Query 017267
Match_columns 374
No_of_seqs 339 out of 1304
Neff 6.1
Searched_HMMs 29240
Date Mon Mar 25 11:41:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017267.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017267hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3cg7_A CRN-4, cell death-relat 100.0 7.3E-41 2.5E-45 326.3 24.7 196 93-288 16-220 (308)
2 1w0h_A 3'-5' exonuclease ERI1; 100.0 4.1E-39 1.4E-43 293.5 22.4 192 94-286 8-204 (204)
3 2xri_A ERI1 exoribonuclease 3; 100.0 3.3E-38 1.1E-42 293.5 23.4 188 93-284 28-221 (224)
4 1zbh_A 3'-5' exonuclease ERI1; 100.0 7.6E-38 2.6E-42 303.4 25.1 238 47-288 30-274 (299)
5 1zbu_A ERI-1 homolog, 3'-5' ex 100.0 6.2E-38 2.1E-42 310.6 22.4 248 38-289 68-325 (349)
6 2gui_A DNA polymerase III epsi 100.0 3.7E-34 1.3E-38 259.3 19.4 172 96-278 9-186 (194)
7 2p1j_A POLIII, DNA polymerase 100.0 4.8E-34 1.7E-38 257.9 19.4 168 96-280 12-179 (186)
8 3mxm_B Three prime repair exon 100.0 3.6E-33 1.2E-37 263.2 14.7 174 95-277 11-215 (242)
9 2f96_A Ribonuclease T; RNAse, 100.0 1.2E-31 4.2E-36 248.6 18.6 177 96-278 29-214 (224)
10 3u3y_B Three prime repair exon 100.0 3.8E-32 1.3E-36 265.3 14.4 174 95-277 11-215 (314)
11 1y97_A Three prime repair exon 100.0 6E-31 2.1E-35 245.4 18.2 176 94-279 8-212 (238)
12 3v9w_A Ribonuclease T; DEDD nu 100.0 1.4E-30 4.9E-35 242.8 18.3 180 96-281 37-225 (235)
13 2igi_A Oligoribonuclease; RNAs 100.0 1.1E-28 3.9E-33 220.7 12.4 165 96-278 5-178 (180)
14 1wlj_A Interferon stimulated g 100.0 1.6E-28 5.6E-33 222.3 10.6 157 96-278 5-170 (189)
15 2qxf_A Exodeoxyribonuclease I; 99.9 3.5E-27 1.2E-31 242.4 16.1 170 96-277 9-201 (482)
16 2gbz_A Oligoribonuclease; ORN, 99.9 1.7E-27 5.7E-32 216.7 12.2 164 96-278 9-182 (194)
17 3tr8_A Oligoribonuclease; tran 99.9 9.3E-27 3.2E-31 211.8 11.5 165 96-278 9-182 (186)
18 4hec_A Putative uncharacterize 98.9 5.8E-09 2E-13 94.8 11.9 154 96-275 22-180 (190)
19 2kfn_A Klenow fragment of DNA 98.8 6.8E-08 2.3E-12 101.7 15.8 146 97-279 27-195 (605)
20 4gmj_B CCR4-NOT transcription 98.7 5.3E-07 1.8E-11 86.7 18.0 171 97-278 35-246 (285)
21 1x9m_A DNA polymerase; DNA plo 98.5 4E-07 1.4E-11 97.4 11.3 141 98-280 1-186 (698)
22 2d5r_A CCR4-NOT transcription 98.5 8.6E-06 2.9E-10 77.0 19.1 174 96-279 24-237 (252)
23 1uoc_A POP2; hydrolase, DEDD n 98.4 1.2E-05 4E-10 77.4 17.8 173 96-277 38-265 (289)
24 2p51_A SPCC18.06C protein; DED 98.4 1.2E-05 4E-10 78.7 17.4 172 96-277 45-256 (333)
25 1qht_A Protein (DNA polymerase 98.2 2.9E-05 9.9E-10 83.9 17.1 152 96-274 135-327 (775)
26 3iay_A DNA polymerase delta ca 97.7 0.00069 2.4E-08 74.5 17.4 156 97-273 250-465 (919)
27 1noy_A Protein (DNA polymerase 97.7 0.001 3.4E-08 66.1 16.6 164 97-273 107-335 (388)
28 1s5j_A DNA polymerase I; repli 97.6 0.0003 1E-08 76.7 12.0 155 97-270 191-386 (847)
29 2gv9_A DNA polymerase; polymer 97.5 0.0016 5.4E-08 73.5 16.7 170 97-273 321-550 (1193)
30 3f2b_A DNA-directed DNA polyme 97.5 4.3E-05 1.5E-09 84.6 3.4 46 38-83 124-184 (1041)
31 3d45_A Poly(A)-specific ribonu 97.4 0.0021 7.2E-08 66.2 14.6 85 190-278 277-393 (507)
32 2hnh_A DNA polymerase III alph 97.1 0.00019 6.4E-09 78.9 3.0 46 38-83 14-74 (910)
33 3qex_A DNA polymerase, GP43; d 96.7 0.032 1.1E-06 61.2 16.0 216 35-272 55-337 (903)
34 2hpi_A DNA polymerase III alph 96.5 0.00076 2.6E-08 75.9 2.2 46 38-83 15-77 (1220)
35 4dfk_A DNA polymerase I, therm 96.5 0.0092 3.1E-07 61.9 10.1 118 97-277 11-128 (540)
36 3k59_A POL II, DNA polymerase 95.7 0.22 7.6E-06 53.8 16.1 149 97-273 154-349 (786)
37 3o0f_A Putative metal-dependen 95.6 0.0052 1.8E-07 59.3 2.7 29 43-71 25-53 (301)
38 2yb1_A Amidohydrolase; HET: AM 95.0 0.0098 3.3E-07 56.5 2.7 29 43-71 14-42 (292)
39 3saf_A Exosome component 10; e 93.9 0.77 2.6E-05 46.1 13.7 93 174-279 171-279 (428)
40 2py5_A DNA polymerase; protein 93.1 0.18 6.1E-06 52.6 7.8 130 96-277 6-184 (575)
41 3pv8_A DNA polymerase I; DNA p 92.9 0.12 4.1E-06 54.1 6.2 133 96-277 29-181 (592)
42 3e38_A Two-domain protein cont 92.1 0.052 1.8E-06 53.2 2.0 31 38-70 28-58 (343)
43 2a1r_A Poly(A)-specific ribonu 91.9 0.68 2.3E-05 46.5 10.0 103 162-276 262-396 (430)
44 2yxo_A Histidinol phosphatase; 90.2 0.13 4.6E-06 47.0 2.7 34 38-72 9-42 (267)
45 1m65_A Hypothetical protein YC 89.6 0.14 4.8E-06 46.3 2.3 31 39-70 12-42 (245)
46 1vk0_A Hypothetical protein; h 89.1 0.73 2.5E-05 41.6 6.7 90 174-275 97-205 (206)
47 2anu_A Hypothetical protein TM 89.1 0.13 4.3E-06 47.5 1.5 27 43-69 32-58 (255)
48 1yt3_A Ribonuclease D, RNAse D 85.5 4.2 0.00014 39.5 10.3 92 174-278 63-171 (375)
49 2e6m_A Werner syndrome ATP-dep 82.8 4 0.00014 35.9 8.1 93 175-279 86-197 (208)
50 3b0x_A DNA polymerase beta fam 82.7 0.5 1.7E-05 49.1 2.3 30 43-72 349-378 (575)
51 2hbj_A Exosome complex exonucl 81.8 5.1 0.00017 39.7 9.2 93 174-279 148-256 (410)
52 2w9m_A Polymerase X; SAXS, DNA 78.2 0.92 3.2E-05 47.1 2.5 29 43-71 339-367 (578)
53 3cym_A Uncharacterized protein 70.0 13 0.00045 37.1 8.5 88 174-277 84-187 (440)
54 3qy7_A Tyrosine-protein phosph 50.3 8.4 0.00029 35.7 2.7 28 43-70 14-44 (262)
55 1hy9_A Cocaine and amphetamine 50.1 6.7 0.00023 26.3 1.4 36 323-368 2-37 (41)
56 2wje_A CPS4B, tyrosine-protein 46.8 7.8 0.00027 35.1 1.9 29 42-70 17-48 (247)
57 1v77_A PH1877P, hypothetical p 43.0 7 0.00024 34.9 0.9 22 48-70 16-37 (212)
58 3dcp_A Histidinol-phosphatase; 41.0 14 0.00047 34.6 2.7 26 46-71 18-43 (283)
59 2a1r_A Poly(A)-specific ribonu 28.4 86 0.0029 31.1 6.2 49 96-144 22-95 (430)
60 2gai_A DNA topoisomerase I; zi 24.4 15 0.00051 38.6 -0.2 23 345-372 589-611 (633)
No 1
>3cg7_A CRN-4, cell death-related nuclease 4; hydrolase, apoptosis, 3'-5' exonuclease, deddh; 2.50A {Caenorhabditis elegans} PDB: 3cm5_A 3cm6_A
Probab=100.00 E-value=7.3e-41 Score=326.31 Aligned_cols=196 Identities=29% Similarity=0.475 Sum_probs=173.6
Q ss_pred CCCccEEEEEEeeCCCCCCCCCCCceEEEceEEEEcCCCeEEE--EEEEeecCCCCCCCCcchhhhcCCChHHHhCCCCH
Q 017267 93 QEFQYFVVIDFEATCDKDKNPYPQEIIEFPSVIVSSVTGQLEA--CFQTYVRPTCNQLLSDFCKDLTGIQQIQVDRGVTL 170 (374)
Q Consensus 93 ~~~~~~VVfDlETTGl~~~~~~~deIIEIGAVkvd~~~G~iid--sF~~lVkP~~~p~Is~~~~~LTGIt~e~v~~ap~~ 170 (374)
+.+++|||||+||||++.....+.+|||||||++|.++|++++ +|++||||...+.|+++++++||||++||++||+|
T Consensus 16 ~~~~~~vviD~ETTGl~~~~d~~~eIIEIgaV~vd~~~g~i~~~~~f~~lV~P~~~p~i~~~~~~ltGIt~e~v~~ap~~ 95 (308)
T 3cg7_A 16 CPFDTLLILDFETTSDAANQDYPCEVIQFAIVAYDVPNDKIREDISFNKYVKPVLNRTLTKNCVDFTGIPQRSIDTADTF 95 (308)
T ss_dssp CCCSEEEEEEEEECCBTTBCSCCCCEEEEEEEEEETTTTEEEEEEEEEEECBCSSBCSCCHHHHHHHCCCHHHHHTSCBH
T ss_pred CCCCeEEEEEeecCCCCCCCCCCCCeEEEEEEEEEcCCCEEeeccceeeEECCCCCCCCCHHHHHHcCCCHHHHhcCCCH
Confidence 3557899999999998432112349999999999977899998 99999999964559999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCCCCccEEEEEcCcchHHHHHHHHHHHcCCCCCCCCCceeehHHHHHHhcCC-C------CCCHHH
Q 017267 171 SEALLRHDKWLENKGIKNTNFAVVTWSNWDCRVMLESECRFKKIWKPPYFNRWINLKVPFHEVFGG-V------RCNLKE 243 (374)
Q Consensus 171 ~eVl~ef~~fl~~~~l~~~n~~vv~~g~fDl~~fL~~~~~~~gi~~P~~~~~~iDt~~l~~~~~~~-~------~~~L~~ 243 (374)
++|+++|.+|+++..+++||+++++||.||++.||+.+|+++|+..|.++++|+||+.+++.+++. . +++|.+
T Consensus 96 ~evl~~f~~~l~~~~lvahn~~lv~~g~fD~~~fL~~~~~~~g~~~p~~~~~~iDt~~l~~~~~~~~~~~~~~~~~~L~~ 175 (308)
T 3cg7_A 96 DVVYEQFQQWLITLGLEEGKFAFVCDSRQDLWRIAQYQMKLSNIQMPAFFRQYINLYKIFTNEMDRMGPKELSATTNIGK 175 (308)
T ss_dssp HHHHHHHHHHHHHHCCCTTSEEEEESSSHHHHTHHHHHHHHTTCCCCGGGSEEEEHHHHHHHHHHHHCCCCCCCCSHHHH
T ss_pred HHHHHHHHHHHHhCCcCCcceEEeccCcccHHHHHHHHHHHcCCCCchhhcceeeHHHHHHHHhccccccccccCcCHHH
Confidence 999999999999999999999999999999746999999999999886667899999999877642 1 578999
Q ss_pred HHHHcCCCCCCCCCcHHHHHHHHHHHHHHHHHccCcccccccccc
Q 017267 244 AVEMAGLAWQGRAHCGLDDAKNTARLLALLMHRGFKFSITNSLMW 288 (374)
Q Consensus 244 l~~~lgI~~~g~~HrALdDA~atA~l~~~ll~~g~~~~i~~~l~~ 288 (374)
++++|||+.++++|||++||++||+||.+|++++..+++++++..
T Consensus 176 l~~~~gi~~~~~~HrAl~DA~ata~l~~~l~~~~~~~~i~~~~~~ 220 (308)
T 3cg7_A 176 MNEYYDLPTIGRAHDAMDDCLNIATILQRMINMGAKVTVNELLTC 220 (308)
T ss_dssp HHHHTTCCCCSCTTCHHHHHHHHHHHHHHHHHTTCCCCCCEEEES
T ss_pred HHHHcCCCCCCCCcCHHHHHHHHHHHHHHHHHcCCCCChHHHHhh
Confidence 999999999877899999999999999999999999999998764
No 2
>1w0h_A 3'-5' exonuclease ERI1; nuclease domain, hydrolase; HET: AMP; 1.59A {Homo sapiens} SCOP: c.55.3.5
Probab=100.00 E-value=4.1e-39 Score=293.48 Aligned_cols=192 Identities=36% Similarity=0.736 Sum_probs=168.4
Q ss_pred CCccEEEEEEeeCCCCCCC-CCCCceEEEceEEEEcCCCeEEEEEEEeecCCCCCCCCcchhhhcCCChHHHhCCCCHHH
Q 017267 94 EFQYFVVIDFEATCDKDKN-PYPQEIIEFPSVIVSSVTGQLEACFQTYVRPTCNQLLSDFCKDLTGIQQIQVDRGVTLSE 172 (374)
Q Consensus 94 ~~~~~VVfDlETTGl~~~~-~~~deIIEIGAVkvd~~~G~iidsF~~lVkP~~~p~Is~~~~~LTGIt~e~v~~ap~~~e 172 (374)
.++.|||||+||||++... +..++|||||||+++.++|+++++|++||||..++.|+++++++||||++||+++|+|++
T Consensus 8 ~~~~~vviD~ETTGl~~~~~~~~~~Iieigav~~~~~~g~i~~~f~~lv~P~~~~~i~~~~~~i~GIt~~~l~~~~~~~~ 87 (204)
T 1w0h_A 8 YYDYICIIDFEATCEEGNPPEFVHEIIEFPVVLLNTHTLEIEDTFQQYVRPEINTQLSDFCISLTGITQDQVDRADTFPQ 87 (204)
T ss_dssp SSSEEEECCCEECCCTTCCTTSCCCEEEEEEEEEETTTCSEEEEEEEEBCCSSSCSCCHHHHHHHCCCHHHHHTSBCHHH
T ss_pred CcCEEEEEEEecCCcCCCCCCCCCcEEEEEEEEEECCCCEEeeeeeeEECCCCCCccCHHHHHHhCCCHHHHhCCCCHHH
Confidence 4578999999999985211 257999999999998668999999999999986556999999999999999999999999
Q ss_pred HHHHHHHHHhhcCC-CCccEEEEEcCcchHHH-HHHHHHHHcCCCCCCCCCceeehHHHHHHhcCC--CCCCHHHHHHHc
Q 017267 173 ALLRHDKWLENKGI-KNTNFAVVTWSNWDCRV-MLESECRFKKIWKPPYFNRWINLKVPFHEVFGG--VRCNLKEAVEMA 248 (374)
Q Consensus 173 Vl~ef~~fl~~~~l-~~~n~~vv~~g~fDl~~-fL~~~~~~~gi~~P~~~~~~iDt~~l~~~~~~~--~~~~L~~l~~~l 248 (374)
|+++|.+|+++..+ ....++|+||+.||+ . ||+++|+++|++.|.+..+|+||+.+++.+++. .+++|++++++|
T Consensus 88 v~~~~~~~l~~~~~~~~~~~lv~hn~~fD~-~~~L~~~~~~~~~~~p~~~~~~~dt~~l~~~~~~~~~~~~~L~~l~~~~ 166 (204)
T 1w0h_A 88 VLKKVIDWMKLKELGTKYKYSLLTDGSWDM-SKFLNIQCQLSRLKYPPFAKKWINIRKSYGNFYKVPRSQTKLTIMLEKL 166 (204)
T ss_dssp HHHHHHHHHHHTTBTTTBCEEEEESSTTTT-HHHHHHHHHHHTCCCCGGGSEEEEHHHHHHHHHTCCGGGCSHHHHHHHT
T ss_pred HHHHHHHHHHhcCCCCCCcEEEEEECcchH-HHHHHHHHHHhCCCCcccccceEEHHHHHHHHhCCCCccchHHHHHHHc
Confidence 99999999998752 234467899999997 6 999999999999875555899999999988764 358999999999
Q ss_pred CCCCCCCCCcHHHHHHHHHHHHHHHHHccCcccccccc
Q 017267 249 GLAWQGRAHCGLDDAKNTARLLALLMHRGFKFSITNSL 286 (374)
Q Consensus 249 gI~~~g~~HrALdDA~atA~l~~~ll~~g~~~~i~~~l 286 (374)
|++.++++|||++||++||+||.+|++++..+.|++++
T Consensus 167 gi~~~~~~H~Al~Da~~ta~l~~~l~~~~~~~~i~~~~ 204 (204)
T 1w0h_A 167 GMDYDGRPHCGLDDSKNIARIAVRMLQDGCELRINEKM 204 (204)
T ss_dssp TCCCCSCTTCHHHHHHHHHHHHHHHHHTTCCCCCCEEC
T ss_pred CCCCCCCccCcHHHHHHHHHHHHHHHHCCCeeeecCcC
Confidence 99987778999999999999999999999999999864
No 3
>2xri_A ERI1 exoribonuclease 3; hydrolase, metal binding; 2.15A {Homo sapiens}
Probab=100.00 E-value=3.3e-38 Score=293.50 Aligned_cols=188 Identities=39% Similarity=0.715 Sum_probs=163.3
Q ss_pred CCCccEEEEEEeeCCCCCCCCCC--CceEEEceEEEEcCCCeEEEEEEEeecCCCCCCCCcchhhhcCCChHHHhCCCCH
Q 017267 93 QEFQYFVVIDFEATCDKDKNPYP--QEIIEFPSVIVSSVTGQLEACFQTYVRPTCNQLLSDFCKDLTGIQQIQVDRGVTL 170 (374)
Q Consensus 93 ~~~~~~VVfDlETTGl~~~~~~~--deIIEIGAVkvd~~~G~iidsF~~lVkP~~~p~Is~~~~~LTGIt~e~v~~ap~~ 170 (374)
+.++.|||||+||||++ +.. ++|||||||+++..+|+++++|++||||..++.|+++++++||||++||++||+|
T Consensus 28 ~~~~~~vviD~ETTGl~---~~~d~~~IieIgav~v~~~~~~i~~~f~~lV~P~~~~~i~~~~~~ltGIt~~~v~~a~~~ 104 (224)
T 2xri_A 28 QRYHYFLVLDFEATCDK---PQIHPQEIIEFPILKLNGRTMEIESTFHMYVQPVVHPQLTPFCTELTGIIQAMVDGQPSL 104 (224)
T ss_dssp CSCSEEEEECCEECCCC----CCSSCCEEEEEEEEEETTTCCEEEEEEEECCCSSSCSCCHHHHHHHCCCHHHHTTCCCH
T ss_pred CCCCeEEEEEEEcCCCC---CCCCCcceEEEEEEEEecCCcEEeeeeeeEECCCCCCcCCHHHHHHhCcCHHHHcCCCCH
Confidence 34568999999999974 333 5999999999985557999999999999865569999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCCCCccE--EEEEcCcchHHHH-HHHHHHHcCCCCCCCCCceeehHHHHHHhcC-CCCCCHHHHHH
Q 017267 171 SEALLRHDKWLENKGIKNTNF--AVVTWSNWDCRVM-LESECRFKKIWKPPYFNRWINLKVPFHEVFG-GVRCNLKEAVE 246 (374)
Q Consensus 171 ~eVl~ef~~fl~~~~l~~~n~--~vv~~g~fDl~~f-L~~~~~~~gi~~P~~~~~~iDt~~l~~~~~~-~~~~~L~~l~~ 246 (374)
++|+++|.+|+++..+++||. ++++||.||+ .| |+++|++.|++.|.++..|+|++..++...+ ..+++|..+++
T Consensus 105 ~~v~~~f~~~l~~~~lv~hn~~~~~~t~g~fD~-~fll~~~~~~~g~~~p~~~~~~iD~~~~~~~~~~~~p~~~L~~l~~ 183 (224)
T 2xri_A 105 QQVLERVDEWMAKEGLLDPNVKSIFVTCGDWDL-KVMLPGQCQYLGLPVADYFKQWINLKKAYSFAMGCWPKNGLLDMNK 183 (224)
T ss_dssp HHHHHHHHHHHHHTTTTSTTSCEEEEESSSHHH-HTHHHHHHHHHTCCCCGGGSCEEEHHHHHHHHHTSCCTTTHHHHHH
T ss_pred HHHHHHHHHHHhhcccccCCCceEEEEeChhhH-HHHHHHHHHHhCCCCcccccceEeHHHHHHHHhccCCCCCHHHHHH
Confidence 999999999999999999864 7899999997 76 8899999999987655689997765554433 23589999999
Q ss_pred HcCCCCCCCCCcHHHHHHHHHHHHHHHHHccCcccccc
Q 017267 247 MAGLAWQGRAHCGLDDAKNTARLLALLMHRGFKFSITN 284 (374)
Q Consensus 247 ~lgI~~~g~~HrALdDA~atA~l~~~ll~~g~~~~i~~ 284 (374)
+||++.++++|||++||++||+||.+|++++..+.+|.
