BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017266
(374 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2PQ6|A Chain A, Crystal Structure Of Medicago Truncatula Ugt85h2- Insights
Into The Structural Basis Of A Multifunctional (Iso)
Flavonoid Glycosyltransferase
Length = 482
Score = 178 bits (452), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 108/376 (28%), Positives = 178/376 (47%), Gaps = 22/376 (5%)
Query: 12 FIEQVKESNDCEQISCVITDVTVGWALEIAEQMGIARAAVVTFAPAYLPLVLHIPKLVDA 71
+ ++ S + ++C+++D + + ++ AE+ + + + L V+H V+
Sbjct: 106 LLTRLNHSTNVPPVTCLVSDCCMSFTIQAAEEFELPNVLYFSSSACSLLNVMHFRSFVER 165
Query: 72 GILDSTGNATSDELILLSE-DTLPWKKN---EYIWSFPSQPDVQKLYFEATSAVAQSLKI 127
GI+ + L ++ D +P KN + I F + + E VA +
Sbjct: 166 GIIPFKDESYLTNGCLETKVDWIPGLKNFRLKDIVDFIRTTNPNDIMLEFFIEVADRVNK 225
Query: 128 SNWILCNSFYELDSPACD----LVPNILTIGPL---LGSDHSEHSA----INFWPEDSTC 176
IL N+F EL+S + +P+I IGPL L H N W ED+ C
Sbjct: 226 DTTILLNTFNELESDVINALSSTIPSIYPIGPLPSLLKQTPQIHQLDSLDSNLWKEDTEC 285
Query: 177 LSWLDKQAIGSVIYVAFGSXXXXXXXXXXXXXXXXXXXHQPFLWVVRPDFMNRSHAKLPD 236
L WL+ + GSV+YV FGS + FLW++RPD +
Sbjct: 286 LDWLESKEPGSVVYVNFGSTTVMTPEQLLEFAWGLANCKKSFLWIIRPDLVIGGSVIFSS 345
Query: 237 GFVERVSDRGKFVEWAPQEKVLGHPSVACFLSHCGWNSSIEGLSMGVPFLCWPYFVDQYQ 296
F ++DRG W PQ+KVL HPS+ FL+HCGWNS+ E + GVP LCWP+F DQ
Sbjct: 346 EFTNEIADRGLIASWCPQDKVLNHPSIGGFLTHCGWNSTTESICAGVPMLCWPFFADQPT 405
Query: 297 NRNYICDAWKVGSQFFPDENGIITRQEIYNRVKALLNDD---GIKANALKMKEMARKSLG 353
+ +IC+ W++G + D N + R+E+ + ++ D +K A+++K+ A ++
Sbjct: 406 DCRFICNEWEIGMEI--DTN--VKREELAKLINEVIAGDKGKKMKQKAMELKKKAEENTR 461
Query: 354 EGGSSFRNFESFISQL 369
GG S+ N I +
Sbjct: 462 PGGCSYMNLNKVIKDV 477
>pdb|2VCE|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VCH|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VG8|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
Length = 480
Score = 141 bits (355), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 83/262 (31%), Positives = 131/262 (50%), Gaps = 27/262 (10%)
Query: 122 AQSLKISNWILCNSFYELDSPACDLV-------PNILTIGPLLGSDHSEHSAINFWPEDS 174
+ K + IL N+F+EL+ A + P + +GPL+ E E+S
Sbjct: 201 TKRYKEAEGILVNTFFELEPNAIKALQEPGLDKPPVYPVGPLVNIGKQEAKQT----EES 256
Query: 175 TCLSWLDKQAIGSVIYVAFGSXXXXXXXXXXXXXXXXXXXHQPFLWVVR-PDFMNRS--- 230
CL WLD Q +GSV+YV+FGS Q FLWV+R P + S
Sbjct: 257 ECLKWLDNQPLGSVLYVSFGSGGTLTCEQLNELALGLADSEQRFLWVIRSPSGIANSSYF 316
