced synthesis in response to stress. It is a molecular chaperone which interacts with a large number of different proteins. It is found in many types of human cells including breast, uterus, cervix, platelets and cancer cells. Hsp27 has diverse cellular functions including, chaperoning, regulation of actin polymerization, keratinocyte differentiation, regulation of inflammatory pathways in keratinocytes, and protection from oxidative stress through modulating glutathione levels. It is also a subunit of AUF1-containing protein complexes. It has been linked to several transduction pathways regulating cellular functions including differentiat
Probab=96.87 E-value=0.0052 Score=47.06 Aligned_cols=72 Identities=8% Similarity=0.101 Sum_probs=59.8
Q ss_pred cccccCCeEEEEEEeCCCCCCceEEEEeeeEEEEEEEcCC----C----CeeeeccccccccccCceEEEEc-CcEEEEE
Q 017264 177 EFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPG----E----EAYHFQPRLFGKIIPAKCRYEVL-STKVEIR 247 (374)
Q Consensus 177 ~W~Qt~~~V~i~i~~k~~~~~~v~v~~~~~~l~v~~~~~~----~----~~y~~~~~L~~~I~p~~s~~~v~-~~kiei~ 247 (374)
+++.+++.+.|.+.++|+.++++.|++.++.|.|+..... + ..|.-.+.|...|++++.+-... ...+.|+
T Consensus 4 ~i~e~~~~~~v~~dlPG~~~edi~V~v~~~~L~I~g~~~~~~~~~~~~~~~f~R~f~LP~~vd~~~v~A~~~~dGvL~I~ 83 (86)
T cd06475 4 EIRQTADRWKVSLDVNHFAPEELVVKTKDGVVEITGKHEEKQDEHGFVSRCFTRKYTLPPGVDPTAVTSSLSPDGILTVE 83 (86)
T ss_pred eEEEcCCeEEEEEECCCCCHHHEEEEEECCEEEEEEEECcCcCCCCEEEEEEEEEEECCCCCCHHHcEEEECCCCeEEEE
Confidence 6889999999999999999999999999999999875321 1 13556778999999999998887 7777776
Q ss_pred E
Q 017264 248 L 248 (374)
Q Consensus 248 L 248 (374)
|
T Consensus 84 l 84 (86)
T cd06475 84 A 84 (86)
T ss_pred e
Confidence 5
No 241
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.81 E-value=0.0069 Score=55.46 Aligned_cols=99 Identities=15% Similarity=0.118 Sum_probs=84.6
Q ss_pred HHHHHHHHhccCHHHHHHHHHHHHH----h--CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 017264 6 EKKAKEAFIDDYFELAYDLYSQAIE----I--SPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATA 79 (374)
Q Consensus 6 ~~~g~~~~~~~~y~~Al~~y~~aL~----~--~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~ 79 (374)
...|...++.||-..|-.+|++.-+ + -..+...+.+.+.+|...++|.+|...+.+++..+|.++.+.-++|.|
T Consensus 216 s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALc 295 (366)
T KOG2796|consen 216 SGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALC 295 (366)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHH
Confidence 4578889999999999999984332 2 233456777788888888999999999999999999999999999999
Q ss_pred HHHhcCHHHHHHHHHHHHhcCCCCh
Q 017264 80 CMKLEEYETAKVALEKGASLAPGDS 104 (374)
Q Consensus 80 ~~~lg~~~eA~~~~~~a~~l~p~~~ 104 (374)
+..+|+..+|+..++.+++..|...
T Consensus 296 llYlg~l~DAiK~~e~~~~~~P~~~ 320 (366)
T KOG2796|consen 296 LLYLGKLKDALKQLEAMVQQDPRHY 320 (366)
T ss_pred HHHHHHHHHHHHHHHHHhccCCccc
Confidence 9999999999999999999999754
No 242
>cd06497 ACD_alphaA-crystallin_HspB4 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaA-crystallin (HspB4, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 does not belong to this group. Mutations inHspB4 have been associated with Autosomal Dominant Congenital Cataract (ADCC). The chaperone-like functions of HspB4 are considered important for maintaining lens transparency and preventing cataract.
Probab=96.76 E-value=0.0068 Score=46.38 Aligned_cols=72 Identities=10% Similarity=0.119 Sum_probs=59.3
Q ss_pred cccCCeEEEEEEeCCCCCCceEEEEeeeEEEEEEEcC----CC----CeeeeccccccccccCceEEEE-cCcEEEEEEe
Q 017264 179 YQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVP----GE----EAYHFQPRLFGKIIPAKCRYEV-LSTKVEIRLA 249 (374)
Q Consensus 179 ~Qt~~~V~i~i~~k~~~~~~v~v~~~~~~l~v~~~~~----~~----~~y~~~~~L~~~I~p~~s~~~v-~~~kiei~L~ 249 (374)
+.+++.+.|.+.++|+.++++.|++..+.|.|+.... ++ .+|.-.+.|...|++++.+-.+ ....+.|+|.
T Consensus 6 ~e~~~~~~v~~dlpG~~~edi~V~v~~~~L~I~g~~~~~~~~~~~~~~ef~R~~~LP~~Vd~~~i~A~~~~dGvL~I~~P 85 (86)
T cd06497 6 RSDRDKFTIYLDVKHFSPEDLTVKVLDDYVEIHGKHSERQDDHGYISREFHRRYRLPSNVDQSAITCSLSADGMLTFSGP 85 (86)
T ss_pred EEcCCEEEEEEECCCCCHHHeEEEEECCEEEEEEEEcceeCCCCEEEEEEEEEEECCCCCChHHeEEEeCCCCEEEEEec
Confidence 5688999999999999999999999999999987431 11 1255567899999999999998 5778999887
Q ss_pred e
Q 017264 250 K 250 (374)
Q Consensus 250 K 250 (374)
|
T Consensus 86 K 86 (86)
T cd06497 86 K 86 (86)
T ss_pred C
Confidence 6
No 243
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=96.76 E-value=0.012 Score=55.52 Aligned_cols=63 Identities=17% Similarity=0.325 Sum_probs=59.4
Q ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Q 017264 5 LEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEP 67 (374)
Q Consensus 5 l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p 67 (374)
+.++|-+.+-.|||..||.-+++|+.++|.+..+|++-|.|++.+.++.+|+.+++..++++.
T Consensus 122 Y~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~d~ 184 (390)
T KOG0551|consen 122 YTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKCLLELERFAEAVNWCEEGLQIDD 184 (390)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhH
Confidence 578999999999999999999999999999999999999999999999999999999987764
No 244
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=96.71 E-value=0.01 Score=48.75 Aligned_cols=66 Identities=24% Similarity=0.175 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC
Q 017264 38 LFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGD 103 (374)
Q Consensus 38 ~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~a~~l~p~~ 103 (374)
.+-..|.++...|+++.|++-|.++|.+.|..+.+|.++++++.-.|+.++|+..+.+++++..+.
T Consensus 45 ~LEl~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~ 110 (175)
T KOG4555|consen 45 ELELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ 110 (175)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc
Confidence 344567788889999999999999999999999999999999999999999999999999998654
No 245
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.70 E-value=0.013 Score=49.09 Aligned_cols=61 Identities=21% Similarity=0.191 Sum_probs=52.5
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q 017264 4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIE 64 (374)
Q Consensus 4 ~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~ 64 (374)
.+...+..+...|+++.|+..+.+++..+|.+-.++..+..+|..+|++.+|+..|.++..
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 3456677888999999999999999999999999999999999999999999999987764
No 246
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=96.69 E-value=0.046 Score=47.72 Aligned_cols=117 Identities=18% Similarity=0.116 Sum_probs=92.5
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 017264 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNS--AELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATAC 80 (374)
Q Consensus 3 ~~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~--~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~ 80 (374)
.-+...+++.|..+++..|...++...+.+|.. +.-...+|.+|..+|++.+|...|+.++...|+. .+..+++..+
T Consensus 125 a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg~-~ar~~Y~e~L 203 (251)
T COG4700 125 AMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPGP-QARIYYAEML 203 (251)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCCH-HHHHHHHHHH
Confidence 346789999999999999999999999987753 5666777888999999999999999999998865 5678899999
Q ss_pred HHhcCHHHHHHHHHHHHh----cCCCC-hhHHHHHHHHHHHHHhh
Q 017264 81 MKLEEYETAKVALEKGAS----LAPGD-SRFTNLIKECEERIAEE 120 (374)
Q Consensus 81 ~~lg~~~eA~~~~~~a~~----l~p~~-~~~~~~~~~~~~~l~~~ 120 (374)
..+|+.++|...+..... -.|.- +..+.|+..+..++++.
T Consensus 204 a~qgr~~ea~aq~~~v~d~~~r~~~H~rkh~reW~~~A~~~~~qs 248 (251)
T COG4700 204 AKQGRLREANAQYVAVVDTAKRSRPHYRKHHREWIKTANERLKQS 248 (251)
T ss_pred HHhcchhHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhh
Confidence 999999888876655432 22221 24677777777666653
No 247
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=96.69 E-value=0.0031 Score=38.29 Aligned_cols=31 Identities=26% Similarity=0.339 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCC
Q 017264 72 AYWRKATACMKLEEYETAKVALEKGASLAPG 102 (374)
Q Consensus 72 a~~~lg~~~~~lg~~~eA~~~~~~a~~l~p~ 102 (374)
++|++|.+++.+|++++|+..|++++...|+
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 4566666666666666666666666665554
No 248
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=96.68 E-value=0.002 Score=58.00 Aligned_cols=76 Identities=16% Similarity=0.293 Sum_probs=66.8
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Q 017264 41 DRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEER 116 (374)
Q Consensus 41 ~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~a~~l~p~~~~~~~~~~~~~~~ 116 (374)
.-|.+++.-++|..|+..|.+||.++|..+..|-+++.||+++.+++.....+.++++++|+.......++.+...
T Consensus 15 E~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~ 90 (284)
T KOG4642|consen 15 EQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQ 90 (284)
T ss_pred hccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHh
Confidence 3466777778999999999999999999999999999999999999999999999999999887766666665544
No 249
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.65 E-value=0.0083 Score=62.27 Aligned_cols=115 Identities=22% Similarity=0.353 Sum_probs=99.5
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHc--cCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 017264 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNS----AELFADRAQASIKL--QNFTEAVADANRAIELEPSMSKAYWRK 76 (374)
Q Consensus 3 ~~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~----~~~~~~ra~~~~~l--~~~~~Al~~~~~al~l~p~~~~a~~~l 76 (374)
..+...|+.+|+.++|..|.-.|..++.+-|.+ ...+.+++.||..+ ++|..++..+..|+...|.+..+++.+
T Consensus 54 ~~~~~E~n~~~~K~d~~~~~~~~~~~~~llp~~~~~~a~~~~~~~s~~m~~~l~~~~~~~~E~~la~~~~p~i~~~Ll~r 133 (748)
T KOG4151|consen 54 LELKEEGNKLFQKRDYEGAMFRYDCAIKLLPKDHHVVATLRSNQASCYMQLGLGEYPKAIPECELALESQPRISKALLKR 133 (748)
T ss_pred HHHHhhhhHHhhhhhhhccchhhhhhheeccccchhhhhHHHHHHHHHhhcCccchhhhcCchhhhhhccchHHHHHhhh
Confidence 456789999999999999999999999987733 56777788888765 799999999999999999999999999
Q ss_pred HHHHHHhcCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Q 017264 77 ATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERI 117 (374)
Q Consensus 77 g~~~~~lg~~~eA~~~~~~a~~l~p~~~~~~~~~~~~~~~l 117 (374)
+.+|..+++++-|+..+.-.....|.+..+.....+++..+
T Consensus 134 ~~~y~al~k~d~a~rdl~i~~~~~p~~~~~~eif~elk~ll 174 (748)
T KOG4151|consen 134 ARKYEALNKLDLAVRDLRIVEKMDPSNVSASEIFEELKGLL 174 (748)
T ss_pred hhHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHH
Confidence 99999999999999998888889999977666556666555
No 250
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=96.64 E-value=0.0065 Score=56.72 Aligned_cols=74 Identities=22% Similarity=0.262 Sum_probs=58.5
Q ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 017264 5 LEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKAT 78 (374)
Q Consensus 5 l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~ 78 (374)
..+.|....+.|+.+.|..+|..||.+.|.++.++..+|.....-++.-+|-++|-+|+.+.|.+.+++.+++.
T Consensus 119 Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~R 192 (472)
T KOG3824|consen 119 ALKAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRAR 192 (472)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhc
Confidence 34566677788888888888888888888888888888888777778888888888888888888887776654
No 251
>cd06526 metazoan_ACD Alpha-crystallin domain (ACD) of metazoan alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=96.64 E-value=0.0078 Score=45.65 Aligned_cols=68 Identities=19% Similarity=0.194 Sum_probs=57.1
Q ss_pred CeEEEEEEeCCCCCCceEEEEeeeEEEEEEEcCCC--------CeeeeccccccccccCceEEEEcC-cEEEEEEee
Q 017264 183 EEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPGE--------EAYHFQPRLFGKIIPAKCRYEVLS-TKVEIRLAK 250 (374)
Q Consensus 183 ~~V~i~i~~k~~~~~~v~v~~~~~~l~v~~~~~~~--------~~y~~~~~L~~~I~p~~s~~~v~~-~kiei~L~K 250 (374)
+.+.|.+.++|+.++++.|.+..+.|.|+...... ..|.-.+.|...|+++..+.++.. ..+.|++.|
T Consensus 7 ~~~~v~~dlpG~~~edI~v~v~~~~L~I~g~~~~~~~~~~~~~~~f~r~~~LP~~vd~~~i~A~~~~~GvL~I~~Pk 83 (83)
T cd06526 7 EKFQVTLDVKGFKPEELKVKVSDNKLVVEGKHEEREDEHGYVSREFTRRYQLPEGVDPDSVTSSLSSDGVLTIEAPK 83 (83)
T ss_pred eeEEEEEECCCCCHHHcEEEEECCEEEEEEEEeeeccCCCEEEEEEEEEEECCCCCChHHeEEEeCCCcEEEEEecC
Confidence 58899999999999999999999999998753221 246677899999999999999988 788888865
No 252
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=96.61 E-value=0.0064 Score=57.97 Aligned_cols=96 Identities=17% Similarity=0.142 Sum_probs=81.5
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC---------
Q 017264 4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNS------AELFADRAQASIKLQNFTEAVADANRAIELEPS--------- 68 (374)
Q Consensus 4 ~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~------~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~--------- 68 (374)
.+...|+++.-.+.|+.+++.|..|++...++ ..++..+|..|-+++++++|+-+..+|+.+-..
T Consensus 124 ~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~k 203 (518)
T KOG1941|consen 124 VSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLK 203 (518)
T ss_pred hhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHH
Confidence 34567899999999999999999999984443 357888999999999999999999999987532
Q ss_pred -CHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Q 017264 69 -MSKAYWRKATACMKLEEYETAKVALEKGASL 99 (374)
Q Consensus 69 -~~~a~~~lg~~~~~lg~~~eA~~~~~~a~~l 99 (374)
..-++|+++++|..+|+..+|.++++.+.++
T Consensus 204 yr~~~lyhmaValR~~G~LgdA~e~C~Ea~kl 235 (518)
T KOG1941|consen 204 YRAMSLYHMAVALRLLGRLGDAMECCEEAMKL 235 (518)
T ss_pred HHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 2346788999999999999999999998765
No 253
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=96.60 E-value=0.042 Score=53.01 Aligned_cols=110 Identities=13% Similarity=0.099 Sum_probs=87.9
Q ss_pred HHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcC
Q 017264 6 EKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEE 85 (374)
Q Consensus 6 ~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~lg~ 85 (374)
...+..+...|++++|.+...++|+..-+. . ++.+.- ..+.+++..=+..+++.+...|+++..++.+|..|+..+.
T Consensus 267 ~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~-~-L~~~~~-~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~ 343 (400)
T COG3071 267 VAYAERLIRLGDHDEAQEIIEDALKRQWDP-R-LCRLIP-RLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKL 343 (400)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHhccCh-h-HHHHHh-hcCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhH
Confidence 345677889999999999999999985543 2 222222 2356888999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHh
Q 017264 86 YETAKVALEKGASLAPGDSRFTNLIKECEERIAE 119 (374)
Q Consensus 86 ~~eA~~~~~~a~~l~p~~~~~~~~~~~~~~~l~~ 119 (374)
|.+|..+|+.++.+.|+.. -..+++.+..+++.
T Consensus 344 w~kA~~~leaAl~~~~s~~-~~~~la~~~~~~g~ 376 (400)
T COG3071 344 WGKASEALEAALKLRPSAS-DYAELADALDQLGE 376 (400)
T ss_pred HHHHHHHHHHHHhcCCChh-hHHHHHHHHHHcCC
Confidence 9999999999999998754 45566666655544
No 254
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=96.59 E-value=0.011 Score=40.85 Aligned_cols=42 Identities=21% Similarity=0.195 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 017264 37 ELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKAT 78 (374)
Q Consensus 37 ~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~ 78 (374)
+.++.+|.+++++|+|.+|+.+++.+|+++|++..+.-....
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~ 43 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKEL 43 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHH
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHH
Confidence 456788889999999999999999999999988776554433
No 255
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.58 E-value=0.014 Score=59.09 Aligned_cols=93 Identities=14% Similarity=0.068 Sum_probs=45.7
Q ss_pred HHHHHHHHhccCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH
Q 017264 6 EKKAKEAFIDDYFELAYDLYSQAIEISPN----SAELFADRAQASIKLQNFTEAVADANRAIELEPS-MSKAYWRKATAC 80 (374)
Q Consensus 6 ~~~g~~~~~~~~y~~Al~~y~~aL~~~p~----~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~-~~~a~~~lg~~~ 80 (374)
+..|..+...|+.++|++.|++++..... ....++.+|.||.-+++|++|..++.+.++.+.= .+-..|..|.|+
T Consensus 271 ~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~c~ 350 (468)
T PF10300_consen 271 FFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAAACL 350 (468)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 44555555555566666655555532111 1234455555555555566665555555554321 122233345555
Q ss_pred HHhcCH-------HHHHHHHHHHHh
Q 017264 81 MKLEEY-------ETAKVALEKGAS 98 (374)
Q Consensus 81 ~~lg~~-------~eA~~~~~~a~~ 98 (374)
..+++. ++|...|.++..
T Consensus 351 ~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 351 LMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HhhccchhhhhhHHHHHHHHHHHHH
Confidence 555555 555555554433
No 256
>cd06498 ACD_alphaB-crystallin_HspB5 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaB-crystallin (HspB5, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. HspB4 does not belong to this group. HspB5 shows increased synthesis in response to stress. HspB5 is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. Its functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its oligomerization and anti-apoptotic activ
Probab=96.58 E-value=0.011 Score=44.93 Aligned_cols=72 Identities=8% Similarity=0.101 Sum_probs=58.9
Q ss_pred ccCCeEEEEEEeCCCCCCceEEEEeeeEEEEEEEcCC---CC-----eeeeccccccccccCceEEEEc-CcEEEEEEee
Q 017264 180 QKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPG---EE-----AYHFQPRLFGKIIPAKCRYEVL-STKVEIRLAK 250 (374)
Q Consensus 180 Qt~~~V~i~i~~k~~~~~~v~v~~~~~~l~v~~~~~~---~~-----~y~~~~~L~~~I~p~~s~~~v~-~~kiei~L~K 250 (374)
-+++.+.|.+.++|+.++++.|++..+.|+|+..... +. .|.=.+.|...|+++..+-+.. ...+.|+|-|
T Consensus 4 ~~~~~~~v~~dlpG~~~edi~V~v~~~~L~I~g~~~~~~~~~~~~~~eF~R~~~LP~~vd~~~i~A~~~~dGvL~I~lPk 83 (84)
T cd06498 4 LEKDKFSVNLDVKHFSPEELKVKVLGDFIEIHGKHEERQDEHGFISREFQRKYRIPADVDPLTITSSLSPDGVLTVCGPR 83 (84)
T ss_pred eCCceEEEEEECCCCCHHHeEEEEECCEEEEEEEEcceeCCCCEEEEEEEEEEECCCCCChHHcEEEeCCCCEEEEEEeC
Confidence 4678899999999999999999999999999874321 11 2555678999999999999996 8899999877
Q ss_pred c
Q 017264 251 A 251 (374)
Q Consensus 251 ~ 251 (374)
+
T Consensus 84 ~ 84 (84)
T cd06498 84 K 84 (84)
T ss_pred C
Confidence 4
No 257
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=96.58 E-value=0.12 Score=47.36 Aligned_cols=111 Identities=15% Similarity=0.099 Sum_probs=85.2
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHc--------cCHHHHHHHHHHHHHhCCCC--
Q 017264 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSA---ELFADRAQASIKL--------QNFTEAVADANRAIELEPSM-- 69 (374)
Q Consensus 3 ~~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~---~~~~~ra~~~~~l--------~~~~~Al~~~~~al~l~p~~-- 69 (374)
+.+...+.++++.++|+.|+...++.+++.|.++ .+++-+|.+++.. .-..+|+..|...+..-|+.
T Consensus 72 qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Y 151 (254)
T COG4105 72 QAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRY 151 (254)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcc
Confidence 4578899999999999999999999999988774 5677778887664 33457888999999999863
Q ss_pred ---HH----------HH--HHHHHHHHHhcCHHHHHHHHHHHHhcCCCChhHHHHHHHH
Q 017264 70 ---SK----------AY--WRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKEC 113 (374)
Q Consensus 70 ---~~----------a~--~~lg~~~~~lg~~~eA~~~~~~a~~l~p~~~~~~~~~~~~ 113 (374)
+. +. +..|..|...|.|-.|+.-++..++..|+.......+..+
T Consensus 152 a~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l 210 (254)
T COG4105 152 APDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARL 210 (254)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHH
Confidence 11 11 2347778889999999999999999887766544444333
No 258
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.54 E-value=0.05 Score=50.01 Aligned_cols=78 Identities=21% Similarity=0.167 Sum_probs=50.2
Q ss_pred HHHHHHHHHHc----cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChhHHHHHHHHH
Q 017264 39 FADRAQASIKL----QNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECE 114 (374)
Q Consensus 39 ~~~ra~~~~~l----~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~a~~l~p~~~~~~~~~~~~~ 114 (374)
+..+|.++.++ +++.+|.-.|+...+.-+-.+..+...+.|+..+|+|++|...++.++.-++.+++...++--|-
T Consensus 172 LtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a 251 (299)
T KOG3081|consen 172 LTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLA 251 (299)
T ss_pred HHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHH
Confidence 34444444443 34555555555555434444556666788888888888888888888888888887766665554
Q ss_pred HH
Q 017264 115 ER 116 (374)
Q Consensus 115 ~~ 116 (374)
..
T Consensus 252 ~~ 253 (299)
T KOG3081|consen 252 LH 253 (299)
T ss_pred HH
Confidence 33
No 259
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=96.49 E-value=0.0051 Score=35.91 Aligned_cols=32 Identities=31% Similarity=0.473 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCC
Q 017264 71 KAYWRKATACMKLEEYETAKVALEKGASLAPG 102 (374)
Q Consensus 71 ~a~~~lg~~~~~lg~~~eA~~~~~~a~~l~p~ 102 (374)
.+++++|.++..+++++.|..+|++++.++|.
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 35666777777777777777777776666554
No 260
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.48 E-value=0.042 Score=50.48 Aligned_cols=116 Identities=12% Similarity=0.105 Sum_probs=94.2
Q ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHH----hCC--CCHHHHHHHH
Q 017264 5 LEKKAKEAFIDDYFELAYDLYSQAIEIS-PNSAELFADRAQASIKLQNFTEAVADANRAIE----LEP--SMSKAYWRKA 77 (374)
Q Consensus 5 l~~~g~~~~~~~~y~~Al~~y~~aL~~~-p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~----l~p--~~~~a~~~lg 77 (374)
+...++.+.-.|.|.-.+.+|.+.++.+ |..+.+...++..-++.|+...|..+|++.-. ++. ...-++.+.+
T Consensus 180 my~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a 259 (366)
T KOG2796|consen 180 MYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSA 259 (366)
T ss_pred HHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhh
Confidence 4566788889999999999999999998 66788889999999999999999999985443 332 3445778889
Q ss_pred HHHHHhcCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhh
Q 017264 78 TACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE 120 (374)
Q Consensus 78 ~~~~~lg~~~eA~~~~~~a~~l~p~~~~~~~~~~~~~~~l~~~ 120 (374)
.+|...++|..|...|.+++..++.++......+-|..-++..
T Consensus 260 ~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l 302 (366)
T KOG2796|consen 260 FLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKL 302 (366)
T ss_pred hheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHH
Confidence 9999999999999999999999999887655555555444433
No 261
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=96.46 E-value=0.0075 Score=60.65 Aligned_cols=106 Identities=14% Similarity=0.072 Sum_probs=93.1
Q ss_pred HHHHHHhccCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCH
Q 017264 8 KAKEAFIDDYFELAYDLYSQAIEISPNSA-ELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEY 86 (374)
Q Consensus 8 ~g~~~~~~~~y~~Al~~y~~aL~~~p~~~-~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~lg~~ 86 (374)
.|...-..|+--.|+..+..|+...|... ..+.++|+++++-+..-+|-..+.+++.+.-.-+-.+|.+|.++..+.+.
T Consensus 613 aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i 692 (886)
T KOG4507|consen 613 AGLYWRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNI 692 (886)
T ss_pred ccceeeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhh
Confidence 34445567899999999999999988653 46789999999999999999999999999988888999999999999999
Q ss_pred HHHHHHHHHHHhcCCCChhHHHHHHHH
Q 017264 87 ETAKVALEKGASLAPGDSRFTNLIKEC 113 (374)
Q Consensus 87 ~eA~~~~~~a~~l~p~~~~~~~~~~~~ 113 (374)
+.|++.|..++.++|.+..+..-+.++
T Consensus 693 ~~a~~~~~~a~~~~~~~~~~~~~l~~i 719 (886)
T KOG4507|consen 693 SGALEAFRQALKLTTKCPECENSLKLI 719 (886)
T ss_pred HHHHHHHHHHHhcCCCChhhHHHHHHH
Confidence 999999999999999999887776554
No 262
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=96.40 E-value=0.0066 Score=36.77 Aligned_cols=31 Identities=26% Similarity=0.303 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Q 017264 38 LFADRAQASIKLQNFTEAVADANRAIELEPS 68 (374)
Q Consensus 38 ~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~ 68 (374)
+++.+|.||.++|++++|+..|++++...|+
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 4556666666666666666666666666554
No 263
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=96.40 E-value=0.013 Score=54.76 Aligned_cols=72 Identities=18% Similarity=0.118 Sum_probs=63.1
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChhHHHHHHH
Q 017264 41 DRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKE 112 (374)
Q Consensus 41 ~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~a~~l~p~~~~~~~~~~~ 112 (374)
+.|.-..+.|+.++|...|+.|+.++|++++++..+|+.....++.-+|-.||-+++.+.|.|.++....++
T Consensus 121 ~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~R 192 (472)
T KOG3824|consen 121 KAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRAR 192 (472)
T ss_pred HHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhc
Confidence 344445677999999999999999999999999999999999999999999999999999999876555443
No 264
>cd06478 ACD_HspB4-5-6 Alpha-crystallin domain found in alphaA-crystallin (HspB4), alphaB-crystallin (HspB5), and the small heat shock protein (sHsp) HspB6, also known as Hsp20. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 on the other hand is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. HspB5's functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its ol
Probab=96.31 E-value=0.019 Score=43.54 Aligned_cols=71 Identities=14% Similarity=0.142 Sum_probs=57.2
Q ss_pred ccCCeEEEEEEeCCCCCCceEEEEeeeEEEEEEEcC---CC-----CeeeeccccccccccCceEEEEc-CcEEEEEEee
Q 017264 180 QKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVP---GE-----EAYHFQPRLFGKIIPAKCRYEVL-STKVEIRLAK 250 (374)
Q Consensus 180 Qt~~~V~i~i~~k~~~~~~v~v~~~~~~l~v~~~~~---~~-----~~y~~~~~L~~~I~p~~s~~~v~-~~kiei~L~K 250 (374)
.+++.+.|.+-++|+.++++.|++..+.|.|+.... .+ ..|.-.+.|...|+++..+-.+. ...+.|+|-|
T Consensus 4 ~~~~~~~v~~dlpG~~~edI~V~v~~~~L~I~g~~~~~~~~~~~~~~ef~R~~~LP~~vd~~~i~A~~~~dGvL~I~~PK 83 (83)
T cd06478 4 LDKDRFSVNLDVKHFSPEELSVKVLGDFVEIHGKHEERQDEHGFISREFHRRYRLPPGVDPAAITSSLSADGVLTISGPR 83 (83)
T ss_pred ecCceEEEEEECCCCCHHHeEEEEECCEEEEEEEEceEcCCCCEEEEEEEEEEECCCCcChHHeEEEECCCCEEEEEecC
Confidence 467899999999999999999999999999987432 11 12555678999999999888884 7788888865
No 265
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=96.29 E-value=0.061 Score=53.43 Aligned_cols=91 Identities=13% Similarity=0.137 Sum_probs=78.7
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcC-HHHHHHHHHHHH
Q 017264 19 ELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEE-YETAKVALEKGA 97 (374)
Q Consensus 19 ~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~lg~-~~eA~~~~~~a~ 97 (374)
..-+.+|..|+..-+.+..++......-.+.+.+.+-...|.+++..+|++++.|...|.-.|..+. .+.|.+.|.+++
T Consensus 88 ~rIv~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgL 167 (568)
T KOG2396|consen 88 NRIVFLYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGL 167 (568)
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHh
Confidence 4456789999999998999888876555566669999999999999999999999999999988877 899999999999
Q ss_pred hcCCCChhHHHH
Q 017264 98 SLAPGDSRFTNL 109 (374)
Q Consensus 98 ~l~p~~~~~~~~ 109 (374)
+++|+.+.+...
T Consensus 168 R~npdsp~Lw~e 179 (568)
T KOG2396|consen 168 RFNPDSPKLWKE 179 (568)
T ss_pred hcCCCChHHHHH
Confidence 999999875443
No 266
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.27 E-value=0.041 Score=55.68 Aligned_cols=97 Identities=22% Similarity=0.172 Sum_probs=81.2
Q ss_pred hccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHhcCHHHH
Q 017264 14 IDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPS----MSKAYWRKATACMKLEEYETA 89 (374)
Q Consensus 14 ~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~----~~~a~~~lg~~~~~lg~~~eA 89 (374)
...+...|.+++...+...|+....++..|..+...|+.++|++.+++++..... ..-+++.+|.++..+.+|++|
T Consensus 245 ~~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A 324 (468)
T PF10300_consen 245 EDVPLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEA 324 (468)
T ss_pred cCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHH
Confidence 3567788999999999999999999999999999999999999999999854433 234678899999999999999
Q ss_pred HHHHHHHHhcCCCChhHHHHH
Q 017264 90 KVALEKGASLAPGDSRFTNLI 110 (374)
Q Consensus 90 ~~~~~~a~~l~p~~~~~~~~~ 110 (374)
..+|.+..+.+.-.+.+...+
T Consensus 325 ~~~f~~L~~~s~WSka~Y~Y~ 345 (468)
T PF10300_consen 325 AEYFLRLLKESKWSKAFYAYL 345 (468)
T ss_pred HHHHHHHHhccccHHHHHHHH
Confidence 999999988765544443333
No 267
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=96.25 E-value=0.006 Score=60.12 Aligned_cols=77 Identities=21% Similarity=0.249 Sum_probs=70.2
Q ss_pred HHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 017264 6 EKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK 82 (374)
Q Consensus 6 ~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~ 82 (374)
-+++.++++.++|..|+.-+.+||+.+|....+|+.+|.+...++.+.+|+.+|+....+.|+.+.+...+..|-+.
T Consensus 42 anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~~ 118 (476)
T KOG0376|consen 42 ANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFKKALLDLEKVKKLAPNDPDATRKIDECNKI 118 (476)
T ss_pred chhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHHHHHHHHHHhhhcCcCcHHHHHHHHHHHHH
Confidence 35778999999999999999999999999999999999999999999999999999999999999877766666544
No 268
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=96.25 E-value=0.065 Score=48.36 Aligned_cols=92 Identities=18% Similarity=0.072 Sum_probs=67.8
Q ss_pred HhccCHHHHHHHHHHHHHh----C-CCC--HHHHHHHHHHHHHccCHH-------HHHHHHHHHHHhCC------CCHHH
Q 017264 13 FIDDYFELAYDLYSQAIEI----S-PNS--AELFADRAQASIKLQNFT-------EAVADANRAIELEP------SMSKA 72 (374)
Q Consensus 13 ~~~~~y~~Al~~y~~aL~~----~-p~~--~~~~~~ra~~~~~l~~~~-------~Al~~~~~al~l~p------~~~~a 72 (374)
-....+++|++.|.-||-. . +.. +.++..+|.+|..+++.+ .|+..|.+|+.... +....
T Consensus 88 ~~~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l 167 (214)
T PF09986_consen 88 SGERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATL 167 (214)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHH
Confidence 3456788999988877765 2 222 567788899998888854 45556666665442 23568
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCh
Q 017264 73 YWRKATACMKLEEYETAKVALEKGASLAPGDS 104 (374)
Q Consensus 73 ~~~lg~~~~~lg~~~eA~~~~~~a~~l~p~~~ 104 (374)
.|.+|.+++++|++++|+.+|.+++.......
T Consensus 168 ~YLigeL~rrlg~~~eA~~~fs~vi~~~~~s~ 199 (214)
T PF09986_consen 168 LYLIGELNRRLGNYDEAKRWFSRVIGSKKASK 199 (214)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHcCCCCCC
Confidence 88999999999999999999999987655444
No 269
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=96.16 E-value=0.091 Score=49.43 Aligned_cols=107 Identities=17% Similarity=0.201 Sum_probs=84.4
Q ss_pred HHHHHHHHHh-ccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHH
Q 017264 5 LEKKAKEAFI-DDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMS---KAYWRKATAC 80 (374)
Q Consensus 5 l~~~g~~~~~-~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~---~a~~~lg~~~ 80 (374)
+...|..-+. .++...|...|+.+|+..|.+..++......+..+++...|...|++++..-+... ..|-++...-
T Consensus 38 y~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE 117 (280)
T PF05843_consen 38 YVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFE 117 (280)
T ss_dssp HHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHH
Confidence 4455665455 78888899999999999999999999999999999999999999999998766443 5677777777
Q ss_pred HHhcCHHHHHHHHHHHHhcCCCChhHHHHHH
Q 017264 81 MKLEEYETAKVALEKGASLAPGDSRFTNLIK 111 (374)
Q Consensus 81 ~~lg~~~eA~~~~~~a~~l~p~~~~~~~~~~ 111 (374)
...|+.+......+++.++.|++..+.....
T Consensus 118 ~~~Gdl~~v~~v~~R~~~~~~~~~~~~~f~~ 148 (280)
T PF05843_consen 118 SKYGDLESVRKVEKRAEELFPEDNSLELFSD 148 (280)
T ss_dssp HHHS-HHHHHHHHHHHHHHTTTS-HHHHHHC
T ss_pred HHcCCHHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 8899999999999999999998665544443
No 270
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.15 E-value=0.084 Score=48.54 Aligned_cols=91 Identities=13% Similarity=0.172 Sum_probs=79.8
Q ss_pred ccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHH-HH
Q 017264 15 DDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKV-AL 93 (374)
Q Consensus 15 ~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~-~~ 93 (374)
.+.+..|.-.|.+.-...+..+..+...|.|++.+++|++|...++.|+..++++++.+.++-++-..+|.-.++.. .+
T Consensus 186 gek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l 265 (299)
T KOG3081|consen 186 GEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNL 265 (299)
T ss_pred chhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHH
Confidence 34588899999998887888899999999999999999999999999999999999999999999999999877775 55
Q ss_pred HHHHhcCCCChh
Q 017264 94 EKGASLAPGDSR 105 (374)
Q Consensus 94 ~~a~~l~p~~~~ 105 (374)
.+.....|.++-
T Consensus 266 ~QLk~~~p~h~~ 277 (299)
T KOG3081|consen 266 SQLKLSHPEHPF 277 (299)
T ss_pred HHHHhcCCcchH
Confidence 666677777663
No 271
>PRK04841 transcriptional regulator MalT; Provisional
Probab=96.15 E-value=0.059 Score=58.88 Aligned_cols=94 Identities=15% Similarity=0.012 Sum_probs=77.5
Q ss_pred HHHHHHHHhccCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC------CHHHHH
Q 017264 6 EKKAKEAFIDDYFELAYDLYSQAIEISPNS-----AELFADRAQASIKLQNFTEAVADANRAIELEPS------MSKAYW 74 (374)
Q Consensus 6 ~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~-----~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~------~~~a~~ 74 (374)
...|..++..|+|+.|..++.+++...+.. ..++..+|.++...|++++|+..+.+++.+... ...++.