T Consensus 184 ~~gi~~~~~~H~Al~DA~~ta~l~~~l~~~g~~~~it~ 221 (224)
T 2xri_A 184 GLSLQHIGRPHSGIDDCKNIANIMKTLAYRGFIFKQTS 221 (224)
T ss_dssp HTTCCCCSCTTCHHHHHHHHHHHHHHHHHTTCCCCCCS
T ss_pred HcCCCCCCCCcChHHHHHHHHHHHHHHHHcCCEEeecC
Confidence 99999877789999999999999999999999888876
No 4
>1zbh_A 3'-5' exonuclease ERI1; histone mRNA 3'-END-specific recognition, structures of 3'- exonuclease and ITS RNA complex, hydrolase/RNA complex; HET: AMP; 3.00A {Homo sapiens}
Probab=100.00 E-value=7.6e-38 Score=303.44 Aligned_cols=238 Identities=29% Similarity=0.555 Sum_probs=187.1
Q ss_pred ChhhHHHHHHhcCCcceeecccC--CCCcccccccccccccCCCCCCCCCCccEEEEEEeeCCCCCC-CCCCCceEEEce
Q 017267 47 PGGDAGESIHQLSSEFVEYSNEF--YNNPTYQHDFGSWSTFYPDSQKPQEFQYFVVIDFEATCDKDK-NPYPQEIIEFPS 123 (374)
Q Consensus 47 ~~~~~~~~a~~~g~~a~aitd~~--~~k~~y~~e~~~~~~~~~~~~~~~~~~~~VVfDlETTGl~~~-~~~~deIIEIGA 123 (374)
+.+++.+.++..|.+.-+..+-- .+|..|..+...... +....+.++.|||||+||||++.. ++..++||||||
T Consensus 30 ~~~~l~~~l~~~~l~~~g~~~~l~~~l~~~~~~~~~~~~~---~~~~~~~~~~~vviD~ETTGl~~~~~~~~~~IIeIga 106 (299)
T 1zbh_A 30 SKEELRAKLSEFKLETRGVKDVLKKRLKNYYKKQKLMLKE---SNFADSYYDYICIIDFEATCEEGNPPEFVHEIIEFPV 106 (299)
T ss_dssp CHHHHHHHHHHTTCCCCSCHHHHHHHHHHHHHHHHHHHHH---HHHHCCSCSEEEEECCEECCCTTCCTTCCCCEEEEEE
T ss_pred cHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHHhhhhccc---ccccCCCCceEEEEEeecccCCCCCCCCCCceEEEEE
Confidence 34567777777765533221110 234445443221111 011112356899999999998531 256799999999
Q ss_pred EEEEcCCCeEEEEEEEeecCCCCCCCCcchhhhcCCChHHHhCCCCHHHHHHHHHHHHhhcCCC-CccEEEEEcCcchHH
Q 017267 124 VIVSSVTGQLEACFQTYVRPTCNQLLSDFCKDLTGIQQIQVDRGVTLSEALLRHDKWLENKGIK-NTNFAVVTWSNWDCR 202 (374)
Q Consensus 124 Vkvd~~~G~iidsF~~lVkP~~~p~Is~~~~~LTGIt~e~v~~ap~~~eVl~ef~~fl~~~~l~-~~n~~vv~~g~fDl~ 202 (374)
|+++..+|+++++|++||+|..++.|+++++++||||++||++||+|++|+.+|.+|+++..+. ...++|+||+.||+
T Consensus 107 V~v~~~~g~i~~~f~~lV~P~~~~~i~~~~~~ihGIt~e~v~~ap~~~evl~~f~~~l~~~~~~~~~~~lVahn~~fD~- 185 (299)
T 1zbh_A 107 VLLNTHTLEIEDTFQQYVRPEINTQLSDFCISLTGITQDQVDRADTFPQVLKKVIDLMKLKELGTKYKYSLLTDGSWDM- 185 (299)
T ss_dssp EEEETTTCCEEEEEEEEBCCSSSCSCCHHHHHHHCCCHHHHHTSBCHHHHHHHHHHHHHHTTBTTTBCEEEEESSSHHH-
T ss_pred EEEECCCCeEeeeeeeeecCCCCCCCCHHHHHHhCCCHHHHhcCCCHHHHHHHHHHHHhhcccCCCCcEEEEEeCHHHH-
Confidence 9998667899999999999986556999999999999999999999999999999999986321 12467899999997
Q ss_pred H-HHHHHHHHcCCCCCCCCCceeehHHHHHHhcCCCC--CCHHHHHHHcCCCCCCCCCcHHHHHHHHHHHHHHHHHccCc
Q 017267 203 V-MLESECRFKKIWKPPYFNRWINLKVPFHEVFGGVR--CNLKEAVEMAGLAWQGRAHCGLDDAKNTARLLALLMHRGFK 279 (374)
Q Consensus 203 ~-fL~~~~~~~gi~~P~~~~~~iDt~~l~~~~~~~~~--~~L~~l~~~lgI~~~g~~HrALdDA~atA~l~~~ll~~g~~ 279 (374)
. ||+.+|+++|++.|.+..+|+|++.+++.+++..+ ++|.+++++|||+.++++|||++||++||+||.+|++++..
T Consensus 186 ~~fL~~~~~~~g~~~p~~~~~~iDt~~l~~~~~~~~~~~~~L~~l~~~~gi~~~g~~H~Al~DA~ata~l~~~l~~~~~~ 265 (299)
T 1zbh_A 186 SKFLNIQCQLSRLKYPPFAKKWINIRKSYGNFYKVPRSQTKLTIMLEKLGMDYDGRPNCGLDDSKNIARIAVRMLQDGCE 265 (299)
T ss_dssp HTHHHHHHHHTTBCCCGGGSEEEEHHHHHHHHHTCCGGGCSHHHHHHHTTCCCCSCTTCHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHcCCCCCcccchHHHHHHHHHHHhCCCCCCccHHHHHHHcCCCCCCCCCChHHHHHHHHHHHHHHHHhCCc
Confidence 7 99999999999987655689999999988876544 89999999999998877899999999999999999999998
Q ss_pred ccccccccc
Q 017267 280 FSITNSLMW 288 (374)
Q Consensus 280 ~~i~~~l~~ 288 (374)
+.+++++..
T Consensus 266 ~~~~~l~~~ 274 (299)
T 1zbh_A 266 LRINEKMHA 274 (299)
T ss_dssp CCCCEEEET
T ss_pred CChhhhhhc
Confidence 988887665
No 5
>1zbu_A ERI-1 homolog, 3'-5' exonuclease ERI1; hydrolase; HET: AMP; 3.00A {Homo sapiens}
Probab=100.00 E-value=6.2e-38 Score=310.65 Aligned_cols=248 Identities=29% Similarity=0.532 Sum_probs=170.7
Q ss_pred cccCCCCCC---ChhhHHHHHHhcCCcceeecccC--CCCcccccccccccccCCCCCCCCCCccEEEEEEeeCCCCCC-
Q 017267 38 ELKDDTIVH---PGGDAGESIHQLSSEFVEYSNEF--YNNPTYQHDFGSWSTFYPDSQKPQEFQYFVVIDFEATCDKDK- 111 (374)
Q Consensus 38 ~~~~~~~~~---~~~~~~~~a~~~g~~a~aitd~~--~~k~~y~~e~~~~~~~~~~~~~~~~~~~~VVfDlETTGl~~~- 111 (374)
|++...|.. +.+++.+.++..+.+.-+..+.- .+|..|..+.+... ......+.++.|||||+||||++..
T Consensus 68 ~~~~~~~~i~~~~~~~l~~~l~~~~l~~~G~~~vl~~~l~~~y~~~~~~~~---~~~~~~~~~~~~vviD~ETTGl~~~~ 144 (349)
T 1zbu_A 68 EIAITNGCINRMSKEELRAKLSEFKLETRGVKDVLKKRLKNYYKKQKLMLK---ESNFADSYYDYICIIDFEATCEEGNP 144 (349)
T ss_dssp ------------------------------------------------------------CCCSEEEECCCEECCCTTCC
T ss_pred HHHHhhcccccCCHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhhcccccC---cCccccccCCeEEEEEEecCCCCCcC
Confidence 555555543 45677777777766654433222 23444444322211 1122223457899999999998531
Q ss_pred CCCCCceEEEceEEEEcCCCeEEEEEEEeecCCCCCCCCcchhhhcCCChHHHhCCCCHHHHHHHHHHHHhhcCCC-Ccc
Q 017267 112 NPYPQEIIEFPSVIVSSVTGQLEACFQTYVRPTCNQLLSDFCKDLTGIQQIQVDRGVTLSEALLRHDKWLENKGIK-NTN 190 (374)
Q Consensus 112 ~~~~deIIEIGAVkvd~~~G~iidsF~~lVkP~~~p~Is~~~~~LTGIt~e~v~~ap~~~eVl~ef~~fl~~~~l~-~~n 190 (374)
++..++|||||||+++..+|+++++|++||+|..++.|+++++++||||++||++|++|.+|+.+|.+|+++..+. ...
T Consensus 145 ~~~~deIIEIgaV~vd~~~g~i~~~f~~lVkP~~~~~I~~~~t~ihGIT~e~v~~ap~~~eVl~~f~~~l~~~~~~~~~~ 224 (349)
T 1zbu_A 145 PEFVHEIIEFPVVLLNTHTLEIEDTFQQYVRPEINTQLSDFCISLTGITQDQVDRADTFPQVLKKVIDLMKLKELGTKYK 224 (349)
T ss_dssp TTCCCCEEECCEEEEETTTTEEEEEECCBEECSSSCSCCHHHHHHHCCCHHHHHTSEEHHHHHHHHHHHHHHTTBTTTBC
T ss_pred CCCCCeEEEEEEEEEECCCceEeEEEEEEECCCCCCCCCHHHHHHhCCCHHHHhCCCCHHHHHHHHHHHHhcccccCCCc
Confidence 3567999999999998667999999999999996556999999999999999999999999999999999985321 124
Q ss_pred EEEEEcCcchHHH-HHHHHHHHcCCCCCCCCCceeehHHHHHHhcCCCC--CCHHHHHHHcCCCCCCCCCcHHHHHHHHH
Q 017267 191 FAVVTWSNWDCRV-MLESECRFKKIWKPPYFNRWINLKVPFHEVFGGVR--CNLKEAVEMAGLAWQGRAHCGLDDAKNTA 267 (374)
Q Consensus 191 ~~vv~~g~fDl~~-fL~~~~~~~gi~~P~~~~~~iDt~~l~~~~~~~~~--~~L~~l~~~lgI~~~g~~HrALdDA~atA 267 (374)
++|+||+.||+ . ||+.+|+++|+..|.+..+|+|++.+++.+++..+ ++|.+++++|||+..+++|||++||++||
T Consensus 225 ~lVaHNa~FD~-~~fL~~~~~~~g~~~p~~~~~~iDt~~l~~~~~~~~~~~~~L~~l~~~~gi~~~g~~HrAl~DA~ata 303 (349)
T 1zbu_A 225 YSLLTDGSWDM-SKFLNIQCQLSRLKYPPFAKKWINIRKSYGNFYKVPRSQTKLTIMLEKLGMDYDGRPHCGLDDSKNIA 303 (349)
T ss_dssp EEEEESSSHHH-HTHHHHHHHHTTBCCCGGGSEEEEHHHHHHHHHTCCGGGGSHHHHHHHTTCCCCSCTTCHHHHHHHHH
T ss_pred EEEEECcHhhH-HHHHHHHHHHhCCCCccccchHHHHHHHHHHHhcCCCCCCCHHHHHHHcCCCCCCCCCCHHHHHHHHH
Confidence 68899999997 7 99999999999887655689999999988876544 89999999999998877899999999999
Q ss_pred HHHHHHHHccCccccccccccc
Q 017267 268 RLLALLMHRGFKFSITNSLMWQ 289 (374)
Q Consensus 268 ~l~~~ll~~g~~~~i~~~l~~~ 289 (374)
+||.+|++++..+.+++++...
T Consensus 304 ~ll~~ll~~~~~~~i~ell~~~ 325 (349)
T 1zbu_A 304 RIAVRMLQDGCELRINEKMHAG 325 (349)
T ss_dssp HHHHHHHHTTCCCCCCEEEETT
T ss_pred HHHHHHHHhcccCCHHHHHhhc
Confidence 9999999999988888876653
No 6
>2gui_A DNA polymerase III epsilon subunit; DNA polymerase proofreading domain, transferase; HET: DNA U5P; 1.60A {Escherichia coli} SCOP: c.55.3.5 PDB: 1j54_A* 1j53_A* 2ido_A* 2xy8_A*
Probab=100.00 E-value=3.7e-34 Score=259.31 Aligned_cols=172 Identities=19% Similarity=0.156 Sum_probs=147.0
Q ss_pred ccEEEEEEeeCCCCCCCC--CCCceEEEceEEEEcCCCeEE-EEEEEeecCCCCCCCCcchhhhcCCChHHHhCCCCHHH
Q 017267 96 QYFVVIDFEATCDKDKNP--YPQEIIEFPSVIVSSVTGQLE-ACFQTYVRPTCNQLLSDFCKDLTGIQQIQVDRGVTLSE 172 (374)
Q Consensus 96 ~~~VVfDlETTGl~~~~~--~~deIIEIGAVkvd~~~G~ii-dsF~~lVkP~~~p~Is~~~~~LTGIt~e~v~~ap~~~e 172 (374)
..|||||+||||++...+ ..++|||||||+++ +|+++ ++|++||+|.. .++++++++||||++||+++|+|++
T Consensus 9 ~~~vviD~ETTGl~~~~~~~~~~~Iieig~v~~~--~~~~~~~~f~~lv~P~~--~i~~~~~~i~GIt~~~l~~~~~~~~ 84 (194)
T 2gui_A 9 TRQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVV--NRRLTGNNFHVYLKPDR--LVDPEAFGVHGIADEFLLDKPTFAE 84 (194)
T ss_dssp CEEEEEEEEESCCCSSSSTTTTCCEEEEEEEEEE--TTEECSCCEEEECCCSS--CCCHHHHHHHCCCHHHHTTSCCHHH
T ss_pred CCEEEEEeeCCCCCCcccCCCCCEEEEEEEEEEE--CCeEeccEEEEEECcCC--cCCHHHHHhhCcCHHHHhCCCCHHH
Confidence 479999999999742110 45899999999996 68876 47999999985 5999999999999999999999999
Q ss_pred HHHHHHHHHhhcCCCCccEEEEEcCcchHHHHHHHHHHHcCCCCCCCC--CceeehHHHHHHhcCCCCCCHHHHHHHcCC
Q 017267 173 ALLRHDKWLENKGIKNTNFAVVTWSNWDCRVMLESECRFKKIWKPPYF--NRWINLKVPFHEVFGGVRCNLKEAVEMAGL 250 (374)
Q Consensus 173 Vl~ef~~fl~~~~l~~~n~~vv~~g~fDl~~fL~~~~~~~gi~~P~~~--~~~iDt~~l~~~~~~~~~~~L~~l~~~lgI 250 (374)
|+++|.+|+++. .+|+||+.||+ .||+.+|+++|+..|.+. ..++||..+++.+++..+++|++++++||+
T Consensus 85 v~~~~~~~l~~~------~lv~hn~~fD~-~~L~~~~~~~g~~~p~~~~~~~~iDt~~l~~~~~p~~~~~L~~l~~~~gi 157 (194)
T 2gui_A 85 VADEFMDYIRGA------ELVIHNAAFDI-GFMDYEFSLLKRDIPKTNTFCKVTDSLAVARKMFPGKRNSLDALCARYEI 157 (194)
T ss_dssp HHHHHHHHHTTS------EEEETTHHHHH-HHHHHHHHHTCSCCCCGGGTSEEEEHHHHHHHHSTTSCCSHHHHHHHTTC
T ss_pred HHHHHHHHHCCC------eEEEEchHHhH-HHHHHHHHHcCCCCccccccCceeeHHHHHHHHcCCCCCCHHHHHHHcCc
Confidence 999999999875 35677889997 899999999999877543 589999999988887667899999999999
Q ss_pred CCCC-CCCcHHHHHHHHHHHHHHHHHccC
Q 017267 251 AWQG-RAHCGLDDAKNTARLLALLMHRGF 278 (374)
Q Consensus 251 ~~~g-~~HrALdDA~atA~l~~~ll~~g~ 278 (374)
+..+ .+|+|++||++||+||.+|+++..
T Consensus 158 ~~~~~~~H~Al~Da~~ta~l~~~l~~~~~ 186 (194)
T 2gui_A 158 DNSKRTLHGALLDAQILAEVYLAMTGGQT 186 (194)
T ss_dssp CCTTCSSCCHHHHHHHHHHHHHHHTC---
T ss_pred CCCCCCCCChHHHHHHHHHHHHHHHhccc
Confidence 9875 389999999999999999886544
No 7
>2p1j_A POLIII, DNA polymerase III POLC-type; structural genomics, exonuclease, PSI-2, protein structure initiative; HET: DNA; 2.50A {Thermotoga maritima MSB8}
Probab=100.00 E-value=4.8e-34 Score=257.89 Aligned_cols=168 Identities=27% Similarity=0.302 Sum_probs=147.8
Q ss_pred ccEEEEEEeeCCCCCCCCCCCceEEEceEEEEcCCCeEEEEEEEeecCCCCCCCCcchhhhcCCChHHHhCCCCHHHHHH
Q 017267 96 QYFVVIDFEATCDKDKNPYPQEIIEFPSVIVSSVTGQLEACFQTYVRPTCNQLLSDFCKDLTGIQQIQVDRGVTLSEALL 175 (374)
Q Consensus 96 ~~~VVfDlETTGl~~~~~~~deIIEIGAVkvd~~~G~iidsF~~lVkP~~~p~Is~~~~~LTGIt~e~v~~ap~~~eVl~ 175 (374)
..||+||+||||+ ++..++|||||||+++ +|+++++|++||+|.. .++++++++||||++||++++++++|++
T Consensus 12 ~~~v~iD~ETTGl---~~~~~~IieIg~v~~~--~g~i~~~f~~lv~P~~--~i~~~~~~i~GIt~~~l~~~~~~~~v~~ 84 (186)
T 2p1j_A 12 ATFVVLDFETTGL---DPQVDEIIEIGAVKIQ--GGQIVDEYHTLIKPSR--EISRKSSEITGITQEMLENKRSIEEVLP 84 (186)
T ss_dssp -CEEEEEEEESCS---CTTTCCEEEEEEEEEE--TTEEEEEEEEECBCSS--CCCHHHHHHHCCCHHHHTTCCBHHHHHH
T ss_pred CCEEEEEEECCCC---CCCCCeEEEEEEEEEE--CCEEEEEEEEEECcCC--CCCHHHhhhcCCCHHHHhcCCCHHHHHH
Confidence 5799999999997 4667899999999995 7999999999999986 4999999999999999999999999999
Q ss_pred HHHHHHhhcCCCCccEEEEEcCcchHHHHHHHHHHHcCCCCCCCCCceeehHHHHHHhcCCCCCCHHHHHHHcCCCCCCC
Q 017267 176 RHDKWLENKGIKNTNFAVVTWSNWDCRVMLESECRFKKIWKPPYFNRWINLKVPFHEVFGGVRCNLKEAVEMAGLAWQGR 255 (374)
Q Consensus 176 ef~~fl~~~~l~~~n~~vv~~g~fDl~~fL~~~~~~~gi~~P~~~~~~iDt~~l~~~~~~~~~~~L~~l~~~lgI~~~g~ 255 (374)
+|.+|+++. .+|+||+.||+ .||++++++.|++.|. .+++||..+++.+++.++++|+.++++||++.. .
