BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017267
(374 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|A8K979|ERI2_HUMAN ERI1 exoribonuclease 2 OS=Homo sapiens GN=ERI2 PE=2 SV=2
Length = 691
Score = 155 bits (393), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 88/215 (40%), Positives = 127/215 (59%), Gaps = 17/215 (7%)
Query: 89 SQKPQEFQYFVVIDFEATCDKD-KNPYPQEIIEFPSVIVSSVTGQLEACFQTYVRPTCNQ 147
S+ Q F Y +VIDFE+TC D K+ + QEIIEFP+V++++ TGQ+++ FQ YV+P +
Sbjct: 28 SKSKQLFDYLIVIDFESTCWNDGKHHHSQEIIEFPAVLLNTSTGQIDSEFQAYVQPQEHP 87
Query: 148 LLSDFCKDLTGIQQIQVDRGVTLSEALLRHDKWLEN-KGIKNTNFAV------------- 193
+LS+FC +LTGI+Q QVD GV L L + KW+ + KN FA
Sbjct: 88 ILSEFCMELTGIKQAQVDEGVPLKICLSQFCKWIHKIQQQKNIIFATGISEPSASEVKLC 147
Query: 194 --VTWSNWDCRVMLESECRFKKIWKPPYFNRWINLKVPFHEVFGGVRCNLKEAVEMAGLA 251
VTWS+WD V LE EC+ K++ KP + N WI+L+ + + L A++ G+
Sbjct: 148 AFVTWSDWDLGVCLEYECKRKQLLKPVFLNSWIDLRATYKLFYRRKPKGLSGALQEVGIE 207
Query: 252 WQGRAHCGLDDAKNTARLLALLMHRGFKFSITNSL 286
+ GR H GLDD++NTA L ++ G IT SL
Sbjct: 208 FSGREHSGLDDSRNTALLAWKMIRDGCVMKITRSL 242
Score = 35.0 bits (79), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
Query: 326 PSCFCGVKSSKGMVRKPGPKQGSVFFGC--GNWTVTRGARCHFFEWAFT 372
P C CG +S + +V GP G VF+ C G + R C +F+W T
Sbjct: 595 PLCKCGRRSKRLVVSNNGPNHGKVFYCCPIGKYQENRKC-CGYFKWEQT 642
>sp|Q5HZL1|ERI2_XENLA ERI1 exoribonuclease 2 OS=Xenopus laevis GN=eri2 PE=2 SV=1
Length = 687
Score = 154 bits (390), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 85/210 (40%), Positives = 123/210 (58%), Gaps = 16/210 (7%)
Query: 93 QEFQYFVVIDFEATCDKDKNPYPQEIIEFPSVIVSSVTGQLEACFQTYVRPTCNQLLSDF 152
Q F+Y ++IDFE+TC KD QEIIEFP+V+++ G++E+ F TYV+P + +LSDF
Sbjct: 33 QFFEYLIIIDFESTCWKDGKHSTQEIIEFPAVLLNVSNGEIESEFHTYVQPQEHPILSDF 92
Query: 153 CKDLTGIQQIQVDRGVTLSEALLRHDKWLEN----KGI------------KNTNFAVVTW 196
C +LTGI Q QVD GV L L + + W++ KGI ++ A VTW
Sbjct: 93 CTELTGINQQQVDDGVPLKICLSQFNSWIQKLQKEKGIAFVTAVPTHSTAEHKMCAFVTW 152
Query: 197 SNWDCRVMLESECRFKKIWKPPYFNRWINLKVPFHEVFGGVRCNLKEAVEMAGLAWQGRA 256
S+WD V L ECR K++ KP N WI+L+ + + L A++ G+ + GR
Sbjct: 153 SDWDLGVCLLYECRRKQMKKPDILNSWIDLRATYKLFYNRRPKGLNGALQDLGIEFSGRE 212
Query: 257 HCGLDDAKNTARLLALLMHRGFKFSITNSL 286
H GLDD++NTA+L + ++ G IT SL
Sbjct: 213 HSGLDDSRNTAKLASRMICDGCVMKITKSL 242
Score = 33.9 bits (76), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 6/51 (11%)
Query: 326 PSCFCGVKSSKGMVRKPGPKQGSVFFGCG----NWTVTRGARCHFFEWAFT 372
P C CG ++ + V GP QG F+ C N +G C +F+W T
Sbjct: 593 PMCNCGRRAKRLTVSNAGPNQGKAFYTCSVKKRNEENKKG--CDYFKWEQT 641
>sp|Q5BKS4|ERI2_MOUSE ERI1 exoribonuclease 2 OS=Mus musculus GN=Eri2 PE=2 SV=1
Length = 688
Score = 150 bits (378), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 83/211 (39%), Positives = 123/211 (58%), Gaps = 17/211 (8%)
