Query 017265
Match_columns 374
No_of_seqs 280 out of 1873
Neff 9.0
Searched_HMMs 46136
Date Fri Mar 29 07:03:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017265.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017265hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03146 aspartyl protease fam 100.0 1.3E-65 2.8E-70 499.8 38.5 356 14-374 10-431 (431)
2 PTZ00165 aspartyl protease; Pr 100.0 1E-48 2.2E-53 383.3 29.4 259 78-373 108-450 (482)
3 KOG1339 Aspartyl protease [Pos 100.0 5.6E-47 1.2E-51 367.0 28.1 287 81-372 37-397 (398)
4 cd05478 pepsin_A Pepsin A, asp 100.0 4.7E-47 1E-51 357.7 25.3 251 82-368 2-317 (317)
5 cd05490 Cathepsin_D2 Cathepsin 100.0 7.3E-47 1.6E-51 357.7 26.0 250 85-368 1-325 (325)
6 cd06096 Plasmepsin_5 Plasmepsi 100.0 9.3E-47 2E-51 356.8 25.7 251 89-372 2-326 (326)
7 cd05486 Cathespin_E Cathepsin 100.0 4.7E-46 1E-50 350.8 23.2 243 91-368 1-316 (316)
8 PTZ00147 plasmepsin-1; Provisi 100.0 1.4E-45 3.1E-50 358.5 26.2 257 79-370 128-450 (453)
9 cd05477 gastricsin Gastricsins 100.0 5.4E-45 1.2E-49 343.9 25.5 246 88-369 1-318 (318)
10 cd05472 cnd41_like Chloroplast 100.0 1E-44 2.2E-49 339.2 26.9 234 90-371 1-299 (299)
11 PTZ00013 plasmepsin 4 (PM4); P 100.0 1.1E-44 2.5E-49 351.5 28.0 258 78-370 126-449 (450)
12 cd06098 phytepsin Phytepsin, a 100.0 5.8E-45 1.3E-49 343.3 25.0 240 83-368 3-317 (317)
13 cd05485 Cathepsin_D_like Cathe 100.0 7.8E-45 1.7E-49 344.0 25.1 253 82-368 3-329 (329)
14 cd05487 renin_like Renin stimu 100.0 8E-45 1.7E-49 343.7 24.5 249 85-369 3-326 (326)
15 cd05488 Proteinase_A_fungi Fun 100.0 9.3E-45 2E-49 342.4 23.3 250 83-368 3-320 (320)
16 cd05473 beta_secretase_like Be 100.0 1E-42 2.2E-47 334.1 24.5 258 89-374 2-350 (364)
17 cd05489 xylanase_inhibitor_I_l 100.0 3E-42 6.5E-47 328.9 26.2 257 97-369 2-361 (362)
18 cd05475 nucellin_like Nucellin 100.0 1.6E-41 3.4E-46 313.3 22.6 209 89-371 1-273 (273)
19 cd06097 Aspergillopepsin_like 100.0 2.7E-40 5.8E-45 306.1 20.8 215 91-368 1-278 (278)
20 PF00026 Asp: Eukaryotic aspar 100.0 9E-41 1.9E-45 314.9 15.4 245 90-369 1-317 (317)
21 cd05476 pepsin_A_like_plant Ch 100.0 4E-39 8.8E-44 296.1 22.1 197 90-371 1-265 (265)
22 cd05474 SAP_like SAPs, pepsin- 100.0 4.9E-38 1.1E-42 293.5 21.9 214 90-369 2-295 (295)
23 cd05471 pepsin_like Pepsin-lik 100.0 5.7E-36 1.2E-40 277.5 21.5 214 91-368 1-283 (283)
24 PF14543 TAXi_N: Xylanase inhi 99.9 5.6E-27 1.2E-31 199.3 12.1 136 91-238 1-140 (164)
25 cd05470 pepsin_retropepsin_lik 99.9 1.1E-24 2.5E-29 172.8 12.2 106 93-224 1-109 (109)
26 PF14541 TAXi_C: Xylanase inhi 99.9 4.6E-22 9.9E-27 168.9 10.2 122 247-368 27-161 (161)
27 cd05483 retropepsin_like_bacte 98.2 4E-06 8.7E-11 64.0 6.9 93 90-226 2-94 (96)
28 TIGR02281 clan_AA_DTGA clan AA 97.1 0.0027 5.8E-08 50.9 7.5 96 87-226 8-103 (121)
29 PF13650 Asp_protease_2: Aspar 96.8 0.0078 1.7E-07 44.9 7.9 89 93-225 1-89 (90)
30 cd05479 RP_DDI RP_DDI; retrope 95.6 0.086 1.9E-06 42.3 8.2 35 87-123 13-47 (124)
31 cd05479 RP_DDI RP_DDI; retrope 95.0 0.038 8.2E-07 44.4 4.6 94 249-366 27-124 (124)
32 PF08284 RVP_2: Retroviral asp 94.5 0.056 1.2E-06 44.2 4.3 97 249-369 32-132 (135)
33 cd05484 retropepsin_like_LTR_2 93.3 0.1 2.2E-06 39.3 3.5 30 91-122 1-30 (91)
34 TIGR03698 clan_AA_DTGF clan AA 91.9 0.98 2.1E-05 35.2 7.5 24 341-364 84-107 (107)
35 PF13975 gag-asp_proteas: gag- 91.2 0.39 8.5E-06 34.4 4.3 35 87-123 5-39 (72)
36 PF00077 RVP: Retroviral aspar 87.6 0.87 1.9E-05 34.7 4.0 29 92-122 7-35 (100)
37 COG3577 Predicted aspartyl pro 87.1 1.8 3.9E-05 37.5 5.9 80 85-203 100-179 (215)
38 PF12384 Peptidase_A2B: Ty3 tr 86.9 1.3 2.9E-05 36.9 4.8 25 247-271 43-67 (177)
39 PF02160 Peptidase_A3: Caulifl 85.5 1.3 2.8E-05 38.5 4.3 52 302-368 66-117 (201)
40 PF11925 DUF3443: Protein of u 83.4 3.3 7.2E-05 39.2 6.4 108 91-227 24-149 (370)
41 TIGR02281 clan_AA_DTGA clan AA 82.3 8 0.00017 30.7 7.5 23 249-271 22-44 (121)
42 cd05482 HIV_retropepsin_like R 80.2 2.4 5.1E-05 31.7 3.4 25 94-120 2-26 (87)
43 cd06095 RP_RTVL_H_like Retrope 78.5 2.7 5.8E-05 31.2 3.3 27 94-122 2-28 (86)
44 COG5550 Predicted aspartyl pro 73.0 29 0.00063 27.6 7.8 88 251-364 28-117 (125)
45 PF12384 Peptidase_A2B: Ty3 tr 65.4 8.8 0.00019 32.1 3.6 30 91-120 33-62 (177)
46 PF13975 gag-asp_proteas: gag- 61.4 7.1 0.00015 27.8 2.2 23 249-271 19-41 (72)
47 PF13650 Asp_protease_2: Aspar 56.9 7 0.00015 28.5 1.6 23 249-271 9-31 (90)
48 PF09668 Asp_protease: Asparty 56.7 22 0.00048 28.4 4.5 23 249-271 35-57 (124)
49 PF09668 Asp_protease: Asparty 54.7 22 0.00048 28.4 4.2 34 88-123 22-55 (124)
50 cd06094 RP_Saci_like RP_Saci_l 53.9 67 0.0014 24.1 6.3 23 247-269 7-29 (89)
51 cd05483 retropepsin_like_bacte 49.0 13 0.00029 27.3 2.1 24 248-271 12-35 (96)
52 cd05484 retropepsin_like_LTR_2 48.0 13 0.00029 27.5 1.9 23 249-271 11-33 (91)
53 cd05481 retropepsin_like_LTR_1 41.9 21 0.00045 26.9 2.1 24 95-120 3-27 (93)
54 cd01206 Homer Homer type EVH1 39.2 74 0.0016 24.8 4.7 46 186-236 54-100 (111)
55 PF05984 Cytomega_UL20A: Cytom 35.0 48 0.001 24.2 2.9 8 1-8 1-8 (100)
56 TIGR03698 clan_AA_DTGF clan AA 33.7 55 0.0012 25.2 3.4 65 93-192 2-71 (107)
57 PF07172 GRP: Glycine rich pro 33.3 25 0.00053 26.7 1.3 12 1-13 1-12 (95)
58 cd05481 retropepsin_like_LTR_1 32.8 31 0.00067 25.9 1.8 23 249-271 10-32 (93)
59 cd05476 pepsin_A_like_plant Ch 31.7 73 0.0016 28.8 4.5 18 103-120 176-193 (265)
60 cd05475 nucellin_like Nucellin 31.6 78 0.0017 28.8 4.6 32 89-120 157-194 (273)
61 PF14757 NSP2-B_epitope: Immun 27.7 64 0.0014 28.4 3.0 69 216-284 169-253 (272)
62 cd05471 pepsin_like Pepsin-lik 26.3 72 0.0016 28.7 3.5 36 88-123 179-222 (283)
63 cd06097 Aspergillopepsin_like 25.4 71 0.0015 29.1 3.2 35 88-122 176-217 (278)
64 PF08284 RVP_2: Retroviral asp 25.0 1.1E+02 0.0023 24.8 3.8 30 89-120 20-49 (135)
65 cd00303 retropepsin_like Retro 24.2 72 0.0016 21.8 2.5 22 94-117 2-23 (92)
66 COG5510 Predicted small secret 23.9 61 0.0013 20.6 1.6 21 1-21 2-22 (44)
67 cd06098 phytepsin Phytepsin, a 23.9 87 0.0019 29.2 3.6 32 89-120 188-227 (317)
68 PF08194 DIM: DIM protein; In 21.9 97 0.0021 18.9 2.2 16 1-17 1-16 (36)
No 1
>PLN03146 aspartyl protease family protein; Provisional
Probab=100.00 E-value=1.3e-65 Score=499.80 Aligned_cols=356 Identities=59% Similarity=1.011 Sum_probs=295.1
Q ss_pred HHHhhccccccCCCceEEEEeccCCCCCCCCCCCCChhHHHHHHHhhhHhhhhccccccccCCCCCcccccccCCccEEE
Q 017265 14 LCFYVVSPIEAQTGGFSVELIHRDSPKSPFYNSSETPYQRLRDALTRSLNRLNHFNQNSSISSSKASQADIIPNNANYLI 93 (374)
Q Consensus 14 ~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~ 93 (374)
+.++++++...+.++++++|+||+++++|+++++.+..++++++++|+.+|++++.++... ...+..+....+++|++
T Consensus 10 ~~~~~~~~~~~~~~~~~~~l~h~~~~~sp~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~--~~~~~~~~~~~~~~Y~v 87 (431)
T PLN03146 10 FSFSELSAAEAPKGGFTVDLIHRDSPKSPFYNPSETPSQRLRNAFRRSISRVNHFRPTDAS--PNDPQSDLISNGGEYLM 87 (431)
T ss_pred HHHhhhhhccccCCceEEEEEeCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHhhcccc--CCccccCcccCCccEEE
Confidence 4555566666678899999999999999988888888899999999999999888543222 12344455667889999
Q ss_pred EEEecCCCceEEEEEEcCCCceeEecCCCCCCCCCCCCCCCCCCCCCCCccccCCCCccccCCCCC-CCCCC-cceeeEe
Q 017265 94 RISIGTPPTERLAVADTGSDLIWTQCEPCPPSQCYMQDSPLFDPKMSSTYKSLPCSSSQCASLNQK-SCSGV-NCQYSVS 171 (374)
Q Consensus 94 ~i~iGtP~q~~~l~~DTGS~~~Wv~~~~c~~~~C~~~~~~~y~p~~SsT~~~~~c~~~~C~~~~~~-~C~~~-~~~~~~~ 171 (374)
+|.||||||++.|++||||+++||+|.+|. .|..+.++.|||++|+||+.++|+++.|...+.. .|..+ .|.|.+.
T Consensus 88 ~i~iGTPpq~~~vi~DTGS~l~Wv~C~~C~--~C~~~~~~~fdps~SST~~~~~C~s~~C~~~~~~~~c~~~~~c~y~i~ 165 (431)
T PLN03146 88 NISIGTPPVPILAIADTGSDLIWTQCKPCD--DCYKQVSPLFDPKKSSTYKDVSCDSSQCQALGNQASCSDENTCTYSYS 165 (431)
T ss_pred EEEcCCCCceEEEEECCCCCcceEcCCCCc--ccccCCCCcccCCCCCCCcccCCCCcccccCCCCCCCCCCCCCeeEEE
Confidence 999999999999999999999999999998 9988889999999999999999999999877654 47554 6999999
Q ss_pred eCCCceeeeeEEEEEEEecCCCCCcccCCceEEeeeeeCCCCcCccccceeecCCCcchhhHHhhhhc------------
Q 017265 172 YGDGSFSNGNLATETVTLGSTTGQAVALPGITFGCGTNNGGLFNSKTTGIVGLGGGDISLISQMRTTI------------ 239 (374)
Q Consensus 172 Y~~gs~~~G~~~~D~v~i~~~~~~~~~~~~~~fg~~~~~~~~~~~~~~GilGLg~~~~s~~~ql~~~~------------ 239 (374)
|+||+.+.|.+++|+|+|++..+..+.++++.|||++...+.|....+||||||++..|+++||...+
T Consensus 166 Ygdgs~~~G~l~~Dtltlg~~~~~~~~v~~~~FGc~~~~~g~f~~~~~GilGLG~~~~Sl~sql~~~~~~~FSycL~~~~ 245 (431)
T PLN03146 166 YGDGSFTKGNLAVETLTIGSTSGRPVSFPGIVFGCGHNNGGTFDEKGSGIVGLGGGPLSLISQLGSSIGGKFSYCLVPLS 245 (431)
T ss_pred eCCCCceeeEEEEEEEEeccCCCCcceeCCEEEeCCCCCCCCccCCCceeEecCCCCccHHHHhhHhhCCcEEEECCCCC
Confidence 99999878999999999998544445789999999998877663468999999999999999975321
Q ss_pred -----------CCc--------------e-------------------ec--------CCCCCcEEEeccccccccCHhH
Q 017265 240 -----------AGN--------------Q-------------------RL--------GVSTPDIVIDSGTTLTFLPQGY 267 (374)
Q Consensus 240 -----------~~~--------------k-------------------~~--------~~~~~~~iiDSGtt~~~lp~~~ 267 (374)
|+. + +. ..+.+++||||||++++||+++
T Consensus 246 ~~~~~~g~l~fG~~~~~~~~~~~~tPl~~~~~~~~y~V~L~gIsVgg~~l~~~~~~~~~~~~g~~iiDSGTt~t~Lp~~~ 325 (431)
T PLN03146 246 SDSNGTSKINFGTNAIVSGSGVVSTPLVSKDPDTFYYLTLEAISVGSKKLPYTGSSKNGVEEGNIIIDSGTTLTLLPSDF 325 (431)
T ss_pred CCCCCcceEEeCCccccCCCCceEcccccCCCCCeEEEeEEEEEECCEECcCCccccccCCCCcEEEeCCccceecCHHH
Confidence 110 0 00 0112579999999999999999
Q ss_pred HHHHHHHHHhhcccCccCCCCCCcccccccCCCCCcceEEEEEeCcEEEEcCceeEEEeCCCeEEEEEEcCCCCcceech
Q 017265 268 NSNLLSVMSSMIEAQPVADPTGSLELCYSFNSLSQVPEVTIHFRGADVKLSRSNFFVKVSEDIVCSVFKGITNSVPIYGN 347 (374)
Q Consensus 268 ~~~i~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~P~i~f~f~g~~~~l~~~~~~~~~~~~~~C~~i~~~~~~~~ilG~ 347 (374)
|++|.++|.+.++..........+++|+.......+|+|+|+|+|+++.|++++|+++..++..|+++... .+.||||+
T Consensus 326 y~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~P~i~~~F~Ga~~~l~~~~~~~~~~~~~~Cl~~~~~-~~~~IlG~ 404 (431)
T PLN03146 326 YSELESAVEEAIGGERVSDPQGLLSLCYSSTSDIKLPIITAHFTGADVKLQPLNTFVKVSEDLVCFAMIPT-SSIAIFGN 404 (431)
T ss_pred HHHHHHHHHHHhccccCCCCCCCCCccccCCCCCCCCeEEEEECCCeeecCcceeEEEcCCCcEEEEEecC-CCceEECe
Confidence 99999999998865443333334667997543347899999999999999999999988777899997765 45799999
Q ss_pred hhhcceEEEEECCCCEEEEecCCCCCC
Q 017265 348 IMQTNFLVGYDIEQQTVSFKPTDCTKQ 374 (374)
Q Consensus 348 ~fl~~~y~vfD~~~~riGfa~~~C~~~ 374 (374)
.|||++|+|||++++|||||+.+|+++
T Consensus 405 ~~q~~~~vvyDl~~~~igFa~~~C~~~ 431 (431)
T PLN03146 405 LAQMNFLVGYDLESKTVSFKPTDCTKM 431 (431)
T ss_pred eeEeeEEEEEECCCCEEeeecCCcCcC
Confidence 999999999999999999999999975
No 2
>PTZ00165 aspartyl protease; Provisional
Probab=100.00 E-value=1e-48 Score=383.28 Aligned_cols=259 Identities=22% Similarity=0.402 Sum_probs=207.0
Q ss_pred CCcccccccCCccEEEEEEecCCCceEEEEEEcCCCceeEecCCCCCCCCCCCCCCCCCCCCCCCccccCCCCccccCCC
Q 017265 78 KASQADIIPNNANYLIRISIGTPPTERLAVADTGSDLIWTQCEPCPPSQCYMQDSPLFDPKMSSTYKSLPCSSSQCASLN 157 (374)
Q Consensus 78 ~~~~~~~~~~~~~Y~~~i~iGtP~q~~~l~~DTGS~~~Wv~~~~c~~~~C~~~~~~~y~p~~SsT~~~~~c~~~~C~~~~ 157 (374)
...+++.++.|.+|+++|+||||||+|.|+|||||+++||+|..|....| +.++.|||++|+||+...+...
T Consensus 108 ~~~~~l~n~~d~~Y~~~I~IGTPpQ~f~Vv~DTGSS~lWVps~~C~~~~C--~~~~~yd~s~SSTy~~~~~~~~------ 179 (482)
T PTZ00165 108 YLQQDLLNFHNSQYFGEIQVGTPPKSFVVVFDTGSSNLWIPSKECKSGGC--APHRKFDPKKSSTYTKLKLGDE------ 179 (482)
T ss_pred ccceecccccCCeEEEEEEeCCCCceEEEEEeCCCCCEEEEchhcCcccc--cccCCCCccccCCcEecCCCCc------
Confidence 34567788999999999999999999999999999999999999985557 5788999999999998432110
Q ss_pred CCCCCCCcceeeEeeCCCceeeeeEEEEEEEecCCCCCcccCCceEEeeeeeCCC-Cc-CccccceeecCCCcch-----
Q 017265 158 QKSCSGVNCQYSVSYGDGSFSNGNLATETVTLGSTTGQAVALPGITFGCGTNNGG-LF-NSKTTGIVGLGGGDIS----- 230 (374)
Q Consensus 158 ~~~C~~~~~~~~~~Y~~gs~~~G~~~~D~v~i~~~~~~~~~~~~~~fg~~~~~~~-~~-~~~~~GilGLg~~~~s----- 230 (374)
...+.+.|++|+.. |.+++|+|+|++. .+++|.||+++...+ .| ...+|||||||++..+
T Consensus 180 -------~~~~~i~YGsGs~~-G~l~~DtV~ig~l-----~i~~q~FG~a~~~s~~~f~~~~~DGILGLg~~~~s~~s~~ 246 (482)
T PTZ00165 180 -------SAETYIQYGTGECV-LALGKDTVKIGGL-----KVKHQSIGLAIEESLHPFADLPFDGLVGLGFPDKDFKESK 246 (482)
T ss_pred -------cceEEEEeCCCcEE-EEEEEEEEEECCE-----EEccEEEEEEEeccccccccccccceeecCCCcccccccC
Confidence 02577999999987 9999999999986 899999999998765 35 5679999999998652
Q ss_pred ----hhHHhhhh-----------------------cCCc-----------------------------eecC------CC
Q 017265 231 ----LISQMRTT-----------------------IAGN-----------------------------QRLG------VS 248 (374)
Q Consensus 231 ----~~~ql~~~-----------------------~~~~-----------------------------k~~~------~~ 248 (374)
++.+|..+ +|+. +... ..
T Consensus 247 ~~~p~~~~l~~qgli~~~~FS~yL~~~~~~~G~l~fGGiD~~~~~~~g~i~~~Pv~~~~yW~i~l~~i~vgg~~~~~~~~ 326 (482)
T PTZ00165 247 KALPIVDNIKKQNLLKRNIFSFYMSKDLNQPGSISFGSADPKYTLEGHKIWWFPVISTDYWEIEVVDILIDGKSLGFCDR 326 (482)
T ss_pred CCCCHHHHHHHcCCcccceEEEEeccCCCCCCEEEeCCcCHHHcCCCCceEEEEccccceEEEEeCeEEECCEEeeecCC
Confidence 33333221 1111 0010 23
Q ss_pred CCcEEEeccccccccCHhHHHHHHHHHHhhcccCccCCCCCCcccccccCCCCCcceEEEEEeCc-----EEEEcCceeE
Q 017265 249 TPDIVIDSGTTLTFLPQGYNSNLLSVMSSMIEAQPVADPTGSLELCYSFNSLSQVPEVTIHFRGA-----DVKLSRSNFF 323 (374)
Q Consensus 249 ~~~~iiDSGtt~~~lp~~~~~~i~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~P~i~f~f~g~-----~~~l~~~~~~ 323 (374)
...+|+||||+++++|++++++|.+++... .+|+... .+|+|+|+|+|. +|.|+|++|+
T Consensus 327 ~~~aIiDTGTSli~lP~~~~~~i~~~i~~~-------------~~C~~~~---~lP~itf~f~g~~g~~v~~~l~p~dYi 390 (482)
T PTZ00165 327 KCKAAIDTGSSLITGPSSVINPLLEKIPLE-------------EDCSNKD---SLPRISFVLEDVNGRKIKFDMDPEDYV 390 (482)
T ss_pred ceEEEEcCCCccEeCCHHHHHHHHHHcCCc-------------ccccccc---cCCceEEEECCCCCceEEEEEchHHee
Confidence 467999999999999999999997766421 2598654 789999999864 8999999999
Q ss_pred EEe----CCCeEEEE-EEcCC-----CCcceechhhhcceEEEEECCCCEEEEecCCCCC
Q 017265 324 VKV----SEDIVCSV-FKGIT-----NSVPIYGNIMQTNFLVGYDIEQQTVSFKPTDCTK 373 (374)
Q Consensus 324 ~~~----~~~~~C~~-i~~~~-----~~~~ilG~~fl~~~y~vfD~~~~riGfa~~~C~~ 373 (374)
++. .++..|+. |+..+ ++.||||++|||+||+|||++++|||||+++|+.
T Consensus 391 ~~~~~~~~~~~~C~~g~~~~d~~~~~g~~~ILGd~Flr~yy~VFD~~n~rIGfA~a~~~~ 450 (482)
T PTZ00165 391 IEEGDSEEQEHQCVIGIIPMDVPAPRGPLFVLGNNFIRKYYSIFDRDHMMVGLVPAKHDQ 450 (482)
T ss_pred eecccCCCCCCeEEEEEEECCCCCCCCceEEEchhhheeEEEEEeCCCCEEEEEeeccCC
Confidence 974 23568976 87642 3579999999999999999999999999999864
No 3
>KOG1339 consensus Aspartyl protease [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.6e-47 Score=367.00 Aligned_cols=287 Identities=41% Similarity=0.743 Sum_probs=230.1
Q ss_pred ccccccCCccEEEEEEecCCCceEEEEEEcCCCceeEecCCCCCCCCCCCCCCCCCCCCCCCccccCCCCccccCCCCCC
Q 017265 81 QADIIPNNANYLIRISIGTPPTERLAVADTGSDLIWTQCEPCPPSQCYMQDSPLFDPKMSSTYKSLPCSSSQCASLNQKS 160 (374)
Q Consensus 81 ~~~~~~~~~~Y~~~i~iGtP~q~~~l~~DTGS~~~Wv~~~~c~~~~C~~~~~~~y~p~~SsT~~~~~c~~~~C~~~~~~~ 160 (374)
.......+++|+++|.||||||+|.|++||||+++||+|..|.. .|..+.++.|||++|+||+.+.|.++.|.......
T Consensus 37 ~~~~~~~~~~Y~~~i~IGTPpq~f~v~~DTGS~~lWV~c~~c~~-~C~~~~~~~f~p~~SSt~~~~~c~~~~c~~~~~~~ 115 (398)
T KOG1339|consen 37 ESLSSYSSGEYYGNISIGTPPQSFTVVLDTGSDLLWVPCAPCSS-ACYSQHNPIFDPSASSTYKSVGCSSPRCKSLPQSC 115 (398)
T ss_pred cccccccccccEEEEecCCCCeeeEEEEeCCCCceeeccccccc-cccccCCCccCccccccccccCCCCccccccccCc
Confidence 33445667899999999999999999999999999999999973 58765556699999999999999999999998774
Q ss_pred CCCCcceeeEeeCCCceeeeeEEEEEEEecCCCCCcccCCceEEeeeeeCCCCc-C-ccccceeecCCCcchhhHHhhhh
Q 017265 161 CSGVNCQYSVSYGDGSFSNGNLATETVTLGSTTGQAVALPGITFGCGTNNGGLF-N-SKTTGIVGLGGGDISLISQMRTT 238 (374)
Q Consensus 161 C~~~~~~~~~~Y~~gs~~~G~~~~D~v~i~~~~~~~~~~~~~~fg~~~~~~~~~-~-~~~~GilGLg~~~~s~~~ql~~~ 238 (374)
|....|.|.+.|+||+.++|.+++|+|+|++.+ .+.+++++|||+....+.+ . .+.+||||||++.+++++|+...
T Consensus 116 ~~~~~C~y~i~Ygd~~~~~G~l~~Dtv~~~~~~--~~~~~~~~FGc~~~~~g~~~~~~~~dGIlGLg~~~~S~~~q~~~~ 193 (398)
T KOG1339|consen 116 SPNSSCPYSIQYGDGSSTSGYLATDTVTFGGTT--SLPVPNQTFGCGTNNPGSFGLFAAFDGILGLGRGSLSVPSQLPSF 193 (398)
T ss_pred ccCCcCceEEEeCCCCceeEEEEEEEEEEcccc--ccccccEEEEeeecCccccccccccceEeecCCCCccceeecccc
Confidence 455589999999998777799999999999832 2277889999999987643 3 57899999999999998886542
Q ss_pred c-------------------CCc-----------------------e--e----------cC----------CCCCcEEE
Q 017265 239 I-------------------AGN-----------------------Q--R----------LG----------VSTPDIVI 254 (374)
Q Consensus 239 ~-------------------~~~-----------------------k--~----------~~----------~~~~~~ii 254 (374)
. +|. . . .. ...+++|+
T Consensus 194 ~~~~~~FS~cL~~~~~~~~~~G~i~fG~~d~~~~~~~l~~tPl~~~~~~~y~v~l~~I~vgg~~~~~~~~~~~~~~~~ii 273 (398)
T KOG1339|consen 194 YNAINVFSYCLSSNGSPSSGGGSIIFGGVDSSHYTGSLTYTPLLSNPSTYYQVNLDGISVGGKRPIGSSLFCTDGGGAII 273 (398)
T ss_pred cCCceeEEEEeCCCCCCCCCCcEEEECCCcccCcCCceEEEeeccCCCccEEEEEeEEEECCccCCCcceEecCCCCEEE
Confidence 1 111 0 0 00 01478999
Q ss_pred eccccccccCHhHHHHHHHHHHhhcccCccCCCCCCcccccccCCC-CCcceEEEEEe-CcEEEEcCceeEEEeCCCeE-
Q 017265 255 DSGTTLTFLPQGYNSNLLSVMSSMIEAQPVADPTGSLELCYSFNSL-SQVPEVTIHFR-GADVKLSRSNFFVKVSEDIV- 331 (374)
Q Consensus 255 DSGtt~~~lp~~~~~~i~~~~~~~~~~~~~~~~~~~~~~C~~~~~~-~~~P~i~f~f~-g~~~~l~~~~~~~~~~~~~~- 331 (374)
||||++++||+++|++|.++|...+.. .. .....+..|+..... ..+|.|+|+|+ |+.|.|++++|+++.+++..