T Consensus 85 ~~~~~l~~~------~lv~hn~~fD~-~~L~~~~~~~g~~~~~--~~~iDt~~l~~~~~~~~~~~L~~l~~~~gi~~~-~ 154 (186)
T 2p1j_A 85 EFLGFLEDS------IIVAHNANFDY-RFLRLWIKKVMGLDWE--RPYIDTLALAKSLLKLRSYSLDSVVEKLGLGPF-R 154 (186)
T ss_dssp HHHHHSSSC------EEEETTHHHHH-HHHHHHHHHHHCCCCC--CCEEEHHHHHHHHTCCSCCSHHHHHHHTTCCST-T
T ss_pred HHHHHHCCC------EEEEECcHHHH-HHHHHHHHHcCCCCCC--CCEEeHHHHHHHHhhcCCCCHHHHHHHcCCCCC-C
Confidence 999999864 35677889997 8999999999987653 579999999988776678999999999999976 4
Q ss_pred CCcHHHHHHHHHHHHHHHHHccCcc
Q 017267 256 AHCGLDDAKNTARLLALLMHRGFKF 280 (374)
Q Consensus 256 ~HrALdDA~atA~l~~~ll~~g~~~ 280 (374)
+|+|++||++|++||.+|++++.+-
T Consensus 155 ~H~Al~Da~~t~~l~~~l~~~~~~~ 179 (186)
T 2p1j_A 155 HHRALDDARVTAQVFLRFVEMMKKE 179 (186)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCC---
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHhh
Confidence 7999999999999999998876543
No 8
>3mxm_B Three prime repair exonuclease 1; RNAse H-like fold, polyproline type II helix, hydrolase-DNA; HET: DNA; 1.75A {Mus musculus} SCOP: c.55.3.5 PDB: 3mxj_B 2ioc_B 3mxi_B* 3b6o_A* 2o4g_A* 3b6p_A* 2o4i_A 2oa8_A
Probab=100.00 E-value=3.6e-33 Score=263.16 Aligned_cols=174 Identities=13% Similarity=0.079 Sum_probs=143.9
Q ss_pred CccEEEEEEeeCCCCCCCCCCCceEEEceEEEEcCC--------C---------eEEEEEEEeecCCCCCCCCcchhhhc
Q 017267 95 FQYFVVIDFEATCDKDKNPYPQEIIEFPSVIVSSVT--------G---------QLEACFQTYVRPTCNQLLSDFCKDLT 157 (374)
Q Consensus 95 ~~~~VVfDlETTGl~~~~~~~deIIEIGAVkvd~~~--------G---------~iidsF~~lVkP~~~p~Is~~~~~LT 157 (374)
..+|||||+||||+ ++..++|||||||+++... | +++++|+++|||.. .|+++++++|
T Consensus 11 ~~~~vv~D~ETTGl---~~~~d~IiEIgav~v~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~li~P~~--~i~~~~~~i~ 85 (242)
T 3mxm_B 11 MQTLIFLDLEATGL---PSSRPEVTELCLLAVHRRALENTSISQGHPPPVPRPPRVVDKLSLCIAPGK--ACSPGASEIT 85 (242)
T ss_dssp CSEEEEEEEEESSC---GGGCCCEEEEEEEEEEHHHHHTSCCCCSSSCCCCCCCSCCEEEEEECCCSS--CCCHHHHHHH
T ss_pred cceEEEEEeecCCC---CCCCCeeEEEEEEEecCCcccccccccccccccccccchhheeEEEECCCC--CCCHHHHHhc
Confidence 46899999999997 5677999999999996320 1 68899999999985 5999999999
Q ss_pred CCChHHHhCC--CCHH-HHHHHHHHHHhhcCCCCccEEEEEcC-cchHHHHHHHHHHHcCCCCCCCCCceeehHHHHHHh
Q 017267 158 GIQQIQVDRG--VTLS-EALLRHDKWLENKGIKNTNFAVVTWS-NWDCRVMLESECRFKKIWKPPYFNRWINLKVPFHEV 233 (374)
Q Consensus 158 GIt~e~v~~a--p~~~-eVl~ef~~fl~~~~l~~~n~~vv~~g-~fDl~~fL~~~~~~~gi~~P~~~~~~iDt~~l~~~~ 233 (374)
|||++||.++ |+|+ +|+++|.+|+++.. ....+|+||+ .||+ .||+++++++|+.++.....++|++.+++.+
T Consensus 86 GIt~~~l~~~g~p~~~~ev~~~~~~fl~~~~--~~~~lVaHNav~FD~-~fL~~~~~r~g~~~~~~~~~~iDtl~l~r~l 162 (242)
T 3mxm_B 86 GLSKAELEVQGRQRFDDNLAILLRAFLQRQP--QPCCLVAHNGDRYDF-PLLQTELARLSTPSPLDGTFCVDSIAALKAL 162 (242)
T ss_dssp CCCHHHHHHTTCCCSCHHHHHHHHHHHHTSC--SSEEEEETTTTTTHH-HHHHHHHHTSSSCCTTTTCEEEEHHHHHHHH
T ss_pred CCCHHHHHhcCCCchhHHHHHHHHHHHhcCC--CCCEEEEcCChHhhH-HHHHHHHHHcCCCCCccCCeEeehHHHHHHH
Confidence 9999999988 8996 99999999999721 1124567787 9997 8999999999988642234789999887755
Q ss_pred c----C-----CCCCCHHHHHHH-cCCCCCCCCCcHHHHHHHHHHHHHHHHHcc
Q 017267 234 F----G-----GVRCNLKEAVEM-AGLAWQGRAHCGLDDAKNTARLLALLMHRG 277 (374)
Q Consensus 234 ~----~-----~~~~~L~~l~~~-lgI~~~g~~HrALdDA~atA~l~~~ll~~g 277 (374)
+ + .++++|++++++ |||+.. .+|||++||++||+||.++.++.
T Consensus 163 ~~~~~p~~~~~~~~~~L~~l~~~~~gi~~~-~~H~Al~Da~ata~l~~~~~~~~ 215 (242)
T 3mxm_B 163 EQASSPSGNGSRKSYSLGSIYTRLYWQAPT-DSHTAEGDDLTLLSICQWKPQAL 215 (242)
T ss_dssp HHHHCC------CCCSHHHHHHHHHSSCCS-STTSHHHHHHHHHHHHTSSHHHH
T ss_pred HhhcCccccCCCCCcCHHHHHHHHhCCCCC-CCcChHHHHHHHHHHHHHHHHHH
Confidence 4 1 467999999976 999986 58999999999999999877653
No 9
>2f96_A Ribonuclease T; RNAse, RNT, RNAse T, tRNA hydrolase, SAD, PS protein structure initiative, midwest center for structural genomics; 2.09A {Pseudomonas aeruginosa} SCOP: c.55.3.5
Probab=99.98 E-value=1.2e-31 Score=248.59 Aligned_cols=177 Identities=20% Similarity=0.180 Sum_probs=145.6
Q ss_pred ccEEEEEEeeCCCCCCCCCCCceEEEceEEEEcC-CCeE--EEEEEEeecCCCCCCCCcchhhhcCCChH-HHhCCCCHH
Q 017267 96 QYFVVIDFEATCDKDKNPYPQEIIEFPSVIVSSV-TGQL--EACFQTYVRPTCNQLLSDFCKDLTGIQQI-QVDRGVTLS 171 (374)
Q Consensus 96 ~~~VVfDlETTGl~~~~~~~deIIEIGAVkvd~~-~G~i--idsF~~lVkP~~~p~Is~~~~~LTGIt~e-~v~~ap~~~ 171 (374)
..|||||+||||+ ++..++|||||||+++.. +|++ +++|++||+|.....|+++++++||||++ ||++++++.
T Consensus 29 ~~~vviD~ETTGl---~~~~~~IieIg~v~~~~~~~g~i~~~~~f~~lV~P~~~~~i~~~~~~ihGIt~e~~v~~~~~~~ 105 (224)
T 2f96_A 29 YLPVVVDVETGGF---NSATDALLEIAATTVGMDEKGFLFPEHTYFFRIEPFEGANIEPAALEFTGIKLDHPLRMAVQEE 105 (224)
T ss_dssp EEEEEEEEEESSS---CTTTBCEEEEEEEEEEECTTSCEEEEEEEEEEBCCCTTCBCCHHHHHHHTCCTTCTTCCCBCHH
T ss_pred CcEEEEEeeCCCC---CCCCCeeEEEEEEEEEEcCCCcccccceEEEEECCCCCCCCCHHHHHHhCCCHHHHHhcCCCHH
Confidence 4699999999997 466789999999999632 6874 78999999995324699999999999997 589999999
Q ss_pred HHHHHHHHHHhhcC---CCCccEEEEEcCcchHHHHHHHHHHHcCCCCCCC-CCceeehHHHHHHhcCCCCCCHHHHHHH
Q 017267 172 EALLRHDKWLENKG---IKNTNFAVVTWSNWDCRVMLESECRFKKIWKPPY-FNRWINLKVPFHEVFGGVRCNLKEAVEM 247 (374)
Q Consensus 172 eVl~ef~~fl~~~~---l~~~n~~vv~~g~fDl~~fL~~~~~~~gi~~P~~-~~~~iDt~~l~~~~~~~~~~~L~~l~~~ 247 (374)
+|+++|.+|+.... ..+..++|+||+.||+ .||+++|+++|+..+++ ...++||+.+++.+++ +++|..++++
T Consensus 106 ~v~~~~~~~l~~~~~~~~~~~~~lV~hn~~FD~-~fL~~~~~~~g~~~~p~~~~~~iDt~~l~~~~~~--~~~L~~l~~~ 182 (224)
T 2f96_A 106 AALTEIFRGIRKALKANGCKRAILVGHNSSFDL-GFLNAAVARTGIKRNPFHPFSSFDTATLAGLAYG--QTVLAKACQA 182 (224)
T ss_dssp HHHHHHHHHHHHHHHHTTCSEEEEEETTHHHHH-HHHHHHHHHHTCCCCCEEEEEEEEHHHHHHHHHS--CCSHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhcccCCCEEEEeChhhhH-HHHHHHHHHcCCCcCCccccceeeHHHHHHHHcC--CCCHHHHHHH
Confidence 99999999997310 0012345666789997 89999999999874333 3579999999988876 4799999999
Q ss_pred cCCCCCC-CCCcHHHHHHHHHHHHHHHHHccC
Q 017267 248 AGLAWQG-RAHCGLDDAKNTARLLALLMHRGF 278 (374)
Q Consensus 248 lgI~~~g-~~HrALdDA~atA~l~~~ll~~g~ 278 (374)
+|+++++ .+|||++||++||+||.+|+++..
T Consensus 183 ~gi~~~~~~~H~Al~Da~~ta~l~~~l~~~~~ 214 (224)
T 2f96_A 183 AGMEFDNREAHSARYDTEKTAELFCGIVNRWK 214 (224)
T ss_dssp TTCCCCTTSCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCcCCCCCCChHHHHHHHHHHHHHHHHHHH
Confidence 9999753 689999999999999999987644
No 10
>3u3y_B Three prime repair exonuclease 1; RNAse H fold, 3' exonuclease, homodimer, hydrolase-DNA compl; HET: BU1; 2.28A {Mus musculus} PDB: 3u6f_B*
Probab=99.97 E-value=3.8e-32 Score=265.28 Aligned_cols=174 Identities=13% Similarity=0.074 Sum_probs=143.7
Q ss_pred CccEEEEEEeeCCCCCCCCCCCceEEEceEEEEcCC--------C---------eEEEEEEEeecCCCCCCCCcchhhhc
Q 017267 95 FQYFVVIDFEATCDKDKNPYPQEIIEFPSVIVSSVT--------G---------QLEACFQTYVRPTCNQLLSDFCKDLT 157 (374)
Q Consensus 95 ~~~~VVfDlETTGl~~~~~~~deIIEIGAVkvd~~~--------G---------~iidsF~~lVkP~~~p~Is~~~~~LT 157 (374)
..+|||||+||||+ ++..++|||||||+++... | +++++|+++|||.. .|+++++++|
T Consensus 11 ~~tfVv~DlETTGL---~~~~d~IIEIgaV~v~~~~l~~~~~~~g~~~~~~~~~~v~~~~~~lI~P~~--~I~~~a~~Ih 85 (314)
T 3u3y_B 11 MQTLIFLDLEATGL---PSSRPEVTELCLLAVHRRALENTSISQGHPPPVPRPPRVVDKLSLCIAPGK--ACSPGASEIT 85 (314)
T ss_dssp CSEEEEEEEEESSC---GGGCCCEEEEEEEEEEHHHHHC--CCCSSSCCCCCCCSSCEEEEEECBCSS--CCCHHHHHHH
T ss_pred cCCEEEEEEECCCC---CCCCCeEEEEEEEEEECCccccccccccccccccccceeeeeEEEEECCCC--CCCHHHHHhc
Confidence 46899999999997 5677999999999997321 0 47799999999986 5999999999
Q ss_pred CCChHHHhCC--CCH-HHHHHHHHHHHhhcCCCCccEEEEEc-CcchHHHHHHHHHHHcCCCCCCCCCceeehHHHHHHh
Q 017267 158 GIQQIQVDRG--VTL-SEALLRHDKWLENKGIKNTNFAVVTW-SNWDCRVMLESECRFKKIWKPPYFNRWINLKVPFHEV 233 (374)
Q Consensus 158 GIt~e~v~~a--p~~-~eVl~ef~~fl~~~~l~~~n~~vv~~-g~fDl~~fL~~~~~~~gi~~P~~~~~~iDt~~l~~~~ 233 (374)
|||++||.++ |+| +||+++|.+|+++.. ....+|+|| +.||+ .||+++++++|+.+|.....++|+..+++.+
T Consensus 86 GIT~e~l~~aG~P~f~~ev~~~l~~fL~~~~--~~~vLVAHNga~FD~-~FL~~el~r~Gl~~~~~~~~~iDTL~l~r~L 162 (314)
T 3u3y_B 86 GLSKAELEVQGRQRFDDNLAILLRAFLQRQP--QPCCLVAHNGDRYDF-PLLQTELARLSTPSPLDGTFCVDSIAALKAL 162 (314)
T ss_dssp SCCHHHHHHTTCCBSCHHHHHHHHHHHHTSC--SSEEEEETTTTTTHH-HHHHHHHHTSSSCCTTTTCEEEEHHHHHHHH
T ss_pred CCCHHHHHhCCCCCcHHHHHHHHHHHHhcCC--CCcEEEEeCcHHHHH-HHHHHHHHHcCCCCCCCCceEEeHHHHHHHH
Confidence 9999999998 899 799999999999831 112467788 69996 8999999999998753345689998766532
Q ss_pred ----cC-----CCCCCHHHHHHH-cCCCCCCCCCcHHHHHHHHHHHHHHHHHcc
Q 017267 234 ----FG-----GVRCNLKEAVEM-AGLAWQGRAHCGLDDAKNTARLLALLMHRG 277 (374)
Q Consensus 234 ----~~-----~~~~~L~~l~~~-lgI~~~g~~HrALdDA~atA~l~~~ll~~g 277 (374)
++ .++++|++++++ ||++.. ++|||++||++|++||.++.++.
T Consensus 163 ~r~~~P~~~~~~~~~~L~~L~~~l~gi~~~-~aHrAl~DA~ata~lf~~l~~~~ 215 (314)
T 3u3y_B 163 EQASSPSGNGSRKSYSLGSIYTRLYWQAPT-DSHTAEGHVLTLLSICQWKPQAL 215 (314)
T ss_dssp HTTC-------CCCCSHHHHHHHHHSSCCS-CSSSHHHHHHHHHHHHHSSHHHH
T ss_pred HHHhCccccccCCCCCHHHHHHHhcCCCCC-CCCCHHHHHHHHHHHHHHHHHHH
Confidence 22 257999999999 999976 68999999999999999877653
No 11
>1y97_A Three prime repair exonuclease 2; TREX2, hydrolase; 2.50A {Homo sapiens} SCOP: c.55.3.5
Probab=99.97 E-value=6e-31 Score=245.36 Aligned_cols=176 Identities=14% Similarity=0.094 Sum_probs=143.2
Q ss_pred CCccEEEEEEeeCCCCCCCCCCCceEEEceEEEEcC--------------CCeEEEEEEEeecCCCCCCCCcchhhhcCC
Q 017267 94 EFQYFVVIDFEATCDKDKNPYPQEIIEFPSVIVSSV--------------TGQLEACFQTYVRPTCNQLLSDFCKDLTGI 159 (374)
Q Consensus 94 ~~~~~VVfDlETTGl~~~~~~~deIIEIGAVkvd~~--------------~G~iidsF~~lVkP~~~p~Is~~~~~LTGI 159 (374)
....|||||+||||+ ++..++|||||||+++.. .++++++|++||+|.. .|+++++++|||
T Consensus 8 ~~~~~v~iD~ETTGl---~~~~~~IieIg~v~~~~~~~~~~~~~~~~~~~~~~i~~~f~~lv~P~~--~i~~~~~~i~GI 82 (238)
T 1y97_A 8 RAETFVFLDLEATGL---PSVEPEIAELSLFAVHRSSLENPEHDESGALVLPRVLDKLTLCMCPER--PFTAKASEITGL 82 (238)
T ss_dssp CCSEEEEEEEEESSC---GGGCCCEEEEEEEEEEHHHHTSCBC---CCCBCCSSCEEEEEECCCSS--CCCHHHHHHHCC
T ss_pred ccCeEEEEEeeCCCc---CCCCCcEEEEEEEEecccccccccccccccccccccceeeEEEECCCC--cCCHHHHHHhCC
Confidence 446899999999997 456799999999999732 1488899999999986 599999999999
Q ss_pred ChHHH--hCCCCH-HHHHHHHHHHHhhcCCCCccEEEEEcC-cchHHHHHHHHHHHcCCCCCCCCCceeehHHHHHHhc-
Q 017267 160 QQIQV--DRGVTL-SEALLRHDKWLENKGIKNTNFAVVTWS-NWDCRVMLESECRFKKIWKPPYFNRWINLKVPFHEVF- 234 (374)
Q Consensus 160 t~e~v--~~ap~~-~eVl~ef~~fl~~~~l~~~n~~vv~~g-~fDl~~fL~~~~~~~gi~~P~~~~~~iDt~~l~~~~~- 234 (374)
|++|| .++|+| ++|+++|.+|++... +...+|+||+ .||+ .||+++++++|+.+|. ...++||..+++.++
T Consensus 83 t~~~l~~~~~p~f~~~v~~~l~~fl~~~~--~~~~lVahN~~~FD~-~fL~~~~~~~g~~~~~-~~~~iDt~~l~~~~~~ 158 (238)
T 1y97_A 83 SSEGLARCRKAGFDGAVVRTLQAFLSRQA--GPICLVAHNGFDYDF-PLLCAELRRLGARLPR-DTVCLDTLPALRGLDR 158 (238)
T ss_dssp CHHHHHHTTCCCSCHHHHHHHHHHHTTSC--SSEEEEETTTTTTHH-HHHHHHHHHHTCCCCT-TCEEEEHHHHHHHHHH
T ss_pred CHHHHhhcCCCccHHHHHHHHHHHHHhCC--CCCEEEecCchhhhH-HHHHHHHHHcCCCCCC-CCEEEEHHHHHHHHHh
Confidence 99999 578999 599999999998631 1234566778 9996 8999999999988752 247999998888776
Q ss_pred --------C-CCCCCHHHHHH-HcCCCCCCCCCcHHHHHHHHHHHHHHHHHccCc
Q 017267 235 --------G-GVRCNLKEAVE-MAGLAWQGRAHCGLDDAKNTARLLALLMHRGFK 279 (374)
Q Consensus 235 --------~-~~~~~L~~l~~-~lgI~~~g~~HrALdDA~atA~l~~~ll~~g~~ 279 (374)
+ .++++|+++++ +||++.. .+|||++||++|++||.+|+++..+
T Consensus 159 ~~~p~~~~p~~~~~~L~~l~~~~~gi~~~-~~H~Al~Da~~ta~l~~~l~~~~~~ 212 (238)
T 1y97_A 159 AHSHGTRARGRQGYSLGSLFHRYFRAEPS-AAHSAEGDVHTLLLIFLHRAAELLA 212 (238)
T ss_dssp HC----------CCSHHHHHHHHHSSCCC----CHHHHHHHHHHHHHHTHHHHHH
T ss_pred ccCccccCCCCCCCCHHHHHHHHhCCCCc-cCccHHHHHHHHHHHHHHHHHHHHH
Confidence 2 36799999999 5999875 6899999999999999999876543
No 12
>3v9w_A Ribonuclease T; DEDD nucleases family, EXO-nucleases, hydrolase-DNA complex; HET: DNA; 1.70A {Escherichia coli} PDB: 3ngy_A 3v9u_A* 3ngz_A* 3va3_A* 3v9z_A* 3nh0_A 3nh2_A 3nh1_A* 3v9s_A* 3v9x_A* 3va0_A* 2is3_A
Probab=99.97 E-value=1.4e-30 Score=242.81 Aligned_cols=180 Identities=21% Similarity=0.222 Sum_probs=148.8
Q ss_pred ccEEEEEEeeCCCCCCCCCCCceEEEceEEEEc-CCCe--EEEEEEEeecCCCCCCCCcchhhhcCCChH-HHhCCCCHH
Q 017267 96 QYFVVIDFEATCDKDKNPYPQEIIEFPSVIVSS-VTGQ--LEACFQTYVRPTCNQLLSDFCKDLTGIQQI-QVDRGVTLS 171 (374)
Q Consensus 96 ~~~VVfDlETTGl~~~~~~~deIIEIGAVkvd~-~~G~--iidsF~~lVkP~~~p~Is~~~~~LTGIt~e-~v~~ap~~~ 171 (374)
..||+||+||||+ ++..++|||||||+++. .+|+ +.++|++||+|.....++++++++||||++ ||++++++.