Query: 231 --HAK------LPDGFVERVSDRGKFVE-WAPQEKVLGHPSVACFLSHCGWNSSIEGLSM 281
H++ LP GF+ER RG + WAPQ +VL HPS FL+HCGWNS++E +
Sbjct: 317 DSHSQTDPLTFLPPGFLERTKKRGFVIPFWAPQAQVLAHPSTGGFLTHCGWNSTLESVVS 376
Query: 282 GVPFLCWPYFVDQYQNRNYICDAWKVGSQFFPDENGIITRQEIYNRVKALLNDD---GIK 338
G+P + WP + +Q N + + + + ++G++ R+E+ VK L+ + G++
Sbjct: 377 GIPLIAWPLYAEQKMNAVLLSEDIRAALRPRAGDDGLVRREEVARVVKGLMEGEEGKGVR 436
Query: 339 ANALKMKEMARKSLGEGGSSFR 360
++KE A + L + G+S +
Sbjct: 437 NKMKELKEAACRVLKDDGTSTK 458
>pdb|2C1X|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C1Z|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C9Z|A Chain A, Structure And Activity Of A Flavonoid 3-0
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
Length = 456
Score = 135 bits (340), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 95/351 (27%), Positives = 167/351 (47%), Gaps = 25/351 (7%)
Query: 25 ISCVITDVTVGWALEIAEQMGIARAAVVTFAPAYLPLVLHIPKLVDAGILDSTGNATSDE 84
+SC++ D + +A ++A +MG+A T P L ++I ++ + I S DE
Sbjct: 113 VSCLVADAFIWFAADMAAEMGVAWLPFWTAGPNSLSTHVYIDEIREK-IGVSGIQGREDE 171
Query: 85 LI--LLSEDTLPWKKNEYIWSFPSQPDVQKLYFEATSAVAQSLKISNWILCNSFYELD-S 141
L+ + + ++ + F ++ L+ + Q L + + NSF ELD S
Sbjct: 172 LLNFIPGMSKVRFRDLQEGIVFG---NLNSLFSRMLHRMGQVLPKATAVFINSFEELDDS 228
Query: 142 PACDL---VPNILTIGPLLGSDHSEHSAINFWPEDSTCLSWLDKQAIGSVIYVAFGSXXX 198
DL + L IGP + + P + CL WL ++ SV+Y++FG+
Sbjct: 229 LTNDLKSKLKTYLNIGPF-----NLITPPPVVPNTTGCLQWLKERKPTSVVYISFGTVTT 283
Query: 199 XXXXXXXXXXXXXXXXHQPFLWVVRPDFMNRSHAKLPDGFVERVSDRGKFVEWAPQEKVL 258
PF+W +R +++ LP+GF+E+ G V WAPQ +VL
Sbjct: 284 PPPAEVVALSEALEASRVPFIWSLR----DKARVHLPEGFLEKTRGYGMVVPWAPQAEVL 339
Query: 259 GHPSVACFLSHCGWNSSIEGLSMGVPFLCWPYFVDQYQNRNYICDAWKVGSQFFPDENGI 318
H +V F++HCGWNS E ++ GVP +C P+F DQ N + D ++G + E G+
Sbjct: 340 AHEAVGAFVTHCGWNSLWESVAGGVPLICRPFFGDQRLNGRMVEDVLEIGVRI---EGGV 396
Query: 319 ITRQEIYNRVKALLNDD---GIKANALKMKEMARKSLGEGGSSFRNFESFI 366
T+ + + +L+ + ++ N ++E A +++G GSS NF + +
Sbjct: 397 FTKSGLMSCFDQILSQEKGKKLRENLRALRETADRAVGPKGSSTENFITLV 447
>pdb|3HBF|A Chain A, Structure Of Ugt78g1 Complexed With Myricetin And Udp
pdb|3HBJ|A Chain A, Structure Of Ugt78g1 Complexed With Udp
Length = 454
Score = 120 bits (300), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 98/373 (26%), Positives = 165/373 (44%), Gaps = 40/373 (10%)
Query: 10 KNFIEQVKES--NDCEQISCVITDVTVGWALEIAEQMGIARAAVVTFAPAYLPLVLHIPK 67
+NF + E+ + I+C++TD + ++AE+M + T P L +