T Consensus 274 DSGTs~t~lp~~~y~~i~~~~~~~~~~-~~-~~~~~~~~C~~~~~~~~~~P~i~~~f~~g~~~~l~~~~y~~~~~~~~~~ 351 (398)
T KOG1339|consen 274 DSGTSLTYLPTSAYNALREAIGAEVSV-VG-TDGEYFVPCFSISTSGVKLPDITFHFGGGAVFSLPPKNYLVEVSDGGGV 351 (398)
T ss_pred ECCcceeeccHHHHHHHHHHHHhheec-cc-cCCceeeecccCCCCcccCCcEEEEECCCcEEEeCccceEEEECCCCCc
Confidence 999999999999999999999876411 11 122224469977411 13999999999 79999999999998876444
Q ss_pred EEEE-EcCCC-CcceechhhhcceEEEEECC-CCEEEEec--CCCC
Q 017265 332 CSVF-KGITN-SVPIYGNIMQTNFLVGYDIE-QQTVSFKP--TDCT 372 (374)
Q Consensus 332 C~~i-~~~~~-~~~ilG~~fl~~~y~vfD~~-~~riGfa~--~~C~ 372 (374)
|+++ ..... ..||||+.|||+++++||.. ++|||||+ ..|+
T Consensus 352 Cl~~~~~~~~~~~~ilG~~~~~~~~~~~D~~~~~riGfa~~~~~c~ 397 (398)
T KOG1339|consen 352 CLAFFNGMDSGPLWILGDVFQQNYLVVFDLGENSRVGFAPALTNCS 397 (398)
T ss_pred eeeEEecCCCCceEEEchHHhCCEEEEEeCCCCCEEEeccccccCC
Confidence 9994 44333 48999999999999999999 99999999 7886
No 4
>cd05478 pepsin_A Pepsin A, aspartic protease produced in gastric mucosa of mammals. Pepsin, a well-known aspartic protease, is produced by the human gastric mucosa in seven different zymogen isoforms, subdivided into two types: pepsinogen A and pepsinogen C. The prosequence of the zymogens are self cleaved under acidic pH. The mature enzymes are called pepsin A and pepsin C, correspondingly. The well researched porcine pepsin is also in this pepsin A family. Pepsins play an integral role in the digestion process of vertebrates. Pepsins are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. More recently evolved enzymes have similar three-dimensional structures, however their amino acid sequences are more divergent except for the conserved catalytic site motif. Pepsins specifically cleave bonds in peptides which
Probab=100.00 E-value=4.7e-47 Score=357.73 Aligned_cols=251 Identities=25% Similarity=0.436 Sum_probs=204.1
Q ss_pred cccccCCccEEEEEEecCCCceEEEEEEcCCCceeEecCCCCCCCCCCCCCCCCCCCCCCCccccCCCCccccCCCCCCC
Q 017265 82 ADIIPNNANYLIRISIGTPPTERLAVADTGSDLIWTQCEPCPPSQCYMQDSPLFDPKMSSTYKSLPCSSSQCASLNQKSC 161 (374)
Q Consensus 82 ~~~~~~~~~Y~~~i~iGtP~q~~~l~~DTGS~~~Wv~~~~c~~~~C~~~~~~~y~p~~SsT~~~~~c~~~~C~~~~~~~C 161 (374)
++.++.+.+|+++|.||||+|++.|+|||||+++||+|..|....| +.++.|||++|+|++...
T Consensus 2 ~l~n~~~~~Y~~~i~vGtp~q~~~v~~DTGS~~~wv~~~~C~~~~c--~~~~~f~~~~Sst~~~~~-------------- 65 (317)
T cd05478 2 PLTNYLDMEYYGTISIGTPPQDFTVIFDTGSSNLWVPSVYCSSQAC--SNHNRFNPRQSSTYQSTG-------------- 65 (317)
T ss_pred ccccccCCEEEEEEEeCCCCcEEEEEEeCCCccEEEecCCCCcccc--cccCcCCCCCCcceeeCC--------------
Confidence 3456679999999999999999999999999999999999984445 578999999999999876
Q ss_pred CCCcceeeEeeCCCceeeeeEEEEEEEecCCCCCcccCCceEEeeeeeCCCCc--CccccceeecCCCcch------hhH
Q 017265 162 SGVNCQYSVSYGDGSFSNGNLATETVTLGSTTGQAVALPGITFGCGTNNGGLF--NSKTTGIVGLGGGDIS------LIS 233 (374)
Q Consensus 162 ~~~~~~~~~~Y~~gs~~~G~~~~D~v~i~~~~~~~~~~~~~~fg~~~~~~~~~--~~~~~GilGLg~~~~s------~~~ 233 (374)
+.|.+.|++|+. .|.+++|+|+|++. .++++.|||++...+.+ ....+||||||++..+ ++.
T Consensus 66 ----~~~~~~yg~gs~-~G~~~~D~v~ig~~-----~i~~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~ 135 (317)
T cd05478 66 ----QPLSIQYGTGSM-TGILGYDTVQVGGI-----SDTNQIFGLSETEPGSFFYYAPFDGILGLAYPSIASSGATPVFD 135 (317)
T ss_pred ----cEEEEEECCceE-EEEEeeeEEEECCE-----EECCEEEEEEEecCccccccccccceeeeccchhcccCCCCHHH
Confidence 899999999996 59999999999987 89999999998876644 3468999999987543 555
Q ss_pred Hhhhh-----------------------cCCc---------------------------ee-----cCCCCCcEEEeccc
Q 017265 234 QMRTT-----------------------IAGN---------------------------QR-----LGVSTPDIVIDSGT 258 (374)
Q Consensus 234 ql~~~-----------------------~~~~---------------------------k~-----~~~~~~~~iiDSGt 258 (374)
||.++ +|+. +. .......+||||||
T Consensus 136 ~L~~~g~i~~~~FS~~L~~~~~~~g~l~~Gg~d~~~~~g~l~~~p~~~~~~w~v~l~~v~v~g~~~~~~~~~~~iiDTGt 215 (317)
T cd05478 136 NMMSQGLVSQDLFSVYLSSNGQQGSVVTFGGIDPSYYTGSLNWVPVTAETYWQITVDSVTINGQVVACSGGCQAIVDTGT 215 (317)
T ss_pred HHHhCCCCCCCEEEEEeCCCCCCCeEEEEcccCHHHccCceEEEECCCCcEEEEEeeEEEECCEEEccCCCCEEEECCCc
Confidence 55422 1111 00 01234579999999
Q ss_pred cccccCHhHHHHHHHHHHhhcccCccCCCCCCcccccccCCCCCcceEEEEEeCcEEEEcCceeEEEeCCCeEEEE-EEc
Q 017265 259 TLTFLPQGYNSNLLSVMSSMIEAQPVADPTGSLELCYSFNSLSQVPEVTIHFRGADVKLSRSNFFVKVSEDIVCSV-FKG 337 (374)
Q Consensus 259 t~~~lp~~~~~~i~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~P~i~f~f~g~~~~l~~~~~~~~~~~~~~C~~-i~~ 337 (374)
+++++|++++++|++++.... ...+.+.+ +|+... .+|.|+|+|+|++++||+++|+++. ...|++ |+.
T Consensus 216 s~~~lp~~~~~~l~~~~~~~~----~~~~~~~~-~C~~~~---~~P~~~f~f~g~~~~i~~~~y~~~~--~~~C~~~~~~ 285 (317)
T cd05478 216 SLLVGPSSDIANIQSDIGASQ----NQNGEMVV-NCSSIS---SMPDVVFTINGVQYPLPPSAYILQD--QGSCTSGFQS 285 (317)
T ss_pred hhhhCCHHHHHHHHHHhCCcc----ccCCcEEe-CCcCcc---cCCcEEEEECCEEEEECHHHheecC--CCEEeEEEEe
Confidence 999999999999988775432 12233334 598654 7899999999999999999999875 468987 877
Q ss_pred CC-CCcceechhhhcceEEEEECCCCEEEEec
Q 017265 338 IT-NSVPIYGNIMQTNFLVGYDIEQQTVSFKP 368 (374)
Q Consensus 338 ~~-~~~~ilG~~fl~~~y~vfD~~~~riGfa~ 368 (374)
.+ ...||||++|||++|+|||++++||||||
T Consensus 286 ~~~~~~~IlG~~fl~~~y~vfD~~~~~iG~A~ 317 (317)
T cd05478 286 MGLGELWILGDVFIRQYYSVFDRANNKVGLAP 317 (317)
T ss_pred CCCCCeEEechHHhcceEEEEeCCCCEEeecC
Confidence 64 46799999999999999999999999996
No 5
>cd05490 Cathepsin_D2 Cathepsin_D2, pepsin family of proteinases. Cathepsin D is the major aspartic proteinase of the lysosomal compartment where it functions in protein catabolism. It is a member of the pepsin family of proteinases. This enzyme is distinguished from other members of the pepsin family by two features that are characteristic of lysosomal hydrolases. First, mature Cathepsin D is found predominantly in a two-chain form due to a posttranslational cleavage event. Second, it contains phosphorylated, N-linked oligosaccharides that target the enzyme to lysosomes via mannose-6-phosphate receptors. Cathepsin D preferentially attacks peptide bonds flanked by bulky hydrophobic amino acids and its pH optimum is between pH 2.8 and 4.0. Two active site aspartic acid residues are essential for the catalytic activity of aspartic proteinases. Like other aspartic proteinases, Cathepsin D is a bilobed molecule; the two evolutionary related lobes are mostly made up of beta-sheets and flank
Probab=100.00 E-value=7.3e-47 Score=357.70 Aligned_cols=250 Identities=25% Similarity=0.461 Sum_probs=200.1
Q ss_pred ccCCccEEEEEEecCCCceEEEEEEcCCCceeEecCCCCC--CCCCCCCCCCCCCCCCCCccccCCCCccccCCCCCCCC
Q 017265 85 IPNNANYLIRISIGTPPTERLAVADTGSDLIWTQCEPCPP--SQCYMQDSPLFDPKMSSTYKSLPCSSSQCASLNQKSCS 162 (374)
Q Consensus 85 ~~~~~~Y~~~i~iGtP~q~~~l~~DTGS~~~Wv~~~~c~~--~~C~~~~~~~y~p~~SsT~~~~~c~~~~C~~~~~~~C~ 162 (374)
++.|.+|+++|.||||+|++.|+|||||+++||+|..|.. ..| ..++.|||++|+||+...
T Consensus 1 ~~~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~~~C--~~~~~y~~~~SsT~~~~~--------------- 63 (325)
T cd05490 1 NYMDAQYYGEIGIGTPPQTFTVVFDTGSSNLWVPSVHCSLLDIAC--WLHHKYNSSKSSTYVKNG--------------- 63 (325)
T ss_pred CCcCCEEEEEEEECCCCcEEEEEEeCCCccEEEEcCCCCCCCccc--cCcCcCCcccCcceeeCC---------------
Confidence 3568899999999999999999999999999999999972 256 467899999999999765
Q ss_pred CCcceeeEeeCCCceeeeeEEEEEEEecCCCCCcccCCceEEeeeeeCCC-Cc-CccccceeecCCCcchh------hHH
Q 017265 163 GVNCQYSVSYGDGSFSNGNLATETVTLGSTTGQAVALPGITFGCGTNNGG-LF-NSKTTGIVGLGGGDISL------ISQ 234 (374)
Q Consensus 163 ~~~~~~~~~Y~~gs~~~G~~~~D~v~i~~~~~~~~~~~~~~fg~~~~~~~-~~-~~~~~GilGLg~~~~s~------~~q 234 (374)
+.|.+.|++|+. .|.+++|+|+|++. .++++.|||++...+ .+ ....+||||||++..+. +++
T Consensus 64 ---~~~~i~Yg~G~~-~G~~~~D~v~~g~~-----~~~~~~Fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~ 134 (325)
T cd05490 64 ---TEFAIQYGSGSL-SGYLSQDTVSIGGL-----QVEGQLFGEAVKQPGITFIAAKFDGILGMAYPRISVDGVTPVFDN 134 (325)
T ss_pred ---cEEEEEECCcEE-EEEEeeeEEEECCE-----EEcCEEEEEEeeccCCcccceeeeEEEecCCccccccCCCCHHHH
Confidence 899999999986 59999999999987 899999999988765 34 45789999999976652 334
Q ss_pred hhhh-------------------------cCCc---------------------------eec-----CCCCCcEEEecc
Q 017265 235 MRTT-------------------------IAGN---------------------------QRL-----GVSTPDIVIDSG 257 (374)
Q Consensus 235 l~~~-------------------------~~~~---------------------------k~~-----~~~~~~~iiDSG 257 (374)
|..+ +|+. +.. ......+|||||
T Consensus 135 l~~~g~i~~~~FS~~L~~~~~~~~~G~l~~Gg~d~~~~~g~l~~~~~~~~~~w~v~l~~i~vg~~~~~~~~~~~aiiDSG 214 (325)
T cd05490 135 IMAQKLVEQNVFSFYLNRDPDAQPGGELMLGGTDPKYYTGDLHYVNVTRKAYWQIHMDQVDVGSGLTLCKGGCEAIVDTG 214 (325)
T ss_pred HHhcCCCCCCEEEEEEeCCCCCCCCCEEEECccCHHHcCCceEEEEcCcceEEEEEeeEEEECCeeeecCCCCEEEECCC
Confidence 3321 1111 000 123457999999
Q ss_pred ccccccCHhHHHHHHHHHHhhcccCccCCCCCCcccccccCCCCCcceEEEEEeCcEEEEcCceeEEEeCC--CeEEEE-
Q 017265 258 TTLTFLPQGYNSNLLSVMSSMIEAQPVADPTGSLELCYSFNSLSQVPEVTIHFRGADVKLSRSNFFVKVSE--DIVCSV- 334 (374)
Q Consensus 258 tt~~~lp~~~~~~i~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~P~i~f~f~g~~~~l~~~~~~~~~~~--~~~C~~- 334 (374)
|+++++|++++++|.+++... ....+.+.+ +|+... .+|+|+|+|+|++++|+|++|+++... ...|++
T Consensus 215 Tt~~~~p~~~~~~l~~~~~~~----~~~~~~~~~-~C~~~~---~~P~i~f~fgg~~~~l~~~~y~~~~~~~~~~~C~~~ 286 (325)
T cd05490 215 TSLITGPVEEVRALQKAIGAV----PLIQGEYMI-DCEKIP---TLPVISFSLGGKVYPLTGEDYILKVSQRGTTICLSG 286 (325)
T ss_pred CccccCCHHHHHHHHHHhCCc----cccCCCEEe-cccccc---cCCCEEEEECCEEEEEChHHeEEeccCCCCCEEeeE
Confidence 999999999999998887542 122334434 598654 789999999999999999999997642 358987
Q ss_pred EEcCC-----CCcceechhhhcceEEEEECCCCEEEEec
Q 017265 335 FKGIT-----NSVPIYGNIMQTNFLVGYDIEQQTVSFKP 368 (374)
Q Consensus 335 i~~~~-----~~~~ilG~~fl~~~y~vfD~~~~riGfa~ 368 (374)
|+..+ ...||||++|||++|+|||++++|||||+
T Consensus 287 ~~~~~~~~~~~~~~ilGd~flr~~y~vfD~~~~~IGfA~ 325 (325)
T cd05490 287 FMGLDIPPPAGPLWILGDVFIGRYYTVFDRDNDRVGFAK 325 (325)
T ss_pred EEECCCCCCCCceEEEChHhheeeEEEEEcCCcEeeccC
Confidence 76532 45799999999999999999999999996
No 6
>cd06096 Plasmepsin_5 Plasmepsins are a class of aspartic proteinases produced by the plasmodium parasite. The family contains a group of aspartic proteinases homologous to plasmepsin 5. Plasmepsins are a class of at least 10 enzymes produced by the plasmodium parasite. Through their haemoglobin-degrading activity, they are an important cause of symptoms in malaria sufferers. This family of enzymes is a potential target for anti-malarial drugs. Plasmepsins are aspartic acid proteases, which means their active site contains two aspartic acid residues. These two aspartic acid residue act respectively as proton donor and proton acceptor, catalyzing the hydrolysis of peptide bond in proteins. Aspartic proteinases are composed of two structurally similar beta barrel lobes, each lobe contributing an aspartic acid residue to form a catalytic dyad that acts to cleave the substrate peptide bond. The catalytic Asp residues are contained in an Asp-Thr-Gly-Ser/thr motif in both N- and C-terminal l
Probab=100.00 E-value=9.3e-47 Score=356.83 Aligned_cols=251 Identities=27% Similarity=0.479 Sum_probs=202.7
Q ss_pred ccEEEEEEecCCCceEEEEEEcCCCceeEecCCCCCCCCCCCCCCCCCCCCCCCccccCCCCccccCCCCCCCCCCccee
Q 017265 89 ANYLIRISIGTPPTERLAVADTGSDLIWTQCEPCPPSQCYMQDSPLFDPKMSSTYKSLPCSSSQCASLNQKSCSGVNCQY 168 (374)
Q Consensus 89 ~~Y~~~i~iGtP~q~~~l~~DTGS~~~Wv~~~~c~~~~C~~~~~~~y~p~~SsT~~~~~c~~~~C~~~~~~~C~~~~~~~ 168 (374)
++|+++|.||||+|++.|+|||||+++||+|..|. .|..+.++.|||++|+|++.+.|+++.|.. ...|.++.|.|
T Consensus 2 ~~Y~~~i~vGtP~Q~~~v~~DTGS~~~wv~~~~C~--~c~~~~~~~y~~~~Sst~~~~~C~~~~c~~--~~~~~~~~~~~ 77 (326)
T cd06096 2 AYYFIDIFIGNPPQKQSLILDTGSSSLSFPCSQCK--NCGIHMEPPYNLNNSITSSILYCDCNKCCY--CLSCLNNKCEY 77 (326)
T ss_pred ceEEEEEEecCCCeEEEEEEeCCCCceEEecCCCC--CcCCCCCCCcCcccccccccccCCCccccc--cCcCCCCcCcE
Confidence 57999999999999999999999999999999998 898777889999999999999999999954 34576678999
Q ss_pred eEeeCCCceeeeeEEEEEEEecCCCCC--cccCCceEEeeeeeCCCCc-CccccceeecCCCcch-h-------hHHhh-
Q 017265 169 SVSYGDGSFSNGNLATETVTLGSTTGQ--AVALPGITFGCGTNNGGLF-NSKTTGIVGLGGGDIS-L-------ISQMR- 236 (374)
Q Consensus 169 ~~~Y~~gs~~~G~~~~D~v~i~~~~~~--~~~~~~~~fg~~~~~~~~~-~~~~~GilGLg~~~~s-~-------~~ql~- 236 (374)
.+.|++|+.+.|.+++|+|+|++.... +....++.|||+....+.| ....+||||||++..+ . .+|..
T Consensus 78 ~i~Y~~gs~~~G~~~~D~v~lg~~~~~~~~~~~~~~~fg~~~~~~~~~~~~~~~GilGLg~~~~~~~~~~~~~l~~~~~~ 157 (326)
T cd06096 78 SISYSEGSSISGFYFSDFVSFESYLNSNSEKESFKKIFGCHTHETNLFLTQQATGILGLSLTKNNGLPTPIILLFTKRPK 157 (326)
T ss_pred EEEECCCCceeeEEEEEEEEeccCCCCccccccccEEeccCccccCcccccccceEEEccCCcccccCchhHHHHHhccc
Confidence 999999987779999999999976211 0112357899999887666 5678999999997643 1 11100
Q ss_pred ----hh-------------cCCc-----e--------------------------------ec-------CCCCCcEEEe
Q 017265 237 ----TT-------------IAGN-----Q--------------------------------RL-------GVSTPDIVID 255 (374)
Q Consensus 237 ----~~-------------~~~~-----k--------------------------------~~-------~~~~~~~iiD 255 (374)
.. +|+. + .. ......+|||
T Consensus 158 ~~~~~~FS~~l~~~~G~l~~Gg~d~~~~~~~~~~~~~~~~~~~~~p~~~~~~y~v~l~~i~vg~~~~~~~~~~~~~aivD 237 (326)
T cd06096 158 LKKDKIFSICLSEDGGELTIGGYDKDYTVRNSSIGNNKVSKIVWTPITRKYYYYVKLEGLSVYGTTSNSGNTKGLGMLVD 237 (326)
T ss_pred ccCCceEEEEEcCCCeEEEECccChhhhcccccccccccCCceEEeccCCceEEEEEEEEEEcccccceecccCCCEEEe
Confidence 00 1110 0 00 1235679999
Q ss_pred ccccccccCHhHHHHHHHHHHhhcccCccCCCCCCcccccccCCCCCcceEEEEEe-CcEEEEcCceeEEEeCCCeEEEE
Q 017265 256 SGTTLTFLPQGYNSNLLSVMSSMIEAQPVADPTGSLELCYSFNSLSQVPEVTIHFR-GADVKLSRSNFFVKVSEDIVCSV 334 (374)
Q Consensus 256 SGtt~~~lp~~~~~~i~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~P~i~f~f~-g~~~~l~~~~~~~~~~~~~~C~~ 334 (374)
|||++++||+++|++|.+++ |+|+|+|+ |++++|+|++|+++.++...|++
T Consensus 238 SGTs~~~lp~~~~~~l~~~~----------------------------P~i~~~f~~g~~~~i~p~~y~~~~~~~~c~~~ 289 (326)
T cd06096 238 SGSTLSHFPEDLYNKINNFF----------------------------PTITIIFENNLKIDWKPSSYLYKKESFWCKGG 289 (326)
T ss_pred CCCCcccCCHHHHHHHHhhc----------------------------CcEEEEEcCCcEEEECHHHhccccCCceEEEE
Confidence 99999999999999996554 79999998 79999999999998655544555
Q ss_pred EEcCCCCcceechhhhcceEEEEECCCCEEEEecCCCC
Q 017265 335 FKGITNSVPIYGNIMQTNFLVGYDIEQQTVSFKPTDCT 372 (374)
Q Consensus 335 i~~~~~~~~ilG~~fl~~~y~vfD~~~~riGfa~~~C~ 372 (374)
+... .+.||||++|||++|+|||++++|||||+++|.
T Consensus 290 ~~~~-~~~~ILG~~flr~~y~vFD~~~~riGfa~~~C~ 326 (326)
T cd06096 290 EKSV-SNKPILGASFFKNKQIIFDLDNNRIGFVESNCP 326 (326)
T ss_pred EecC-CCceEEChHHhcCcEEEEECcCCEEeeEcCCCC
Confidence 6654 568999999999999999999999999999994
No 7
>cd05486 Cathespin_E Cathepsin E, non-lysosomal aspartic protease. Cathepsin E is an intracellular, non-lysosomal aspartic protease expressed in a variety of cells and tissues. The protease has proposed physiological roles in antigen presentation by the MHC class II system, in the biogenesis of the vasoconstrictor peptide endothelin, and in neurodegeneration associated with brain ischemia and aging. Cathepsin E is the only A1 aspartic protease that exists as a homodimer with a disulfide bridge linking the two monomers. Like many other aspartic proteases, it is synthesized as a zymogen which is catalytically inactive towards its natural substrates at neutral pH and which auto-activates in an acidic environment. The overall structure follows the general fold of aspartic proteases of the A1 family, it is composed of two structurally similar beta barrel lobes, each lobe contributing an aspartic acid residue to form a catalytic dyad that acts to cleave the substrate peptide bond. The catalyt
Probab=100.00 E-value=4.7e-46 Score=350.75 Aligned_cols=243 Identities=27% Similarity=0.472 Sum_probs=194.8
Q ss_pred EEEEEEecCCCceEEEEEEcCCCceeEecCCCCCCCCCCCCCCCCCCCCCCCccccCCCCccccCCCCCCCCCCcceeeE
Q 017265 91 YLIRISIGTPPTERLAVADTGSDLIWTQCEPCPPSQCYMQDSPLFDPKMSSTYKSLPCSSSQCASLNQKSCSGVNCQYSV 170 (374)
Q Consensus 91 Y~~~i~iGtP~q~~~l~~DTGS~~~Wv~~~~c~~~~C~~~~~~~y~p~~SsT~~~~~c~~~~C~~~~~~~C~~~~~~~~~ 170 (374)
|+++|+||||+|+++|+|||||+++||+|..|....| ..++.|||++|+|++..+ +.|.+
T Consensus 1 Y~~~i~iGtP~Q~~~v~~DTGSs~~Wv~s~~C~~~~C--~~~~~y~~~~SsT~~~~~------------------~~~~i 60 (316)
T cd05486 1 YFGQISIGTPPQNFTVIFDTGSSNLWVPSIYCTSQAC--TKHNRFQPSESSTYVSNG------------------EAFSI 60 (316)
T ss_pred CeEEEEECCCCcEEEEEEcCCCccEEEecCCCCCccc--CccceECCCCCcccccCC------------------cEEEE
Confidence 8999999999999999999999999999999985567 467899999999999887 89999
Q ss_pred eeCCCceeeeeEEEEEEEecCCCCCcccCCceEEeeeeeCCC-Cc-CccccceeecCCCcchh------hHHhhhh----
Q 017265 171 SYGDGSFSNGNLATETVTLGSTTGQAVALPGITFGCGTNNGG-LF-NSKTTGIVGLGGGDISL------ISQMRTT---- 238 (374)
Q Consensus 171 ~Y~~gs~~~G~~~~D~v~i~~~~~~~~~~~~~~fg~~~~~~~-~~-~~~~~GilGLg~~~~s~------~~ql~~~---- 238 (374)
.|++|+.. |.+++|+|+|++. .++++.|||+....+ .| ....+||||||++..+. +.+|..+
T Consensus 61 ~Yg~g~~~-G~~~~D~v~ig~~-----~~~~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~p~~~~l~~qg~i~ 134 (316)
T cd05486 61 QYGTGSLT-GIIGIDQVTVEGI-----TVQNQQFAESVSEPGSTFQDSEFDGILGLAYPSLAVDGVTPVFDNMMAQNLVE 134 (316)
T ss_pred EeCCcEEE-EEeeecEEEECCE-----EEcCEEEEEeeccCcccccccccceEeccCchhhccCCCCCHHHHHHhcCCCC
Confidence 99999864 9999999999986 899999999877655 34 45789999999976652 3333211
Q ss_pred ---------------------cCCc---------------------------eec-----CCCCCcEEEeccccccccCH
Q 017265 239 ---------------------IAGN---------------------------QRL-----GVSTPDIVIDSGTTLTFLPQ 265 (374)
Q Consensus 239 ---------------------~~~~---------------------------k~~-----~~~~~~~iiDSGtt~~~lp~ 265 (374)
||+. +.. ......+||||||+++++|+
T Consensus 135 ~~~FS~~L~~~~~~~~~g~l~fGg~d~~~~~g~l~~~pi~~~~~w~v~l~~i~v~g~~~~~~~~~~aiiDTGTs~~~lP~ 214 (316)
T cd05486 135 LPMFSVYMSRNPNSADGGELVFGGFDTSRFSGQLNWVPVTVQGYWQIQLDNIQVGGTVIFCSDGCQAIVDTGTSLITGPS 214 (316)
T ss_pred CCEEEEEEccCCCCCCCcEEEEcccCHHHcccceEEEECCCceEEEEEeeEEEEecceEecCCCCEEEECCCcchhhcCH
Confidence 1111 000 11345799999999999999
Q ss_pred hHHHHHHHHHHhhcccCccCCCCCCcccccccCCCCCcceEEEEEeCcEEEEcCceeEEEe--CCCeEEEE-EEcCC---
Q 017265 266 GYNSNLLSVMSSMIEAQPVADPTGSLELCYSFNSLSQVPEVTIHFRGADVKLSRSNFFVKV--SEDIVCSV-FKGIT--- 339 (374)
Q Consensus 266 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~P~i~f~f~g~~~~l~~~~~~~~~--~~~~~C~~-i~~~~--- 339 (374)
+++++|.+++... .. .+.+.+ +|+... .+|+|+|+|+|++++|+|++|++.. .+...|++ |+...