T Consensus 456 ~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~ 535 (903)
T PRK04841 456 ALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLL 535 (903)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHH
Confidence 346778889999999999999999864432 245677889999999999999999999976442 134667
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHhc
Q 017264 75 RKATACMKLEEYETAKVALEKGASL 99 (374)
Q Consensus 75 ~lg~~~~~lg~~~eA~~~~~~a~~l 99 (374)
.+|.+++..|++++|...+++++.+
T Consensus 536 ~la~~~~~~G~~~~A~~~~~~al~~ 560 (903)
T PRK04841 536 QQSEILFAQGFLQAAYETQEKAFQL 560 (903)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 8899999999999999999998876
No 272
>cd06470 ACD_IbpA-B_like Alpha-crystallin domain (ACD) found in Escherichia coli inclusion body-associated proteins IbpA and IbpB, and similar proteins. IbpA and IbpB are 16 kDa small heat shock proteins (sHsps). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. IbpA and IbpB are produced during high-level production of various heterologous proteins, specifically human prorenin, renin and bovine insulin-like growth factor 2 (bIGF-2), and are strongly associated with inclusion bodies containing these heterologous proteins. IbpA and IbpB work as an integrated system to stabilize thermally aggregated proteins in a disaggregation competent state. The chaperone activity of IbpB is also significantly elevated as the temperature increases from normal to heat shock. The high temperature results in the disassociation of 2-3-MDa IbpB oligomers into smaller approximately 6
Probab=96.13 E-value=0.036 Score=42.68 Aligned_cols=73 Identities=12% Similarity=0.167 Sum_probs=56.4
Q ss_pred ccccccC-CeEEEEEEeCCCCCCceEEEEeeeEEEEEEEcCC--------------CCeeeeccccccccccCceEEEEc
Q 017264 176 HEFYQKP-EEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPG--------------EEAYHFQPRLFGKIIPAKCRYEVL 240 (374)
Q Consensus 176 ~~W~Qt~-~~V~i~i~~k~~~~~~v~v~~~~~~l~v~~~~~~--------------~~~y~~~~~L~~~I~p~~s~~~v~ 240 (374)
++=++++ +.+.|.+.++|+.++++.|.+..+.|.|+..... -..|.-.+.|...|+.+ +....
T Consensus 3 ~di~e~~~~~~~v~~~lPG~~kedi~v~~~~~~L~I~g~~~~~~~~~~~~~~~e~~~g~f~R~~~LP~~vd~~--~A~~~ 80 (90)
T cd06470 3 YNIEKTGENNYRITLAVAGFSEDDLEIEVENNQLTVTGKKADEENEEREYLHRGIAKRAFERSFNLADHVKVK--GAELE 80 (90)
T ss_pred eeeEEcCCCeEEEEEECCCCCHHHeEEEEECCEEEEEEEEcccccCCCcEEEEEEeceEEEEEEECCCCceEC--eeEEe
Confidence 3445664 8999999999999999999999999999863211 12466677888888876 57778
Q ss_pred CcEEEEEEee
Q 017264 241 STKVEIRLAK 250 (374)
Q Consensus 241 ~~kiei~L~K 250 (374)
...+.|+|.+
T Consensus 81 ~GvL~I~l~~ 90 (90)
T cd06470 81 NGLLTIDLER 90 (90)
T ss_pred CCEEEEEEEC
Confidence 8888888853
No 273
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=96.12 E-value=0.088 Score=52.08 Aligned_cols=101 Identities=15% Similarity=0.184 Sum_probs=90.3
Q ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc
Q 017264 5 LEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLE 84 (374)
Q Consensus 5 l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~lg 84 (374)
++.-|.--..+++++.|...|.+||..+..+..+++..+.+-++.++.-.|...+++|+.+-|.--..||.+-.+--.+|
T Consensus 76 WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~Lg 155 (677)
T KOG1915|consen 76 WIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLG 155 (677)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhc
Confidence 44556666778999999999999999999999999999999999999999999999999999998899999999999999
Q ss_pred CHHHHHHHHHHHHhcCCCChh
Q 017264 85 EYETAKVALEKGASLAPGDSR 105 (374)
Q Consensus 85 ~~~eA~~~~~~a~~l~p~~~~ 105 (374)
+..-|.+.|++=+...|+...
T Consensus 156 Ni~gaRqiferW~~w~P~eqa 176 (677)
T KOG1915|consen 156 NIAGARQIFERWMEWEPDEQA 176 (677)
T ss_pred ccHHHHHHHHHHHcCCCcHHH
Confidence 999999999998888887543
No 274
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=96.03 E-value=0.069 Score=53.16 Aligned_cols=56 Identities=20% Similarity=0.141 Sum_probs=30.1
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 017264 41 DRAQASIKLQNFTEAVADANRAIELEPS--MSKAYWRKATACMKLEEYETAKVALEKG 96 (374)
Q Consensus 41 ~ra~~~~~l~~~~~Al~~~~~al~l~p~--~~~a~~~lg~~~~~lg~~~eA~~~~~~a 96 (374)
.+|+|..++|+..+|+..+...++..|. +..+++++-.+|..+++|.++...+.+.
T Consensus 264 RLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kY 321 (539)
T PF04184_consen 264 RLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKY 321 (539)
T ss_pred HHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 3455555555555555555555555442 3345555555555555555555555543
No 275
>PRK04841 transcriptional regulator MalT; Provisional
Probab=96.01 E-value=0.057 Score=58.98 Aligned_cols=96 Identities=9% Similarity=0.040 Sum_probs=77.4
Q ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC--------CH
Q 017264 5 LEKKAKEAFIDDYFELAYDLYSQAIEISPNS------AELFADRAQASIKLQNFTEAVADANRAIELEPS--------MS 70 (374)
Q Consensus 5 l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~------~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~--------~~ 70 (374)
+...|..+...|++++|+..|.+++...... ...+..+|.+++..|++.+|...+.+++.+... ..
T Consensus 494 ~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~ 573 (903)
T PRK04841 494 TSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHE 573 (903)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHH
Confidence 4567888899999999999999999763321 346677899999999999999999999986321 12
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Q 017264 71 KAYWRKATACMKLEEYETAKVALEKGASLA 100 (374)
Q Consensus 71 ~a~~~lg~~~~~lg~~~eA~~~~~~a~~l~ 100 (374)
..+..+|.+++..|++++|...+.+++.+.
T Consensus 574 ~~~~~la~~~~~~G~~~~A~~~~~~al~~~ 603 (903)
T PRK04841 574 FLLRIRAQLLWEWARLDEAEQCARKGLEVL 603 (903)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhHHhh
Confidence 345678999999999999999999988764
No 276
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=96.00 E-value=0.01 Score=53.23 Aligned_cols=59 Identities=25% Similarity=0.321 Sum_probs=43.0
Q ss_pred HHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCh
Q 017264 46 SIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDS 104 (374)
Q Consensus 46 ~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~a~~l~p~~~ 104 (374)
..+.++.+.|.+.|.+|+.+.|.+...|||+|......|+++.|...|++.++++|.+-
T Consensus 5 ~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~ 63 (287)
T COG4976 5 LAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDH 63 (287)
T ss_pred hcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccc
Confidence 34556777777777777777777777777777777777777777777777777777664
No 277
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=95.99 E-value=0.015 Score=36.55 Aligned_cols=23 Identities=17% Similarity=0.096 Sum_probs=10.8
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHH
Q 017264 73 YWRKATACMKLEEYETAKVALEK 95 (374)
Q Consensus 73 ~~~lg~~~~~lg~~~eA~~~~~~ 95 (374)
|.++|.+|..+|+|++|+.+|++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~ 24 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQ 24 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Confidence 34444555555555555555554
No 278
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=95.99 E-value=0.09 Score=55.94 Aligned_cols=91 Identities=13% Similarity=0.070 Sum_probs=67.3
Q ss_pred HHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCH
Q 017264 7 KKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEY 86 (374)
Q Consensus 7 ~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~lg~~ 86 (374)
.....+.+.|++++|++++.+. ...|+ ...|..+..++...|+++.|...+++++.+.|.+...|..+..+|...|++
T Consensus 467 ~li~~l~r~G~~~eA~~~~~~~-~~~p~-~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~ 544 (697)
T PLN03081 467 CMIELLGREGLLDEAYAMIRRA-PFKPT-VNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQ 544 (697)
T ss_pred hHHHHHHhcCCHHHHHHHHHHC-CCCCC-HHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCH
Confidence 3455667777777777777653 22333 455777777777888888888888888888888777888888888888888
Q ss_pred HHHHHHHHHHHhc
Q 017264 87 ETAKVALEKGASL 99 (374)
Q Consensus 87 ~eA~~~~~~a~~l 99 (374)
++|...++...+.
T Consensus 545 ~~A~~v~~~m~~~ 557 (697)
T PLN03081 545 AEAAKVVETLKRK 557 (697)
T ss_pred HHHHHHHHHHHHc
Confidence 8888888876543
No 279
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.96 E-value=0.11 Score=46.84 Aligned_cols=100 Identities=20% Similarity=0.156 Sum_probs=74.7
Q ss_pred HHHHHHHHhc-cCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC-------HH
Q 017264 6 EKKAKEAFID-DYFELAYDLYSQAIEISPNS------AELFADRAQASIKLQNFTEAVADANRAIELEPSM-------SK 71 (374)
Q Consensus 6 ~~~g~~~~~~-~~y~~Al~~y~~aL~~~p~~------~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~-------~~ 71 (374)
+..|..|-.. .+++.||.+|.+|-+..... ...++..|..-..+++|.+|+..|++.....-++ -.
T Consensus 117 ~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~Kd 196 (288)
T KOG1586|consen 117 IEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKD 196 (288)
T ss_pred hhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHH
Confidence 4566666655 78999999999988763322 2345555655667899999999999888654433 23
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChh
Q 017264 72 AYWRKATACMKLEEYETAKVALEKGASLAPGDSR 105 (374)
Q Consensus 72 a~~~lg~~~~~lg~~~eA~~~~~~a~~l~p~~~~ 105 (374)
.++..|.|++...+.-.+...+++..+++|.-..
T Consensus 197 yflkAgLChl~~~D~v~a~~ALeky~~~dP~F~d 230 (288)
T KOG1586|consen 197 YFLKAGLCHLCKADEVNAQRALEKYQELDPAFTD 230 (288)
T ss_pred HHHHHHHHhHhcccHHHHHHHHHHHHhcCCcccc
Confidence 5667788889989999999999999999997553
No 280
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=95.96 E-value=0.07 Score=39.75 Aligned_cols=64 Identities=17% Similarity=0.226 Sum_probs=52.9
Q ss_pred hHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHccCHHHHHHHHHHHHHh
Q 017264 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAE---LFADRAQASIKLQNFTEAVADANRAIEL 65 (374)
Q Consensus 2 a~~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~---~~~~ra~~~~~l~~~~~Al~~~~~al~l 65 (374)
+...+..|..+|...+.++||..+.++|+..++... ++-.++.+|...|+|.+++.++.+=+.+
T Consensus 6 ak~~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~ 72 (80)
T PF10579_consen 6 AKQQIEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLEI 72 (80)
T ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788999999999999999999999999888764 4455667888899999999987666554
No 281
>PRK10743 heat shock protein IbpA; Provisional
Probab=95.92 E-value=0.047 Score=45.60 Aligned_cols=75 Identities=11% Similarity=0.119 Sum_probs=61.0
Q ss_pred Ccccc-ccCCeEEEEEEeCCCCCCceEEEEeeeEEEEEEEcC---CCC----------eeeeccccccccccCceEEEEc
Q 017264 175 RHEFY-QKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVP---GEE----------AYHFQPRLFGKIIPAKCRYEVL 240 (374)
Q Consensus 175 r~~W~-Qt~~~V~i~i~~k~~~~~~v~v~~~~~~l~v~~~~~---~~~----------~y~~~~~L~~~I~p~~s~~~v~ 240 (374)
.++-+ .+++.+.|.+.++|+.++||.|++..+.|+|+.... .+. .|.-.+.|-..|++++ -+..
T Consensus 36 ~~di~ee~~~~~~v~aelPGv~kedi~V~v~~~~LtI~ge~~~~~~~~~~~~~Er~~g~F~R~~~LP~~Vd~~~--A~~~ 113 (137)
T PRK10743 36 PYNVELVDENHYRIAIAVAGFAESELEITAQDNLLVVKGAHADEQKERTYLYQGIAERNFERKFQLAENIHVRG--ANLV 113 (137)
T ss_pred cEEEEEcCCCEEEEEEECCCCCHHHeEEEEECCEEEEEEEECccccCCcEEEEEEECCEEEEEEECCCCcccCc--CEEe
Confidence 36878 489999999999999999999999999999987421 111 3555678999999984 7778
Q ss_pred CcEEEEEEeec
Q 017264 241 STKVEIRLAKA 251 (374)
Q Consensus 241 ~~kiei~L~K~ 251 (374)
..-+.|+|-|.
T Consensus 114 dGVL~I~lPK~ 124 (137)
T PRK10743 114 NGLLYIDLERV 124 (137)
T ss_pred CCEEEEEEeCC
Confidence 88999999986
No 282
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=95.92 E-value=0.012 Score=36.88 Aligned_cols=29 Identities=10% Similarity=0.195 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhC
Q 017264 38 LFADRAQASIKLQNFTEAVADANRAIELE 66 (374)
Q Consensus 38 ~~~~ra~~~~~l~~~~~Al~~~~~al~l~ 66 (374)
+|.++|.+|.++|+|++|+..|++++.+.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~ 29 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALALA 29 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 47899999999999999999999977654
No 283
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=95.89 E-value=0.014 Score=33.96 Aligned_cols=32 Identities=31% Similarity=0.528 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Q 017264 37 ELFADRAQASIKLQNFTEAVADANRAIELEPS 68 (374)
Q Consensus 37 ~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~ 68 (374)
.++..+|.+|..+++++.|+..+.+++.+.|.
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 34667777777777777777777777776654
No 284
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=95.88 E-value=0.14 Score=54.10 Aligned_cols=100 Identities=17% Similarity=0.038 Sum_probs=85.5
Q ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc
Q 017264 5 LEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLE 84 (374)
Q Consensus 5 l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~lg 84 (374)
..-.|..+++.|.+++|+.+++..-...+++-..+-.+-.||..++++++|...|++++..+|+ -+..+.+..+|.+.+
T Consensus 46 ~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~P~-eell~~lFmayvR~~ 124 (932)
T KOG2053|consen 46 KVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLYERANQKYPS-EELLYHLFMAYVREK 124 (932)
T ss_pred HHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCc-HHHHHHHHHHHHHHH
Confidence 4567889999999999997777666667778888888999999999999999999999999999 888999999999999
Q ss_pred CHHHHHHHHHHHHhcCCCChh
Q 017264 85 EYETAKVALEKGASLAPGDSR 105 (374)
Q Consensus 85 ~~~eA~~~~~~a~~l~p~~~~ 105 (374)
.|.+-.+.--+..+..|.++-
T Consensus 125 ~yk~qQkaa~~LyK~~pk~~y 145 (932)
T KOG2053|consen 125 SYKKQQKAALQLYKNFPKRAY 145 (932)
T ss_pred HHHHHHHHHHHHHHhCCcccc
Confidence 998766665566667787764
No 285
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=95.87 E-value=0.081 Score=57.45 Aligned_cols=110 Identities=16% Similarity=0.154 Sum_probs=86.6
Q ss_pred HHHHHhccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHc-------cCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 017264 9 AKEAFIDDYFELAYDLYSQAIEISPNS---AELFADRAQASIKL-------QNFTEAVADANRAIELEPSMSKAYWRKAT 78 (374)
Q Consensus 9 g~~~~~~~~y~~Al~~y~~aL~~~p~~---~~~~~~ra~~~~~l-------~~~~~Al~~~~~al~l~p~~~~a~~~lg~ 78 (374)
.++++..+.|+.|+..|.++-..-|.- .++.+..|.+++.. ..+.+|+.-|++.- -.|.-+--|+.+|.
T Consensus 482 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 560 (932)
T PRK13184 482 PDAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLH-GGVGAPLEYLGKAL 560 (932)
T ss_pred cHHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhc-CCCCCchHHHhHHH
Confidence 467888999999999999988877654 47888888887664 24666666665432 44666778999999
Q ss_pred HHHHhcCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHh
Q 017264 79 ACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAE 119 (374)
Q Consensus 79 ~~~~lg~~~eA~~~~~~a~~l~p~~~~~~~~~~~~~~~l~~ 119 (374)
+|.++|+|++-+.||..|++..|.++.+......+-.++-.
T Consensus 561 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 601 (932)
T PRK13184 561 VYQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHLVYRLHE 601 (932)
T ss_pred HHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHH
Confidence 99999999999999999999999999877766655555443
No 286
>PLN03218 maturation of RBCL 1; Provisional
Probab=95.84 E-value=0.25 Score=54.88 Aligned_cols=88 Identities=11% Similarity=0.021 Sum_probs=42.9
Q ss_pred HHHHhccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCHH
Q 017264 10 KEAFIDDYFELAYDLYSQAIEIS-PNSAELFADRAQASIKLQNFTEAVADANRAIELEP-SMSKAYWRKATACMKLEEYE 87 (374)
Q Consensus 10 ~~~~~~~~y~~Al~~y~~aL~~~-p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p-~~~~a~~~lg~~~~~lg~~~ 87 (374)
..+.+.|++++|+++|..+++.. ..+...|..+..+|.+.|++++|+..|+....... -+...|-.+..+|.+.|+++
T Consensus 657 ~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~e 736 (1060)
T PLN03218 657 DVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLP 736 (1060)
T ss_pred HHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHH
Confidence 34444555555555555544432 22344455555555555555555555555443221 12334445555555555555
Q ss_pred HHHHHHHHHH
Q 017264 88 TAKVALEKGA 97 (374)
Q Consensus 88 eA~~~~~~a~ 97 (374)
+|+..|....
T Consensus 737 eAlelf~eM~ 746 (1060)
T PLN03218 737 KALEVLSEMK 746 (1060)
T ss_pred HHHHHHHHHH
Confidence 5555555443
No 287
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=95.77 E-value=0.22 Score=49.68 Aligned_cols=101 Identities=17% Similarity=0.124 Sum_probs=73.4
Q ss_pred HHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC----------C----------
Q 017264 9 AKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEP----------S---------- 68 (374)
Q Consensus 9 g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p----------~---------- 68 (374)
-..+.+..+.+.-|++-.+||+++|+.+.+|+-+|.-. .....+|...+++|++... .
T Consensus 175 Mq~AWRERnp~aRIkaA~eALei~pdCAdAYILLAEEe--A~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~~ 252 (539)
T PF04184_consen 175 MQKAWRERNPQARIKAAKEALEINPDCADAYILLAEEE--ASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWHR 252 (539)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHhhhhhhHHHhhccccc--ccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhhc
Confidence 34566789999999999999999999999999887531 2334555555555554321 0
Q ss_pred -----CHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC--hhHHHHHH
Q 017264 69 -----MSKAYWRKATACMKLEEYETAKVALEKGASLAPGD--SRFTNLIK 111 (374)
Q Consensus 69 -----~~~a~~~lg~~~~~lg~~~eA~~~~~~a~~l~p~~--~~~~~~~~ 111 (374)
..-+.+++|.|+.++|+.++|+..|+..++..|.. ..++.++-
T Consensus 253 Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLi 302 (539)
T PF04184_consen 253 RDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLI 302 (539)
T ss_pred cccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHH
Confidence 12345689999999999999999999999888753 33444443
No 288
>cd06476 ACD_HspB2_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB2/heat shock 27kDa protein 2 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB2 is preferentially and constitutively expressed in skeletal muscle and heart. HspB2 shows homooligomeric activity and forms aggregates in muscle cytosol. Although its expression is not induced by heat shock, it redistributes to the insoluble fraction in response to heat shock. In the mouse heart, HspB2 plays a role in maintaining energetic balance, by protecting cardiac energetics during ischemia/reperfusion, and allowing for increased work during acute inotropic challenge. hHspB2 [previously also known as myotonic dystrophy protein kinase (DMPK) binding protein (MKBP)] is selectively up-regulated in skeletal muscles from myotonic dystrophy patients.
Probab=95.75 E-value=0.055 Score=41.05 Aligned_cols=70 Identities=16% Similarity=0.127 Sum_probs=55.8
Q ss_pred cCCeEEEEEEeCCCCCCceEEEEeeeEEEEEEEcC---CCC-----eeeeccccccccccCceEEEEc-CcEEEEEEee
Q 017264 181 KPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVP---GEE-----AYHFQPRLFGKIIPAKCRYEVL-STKVEIRLAK 250 (374)
Q Consensus 181 t~~~V~i~i~~k~~~~~~v~v~~~~~~l~v~~~~~---~~~-----~y~~~~~L~~~I~p~~s~~~v~-~~kiei~L~K 250 (374)
.++...|.+.++|+.++++.|++..+.|.|+.... .+. +|.-.+.|...|+++.-+-+.. ...+.|+|-|
T Consensus 5 ~~d~y~v~~dlpG~~~edi~V~v~~~~L~I~g~~~~~~~~~~~~~~eF~R~~~LP~~vd~~~v~A~~~~dGvL~I~~Pr 83 (83)
T cd06476 5 EDDKYQVFLDVCHFTPDEITVRTVDNLLEVSARHPQRMDRHGFVSREFTRTYILPMDVDPLLVRASLSHDGILCIQAPR 83 (83)
T ss_pred cCCeEEEEEEcCCCCHHHeEEEEECCEEEEEEEEcceecCCCEEEEEEEEEEECCCCCChhhEEEEecCCCEEEEEecC
Confidence 46788899999999999999999999999987431 111 2444678999999999999996 7788888754
No 289
>PLN03218 maturation of RBCL 1; Provisional
Probab=95.72 E-value=0.27 Score=54.64 Aligned_cols=89 Identities=10% Similarity=0.088 Sum_probs=41.6
Q ss_pred HHHHHhccCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHh
Q 017264 9 AKEAFIDDYFELAYDLYSQAIEI----SPNSAELFADRAQASIKLQNFTEAVADANRAIELE-PSMSKAYWRKATACMKL 83 (374)
Q Consensus 9 g~~~~~~~~y~~Al~~y~~aL~~----~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~-p~~~~a~~~lg~~~~~l 83 (374)
...+.+.|++++|.++|.+.... .|+ ...|..+..+|.+.|++++|++.|+...+.+ +.+...|..+..+|.+.
T Consensus 549 I~a~~k~G~~deA~~lf~eM~~~~~gi~PD-~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~ 627 (1060)
T PLN03218 549 ISACGQSGAVDRAFDVLAEMKAETHPIDPD-HITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQK 627 (1060)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhcCCCCCc-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhc
Confidence 34444455555555555544431 222 3344444445555555555555555554443 22333444444455555
Q ss_pred cCHHHHHHHHHHHHh
Q 017264 84 EEYETAKVALEKGAS 98 (374)
Q Consensus 84 g~~~eA~~~~~~a~~ 98 (374)
|++++|+..|....+
T Consensus 628 G~~deAl~lf~eM~~ 642 (1060)
T PLN03218 628 GDWDFALSIYDDMKK 642 (1060)
T ss_pred CCHHHHHHHHHHHHH
Confidence 555555555554443
No 290
>cd06481 ACD_HspB9_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB9 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB9 is expressed exclusively in the normal testis and in various tumor samples and is a cancer/testis antigen. hHspB9 interacts with TCTEL1 (T-complex testis expressed protein -1), a subunit of dynein. hHspB9 and TCTEL1 are co-expressed in similar cells within the testis and in tumor cells. Included in this group is Xenopus Hsp30, a developmentally-regulated heat-inducible molecular chaperone.
Probab=95.59 E-value=0.055 Score=41.44 Aligned_cols=68 Identities=15% Similarity=0.202 Sum_probs=53.6
Q ss_pred cCCeEEEEEEeCCCCCCceEEEEeeeEEEEEEEcC-----C-C------CeeeeccccccccccCceEEEE-cCcEEEEE
Q 017264 181 KPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVP-----G-E------EAYHFQPRLFGKIIPAKCRYEV-LSTKVEIR 247 (374)
Q Consensus 181 t~~~V~i~i~~k~~~~~~v~v~~~~~~l~v~~~~~-----~-~------~~y~~~~~L~~~I~p~~s~~~v-~~~kiei~ 247 (374)
..+.+.|.+.++|+.+++|.|++..+.|.|+.... + + ..|.-.+.|...|+++..+..+ ....+.|.
T Consensus 5 ~~d~~~v~~dlpG~~~edI~V~v~~~~L~I~g~~~~~~~~~~~~~~~~~~~F~R~~~LP~~Vd~~~i~A~~~~dGvL~I~ 84 (87)
T cd06481 5 GKEGFSLKLDVRGFSPEDLSVRVDGRKLVVTGKREKKNEDEKGSFSYEYQEFVREAQLPEHVDPEAVTCSLSPSGHLHIR 84 (87)
T ss_pred ccceEEEEEECCCCChHHeEEEEECCEEEEEEEEeeecccCCCcEEEEeeEEEEEEECCCCcChHHeEEEeCCCceEEEE
Confidence 45788999999999999999999999999987421 1 1 2355567899999999988888 56677776
Q ss_pred E
Q 017264 248 L 248 (374)
Q Consensus 248 L 248 (374)
+
T Consensus 85 ~ 85 (87)
T cd06481 85 A 85 (87)
T ss_pred c
Confidence 5
No 291
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=95.49 E-value=0.089 Score=55.98 Aligned_cols=60 Identities=17% Similarity=0.057 Sum_probs=32.4
Q ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q 017264 5 LEKKAKEAFIDDYFELAYDLYSQAIEI--SPNSAELFADRAQASIKLQNFTEAVADANRAIEL 65 (374)
Q Consensus 5 l~~~g~~~~~~~~y~~Al~~y~~aL~~--~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l 65 (374)
+......+.+.|++++|+.+|.+.... .|+ ...|..+..++.++|++++|.+.+..+++.
T Consensus 293 ~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~ 354 (697)
T PLN03081 293 WNSMLAGYALHGYSEEALCLYYEMRDSGVSID-QFTFSIMIRIFSRLALLEHAKQAHAGLIRT 354 (697)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhccchHHHHHHHHHHHHh
Confidence 334455566666666666666665443 222 344555555555555555555555555444
No 292
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=95.48 E-value=0.17 Score=42.60 Aligned_cols=84 Identities=15% Similarity=-0.073 Sum_probs=74.4
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Q 017264 4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKL 83 (374)
Q Consensus 4 ~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~l 83 (374)
.+...........+.+++..++...--+.|+.+++...-|..|+..|++.+|++.++....-.+..+-+--.++.|++.+
T Consensus 12 gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al 91 (153)
T TIGR02561 12 GLIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAK 91 (153)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhc
Confidence 35566667777999999999998877789999999999999999999999999999999998888888888899999999
Q ss_pred cCHH
Q 017264 84 EEYE 87 (374)
Q Consensus 84 g~~~ 87 (374)
|+.+
T Consensus 92 ~Dp~ 95 (153)
T TIGR02561 92 GDAE 95 (153)
T ss_pred CChH
Confidence 9864
No 293
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=95.46 E-value=0.17 Score=39.04 Aligned_cols=49 Identities=12% Similarity=0.161 Sum_probs=33.1
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC
Q 017264 21 AYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSM 69 (374)
Q Consensus 21 Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~ 69 (374)
.+..+.+++..+|.+..+.+.+|.++...|++++|+..+-.+++.++++
T Consensus 7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~ 55 (90)
T PF14561_consen 7 DIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDY 55 (90)
T ss_dssp HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTC
T ss_pred cHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc
Confidence 3455667777777777777777777777777777777777777776654
No 294
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.44 E-value=0.11 Score=49.24 Aligned_cols=87 Identities=15% Similarity=-0.015 Sum_probs=46.0
Q ss_pred HHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHH--------------------------------------HHHHHHHc
Q 017264 8 KAKEAFIDDYFELAYDLYSQAIEISPNSAELFAD--------------------------------------RAQASIKL 49 (374)
Q Consensus 8 ~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~--------------------------------------ra~~~~~l 49 (374)
.+..++-+|++-+|....++.|+-.|.+..++.. +|.++...
T Consensus 109 ~aai~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~ 188 (491)
T KOG2610|consen 109 KAAILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEEC 188 (491)
T ss_pred hHHHhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHh
Confidence 3445556666666666666666666665333322 33444444
Q ss_pred cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHH
Q 017264 50 QNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALE 94 (374)
Q Consensus 50 ~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~ 94 (374)
|-|++|...+++++++++.+..+...++.++...+++.++++.+.
T Consensus 189 g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~ 233 (491)
T KOG2610|consen 189 GIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMY 233 (491)
T ss_pred ccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHH
Confidence 555555555555555555555555555555555555555554444
No 295
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=95.40 E-value=0.25 Score=43.13 Aligned_cols=97 Identities=14% Similarity=0.086 Sum_probs=73.2
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC--CHH----HHH
Q 017264 4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNS---AELFADRAQASIKLQNFTEAVADANRAIELEPS--MSK----AYW 74 (374)
Q Consensus 4 ~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~---~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~--~~~----a~~ 74 (374)
.+...|+.+++.|+++.|++.|.++....... ..+++.+..+.+-.+++.....+..+|-.+-.. +.. ...
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~ 117 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKV 117 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 46789999999999999999999988875433 456666777777789999999988888766432 222 233
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHhcC
Q 017264 75 RKATACMKLEEYETAKVALEKGASLA 100 (374)
Q Consensus 75 ~lg~~~~~lg~~~eA~~~~~~a~~l~ 100 (374)
..|..+...++|..|...|-.+..-.
T Consensus 118 ~~gL~~l~~r~f~~AA~~fl~~~~t~ 143 (177)
T PF10602_consen 118 YEGLANLAQRDFKEAAELFLDSLSTF 143 (177)
T ss_pred HHHHHHHHhchHHHHHHHHHccCcCC
Confidence 45778888999999998887765433
No 296
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=95.40 E-value=0.17 Score=55.89 Aligned_cols=105 Identities=12% Similarity=0.017 Sum_probs=81.3
Q ss_pred HHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHhcC
Q 017264 8 KAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPS--MSKAYWRKATACMKLEE 85 (374)
Q Consensus 8 ~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~--~~~a~~~lg~~~~~lg~ 85 (374)
....|-+.+.|++|.++|+..++.-......|..+|..+++..+-++|...+.+|+..-|. +.+..-..|++-|..|+
T Consensus 1536 L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GD 1615 (1710)
T KOG1070|consen 1536 LLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGD 1615 (1710)
T ss_pred HHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCC
Confidence 3445666777888888888888877777788888888888888888888888888888876 66777778888888888
Q ss_pred HHHHHHHHHHHHhcCCCChhHHHHHHH
Q 017264 86 YETAKVALEKGASLAPGDSRFTNLIKE 112 (374)
Q Consensus 86 ~~eA~~~~~~a~~l~p~~~~~~~~~~~ 112 (374)
.+.+...|+-.+.-+|.-.+++.-+..
T Consensus 1616 aeRGRtlfEgll~ayPKRtDlW~VYid 1642 (1710)
T KOG1070|consen 1616 AERGRTLFEGLLSAYPKRTDLWSVYID 1642 (1710)
T ss_pred chhhHHHHHHHHhhCccchhHHHHHHH
Confidence 888888888888888876665554433
No 297
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=95.34 E-value=0.032 Score=50.15 Aligned_cols=60 Identities=27% Similarity=0.279 Sum_probs=56.3
Q ss_pred HHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC
Q 017264 10 KEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSM 69 (374)
Q Consensus 10 ~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~ 69 (374)
..+.+.+|++.|.++|++||.+-|....-++.+|....+.|+++.|.+.|++.++++|.+
T Consensus 3 ~~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 3 YMLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred chhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence 456788999999999999999999999999999999999999999999999999999864
No 298
>PRK11597 heat shock chaperone IbpB; Provisional
Probab=95.31 E-value=0.092 Score=44.08 Aligned_cols=74 Identities=11% Similarity=0.147 Sum_probs=59.5
Q ss_pred ccccc-cCCeEEEEEEeCCCCCCceEEEEeeeEEEEEEEcC---CC----------CeeeeccccccccccCceEEEEcC
Q 017264 176 HEFYQ-KPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVP---GE----------EAYHFQPRLFGKIIPAKCRYEVLS 241 (374)
Q Consensus 176 ~~W~Q-t~~~V~i~i~~k~~~~~~v~v~~~~~~l~v~~~~~---~~----------~~y~~~~~L~~~I~p~~s~~~v~~ 241 (374)
++=++ +++.+.|++.++|+.+++|.|++..+.|+|+.... .+ ..|.-.+.|-..|+++ +-+...
T Consensus 35 vdI~e~~~~~y~v~adlPGv~kedi~V~v~~~~LtI~ge~~~~~~~~~~~~~Er~~g~F~R~f~LP~~vd~~--~A~~~n 112 (142)
T PRK11597 35 YNIEKSDDNHYRITLALAGFRQEDLDIQLEGTRLTVKGTPEQPEKEVKWLHQGLVNQPFSLSFTLAENMEVS--GATFVN 112 (142)
T ss_pred EEEEEcCCCEEEEEEEeCCCCHHHeEEEEECCEEEEEEEEccccCCCcEEEEEEeCcEEEEEEECCCCcccC--cCEEcC
Confidence 56666 57799999999999999999999999999987531 11 1355567788899988 477788
Q ss_pred cEEEEEEeec
Q 017264 242 TKVEIRLAKA 251 (374)
Q Consensus 242 ~kiei~L~K~ 251 (374)
.-+.|+|-|.
T Consensus 113 GVL~I~lPK~ 122 (142)
T PRK11597 113 GLLHIDLIRN 122 (142)
T ss_pred CEEEEEEecc
Confidence 8999999986
No 299
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.29 E-value=0.59 Score=42.67 Aligned_cols=100 Identities=21% Similarity=0.155 Sum_probs=73.9
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-----CCCHH
Q 017264 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNS------AELFADRAQASIKLQNFTEAVADANRAIELE-----PSMSK 71 (374)
Q Consensus 3 ~~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~------~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~-----p~~~~ 71 (374)
..+...+..+-..++|++|-..+.+|++-..+| +.+|-..|.....+..+.++...|++|..+- |+-+.
T Consensus 32 s~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~GspdtAA 111 (308)
T KOG1585|consen 32 SLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPDTAA 111 (308)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcchHH
Confidence 345666777778899999999999998765544 3556666777778899999999999998763 44444
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCC
Q 017264 72 AYWRKATACMKLEEYETAKVALEKGASLAPG 102 (374)
Q Consensus 72 a~~~lg~~~~~lg~~~eA~~~~~~a~~l~p~ 102 (374)
.-+-++--.....+.++|+..|++++.+-..
T Consensus 112 maleKAak~lenv~Pd~AlqlYqralavve~ 142 (308)
T KOG1585|consen 112 MALEKAAKALENVKPDDALQLYQRALAVVEE 142 (308)
T ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHHHHHhc
Confidence 4455555566777889999999998776443
No 300
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=95.25 E-value=0.11 Score=48.05 Aligned_cols=74 Identities=16% Similarity=0.152 Sum_probs=60.1
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChhHHHHHHH
Q 017264 39 FADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKE 112 (374)
Q Consensus 39 ~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~a~~l~p~~~~~~~~~~~ 112 (374)
..++=.+|.+.++++.|+...++.+.++|.++.-+.-+|.+|.++|.+.-|+..++..++..|+++.+......
T Consensus 184 l~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ir~~ 257 (269)
T COG2912 184 LRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEMIRAQ 257 (269)
T ss_pred HHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHHHHHH
Confidence 33444566777889999999999999999998888889999999999999999999989999988865444433
No 301
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=95.22 E-value=0.19 Score=38.74 Aligned_cols=65 Identities=17% Similarity=0.103 Sum_probs=49.8
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC--hhHHHHHHHHHHHHHh
Q 017264 55 AVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGD--SRFTNLIKECEERIAE 119 (374)
Q Consensus 55 Al~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~a~~l~p~~--~~~~~~~~~~~~~l~~ 119 (374)
.+..++.++..+|++..+.|.+|..+...|+|++|+..|-.+++.+++. ...+..+-.+-..++.
T Consensus 7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~ 73 (90)
T PF14561_consen 7 DIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGP 73 (90)
T ss_dssp HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-T
T ss_pred cHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCC
Confidence 4667889999999999999999999999999999999999999988765 3455555555444443
No 302
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=95.14 E-value=0.098 Score=50.13 Aligned_cols=95 Identities=16% Similarity=0.007 Sum_probs=77.7
Q ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHhCCCC----------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC------CC
Q 017264 5 LEKKAKEAFIDDYFELAYDLYSQAIEISPNS----------AELFADRAQASIKLQNFTEAVADANRAIELE------PS 68 (374)
Q Consensus 5 l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~----------~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~------p~ 68 (374)
....|..+-..+||++|+.+..+|+.+..+- ..+++.++.+|..+|....|.+.++.|.++. +.
T Consensus 165 cv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~ 244 (518)
T KOG1941|consen 165 CVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRAL 244 (518)
T ss_pred hhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHH
Confidence 4567888889999999999999999883221 4567778899999999999999999988764 23
Q ss_pred CHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Q 017264 69 MSKAYWRKATACMKLEEYETAKVALEKGASL 99 (374)
Q Consensus 69 ~~~a~~~lg~~~~~lg~~~eA~~~~~~a~~l 99 (374)
......-+|.+|..+|+.+.|..-|+.+...
T Consensus 245 ~arc~~~~aDIyR~~gd~e~af~rYe~Am~~ 275 (518)
T KOG1941|consen 245 QARCLLCFADIYRSRGDLERAFRRYEQAMGT 275 (518)
T ss_pred HHHHHHHHHHHHHhcccHhHHHHHHHHHHHH
Confidence 4566777899999999999999999987653
No 303
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=95.13 E-value=0.31 Score=48.35 Aligned_cols=105 Identities=19% Similarity=0.220 Sum_probs=49.2
Q ss_pred HhccCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHH
Q 017264 13 FIDDYFELAYDLYSQAIEISPNS----AELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYET 88 (374)
Q Consensus 13 ~~~~~y~~Al~~y~~aL~~~p~~----~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~e 88 (374)
+..+|.+.+.+.|..+|++-|+. +.+++..|...++..+...|...+..||...|.+- .+-.+-.+-.++++++.