T Consensus 37 ~~~vviD~ETTGl---~~~~~~IieIgav~~~~~~~g~i~~~~~f~~~v~P~~~~~i~~~~~~i~GIt~e~~v~~~~~~~ 113 (235)
T 3v9w_A 37 FYPVVIDVETAGF---NAKTDALLEIAAITLKMDEQGWLMPDTTLHFHVEPFVGANLQPEALAFNGIDPNDPDRGAVSGY 113 (235)
T ss_dssp EEEEEEEEEESSS---CTTTBCEEEEEEEEEEECTTSCEEEEEEEEEEBCCCTTCBCCHHHHHHHCCCTTCGGGCCBCHH
T ss_pred CcEEEEEEeCCCC---CCCCCeEEEEEEEEEEEcCCCcccccceEEEEECCCCCCCCCHHHHHHhCCCHHHHHhcCCCHH
Confidence 4799999999997 56789999999999852 2677 479999999995434699999999999999 999999999
Q ss_pred HHHHHHHHHHhhcCC---CCccEEEEEcCcchHHHHHHHHHHHcCCCCCCCC-CceeehHHHHHHhcCCCCCCHHHHHHH
Q 017267 172 EALLRHDKWLENKGI---KNTNFAVVTWSNWDCRVMLESECRFKKIWKPPYF-NRWINLKVPFHEVFGGVRCNLKEAVEM 247 (374)
Q Consensus 172 eVl~ef~~fl~~~~l---~~~n~~vv~~g~fDl~~fL~~~~~~~gi~~P~~~-~~~iDt~~l~~~~~~~~~~~L~~l~~~ 247 (374)
+|+++|.+|+++..- .+...+|+||+.||+ .||+.+++++|+..+++. +.++||+.+++.+++ .++|+.++++
T Consensus 114 ~vl~~~~~~l~~~~~~~~~~~~~lVahN~~fD~-~~L~~~~~~~g~~~~p~~~~~~~Dt~~la~~~~p--~~~L~~l~~~ 190 (235)
T 3v9w_A 114 EALHEIFKVVRKGIKASGCNRAIMVAHNANFDH-SFMMAAAERASLKRNPFHPFATFDTAALAGLALG--QTVLSKACQT 190 (235)
T ss_dssp HHHHHHHHHHHHHHTTTTCCEEEEEETTTHHHH-HHHHHHHHHTTCCCCCEEEEEEEEHHHHHHHHHS--CCSHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhccCCCcEEEEeChHHHH-HHHHHHHHHcCCCCCCCCCCcEEEhHHHHHHHhC--CCCHHHHHHH
Confidence 999999999974110 011245666789997 899999999999763332 478999999988886 4799999999
Q ss_pred cCCCCCC-CCCcHHHHHHHHHHHHHHHHHccCccc
Q 017267 248 AGLAWQG-RAHCGLDDAKNTARLLALLMHRGFKFS 281 (374)
Q Consensus 248 lgI~~~g-~~HrALdDA~atA~l~~~ll~~g~~~~ 281 (374)
||+++++ .+|+|++||++|++||.+|+++..+..
T Consensus 191 ~gi~~~~~~~H~Al~DA~~ta~l~~~l~~~l~~~~ 225 (235)
T 3v9w_A 191 AGMDFDSTQAHSALYDTERTAVLFCEIVNRWKRLG 225 (235)
T ss_dssp HTCCCCTTTTTCHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred cCCCCCCCCCcChHHHHHHHHHHHHHHHHHHHhcC
Confidence 9999864 689999999999999999998765443
No 13
>2igi_A Oligoribonuclease; RNAse, exoribonuclease, exonuclease, hydrolase, mRNA decay; 1.70A {Escherichia coli} SCOP: c.55.3.5 PDB: 1yta_A 1j9a_A
Probab=99.95 E-value=1.1e-28 Score=220.73 Aligned_cols=165 Identities=16% Similarity=0.126 Sum_probs=124.7
Q ss_pred ccEEEEEEeeCCCCCCCCCCCceEEEceEEEEcCCCeEEEE-EEEeecCCCC--CCCCcchh---hhcCCChHHHhCCCC
Q 017267 96 QYFVVIDFEATCDKDKNPYPQEIIEFPSVIVSSVTGQLEAC-FQTYVRPTCN--QLLSDFCK---DLTGIQQIQVDRGVT 169 (374)
Q Consensus 96 ~~~VVfDlETTGl~~~~~~~deIIEIGAVkvd~~~G~iids-F~~lVkP~~~--p~Is~~~~---~LTGIt~e~v~~ap~ 169 (374)
..||+||+||||+ ++..++|||||||+++ .+|+++++ |++||+|... +.++++++ ++||||++||+++|+
T Consensus 5 ~~~v~iD~ETTGl---~~~~~~IieIg~v~~~-~~~~~~~~~~~~lv~P~~~i~~~i~~~~~~~~~itGIt~~~l~~~~~ 80 (180)
T 2igi_A 5 NNLIWIDLEMTGL---DPERDRIIEIATLVTD-ANLNILAEGPTIAVHQSDEQLALMDDWNVRTHTASGLVERVKASTMG 80 (180)
T ss_dssp GCEEEEEEEESSS---CTTTCCEEEEEEEEEC-TTCCEEEEEEEEECCCCHHHHTTCCHHHHHHHHHTTHHHHHHHCCCC
T ss_pred CcEEEEEeeCCCC---CCCCCceEEEEEEEEc-CCCcEecCCcceEECCCHHHhhcCCHHHHHHHHHcCCCHHHHhcCCC
Confidence 5799999999997 4667999999999997 36767664 9999999851 12455664 459999999999999
Q ss_pred HHHHHHHHHHHHhhcCCCCccEEEEEcCcchHHHHHHHHHHHcCCCCCCCCCceee--hH-HHHHHhcCCCCCCHHHHHH
Q 017267 170 LSEALLRHDKWLENKGIKNTNFAVVTWSNWDCRVMLESECRFKKIWKPPYFNRWIN--LK-VPFHEVFGGVRCNLKEAVE 246 (374)
Q Consensus 170 ~~eVl~ef~~fl~~~~l~~~n~~vv~~g~fDl~~fL~~~~~~~gi~~P~~~~~~iD--t~-~l~~~~~~~~~~~L~~l~~ 246 (374)
+++|+++|.+|+++..-.+...+|+||+.||+ .||+.++.+.+.. +.++++| +. .+.+++++. +
T Consensus 81 ~~~v~~~~~~~l~~~~~~~~~~lv~hn~~fD~-~fL~~~~~~~~~~---~~~~~~d~~tl~~l~~~~~p~----~----- 147 (180)
T 2igi_A 81 DREAELATLEFLKQWVPAGKSPICGNSIGQDR-RFLFKYMPELEAY---FHYRYLDVSTLKELARRWKPE----I----- 147 (180)
T ss_dssp HHHHHHHHHHHHTTTSCTTTSCEEESSHHHHH-HHHHHHCHHHHHH---SCSCEEETHHHHHHHHHHCGG----G-----
T ss_pred HHHHHHHHHHHHHHhCCCCCceEEecCHHHHH-HHHHHHHHHhccC---CCcceeeHHHHHHHHHHhChH----h-----
Confidence 99999999999996311111234555679997 8999999887633 2357899 55 356655531 1
Q ss_pred HcCCCCCCCCCcHHHHHHHHHHHHHHHHHccC
Q 017267 247 MAGLAWQGRAHCGLDDAKNTARLLALLMHRGF 278 (374)
Q Consensus 247 ~lgI~~~g~~HrALdDA~atA~l~~~ll~~g~ 278 (374)
..|++.. .+|||++||++||+||.++++...
T Consensus 148 ~~~i~~~-~~H~Al~Da~ata~l~~~~~~~~~ 178 (180)
T 2igi_A 148 LDGFTKQ-GTHQAMDDIRESVAELAYYREHFI 178 (180)
T ss_dssp GGGSCCC-CCCCHHHHHHHHHHHHHHHHHHTB
T ss_pred hhCCCCc-CCcCcHHHHHHHHHHHHHHHHHhh
Confidence 1367654 689999999999999999987643
No 14
>1wlj_A Interferon stimulated gene 20KDA; exoribonuclease, hydrolase; HET: U5P; 1.90A {Homo sapiens} SCOP: c.55.3.5
Probab=99.95 E-value=1.6e-28 Score=222.34 Aligned_cols=157 Identities=17% Similarity=0.195 Sum_probs=125.5
Q ss_pred ccEEEEEEeeCCCCCCCCCC-CceEEEceEEEEcCCCeEEEEEEEeecCCCCCCCCcchhhhcCCChHHHhCCCCHHHHH
Q 017267 96 QYFVVIDFEATCDKDKNPYP-QEIIEFPSVIVSSVTGQLEACFQTYVRPTCNQLLSDFCKDLTGIQQIQVDRGVTLSEAL 174 (374)
Q Consensus 96 ~~~VVfDlETTGl~~~~~~~-deIIEIGAVkvd~~~G~iidsF~~lVkP~~~p~Is~~~~~LTGIt~e~v~~ap~~~eVl 174 (374)
..|||||+||||+ ++.. .+|||||+|.+ +|+++ |++||||.. .|+++++++||||++||+++|+|++|+
T Consensus 5 ~~~vviD~ETTGl---~~~~~~~iiei~~v~~---~g~~i--~~~lV~P~~--~i~~~~~~i~GIt~~~l~~a~~~~~v~ 74 (189)
T 1wlj_A 5 REVVAMDCEMVGL---GPHRESGLARCSLVNV---HGAVL--YDKFIRPEG--EITDYRTRVSGVTPQHMVGATPFAVAR 74 (189)
T ss_dssp -CEEEEEEEEEEE---TTTTEEEEEEEEEECT---TCCEE--EEEEEECSS--CEEECCHHHHCCCHHHHTTCEEHHHHH
T ss_pred CeEEEEEeECcCc---CCCCCceEEEEEEEeC---CCCEE--EeeEecCCC--CCCccccCCCCCCHHHHcCCCCHHHHH
Confidence 4799999999997 3443 58899999753 67776 999999986 499999999999999999999999999
Q ss_pred HHHHHHHhhcCCCCccEEEEEcCcchHHHHHHHHHHHcCCCCCCCCCceeehHHHHH--H--hcC-CCCCCHHHHHHH-c
Q 017267 175 LRHDKWLENKGIKNTNFAVVTWSNWDCRVMLESECRFKKIWKPPYFNRWINLKVPFH--E--VFG-GVRCNLKEAVEM-A 248 (374)
Q Consensus 175 ~ef~~fl~~~~l~~~n~~vv~~g~fDl~~fL~~~~~~~gi~~P~~~~~~iDt~~l~~--~--~~~-~~~~~L~~l~~~-l 248 (374)
++|.+|+++. ++|+||+.||+ .||+.+ +|. ..++||..++. + .++ ..+++|+.++++ |
T Consensus 75 ~~~~~~l~~~------~lV~hn~~fD~-~~L~~~-------~~~--~~~idt~~~~~~~~~~~~p~~~~~~L~~l~~~~l 138 (189)
T 1wlj_A 75 LEILQLLKGK------LVVGHDLKHDF-QALKED-------MSG--YTIYDTSTDRLLWREAKLDHCRRVSLRVLSERLL 138 (189)
T ss_dssp HHHHHHHTTS------EEEESSHHHHH-HHTTCC-------CTT--CEEEEGGGCHHHHHHHTC-----CCHHHHHHHHT
T ss_pred HHHHHHHCCC------EEEECCcHHHH-HHHHHh-------CCC--CceechHhhhhhhhcccCCCCCCccHHHHHHHHc
Confidence 9999999864 35666779997 788643 332 36999976532 2 232 357899999998 8
Q ss_pred CCCCCCC--CCcHHHHHHHHHHHHHHHHHccC
Q 017267 249 GLAWQGR--AHCGLDDAKNTARLLALLMHRGF 278 (374)
Q Consensus 249 gI~~~g~--~HrALdDA~atA~l~~~ll~~g~ 278 (374)
|++..+. +|||++||++|++||.+++++..
T Consensus 139 gi~~~~~~~~H~Al~Da~ata~l~~~l~~~~~ 170 (189)
T 1wlj_A 139 HKSIQNSLLGHSSVEDARATMELYQISQRIRA 170 (189)
T ss_dssp CCCCSCCTTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCcCcHHHHHHHHHHHHHHHHHHH
Confidence 9998643 89999999999999999987644
No 15
>2qxf_A Exodeoxyribonuclease I; alpha-beta domain, DNAQ superfamily, SH3-like domain, produc structure, DNA damage, DNA repair, exonuclease; HET: TMP; 1.50A {Escherichia coli} SCOP: c.55.3.5 PDB: 1fxx_A* 3c94_A 3c95_A 3hl8_A* 3hp9_A*
Probab=99.95 E-value=3.5e-27 Score=242.36 Aligned_cols=170 Identities=14% Similarity=0.078 Sum_probs=137.0
Q ss_pred ccEEEEEEeeCCCCCCCCCCCceEEEceEEEEcCCCeEEEE-EEEeecCCCCCCC--CcchhhhcCCChHHHhCCCC-HH
Q 017267 96 QYFVVIDFEATCDKDKNPYPQEIIEFPSVIVSSVTGQLEAC-FQTYVRPTCNQLL--SDFCKDLTGIQQIQVDRGVT-LS 171 (374)
Q Consensus 96 ~~~VVfDlETTGl~~~~~~~deIIEIGAVkvd~~~G~iids-F~~lVkP~~~p~I--s~~~~~LTGIt~e~v~~ap~-~~ 171 (374)
..|||||+||||+ ++..++|||||||+++ .+|+++++ |++||+|.. + + ++.++++||||++||.+++. +.
T Consensus 9 ~~~vv~DlETTGl---~p~~d~IIEIgaV~vd-~~g~ii~~~f~~lVkP~~-~-ilp~p~a~~IhGIT~e~l~~ap~~~~ 82 (482)
T 2qxf_A 9 STFLFHDYETFGT---HPALDRPAQFAAIRTD-SEFNVIGEPEVFYCKPAD-D-YLPQPGAVLITGITPQEARAKGENEA 82 (482)
T ss_dssp CEEEEEEEEESSS---CTTTSCEEEEEEEEEC-TTSCBCSCCEEEEBCCCT-T-CCCCHHHHHHHCCCHHHHHHHCBCHH
T ss_pred CCEEEEEEECCCC---CCCCCeEEEEEEEEEE-CCCeEEeeeeEEEECCCC-C-CCCCHHHHHHhCCCHHHHhcCCCCHH
Confidence 4799999999997 5667999999999997 47888887 999999986 3 4 67889999999999997554 59
Q ss_pred HHHHHHHHHHhhcCCCCccEEEEEc-CcchHHHHHHHHHHHcCCCCCC--C--CCceeehHHHHHHhc------------
Q 017267 172 EALLRHDKWLENKGIKNTNFAVVTW-SNWDCRVMLESECRFKKIWKPP--Y--FNRWINLKVPFHEVF------------ 234 (374)
Q Consensus 172 eVl~ef~~fl~~~~l~~~n~~vv~~-g~fDl~~fL~~~~~~~gi~~P~--~--~~~~iDt~~l~~~~~------------ 234 (374)
+|+.+|.+|++.. ..++|+|| ..||+ .||+.+|.++|+.... + .+.++||..+++.++
T Consensus 83 evl~~f~~~l~~~----~~~lVaHNs~~FD~-~fL~~~~~r~g~~~~~~~w~~~~~~iDtl~l~r~~~~~~~~~~~wP~~ 157 (482)
T 2qxf_A 83 AFAARIHSLFTVP----KTCILGYNNVRFDD-EVTRNIFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPEN 157 (482)
T ss_dssp HHHHHHHHHHTST----TEEEEESSTTTTHH-HHHHHHHHHTTSCSSGGGTGGGCEEEEHHHHHHHHHHHCCTTSCCCBC
T ss_pred HHHHHHHHHHcCC----CCEEEEECCHHHHH-HHHHHHHHHhCCCccccccccCCceeeHHHHHHHHHHhCcccccCccc
Confidence 9999999999821 12345566 59996 8999999999886321 1 157889988887654
Q ss_pred --CCCCCCHHHHHHHcCCCCCCCCCcHHHHHHHHHHHHHHHHHcc
Q 017267 235 --GGVRCNLKEAVEMAGLAWQGRAHCGLDDAKNTARLLALLMHRG 277 (374)
Q Consensus 235 --~~~~~~L~~l~~~lgI~~~g~~HrALdDA~atA~l~~~ll~~g 277 (374)
+..+++|+.+++++||+.. .+|+|++||++|++||.+|.++.
T Consensus 158 ~~~~~s~kL~~L~~~~Gi~~~-~aHrAL~DA~aTa~l~~~l~~~~ 201 (482)
T 2qxf_A 158 DDGLPSFRLEHLTKANGIEHS-NAHDAMADVYATIAMAKLVKTRQ 201 (482)
T ss_dssp TTSSBCCCHHHHHHHTTCCCC----CTTHHHHHHHHHHHHHHHHS
T ss_pred ccCCCCCCHHHHHHHcCCCCC-CCCCHHHHHHHHHHHHHHHHHhC
Confidence 3347899999999999975 68999999999999999988653
No 16
>2gbz_A Oligoribonuclease; ORN, deddh, structural genomics, hydrolase; 2.30A {Xanthomonas campestris PV}
Probab=99.94 E-value=1.7e-27 Score=216.73 Aligned_cols=164 Identities=15% Similarity=0.120 Sum_probs=123.4
Q ss_pred ccEEEEEEeeCCCCCCCCCCCceEEEceEEEEcCCC-eEEEEEEEeecCCCCC---CCCcchhhh---cCCChHHHhCCC
Q 017267 96 QYFVVIDFEATCDKDKNPYPQEIIEFPSVIVSSVTG-QLEACFQTYVRPTCNQ---LLSDFCKDL---TGIQQIQVDRGV 168 (374)
Q Consensus 96 ~~~VVfDlETTGl~~~~~~~deIIEIGAVkvd~~~G-~iidsF~~lVkP~~~p---~Is~~~~~L---TGIt~e~v~~ap 168 (374)
..|||||+||||+ ++..++|||||||+.++ ++ .+.++|+++|+|.. + .+++++.++ ||||++||.++|
T Consensus 9 ~~~vviD~ETTGl---~p~~d~IieIgav~~~~-~~~~~~~~~~~~v~p~~-~i~~~~~~~~~~~~~itGIt~~~l~~~p 83 (194)
T 2gbz_A 9 DRLIWIDLEMTGL---DTDRDSIIEIATIVTDA-QLNVLAEGPELAIAHSL-ETLEAMDEWNRNQHRRSGLWQRVLDSQV 83 (194)
T ss_dssp CEEEEEEEEESCS---CTTTCCEEEEEEEEEET-TCCEEEECCCEECCCCH-HHHHTSCSHHHHHHHHHTHHHHHHHCCC
T ss_pred CCEEEEEeECCCC---CCCCCccEEEEEEEEcC-CcceeccCceEEEeCCH-HHhhccchHHHHHHHhhCCCHHHHhcCC
Confidence 5799999999997 56789999999999763 34 34568999999985 2 125555555 999999999999
Q ss_pred CHHHHHHHHHHHHhhcCCCCccEEEEEcCcchHHHHHHHHHHHcCCCCCCCCCceeehHHH---HHHhcCCCCCCHHHHH
Q 017267 169 TLSEALLRHDKWLENKGIKNTNFAVVTWSNWDCRVMLESECRFKKIWKPPYFNRWINLKVP---FHEVFGGVRCNLKEAV 245 (374)
Q Consensus 169 ~~~eVl~ef~~fl~~~~l~~~n~~vv~~g~fDl~~fL~~~~~~~gi~~P~~~~~~iDt~~l---~~~~~~~~~~~L~~l~ 245 (374)
++++|+++|.+|+++..-.+...+|+||+.||+ .||++++.+.+.. +.++++|+..+ .+++++. ++
T Consensus 84 ~~~ev~~~~~~~l~~~~~~~~~~lvghn~~FD~-~fL~~~~~~~~~~---~~~~~~d~~~l~~l~~~~~p~-------~~ 152 (194)
T 2gbz_A 84 THAQAEAQTVAFLGEWIRAGASPMCGNSICQDR-RFLHRQMSRLERY---FHYRNLDVSTIKELARRWAPA-------VA 152 (194)
T ss_dssp CHHHHHHHHHHHHTTTCCTTSSCEEESSHHHHH-HHHHHHCHHHHHH---SCSCEEEHHHHHHHHHHHCGG-------GG
T ss_pred CHHHHHHHHHHHHHHhCCCCCceEEecCHHHhH-HHHHHHHHHhccc---CCCccccHHHHHHHHHHhCHH-------HH
Confidence 999999999999998642222235667789996 8999999887632 23578897643 3333221 22
Q ss_pred HHcCCCCCCCCCcHHHHHHHHHHHHHHHHHccC
Q 017267 246 EMAGLAWQGRAHCGLDDAKNTARLLALLMHRGF 278 (374)
Q Consensus 246 ~~lgI~~~g~~HrALdDA~atA~l~~~ll~~g~ 278 (374)
+ +++.. .+|||++||++|+++|.++.+...