T Consensus 215 ~~~~~l~~~~~~~----~~-~~~~~~-~C~~~~---~~p~i~f~f~g~~~~l~~~~y~~~~~~~~~~~C~~~~~~~~~~~ 285 (316)
T cd05486 215 GDIKQLQNYIGAT----AT-DGEYGV-DCSTLS---LMPSVTFTINGIPYSLSPQAYTLEDQSDGGGYCSSGFQGLDIPP 285 (316)
T ss_pred HHHHHHHHHhCCc----cc-CCcEEE-eccccc---cCCCEEEEECCEEEEeCHHHeEEecccCCCCEEeeEEEECCCCC
Confidence 9999997766432 11 233434 598654 6899999999999999999999875 23568986 76532
Q ss_pred --CCcceechhhhcceEEEEECCCCEEEEec
Q 017265 340 --NSVPIYGNIMQTNFLVGYDIEQQTVSFKP 368 (374)
Q Consensus 340 --~~~~ilG~~fl~~~y~vfD~~~~riGfa~ 368 (374)
.+.||||++|||++|+|||.+++|||||+
T Consensus 286 ~~~~~~ILGd~flr~~y~vfD~~~~~IGfA~ 316 (316)
T cd05486 286 PAGPLWILGDVFIRQYYSVFDRGNNRVGFAP 316 (316)
T ss_pred CCCCeEEEchHHhcceEEEEeCCCCEeeccC
Confidence 35799999999999999999999999996
No 8
>PTZ00147 plasmepsin-1; Provisional
Probab=100.00 E-value=1.4e-45 Score=358.50 Aligned_cols=257 Identities=20% Similarity=0.380 Sum_probs=202.6
Q ss_pred CcccccccCCccEEEEEEecCCCceEEEEEEcCCCceeEecCCCCCCCCCCCCCCCCCCCCCCCccccCCCCccccCCCC
Q 017265 79 ASQADIIPNNANYLIRISIGTPPTERLAVADTGSDLIWTQCEPCPPSQCYMQDSPLFDPKMSSTYKSLPCSSSQCASLNQ 158 (374)
Q Consensus 79 ~~~~~~~~~~~~Y~~~i~iGtP~q~~~l~~DTGS~~~Wv~~~~c~~~~C~~~~~~~y~p~~SsT~~~~~c~~~~C~~~~~ 158 (374)
...++.+..+.+|+++|+||||||++.|+|||||+++||+|..|....| +.++.|||++|+|++..+
T Consensus 128 ~~v~L~n~~n~~Y~~~I~IGTP~Q~f~Vi~DTGSsdlWVps~~C~~~~C--~~~~~yd~s~SsT~~~~~----------- 194 (453)
T PTZ00147 128 DNVELKDLANVMSYGEAKLGDNGQKFNFIFDTGSANLWVPSIKCTTEGC--ETKNLYDSSKSKTYEKDG----------- 194 (453)
T ss_pred CeeeccccCCCEEEEEEEECCCCeEEEEEEeCCCCcEEEeecCCCcccc--cCCCccCCccCcceEECC-----------
Confidence 3445557889999999999999999999999999999999999984456 577899999999999887
Q ss_pred CCCCCCcceeeEeeCCCceeeeeEEEEEEEecCCCCCcccCCceEEeeeeeCCC---Cc-CccccceeecCCCcch----
Q 017265 159 KSCSGVNCQYSVSYGDGSFSNGNLATETVTLGSTTGQAVALPGITFGCGTNNGG---LF-NSKTTGIVGLGGGDIS---- 230 (374)
Q Consensus 159 ~~C~~~~~~~~~~Y~~gs~~~G~~~~D~v~i~~~~~~~~~~~~~~fg~~~~~~~---~~-~~~~~GilGLg~~~~s---- 230 (374)
+.|.+.|++|+.. |.+++|+|+||+. +++ ..|+++....+ .+ ....|||||||++..+
T Consensus 195 -------~~f~i~Yg~Gsvs-G~~~~DtVtiG~~-----~v~-~qF~~~~~~~~f~~~~~~~~~DGILGLG~~~~S~~~~ 260 (453)
T PTZ00147 195 -------TKVEMNYVSGTVS-GFFSKDLVTIGNL-----SVP-YKFIEVTDTNGFEPFYTESDFDGIFGLGWKDLSIGSV 260 (453)
T ss_pred -------CEEEEEeCCCCEE-EEEEEEEEEECCE-----EEE-EEEEEEEeccCcccccccccccceecccCCccccccC
Confidence 8999999999865 9999999999986 776 57888876544 12 3578999999998764
Q ss_pred --hhHHhhhh-----------------------cCCc------------e----------e------cCCCCCcEEEecc
Q 017265 231 --LISQMRTT-----------------------IAGN------------Q----------R------LGVSTPDIVIDSG 257 (374)
Q Consensus 231 --~~~ql~~~-----------------------~~~~------------k----------~------~~~~~~~~iiDSG 257 (374)
++.+|..+ +|+. . . .......+|||||
T Consensus 261 ~p~~~~L~~qg~I~~~vFS~~L~~~~~~~G~L~fGGiD~~ky~G~l~y~pl~~~~~W~V~l~~~vg~~~~~~~~aIiDSG 340 (453)
T PTZ00147 261 DPYVVELKNQNKIEQAVFTFYLPPEDKHKGYLTIGGIEERFYEGPLTYEKLNHDLYWQVDLDVHFGNVSSEKANVIVDSG 340 (453)
T ss_pred CCHHHHHHHcCCCCccEEEEEecCCCCCCeEEEECCcChhhcCCceEEEEcCCCceEEEEEEEEECCEecCceeEEECCC
Confidence 23344321 1111 0 0 0112457999999
Q ss_pred ccccccCHhHHHHHHHHHHhhcccCccCCCCCCcccccccCCCCCcceEEEEEeCcEEEEcCceeEEEeC--CCeEEEE-
Q 017265 258 TTLTFLPQGYNSNLLSVMSSMIEAQPVADPTGSLELCYSFNSLSQVPEVTIHFRGADVKLSRSNFFVKVS--EDIVCSV- 334 (374)
Q Consensus 258 tt~~~lp~~~~~~i~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~P~i~f~f~g~~~~l~~~~~~~~~~--~~~~C~~- 334 (374)
|+++++|+++++++++++.... .. ..+.+ +.+|+.. .+|+|+|+|+|++++|+|++|+.+.. ....|+.
T Consensus 341 Tsli~lP~~~~~ai~~~l~~~~-~~--~~~~y-~~~C~~~----~lP~~~f~f~g~~~~L~p~~yi~~~~~~~~~~C~~~ 412 (453)
T PTZ00147 341 TSVITVPTEFLNKFVESLDVFK-VP--FLPLY-VTTCNNT----KLPTLEFRSPNKVYTLEPEYYLQPIEDIGSALCMLN 412 (453)
T ss_pred CchhcCCHHHHHHHHHHhCCee-cC--CCCeE-EEeCCCC----CCCeEEEEECCEEEEECHHHheeccccCCCcEEEEE
Confidence 9999999999999988875321 11 11222 4469852 68999999999999999999998643 2457986
Q ss_pred EEcCC--CCcceechhhhcceEEEEECCCCEEEEecCC
Q 017265 335 FKGIT--NSVPIYGNIMQTNFLVGYDIEQQTVSFKPTD 370 (374)
Q Consensus 335 i~~~~--~~~~ilG~~fl~~~y~vfD~~~~riGfa~~~ 370 (374)
|++.+ .+.||||++|||++|+|||++++|||||+++
T Consensus 413 i~~~~~~~~~~ILGd~FLr~~YtVFD~~n~rIGfA~a~ 450 (453)
T PTZ00147 413 IIPIDLEKNTFILGDPFMRKYFTVFDYDNHTVGFALAK 450 (453)
T ss_pred EEECCCCCCCEEECHHHhccEEEEEECCCCEEEEEEec
Confidence 87754 4579999999999999999999999999987
No 9
>cd05477 gastricsin Gastricsins, asparate proteases produced in gastric mucosa. Gastricsin is also called pepsinogen C. Gastricsins are produced in gastric mucosa of mammals. It is synthesized by the chief cells in the stomach as an inactive zymogen. It is self-converted to a mature enzyme under acidic conditions. Human gastricsin is distributed throughout all parts of the stomach. Gastricsin is synthesized as an inactive progastricsin that has an approximately 40 residue prosequence. It is self-converting to a mature enzyme being triggered by a drop in pH from neutrality to acidic conditions. Like other aspartic proteases, gastricsin are characterized by two catalytic aspartic residues at the active site, and display optimal activity at acidic pH. Mature enzyme has a pseudo-2-fold symmetry that passes through the active site between the catalytic aspartate residues. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic aspartate residue, with an exten
Probab=100.00 E-value=5.4e-45 Score=343.91 Aligned_cols=246 Identities=26% Similarity=0.470 Sum_probs=198.9
Q ss_pred CccEEEEEEecCCCceEEEEEEcCCCceeEecCCCCCCCCCCCCCCCCCCCCCCCccccCCCCccccCCCCCCCCCCcce
Q 017265 88 NANYLIRISIGTPPTERLAVADTGSDLIWTQCEPCPPSQCYMQDSPLFDPKMSSTYKSLPCSSSQCASLNQKSCSGVNCQ 167 (374)
Q Consensus 88 ~~~Y~~~i~iGtP~q~~~l~~DTGS~~~Wv~~~~c~~~~C~~~~~~~y~p~~SsT~~~~~c~~~~C~~~~~~~C~~~~~~ 167 (374)
|..|+++|.||||||++.|+|||||+++||+|..|....| ..++.|||++|+||+... +.
T Consensus 1 ~~~y~~~i~iGtP~q~~~v~~DTGS~~~wv~~~~C~~~~C--~~~~~f~~~~SsT~~~~~------------------~~ 60 (318)
T cd05477 1 DMSYYGEISIGTPPQNFLVLFDTGSSNLWVPSVLCQSQAC--TNHTKFNPSQSSTYSTNG------------------ET 60 (318)
T ss_pred CcEEEEEEEECCCCcEEEEEEeCCCccEEEccCCCCCccc--cccCCCCcccCCCceECC------------------cE
Confidence 5689999999999999999999999999999999985567 467899999999999876 89
Q ss_pred eeEeeCCCceeeeeEEEEEEEecCCCCCcccCCceEEeeeeeCCCC-c-CccccceeecCCCcc------hhhHHhhhh-
Q 017265 168 YSVSYGDGSFSNGNLATETVTLGSTTGQAVALPGITFGCGTNNGGL-F-NSKTTGIVGLGGGDI------SLISQMRTT- 238 (374)
Q Consensus 168 ~~~~Y~~gs~~~G~~~~D~v~i~~~~~~~~~~~~~~fg~~~~~~~~-~-~~~~~GilGLg~~~~------s~~~ql~~~- 238 (374)
|.+.|++|+.. |.+++|+|+|++. .++++.|||++...+. + ....+||||||++.. ++++||..+
T Consensus 61 ~~~~Yg~Gs~~-G~~~~D~i~~g~~-----~i~~~~Fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~~~~~~L~~~g 134 (318)
T cd05477 61 FSLQYGSGSLT-GIFGYDTVTVQGI-----IITNQEFGLSETEPGTNFVYAQFDGILGLAYPSISAGGATTVMQGMMQQN 134 (318)
T ss_pred EEEEECCcEEE-EEEEeeEEEECCE-----EEcCEEEEEEEecccccccccceeeEeecCcccccccCCCCHHHHHHhcC
Confidence 99999999875 9999999999986 8999999999986542 3 456899999998643 456665432
Q ss_pred -----------------------cCCc------------e---------------ec------CCCCCcEEEeccccccc
Q 017265 239 -----------------------IAGN------------Q---------------RL------GVSTPDIVIDSGTTLTF 262 (374)
Q Consensus 239 -----------------------~~~~------------k---------------~~------~~~~~~~iiDSGtt~~~ 262 (374)
||+. + .. ......+||||||++++
T Consensus 135 ~i~~~~FS~~L~~~~~~~~g~l~fGg~d~~~~~g~l~~~pv~~~~~w~v~l~~i~v~g~~~~~~~~~~~~iiDSGtt~~~ 214 (318)
T cd05477 135 LLQAPIFSFYLSGQQGQQGGELVFGGVDNNLYTGQIYWTPVTSETYWQIGIQGFQINGQATGWCSQGCQAIVDTGTSLLT 214 (318)
T ss_pred CcCCCEEEEEEcCCCCCCCCEEEEcccCHHHcCCceEEEecCCceEEEEEeeEEEECCEEecccCCCceeeECCCCccEE
Confidence 1111 0 00 11235699999999999
Q ss_pred cCHhHHHHHHHHHHhhcccCccCCCCCCcccccccCCCCCcceEEEEEeCcEEEEcCceeEEEeCCCeEEEE-EEcCC--
Q 017265 263 LPQGYNSNLLSVMSSMIEAQPVADPTGSLELCYSFNSLSQVPEVTIHFRGADVKLSRSNFFVKVSEDIVCSV-FKGIT-- 339 (374)
Q Consensus 263 lp~~~~~~i~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~P~i~f~f~g~~~~l~~~~~~~~~~~~~~C~~-i~~~~-- 339 (374)
+|++++++|++++..... ..+.+ ..+|+... .+|+|+|+|+|+++.||+++|+++. ...|+. |++..
T Consensus 215 lP~~~~~~l~~~~~~~~~----~~~~~-~~~C~~~~---~~p~l~~~f~g~~~~v~~~~y~~~~--~~~C~~~i~~~~~~ 284 (318)
T cd05477 215 APQQVMSTLMQSIGAQQD----QYGQY-VVNCNNIQ---NLPTLTFTINGVSFPLPPSAYILQN--NGYCTVGIEPTYLP 284 (318)
T ss_pred CCHHHHHHHHHHhCCccc----cCCCE-EEeCCccc---cCCcEEEEECCEEEEECHHHeEecC--CCeEEEEEEecccC
Confidence 999999999888765421 22333 34598654 6899999999999999999999875 458975 86431
Q ss_pred ----CCcceechhhhcceEEEEECCCCEEEEecC
Q 017265 340 ----NSVPIYGNIMQTNFLVGYDIEQQTVSFKPT 369 (374)
Q Consensus 340 ----~~~~ilG~~fl~~~y~vfD~~~~riGfa~~ 369 (374)
...||||+.|||++|+|||++++|||||++
T Consensus 285 ~~~~~~~~ilG~~fl~~~y~vfD~~~~~ig~a~~ 318 (318)
T cd05477 285 SQNGQPLWILGDVFLRQYYSVYDLGNNQVGFATA 318 (318)
T ss_pred CCCCCceEEEcHHHhhheEEEEeCCCCEEeeeeC
Confidence 246999999999999999999999999985
No 10
>cd05472 cnd41_like Chloroplast Nucleoids DNA-binding Protease, catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase. Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco. Antisense tobacco with reduced amount of CND41 maintained green leaves and constant protein levels, especially Rubisco. CND41 has DNA-binding as well as aspartic protease activities. The pepsin-like aspartic protease domain is located at the C-terminus of the protein. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. This fami
Probab=100.00 E-value=1e-44 Score=339.19 Aligned_cols=234 Identities=41% Similarity=0.807 Sum_probs=188.4
Q ss_pred cEEEEEEecCCCceEEEEEEcCCCceeEecCCCCCCCCCCCCCCCCCCCCCCCccccCCCCccccCCCCCCCCCCcceee
Q 017265 90 NYLIRISIGTPPTERLAVADTGSDLIWTQCEPCPPSQCYMQDSPLFDPKMSSTYKSLPCSSSQCASLNQKSCSGVNCQYS 169 (374)
Q Consensus 90 ~Y~~~i~iGtP~q~~~l~~DTGS~~~Wv~~~~c~~~~C~~~~~~~y~p~~SsT~~~~~c~~~~C~~~~~~~C~~~~~~~~ 169 (374)
+|+++|.||||||++.|+|||||+++||+|.+ | |.|.
T Consensus 1 ~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~c~~-----c--------------------------------------~~~~ 37 (299)
T cd05472 1 EYVVTVGLGTPARDQTVIVDTGSDLTWVQCQP-----C--------------------------------------CLYQ 37 (299)
T ss_pred CeEEEEecCCCCcceEEEecCCCCcccccCCC-----C--------------------------------------Ceee
Confidence 69999999999999999999999999997653 3 5689
Q ss_pred EeeCCCceeeeeEEEEEEEecCCCCCcccCCceEEeeeeeCCCCcCccccceeecCCCcchhhHHhhhh-----------
Q 017265 170 VSYGDGSFSNGNLATETVTLGSTTGQAVALPGITFGCGTNNGGLFNSKTTGIVGLGGGDISLISQMRTT----------- 238 (374)
Q Consensus 170 ~~Y~~gs~~~G~~~~D~v~i~~~~~~~~~~~~~~fg~~~~~~~~~~~~~~GilGLg~~~~s~~~ql~~~----------- 238 (374)
+.|++|+.++|.+++|+|+|++.. .++++.|||+....+.+ ...+||||||++..+++.|+..+
T Consensus 38 i~Yg~Gs~~~G~~~~D~v~ig~~~----~~~~~~Fg~~~~~~~~~-~~~~GilGLg~~~~s~~~ql~~~~~~~FS~~L~~ 112 (299)
T cd05472 38 VSYGDGSYTTGDLATDTLTLGSSD----VVPGFAFGCGHDNEGLF-GGAAGLLGLGRGKLSLPSQTASSYGGVFSYCLPD 112 (299)
T ss_pred eEeCCCceEEEEEEEEEEEeCCCC----ccCCEEEECCccCCCcc-CCCCEEEECCCCcchHHHHhhHhhcCceEEEccC
Confidence 999999987799999999999741 67899999999877655 47899999999999999886532
Q ss_pred ----------cCCc-------------e----------------e----cC-----CCCCcEEEeccccccccCHhHHHH
Q 017265 239 ----------IAGN-------------Q----------------R----LG-----VSTPDIVIDSGTTLTFLPQGYNSN 270 (374)
Q Consensus 239 ----------~~~~-------------k----------------~----~~-----~~~~~~iiDSGtt~~~lp~~~~~~ 270 (374)
||+. + . .. .....+||||||+++++|+++|++
T Consensus 113 ~~~~~~G~l~fGg~d~~~g~l~~~pv~~~~~~~~~y~v~l~~i~vg~~~~~~~~~~~~~~~~ivDSGTt~~~lp~~~~~~ 192 (299)
T cd05472 113 RSSSSSGYLSFGAAASVPAGASFTPMLSNPRVPTFYYVGLTGISVGGRRLPIPPASFGAGGVIIDSGTVITRLPPSAYAA 192 (299)
T ss_pred CCCCCCceEEeCCccccCCCceECCCccCCCCCCeEEEeeEEEEECCEECCCCccccCCCCeEEeCCCcceecCHHHHHH
Confidence 1111 0 0 00 123579999999999999999999
Q ss_pred HHHHHHhhcccCccCCCCCCcccccccCC--CCCcceEEEEEe-CcEEEEcCceeEEEe-CCCeEEEEEEcCC--CCcce
Q 017265 271 LLSVMSSMIEAQPVADPTGSLELCYSFNS--LSQVPEVTIHFR-GADVKLSRSNFFVKV-SEDIVCSVFKGIT--NSVPI 344 (374)
Q Consensus 271 i~~~~~~~~~~~~~~~~~~~~~~C~~~~~--~~~~P~i~f~f~-g~~~~l~~~~~~~~~-~~~~~C~~i~~~~--~~~~i 344 (374)
|.+++.+.+...........++.|+.... ...+|+|+|+|+ |++++|++++|+++. ..+..|+++.... ...||
T Consensus 193 l~~~l~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~f~f~~g~~~~l~~~~y~~~~~~~~~~C~~~~~~~~~~~~~i 272 (299)
T cd05472 193 LRDAFRAAMAAYPRAPGFSILDTCYDLSGFRSVSVPTVSLHFQGGADVELDASGVLYPVDDSSQVCLAFAGTSDDGGLSI 272 (299)
T ss_pred HHHHHHHHhccCCCCCCCCCCCccCcCCCCcCCccCCEEEEECCCCEEEeCcccEEEEecCCCCEEEEEeCCCCCCCCEE
Confidence 99999877543221122334556986532 237999999998 799999999999943 3467899876653 45799
Q ss_pred echhhhcceEEEEECCCCEEEEecCCC
Q 017265 345 YGNIMQTNFLVGYDIEQQTVSFKPTDC 371 (374)
Q Consensus 345 lG~~fl~~~y~vfD~~~~riGfa~~~C 371 (374)
||+.|||++|+|||++++|||||+++|
T Consensus 273 lG~~fl~~~~vvfD~~~~~igfa~~~C 299 (299)
T cd05472 273 IGNVQQQTFRVVYDVAGGRIGFAPGGC 299 (299)
T ss_pred EchHHccceEEEEECCCCEEeEecCCC
Confidence 999999999999999999999999999
No 11
>PTZ00013 plasmepsin 4 (PM4); Provisional
Probab=100.00 E-value=1.1e-44 Score=351.49 Aligned_cols=258 Identities=20% Similarity=0.392 Sum_probs=201.8
Q ss_pred CCcccccccCCccEEEEEEecCCCceEEEEEEcCCCceeEecCCCCCCCCCCCCCCCCCCCCCCCccccCCCCccccCCC
Q 017265 78 KASQADIIPNNANYLIRISIGTPPTERLAVADTGSDLIWTQCEPCPPSQCYMQDSPLFDPKMSSTYKSLPCSSSQCASLN 157 (374)
Q Consensus 78 ~~~~~~~~~~~~~Y~~~i~iGtP~q~~~l~~DTGS~~~Wv~~~~c~~~~C~~~~~~~y~p~~SsT~~~~~c~~~~C~~~~ 157 (374)
....++.++.+.+|+++|.||||+|++.|+|||||+++||+|..|....| +.++.|||++|+|++..+
T Consensus 126 ~~~~~l~d~~n~~Yy~~i~IGTP~Q~f~vi~DTGSsdlWV~s~~C~~~~C--~~~~~yd~s~SsT~~~~~---------- 193 (450)
T PTZ00013 126 NDVIELDDVANIMFYGEGEVGDNHQKFMLIFDTGSANLWVPSKKCDSIGC--SIKNLYDSSKSKSYEKDG---------- 193 (450)
T ss_pred CCceeeeccCCCEEEEEEEECCCCeEEEEEEeCCCCceEEecccCCcccc--ccCCCccCccCcccccCC----------
Confidence 34455667888999999999999999999999999999999999985567 567899999999999887
Q ss_pred CCCCCCCcceeeEeeCCCceeeeeEEEEEEEecCCCCCcccCCceEEeeeeeCCC---Cc-CccccceeecCCCcch---
Q 017265 158 QKSCSGVNCQYSVSYGDGSFSNGNLATETVTLGSTTGQAVALPGITFGCGTNNGG---LF-NSKTTGIVGLGGGDIS--- 230 (374)
Q Consensus 158 ~~~C~~~~~~~~~~Y~~gs~~~G~~~~D~v~i~~~~~~~~~~~~~~fg~~~~~~~---~~-~~~~~GilGLg~~~~s--- 230 (374)
+.|.+.|++|++ .|.+++|+|+||+. +++ ..|+++..... .+ ....|||||||++..+
T Consensus 194 --------~~~~i~YG~Gsv-~G~~~~Dtv~iG~~-----~~~-~~f~~~~~~~~~~~~~~~~~~dGIlGLg~~~~s~~~ 258 (450)
T PTZ00013 194 --------TKVDITYGSGTV-KGFFSKDLVTLGHL-----SMP-YKFIEVTDTDDLEPIYSSSEFDGILGLGWKDLSIGS 258 (450)
T ss_pred --------cEEEEEECCceE-EEEEEEEEEEECCE-----EEc-cEEEEEEeccccccceecccccceecccCCcccccc
Confidence 899999999985 59999999999986 666 57888776532 23 4578999999998664
Q ss_pred ---hhHHhhhh-----------------------cCCc------------ee----------c------CCCCCcEEEec
Q 017265 231 ---LISQMRTT-----------------------IAGN------------QR----------L------GVSTPDIVIDS 256 (374)
Q Consensus 231 ---~~~ql~~~-----------------------~~~~------------k~----------~------~~~~~~~iiDS 256 (374)
++.+|..+ +|+. .. . ......+||||
T Consensus 259 ~~p~~~~L~~qg~I~~~vFS~~L~~~~~~~G~L~fGGiD~~~y~G~L~y~pv~~~~yW~I~l~v~~G~~~~~~~~aIlDS 338 (450)
T PTZ00013 259 IDPIVVELKNQNKIDNALFTFYLPVHDVHAGYLTIGGIEEKFYEGNITYEKLNHDLYWQIDLDVHFGKQTMQKANVIVDS 338 (450)
T ss_pred CCCHHHHHHhccCcCCcEEEEEecCCCCCCCEEEECCcCccccccceEEEEcCcCceEEEEEEEEECceeccccceEECC
Confidence 34444321 1111 00 0 01235699999
Q ss_pred cccccccCHhHHHHHHHHHHhhcccCccCCCCCCcccccccCCCCCcceEEEEEeCcEEEEcCceeEEEeC--CCeEEEE
Q 017265 257 GTTLTFLPQGYNSNLLSVMSSMIEAQPVADPTGSLELCYSFNSLSQVPEVTIHFRGADVKLSRSNFFVKVS--EDIVCSV 334 (374)
Q Consensus 257 Gtt~~~lp~~~~~~i~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~P~i~f~f~g~~~~l~~~~~~~~~~--~~~~C~~ 334 (374)
||+++++|+++++++.+++.... .. ..+.+ ..+|+.. .+|+|+|+|+|.+++|+|++|+.+.. ++..|+.
T Consensus 339 GTSli~lP~~~~~~i~~~l~~~~-~~--~~~~y-~~~C~~~----~lP~i~F~~~g~~~~L~p~~Yi~~~~~~~~~~C~~ 410 (450)
T PTZ00013 339 GTTTITAPSEFLNKFFANLNVIK-VP--FLPFY-VTTCDNK----EMPTLEFKSANNTYTLEPEYYMNPLLDVDDTLCMI 410 (450)
T ss_pred CCccccCCHHHHHHHHHHhCCee-cC--CCCeE-EeecCCC----CCCeEEEEECCEEEEECHHHheehhccCCCCeeEE
Confidence 99999999999999988775321 11 12223 4469752 68999999999999999999987532 3468986
Q ss_pred -EEcCC--CCcceechhhhcceEEEEECCCCEEEEecCC
Q 017265 335 -FKGIT--NSVPIYGNIMQTNFLVGYDIEQQTVSFKPTD 370 (374)
Q Consensus 335 -i~~~~--~~~~ilG~~fl~~~y~vfD~~~~riGfa~~~ 370 (374)
+.+.+ .+.||||++|||++|+|||++++|||||+++
T Consensus 411 ~i~~~~~~~~~~ILGd~FLr~~Y~VFD~~n~rIGfA~a~ 449 (450)
T PTZ00013 411 TMLPVDIDDNTFILGDPFMRKYFTVFDYDKESVGFAIAK 449 (450)
T ss_pred EEEECCCCCCCEEECHHHhccEEEEEECCCCEEEEEEeC
Confidence 77653 4579999999999999999999999999975
No 12
>cd06098 phytepsin Phytepsin, a plant homolog of mammalian lysosomal pepsins. Phytepsin, a plant homolog of mammalian lysosomal pepsins, resides in grains, roots, stems, leaves and flowers. Phytepsin may participate in metabolic turnover and in protein processing events. In addition, it highly expressed in several plant tissues undergoing apoptosis. Phytepsin contains an internal region consisting of about 100 residues not present in animal or microbial pepsins. This region is thus called a plant specific insert. The insert is highly similar to saponins, which are lysosomal sphingolipid-activating proteins in mammalian cells. The saponin-like domain may have a role in the vacuolar targeting of phytepsin. Phytepsin, as its animal counterparts, possesses a topology typical of all aspartic proteases. They are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe has probably evolved fro
Probab=100.00 E-value=5.8e-45 Score=343.26 Aligned_cols=240 Identities=28% Similarity=0.439 Sum_probs=193.2
Q ss_pred ccccCCccEEEEEEecCCCceEEEEEEcCCCceeEecCCCC-CCCCCCCCCCCCCCCCCCCccccCCCCccccCCCCCCC
Q 017265 83 DIIPNNANYLIRISIGTPPTERLAVADTGSDLIWTQCEPCP-PSQCYMQDSPLFDPKMSSTYKSLPCSSSQCASLNQKSC 161 (374)
Q Consensus 83 ~~~~~~~~Y~~~i~iGtP~q~~~l~~DTGS~~~Wv~~~~c~-~~~C~~~~~~~y~p~~SsT~~~~~c~~~~C~~~~~~~C 161 (374)
+.++.+.+|+++|.||||+|++.|+|||||+++||+|..|. ...|. .++.|||++|+|++..+
T Consensus 3 l~n~~~~~Y~~~i~iGtP~Q~~~v~~DTGSs~lWv~~~~C~~~~~C~--~~~~y~~~~SsT~~~~~-------------- 66 (317)
T cd06098 3 LKNYLDAQYFGEIGIGTPPQKFTVIFDTGSSNLWVPSSKCYFSIACY--FHSKYKSSKSSTYKKNG-------------- 66 (317)
T ss_pred ccccCCCEEEEEEEECCCCeEEEEEECCCccceEEecCCCCCCcccc--ccCcCCcccCCCcccCC--------------
Confidence 45778999999999999999999999999999999999995 23684 57899999999999876
Q ss_pred CCCcceeeEeeCCCceeeeeEEEEEEEecCCCCCcccCCceEEeeeeeCCC-Cc-CccccceeecCCCcchh------hH
Q 017265 162 SGVNCQYSVSYGDGSFSNGNLATETVTLGSTTGQAVALPGITFGCGTNNGG-LF-NSKTTGIVGLGGGDISL------IS 233 (374)
Q Consensus 162 ~~~~~~~~~~Y~~gs~~~G~~~~D~v~i~~~~~~~~~~~~~~fg~~~~~~~-~~-~~~~~GilGLg~~~~s~------~~ 233 (374)
..+.+.|++|+.. |.+++|+|+|++. .++++.||+++...+ .| ....+||||||++..+. +.