T Consensus 377 le~ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~K-lFk~YIelElqL~efDR 455 (677)
T KOG1915|consen 377 LEAEDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDK-LFKGYIELELQLREFDR 455 (677)
T ss_pred HHhhhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchh-HHHHHHHHHHHHhhHHH
Confidence 34455555555555555555543 33444444444455555555555555555554431 11122223344455555
Q ss_pred HHHHHHHHHhcCCCChhHHHHHHHHHHHHH
Q 017264 89 AKVALEKGASLAPGDSRFTNLIKECEERIA 118 (374)
Q Consensus 89 A~~~~~~a~~l~p~~~~~~~~~~~~~~~l~ 118 (374)
....|++.++..|.+-......+.++..|+
T Consensus 456 cRkLYEkfle~~Pe~c~~W~kyaElE~~Lg 485 (677)
T KOG1915|consen 456 CRKLYEKFLEFSPENCYAWSKYAELETSLG 485 (677)
T ss_pred HHHHHHHHHhcChHhhHHHHHHHHHHHHhh
Confidence 555555555555544444444444444433
No 304
>PLN03077 Protein ECB2; Provisional
Probab=95.11 E-value=0.22 Score=54.30 Aligned_cols=103 Identities=16% Similarity=0.141 Sum_probs=68.2
Q ss_pred HHHHHhccCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcC
Q 017264 9 AKEAFIDDYFELAYDLYSQAIEI---SPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEE 85 (374)
Q Consensus 9 g~~~~~~~~y~~Al~~y~~aL~~---~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~lg~ 85 (374)
-..+...|.+++|+.+|+...+. .|+ ...|..+..+|.+.|++++|...++.. .+.|+ ...|-.+-.+|..-++
T Consensus 596 l~a~~~~g~v~ea~~~f~~M~~~~gi~P~-~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~pd-~~~~~aLl~ac~~~~~ 672 (857)
T PLN03077 596 LCACSRSGMVTQGLEYFHSMEEKYSITPN-LKHYACVVDLLGRAGKLTEAYNFINKM-PITPD-PAVWGALLNACRIHRH 672 (857)
T ss_pred HHHHhhcChHHHHHHHHHHHHHHhCCCCc-hHHHHHHHHHHHhCCCHHHHHHHHHHC-CCCCC-HHHHHHHHHHHHHcCC
Confidence 34566778888888888777643 333 466777778888888888888777654 24443 3445555556666677
Q ss_pred HHHHHHHHHHHHhcCCCChhHHHHHHHHH
Q 017264 86 YETAKVALEKGASLAPGDSRFTNLIKECE 114 (374)
Q Consensus 86 ~~eA~~~~~~a~~l~p~~~~~~~~~~~~~ 114 (374)
.+.|....+++++++|++......+..+.
T Consensus 673 ~e~~e~~a~~l~~l~p~~~~~y~ll~n~y 701 (857)
T PLN03077 673 VELGELAAQHIFELDPNSVGYYILLCNLY 701 (857)
T ss_pred hHHHHHHHHHHHhhCCCCcchHHHHHHHH
Confidence 77777777777777777766555554444
No 305
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.09 E-value=0.39 Score=43.49 Aligned_cols=95 Identities=24% Similarity=0.226 Sum_probs=62.2
Q ss_pred HHHHhccCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhCCC------CHHHHHHH
Q 017264 10 KEAFIDDYFELAYDLYSQAIEISPNS------AELFADRAQASIK-LQNFTEAVADANRAIELEPS------MSKAYWRK 76 (374)
Q Consensus 10 ~~~~~~~~y~~Al~~y~~aL~~~p~~------~~~~~~ra~~~~~-l~~~~~Al~~~~~al~l~p~------~~~a~~~l 76 (374)
.-.|+..+..+|+..+.+++++..+- +..+..+|..|.. +.+++.||.+|++|-..-.. --++++..
T Consensus 81 ~~cykk~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKv 160 (288)
T KOG1586|consen 81 ANCYKKVDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKV 160 (288)
T ss_pred HHHhhccChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHH
Confidence 33455557777777777777763322 2233445555543 47788888888877765432 23567777
Q ss_pred HHHHHHhcCHHHHHHHHHHHHhcCCCCh
Q 017264 77 ATACMKLEEYETAKVALEKGASLAPGDS 104 (374)
Q Consensus 77 g~~~~~lg~~~eA~~~~~~a~~l~p~~~ 104 (374)
|..-..+++|.+|+..|++..+..-++.
T Consensus 161 A~yaa~leqY~~Ai~iyeqva~~s~~n~ 188 (288)
T KOG1586|consen 161 AQYAAQLEQYSKAIDIYEQVARSSLDNN 188 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccch
Confidence 7777888888899888888877666655
No 306
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.07 E-value=0.17 Score=46.01 Aligned_cols=94 Identities=21% Similarity=0.270 Sum_probs=50.0
Q ss_pred HHHHHHHHhccCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHccCHHHHHHHHHHHHHh----C--CCCHHHH
Q 017264 6 EKKAKEAFIDDYFELAYDLYSQAIEISPNS------AELFADRAQASIKLQNFTEAVADANRAIEL----E--PSMSKAY 73 (374)
Q Consensus 6 ~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~------~~~~~~ra~~~~~l~~~~~Al~~~~~al~l----~--p~~~~a~ 73 (374)
..+|-.+..+.+.+.|+++|++++..-... .+++...+..|.++++|.+|-..+.+-..+ + +...+++
T Consensus 114 leKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~ 193 (308)
T KOG1585|consen 114 LEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAY 193 (308)
T ss_pred HHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHH
Confidence 344555556666666666666666652221 345555566666666666665544433222 1 2223334
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhc
Q 017264 74 WRKATACMKLEEYETAKVALEKGASL 99 (374)
Q Consensus 74 ~~lg~~~~~lg~~~eA~~~~~~a~~l 99 (374)
...-++|..+.+|..|..||+.+.++
T Consensus 194 va~ilv~L~~~Dyv~aekc~r~~~qi 219 (308)
T KOG1585|consen 194 VAAILVYLYAHDYVQAEKCYRDCSQI 219 (308)
T ss_pred HHHHHHHhhHHHHHHHHHHhcchhcC
Confidence 44444455555777777766665443
No 307
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=95.03 E-value=0.039 Score=54.61 Aligned_cols=78 Identities=13% Similarity=0.143 Sum_probs=68.3
Q ss_pred HHHHHHHHhccCHHHHHHHHHHHHHh---------CC---------CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Q 017264 6 EKKAKEAFIDDYFELAYDLYSQAIEI---------SP---------NSAELFADRAQASIKLQNFTEAVADANRAIELEP 67 (374)
Q Consensus 6 ~~~g~~~~~~~~y~~Al~~y~~aL~~---------~p---------~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p 67 (374)
.+.|..+|+.+.|..++.+|.+||+- .| ...+++++.|..|+..|+.-.|.+.|.+++....
T Consensus 287 NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh 366 (696)
T KOG2471|consen 287 NNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFH 366 (696)
T ss_pred cCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHh
Confidence 46788899999999999999999961 11 2257899999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHh
Q 017264 68 SMSKAYWRKATACMKL 83 (374)
Q Consensus 68 ~~~~a~~~lg~~~~~l 83 (374)
.++..|+|+|.|+...
T Consensus 367 ~nPrlWLRlAEcCima 382 (696)
T KOG2471|consen 367 RNPRLWLRLAECCIMA 382 (696)
T ss_pred cCcHHHHHHHHHHHHH
Confidence 9999999999998653
No 308
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=94.77 E-value=0.73 Score=45.58 Aligned_cols=69 Identities=14% Similarity=0.262 Sum_probs=52.7
Q ss_pred HHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCh----hHHHHHHHHHHHHH
Q 017264 46 SIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDS----RFTNLIKECEERIA 118 (374)
Q Consensus 46 ~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~a~~l~p~~~----~~~~~~~~~~~~l~ 118 (374)
++..|+|.++.-+..-..+++| .+.++..+|.|++...+|.+|..+|.... |++. .++..+.-|++.+.
T Consensus 472 Lysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~LP---~n~~~~dskvqKAl~lCqKh~~ 544 (549)
T PF07079_consen 472 LYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKLP---PNERMRDSKVQKALALCQKHLP 544 (549)
T ss_pred HHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhCC---CchhhHHHHHHHHHHHHHHhhh
Confidence 4556889999998889999999 88999999999999999999999998743 3322 24444455555443
No 309
>cd06482 ACD_HspB10 Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB10, also known as sperm outer dense fiber protein (ODFP), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB10 occurs exclusively in the axoneme of sperm cells and may have a cytoskeletal role.
Probab=94.50 E-value=0.16 Score=38.82 Aligned_cols=66 Identities=18% Similarity=0.149 Sum_probs=51.5
Q ss_pred cCCeEEEEEEeCCCCCCceEEEEeeeEEEEEEEcC------CCCe-----eeeccccccccccCceEEEEcCc-EEEE
Q 017264 181 KPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVP------GEEA-----YHFQPRLFGKIIPAKCRYEVLST-KVEI 246 (374)
Q Consensus 181 t~~~V~i~i~~k~~~~~~v~v~~~~~~l~v~~~~~------~~~~-----y~~~~~L~~~I~p~~s~~~v~~~-kiei 246 (374)
.++.+.|++-++|+.+++|.|++..+.|+|+.... +... |.=.+.|...|++++.+-+.... .+.|
T Consensus 6 ~~~~~~v~adlPG~~kedI~V~v~~~~L~I~ger~~~~e~~~~~er~~g~F~R~f~LP~~Vd~d~i~A~~~~~~~l~i 83 (87)
T cd06482 6 DSSNVLASVDVCGFEPDQVKVKVKDGKVQVSAERENRYDCLGSKKYSYMNICKEFSLPPGVDEKDVTYSYGLGSVVKI 83 (87)
T ss_pred cCCEEEEEEECCCCCHHHeEEEEECCEEEEEEEEecccccCCccEEEEEEEEEEEECCCCcChHHcEEEEcCCCEEEE
Confidence 46789999999999999999999999999997431 1112 33456898999999988888777 5555
No 310
>PF08190 PIH1: pre-RNA processing PIH1/Nop17
Probab=94.49 E-value=0.17 Score=48.55 Aligned_cols=65 Identities=25% Similarity=0.354 Sum_probs=55.0
Q ss_pred cCCeEEEEEEeCCC-CCCceEEEEeeeEEEEEEEcCCCCeeeeccccccccccCceEEEEcC--cEEEEEE
Q 017264 181 KPEEVVVTVFAKGI-PAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVLS--TKVEIRL 248 (374)
Q Consensus 181 t~~~V~i~i~~k~~-~~~~v~v~~~~~~l~v~~~~~~~~~y~~~~~L~~~I~p~~s~~~v~~--~kiei~L 248 (374)
..+.+.|.|.++++ ...++.+++.++.|.|.+... .|.|++.|-++|+++.++-+... ..+.|+|
T Consensus 259 ~p~~lvv~i~LP~~~s~~~i~LdV~~~~l~l~~~~~---~y~L~l~LP~~V~~~~~~Akf~~~~~~L~vtl 326 (328)
T PF08190_consen 259 SPEELVVEIELPGVESASDIDLDVSEDRLSLSSPKP---KYRLDLPLPYPVDEDNGKAKFDKKTKTLTVTL 326 (328)
T ss_pred CCceEEEEEECCCcCccceeEEEEeCCEEEEEeCCC---ceEEEccCCCcccCCCceEEEccCCCEEEEEE
Confidence 47899999999998 569999999999999987632 69999999999999998877655 3677777
No 311
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=94.26 E-value=0.32 Score=45.06 Aligned_cols=75 Identities=17% Similarity=0.177 Sum_probs=67.1
Q ss_pred HHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 017264 6 EKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATAC 80 (374)
Q Consensus 6 ~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~ 80 (374)
.+.=..+...++++.|+....+.|.++|.++.-+.-||.+|.++|.+.-|+.+++..++..|+.+.+-+.++...
T Consensus 185 ~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ir~~l~ 259 (269)
T COG2912 185 RNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEMIRAQLL 259 (269)
T ss_pred HHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 345567889999999999999999999999999999999999999999999999999999999988776665543
No 312
>PLN03077 Protein ECB2; Provisional
Probab=94.15 E-value=0.62 Score=50.85 Aligned_cols=103 Identities=14% Similarity=0.087 Sum_probs=63.2
Q ss_pred HHHHHHHhccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHH
Q 017264 7 KKAKEAFIDDYFELAYDLYSQAIEI--SPNSAELFADRAQASIKLQNFTEAVADANRAIELEPS--MSKAYWRKATACMK 82 (374)
Q Consensus 7 ~~g~~~~~~~~y~~Al~~y~~aL~~--~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~--~~~a~~~lg~~~~~ 82 (374)
.....+...|+.++|+.+|++.++. .|+... |..+-.++.+.|.+++|+..|+......+- +...|.-+..+|.+
T Consensus 559 ~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T-~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r 637 (857)
T PLN03077 559 ILLTGYVAHGKGSMAVELFNRMVESGVNPDEVT-FISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGR 637 (857)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCccc-HHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHh
Confidence 3445566777777777777776653 454333 444445666777777777777777643221 23456667777777
Q ss_pred hcCHHHHHHHHHHHHhcCCCChhHHHHHH
Q 017264 83 LEEYETAKVALEKGASLAPGDSRFTNLIK 111 (374)
Q Consensus 83 lg~~~eA~~~~~~a~~l~p~~~~~~~~~~ 111 (374)
.|++++|...+++. .+.|+...+...+.
T Consensus 638 ~G~~~eA~~~~~~m-~~~pd~~~~~aLl~ 665 (857)
T PLN03077 638 AGKLTEAYNFINKM-PITPDPAVWGALLN 665 (857)
T ss_pred CCCHHHHHHHHHHC-CCCCCHHHHHHHHH
Confidence 88888887777764 35555443333333
No 313
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=94.14 E-value=0.37 Score=37.27 Aligned_cols=56 Identities=20% Similarity=0.253 Sum_probs=31.0
Q ss_pred HHHhccCHHHHHHHHHHHHHhCCCC---------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Q 017264 11 EAFIDDYFELAYDLYSQAIEISPNS---------AELFADRAQASIKLQNFTEAVADANRAIELE 66 (374)
Q Consensus 11 ~~~~~~~y~~Al~~y~~aL~~~p~~---------~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~ 66 (374)
.....+||..|++.+.+.+...... ..++.++|.++...|++++|+..++.|+.+.
T Consensus 7 ~~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~A 71 (94)
T PF12862_consen 7 NALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLA 71 (94)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 4456666766666665555541111 2344555556666666666666666666554
No 314
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=94.12 E-value=1.5 Score=42.87 Aligned_cols=108 Identities=17% Similarity=0.099 Sum_probs=77.4
Q ss_pred HHHHHHHHh---ccCHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHc---------cCHHHHHHHHHHHHHhCCCCH--
Q 017264 6 EKKAKEAFI---DDYFELAYDLYSQAIE-ISPNSAELFADRAQASIKL---------QNFTEAVADANRAIELEPSMS-- 70 (374)
Q Consensus 6 ~~~g~~~~~---~~~y~~Al~~y~~aL~-~~p~~~~~~~~ra~~~~~l---------~~~~~Al~~~~~al~l~p~~~-- 70 (374)
+..|.++.+ .|+.+.|+..+..++. ..+.+++.+.-+|.+|-.+ ..+..|+..|.++++++|+.-
T Consensus 183 ~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y~G 262 (374)
T PF13281_consen 183 FQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDYYSG 262 (374)
T ss_pred HHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccccch
Confidence 456777777 8999999999988544 5667789899888888443 357889999999998876310
Q ss_pred -------------------------------------------HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChhHH
Q 017264 71 -------------------------------------------KAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFT 107 (374)
Q Consensus 71 -------------------------------------------~a~~~lg~~~~~lg~~~eA~~~~~~a~~l~p~~~~~~ 107 (374)
..+-.++.+..-.|+++.|..++++++.+.|..=.+.
T Consensus 263 IN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W~l~ 342 (374)
T PF13281_consen 263 INAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPAWELE 342 (374)
T ss_pred HHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcchhHH
Confidence 0112245556668888999999999998887655444
Q ss_pred HHHHHH
Q 017264 108 NLIKEC 113 (374)
Q Consensus 108 ~~~~~~ 113 (374)
..+..+
T Consensus 343 St~~ni 348 (374)
T PF13281_consen 343 STLENI 348 (374)
T ss_pred HHHHHH
Confidence 444433
No 315
>cd06477 ACD_HspB3_Like Alpha crystallin domain (ACD) found in mammalian HspB3, also known as heat-shock protein 27-like protein (HSPL27, 17-kDa) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB3 is expressed in adult skeletal muscle, smooth muscle, and heart, and in several other fetal tissues. In muscle cells HspB3 forms an oligomeric 150 kDa complex with myotonic dystrophy protein kinase-binding protein (MKBP/ HspB2), this complex may comprise one of two independent muscle-cell specific chaperone systems. The expression of HspB3 is induced during muscle differentiation controlled by the myogenic factor MyoD. HspB3 may also interact with Hsp22 (HspB8).
Probab=93.88 E-value=0.45 Score=36.05 Aligned_cols=68 Identities=7% Similarity=-0.009 Sum_probs=51.6
Q ss_pred ccCCeEEEEEEeCCCCCCceEEEEeeeEEEEEEEcC---CCC-----eeeeccccccccccCceEEEE-cCcEEEEE
Q 017264 180 QKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVP---GEE-----AYHFQPRLFGKIIPAKCRYEV-LSTKVEIR 247 (374)
Q Consensus 180 Qt~~~V~i~i~~k~~~~~~v~v~~~~~~l~v~~~~~---~~~-----~y~~~~~L~~~I~p~~s~~~v-~~~kiei~ 247 (374)
.+++...|.+-++|+.++++.|++..+.|+|+.... .+. .|.-.+.|...|+++..+-+. ...-+.|.
T Consensus 4 e~~~~~~v~~dlpG~~~edI~V~v~~~~L~I~ge~~~~~~~~~~~~r~F~R~~~LP~~Vd~~~v~A~~~~dGvL~I~ 80 (83)
T cd06477 4 EGKPMFQILLDVVQFRPEDIIIQVFEGWLLIKGQHGVRMDEHGFISRSFTRQYQLPDGVEHKDLSAMLCHDGILVVE 80 (83)
T ss_pred cCCceEEEEEEcCCCCHHHeEEEEECCEEEEEEEEccccCCCCEEEEEEEEEEECCCCcchheEEEEEcCCCEEEEE
Confidence 467889999999999999999999999999997531 111 244456788999999887776 35555554
No 316
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=93.83 E-value=0.45 Score=39.37 Aligned_cols=72 Identities=13% Similarity=0.105 Sum_probs=57.6
Q ss_pred HHHHHHHHHHhccC---HHHHHHHHHHHHH-hCCCC-HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHH
Q 017264 4 DLEKKAKEAFIDDY---FELAYDLYSQAIE-ISPNS-AELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWR 75 (374)
Q Consensus 4 ~l~~~g~~~~~~~~---y~~Al~~y~~aL~-~~p~~-~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~ 75 (374)
..|+.|-.+....+ -++.|.++...++ ..|.. -+.++++|..|+++++|+.++++++..++..|++..+.-.
T Consensus 34 s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~L 110 (149)
T KOG3364|consen 34 SQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALEL 110 (149)
T ss_pred HHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHH
Confidence 45677777776655 4678899999986 44443 4678889999999999999999999999999998876543
No 317
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=93.80 E-value=0.15 Score=32.24 Aligned_cols=28 Identities=21% Similarity=0.234 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHh
Q 017264 38 LFADRAQASIKLQNFTEAVADANRAIEL 65 (374)
Q Consensus 38 ~~~~ra~~~~~l~~~~~Al~~~~~al~l 65 (374)
.+.++|.+|..+|++++|+..+.+++.+
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 4455555555555555555555555543
No 318
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=93.68 E-value=1 Score=50.18 Aligned_cols=99 Identities=14% Similarity=0.066 Sum_probs=91.5
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 017264 4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPN--SAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACM 81 (374)
Q Consensus 4 ~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~--~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~ 81 (374)
-+...|..++.+.+-++|..++.+||+.-|. +..+....|+.-++.|+.+++...|+-.+.-.|.-.+.|..+...-.
T Consensus 1566 vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~ei 1645 (1710)
T KOG1070|consen 1566 VWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEI 1645 (1710)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHH
Confidence 3567889999999999999999999999888 78899999999999999999999999999999999999999999999
Q ss_pred HhcCHHHHHHHHHHHHhcCCC
Q 017264 82 KLEEYETAKVALEKGASLAPG 102 (374)
Q Consensus 82 ~lg~~~eA~~~~~~a~~l~p~ 102 (374)
..|+.+-....|++++.+.=.
T Consensus 1646 k~~~~~~vR~lfeRvi~l~l~ 1666 (1710)
T KOG1070|consen 1646 KHGDIKYVRDLFERVIELKLS 1666 (1710)
T ss_pred ccCCHHHHHHHHHHHHhcCCC
Confidence 999999999999999887643
No 319
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=93.67 E-value=0.17 Score=47.50 Aligned_cols=85 Identities=13% Similarity=0.110 Sum_probs=71.5
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHH-HHHHHHHhcCHHHHHHHHHHHHhcCCCC
Q 017264 25 YSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWR-KATACMKLEEYETAKVALEKGASLAPGD 103 (374)
Q Consensus 25 y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~-lg~~~~~lg~~~eA~~~~~~a~~l~p~~ 103 (374)
|.++-..-++++.+|...+.--.+.+.|.+-...|..++..+|.+.+.|.. .+.-++..+++..+...|.++++++|++
T Consensus 96 ~~R~tnkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~ 175 (435)
T COG5191 96 LYRSTNKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRS 175 (435)
T ss_pred eehhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCC
Confidence 444445567888888888877778889999999999999999999999988 5667888999999999999999999999
Q ss_pred hhHHHH
Q 017264 104 SRFTNL 109 (374)
Q Consensus 104 ~~~~~~ 109 (374)
+.++..
T Consensus 176 p~iw~e 181 (435)
T COG5191 176 PRIWIE 181 (435)
T ss_pred chHHHH
Confidence 865443
No 320
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=93.60 E-value=0.018 Score=54.55 Aligned_cols=73 Identities=19% Similarity=0.272 Sum_probs=63.7
Q ss_pred HHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHh
Q 017264 47 IKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAE 119 (374)
Q Consensus 47 ~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~a~~l~p~~~~~~~~~~~~~~~l~~ 119 (374)
+..|.++.|++.|..+|.++|.....|-.++.++..+++...|+..|..++.++|+...-..|...++..|..
T Consensus 125 ln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~ 197 (377)
T KOG1308|consen 125 LNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGN 197 (377)
T ss_pred hcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhc
Confidence 3458899999999999999999999999999999999999999999999999999987666666655555444
No 321
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=93.57 E-value=0.34 Score=49.22 Aligned_cols=74 Identities=19% Similarity=0.122 Sum_probs=66.5
Q ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 017264 5 LEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKAT 78 (374)
Q Consensus 5 l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~ 78 (374)
+.+.|+.+...+-...|-.++.++|.+....+..++.+|.+|+.+++...|++.+..|+.++|+++.+.-.+-.
T Consensus 645 ~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~~~~~~~~~~l~~ 718 (886)
T KOG4507|consen 645 LVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALEAFRQALKLTTKCPECENSLKL 718 (886)
T ss_pred HHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHHHHHHHHhcCCCChhhHHHHHH
Confidence 56889999999999999999999999998889999999999999999999999999999999998776554433
No 322
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=93.52 E-value=1.9 Score=41.18 Aligned_cols=118 Identities=18% Similarity=0.134 Sum_probs=90.9
Q ss_pred hHHHHHHHHHHHhccCHHHHHHHHHHHHHhCC----CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--C-C-------
Q 017264 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISP----NSAELFADRAQASIKLQNFTEAVADANRAIEL--E-P------- 67 (374)
Q Consensus 2 a~~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p----~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l--~-p------- 67 (374)
+..+...+..+.+.|.|+.|...+.++....+ ..+.+.+..|..+-..|+..+|+..+...+.. . .
T Consensus 146 ~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~ 225 (352)
T PF02259_consen 146 AETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNA 225 (352)
T ss_pred HHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHH
Confidence 34567889999999999999999999888642 14677888899999999999999988887761 0 0
Q ss_pred ------------------------CCHHHHHHHHHHHHHh------cCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Q 017264 68 ------------------------SMSKAYWRKATACMKL------EEYETAKVALEKGASLAPGDSRFTNLIKECEERI 117 (374)
Q Consensus 68 ------------------------~~~~a~~~lg~~~~~l------g~~~eA~~~~~~a~~l~p~~~~~~~~~~~~~~~l 117 (374)
..+++++.+|.....+ +.+++++..|..+..++|.........+.....+
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~~ 305 (352)
T PF02259_consen 226 ELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFNDKL 305 (352)
T ss_pred HHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHH
Confidence 1255777888888777 8899999999999999997776555555544444
Q ss_pred Hh
Q 017264 118 AE 119 (374)
Q Consensus 118 ~~ 119 (374)
-.
T Consensus 306 ~~ 307 (352)
T PF02259_consen 306 LE 307 (352)
T ss_pred HH
Confidence 33
No 323
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=93.50 E-value=1 Score=43.97 Aligned_cols=79 Identities=15% Similarity=0.082 Sum_probs=65.7
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------------CCC---------------CHHHHHHHH
Q 017264 27 QAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIEL--------------EPS---------------MSKAYWRKA 77 (374)
Q Consensus 27 ~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l--------------~p~---------------~~~a~~~lg 77 (374)
..|..+|.+...+..++.++..+|++..|...+++||-. +.. .-.++++..
T Consensus 31 ~ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i 110 (360)
T PF04910_consen 31 NLLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYI 110 (360)
T ss_pred HHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHH
Confidence 345678999999999999999999999999998888722 111 134678889
Q ss_pred HHHHHhcCHHHHHHHHHHHHhcCCC-Chh
Q 017264 78 TACMKLEEYETAKVALEKGASLAPG-DSR 105 (374)
Q Consensus 78 ~~~~~lg~~~eA~~~~~~a~~l~p~-~~~ 105 (374)
..+.+.|-+..|+++++-.+.++|. |+-
T Consensus 111 ~~L~~RG~~rTAlE~~KlLlsLdp~~DP~ 139 (360)
T PF04910_consen 111 QSLGRRGCWRTALEWCKLLLSLDPDEDPL 139 (360)
T ss_pred HHHHhcCcHHHHHHHHHHHHhcCCCCCcc
Confidence 9999999999999999999999999 664
No 324
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=93.26 E-value=1.1 Score=45.60 Aligned_cols=102 Identities=19% Similarity=0.051 Sum_probs=81.9
Q ss_pred HHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHH-HHHHHhCCCCHHHHHHH------HHHHH
Q 017264 9 AKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADA-NRAIELEPSMSKAYWRK------ATACM 81 (374)
Q Consensus 9 g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~-~~al~l~p~~~~a~~~l------g~~~~ 81 (374)
...+..-++...+......++..+|.++.++.+++.+....|....++..+ +.+....|++..+...+ |..+.
T Consensus 74 si~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (620)
T COG3914 74 SILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISEIAEWLSPDNAEFLGHLIRFYQLGRYLK 153 (620)
T ss_pred HhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcchHHHHhhHHHHHHHHHHHH
Confidence 445556677778888899999999999999999999988887766666655 45888889877665554 88888
Q ss_pred HhcCHHHHHHHHHHHHhcCCCChhHHHHH
Q 017264 82 KLEEYETAKVALEKGASLAPGDSRFTNLI 110 (374)
Q Consensus 82 ~lg~~~eA~~~~~~a~~l~p~~~~~~~~~ 110 (374)
.+|+..++..+++++..+.|.++.+...+
T Consensus 154 ~l~~~~~~~~~l~~~~d~~p~~~~~~~~~ 182 (620)
T COG3914 154 LLGRTAEAELALERAVDLLPKYPRVLGAL 182 (620)
T ss_pred HhccHHHHHHHHHHHHHhhhhhhhhHhHH
Confidence 89999999999999999999987654443
No 325
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=93.16 E-value=2.8 Score=39.18 Aligned_cols=96 Identities=16% Similarity=-0.041 Sum_probs=73.9
Q ss_pred HHHHHHHHHHh----ccCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcc-------CHHHHHHHHHHHHHhCCCCHH
Q 017264 4 DLEKKAKEAFI----DDYFELAYDLYSQAIEISPNS-AELFADRAQASIKLQ-------NFTEAVADANRAIELEPSMSK 71 (374)
Q Consensus 4 ~l~~~g~~~~~----~~~y~~Al~~y~~aL~~~p~~-~~~~~~ra~~~~~l~-------~~~~Al~~~~~al~l~p~~~~ 71 (374)
.++..|..++. ..|+.+|+.+|.+|....-.. ..+.+.++.+|..-. +...|+..+.++.... +..
T Consensus 111 a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~--~~~ 188 (292)
T COG0790 111 ALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG--NPD 188 (292)
T ss_pred HHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc--CHH
Confidence 45667777776 559999999999999985443 344777888876631 2336888888888777 888
Q ss_pred HHHHHHHHHHH----hcCHHHHHHHHHHHHhcCC
Q 017264 72 AYWRKATACMK----LEEYETAKVALEKGASLAP 101 (374)
Q Consensus 72 a~~~lg~~~~~----lg~~~eA~~~~~~a~~l~p 101 (374)
+.+++|.+|.. ..++.+|..+|.++.+...
T Consensus 189 a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~ 222 (292)
T COG0790 189 AQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD 222 (292)
T ss_pred HHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC
Confidence 99999988865 4588999999999988776
No 326
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=93.09 E-value=1.2 Score=47.13 Aligned_cols=96 Identities=16% Similarity=0.099 Sum_probs=72.2
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHH----------HHhCCCCH----------HHHHHHHHHHHHccCHHHHHHHHHHHH
Q 017264 4 DLEKKAKEAFIDDYFELAYDLYSQA----------IEISPNSA----------ELFADRAQASIKLQNFTEAVADANRAI 63 (374)
Q Consensus 4 ~l~~~g~~~~~~~~y~~Al~~y~~a----------L~~~p~~~----------~~~~~ra~~~~~l~~~~~Al~~~~~al 63 (374)
.+.+.|..+-.++|...||++|.++ |..+|... .+|.--|.-+...|+.+.|+..|..|-
T Consensus 860 Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~ 939 (1416)
T KOG3617|consen 860 TYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAK 939 (1416)
T ss_pred hHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhh
Confidence 4677888888899999999999763 33344443 344445666667799999999988664
Q ss_pred Hh---------------------CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Q 017264 64 EL---------------------EPSMSKAYWRKATACMKLEEYETAKVALEKGASL 99 (374)
Q Consensus 64 ~l---------------------~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~a~~l 99 (374)
.. ...+..+.|.+|..|.+.|++.+|+..|.++..+
T Consensus 940 D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqaf 996 (1416)
T KOG3617|consen 940 DYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVKFFTRAQAF 996 (1416)
T ss_pred hhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 32 2346778999999999999999999999987544
No 327
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=92.87 E-value=0.5 Score=36.54 Aligned_cols=56 Identities=23% Similarity=0.333 Sum_probs=45.9
Q ss_pred HHHccCHHHHHHHHHHHHHhCCC---------CHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC
Q 017264 46 SIKLQNFTEAVADANRAIELEPS---------MSKAYWRKATACMKLEEYETAKVALEKGASLAP 101 (374)
Q Consensus 46 ~~~l~~~~~Al~~~~~al~l~p~---------~~~a~~~lg~~~~~lg~~~eA~~~~~~a~~l~p 101 (374)
..+.++|.+|+..+.+.+..... ..-+++.+|.++...|++++|+..++.++++..
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Ar 72 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLAR 72 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 35789999999988888865431 245788899999999999999999999998754
No 328
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=92.83 E-value=0.41 Score=40.18 Aligned_cols=48 Identities=19% Similarity=0.239 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc
Q 017264 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQ 50 (374)
Q Consensus 3 ~~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~ 50 (374)
+.++..+..++..|+|.-|+++.+.++..+|++..+...++.+|.+++
T Consensus 71 d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg 118 (141)
T PF14863_consen 71 DKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLG 118 (141)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHH
Confidence 345566666666666666666666666666666666666666665554
No 329
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=92.70 E-value=1.7 Score=41.50 Aligned_cols=98 Identities=26% Similarity=0.137 Sum_probs=74.0
Q ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHh-CC-C-------------------------C-------HHHHHHHHHHHHHc-
Q 017264 5 LEKKAKEAFIDDYFELAYDLYSQAIEI-SP-N-------------------------S-------AELFADRAQASIKL- 49 (374)
Q Consensus 5 l~~~g~~~~~~~~y~~Al~~y~~aL~~-~p-~-------------------------~-------~~~~~~ra~~~~~l- 49 (374)
.+..+..+...|+..+|+..+...+.. .. . . +.++..+|.-...+
T Consensus 187 ~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~ 266 (352)
T PF02259_consen 187 FLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELY 266 (352)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhc
Confidence 456788999999999999999888881 11 0 1 23444555555555
Q ss_pred -----cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCH-----------------HHHHHHHHHHHhcCCC
Q 017264 50 -----QNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEY-----------------ETAKVALEKGASLAPG 102 (374)
Q Consensus 50 -----~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~lg~~-----------------~eA~~~~~~a~~l~p~ 102 (374)
+.+++++..|..|+.++|...++|+.+|..+..+-+. ..|+.+|-+++.+.+.
T Consensus 267 ~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~y~~al~~~~~ 341 (352)
T PF02259_consen 267 SKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFNDKLLESDPREKEESSQEDRSEYLEQAIEGYLKALSLGSK 341 (352)
T ss_pred cccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHhhhhcccccchhHHHHHHHHHHHHHHHHHhhCCC
Confidence 7788889999999999999999999999988765222 3477888888888776
No 330
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=92.61 E-value=2.3 Score=39.32 Aligned_cols=102 Identities=11% Similarity=0.036 Sum_probs=84.7
Q ss_pred hccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHH-HHHH
Q 017264 14 IDDYFELAYDLYSQAIEISPNSAELFADRAQASIKL-QNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYE-TAKV 91 (374)
Q Consensus 14 ~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l-~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~-eA~~ 91 (374)
+...-+.|+.+...+|.++|.+...+..|=.|+..+ .+..+-+.++...++-+|.+-.+|..+-.+..-+|++. .-+.
T Consensus 55 ~~E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rELe 134 (318)
T KOG0530|consen 55 KNEKSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFRELE 134 (318)
T ss_pred ccccCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccchHH
Confidence 445568899999999999999999998888888776 46778889999999999999999999999999999988 8888
Q ss_pred HHHHHHhcCCCChhHHHHHHHHHH
Q 017264 92 ALEKGASLAPGDSRFTNLIKECEE 115 (374)
Q Consensus 92 ~~~~a~~l~p~~~~~~~~~~~~~~ 115 (374)
.....+..+..|-.+.+..+.|-.
T Consensus 135 f~~~~l~~DaKNYHaWshRqW~~r 158 (318)
T KOG0530|consen 135 FTKLMLDDDAKNYHAWSHRQWVLR 158 (318)
T ss_pred HHHHHHhccccchhhhHHHHHHHH
Confidence 899998887776655554444443
No 331
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=92.54 E-value=1.8 Score=42.29 Aligned_cols=97 Identities=12% Similarity=-0.035 Sum_probs=73.8
Q ss_pred HHHHHHHhccCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHH---ccCHHHHHHHHHHHHH-hCCCCHHHHHHHHH
Q 017264 7 KKAKEAFIDDYFELAYDLYSQAIEI----SPNSAELFADRAQASIK---LQNFTEAVADANRAIE-LEPSMSKAYWRKAT 78 (374)
Q Consensus 7 ~~g~~~~~~~~y~~Al~~y~~aL~~----~p~~~~~~~~ra~~~~~---l~~~~~Al~~~~~al~-l~p~~~~a~~~lg~ 78 (374)
+.-..|-...+|+.=+.+.+..-.+ .++...+.+.+|.++.+ .|+.++|++.+..++. ..+.+++.+..+|.
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 3444566778888888887665444 34456778888999999 8999999999988554 45678888888888
Q ss_pred HHHH---------hcCHHHHHHHHHHHHhcCCCC
Q 017264 79 ACMK---------LEEYETAKVALEKGASLAPGD 103 (374)
Q Consensus 79 ~~~~---------lg~~~eA~~~~~~a~~l~p~~ 103 (374)
+|.. ....+.|+.+|.++.+++|+.
T Consensus 226 IyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~ 259 (374)
T PF13281_consen 226 IYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDY 259 (374)
T ss_pred HHHHHHHHcCccchHHHHHHHHHHHHHHcCCccc
Confidence 8854 234689999999999998653
No 332
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=92.50 E-value=0.31 Score=30.79 Aligned_cols=30 Identities=30% Similarity=0.369 Sum_probs=26.7
Q ss_pred hHHHHHHHHHHHhccCHHHHHHHHHHHHHh
Q 017264 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEI 31 (374)
Q Consensus 2 a~~l~~~g~~~~~~~~y~~Al~~y~~aL~~ 31 (374)
+..+.+.|..++..|+|++|+.++.+++..