T Consensus 153 ~--~i~~~-~~H~Al~Da~ata~ll~~~~~~~~ 182 (194)
T 2gbz_A 153 S--GFAKS-SAHTALSDVRDSIDELRHYRQFMG 182 (194)
T ss_dssp T--TCCCC-SCCSHHHHHHHHHHHHHHHHTTSH
T ss_pred h--CCCCC-CCcccHHHHHHHHHHHHHHHHHhc
Confidence 2 36543 689999999999999999887654
No 17
>3tr8_A Oligoribonuclease; transcription, hydrolase; 2.50A {Coxiella burnetii}
Probab=99.94 E-value=9.3e-27 Score=211.77 Aligned_cols=165 Identities=14% Similarity=0.053 Sum_probs=122.9
Q ss_pred ccEEEEEEeeCCCCCCCCCCCceEEEceEEEEcCCCeEEEEE-EEeec-CCCC-CCCCc---chhhhcCCChHHHhCCCC
Q 017267 96 QYFVVIDFEATCDKDKNPYPQEIIEFPSVIVSSVTGQLEACF-QTYVR-PTCN-QLLSD---FCKDLTGIQQIQVDRGVT 169 (374)
Q Consensus 96 ~~~VVfDlETTGl~~~~~~~deIIEIGAVkvd~~~G~iidsF-~~lVk-P~~~-p~Is~---~~~~LTGIt~e~v~~ap~ 169 (374)
..||+||+||||+ ++..|+|||||||++| .++++++++ +.+|+ |... ..+++ .+..+||||++||+++|+
T Consensus 9 ~~~v~~D~ETTGL---~p~~d~IiEIgaV~~d-~~~~i~~~~~~~~i~~p~~~l~~~~~~~~~ih~ltGIt~~~l~~~p~ 84 (186)
T 3tr8_A 9 DNLIWLDLEMTGL---DPERDRIIEIATIVTN-SHLDILAEGPAFAIHQPDKLLTAMDNWNTSHHTASGLLERVKNSSVD 84 (186)
T ss_dssp TCEEEEEEEESSS---CTTTCCEEEEEEEEEC-TTCCEEEECCCEECCCCHHHHTTSCHHHHHHHHHTSHHHHHHTCCCC
T ss_pred CcEEEEEEECCCC---CCCCCceEEEEEEEEc-CCeEEeeeeEEEEEeCCccccccCCcccHHHHhccCCCHHHHhcCCC
Confidence 5799999999997 6778999999999765 345777775 55686 5410 11344 455678999999999999
Q ss_pred HHHHHHHHHHHHhhcCCCCccEEEEEcCcchHHHHHHHHHHHcCCCCCCCCCceee--hHH-HHHHhcCCCCCCHHHHHH
Q 017267 170 LSEALLRHDKWLENKGIKNTNFAVVTWSNWDCRVMLESECRFKKIWKPPYFNRWIN--LKV-PFHEVFGGVRCNLKEAVE 246 (374)
Q Consensus 170 ~~eVl~ef~~fl~~~~l~~~n~~vv~~g~fDl~~fL~~~~~~~gi~~P~~~~~~iD--t~~-l~~~~~~~~~~~L~~l~~ 246 (374)
+++|+++|++|+.+..-.+...+++||+.||+ .||++++.+.|..+ .++++| |.. +.+++++. +.
T Consensus 85 ~~ev~~~~l~fl~~~~~~~~~~lvghn~~FD~-~FL~~~~~~~~~~~---~~~~iDvsTl~elar~~~P~----~~---- 152 (186)
T 3tr8_A 85 EVEAETLTLAFLEKYVSAGKSPLCGNSVCQDR-RFLSRYMPRLNQFF---HYRHLDVTTLKILAQRWAPQ----IA---- 152 (186)
T ss_dssp HHHHHHHHHHHHTTTSCTTCSCEEESSTHHHH-HHHHHHCHHHHHHS---CSCEEEHHHHHHHHHHHCHH----HH----
T ss_pred HHHHHHHHHHHHHHhccCCCcEEEEEcHHHhH-HHHHHHHHHcCCCC---CCcEEeHHHHHHHHHHHCcc----cc----
Confidence 99999999999943221112234566789996 99999998877543 468999 665 77877752 21
Q ss_pred HcCCCCCCCCCcHHHHHHHHHHHHHHHHHccC
Q 017267 247 MAGLAWQGRAHCGLDDAKNTARLLALLMHRGF 278 (374)
Q Consensus 247 ~lgI~~~g~~HrALdDA~atA~l~~~ll~~g~ 278 (374)
-+++.. .+|||++||++|..++....+...
T Consensus 153 -~~~~~~-~~HrAl~Da~ati~~l~~y~~~~~ 182 (186)
T 3tr8_A 153 -AAHIKE-SQHLALQDIRDSIEELRYYRAHLL 182 (186)
T ss_dssp -TTSCCC-CCSCHHHHHHHHHHHHHHHHHHTB
T ss_pred -ccCCCC-CCcChHHHHHHHHHHHHHHHHHhh
Confidence 167654 689999999999999998776543
No 18
>4hec_A Putative uncharacterized protein; ssgcid, structural genomics, SEA structural genomics center for infectious disease, unknown; 1.80A {Mycobacterium tuberculosis}
Probab=98.94 E-value=5.8e-09 Score=94.80 Aligned_cols=154 Identities=16% Similarity=0.152 Sum_probs=96.1
Q ss_pred ccEEEEEEeeCCCCCCCCCCCceEEEceEEEEcCCCeEEEEEEEeecCCCCCCCCcchhh--hcCCChHHHhCCCCHHHH
Q 017267 96 QYFVVIDFEATCDKDKNPYPQEIIEFPSVIVSSVTGQLEACFQTYVRPTCNQLLSDFCKD--LTGIQQIQVDRGVTLSEA 173 (374)
Q Consensus 96 ~~~VVfDlETTGl~~~~~~~deIIEIGAVkvd~~~G~iidsF~~lVkP~~~p~Is~~~~~--LTGIt~e~v~~ap~~~eV 173 (374)
..-+++|+|+|+. ....++|+||+|- ++|+ +|+..+..-.....+++..+ +.++.+.......+++++
T Consensus 22 m~r~FlDTEFt~d----~~~~eLISIGlV~---EdGr---EFYav~~d~d~~~~~~wVr~~Vlp~L~~~~~~~~~s~~~i 91 (190)
T 4hec_A 22 MVRYFYDTEFIED----GHTIELISIGVVA---EDGR---EYYAVSTEFDPERAGSWVRTHVLPKLPPPASQLWRSRQQI 91 (190)
T ss_dssp EEEEEEEEEEEEC----SSCEEEEEEEEEE---TTSC---EEEEEETTSCGGGCCHHHHHHTGGGSCCTTSTTEECHHHH
T ss_pred eeEEEEeeeecCC----CCCCCEEEEEEEc---CCCC---EEEEEecCCChhhCcHHHHhccccCCCCCcccccCCHHHH
Confidence 3468899999973 3567999999984 5775 57776653211236777655 577776556667799999
Q ss_pred HHHHHHHHhhcCCCCccEEEEEc-CcchHHHHHHHHHHHcCCCCCC-CCCceeehHHHHHHhcCCCCCCHHHHHHHcCCC
Q 017267 174 LLRHDKWLENKGIKNTNFAVVTW-SNWDCRVMLESECRFKKIWKPP-YFNRWINLKVPFHEVFGGVRCNLKEAVEMAGLA 251 (374)
Q Consensus 174 l~ef~~fl~~~~l~~~n~~vv~~-g~fDl~~fL~~~~~~~gi~~P~-~~~~~iDt~~l~~~~~~~~~~~L~~l~~~lgI~ 251 (374)
..+|.+|+.... +....|++| +.||. .+|...+...+ ..|. +.....|++.++... +. ..++
T Consensus 92 ~~~L~~FL~~~~--~~~~eLwa~~~~yD~-~~L~ql~g~m~-~lP~~~p~~~~dlr~~~~~~-g~-----------~~lp 155 (190)
T 4hec_A 92 RLDLEEFLRIDG--TDSIELWAWVGAYDH-VALCQLWGPMT-ALPPTVPRFTRELRQLWEDR-GC-----------PRMP 155 (190)
T ss_dssp HHHHHHHTTTTS--SCEEEEEESSCHHHH-HHHHTTTSSGG-GSCTTSCSSCEEHHHHHHHT-TC-----------CCCC
T ss_pred HHHHHHHHHhcC--CCCCEEEEecccccH-HHHHHHhcccc-cCCcccchhhHHHHHHHHHc-CC-----------CCCC
Confidence 999999997542 223345565 68995 77765432211 1221 222235666555321 11 1222
Q ss_pred -CCCCCCcHHHHHHHHHHHHHHHHH
Q 017267 252 -WQGRAHCGLDDAKNTARLLALLMH 275 (374)
Q Consensus 252 -~~g~~HrALdDA~atA~l~~~ll~ 275 (374)
..+.+|+||.||+..+..|..|..
T Consensus 156 ~~~~~~H~AL~DAR~n~~~~~~~~~ 180 (190)
T 4hec_A 156 PRPRDVHDALVDARDQLRRFRLITS 180 (190)
T ss_dssp C-----CCHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCcCcHHHHHHHHHHHHHHhC
Confidence 234579999999999999988753
No 19
>2kfn_A Klenow fragment of DNA polymerase I; complex (polymerase/DNA), exonuclease, transferase, transferase/DNA complex; HET: US1; 2.03A {Escherichia coli} SCOP: c.55.3.5 e.8.1.1 PDB: 1d9f_A* 1d9d_A* 1krp_A* 1ksp_A* 1qsl_A* 1kfs_A* 2kfz_A* 2kzm_A* 2kzz_A* 1dpi_A* 1kfd_A* 1kln_A* 1d8y_A*
Probab=98.80 E-value=6.8e-08 Score=101.67 Aligned_cols=146 Identities=16% Similarity=0.121 Sum_probs=103.7
Q ss_pred cEEEEEEeeCCCCCCCCCCCceEEEceEEEEcCCCeEEEEEEEeecCCCCCCCCcchhhhcCCChHHHhCCCCHHHHHHH
Q 017267 97 YFVVIDFEATCDKDKNPYPQEIIEFPSVIVSSVTGQLEACFQTYVRPTCNQLLSDFCKDLTGIQQIQVDRGVTLSEALLR 176 (374)
Q Consensus 97 ~~VVfDlETTGl~~~~~~~deIIEIGAVkvd~~~G~iidsF~~lVkP~~~p~Is~~~~~LTGIt~e~v~~ap~~~eVl~e 176 (374)
.+|+||+||||+ ++..++|++|+++. .+|+. .|| |..+. . + | +.++++++++++.
T Consensus 27 ~~va~DtEttgl---~~~~~~iv~I~~~~---~~g~~-----~yi-p~~~~----~---~-~-----~~~~l~~~~vl~~ 81 (605)
T 2kfn_A 27 PVFAFDTETDSL---DNISANLVGLSFAI---EPGVA-----AYI-PVAHD----Y---L-D-----APDQISRERALEL 81 (605)
T ss_dssp SSEEEEEEESCS---CTTTCCEEEEEEEE---ETTEE-----EEE-ECCCC----S---T-T-----CCCCCCHHHHHHH
T ss_pred CeEEEEEecCCC---CcccCceEEEEEEE---cCCcE-----EEE-ecccc----c---c-c-----cccccCHHHHHHH
Confidence 579999999996 45678999999884 25653 355 32111 0 1 2 1346678999999
Q ss_pred HHHHHhhcCCCCccEEEEEcCcchHHHHHHHHHHHcCCCCCCCCCceeehHHHHHHhcC-CCCCCHHHHHHHc-CCCCC-
Q 017267 177 HDKWLENKGIKNTNFAVVTWSNWDCRVMLESECRFKKIWKPPYFNRWINLKVPFHEVFG-GVRCNLKEAVEMA-GLAWQ- 253 (374)
Q Consensus 177 f~~fl~~~~l~~~n~~vv~~g~fDl~~fL~~~~~~~gi~~P~~~~~~iDt~~l~~~~~~-~~~~~L~~l~~~l-gI~~~- 253 (374)
|.+|+++..+ ..|+||+.||+ .+|.+ +|+..+ ..++||......+.+ ..+++|+.++++| |+...
T Consensus 82 L~~~L~d~~i----~kV~hnak~D~-~~L~~----~Gi~l~---~~~~DT~laayLL~p~~~~~~L~~La~~~Lg~~~i~ 149 (605)
T 2kfn_A 82 LKPLLEDEKA----LKVGQNLKYDR-GILAN----YGIELR---GIAFDTMLESYILNSVAGRHDMDSLAERWLKHKTIT 149 (605)
T ss_dssp HHHHHTCTTS----CEEESSHHHHH-HHHHT----TTCCCC---CEEEEHHHHHHHHCTTSSCCSHHHHHHHHSCCCCCC
T ss_pred HHHHHcCCCC----eEEEECcHHHH-HHHHH----CCCCCC---CccccHHHHHHHhCCCCCCCCHHHHHHHhcCCCccc
Confidence 9999998532 25778889997 77763 687653 468999866655544 3479999999988 76521
Q ss_pred -------CC-------------CCcHHHHHHHHHHHHHHHHHccCc
Q 017267 254 -------GR-------------AHCGLDDAKNTARLLALLMHRGFK 279 (374)
Q Consensus 254 -------g~-------------~HrALdDA~atA~l~~~ll~~g~~ 279 (374)
+. .|.|..||.+|++|+.+|.++..+
T Consensus 150 ~~~~~gKg~~~~~~~~~~le~~~~yAa~Da~~~~~L~~~L~~~L~~ 195 (605)
T 2kfn_A 150 FEEIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQLHLKMWPDLQK 195 (605)
T ss_dssp HHHHHCSSTTCCCGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHhCCCcccCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 10 267999999999999988766544
No 20
>4gmj_B CCR4-NOT transcription complex subunit 7; mRNA decay, deadenylase, RNA bindin; HET: GOL; 2.70A {Homo sapiens}
Probab=98.72 E-value=5.3e-07 Score=86.67 Aligned_cols=171 Identities=18% Similarity=0.165 Sum_probs=119.6
Q ss_pred cEEEEEEeeCCCCCCCC-------------------CCCceEEEceEEEEcCCCe-----EEEEEEEeecCCCCCCCCcc
Q 017267 97 YFVVIDFEATCDKDKNP-------------------YPQEIIEFPSVIVSSVTGQ-----LEACFQTYVRPTCNQLLSDF 152 (374)
Q Consensus 97 ~~VVfDlETTGl~~~~~-------------------~~deIIEIGAVkvd~~~G~-----iidsF~~lVkP~~~p~Is~~ 152 (374)
.||++|+|.||.-. .| ..-.||+||...++ .+|+ ..-.|...+.|... ...+.
T Consensus 35 ~fVAiDtEFpGvv~-rp~~~~~~t~d~~Y~~lr~nvd~l~iIQlGLt~f~-~~g~~p~~~~~wqFNF~f~~~~d-~~~~~ 111 (285)
T 4gmj_B 35 NYVAMDTEFPGVVA-RPIGEFRSNADYQYQLLRCNVDLLKIIQLGLTFMN-EQGEYPPGTSTWQFNFKFNLTED-MYAQD 111 (285)
T ss_dssp CEEEEEEECCCCCC-CCTTCCTTSTTHHHHHHHHHHTTSCCCEEEEEEEC-TTSCCCSSCCEEEEEBCCCTTTS-CCCHH
T ss_pred CEEEEEEEecCccC-CCCCccCCCHHHHHHHHHHHHHhhcceeEEEEeec-cCCCcCCCeeEEEEEEEeccccc-cccHH
Confidence 69999999999732 11 11259999999997 4554 35578888888753 35666
Q ss_pred hhhh---cCCChHHHh-CCCCHHHHHHHHHHHHhhcCCC-CccEEE-EEcCcchHHHHHHHHHHHcCCCCCC--------
Q 017267 153 CKDL---TGIQQIQVD-RGVTLSEALLRHDKWLENKGIK-NTNFAV-VTWSNWDCRVMLESECRFKKIWKPP-------- 218 (374)
Q Consensus 153 ~~~L---TGIt~e~v~-~ap~~~eVl~ef~~fl~~~~l~-~~n~~v-v~~g~fDl~~fL~~~~~~~gi~~P~-------- 218 (374)
+.++ +||+-.... .+.+..+ |.+.+....++ ..+..+ ++|+.+|+ .||-+.+.... +|.
T Consensus 112 SI~fL~~~G~DF~k~~~~GI~~~~----f~ell~~sglvl~~~v~WvtfH~~yDf-~yL~k~lt~~~--LP~~~~eF~~~ 184 (285)
T 4gmj_B 112 SIELLTTSGIQFKKHEEEGIETQY----FAELLMTSGVVLCEGVKWLSFHSGYDF-GYLIKILTNSN--LPEEELDFFEI 184 (285)
T ss_dssp HHHHHHHHTCCHHHHHHHCBCHHH----HHHHHHTSSSSSCTTCEEEESSCHHHH-HHHHHHHHTSC--CCSSHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHcCCCHHH----HHHHHHHhHHHhcCCCceEEecchhhH-HHHHHHHhCCC--CCCCHHHHHHH
Confidence 6665 799877764 6777754 44555555443 233344 44788998 88887765333 342
Q ss_pred ---CCCceeehHHHHHHhcCCCCCCHHHHHHHcCCCCCCCCCcHHHHHHHHHHHHHHHHHccC
Q 017267 219 ---YFNRWINLKVPFHEVFGGVRCNLKEAVEMAGLAWQGRAHCGLDDAKNTARLLALLMHRGF 278 (374)
Q Consensus 219 ---~~~~~iDt~~l~~~~~~~~~~~L~~l~~~lgI~~~g~~HrALdDA~atA~l~~~ll~~g~ 278 (374)
++..++|++.+.+..-+ .+.+|+.+++.|+++..|..|.|-.||..|+.+|.+|.+.-.
T Consensus 185 l~~~FP~vYD~K~l~~~~~~-l~ggL~~lA~~L~v~r~g~~HqAGsDSllT~~~F~kl~~~~f 246 (285)
T 4gmj_B 185 LRLFFPVIYDVKYLMKSCKN-LKGGLQEVAEQLELERIGPQHQAGSDSLLTGMAFFKMREMFF 246 (285)
T ss_dssp HHHHCSCEEEHHHHGGGSTT-CCSCHHHHHHHTTCCCCSCTTSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHCchhhhHHHHHHhccc-cCChHHHHHHhCCCCCCCCCCcchhHHHHHHHHHHHHHHHHh
Confidence 12357788766654323 245899999999999888899999999999999999987654
No 21
>1x9m_A DNA polymerase; DNA ploymerase, N-2-acetylaminofluorene, replication block, mutagenesis, transferase/electron transport/DNA complex; HET: DNA 2DT 8FG; 2.10A {Enterobacteria phage T7} SCOP: c.55.3.5 e.8.1.1 PDB: 1skr_A* 1skw_A* 1sl0_A* 1sks_A* 1sl2_A* 1t7p_A* 1t8e_A* 1tk0_A* 1tk5_A* 1tk8_A* 1tkd_A* 1sl1_A* 1x9s_A* 1x9w_A* 1zyq_A* 2ajq_A*
Probab=98.50 E-value=4e-07 Score=97.36 Aligned_cols=141 Identities=17% Similarity=0.144 Sum_probs=91.6
Q ss_pred EEEEEEeeCCCCCCCCCCCceEEEceEEEEcCCCeEEEEEEEeecCCCCCCCCcchhhhcCCChHHHhCCCCHHHHHHHH
Q 017267 98 FVVIDFEATCDKDKNPYPQEIIEFPSVIVSSVTGQLEACFQTYVRPTCNQLLSDFCKDLTGIQQIQVDRGVTLSEALLRH 177 (374)
Q Consensus 98 ~VVfDlETTGl~~~~~~~deIIEIGAVkvd~~~G~iidsF~~lVkP~~~p~Is~~~~~LTGIt~e~v~~ap~~~eVl~ef 177 (374)
+||||+||||+ ++..++|..|.+ .+..++++. .+.|. .+++++..|
T Consensus 1 ~vv~D~ETtGl---~~~~d~i~~iqi--~~~~~~~~~-----~~~p~------------------------~i~~~l~~L 46 (698)
T 1x9m_A 1 MIVSDIEANAL---LESVTKFHCGVI--YDYSTAEYV-----SYRPS------------------------DFGAYLDAL 46 (698)
T ss_dssp CEEEEEEESSC---GGGCCCEEEEEE--EETTTTEEE-----EECGG------------------------GHHHHHHHH
T ss_pred CEEEEcCCCCc---CCCCCEEEEEEE--EecCCCcEE-----EEChH------------------------HHHHHHHHH
Confidence 58999999997 566778776633 343334431 22222 234567888
Q ss_pred HHHHhhcCCCCccEEEEEcC-cchHHHHHHHHHHH---cCCCCCCCCCceeehHHHHHHhcC-CCCCCHHHHHHHc----
Q 017267 178 DKWLENKGIKNTNFAVVTWS-NWDCRVMLESECRF---KKIWKPPYFNRWINLKVPFHEVFG-GVRCNLKEAVEMA---- 248 (374)
Q Consensus 178 ~~fl~~~~l~~~n~~vv~~g-~fDl~~fL~~~~~~---~gi~~P~~~~~~iDt~~l~~~~~~-~~~~~L~~l~~~l---- 248 (374)
.+|+. ... ..|+||+ .||+ .+|...+++ .|+..++ ..++||....+.+.+ ..+++|+.+++.|
T Consensus 47 ~~~l~-~~~----~kV~HNa~kfD~-~~L~~~~~~~~~~Gi~l~~--~~~~DTmlaayLL~p~~~~~~L~~La~~~L~~s 118 (698)
T 1x9m_A 47 EAEVA-RGG----LIVFHNGHKYDV-PALTKLAKLQLNREFHLPR--ENCIDTLVLSRLIHSNLKDTDMGLLRSGKLPGA 118 (698)
T ss_dssp HHHHH-TTC----CEEESSTTTTHH-HHHHHHHHHHHCCCCCCCG--GGEEEHHHHHHHHTTTSCCCTTTTSCGGGSCSC
T ss_pred HHHHh-cCC----eEEEcCChHHHH-HHHHHhhhhcccCCccCCC--CcchhHHHHHHHhCCCCCCCCHHHHHHHHcccc
Confidence 88886 321 2578898 9997 888876543 3776531 469999866655544 3467777776655
Q ss_pred ----CC-------CC----------CC---C------------CCcHHHHHHHHHHHHHHHHHccCcc
Q 017267 249 ----GL-------AW----------QG---R------------AHCGLDDAKNTARLLALLMHRGFKF 280 (374)
Q Consensus 249 ----gI-------~~----------~g---~------------~HrALdDA~atA~l~~~ll~~g~~~ 280 (374)
|. ++ .| + .|.|..||.+|.+|+..|..+..+.