Sbjct: 101 ENFKHVIDEAVAETGKNITCLVTDAFFWFGADLAEEMHAKWVPLWTAGPHSL-----LTH 155
Query: 68 LVDAGILDSTGNATSDELILLSEDTLPWKKNEYIWSFPSQ--PDVQKLYFEATSAVAQSL 125
+ I + TG+ ++ S D LP P D+ + + L
Sbjct: 156 VYTDLIREKTGSKEVHDV--KSIDVLPGFPELKASDLPEGVIKDIDVPFATMLHKMGLEL 213
Query: 126 KISNWILCNSFYELDSPACDLVPN--------ILTIGPL-LGSDHSEHSAINFWPEDSTC 176
+N + NSF + L+ N +L +GP L + + S ++ C
Sbjct: 214 PRANAVAINSFATIHP----LIENELNSKFKLLLNVGPFNLTTPQRKVS------DEHGC 263
Query: 177 LSWLDKQAIGSVIYVAFGSXXXXXXXXXXXXXXXXXXXHQPFLWVVRPDFMNRSHAKLPD 236
L WLD+ SV+Y++FGS PF+W R D KLP
Sbjct: 264 LEWLDQHENSSVVYISFGSVVTPPPHELTALAESLEECGFPFIWSFRGD----PKEKLPK 319
Query: 237 GFVERVSDRGKFVEWAPQEKVLGHPSVACFLSHCGWNSSIEGLSMGVPFLCWPYFVDQYQ 296
GF+ER +GK V WAPQ ++L H SV FL+H GWNS +E + GVP + P+F DQ
Sbjct: 320 GFLERTKTKGKIVAWAPQVEILKHSSVGVFLTHSGWNSVLECIVGGVPMISRPFFGDQGL 379
Query: 297 NRNYICDAWKVGSQFFPDENGIITRQEIYNRVKALLNDDG---IKANALKMKEMARKSLG 353
N ++G +NG++T++ I ++ ++ + ++ +K+KE A K++
Sbjct: 380 NTILTESVLEIGVGV---DNGVLTKESIKKALELTMSSEKGGIMRQKIVKLKESAFKAVE 436
Query: 354 EGGSSFRNFESFI 366
+ G+S +F + I
Sbjct: 437 QNGTSAMDFTTLI 449
>pdb|2ACV|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1
pdb|2ACV|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1
Length = 463
Score = 112 bits (281), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 78/270 (28%), Positives = 126/270 (46%), Gaps = 22/270 (8%)
Query: 117 ATSAVAQSLKISNWILCNSFYELDSPACDL-------VPNILTIGPLLGSDHSEHSAINF 169
A +A+ + + I+ N+F +L+ + D +P I +GPLL + ++
Sbjct: 201 AYYKLAERFRDTKGIIVNTFSDLEQSSIDALYDHDEKIPPIYAVGPLLDLKGQPNPKLDQ 260
Query: 170 WPEDSTCLSWLDKQAIGSVIYVAFGSXXXXXXXXXXXXXXXXXXXHQ-PFLWVVRPDFMN 228
D L WLD+Q SV+++ FGS FLW N
Sbjct: 261 AQHD-LILKWLDEQPDKSVVFLCFGSMGVSFGPSQIREIALGLKHSGVRFLW------SN 313
Query: 229 RSHAKL-PDGFVE--RVSDRGKFVEWAPQEKVLGHPSVACFLSHCGWNSSIEGLSMGVPF 285
+ K+ P+GF+E + +G WAPQ +VL H ++ F+SHCGWNS +E + GVP
Sbjct: 314 SAEKKVFPEGFLEWMELEGKGMICGWAPQVEVLAHKAIGGFVSHCGWNSILESMWFGVPI 373
Query: 286 LCWPYFVDQYQNRNYICDAWKVGSQFFPD---ENGIITRQEIYNRVKALLNDDGIKANAL 342
L WP + +Q N + W VG D + ++ +EI +K L++ D I +
Sbjct: 374 LTWPIYAEQQLNAFRLVKEWGVGLGLRVDYRKGSDVVAAEEIEKGLKDLMDKDSIVHKKV 433
Query: 343 K-MKEMARKSLGEGGSSFRNFESFISQLKA 371
+ MKEM+R ++ +GGSS + I +
Sbjct: 434 QEMKEMSRNAVVDGGSSLISVGKLIDDITG 463
>pdb|2ACW|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed
With Udp-Glucose
pdb|2ACW|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed
With Udp-Glucose