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 567889999999999999999999999886
No 333
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=92.41 E-value=2.1 Score=36.59 Aligned_cols=84 Identities=14% Similarity=0.118 Sum_probs=71.6
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Q 017264 37 ELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEER 116 (374)
Q Consensus 37 ~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~a~~l~p~~~~~~~~~~~~~~~ 116 (374)
..++.+..+-.+.++.+++...+.-.-.+.|..+..-+.-|.++...|+|.+|+..|+.+..-.|..+.....++.|...
T Consensus 11 ~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~ 90 (160)
T PF09613_consen 11 GGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYA 90 (160)
T ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHH
Confidence 45566666777788999999988888889999999999999999999999999999999988888888888888888765
Q ss_pred HHhh
Q 017264 117 IAEE 120 (374)
Q Consensus 117 l~~~ 120 (374)
++..
T Consensus 91 ~~D~ 94 (160)
T PF09613_consen 91 LGDP 94 (160)
T ss_pred cCCh
Confidence 5443
No 334
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.15 E-value=1.1 Score=42.89 Aligned_cols=101 Identities=16% Similarity=0.060 Sum_probs=77.2
Q ss_pred HHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHh
Q 017264 8 KAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPS----MSKAYWRKATACMKL 83 (374)
Q Consensus 8 ~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~----~~~a~~~lg~~~~~l 83 (374)
.+.-+..-|-|++|.+..+++|++++.+..+....|.++...+++.++++...+--..-.+ ...-|...|.++..-
T Consensus 181 yaFgL~E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~ 260 (491)
T KOG2610|consen 181 YAFGLEECGIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEG 260 (491)
T ss_pred HHhhHHHhccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcc
Confidence 4556678899999999999999999999999999999999999999999876544322211 122345568888888
Q ss_pred cCHHHHHHHHHHHH--hcCCCChhHHH
Q 017264 84 EEYETAKVALEKGA--SLAPGDSRFTN 108 (374)
Q Consensus 84 g~~~eA~~~~~~a~--~l~p~~~~~~~ 108 (374)
++|+.|+..|.+-+ ++.-++...+.
T Consensus 261 aeye~aleIyD~ei~k~l~k~Da~a~~ 287 (491)
T KOG2610|consen 261 AEYEKALEIYDREIWKRLEKDDAVARD 287 (491)
T ss_pred cchhHHHHHHHHHHHHHhhccchhhhh
Confidence 99999999998643 55555554333
No 335
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=92.11 E-value=1.9 Score=42.08 Aligned_cols=90 Identities=19% Similarity=0.212 Sum_probs=71.1
Q ss_pred HHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHH--HHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Q 017264 6 EKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQ--ASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKL 83 (374)
Q Consensus 6 ~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~--~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~l 83 (374)
.-.+...+..|+|+.|.+-|+..+. +|.. ..+-.||. .-.++|..+.|+++++.+....|..+.++.-.=...+..
T Consensus 124 lLeAQaal~eG~~~~Ar~kfeAMl~-dPEt-RllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~ 201 (531)
T COG3898 124 LLEAQAALLEGDYEDARKKFEAMLD-DPET-RLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAA 201 (531)
T ss_pred HHHHHHHHhcCchHHHHHHHHHHhc-ChHH-HHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhc
Confidence 3467788899999999999976543 5553 22333432 235679999999999999999999998888888888999
Q ss_pred cCHHHHHHHHHHHH
Q 017264 84 EEYETAKVALEKGA 97 (374)
Q Consensus 84 g~~~eA~~~~~~a~ 97 (374)
|+++.|+...+...
T Consensus 202 gdWd~AlkLvd~~~ 215 (531)
T COG3898 202 GDWDGALKLVDAQR 215 (531)
T ss_pred CChHHHHHHHHHHH
Confidence 99999999887643
No 336
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=92.10 E-value=2.9 Score=34.02 Aligned_cols=83 Identities=13% Similarity=0.072 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHH--ccCHHHHHHHHHHHHHhCCC------------CHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC--
Q 017264 37 ELFADRAQASIK--LQNFTEAVADANRAIELEPS------------MSKAYWRKATACMKLEEYETAKVALEKGASLA-- 100 (374)
Q Consensus 37 ~~~~~ra~~~~~--l~~~~~Al~~~~~al~l~p~------------~~~a~~~lg~~~~~lg~~~eA~~~~~~a~~l~-- 100 (374)
.+|..++..-.+ -|.|++|...|.+|...... ++-+|-.|+.++..+|+|++++....+++...
T Consensus 8 ~aY~aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNR 87 (144)
T PF12968_consen 8 MAYMALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNR 87 (144)
T ss_dssp HHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhh
Confidence 455666555444 38899999999999987643 24467788999999999999998888877642
Q ss_pred ---CCChhHHHHHHHHHHHHHh
Q 017264 101 ---PGDSRFTNLIKECEERIAE 119 (374)
Q Consensus 101 ---p~~~~~~~~~~~~~~~l~~ 119 (374)
-+......|++-+..+-..
T Consensus 88 RGEL~qdeGklWIaaVfsra~A 109 (144)
T PF12968_consen 88 RGELHQDEGKLWIAAVFSRAVA 109 (144)
T ss_dssp H--TTSTHHHHHHHHHHHHHHH
T ss_pred ccccccccchhHHHHHHHHHHH
Confidence 2334578888777665433
No 337
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=91.97 E-value=2 Score=40.20 Aligned_cols=64 Identities=22% Similarity=0.177 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Q 017264 36 AELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASL 99 (374)
Q Consensus 36 ~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~a~~l 99 (374)
..++..++..+...++++.++..+++.+.++|-+-.+|.++=.+|+..|+...|+..|.+..++
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~ 216 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT 216 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence 4677788888888999999999999999999999999999999999999999999999987764
No 338
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=91.96 E-value=2.5 Score=43.63 Aligned_cols=110 Identities=18% Similarity=0.155 Sum_probs=84.5
Q ss_pred HHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-----CCHHHHHHHHHHHHH
Q 017264 8 KAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEP-----SMSKAYWRKATACMK 82 (374)
Q Consensus 8 ~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p-----~~~~a~~~lg~~~~~ 82 (374)
.+...-.-|-++..-..|++.|.+.=..+....|.|..+....-|++|.+.|++.+.|.+ +....|+..++.-|.
T Consensus 483 y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~ryg 562 (835)
T KOG2047|consen 483 YADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYG 562 (835)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhc
Confidence 344455567778888899999999888899999999999999999999999999999875 244566777888777
Q ss_pred hcCHHHHHHHHHHHHhcCCCCh--hHHHHHHHHHHHH
Q 017264 83 LEEYETAKVALEKGASLAPGDS--RFTNLIKECEERI 117 (374)
Q Consensus 83 lg~~~eA~~~~~~a~~l~p~~~--~~~~~~~~~~~~l 117 (374)
-...+.|...|++|+...|..- .+...+++++.+.
T Consensus 563 g~klEraRdLFEqaL~~Cpp~~aKtiyLlYA~lEEe~ 599 (835)
T KOG2047|consen 563 GTKLERARDLFEQALDGCPPEHAKTIYLLYAKLEEEH 599 (835)
T ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Confidence 7888999999999999888322 2333345554443
No 339
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=91.91 E-value=4.2 Score=39.73 Aligned_cols=97 Identities=19% Similarity=0.142 Sum_probs=68.5
Q ss_pred HHHhccCHHHHHHHHHHHHHh---CCCC-----HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 017264 11 EAFIDDYFELAYDLYSQAIEI---SPNS-----AELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK 82 (374)
Q Consensus 11 ~~~~~~~y~~Al~~y~~aL~~---~p~~-----~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~ 82 (374)
..+..|+|+.||++.+..... .++- ..++...+..+.. -+...|..++..+++|.|+..-+-..-+.+|+.
T Consensus 197 ~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ld-adp~~Ar~~A~~a~KL~pdlvPaav~AAralf~ 275 (531)
T COG3898 197 ARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLD-ADPASARDDALEANKLAPDLVPAAVVAARALFR 275 (531)
T ss_pred HHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhc-CChHHHHHHHHHHhhcCCccchHHHHHHHHHHh
Confidence 456777888888877665543 2221 1222223332222 346678888889999999999899999999999
Q ss_pred hcCHHHHHHHHHHHHhcCCCChhHHHH
Q 017264 83 LEEYETAKVALEKGASLAPGDSRFTNL 109 (374)
Q Consensus 83 lg~~~eA~~~~~~a~~l~p~~~~~~~~ 109 (374)
.|+..++-..++.+.+..|. +.+...
T Consensus 276 d~~~rKg~~ilE~aWK~ePH-P~ia~l 301 (531)
T COG3898 276 DGNLRKGSKILETAWKAEPH-PDIALL 301 (531)
T ss_pred ccchhhhhhHHHHHHhcCCC-hHHHHH
Confidence 99999999999999999986 433333
No 340
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=91.75 E-value=2.5 Score=43.84 Aligned_cols=81 Identities=15% Similarity=0.064 Sum_probs=41.8
Q ss_pred cCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHc----c-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc-
Q 017264 16 DYFELAYDLYSQAIEI-----SPNSAELFADRAQASIKL----Q-NFTEAVADANRAIELEPSMSKAYWRKATACMKLE- 84 (374)
Q Consensus 16 ~~y~~Al~~y~~aL~~-----~p~~~~~~~~ra~~~~~l----~-~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~lg- 84 (374)
+|.+.|+.+|..+... .-.++.+.+.+|.||.+. . ++..|+..+.++..++ ++.+.+++|.++..-.
T Consensus 263 ~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g--~~~a~~~lg~~~~~g~~ 340 (552)
T KOG1550|consen 263 QDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELG--NPDAQYLLGVLYETGTK 340 (552)
T ss_pred ccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcC--CchHHHHHHHHHHcCCc
Confidence 4556666666655540 111333455566666553 2 4555666665555554 3345566666555433
Q ss_pred --CHHHHHHHHHHHHh
Q 017264 85 --EYETAKVALEKGAS 98 (374)
Q Consensus 85 --~~~eA~~~~~~a~~ 98 (374)
++..|..+|..|..
T Consensus 341 ~~d~~~A~~yy~~Aa~ 356 (552)
T KOG1550|consen 341 ERDYRRAFEYYSLAAK 356 (552)
T ss_pred cccHHHHHHHHHHHHH
Confidence 44566666655543
No 341
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=91.74 E-value=6.6 Score=36.73 Aligned_cols=100 Identities=13% Similarity=0.040 Sum_probs=70.0
Q ss_pred hHHHHHHHHHHHhcc-CHHHHHHHHHHHHHh----CCCC----------HHHHHHHHHHHHHccCHHH---HHHHHHHHH
Q 017264 2 ATDLEKKAKEAFIDD-YFELAYDLYSQAIEI----SPNS----------AELFADRAQASIKLQNFTE---AVADANRAI 63 (374)
Q Consensus 2 a~~l~~~g~~~~~~~-~y~~Al~~y~~aL~~----~p~~----------~~~~~~ra~~~~~l~~~~~---Al~~~~~al 63 (374)
++.+++.|..++..+ +|..|+..+++|+++ .... ...+..++.+|...+.++. |+...+.+-
T Consensus 35 a~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~ 114 (278)
T PF08631_consen 35 ARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYESVEKALNALRLLE 114 (278)
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHH
Confidence 567889999999999 999999999999988 2211 3566778888888877654 344444444
Q ss_pred HhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC
Q 017264 64 ELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAP 101 (374)
Q Consensus 64 ~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~a~~l~p 101 (374)
...|+.+..++-.=.++...++.+++...+.+.+..-.
T Consensus 115 ~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~ 152 (278)
T PF08631_consen 115 SEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVD 152 (278)
T ss_pred HhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcc
Confidence 44577666663333344447888888888888776543
No 342
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=91.73 E-value=3 Score=43.24 Aligned_cols=91 Identities=16% Similarity=0.046 Sum_probs=71.5
Q ss_pred HHHHHHHHhc----c-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc---CHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 017264 6 EKKAKEAFID----D-YFELAYDLYSQAIEISPNSAELFADRAQASIKLQ---NFTEAVADANRAIELEPSMSKAYWRKA 77 (374)
Q Consensus 6 ~~~g~~~~~~----~-~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~---~~~~Al~~~~~al~l~p~~~~a~~~lg 77 (374)
...|..+++. . |+..|+.+|.++-... ++.+.+.+|.||..-. ++..|..+|..|.... +..+++++|
T Consensus 292 ~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g--~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G--~~~A~~~la 367 (552)
T KOG1550|consen 292 YGLGRLYLQGLGVEKIDYEKALKLYTKAAELG--NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAG--HILAIYRLA 367 (552)
T ss_pred cHHHHHHhcCCCCccccHHHHHHHHHHHHhcC--CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcC--ChHHHHHHH
Confidence 3567777764 3 7899999999998864 4466677888887654 5788999998887665 778899999
Q ss_pred HHHHH----hcCHHHHHHHHHHHHhcC
Q 017264 78 TACMK----LEEYETAKVALEKGASLA 100 (374)
Q Consensus 78 ~~~~~----lg~~~eA~~~~~~a~~l~ 100 (374)
+||.. ..+...|..+|.++.+..
T Consensus 368 ~~y~~G~gv~r~~~~A~~~~k~aA~~g 394 (552)
T KOG1550|consen 368 LCYELGLGVERNLELAFAYYKKAAEKG 394 (552)
T ss_pred HHHHhCCCcCCCHHHHHHHHHHHHHcc
Confidence 99875 457889999999998877
No 343
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=91.73 E-value=0.97 Score=44.76 Aligned_cols=77 Identities=16% Similarity=0.139 Sum_probs=59.0
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 017264 4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK 82 (374)
Q Consensus 4 ~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~ 82 (374)
.....|..+|..|+|..+.-+-.-..+..| ++.+|.-+|.|++...+|.+|..++...= .+.+..++.-.+|.++++
T Consensus 464 n~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~LP-~n~~~~dskvqKAl~lCq 540 (549)
T PF07079_consen 464 NFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKLP-PNERMRDSKVQKALALCQ 540 (549)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhCC-CchhhHHHHHHHHHHHHH
Confidence 345678899999999999999988899999 79999999999999999999999774321 122334455555555443
No 344
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.43 E-value=0.8 Score=47.06 Aligned_cols=72 Identities=13% Similarity=0.132 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChhHHHH
Q 017264 38 LFADRAQASIKLQNFTEAVADANRAIELEP------SMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNL 109 (374)
Q Consensus 38 ~~~~ra~~~~~l~~~~~Al~~~~~al~l~p------~~~~a~~~lg~~~~~lg~~~eA~~~~~~a~~l~p~~~~~~~~ 109 (374)
++-+-|.-+++.++|..+++.|...++.-| .+.+.+..++.||..+.+.+.|+++++.|-+.+|.+.-.+..
T Consensus 356 iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~ 433 (872)
T KOG4814|consen 356 LLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLL 433 (872)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHH
Confidence 344567778899999999999999998655 357888899999999999999999999999999988754443
No 345
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=90.97 E-value=4.9 Score=41.66 Aligned_cols=118 Identities=20% Similarity=0.149 Sum_probs=90.2
Q ss_pred hHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCC------------------CHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 017264 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPN------------------SAELFADRAQASIKLQNFTEAVADANRAI 63 (374)
Q Consensus 2 a~~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~------------------~~~~~~~ra~~~~~l~~~~~Al~~~~~al 63 (374)
+..+.+-|..-+...+++.|+.+..+|+..-.. +..++...+.....+|-++.....|++.|
T Consensus 425 a~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdrii 504 (835)
T KOG2047|consen 425 AEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRII 504 (835)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 445667778888899999999999988876211 13455555666666788888899999999
Q ss_pred HhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHh
Q 017264 64 ELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAE 119 (374)
Q Consensus 64 ~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~a~~l~p~~~~~~~~~~~~~~~l~~ 119 (374)
.|---.+....++|..+.....+++|...|++++.+.+=-...-.|..-+.+-+.+
T Consensus 505 dLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~r 560 (835)
T KOG2047|consen 505 DLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKR 560 (835)
T ss_pred HHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHH
Confidence 99888888999999999999999999999999999987555555555555444443
No 346
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=90.91 E-value=4.3 Score=38.90 Aligned_cols=83 Identities=13% Similarity=0.116 Sum_probs=65.3
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHccC------------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHH
Q 017264 23 DLYSQAIEISPNSAELFADRAQASIKLQN------------FTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAK 90 (374)
Q Consensus 23 ~~y~~aL~~~p~~~~~~~~ra~~~~~l~~------------~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~ 90 (374)
..|++.++.+|++..+++.+......+-. .+..+..+++||+.+|++...++.+=.++....+-+...
T Consensus 6 ~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~ 85 (321)
T PF08424_consen 6 AELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLA 85 (321)
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHH
Confidence 45788888999999988888766554422 456678889999999988888777777777788888888
Q ss_pred HHHHHHHhcCCCChh
Q 017264 91 VALEKGASLAPGDSR 105 (374)
Q Consensus 91 ~~~~~a~~l~p~~~~ 105 (374)
.-+++++..+|++..
T Consensus 86 ~~we~~l~~~~~~~~ 100 (321)
T PF08424_consen 86 KKWEELLFKNPGSPE 100 (321)
T ss_pred HHHHHHHHHCCCChH
Confidence 889999988887664
No 347
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=90.83 E-value=1.1 Score=41.52 Aligned_cols=62 Identities=16% Similarity=0.022 Sum_probs=37.9
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Q 017264 55 AVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEER 116 (374)
Q Consensus 55 Al~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~a~~l~p~~~~~~~~~~~~~~~ 116 (374)
|+.+|.+|+.+.|.++..|..+|+++...|+.-.|+.+|-+++-..--.+.....+..+-.+
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 56677777777777777777777777777777777777777664433334455555554444
No 348
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=90.60 E-value=5.3 Score=35.31 Aligned_cols=59 Identities=19% Similarity=0.164 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 017264 38 LFADRAQASIKLQNFTEAVADANRAIELEPS---MSKAYWRKATACMKLEEYETAKVALEKG 96 (374)
Q Consensus 38 ~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~---~~~a~~~lg~~~~~lg~~~eA~~~~~~a 96 (374)
..+.+|..+...+++++|+..++.++..-.+ -.-+-+|+|.+++.+|.+++|+..+...
T Consensus 91 aaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~ 152 (207)
T COG2976 91 AALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTI 152 (207)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcc
Confidence 4455778888899999999999998855432 2346789999999999999999998764
No 349
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=90.33 E-value=0.48 Score=30.20 Aligned_cols=29 Identities=21% Similarity=0.232 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Q 017264 71 KAYWRKATACMKLEEYETAKVALEKGASL 99 (374)
Q Consensus 71 ~a~~~lg~~~~~lg~~~eA~~~~~~a~~l 99 (374)
++|.++|.+....++|.+|+..|++++.+
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i 30 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEI 30 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 46777788888888888888888777654
No 350
>PF05455 GvpH: GvpH; InterPro: IPR008633 This family consists of archaeal GvpH proteins which are thought to be involved in gas vesicle synthesis [].
Probab=90.28 E-value=1.8 Score=37.49 Aligned_cols=74 Identities=19% Similarity=0.231 Sum_probs=55.4
Q ss_pred cccccCC-eEEEEEEeCCCCCCc-eEEEEeeeEEEEEEEcCCCCeeeeccccccccccCceEEEEcCcEEEEEEeecCC
Q 017264 177 EFYQKPE-EVVVTVFAKGIPAKN-VTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVLSTKVEIRLAKAEP 253 (374)
Q Consensus 177 ~W~Qt~~-~V~i~i~~k~~~~~~-v~v~~~~~~l~v~~~~~~~~~y~~~~~L~~~I~p~~s~~~v~~~kiei~L~K~~~ 253 (374)
+=.+.++ .++|.--++||..++ +.|++..+...|.+...+ .|.-.|.|-.++ ++.-...+...-+||.|++.+.
T Consensus 95 dtre~dDge~~VvAdLPGVs~dd~idV~l~~d~~~L~i~~~~--~~~krv~L~~~~-~e~~~~t~nNgILEIri~~~~~ 170 (177)
T PF05455_consen 95 DTRERDDGELVVVADLPGVSDDDAIDVTLDDDEGALTIRVGE--KYLKRVALPWPD-PEITSATFNNGILEIRIRRTEE 170 (177)
T ss_pred eeEecCCCcEEEEEeCCCCCcccceeeEeecCCceEEEecCC--ceEeeEecCCCc-cceeeEEEeCceEEEEEeecCC
Confidence 3444555 688888899998877 888888776666665333 365678888885 6766788899999999999764
No 351
>cd06480 ACD_HspB8_like Alpha-crystallin domain (ACD) found in mammalian 21.6 KDa small heat shock protein (sHsp) HspB8, also denoted as Hsp22 in humans, and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. A chaperone complex formed of HspB8 and Bag3 stimulates degradation of protein complexes by macroautophagy. HspB8 also forms complexes with Hsp27 (HspB1), MKBP (HspB2), HspB3, alphaB-crystallin (HspB5), Hsp20 (HspB6), and cvHsp (HspB7). These latter interactions may depend on phosphorylation of the respective partner sHsp. HspB8 may participate in the regulation of cell proliferation, cardiac hypertrophy, apoptosis, and carcinogenesis. Point mutations in HspB8 have been correlated with the development of several congenital neurological diseases, including Charcot Marie tooth disease and distal motor neuropathy type II.
Probab=90.18 E-value=2 Score=33.20 Aligned_cols=68 Identities=15% Similarity=0.095 Sum_probs=51.3
Q ss_pred ccCCeEEEEEEeCCCCCCceEEEEeeeEEEEEEEcCC-----C---CeeeeccccccccccCceEEEEc-CcEEEEE
Q 017264 180 QKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPG-----E---EAYHFQPRLFGKIIPAKCRYEVL-STKVEIR 247 (374)
Q Consensus 180 Qt~~~V~i~i~~k~~~~~~v~v~~~~~~l~v~~~~~~-----~---~~y~~~~~L~~~I~p~~s~~~v~-~~kiei~ 247 (374)
-++++-.|.|-+.|..++++.|++..+.|.|+..... | ..|.-.+.|...|+++..+-.+. ...+.|.
T Consensus 12 ~~~~~f~v~ldv~gF~pEDL~Vkv~~~~L~V~Gkh~~~~~e~g~~~r~F~R~~~LP~~Vd~~~v~s~l~~dGvL~Ie 88 (91)
T cd06480 12 NSSEPWKVCVNVHSFKPEELTVKTKDGFVEVSGKHEEQQKEGGIVSKNFTKKIQLPPEVDPVTVFASLSPEGLLIIE 88 (91)
T ss_pred CCCCcEEEEEEeCCCCHHHcEEEEECCEEEEEEEECcccCCCCEEEEEEEEEEECCCCCCchhEEEEeCCCCeEEEE
Confidence 3456678899999999999999999999999874321 1 12445667999999998888877 4456554
No 352
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=90.17 E-value=2.7 Score=42.07 Aligned_cols=96 Identities=14% Similarity=0.050 Sum_probs=74.2
Q ss_pred HHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHH
Q 017264 9 AKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYET 88 (374)
Q Consensus 9 g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~e 88 (374)
-......||.-.|-.....+|+..|..+.....++..+..+|.|+.|++++.-+-..-..-..+..-+-..++.+|++++
T Consensus 296 i~k~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~ 375 (831)
T PRK15180 296 ITKQLADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWRE 375 (831)
T ss_pred HHHHhhccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHH
Confidence 34567789999999999999999999999889999999999999999998876655443333444445567889999999
Q ss_pred HHHHHHHHHhcCCCCh
Q 017264 89 AKVALEKGASLAPGDS 104 (374)
Q Consensus 89 A~~~~~~a~~l~p~~~ 104 (374)
|.......+.-.-.++
T Consensus 376 a~s~a~~~l~~eie~~ 391 (831)
T PRK15180 376 ALSTAEMMLSNEIEDE 391 (831)
T ss_pred HHHHHHHHhccccCCh
Confidence 9887776654443333
No 353
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=90.04 E-value=0.96 Score=28.40 Aligned_cols=21 Identities=14% Similarity=0.069 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHhcCHHHHHHH
Q 017264 72 AYWRKATACMKLEEYETAKVA 92 (374)
Q Consensus 72 a~~~lg~~~~~lg~~~eA~~~ 92 (374)
.++.+|..++..|+|++|+..
T Consensus 3 ~~y~~a~~~y~~~ky~~A~~~ 23 (36)
T PF07720_consen 3 YLYGLAYNFYQKGKYDEAIHF 23 (36)
T ss_dssp HHHHHHHHHHHTT-HHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHH
Confidence 445555555555555555555
No 354
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=89.56 E-value=3.9 Score=39.91 Aligned_cols=99 Identities=13% Similarity=0.099 Sum_probs=75.7
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHHhCCC-CHH-HHHHHHHHHHHccCHHHHHHHHHHHHHhCC-----CCHHHHHHH
Q 017264 4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPN-SAE-LFADRAQASIKLQNFTEAVADANRAIELEP-----SMSKAYWRK 76 (374)
Q Consensus 4 ~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~-~~~-~~~~ra~~~~~l~~~~~Al~~~~~al~l~p-----~~~~a~~~l 76 (374)
.++.....+.++|-|..|++...-.+.++|. ++. +++.+-...++.++|+--+..++....... ..+...|.+
T Consensus 105 al~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~a~S~ 184 (360)
T PF04910_consen 105 ALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNFAFSI 184 (360)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccHHHHH
Confidence 4567778889999999999999999999999 653 333344444566888777776666554211 245677899
Q ss_pred HHHHHHhcCH---------------HHHHHHHHHHHhcCCC
Q 017264 77 ATACMKLEEY---------------ETAKVALEKGASLAPG 102 (374)
Q Consensus 77 g~~~~~lg~~---------------~eA~~~~~~a~~l~p~ 102 (374)
+.+++.+++- +.|...+.+|+...|.
T Consensus 185 aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~ 225 (360)
T PF04910_consen 185 ALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFPW 225 (360)
T ss_pred HHHHHHhcCccccccccccccccchhHHHHHHHHHHHHhHH
Confidence 9999999998 8999999999988873
No 355
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=89.55 E-value=0.62 Score=29.69 Aligned_cols=30 Identities=23% Similarity=0.520 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Q 017264 37 ELFADRAQASIKLQNFTEAVADANRAIELE 66 (374)
Q Consensus 37 ~~~~~ra~~~~~l~~~~~Al~~~~~al~l~ 66 (374)
..|..+|.+-+..++|..|+.+|.+++.+.
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~ 31 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEIQ 31 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 356677777777788888888888887653
No 356
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=89.41 E-value=0.26 Score=47.10 Aligned_cols=78 Identities=18% Similarity=0.036 Sum_probs=65.9
Q ss_pred HHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc
Q 017264 7 KKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLE 84 (374)
Q Consensus 7 ~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~lg 84 (374)
+.+...++.++|..|+.....+++.++....+++.|+..|..+.++++|++++..+....|++....-.+...-....
T Consensus 280 n~~~~~lk~~~~~~a~~~~~~~~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~~~~~~ 357 (372)
T KOG0546|consen 280 NLAAVGLKVKGRGGARFRTNEALRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELENVRQKKK 357 (372)
T ss_pred chHHhcccccCCCcceeccccccccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHHHhhhHHH
Confidence 456777888999999999999999999999999999999999999999999999999999998776555544433333
No 357
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=89.35 E-value=2 Score=38.74 Aligned_cols=68 Identities=19% Similarity=0.131 Sum_probs=49.4
Q ss_pred HhccCHHHHHHHHHHHHHhCCC--C----HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHH
Q 017264 13 FIDDYFELAYDLYSQAIEISPN--S----AELFADRAQASIKLQNFTEAVADANRAIELEPSMS-KAYWRKATAC 80 (374)
Q Consensus 13 ~~~~~y~~Al~~y~~aL~~~p~--~----~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~-~a~~~lg~~~ 80 (374)
....=+..|++.|.+++..... . ..+++.+|..+.++|++++|++.|.+++....... ..+..+|.-+
T Consensus 136 ~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~s~~~~l~~~AR~~ 210 (214)
T PF09986_consen 136 NEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKASKEPKLKDMARDQ 210 (214)
T ss_pred HHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCCCCcHHHHHHHHHH
Confidence 3333467899999999887433 1 46777899999999999999999999997654332 3455555433
No 358
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=89.09 E-value=4.9 Score=37.04 Aligned_cols=62 Identities=18% Similarity=0.118 Sum_probs=50.2
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 017264 21 AYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK 82 (374)
Q Consensus 21 Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~ 82 (374)
|+.+|.+|+.+.|.+...|..+|..+...|+.-.|+-+|-+++....-++.+.-++...+..
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 78899999999999999999999999999999999999999996654456677777666666
No 359
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=88.94 E-value=2.6 Score=39.55 Aligned_cols=62 Identities=13% Similarity=0.100 Sum_probs=56.6
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q 017264 4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIEL 65 (374)
Q Consensus 4 ~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l 65 (374)
.+...+..+...++++.++.++++.+..+|.+-.+|..+-.+|++.|+...|+..|+++-.+
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~ 216 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT 216 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence 45667888999999999999999999999999999999999999999999999999877664
No 360
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=88.89 E-value=0.57 Score=26.87 Aligned_cols=23 Identities=22% Similarity=0.108 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHH
Q 017264 72 AYWRKATACMKLEEYETAKVALE 94 (374)
Q Consensus 72 a~~~lg~~~~~lg~~~eA~~~~~ 94 (374)
+++.+|.++..+|++++|...++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 45556666666666666665543
No 361
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=88.63 E-value=1.6 Score=27.37 Aligned_cols=29 Identities=14% Similarity=0.012 Sum_probs=13.9
Q ss_pred HHHHHHHHHHccCHHHHHHH--HHHHHHhCC
Q 017264 39 FADRAQASIKLQNFTEAVAD--ANRAIELEP 67 (374)
Q Consensus 39 ~~~ra~~~~~l~~~~~Al~~--~~~al~l~p 67 (374)
++.+|..+...|++++|+.. |..+..+++
T Consensus 4 ~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~ 34 (36)
T PF07720_consen 4 LYGLAYNFYQKGKYDEAIHFFQYAFLCALDK 34 (36)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHhcc
Confidence 44455555555555555555 324444443
No 362
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=88.28 E-value=9.4 Score=34.76 Aligned_cols=108 Identities=17% Similarity=0.076 Sum_probs=64.8
Q ss_pred HHhccCHHHHHHHHHHHHHhCCCCH------------HHHHHHHHHHHHccC-HHHH-HHHHHHHHHhC--CCCH--HHH
Q 017264 12 AFIDDYFELAYDLYSQAIEISPNSA------------ELFADRAQASIKLQN-FTEA-VADANRAIELE--PSMS--KAY 73 (374)
Q Consensus 12 ~~~~~~y~~Al~~y~~aL~~~p~~~------------~~~~~ra~~~~~l~~-~~~A-l~~~~~al~l~--p~~~--~a~ 73 (374)
+|..|+|+.|++....||+.+-.-| +-...-|......|+ ++-. +..+.....-. |+.. +.|
T Consensus 93 ~~D~Gd~~~AL~ia~yAI~~~l~~Pd~f~R~~~t~vaeev~~~A~~~~~ag~~~e~~~~~~~~~l~~~~dmpd~vrAKl~ 172 (230)
T PHA02537 93 RFDIGDFDGALEIAEYALEHGLTMPDQFRRTLANFVAEEVANAALKAASAGESVEPYFLRVFLDLTTEWDMPDEVRAKLY 172 (230)
T ss_pred eeeccCHHHHHHHHHHHHHcCCCCCccccCCchHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHhcCCCChHHHHHHH
Confidence 4678999999999999999832221 222223333334443 1111 11222222111 3333 334
Q ss_pred HHHHHHHH---------HhcCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhh
Q 017264 74 WRKATACM---------KLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE 120 (374)
Q Consensus 74 ~~lg~~~~---------~lg~~~eA~~~~~~a~~l~p~~~~~~~~~~~~~~~l~~~ 120 (374)
-..|..+. ..++...|+.+|++++.++|. .-+...+.++.++|+..
T Consensus 173 K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k-~GVK~~i~~l~~~lr~~ 227 (230)
T PHA02537 173 KAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDK-CGVKKDIERLERRLKAL 227 (230)
T ss_pred HHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCC-CChHHHHHHHHHHHhhc
Confidence 44566553 456788999999999999975 45778888888888754
No 363
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=88.07 E-value=12 Score=34.95 Aligned_cols=81 Identities=17% Similarity=0.082 Sum_probs=65.7
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc---------
Q 017264 18 FELAYDLYSQAIEISPNSAELFADRAQASIK----LQNFTEAVADANRAIELEPSMSKAYWRKATACMKLE--------- 84 (374)
Q Consensus 18 y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~----l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~lg--------- 84 (374)
...|+..|.++.... +..+.+.+|.+|.. ..++.+|..+|.+|..... ..+++.++ +++..|
T Consensus 171 ~~~A~~~~~~aa~~~--~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g~g~~~~~~~ 245 (292)
T COG0790 171 DKKALYLYRKAAELG--NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNGEGVKKAAFL 245 (292)
T ss_pred HHhHHHHHHHHHHhc--CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcCCCchhhhhc
Confidence 348999999988876 67888999988866 3589999999999999987 88999999 777666
Q ss_pred ------CHHHHHHHHHHHHhcCCCC
Q 017264 85 ------EYETAKVALEKGASLAPGD 103 (374)
Q Consensus 85 ------~~~eA~~~~~~a~~l~p~~ 103 (374)
+...|...+..+..+....
T Consensus 246 ~~~~~~~~~~a~~~~~~~~~~~~~~ 270 (292)
T COG0790 246 TAAKEEDKKQALEWLQKACELGFDN 270 (292)
T ss_pred ccccCCCHHHHHHHHHHHHHcCChh
Confidence 7777888888777665543
No 364
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=87.96 E-value=6.5 Score=33.22 Aligned_cols=83 Identities=13% Similarity=0.053 Sum_probs=67.0
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Q 017264 38 LFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERI 117 (374)
Q Consensus 38 ~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~a~~l~p~~~~~~~~~~~~~~~l 117 (374)
.+.....+-....+++++...+...--+.|+.++..+.-|.++...|+|.+|+..|....+-.+..+-.+..++.|...+
T Consensus 12 gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al 91 (153)
T TIGR02561 12 GLIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAK 91 (153)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhc
Confidence 34445555566888898888888877899999999999999999999999999999998877777676777777776655
Q ss_pred Hhh
Q 017264 118 AEE 120 (374)
Q Consensus 118 ~~~ 120 (374)
+..
T Consensus 92 ~Dp 94 (153)
T TIGR02561 92 GDA 94 (153)
T ss_pred CCh
Confidence 443
No 365
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=87.92 E-value=3 Score=37.60 Aligned_cols=59 Identities=22% Similarity=0.164 Sum_probs=28.0
Q ss_pred HHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Q 017264 10 KEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPS 68 (374)
Q Consensus 10 ~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~ 68 (374)
..+.+.+..++||.....-++..|.+......+-..|.-.|+|++|+..++.+-++.|+
T Consensus 9 seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~ 67 (273)
T COG4455 9 SELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQ 67 (273)
T ss_pred HHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcc
Confidence 34444444555555544444444444444444444444445555555544444444443
No 366
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=87.58 E-value=4.4 Score=38.07 Aligned_cols=61 Identities=23% Similarity=0.201 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 017264 36 AELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKG 96 (374)
Q Consensus 36 ~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~a 96 (374)
.+.-+.-+......+++.+|...+..++...|.+.++.+.++.||...|+.+.|...|...
T Consensus 134 ~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~l 194 (304)
T COG3118 134 EEEALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAAL 194 (304)
T ss_pred HHHHHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhC
Confidence 3445556777788999999999999999999999999999999999999999998887753
No 367
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=87.48 E-value=8.8 Score=37.76 Aligned_cols=62 Identities=15% Similarity=0.154 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHH--ccCHHHHHHHHHHHHH
Q 017264 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSA--ELFADRAQASIK--LQNFTEAVADANRAIE 64 (374)
Q Consensus 3 ~~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~--~~~~~ra~~~~~--l~~~~~Al~~~~~al~ 64 (374)
+....++..+|..++|..|...+..++..-|.+. ..+..++.+|.. .-+|.+|...++..+.
T Consensus 132 ~~~~~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~ 197 (379)
T PF09670_consen 132 DREWRRAKELFNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLK 197 (379)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 4557889999999999999999999988633333 456666666654 5678888888876664
No 368
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=87.34 E-value=4.9 Score=39.93 Aligned_cols=101 Identities=19% Similarity=0.211 Sum_probs=58.5
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHHhCCCC--------HHH--HHHHHHHH--------HHcc----CHHHHHHHHHH
Q 017264 4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNS--------AEL--FADRAQAS--------IKLQ----NFTEAVADANR 61 (374)
Q Consensus 4 ~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~--------~~~--~~~ra~~~--------~~l~----~~~~Al~~~~~ 61 (374)
...+.|..++..|.|.+|+..|..+|..-|-. .++ ++.++.-| .+.. ..++..+.++.
T Consensus 206 ~~Lk~gyk~~t~gKF~eA~~~Fr~iL~~i~l~vv~~~~E~~e~~eli~icrEYilgl~iEl~Rr~l~~~~~~~~kR~lEL 285 (422)
T PF06957_consen 206 ERLKEGYKLFTAGKFEEAIEIFRSILHSIPLLVVESREEEDEAKELIEICREYILGLSIELERRELPKDPVEDQKRNLEL 285 (422)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHC--BSSCHHHHHHHHHHHHHHHHHHHHHHHHHHCTS-TTTHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHhheeeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhHHHHHHH
Confidence 34668999999999999999999999873322 111 11122111 1111 12233333343
Q ss_pred HHH-----hCCCCHHHHHHHHHH-HHHhcCHHHHHHHHHHHHhcCCCCh
Q 017264 62 AIE-----LEPSMSKAYWRKATA-CMKLEEYETAKVALEKGASLAPGDS 104 (374)
Q Consensus 62 al~-----l~p~~~~a~~~lg~~-~~~lg~~~eA~~~~~~a~~l~p~~~ 104 (374)
|.- |.|.+.-.-+|.|.. .|+.++|..|....++.+++.|...