Query: 93 QEFQYFVVIDFEATCDKD-KNPYPQEIIEFPSVIVSSVTGQLEACFQTYVRPTCNQLLSD 151
Q + Y +V+DFE+TC D K+ EIIEFP+V++++ TG++E+ F YV+P + +LS+
Sbjct: 32 QLYAYLIVVDFESTCWNDGKHHSSPEIIEFPAVLLNTATGEIESEFHAYVQPQEHPILSE 91
Query: 152 FCKDLTGIQQIQVDRGVTLSEALLRHDKWLENKGIKNT-NFAV---------------VT 195
FC +LTGI+Q+QVD GV L L + KW+ + T +FA VT
Sbjct: 92 FCTELTGIKQVQVDEGVPLKICLSQFCKWIHKLQQQQTISFAAGDSEPSTSEVKLCAFVT 151
Query: 196 WSNWDCRVMLESECRFKKIWKPPYFNRWINLKVPFHEVFGGVRCNLKEAVEMAGLAWQGR 255
WS+WD V LE ECR K++ KP + N WI+L+ + + L A++ G+ + GR
Sbjct: 152 WSDWDLGVCLEYECRRKQLLKPVFLNSWIDLRATYRLFYKRKPKGLSGALQEVGIEFSGR 211
Query: 256 AHCGLDDAKNTARLLALLMHRGFKFSITNSL 286
H GLDD++NTA L ++ G IT SL
Sbjct: 212 EHSGLDDSRNTALLAWKMIRDGCLMKITRSL 242
Score = 32.7 bits (73), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
Query: 326 PSCFCGVKSSKGMVRKPGPKQGSVFFGC--GNWTVTRGARCHFFEWAFT 372
P C CG +S + +V GP G F+ C G + R C +F+W T
Sbjct: 592 PLCKCGRRSKRLIVSNNGPNHGKAFYCCPVGKYQQDRKC-CGYFKWEQT 639
>sp|A6QLH5|ERI3_BOVIN ERI1 exoribonuclease 3 OS=Bos taurus GN=ERI3 PE=2 SV=1
Length = 337
Score = 145 bits (365), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 86/214 (40%), Positives = 125/214 (58%), Gaps = 11/214 (5%)
Query: 77 HDFGSWSTFYPDSQKPQEFQYFVVIDFEATCDKDKNPYPQEIIEFPSVIVSSVTGQLEAC 136
H FG+ S S PQ + YF+V+DFEATCDK + +PQEIIEFP + ++ T ++E+
Sbjct: 126 HSFGA-SMAAMMSFPPQRYHYFLVLDFEATCDKPQI-HPQEIIEFPILKLNGRTMEIEST 183
Query: 137 FQTYVRPTCNQLLSDFCKDLTGIQQIQVDRGVTLSEALLRHDKWLENKGIKNTNFA--VV 194
F YV+P + L+ FC +LTGI Q VD +L + L R D+W+ +G+ + N V
Sbjct: 184 FHMYVQPVVHPQLTPFCTELTGIIQAMVDGQPSLQQVLERVDEWMAKEGLLDPNVKSIFV 243
Query: 195 TWSNWDCRVMLESECRFKKIWKPPYFNRWINLKVPFHEVFGGVRCNLKEA-VEM-AGLAW 252
T +WD +VML +C++ + YF +WINLK + G C K ++M GL+
Sbjct: 244 TCGDWDLKVMLPGQCQYLGLPVADYFKQWINLKKAYSFAMG---CWPKNGLLDMNKGLSL 300
Query: 253 Q--GRAHCGLDDAKNTARLLALLMHRGFKFSITN 284
Q GR H G+DD KN A ++ L +RGF F T+
Sbjct: 301 QHIGRPHSGIDDCKNIANIMKTLAYRGFIFKQTS 334
>sp|O43414|ERI3_HUMAN ERI1 exoribonuclease 3 OS=Homo sapiens GN=ERI3 PE=1 SV=2
Length = 337
Score = 145 bits (365), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 86/214 (40%), Positives = 125/214 (58%), Gaps = 11/214 (5%)
Query: 77 HDFGSWSTFYPDSQKPQEFQYFVVIDFEATCDKDKNPYPQEIIEFPSVIVSSVTGQLEAC 136
H FG+ S S PQ + YF+V+DFEATCDK + +PQEIIEFP + ++ T ++E+
Sbjct: 126 HGFGA-SMAAMVSFPPQRYHYFLVLDFEATCDKPQI-HPQEIIEFPILKLNGRTMEIEST 183
Query: 137 FQTYVRPTCNQLLSDFCKDLTGIQQIQVDRGVTLSEALLRHDKWLENKGIKNTNFA--VV 194
F YV+P + L+ FC +LTGI Q VD +L + L R D+W+ +G+ + N V
Sbjct: 184 FHMYVQPVVHPQLTPFCTELTGIIQAMVDGQPSLQQVLERVDEWMAKEGLLDPNVKSIFV 243
Query: 195 TWSNWDCRVMLESECRFKKIWKPPYFNRWINLKVPFHEVFGGVRCNLKEA-VEM-AGLAW 252
T +WD +VML +C++ + YF +WINLK + G C K ++M GL+