T Consensus 119 L~~~g~~lg~~Ki~~~~~~g~~~~~kg~~~~~~~~~~~~~~~~~~YA~~Da~~t~~L~~~L~~~L~~~ 186 (698)
T 1x9m_A 119 LEAWGYRLGEMKGEYKDDFKRMLEEQGEEYVDGMEWWNFNEEMMDYNVQDVVVTKALLEKLLSDKHYF 186 (698)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHTTCCCCTTGGGTSCCHHHHHHHHHHHHHHHHHHHHHHTCTTTS
T ss_pred hhhhcccccccccCHHHHhCcccccccccccccCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 31 10 01 0 4789999999999999998876544
No 22
>2d5r_A CCR4-NOT transcription complex subunit 7; poly(A) deadenylase, antiproliferative protein, transcription; 2.50A {Homo sapiens} SCOP: c.55.3.9
Probab=98.49 E-value=8.6e-06 Score=76.96 Aligned_cols=174 Identities=17% Similarity=0.139 Sum_probs=121.0
Q ss_pred ccEEEEEEeeCCCCCCC--C----------------CCCceEEEceEEEEcCCCeE-----EEEEEEeecCCCCCCCCcc
Q 017267 96 QYFVVIDFEATCDKDKN--P----------------YPQEIIEFPSVIVSSVTGQL-----EACFQTYVRPTCNQLLSDF 152 (374)
Q Consensus 96 ~~~VVfDlETTGl~~~~--~----------------~~deIIEIGAVkvd~~~G~i-----idsF~~lVkP~~~p~Is~~ 152 (374)
-.||++|+|.+|..... . ..-.||++|....| .+|+. .-.|+....... ...++.
T Consensus 24 ~~fvAmDtEFpGvv~rp~g~f~~~~~~~Y~~lr~nVd~l~iIQlGlt~~~-~~g~~p~~~~~wqFNF~F~~~~-d~~~~~ 101 (252)
T 2d5r_A 24 YNYVAMDTEFPGVVARPIGEFRSNADYQYQLLRCNVDLLKIIQLGLTFMN-EQGEYPPGTSTWQFNFKFNLTE-DMYAQD 101 (252)
T ss_dssp CCEEEEEEECCCCCCCCCSCCSSHHHHHHHHHHHHHTTCCCCEEEEEEEC-TTSCCCSSCCEEEEEBCCCTTT-SCCCHH
T ss_pred CCEEEEEeeecceecccCCCCCCCHHHHHHHHHHhhhhcceeEEEEEEEc-cCCCCCCCceeEEEEEEECCcc-cccCHH
Confidence 36999999999984211 0 12479999999998 56664 456777755543 235555
Q ss_pred hhhh---cCCChHHHh-CCCCHHHHHHHHHHHHhhcCCC-CccEEEEE-cCcchHHHHHHHHHHHcCCCCCC--------
Q 017267 153 CKDL---TGIQQIQVD-RGVTLSEALLRHDKWLENKGIK-NTNFAVVT-WSNWDCRVMLESECRFKKIWKPP-------- 218 (374)
Q Consensus 153 ~~~L---TGIt~e~v~-~ap~~~eVl~ef~~fl~~~~l~-~~n~~vv~-~g~fDl~~fL~~~~~~~gi~~P~-------- 218 (374)
+.++ +||+-+... .+.+..+ |.+.+-.++++ ..++.+++ ++.+|+ ++|-+-+.. -++|.
T Consensus 102 Si~fL~~~G~DF~k~~~~GI~~~~----F~ell~~sglvl~~~v~Witfhg~yDf-~yL~k~L~~--~~LP~~~~~F~~~ 174 (252)
T 2d5r_A 102 SIELLTTSGIQFKKHEEEGIETQY----FAELLMTSGVVLCEGVKWLSFHSGYDF-GYLIKILTN--SNLPEEELDFFEI 174 (252)
T ss_dssp HHHHHHHHTCCHHHHHHHCBCHHH----HHHHHHTTTSSSSSSCEEEESSCHHHH-HHHHHHHHT--SCCCSSHHHHHHH
T ss_pred HHHHHHHcCCChhHHHhcCCCHHH----HHHHHHhcCcccCCCceEEEecCcchH-HHHHHHhcC--CCCCCCHHHHHHH
Confidence 5554 699887764 6888774 55556556554 34444554 688998 788776653 34442
Q ss_pred ---CCCceeehHHHHHHhcCCCCCCHHHHHHHcCCCCCCCCCcHHHHHHHHHHHHHHHHHccCc
Q 017267 219 ---YFNRWINLKVPFHEVFGGVRCNLKEAVEMAGLAWQGRAHCGLDDAKNTARLLALLMHRGFK 279 (374)
Q Consensus 219 ---~~~~~iDt~~l~~~~~~~~~~~L~~l~~~lgI~~~g~~HrALdDA~atA~l~~~ll~~g~~ 279 (374)
++..++|++-+.+...+. ..+|..+++.+|++..|..|.|-.||..|+.+|.+|.+....
T Consensus 175 l~~~FP~iyD~K~l~~~~~~l-~~gL~~la~~L~v~r~g~~HqAGsDsllT~~~F~km~~~~f~ 237 (252)
T 2d5r_A 175 LRLFFPVIYDVKYLMKSCKNL-KGGLQEVAEQLELERIGPQHQAGSDSLLTGMAFFKMREMFFE 237 (252)
T ss_dssp HHHHCSCEEEHHHHGGGCTTC-CSSHHHHHHHHTCCCCSSTTSHHHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHCcchhhHHHHHHHhccc-CCCHHHHHHHcCCCccCcccchhhhHHHHHHHHHHHHHHhcC
Confidence 122567887666543333 467999999999988888999999999999999999877643
No 23
>1uoc_A POP2; hydrolase, DEDD nuclease, mRNA degradation, poly(A) tail, transcription regulation, repressor, phosphorylation.; 2.3A {Saccharomyces cerevisiae} SCOP: c.55.3.9
Probab=98.40 E-value=1.2e-05 Score=77.44 Aligned_cols=173 Identities=14% Similarity=0.103 Sum_probs=118.3
Q ss_pred ccEEEEEEeeCCCCCCCC------------------CCCceEEEceEEEEcCCCeE------EEEEEEeecCCCCCCCCc
Q 017267 96 QYFVVIDFEATCDKDKNP------------------YPQEIIEFPSVIVSSVTGQL------EACFQTYVRPTCNQLLSD 151 (374)
Q Consensus 96 ~~~VVfDlETTGl~~~~~------------------~~deIIEIGAVkvd~~~G~i------idsF~~lVkP~~~p~Is~ 151 (374)
-.||++|+|.+|.-.... ..-.||++|....| .+|+. .-.|+.+..... ....+
T Consensus 38 ~~fVAmDtEFpGvv~rp~g~f~~~~d~~Yq~lr~nVd~l~iIQlGLt~~~-~~g~~p~~~~~~wqFNF~F~~~~-d~~~~ 115 (289)
T 1uoc_A 38 YNHVSISTEFVGTLARPIGTFRSKVDYHYQTMRANVDFLNPIQLGLSLSD-ANGNKPDNGPSTWQFNFEFDPKK-EIMST 115 (289)
T ss_dssp SCEEEEEEEEEC----------CHHHHHHHHHHHHHTTCEEEEEEEEEEC-TTCCCCSSSCSEEEEEBCCCTTC-CCCCH
T ss_pred CCEEEEEeeecceeccCCcccCCCHHHHHHHHHHhhhhccceEEEEEEEc-cCCCcCCCCcceEEEEEEECCcc-ccccH
Confidence 479999999999842110 23479999999998 55653 456777655543 22455
Q ss_pred chhhh---cCCChHHHh-CCCCHHHHHHHHHHHHhhcCCC-CccEEEEE-cCcchHHHHHHHHHHHcCCCCCC-------
Q 017267 152 FCKDL---TGIQQIQVD-RGVTLSEALLRHDKWLENKGIK-NTNFAVVT-WSNWDCRVMLESECRFKKIWKPP------- 218 (374)
Q Consensus 152 ~~~~L---TGIt~e~v~-~ap~~~eVl~ef~~fl~~~~l~-~~n~~vv~-~g~fDl~~fL~~~~~~~gi~~P~------- 218 (374)
.+.++ +||+-+... .+.+.. +|.+.+-.++|+ ..++.+++ ++.+|+ .||-+-+.. -++|.
T Consensus 116 ~SI~fL~~~G~DF~k~~~~GI~~~----~F~ell~~sgLvl~~~v~Witfhg~yDf-gyL~k~Lt~--~~LP~~~~~F~~ 188 (289)
T 1uoc_A 116 ESLELLRKSGINFEKHENLGIDVF----EFSQLLMDSGLMMDDSVTWITYHAAYDL-GFLINILMN--DSMPNNKEDFEW 188 (289)
T ss_dssp HHHHHHHHTTCCHHHHHHHCBCHH----HHHHHHHTSSCSSCTTSEEEESSTTHHH-HHHHHHHTT--SCCCSSHHHHHH
T ss_pred HHHHHHHHcCCChhHHHHcCCCHH----HHHHHHHhcCCccCCCceEEEccCcchH-HHHHHHhcc--ccCCcCHHHHHH
Confidence 55543 789877764 688876 566666666654 33444555 688998 788766543 34442
Q ss_pred ----CCCceeehHHHHHHhcCCC--------------CCCHHHHHHHcCCCCCCCCCcHHHHHHHHHHHHHHHHHcc
Q 017267 219 ----YFNRWINLKVPFHEVFGGV--------------RCNLKEAVEMAGLAWQGRAHCGLDDAKNTARLLALLMHRG 277 (374)
Q Consensus 219 ----~~~~~iDt~~l~~~~~~~~--------------~~~L~~l~~~lgI~~~g~~HrALdDA~atA~l~~~ll~~g 277 (374)
++..++|++-+.+...+.. +.+|..+++.+|++..|..|.|=.||..|+.+|.+|.+..
T Consensus 189 ~l~~~FP~iyD~K~l~~~~~~l~~~~~~~~~~~~~~~~~~L~~lA~~L~v~r~g~~HqAGsDSllT~~~F~kl~~~~ 265 (289)
T 1uoc_A 189 WVHQYMPNFYDLNLVYKIIQEFKNPQLQQSSQQQQQQQYSLTTLADELGLPRFSIFTTTGGQSLLMLLSFCQLSKLS 265 (289)
T ss_dssp HHHHHCSSEEEHHHHHHHHTTTCC-------------CCSHHHHHHHTTCCCCGGGGSHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHhCccceeHHHHHHHHHhccCcccccccccccccCCCHHHHHHHcCCCccCcccccHHHHHHHHHHHHHHHHHH
Confidence 1235789987766433221 3579999999999988889999999999999999998765
No 24
>2p51_A SPCC18.06C protein; DEDD nuclease fold, hydrolase, gene regulation; 1.40A {Schizosaccharomyces pombe} PDB: 3g0z_A 3g10_A
Probab=98.38 E-value=1.2e-05 Score=78.65 Aligned_cols=172 Identities=19% Similarity=0.194 Sum_probs=120.0
Q ss_pred ccEEEEEEeeCCCCCCC--C----------------CCCceEEEceEEEEcCCCeE-----EEEEEEeecCCCCCCCCcc
Q 017267 96 QYFVVIDFEATCDKDKN--P----------------YPQEIIEFPSVIVSSVTGQL-----EACFQTYVRPTCNQLLSDF 152 (374)
Q Consensus 96 ~~~VVfDlETTGl~~~~--~----------------~~deIIEIGAVkvd~~~G~i-----idsF~~lVkP~~~p~Is~~ 152 (374)
-.||++|+|.+|..... . ..-.||+||....| .+|+. .-.|........ ....+.
T Consensus 45 ~~fVAmDtEFpGvv~rp~g~f~~~~e~~Yq~lR~NVd~l~iIQlGLt~fd-~~G~~p~~~~twqFNF~F~~~~-d~~~~~ 122 (333)
T 2p51_A 45 YPVVSMDTEFPGVVARPLGVFKSSDDYHYQTLRANVDSLKIIQIGLALSD-EEGNAPVEACTWQFNFTFNLQD-DMYAPE 122 (333)
T ss_dssp SCEEEEEEECCCCCCCCCSCCSSSHHHHHHHHHHHHHHSCCCEEEEEEEC-TTSCCCTTCSEEEEEBCCCTTT-SCCCHH
T ss_pred CCEEEEeeeccccccccccccCCCHHHHHHHHHHhhhhccceEEEEEEEc-cCCCCCCCceeEEEEEEECCcc-cccCHH
Confidence 47999999999985211 0 11369999999998 56664 567777765543 235555
Q ss_pred hhhh---cCCChHHHh-CCCCHHHHHHHHHHHHhhcCCC-CccEEEEE-cCcchHHHHHHHHHHHcCCCCCC--------
Q 017267 153 CKDL---TGIQQIQVD-RGVTLSEALLRHDKWLENKGIK-NTNFAVVT-WSNWDCRVMLESECRFKKIWKPP-------- 218 (374)
Q Consensus 153 ~~~L---TGIt~e~v~-~ap~~~eVl~ef~~fl~~~~l~-~~n~~vv~-~g~fDl~~fL~~~~~~~gi~~P~-------- 218 (374)
+.++ +||+-+... +|.+..+ |.+.+-.++++ ..++.+++ ++.+|+ +||-+-+. +-++|.
T Consensus 123 SI~fL~~~G~DF~k~~~~GI~~~~----F~elL~~SGLvl~~~V~Witfhg~YDf-gyLlK~Lt--~~~LP~~~~eF~~~ 195 (333)
T 2p51_A 123 SIELLTKSGIDFKKHQEVGIEPAD----FAELLIGSGLVLQEEVTWITFHSGYDF-AYLLKAMT--QIPLPAEYEEFYKI 195 (333)
T ss_dssp HHHHHHHTTCCHHHHHHHCBCHHH----HHHHHHTTTSSSCTTCEEEESSCHHHH-HHHHHHHH--CSCCCSSHHHHHHH
T ss_pred HHHHHHHcCCChhHHHHcCCCHHH----HHHHHHhcCcccCCCceEEEeccchhH-HHHHHHhc--CCCCCCCHHHHHHH
Confidence 5554 699988764 7888874 55555555543 33444444 578898 78877664 334442
Q ss_pred ---CCCceeehHHHHHHhcCCCCCCHHHHHHHcCCCCCCCCCcHHHHHHHHHHHHHHHHHcc
Q 017267 219 ---YFNRWINLKVPFHEVFGGVRCNLKEAVEMAGLAWQGRAHCGLDDAKNTARLLALLMHRG 277 (374)
Q Consensus 219 ---~~~~~iDt~~l~~~~~~~~~~~L~~l~~~lgI~~~g~~HrALdDA~atA~l~~~ll~~g 277 (374)
++..++|++-+.+...++ ..+|..+++.|++...|..|.|-.||..|+.+|.+|.+..
T Consensus 196 l~~~FP~iYD~K~l~~~~~~l-~ggL~~lA~~L~v~Rig~~HqAGsDSlLT~~~F~kl~~~~ 256 (333)
T 2p51_A 196 LCIYFPKNYDIKYIMKSVLNN-SKGLQDIADDLQIHRIGPQHQAGSDALLTARIFFEIRSRY 256 (333)
T ss_dssp HHHHSSSEEEHHHHHTTTTCC-CCCHHHHHHHTTCCCCSCTTSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHCcchhhHHHHHHHhccc-cCCHHHHHHHcCCCccCcchhhhhHHHHHHHHHHHHHHHh
Confidence 123577887666544332 4689999999999888899999999999999999998754
No 25
>1qht_A Protein (DNA polymerase); archaea, hyperthermostable, family B polymer alpha family polymerase, transferase; 2.10A {Thermococcus SP} SCOP: c.55.3.5 e.8.1.1 PDB: 1tgo_A 2xhb_A* 2vwj_A* 2vwk_A* 1wns_A* 1wn7_A 1qqc_A* 4ahc_A* 4ail_C* 3a2f_A* 2jgu_A* 1d5a_A
Probab=98.20 E-value=2.9e-05 Score=83.93 Aligned_cols=152 Identities=15% Similarity=0.065 Sum_probs=103.0
Q ss_pred ccEEEEEEeeCCCCCCCCCCCceEEEceEEEEcCCCeEEEEEEEeecCCCCCCCCcchhhhcCCChHHHhCCCCHHHHHH
Q 017267 96 QYFVVIDFEATCDKDKNPYPQEIIEFPSVIVSSVTGQLEACFQTYVRPTCNQLLSDFCKDLTGIQQIQVDRGVTLSEALL 175 (374)
Q Consensus 96 ~~~VVfDlETTGl~~~~~~~deIIEIGAVkvd~~~G~iidsF~~lVkP~~~p~Is~~~~~LTGIt~e~v~~ap~~~eVl~ 175 (374)
-..+.||+||+|..+.++..++||.|+.+. .++..+ + + .+| |..+.+...++..+.|.
T Consensus 135 l~ilsfDIEt~~~~~p~~~~d~Ii~Is~~~---~~~~~~--~-t-~~~---------------i~~~~v~~~~~E~~LL~ 192 (775)
T 1qht_A 135 LTMLAFAIATLYHEGEEFGTGPILMISYAD---GSEARV--I-T-WKK---------------IDLPYVDVVSTEKEMIK 192 (775)
T ss_dssp CCEEEEEEEECCCTTCCTTCSCEEEEEEEC---SSCEEE--E-E-SSC---------------CCCSSEEECSCHHHHHH
T ss_pred cEEEEEEEEEcCCCCCCCCCCcEEEEEEEe---cCCCee--E-e-ecc---------------ccccceEEcCCHHHHHH
Confidence 368999999999544456789999998653 233211 1 1 112 11123555678899999
Q ss_pred HHHHHHhhcCCCCccEEEEEcC-cchHHHHHHHHHHHcCCCCCCC---------------------CCceeehHHHHHHh
Q 017267 176 RHDKWLENKGIKNTNFAVVTWS-NWDCRVMLESECRFKKIWKPPY---------------------FNRWINLKVPFHEV 233 (374)
Q Consensus 176 ef~~fl~~~~l~~~n~~vv~~g-~fDl~~fL~~~~~~~gi~~P~~---------------------~~~~iDt~~l~~~~ 233 (374)
+|.+++..... .+++.+|+ .||+ .+|..-+..+|++.+ + ....+|+..+++..