T Consensus 286 AAYFThc~LQp~H~~LaLr~AM~~~~K~KNf~tAa~FArRLLel~p~~~ 334 (422)
T PF06957_consen 286 AAYFTHCKLQPSHLILALRSAMSQAFKLKNFITAASFARRLLELNPSPE 334 (422)
T ss_dssp HHHHCCS---HHHHHHHHHHHHHHCCCTTBHHHHHHHHHHHHCT--SCH
T ss_pred HHHHhcCCCcHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCHH
Confidence 332 223333334455553 4789999999999999999999765
No 369
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=86.92 E-value=3.8 Score=40.49 Aligned_cols=97 Identities=12% Similarity=0.122 Sum_probs=62.1
Q ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHhC---------CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHH
Q 017264 5 LEKKAKEAFIDDYFELAYDLYSQAIEIS---------PNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWR 75 (374)
Q Consensus 5 l~~~g~~~~~~~~y~~Al~~y~~aL~~~---------p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~ 75 (374)
+......+.-.|||..|++.+.- |.++ +.+...++..|.||+.+++|.+|++.|...+..-......+..
T Consensus 125 ligLlRvh~LLGDY~~Alk~l~~-idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~yi~r~k~~~~~ 203 (404)
T PF10255_consen 125 LIGLLRVHCLLGDYYQALKVLEN-IDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILLYIQRTKNQYHQ 203 (404)
T ss_pred HHHHHHHHHhccCHHHHHHHhhc-cCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcc
Confidence 45567788899999999998754 2222 2235678889999999999999999998888432211111111
Q ss_pred HHHHH-HHhcCHHHHHHHHHHHHhcCCC
Q 017264 76 KATAC-MKLEEYETAKVALEKGASLAPG 102 (374)
Q Consensus 76 lg~~~-~~lg~~~eA~~~~~~a~~l~p~ 102 (374)
...-+ .-.+..++....+.-++.+.|.
T Consensus 204 ~~~q~d~i~K~~eqMyaLlAic~~l~p~ 231 (404)
T PF10255_consen 204 RSYQYDQINKKNEQMYALLAICLSLCPQ 231 (404)
T ss_pred ccchhhHHHhHHHHHHHHHHHHHHhCCC
Confidence 11111 1234445556666667777774
No 370
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=86.80 E-value=3 Score=30.93 Aligned_cols=30 Identities=30% Similarity=0.220 Sum_probs=19.8
Q ss_pred hHHHHHHHHHHHhccCHHHHHHHHHHHHHh
Q 017264 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEI 31 (374)
Q Consensus 2 a~~l~~~g~~~~~~~~y~~Al~~y~~aL~~ 31 (374)
|..+..+|..+-+.|+|.+||.+|+++++.
T Consensus 6 A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe~ 35 (75)
T cd02682 6 ARKYAINAVKAEKEGNAEDAITNYKKAIEV 35 (75)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 455666777777777777777666665554
No 371
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=86.72 E-value=5.6 Score=43.65 Aligned_cols=89 Identities=15% Similarity=0.112 Sum_probs=65.3
Q ss_pred cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcC-----HHHHH
Q 017264 16 DYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEE-----YETAK 90 (374)
Q Consensus 16 ~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~lg~-----~~eA~ 90 (374)
..|.+|+.-|++ |.-.|..+.-|...|.+|.++|+|.+-+..+..|++.-|+++..-+..-.+.+++.+ ...|.
T Consensus 533 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 611 (932)
T PRK13184 533 RDFTQALSEFSY-LHGGVGAPLEYLGKALVYQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHLVYRLHESLYKHRREAL 611 (932)
T ss_pred HHHHHHHHHHHH-hcCCCCCchHHHhHHHHHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457888888866 444677778889999999999999999999999999998876644433333333322 24566
Q ss_pred HHHHHHHhcCCCChh
Q 017264 91 VALEKGASLAPGDSR 105 (374)
Q Consensus 91 ~~~~~a~~l~p~~~~ 105 (374)
...--++...|....
T Consensus 612 ~~~~~~~~~~~~~~~ 626 (932)
T PRK13184 612 VFMLLALWIAPEKIS 626 (932)
T ss_pred HHHHHHHHhCccccc
Confidence 777778888887654
No 372
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=86.42 E-value=6 Score=35.18 Aligned_cols=71 Identities=23% Similarity=0.128 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHhcCHHHHH
Q 017264 19 ELAYDLYSQAIEI-SPNSAELFADRAQASIKLQNFTEAVADANRAIELEPS----MSKAYWRKATACMKLEEYETAK 90 (374)
Q Consensus 19 ~~Al~~y~~aL~~-~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~----~~~a~~~lg~~~~~lg~~~eA~ 90 (374)
+.|+..|-++-.. .=+++++.+.+|..|. ..+..+|++.+.+++++... +++.+..++.+++.+|+++.|-
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 4555555432222 1244777777776665 45678888888888877542 5777888888888888887764
No 373
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=86.19 E-value=2 Score=47.69 Aligned_cols=98 Identities=23% Similarity=0.209 Sum_probs=82.5
Q ss_pred hHHHHHHHHHHHhccCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------
Q 017264 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEI--------SPNSAELFADRAQASIKLQNFTEAVADANRAIEL-------- 65 (374)
Q Consensus 2 a~~l~~~g~~~~~~~~y~~Al~~y~~aL~~--------~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l-------- 65 (374)
++.+...+..+...+++++|+..-.+|+-. .|+....|.+++...+..++...|+..+.++..+
T Consensus 973 ~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~ 1052 (1236)
T KOG1839|consen 973 ASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGED 1052 (1236)
T ss_pred HHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCC
Confidence 567788999999999999999998887665 3455778999999889999999999999888876
Q ss_pred CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Q 017264 66 EPSMSKAYWRKATACMKLEEYETAKVALEKGASL 99 (374)
Q Consensus 66 ~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~a~~l 99 (374)
.|.-.....+++.++..+++++.|+.+++.|...
T Consensus 1053 hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~ 1086 (1236)
T KOG1839|consen 1053 HPPTALSFINLELLLLGVEEADTALRYLESALAK 1086 (1236)
T ss_pred CCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 3455556678999999999999999999999874
No 374
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=86.03 E-value=6.7 Score=39.50 Aligned_cols=65 Identities=14% Similarity=0.196 Sum_probs=53.5
Q ss_pred HHHHh-ccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccC-HHHHHHHHHHHHHhCCCCHHHHH
Q 017264 10 KEAFI-DDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQN-FTEAVADANRAIELEPSMSKAYW 74 (374)
Q Consensus 10 ~~~~~-~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~-~~~Al~~~~~al~l~p~~~~a~~ 74 (374)
..+.+ .+.|-+--..|.++|..+|+++.+|..-|.=.+..+. .+.|.+.+.++|+.+|+.+..|.
T Consensus 112 i~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR~npdsp~Lw~ 178 (568)
T KOG2396|consen 112 IAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLRFNPDSPKLWK 178 (568)
T ss_pred HHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhhcCCCChHHHH
Confidence 34444 4449999999999999999999999988876666654 99999999999999999876543
No 375
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=85.93 E-value=3.5 Score=43.08 Aligned_cols=82 Identities=15% Similarity=0.018 Sum_probs=58.3
Q ss_pred hHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 017264 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACM 81 (374)
Q Consensus 2 a~~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~ 81 (374)
.++..+.|..+.....|++|.++|.+. ....+.+.||+++..|++ ++.+.+.-|.+.+.+-.+|.++.
T Consensus 796 e~A~r~ig~~fa~~~~We~A~~yY~~~--------~~~e~~~ecly~le~f~~----LE~la~~Lpe~s~llp~~a~mf~ 863 (1189)
T KOG2041|consen 796 EDAFRNIGETFAEMMEWEEAAKYYSYC--------GDTENQIECLYRLELFGE----LEVLARTLPEDSELLPVMADMFT 863 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc--------cchHhHHHHHHHHHhhhh----HHHHHHhcCcccchHHHHHHHHH
Confidence 345677788888888888888888662 123456677777777765 34444555777777778888888
Q ss_pred HhcCHHHHHHHHHH
Q 017264 82 KLEEYETAKVALEK 95 (374)
Q Consensus 82 ~lg~~~eA~~~~~~ 95 (374)
..|.-++|+.+|-+
T Consensus 864 svGMC~qAV~a~Lr 877 (1189)
T KOG2041|consen 864 SVGMCDQAVEAYLR 877 (1189)
T ss_pred hhchHHHHHHHHHh
Confidence 88888888887765
No 376
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=85.87 E-value=13 Score=35.65 Aligned_cols=81 Identities=11% Similarity=0.079 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH---HHHhcCHHHHHHHHH
Q 017264 18 FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATA---CMKLEEYETAKVALE 94 (374)
Q Consensus 18 y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~---~~~lg~~~eA~~~~~ 94 (374)
.+.-+.+|.+||+.+|++..++..+-.+..+...-+....-+++++..+|++...|..+-.. .+..-.+..-...|.
T Consensus 47 ~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~ 126 (321)
T PF08424_consen 47 AERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYE 126 (321)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHH
Confidence 46778899999999999999999888888888888888999999999999987776654322 222334556666666
Q ss_pred HHHh
Q 017264 95 KGAS 98 (374)
Q Consensus 95 ~a~~ 98 (374)
++++
T Consensus 127 ~~l~ 130 (321)
T PF08424_consen 127 KCLR 130 (321)
T ss_pred HHHH
Confidence 5553
No 377
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=85.76 E-value=6 Score=31.62 Aligned_cols=67 Identities=13% Similarity=0.066 Sum_probs=51.8
Q ss_pred HHHHHHHccCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHhcC-----------HHHHHHHHHHHHhcCCCChhHH
Q 017264 42 RAQASIKLQNFTEAVADANRAIELEPSMS---KAYWRKATACMKLEE-----------YETAKVALEKGASLAPGDSRFT 107 (374)
Q Consensus 42 ra~~~~~l~~~~~Al~~~~~al~l~p~~~---~a~~~lg~~~~~lg~-----------~~eA~~~~~~a~~l~p~~~~~~ 107 (374)
+|..+++.|++-+|++..+..+..+++.. -.+..-|.+++.+.. .-.|++||.++..+.|......
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L 81 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHSL 81 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHHH
Confidence 57778899999999999999999887665 445556777766543 3478999999999999875433
Q ss_pred H
Q 017264 108 N 108 (374)
Q Consensus 108 ~ 108 (374)
.
T Consensus 82 ~ 82 (111)
T PF04781_consen 82 F 82 (111)
T ss_pred H
Confidence 3
No 378
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=85.61 E-value=1 Score=25.75 Aligned_cols=24 Identities=17% Similarity=-0.090 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHH
Q 017264 37 ELFADRAQASIKLQNFTEAVADAN 60 (374)
Q Consensus 37 ~~~~~ra~~~~~l~~~~~Al~~~~ 60 (374)
.+++.+|.+|..+|++++|...++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 345667777777777777776554
No 379
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=85.45 E-value=19 Score=35.41 Aligned_cols=108 Identities=14% Similarity=0.102 Sum_probs=65.6
Q ss_pred HHHHHHhccCHH-HHHHHHHHHHHhCCCCHHHHHHHHHHHHHc------------cCHHHHHHHHHHHHHhCCCCHHHHH
Q 017264 8 KAKEAFIDDYFE-LAYDLYSQAIEISPNSAELFADRAQASIKL------------QNFTEAVADANRAIELEPSMSKAYW 74 (374)
Q Consensus 8 ~g~~~~~~~~y~-~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l------------~~~~~Al~~~~~al~l~p~~~~a~~ 74 (374)
+-...-..|.|+ +++++-.+.+..+|....++..|=.++... .-+++-+.....+++.+|+.-.+|+
T Consensus 34 ~i~~~r~~~~yd~e~l~lt~~ll~~npe~~t~wN~Rr~~~~~r~~~~~~~~~ek~~~ld~eL~~~~~~L~~npksY~aW~ 113 (421)
T KOG0529|consen 34 IIQKKREAKEYDEEHLELTSELLEKNPEFYTVWNYRRLIIEERLTRAQLEPLEKQALLDEELKYVESALKVNPKSYGAWH 113 (421)
T ss_pred HHHHHHhccccchHHHHHHHHHHhhCchhhhhhhhHHHHHHHhhhhhcCCHHHHHHhhHHHHHHHHHHHHhCchhHHHHH
Confidence 333444555554 366666667777777766666554444322 2344556666677777777777777
Q ss_pred HHHHHHHHhcC--HHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Q 017264 75 RKATACMKLEE--YETAKVALEKGASLAPGDSRFTNLIKECEE 115 (374)
Q Consensus 75 ~lg~~~~~lg~--~~eA~~~~~~a~~l~p~~~~~~~~~~~~~~ 115 (374)
.+.-++.+.+. +..-++.++++++++|.|........-+..
T Consensus 114 hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~ 156 (421)
T KOG0529|consen 114 HRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVE 156 (421)
T ss_pred HHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHH
Confidence 77777765554 466677777777777777655444444433
No 380
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=85.41 E-value=20 Score=33.48 Aligned_cols=96 Identities=20% Similarity=0.201 Sum_probs=67.8
Q ss_pred HHhccCHHHHHHHHHHHHHhC-CCC-------HHHHHHHHHHHHHcc-CHHHHHHHHHHHHHh----CC---C-------
Q 017264 12 AFIDDYFELAYDLYSQAIEIS-PNS-------AELFADRAQASIKLQ-NFTEAVADANRAIEL----EP---S------- 68 (374)
Q Consensus 12 ~~~~~~y~~Al~~y~~aL~~~-p~~-------~~~~~~ra~~~~~l~-~~~~Al~~~~~al~l----~p---~------- 68 (374)
+..+|+++.|..+|.++-... ..+ +..+++.|...+..+ +++.|...+++|+.+ .. .
T Consensus 3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el 82 (278)
T PF08631_consen 3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL 82 (278)
T ss_pred chhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence 467899999999999987654 222 456777788888889 999999999999987 32 1
Q ss_pred CHHHHHHHHHHHHHhcCHHHHHH---HHHHHHhcCCCChhHH
Q 017264 69 MSKAYWRKATACMKLEEYETAKV---ALEKGASLAPGDSRFT 107 (374)
Q Consensus 69 ~~~a~~~lg~~~~~lg~~~eA~~---~~~~a~~l~p~~~~~~ 107 (374)
...++..++.+|...+.++.... .+..+..-.|+.+.+.
T Consensus 83 r~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~ 124 (278)
T PF08631_consen 83 RLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVF 124 (278)
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHH
Confidence 13456678888888888764444 3334444456655544
No 381
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=85.24 E-value=1.9 Score=40.82 Aligned_cols=69 Identities=9% Similarity=0.174 Sum_probs=57.0
Q ss_pred HHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHH-HHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHH
Q 017264 7 KKAKEAFIDDYFELAYDLYSQAIEISPNSAELFAD-RAQASIKLQNFTEAVADANRAIELEPSMSKAYWR 75 (374)
Q Consensus 7 ~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~-ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~ 75 (374)
.-++...+.|.|.+--..|.++|..+|.++++|.. -+.-|...+++..+...+.++++++|..+..|+.
T Consensus 112 ~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~e 181 (435)
T COG5191 112 QYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWIE 181 (435)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHHH
Confidence 34555567778888889999999999999998887 3455667799999999999999999998876654
No 382
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=85.13 E-value=3.4 Score=40.81 Aligned_cols=98 Identities=21% Similarity=0.175 Sum_probs=61.6
Q ss_pred ChHHHHHHHHHHHhccCHHHHHHHHHHHHHh-----------CCCCHHHHHHHHHHHHHccCH----------HHHHHHH
Q 017264 1 MATDLEKKAKEAFIDDYFELAYDLYSQAIEI-----------SPNSAELFADRAQASIKLQNF----------TEAVADA 59 (374)
Q Consensus 1 ma~~l~~~g~~~~~~~~y~~Al~~y~~aL~~-----------~p~~~~~~~~ra~~~~~l~~~----------~~Al~~~ 59 (374)
|+--+...|.+++..+.|.+|+..+-.|=+. --+.+.+-...-.||+++++. ..|...|
T Consensus 162 mglg~hekaRa~m~re~y~eAl~~LleADe~F~~Cd~klLe~VDNyallnLDIVWCYfrLknitcL~DAe~RL~ra~kgf 241 (568)
T KOG2561|consen 162 MGLGLHEKARAAMEREMYSEALLVLLEADESFSLCDSKLLELVDNYALLNLDIVWCYFRLKNITCLPDAEVRLVRARKGF 241 (568)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcchhhhhcchhheehhhcccccCChHHHHHHHHHHhh
Confidence 4455778999999999999999877554333 222233334456788887543 2233333
Q ss_pred HHHH--------HhC-CCCH------HHHHHHHHHHHHhcCHHHHHHHHHHHHh
Q 017264 60 NRAI--------ELE-PSMS------KAYWRKATACMKLEEYETAKVALEKGAS 98 (374)
Q Consensus 60 ~~al--------~l~-p~~~------~a~~~lg~~~~~lg~~~eA~~~~~~a~~ 98 (374)
.++. .+. +..+ ..++.-|+..|+.|+-++|.++|+.+..
T Consensus 242 ~~syGenl~Rl~~lKg~~spEraL~lRL~LLQGV~~yHqg~~deAye~le~a~~ 295 (568)
T KOG2561|consen 242 ERSYGENLSRLRSLKGGQSPERALILRLELLQGVVAYHQGQRDEAYEALESAHA 295 (568)
T ss_pred hhhhhhhhHhhhhccCCCChhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 3222 111 2222 2333459999999999999999998643
No 383
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=85.00 E-value=22 Score=36.53 Aligned_cols=105 Identities=14% Similarity=0.029 Sum_probs=88.1
Q ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHh
Q 017264 5 LEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELE-PSMSKAYWRKATACMKL 83 (374)
Q Consensus 5 l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~-p~~~~a~~~lg~~~~~l 83 (374)
+..-.......|++.....+|.+++--...-.++|++.+.-....|+..-|-..+.++++.. +..+..++..+...-..
T Consensus 300 w~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~ 379 (577)
T KOG1258|consen 300 WRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFEESN 379 (577)
T ss_pred HHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHhh
Confidence 44455566789999999999999999888888999999998888899998888888888875 66778888899999999
Q ss_pred cCHHHHHHHHHHHHhcCCCChhHHHH
Q 017264 84 EEYETAKVALEKGASLAPGDSRFTNL 109 (374)
Q Consensus 84 g~~~eA~~~~~~a~~l~p~~~~~~~~ 109 (374)
|++..|...|+++.+-.|+.-.+-..
T Consensus 380 ~n~~~A~~~lq~i~~e~pg~v~~~l~ 405 (577)
T KOG1258|consen 380 GNFDDAKVILQRIESEYPGLVEVVLR 405 (577)
T ss_pred ccHHHHHHHHHHHHhhCCchhhhHHH
Confidence 99999999999998776776554333
No 384
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=84.93 E-value=6.8 Score=38.42 Aligned_cols=94 Identities=16% Similarity=0.131 Sum_probs=70.9
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC----C----CCHHH
Q 017264 4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNS---AELFADRAQASIKLQNFTEAVADANRAIELE----P----SMSKA 72 (374)
Q Consensus 4 ~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~---~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~----p----~~~~a 72 (374)
.+...|.-|+..|+++.|+..|.++-...... ...+.+.-.+-+-+++|..-+.+..+|...- . -.+..
T Consensus 152 a~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~kl 231 (466)
T KOG0686|consen 152 ALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAKL 231 (466)
T ss_pred HHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcch
Confidence 45678889999999999999999976664433 3455666666666899998888888877652 1 13456
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHH
Q 017264 73 YWRKATACMKLEEYETAKVALEKGA 97 (374)
Q Consensus 73 ~~~lg~~~~~lg~~~eA~~~~~~a~ 97 (374)
....|.+++.++.|..|..+|-.+.
T Consensus 232 ~C~agLa~L~lkkyk~aa~~fL~~~ 256 (466)
T KOG0686|consen 232 KCAAGLANLLLKKYKSAAKYFLLAE 256 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 6778999999999999999887654
No 385
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=84.56 E-value=8.7 Score=38.62 Aligned_cols=88 Identities=15% Similarity=0.072 Sum_probs=52.7
Q ss_pred HHHHHHhccCHHHHHHHHH--HHHHhCCCCHHHHHHHHHHHHHccCHHHHHHH-------HHHHHHhC-----------C
Q 017264 8 KAKEAFIDDYFELAYDLYS--QAIEISPNSAELFADRAQASIKLQNFTEAVAD-------ANRAIELE-----------P 67 (374)
Q Consensus 8 ~g~~~~~~~~y~~Al~~y~--~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~-------~~~al~l~-----------p 67 (374)
+-..+..+++|++++.+.. +.+..-| ...+...+..+.+.|.++.|++. |+.|++++ -
T Consensus 267 ~fk~av~~~d~~~v~~~i~~~~ll~~i~--~~~~~~i~~fL~~~G~~e~AL~~~~D~~~rFeLAl~lg~L~~A~~~a~~~ 344 (443)
T PF04053_consen 267 EFKTAVLRGDFEEVLRMIAASNLLPNIP--KDQGQSIARFLEKKGYPELALQFVTDPDHRFELALQLGNLDIALEIAKEL 344 (443)
T ss_dssp HHHHHHHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS-HHHHHHHHHHCT-HHHHHHHCCCC
T ss_pred HHHHHHHcCChhhhhhhhhhhhhcccCC--hhHHHHHHHHHHHCCCHHHHHhhcCChHHHhHHHHhcCCHHHHHHHHHhc
Confidence 3455667788888776664 2221222 23355556666666766666542 33344332 2
Q ss_pred CCHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 017264 68 SMSKAYWRKATACMKLEEYETAKVALEKGA 97 (374)
Q Consensus 68 ~~~~a~~~lg~~~~~lg~~~eA~~~~~~a~ 97 (374)
+....|-++|......|+++-|..||+++-
T Consensus 345 ~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~ 374 (443)
T PF04053_consen 345 DDPEKWKQLGDEALRQGNIELAEECYQKAK 374 (443)
T ss_dssp STHHHHHHHHHHHHHTTBHHHHHHHHHHCT
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHhhc
Confidence 467899999999999999999999999864
No 386
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=84.32 E-value=14 Score=38.07 Aligned_cols=98 Identities=16% Similarity=0.076 Sum_probs=77.3
Q ss_pred HhccCHHH-HHHHHHHHHHhCCCCHHHHHH--HHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHH
Q 017264 13 FIDDYFEL-AYDLYSQAIEISPNSAELFAD--RAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETA 89 (374)
Q Consensus 13 ~~~~~y~~-Al~~y~~aL~~~p~~~~~~~~--ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA 89 (374)
+..++.+. |+..|...+..++.++.++.. |+..+..++....+...+..++..+|.+..++.++|.++...|..-.+
T Consensus 41 l~~~~~~~~~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~ 120 (620)
T COG3914 41 LNAEGLQALAIYALLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLA 120 (620)
T ss_pred hcccCchhHHHHHHHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHH
Confidence 33344443 677777777788888876544 477777889998899999999999999999999999999888887777
Q ss_pred HHHHHH-HHhcCCCChhHHHHH
Q 017264 90 KVALEK-GASLAPGDSRFTNLI 110 (374)
Q Consensus 90 ~~~~~~-a~~l~p~~~~~~~~~ 110 (374)
...+.. +....|.+..+...+
T Consensus 121 ~~~~~~~a~~~~~~~~~~~~~~ 142 (620)
T COG3914 121 LADISEIAEWLSPDNAEFLGHL 142 (620)
T ss_pred HHHHHHHHHhcCcchHHHHhhH
Confidence 766655 888999988776666
No 387
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=84.16 E-value=19 Score=35.42 Aligned_cols=88 Identities=10% Similarity=0.073 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChh--HHHHHH
Q 017264 38 LFADRAQASIKLQNFTEAVADANRAIEL----EPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSR--FTNLIK 111 (374)
Q Consensus 38 ~~~~ra~~~~~l~~~~~Al~~~~~al~l----~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~a~~l~p~~~~--~~~~~~ 111 (374)
+.+.+-.+|+..+.|+.|-....++.-- +...+..+|.+|.+..-.++|..|..+|-+|++..|.+.. +.+...
T Consensus 211 LiN~LLr~yL~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq~~alGf~q~v~ 290 (493)
T KOG2581|consen 211 LINLLLRNYLHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQHAALGFRQQVN 290 (493)
T ss_pred HHHHHHHHHhhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcchhhhhHHHHHH
Confidence 3344455666667777776655554411 1235678888999999999999999999999999998543 333333
Q ss_pred HHHHHHHhhhcccC
Q 017264 112 ECEERIAEETGELQ 125 (374)
Q Consensus 112 ~~~~~l~~~~~~~~ 125 (374)
+|.--..-..++.|
T Consensus 291 k~~ivv~ll~geiP 304 (493)
T KOG2581|consen 291 KLMIVVELLLGEIP 304 (493)
T ss_pred HHHHHHHHHcCCCc
Confidence 33333344455554
No 388
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=83.96 E-value=2.2 Score=42.11 Aligned_cols=59 Identities=14% Similarity=0.167 Sum_probs=45.8
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhC---------CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Q 017264 39 FADRAQASIKLQNFTEAVADANRAIELE---------PSMSKAYWRKATACMKLEEYETAKVALEKGAS 98 (374)
Q Consensus 39 ~~~ra~~~~~l~~~~~Al~~~~~al~l~---------p~~~~a~~~lg~~~~~lg~~~eA~~~~~~a~~ 98 (374)
++.+..+|.-+|+|..|+..++.. .++ +.+...+|..|.+|..+++|.+|+..|..++-
T Consensus 125 ligLlRvh~LLGDY~~Alk~l~~i-dl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~ 192 (404)
T PF10255_consen 125 LIGLLRVHCLLGDYYQALKVLENI-DLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILL 192 (404)
T ss_pred HHHHHHHHHhccCHHHHHHHhhcc-CcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444566777899999999876532 222 34567889999999999999999999998764
No 389
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=83.47 E-value=38 Score=35.51 Aligned_cols=106 Identities=20% Similarity=0.119 Sum_probs=73.1
Q ss_pred HHHHHHHHHHH-hccCHHHHHHHHHHHHHhCCCC--H----HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC----CHH
Q 017264 3 TDLEKKAKEAF-IDDYFELAYDLYSQAIEISPNS--A----ELFADRAQASIKLQNFTEAVADANRAIELEPS----MSK 71 (374)
Q Consensus 3 ~~l~~~g~~~~-~~~~y~~Al~~y~~aL~~~p~~--~----~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~----~~~ 71 (374)
...+..|..++ .-.+++.|..++.+++.+...+ . .+.+-++.+|.+.+... |+..++++++.... ...
T Consensus 60 ~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~ 138 (608)
T PF10345_consen 60 RVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWY 138 (608)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHH
Confidence 34567788777 7789999999999998886432 2 23334577777777666 99999999987654 334
Q ss_pred HHHHHHHH-HH-HhcCHHHHHHHHHHHHhcC--CCChhHHHH
Q 017264 72 AYWRKATA-CM-KLEEYETAKVALEKGASLA--PGDSRFTNL 109 (374)
Q Consensus 72 a~~~lg~~-~~-~lg~~~eA~~~~~~a~~l~--p~~~~~~~~ 109 (374)
.+|++-.+ +. ..+++..|+..++.+..+. ..++.+...
T Consensus 139 ~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~ 180 (608)
T PF10345_consen 139 YAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVL 180 (608)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHH
Confidence 44454322 22 2379999999999988776 355544333
No 390
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=83.01 E-value=13 Score=32.29 Aligned_cols=65 Identities=18% Similarity=0.183 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Q 017264 36 AELFADRAQASIKLQNFTEAVADANRAIELEPS---MSKAYWRKATACMKLEEYETAKVALEKGASLA 100 (374)
Q Consensus 36 ~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~---~~~a~~~lg~~~~~lg~~~eA~~~~~~a~~l~ 100 (374)
..++..+|..|.+.|++++|+..|.++....-. ..+.++++-.+.+..+++.....++.++..+-
T Consensus 36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~ 103 (177)
T PF10602_consen 36 RMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLI 103 (177)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 467889999999999999999999998876543 35678888899999999999999999887654
No 391
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=82.76 E-value=28 Score=35.18 Aligned_cols=91 Identities=12% Similarity=0.102 Sum_probs=67.8
Q ss_pred HHHHHHHHhccCHHHHHHHHHHHHHhCCC-CHH--HHHHHHHHHHHccCHHHHHHHHHHHH-HhCCC----------CHH
Q 017264 6 EKKAKEAFIDDYFELAYDLYSQAIEISPN-SAE--LFADRAQASIKLQNFTEAVADANRAI-ELEPS----------MSK 71 (374)
Q Consensus 6 ~~~g~~~~~~~~y~~Al~~y~~aL~~~p~-~~~--~~~~ra~~~~~l~~~~~Al~~~~~al-~l~p~----------~~~ 71 (374)
.-.|.....-+.|+.|..+|..|+++-.. +.. +-.++|..|++.++-+. +-+++ .+.|. ...
T Consensus 371 ~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL~~~~~ed----~y~~ld~i~p~nt~s~ssq~l~a~ 446 (629)
T KOG2300|consen 371 MLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISYLRIGDAED----LYKALDLIGPLNTNSLSSQRLEAS 446 (629)
T ss_pred HHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHhccHHH----HHHHHHhcCCCCCCcchHHHHHHH
Confidence 44677777788899999999999998433 333 44567899999776443 33333 34443 255
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Q 017264 72 AYWRKATACMKLEEYETAKVALEKGASLA 100 (374)
Q Consensus 72 a~~~lg~~~~~lg~~~eA~~~~~~a~~l~ 100 (374)
++|..|...|..+++.+|...+.+.++..
T Consensus 447 ~~~v~glfaf~qn~lnEaK~~l~e~Lkma 475 (629)
T KOG2300|consen 447 ILYVYGLFAFKQNDLNEAKRFLRETLKMA 475 (629)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhc
Confidence 78889999999999999999999999877
No 392
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=82.64 E-value=29 Score=35.77 Aligned_cols=93 Identities=19% Similarity=0.096 Sum_probs=67.2
Q ss_pred ccCHHHHHHHHHHHHHh------------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHH-----hCCC---------
Q 017264 15 DDYFELAYDLYSQAIEI------------SPNSAELFADRAQASIKLQNFTEAVADANRAIE-----LEPS--------- 68 (374)
Q Consensus 15 ~~~y~~Al~~y~~aL~~------------~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~-----l~p~--------- 68 (374)
...|++|...|.-|... .|.+...++.+|.+...+|+.+-|.....++|- ++|.
T Consensus 251 s~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cR 330 (665)
T KOG2422|consen 251 SNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCR 330 (665)
T ss_pred chHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhcccccccccccc
Confidence 44577777777666654 455578888999999999988877766666652 2221
Q ss_pred -------C---HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCC-ChhHH
Q 017264 69 -------M---SKAYWRKATACMKLEEYETAKVALEKGASLAPG-DSRFT 107 (374)
Q Consensus 69 -------~---~~a~~~lg~~~~~lg~~~eA~~~~~~a~~l~p~-~~~~~ 107 (374)
+ -.++|+.-+.+.+.|.+..|.+++.-.+.++|. |+-+.
T Consensus 331 L~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~ 380 (665)
T KOG2422|consen 331 LPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGI 380 (665)
T ss_pred CcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhH
Confidence 1 235556666778899999999999999999998 66433
No 393
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=82.39 E-value=6.7 Score=41.89 Aligned_cols=78 Identities=21% Similarity=0.095 Sum_probs=48.3
Q ss_pred HHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHH
Q 017264 9 AKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYET 88 (374)
Q Consensus 9 g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~e 88 (374)
|..+...|-.++|+.+|.+.-+. -.+-..|...|++.+|++.++.-=+++ ....||++|..+...++.+.
T Consensus 807 AvLAieLgMlEeA~~lYr~ckR~--------DLlNKlyQs~g~w~eA~eiAE~~DRiH--Lr~Tyy~yA~~Lear~Di~~ 876 (1416)
T KOG3617|consen 807 AVLAIELGMLEEALILYRQCKRY--------DLLNKLYQSQGMWSEAFEIAETKDRIH--LRNTYYNYAKYLEARRDIEA 876 (1416)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHH--------HHHHHHHHhcccHHHHHHHHhhcccee--hhhhHHHHHHHHHhhccHHH
Confidence 34444555556666666553221 122234555566666666443322222 34579999999999999999
Q ss_pred HHHHHHHH
Q 017264 89 AKVALEKG 96 (374)
Q Consensus 89 A~~~~~~a 96 (374)
|+++|+++
T Consensus 877 AleyyEK~ 884 (1416)
T KOG3617|consen 877 ALEYYEKA 884 (1416)
T ss_pred HHHHHHhc
Confidence 99999985
No 394
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=82.30 E-value=4.1 Score=41.23 Aligned_cols=74 Identities=16% Similarity=0.097 Sum_probs=60.9
Q ss_pred HHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc---CHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhh
Q 017264 47 IKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLE---EYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE 120 (374)
Q Consensus 47 ~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~lg---~~~eA~~~~~~a~~l~p~~~~~~~~~~~~~~~l~~~ 120 (374)
+..+....|+.+|.++++..|.....+.+++.++...+ +.-.|+..+..+++++|.....+.++.++...|...
T Consensus 385 ly~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el~r~ 461 (758)
T KOG1310|consen 385 LYESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNELTRY 461 (758)
T ss_pred hhhHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHhhH
Confidence 33456788999999999999999999999999888754 455777888889999999888888888887777665
No 395
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=82.27 E-value=34 Score=29.97 Aligned_cols=27 Identities=22% Similarity=0.076 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHh
Q 017264 72 AYWRKATACMKLEEYETAKVALEKGAS 98 (374)
Q Consensus 72 a~~~lg~~~~~lg~~~eA~~~~~~a~~ 98 (374)
+.--||.+-++.|+|..|...|.+...
T Consensus 169 ArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 169 AREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 444588888999999999999998765
No 396
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=82.06 E-value=9.8 Score=36.49 Aligned_cols=92 Identities=16% Similarity=0.134 Sum_probs=66.6
Q ss_pred ccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcCHHHHHHH
Q 017264 15 DDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELE--PSMSKAYWRKATACMKLEEYETAKVA 92 (374)
Q Consensus 15 ~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~--p~~~~a~~~lg~~~~~lg~~~eA~~~ 92 (374)
.-||..-..+|+-.....|+ +..-.|||.+..+..=.+.++...+-+.... ..+..+|-.+|..+.++|+..+|...
T Consensus 309 dtDW~~I~aLYdaL~~~apS-PvV~LNRAVAla~~~Gp~agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~a 387 (415)
T COG4941 309 DTDWPAIDALYDALEQAAPS-PVVTLNRAVALAMREGPAAGLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAA 387 (415)
T ss_pred CCChHHHHHHHHHHHHhCCC-CeEeehHHHHHHHhhhHHhHHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHH
Confidence 34566666667665555555 5666788888877766777777766555431 23445667789999999999999999
Q ss_pred HHHHHhcCCCChhHH
Q 017264 93 LEKGASLAPGDSRFT 107 (374)
Q Consensus 93 ~~~a~~l~p~~~~~~ 107 (374)
|++++.+.++..+-.
T Consensus 388 ydrAi~La~~~aer~ 402 (415)
T COG4941 388 YDRAIALARNAAERA 402 (415)
T ss_pred HHHHHHhcCChHHHH
Confidence 999999998766533
No 397
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=81.66 E-value=4 Score=30.38 Aligned_cols=30 Identities=27% Similarity=0.350 Sum_probs=22.4
Q ss_pred hHHHHHHHHHHHhccCHHHHHHHHHHHHHh
Q 017264 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEI 31 (374)
Q Consensus 2 a~~l~~~g~~~~~~~~y~~Al~~y~~aL~~ 31 (374)
|..+..+|..+=..|+|++|+.+|.++|..
T Consensus 6 a~~l~~~Ave~D~~g~y~eAl~~Y~~aie~ 35 (77)
T cd02683 6 AKEVLKRAVELDQEGRFQEALVCYQEGIDL 35 (77)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 446677778888888888888887777664
No 398
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=81.65 E-value=5.9 Score=37.26 Aligned_cols=60 Identities=20% Similarity=0.167 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 017264 37 ELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKG 96 (374)
Q Consensus 37 ~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~a 96 (374)
.++...|..|...|.+.+|++.+++++.++|.+...+..+-.+|..+|+--.|...|++.
T Consensus 280 kllgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 280 KLLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 345556778888999999999999999999999999999999999999977777777654
No 399
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=81.25 E-value=2.8 Score=46.53 Aligned_cols=98 Identities=26% Similarity=0.363 Sum_probs=79.0
Q ss_pred hHHHHHHHHHHHhccCHHHHHH------HHHHHHH-hCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--------
Q 017264 2 ATDLEKKAKEAFIDDYFELAYD------LYSQAIE-ISPNSAELFADRAQASIKLQNFTEAVADANRAIELE-------- 66 (374)
Q Consensus 2 a~~l~~~g~~~~~~~~y~~Al~------~y~~aL~-~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~-------- 66 (374)
+...+..|......+.+.+|.+ +++.... +.|.....|..++..+.+++++++|+....+|+-+.