Sbjct: 244 TCGDWDLKVMLPGQCQYLGLPVADYFKQWINLKKAYSFAMG---CWPKNGLLDMNKGLSL 300
Query: 253 Q--GRAHCGLDDAKNTARLLALLMHRGFKFSITN 284
Q GR H G+DD KN A ++ L +RGF F T+
Sbjct: 301 QHIGRPHSGIDDCKNIANIMKTLAYRGFIFKQTS 334
>sp|Q8C460|ERI3_MOUSE ERI1 exoribonuclease 3 OS=Mus musculus GN=Eri3 PE=1 SV=1
Length = 337
Score = 143 bits (361), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 81/199 (40%), Positives = 118/199 (59%), Gaps = 10/199 (5%)
Query: 92 PQEFQYFVVIDFEATCDKDKNPYPQEIIEFPSVIVSSVTGQLEACFQTYVRPTCNQLLSD 151
PQ + YF+V+DFEATCDK + +PQEIIEFP + ++ T ++E+ F YV+P + L+
Sbjct: 140 PQRYHYFLVLDFEATCDKPQI-HPQEIIEFPILKLNGRTMEIESTFHMYVQPVVHPQLTP 198
Query: 152 FCKDLTGIQQIQVDRGVTLSEALLRHDKWLENKGIKNTNFA--VVTWSNWDCRVMLESEC 209
FC +LTGI Q VD +L + L R D+W+ +G+ + N VT +WD +VML +C
Sbjct: 199 FCTELTGIIQAMVDGQPSLQQVLERVDEWMAKEGLLDPNVKSIFVTCGDWDLKVMLPGQC 258
Query: 210 RFKKIWKPPYFNRWINLKVPFHEVFGGVRCNLKEA-VEM-AGLAWQ--GRAHCGLDDAKN 265
+ + YF +WINLK + G C K ++M GL+ Q GR H G+DD KN
Sbjct: 259 HYLGLPVADYFKQWINLKKAYSFAMG---CWPKNGLLDMNKGLSLQHIGRPHSGIDDCKN 315
Query: 266 TARLLALLMHRGFKFSITN 284
A ++ L +RGF F T+
Sbjct: 316 IANIMKTLAYRGFIFKQTS 334
>sp|Q8IV48|ERI1_HUMAN 3'-5' exoribonuclease 1 OS=Homo sapiens GN=ERI1 PE=1 SV=3
Length = 349
Score = 142 bits (357), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 71/196 (36%), Positives = 111/196 (56%), Gaps = 4/196 (2%)
Query: 95 FQYFVVIDFEATCDKDKNP-YPQEIIEFPSVIVSSVTGQLEACFQTYVRPTCNQLLSDFC 153
+ Y +IDFEATC++ P + EIIEFP V++++ T ++E FQ YVRP N LSDFC
Sbjct: 127 YDYICIIDFEATCEEGNPPEFVHEIIEFPVVLLNTHTLEIEDTFQQYVRPEINTQLSDFC 186
Query: 154 KDLTGIQQIQVDRGVTLSEALLRHDKWLENKGIKNT-NFAVVTWSNWDCRVMLESECRFK 212
LTGI Q QVDR T + L + W++ K + ++++T +WD L +C+
Sbjct: 187 ISLTGITQDQVDRADTFPQVLKKVIDWMKLKELGTKYKYSLLTDGSWDMSKFLNIQCQLS 246
Query: 213 KIWKPPYFNRWINLKVPFHEVFGGVRCNLKEAV--EMAGLAWQGRAHCGLDDAKNTARLL 270
++ PP+ +WIN++ + + R K + E G+ + GR HCGLDD+KN AR+
Sbjct: 247 RLKYPPFAKKWINIRKSYGNFYKVPRSQTKLTIMLEKLGMDYDGRPHCGLDDSKNIARIA 306
Query: 271 ALLMHRGFKFSITNSL 286
++ G + I +
Sbjct: 307 VRMLQDGCELRINEKM 322
>sp|Q502M8|ERI2_DANRE ERI1 exoribonuclease 2 OS=Danio rerio GN=eri2 PE=2 SV=1
Length = 555
Score = 138 bits (347), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 78/207 (37%), Positives = 114/207 (55%), Gaps = 15/207 (7%)
Query: 93 QEFQYFVVIDFEATCDKDKNPYPQEIIEFPSVIVSSVTGQLEACFQTYVRPTCNQLLSDF 152
Q F + ++IDFE+TC ++K+ QEIIEFP+V++S +G +E+ F +YV+P +LS F
Sbjct: 30 QRFSFLIIIDFESTCWREKSSSGQEIIEFPAVLLSVCSGAVESEFHSYVQPQERPVLSAF 89
Query: 153 CKDLTGIQQIQVDRGVTLSEALLRHDKWL----ENKGI-----------KNTNFAVVTWS 197
C +LTGI Q QVD L L R +WL E +G+ A VTWS
Sbjct: 90 CTELTGITQDQVDSAPPLHVVLSRFSRWLRSLQEERGVVFLTDSSGAAPSAQLCAFVTWS 149
Query: 198 NWDCRVMLESECRFKKIWKPPYFNRWINLKVPFHEVFGGVRCNLKEAVEMAGLAWQGRAH 257