Length = 465
Score = 112 bits (281), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 78/270 (28%), Positives = 126/270 (46%), Gaps = 22/270 (8%)
Query: 117 ATSAVAQSLKISNWILCNSFYELDSPACDL-------VPNILTIGPLLGSDHSEHSAINF 169
A +A+ + + I+ N+F +L+ + D +P I +GPLL + ++
Sbjct: 201 AYYKLAERFRDTKGIIVNTFSDLEQSSIDALYDHDEKIPPIYAVGPLLDLKGQPNPKLDQ 260
Query: 170 WPEDSTCLSWLDKQAIGSVIYVAFGSXXXXXXXXXXXXXXXXXXXHQ-PFLWVVRPDFMN 228
D L WLD+Q SV+++ FGS FLW N
Sbjct: 261 AQHD-LILKWLDEQPDKSVVFLCFGSMGVSFGPSQIREIALGLKHSGVRFLW------SN 313
Query: 229 RSHAKL-PDGFVE--RVSDRGKFVEWAPQEKVLGHPSVACFLSHCGWNSSIEGLSMGVPF 285
+ K+ P+GF+E + +G WAPQ +VL H ++ F+SHCGWNS +E + GVP
Sbjct: 314 SAEKKVFPEGFLEWMELEGKGMICGWAPQVEVLAHKAIGGFVSHCGWNSILESMWFGVPI 373
Query: 286 LCWPYFVDQYQNRNYICDAWKVGSQFFPD---ENGIITRQEIYNRVKALLNDDGIKANAL 342
L WP + +Q N + W VG D + ++ +EI +K L++ D I +
Sbjct: 374 LTWPIYAEQQLNAFRLVKEWGVGLGLRVDYRKGSDVVAAEEIEKGLKDLMDKDSIVHKKV 433
Query: 343 K-MKEMARKSLGEGGSSFRNFESFISQLKA 371
+ MKEM+R ++ +GGSS + I +
Sbjct: 434 QEMKEMSRNAVVDGGSSLISVGKLIDDITG 463
>pdb|2O6L|A Chain A, Crystal Structure Of The Udp-Glucuronic Acid Binding
Domain Of The Human Drug Metabolizing
Udp-Glucuronosyltransferase 2b7
pdb|2O6L|B Chain B, Crystal Structure Of The Udp-Glucuronic Acid Binding
Domain Of The Human Drug Metabolizing
Udp-Glucuronosyltransferase 2b7
Length = 170
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 47/101 (46%), Gaps = 4/101 (3%)
Query: 247 KFVEWAPQEKVLGHPSVACFLSHCGWNSSIEGLSMGVPFLCWPYFVDQYQNRNYICDAWK 306
+ +W PQ +LGHP F++H G N E + G+P + P F DQ N I
Sbjct: 71 RLYKWIPQNDLLGHPKTRAFITHGGANGIYEAIYHGIPXVGIPLFADQPDN---IAHXKA 127
Query: 307 VGSQFFPDENGIITRQEIYNRVKALLNDDGIKANALKMKEM 347
G+ D N + ++ N +K ++ND K N K+ +
Sbjct: 128 RGAAVRVDFN-TXSSTDLLNALKRVINDPSYKENVXKLSRI 167
>pdb|2IYA|A Chain A, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
pdb|2IYA|B Chain B, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
Length = 424
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 46/97 (47%), Gaps = 6/97 (6%)
Query: 250 EWAPQEKVLGHPSVACFLSHCGWNSSIEGLSMGVPFLCWPYFVDQYQNRNYICDAWKVGS 309
+W PQ +L S F++H G S++E LS VP + P +Q N I + +G
Sbjct: 311 QWVPQLDILTKAS--AFITHAGMGSTMEALSNAVPMVAVPQIAEQTMNAERIVE-LGLGR 367
Query: 310 QFFPDENGIITRQEIYNRVKALLNDDGIKANALKMKE 346
D+ +T +++ V A+ +D G+ +++
Sbjct: 368 HIPRDQ---VTAEKLREAVLAVASDPGVAERLAAVRQ 401
>pdb|2IYF|A Chain A, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