T Consensus 67 ----~~~~i~Yg~G~~~-G~~~~D~v~ig~~-----~v~~~~f~~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~ 136 (317)
T cd06098 67 ----TSASIQYGTGSIS-GFFSQDSVTVGDL-----VVKNQVFIEATKEPGLTFLLAKFDGILGLGFQEISVGKAVPVWY 136 (317)
T ss_pred ----CEEEEEcCCceEE-EEEEeeEEEECCE-----EECCEEEEEEEecCCccccccccceeccccccchhhcCCCCHHH
Confidence 8899999999875 9999999999987 899999999987654 34 56789999999976542 22
Q ss_pred Hhhhh-------------------------cCCc---------------------------eec------CCCCCcEEEe
Q 017265 234 QMRTT-------------------------IAGN---------------------------QRL------GVSTPDIVID 255 (374)
Q Consensus 234 ql~~~-------------------------~~~~---------------------------k~~------~~~~~~~iiD 255 (374)
+|.++ ||+. +.. ......+|||
T Consensus 137 ~l~~qg~i~~~~FS~~L~~~~~~~~~G~l~fGg~d~~~~~g~l~~~pv~~~~~w~v~l~~i~v~g~~~~~~~~~~~aivD 216 (317)
T cd06098 137 NMVEQGLVKEPVFSFWLNRNPDEEEGGELVFGGVDPKHFKGEHTYVPVTRKGYWQFEMGDVLIGGKSTGFCAGGCAAIAD 216 (317)
T ss_pred HHHhcCCCCCCEEEEEEecCCCCCCCcEEEECccChhhcccceEEEecCcCcEEEEEeCeEEECCEEeeecCCCcEEEEe
Confidence 22211 1111 000 0123569999
Q ss_pred ccccccccCHhHHHHHHHHHHhhcccCccCCCCCCcccccccCCCCCcceEEEEEeCcEEEEcCceeEEEeCC--CeEEE
Q 017265 256 SGTTLTFLPQGYNSNLLSVMSSMIEAQPVADPTGSLELCYSFNSLSQVPEVTIHFRGADVKLSRSNFFVKVSE--DIVCS 333 (374)
Q Consensus 256 SGtt~~~lp~~~~~~i~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~P~i~f~f~g~~~~l~~~~~~~~~~~--~~~C~ 333 (374)
|||+++++|++++++|. +.+ +|+... .+|+|+|+|+|+.++|+|++|+++..+ ...|+
T Consensus 217 TGTs~~~lP~~~~~~i~----------------~~~-~C~~~~---~~P~i~f~f~g~~~~l~~~~yi~~~~~~~~~~C~ 276 (317)
T cd06098 217 SGTSLLAGPTTIVTQIN----------------SAV-DCNSLS---SMPNVSFTIGGKTFELTPEQYILKVGEGAAAQCI 276 (317)
T ss_pred cCCcceeCCHHHHHhhh----------------ccC-Cccccc---cCCcEEEEECCEEEEEChHHeEEeecCCCCCEEe
Confidence 99999999998877662 223 498654 789999999999999999999987543 45898
Q ss_pred E-EEcCC-----CCcceechhhhcceEEEEECCCCEEEEec
Q 017265 334 V-FKGIT-----NSVPIYGNIMQTNFLVGYDIEQQTVSFKP 368 (374)
Q Consensus 334 ~-i~~~~-----~~~~ilG~~fl~~~y~vfD~~~~riGfa~ 368 (374)
+ |+..+ ...||||++|||++|+|||++++|||||+
T Consensus 277 ~~~~~~~~~~~~~~~~IlGd~Flr~~y~VfD~~~~~iGfA~ 317 (317)
T cd06098 277 SGFTALDVPPPRGPLWILGDVFMGAYHTVFDYGNLRVGFAE 317 (317)
T ss_pred ceEEECCCCCCCCCeEEechHHhcccEEEEeCCCCEEeecC
Confidence 7 76432 34799999999999999999999999996
No 13
>cd05485 Cathepsin_D_like Cathepsin_D_like, pepsin family of proteinases. Cathepsin D is the major aspartic proteinase of the lysosomal compartment where it functions in protein catabolism. It is a member of the pepsin family of proteinases. This enzyme is distinguished from other members of the pepsin family by two features that are characteristic of lysosomal hydrolases. First, mature Cathepsin D is found predominantly in a two-chain form due to a posttranslational cleavage event. Second, it contains phosphorylated, N-linked oligosaccharides that target the enzyme to lysosomes via mannose-6-phosphate receptors. Cathepsin D preferentially attacks peptide bonds flanked by bulky hydrophobic amino acids and its pH optimum is between pH 2.8 and 4.0. Two active site aspartic acid residues are essential for the catalytic activity of aspartic proteinases. Like other aspartic proteinases, Cathepsin D is a bilobed molecule; the two evolutionary related lobes are mostly made up of beta-sheets an
Probab=100.00 E-value=7.8e-45 Score=344.00 Aligned_cols=253 Identities=28% Similarity=0.491 Sum_probs=201.6
Q ss_pred cccccCCccEEEEEEecCCCceEEEEEEcCCCceeEecCCCCC--CCCCCCCCCCCCCCCCCCccccCCCCccccCCCCC
Q 017265 82 ADIIPNNANYLIRISIGTPPTERLAVADTGSDLIWTQCEPCPP--SQCYMQDSPLFDPKMSSTYKSLPCSSSQCASLNQK 159 (374)
Q Consensus 82 ~~~~~~~~~Y~~~i~iGtP~q~~~l~~DTGS~~~Wv~~~~c~~--~~C~~~~~~~y~p~~SsT~~~~~c~~~~C~~~~~~ 159 (374)
.+.++.+.+|+++|.||||+|++.|++||||+++||+|..|.. ..| ..++.|||++|+|++...
T Consensus 3 ~~~n~~~~~Y~~~i~vGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~~~c--~~~~~y~~~~Sst~~~~~------------ 68 (329)
T cd05485 3 PLSNYMDAQYYGVITIGTPPQSFKVVFDTGSSNLWVPSKKCSWTNIAC--LLHNKYDSTKSSTYKKNG------------ 68 (329)
T ss_pred cceeccCCeEEEEEEECCCCcEEEEEEcCCCccEEEecCCCCCCCccc--cCCCeECCcCCCCeEECC------------
Confidence 4557889999999999999999999999999999999999962 246 356889999999999876
Q ss_pred CCCCCcceeeEeeCCCceeeeeEEEEEEEecCCCCCcccCCceEEeeeeeCCC-Cc-CccccceeecCCCcchh------
Q 017265 160 SCSGVNCQYSVSYGDGSFSNGNLATETVTLGSTTGQAVALPGITFGCGTNNGG-LF-NSKTTGIVGLGGGDISL------ 231 (374)
Q Consensus 160 ~C~~~~~~~~~~Y~~gs~~~G~~~~D~v~i~~~~~~~~~~~~~~fg~~~~~~~-~~-~~~~~GilGLg~~~~s~------ 231 (374)
+.|.+.|++|+. .|.+++|+|+|++. .++++.||++....+ .+ ....+||||||++..+.
T Consensus 69 ------~~~~i~Y~~g~~-~G~~~~D~v~ig~~-----~~~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~p~ 136 (329)
T cd05485 69 ------TEFAIQYGSGSL-SGFLSTDTVSVGGV-----SVKGQTFAEAINEPGLTFVAAKFDGILGMGYSSISVDGVVPV 136 (329)
T ss_pred ------eEEEEEECCceE-EEEEecCcEEECCE-----EECCEEEEEEEecCCccccccccceEEEcCCccccccCCCCH
Confidence 899999999985 59999999999986 889999999987655 34 45789999999987652
Q ss_pred hHHhhhh-------------------------cCCc----------------------e-----e----cCCCCCcEEEe
Q 017265 232 ISQMRTT-------------------------IAGN----------------------Q-----R----LGVSTPDIVID 255 (374)
Q Consensus 232 ~~ql~~~-------------------------~~~~----------------------k-----~----~~~~~~~~iiD 255 (374)
+.||..+ ||+. + . .......+|||
T Consensus 137 ~~~l~~qg~i~~~~FS~~l~~~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~~~~~~~v~~~~i~v~~~~~~~~~~~~iiD 216 (329)
T cd05485 137 FYNMVNQKLVDAPVFSFYLNRDPSAKEGGELILGGSDPKHYTGNFTYLPVTRKGYWQFKMDSVSVGEGEFCSGGCQAIAD 216 (329)
T ss_pred HHHHHhCCCCCCCEEEEEecCCCCCCCCcEEEEcccCHHHcccceEEEEcCCceEEEEEeeEEEECCeeecCCCcEEEEc
Confidence 2333221 1111 0 0 01233469999
Q ss_pred ccccccccCHhHHHHHHHHHHhhcccCccCCCCCCcccccccCCCCCcceEEEEEeCcEEEEcCceeEEEeCC--CeEEE
Q 017265 256 SGTTLTFLPQGYNSNLLSVMSSMIEAQPVADPTGSLELCYSFNSLSQVPEVTIHFRGADVKLSRSNFFVKVSE--DIVCS 333 (374)
Q Consensus 256 SGtt~~~lp~~~~~~i~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~P~i~f~f~g~~~~l~~~~~~~~~~~--~~~C~ 333 (374)
|||+++++|++++++|.+++... ......+. .+|+... .+|+|+|+|+|+++.|++++|+++... ...|+
T Consensus 217 SGtt~~~lP~~~~~~l~~~~~~~----~~~~~~~~-~~C~~~~---~~p~i~f~fgg~~~~i~~~~yi~~~~~~~~~~C~ 288 (329)
T cd05485 217 TGTSLIAGPVDEIEKLNNAIGAK----PIIGGEYM-VNCSAIP---SLPDITFVLGGKSFSLTGKDYVLKVTQMGQTICL 288 (329)
T ss_pred cCCcceeCCHHHHHHHHHHhCCc----cccCCcEE-Eeccccc---cCCcEEEEECCEEeEEChHHeEEEecCCCCCEEe
Confidence 99999999999999998877542 22223343 3598654 689999999999999999999998643 46898
Q ss_pred E-EEcCC-----CCcceechhhhcceEEEEECCCCEEEEec
Q 017265 334 V-FKGIT-----NSVPIYGNIMQTNFLVGYDIEQQTVSFKP 368 (374)
Q Consensus 334 ~-i~~~~-----~~~~ilG~~fl~~~y~vfD~~~~riGfa~ 368 (374)
. |+... .+.||||++|||++|+|||++++|||||+
T Consensus 289 ~~~~~~~~~~~~~~~~IlG~~fl~~~y~vFD~~~~~ig~a~ 329 (329)
T cd05485 289 SGFMGIDIPPPAGPLWILGDVFIGKYYTEFDLGNNRVGFAT 329 (329)
T ss_pred eeEEECcCCCCCCCeEEEchHHhccceEEEeCCCCEEeecC
Confidence 7 77532 35799999999999999999999999985
No 14
>cd05487 renin_like Renin stimulates production of angiotensin and thus affects blood pressure. Renin, also known as angiotensinogenase, is a circulating enzyme that participates in the renin-angiotensin system that mediates extracellular volume, arterial vasoconstriction, and consequently mean arterial blood pressure. The enzyme is secreted by the kidneys from specialized juxtaglomerular cells in response to decreases in glomerular filtration rate (a consequence of low blood volume), diminished filtered sodium chloride and sympathetic nervous system innervation. The enzyme circulates in the blood stream and hydrolyzes angiotensinogen secreted from the liver into the peptide angiotensin I. Angiotensin I is further cleaved in the lungs by endothelial bound angiotensin converting enzyme (ACE) into angiotensin II, the final active peptide. Renin is a member of the aspartic protease family. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Aspartate r
Probab=100.00 E-value=8e-45 Score=343.74 Aligned_cols=249 Identities=25% Similarity=0.464 Sum_probs=197.4
Q ss_pred ccCCccEEEEEEecCCCceEEEEEEcCCCceeEecCCCCC--CCCCCCCCCCCCCCCCCCccccCCCCccccCCCCCCCC
Q 017265 85 IPNNANYLIRISIGTPPTERLAVADTGSDLIWTQCEPCPP--SQCYMQDSPLFDPKMSSTYKSLPCSSSQCASLNQKSCS 162 (374)
Q Consensus 85 ~~~~~~Y~~~i~iGtP~q~~~l~~DTGS~~~Wv~~~~c~~--~~C~~~~~~~y~p~~SsT~~~~~c~~~~C~~~~~~~C~ 162 (374)
++.+.+|+++|.||||+|+++|+|||||+++||++..|.. ..| ..++.|+|++|+|++...
T Consensus 3 ~~~~~~y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~~~c--~~~~~y~~~~SsT~~~~~--------------- 65 (326)
T cd05487 3 NYLDTQYYGEIGIGTPPQTFKVVFDTGSSNLWVPSSKCSPLYTAC--VTHNLYDASDSSTYKENG--------------- 65 (326)
T ss_pred ccCCCeEEEEEEECCCCcEEEEEEeCCccceEEccCCCcCcchhh--cccCcCCCCCCeeeeECC---------------
Confidence 5678999999999999999999999999999999998872 245 467899999999999876
Q ss_pred CCcceeeEeeCCCceeeeeEEEEEEEecCCCCCcccCCceEEeeeeeCCC-Cc-CccccceeecCCCcch------hhHH
Q 017265 163 GVNCQYSVSYGDGSFSNGNLATETVTLGSTTGQAVALPGITFGCGTNNGG-LF-NSKTTGIVGLGGGDIS------LISQ 234 (374)
Q Consensus 163 ~~~~~~~~~Y~~gs~~~G~~~~D~v~i~~~~~~~~~~~~~~fg~~~~~~~-~~-~~~~~GilGLg~~~~s------~~~q 234 (374)
|.|.+.|++|++ .|.+++|+|+|++. .+ .+.||++..... .+ ....+||||||++..+ ++.+
T Consensus 66 ---~~~~~~Yg~g~~-~G~~~~D~v~~g~~-----~~-~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~ 135 (326)
T cd05487 66 ---TEFTIHYASGTV-KGFLSQDIVTVGGI-----PV-TQMFGEVTALPAIPFMLAKFDGVLGMGYPKQAIGGVTPVFDN 135 (326)
T ss_pred ---EEEEEEeCCceE-EEEEeeeEEEECCE-----Ee-eEEEEEEEeccCCccceeecceEEecCChhhcccCCCCHHHH
Confidence 899999999985 59999999999985 55 478999987643 33 4578999999997654 2222
Q ss_pred hhhh-------------------------cCCc---------------------------ee-----cCCCCCcEEEecc
Q 017265 235 MRTT-------------------------IAGN---------------------------QR-----LGVSTPDIVIDSG 257 (374)
Q Consensus 235 l~~~-------------------------~~~~---------------------------k~-----~~~~~~~~iiDSG 257 (374)
|..+ ||+. +. .......+|||||
T Consensus 136 L~~qg~i~~~~FS~~L~~~~~~~~~G~l~fGg~d~~~y~g~l~~~~~~~~~~w~v~l~~i~vg~~~~~~~~~~~aiiDSG 215 (326)
T cd05487 136 IMSQGVLKEDVFSVYYSRDSSHSLGGEIVLGGSDPQHYQGDFHYINTSKTGFWQIQMKGVSVGSSTLLCEDGCTAVVDTG 215 (326)
T ss_pred HHhcCCCCCCEEEEEEeCCCCCCCCcEEEECCcChhhccCceEEEECCcCceEEEEecEEEECCEEEecCCCCEEEECCC
Confidence 2211 1111 00 0123457999999
Q ss_pred ccccccCHhHHHHHHHHHHhhcccCccCCCCCCcccccccCCCCCcceEEEEEeCcEEEEcCceeEEEeCC--CeEEEE-
Q 017265 258 TTLTFLPQGYNSNLLSVMSSMIEAQPVADPTGSLELCYSFNSLSQVPEVTIHFRGADVKLSRSNFFVKVSE--DIVCSV- 334 (374)
Q Consensus 258 tt~~~lp~~~~~~i~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~P~i~f~f~g~~~~l~~~~~~~~~~~--~~~C~~- 334 (374)
|+++++|+++++++++++.... . ...+ ..+|+... .+|+|+|+|+|+.++|++++|+++..+ +..|+.
T Consensus 216 ts~~~lP~~~~~~l~~~~~~~~----~-~~~y-~~~C~~~~---~~P~i~f~fgg~~~~v~~~~yi~~~~~~~~~~C~~~ 286 (326)
T cd05487 216 ASFISGPTSSISKLMEALGAKE----R-LGDY-VVKCNEVP---TLPDISFHLGGKEYTLSSSDYVLQDSDFSDKLCTVA 286 (326)
T ss_pred ccchhCcHHHHHHHHHHhCCcc----c-CCCE-EEeccccC---CCCCEEEEECCEEEEeCHHHhEEeccCCCCCEEEEE
Confidence 9999999999999988875431 1 2333 34598654 689999999999999999999998643 568986
Q ss_pred EEcCC-----CCcceechhhhcceEEEEECCCCEEEEecC
Q 017265 335 FKGIT-----NSVPIYGNIMQTNFLVGYDIEQQTVSFKPT 369 (374)
Q Consensus 335 i~~~~-----~~~~ilG~~fl~~~y~vfD~~~~riGfa~~ 369 (374)
|+..+ .+.||||++|||++|+|||++++|||||++
T Consensus 287 ~~~~~~~~~~~~~~ilG~~flr~~y~vfD~~~~~IGfA~a 326 (326)
T cd05487 287 FHAMDIPPPTGPLWVLGATFIRKFYTEFDRQNNRIGFALA 326 (326)
T ss_pred EEeCCCCCCCCCeEEEehHHhhccEEEEeCCCCEEeeeeC
Confidence 77532 357999999999999999999999999985
No 15
>cd05488 Proteinase_A_fungi Fungal Proteinase A , aspartic proteinase superfamily. Fungal Proteinase A, a proteolytic enzyme distributed among a variety of organisms, is a member of the aspartic proteinase superfamily. In Saccharomyces cerevisiae, targeted to the vacuole as a zymogen, activation of proteinases A at acidic pH can occur by two different pathways: a one-step process to release mature proteinase A, involving the intervention of proteinase B, or a step-wise pathway via the auto-activation product known as pseudo-proteinase A. Once active, S. cerevisiae proteinase A is essential to the activities of other yeast vacuolar hydrolases, including proteinase B and carboxypeptidase Y. The mature enzyme is bilobal, with each lobe providing one of the two catalytically essential aspartic acid residues in the active site. The crystal structure of free proteinase A shows that flap loop is atypically pointing directly into the S(1) pocket of the enzyme. Proteinase A preferentially hydro
Probab=100.00 E-value=9.3e-45 Score=342.41 Aligned_cols=250 Identities=27% Similarity=0.483 Sum_probs=199.5
Q ss_pred ccccCCccEEEEEEecCCCceEEEEEEcCCCceeEecCCCCCCCCCCCCCCCCCCCCCCCccccCCCCccccCCCCCCCC
Q 017265 83 DIIPNNANYLIRISIGTPPTERLAVADTGSDLIWTQCEPCPPSQCYMQDSPLFDPKMSSTYKSLPCSSSQCASLNQKSCS 162 (374)
Q Consensus 83 ~~~~~~~~Y~~~i~iGtP~q~~~l~~DTGS~~~Wv~~~~c~~~~C~~~~~~~y~p~~SsT~~~~~c~~~~C~~~~~~~C~ 162 (374)
+.++.+.+|+++|.||||+|++.|+|||||+++||+|..|....|. .++.|+|++|+|++...
T Consensus 3 l~n~~~~~Y~~~i~iGtp~q~~~v~~DTGSs~~wv~~~~C~~~~C~--~~~~y~~~~Sst~~~~~--------------- 65 (320)
T cd05488 3 LTNYLNAQYFTDITLGTPPQKFKVILDTGSSNLWVPSVKCGSIACF--LHSKYDSSASSTYKANG--------------- 65 (320)
T ss_pred ccccCCCEEEEEEEECCCCcEEEEEEecCCcceEEEcCCCCCcccC--CcceECCCCCcceeeCC---------------
Confidence 3456788999999999999999999999999999999999855674 56799999999999876
Q ss_pred CCcceeeEeeCCCceeeeeEEEEEEEecCCCCCcccCCceEEeeeeeCCCC-c-CccccceeecCCCcchhhH------H
Q 017265 163 GVNCQYSVSYGDGSFSNGNLATETVTLGSTTGQAVALPGITFGCGTNNGGL-F-NSKTTGIVGLGGGDISLIS------Q 234 (374)
Q Consensus 163 ~~~~~~~~~Y~~gs~~~G~~~~D~v~i~~~~~~~~~~~~~~fg~~~~~~~~-~-~~~~~GilGLg~~~~s~~~------q 234 (374)
|.|.+.|++|+. .|.+++|+|+|++. .++++.|||++...+. + ....+||||||++..+... +
T Consensus 66 ---~~~~~~y~~g~~-~G~~~~D~v~ig~~-----~~~~~~f~~a~~~~g~~~~~~~~dGilGLg~~~~s~~~~~~~~~~ 136 (320)
T cd05488 66 ---TEFKIQYGSGSL-EGFVSQDTLSIGDL-----TIKKQDFAEATSEPGLAFAFGKFDGILGLAYDTISVNKIVPPFYN 136 (320)
T ss_pred ---CEEEEEECCceE-EEEEEEeEEEECCE-----EECCEEEEEEecCCCcceeeeeeceEEecCCccccccCCCCHHHH
Confidence 899999999986 59999999999986 8899999999877653 3 4568999999998765332 1
Q ss_pred hhhh-----------------------cCCc---------------------------ee----cCCCCCcEEEeccccc
Q 017265 235 MRTT-----------------------IAGN---------------------------QR----LGVSTPDIVIDSGTTL 260 (374)
Q Consensus 235 l~~~-----------------------~~~~---------------------------k~----~~~~~~~~iiDSGtt~ 260 (374)
|..+ ||+. +. .......++|||||++
T Consensus 137 l~~qg~i~~~~FS~~L~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~~~~~w~v~l~~i~vg~~~~~~~~~~~ivDSGtt~ 216 (320)
T cd05488 137 MINQGLLDEPVFSFYLGSSEEDGGEATFGGIDESRFTGKITWLPVRRKAYWEVELEKIGLGDEELELENTGAAIDTGTSL 216 (320)
T ss_pred HHhcCCCCCCEEEEEecCCCCCCcEEEECCcCHHHcCCceEEEeCCcCcEEEEEeCeEEECCEEeccCCCeEEEcCCccc
Confidence 1110 1111 00 1123467999999999
Q ss_pred cccCHhHHHHHHHHHHhhcccCccCCCCCCcccccccCCCCCcceEEEEEeCcEEEEcCceeEEEeCCCeEEEE-EEcCC
Q 017265 261 TFLPQGYNSNLLSVMSSMIEAQPVADPTGSLELCYSFNSLSQVPEVTIHFRGADVKLSRSNFFVKVSEDIVCSV-FKGIT 339 (374)
Q Consensus 261 ~~lp~~~~~~i~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~P~i~f~f~g~~~~l~~~~~~~~~~~~~~C~~-i~~~~ 339 (374)
+++|++++++|.+++... ....+.+.+ +|+... .+|+|+|+|+|+++.||+++|+++.. ..|++ +....
T Consensus 217 ~~lp~~~~~~l~~~~~~~----~~~~~~~~~-~C~~~~---~~P~i~f~f~g~~~~i~~~~y~~~~~--g~C~~~~~~~~ 286 (320)
T cd05488 217 IALPSDLAEMLNAEIGAK----KSWNGQYTV-DCSKVD---SLPDLTFNFDGYNFTLGPFDYTLEVS--GSCISAFTGMD 286 (320)
T ss_pred ccCCHHHHHHHHHHhCCc----cccCCcEEe-eccccc---cCCCEEEEECCEEEEECHHHheecCC--CeEEEEEEECc
Confidence 999999999997776432 222333434 598654 78999999999999999999998643 47987 66532
Q ss_pred -----CCcceechhhhcceEEEEECCCCEEEEec
Q 017265 340 -----NSVPIYGNIMQTNFLVGYDIEQQTVSFKP 368 (374)
Q Consensus 340 -----~~~~ilG~~fl~~~y~vfD~~~~riGfa~ 368 (374)
...||||++|||++|+|||++++|||||+
T Consensus 287 ~~~~~~~~~ilG~~fl~~~y~vfD~~~~~iG~a~ 320 (320)
T cd05488 287 FPEPVGPLAIVGDAFLRKYYSVYDLGNNAVGLAK 320 (320)
T ss_pred CCCCCCCeEEEchHHhhheEEEEeCCCCEEeecC
Confidence 34799999999999999999999999996
No 16
>cd05473 beta_secretase_like Beta-secretase, aspartic-acid protease important in the pathogenesis of Alzheimer's disease. Beta-secretase also called BACE (beta-site of APP cleaving enzyme) or memapsin-2. Beta-secretase is an aspartic-acid protease important in the pathogenesis of Alzheimer's disease, and in the formation of myelin sheaths in peripheral nerve cells. It cleaves amyloid precursor protein (APP) to reveal the N-terminus of the beta-amyloid peptides. The beta-amyloid peptides are the major components of the amyloid plaques formed in the brain of patients with Alzheimer's disease (AD). Since BACE mediates one of the cleavages responsible for generation of AD, it is regarded as a potential target for pharmacological intervention in AD. Beta-secretase is a member of pepsin family of aspartic proteases. Same as other aspartic proteases, beta-secretase is a bilobal enzyme, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two
Probab=100.00 E-value=1e-42 Score=334.07 Aligned_cols=258 Identities=24% Similarity=0.387 Sum_probs=189.4
Q ss_pred ccEEEEEEecCCCceEEEEEEcCCCceeEecCCCCCCCCCCCCCCCCCCCCCCCccccCCCCccccCCCCCCCCCCccee
Q 017265 89 ANYLIRISIGTPPTERLAVADTGSDLIWTQCEPCPPSQCYMQDSPLFDPKMSSTYKSLPCSSSQCASLNQKSCSGVNCQY 168 (374)
Q Consensus 89 ~~Y~~~i~iGtP~q~~~l~~DTGS~~~Wv~~~~c~~~~C~~~~~~~y~p~~SsT~~~~~c~~~~C~~~~~~~C~~~~~~~ 168 (374)
.+|+++|.||||+|++.|+|||||+++||+|..|. +.++.|||++|+|++..+ |.|
T Consensus 2 ~~Y~~~i~iGtP~Q~~~v~~DTGSs~lWv~~~~~~------~~~~~f~~~~SsT~~~~~------------------~~~ 57 (364)
T cd05473 2 QGYYIEMLIGTPPQKLNILVDTGSSNFAVAAAPHP------FIHTYFHRELSSTYRDLG------------------KGV 57 (364)
T ss_pred CceEEEEEecCCCceEEEEEecCCcceEEEcCCCc------cccccCCchhCcCcccCC------------------ceE
Confidence 47999999999999999999999999999998774 346789999999999987 899
Q ss_pred eEeeCCCceeeeeEEEEEEEecCCCCCcccCCceEEeeeeeCCCCc--CccccceeecCCCcch------------hhHH
Q 017265 169 SVSYGDGSFSNGNLATETVTLGSTTGQAVALPGITFGCGTNNGGLF--NSKTTGIVGLGGGDIS------------LISQ 234 (374)
Q Consensus 169 ~~~Y~~gs~~~G~~~~D~v~i~~~~~~~~~~~~~~fg~~~~~~~~~--~~~~~GilGLg~~~~s------------~~~q 234 (374)
.+.|++|+.. |.+++|+|+|++... ....+.|++.....+.+ ....|||||||++.++ +.+|
T Consensus 58 ~i~Yg~Gs~~-G~~~~D~v~ig~~~~---~~~~~~~~~~~~~~~~~~~~~~~dGIlGLg~~~l~~~~~~~~~~~~~l~~q 133 (364)
T cd05473 58 TVPYTQGSWE-GELGTDLVSIPKGPN---VTFRANIAAITESENFFLNGSNWEGILGLAYAELARPDSSVEPFFDSLVKQ 133 (364)
T ss_pred EEEECcceEE-EEEEEEEEEECCCCc---cceEEeeEEEeccccceecccccceeeeecccccccCCCCCCCHHHHHHhc
Confidence 9999999875 999999999986310 11123355665544433 2368999999997652 3333
Q ss_pred hhh--h-------------------------cCCc---------------------------eec----C--C---CCCc
Q 017265 235 MRT--T-------------------------IAGN---------------------------QRL----G--V---STPD 251 (374)
Q Consensus 235 l~~--~-------------------------~~~~---------------------------k~~----~--~---~~~~ 251 (374)
... . ||+. +.. . . ....
T Consensus 134 ~~~~~~FS~~l~~~~~~~~~~~~~~~~g~l~fGg~D~~~~~g~l~~~p~~~~~~~~v~l~~i~vg~~~~~~~~~~~~~~~ 213 (364)
T cd05473 134 TGIPDVFSLQMCGAGLPVNGSASGTVGGSMVIGGIDPSLYKGDIWYTPIREEWYYEVIILKLEVGGQSLNLDCKEYNYDK 213 (364)
T ss_pred cCCccceEEEecccccccccccccCCCcEEEeCCcCHhhcCCCceEEecCcceeEEEEEEEEEECCEecccccccccCcc
Confidence 110 0 1111 000 0 0 1236
Q ss_pred EEEeccccccccCHhHHHHHHHHHHhhcccCccCCC--CCCcccccccCCC--CCcceEEEEEeC------cEEEEcCce
Q 017265 252 IVIDSGTTLTFLPQGYNSNLLSVMSSMIEAQPVADP--TGSLELCYSFNSL--SQVPEVTIHFRG------ADVKLSRSN 321 (374)
Q Consensus 252 ~iiDSGtt~~~lp~~~~~~i~~~~~~~~~~~~~~~~--~~~~~~C~~~~~~--~~~P~i~f~f~g------~~~~l~~~~ 321 (374)
+||||||+++++|+++|++|++++.++......... .....+|+..... ..+|+|+|+|+| .+++|+|++
T Consensus 214 ~ivDSGTs~~~lp~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~~~f~g~~~~~~~~l~l~p~~ 293 (364)
T cd05473 214 AIVDSGTTNLRLPVKVFNAAVDAIKAASLIEDFPDGFWLGSQLACWQKGTTPWEIFPKISIYLRDENSSQSFRITILPQL 293 (364)
T ss_pred EEEeCCCcceeCCHHHHHHHHHHHHhhcccccCCccccCcceeecccccCchHhhCCcEEEEEccCCCCceEEEEECHHH
Confidence 999999999999999999999999887532211111 1112359865321 258999999976 368999999
Q ss_pred eEEEeC---CCeEEEEEEcCC-CCcceechhhhcceEEEEECCCCEEEEecCCCCCC
Q 017265 322 FFVKVS---EDIVCSVFKGIT-NSVPIYGNIMQTNFLVGYDIEQQTVSFKPTDCTKQ 374 (374)
Q Consensus 322 ~~~~~~---~~~~C~~i~~~~-~~~~ilG~~fl~~~y~vfD~~~~riGfa~~~C~~~ 374 (374)
|+++.. ....|+++.... .+.||||+.|||++|+|||++++|||||+++|.++
T Consensus 294 Y~~~~~~~~~~~~C~~~~~~~~~~~~ILG~~flr~~yvvfD~~~~rIGfa~~~C~~~ 350 (364)
T cd05473 294 YLRPVEDHGTQLDCYKFAISQSTNGTVIGAVIMEGFYVVFDRANKRVGFAVSTCAEH 350 (364)
T ss_pred hhhhhccCCCcceeeEEeeecCCCceEEeeeeEcceEEEEECCCCEEeeEecccccc
Confidence 998643 246898633222 45799999999999999999999999999999863
No 17
>cd05489 xylanase_inhibitor_I_like TAXI-I inhibits degradation of xylan in the cell wall. Xylanase inhibitor-I (TAXI-I) is a member of potent TAXI-type inhibitors of fungal and bacterial family 11 xylanases. Plants developed a diverse battery of defense mechanisms in response to continual challenges by a broad spectrum of pathogenic microorganisms. Their defense arsenal includes inhibitors of cell wall-degrading enzymes, which hinder a possible invasion and colonization by antagonists. Xylanases of fungal and bacterial pathogens are the key enzymes in the degradation of xylan in the cell wall. Plants secrete proteins that inhibit these degradation glycosidases, including xylanase. Surprisingly, TAXI-I displays structural homology with the pepsin-like family of aspartic proteases but is proteolytically nonfunctional, because one or more residues of the essential catalytic triad are absent. The structure of the TAXI-inhibitor, Aspergillus niger xylanase I complex, illustrates the ability
Probab=100.00 E-value=3e-42 Score=328.86 Aligned_cols=257 Identities=22% Similarity=0.397 Sum_probs=200.7
Q ss_pred ecCCCce-EEEEEEcCCCceeEecCCCCCCCCCCCCCCCCCCCCCCCccccCCCCccccCCCCC------------CCCC
Q 017265 97 IGTPPTE-RLAVADTGSDLIWTQCEPCPPSQCYMQDSPLFDPKMSSTYKSLPCSSSQCASLNQK------------SCSG 163 (374)
Q Consensus 97 iGtP~q~-~~l~~DTGS~~~Wv~~~~c~~~~C~~~~~~~y~p~~SsT~~~~~c~~~~C~~~~~~------------~C~~ 163 (374)
+|||-.+ +.|++||||+++||||.+ .+|+||..++|+++.|+..... .|.+
T Consensus 2 ~~~~~~~~~~~~~DTGS~l~WvqC~~----------------~~sst~~~~~C~s~~C~~~~~~~~~~~~~~~~~~~c~~ 65 (362)
T cd05489 2 TITPLKGAVPLVLDLAGPLLWSTCDA----------------GHSSTYQTVPCSSSVCSLANRYHCPGTCGGAPGPGCGN 65 (362)
T ss_pred cccCccCCeeEEEECCCCceeeeCCC----------------CCcCCCCccCcCChhhccccccCCCccccCCCCCCCCC
Confidence 5888777 999999999999998753 3588999999999999865422 5655
Q ss_pred CcceeeEe-eCCCceeeeeEEEEEEEecCCCCCc---ccCCceEEeeeeeCCC-CcCccccceeecCCCcchhhHHhhhh
Q 017265 164 VNCQYSVS-YGDGSFSNGNLATETVTLGSTTGQA---VALPGITFGCGTNNGG-LFNSKTTGIVGLGGGDISLISQMRTT 238 (374)
Q Consensus 164 ~~~~~~~~-Y~~gs~~~G~~~~D~v~i~~~~~~~---~~~~~~~fg~~~~~~~-~~~~~~~GilGLg~~~~s~~~ql~~~ 238 (374)
+.|.|... |++|+.+.|.+++|+|+|+..++.. ..++++.|||+..... .+....|||||||++.+|++.||..+
T Consensus 66 ~~C~y~~~~y~~gs~t~G~l~~Dtl~~~~~~g~~~~~~~~~~~~FGC~~~~~~~~~~~~~dGIlGLg~~~lSl~sql~~~ 145 (362)
T cd05489 66 NTCTAHPYNPVTGECATGDLTQDVLSANTTDGSNPLLVVIFNFVFSCAPSLLLKGLPPGAQGVAGLGRSPLSLPAQLASA 145 (362)
T ss_pred CcCeeEccccccCcEeeEEEEEEEEEecccCCCCcccceeCCEEEEcCCcccccCCccccccccccCCCccchHHHhhhh
Confidence 56888665 7899888899999999998654332 4688999999987643 22345899999999999999997542
Q ss_pred ----------------------cCC--------------c---------------------------eec----------
Q 017265 239 ----------------------IAG--------------N---------------------------QRL---------- 245 (374)
Q Consensus 239 ----------------------~~~--------------~---------------------------k~~---------- 245 (374)
||+ . ++.