+WD V L EC+ K++ P WI+L+ + + L+ A+ G+ + GR H
Sbjct: 150 DWDLGVCLLYECKRKQLSVPEALKNWIDLRATYKLFYNRKPKGLRGALLDLGIEFTGREH 209
Query: 258 CGLDDAKNTARLLALLMHRGFKFSITN 284
GL DA+NTA L +M G + SIT+
Sbjct: 210 SGLVDARNTALLAQRMMTDGCQLSITS 236
Score = 34.7 bits (78), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Query: 317 LQNSIFQYHPSCFCGVKSSKGMVRKPGPKQGSVFFGCG-NWTVTRGARCHFFEW 369
L+ + P C CG ++ + V GP G VF+ C + T C FF+W
Sbjct: 477 LKQKVKVTSPLCVCGRRARRLTVGNGGPNHGRVFYCCPRRRSNTHTHTCDFFQW 530
>sp|Q7TMF2|ERI1_MOUSE 3'-5' exoribonuclease 1 OS=Mus musculus GN=Eri1 PE=1 SV=2
Length = 345
Score = 135 bits (339), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 69/198 (34%), Positives = 111/198 (56%), Gaps = 6/198 (3%)
Query: 95 FQYFVVIDFEATCDKDKNP--YPQEIIEFPSVIVSSVTGQLEACFQTYVRPTCNQLLSDF 152
+ Y +IDFEATC+ + NP + EIIEFP V++++ T ++E FQ YVRP N LS+F
Sbjct: 123 YDYICIIDFEATCE-EGNPAEFLHEIIEFPVVLLNTHTLEIEDTFQQYVRPEVNAQLSEF 181
Query: 153 CKDLTGIQQIQVDRGVTLSEALLRHDKWLENKGIKNT-NFAVVTWSNWDCRVMLESECRF 211
C LTGI Q QVDR + L + +W+++K + + ++T +WD L +CR
Sbjct: 182 CIGLTGITQDQVDRADAFPQVLKKVIEWMKSKELGTKYKYCILTDGSWDMSKFLSIQCRL 241
Query: 212 KKIWKPPYFNRWINLKVPFHEVFGGVRCNLKEAV--EMAGLAWQGRAHCGLDDAKNTARL 269
++ P + +WIN++ + + R K + E G+ + GR H GLDD+KN AR+
Sbjct: 242 SRLKHPAFAKKWINIRKSYGNFYKVPRSQTKLTIMLEKLGMDYDGRPHSGLDDSKNIARI 301
Query: 270 LALLMHRGFKFSITNSLM 287
++ G + I ++
Sbjct: 302 AVRMLQDGCELRINEKIL 319
>sp|Q5FVR4|ERI1_RAT 3'-5' exoribonuclease 1 OS=Rattus norvegicus GN=Eri1 PE=2 SV=1
Length = 345
Score = 131 bits (329), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 68/197 (34%), Positives = 110/197 (55%), Gaps = 6/197 (3%)
Query: 95 FQYFVVIDFEATCDKDKNP--YPQEIIEFPSVIVSSVTGQLEACFQTYVRPTCNQLLSDF 152
+ Y +IDFEATC+ + NP + EIIEFP V++++ + ++E FQ YVRP N LS+F
Sbjct: 123 YDYICIIDFEATCE-EGNPAEFLHEIIEFPVVLLNTHSLEIEDTFQQYVRPEVNSQLSEF 181
Query: 153 CKDLTGIQQIQVDRGVTLSEALLRHDKWLENKGIKNT-NFAVVTWSNWDCRVMLESECRF 211
C LTGI Q QVDR + L + +W+++K + + ++T +WD L +C+
Sbjct: 182 CIGLTGITQDQVDRADAFPQVLKKVIEWMKSKELGTKYKYCILTDGSWDMSKFLNIQCQL 241
Query: 212 KKIWKPPYFNRWINLKVPFHEVFGGVRCNLKEAV--EMAGLAWQGRAHCGLDDAKNTARL 269
++ P + +WIN++ + + R K + E G+ + GR H GLDD+KN AR+
Sbjct: 242 SRLKYPSFAKKWINIRKSYGNFYKVPRSQTKLTIMLEKLGMDYDGRPHSGLDDSKNIARI 301
Query: 270 LALLMHRGFKFSITNSL 286
++ G + I L
Sbjct: 302 AVRMLQDGCELRINEKL 318
>sp|O44406|ERI1_CAEEL 3'-5' exonuclease eri-1 OS=Caenorhabditis elegans GN=eri-1 PE=1
SV=2
Length = 582
Score = 118 bits (296), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 72/207 (34%), Positives = 101/207 (48%), Gaps = 7/207 (3%)
Query: 95 FQYFVVIDFEATCDKDKNPYPQEIIEFPSVIVSSVTGQLEACFQTYVRPTCNQLLSDFCK 154
F Y + IDFE TC + YP EIIE P+V++ ++ + F+TYVRP N LS+FC
Sbjct: 148 FDYLIAIDFECTCVEIIYDYPHEIIELPAVLIDVREMKIISEFRTYVRPVRNPKLSEFCM 207