T Consensus 932 a~~~~e~gq~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds 1011 (1236)
T KOG1839|consen 932 AKDSPEQGQEALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDS 1011 (1236)
T ss_pred hhhhhhhhhhhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCC
Confidence 3456788888889999988887 5553333 377778899999999999999999999998888553
Q ss_pred CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Q 017264 67 PSMSKAYWRKATACMKLEEYETAKVALEKGASL 99 (374)
Q Consensus 67 p~~~~a~~~lg~~~~~lg~~~eA~~~~~~a~~l 99 (374)
|+....+.+++...+..+....|+..+.++..+
T Consensus 1012 ~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l 1044 (1236)
T KOG1839|consen 1012 PNTKLAYGNLALYEFAVKNLSGALKSLNRALKL 1044 (1236)
T ss_pred HHHHHHhhHHHHHHHhccCccchhhhHHHHHHh
Confidence 356778889999999999988898888877654
No 400
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=81.21 E-value=22 Score=35.02 Aligned_cols=102 Identities=10% Similarity=0.023 Sum_probs=77.7
Q ss_pred HHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc--CHHHHHHHHHHHHHhCCCCHHHHH-HHHHHHHHhcC---
Q 017264 12 AFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQ--NFTEAVADANRAIELEPSMSKAYW-RKATACMKLEE--- 85 (374)
Q Consensus 12 ~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~--~~~~Al~~~~~al~l~p~~~~a~~-~lg~~~~~lg~--- 85 (374)
+.+..-.++-+.+...+|+.+|....++..|..++.+.+ ++..-++.++++++.+|.+-.+|. |+-++-.....
T Consensus 85 ~ek~~~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~ 164 (421)
T KOG0529|consen 85 LEKQALLDEELKYVESALKVNPKSYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNL 164 (421)
T ss_pred HHHHHhhHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhccccc
Confidence 344446778889999999999999999999999998875 468899999999999998766554 44444444444
Q ss_pred HHHHHHHHHHHHhcCCCChhHHHHHHHH
Q 017264 86 YETAKVALEKGASLAPGDSRFTNLIKEC 113 (374)
Q Consensus 86 ~~eA~~~~~~a~~l~p~~~~~~~~~~~~ 113 (374)
..+-+++.++++.-++.|-.+......+
T Consensus 165 ~~~El~ftt~~I~~nfSNYsaWhyRs~l 192 (421)
T KOG0529|consen 165 EKEELEFTTKLINDNFSNYSAWHYRSLL 192 (421)
T ss_pred chhHHHHHHHHHhccchhhhHHHHHHHH
Confidence 5677788888888877776665555554
No 401
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=80.94 E-value=4.5 Score=40.52 Aligned_cols=95 Identities=17% Similarity=0.124 Sum_probs=73.2
Q ss_pred HHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHH
Q 017264 8 KAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYE 87 (374)
Q Consensus 8 ~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~ 87 (374)
.+..+-..|+|+.|+..+..+-..-.....+..-|-..+.+++++++|+..+.-.+...-..++....-|...-.+|-++
T Consensus 329 ~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d 408 (831)
T PRK15180 329 RSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALSTAEMMLSNEIEDEEVLTVAAGSADALQLFD 408 (831)
T ss_pred HHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHHHHHHHhccccCChhheeeecccHHHHhHHH
Confidence 45566778999999998877666544444444555566778999999999888888766667777777777778888899
Q ss_pred HHHHHHHHHHhcCCC
Q 017264 88 TAKVALEKGASLAPG 102 (374)
Q Consensus 88 eA~~~~~~a~~l~p~ 102 (374)
+|.-++.+.+.++|.
T Consensus 409 ~~~~~wk~~~~~~~~ 423 (831)
T PRK15180 409 KSYHYWKRVLLLNPE 423 (831)
T ss_pred HHHHHHHHHhccCCh
Confidence 999999999888765
No 402
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=80.83 E-value=8.9 Score=37.89 Aligned_cols=79 Identities=15% Similarity=0.088 Sum_probs=60.5
Q ss_pred HHHHHHccCHHHHHHHHHHHHHhCC--------C-----C-----HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCh
Q 017264 43 AQASIKLQNFTEAVADANRAIELEP--------S-----M-----SKAYWRKATACMKLEEYETAKVALEKGASLAPGDS 104 (374)
Q Consensus 43 a~~~~~l~~~~~Al~~~~~al~l~p--------~-----~-----~~a~~~lg~~~~~lg~~~eA~~~~~~a~~l~p~~~ 104 (374)
|..++++++|..|..-|..||++.. . + .-..-.+..||.++++.+.|+..-.+.+-++|...
T Consensus 183 as~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~lnP~~f 262 (569)
T PF15015_consen 183 ASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINLNPSYF 262 (569)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhcCcchh
Confidence 4455567777777777777776632 1 1 11234689999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHhhh
Q 017264 105 RFTNLIKECEERIAEET 121 (374)
Q Consensus 105 ~~~~~~~~~~~~l~~~~ 121 (374)
.-+.|.+.|...|.+..
T Consensus 263 rnHLrqAavfR~LeRy~ 279 (569)
T PF15015_consen 263 RNHLRQAAVFRRLERYS 279 (569)
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 88888888888888774
No 403
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=80.82 E-value=7.7 Score=35.65 Aligned_cols=62 Identities=15% Similarity=0.166 Sum_probs=48.8
Q ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 017264 35 SAELFADRAQASIKLQNFTEAVADANRAIELEP------SMSKAYWRKATACMKLEEYETAKVALEKG 96 (374)
Q Consensus 35 ~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p------~~~~a~~~lg~~~~~lg~~~eA~~~~~~a 96 (374)
...+...+|.-|+.+|+|++|+..++.++..-. -....+..+..|++.+|+.+..+.+.-+.
T Consensus 177 ~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 177 ASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 377788899999999999999999999875532 13456778888999999988887765444
No 404
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=80.48 E-value=11 Score=31.36 Aligned_cols=42 Identities=26% Similarity=0.212 Sum_probs=17.6
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q 017264 23 DLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIE 64 (374)
Q Consensus 23 ~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~ 64 (374)
+.+...++-...++.+++.+|.+|-++|+..+|-..+.+|++
T Consensus 107 ki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACe 148 (161)
T PF09205_consen 107 KIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACE 148 (161)
T ss_dssp HHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 334443333334455555555555555555555555555544
No 405
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=80.46 E-value=7.2 Score=32.67 Aligned_cols=48 Identities=23% Similarity=0.214 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc
Q 017264 37 ELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLE 84 (374)
Q Consensus 37 ~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~lg 84 (374)
.....+|...+..|+|.-|+..++.++..+|++..+...++.+|..+|
T Consensus 71 d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg 118 (141)
T PF14863_consen 71 DKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLG 118 (141)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHH
Confidence 334444444445555555555555555555555555555555544443
No 406
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=80.33 E-value=6 Score=26.01 Aligned_cols=24 Identities=25% Similarity=0.260 Sum_probs=15.4
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHH
Q 017264 74 WRKATACMKLEEYETAKVALEKGA 97 (374)
Q Consensus 74 ~~lg~~~~~lg~~~eA~~~~~~a~ 97 (374)
+.+|.+|..+|+++.|...++..+
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl 26 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVI 26 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHH
Confidence 456666666666666666666665
No 407
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=79.94 E-value=4.2 Score=29.31 Aligned_cols=30 Identities=47% Similarity=0.490 Sum_probs=22.3
Q ss_pred hHHHHHHHHHHHhccCHHHHHHHHHHHHHh
Q 017264 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEI 31 (374)
Q Consensus 2 a~~l~~~g~~~~~~~~y~~Al~~y~~aL~~ 31 (374)
|..+...|..+=..|+|++|+.+|.+++..
T Consensus 5 A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~ 34 (69)
T PF04212_consen 5 AIELIKKAVEADEAGNYEEALELYKEAIEY 34 (69)
T ss_dssp HHHHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 345667777777888888888888777664
No 408
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=79.70 E-value=9.3 Score=28.29 Aligned_cols=44 Identities=18% Similarity=0.046 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHH-------HhcCCCChhHHHHHHHHHH
Q 017264 72 AYWRKATACMKLEEYETAKVALEKG-------ASLAPGDSRFTNLIKECEE 115 (374)
Q Consensus 72 a~~~lg~~~~~lg~~~eA~~~~~~a-------~~l~p~~~~~~~~~~~~~~ 115 (374)
.+..+|+-+-..|++.+|+.+|+.+ +.+.|+++.......++..
T Consensus 8 ~~a~~AVe~D~~gr~~eAi~~Y~~aIe~L~q~~~~~pD~~~k~~yr~ki~e 58 (75)
T cd02682 8 KYAINAVKAEKEGNAEDAITNYKKAIEVLSQIVKNYPDSPTRLIYEQMINE 58 (75)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHH
Confidence 3445555555566666555555554 4556777654444444433
No 409
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=79.57 E-value=38 Score=34.23 Aligned_cols=115 Identities=14% Similarity=0.028 Sum_probs=82.4
Q ss_pred HHHHHHHHHHHhcc--CHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHH-HccCHHHHHHHHHHHHHhCCCCH------
Q 017264 3 TDLEKKAKEAFIDD--YFELAYDLYSQAIEISPNS---AELFADRAQASI-KLQNFTEAVADANRAIELEPSMS------ 70 (374)
Q Consensus 3 ~~l~~~g~~~~~~~--~y~~Al~~y~~aL~~~p~~---~~~~~~ra~~~~-~l~~~~~Al~~~~~al~l~p~~~------ 70 (374)
..+...|..+-..+ +...+|+.++..+...|.+ +..+..+|..++ -.++++-|..++++|+.+-...+
T Consensus 8 ~aLlGlAe~~rt~~PPkIkk~IkClqA~~~~~is~~veart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~fydvK 87 (629)
T KOG2300|consen 8 EALLGLAEHFRTSGPPKIKKCIKCLQAIFQFQISFLVEARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSFYDVK 87 (629)
T ss_pred HHHHHHHHHHhhcCChhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccHHhhh
Confidence 45666777777777 7889999998888876665 234455555543 36899999999999998764322
Q ss_pred -HHHHHHHHHHHHhc-CHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhh
Q 017264 71 -KAYWRKATACMKLE-EYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE 120 (374)
Q Consensus 71 -~a~~~lg~~~~~lg-~~~eA~~~~~~a~~l~p~~~~~~~~~~~~~~~l~~~ 120 (374)
+++-.++.+|.... .+..|...+.+++++....+ .|-.++.-+|.+.
T Consensus 88 f~a~SlLa~lh~~~~~s~~~~KalLrkaielsq~~p---~wsckllfQLaql 136 (629)
T KOG2300|consen 88 FQAASLLAHLHHQLAQSFPPAKALLRKAIELSQSVP---YWSCKLLFQLAQL 136 (629)
T ss_pred hHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCc---hhhHHHHHHHHHH
Confidence 23445777777776 78889999999999988777 4555555555544
No 410
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=79.54 E-value=8.1 Score=34.35 Aligned_cols=46 Identities=24% Similarity=0.293 Sum_probs=39.8
Q ss_pred HHHHhccCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHccCHHHH
Q 017264 10 KEAFIDDYFELAYDLYSQAIEISPN----SAELFADRAQASIKLQNFTEA 55 (374)
Q Consensus 10 ~~~~~~~~y~~Al~~y~~aL~~~p~----~~~~~~~ra~~~~~l~~~~~A 55 (374)
-.+|...|-++|+.+|.++|++... +++++..+|.+|+++++++.|
T Consensus 148 AtyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 148 ATYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 3566689999999999999998433 589999999999999999876
No 411
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=79.51 E-value=14 Score=33.92 Aligned_cols=50 Identities=22% Similarity=0.284 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC------hhHHHHHHHHHHHHHhh
Q 017264 71 KAYWRKATACMKLEEYETAKVALEKGASLAPGD------SRFTNLIKECEERIAEE 120 (374)
Q Consensus 71 ~a~~~lg~~~~~lg~~~eA~~~~~~a~~l~p~~------~~~~~~~~~~~~~l~~~ 120 (374)
...+.+|.-|+.+|+|++|+..|+.+....-.+ ..+...+..|..+++..
T Consensus 179 ~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~ 234 (247)
T PF11817_consen 179 YLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDV 234 (247)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCH
Confidence 345678999999999999999999986554322 24566666776666543
No 412
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=79.40 E-value=11 Score=30.86 Aligned_cols=59 Identities=15% Similarity=-0.039 Sum_probs=43.3
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHccCHHHHHHHHHHH
Q 017264 4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNS---------------AELFADRAQASIKLQNFTEAVADANRA 62 (374)
Q Consensus 4 ~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~---------------~~~~~~ra~~~~~l~~~~~Al~~~~~a 62 (374)
.+...|+.+++.+++-.+|-+|++|+.+..+- .....++|..+..+|+-+-.+.++..|
T Consensus 3 ~htllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlA 76 (140)
T PF10952_consen 3 KHTLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLA 76 (140)
T ss_pred hHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHH
Confidence 45678999999999999999999999873221 234456777777777777777766544
No 413
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=78.65 E-value=3.7 Score=30.53 Aligned_cols=30 Identities=17% Similarity=0.194 Sum_probs=21.4
Q ss_pred hHHHHHHHHHHHhccCHHHHHHHHHHHHHh
Q 017264 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEI 31 (374)
Q Consensus 2 a~~l~~~g~~~~~~~~y~~Al~~y~~aL~~ 31 (374)
|..+..+|..+=+.|+|++|+.+|..+|+.
T Consensus 6 Ai~~a~~Ave~D~~g~y~eA~~~Y~~aie~ 35 (76)
T cd02681 6 AVQFARLAVQRDQEGRYSEAVFYYKEAAQL 35 (76)
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 445666777777777777777777777664
No 414
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=78.09 E-value=3.8 Score=30.36 Aligned_cols=29 Identities=28% Similarity=0.260 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHHh
Q 017264 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEI 31 (374)
Q Consensus 3 ~~l~~~g~~~~~~~~y~~Al~~y~~aL~~ 31 (374)
..++.+|...=..|+|++|+.+|..||+.
T Consensus 7 i~Lv~~A~~eD~~gny~eA~~lY~~ale~ 35 (75)
T cd02680 7 HFLVTQAFDEDEKGNAEEAIELYTEAVEL 35 (75)
T ss_pred HHHHHHHHHhhHhhhHHHHHHHHHHHHHH
Confidence 35666777777788888888888888775
No 415
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=77.25 E-value=20 Score=26.84 Aligned_cols=57 Identities=11% Similarity=0.062 Sum_probs=43.5
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHH---HHHHHHHhcCHHHHHHHHHH
Q 017264 39 FADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWR---KATACMKLEEYETAKVALEK 95 (374)
Q Consensus 39 ~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~---lg~~~~~lg~~~eA~~~~~~ 95 (374)
.+..|.-++..++.++|+..+.+++..-++....+.. +..+|...|+|.+++.+.-.
T Consensus 9 ~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~ 68 (80)
T PF10579_consen 9 QIEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQ 68 (80)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666778889999999999999998877665554 45677889999888776543
No 416
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=77.05 E-value=42 Score=32.97 Aligned_cols=56 Identities=14% Similarity=-0.008 Sum_probs=42.9
Q ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHHH--ccCHHHHHHHHH
Q 017264 5 LEKKAKEAFIDDYFELAYDLYSQAIEISPN-----SAELFADRAQASIK--LQNFTEAVADAN 60 (374)
Q Consensus 5 l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~-----~~~~~~~ra~~~~~--l~~~~~Al~~~~ 60 (374)
...++..+|..++|..|...|.+++...+. ....+..++.+|.. .=+|.+|...++
T Consensus 133 e~~~~r~l~n~~dy~aA~~~~~~L~~r~l~~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~ 195 (380)
T TIGR02710 133 EQGYARRAINAFDYLFAHARLETLLRRLLSAVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLN 195 (380)
T ss_pred HHHHHHHHHHhcChHHHHHHHHHHHhcccChhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHh
Confidence 345778999999999999999999987532 24566777777765 456778888777
No 417
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=77.05 E-value=4.3 Score=29.92 Aligned_cols=30 Identities=40% Similarity=0.416 Sum_probs=21.7
Q ss_pred hHHHHHHHHHHHhccCHHHHHHHHHHHHHh
Q 017264 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEI 31 (374)
Q Consensus 2 a~~l~~~g~~~~~~~~y~~Al~~y~~aL~~ 31 (374)
|..++.+|...-..|+|++|+.+|.+++..
T Consensus 6 A~~l~~~Av~~D~~g~y~eA~~~Y~~aie~ 35 (75)
T cd02678 6 AIELVKKAIEEDNAGNYEEALRLYQHALEY 35 (75)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 445667777777788888887777777664
No 418
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=76.97 E-value=6.9 Score=22.63 Aligned_cols=28 Identities=36% Similarity=0.463 Sum_probs=16.7
Q ss_pred cCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 017264 16 DYFELAYDLYSQAIEISPNSAELFADRA 43 (374)
Q Consensus 16 ~~y~~Al~~y~~aL~~~p~~~~~~~~ra 43 (374)
|+++.|...|.+++...|.+..++...+
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~ 28 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYA 28 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHH
Confidence 3455666666666666666666555544
No 419
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=76.58 E-value=10 Score=35.70 Aligned_cols=59 Identities=19% Similarity=0.095 Sum_probs=51.0
Q ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 017264 5 LEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAI 63 (374)
Q Consensus 5 l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al 63 (374)
+...+..+...|.+.+|+++.++++.++|-+...+..+-..|..+|+--.|+..|++.-
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 34567788899999999999999999999999999999999999999777777776543
No 420
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=76.45 E-value=11 Score=34.01 Aligned_cols=75 Identities=17% Similarity=0.224 Sum_probs=62.8
Q ss_pred HHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChh---HHHHHHHHHHHHHh
Q 017264 45 ASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSR---FTNLIKECEERIAE 119 (374)
Q Consensus 45 ~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~a~~l~p~~~~---~~~~~~~~~~~l~~ 119 (374)
.+++-+...+|+.++..-++..|.+......+..+|+-.|+|+.|+..++-+-++.|++.. +.+.+-+|++.-..
T Consensus 10 eLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ea~R~e 87 (273)
T COG4455 10 ELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRCEAARNE 87 (273)
T ss_pred HHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHHH
Confidence 4567789999999999999999999999999999999999999999999999999998764 44444455544443
No 421
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=75.34 E-value=8.9 Score=28.04 Aligned_cols=29 Identities=31% Similarity=0.446 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHHh
Q 017264 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEI 31 (374)
Q Consensus 3 ~~l~~~g~~~~~~~~y~~Al~~y~~aL~~ 31 (374)
..+...|..+=..|+|++|+.+|..+++.
T Consensus 7 ~~l~~~Av~~D~~g~~~~Al~~Y~~a~e~ 35 (75)
T cd02656 7 KELIKQAVKEDEDGNYEEALELYKEALDY 35 (75)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 45566777777788888888888777765
No 422
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=75.27 E-value=56 Score=30.70 Aligned_cols=114 Identities=11% Similarity=0.104 Sum_probs=77.1
Q ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHhCCCC----------HHHHHHH----HHHHHHccCHHHHHHHHHHHHHhCCCCH
Q 017264 5 LEKKAKEAFIDDYFELAYDLYSQAIEISPNS----------AELFADR----AQASIKLQNFTEAVADANRAIELEPSMS 70 (374)
Q Consensus 5 l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~----------~~~~~~r----a~~~~~l~~~~~Al~~~~~al~l~p~~~ 70 (374)
+-..|..++...||..|++.++++++.-..+ .+.-..+ -+|+..++++.+++...-+-.+.-.+.+
T Consensus 38 Le~Aad~LvV~rdF~aal~tCerglqsL~~~a~~ee~~~~~~evK~sLcvvGIQALAEmnrWreVLsWvlqyYq~pEklP 117 (309)
T PF07163_consen 38 LEEAADLLVVHRDFQAALETCERGLQSLASDADAEEPAGSSLEVKCSLCVVGIQALAEMNRWREVLSWVLQYYQVPEKLP 117 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchhhhhhhhhhhhHHHHHHHhhHHHHHHHHHHHhcCcccCC
Confidence 3456788899999999999999999863111 1222222 2567889999999998877776666666
Q ss_pred HHHHHHHHHHH-HhcCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHh
Q 017264 71 KAYWRKATACM-KLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAE 119 (374)
Q Consensus 71 ~a~~~lg~~~~-~lg~~~eA~~~~~~a~~l~p~~~~~~~~~~~~~~~l~~ 119 (374)
.-.+.+.+++| ..++.....+ .....-.+|+|..+.....-++-.+..
T Consensus 118 pkIleLCILLysKv~Ep~amle-v~~~WL~~p~Nq~lp~y~~vaELyLl~ 166 (309)
T PF07163_consen 118 PKILELCILLYSKVQEPAAMLE-VASAWLQDPSNQSLPEYGTVAELYLLH 166 (309)
T ss_pred HHHHHHHHHHHHHhcCHHHHHH-HHHHHHhCcccCCchhhHHHHHHHHHH
Confidence 66677777665 5677655444 344556788888766655555444443
No 423
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=74.88 E-value=9.5 Score=28.18 Aligned_cols=30 Identities=23% Similarity=0.149 Sum_probs=22.2
Q ss_pred hHHHHHHHHHHHhccCHHHHHHHHHHHHHh
Q 017264 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEI 31 (374)
Q Consensus 2 a~~l~~~g~~~~~~~~y~~Al~~y~~aL~~ 31 (374)
|..++.+|...-..|+|++|+.+|..+|+.
T Consensus 6 Ai~lv~~Av~~D~~g~y~eA~~lY~~ale~ 35 (75)
T cd02684 6 AIALVVQAVKKDQRGDAAAALSLYCSALQY 35 (75)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 345667777777888888888888777765
No 424
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=73.46 E-value=56 Score=31.51 Aligned_cols=90 Identities=18% Similarity=0.125 Sum_probs=62.9
Q ss_pred HHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC----------------------
Q 017264 10 KEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEP---------------------- 67 (374)
Q Consensus 10 ~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p---------------------- 67 (374)
..+.+..+..+-|+....||+++|..+.+|..+|.- ..-...+|...+.+|++...
T Consensus 192 Q~AWRERnp~~RI~~A~~ALeIN~eCA~AyvLLAEE--Ea~Ti~~AE~l~k~ALka~e~~yr~sqq~qh~~~~~da~~rR 269 (556)
T KOG3807|consen 192 QKAWRERNPPARIKAAYQALEINNECATAYVLLAEE--EATTIVDAERLFKQALKAGETIYRQSQQCQHQSPQHEAQLRR 269 (556)
T ss_pred HHHHHhcCcHHHHHHHHHHHhcCchhhhHHHhhhhh--hhhhHHHHHHHHHHHHHHHHHHHhhHHHHhhhccchhhhhhc
Confidence 455677788888899999999999999988887643 22334455555555553211
Q ss_pred -CCHHHH--HHHHHHHHHhcCHHHHHHHHHHHHhcCC
Q 017264 68 -SMSKAY--WRKATACMKLEEYETAKVALEKGASLAP 101 (374)
Q Consensus 68 -~~~~a~--~~lg~~~~~lg~~~eA~~~~~~a~~l~p 101 (374)
.+...| .|+|.|..++|+..+|+..|+-..+-.|
T Consensus 270 Dtnvl~YIKRRLAMCARklGrlrEA~K~~RDL~ke~p 306 (556)
T KOG3807|consen 270 DTNVLVYIKRRLAMCARKLGRLREAVKIMRDLMKEFP 306 (556)
T ss_pred ccchhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcc
Confidence 122223 4688899999999999999988776665
No 425
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=73.37 E-value=21 Score=39.31 Aligned_cols=103 Identities=18% Similarity=0.173 Sum_probs=73.9
Q ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-------C---------
Q 017264 5 LEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEP-------S--------- 68 (374)
Q Consensus 5 l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p-------~--------- 68 (374)
+-.-|+.+|..+.|+.|--+|+- ..-+..+|..+..+|+|+.|...+++|-...- .
T Consensus 1197 i~~vGdrcf~~~~y~aAkl~y~~--------vSN~a~La~TLV~LgeyQ~AVD~aRKAns~ktWK~VcfaCvd~~EFrlA 1268 (1666)
T KOG0985|consen 1197 IQQVGDRCFEEKMYEAAKLLYSN--------VSNFAKLASTLVYLGEYQGAVDAARKANSTKTWKEVCFACVDKEEFRLA 1268 (1666)
T ss_pred HHHHhHHHhhhhhhHHHHHHHHH--------hhhHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHhchhhhhHH
Confidence 45679999999999999999955 45578899999999999999998887753321 0
Q ss_pred ---------CHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Q 017264 69 ---------MSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEE 115 (374)
Q Consensus 69 ---------~~~a~~~lg~~~~~lg~~~eA~~~~~~a~~l~p~~~~~~~~~~~~~~ 115 (374)
+++-+-.+-..|...|.|++-+..++.++.+.-.+-..-..++.+..
T Consensus 1269 QiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELaiLYs 1324 (1666)
T KOG0985|consen 1269 QICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTELAILYS 1324 (1666)
T ss_pred HhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHHHHH
Confidence 12223334445667888898888888888777665554444554444
No 426
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=73.32 E-value=16 Score=28.93 Aligned_cols=45 Identities=18% Similarity=0.124 Sum_probs=23.5
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 017264 4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIK 48 (374)
Q Consensus 4 ~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~ 48 (374)
....+|...+..|||..|.+...++-+..+.....|..-|.+-..
T Consensus 61 ~al~~Gl~al~~G~~~~A~k~~~~a~~~~~~~~l~~L~AA~AA~~ 105 (108)
T PF07219_consen 61 RALSRGLIALAEGDWQRAEKLLAKAAKLSDNPLLNYLLAARAAQA 105 (108)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 345556666666666666666666655544433333333433333
No 427
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=73.29 E-value=7.2 Score=28.64 Aligned_cols=27 Identities=41% Similarity=0.438 Sum_probs=14.0
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHH
Q 017264 4 DLEKKAKEAFIDDYFELAYDLYSQAIE 30 (374)
Q Consensus 4 ~l~~~g~~~~~~~~y~~Al~~y~~aL~ 30 (374)
.++.+|..+-..|+|++|+.+|.++++
T Consensus 10 ~li~~Av~~d~~g~~~eAl~~Y~~a~e 36 (77)
T smart00745 10 ELISKALKADEAGDYEEALELYKKAIE 36 (77)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344455555555555555555555444
No 428
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=73.07 E-value=51 Score=30.79 Aligned_cols=86 Identities=9% Similarity=0.074 Sum_probs=68.7
Q ss_pred cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHH-HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHH
Q 017264 16 DYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFT-EAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALE 94 (374)
Q Consensus 16 ~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~-~Al~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~ 94 (374)
.+..+-++++++++..+|.|..++..|-.+...+|++. .-+.....++..+..+-.+|-.+-=++...+.|+.-+.+..
T Consensus 92 ~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rELef~~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~ 171 (318)
T KOG0530|consen 92 SDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFRELEFTKLMLDDDAKNYHAWSHRQWVLRFFKDYEDELAYAD 171 (318)
T ss_pred HHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccchHHHHHHHHhccccchhhhHHHHHHHHHHhhHHHHHHHHH
Confidence 34566778888888889999888888888888888888 88888888998888887777777777777777888888777
Q ss_pred HHHhcCC
Q 017264 95 KGASLAP 101 (374)
Q Consensus 95 ~a~~l~p 101 (374)
..++.+-
T Consensus 172 ~Lle~Di 178 (318)
T KOG0530|consen 172 ELLEEDI 178 (318)
T ss_pred HHHHHhh
Confidence 7776653
No 429
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=72.62 E-value=37 Score=34.66 Aligned_cols=82 Identities=15% Similarity=0.031 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC---C----CCHHHHHHHHHHHHHhcC-HHHHHHHHHHHHhcCCCChhHHH
Q 017264 37 ELFADRAQASIKLQNFTEAVADANRAIELE---P----SMSKAYWRKATACMKLEE-YETAKVALEKGASLAPGDSRFTN 108 (374)
Q Consensus 37 ~~~~~ra~~~~~l~~~~~Al~~~~~al~l~---p----~~~~a~~~lg~~~~~lg~-~~eA~~~~~~a~~l~p~~~~~~~ 108 (374)
.-++-+|.++..+|+...|...|..++... . -.+-++|-+|..|..++. ..++..++.+|.....+..---+
T Consensus 450 lk~lL~g~~lR~Lg~~~~a~~~f~i~~~~e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~~dY~lenR 529 (546)
T KOG3783|consen 450 LKYLLKGVILRNLGDSEVAPKCFKIQVEKESKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKAREYASDYELENR 529 (546)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhhccccchhhH
Confidence 345567999999999999999998887432 1 247899999999999999 99999999999988866543222
Q ss_pred HHHHHHHHHH
Q 017264 109 LIKECEERIA 118 (374)
Q Consensus 109 ~~~~~~~~l~ 118 (374)
..-+++..+.
T Consensus 530 Lh~rIqAAl~ 539 (546)
T KOG3783|consen 530 LHMRIQAALH 539 (546)
T ss_pred HHHHHHHHHH
Confidence 3333444443
No 430
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=72.55 E-value=48 Score=34.44 Aligned_cols=83 Identities=13% Similarity=0.055 Sum_probs=69.0
Q ss_pred HHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHH
Q 017264 11 EAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAK 90 (374)
Q Consensus 11 ~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~ 90 (374)
.+.+.+..+.|..+.+.-+--...++..++.+|..+...+..+.|-..|++.+..+|+ ++++.+|.-+++.|-...|.
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 94 (578)
T PRK15490 17 TLKQEKKLAQAVALIDSELPTEALTSLAMLKKAEFLHDVNETERAYALYETLIAQNND--EARYEYARRLYNTGLAKDAQ 94 (578)
T ss_pred HHHHHhhHHHHHHHHHHhCCccchhHHHHHHHhhhhhhhhhhHhHHHHHHHHHHhCCc--chHHHHHHHHHhhhhhhHHH
Confidence 4456666777777777766666666778888999999999999999999999999988 67899999999999998888
Q ss_pred HHHHH
Q 017264 91 VALEK 95 (374)
Q Consensus 91 ~~~~~ 95 (374)
..+++
T Consensus 95 ~~~~~ 99 (578)
T PRK15490 95 LILKK 99 (578)
T ss_pred HHHHH
Confidence 88873
No 431
>KOG4563 consensus Cell cycle-regulated histone H1-binding protein [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=72.42 E-value=8.4 Score=37.23 Aligned_cols=29 Identities=24% Similarity=0.378 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHHh
Q 017264 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEI 31 (374)
Q Consensus 3 ~~l~~~g~~~~~~~~y~~Al~~y~~aL~~ 31 (374)
..+...|+.++..++|+.|...|..|..+
T Consensus 42 e~lv~~G~~~~~~~d~~~Avda~s~A~~l 70 (400)
T KOG4563|consen 42 EELVQAGRRALCNNDIDKAVDALSEATEL 70 (400)
T ss_pred HHHHHhhhHHHhcccHHHHHHHHHHHHHH
Confidence 35677788888888888888888777665
No 432
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=71.80 E-value=8.3 Score=25.37 Aligned_cols=26 Identities=27% Similarity=0.225 Sum_probs=22.4
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHHh
Q 017264 40 ADRAQASIKLQNFTEAVADANRAIEL 65 (374)
Q Consensus 40 ~~ra~~~~~l~~~~~Al~~~~~al~l 65 (374)
+.+|.+|+.+|+++.|...++.++..
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHHc
Confidence 56889999999999999999988853
No 433
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=71.78 E-value=23 Score=31.01 Aligned_cols=50 Identities=26% Similarity=0.276 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCC
Q 017264 52 FTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPG 102 (374)
Q Consensus 52 ~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~a~~l~p~ 102 (374)
....++.+++.++..| ++..+.+++.++..+|+.++|...+.++..+.|.
T Consensus 127 l~~~~~~a~~~l~~~P-~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP~ 176 (193)
T PF11846_consen 127 LEAYIEWAERLLRRRP-DPNVYQRYALALALLGDPEEARQWLARARRLYPA 176 (193)
T ss_pred HHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence 4455666677777777 6678899999999999999999999999999993
No 434
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=71.33 E-value=21 Score=26.33 Aligned_cols=29 Identities=21% Similarity=0.441 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHHh
Q 017264 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEI 31 (374)
Q Consensus 3 ~~l~~~g~~~~~~~~y~~Al~~y~~aL~~ 31 (374)
..++.+|...-..|+|++|+.+|..+|+.
T Consensus 7 ~~l~~~Ave~d~~~~y~eA~~~Y~~~i~~ 35 (75)
T cd02677 7 AELIRLALEKEEEGDYEAAFEFYRAGVDL 35 (75)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 45666777777777777777777777664
No 435
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=70.24 E-value=16 Score=39.14 Aligned_cols=28 Identities=21% Similarity=0.172 Sum_probs=24.7
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHHh
Q 017264 4 DLEKKAKEAFIDDYFELAYDLYSQAIEI 31 (374)
Q Consensus 4 ~l~~~g~~~~~~~~y~~Al~~y~~aL~~ 31 (374)
-++..|+.+|.+|+|++|...|-+.|..
T Consensus 370 i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~ 397 (933)
T KOG2114|consen 370 IHRKYGDYLYGKGDFDEATDQYIETIGF 397 (933)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHccc
Confidence 4577899999999999999999888775
No 436
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=70.12 E-value=26 Score=35.80 Aligned_cols=70 Identities=10% Similarity=0.172 Sum_probs=37.2
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 017264 27 QAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGA 97 (374)
Q Consensus 27 ~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~a~ 97 (374)
+-|+.+|.+...|+.+-.-+... -+++....|++.+...|..+.+|.......+..++|+.-...|.+|+
T Consensus 11 ~rie~nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCL 80 (656)
T KOG1914|consen 11 ERIEENPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCL 80 (656)
T ss_pred HHHhcCCccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 34455555555555554443332 55555555555555555555555555555555555555444444443
No 437
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=69.85 E-value=53 Score=26.24 Aligned_cols=83 Identities=12% Similarity=-0.053 Sum_probs=39.2
Q ss_pred HHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCH
Q 017264 7 KKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEY 86 (374)
Q Consensus 7 ~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~lg~~ 86 (374)
..|....-....++|...++-.-......-.+..-|...+...|+|++|+. +......++.---++.|-.++|--
T Consensus 11 ElAL~atG~HcH~EA~tIa~wL~~~~~~~E~v~lIr~~sLmNrG~Yq~ALl-----~~~~~~~pdL~p~~AL~a~klGL~ 85 (116)
T PF09477_consen 11 ELALMATGHHCHQEANTIADWLEQEGEMEEVVALIRLSSLMNRGDYQEALL-----LPQCHCYPDLEPWAALCAWKLGLA 85 (116)
T ss_dssp HHHHHHHTTT-HHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHTT-HHHHHH-----HHTTS--GGGHHHHHHHHHHCT-H
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhhHHHHHHHH-----hcccCCCccHHHHHHHHHHhhccH
Confidence 344444445555666666654333333233344445566666677766622 223333333333345555666666
Q ss_pred HHHHHHHH
Q 017264 87 ETAKVALE 94 (374)
Q Consensus 87 ~eA~~~~~ 94 (374)
..+...|.
T Consensus 86 ~~~e~~l~ 93 (116)
T PF09477_consen 86 SALESRLT 93 (116)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66665555
No 438
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=69.65 E-value=27 Score=30.59 Aligned_cols=75 Identities=11% Similarity=0.023 Sum_probs=45.6
Q ss_pred HHHHHHhccCHHHHHHHHHHH-HHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Q 017264 8 KAKEAFIDDYFELAYDLYSQA-IEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKL 83 (374)
Q Consensus 8 ~g~~~~~~~~y~~Al~~y~~a-L~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~l 83 (374)
.|..++..|-|+.-....+.. -..+|.-..+.-.+|.+-++.|+|..|...|.+... +.+-+....++++++..+
T Consensus 138 aa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~-Da~aprnirqRAq~mldl 213 (221)
T COG4649 138 AAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN-DAQAPRNIRQRAQIMLDL 213 (221)
T ss_pred HHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc-cccCcHHHHHHHHHHHHH
Confidence 344455555555544433321 111333345666677777888999999998877665 556667777777776554
No 439
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=68.82 E-value=14 Score=21.17 Aligned_cols=28 Identities=21% Similarity=0.210 Sum_probs=18.3
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 017264 51 NFTEAVADANRAIELEPSMSKAYWRKAT 78 (374)
Q Consensus 51 ~~~~Al~~~~~al~l~p~~~~a~~~lg~ 78 (374)
+++.|...|++++...|.....|..++.