T Consensus 146 ~~~~~~FS~CL~~~~~~~g~l~fG~~~~~~~~~~~~~~~~~~~tPl~~~~~~~~~Y~v~l~~IsVg~~~l~~~~~~~~~~ 225 (362)
T cd05489 146 FGVARKFALCLPSSPGGPGVAIFGGGPYYLFPPPIDLSKSLSYTPLLTNPRKSGEYYIGVTSIAVNGHAVPLNPTLSAND 225 (362)
T ss_pred cCCCcceEEEeCCCCCCCeeEEECCCchhcccccccccCCccccccccCCCCCCceEEEEEEEEECCEECCCCchhcccc
Confidence 110 0 000
Q ss_pred CCCCCcEEEeccccccccCHhHHHHHHHHHHhhcccCccCCC-CCCcccccccCC------CCCcceEEEEEeC--cEEE
Q 017265 246 GVSTPDIVIDSGTTLTFLPQGYNSNLLSVMSSMIEAQPVADP-TGSLELCYSFNS------LSQVPEVTIHFRG--ADVK 316 (374)
Q Consensus 246 ~~~~~~~iiDSGtt~~~lp~~~~~~i~~~~~~~~~~~~~~~~-~~~~~~C~~~~~------~~~~P~i~f~f~g--~~~~ 316 (374)
..+.+++||||||++++||+++|++|.++|.+++........ ....+.|+.... ...+|+|+|+|+| ++|+
T Consensus 226 ~~~~~g~iiDSGTs~t~lp~~~y~~l~~a~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~P~it~~f~g~g~~~~ 305 (362)
T cd05489 226 RLGPGGVKLSTVVPYTVLRSDIYRAFTQAFAKATARIPRVPAAAVFPELCYPASALGNTRLGYAVPAIDLVLDGGGVNWT 305 (362)
T ss_pred ccCCCcEEEecCCceEEECHHHHHHHHHHHHHHhcccCcCCCCCCCcCccccCCCcCCcccccccceEEEEEeCCCeEEE
Confidence 012458999999999999999999999999988753322111 111357987421 2479999999986 9999
Q ss_pred EcCceeEEEeCCCeEEEEEEcCC---CCcceechhhhcceEEEEECCCCEEEEecC
Q 017265 317 LSRSNFFVKVSEDIVCSVFKGIT---NSVPIYGNIMQTNFLVGYDIEQQTVSFKPT 369 (374)
Q Consensus 317 l~~~~~~~~~~~~~~C~~i~~~~---~~~~ilG~~fl~~~y~vfD~~~~riGfa~~ 369 (374)
|+|++|+++..++..|++|...+ ...||||+.|||++|++||++++|||||+.
T Consensus 306 l~~~ny~~~~~~~~~Cl~f~~~~~~~~~~~IlG~~~~~~~~vvyD~~~~riGfa~~ 361 (362)
T cd05489 306 IFGANSMVQVKGGVACLAFVDGGSEPRPAVVIGGHQMEDNLLVFDLEKSRLGFSSS 361 (362)
T ss_pred EcCCceEEEcCCCcEEEEEeeCCCCCCceEEEeeheecceEEEEECCCCEeecccC
Confidence 99999999987777999988654 347999999999999999999999999975
No 18
>cd05475 nucellin_like Nucellins, plant aspartic proteases specifically expressed in nucellar cells during degradation. Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. This degradation is a characteristic of programmed cell death. Nucellins are plant aspartic proteases specifically expressed in nucellar cells during degradation. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region, and two other regions nearly identical to two regions of plant aspartic proteases. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. Although the three-dimensional structures of the two lobes are very similar, the amino acid sequences are more d
Probab=100.00 E-value=1.6e-41 Score=313.32 Aligned_cols=209 Identities=35% Similarity=0.660 Sum_probs=171.1
Q ss_pred ccEEEEEEecCCCceEEEEEEcCCCceeEecC-CCCCCCCCCCCCCCCCCCCCCCccccCCCCccccCCCCCCCCCCcce
Q 017265 89 ANYLIRISIGTPPTERLAVADTGSDLIWTQCE-PCPPSQCYMQDSPLFDPKMSSTYKSLPCSSSQCASLNQKSCSGVNCQ 167 (374)
Q Consensus 89 ~~Y~~~i~iGtP~q~~~l~~DTGS~~~Wv~~~-~c~~~~C~~~~~~~y~p~~SsT~~~~~c~~~~C~~~~~~~C~~~~~~ 167 (374)
++|+++|.||||+|++.|+|||||+++||+|. +|. .| . |.
T Consensus 1 ~~Y~~~i~iGtP~q~~~v~~DTGS~~~Wv~c~~~c~--~c-------------------~------------------c~ 41 (273)
T cd05475 1 GYYYVTINIGNPPKPYFLDIDTGSDLTWLQCDAPCT--GC-------------------Q------------------CD 41 (273)
T ss_pred CceEEEEEcCCCCeeEEEEEccCCCceEEeCCCCCC--CC-------------------c------------------Cc
Confidence 47999999999999999999999999999984 676 55 1 88
Q ss_pred eeEeeCCCceeeeeEEEEEEEecCCCCCcccCCceEEeeeeeCCCCc---CccccceeecCCCcchhhHHhhhh------
Q 017265 168 YSVSYGDGSFSNGNLATETVTLGSTTGQAVALPGITFGCGTNNGGLF---NSKTTGIVGLGGGDISLISQMRTT------ 238 (374)
Q Consensus 168 ~~~~Y~~gs~~~G~~~~D~v~i~~~~~~~~~~~~~~fg~~~~~~~~~---~~~~~GilGLg~~~~s~~~ql~~~------ 238 (374)
|.+.|+||+.++|.+++|+|+|+..++. ..++++.|||+....+.+ ....+||||||++..++++||..+
T Consensus 42 ~~i~Ygd~~~~~G~~~~D~v~~~~~~~~-~~~~~~~Fgc~~~~~~~~~~~~~~~dGIlGLg~~~~s~~~ql~~~~~i~~~ 120 (273)
T cd05475 42 YEIEYADGGSSMGVLVTDIFSLKLTNGS-RAKPRIAFGCGYDQQGPLLNPPPPTDGILGLGRGKISLPSQLASQGIIKNV 120 (273)
T ss_pred cEeEeCCCCceEEEEEEEEEEEeecCCC-cccCCEEEEeeeccCCcccCCCccCCEEEECCCCCCCHHHHHHhcCCcCce
Confidence 9999998877789999999999753221 267899999998765432 357899999999999999998643
Q ss_pred c--------CCc--------------------e--e----------------cCCCCCcEEEeccccccccCHhHHHHHH
Q 017265 239 I--------AGN--------------------Q--R----------------LGVSTPDIVIDSGTTLTFLPQGYNSNLL 272 (374)
Q Consensus 239 ~--------~~~--------------------k--~----------------~~~~~~~~iiDSGtt~~~lp~~~~~~i~ 272 (374)
| ++. + . .......+||||||+++++|+++|
T Consensus 121 Fs~~l~~~~~g~l~~G~~~~~~g~i~ytpl~~~~~~~~y~v~l~~i~vg~~~~~~~~~~~ivDTGTt~t~lp~~~y---- 196 (273)
T cd05475 121 IGHCLSSNGGGFLFFGDDLVPSSGVTWTPMRRESQKKHYSPGPASLLFNGQPTGGKGLEVVFDSGSSYTYFNAQAY---- 196 (273)
T ss_pred EEEEccCCCCeEEEECCCCCCCCCeeecccccCCCCCeEEEeEeEEEECCEECcCCCceEEEECCCceEEcCCccc----
Confidence 0 010 0 0 012345789999999999999876
Q ss_pred HHHHhhcccCccCCCCCCcccccccCCCCCcceEEEEEeC----cEEEEcCceeEEEeCCCeEEEEEEcCC----CCcce
Q 017265 273 SVMSSMIEAQPVADPTGSLELCYSFNSLSQVPEVTIHFRG----ADVKLSRSNFFVKVSEDIVCSVFKGIT----NSVPI 344 (374)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~P~i~f~f~g----~~~~l~~~~~~~~~~~~~~C~~i~~~~----~~~~i 344 (374)
+|+|+|+|++ ++++|++++|++...++..|+++.... .+.||
T Consensus 197 ------------------------------~p~i~~~f~~~~~~~~~~l~~~~y~~~~~~~~~Cl~~~~~~~~~~~~~~i 246 (273)
T cd05475 197 ------------------------------FKPLTLKFGKGWRTRLLEIPPENYLIISEKGNVCLGILNGSEIGLGNTNI 246 (273)
T ss_pred ------------------------------cccEEEEECCCCceeEEEeCCCceEEEcCCCCEEEEEecCCCcCCCceEE
Confidence 4899999987 699999999999866667899955432 35799
Q ss_pred echhhhcceEEEEECCCCEEEEecCCC
Q 017265 345 YGNIMQTNFLVGYDIEQQTVSFKPTDC 371 (374)
Q Consensus 345 lG~~fl~~~y~vfD~~~~riGfa~~~C 371 (374)
||+.|||++|+|||++++|||||+++|
T Consensus 247 lG~~~l~~~~~vfD~~~~riGfa~~~C 273 (273)
T cd05475 247 IGDISMQGLMVIYDNEKQQIGWVRSDC 273 (273)
T ss_pred ECceEEEeeEEEEECcCCEeCcccCCC
Confidence 999999999999999999999999999
No 19
>cd06097 Aspergillopepsin_like Aspergillopepsin_like, aspartic proteases of fungal origin. The members of this family are aspartic proteases of fungal origin, including aspergillopepsin, rhizopuspepsin, endothiapepsin, and rodosporapepsin. The various fungal species in this family may be the most economically important genus of fungi. They may serve as virulence factors or as industrial aids. For example, Aspergillopepsin from A. fumigatus is involved in invasive aspergillosis owing to its elastolytic activity and Aspergillopepsins from the mold A. saitoi are used in fermentation industry. Aspartic proteinases are a group of proteolytic enzymes in which the scissile peptide bond is attacked by a nucleophilic water molecule activated by two aspartic residues in a DT(S)G motif at the active site. They have a similar fold composed of two beta-barrel domains. Between the N-terminal and C-terminal domains, each of which contributes one catalytic aspartic residue, there is an extended active-
Probab=100.00 E-value=2.7e-40 Score=306.11 Aligned_cols=215 Identities=27% Similarity=0.439 Sum_probs=171.8
Q ss_pred EEEEEEecCCCceEEEEEEcCCCceeEecCCCCCCCCCCCCCCCCCCCCCCCccccCCCCccccCCCCCCCCCCcceeeE
Q 017265 91 YLIRISIGTPPTERLAVADTGSDLIWTQCEPCPPSQCYMQDSPLFDPKMSSTYKSLPCSSSQCASLNQKSCSGVNCQYSV 170 (374)
Q Consensus 91 Y~~~i~iGtP~q~~~l~~DTGS~~~Wv~~~~c~~~~C~~~~~~~y~p~~SsT~~~~~c~~~~C~~~~~~~C~~~~~~~~~ 170 (374)
|+++|+||||+|++.|+|||||+++||+|..|. .|....++.|||++|+|++... .+.|.+
T Consensus 1 Y~~~i~vGtP~Q~~~v~~DTGS~~~wv~~~~c~--~~~~~~~~~y~~~~Sst~~~~~-----------------~~~~~i 61 (278)
T cd06097 1 YLTPVKIGTPPQTLNLDLDTGSSDLWVFSSETP--AAQQGGHKLYDPSKSSTAKLLP-----------------GATWSI 61 (278)
T ss_pred CeeeEEECCCCcEEEEEEeCCCCceeEeeCCCC--chhhccCCcCCCccCccceecC-----------------CcEEEE
Confidence 899999999999999999999999999999998 7766778889999999998753 188999
Q ss_pred eeCCCceeeeeEEEEEEEecCCCCCcccCCceEEeeeeeCCCC-c-CccccceeecCCCcchh---------hHHhhhh-
Q 017265 171 SYGDGSFSNGNLATETVTLGSTTGQAVALPGITFGCGTNNGGL-F-NSKTTGIVGLGGGDISL---------ISQMRTT- 238 (374)
Q Consensus 171 ~Y~~gs~~~G~~~~D~v~i~~~~~~~~~~~~~~fg~~~~~~~~-~-~~~~~GilGLg~~~~s~---------~~ql~~~- 238 (374)
.|++|+.+.|.+++|+|.|++. +++++.||+++...+. + ....+||||||++..+. ..+|..+
T Consensus 62 ~Y~~G~~~~G~~~~D~v~ig~~-----~~~~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~~~~~~~~~~~~~~~l~~~~ 136 (278)
T cd06097 62 SYGDGSSASGIVYTDTVSIGGV-----EVPNQAIELATAVSASFFSDTASDGLLGLAFSSINTVQPPKQKTFFENALSSL 136 (278)
T ss_pred EeCCCCeEEEEEEEEEEEECCE-----EECCeEEEEEeecCccccccccccceeeeccccccccccCCCCCHHHHHHHhc
Confidence 9999986679999999999987 8999999999987653 3 56899999999976542 3333221
Q ss_pred ------------------cCCc---------------e-------------e-----cCCCCCcEEEeccccccccCHhH
Q 017265 239 ------------------IAGN---------------Q-------------R-----LGVSTPDIVIDSGTTLTFLPQGY 267 (374)
Q Consensus 239 ------------------~~~~---------------k-------------~-----~~~~~~~~iiDSGtt~~~lp~~~ 267 (374)
+|+. + . .......+||||||+++++|+++
T Consensus 137 ~~~~Fs~~l~~~~~G~l~fGg~D~~~~~g~l~~~pi~~~~~~w~v~l~~i~v~~~~~~~~~~~~~iiDSGTs~~~lP~~~ 216 (278)
T cd06097 137 DAPLFTADLRKAAPGFYTFGYIDESKYKGEISWTPVDNSSGFWQFTSTSYTVGGDAPWSRSGFSAIADTGTTLILLPDAI 216 (278)
T ss_pred cCceEEEEecCCCCcEEEEeccChHHcCCceEEEEccCCCcEEEEEEeeEEECCcceeecCCceEEeecCCchhcCCHHH
Confidence 1111 0 0 01235679999999999999999
Q ss_pred HHHHHHHHHhhcccCccCCCCCCcccccccCCCCCcceEEEEEeCcEEEEcCceeEEEeCCCeEEEEEEcCCCCcceech
Q 017265 268 NSNLLSVMSSMIEAQPVADPTGSLELCYSFNSLSQVPEVTIHFRGADVKLSRSNFFVKVSEDIVCSVFKGITNSVPIYGN 347 (374)
Q Consensus 268 ~~~i~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~P~i~f~f~g~~~~l~~~~~~~~~~~~~~C~~i~~~~~~~~ilG~ 347 (374)
+++|.+++.+... ....+.+.+ +|.. .+|+|+|+| .||||+
T Consensus 217 ~~~l~~~l~g~~~--~~~~~~~~~-~C~~-----~~P~i~f~~-------------------------------~~ilGd 257 (278)
T cd06097 217 VEAYYSQVPGAYY--DSEYGGWVF-PCDT-----TLPDLSFAV-------------------------------FSILGD 257 (278)
T ss_pred HHHHHHhCcCCcc--cCCCCEEEE-ECCC-----CCCCEEEEE-------------------------------EEEEcc
Confidence 9999887743211 111233333 5874 389999999 699999
Q ss_pred hhhcceEEEEECCCCEEEEec
Q 017265 348 IMQTNFLVGYDIEQQTVSFKP 368 (374)
Q Consensus 348 ~fl~~~y~vfD~~~~riGfa~ 368 (374)
+|||++|+|||++++|||||+
T Consensus 258 ~fl~~~y~vfD~~~~~ig~A~ 278 (278)
T cd06097 258 VFLKAQYVVFDVGGPKLGFAP 278 (278)
T ss_pred hhhCceeEEEcCCCceeeecC
Confidence 999999999999999999996
No 20
>PF00026 Asp: Eukaryotic aspartyl protease The Prosite entry also includes Pfam:PF00077.; InterPro: IPR001461 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to MEROPS peptidase family A1 (pepsin family, clan AA). The type example is pepsin A from Homo sapiens (Human) . More than 70 aspartic peptidases, from all from eukaryotic organisms, have been identified. These include pepsins, cathepsins, and renins. The enzymes are synthesised with signal peptides, and the proenzymes are secreted or passed into the lysosomal/endosomal system, where acidification leads to autocatalytic activation. Most members of the pepsin family specifically cleave bonds in peptides that are at least six residues in length, with hydrophobic residues in both the P1 and P1' positions []. Crystallography has shown the active site to form a groove across the junction of the two lobes, with an extended loop projecting over the cleft to form an 11-residue flap, which encloses substrates and inhibitors within the active site []. Specificity is determined by several hydrophobic residues surrounding the catalytic aspartates, and by three residues in the flap. Cysteine residues are well conserved within the pepsin family, pepsin itself containing three disulphide loops. The first loop is found in all but the fungal enzymes, and is usually around five residues in length, but is longer in barrierpepsin and candidapepsin; the second loop is also small and found only in the animal enzymes; and the third loop is the largest, found in all members of the family, except for the cysteine-free polyporopepsin. The loops are spread unequally throughout the two lobes, suggesting that they formed after the initial gene duplication and fusion event []. This family does not include the retroviral nor retrotransposon aspartic proteases which are much smaller and appear to be homologous to the single domain aspartic proteases.; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 1CZI_E 3CMS_A 1CMS_A 4CMS_A 1YG9_A 2NR6_A 3LIZ_A 1FLH_A 3UTL_A 1QRP_E ....
Probab=100.00 E-value=9e-41 Score=314.89 Aligned_cols=245 Identities=27% Similarity=0.533 Sum_probs=198.7
Q ss_pred cEEEEEEecCCCceEEEEEEcCCCceeEecCCCCCCCC-CCCCCCCCCCCCCCCccccCCCCccccCCCCCCCCCCccee
Q 017265 90 NYLIRISIGTPPTERLAVADTGSDLIWTQCEPCPPSQC-YMQDSPLFDPKMSSTYKSLPCSSSQCASLNQKSCSGVNCQY 168 (374)
Q Consensus 90 ~Y~~~i~iGtP~q~~~l~~DTGS~~~Wv~~~~c~~~~C-~~~~~~~y~p~~SsT~~~~~c~~~~C~~~~~~~C~~~~~~~ 168 (374)
+|+++|.||||+|+++|++||||+++||++..|. .| .......|++++|+|++... +.+
T Consensus 1 ~Y~~~v~iGtp~q~~~~~iDTGS~~~wv~~~~c~--~~~~~~~~~~y~~~~S~t~~~~~------------------~~~ 60 (317)
T PF00026_consen 1 QYYINVTIGTPPQTFRVLIDTGSSDTWVPSSNCN--SCSSCASSGFYNPSKSSTFSNQG------------------KPF 60 (317)
T ss_dssp EEEEEEEETTTTEEEEEEEETTBSSEEEEBTTEC--SHTHHCTSC-BBGGGSTTEEEEE------------------EEE
T ss_pred CeEEEEEECCCCeEEEEEEecccceeeeceeccc--cccccccccccccccccccccce------------------eee
Confidence 5999999999999999999999999999999998 54 33577899999999999887 889
Q ss_pred eEeeCCCceeeeeEEEEEEEecCCCCCcccCCceEEeeeeeCCCC-c-CccccceeecCCCcc-------hhhHHhhhh-
Q 017265 169 SVSYGDGSFSNGNLATETVTLGSTTGQAVALPGITFGCGTNNGGL-F-NSKTTGIVGLGGGDI-------SLISQMRTT- 238 (374)
Q Consensus 169 ~~~Y~~gs~~~G~~~~D~v~i~~~~~~~~~~~~~~fg~~~~~~~~-~-~~~~~GilGLg~~~~-------s~~~ql~~~- 238 (374)
.+.|++|+ ++|.+++|+|.|++. .+.++.||++....+. + ....+||||||++.. +++.+|..+
T Consensus 61 ~~~y~~g~-~~G~~~~D~v~ig~~-----~~~~~~f~~~~~~~~~~~~~~~~~GilGLg~~~~~~~~~~~~~~~~l~~~g 134 (317)
T PF00026_consen 61 SISYGDGS-VSGNLVSDTVSIGGL-----TIPNQTFGLADSYSGDPFSPIPFDGILGLGFPSLSSSSTYPTFLDQLVQQG 134 (317)
T ss_dssp EEEETTEE-EEEEEEEEEEEETTE-----EEEEEEEEEEEEEESHHHHHSSSSEEEE-SSGGGSGGGTS-SHHHHHHHTT
T ss_pred eeeccCcc-cccccccceEeeeec-----cccccceeccccccccccccccccccccccCCcccccccCCcceecchhhc
Confidence 99999999 569999999999997 8889999999996553 2 578999999997543 355565443
Q ss_pred ----------------------cCCc----------------------e---e-------cCCCCCcEEEeccccccccC
Q 017265 239 ----------------------IAGN----------------------Q---R-------LGVSTPDIVIDSGTTLTFLP 264 (374)
Q Consensus 239 ----------------------~~~~----------------------k---~-------~~~~~~~~iiDSGtt~~~lp 264 (374)
+|+. . . .......++||||++++++|
T Consensus 135 ~i~~~~fsl~l~~~~~~~g~l~~Gg~d~~~~~g~~~~~~~~~~~~w~v~~~~i~i~~~~~~~~~~~~~~~Dtgt~~i~lp 214 (317)
T PF00026_consen 135 LISSNVFSLYLNPSDSQNGSLTFGGYDPSKYDGDLVWVPLVSSGYWSVPLDSISIGGESVFSSSGQQAILDTGTSYIYLP 214 (317)
T ss_dssp SSSSSEEEEEEESTTSSEEEEEESSEEGGGEESEEEEEEBSSTTTTEEEEEEEEETTEEEEEEEEEEEEEETTBSSEEEE
T ss_pred cccccccceeeeecccccchheeeccccccccCceeccCcccccccccccccccccccccccccceeeeccccccccccc
Confidence 1211 0 0 01112479999999999999
Q ss_pred HhHHHHHHHHHHhhcccCccCCCCCCcccccccCCCCCcceEEEEEeCcEEEEcCceeEEEeCC--CeEEEE-EEc----
Q 017265 265 QGYNSNLLSVMSSMIEAQPVADPTGSLELCYSFNSLSQVPEVTIHFRGADVKLSRSNFFVKVSE--DIVCSV-FKG---- 337 (374)
Q Consensus 265 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~P~i~f~f~g~~~~l~~~~~~~~~~~--~~~C~~-i~~---- 337 (374)
.+++++|++.+...... ..+ ..+|.... .+|.|+|+|++.+++|++++|+++... ...|+. |..
T Consensus 215 ~~~~~~i~~~l~~~~~~-----~~~-~~~c~~~~---~~p~l~f~~~~~~~~i~~~~~~~~~~~~~~~~C~~~i~~~~~~ 285 (317)
T PF00026_consen 215 RSIFDAIIKALGGSYSD-----GVY-SVPCNSTD---SLPDLTFTFGGVTFTIPPSDYIFKIEDGNGGYCYLGIQPMDSS 285 (317)
T ss_dssp HHHHHHHHHHHTTEEEC-----SEE-EEETTGGG---GSEEEEEEETTEEEEEEHHHHEEEESSTTSSEEEESEEEESST
T ss_pred chhhHHHHhhhcccccc-----eeE-EEeccccc---ccceEEEeeCCEEEEecchHhcccccccccceeEeeeeccccc
Confidence 99999999888765433 233 33598654 689999999999999999999998764 348988 887
Q ss_pred CCCCcceechhhhcceEEEEECCCCEEEEecC
Q 017265 338 ITNSVPIYGNIMQTNFLVGYDIEQQTVSFKPT 369 (374)
Q Consensus 338 ~~~~~~ilG~~fl~~~y~vfD~~~~riGfa~~ 369 (374)
.....+|||.+|||++|+|||.+++|||||+|
T Consensus 286 ~~~~~~iLG~~fl~~~y~vfD~~~~~ig~A~a 317 (317)
T PF00026_consen 286 DDSDDWILGSPFLRNYYVVFDYENNRIGFAQA 317 (317)
T ss_dssp TSSSEEEEEHHHHTTEEEEEETTTTEEEEEEE
T ss_pred ccCCceEecHHHhhceEEEEeCCCCEEEEecC
Confidence 22678999999999999999999999999985
No 21
>cd05476 pepsin_A_like_plant Chroloplast Nucleoids DNA-binding Protease and Nucellin, pepsin-like aspartic proteases from plants. This family contains pepsin like aspartic proteases from plants including Chloroplast Nucleoids DNA-binding Protease and Nucellin. Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco and Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The enzymes specifically cleave bonds in peptides which
Probab=100.00 E-value=4e-39 Score=296.13 Aligned_cols=197 Identities=49% Similarity=0.899 Sum_probs=167.9
Q ss_pred cEEEEEEecCCCceEEEEEEcCCCceeEecCCCCCCCCCCCCCCCCCCCCCCCccccCCCCccccCCCCCCCCCCcceee
Q 017265 90 NYLIRISIGTPPTERLAVADTGSDLIWTQCEPCPPSQCYMQDSPLFDPKMSSTYKSLPCSSSQCASLNQKSCSGVNCQYS 169 (374)
Q Consensus 90 ~Y~~~i~iGtP~q~~~l~~DTGS~~~Wv~~~~c~~~~C~~~~~~~y~p~~SsT~~~~~c~~~~C~~~~~~~C~~~~~~~~ 169 (374)
+|+++|+||||+|++.|+|||||+++||+| |.|.
T Consensus 1 ~Y~~~i~iGtP~q~~~v~~DTGSs~~wv~~----------------------------------------------~~~~ 34 (265)
T cd05476 1 EYLVTLSIGTPPQPFSLIVDTGSDLTWTQC----------------------------------------------CSYE 34 (265)
T ss_pred CeEEEEecCCCCcceEEEecCCCCCEEEcC----------------------------------------------CceE
Confidence 699999999999999999999999999965 3468
Q ss_pred EeeCCCceeeeeEEEEEEEecCCCCCcccCCceEEeeeeeCCCCc-CccccceeecCCCcchhhHHhhhh-------cC-
Q 017265 170 VSYGDGSFSNGNLATETVTLGSTTGQAVALPGITFGCGTNNGGLF-NSKTTGIVGLGGGDISLISQMRTT-------IA- 240 (374)
Q Consensus 170 ~~Y~~gs~~~G~~~~D~v~i~~~~~~~~~~~~~~fg~~~~~~~~~-~~~~~GilGLg~~~~s~~~ql~~~-------~~- 240 (374)
+.|+||+..+|.+++|+|.|++.+ ..++++.|||++...+ + ....+||||||++..++++||..+ +.