Query: 155 DLTGIQQIQVDRGVTLSEALLRHDKWLE--NKGIKNTNFAVVTWSNWDCRVMLESECRFK 212
T I Q VD EAL R W+ N G KN+ FA VT D ++ +C
Sbjct: 208 QFTKIAQETVDAAPYFREALQRLYTWMRKFNLGQKNSRFAFVTDGPHDMWKFMQFQCLLS 267
Query: 213 KIWKPPYFNRWINLKVPFHEVFGGV-----RCNLKEAVEMAGLAWQGRAHCGLDDAKNTA 267
I P F +IN+K F E F G+ + ++ +E L++ G H GLDDA N A
Sbjct: 268 NIRMPHMFRSFINIKKTFKEKFNGLIKGNGKSGIENMLERLDLSFVGNKHSGLDDATNIA 327
Query: 268 RLLALLMHRGFKFSITNSLMWQTNDGS 294
+ +M + I ++ N S
Sbjct: 328 AIAIQMMKLKIELRINQKCSYKENQRS 354
>sp|Q8W566|Y3514_ARATH Uncharacterized exonuclease domain-containing protein At3g15140
OS=Arabidopsis thaliana GN=At3g15140 PE=2 SV=1
Length = 337
Score = 93.2 bits (230), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 58/208 (27%), Positives = 94/208 (45%), Gaps = 21/208 (10%)
Query: 88 DSQKPQEFQYFVVIDFEATCDKDKNPYPQEIIEFPSVIVSSVTGQLEACFQTYVRPT--C 145
+ +K QEF +F+VID E EI+EFP +IV + T ++ F +VRPT
Sbjct: 119 ERKKSQEFNFFLVIDLEGKV---------EILEFPILIVDAKTMEVVDLFHRFVRPTKMS 169
Query: 146 NQLLSDFCKDL---TGIQQIQVDRGVTLSEA-------LLRHDKWLENKGIKNTNFAVVT 195
Q ++ + + G+ ++ D + + L HD W ++ + A VT
Sbjct: 170 EQAINKYIEGKYGELGVDRVWHDTAIPFKQVVEEFEVWLAEHDLWDKDTDWGLNDAAFVT 229
Query: 196 WSNWDCRVMLESECRFKKIWKPPYFNRWINLKVPFHEVFGGVRCNLKEAVEMAGLAWQGR 255
NWD + + +C I PPYF WINLK + +G + + G+ G
Sbjct: 230 CGNWDIKTKIPEQCVVSNINLPPYFMEWINLKDVYLNFYGREARGMVSMMRQCGIKLMGS 289
Query: 256 AHCGLDDAKNTARLLALLMHRGFKFSIT 283
H G+DD KN R++ ++ G +T
Sbjct: 290 HHLGIDDTKNITRVVQRMLSEGAVLKLT 317
>sp|Q08I43|ERI1_SCHPO 3'-5' exonuclease eri1 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=eri1 PE=1 SV=1
Length = 313
Score = 89.4 bits (220), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 61/230 (26%), Positives = 107/230 (46%), Gaps = 23/230 (10%)
Query: 95 FQYFVVIDFEATCDKDKN-PYPQEIIEFPSVIVSSVTGQLEACFQTYVRPTCNQLLSDFC 153
+Y +++D EATC++ + EIIE P ++ + + F +YVRP+ N LSD+C
Sbjct: 79 LRYLLIVDVEATCEEGCGFSFENEIIELPCLLFDLIEKSIIDEFHSYVRPSMNPTLSDYC 138
Query: 154 KDLTGIQQIQVDRGVTLSEA-------LLRHDKWLEN-----------KGIKNT---NFA 192
K LTGIQQ VD+ S+ L +H L K + T N+A
Sbjct: 139 KSLTGIQQCTVDKAPIFSDVLEELFIFLRKHSNILVPSVDEIEIIEPLKSVPRTQPKNWA 198
Query: 193 VVTWSNWDCRVMLESECRFKKIWKPPYFN-RWINLKVPFHEVFGGVRCNLKEAVEMAGLA 251
WD L + ++ K+ P + +++++ + +V+ R N+ +E GL
Sbjct: 199 WACDGPWDMASFLAKQFKYDKMPIPDWIKGPFVDIRSFYKDVYRVPRTNINGMLEHWGLQ 258
Query: 252 WQGRAHCGLDDAKNTARLLALLMHRGFKFSITNSLMWQTNDGSLTWNQFP 301
++G H G+DDA+N +R++ + +F M +G + +P
Sbjct: 259 FEGSEHRGIDDARNLSRIVKKMCSENVEFECNRWWMEYEKNGWIPNRSYP 308
>sp|Q10905|CRN4_CAEEL Cell death-related nuclease 4 OS=Caenorhabditis elegans GN=crn-4
PE=1 SV=1
Length = 298
Score = 87.4 bits (215), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 56/201 (27%), Positives = 88/201 (43%), Gaps = 9/201 (4%)