T Consensus 193 ~f~~~i~~~dP---DiivGyN~~~FDl-pyL~~Ra~~~gi~~~-lgR~~~~~~~~~~g~~~~~~i~Gr~~lDl~~~~k~~ 267 (775)
T 1qht_A 193 RFLRVVREKDP---DVLITYNGDNFDF-AYLKKRCEELGIKFT-LGRDGSEPKIQRMGDRFAVEVKGRIHFDLYPVIRRT 267 (775)
T ss_dssp HHHHHHHHHCC---SEEEESSTTTTHH-HHHHHHHHHTTCCCC-CSTTSCCCEEEEETTEEEEECTTSEEEEHHHHHHHH
T ss_pred HHHHHHHhcCC---CEEEEeCCCCccH-HHHHHHHHHcCCCcc-cccCCCcCceeecCceeeEEecCeEEEEHHHHHHHh
Confidence 99999987531 23333454 7997 899998988888753 1 12357998888887
Q ss_pred cCCCCCCHHHHHH-HcCCCCCCCC------------------CcHHHHHHHHHHHHHHHH
Q 017267 234 FGGVRCNLKEAVE-MAGLAWQGRA------------------HCGLDDAKNTARLLALLM 274 (374)
Q Consensus 234 ~~~~~~~L~~l~~-~lgI~~~g~~------------------HrALdDA~atA~l~~~ll 274 (374)
+...+++|+++++ .+|..-.+-. +-.+.||..|.+|+.+++
T Consensus 268 ~~l~sysL~~Va~~~Lg~~K~dv~~~~i~~~~~~~~~l~~l~~Y~~~Da~lt~~L~~~~~ 327 (775)
T 1qht_A 268 INLPTYTLEAVYEAVFGKPKEKVYAEEIAQAWESGEGLERVARYSMEDAKVTYELGREFF 327 (775)
T ss_dssp SCCSCCCHHHHHHHHHCCCCCCCCHHHHHHHHTTTCSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCcCcCCHHHHHHHHhCCCCCccCHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHhhh
Confidence 7778899999997 5787532111 112679999999877654
No 26
>3iay_A DNA polymerase delta catalytic subunit; protein-DNA complex, DNA replication, DNA-BI DNA-directed DNA polymerase, exonuclease, hydrolase; HET: DNA DOC DCP; 2.00A {Saccharomyces cerevisiae}
Probab=97.73 E-value=0.00069 Score=74.54 Aligned_cols=156 Identities=16% Similarity=0.135 Sum_probs=101.0
Q ss_pred cEEEEEEeeCCCCCCC--CCCCceEEEceEEEEcCCCeE---EE-EEEEeecCCCCCCCCcchhhhcCCChHHHhCCCCH
Q 017267 97 YFVVIDFEATCDKDKN--PYPQEIIEFPSVIVSSVTGQL---EA-CFQTYVRPTCNQLLSDFCKDLTGIQQIQVDRGVTL 170 (374)
Q Consensus 97 ~~VVfDlETTGl~~~~--~~~deIIEIGAVkvd~~~G~i---id-sF~~lVkP~~~p~Is~~~~~LTGIt~e~v~~ap~~ 170 (374)
..+.||+||++.++.. +..|+||.|+.+.-. .|.. .. .| -+.+.. .+....|..-++.
T Consensus 250 rilSfDIEt~~~~g~fP~~~~D~Ii~IS~~v~~--~g~~~~~~r~~f--~l~~~~------------~~~~~~V~~~~sE 313 (919)
T 3iay_A 250 RIMSFDIECAGRIGVFPEPEYDPVIQIANVVSI--AGAKKPFIRNVF--TLNTCS------------PITGSMIFSHATE 313 (919)
T ss_dssp EEEEEEEEECCCTTSCCCTTTCCEEEEEEEEEE--TTCSSCSEEEEE--EESCCC------------CBTTBEEEEESSH
T ss_pred eEEEEEEEECCCCCCCCCCCCCcEEEEEEEEec--CCCcccceeEEE--EecCCC------------CCCCCeEEECCCH
Confidence 5889999999765433 467999999987653 3421 11 11 122211 1223346667789
Q ss_pred HHHHHHHHHHHhhcCCCCccEEEEE-cC-cchHHHHHHHHHHHcCCCCCC-CC---------------------------
Q 017267 171 SEALLRHDKWLENKGIKNTNFAVVT-WS-NWDCRVMLESECRFKKIWKPP-YF--------------------------- 220 (374)
Q Consensus 171 ~eVl~ef~~fl~~~~l~~~n~~vv~-~g-~fDl~~fL~~~~~~~gi~~P~-~~--------------------------- 220 (374)
.+.|.+|.+|+.... -. +|++ |+ .||+ .+|..-++.+|++... +.
T Consensus 314 ~eLL~~F~~~i~~~D---PD-IIvGyNi~~FDl-pyL~~Ra~~lgi~~~~~lGR~~~~~~~~~~~~~~~~~~g~~~~~~~ 388 (919)
T 3iay_A 314 EEMLSNWRNFIIKVD---PD-VIIGYNTTNFDI-PYLLNRAKALKVNDFPYFGRLKTVKQEIKESVFSSKAYGTRETKNV 388 (919)
T ss_dssp HHHHHHHHHHHHHHC---CS-EEEESSTTTTHH-HHHHHHHHHTTCTTCSCCSSBTTCCCCBCCEEEEETTTEEEEECCB
T ss_pred HHHHHHHHHHHHHhC---CC-EEEecCCccCCH-HHHHHHHHHcCCCchhhhccccCcccccccccccccccccccccee
Confidence 999999999998742 12 3444 44 7997 8999888888887321 10
Q ss_pred ----CceeehHHHHHHhcCCCCCCHHHHHHHc-CCCCCCCCC-------------------cHHHHHHHHHHHHHHH
Q 017267 221 ----NRWINLKVPFHEVFGGVRCNLKEAVEMA-GLAWQGRAH-------------------CGLDDAKNTARLLALL 273 (374)
Q Consensus 221 ----~~~iDt~~l~~~~~~~~~~~L~~l~~~l-gI~~~g~~H-------------------rALdDA~atA~l~~~l 273 (374)
.-.+|+..+++..+...+++|+++++++ |..-.+-+| -.+.||..+.+|+.++
T Consensus 389 ~i~GR~~lDl~~~~k~~~~l~sysL~~Va~~~Lg~~K~dv~~~~I~~l~~~~~~~~~~L~~Y~~~Da~l~~~L~~kl 465 (919)
T 3iay_A 389 NIDGRLQLDLLQFIQREYKLRSYTLNAVSAHFLGEQKEDVHYSIISDLQNGDSETRRRLAVYCLKDAYLPLRLMEKL 465 (919)
T ss_dssp CCTTCEEEEHHHHHHHHCCCSCCCHHHHHHHHHCCC------CCHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred EEcCeEEEEhHHHHHhhcCCCCCCHHHHHHHhcccCCCCCCHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 1246888888877777899999998764 543221111 1267999999998876
No 27
>1noy_A Protein (DNA polymerase (E.C.2.7.7.7)); exonuclease, DNA-binding, complex (nucleotidyltransferase/DNA); HET: DNA; 2.20A {Enterobacteria phage T4} SCOP: c.55.3.5 PDB: 1noz_A*
Probab=97.70 E-value=0.001 Score=66.14 Aligned_cols=164 Identities=12% Similarity=0.029 Sum_probs=98.3
Q ss_pred cEEEEEEeeCCCCCCCC----CCCceEEEceEEEEcCCCeEEEEEEEeecCCCCCCCCcchhh------hcCCC---hH-
Q 017267 97 YFVVIDFEATCDKDKNP----YPQEIIEFPSVIVSSVTGQLEACFQTYVRPTCNQLLSDFCKD------LTGIQ---QI- 162 (374)
Q Consensus 97 ~~VVfDlETTGl~~~~~----~~deIIEIGAVkvd~~~G~iidsF~~lVkP~~~p~Is~~~~~------LTGIt---~e- 162 (374)
..+.||+||++ . +.| ..++||.|+.+-. .+++. ..| .++++.... ..+...+ +..++ ..
T Consensus 107 ~vlsfDIEt~~-~-~fP~~~~~~d~Ii~Is~~~~--~~~~~-~~~-~l~~~~~~~-~~~~~~~~~~~~~~f~~~~~~~~~ 179 (388)
T 1noy_A 107 RVANCDIEVTG-D-KFPDPMKAEYEIDAITHYDS--IDDRF-YVF-DLLNSMYGS-VSKWDAKLAAKLDCEGGDEVPQEI 179 (388)
T ss_dssp CEEEEEEEECC-S-SCCCTTTCCSCEEEEEEEET--TTTEE-EEE-EECCCSSCC-CCCCCHHHHHSCGGGTCCCCCHHH
T ss_pred EEEEEEEEeCC-C-CCCCCCCCCCeEEEEEEEEe--cCCeE-EEE-EEeeccCCC-CCcccccccccccccccccccccc
Confidence 58999999998 2 233 2469999987533 34442 122 235443211 1111110 11111 11
Q ss_pred --H--HhCCCCHHHHHHHHHHHHhhcCCCCccEEEE-EcC-cchHHHHHHHHHHH-cCCC-------CC---------CC
Q 017267 163 --Q--VDRGVTLSEALLRHDKWLENKGIKNTNFAVV-TWS-NWDCRVMLESECRF-KKIW-------KP---------PY 219 (374)
Q Consensus 163 --~--v~~ap~~~eVl~ef~~fl~~~~l~~~n~~vv-~~g-~fDl~~fL~~~~~~-~gi~-------~P---------~~ 219 (374)
. |...++..+.|.+|.+++..... . +|+ +|+ .||+ .+|..-++. +|++ .. .+
T Consensus 180 ~~~v~v~~~~~E~~LL~~f~~~i~~~dP---D-ii~GyN~~~FDl-pyL~~Ra~~~lg~~l~~~~s~~~r~~~~~~~~~~ 254 (388)
T 1noy_A 180 LDRVIYMPFDNERDMLMEYINLWEQKRP---A-IFTGWNIEGFDV-PYIMNRVKMILGERSMKRFSPIGRVKSKLLQNMY 254 (388)
T ss_dssp HTTEEEEEESCHHHHHHHHHHHHHHSCC---S-EEECSSTTTTHH-HHHHHHHHHHHHHHHHGGGSTTSCEEEEECCGGG
T ss_pred CCCeEEEEcCCHHHHHHHHHHHHHHhCC---c-EEEecCCCCccH-HHHHHHHHHHcCCccccccCcccccccccChhhh
Confidence 1 23466789999999999986421 2 344 454 8998 788777776 6631 01 00
Q ss_pred CC---------ceeehHHHHHHh-cC-CCCCCHHHHHH-HcCCCCCCCCCc----------------HHHHHHHHHHHHH
Q 017267 220 FN---------RWINLKVPFHEV-FG-GVRCNLKEAVE-MAGLAWQGRAHC----------------GLDDAKNTARLLA 271 (374)
Q Consensus 220 ~~---------~~iDt~~l~~~~-~~-~~~~~L~~l~~-~lgI~~~g~~Hr----------------ALdDA~atA~l~~ 271 (374)
.. -.+|+..+++.+ +. ..+++|+++++ .+|..-. .++. .+.||..|.+|+.
T Consensus 255 g~~~~~~i~GR~~lD~~~~~k~~~~~~l~sysL~~Va~~~Lg~~K~-d~~~~i~~~~~~~~~~l~~Y~~~D~~l~~~L~~ 333 (388)
T 1noy_A 255 GSKEIYSIDGVSILDYLDLYKKFAFTNLPSFSLESVAQHETKKGKL-PYDGPINKLRETNHQRYISYNIIDVESVQAIDK 333 (388)
T ss_dssp CSCEEEEETTSEECCHHHHHHHHTCCCCSCCSHHHHHHHHHSCCCC-CCSSCGGGHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcceEEEcCeEEeEHHHHHhhcCcCcccCCCHHHHHHHHhCCCCC-CcHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHH
Confidence 01 167998888874 65 77899999998 6666432 2212 4789999999998
Q ss_pred HH
Q 017267 272 LL 273 (374)
Q Consensus 272 ~l 273 (374)
++
T Consensus 334 kl 335 (388)
T 1noy_A 334 IR 335 (388)
T ss_dssp HH
T ss_pred HH
Confidence 84
No 28
>1s5j_A DNA polymerase I; replication, disulfide bonds, transferase; HET: DNA; 2.40A {Sulfolobus solfataricus} SCOP: c.55.3.5 e.8.1.1
Probab=97.60 E-value=0.0003 Score=76.75 Aligned_cols=155 Identities=21% Similarity=0.130 Sum_probs=96.9
Q ss_pred cEEEEEEee-CCCCCCCCC----CCceEEEceEEEEcCCCeEEEEEEEeecCCCCCCCCcchhhhcCCChHHHhCCCCHH
Q 017267 97 YFVVIDFEA-TCDKDKNPY----PQEIIEFPSVIVSSVTGQLEACFQTYVRPTCNQLLSDFCKDLTGIQQIQVDRGVTLS 171 (374)
Q Consensus 97 ~~VVfDlET-TGl~~~~~~----~deIIEIGAVkvd~~~G~iidsF~~lVkP~~~p~Is~~~~~LTGIt~e~v~~ap~~~ 171 (374)
.+++||+|| |+.+++.|. .+.||+||.+ + .+|. +-..++++.. .+..+.. |....+..-++..
T Consensus 191 ~ilsfDIEt~s~~~g~fP~~~~~~d~Ii~Is~~--~-~~g~---~~~~~~~~~~---~~~~~~~---i~~~~v~~~~~E~ 258 (847)
T 1s5j_A 191 KRVAIDIEVYTPVKGRIPDSQKAEFPIISIALA--G-SDGL---KKVLVLNRND---VNEGSVK---LDGISVERFNTEY 258 (847)
T ss_dssp CEEEEEEEECCSSSSCCCCTTTCCSCEEEEEEE--E-TTSC---EEEEEECSSC---CCCCCEE---ETTEEEEEESSHH
T ss_pred eEEEEEEEeCcCCCCCCCCccccCCcEEEEEEE--c-cCCC---cEEEEEeCCc---ccccccC---CCCCeEEEeCCHH
Confidence 689999999 764444443 3799999985 3 3453 1234556542 2221111 2333455567899
Q ss_pred HHHHHHHHHHhhcCCCCccEEEEEc-C-cchHHHHHHHHHHHcCCCC---CC-C---------CCceeehHHHHHH----
Q 017267 172 EALLRHDKWLENKGIKNTNFAVVTW-S-NWDCRVMLESECRFKKIWK---PP-Y---------FNRWINLKVPFHE---- 232 (374)
Q Consensus 172 eVl~ef~~fl~~~~l~~~n~~vv~~-g-~fDl~~fL~~~~~~~gi~~---P~-~---------~~~~iDt~~l~~~---- 232 (374)
+.|.+|.+|+.+. . ++++| + +||+ .+|..-++++|+.. |. + ....+|+...++.
T Consensus 259 ~LL~~f~~~i~~~-----d-iivgyN~~~FDl-PyL~~Ra~~lgi~~~~~p~~~~gr~~~~i~gr~~~Dl~~~~~~~~~~ 331 (847)
T 1s5j_A 259 ELLGRFFDILLEY-----P-IVLTFNGDDFDL-PYIYFRALKLGYFPEEIPIDVAGKDEAKYLAGLHIDLYKFFFNKAVR 331 (847)
T ss_dssp HHHHHHHHHHTTC-----S-EEEESSTTTTHH-HHHHHHHHTTTCCGGGCSEECCSTTCCEETTSEEEEHHHHHTSHHHH
T ss_pred HHHHHHHHHhccC-----C-EEEEeCCCCchH-HHHHHHHHHcCCCcccCCeeecCCCceEeccEEEeehHHHHhhhhhh
Confidence 9999999999764 3 45555 4 7998 89999999999863 21 1 1234687765542
Q ss_pred --hcC--CCCCCHHHHHH-HcCCCCCC------CC------CcHHHHHHHHHHHH
Q 017267 233 --VFG--GVRCNLKEAVE-MAGLAWQG------RA------HCGLDDAKNTARLL 270 (374)
Q Consensus 233 --~~~--~~~~~L~~l~~-~lgI~~~g------~~------HrALdDA~atA~l~ 270 (374)
.++ ..+++|+++++ .+|..-.+ +. +-.+.||..|.+|+
T Consensus 332 ~y~f~~kl~sysL~~Va~~~Lg~~K~dv~~~i~~~~~~~l~~Ycl~Da~lt~~L~ 386 (847)
T 1s5j_A 332 NYAFEGKYNEYNLDAVAKALLGTSKVKVDTLISFLDVEKLIEYNFRDAEITLQLT 386 (847)
T ss_dssp HHTSTTCCSSCSHHHHHHHHHCCCCC--SSCTTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred hhccccccccccHHHHHHHHhCCCCcchhHhhhhccHHHHHHHHHHHHHHHHHHH
Confidence 122 35799999998 55653211 00 11367999999884
No 29
>2gv9_A DNA polymerase; polymerase alpha fold, transferase; HET: DNA; 2.68A {Human herpesvirus 1} PDB: 1dml_B*
Probab=97.52 E-value=0.0016 Score=73.49 Aligned_cols=170 Identities=14% Similarity=0.050 Sum_probs=99.4
Q ss_pred cEEEEEEeeCCCC---CCCC----CCCceEEEceEEEEcCCCeEEEEEEEee-cCCCCCCCCcch--hhhcCCChHHHhC
Q 017267 97 YFVVIDFEATCDK---DKNP----YPQEIIEFPSVIVSSVTGQLEACFQTYV-RPTCNQLLSDFC--KDLTGIQQIQVDR 166 (374)
Q Consensus 97 ~~VVfDlETTGl~---~~~~----~~deIIEIGAVkvd~~~G~iidsF~~lV-kP~~~p~Is~~~--~~LTGIt~e~v~~ 166 (374)
..+.|||||++.. ...| ..|+||.|+.+.....+... ...+| .......+.++. .+-.++....|..
T Consensus 321 rvlsfDIE~~~~g~~~~~FP~a~~~~D~Ii~IS~~~~~~~~~~~---~~~~v~~l~~~~~~~~f~~~~k~~~~~~~~V~~ 397 (1193)
T 2gv9_A 321 KLMCFDIECKAGGEDELAFPVAGHPEDLVIQISCLLYDLSTTAL---EHVLLFSLGSCDLPESHLNELAARGLPTPVVLE 397 (1193)
T ss_dssp EEEEEEEEEECCSSCTTSCCCTTSTTSEEEEEEEEEEETTTCCE---EEEEEEEESCCCCCHHHHHHHHHTTCCCCEEEE
T ss_pred eEEEEEEEEcccCCCCCCCCCccccCCceEEEEEEEEeccCCCc---ceEEEEECCCcCCcchhhhhcccccCCCceEEe
Confidence 5899999998641 1123 35899999988764211111 11222 111101011111 0111221122445
Q ss_pred CCCHHHHHHHHHHHHhhcCCCCccEEEEEcC-cchHHHHHHHH-HHHcCCCCCCCC------------------------
Q 017267 167 GVTLSEALLRHDKWLENKGIKNTNFAVVTWS-NWDCRVMLESE-CRFKKIWKPPYF------------------------ 220 (374)
Q Consensus 167 ap~~~eVl~ef~~fl~~~~l~~~n~~vv~~g-~fDl~~fL~~~-~~~~gi~~P~~~------------------------ 220 (374)
-.+..+.|.+|.+|+....- .+++.+|+ .||+ .+|..- +..+|++++.+.
T Consensus 398 ~~sE~eLL~~F~~~I~~~DP---DIIvGyNi~~FDl-pyL~~Ra~~~~gl~l~~~GRl~r~~~~k~~~~~~~~f~~~~~~ 473 (1193)
T 2gv9_A 398 FDSEFEMLLAFMTLVKQYGP---EFVTGYNIINFDW-PFLLAKLTDIYKVPLDGYGRMNGRGVFRVWDIGQSHFQKRSKI 473 (1193)
T ss_dssp ESSHHHHHHHHHHHHHHHCC---SEEEESSTTTTHH-HHHHHHHHHTTCCCCTTTSSBSSSCCEEECC----------CE
T ss_pred cCCHHHHHHHHHHHHHhcCC---CEEEEcCCcCccH-HHHHHHHHHHcCCChHHhcccccCCcceeeccccccccccceE
Confidence 57789999999999997531 23333344 8998 777666 466787765321
Q ss_pred ----CceeehHHHHHHhcCCCCCCHHHHHHH-cCCCCCCCC-------------------CcHHHHHHHHHHHHHHH
Q 017267 221 ----NRWINLKVPFHEVFGGVRCNLKEAVEM-AGLAWQGRA-------------------HCGLDDAKNTARLLALL 273 (374)
Q Consensus 221 ----~~~iDt~~l~~~~~~~~~~~L~~l~~~-lgI~~~g~~-------------------HrALdDA~atA~l~~~l 273 (374)
.-.+|+..+++..+...+++|++++++ ||..-.+-. +-.+.||..+.+||.++
T Consensus 474 ~i~GRv~lDl~~~~~~~~kl~sYsL~~Va~~~Lg~~K~dv~~~eI~~~~~~~~~~r~~L~~Ycl~Da~lt~~L~~kl 550 (1193)
T 2gv9_A 474 KVNGMVNIDMYGIITDKIKLSSYKLNAVAEAVLKDKKKDLSYRDIPAYYATGPAQRGVIGEYCIQDSLLVGQLFFKF 550 (1193)
T ss_dssp EETTBEEEEHHHHHTTTCCCSCCCHHHHHHHTSCCCCCCCCTTTHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEcCeEeehHHHHHHHHhccCCCCHHHHHHHHhccCCCCCCHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHHHHHH
Confidence 024688777777677789999999975 665432111 11257999999998876
No 30
>3f2b_A DNA-directed DNA polymerase III alpha chain; DNA polymerase C, DNA polymerase III; HET: DGT; 2.39A {Geobacillus kaustophilus} PDB: 3f2c_A* 3f2d_A*
Probab=97.47 E-value=4.3e-05 Score=84.57 Aligned_cols=46 Identities=7% Similarity=-0.048 Sum_probs=42.7
Q ss_pred cccCCCCCCChhhHHHHHHhcCCcceeecccC---------------CCCccccccccccc
Q 017267 38 ELKDDTIVHPGGDAGESIHQLSSEFVEYSNEF---------------YNNPTYQHDFGSWS 83 (374)
Q Consensus 38 ~~~~~~~~~~~~~~~~~a~~~g~~a~aitd~~---------------~~k~~y~~e~~~~~ 83 (374)
..|-+||+.+++++|++|++||++|||||||+ ++|||+|+|++...