T Consensus 35 ~~Y~dg~~~~G~~~~D~v~~g~~~---~~~~~~~Fg~~~~~~~-~~~~~~~GIlGLg~~~~s~~~ql~~~~~~Fs~~l~~ 110 (265)
T cd05476 35 YSYGDGSSTSGVLATETFTFGDSS---VSVPNVAFGCGTDNEG-GSFGGADGILGLGRGPLSLVSQLGSTGNKFSYCLVP 110 (265)
T ss_pred eEeCCCceeeeeEEEEEEEecCCC---CccCCEEEEecccccC-CccCCCCEEEECCCCcccHHHHhhcccCeeEEEccC
Confidence 999999888899999999999852 2578999999998876 4 568999999999999999987643 11
Q ss_pred -------Cc--------------------e----e----------------c----------CCCCCcEEEecccccccc
Q 017265 241 -------GN--------------------Q----R----------------L----------GVSTPDIVIDSGTTLTFL 263 (374)
Q Consensus 241 -------~~--------------------k----~----------------~----------~~~~~~~iiDSGtt~~~l 263 (374)
+. + . . ......+||||||+++++
T Consensus 111 ~~~~~~~G~l~fGg~d~~~~~~l~~~p~~~~~~~~~~~~v~l~~i~v~~~~~~~~~~~~~~~~~~~~~ai~DTGTs~~~l 190 (265)
T cd05476 111 HDDTGGSSPLILGDAADLGGSGVVYTPLVKNPANPTYYYVNLEGISVGGKRLPIPPSVFAIDSDGSGGTIIDSGTTLTYL 190 (265)
T ss_pred CCCCCCCCeEEECCcccccCCCceEeecccCCCCCCceEeeeEEEEECCEEecCCchhcccccCCCCcEEEeCCCcceEc
Confidence 11 0 0 0 123457999999999999
Q ss_pred CHhHHHHHHHHHHhhcccCccCCCCCCcccccccCCCCCcceEEEEEe-CcEEEEcCceeEEEeCCCeEEEEEEcC-CCC
Q 017265 264 PQGYNSNLLSVMSSMIEAQPVADPTGSLELCYSFNSLSQVPEVTIHFR-GADVKLSRSNFFVKVSEDIVCSVFKGI-TNS 341 (374)
Q Consensus 264 p~~~~~~i~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~P~i~f~f~-g~~~~l~~~~~~~~~~~~~~C~~i~~~-~~~ 341 (374)
|+++| |+|+|+|+ |+++.+++++|+++..++..|+++... ..+
T Consensus 191 p~~~~-----------------------------------P~i~~~f~~~~~~~i~~~~y~~~~~~~~~C~~~~~~~~~~ 235 (265)
T cd05476 191 PDPAY-----------------------------------PDLTLHFDGGADLELPPENYFVDVGEGVVCLAILSSSSGG 235 (265)
T ss_pred Ccccc-----------------------------------CCEEEEECCCCEEEeCcccEEEECCCCCEEEEEecCCCCC
Confidence 99887 78999999 799999999999977667899997665 367
Q ss_pred cceechhhhcceEEEEECCCCEEEEecCCC
Q 017265 342 VPIYGNIMQTNFLVGYDIEQQTVSFKPTDC 371 (374)
Q Consensus 342 ~~ilG~~fl~~~y~vfD~~~~riGfa~~~C 371 (374)
.||||++|||++|++||++++|||||+++|
T Consensus 236 ~~ilG~~fl~~~~~vFD~~~~~iGfa~~~C 265 (265)
T cd05476 236 VSILGNIQQQNFLVEYDLENSRLGFAPADC 265 (265)
T ss_pred cEEEChhhcccEEEEEECCCCEEeeecCCC
Confidence 899999999999999999999999999999
No 22
>cd05474 SAP_like SAPs, pepsin-like proteinases secreted from pathogens to degrade host proteins. SAPs (Secreted aspartic proteinases) are secreted from a group of pathogenic fungi, predominantly Candida species. They are secreted from the pathogen to degrade host proteins. SAP is one of the most significant extracellular hydrolytic enzymes produced by C. albicans. SAP proteins, encoded by a family of 10 SAP genes. All 10 SAP genes of C. albicans encode preproenzymes, approximately 60 amino acid longer than the mature enzyme, which are processed when transported via the secretory pathway. The mature enzymes contain sequence motifs typical for all aspartyl proteinases, including the two conserved aspartate residues other active site and conserved cysteine residues implicated in the maintenance of the three-dimensional structure. Most Sap proteins contain putative N-glycosylation sites, but it remains to be determined which Sap proteins are glycosylated. This family of aspartate proteases
Probab=100.00 E-value=4.9e-38 Score=293.53 Aligned_cols=214 Identities=25% Similarity=0.477 Sum_probs=175.0
Q ss_pred cEEEEEEecCCCceEEEEEEcCCCceeEecCCCCCCCCCCCCCCCCCCCCCCCccccCCCCccccCCCCCCCCCCcceee
Q 017265 90 NYLIRISIGTPPTERLAVADTGSDLIWTQCEPCPPSQCYMQDSPLFDPKMSSTYKSLPCSSSQCASLNQKSCSGVNCQYS 169 (374)
Q Consensus 90 ~Y~~~i~iGtP~q~~~l~~DTGS~~~Wv~~~~c~~~~C~~~~~~~y~p~~SsT~~~~~c~~~~C~~~~~~~C~~~~~~~~ 169 (374)
.|+++|.||||+|++.|+|||||+++||+ .|.
T Consensus 2 ~Y~~~i~iGtp~q~~~v~~DTgS~~~wv~------------------------------------------------~~~ 33 (295)
T cd05474 2 YYSAELSVGTPPQKVTVLLDTGSSDLWVP------------------------------------------------DFS 33 (295)
T ss_pred eEEEEEEECCCCcEEEEEEeCCCCcceee------------------------------------------------eeE
Confidence 69999999999999999999999999995 257
Q ss_pred EeeCCCceeeeeEEEEEEEecCCCCCcccCCceEEeeeeeCCCCcCccccceeecCCCcc-----------hhhHHhhhh
Q 017265 170 VSYGDGSFSNGNLATETVTLGSTTGQAVALPGITFGCGTNNGGLFNSKTTGIVGLGGGDI-----------SLISQMRTT 238 (374)
Q Consensus 170 ~~Y~~gs~~~G~~~~D~v~i~~~~~~~~~~~~~~fg~~~~~~~~~~~~~~GilGLg~~~~-----------s~~~ql~~~ 238 (374)
+.|++|+.+.|.+++|+|+|++. .++++.|||++.. ...+||||||++.. +++.||..+
T Consensus 34 ~~Y~~g~~~~G~~~~D~v~~g~~-----~~~~~~fg~~~~~-----~~~~GilGLg~~~~~~~~~~~~~~~s~~~~L~~~ 103 (295)
T cd05474 34 ISYGDGTSASGTWGTDTVSIGGA-----TVKNLQFAVANST-----SSDVGVLGIGLPGNEATYGTGYTYPNFPIALKKQ 103 (295)
T ss_pred EEeccCCcEEEEEEEEEEEECCe-----EecceEEEEEecC-----CCCcceeeECCCCCcccccCCCcCCCHHHHHHHC
Confidence 88999877779999999999987 8899999999984 35789999999876 577776542
Q ss_pred -----------------------cCCc----------------e------e--------------c-----CCCCCcEEE
Q 017265 239 -----------------------IAGN----------------Q------R--------------L-----GVSTPDIVI 254 (374)
Q Consensus 239 -----------------------~~~~----------------k------~--------------~-----~~~~~~~ii 254 (374)
+|+. . . . ......++|
T Consensus 104 g~i~~~~Fsl~l~~~~~~~g~l~~Gg~d~~~~~g~~~~~p~~~~~~~~~~~~~~v~l~~i~v~~~~~~~~~~~~~~~~ii 183 (295)
T cd05474 104 GLIKKNAYSLYLNDLDASTGSILFGGVDTAKYSGDLVTLPIVNDNGGSEPSELSVTLSSISVNGSSGNTTLLSKNLPALL 183 (295)
T ss_pred CcccceEEEEEeCCCCCCceeEEEeeeccceeeceeEEEeCcCcCCCCCceEEEEEEEEEEEEcCCCcccccCCCccEEE
Confidence 1110 0 0 0 123468999
Q ss_pred eccccccccCHhHHHHHHHHHHhhcccCccCCCCCCcccccccCCCCCcceEEEEEeCcEEEEcCceeEEEeC----CCe
Q 017265 255 DSGTTLTFLPQGYNSNLLSVMSSMIEAQPVADPTGSLELCYSFNSLSQVPEVTIHFRGADVKLSRSNFFVKVS----EDI 330 (374)
Q Consensus 255 DSGtt~~~lp~~~~~~i~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~P~i~f~f~g~~~~l~~~~~~~~~~----~~~ 330 (374)
||||++++||++++++|++++.+..... ...+ ..+|+... . |+|+|+|+|++++||+++|+++.. .+.
T Consensus 184 DSGt~~~~lP~~~~~~l~~~~~~~~~~~---~~~~-~~~C~~~~---~-p~i~f~f~g~~~~i~~~~~~~~~~~~~~~~~ 255 (295)
T cd05474 184 DSGTTLTYLPSDIVDAIAKQLGATYDSD---EGLY-VVDCDAKD---D-GSLTFNFGGATISVPLSDLVLPASTDDGGDG 255 (295)
T ss_pred CCCCccEeCCHHHHHHHHHHhCCEEcCC---CcEE-EEeCCCCC---C-CEEEEEECCeEEEEEHHHhEeccccCCCCCC
Confidence 9999999999999999999887654321 2233 44699764 4 999999999999999999999764 257
Q ss_pred EEEE-EEcCCCCcceechhhhcceEEEEECCCCEEEEecC
Q 017265 331 VCSV-FKGITNSVPIYGNIMQTNFLVGYDIEQQTVSFKPT 369 (374)
Q Consensus 331 ~C~~-i~~~~~~~~ilG~~fl~~~y~vfD~~~~riGfa~~ 369 (374)
.|+. |++.+.+.||||++|||++|++||.+++|||||++
T Consensus 256 ~C~~~i~~~~~~~~iLG~~fl~~~y~vfD~~~~~ig~a~a 295 (295)
T cd05474 256 ACYLGIQPSTSDYNILGDTFLRSAYVVYDLDNNEISLAQA 295 (295)
T ss_pred CeEEEEEeCCCCcEEeChHHhhcEEEEEECCCCEEEeecC
Confidence 8965 88775478999999999999999999999999986
No 23
>cd05471 pepsin_like Pepsin-like aspartic proteases, bilobal enzymes that cleave bonds in peptides at acidic pH. Pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, renin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (renin, cathepsin D and E, pepsin) or commercially (chymosin) important. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Aspartate residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. Most members of the pepsin family specifically cleave bonds in peptides that are at least six residues in length, with hydrophobic residu
Probab=100.00 E-value=5.7e-36 Score=277.50 Aligned_cols=214 Identities=34% Similarity=0.688 Sum_probs=173.7
Q ss_pred EEEEEEecCCCceEEEEEEcCCCceeEecCCCCCCCCCCCCCCC--CCCCCCCCccccCCCCccccCCCCCCCCCCccee
Q 017265 91 YLIRISIGTPPTERLAVADTGSDLIWTQCEPCPPSQCYMQDSPL--FDPKMSSTYKSLPCSSSQCASLNQKSCSGVNCQY 168 (374)
Q Consensus 91 Y~~~i~iGtP~q~~~l~~DTGS~~~Wv~~~~c~~~~C~~~~~~~--y~p~~SsT~~~~~c~~~~C~~~~~~~C~~~~~~~ 168 (374)
|+++|.||||+|++.|+|||||+++||+|..|. .|..+.... |++..|+++.... |.|
T Consensus 1 Y~~~i~iGtp~q~~~l~~DTGS~~~wv~~~~c~--~~~~~~~~~~~~~~~~s~~~~~~~------------------~~~ 60 (283)
T cd05471 1 YYGEITIGTPPQKFSVIFDTGSSLLWVPSSNCT--SCSCQKHPRFKYDSSKSSTYKDTG------------------CTF 60 (283)
T ss_pred CEEEEEECCCCcEEEEEEeCCCCCEEEecCCCC--ccccccCCCCccCccCCceeecCC------------------CEE
Confidence 789999999999999999999999999999998 665444444 7888888877765 899
Q ss_pred eEeeCCCceeeeeEEEEEEEecCCCCCcccCCceEEeeeeeCCCCc-CccccceeecCCCc------chhhHHhhhh---
Q 017265 169 SVSYGDGSFSNGNLATETVTLGSTTGQAVALPGITFGCGTNNGGLF-NSKTTGIVGLGGGD------ISLISQMRTT--- 238 (374)
Q Consensus 169 ~~~Y~~gs~~~G~~~~D~v~i~~~~~~~~~~~~~~fg~~~~~~~~~-~~~~~GilGLg~~~------~s~~~ql~~~--- 238 (374)
.+.|++|+.. |.+++|+|+|++. .++++.|||++.....+ ....+||||||++. .+++.||..+
T Consensus 61 ~~~Y~~g~~~-g~~~~D~v~~~~~-----~~~~~~fg~~~~~~~~~~~~~~~GilGLg~~~~~~~~~~s~~~~l~~~~~i 134 (283)
T cd05471 61 SITYGDGSVT-GGLGTDTVTIGGL-----TIPNQTFGCATSESGDFSSSGFDGILGLGFPSLSVDGVPSFFDQLKSQGLI 134 (283)
T ss_pred EEEECCCeEE-EEEEEeEEEECCE-----EEeceEEEEEeccCCcccccccceEeecCCcccccccCCCHHHHHHHCCCC
Confidence 9999999776 9999999999987 78999999999987644 57899999999988 6788887642
Q ss_pred --------cCC-----c------------------------e--e------------------cCCCCCcEEEecccccc
Q 017265 239 --------IAG-----N------------------------Q--R------------------LGVSTPDIVIDSGTTLT 261 (374)
Q Consensus 239 --------~~~-----~------------------------k--~------------------~~~~~~~~iiDSGtt~~ 261 (374)
++. . . . .......++|||||+++
T Consensus 135 ~~~~Fs~~l~~~~~~~~~g~l~~Gg~d~~~~~~~~~~~p~~~~~~~~~~v~l~~i~v~~~~~~~~~~~~~~iiDsGt~~~ 214 (283)
T cd05471 135 SSPVFSFYLGRDGDGGNGGELTFGGIDPSKYTGDLTYTPVVSNGPGYWQVPLDGISVGGKSVISSSGGGGAIVDSGTSLI 214 (283)
T ss_pred CCCEEEEEEcCCCCCCCCCEEEEcccCccccCCceEEEecCCCCCCEEEEEeCeEEECCceeeecCCCcEEEEecCCCCE
Confidence 111 0 0 0 01234679999999999
Q ss_pred ccCHhHHHHHHHHHHhhcccCccCCCCCCcccccccCCCCCcceEEEEEeCcEEEEcCceeEEEeCCCeEEEEEEcCCCC
Q 017265 262 FLPQGYNSNLLSVMSSMIEAQPVADPTGSLELCYSFNSLSQVPEVTIHFRGADVKLSRSNFFVKVSEDIVCSVFKGITNS 341 (374)
Q Consensus 262 ~lp~~~~~~i~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~P~i~f~f~g~~~~l~~~~~~~~~~~~~~C~~i~~~~~~ 341 (374)
+||++++++|++++.+.... ....+.. .|.... .+|+|+|+|
T Consensus 215 ~lp~~~~~~l~~~~~~~~~~---~~~~~~~-~~~~~~---~~p~i~f~f------------------------------- 256 (283)
T cd05471 215 YLPSSVYDAILKALGAAVSS---SDGGYGV-DCSPCD---TLPDITFTF------------------------------- 256 (283)
T ss_pred eCCHHHHHHHHHHhCCcccc---cCCcEEE-eCcccC---cCCCEEEEE-------------------------------
Confidence 99999999999988876543 1112212 254433 799999999
Q ss_pred cceechhhhcceEEEEECCCCEEEEec
Q 017265 342 VPIYGNIMQTNFLVGYDIEQQTVSFKP 368 (374)
Q Consensus 342 ~~ilG~~fl~~~y~vfD~~~~riGfa~ 368 (374)
.+|||++|||++|++||.+++|||||+
T Consensus 257 ~~ilG~~fl~~~y~vfD~~~~~igfa~ 283 (283)
T cd05471 257 LWILGDVFLRNYYTVFDLDNNRIGFAP 283 (283)
T ss_pred EEEccHhhhhheEEEEeCCCCEEeecC
Confidence 699999999999999999999999986
No 24
>PF14543 TAXi_N: Xylanase inhibitor N-terminal; PDB: 3HD8_A 3VLB_A 3VLA_A 3AUP_D 1T6G_A 1T6E_X 2B42_A.
Probab=99.94 E-value=5.6e-27 Score=199.29 Aligned_cols=136 Identities=51% Similarity=0.938 Sum_probs=113.3
Q ss_pred EEEEEEecCCCceEEEEEEcCCCceeEecCCCCCCCCCCCCCCCCCCCCCCCccccCCCCccccCCCCC--CCC--CCcc
Q 017265 91 YLIRISIGTPPTERLAVADTGSDLIWTQCEPCPPSQCYMQDSPLFDPKMSSTYKSLPCSSSQCASLNQK--SCS--GVNC 166 (374)
Q Consensus 91 Y~~~i~iGtP~q~~~l~~DTGS~~~Wv~~~~c~~~~C~~~~~~~y~p~~SsT~~~~~c~~~~C~~~~~~--~C~--~~~~ 166 (374)
|+++|.||||+|++.|+|||||+++|++| ..+.|+|++|+||+.++|.++.|...+.. .|. +..|
T Consensus 1 Y~~~~~iGtP~~~~~lvvDtgs~l~W~~C-----------~~~~f~~~~Sst~~~v~C~s~~C~~~~~~~~~~~~~~~~C 69 (164)
T PF14543_consen 1 YYVSVSIGTPPQPFSLVVDTGSDLTWVQC-----------PDPPFDPSKSSTYRPVPCSSPQCSSAPSFCPCCCCSNNSC 69 (164)
T ss_dssp EEEEEECTCTTEEEEEEEETT-SSEEEET---------------STT-TTSSBEC-BTTSHHHHHCTSSBTCCTCESSEE
T ss_pred CEEEEEeCCCCceEEEEEECCCCceEEcC-----------CCcccCCccCCcccccCCCCcchhhcccccccCCCCcCcc
Confidence 89999999999999999999999999977 34789999999999999999999977643 333 3489
Q ss_pred eeeEeeCCCceeeeeEEEEEEEecCCCCCcccCCceEEeeeeeCCCCcCccccceeecCCCcchhhHHhhhh
Q 017265 167 QYSVSYGDGSFSNGNLATETVTLGSTTGQAVALPGITFGCGTNNGGLFNSKTTGIVGLGGGDISLISQMRTT 238 (374)
Q Consensus 167 ~~~~~Y~~gs~~~G~~~~D~v~i~~~~~~~~~~~~~~fg~~~~~~~~~~~~~~GilGLg~~~~s~~~ql~~~ 238 (374)
.|.+.|++++.+.|.+++|+|+++..++....+.++.|||++...+.+ ...+||||||+.++||++||+.+
T Consensus 70 ~y~~~y~~~s~~~G~l~~D~~~~~~~~~~~~~~~~~~FGC~~~~~g~~-~~~~GilGLg~~~~Sl~sQl~~~ 140 (164)
T PF14543_consen 70 PYSQSYGDGSSSSGFLASDTLTFGSSSGGSNSVPDFIFGCATSNSGLF-YGADGILGLGRGPLSLPSQLASS 140 (164)
T ss_dssp EEEEEETTTEEEEEEEEEEEEEEEEESSSSEEEEEEEEEEE-GGGTSS-TTEEEEEE-SSSTTSHHHHHHHH
T ss_pred cceeecCCCccccCceEEEEEEecCCCCCCceeeeEEEEeeeccccCC-cCCCcccccCCCcccHHHHHHHh
Confidence 999999999999999999999999865444578899999999988755 58999999999999999999766
No 25
>cd05470 pepsin_retropepsin_like Cellular and retroviral pepsin-like aspartate proteases. This family includes both cellular and retroviral pepsin-like aspartate proteases. The cellular pepsin and pepsin-like enzymes are twice as long as their retroviral counterparts. The cellular pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, rennin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (rennin, cathepsin D and E, pepsin) or commercially (chymosin) important. The eukaryotic pepsin-like proteases contain two domains possessing similar topological features. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except in the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The eukaryotic pepsin-like proteases have two active site
Probab=99.92 E-value=1.1e-24 Score=172.77 Aligned_cols=106 Identities=40% Similarity=0.741 Sum_probs=94.5
Q ss_pred EEEEecCCCceEEEEEEcCCCceeEecCCCCCCCCCCCCCCCC-CCCCCCCccccCCCCccccCCCCCCCCCCcceeeEe
Q 017265 93 IRISIGTPPTERLAVADTGSDLIWTQCEPCPPSQCYMQDSPLF-DPKMSSTYKSLPCSSSQCASLNQKSCSGVNCQYSVS 171 (374)
Q Consensus 93 ~~i~iGtP~q~~~l~~DTGS~~~Wv~~~~c~~~~C~~~~~~~y-~p~~SsT~~~~~c~~~~C~~~~~~~C~~~~~~~~~~ 171 (374)
++|.||||+|++.|+|||||+++||+|..|. .|..+.++.| +|+.|++++... |.|.+.
T Consensus 1 ~~i~vGtP~q~~~~~~DTGSs~~Wv~~~~c~--~~~~~~~~~~~~~~~sst~~~~~------------------~~~~~~ 60 (109)
T cd05470 1 IEIGIGTPPQTFNVLLDTGSSNLWVPSVDCQ--SLAIYSHSSYDDPSASSTYSDNG------------------CTFSIT 60 (109)
T ss_pred CEEEeCCCCceEEEEEeCCCCCEEEeCCCCC--CcccccccccCCcCCCCCCCCCC------------------cEEEEE
Confidence 4799999999999999999999999999998 6655566677 999999999876 899999
Q ss_pred eCCCceeeeeEEEEEEEecCCCCCcccCCceEEeeeeeCCCCc--Cccccceeec
Q 017265 172 YGDGSFSNGNLATETVTLGSTTGQAVALPGITFGCGTNNGGLF--NSKTTGIVGL 224 (374)
Q Consensus 172 Y~~gs~~~G~~~~D~v~i~~~~~~~~~~~~~~fg~~~~~~~~~--~~~~~GilGL 224 (374)
|++|+.. |.+++|+|+|++. .++++.|||++...+.+ ....+|||||
T Consensus 61 Y~~g~~~-g~~~~D~v~ig~~-----~~~~~~fg~~~~~~~~~~~~~~~~GilGL 109 (109)
T cd05470 61 YGTGSLS-GGLSTDTVSIGDI-----EVVGQAFGCATDEPGATFLPALFDGILGL 109 (109)
T ss_pred eCCCeEE-EEEEEEEEEECCE-----EECCEEEEEEEecCCccccccccccccCC
Confidence 9999876 9999999999986 89999999999987753 4678999998
No 26
>PF14541 TAXi_C: Xylanase inhibitor C-terminal; PDB: 3AUP_D 3HD8_A 1T6G_A 1T6E_X 2B42_A 3VLB_A 3VLA_A.
Probab=99.87 E-value=4.6e-22 Score=168.91 Aligned_cols=122 Identities=35% Similarity=0.679 Sum_probs=98.6
Q ss_pred CCCCcEEEeccccccccCHhHHHHHHHHHHhhcccCcc---CCCCCCcccccccCC------CCCcceEEEEEe-CcEEE
Q 017265 247 VSTPDIVIDSGTTLTFLPQGYNSNLLSVMSSMIEAQPV---ADPTGSLELCYSFNS------LSQVPEVTIHFR-GADVK 316 (374)
Q Consensus 247 ~~~~~~iiDSGtt~~~lp~~~~~~i~~~~~~~~~~~~~---~~~~~~~~~C~~~~~------~~~~P~i~f~f~-g~~~~ 316 (374)
.+.+++||||||++++||+++|+++.++|.+++..... ......++.||+... ...+|+|+|+|. |++++
T Consensus 27 ~~~g~~iiDSGT~~T~L~~~~y~~l~~al~~~~~~~~~~~~~~~~~~~~~Cy~~~~~~~~~~~~~~P~i~l~F~~ga~l~ 106 (161)
T PF14541_consen 27 DGSGGTIIDSGTTYTYLPPPVYDALVQALDAQMGAPGVSREAPPFSGFDLCYNLSSFGVNRDWAKFPTITLHFEGGADLT 106 (161)
T ss_dssp TSTCSEEE-SSSSSEEEEHHHHHHHHHHHHHHHHTCT--CEE---TT-S-EEEGGCS-EETTEESS--EEEEETTSEEEE
T ss_pred CCCCCEEEECCCCccCCcHHHHHHHHHHHHHHhhhcccccccccCCCCCceeeccccccccccccCCeEEEEEeCCccee
Confidence 35789999999999999999999999999999865431 234455778998865 248999999999 59999
Q ss_pred EcCceeEEEeCCCeEEEEEEcC---CCCcceechhhhcceEEEEECCCCEEEEec
Q 017265 317 LSRSNFFVKVSEDIVCSVFKGI---TNSVPIYGNIMQTNFLVGYDIEQQTVSFKP 368 (374)
Q Consensus 317 l~~~~~~~~~~~~~~C~~i~~~---~~~~~ilG~~fl~~~y~vfD~~~~riGfa~ 368 (374)
|++++|++..+++..|++|.++ ..+..|||+.+|++++++||++++||||+|
T Consensus 107 l~~~~y~~~~~~~~~Cla~~~~~~~~~~~~viG~~~~~~~~v~fDl~~~~igF~~ 161 (161)
T PF14541_consen 107 LPPENYFVQVSPGVFCLAFVPSDADDDGVSVIGNFQQQNYHVVFDLENGRIGFAP 161 (161)
T ss_dssp E-HHHHEEEECTTEEEESEEEETSTTSSSEEE-HHHCCTEEEEEETTTTEEEEEE
T ss_pred eeccceeeeccCCCEEEEEEccCCCCCCcEEECHHHhcCcEEEEECCCCEEEEeC
Confidence 9999999999888999998877 378899999999999999999999999986
No 27
>cd05483 retropepsin_like_bacteria Bacterial aspartate proteases, retropepsin-like protease family. This family of bacteria aspartate proteases is a subfamily of retropepsin-like protease family, which includes enzymes from retrovirus and retrotransposons. While fungal and mammalian pepsin-like aspartate proteases are bilobal proteins with structurally related N- and C-termini, this family of bacteria aspartate proteases is half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate proteases is classified by MEROPS as the peptidase family A2 (retropepsin family, clan AA), subfamily A2A.
Probab=98.22 E-value=4e-06 Score=64.03 Aligned_cols=93 Identities=13% Similarity=0.193 Sum_probs=67.5
Q ss_pred cEEEEEEecCCCceEEEEEEcCCCceeEecCCCCCCCCCCCCCCCCCCCCCCCccccCCCCccccCCCCCCCCCCcceee
Q 017265 90 NYLIRISIGTPPTERLAVADTGSDLIWTQCEPCPPSQCYMQDSPLFDPKMSSTYKSLPCSSSQCASLNQKSCSGVNCQYS 169 (374)
Q Consensus 90 ~Y~~~i~iGtP~q~~~l~~DTGS~~~Wv~~~~c~~~~C~~~~~~~y~p~~SsT~~~~~c~~~~C~~~~~~~C~~~~~~~~ 169 (374)
.|++++.|| +++++++||||++.+|+...... .+. . .... . ....
T Consensus 2 ~~~v~v~i~--~~~~~~llDTGa~~s~i~~~~~~--~l~-----~-------~~~~-~------------------~~~~ 46 (96)
T cd05483 2 HFVVPVTIN--GQPVRFLLDTGASTTVISEELAE--RLG-----L-------PLTL-G------------------GKVT 46 (96)
T ss_pred cEEEEEEEC--CEEEEEEEECCCCcEEcCHHHHH--HcC-----C-------CccC-C------------------CcEE
Confidence 589999999 79999999999999999664322 120 0 0000 0 4556
Q ss_pred EeeCCCceeeeeEEEEEEEecCCCCCcccCCceEEeeeeeCCCCcCccccceeecCC
Q 017265 170 VSYGDGSFSNGNLATETVTLGSTTGQAVALPGITFGCGTNNGGLFNSKTTGIVGLGG 226 (374)
Q Consensus 170 ~~Y~~gs~~~G~~~~D~v~i~~~~~~~~~~~~~~fg~~~~~~~~~~~~~~GilGLg~ 226 (374)
+..++|.........+.+++++. .++++.+........ ..+||||+.+
T Consensus 47 ~~~~~G~~~~~~~~~~~i~ig~~-----~~~~~~~~v~d~~~~----~~~gIlG~d~ 94 (96)
T cd05483 47 VQTANGRVRAARVRLDSLQIGGI-----TLRNVPAVVLPGDAL----GVDGLLGMDF 94 (96)
T ss_pred EEecCCCccceEEEcceEEECCc-----EEeccEEEEeCCccc----CCceEeChHH
Confidence 77788877666777999999987 788888877765432 5889999853
No 28
>TIGR02281 clan_AA_DTGA clan AA aspartic protease, TIGR02281 family. This family consists of predicted aspartic proteases, typically from 180 to 230 amino acids in length, in MEROPS clan AA. This model describes the well-conserved 121-residue C-terminal region. The poorly conserved, variable length N-terminal region usually contains a predicted transmembrane helix. Sequences in the seed alignment and those scoring above the trusted cutoff are Proteobacterial; homologs scroing between trusted and noise are found in Pyrobaculum aerophilum str. IM2 (archaeal), Pirellula sp. (Planctomycetes), and Nostoc sp. PCC 7120 (Cyanobacteria).