Query: 95 FQYFVVIDFEATCDKDKNPYPQEIIEFPSVIVSSVTGQL--EACFQTYVRPTCNQLLSDF 152
F +++DFE T D YP E+I+F V ++ + F YV+P N+ L+
Sbjct: 8 FDTLLILDFETTSDAANQDYPCEVIQFAIVAYDVPNDKIREDISFNKYVKPVLNRTLTKN 67
Query: 153 CKDLTGIQQIQVDRGVTLSEALLRHDKWLENKGIKNTNFAVVTWSNWDCRVMLESECRFK 212
C D TGI Q +D T + +WL G++ FA V S D + + + +
Sbjct: 68 CVDFTGIPQRSIDTADTFDVVYEQFQQWLITLGLEEGKFAFVCDSRQDLWRIAQYQMKLS 127
Query: 213 KIWKPPYFNRWINLKVPFHEVFG-------GVRCNLKEAVEMAGLAWQGRAHCGLDDAKN 265
I P +F ++INL F N+ + E L GRAH +DD N
Sbjct: 128 NIQMPAFFRQYINLYKIFTNEMDRMGPKELSATTNIGKMNEYYDLPTIGRAHDAMDDCLN 187
Query: 266 TARLLALLMHRGFKFSITNSL 286
A +L +++ G K ++ L
Sbjct: 188 IATILQRMINMGAKVTVNELL 208
>sp|O05231|KAPD_BACSU Probable 3'-5' exonuclease KapD OS=Bacillus subtilis (strain 168)
GN=kapD PE=3 SV=1
Length = 205
Score = 67.0 bits (162), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 57/182 (31%), Positives = 84/182 (46%), Gaps = 17/182 (9%)
Query: 98 FVVIDFEATCDKDK----NPYPQEIIEFPSVIVSSVTGQLEACFQTYVRPTCNQLLSDFC 153
++IDFE T K N +P EIIE + IV S+ ++ F +YVRP L+ C
Sbjct: 6 LLIIDFEFTMPDGKYSPQNFFP-EIIE--AGIVKSIDDEVVETFSSYVRPKKFPKLTKRC 62
Query: 154 KDLTGIQQIQVDRGVTLSEALLRHDKWLENKGIKNTNFAVVTWSNWDCRVMLESECRFKK 213
K I Q QVD G+ + + + ++ K N ++TW N D +V L+ C F
Sbjct: 63 KSFLKITQKQVDEGMRFEDFIRKLNELDPEK-----NSTIITWGNMDMKV-LKQNCMFNH 116
Query: 214 IWKP-PYFNRWINLKVPFHEVFGG-VRCNLKEAVEMAGLAWQGRAHCGLDDAKNTARLLA 271
I P P+ +L + + FG L +A E G + G H LDDA +L
Sbjct: 117 I--PFPFKGEMRDLSLEYKNFFGDRTLTGLWKAAEEYGDSGTGTHHKALDDALTAYKLFK 174
Query: 272 LL 273
L+
Sbjct: 175 LV 176
>sp|A5IJJ8|DPO3_THEP1 DNA polymerase III PolC-type OS=Thermotoga petrophila (strain RKU-1
/ ATCC BAA-488 / DSM 13995) GN=polC PE=3 SV=1
Length = 1367
Score = 47.4 bits (111), Expect = 2e-04, Method: Composition-based stats.
Identities = 55/189 (29%), Positives = 83/189 (43%), Gaps = 23/189 (12%)
Query: 98 FVVIDFEATCDKDKNPYPQEIIEFPSVIVSSVTGQLEACFQTYVRPTCNQLLSDFCKDLT 157
FVV+DFE T +P EIIE +V + GQ+ + T ++P+ + +S ++T
Sbjct: 358 FVVLDFETT---GLDPQVDEIIEIGAVKIQD--GQIVDEYHTLIKPS--REISRRSSEIT 410
Query: 158 GIQQIQVDRGVTLSEALLRHDKWLENKGI--KNTNFAVVTWSNWDCRVM-LESECRFKKI 214
GI Q ++ ++ E L +LEN I N NF W +VM L+
Sbjct: 411 GITQEMLENKRSIEEVLPEFLGFLENSIIVAHNANFDYRFLRLWIKKVMGLD-------- 462
Query: 215 WKPPYFNRWINLKVPFHEVFGGVRCNLKEAVEMAGLAWQGRAHCGLDDAKNTARLLALLM 274
W+ PY + K + +L VE GL R H LDDA+ TA++ +
Sbjct: 463 WERPYIDTLALAK----SLLKMRSYSLDSVVEKLGLG-PFRHHRALDDARVTAQVFLRFV 517
Query: 275 HRGFKFSIT 283
K IT
Sbjct: 518 EMMKKIGIT 526
>sp|Q9ZHF6|DPO3_THEMA DNA polymerase III PolC-type OS=Thermotoga maritima (strain ATCC
43589 / MSB8 / DSM 3109 / JCM 10099) GN=polC PE=1 SV=1
Length = 1367
Score = 44.7 bits (104), Expect = 0.001, Method: Composition-based stats.