T Consensus 2 ~~~~~r~i~e~~l~~~~~~~~~W~~y~~ 29 (33)
T smart00386 2 DIERARKIYERALEKFPKSVELWLKYAE 29 (33)
T ss_pred cHHHHHHHHHHHHHHCCCChHHHHHHHH
Confidence 4566666777777777766666665544
No 440
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=67.01 E-value=67 Score=40.09 Aligned_cols=110 Identities=17% Similarity=0.117 Sum_probs=74.1
Q ss_pred HHHHHHHHHhcc-CHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 017264 5 LEKKAKEAFIDD-YFELAYDLYSQAIEI---SPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATAC 80 (374)
Q Consensus 5 l~~~g~~~~~~~-~y~~Al~~y~~aL~~---~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~ 80 (374)
++.++..+++.. .+..+++.....=-. +...++.+..+|..+.++|++++|-..|..|++++...+++|+..|..+
T Consensus 2777 ~req~~c~l~~~~e~~~gLevi~sTNl~yF~~~q~aeff~lkG~f~~kL~~~eeAn~~fs~AvQi~~~l~KaW~~Wg~y~ 2856 (3550)
T KOG0889|consen 2777 LREQAKCYLQNKNELKTGLEVIESTNLMYFSDRQKAEFFTLKGMFLEKLGKFEEANKAFSAAVQIDDGLGKAWAEWGKYL 2856 (3550)
T ss_pred HHHHHHHHhcChHHHHHHHHHHhcccHHHHhhHHHHHHHHhhhHHHHHhcCcchhHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 455566666555 444444444321000 1122678888999999999999999999999999999999999999987
Q ss_pred HHhc----C----HHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Q 017264 81 MKLE----E----YETAKVALEKGASLAPGDSRFTNLIKECEE 115 (374)
Q Consensus 81 ~~lg----~----~~eA~~~~~~a~~l~p~~~~~~~~~~~~~~ 115 (374)
.++- . -..|+.||-+|....-+.. .+..++++.-
T Consensus 2857 ~~~f~~e~~ni~~a~~avsCyLqA~~~~~~sk-aRk~iakvLw 2898 (3550)
T KOG0889|consen 2857 DNRFNKEPVNISFACNAVSCYLQAARLYNSSK-ARKLIAKVLW 2898 (3550)
T ss_pred HHHHhccCcccHHHHHHHHHHHHHhccccchh-hHHHHHHHHH
Confidence 6521 1 2467888888877664432 4444444443
No 441
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=66.02 E-value=80 Score=34.38 Aligned_cols=102 Identities=20% Similarity=0.138 Sum_probs=64.8
Q ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHhCCCC----------HHHHHHHHHHHHH----------c--cCHHHHHHH--HH
Q 017264 5 LEKKAKEAFIDDYFELAYDLYSQAIEISPNS----------AELFADRAQASIK----------L--QNFTEAVAD--AN 60 (374)
Q Consensus 5 l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~----------~~~~~~ra~~~~~----------l--~~~~~Al~~--~~ 60 (374)
-.+.|..+...|.|.+|++.|..+|-.-|-- +.-+...+.-|+- + .....+++. |=
T Consensus 994 kl~~gy~ltt~gKf~eAie~Frsii~~i~l~vvd~~~e~aea~~li~i~~eYi~gL~~E~~Rr~l~~~~~~~~~ElAaYF 1073 (1202)
T KOG0292|consen 994 KLQKGYKLTTEGKFGEAIEKFRSIIYSIPLLVVDSKEEEAEADELIKICREYIVGLSVELERRKLKKPNLEQQLELAAYF 1073 (1202)
T ss_pred HHHHHHhhhccCcHHHHHHHHHHHHhheeEEEecchhhHHHHHHHHHHHHHHHhhheeeeeecccCCchHHHHHHHHHHh
Confidence 4678999999999999999999988764321 2233333322321 1 233444221 11
Q ss_pred HHHHhCCCCHHHHHHHHH-HHHHhcCHHHHHHHHHHHHhcCCCChhH
Q 017264 61 RAIELEPSMSKAYWRKAT-ACMKLEEYETAKVALEKGASLAPGDSRF 106 (374)
Q Consensus 61 ~al~l~p~~~~a~~~lg~-~~~~lg~~~eA~~~~~~a~~l~p~~~~~ 106 (374)
.-+.|.|-+.-.-++.|+ .++.+++|..|.....+.+++.|..+.+
T Consensus 1074 t~~~Lqp~H~ilalrtA~n~ffK~kN~ktAs~fa~rLlel~~~~~~A 1120 (1202)
T KOG0292|consen 1074 THCKLQPMHRILALRTAMNVFFKLKNLKTAAEFARRLLELAPSPPVA 1120 (1202)
T ss_pred hcCCCCcHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCChHH
Confidence 112344444333444444 6789999999999999999999987654
No 442
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=64.71 E-value=51 Score=34.03 Aligned_cols=98 Identities=11% Similarity=0.091 Sum_probs=60.8
Q ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHH-HHHccCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHH
Q 017264 5 LEKKAKEAFIDDYFELAYDLYSQAIEISPN-SAELFADRAQA-SIKLQNFTEAVADANRAIELE--PSMSKAYWRKATAC 80 (374)
Q Consensus 5 l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~-~~~~~~~ra~~-~~~l~~~~~Al~~~~~al~l~--p~~~~a~~~lg~~~ 80 (374)
++..-..+-++|-+..|++.+.-.+.++|. ++.+...+-.. .++..+|+==++.++..-..+ ...+..-|.+|+++
T Consensus 345 l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~~~PN~~yS~AlA~ 424 (665)
T KOG2422|consen 345 LFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKLSQLPNFGYSLALAR 424 (665)
T ss_pred HHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHhhcCCchHHHHHHH
Confidence 344445667889999999999999999998 66544433322 234455555555444332111 12233446667766
Q ss_pred HHhcC-----HHHHHHHHHHHHhcCCC
Q 017264 81 MKLEE-----YETAKVALEKGASLAPG 102 (374)
Q Consensus 81 ~~lg~-----~~eA~~~~~~a~~l~p~ 102 (374)
+.+.. -..|+..+.+|+.+.|.
T Consensus 425 f~l~~~~~~~rqsa~~~l~qAl~~~P~ 451 (665)
T KOG2422|consen 425 FFLRKNEEDDRQSALNALLQALKHHPL 451 (665)
T ss_pred HHHhcCChhhHHHHHHHHHHHHHhCcH
Confidence 65443 34688889999988874
No 443
>COG4856 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=64.23 E-value=18 Score=35.07 Aligned_cols=81 Identities=16% Similarity=0.134 Sum_probs=57.0
Q ss_pred CcCcc---ccccCCeEEEEEEeCCCCCCceEEEEeeeEEEEEEEcCCCCeeeeccccccccccCceEEEEcCcEEEEEEe
Q 017264 173 KYRHE---FYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVLSTKVEIRLA 249 (374)
Q Consensus 173 ~~r~~---W~Qt~~~V~i~i~~k~~~~~~v~v~~~~~~l~v~~~~~~~~~y~~~~~L~~~I~p~~s~~~v~~~kiei~L~ 249 (374)
.++|| .+-++-.=+|+|+++|.+.-.+..++.+. |+|.+.+.+-..=..+.+|-++..|+.-++.|.+.++-+++.
T Consensus 55 dvlYD~~~y~isg~~etV~Vtl~G~ns~~~~~~~~~d-FkV~ADLt~a~~Gt~evkl~ve~l~~~ltvsV~P~~~~Vti~ 133 (403)
T COG4856 55 DVLYDSDKYFISGQPETVTVTLKGPNSIVLKSEKPED-FKVVADLTHAGVGTHEVKLQVEGLPDGLTVSVNPEKATVTIE 133 (403)
T ss_pred EEEEccccccccCCceEEEEEEeCCcceeeeeecCcC-eEEEEEhhhcCCCceEeeeEeecCCCCceEEEccceeEEEEe
Confidence 44554 56666667778888886655555666555 777766532222234677888999999999999999999999
Q ss_pred ecCCC
Q 017264 250 KAEPI 254 (374)
Q Consensus 250 K~~~~ 254 (374)
|+...
T Consensus 134 kk~tk 138 (403)
T COG4856 134 KKVTK 138 (403)
T ss_pred eeeEE
Confidence 97654
No 444
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=64.21 E-value=90 Score=32.74 Aligned_cols=89 Identities=7% Similarity=-0.005 Sum_probs=63.3
Q ss_pred HHHHHHHHhccCHHHHHHHHHHHHHhCCC-------C-------------------HHHHHHHHHHHHHccCHHHHHHHH
Q 017264 6 EKKAKEAFIDDYFELAYDLYSQAIEISPN-------S-------------------AELFADRAQASIKLQNFTEAVADA 59 (374)
Q Consensus 6 ~~~g~~~~~~~~y~~Al~~y~~aL~~~p~-------~-------------------~~~~~~ra~~~~~l~~~~~Al~~~ 59 (374)
+--|..++..+..+.|.+++.++++.-.. . ...++..+.+..-++++..|....
T Consensus 305 ~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~~~~~~~~~a~~~l 384 (608)
T PF10345_consen 305 FLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQCYLLFYQIWCNFIRGDWSKATQEL 384 (608)
T ss_pred HHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHH
Confidence 44566677777776777777776665111 0 234445566667779999998888
Q ss_pred HHHHHhCC---------CCHHHHHHHHHHHHHhcCHHHHHHHHH
Q 017264 60 NRAIELEP---------SMSKAYWRKATACMKLEEYETAKVALE 94 (374)
Q Consensus 60 ~~al~l~p---------~~~~a~~~lg~~~~~lg~~~eA~~~~~ 94 (374)
..+..... -.+..+|-.|..+...|+.+.|+..|.
T Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~ 428 (608)
T PF10345_consen 385 EFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQ 428 (608)
T ss_pred HHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHh
Confidence 87776532 246788999999999999999999998
No 445
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=63.63 E-value=53 Score=31.08 Aligned_cols=115 Identities=13% Similarity=0.068 Sum_probs=70.6
Q ss_pred HHHHHHHHhccCHHHHHHHHHHHHHhCCC--------CHHHHHHHHHHHHHccCHHH----------HHHHHH-------
Q 017264 6 EKKAKEAFIDDYFELAYDLYSQAIEISPN--------SAELFADRAQASIKLQNFTE----------AVADAN------- 60 (374)
Q Consensus 6 ~~~g~~~~~~~~y~~Al~~y~~aL~~~p~--------~~~~~~~ra~~~~~l~~~~~----------Al~~~~------- 60 (374)
...|+.+.+.+++++|+..|.+.|...-. .-.....++..|...|++.. +..+|.
T Consensus 7 le~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Ki 86 (421)
T COG5159 7 LELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKI 86 (421)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHH
Confidence 57889999999999999999999887211 13466778888888776542 222222
Q ss_pred --HHHHhCCC---C------------------HHHH------HHHHHHHHHhcCHHHHHHHHHHHHh----cC--CCChh
Q 017264 61 --RAIELEPS---M------------------SKAY------WRKATACMKLEEYETAKVALEKGAS----LA--PGDSR 105 (374)
Q Consensus 61 --~al~l~p~---~------------------~~a~------~~lg~~~~~lg~~~eA~~~~~~a~~----l~--p~~~~ 105 (374)
..++..|. + -+.+ ..+..+++..|.|.+|+....-.+. ++ +.-..
T Consensus 87 irtLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~ 166 (421)
T COG5159 87 IRTLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLIT 166 (421)
T ss_pred HHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceee
Confidence 12222221 1 1112 2357788999999999987654432 22 12223
Q ss_pred HHHHHHHHHHHHHhh
Q 017264 106 FTNLIKECEERIAEE 120 (374)
Q Consensus 106 ~~~~~~~~~~~l~~~ 120 (374)
+.....++.-++.+.
T Consensus 167 vhllESKvyh~irnv 181 (421)
T COG5159 167 VHLLESKVYHEIRNV 181 (421)
T ss_pred hhhhhHHHHHHHHhh
Confidence 555556666666664
No 446
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=63.19 E-value=84 Score=29.09 Aligned_cols=91 Identities=18% Similarity=0.004 Sum_probs=54.9
Q ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHccCHH-HHHHHHHHHHHhC------CCCHHH
Q 017264 5 LEKKAKEAFIDDYFELAYDLYSQAIEI-----SPNSAELFADRAQASIKLQNFT-EAVADANRAIELE------PSMSKA 72 (374)
Q Consensus 5 l~~~g~~~~~~~~y~~Al~~y~~aL~~-----~p~~~~~~~~ra~~~~~l~~~~-~Al~~~~~al~l~------p~~~~a 72 (374)
+..-+..+++.+++..|.++..-.|+. .+.+.....+++.++.....-+ +-....++|+.-. -.++..
T Consensus 13 L~~Ga~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~p~r~~fi~~ai~WS~~~~~~~Gdp~L 92 (260)
T PF04190_consen 13 LYSGALILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEEPERKKFIKAAIKWSKFGSYKFGDPEL 92 (260)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-TTHHHHHHHHHHHHHTSS-TT--HHH
T ss_pred HHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHccCCCCCCCHHH
Confidence 455666777888888777765554443 3444555566777766664333 2233334444432 257889
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHH
Q 017264 73 YWRKATACMKLEEYETAKVALEK 95 (374)
Q Consensus 73 ~~~lg~~~~~lg~~~eA~~~~~~ 95 (374)
|..+|..|++.++|.+|...|-.
T Consensus 93 H~~~a~~~~~e~~~~~A~~Hfl~ 115 (260)
T PF04190_consen 93 HHLLAEKLWKEGNYYEAERHFLL 115 (260)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHT
T ss_pred HHHHHHHHHhhccHHHHHHHHHh
Confidence 99999999999999999988754
No 447
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=62.60 E-value=32 Score=30.04 Aligned_cols=49 Identities=22% Similarity=0.196 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Q 017264 18 FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEP 67 (374)
Q Consensus 18 y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p 67 (374)
....++...+.++..|+ +..+.+++.++..+|+.++|.+...++..+.|
T Consensus 127 l~~~~~~a~~~l~~~P~-~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 127 LEAYIEWAERLLRRRPD-PNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred HHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 34455666667777776 78889999999999999999999999999999
No 448
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=61.61 E-value=87 Score=34.00 Aligned_cols=82 Identities=16% Similarity=0.021 Sum_probs=64.6
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC------HHH
Q 017264 4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNS-----AELFADRAQASIKLQNFTEAVADANRAIELEPSM------SKA 72 (374)
Q Consensus 4 ~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~-----~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~------~~a 72 (374)
...-+|.++...++.+.|+++.+.++..-|.+ ..++...|.++.-.|++.+|+.+...+.++.... ..+
T Consensus 460 ~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~ 539 (894)
T COG2909 460 FQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWS 539 (894)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHH
Confidence 34457888899999999999999999997765 4577778888888999999999988888874322 334
Q ss_pred HHHHHHHHHHhcC
Q 017264 73 YWRKATACMKLEE 85 (374)
Q Consensus 73 ~~~lg~~~~~lg~ 85 (374)
.+..+.++...|+
T Consensus 540 ~~~~s~il~~qGq 552 (894)
T COG2909 540 LLQQSEILEAQGQ 552 (894)
T ss_pred HHHHHHHHHHhhH
Confidence 4556788888884
No 449
>COG2015 Alkyl sulfatase and related hydrolases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=61.44 E-value=19 Score=36.23 Aligned_cols=50 Identities=18% Similarity=0.081 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHH
Q 017264 38 LFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYE 87 (374)
Q Consensus 38 ~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~ 87 (374)
....+|.--+..|+|.=+.+...+++-.+|++..+....|.+|.++|.-.
T Consensus 454 rVl~la~ea~~kGdyrW~a~lln~~VfAdp~n~~Ar~L~Ad~lEQLgYqa 503 (655)
T COG2015 454 RVLELAREAFDKGDYRWAAELLNQAVFADPGNKAARELQADALEQLGYQA 503 (655)
T ss_pred HHHHHHHHHHhcccchHHHHHHhhHHhcCCccHHHHHHHHhHHHHhhhhh
Confidence 34455555556666666666666666666666666666666666666543
No 450
>PF13226 DUF4034: Domain of unknown function (DUF4034)
Probab=59.98 E-value=54 Score=30.79 Aligned_cols=68 Identities=19% Similarity=0.111 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHc----------------------cCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 017264 20 LAYDLYSQAIEISPNSAELFADRAQASIKL----------------------QNFTEAVADANRAIELEPSMSKAYWRKA 77 (374)
Q Consensus 20 ~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l----------------------~~~~~Al~~~~~al~l~p~~~~a~~~lg 77 (374)
.-+..++.-+...|.+..+++.+|.++... .-.+.|..++.+|+.++|....++..+-
T Consensus 61 ~~~~~LkaWv~a~P~Sy~A~La~g~~~~~~Aw~~RG~~~A~~V~~~~W~~~~~~~d~A~~~ll~A~~l~pr~~~A~~~m~ 140 (277)
T PF13226_consen 61 ARLAVLKAWVAACPKSYHAHLAMGMYWVHRAWDIRGSGYASTVTEAQWLGAHQACDQAVAALLKAIELSPRPVAAAIGMI 140 (277)
T ss_pred hHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHccchhcccCHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHH
Confidence 456777888888999999999988887654 2244577788888888888888888877
Q ss_pred HHHHHhcCHH
Q 017264 78 TACMKLEEYE 87 (374)
Q Consensus 78 ~~~~~lg~~~ 87 (374)
.+...+|+.+
T Consensus 141 ~~s~~fgeP~ 150 (277)
T PF13226_consen 141 NISAYFGEPD 150 (277)
T ss_pred HHHhhcCCch
Confidence 7777777753
No 451
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]
Probab=59.89 E-value=69 Score=28.31 Aligned_cols=58 Identities=17% Similarity=0.104 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc------------------------cCHHHHHHHHHHHHHhCCCCHHHH
Q 017264 18 FELAYDLYSQAIEISPNSAELFADRAQASIKL------------------------QNFTEAVADANRAIELEPSMSKAY 73 (374)
Q Consensus 18 y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l------------------------~~~~~Al~~~~~al~l~p~~~~a~ 73 (374)
...|+++++++..+.- ..+.++++..|+.- ++.+.|++.+-+|++++ ++.+.
T Consensus 128 ~~Ka~~y~traCdl~~--~~aCf~LS~m~~~g~~k~~t~ap~~g~p~~~~~~~~~~kDMdka~qfa~kACel~--~~~aC 203 (248)
T KOG4014|consen 128 SEKAERYMTRACDLED--GEACFLLSTMYMGGKEKFKTNAPGEGKPLDRAELGSLSKDMDKALQFAIKACELD--IPQAC 203 (248)
T ss_pred cHHHHHHHHHhccCCC--chHHHHHHHHHhccchhhcccCCCCCCCcchhhhhhhhHhHHHHHHHHHHHHhcC--ChHHH
Confidence 5678888888877643 34555555555432 45556666666666655 33344
Q ss_pred HHHHHH
Q 017264 74 WRKATA 79 (374)
Q Consensus 74 ~~lg~~ 79 (374)
.++.++
T Consensus 204 AN~SrM 209 (248)
T KOG4014|consen 204 ANVSRM 209 (248)
T ss_pred hhHHHH
Confidence 444443
No 452
>PF12854 PPR_1: PPR repeat
Probab=59.84 E-value=21 Score=21.65 Aligned_cols=26 Identities=12% Similarity=0.014 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHH
Q 017264 36 AELFADRAQASIKLQNFTEAVADANR 61 (374)
Q Consensus 36 ~~~~~~ra~~~~~l~~~~~Al~~~~~ 61 (374)
...|..+-.+|.+.|+.++|++.+++
T Consensus 7 ~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 7 VVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred HhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 45677777888888888888887754
No 453
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=59.51 E-value=1.2e+02 Score=32.95 Aligned_cols=94 Identities=20% Similarity=0.044 Sum_probs=74.7
Q ss_pred HHHHHHHhccCHHHHHHHHHHHHHhCCC--C-------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC-----HHH
Q 017264 7 KKAKEAFIDDYFELAYDLYSQAIEISPN--S-------AELFADRAQASIKLQNFTEAVADANRAIELEPSM-----SKA 72 (374)
Q Consensus 7 ~~g~~~~~~~~y~~Al~~y~~aL~~~p~--~-------~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~-----~~a 72 (374)
..|=.+.....|.+|-.+..++...-+. . +.+-.-+|.+....++++.|+..++.++..=|.. .-+
T Consensus 420 l~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~ 499 (894)
T COG2909 420 LQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVA 499 (894)
T ss_pred HHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhh
Confidence 4566777888999999988887776443 1 3555667888888999999999999999876642 446
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcC
Q 017264 73 YWRKATACMKLEEYETAKVALEKGASLA 100 (374)
Q Consensus 73 ~~~lg~~~~~lg~~~eA~~~~~~a~~l~ 100 (374)
+...|.+..-.|+|++|+.+...+.++.
T Consensus 500 ~sv~~~a~~~~G~~~~Al~~~~~a~~~a 527 (894)
T COG2909 500 LSVLGEAAHIRGELTQALALMQQAEQMA 527 (894)
T ss_pred hhhhhHHHHHhchHHHHHHHHHHHHHHH
Confidence 7778999999999999999999887763
No 454
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=58.89 E-value=49 Score=26.15 Aligned_cols=41 Identities=17% Similarity=0.157 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Q 017264 72 AYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERI 117 (374)
Q Consensus 72 a~~~lg~~~~~lg~~~eA~~~~~~a~~l~p~~~~~~~~~~~~~~~l 117 (374)
+-+.+...+.+.|+|++|....+.. + .+++.-|++-|.-++
T Consensus 41 v~lIRlsSLmNrG~Yq~Al~l~~~~----~-~pdlepw~ALce~rl 81 (115)
T TIGR02508 41 VQLIRLSSLMNRGDYQSALQLGNKL----C-YPDLEPWLALCEWRL 81 (115)
T ss_pred HHHHHHHHHHccchHHHHHHhcCCC----C-CchHHHHHHHHHHhh
Confidence 3344455556666666655444332 1 344555555554443
No 455
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=58.74 E-value=24 Score=35.52 Aligned_cols=80 Identities=11% Similarity=0.072 Sum_probs=47.6
Q ss_pred HHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHH
Q 017264 9 AKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIEL--------EPSMSKAYWRKATAC 80 (374)
Q Consensus 9 g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l--------~p~~~~a~~~lg~~~ 80 (374)
-..+.+.|+++.|++... .-++...|..+|...+..|+++-|...|.++-.. --++.+.+-.++...
T Consensus 325 FeLAl~lg~L~~A~~~a~-----~~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d~~~L~lLy~~~g~~~~L~kl~~~a 399 (443)
T PF04053_consen 325 FELALQLGNLDIALEIAK-----ELDDPEKWKQLGDEALRQGNIELAEECYQKAKDFSGLLLLYSSTGDREKLSKLAKIA 399 (443)
T ss_dssp HHHHHHCT-HHHHHHHCC-----CCSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT-HHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred hHHHHhcCCHHHHHHHHH-----hcCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcCccccHHHHHHhCCHHHHHHHHHHH
Confidence 334444444444444332 2456788999999999999999888877654322 234555566666666
Q ss_pred HHhcCHHHHHHHH
Q 017264 81 MKLEEYETAKVAL 93 (374)
Q Consensus 81 ~~lg~~~eA~~~~ 93 (374)
...|++.-|..++
T Consensus 400 ~~~~~~n~af~~~ 412 (443)
T PF04053_consen 400 EERGDINIAFQAA 412 (443)
T ss_dssp HHTT-HHHHHHHH
T ss_pred HHccCHHHHHHHH
Confidence 6666666555544
No 456
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=58.11 E-value=96 Score=30.82 Aligned_cols=95 Identities=18% Similarity=0.068 Sum_probs=56.8
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHH-------HHHHHHccC--------------HHHHHHHHHHH
Q 017264 4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADR-------AQASIKLQN--------------FTEAVADANRA 62 (374)
Q Consensus 4 ~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~r-------a~~~~~l~~--------------~~~Al~~~~~a 62 (374)
.++..|+.+|..+||+.|+..|..+.+---++ .++..+ |.|++..+. ++.|...|.++
T Consensus 210 q~R~LAD~aFml~Dy~~A~s~Y~~~k~Df~~D-kaw~~~A~~~Em~alsl~~~~~~~~~k~~~~~~~~~le~A~~~Y~~~ 288 (414)
T PF12739_consen 210 QMRRLADLAFMLRDYELAYSTYRLLKKDFKND-KAWKYLAGAQEMAALSLLMQGQSISAKIRKDEIEPYLENAYYTYLKS 288 (414)
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHHHhhc-hhHHHHHhHHHHHHHHHHhcCCCCccccccccHHHHHHHHHHHHHhh
Confidence 46789999999999999999998877653333 223333 334444332 22333334332
Q ss_pred H----HhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Q 017264 63 I----ELEPSMSKAYWRKATACMKLEEYETAKVALEKGASL 99 (374)
Q Consensus 63 l----~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~a~~l 99 (374)
- .....-..+.+..+.++...+.|.+|...+-+....
T Consensus 289 ~~~~~~~~~~a~R~~ll~~ell~~~~~~~~a~~~~~~~~~~ 329 (414)
T PF12739_consen 289 ALPRCSLPYYALRCALLLAELLKSRGGYWEAADQLIRWTSE 329 (414)
T ss_pred hccccccccchHHHHHHHHHHHHhcCccHHHHHHHHHHHHH
Confidence 1 111122345666677777888888877766665543
No 457
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=57.56 E-value=26 Score=33.78 Aligned_cols=94 Identities=13% Similarity=-0.002 Sum_probs=70.5
Q ss_pred HHHHHHHhccCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC------C-CHHHH
Q 017264 7 KKAKEAFIDDYFELAYDLYSQAIEI------SPNSAELFADRAQASIKLQNFTEAVADANRAIELEP------S-MSKAY 73 (374)
Q Consensus 7 ~~g~~~~~~~~y~~Al~~y~~aL~~------~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p------~-~~~a~ 73 (374)
.....|+..++|.+|+.+....++. .+.-.+.+..-+.+|+.+.+..+|...+.-|--... . .+..=
T Consensus 133 rli~Ly~d~~~YteAlaL~~~L~rElKKlDDK~lLvev~llESK~y~~l~Nl~KakasLTsART~AnaiYcpPqlQa~lD 212 (411)
T KOG1463|consen 133 RLIRLYNDTKRYTEALALINDLLRELKKLDDKILLVEVHLLESKAYHALRNLPKAKASLTSARTTANAIYCPPQLQATLD 212 (411)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhcccccCHHHHHHHH
Confidence 4667899999999999998887765 222356777788899999999988887765544332 1 23344
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhcC
Q 017264 74 WRKATACMKLEEYETAKVALEKGASLA 100 (374)
Q Consensus 74 ~~lg~~~~~lg~~~eA~~~~~~a~~l~ 100 (374)
+.-|+.+..-.+|..|..+|-.+++-.
T Consensus 213 LqSGIlha~ekDykTafSYFyEAfEgf 239 (411)
T KOG1463|consen 213 LQSGILHAAEKDYKTAFSYFYEAFEGF 239 (411)
T ss_pred HhccceeecccccchHHHHHHHHHccc
Confidence 556888888899999999998888753
No 458
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=57.38 E-value=59 Score=24.07 Aligned_cols=19 Identities=16% Similarity=0.177 Sum_probs=7.6
Q ss_pred HHHHHHhcCHHHHHHHHHH
Q 017264 77 ATACMKLEEYETAKVALEK 95 (374)
Q Consensus 77 g~~~~~lg~~~eA~~~~~~ 95 (374)
|+-+-..|+|.+|+.+|..
T Consensus 13 Ave~D~~g~y~eAl~~Y~~ 31 (77)
T cd02683 13 AVELDQEGRFQEALVCYQE 31 (77)
T ss_pred HHHHHHhccHHHHHHHHHH
Confidence 3333344444444444433
No 459
>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 [].; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.
Probab=57.29 E-value=27 Score=35.87 Aligned_cols=24 Identities=13% Similarity=0.111 Sum_probs=11.0
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHH
Q 017264 73 YWRKATACMKLEEYETAKVALEKG 96 (374)
Q Consensus 73 ~~~lg~~~~~lg~~~eA~~~~~~a 96 (374)
|..+|-.||+.++|.+|+.++..+
T Consensus 321 Yty~gg~~yR~~~~~eA~~~Wa~a 344 (618)
T PF05053_consen 321 YTYLGGYYYRHKRYREALRSWAEA 344 (618)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred ceehhhHHHHHHHHHHHHHHHHHH
Confidence 444444455555555555444443
No 460
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=56.34 E-value=90 Score=32.28 Aligned_cols=84 Identities=17% Similarity=0.104 Sum_probs=65.2
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHH-HHHHHHhcCHHHHHHHHHHHH
Q 017264 19 ELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRK-ATACMKLEEYETAKVALEKGA 97 (374)
Q Consensus 19 ~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~l-g~~~~~lg~~~eA~~~~~~a~ 97 (374)
..+...|+..|...|....+|...|..-.++|..+.++..|+++++--|.....|..+ +.+....|+...=...|++|.
T Consensus 62 ~~~r~~y~~fL~kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~aip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~ 141 (577)
T KOG1258|consen 62 DALREVYDIFLSKYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQAIPLSVDLWLSYLAFLKNNNGDPETLRDLFERAK 141 (577)
T ss_pred HHHHHHHHHHHhhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccCCCHHHHHHHHHHHH
Confidence 4555678888888999888999999999999999999999999999988777776654 344445666666666777776
Q ss_pred hcCCC
Q 017264 98 SLAPG 102 (374)
Q Consensus 98 ~l~p~ 102 (374)
.+...
T Consensus 142 ~~vG~ 146 (577)
T KOG1258|consen 142 SYVGL 146 (577)
T ss_pred Hhccc
Confidence 66543
No 461
>PF10938 YfdX: YfdX protein; InterPro: IPR021236 YfdX is a protein found in Proteobacteria of unknown function. The protein coding for this gene is regulated by EvgA in Escherichia coli []. ; PDB: 3DZA_C.
Probab=54.70 E-value=1e+02 Score=26.17 Aligned_cols=95 Identities=20% Similarity=0.127 Sum_probs=66.0
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHHh-------CCCC--------------------------------HHHHHHHHH
Q 017264 4 DLEKKAKEAFIDDYFELAYDLYSQAIEI-------SPNS--------------------------------AELFADRAQ 44 (374)
Q Consensus 4 ~l~~~g~~~~~~~~y~~Al~~y~~aL~~-------~p~~--------------------------------~~~~~~ra~ 44 (374)
.....+......|+.++|+.++.+|... +|.. .......+.
T Consensus 4 ~~i~~Ar~aL~~g~~~~A~~~L~~A~~~l~~~~~~~p~~~~~~~~~~~~~~~~iPI~~~~~v~d~~~~~~~~~~ai~~a~ 83 (155)
T PF10938_consen 4 RDIQKARLALFQGDTDEAKKLLEDAQGKLDAARADDPKLAKAEKILPPAKDDLIPIDAEVIVIDDYVPTPEKKAAIKTAN 83 (155)
T ss_dssp HHHHHHHHHHCTT-HHHHHHHHHHHHHHHTS-HHHHHCCB-TT-S--SSSS-EEEEEEEEEEE------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHhcChHhHhhhhccccCCCceEEEeeEEEEeeccCChHHHHHHHHHHH
Confidence 4567888999999999999999988776 1211 345566777
Q ss_pred HHHHccCHHHHHHHHHHHHHh-C------C-CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Q 017264 45 ASIKLQNFTEAVADANRAIEL-E------P-SMSKAYWRKATACMKLEEYETAKVALEKGAS 98 (374)
Q Consensus 45 ~~~~l~~~~~Al~~~~~al~l-~------p-~~~~a~~~lg~~~~~lg~~~eA~~~~~~a~~ 98 (374)
-+++.|+...|.+.+..+-.- . | .........+..+...|+|.+|...+..++.
T Consensus 84 ~~l~~g~~~~A~~~L~~~~~ei~~~~~~lPL~~~~~av~~A~~ll~~~k~~eA~~aL~~A~~ 145 (155)
T PF10938_consen 84 ELLKKGDKQAAREILKLAGSEIDITTALLPLAQTPAAVKQAAALLDEGKYYEANAALKQALD 145 (155)
T ss_dssp HHHHTT-HHHHHHHHHHTT-EEEEEEEEEEHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHhcccceeeeeeCCHHhhHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 788889998888866433211 0 1 1234556789999999999999999988763
No 462
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=54.57 E-value=1.3e+02 Score=29.06 Aligned_cols=64 Identities=20% Similarity=0.182 Sum_probs=47.5
Q ss_pred HHHHH--HHHHHHHHccCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Q 017264 36 AELFA--DRAQASIKLQNFTEAVADANRAIELEPS--MSKAYWRKATACMKLEEYETAKVALEKGASL 99 (374)
Q Consensus 36 ~~~~~--~ra~~~~~l~~~~~Al~~~~~al~l~p~--~~~a~~~lg~~~~~lg~~~eA~~~~~~a~~l 99 (374)
...|+ .+|+|..++|+..+|+..++...+-.|- ....+-++-.++..+.-|.+-...+.+.-.+
T Consensus 273 vl~YIKRRLAMCARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYADvqavLakYDdi 340 (556)
T KOG3807|consen 273 VLVYIKRRLAMCARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYADVQAVLAKYDDI 340 (556)
T ss_pred hhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 44444 4699999999999999999988887773 2356667777888888777766666665443
No 463
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=53.91 E-value=1e+02 Score=29.20 Aligned_cols=94 Identities=13% Similarity=0.047 Sum_probs=70.4
Q ss_pred HHHHHHHhccCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-----CCCH--HHH
Q 017264 7 KKAKEAFIDDYFELAYDLYSQAIEI------SPNSAELFADRAQASIKLQNFTEAVADANRAIELE-----PSMS--KAY 73 (374)
Q Consensus 7 ~~g~~~~~~~~y~~Al~~y~~aL~~------~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~-----p~~~--~a~ 73 (374)
.+...+++.|.|.+|+.+.+-.+.. .++-...+..-+.+|...++...+..-+..|--+. |-.. ..-
T Consensus 130 Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~vhllESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~lD 209 (421)
T COG5159 130 KLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITVHLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQLD 209 (421)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHHH
Confidence 4677899999999999998887765 34556788888999999998888877665554432 3332 333
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhcC
Q 017264 74 WRKATACMKLEEYETAKVALEKGASLA 100 (374)
Q Consensus 74 ~~lg~~~~~lg~~~eA~~~~~~a~~l~ 100 (374)
+.-|+.++.-.+|..|..+|-.+++-.
T Consensus 210 L~sGIlhcdd~dyktA~SYF~Ea~Egf 236 (421)
T COG5159 210 LLSGILHCDDRDYKTASSYFIEALEGF 236 (421)
T ss_pred HhccceeeccccchhHHHHHHHHHhcc
Confidence 445888899999999999998887654
No 464
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=53.77 E-value=58 Score=31.09 Aligned_cols=13 Identities=38% Similarity=0.434 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHh
Q 017264 19 ELAYDLYSQAIEI 31 (374)
Q Consensus 19 ~~Al~~y~~aL~~ 31 (374)
+.||++..+|+..
T Consensus 8 ~kaI~lv~kA~~e 20 (439)
T KOG0739|consen 8 QKAIDLVKKAIDE 20 (439)
T ss_pred HHHHHHHHHHhhh
Confidence 3455555555443
No 465
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=53.51 E-value=32 Score=35.71 Aligned_cols=32 Identities=13% Similarity=0.138 Sum_probs=27.8
Q ss_pred CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Q 017264 68 SMSKAYWRKATACMKLEEYETAKVALEKGASL 99 (374)
Q Consensus 68 ~~~~a~~~lg~~~~~lg~~~eA~~~~~~a~~l 99 (374)
+...-|-.||.+....+++..|.+||.++..+
T Consensus 664 ~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d~ 695 (794)
T KOG0276|consen 664 NSEVKWRQLGDAALSAGELPLASECFLRARDL 695 (794)
T ss_pred cchHHHHHHHHHHhhcccchhHHHHHHhhcch
Confidence 45567889999999999999999999998654
No 466
>PF15469 Sec5: Exocyst complex component Sec5
Probab=52.81 E-value=1.4e+02 Score=25.83 Aligned_cols=19 Identities=26% Similarity=0.368 Sum_probs=12.1
Q ss_pred HccCHHHHHHHHHHHHHhC
Q 017264 48 KLQNFTEAVADANRAIELE 66 (374)
Q Consensus 48 ~l~~~~~Al~~~~~al~l~ 66 (374)
+.|+|+.++.+|.+|-.+.
T Consensus 98 ~~~dy~~~i~dY~kak~l~ 116 (182)
T PF15469_consen 98 KKGDYDQAINDYKKAKSLF 116 (182)
T ss_pred HcCcHHHHHHHHHHHHHHH
Confidence 4566777777666666554
No 467
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=51.75 E-value=1.2e+02 Score=24.20 Aligned_cols=74 Identities=12% Similarity=0.023 Sum_probs=47.9
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Q 017264 39 FADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERI 117 (374)
Q Consensus 39 ~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~a~~l~p~~~~~~~~~~~~~~~l 117 (374)
+..+|.+-...+.+++|...++-.-..+...-.+.+.+...+.+.|+|++|+ . +.+....+.+.-|.+-|.-++
T Consensus 9 LAElAL~atG~HcH~EA~tIa~wL~~~~~~~E~v~lIr~~sLmNrG~Yq~AL---l--~~~~~~~pdL~p~~AL~a~kl 82 (116)
T PF09477_consen 9 LAELALMATGHHCHQEANTIADWLEQEGEMEEVVALIRLSSLMNRGDYQEAL---L--LPQCHCYPDLEPWAALCAWKL 82 (116)
T ss_dssp HHHHHHHHHTTT-HHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHTT-HHHHH---H--HHTTS--GGGHHHHHHHHHHC
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhhHHHHHHH---H--hcccCCCccHHHHHHHHHHhh
Confidence 4455556666778889888777666665545556778888999999999993 2 223444566777777766554
No 468
>PF08238 Sel1: Sel1 repeat; InterPro: IPR006597 Sel1-like repeats are tetratricopeptide repeat sequences originally identified in a Caenorhabditis elegans receptor molecule which is a key negative regulator of the Notch pathway []. Mammalian homologues have since been identified although these mainly pancreatic proteins have yet to have a function assigned.; PDB: 2XM6_A 3RJV_A 1OUV_A 1KLX_A.