pdb|2IYF|B Chain B, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
Length = 430
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 49/108 (45%), Gaps = 9/108 (8%)
Query: 250 EWAPQEKVLGHPSVACFLSHCGWNSSIEGLSMGVPFLCWPYFVDQYQNRNYICDAWKVGS 309
+W PQ +L + F++H G S EGL+ P + P VDQ+ N + + V
Sbjct: 289 DWVPQLAILRQADL--FVTHAGAGGSQEGLATATPMIAVPQAVDQFGNAD-MLQGLGVAR 345
Query: 310 QFFPDENGIITRQEIYNRVKALLNDDGIKANALKMKEMARKSLGEGGS 357
+ +E T + AL++D + A +++ + + EGG+
Sbjct: 346 KLATEE---ATADLLRETALALVDDPEV---ARRLRRIQAEMAQEGGT 387
>pdb|3TSA|A Chain A, Spinosyn Rhamnosyltransferase Spng
pdb|3TSA|B Chain B, Spinosyn Rhamnosyltransferase Spng
Length = 391
Score = 36.2 bits (82), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 38/85 (44%), Gaps = 6/85 (7%)
Query: 265 CFLSHC--GWNSSIEGLSMGVPFLCWPYFVDQYQNRNYICDAWKVGSQF-FPDENGIITR 321
C L C G ++ +G+P L P + DQ+ +Y + G+ PDE
Sbjct: 287 CELVICAGGSGTAFTATRLGIPQLVLPQYFDQF---DYARNLAAAGAGICLPDEQAQSDH 343
Query: 322 QEIYNRVKALLNDDGIKANALKMKE 346
++ + + +L D G A A+K+ +
Sbjct: 344 EQFTDSIATVLGDTGFAAAAIKLSD 368
>pdb|3UYK|A Chain A, Spinosyn Rhamnosyltransferase Spng Complexed With Spinosyn
Aglycone
pdb|3UYK|B Chain B, Spinosyn Rhamnosyltransferase Spng Complexed With Spinosyn
Aglycone
pdb|3UYL|A Chain A, Spinosyn Rhamnosyltransferase Spng Complexed With
Thymidine Diphosphate
pdb|3UYL|B Chain B, Spinosyn Rhamnosyltransferase Spng Complexed With
Thymidine Diphosphate
Length = 387
Score = 36.2 bits (82), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 38/85 (44%), Gaps = 6/85 (7%)
Query: 265 CFLSHC--GWNSSIEGLSMGVPFLCWPYFVDQYQNRNYICDAWKVGSQF-FPDENGIITR 321
C L C G ++ +G+P L P + DQ+ +Y + G+ PDE
Sbjct: 287 CELVICAGGSGTAFTATRLGIPQLVLPQYFDQF---DYARNLAAAGAGICLPDEQAQSDH 343
Query: 322 QEIYNRVKALLNDDGIKANALKMKE 346
++ + + +L D G A A+K+ +
Sbjct: 344 EQFTDSIATVLGDTGFAAAAIKLSD 368
>pdb|3IA7|A Chain A, Crystal Structure Of Calg4, The Calicheamicin
Glycosyltransferase
pdb|3IA7|B Chain B, Crystal Structure Of Calg4, The Calicheamicin
Glycosyltransferase
Length = 402
Score = 33.9 bits (76), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 36/81 (44%), Gaps = 2/81 (2%)
Query: 250 EWAPQEKVLGHPSVACFLSHCGWNSSIEGLSMGVPFLCWPYFVDQYQNRNYICDAWKVGS 309
+W P VL H + AC L+H + +E + GVP + P+F + +GS
Sbjct: 287 QWIPFHSVLAH-ARAC-LTHGTTGAVLEAFAAGVPLVLVPHFATEAAPSAERVIELGLGS 344
Query: 310 QFFPDENGIITRQEIYNRVKA 330
PD+ + +E R+ A
Sbjct: 345 VLRPDQLEPASIREAVERLAA 365