Probab=97.06 E-value=0.0027 Score=50.91 Aligned_cols=96 Identities=13% Similarity=0.195 Sum_probs=64.5
Q ss_pred CCccEEEEEEecCCCceEEEEEEcCCCceeEecCCCCCCCCCCCCCCCCCCCCCCCccccCCCCccccCCCCCCCCCCcc
Q 017265 87 NNANYLIRISIGTPPTERLAVADTGSDLIWTQCEPCPPSQCYMQDSPLFDPKMSSTYKSLPCSSSQCASLNQKSCSGVNC 166 (374)
Q Consensus 87 ~~~~Y~~~i~iGtP~q~~~l~~DTGS~~~Wv~~~~c~~~~C~~~~~~~y~p~~SsT~~~~~c~~~~C~~~~~~~C~~~~~ 166 (374)
.++.|++++.|. ++++.++||||++.+-+....-. .. ..++.. .. .
T Consensus 8 ~~g~~~v~~~In--G~~~~flVDTGAs~t~is~~~A~--~L------gl~~~~------~~------------------~ 53 (121)
T TIGR02281 8 GDGHFYATGRVN--GRNVRFLVDTGATSVALNEEDAQ--RL------GLDLNR------LG------------------Y 53 (121)
T ss_pred CCCeEEEEEEEC--CEEEEEEEECCCCcEEcCHHHHH--Hc------CCCccc------CC------------------c
Confidence 478899999997 78999999999999987543221 01 011111 00 2
Q ss_pred eeeEeeCCCceeeeeEEEEEEEecCCCCCcccCCceEEeeeeeCCCCcCccccceeecCC
Q 017265 167 QYSVSYGDGSFSNGNLATETVTLGSTTGQAVALPGITFGCGTNNGGLFNSKTTGIVGLGG 226 (374)
Q Consensus 167 ~~~~~Y~~gs~~~G~~~~D~v~i~~~~~~~~~~~~~~fg~~~~~~~~~~~~~~GilGLg~ 226 (374)
...+.-+.|......+.-|.+.+|+. .+.++.+.+..... ..+|+||+.+
T Consensus 54 ~~~~~ta~G~~~~~~~~l~~l~iG~~-----~~~nv~~~v~~~~~-----~~~~LLGm~f 103 (121)
T TIGR02281 54 TVTVSTANGQIKAARVTLDRVAIGGI-----VVNDVDAMVAEGGA-----LSESLLGMSF 103 (121)
T ss_pred eEEEEeCCCcEEEEEEEeCEEEECCE-----EEeCcEEEEeCCCc-----CCceEcCHHH
Confidence 33444556666546678899999997 88888877764321 2479999864
No 29
>PF13650 Asp_protease_2: Aspartyl protease
Probab=96.81 E-value=0.0078 Score=44.94 Aligned_cols=89 Identities=19% Similarity=0.250 Sum_probs=55.8
Q ss_pred EEEEecCCCceEEEEEEcCCCceeEecCCCCCCCCCCCCCCCCCCCCCCCccccCCCCccccCCCCCCCCCCcceeeEee
Q 017265 93 IRISIGTPPTERLAVADTGSDLIWTQCEPCPPSQCYMQDSPLFDPKMSSTYKSLPCSSSQCASLNQKSCSGVNCQYSVSY 172 (374)
Q Consensus 93 ~~i~iGtP~q~~~l~~DTGS~~~Wv~~~~c~~~~C~~~~~~~y~p~~SsT~~~~~c~~~~C~~~~~~~C~~~~~~~~~~Y 172 (374)
+++.|+ ++++++++|||++.+.+...-.. .. ...+.... ....+.-
T Consensus 1 V~v~vn--g~~~~~liDTGa~~~~i~~~~~~--~l------~~~~~~~~------------------------~~~~~~~ 46 (90)
T PF13650_consen 1 VPVKVN--GKPVRFLIDTGASISVISRSLAK--KL------GLKPRPKS------------------------VPISVSG 46 (90)
T ss_pred CEEEEC--CEEEEEEEcCCCCcEEECHHHHH--Hc------CCCCcCCc------------------------eeEEEEe
Confidence 467787 78999999999998888554332 11 00111000 1233444
Q ss_pred CCCceeeeeEEEEEEEecCCCCCcccCCceEEeeeeeCCCCcCccccceeecC
Q 017265 173 GDGSFSNGNLATETVTLGSTTGQAVALPGITFGCGTNNGGLFNSKTTGIVGLG 225 (374)
Q Consensus 173 ~~gs~~~G~~~~D~v~i~~~~~~~~~~~~~~fg~~~~~~~~~~~~~~GilGLg 225 (374)
.+|.........+.+.+++. .+.+..|-.... ....+||||+-
T Consensus 47 ~~g~~~~~~~~~~~i~ig~~-----~~~~~~~~v~~~-----~~~~~~iLG~d 89 (90)
T PF13650_consen 47 AGGSVTVYRGRVDSITIGGI-----TLKNVPFLVVDL-----GDPIDGILGMD 89 (90)
T ss_pred CCCCEEEEEEEEEEEEECCE-----EEEeEEEEEECC-----CCCCEEEeCCc
Confidence 55555546667778999986 777777766651 14678999974
No 30
>cd05479 RP_DDI RP_DDI; retropepsin-like domain of DNA damage inducible protein. The family represents the retropepsin-like domain of DNA damage inducible protein. DNA damage inducible protein has a retropepsin-like domain and an amino-terminal ubiquitin-like domain and/or a UBA (ubiquitin-associated) domain. This CD represents the retropepsin-like domain of DDI.
Probab=95.57 E-value=0.086 Score=42.35 Aligned_cols=35 Identities=14% Similarity=0.135 Sum_probs=28.8
Q ss_pred CCccEEEEEEecCCCceEEEEEEcCCCceeEecCCCC
Q 017265 87 NNANYLIRISIGTPPTERLAVADTGSDLIWTQCEPCP 123 (374)
Q Consensus 87 ~~~~Y~~~i~iGtP~q~~~l~~DTGS~~~Wv~~~~c~ 123 (374)
....+++++.|+ ++++.+++|||++..++....+.
T Consensus 13 ~~~~~~v~~~In--g~~~~~LvDTGAs~s~Is~~~a~ 47 (124)
T cd05479 13 KVPMLYINVEIN--GVPVKAFVDSGAQMTIMSKACAE 47 (124)
T ss_pred eeeEEEEEEEEC--CEEEEEEEeCCCceEEeCHHHHH
Confidence 345689999998 89999999999999998655433
No 31
>cd05479 RP_DDI RP_DDI; retropepsin-like domain of DNA damage inducible protein. The family represents the retropepsin-like domain of DNA damage inducible protein. DNA damage inducible protein has a retropepsin-like domain and an amino-terminal ubiquitin-like domain and/or a UBA (ubiquitin-associated) domain. This CD represents the retropepsin-like domain of DDI.
Probab=95.04 E-value=0.038 Score=44.41 Aligned_cols=94 Identities=12% Similarity=0.140 Sum_probs=53.1
Q ss_pred CCcEEEeccccccccCHhHHHHHHHHHHhhcccC-c---cCCCCCCcccccccCCCCCcceEEEEEeCcEEEEcCceeEE
Q 017265 249 TPDIVIDSGTTLTFLPQGYNSNLLSVMSSMIEAQ-P---VADPTGSLELCYSFNSLSQVPEVTIHFRGADVKLSRSNFFV 324 (374)
Q Consensus 249 ~~~~iiDSGtt~~~lp~~~~~~i~~~~~~~~~~~-~---~~~~~~~~~~C~~~~~~~~~P~i~f~f~g~~~~l~~~~~~~ 324 (374)
...++||||++.+.++.+..+++ .-..... . ...+..... +. .......++++|..+.+ +++
T Consensus 27 ~~~~LvDTGAs~s~Is~~~a~~l----gl~~~~~~~~~~~~~g~g~~~-~~-----g~~~~~~l~i~~~~~~~---~~~- 92 (124)
T cd05479 27 PVKAFVDSGAQMTIMSKACAEKC----GLMRLIDKRFQGIAKGVGTQK-IL-----GRIHLAQVKIGNLFLPC---SFT- 92 (124)
T ss_pred EEEEEEeCCCceEEeCHHHHHHc----CCccccCcceEEEEecCCCcE-EE-----eEEEEEEEEECCEEeee---EEE-
Confidence 45799999999999999998765 1110000 0 000000000 10 01233444444443221 111
Q ss_pred EeCCCeEEEEEEcCCCCcceechhhhcceEEEEECCCCEEEE
Q 017265 325 KVSEDIVCSVFKGITNSVPIYGNIMQTNFLVGYDIEQQTVSF 366 (374)
Q Consensus 325 ~~~~~~~C~~i~~~~~~~~ilG~~fl~~~y~vfD~~~~riGf 366 (374)
+.+...-..|||..||+.+-.+.|+.+++|-|
T Consensus 93 ----------Vl~~~~~d~ILG~d~L~~~~~~ID~~~~~i~~ 124 (124)
T cd05479 93 ----------VLEDDDVDFLIGLDMLKRHQCVIDLKENVLRI 124 (124)
T ss_pred ----------EECCCCcCEEecHHHHHhCCeEEECCCCEEEC
Confidence 22222456899999999999999999998853
No 32
>PF08284 RVP_2: Retroviral aspartyl protease; InterPro: IPR013242 This region defines single domain aspartyl proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). These proteases are generally part of a larger polyprotein; usually pol, more rarely gag. Retroviral proteases appear to be homologous to a single domain of the two-domain eukaryotic aspartyl proteases.
Probab=94.49 E-value=0.056 Score=44.16 Aligned_cols=97 Identities=23% Similarity=0.373 Sum_probs=56.6
Q ss_pred CCcEEEeccccccccCHhHHHHHHHHHHhhcc-cC---ccCCCCCCcccccccCCCCCcceEEEEEeCcEEEEcCceeEE
Q 017265 249 TPDIVIDSGTTLTFLPQGYNSNLLSVMSSMIE-AQ---PVADPTGSLELCYSFNSLSQVPEVTIHFRGADVKLSRSNFFV 324 (374)
Q Consensus 249 ~~~~iiDSGtt~~~lp~~~~~~i~~~~~~~~~-~~---~~~~~~~~~~~C~~~~~~~~~P~i~f~f~g~~~~l~~~~~~~ 324 (374)
...++||||++-.++.......+ .-.+. .. ......... .|. ...+.+.+.++|.++.... +
T Consensus 32 ~~~vLiDSGAThsFIs~~~a~~~----~l~~~~l~~~~~V~~~g~~~-~~~-----~~~~~~~~~i~g~~~~~dl---~- 97 (135)
T PF08284_consen 32 PASVLIDSGATHSFISSSFAKKL----GLPLEPLPRPIVVSAPGGSI-NCE-----GVCPDVPLSIQGHEFVVDL---L- 97 (135)
T ss_pred EEEEEEecCCCcEEccHHHHHhc----CCEEEEccCeeEEecccccc-ccc-----ceeeeEEEEECCeEEEeee---E-
Confidence 44689999999999998886654 11110 00 000000001 111 1234555555554432211 1
Q ss_pred EeCCCeEEEEEEcCCCCcceechhhhcceEEEEECCCCEEEEecC
Q 017265 325 KVSEDIVCSVFKGITNSVPIYGNIMQTNFLVGYDIEQQTVSFKPT 369 (374)
Q Consensus 325 ~~~~~~~C~~i~~~~~~~~ilG~~fl~~~y~vfD~~~~riGfa~~ 369 (374)
+.+..+-..|||..+|+.+..+-|..+++|-|...
T Consensus 98 ----------vl~l~~~DvILGm~WL~~~~~~IDw~~k~v~f~~p 132 (135)
T PF08284_consen 98 ----------VLDLGGYDVILGMDWLKKHNPVIDWATKTVTFNSP 132 (135)
T ss_pred ----------EecccceeeEeccchHHhCCCEEEccCCEEEEeCC
Confidence 11122357999999999999999999999999754
No 33
>cd05484 retropepsin_like_LTR_2 Retropepsins_like_LTR, pepsin-like aspartate proteases. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate peptidases is classif
Probab=93.28 E-value=0.1 Score=39.31 Aligned_cols=30 Identities=13% Similarity=0.053 Sum_probs=26.2
Q ss_pred EEEEEEecCCCceEEEEEEcCCCceeEecCCC
Q 017265 91 YLIRISIGTPPTERLAVADTGSDLIWTQCEPC 122 (374)
Q Consensus 91 Y~~~i~iGtP~q~~~l~~DTGS~~~Wv~~~~c 122 (374)
|++.+.|+ ++++.+++||||+..++..+.+
T Consensus 1 ~~~~~~In--g~~i~~lvDTGA~~svis~~~~ 30 (91)
T cd05484 1 KTVTLLVN--GKPLKFQLDTGSAITVISEKTW 30 (91)
T ss_pred CEEEEEEC--CEEEEEEEcCCcceEEeCHHHH
Confidence 57899999 8999999999999999966544
No 34
>TIGR03698 clan_AA_DTGF clan AA aspartic protease, AF_0612 family. Members of this protein family are clan AA aspartic proteases, related to family TIGR02281. These proteins resemble retropepsins, pepsin-like proteases of retroviruses such as HIV. Members of this family are found in archaea and bacteria.
Probab=91.93 E-value=0.98 Score=35.19 Aligned_cols=24 Identities=17% Similarity=0.281 Sum_probs=21.2
Q ss_pred CcceechhhhcceEEEEECCCCEE
Q 017265 341 SVPIYGNIMQTNFLVGYDIEQQTV 364 (374)
Q Consensus 341 ~~~ilG~~fl~~~y~vfD~~~~ri 364 (374)
+..+||..||+.+-++.|+.++++
T Consensus 84 ~~~LLG~~~L~~l~l~id~~~~~~ 107 (107)
T TIGR03698 84 DEPLLGTELLEGLGIVIDYRNQGL 107 (107)
T ss_pred CccEecHHHHhhCCEEEehhhCcC
Confidence 478999999999999999987753
No 35
>PF13975 gag-asp_proteas: gag-polyprotein putative aspartyl protease
Probab=91.24 E-value=0.39 Score=34.43 Aligned_cols=35 Identities=20% Similarity=0.242 Sum_probs=30.1
Q ss_pred CCccEEEEEEecCCCceEEEEEEcCCCceeEecCCCC
Q 017265 87 NNANYLIRISIGTPPTERLAVADTGSDLIWTQCEPCP 123 (374)
Q Consensus 87 ~~~~Y~~~i~iGtP~q~~~l~~DTGS~~~Wv~~~~c~ 123 (374)
..+.+++++.|| ++.+.+++|||++...|+...+.
T Consensus 5 ~~g~~~v~~~I~--g~~~~alvDtGat~~fis~~~a~ 39 (72)
T PF13975_consen 5 DPGLMYVPVSIG--GVQVKALVDTGATHNFISESLAK 39 (72)
T ss_pred cCCEEEEEEEEC--CEEEEEEEeCCCcceecCHHHHH
Confidence 457899999999 79999999999999998766544
No 36
>PF00077 RVP: Retroviral aspartyl protease The Prosite entry also includes Pfam:PF00026; InterPro: IPR018061 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to the MEROPS peptidase family A2 (retropepsin family, clan AA), subfamily A2A. The family includes the single domain aspartic proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). Retroviral aspartyl protease is synthesised as part of the POL polyprotein that contains; an aspartyl protease, a reverse transcriptase, RNase H and integrase. POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins.; PDB: 3D3T_B 3SQF_A 1NSO_A 2HB3_A 2HS2_A 2HS1_B 3K4V_A 3GGV_C 1HTG_B 2FDE_A ....
Probab=87.60 E-value=0.87 Score=34.66 Aligned_cols=29 Identities=24% Similarity=0.272 Sum_probs=24.4
Q ss_pred EEEEEecCCCceEEEEEEcCCCceeEecCCC
Q 017265 92 LIRISIGTPPTERLAVADTGSDLIWTQCEPC 122 (374)
Q Consensus 92 ~~~i~iGtP~q~~~l~~DTGS~~~Wv~~~~c 122 (374)
+++|.|. ++++.+++||||+.+-++...+
T Consensus 7 ~i~v~i~--g~~i~~LlDTGA~vsiI~~~~~ 35 (100)
T PF00077_consen 7 YITVKIN--GKKIKALLDTGADVSIISEKDW 35 (100)
T ss_dssp EEEEEET--TEEEEEEEETTBSSEEESSGGS
T ss_pred eEEEeEC--CEEEEEEEecCCCcceeccccc
Confidence 5678888 7899999999999999976544
No 37
>COG3577 Predicted aspartyl protease [General function prediction only]
Probab=87.11 E-value=1.8 Score=37.48 Aligned_cols=80 Identities=14% Similarity=0.156 Sum_probs=57.3
Q ss_pred ccCCccEEEEEEecCCCceEEEEEEcCCCceeEecCCCCCCCCCCCCCCCCCCCCCCCccccCCCCccccCCCCCCCCCC
Q 017265 85 IPNNANYLIRISIGTPPTERLAVADTGSDLIWTQCEPCPPSQCYMQDSPLFDPKMSSTYKSLPCSSSQCASLNQKSCSGV 164 (374)
Q Consensus 85 ~~~~~~Y~~~i~iGtP~q~~~l~~DTGS~~~Wv~~~~c~~~~C~~~~~~~y~p~~SsT~~~~~c~~~~C~~~~~~~C~~~ 164 (374)
...++.|.++..|- +|++..++|||-+.+-+....-. .--||... ..
T Consensus 100 k~~~GHF~a~~~VN--Gk~v~fLVDTGATsVal~~~dA~--------RlGid~~~------l~----------------- 146 (215)
T COG3577 100 KSRDGHFEANGRVN--GKKVDFLVDTGATSVALNEEDAR--------RLGIDLNS------LD----------------- 146 (215)
T ss_pred ecCCCcEEEEEEEC--CEEEEEEEecCcceeecCHHHHH--------HhCCCccc------cC-----------------
Confidence 45689999999998 89999999999999888554322 11233322 11
Q ss_pred cceeeEeeCCCceeeeeEEEEEEEecCCCCCcccCCceE
Q 017265 165 NCQYSVSYGDGSFSNGNLATETVTLGSTTGQAVALPGIT 203 (374)
Q Consensus 165 ~~~~~~~Y~~gs~~~G~~~~D~v~i~~~~~~~~~~~~~~ 203 (374)
.++.+.-++|...--.+-.|.|.||+. .++++.
T Consensus 147 -y~~~v~TANG~~~AA~V~Ld~v~IG~I-----~~~nV~ 179 (215)
T COG3577 147 -YTITVSTANGRARAAPVTLDRVQIGGI-----RVKNVD 179 (215)
T ss_pred -CceEEEccCCccccceEEeeeEEEccE-----EEcCch
Confidence 556677788877656788899999986 555554
No 38
>PF12384 Peptidase_A2B: Ty3 transposon peptidase; InterPro: IPR024650 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Ty3 is a gypsy-type, retrovirus-like, element found in the budding yeast. The Ty3 aspartyl protease is required for processing of the viral polyprotein into its mature species [].
Probab=86.91 E-value=1.3 Score=36.85 Aligned_cols=25 Identities=20% Similarity=0.384 Sum_probs=21.3
Q ss_pred CCCCcEEEeccccccccCHhHHHHH
Q 017265 247 VSTPDIVIDSGTTLTFLPQGYNSNL 271 (374)
Q Consensus 247 ~~~~~~iiDSGtt~~~lp~~~~~~i 271 (374)
.....++||||++..+...++.+.|
T Consensus 43 ~t~i~vLfDSGSPTSfIr~di~~kL 67 (177)
T PF12384_consen 43 GTPIKVLFDSGSPTSFIRSDIVEKL 67 (177)
T ss_pred CcEEEEEEeCCCccceeehhhHHhh
Confidence 3456799999999999999998777
No 39
>PF02160 Peptidase_A3: Cauliflower mosaic virus peptidase (A3); InterPro: IPR000588 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of sequences contain an aspartic peptidase signature that belongs to MEROPS peptidase family A3, subfamily A3A (cauliflower mosaic virus-type endopeptidase, clan AA). Cauliflower mosaic virus belongs to the Retro-transcribing viruses, which have a double-stranded DNA genome. The genome includes an open reading frame (ORF V) that shows similarities to the pol gene of retroviruses. This ORF codes for a polyprotein that includes a reverse transcriptase, which, on the basis of a DTG triplet near the N terminus, was suggested to include an aspartic protease. The presence of an aspartic protease has been confirmed by mutational studies, implicating Asp-45 in catalysis. The protease releases itself from the polyprotein and is involved in reactions required to process the ORF IV polyprotein, which includes the viral coat protein []. The viral aspartic peptidase signature has also been found associated with a polyprotein encoded by integrated pararetrovirus-like sequences in the genome of Nicotiana tabacum (Common tobacco) []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis
Probab=85.51 E-value=1.3 Score=38.48 Aligned_cols=52 Identities=12% Similarity=0.082 Sum_probs=34.2
Q ss_pred CcceEEEEEeCcEEEEcCceeEEEeCCCeEEEEEEcCCCCcceechhhhcceEEEEECCCCEEEEec
Q 017265 302 QVPEVTIHFRGADVKLSRSNFFVKVSEDIVCSVFKGITNSVPIYGNIMQTNFLVGYDIEQQTVSFKP 368 (374)
Q Consensus 302 ~~P~i~f~f~g~~~~l~~~~~~~~~~~~~~C~~i~~~~~~~~ilG~~fl~~~y~vfD~~~~riGfa~ 368 (374)
..+.+.+.++|..|.+|-- ++.+ + +-..|||+.|+|.|+=-...+ .+|-|..
T Consensus 66 ~~~~~~i~I~~~~F~IP~i---Yq~~----------~-g~d~IlG~NF~r~y~Pfiq~~-~~I~f~~ 117 (201)
T PF02160_consen 66 KAKNGKIQIADKIFRIPTI---YQQE----------S-GIDIILGNNFLRLYEPFIQTE-DRIQFHK 117 (201)
T ss_pred EecCceEEEccEEEeccEE---EEec----------C-CCCEEecchHHHhcCCcEEEc-cEEEEEe
Confidence 4567777777777776632 2211 1 468999999999887555554 4677654
No 40
>PF11925 DUF3443: Protein of unknown function (DUF3443); InterPro: IPR021847 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 400 to 434 amino acids in length. This protein has two conserved sequence motifs: NPV and DNNG.
Probab=83.38 E-value=3.3 Score=39.21 Aligned_cols=108 Identities=20% Similarity=0.330 Sum_probs=58.8
Q ss_pred EEEEEEecCCC----ceE-EEEEEcCCCceeEecCCCCCCCCCCCCCCCCCCCCCCCccccCCCCccccCCCCCCCCCCc
Q 017265 91 YLIRISIGTPP----TER-LAVADTGSDLIWTQCEPCPPSQCYMQDSPLFDPKMSSTYKSLPCSSSQCASLNQKSCSGVN 165 (374)
Q Consensus 91 Y~~~i~iGtP~----q~~-~l~~DTGS~~~Wv~~~~c~~~~C~~~~~~~y~p~~SsT~~~~~c~~~~C~~~~~~~C~~~~ 165 (374)
=++.|.|=.|+ |.+ ++++||||.=+=|..+.-. . ...... |..+..-..+. +|
T Consensus 24 p~VsVtVC~PGts~CqTIdnvlVDTGS~GLRi~~sAl~--~---~l~~~L-p~~t~~g~~la------------EC---- 81 (370)
T PF11925_consen 24 PTVSVTVCAPGTSNCQTIDNVLVDTGSYGLRIFASALP--S---SLAGSL-PQQTGGGAPLA------------EC---- 81 (370)
T ss_pred eeeEEEEeCCCCCCceeeCcEEEeccchhhhHHHhhhc--h---hhhccC-CcccCCCcchh------------hh----
Confidence 45666664443 566 7999999998777554321 0 000011 11111111110 11
Q ss_pred ceeeEeeCCCceeeeeEEEEEEEecCCCCCcccCCceEEeee----------eeCCC--Cc-CccccceeecCCC
Q 017265 166 CQYSVSYGDGSFSNGNLATETVTLGSTTGQAVALPGITFGCG----------TNNGG--LF-NSKTTGIVGLGGG 227 (374)
Q Consensus 166 ~~~~~~Y~~gs~~~G~~~~D~v~i~~~~~~~~~~~~~~fg~~----------~~~~~--~~-~~~~~GilGLg~~ 227 (374)
..|++|..+ |-+.+-.|+|++.... .++-|.++-. ..... .. .....||||+|.-
T Consensus 82 ----~~F~sgytW-GsVr~AdV~igge~A~--~iPiQvI~D~~~~~~P~sC~~~g~~~~t~~~lgaNGILGIg~~ 149 (370)
T PF11925_consen 82 ----AQFASGYTW-GSVRTADVTIGGETAS--SIPIQVIGDSAAPSVPSSCSNSGASMNTVADLGANGILGIGPF 149 (370)
T ss_pred ----hhccCcccc-cceEEEEEEEcCeecc--ccCEEEEcCCCCCCCCchhhcCCCCCCCcccccCceEEeecCC
Confidence 467888888 9999999999987322 3333444321 11110 11 4578999999874
No 41
>TIGR02281 clan_AA_DTGA clan AA aspartic protease, TIGR02281 family. This family consists of predicted aspartic proteases, typically from 180 to 230 amino acids in length, in MEROPS clan AA. This model describes the well-conserved 121-residue C-terminal region. The poorly conserved, variable length N-terminal region usually contains a predicted transmembrane helix. Sequences in the seed alignment and those scoring above the trusted cutoff are Proteobacterial; homologs scroing between trusted and noise are found in Pyrobaculum aerophilum str. IM2 (archaeal), Pirellula sp. (Planctomycetes), and Nostoc sp. PCC 7120 (Cyanobacteria).
Probab=82.30 E-value=8 Score=30.74 Aligned_cols=23 Identities=22% Similarity=0.309 Sum_probs=20.3
Q ss_pred CCcEEEeccccccccCHhHHHHH
Q 017265 249 TPDIVIDSGTTLTFLPQGYNSNL 271 (374)
Q Consensus 249 ~~~~iiDSGtt~~~lp~~~~~~i 271 (374)
...++||||.+.+.++.+..+++
T Consensus 22 ~~~flVDTGAs~t~is~~~A~~L 44 (121)
T TIGR02281 22 NVRFLVDTGATSVALNEEDAQRL 44 (121)
T ss_pred EEEEEEECCCCcEEcCHHHHHHc
Confidence 55799999999999999988766
No 42
>cd05482 HIV_retropepsin_like Retropepsins, pepsin-like aspartate proteases. This is a subfamily of retropepsins. The family includes pepsin-like aspartate proteases from retroviruses, retrotransposons and retroelements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This gro
Probab=80.23 E-value=2.4 Score=31.70 Aligned_cols=25 Identities=20% Similarity=0.146 Sum_probs=21.4
Q ss_pred EEEecCCCceEEEEEEcCCCceeEecC
Q 017265 94 RISIGTPPTERLAVADTGSDLIWTQCE 120 (374)
Q Consensus 94 ~i~iGtP~q~~~l~~DTGS~~~Wv~~~ 120 (374)
.+.|+ +|.+.+++|||++++-+...
T Consensus 2 ~~~i~--g~~~~~llDTGAd~Tvi~~~ 26 (87)
T cd05482 2 TLYIN--GKLFEGLLDTGADVSIIAEN 26 (87)
T ss_pred EEEEC--CEEEEEEEccCCCCeEEccc
Confidence 46677 89999999999999999654
No 43
>cd06095 RP_RTVL_H_like Retropepsin of the RTVL_H family of human endogenous retrovirus-like elements. This family includes aspartate proteases from retroelements with LTR (long terminal repeats) including the RTVL_H family of human endogenous retrovirus-like elements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where
Probab=78.45 E-value=2.7 Score=31.15 Aligned_cols=27 Identities=15% Similarity=0.148 Sum_probs=22.2
Q ss_pred EEEecCCCceEEEEEEcCCCceeEecCCC
Q 017265 94 RISIGTPPTERLAVADTGSDLIWTQCEPC 122 (374)
Q Consensus 94 ~i~iGtP~q~~~l~~DTGS~~~Wv~~~~c 122 (374)
.+.|. ++++.+++|||++.+-+.....
T Consensus 2 ~v~In--G~~~~fLvDTGA~~tii~~~~a 28 (86)
T cd06095 2 TITVE--GVPIVFLVDTGATHSVLKSDLG 28 (86)
T ss_pred EEEEC--CEEEEEEEECCCCeEEECHHHh
Confidence 46676 7999999999999999966544
No 44
>COG5550 Predicted aspartyl protease [Posttranslational modification, protein turnover, chaperones]
Probab=73.03 E-value=29 Score=27.62 Aligned_cols=88 Identities=15% Similarity=0.104 Sum_probs=48.5
Q ss_pred cEEEecccc-ccccCHhHHHHHHHHHHhhcccCccCCCCCCcccccccCCCCCcceEEEEEeCcEEEEcCceeEEEeCCC
Q 017265 251 DIVIDSGTT-LTFLPQGYNSNLLSVMSSMIEAQPVADPTGSLELCYSFNSLSQVPEVTIHFRGADVKLSRSNFFVKVSED 329 (374)
Q Consensus 251 ~~iiDSGtt-~~~lp~~~~~~i~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~P~i~f~f~g~~~~l~~~~~~~~~~~~ 329 (374)
..+||||.+ ++.+|.++++++ +....... .-|-. ..-.+.+.+.-+.+.+....+...