Identities = 54/189 (28%), Positives = 83/189 (43%), Gaps = 23/189 (12%)
Query: 98 FVVIDFEATCDKDKNPYPQEIIEFPSVIVSSVTGQLEACFQTYVRPTCNQLLSDFCKDLT 157
FVV+DFE T +P EIIE +V + GQ+ + T ++P+ + +S ++T
Sbjct: 358 FVVLDFETT---GLDPQVDEIIEIGAVKIQG--GQIVDEYHTLIKPS--REISRKSSEIT 410
Query: 158 GIQQIQVDRGVTLSEALLRHDKWLENKGI--KNTNFAVVTWSNWDCRVM-LESECRFKKI 214
GI Q ++ ++ E L +LE+ I N NF W +VM L+
Sbjct: 411 GITQEMLENKRSIEEVLPEFLGFLEDSIIVAHNANFDYRFLRLWIKKVMGLD-------- 462
Query: 215 WKPPYFNRWINLKVPFHEVFGGVRCNLKEAVEMAGLAWQGRAHCGLDDAKNTARLLALLM 274
W+ PY I+ + +L VE GL R H LDDA+ TA++ +
Sbjct: 463 WERPY----IDTLALAKSLLKLRSYSLDSVVEKLGLG-PFRHHRALDDARVTAQVFLRFV 517
Query: 275 HRGFKFSIT 283
K IT
Sbjct: 518 EMMKKIGIT 526
>sp|Q9BJZ5|FUSIL_DROME RNA-binding protein fusilli OS=Drosophila melanogaster GN=fus PE=2
SV=1
Length = 967
Score = 40.0 bits (92), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 31/64 (48%)
Query: 167 GVTLSEALLRHDKWLENKGIKNTNFAVVTWSNWDCRVMLESECRFKKIWKPPYFNRWINL 226
G LSEA+ D +L + + +T +VT R L E K + P Y+NR+ +L
Sbjct: 119 GKPLSEAIEEFDAYLRSLSLHDTEIKLVTDGQLPLRQCLHREASAKDVELPAYYNRFSDL 178
Query: 227 KVPF 230
+ F
Sbjct: 179 RKEF 182
>sp|Q9NG98|TOP3A_DROME DNA topoisomerase 3-alpha OS=Drosophila melanogaster GN=Top3alpha
PE=2 SV=2
Length = 1250
Score = 39.3 bits (90), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 23/43 (53%), Gaps = 4/43 (9%)
Query: 328 CFCGVKSSKGMVRKPGPKQGSVFFGCGNWTVTRGARCHFFEWA 370
C CG +S+ VRK GP QG F+ C TR C FF+W
Sbjct: 1152 CNCGQLASQLTVRKDGPNQGRPFYAC----PTREKSCGFFKWG 1190
>sp|Q6ZU11|YD002_HUMAN Uncharacterized protein FLJ44066 OS=Homo sapiens PE=2 SV=1
Length = 926
Score = 37.0 bits (84), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
Query: 326 PSCFCGVKSSKGMVRKPGPKQGSVFFGCGNWTVTRGARCHFFEW 369
PSC + MV+K GP +G +F+ C + RC FF+W
Sbjct: 169 PSCHHSQPAKLVMVKKEGPNKGRLFYTCDG---PKADRCKFFKW 209
>sp|P47729|DPO3_MYCPU DNA polymerase III PolC-type OS=Mycoplasma pulmonis (strain UAB
CTIP) GN=polC PE=3 SV=2
Length = 1435
Score = 36.6 bits (83), Expect = 0.32, Method: Composition-based stats.
Identities = 24/79 (30%), Positives = 40/79 (50%), Gaps = 7/79 (8%)
Query: 96 QYFVVIDFEATCDKDKNPYPQEIIEFPSVIVSSVTGQLEACFQTYVRPTCNQLLSDFCKD 155
Q +VV D E T +P E+I+F + ++ + G++ +++P L F
Sbjct: 402 QEYVVYDIETT---GLSPMLNELIQFGASVIKN--GRIIETHHFFIKPKSK--LDSFTTK 454
Query: 156 LTGIQQIQVDRGVTLSEAL 174
LTGI Q +++G L EAL
Sbjct: 455 LTGITQEHLEKGYELQEAL 473
>sp|Q8K203|NEIL3_MOUSE Endonuclease 8-like 3 OS=Mus musculus GN=Neil3 PE=1 SV=1
Length = 606
Score = 36.2 bits (82), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 22/33 (66%), Gaps = 3/33 (9%)
Query: 338 MVRKPGPKQGSVFFGCGNWTVTRGARCHFFEWA 370
+VRK G +G F+ C ++ RGA+C FFEWA
Sbjct: 519 VVRKDGENKGRQFYAC---SLPRGAQCGFFEWA 548
>sp|Q13472|TOP3A_HUMAN DNA topoisomerase 3-alpha OS=Homo sapiens GN=TOP3A PE=1 SV=1
Length = 1001
Score = 35.8 bits (81), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 6/44 (13%)
Query: 327 SCFCGVKSSKGMVRKPGPKQGSVFFGCGNWTVTRGARCHFFEWA 370
+C CG ++ VRK GP +G FF C G C+FF WA
Sbjct: 812 TCNCGQEAVLLTVRKEGPNRGRQFFKCN------GGSCNFFLWA 849
Score = 32.3 bits (72), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 20/43 (46%), Gaps = 3/43 (6%)
Query: 327 SCFCGVKSSKGMVRKPGPKQGSVFFGCGNWTVTRGARCHFFEW 369
SC C S V+K GP +G F C R +C FF+W
Sbjct: 896 SCLCSQPSVTRTVQKDGPNKGRQFHTCAK---PREQQCGFFQW 935