>pdb|3OTG|A Chain A, Crystal Structure Of Calg1, Calicheamicin
Glycostyltransferase, Tdp Bound Form
pdb|3OTH|A Chain A, Crystal Structure Of Calg1, Calicheamicin
Glycostyltransferase, Tdp And Calicheamicin Alpha3i
Bound Form
pdb|3OTH|B Chain B, Crystal Structure Of Calg1, Calicheamicin
Glycostyltransferase, Tdp And Calicheamicin Alpha3i
Bound Form
Length = 412
Score = 32.3 bits (72), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 39/94 (41%), Gaps = 6/94 (6%)
Query: 247 KFVEWAPQEKVLGHPSVACFLSHCGWNSSIEGLSMGVPFLCWPYFVDQYQNRNYICDAWK 306
+ W PQ +L P V + H G +++ L GVP L +P+ D + N + A
Sbjct: 295 RLESWVPQAALL--PHVDLVVHHGGSGTTLGALGAGVPQLSFPWAGDSFANAQAVAQAGA 352
Query: 307 VGSQFFPDENGIITRQEIYNRVKALLNDDGIKAN 340
PD I+ + K LL ++ +A
Sbjct: 353 G-DHLLPDN---ISPDSVSGAAKRLLAEESYRAG 382
>pdb|2P6P|A Chain A, X-Ray Crystal Structure Of C-C Bond-Forming
Dtdp-D-Olivose-Transferase Urdgt2
pdb|2P6P|B Chain B, X-Ray Crystal Structure Of C-C Bond-Forming
Dtdp-D-Olivose-Transferase Urdgt2
Length = 384
Score = 29.3 bits (64), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Query: 249 VEWAPQEKVLGHPSVACFLSHCGWNSSIEGLSMGVPFLCWP 289
V W P + V P+ + H G S++ GLS GVP L P
Sbjct: 268 VGWTPLDVV--APTCDLLVHHAGGVSTLTGLSAGVPQLLIP 306
>pdb|2GRV|A Chain A, Crystal Structure Of Lpqw
pdb|2GRV|B Chain B, Crystal Structure Of Lpqw
pdb|2GRV|C Chain C, Crystal Structure Of Lpqw
Length = 621
Score = 27.7 bits (60), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 45/97 (46%), Gaps = 20/97 (20%)
Query: 48 RAAVVTFAPAY----------LP--LVLHIPKLVDAGI---LDSTGNATSDELILLSEDT 92
+ AVVTF+ Y LP +V IP AG+ + TG E I D
Sbjct: 172 KQAVVTFSQPYPAWRELFNDILPAHIVKDIPGGFGAGLARAMPVTGGQFRVETIDPQRDE 231
Query: 93 LPWKKNEYIWSFPSQPDVQKLYFE---ATSAVAQSLK 126
+ +N+ WS P++PD+ + F A +A+A S++
Sbjct: 232 ILLARNDRFWSVPAKPDL--VLFRRGGAPAALADSIR 266
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.136 0.435
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,143,447
Number of Sequences: 62578
Number of extensions: 452657
Number of successful extensions: 889
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 866
Number of HSP's gapped (non-prelim): 15
length of query: 374
length of database: 14,973,337
effective HSP length: 100
effective length of query: 274
effective length of database: 8,715,537
effective search space: 2388057138
effective search space used: 2388057138
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)