Probab=51.39 E-value=35 Score=20.72 Aligned_cols=29 Identities=24% Similarity=0.178 Sum_probs=15.1
Q ss_pred HHHHHHH--HHHHHhc-----CHHHHHHHHHHHHhc
Q 017264 71 KAYWRKA--TACMKLE-----EYETAKVALEKGASL 99 (374)
Q Consensus 71 ~a~~~lg--~~~~~lg-----~~~eA~~~~~~a~~l 99 (374)
.+.+++| .+|..-. ++.+|+.+|+++.+.
T Consensus 2 ~A~~~lg~~~~~~~g~~g~~~d~~~A~~~~~~Aa~~ 37 (39)
T PF08238_consen 2 EAQYNLGMYYMYYNGKGGVPKDYEKAFKWYEKAAEQ 37 (39)
T ss_dssp HHHHHHHHHHHHHHTSTSSCHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHhhhhccCCccccccchHHHHHHHHHc
Confidence 4566666 3333322 356666666665543
No 469
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=49.81 E-value=3.7e+02 Score=29.15 Aligned_cols=18 Identities=11% Similarity=0.160 Sum_probs=10.5
Q ss_pred hccCHHHHHHHHHHHHHh
Q 017264 14 IDDYFELAYDLYSQAIEI 31 (374)
Q Consensus 14 ~~~~y~~Al~~y~~aL~~ 31 (374)
..++|+.|-..|+-....
T Consensus 377 ir~emDd~~~~f~lL~n~ 394 (1102)
T KOG1924|consen 377 IRAEMDDANEVFELLANT 394 (1102)
T ss_pred hhhhhccHHHHHHHHHHh
Confidence 345566676666654444
No 470
>KOG1497 consensus COP9 signalosome, subunit CSN4 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=48.98 E-value=1.6e+02 Score=28.37 Aligned_cols=81 Identities=17% Similarity=0.154 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC--------HHHHHHHHHHHHHhcCHHHHHHHHHHH--HhcCCCChh
Q 017264 36 AELFADRAQASIKLQNFTEAVADANRAIELEPSM--------SKAYWRKATACMKLEEYETAKVALEKG--ASLAPGDSR 105 (374)
Q Consensus 36 ~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~--------~~a~~~lg~~~~~lg~~~eA~~~~~~a--~~l~p~~~~ 105 (374)
...+..+|..|.+-+++..|.+.+ .++.++.+. ...++++|.+|...++..+|..+..++ +..+..|..
T Consensus 103 ~~irl~LAsiYE~Eq~~~~aaq~L-~~I~~~tg~~~~d~~~kl~l~iriarlyLe~~d~veae~~inRaSil~a~~~Ne~ 181 (399)
T KOG1497|consen 103 ASIRLHLASIYEKEQNWRDAAQVL-VGIPLDTGQKAYDVEQKLLLCIRIARLYLEDDDKVEAEAYINRASILQAESSNEQ 181 (399)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHH-hccCcccchhhhhhHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhcccCHH
Q ss_pred HHHHHHHHHHHH
Q 017264 106 FTNLIKECEERI 117 (374)
Q Consensus 106 ~~~~~~~~~~~l 117 (374)
+...+.-|+++.
T Consensus 182 Lqie~kvc~ARv 193 (399)
T KOG1497|consen 182 LQIEYKVCYARV 193 (399)
T ss_pred HHHHHHHHHHHH
No 471
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]
Probab=48.68 E-value=70 Score=28.29 Aligned_cols=86 Identities=10% Similarity=0.136 Sum_probs=57.5
Q ss_pred ccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-----ccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh-----c
Q 017264 15 DDYFELAYDLYSQAIEISPNSAELFADRAQASIK-----LQNFTEAVADANRAIELEPSMSKAYWRKATACMKL-----E 84 (374)
Q Consensus 15 ~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~-----l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~l-----g 84 (374)
+++|++|...|..-...+.. +...+.+|.-++. .+++..|++.+..++. .+++.+...+|.++..- +
T Consensus 48 ~knF~~A~kv~K~nCden~y-~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~--~n~~~aC~~~gLl~~~g~~~r~~ 124 (248)
T KOG4014|consen 48 QKNFQAAVKVFKKNCDENSY-PKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACD--ANIPQACRYLGLLHWNGEKDRKA 124 (248)
T ss_pred HHHHHHHHHHHHhcccccCC-cHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhc--cCCHHHHhhhhhhhccCcCCccC
Confidence 45566666666554444433 4555666654432 2578889999988887 45788899999888652 2
Q ss_pred C--HHHHHHHHHHHHhcCCCC
Q 017264 85 E--YETAKVALEKGASLAPGD 103 (374)
Q Consensus 85 ~--~~eA~~~~~~a~~l~p~~ 103 (374)
+ ...|..+++++-.+.-..
T Consensus 125 dpd~~Ka~~y~traCdl~~~~ 145 (248)
T KOG4014|consen 125 DPDSEKAERYMTRACDLEDGE 145 (248)
T ss_pred CCCcHHHHHHHHHhccCCCch
Confidence 2 568888999887776543
No 472
>smart00671 SEL1 Sel1-like repeats. These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
Probab=48.57 E-value=40 Score=19.93 Aligned_cols=26 Identities=19% Similarity=0.065 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHh----cCHHHHHHHHHHHH
Q 017264 72 AYWRKATACMKL----EEYETAKVALEKGA 97 (374)
Q Consensus 72 a~~~lg~~~~~l----g~~~eA~~~~~~a~ 97 (374)
+++.+|.+|..- .++..|+.+|+++.
T Consensus 3 a~~~lg~~~~~G~g~~~d~~~A~~~~~~Aa 32 (36)
T smart00671 3 AQYNLGQMYEYGLGVKKDLEKALEYYKKAA 32 (36)
T ss_pred HHHHHHHHHHcCCCCCcCHHHHHHHHHHHH
Confidence 445555554431 24555555555544
No 473
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=48.50 E-value=1.5e+02 Score=24.12 Aligned_cols=57 Identities=11% Similarity=-0.017 Sum_probs=42.4
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 017264 39 FADRAQASIKLQNFTEAVADANRAIEL--EPSMSKAYWRKATACMKLEEYETAKVALEKGA 97 (374)
Q Consensus 39 ~~~ra~~~~~l~~~~~Al~~~~~al~l--~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~a~ 97 (374)
|+.+-..|..+-+ ++...|..+... .-..+..|...|..+...|++.+|...|+.++
T Consensus 68 ylkiWi~ya~~~~--~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~Gi 126 (126)
T PF08311_consen 68 YLKIWIKYADLSS--DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQLGI 126 (126)
T ss_dssp HHHHHHHHHTTBS--HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcc--CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHhhC
Confidence 3444444444443 778888777764 46788999999999999999999999999874
No 474
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=48.42 E-value=45 Score=27.14 Aligned_cols=29 Identities=14% Similarity=0.321 Sum_probs=16.9
Q ss_pred HHHHHHHHhccCHHHHHHHHHHHHHhCCC
Q 017264 6 EKKAKEAFIDDYFELAYDLYSQAIEISPN 34 (374)
Q Consensus 6 ~~~g~~~~~~~~y~~Al~~y~~aL~~~p~ 34 (374)
...|..++..|++.+|+.+|-.||...|.
T Consensus 67 V~lGE~L~~~G~~~~aa~hf~nAl~V~~q 95 (121)
T PF02064_consen 67 VQLGEQLLAQGDYEEAAEHFYNALKVCPQ 95 (121)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHTSSS
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHhCCC
Confidence 44566666666666666666666666555
No 475
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=48.38 E-value=3.1e+02 Score=27.84 Aligned_cols=53 Identities=15% Similarity=0.139 Sum_probs=25.3
Q ss_pred HHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 017264 11 EAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAI 63 (374)
Q Consensus 11 ~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al 63 (374)
.++..+++..|-..|.-.|...|+...+....-..++..++-..|...|+.++
T Consensus 441 E~~~~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi~inde~naraLFetsv 493 (660)
T COG5107 441 EYYATGDRATAYNIFELGLLKFPDSTLYKEKYLLFLIRINDEENARALFETSV 493 (660)
T ss_pred HHHhcCCcchHHHHHHHHHHhCCCchHHHHHHHHHHHHhCcHHHHHHHHHHhH
Confidence 34444555555555555555555544433333344444455555555555444
No 476
>PF13041 PPR_2: PPR repeat family
Probab=48.36 E-value=48 Score=21.66 Aligned_cols=31 Identities=13% Similarity=0.033 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Q 017264 36 AELFADRAQASIKLQNFTEAVADANRAIELE 66 (374)
Q Consensus 36 ~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~ 66 (374)
...|..+-.+|.+.|++++|++.|++..+.+
T Consensus 3 ~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g 33 (50)
T PF13041_consen 3 VVTYNTLISGYCKAGKFEEALKLFKEMKKRG 33 (50)
T ss_pred hHHHHHHHHHHHHCcCHHHHHHHHHHHHHcC
Confidence 3456666677777777777777777777654
No 477
>PF14098 SSPI: Small, acid-soluble spore protein I
Probab=48.33 E-value=18 Score=25.87 Aligned_cols=26 Identities=23% Similarity=0.525 Sum_probs=23.0
Q ss_pred HHHHHHHHHhcCCCHHHHHHhhhhhh
Q 017264 315 ALNKFFQEIYADADEDTRRAMKKSFV 340 (374)
Q Consensus 315 ~~~~~f~~iY~~~d~d~kram~Ks~~ 340 (374)
+|-=||..||.++|++.|..|+.+-.
T Consensus 37 GLGVlFE~~W~~~~~~ek~~m~~~l~ 62 (65)
T PF14098_consen 37 GLGVLFEVIWKNSDESEKQEMVNTLE 62 (65)
T ss_pred chHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 47889999999999999999997654
No 478
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=47.91 E-value=40 Score=24.01 Aligned_cols=24 Identities=21% Similarity=0.206 Sum_probs=12.6
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHH
Q 017264 74 WRKATACMKLEEYETAKVALEKGA 97 (374)
Q Consensus 74 ~~lg~~~~~lg~~~eA~~~~~~a~ 97 (374)
...|+-+-..|+|.+|+.+|..++
T Consensus 9 ~~~Av~~D~~g~~~~A~~~Y~~ai 32 (69)
T PF04212_consen 9 IKKAVEADEAGNYEEALELYKEAI 32 (69)
T ss_dssp HHHHHHHHHTTSHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHH
Confidence 344444445556655555555544
No 479
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=47.51 E-value=38 Score=25.13 Aligned_cols=26 Identities=19% Similarity=0.148 Sum_probs=13.0
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHh
Q 017264 73 YWRKATACMKLEEYETAKVALEKGAS 98 (374)
Q Consensus 73 ~~~lg~~~~~lg~~~eA~~~~~~a~~ 98 (374)
+.++|+-+=..|+|.+|+.+|..+++
T Consensus 9 ~a~~Ave~D~~g~y~eA~~~Y~~aie 34 (76)
T cd02681 9 FARLAVQRDQEGRYSEAVFYYKEAAQ 34 (76)
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 33444444455555555555555443
No 480
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=47.24 E-value=2.5e+02 Score=27.12 Aligned_cols=96 Identities=15% Similarity=0.054 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH---HHH
Q 017264 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNS------AELFADRAQASIKLQNFTEAVADANRAIELEPSMS---KAY 73 (374)
Q Consensus 3 ~~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~------~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~---~a~ 73 (374)
+.+.+.|..+.+-||-+.|++.+.+.++..-.- .-....+|..|....-..+.++-+...++.+.++- ..-
T Consensus 105 ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRlK 184 (393)
T KOG0687|consen 105 EAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRLK 184 (393)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhHH
Confidence 355667777777777777777776655542211 22334455555544444555555555555554321 111
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHh
Q 017264 74 WRKATACMKLEEYETAKVALEKGAS 98 (374)
Q Consensus 74 ~~lg~~~~~lg~~~eA~~~~~~a~~ 98 (374)
-..|..+....+|.+|...|-.++.
T Consensus 185 vY~Gly~msvR~Fk~Aa~Lfld~vs 209 (393)
T KOG0687|consen 185 VYQGLYCMSVRNFKEAADLFLDSVS 209 (393)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHcc
Confidence 2235555666677777666665543
No 481
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=47.13 E-value=97 Score=29.99 Aligned_cols=72 Identities=17% Similarity=0.120 Sum_probs=50.2
Q ss_pred HHHHHHHhccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 017264 7 KKAKEAFIDDYFELAYDLYSQAIEI--SPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKAT 78 (374)
Q Consensus 7 ~~g~~~~~~~~y~~Al~~y~~aL~~--~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~ 78 (374)
|++..+-+..-...++....-.+.. -.....++..||..+.++|+..+|...|++|+.+.++..+..|.+..
T Consensus 334 NRAVAla~~~Gp~agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~aer~~l~~r 407 (415)
T COG4941 334 NRAVALAMREGPAAGLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIALARNAAERAFLRQR 407 (415)
T ss_pred hHHHHHHHhhhHHhHHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCChHHHHHHHHH
Confidence 4455555555556666666544433 12224567789999999999999999999999999988765554443
No 482
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=46.90 E-value=1e+02 Score=31.50 Aligned_cols=80 Identities=13% Similarity=0.019 Sum_probs=52.3
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Q 017264 21 AYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEP--SMSKAYWRKATACMKLEEYETAKVALEKGAS 98 (374)
Q Consensus 21 Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p--~~~~a~~~lg~~~~~lg~~~eA~~~~~~a~~ 98 (374)
..+.+-......|.++..++..|..+..+|+.+.|+..++..+...- -..-.+|-+|.++..+.+|..|...+.....
T Consensus 252 ~~~~Ll~~~~~~p~ga~wll~~ar~l~~~g~~eaa~~~~~~~v~~~~kQ~~~l~~fE~aw~~v~~~~~~~aad~~~~L~d 331 (546)
T KOG3783|consen 252 CEKALKKYRKRYPKGALWLLMEARILSIKGNSEAAIDMESLSIPIRMKQVKSLMVFERAWLSVGQHQYSRAADSFDLLRD 331 (546)
T ss_pred HHHHhHHHHHhCCCCccHHHHHHHHHHHcccHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHh
Confidence 33444444556788888888888888888887777777776665111 1233566677777777777777777776554
Q ss_pred cC
Q 017264 99 LA 100 (374)
Q Consensus 99 l~ 100 (374)
..
T Consensus 332 es 333 (546)
T KOG3783|consen 332 ES 333 (546)
T ss_pred hh
Confidence 43
No 483
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=46.78 E-value=35 Score=19.28 Aligned_cols=23 Identities=17% Similarity=0.145 Sum_probs=11.5
Q ss_pred HHHHHHHHccCHHHHHHHHHHHH
Q 017264 41 DRAQASIKLQNFTEAVADANRAI 63 (374)
Q Consensus 41 ~ra~~~~~l~~~~~Al~~~~~al 63 (374)
.+-.+|.+.|++++|.+.+.+..
T Consensus 5 ~li~~~~~~~~~~~a~~~~~~M~ 27 (31)
T PF01535_consen 5 SLISGYCKMGQFEEALEVFDEMR 27 (31)
T ss_pred HHHHHHHccchHHHHHHHHHHHh
Confidence 34445555555555555554443
No 484
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=46.28 E-value=49 Score=18.95 Aligned_cols=25 Identities=16% Similarity=0.064 Sum_probs=13.9
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHH
Q 017264 40 ADRAQASIKLQNFTEAVADANRAIE 64 (374)
Q Consensus 40 ~~ra~~~~~l~~~~~Al~~~~~al~ 64 (374)
..+-.+|.+.|++++|++.|.....
T Consensus 4 n~li~~~~~~~~~~~a~~~~~~M~~ 28 (35)
T TIGR00756 4 NTLIDGLCKAGRVEEALELFKEMLE 28 (35)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3444555566666666666655443
No 485
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=46.06 E-value=1.8e+02 Score=24.44 Aligned_cols=34 Identities=21% Similarity=0.111 Sum_probs=26.5
Q ss_pred CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Q 017264 66 EPSMSKAYWRKATACMKLEEYETAKVALEKGASL 99 (374)
Q Consensus 66 ~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~a~~l 99 (374)
+.-.+..++.+|.+|..+|...+|-..+.+|-+-
T Consensus 116 ~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACek 149 (161)
T PF09205_consen 116 EEINPEFLVKIANAYKKLGNTREANELLKEACEK 149 (161)
T ss_dssp --S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 3457889999999999999999999999887643
No 486
>PF13226 DUF4034: Domain of unknown function (DUF4034)
Probab=45.92 E-value=2.6e+02 Score=26.26 Aligned_cols=112 Identities=13% Similarity=0.059 Sum_probs=71.6
Q ss_pred HHHHHHhccCHHHHHHHHHHHHHhCCC--CHHH-HHHHHHH--HHHccCHH----HHHHHHHHHHHhCCCCHHHHHHHHH
Q 017264 8 KAKEAFIDDYFELAYDLYSQAIEISPN--SAEL-FADRAQA--SIKLQNFT----EAVADANRAIELEPSMSKAYWRKAT 78 (374)
Q Consensus 8 ~g~~~~~~~~y~~Al~~y~~aL~~~p~--~~~~-~~~ra~~--~~~l~~~~----~Al~~~~~al~l~p~~~~a~~~lg~ 78 (374)
....++..++|++--..|.+....... ..+. |+..... ++.+.... ..++.++.=++..|+...+++.+|.
T Consensus 6 ~ir~LL~~~~f~eLd~~l~~~~~~~~~s~~~e~~Y~~~~~~~~l~D~~~~~~~~~~~~~~LkaWv~a~P~Sy~A~La~g~ 85 (277)
T PF13226_consen 6 DIRELLQARDFAELDALLARLLQAWLQSRDGEQRYFRAWMSSTLFDMDSVVDAWQARLAVLKAWVAACPKSYHAHLAMGM 85 (277)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhhhhccCccchHHHHHhhccccCcchhhhHHHhHHHHHHHHHHHCCCChHHHHHHHH
Confidence 567899999999999999888765332 1221 2222111 22222222 2344444455678999888888888
Q ss_pred HHHHhc----------------------CHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHh
Q 017264 79 ACMKLE----------------------EYETAKVALEKGASLAPGDSRFTNLIKECEERIAE 119 (374)
Q Consensus 79 ~~~~lg----------------------~~~eA~~~~~~a~~l~p~~~~~~~~~~~~~~~l~~ 119 (374)
.++... -.+.|...|.+++.++|........+-.+-..++.
T Consensus 86 ~~~~~Aw~~RG~~~A~~V~~~~W~~~~~~~d~A~~~ll~A~~l~pr~~~A~~~m~~~s~~fge 148 (277)
T PF13226_consen 86 YWVHRAWDIRGSGYASTVTEAQWLGAHQACDQAVAALLKAIELSPRPVAAAIGMINISAYFGE 148 (277)
T ss_pred HHHHHHHHHHccchhcccCHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhcCC
Confidence 877522 13678888999999999887766666555554443
No 487
>KOG4563 consensus Cell cycle-regulated histone H1-binding protein [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=45.74 E-value=37 Score=32.96 Aligned_cols=59 Identities=15% Similarity=0.165 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCC--------CCHHHHHHHHHHHHHhcCHHHHHHHHHH
Q 017264 37 ELFADRAQASIKLQNFTEAVADANRAIELEP--------SMSKAYWRKATACMKLEEYETAKVALEK 95 (374)
Q Consensus 37 ~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p--------~~~~a~~~lg~~~~~lg~~~eA~~~~~~ 95 (374)
.-++..|+-++.+++|..|...|..|..+.. .+..++|.+|.+++.++++..++-++..
T Consensus 42 e~lv~~G~~~~~~~d~~~Avda~s~A~~l~~ei~Ge~~~e~~eal~~YGkslLela~~e~~VL~nal 108 (400)
T KOG4563|consen 42 EELVQAGRRALCNNDIDKAVDALSEATELSDEIYGEKHLETFEALFLYGKSLLELAKEESQVLGNAL 108 (400)
T ss_pred HHHHHhhhHHHhcccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 3456677778889999999999999987753 4678999999999999999988877654
No 488
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=45.25 E-value=65 Score=31.29 Aligned_cols=46 Identities=20% Similarity=0.136 Sum_probs=41.3
Q ss_pred ccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHH
Q 017264 15 DDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADAN 60 (374)
Q Consensus 15 ~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~ 60 (374)
.+..-+|+-++..++..+|.|..+.+.+..+|..+|-...|...|.
T Consensus 196 ~~~l~~Ai~lLE~~l~~s~~n~~~~LlLvrlY~~LG~~~~A~~~~~ 241 (365)
T PF09797_consen 196 SEYLLQAIALLEHALKKSPHNYQLKLLLVRLYSLLGAGSLALEHYE 241 (365)
T ss_pred HHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 4446789999999999999999999999999999999999988875
No 489
>TIGR03092 SASP_sspI small, acid-soluble spore protein I. This protein family is restricted to a subset of endospore-forming bacteria such as Bacillus subtilis, all of which are in the Firmicutes (low-GC Gram-positive) lineage. It is a minor SASP (small, acid-soluble spore protein) designated SspI. The gene in Bacillus subtilis previously was designated ysfA.
Probab=45.01 E-value=20 Score=25.58 Aligned_cols=25 Identities=24% Similarity=0.538 Sum_probs=22.6
Q ss_pred HHHHHHHHHhcCCCHHHHHHhhhhh
Q 017264 315 ALNKFFQEIYADADEDTRRAMKKSF 339 (374)
Q Consensus 315 ~~~~~f~~iY~~~d~d~kram~Ks~ 339 (374)
+|-=||..+|.++|+..|..|+.+-
T Consensus 36 GLGVlFE~~W~~~~~~ek~~m~~~l 60 (65)
T TIGR03092 36 GLGVLFEAIWKHANEQEKDEMLETL 60 (65)
T ss_pred ccHHHHHHHHHhcCHHHHHHHHHHH
Confidence 4788999999999999999999764
No 490
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=44.13 E-value=62 Score=32.56 Aligned_cols=70 Identities=17% Similarity=0.179 Sum_probs=56.2
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 017264 25 YSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGA 97 (374)
Q Consensus 25 y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~a~ 97 (374)
|+++|..-+-.++.|+....-+...++-+.|+....+++...|. .+++++.+|....+-+.-.-||+++.
T Consensus 291 ~~q~~~y~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~sps---L~~~lse~yel~nd~e~v~~~fdk~~ 360 (660)
T COG5107 291 HNQILDYFYYAEEVWFDYSEYLIGISDKQKALKTVERGIEMSPS---LTMFLSEYYELVNDEEAVYGCFDKCT 360 (660)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccCCCc---hheeHHHHHhhcccHHHHhhhHHHHH
Confidence 67888888888999998888888889999999988888877776 67888888777777666666777664
No 491
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=44.00 E-value=3.9e+02 Score=27.74 Aligned_cols=53 Identities=8% Similarity=-0.054 Sum_probs=40.8
Q ss_pred HHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Q 017264 47 IKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASL 99 (374)
Q Consensus 47 ~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~a~~l 99 (374)
+-.++..-|...|+..+...++.+..-+....-+.++++-..|...|++++.-
T Consensus 412 ~cskD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s 464 (656)
T KOG1914|consen 412 YCSKDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTS 464 (656)
T ss_pred HhcCChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhc
Confidence 34577777888888888888888777777777778888888888888887765
No 492
>KOG4459 consensus Membrane-associated proteoglycan Leprecan [Function unknown]
Probab=42.71 E-value=54 Score=32.77 Aligned_cols=116 Identities=16% Similarity=0.140 Sum_probs=73.1
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHH--HHc------------------cCHHHHHHHHHH
Q 017264 4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPN--SAELFADRAQAS--IKL------------------QNFTEAVADANR 61 (374)
Q Consensus 4 ~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~--~~~~~~~ra~~~--~~l------------------~~~~~Al~~~~~ 61 (374)
..++.|...+..+++..++.++.+||+..-. ...+. -+..|- ..+ |.+-+-.....+
T Consensus 33 ~ay~~gl~~y~~~~w~~~v~~le~ALr~~~~~~~~~~~-Cr~~C~g~~~~~e~~~~~~s~~~~~~a~fg~~le~a~Cl~r 111 (471)
T KOG4459|consen 33 LAYSHGLESYEEENWPEAVRFLERALRLFRALRDSEAF-CRTNCEGPAQLPEPEAGSASFGGLYLAIFGHLLERAACLRR 111 (471)
T ss_pred HHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHhhhHHH-HHhhccCcccCCCchhcccccchhHHHHHHHHHHHHHHHHH
Confidence 4568899999999999999999999986211 00111 111221 011 111111112222
Q ss_pred HHHh---CCC----------CHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhh
Q 017264 62 AIEL---EPS----------MSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE 120 (374)
Q Consensus 62 al~l---~p~----------~~~a~~~lg~~~~~lg~~~eA~~~~~~a~~l~p~~~~~~~~~~~~~~~l~~~ 120 (374)
+..- .+. ....|-.|-.+|++.|++..|+++-...+-.+|++..++..+..-+..+...
T Consensus 112 Ckg~~~~~~~~~~~~~~df~~r~py~YL~~ay~k~~~l~kAv~aa~tflv~~Pdde~ik~~ldyYq~~l~~s 183 (471)
T KOG4459|consen 112 CKGELAARHGSDRSPYLDFRPRLPYQYLQFAYFKVGELEKAVAAAHTFLVANPDDEDIKQNLDYYQTMLGVS 183 (471)
T ss_pred HhcccccCCCcccchhhhhccchHHHHHHHHHHHhhhHHHHHHhcceeeecCCcHHHHHHHHHHHHhccCCC
Confidence 2211 111 1246777899999999999999999989999999998888887776555443
No 493
>KOG3591 consensus Alpha crystallins [Posttranslational modification, protein turnover, chaperones]
Probab=42.51 E-value=1.6e+02 Score=25.46 Aligned_cols=72 Identities=13% Similarity=0.110 Sum_probs=54.7
Q ss_pred cCCeEEEEEEeCCCCCCceEEEEeeeEEEEEEEcCC-----C---CeeeeccccccccccCceEEEEcCc-EEEEEEeec
Q 017264 181 KPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPG-----E---EAYHFQPRLFGKIIPAKCRYEVLST-KVEIRLAKA 251 (374)
Q Consensus 181 t~~~V~i~i~~k~~~~~~v~v~~~~~~l~v~~~~~~-----~---~~y~~~~~L~~~I~p~~s~~~v~~~-kiei~L~K~ 251 (374)
+.+...|.+-+.+..+++++|...++.|.|..+-.. | .+|.=...|-.-++|+.-+-.+.++ .+.|.-.|.
T Consensus 70 ~~~~F~V~lDV~~F~PeEl~Vk~~~~~l~V~gkHeer~d~~G~v~R~F~R~y~LP~~vdp~~V~S~LS~dGvLtI~ap~~ 149 (173)
T KOG3591|consen 70 DKDKFEVNLDVHQFKPEELKVKTDDNTLEVEGKHEEKEDEHGYVSRSFVRKYLLPEDVDPTSVTSTLSSDGVLTIEAPKP 149 (173)
T ss_pred CCCcEEEEEEcccCcccceEEEeCCCEEEEEeeeccccCCCCeEEEEEEEEecCCCCCChhheEEeeCCCceEEEEccCC
Confidence 456677888888889999999999999998875431 1 1244456799999999988888776 677776665
Q ss_pred C
Q 017264 252 E 252 (374)
Q Consensus 252 ~ 252 (374)
.
T Consensus 150 ~ 150 (173)
T KOG3591|consen 150 P 150 (173)
T ss_pred C
Confidence 4
No 494
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=42.48 E-value=1.4e+02 Score=23.57 Aligned_cols=44 Identities=14% Similarity=0.049 Sum_probs=37.8
Q ss_pred CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChhHHHHHH
Q 017264 68 SMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIK 111 (374)
Q Consensus 68 ~~~~a~~~lg~~~~~lg~~~eA~~~~~~a~~l~p~~~~~~~~~~ 111 (374)
--+-+|-.+|.+|.+.|+-+.|...|+.-..+.|....+...+-
T Consensus 70 vpPG~HAhLGlLys~~G~~e~a~~eFetEKalFPES~~fmDFLm 113 (121)
T COG4259 70 VPPGYHAHLGLLYSNSGKDEQAVREFETEKALFPESGVFMDFLM 113 (121)
T ss_pred CCCcHHHHHHHHHhhcCChHHHHHHHHHhhhhCccchhHHHHHH
Confidence 35678889999999999999999999999999998877666553
No 495
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=42.33 E-value=1.3e+02 Score=21.84 Aligned_cols=20 Identities=20% Similarity=0.114 Sum_probs=8.5
Q ss_pred HHHHHHhcCHHHHHHHHHHH
Q 017264 77 ATACMKLEEYETAKVALEKG 96 (374)
Q Consensus 77 g~~~~~lg~~~eA~~~~~~a 96 (374)
|+-.-..|+|++|+.+|..+
T Consensus 13 Av~~D~~g~y~eA~~~Y~~a 32 (75)
T cd02678 13 AIEEDNAGNYEEALRLYQHA 32 (75)
T ss_pred HHHHHHcCCHHHHHHHHHHH
Confidence 33334444444444444433
No 496
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=42.24 E-value=48 Score=24.80 Aligned_cols=16 Identities=25% Similarity=0.588 Sum_probs=8.8
Q ss_pred CHHHHHHHHHHHHHhC
Q 017264 17 YFELAYDLYSQAIEIS 32 (374)
Q Consensus 17 ~y~~Al~~y~~aL~~~ 32 (374)
.|+.|....++||..+
T Consensus 4 ~~~~A~~~I~kaL~~d 19 (79)
T cd02679 4 YYKQAFEEISKALRAD 19 (79)
T ss_pred HHHHHHHHHHHHhhhh
Confidence 4555555555555544
No 497
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=42.23 E-value=68 Score=26.10 Aligned_cols=39 Identities=10% Similarity=0.209 Sum_probs=31.5
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhcCCCChhHHHHHHH
Q 017264 74 WRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKE 112 (374)
Q Consensus 74 ~~lg~~~~~lg~~~eA~~~~~~a~~l~p~~~~~~~~~~~ 112 (374)
..+|..+...|++.+|..+|-+|+...|.-..+...+.+
T Consensus 67 V~lGE~L~~~G~~~~aa~hf~nAl~V~~qP~~LL~i~q~ 105 (121)
T PF02064_consen 67 VQLGEQLLAQGDYEEAAEHFYNALKVCPQPAELLQIYQK 105 (121)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHTSSSHHHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 458999999999999999999999999987666555544
No 498
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=41.70 E-value=1.3e+02 Score=31.42 Aligned_cols=83 Identities=19% Similarity=0.127 Sum_probs=52.2
Q ss_pred HHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC--------CCHHHHHHHH---
Q 017264 9 AKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEP--------SMSKAYWRKA--- 77 (374)
Q Consensus 9 g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p--------~~~~a~~~lg--- 77 (374)
-..+.+.|+++.|.++..+ .++..-|..+|.+.+..+++..|.+++.+|-.+.. ++.+.+..+|
T Consensus 644 Felal~lgrl~iA~~la~e-----~~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d~~~LlLl~t~~g~~~~l~~la~~~ 718 (794)
T KOG0276|consen 644 FELALKLGRLDIAFDLAVE-----ANSEVKWRQLGDAALSAGELPLASECFLRARDLGSLLLLYTSSGNAEGLAVLASLA 718 (794)
T ss_pred hhhhhhcCcHHHHHHHHHh-----hcchHHHHHHHHHHhhcccchhHHHHHHhhcchhhhhhhhhhcCChhHHHHHHHHH
Confidence 3444555556555554433 35566788899999899999999888887754432 3333333332
Q ss_pred ----------HHHHHhcCHHHHHHHHHHH
Q 017264 78 ----------TACMKLEEYETAKVALEKG 96 (374)
Q Consensus 78 ----------~~~~~lg~~~eA~~~~~~a 96 (374)
.+|+.+|++++.++.+..-
T Consensus 719 ~~~g~~N~AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 719 KKQGKNNLAFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred HhhcccchHHHHHHHcCCHHHHHHHHHhc
Confidence 4566777777777666554
No 499
>PF01239 PPTA: Protein prenyltransferase alpha subunit repeat; InterPro: IPR002088 Protein prenylation is the posttranslational attachment of either a farnesyl group or a geranylgeranyl group via a thioether linkage (-C-S-C-) to a cysteine at or near the carboxyl terminus of the protein. Farnesyl and geranylgeranyl groups are polyisoprenes, unsaturated hydrocarbons with a multiple of five carbons; the chain is 15 carbons long in the farnesyl moiety and 20 carbons long in the geranylgeranyl moiety. There are three different protein prenyltransferases in humans: farnesyltransferase (FT) and geranylgeranyltransferase 1 (GGT1) share the same motif (the CaaX box) around the cysteine in their substrates, and are thus called CaaX prenyltransferases, whereas geranylgeranyltransferase 2 (GGT2, also called Rab geranylgeranyltransferase) recognises a different motif and is thus called a non-CaaX prenyltransferase. Protein prenyltransferases are currently known only in eukaryotes, but they are widespread, being found in vertebrates, insects, nematodes, plants, fungi and protozoa, including several parasites. Each protein consists of two subunits, alpha and beta; the alpha subunit of FT and GGT1 is encoded by the same gene, FNTA. The alpha subunit is thought to participate in a stable complex with the isoprenyl substrate; the beta subunit binds the peptide substrate. In the alpha subunits of both types of protein prenyltransferases, seven tetratricopeptide repeats are formed by pairs of helices that are stabilised by conserved intercalating residues. The alpha subunits of GGT2 in mammals and plants also have an immunoglobulin-like domain between the fifth and sixth tetratricopeptide repeat, as well as leucine-rich repeats at the carboxyl terminus. The functions of these additional domains in GGT2 are as yet undefined, but they are apparently not directly involved in the interaction with substrates and Rab escort proteins. The tetratricopeptide repeats of the alpha subunit form a right-handed superhelix, which embraces the (alpha-alpha)6 barrel of the beta subunit []. ; GO: 0008318 protein prenyltransferase activity, 0018342 protein prenylation; PDB: 1S63_A 1LD7_A 1LD8_A 2H6G_A 1SA4_A 1MZC_A 1TN6_A 2F0Y_A 2H6H_A 2H6F_A ....
Probab=41.46 E-value=73 Score=18.61 Aligned_cols=28 Identities=14% Similarity=0.189 Sum_probs=17.4
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 017264 21 AYDLYSQAIEISPNSAELFADRAQASIK 48 (374)
Q Consensus 21 Al~~y~~aL~~~p~~~~~~~~ra~~~~~ 48 (374)
.+++...+|..+|.+..++..|-.++.+
T Consensus 2 El~~~~~~l~~~pknys~W~yR~~ll~~ 29 (31)
T PF01239_consen 2 ELEFTKKALEKDPKNYSAWNYRRWLLKQ 29 (31)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCcccccHHHHHHHHHHH
Confidence 3455666667777776666666555543
No 500
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=41.41 E-value=95 Score=30.07 Aligned_cols=108 Identities=13% Similarity=0.087 Sum_probs=74.4
Q ss_pred HHHHHHHhccCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHccCHHHH--HHHHHHHHHhCCCCHHHHHHHHH
Q 017264 7 KKAKEAFIDDYFELAYDLYSQAIEISP------NSAELFADRAQASIKLQNFTEA--VADANRAIELEPSMSKAYWRKAT 78 (374)
Q Consensus 7 ~~g~~~~~~~~y~~Al~~y~~aL~~~p------~~~~~~~~ra~~~~~l~~~~~A--l~~~~~al~l~p~~~~a~~~lg~ 78 (374)
..|-.+...+||..|-.+|=+|++-.. .....+-++-.|-..++..++- +-....+++.+....++....|.
T Consensus 214 qSGIlha~ekDykTafSYFyEAfEgf~s~~~~v~A~~sLKYMlLcKIMln~~ddv~~lls~K~~l~y~g~~i~AmkavAe 293 (411)
T KOG1463|consen 214 QSGILHAAEKDYKTAFSYFYEAFEGFDSLDDDVKALTSLKYMLLCKIMLNLPDDVAALLSAKLALKYAGRDIDAMKAVAE 293 (411)
T ss_pred hccceeecccccchHHHHHHHHHccccccCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHhhHHHHhccCcchHHHHHHHH
Confidence 456667777999999999999888521 1123444455566667776654 44556778877788888888888
Q ss_pred HHHH--hcCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Q 017264 79 ACMK--LEEYETAKVALEKGASLAPGDSRFTNLIKECEERI 117 (374)
Q Consensus 79 ~~~~--lg~~~eA~~~~~~a~~l~p~~~~~~~~~~~~~~~l 117 (374)
++.+ +.+|..|+..|..-+.-+ +-++..+..+..-+
T Consensus 294 A~~nRSLkdF~~AL~~yk~eL~~D---~ivr~Hl~~Lyd~l 331 (411)
T KOG1463|consen 294 AFGNRSLKDFEKALADYKKELAED---PIVRSHLQSLYDNL 331 (411)
T ss_pred HhcCCcHHHHHHHHHHhHHHHhcC---hHHHHHHHHHHHHH
Confidence 8854 788999999988766544 44555555555443
Done!