>sp|O70157|TOP3A_MOUSE DNA topoisomerase 3-alpha OS=Mus musculus GN=Top3a PE=1 SV=1
Length = 1003
Score = 35.4 bits (80), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 6/44 (13%)
Query: 327 SCFCGVKSSKGMVRKPGPKQGSVFFGCGNWTVTRGARCHFFEWA 370
+C CG ++ VRK GP QG F+ C N C+FF WA
Sbjct: 814 TCNCGREAVLLTVRKQGPNQGRHFYKCSN------GDCNFFLWA 851
Score = 32.0 bits (71), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 3/42 (7%)
Query: 328 CFCGVKSSKGMVRKPGPKQGSVFFGCGNWTVTRGARCHFFEW 369
C CG + V+K GP +G F C R +C FF+W
Sbjct: 899 CLCGQPAVTRTVQKDGPNKGRQFHTCAK---PREQQCGFFQW 937
>sp|C5JC96|VPS10_AJEDS Vacuolar protein sorting/targeting protein 10 OS=Ajellomyces
dermatitidis (strain SLH14081) GN=VPS10 PE=3 SV=1
Length = 1500
Score = 33.1 bits (74), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 33/77 (42%), Gaps = 14/77 (18%)
Query: 235 GGVRCNLKEAVEMAGLAWQGRAHCGLDDAKNTARLLALLMHRGFKFSITNSLMWQTNDGS 294
G + ++ + EM G AW H R A ++ +G K W TND +
Sbjct: 67 AGTKWDIVDVGEMKGQAWSLMPH-------PMDRTKAYVLGKGGKH-------WVTNDQA 112
Query: 295 LTWNQFPERIFLPPHQL 311
+TW +F L P+QL
Sbjct: 113 MTWREFTVDAELSPYQL 129
>sp|C5GVC6|VPS10_AJEDR Vacuolar protein sorting/targeting protein 10 OS=Ajellomyces
dermatitidis (strain ER-3 / ATCC MYA-2586) GN=VPS10 PE=3
SV=1
Length = 1500
Score = 33.1 bits (74), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 33/77 (42%), Gaps = 14/77 (18%)
Query: 235 GGVRCNLKEAVEMAGLAWQGRAHCGLDDAKNTARLLALLMHRGFKFSITNSLMWQTNDGS 294
G + ++ + EM G AW H R A ++ +G K W TND +
Sbjct: 67 AGTKWDIVDVGEMKGQAWSLMPH-------PMDRTKAYVLGKGGKH-------WVTNDQA 112
Query: 295 LTWNQFPERIFLPPHQL 311
+TW +F L P+QL
Sbjct: 113 MTWREFTVDAELSPYQL 129
>sp|O61660|TOP3_CAEEL DNA topoisomerase 3 OS=Caenorhabditis elegans GN=top-3 PE=2 SV=1
Length = 759
Score = 32.3 bits (72), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 328 CFCGVKSSKGMVRKPGPKQGSVFFGCGNWTVTRGARCHFFEWA 370
C +++ +V+K GP +G F+ C + T +C+FF+WA
Sbjct: 718 CPEPMRAVTKVVQKEGPNKGKKFYTC-SLPYTSSEKCNFFKWA 759
>sp|Q3MHN7|NEIL3_BOVIN Endonuclease 8-like 3 OS=Bos taurus GN=NEIL3 PE=2 SV=1
Length = 606
Score = 32.0 bits (71), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 3/33 (9%)
Query: 338 MVRKPGPKQGSVFFGCGNWTVTRGARCHFFEWA 370
+VRK G +G F+ C + R A+C FFEWA
Sbjct: 519 VVRKSGENKGRHFYAC---PLAREAQCGFFEWA 548
>sp|Q8TAT5|NEIL3_HUMAN Endonuclease 8-like 3 OS=Homo sapiens GN=NEIL3 PE=1 SV=3
Length = 605
Score = 32.0 bits (71), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
Query: 326 PSCFCGVKSSKGMVRKPGPKQGSVFFGCGNWTVTRGARCHFFEWA 370
P C G +S+ V K GP G FF C + + +C+FF+WA
Sbjct: 552 PFCNHGKRSTMKTVLKIGPNNGKNFFVC---PLGKEKQCNFFQWA 593
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.136 0.447
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 150,262,956
Number of Sequences: 539616
Number of extensions: 6306189
Number of successful extensions: 11601
Number of sequences better than 100.0: 30
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 11539
Number of HSP's gapped (non-prelim): 42
length of query: 374
length of database: 191,569,459
effective HSP length: 119
effective length of query: 255
effective length of database: 127,355,155
effective search space: 32475564525
effective search space used: 32475564525
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 62 (28.5 bits)