T Consensus 28 ~~LiDTGFtg~lvlp~~vaek~--------~~~~~~~~----~~~~a-----~~~~v~t~V~~~~iki~g~e~~~~---- 86 (125)
T COG5550 28 DELIDTGFTGYLVLPPQVAEKL--------GLPLFSTI----RIVLA-----DGGVVKTSVALATIKIDGVEKVAF---- 86 (125)
T ss_pred eeEEecCCceeEEeCHHHHHhc--------CCCccCCh----hhhhh-----cCCEEEEEEEEEEEEECCEEEEEE----
Confidence 358999999 999999999887 22211100 01111 111222222223334433332222
Q ss_pred eEEEEEEcCC-CCcceechhhhcceEEEEECCCCEE
Q 017265 330 IVCSVFKGIT-NSVPIYGNIMQTNFLVGYDIEQQTV 364 (374)
Q Consensus 330 ~~C~~i~~~~-~~~~ilG~~fl~~~y~vfD~~~~ri 364 (374)
+..+. ....+||--.|+....++|....++
T Consensus 87 -----Vl~s~~~~~~liG~~~lk~l~~~vn~~~g~L 117 (125)
T COG5550 87 -----VLASDNLPEPLIGVNLLKLLGLVVNPKTGKL 117 (125)
T ss_pred -----EEccCCCcccchhhhhhhhccEEEcCCcceE
Confidence 11111 3345999999999999999876655
No 45
>PF12384 Peptidase_A2B: Ty3 transposon peptidase; InterPro: IPR024650 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Ty3 is a gypsy-type, retrovirus-like, element found in the budding yeast. The Ty3 aspartyl protease is required for processing of the viral polyprotein into its mature species [].
Probab=65.41 E-value=8.8 Score=32.14 Aligned_cols=30 Identities=13% Similarity=0.144 Sum_probs=23.2
Q ss_pred EEEEEEecCCCceEEEEEEcCCCceeEecC
Q 017265 91 YLIRISIGTPPTERLAVADTGSDLIWTQCE 120 (374)
Q Consensus 91 Y~~~i~iGtP~q~~~l~~DTGS~~~Wv~~~ 120 (374)
=+..+.++.-+.+++++|||||...++...
T Consensus 33 ~T~~v~l~~~~t~i~vLfDSGSPTSfIr~d 62 (177)
T PF12384_consen 33 KTAIVQLNCKGTPIKVLFDSGSPTSFIRSD 62 (177)
T ss_pred cEEEEEEeecCcEEEEEEeCCCccceeehh
Confidence 344555666689999999999999888554
No 46
>PF13975 gag-asp_proteas: gag-polyprotein putative aspartyl protease
Probab=61.43 E-value=7.1 Score=27.79 Aligned_cols=23 Identities=22% Similarity=0.489 Sum_probs=20.4
Q ss_pred CCcEEEeccccccccCHhHHHHH
Q 017265 249 TPDIVIDSGTTLTFLPQGYNSNL 271 (374)
Q Consensus 249 ~~~~iiDSGtt~~~lp~~~~~~i 271 (374)
...+++|||.+-.+++.+..+.+
T Consensus 19 ~~~alvDtGat~~fis~~~a~rL 41 (72)
T PF13975_consen 19 QVKALVDTGATHNFISESLAKRL 41 (72)
T ss_pred EEEEEEeCCCcceecCHHHHHHh
Confidence 34699999999999999998877
No 47
>PF13650 Asp_protease_2: Aspartyl protease
Probab=56.85 E-value=7 Score=28.50 Aligned_cols=23 Identities=17% Similarity=0.491 Sum_probs=20.2
Q ss_pred CCcEEEeccccccccCHhHHHHH
Q 017265 249 TPDIVIDSGTTLTFLPQGYNSNL 271 (374)
Q Consensus 249 ~~~~iiDSGtt~~~lp~~~~~~i 271 (374)
...++||||++.+.+.+++++++
T Consensus 9 ~~~~liDTGa~~~~i~~~~~~~l 31 (90)
T PF13650_consen 9 PVRFLIDTGASISVISRSLAKKL 31 (90)
T ss_pred EEEEEEcCCCCcEEECHHHHHHc
Confidence 45789999999999999998776
No 48
>PF09668 Asp_protease: Aspartyl protease; InterPro: IPR019103 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This family of eukaryotic aspartyl proteases have a fold similar to retroviral proteases which implies they function proteolytically during regulated protein turnover []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 3S8I_A 2I1A_B.
Probab=56.73 E-value=22 Score=28.42 Aligned_cols=23 Identities=13% Similarity=0.281 Sum_probs=18.2
Q ss_pred CCcEEEeccccccccCHhHHHHH
Q 017265 249 TPDIVIDSGTTLTFLPQGYNSNL 271 (374)
Q Consensus 249 ~~~~iiDSGtt~~~lp~~~~~~i 271 (374)
.-.++||||+..+.++....+++
T Consensus 35 ~vkA~VDtGAQ~tims~~~a~r~ 57 (124)
T PF09668_consen 35 PVKAFVDTGAQSTIMSKSCAERC 57 (124)
T ss_dssp EEEEEEETT-SS-EEEHHHHHHT
T ss_pred EEEEEEeCCCCccccCHHHHHHc
Confidence 44799999999999999998775
No 49
>PF09668 Asp_protease: Aspartyl protease; InterPro: IPR019103 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This family of eukaryotic aspartyl proteases have a fold similar to retroviral proteases which implies they function proteolytically during regulated protein turnover []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 3S8I_A 2I1A_B.
Probab=54.74 E-value=22 Score=28.43 Aligned_cols=34 Identities=18% Similarity=0.061 Sum_probs=24.1
Q ss_pred CccEEEEEEecCCCceEEEEEEcCCCceeEecCCCC
Q 017265 88 NANYLIRISIGTPPTERLAVADTGSDLIWTQCEPCP 123 (374)
Q Consensus 88 ~~~Y~~~i~iGtP~q~~~l~~DTGS~~~Wv~~~~c~ 123 (374)
....|++++|+ ++++++++|||...+-+..+-+.
T Consensus 22 v~mLyI~~~in--g~~vkA~VDtGAQ~tims~~~a~ 55 (124)
T PF09668_consen 22 VSMLYINCKIN--GVPVKAFVDTGAQSTIMSKSCAE 55 (124)
T ss_dssp ----EEEEEET--TEEEEEEEETT-SS-EEEHHHHH
T ss_pred cceEEEEEEEC--CEEEEEEEeCCCCccccCHHHHH
Confidence 44689999999 89999999999999988665433
No 50
>cd06094 RP_Saci_like RP_Saci_like, retropepsin family. Retropepsin on retrotransposons with long terminal repeats (LTR) including Saci-1, -2 and -3 of Schistosoma mansoni. Retropepsins are related to fungal and mammalian pepsins. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified
Probab=53.94 E-value=67 Score=24.06 Aligned_cols=23 Identities=22% Similarity=0.469 Sum_probs=18.7
Q ss_pred CCCCcEEEeccccccccCHhHHH
Q 017265 247 VSTPDIVIDSGTTLTFLPQGYNS 269 (374)
Q Consensus 247 ~~~~~~iiDSGtt~~~lp~~~~~ 269 (374)
.++...+||||.....+|....+
T Consensus 7 ~s~~~fLVDTGA~vSviP~~~~~ 29 (89)
T cd06094 7 TSGLRFLVDTGAAVSVLPASSTK 29 (89)
T ss_pred CCCcEEEEeCCCceEeecccccc
Confidence 45567899999999999977644
No 51
>cd05483 retropepsin_like_bacteria Bacterial aspartate proteases, retropepsin-like protease family. This family of bacteria aspartate proteases is a subfamily of retropepsin-like protease family, which includes enzymes from retrovirus and retrotransposons. While fungal and mammalian pepsin-like aspartate proteases are bilobal proteins with structurally related N- and C-termini, this family of bacteria aspartate proteases is half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate proteases is classified by MEROPS as the peptidase family A2 (retropepsin family, clan AA), subfamily A2A.
Probab=49.05 E-value=13 Score=27.30 Aligned_cols=24 Identities=17% Similarity=0.394 Sum_probs=20.0
Q ss_pred CCCcEEEeccccccccCHhHHHHH
Q 017265 248 STPDIVIDSGTTLTFLPQGYNSNL 271 (374)
Q Consensus 248 ~~~~~iiDSGtt~~~lp~~~~~~i 271 (374)
....++||||++.+.++.+..+.+
T Consensus 12 ~~~~~llDTGa~~s~i~~~~~~~l 35 (96)
T cd05483 12 QPVRFLLDTGASTTVISEELAERL 35 (96)
T ss_pred EEEEEEEECCCCcEEcCHHHHHHc
Confidence 345789999999999999887665
No 52
>cd05484 retropepsin_like_LTR_2 Retropepsins_like_LTR, pepsin-like aspartate proteases. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate peptidases is classif
Probab=48.03 E-value=13 Score=27.54 Aligned_cols=23 Identities=17% Similarity=0.346 Sum_probs=20.3
Q ss_pred CCcEEEeccccccccCHhHHHHH
Q 017265 249 TPDIVIDSGTTLTFLPQGYNSNL 271 (374)
Q Consensus 249 ~~~~iiDSGtt~~~lp~~~~~~i 271 (374)
...+++|||++.+.++++.+..+
T Consensus 11 ~i~~lvDTGA~~svis~~~~~~l 33 (91)
T cd05484 11 PLKFQLDTGSAITVISEKTWRKL 33 (91)
T ss_pred EEEEEEcCCcceEEeCHHHHHHh
Confidence 44689999999999999998877
No 53
>cd05481 retropepsin_like_LTR_1 Retropepsins_like_LTR; pepsin-like aspartate protease from retrotransposons with long terminal repeats. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N and C-terminals, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identifi
Probab=41.88 E-value=21 Score=26.88 Aligned_cols=24 Identities=17% Similarity=0.029 Sum_probs=18.7
Q ss_pred EEecCCC-ceEEEEEEcCCCceeEecC
Q 017265 95 ISIGTPP-TERLAVADTGSDLIWTQCE 120 (374)
Q Consensus 95 i~iGtP~-q~~~l~~DTGS~~~Wv~~~ 120 (374)
+.|. + +++++.+|||++..-++-.
T Consensus 3 ~~i~--g~~~v~~~vDtGA~vnllp~~ 27 (93)
T cd05481 3 MKIN--GKQSVKFQLDTGATCNVLPLR 27 (93)
T ss_pred eEeC--CceeEEEEEecCCEEEeccHH
Confidence 4454 5 8999999999998877543
No 54
>cd01206 Homer Homer type EVH1 domain. Homer type EVH1 domain. Homer is a synaptic scaffolding protein, involved in neuronal signaling. It contains an EVH1 domain, which binds to both neurotransmitter receptors, such as the metabotropic glutamate receptor (mGluR) and to other scaffolding proteins via PPXXF motifs, in order to target them to the synaptic junction. It has a PH-like fold, despite having minimal sequence similarity to PH or PTB domains.
Probab=39.20 E-value=74 Score=24.78 Aligned_cols=46 Identities=22% Similarity=0.374 Sum_probs=28.6
Q ss_pred EEEecCCCCCcccCCceEEeeeeeCCCCc-CccccceeecCCCcchhhHHhh
Q 017265 186 TVTLGSTTGQAVALPGITFGCGTNNGGLF-NSKTTGIVGLGGGDISLISQMR 236 (374)
Q Consensus 186 ~v~i~~~~~~~~~~~~~~fg~~~~~~~~~-~~~~~GilGLg~~~~s~~~ql~ 236 (374)
.+-|... ..++..|--++..-+.+ ......+.|||++.-.-.+++.
T Consensus 54 ~~iINc~-----i~~~~~y~kas~~FhQWrD~R~~tVyGLnF~Sk~ea~~F~ 100 (111)
T cd01206 54 KAIINST-----ITPNMTFTKTSQKFGQWADSRANTVYGLGFSSEQQLTKFA 100 (111)
T ss_pred EEEEecc-----ccCCcceeecccccccccccccceeeecccCCHHHHHHHH
Confidence 5555554 56666665555554445 4445699999998765444443
No 55
>PF05984 Cytomega_UL20A: Cytomegalovirus UL20A protein; InterPro: IPR009245 This family consists of several Cytomegalovirus UL20A proteins. UL20A is thought to be a glycoprotein [].
Probab=34.99 E-value=48 Score=24.24 Aligned_cols=8 Identities=38% Similarity=0.197 Sum_probs=3.7
Q ss_pred CcchhhHH
Q 017265 1 MATFLSCV 8 (374)
Q Consensus 1 M~~~~~~~ 8 (374)
|...++|+
T Consensus 1 MaRRlwiL 8 (100)
T PF05984_consen 1 MARRLWIL 8 (100)
T ss_pred CchhhHHH
Confidence 55554333
No 56
>TIGR03698 clan_AA_DTGF clan AA aspartic protease, AF_0612 family. Members of this protein family are clan AA aspartic proteases, related to family TIGR02281. These proteins resemble retropepsins, pepsin-like proteases of retroviruses such as HIV. Members of this family are found in archaea and bacteria.
Probab=33.72 E-value=55 Score=25.25 Aligned_cols=65 Identities=17% Similarity=0.160 Sum_probs=39.6
Q ss_pred EEEEecCCCc----eEEEEEEcCCCcee-EecCCCCCCCCCCCCCCCCCCCCCCCccccCCCCccccCCCCCCCCCCcce
Q 017265 93 IRISIGTPPT----ERLAVADTGSDLIW-TQCEPCPPSQCYMQDSPLFDPKMSSTYKSLPCSSSQCASLNQKSCSGVNCQ 167 (374)
Q Consensus 93 ~~i~iGtP~q----~~~l~~DTGS~~~W-v~~~~c~~~~C~~~~~~~y~p~~SsT~~~~~c~~~~C~~~~~~~C~~~~~~ 167 (374)
+++.|..|.| ++.+++|||.+..- ++...-. . -...+. ..
T Consensus 2 ~~v~~~~p~~~~~~~v~~LVDTGat~~~~l~~~~a~-------~-lgl~~~---------------------------~~ 46 (107)
T TIGR03698 2 LDVELSNPKNPEFMEVRALVDTGFSGFLLVPPDIVN-------K-LGLPEL---------------------------DQ 46 (107)
T ss_pred EEEEEeCCCCCCceEEEEEEECCCCeEEecCHHHHH-------H-cCCCcc---------------------------cC
Confidence 5778887733 67899999999664 4433211 0 011111 12
Q ss_pred eeEeeCCCceeeeeEEEEEEEecCC
Q 017265 168 YSVSYGDGSFSNGNLATETVTLGST 192 (374)
Q Consensus 168 ~~~~Y~~gs~~~G~~~~D~v~i~~~ 192 (374)
..+.-++|....-....++|.+++.
T Consensus 47 ~~~~tA~G~~~~~~v~~~~v~igg~ 71 (107)
T TIGR03698 47 RRVYLADGREVLTDVAKASIIINGL 71 (107)
T ss_pred cEEEecCCcEEEEEEEEEEEEECCE
Confidence 2455577765556678899999875
No 57
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=33.27 E-value=25 Score=26.73 Aligned_cols=12 Identities=17% Similarity=0.318 Sum_probs=5.2
Q ss_pred CcchhhHHHHHHH
Q 017265 1 MATFLSCVFILFF 13 (374)
Q Consensus 1 M~~~~~~~~~~~~ 13 (374)
|.+- +++||.++
T Consensus 1 MaSK-~~llL~l~ 12 (95)
T PF07172_consen 1 MASK-AFLLLGLL 12 (95)
T ss_pred Cchh-HHHHHHHH
Confidence 6644 33444333
No 58
>cd05481 retropepsin_like_LTR_1 Retropepsins_like_LTR; pepsin-like aspartate protease from retrotransposons with long terminal repeats. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N and C-terminals, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identifi
Probab=32.85 E-value=31 Score=25.93 Aligned_cols=23 Identities=26% Similarity=0.473 Sum_probs=20.3
Q ss_pred CCcEEEeccccccccCHhHHHHH
Q 017265 249 TPDIVIDSGTTLTFLPQGYNSNL 271 (374)
Q Consensus 249 ~~~~iiDSGtt~~~lp~~~~~~i 271 (374)
.-.+.+|||++...+|...++.+
T Consensus 10 ~v~~~vDtGA~vnllp~~~~~~l 32 (93)
T cd05481 10 SVKFQLDTGATCNVLPLRWLKSL 32 (93)
T ss_pred eEEEEEecCCEEEeccHHHHhhh
Confidence 44688999999999999998877
No 59
>cd05476 pepsin_A_like_plant Chroloplast Nucleoids DNA-binding Protease and Nucellin, pepsin-like aspartic proteases from plants. This family contains pepsin like aspartic proteases from plants including Chloroplast Nucleoids DNA-binding Protease and Nucellin. Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco and Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The enzymes specifically cleave bonds in peptides which
Probab=31.74 E-value=73 Score=28.79 Aligned_cols=18 Identities=17% Similarity=0.266 Sum_probs=14.7
Q ss_pred eEEEEEEcCCCceeEecC
Q 017265 103 ERLAVADTGSDLIWTQCE 120 (374)
Q Consensus 103 ~~~l~~DTGS~~~Wv~~~ 120 (374)
...+++|||++++.++..
T Consensus 176 ~~~ai~DTGTs~~~lp~~ 193 (265)
T cd05476 176 SGGTIIDSGTTLTYLPDP 193 (265)
T ss_pred CCcEEEeCCCcceEcCcc
Confidence 346899999999998654
No 60
>cd05475 nucellin_like Nucellins, plant aspartic proteases specifically expressed in nucellar cells during degradation. Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. This degradation is a characteristic of programmed cell death. Nucellins are plant aspartic proteases specifically expressed in nucellar cells during degradation. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region, and two other regions nearly identical to two regions of plant aspartic proteases. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. Although the three-dimensional structures of the two lobes are very similar, the amino acid sequences are more d
Probab=31.59 E-value=78 Score=28.81 Aligned_cols=32 Identities=16% Similarity=0.168 Sum_probs=22.7
Q ss_pred ccEEEE---EEecC---CCceEEEEEEcCCCceeEecC
Q 017265 89 ANYLIR---ISIGT---PPTERLAVADTGSDLIWTQCE 120 (374)
Q Consensus 89 ~~Y~~~---i~iGt---P~q~~~l~~DTGS~~~Wv~~~ 120 (374)
..|.++ |.||. +.....++||||++++.+|..
T Consensus 157 ~~y~v~l~~i~vg~~~~~~~~~~~ivDTGTt~t~lp~~ 194 (273)
T cd05475 157 KHYSPGPASLLFNGQPTGGKGLEVVFDSGSSYTYFNAQ 194 (273)
T ss_pred CeEEEeEeEEEECCEECcCCCceEEEECCCceEEcCCc
Confidence 456654 68873 223457999999999999754
No 61
>PF14757 NSP2-B_epitope: Immunogenic region of nsp2 protein of arterivirus polyprotein
Probab=27.70 E-value=64 Score=28.38 Aligned_cols=69 Identities=19% Similarity=0.286 Sum_probs=43.3
Q ss_pred ccccceeecCCCcch-hhHHhhhhcCCc--------------ee-cCCCCCcEEEeccccccccCHhHHHHHHHHHHhhc
Q 017265 216 SKTTGIVGLGGGDIS-LISQMRTTIAGN--------------QR-LGVSTPDIVIDSGTTLTFLPQGYNSNLLSVMSSMI 279 (374)
Q Consensus 216 ~~~~GilGLg~~~~s-~~~ql~~~~~~~--------------k~-~~~~~~~~iiDSGtt~~~lp~~~~~~i~~~~~~~~ 279 (374)
....||||.+..... ..+.+...++.. +. ......++|||+|.+...--.++-+..+..+.+++
T Consensus 169 ~q~~~~l~~~~~eaeevls~~sd~~~d~~~a~~Ssssslssv~itRPk~SaQAiIdsGGPcsghlq~~Ke~cl~imreAC 248 (272)
T PF14757_consen 169 PQNMGVLEVGGQEAEEVLSEISDILDDINPAPASSSSSLSSVRITRPKYSAQAIIDSGGPCSGHLQEEKEACLSIMREAC 248 (272)
T ss_pred cccccccccCchhHHHHHHhhhhccccccccccccCCCccceeeccCccchhhhhccCCCchHHHHHHHHHHHHHHHHhc
Confidence 456699999876543 333343333333 11 12346789999999998777777777777677776
Q ss_pred ccCcc
Q 017265 280 EAQPV 284 (374)
Q Consensus 280 ~~~~~ 284 (374)
.+...
T Consensus 249 da~kl 253 (272)
T PF14757_consen 249 DATKL 253 (272)
T ss_pred Ccccc
Confidence 55443
No 62
>cd05471 pepsin_like Pepsin-like aspartic proteases, bilobal enzymes that cleave bonds in peptides at acidic pH. Pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, renin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (renin, cathepsin D and E, pepsin) or commercially (chymosin) important. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Aspartate residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. Most members of the pepsin family specifically cleave bonds in peptides that are at least six residues in length, with hydrophobic residu
Probab=26.28 E-value=72 Score=28.69 Aligned_cols=36 Identities=22% Similarity=0.367 Sum_probs=26.1
Q ss_pred CccEEEE---EEecC-----CCceEEEEEEcCCCceeEecCCCC
Q 017265 88 NANYLIR---ISIGT-----PPTERLAVADTGSDLIWTQCEPCP 123 (374)
Q Consensus 88 ~~~Y~~~---i~iGt-----P~q~~~l~~DTGS~~~Wv~~~~c~ 123 (374)
...|.+. |.||. ......++||||++.+|+|..-+.
T Consensus 179 ~~~~~v~l~~i~v~~~~~~~~~~~~~~iiDsGt~~~~lp~~~~~ 222 (283)
T cd05471 179 PGYWQVPLDGISVGGKSVISSSGGGGAIVDSGTSLIYLPSSVYD 222 (283)
T ss_pred CCEEEEEeCeEEECCceeeecCCCcEEEEecCCCCEeCCHHHHH
Confidence 4556654 56764 245678999999999999876443
No 63
>cd06097 Aspergillopepsin_like Aspergillopepsin_like, aspartic proteases of fungal origin. The members of this family are aspartic proteases of fungal origin, including aspergillopepsin, rhizopuspepsin, endothiapepsin, and rodosporapepsin. The various fungal species in this family may be the most economically important genus of fungi. They may serve as virulence factors or as industrial aids. For example, Aspergillopepsin from A. fumigatus is involved in invasive aspergillosis owing to its elastolytic activity and Aspergillopepsins from the mold A. saitoi are used in fermentation industry. Aspartic proteinases are a group of proteolytic enzymes in which the scissile peptide bond is attacked by a nucleophilic water molecule activated by two aspartic residues in a DT(S)G motif at the active site. They have a similar fold composed of two beta-barrel domains. Between the N-terminal and C-terminal domains, each of which contributes one catalytic aspartic residue, there is an extended active-
Probab=25.39 E-value=71 Score=29.07 Aligned_cols=35 Identities=23% Similarity=0.279 Sum_probs=24.4
Q ss_pred CccEEEE---EEecC----CCceEEEEEEcCCCceeEecCCC
Q 017265 88 NANYLIR---ISIGT----PPTERLAVADTGSDLIWTQCEPC 122 (374)
Q Consensus 88 ~~~Y~~~---i~iGt----P~q~~~l~~DTGS~~~Wv~~~~c 122 (374)
...|.++ |.||. ......++||||++.+++|...+
T Consensus 176 ~~~w~v~l~~i~v~~~~~~~~~~~~~iiDSGTs~~~lP~~~~ 217 (278)
T cd06097 176 SGFWQFTSTSYTVGGDAPWSRSGFSAIADTGTTLILLPDAIV 217 (278)
T ss_pred CcEEEEEEeeEEECCcceeecCCceEEeecCCchhcCCHHHH
Confidence 4556554 56763 23556799999999999987543
No 64
>PF08284 RVP_2: Retroviral aspartyl protease; InterPro: IPR013242 This region defines single domain aspartyl proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). These proteases are generally part of a larger polyprotein; usually pol, more rarely gag. Retroviral proteases appear to be homologous to a single domain of the two-domain eukaryotic aspartyl proteases.
Probab=24.96 E-value=1.1e+02 Score=24.84 Aligned_cols=30 Identities=10% Similarity=0.063 Sum_probs=24.9
Q ss_pred ccEEEEEEecCCCceEEEEEEcCCCceeEecC
Q 017265 89 ANYLIRISIGTPPTERLAVADTGSDLIWTQCE 120 (374)
Q Consensus 89 ~~Y~~~i~iGtP~q~~~l~~DTGS~~~Wv~~~ 120 (374)
..-.+.+.|. .++..++||+|+...+|...
T Consensus 20 ~vi~g~~~I~--~~~~~vLiDSGAThsFIs~~ 49 (135)
T PF08284_consen 20 DVITGTFLIN--SIPASVLIDSGATHSFISSS 49 (135)
T ss_pred CeEEEEEEec--cEEEEEEEecCCCcEEccHH
Confidence 4577888888 58999999999999988554
No 65
>cd00303 retropepsin_like Retropepsins; pepsin-like aspartate proteases. The family includes pepsin-like aspartate proteases from retroviruses, retrotransposons and retroelements, as well as eukaryotic dna-damage-inducible proteins (DDIs), and bacterial aspartate peptidases. While fungal and mammalian pepsins are bilobal proteins with structurally related N and C-terminals, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples
Probab=24.22 E-value=72 Score=21.76 Aligned_cols=22 Identities=18% Similarity=0.261 Sum_probs=16.0
Q ss_pred EEEecCCCceEEEEEEcCCCceeE
Q 017265 94 RISIGTPPTERLAVADTGSDLIWT 117 (374)
Q Consensus 94 ~i~iGtP~q~~~l~~DTGS~~~Wv 117 (374)
.+.++ +..+..++|||+...-+
T Consensus 2 ~~~~~--~~~~~~liDtgs~~~~~ 23 (92)
T cd00303 2 KGKIN--GVPVRALVDSGASVNFI 23 (92)
T ss_pred EEEEC--CEEEEEEEcCCCccccc
Confidence 34555 47889999999886543
No 66
>COG5510 Predicted small secreted protein [Function unknown]
Probab=23.90 E-value=61 Score=20.59 Aligned_cols=21 Identities=5% Similarity=0.113 Sum_probs=8.4
Q ss_pred CcchhhHHHHHHHHHHhhccc
Q 017265 1 MATFLSCVFILFFLCFYVVSP 21 (374)
Q Consensus 1 M~~~~~~~~~~~~~~~~~~~~ 21 (374)
|+.+..+++++++.++.+.++
T Consensus 2 mk~t~l~i~~vll~s~llaaC 22 (44)
T COG5510 2 MKKTILLIALVLLASTLLAAC 22 (44)
T ss_pred chHHHHHHHHHHHHHHHHHHh
Confidence 444433333333344443333
No 67
>cd06098 phytepsin Phytepsin, a plant homolog of mammalian lysosomal pepsins. Phytepsin, a plant homolog of mammalian lysosomal pepsins, resides in grains, roots, stems, leaves and flowers. Phytepsin may participate in metabolic turnover and in protein processing events. In addition, it highly expressed in several plant tissues undergoing apoptosis. Phytepsin contains an internal region consisting of about 100 residues not present in animal or microbial pepsins. This region is thus called a plant specific insert. The insert is highly similar to saponins, which are lysosomal sphingolipid-activating proteins in mammalian cells. The saponin-like domain may have a role in the vacuolar targeting of phytepsin. Phytepsin, as its animal counterparts, possesses a topology typical of all aspartic proteases. They are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe has probably evolved fro
Probab=23.87 E-value=87 Score=29.20 Aligned_cols=32 Identities=22% Similarity=0.334 Sum_probs=22.4
Q ss_pred ccEEEE---EEecCC-----CceEEEEEEcCCCceeEecC
Q 017265 89 ANYLIR---ISIGTP-----PTERLAVADTGSDLIWTQCE 120 (374)
Q Consensus 89 ~~Y~~~---i~iGtP-----~q~~~l~~DTGS~~~Wv~~~ 120 (374)
..|.++ |.||.. .+...++||||++.+++|..
T Consensus 188 ~~w~v~l~~i~v~g~~~~~~~~~~~aivDTGTs~~~lP~~ 227 (317)
T cd06098 188 GYWQFEMGDVLIGGKSTGFCAGGCAAIADSGTSLLAGPTT 227 (317)
T ss_pred cEEEEEeCeEEECCEEeeecCCCcEEEEecCCcceeCCHH
Confidence 455554 677742 23357999999999998764
No 68
>PF08194 DIM: DIM protein; InterPro: IPR013172 Drosophila immune-induced molecules (DIMs) are short proteins induced during the immune response of Drosophila []. This entry includes DIMs 1 to 4 and DIM23.
Probab=21.94 E-value=97 Score=18.90 Aligned_cols=16 Identities=31% Similarity=0.515 Sum_probs=7.6
Q ss_pred CcchhhHHHHHHHHHHh
Q 017265 1 MATFLSCVFILFFLCFY 17 (374)
Q Consensus 1 M~~~~~~~~~~~~~~~~ 17 (374)
|+.+ ++++++.+++++
T Consensus 1 Mk~l-~~a~~l~lLal~ 16 (36)
T PF08194_consen 1 MKCL-SLAFALLLLALA 16 (36)
T ss_pred Ccee-HHHHHHHHHHHH
Confidence 5533 454455555444
Done!