T Consensus 124 ~~S~lDG~~~~~eLv~~A~~~G~~aiAITDH~~~~G~~~~~~~a~~~gIk~I~G~E~~~~~ 184 (1041)
T 3f2b_A 124 PMSQMDAVTSVTKLIEQAKKWGHPAIAVTDHAVVQSFPEAYSAAKKHGMKVIYGLEANIVD 184 (1041)
T ss_dssp TTSTTTCCSCHHHHHHHHHHTTCSCEEECCBSCCTTHHHHHHHHHHHTCCEEEEEEEEEEC
T ss_pred cCccccccCCHHHHHHHHHHCCCCEEEEecccchhhHHHHHHHHHHCCCEEEEEEEEEEEe
Confidence 66778999999999999999999999999999 68999999999764
No 31
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=97.40 E-value=0.0021 Score=66.24 Aligned_cols=85 Identities=14% Similarity=-0.076 Sum_probs=56.8
Q ss_pred cEEEEEcCcchHHHHHHHHHHHcCCCCCC-----------CCCceeehHHHHHH--hcC-CCCCCHHHHHHHcC-----C
Q 017267 190 NFAVVTWSNWDCRVMLESECRFKKIWKPP-----------YFNRWINLKVPFHE--VFG-GVRCNLKEAVEMAG-----L 250 (374)
Q Consensus 190 n~~vv~~g~fDl~~fL~~~~~~~gi~~P~-----------~~~~~iDt~~l~~~--~~~-~~~~~L~~l~~~lg-----I 250 (374)
+.+|.||+-.|+ .+|-+.+- + ++|. ++..++||+-+... +.. ....+|..+.+.+. .
T Consensus 277 kpiVgHN~l~Dl-~~l~~~F~--~-pLP~~~~eFk~~i~~lFP~i~DTK~la~~~~~~~~~~~~~L~~l~~~l~~~~~~~ 352 (507)
T 3d45_A 277 KLVVGHNMLLDV-MHTIHQFY--C-PLPADLNEFKEMAICVFPRLLDTKLMASTQPFKDIINNTSLAELEKRLKETPFDP 352 (507)
T ss_dssp CEEEESSCHHHH-HHHHHHHT--C-SCCSSHHHHHHHHHHHCSCEEEHHHHTTSTTHHHHCCCCCHHHHHHHTTSTTCCC
T ss_pred CeEEEechHHHH-HHHHHHhc--C-CCCCCHHHHHHHHHHhCCceeEhHhhhhcCccccccCCCCHHHHHHHHhccCCCC
Confidence 456677788898 67766553 2 4442 12357899866542 111 23578999999986 2
Q ss_pred CC-------------CCCCCcHHHHHHHHHHHHHHHHHccC
Q 017267 251 AW-------------QGRAHCGLDDAKNTARLLALLMHRGF 278 (374)
Q Consensus 251 ~~-------------~g~~HrALdDA~atA~l~~~ll~~g~ 278 (374)
+. .+..|.|=.||..|+.+|.+|.....
T Consensus 353 p~i~~~~~~~~y~~~~~~~HeAGyDA~mTg~~F~kl~~~l~ 393 (507)
T 3d45_A 353 PKVESAEGFPSYDTASEQLHEAGYDAYITGLCFISMANYLG 393 (507)
T ss_dssp CCEEECTTSCCCC----CCCCHHHHHHHHHHHHHHHHHHHC
T ss_pred CeEEecccccccccCCCCcccHHHHHHHHHHHHHHHHHHHh
Confidence 21 24579999999999999999986543
No 32
>2hnh_A DNA polymerase III alpha subunit; DNA replication, nucleotidyltransferase, beta, PHP, transferase; HET: DNA; 2.30A {Escherichia coli} PDB: 2hqa_A*
Probab=97.09 E-value=0.00019 Score=78.86 Aligned_cols=46 Identities=9% Similarity=-0.062 Sum_probs=41.2
Q ss_pred cccCCCCCCChhhHHHHHHhcCCcceeecccC---------------CCCccccccccccc
Q 017267 38 ELKDDTIVHPGGDAGESIHQLSSEFVEYSNEF---------------YNNPTYQHDFGSWS 83 (374)
Q Consensus 38 ~~~~~~~~~~~~~~~~~a~~~g~~a~aitd~~---------------~~k~~y~~e~~~~~ 83 (374)
..|-+||..+++++|++|+++|+++||||||+ ++|||+|+|++...
T Consensus 14 ~~S~lDG~~~~~elv~~A~~~Gl~alAITDH~~~~G~~~~~~~~~~~gIk~I~G~Ei~~~~ 74 (910)
T 2hnh_A 14 DYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPIVGADFNVQC 74 (910)
T ss_dssp GGGSSSCCSCHHHHHHHHHHTTCSEEEECCBTCCTTHHHHHHHHHHHTCEEEEEEEEEEEC
T ss_pred cCchhcccCCHHHHHHHHHHCCCCEEEEEeCCcchhHHHHHHHHHHCCCeEEEEEEEEEec
Confidence 45678999999999999999999999999998 68899999988643
No 33
>3qex_A DNA polymerase, GP43; difluorotoluene nucleoside; HET: DNA DOC DGT; 1.73A {Enterobacteria phage RB69} PDB: 3qei_A* 3qer_A* 3qes_A* 3qet_A* 3qep_A* 3qew_A* 3qev_A* 3s9h_A* 3sq0_A* 4dtn_A* 4dto_A* 4dtp_A* 4dtr_A* 4dts_A* 4dtu_A* 4dtx_A* 4e3s_A* 4fjm_A* 4fjl_A* 3spz_A* ...
Probab=96.65 E-value=0.032 Score=61.21 Aligned_cols=216 Identities=10% Similarity=0.039 Sum_probs=121.2
Q ss_pred CcccccCCCCCCChhhHHHHHHhcCCcceeecccCCCCcccccccccccccCCC--CCCCCCCccEEEEEEeeCCCCCCC
Q 017267 35 NSVELKDDTIVHPGGDAGESIHQLSSEFVEYSNEFYNNPTYQHDFGSWSTFYPD--SQKPQEFQYFVVIDFEATCDKDKN 112 (374)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~a~~~g~~a~aitd~~~~k~~y~~e~~~~~~~~~~--~~~~~~~~~~VVfDlETTGl~~~~ 112 (374)
.+....+.+++....+++|+...-|.++..-.|-- .+ | +.+...+ +..... -..+.||+|++..+ +.
T Consensus 55 ~~~~~~~f~~~~~~~~~~k~~~~~~~~~~g~~~~~-~q--y------~~~~~~~~i~~~~~~-ir~~~~DIEv~~~~-~f 123 (903)
T 3qex_A 55 KPCTRKLFANMRDASQWIKRMEDIGLEALGMDDFK-LA--Y------LSDTYNYEIKYDHTK-IRVANFDIEVTSPD-GF 123 (903)
T ss_dssp CEEEEEECSSHHHHHHHHHHHHHHTCCCBSCCSHH-HH--H------HHHHCCSCCCCCGGG-SCEEEEEEECCCTT-SS
T ss_pred CcccccCCCCHHHHHHHHHHhhccCcccccCcHHH-HH--H------HHHHcccccccCccc-ccEEEEeEEeCCCC-CC
Confidence 44456667777788889998777666655422111 00 1 0111111 111111 35899999998743 23
Q ss_pred C----CCCceEEEceEEEEcCCCeEEEEEEEeecCCCCCCCCcchhhh---------cCCChHHHhC-----CCCHHHHH
Q 017267 113 P----YPQEIIEFPSVIVSSVTGQLEACFQTYVRPTCNQLLSDFCKDL---------TGIQQIQVDR-----GVTLSEAL 174 (374)
Q Consensus 113 ~----~~deIIEIGAVkvd~~~G~iidsF~~lVkP~~~p~Is~~~~~L---------TGIt~e~v~~-----ap~~~eVl 174 (374)
| ..++||.|+.+ |..+.+.+ .|..+-.|.. ...++..+. ..+..+.+.+ -++..+.|
T Consensus 124 Pd~~~~~~~Ii~It~~--d~~~~~~~-~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~f~sE~eLL 198 (903)
T 3qex_A 124 PEPSQAKHPIDAITHY--DSIDDRFY-VFDLLNSPYG--NVEEWSIEIAAKLQEQGGDEVPSEIIDKIIYMPFDNEKELL 198 (903)
T ss_dssp CCTTTCCSCCCEEEEE--ETTTTEEE-EEEECEETTE--ECCCCCHHHHHSCGGGTCCCCCHHHHTTEEEEEESSHHHHH
T ss_pred CCcccCCCCEEEEEEE--eCCCCEEE-EEEeeccccc--cccccccccccccccccccccccccCCCeEEEEcCCHHHHH
Confidence 3 36899999777 64444421 2222222211 111221111 1233443332 45788999
Q ss_pred HHHHHHHhhcCCCCccEEEEE-cC-cchHHHHHHHHHHH-cCCCC----CCCC---------------------Cceeeh
Q 017267 175 LRHDKWLENKGIKNTNFAVVT-WS-NWDCRVMLESECRF-KKIWK----PPYF---------------------NRWINL 226 (374)
Q Consensus 175 ~ef~~fl~~~~l~~~n~~vv~-~g-~fDl~~fL~~~~~~-~gi~~----P~~~---------------------~~~iDt 226 (374)
.+|.+|+....- . +|++ |+ .||+ .+|..-++. +|++. ..+. .-.+|+
T Consensus 199 ~~F~~~I~~~DP---D-IItGyN~~~FDl-PYL~~RA~~l~gi~~~~~ls~~gR~~~~~~~~~~G~~~~~~i~GRv~lDl 273 (903)
T 3qex_A 199 MEYLNFWQQKTP---V-ILTGWNVESFAI-PYVYNRIKNIFGESTAKRLSPHRKTRVKVIENMYGSREIITLFGISVLDY 273 (903)
T ss_dssp HHHHHHHHHTCC---S-EEECSSTTTTHH-HHHHHHHHHHHCHHHHGGGSTTSCEEEEEEEETTEEEEEEEETTCEECCH
T ss_pred HHHHHHHHHhCC---C-EEEecCCccCCH-HHHHHHHHHHcCCcccccccccccccccchhhhcCCceeEEEeCeEEeeH
Confidence 999999986421 2 3454 44 7998 788877776 57531 1111 125688
Q ss_pred HHHHHHh-c-CCCCCCHHHHHHHc-CCCCCCCCCc----------------HHHHHHHHHHHHHH
Q 017267 227 KVPFHEV-F-GGVRCNLKEAVEMA-GLAWQGRAHC----------------GLDDAKNTARLLAL 272 (374)
Q Consensus 227 ~~l~~~~-~-~~~~~~L~~l~~~l-gI~~~g~~Hr----------------ALdDA~atA~l~~~ 272 (374)
..+++.+ + ...+++|+++++++ |..-. ..|. .+.||..|.+|+.+
T Consensus 274 ~~~~k~~~~~~l~SYsLd~VA~~lLg~~K~-d~~~~I~~~~~~d~~~L~~Ycl~Da~Lt~~L~~K 337 (903)
T 3qex_A 274 IDLYKKFSFTNQPSYSLDYISEFELNVGKL-KYDGPISKLRESNHQRYISYNIIAVYRVLQIDAK 337 (903)
T ss_dssp HHHHHHHSCCCCSCCCHHHHHHHHHCCCCC-CCSSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCccCcCCCCHHHHHHHHcCCCcc-ccHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHH
Confidence 8888763 2 45689999998775 43322 1121 16799999999977
No 34
>2hpi_A DNA polymerase III alpha subunit; POL-beta-like nucleotidyltransferase fold, transferase; HET: DNA; 3.00A {Thermus aquaticus} PDB: 2hpm_A* 3e0d_A*
Probab=96.51 E-value=0.00076 Score=75.88 Aligned_cols=46 Identities=4% Similarity=-0.188 Sum_probs=41.6
Q ss_pred cccCCCCCCChhhHHHHHHh--cCCcceeecccC---------------CCCccccccccccc
Q 017267 38 ELKDDTIVHPGGDAGESIHQ--LSSEFVEYSNEF---------------YNNPTYQHDFGSWS 83 (374)
Q Consensus 38 ~~~~~~~~~~~~~~~~~a~~--~g~~a~aitd~~---------------~~k~~y~~e~~~~~ 83 (374)
..|-+||..+++++|++|++ +|++|||||||+ ++|||.|+|++...
T Consensus 15 ~~SlLDG~~~~~elv~~A~~~~~G~~alAITDH~~~~G~~~f~~~a~~~gIk~I~G~E~~~~~ 77 (1220)
T 2hpi_A 15 QFSLLDGAAKLQDLLKWVKETTPEDPALAMTDHGNLFGAVEFYKKATAMGVKPIIGYEAYVAA 77 (1220)
T ss_dssp TTSTTTCCCCHHHHHHHHHHHCCSSCEEEEEEETCCTTHHHHHHHHHTTTCEEEEEEEEEEES
T ss_pred CCCcccccCCHHHHHHHHHhccCCCCEEEEEecCcchhHHHHHHHHHHcCCeEEEEEEEEEec
Confidence 45677999999999999999 999999999998 68999999998754
No 35
>4dfk_A DNA polymerase I, thermostable; DNA polymerase, transferase-DNA complex; HET: DNA DOC 0L5; 1.65A {Thermus aquaticus} PDB: 1jxe_A* 3ktq_A* 3lwl_A* 3lwm_A* 3m8s_A* 3m8r_A* 3oju_A* 3rr7_A* 3rr8_A* 3rrg_A* 3ojs_A* 3rtv_A* 3sv3_A* 3sv4_A* 3syz_A* 3sz2_A* 3t3f_A* 4df4_A* 4df8_A* 4dfj_A* ...
Probab=96.50 E-value=0.0092 Score=61.95 Aligned_cols=118 Identities=13% Similarity=0.070 Sum_probs=83.5
Q ss_pred cEEEEEEeeCCCCCCCCCCCceEEEceEEEEcCCCeEEEEEEEeecCCCCCCCCcchhhhcCCChHHHhCCCCHHHHHHH
Q 017267 97 YFVVIDFEATCDKDKNPYPQEIIEFPSVIVSSVTGQLEACFQTYVRPTCNQLLSDFCKDLTGIQQIQVDRGVTLSEALLR 176 (374)
Q Consensus 97 ~~VVfDlETTGl~~~~~~~deIIEIGAVkvd~~~G~iidsF~~lVkP~~~p~Is~~~~~LTGIt~e~v~~ap~~~eVl~e 176 (374)
..|++|+|+.+. ++...+++-|+.. . .|+. | +| . +++..
T Consensus 11 ~~valDtE~~~~---~~~~a~Lvgi~la--~--~~~a---~--~i------------------~-----------~~l~~ 49 (540)
T 4dfk_A 11 EGAFVGFVLSRK---EPMWADLLALAAA--R--GGRV---H--RA------------------P-----------EPYKA 49 (540)
T ss_dssp TTCEEEEEESSS---CTTTCCEEEEEEE--E--TTEE---E--EC------------------S-----------SHHHH
T ss_pred CceEEEEEecCC---ccCcccEEEEEEE--c--CCEE---E--Ee------------------h-----------hhHHH
Confidence 469999999986 4566777655433 1 3332 2 11 0 36788
Q ss_pred HHHHHhhcCCCCccEEEEEcCcchHHHHHHHHHHHcCCCCCCCCCceeehHHHHHHhcCCCCCCHHHHHHHcCCCCCCCC
Q 017267 177 HDKWLENKGIKNTNFAVVTWSNWDCRVMLESECRFKKIWKPPYFNRWINLKVPFHEVFGGVRCNLKEAVEMAGLAWQGRA 256 (374)
Q Consensus 177 f~~fl~~~~l~~~n~~vv~~g~fDl~~fL~~~~~~~gi~~P~~~~~~iDt~~l~~~~~~~~~~~L~~l~~~lgI~~~g~~ 256 (374)
|.+|+++... |+||+.||+ . ++|+..+ .++||......+.+. +++|+.++++|...+ .
T Consensus 50 l~~~l~d~~k------V~hn~K~Dl-~-------~~Gi~~~----~~fDT~laAyLL~p~-~~~L~~La~~yl~~~---g 107 (540)
T 4dfk_A 50 LRDLKEARGL------LAKDLSVLA-L-------REGLGLP----PGDDPMLLAYLLDPS-NTTPEGVARRYGGEW---T 107 (540)
T ss_dssp HTTCSSBCST------THHHHHHHH-H-------HTTCCCC----BCCCHHHHHHHHCTT-CCCHHHHHHHHTSCC---C
T ss_pred HHHHHcCCCE------EEeccHHHH-H-------HcCCCCC----cceeHHHHHHHhCCC-CCCHHHHHHHHhhhh---c
Confidence 9999987332 456678996 3 5788752 578998666655555 899999999886443 3
Q ss_pred CcHHHHHHHHHHHHHHHHHcc
Q 017267 257 HCGLDDAKNTARLLALLMHRG 277 (374)
Q Consensus 257 HrALdDA~atA~l~~~ll~~g 277 (374)
|+|..||.+|++|+..|.++.
T Consensus 108 k~a~~DA~~t~~L~~~L~~~L 128 (540)
T 4dfk_A 108 EEAGERAALSERLFANLWGRL 128 (540)
T ss_dssp SCHHHHHHHHHHHHHHHHHHT
T ss_pred cchHHHHHHHHHHHHHHHHHH
Confidence 789999999999999887766
No 36
>3k59_A POL II, DNA polymerase II; protein-DNA complex, DNA damage, DNA repair, DNA-binding; HET: DNA DOC DCP; 1.92A {Escherichia coli} PDB: 3k57_A* 3k58_A* 3k5l_A* 3k5m_A* 3k5n_A* 3k5o_A* 3maq_A* 1q8i_A*
Probab=95.66 E-value=0.22 Score=53.84 Aligned_cols=149 Identities=12% Similarity=0.079 Sum_probs=90.4
Q ss_pred cEEEEEEeeCCCCCCCCCCCceEEEceEEEEcCCCeEEEEEEEeecCCCCCCCCcchhhhcCCChHHHhCCCCHHHHHHH
Q 017267 97 YFVVIDFEATCDKDKNPYPQEIIEFPSVIVSSVTGQLEACFQTYVRPTCNQLLSDFCKDLTGIQQIQVDRGVTLSEALLR 176 (374)
Q Consensus 97 ~~VVfDlETTGl~~~~~~~deIIEIGAVkvd~~~G~iidsF~~lVkP~~~p~Is~~~~~LTGIt~e~v~~ap~~~eVl~e 176 (374)
..+.||+|+.+. .+|+.||.. + .+. +..-.+=.|.. . - .+.+..|..-++..+.|.+
T Consensus 154 rilsfDIE~~~~-------g~i~~I~~~--~--~~~--~~v~~l~~~~~-~-~--------~~~~~~V~~f~~E~~lL~~ 210 (786)
T 3k59_A 154 KWVSIDIETTRH-------GELYCIGLE--G--CGQ--RIVYMLGPENG-D-A--------SSLDFELEYVASRPQLLEK 210 (786)
T ss_dssp CEEEEEEEECTT-------SCEEEEEEE--E--TTE--EEEEEESSCCS-C-C--------TTCSSEEEEESSHHHHHHH
T ss_pred eEEEEEEEEcCC-------CCEEEEEec--C--CCC--CeEEEEecCCC-C-C--------CCCCceEEEeCCHHHHHHH
Confidence 589999999941 269998732 2 221 11112212221 1 0 1122234444578899999
Q ss_pred HHHHHhhcCCCCccEEEEEcC-cchHHHHHHHHHHHcCCCCCCCC------------------------CceeehHHHHH
Q 017267 177 HDKWLENKGIKNTNFAVVTWS-NWDCRVMLESECRFKKIWKPPYF------------------------NRWINLKVPFH 231 (374)
Q Consensus 177 f~~fl~~~~l~~~n~~vv~~g-~fDl~~fL~~~~~~~gi~~P~~~------------------------~~~iDt~~l~~ 231 (374)
|.+|+..... .+++.+|+ .||+ .+|..-++.+|++.. +. .-.+|+..+.+
T Consensus 211 f~~~i~~~dP---Dii~g~N~~~FD~-pyL~~Ra~~~~i~~~-lGR~~~~~~~~~~~~~~~~~~~~i~GRv~lDl~~~lk 285 (786)
T 3k59_A 211 LNAWFANYDP---DVIIGWNVVQFDL-RMLQKHAERYRLPLR-LGRDNSELEWREHGFKNGVFFAQAKGRLIIDGIEALK 285 (786)
T ss_dssp HHHHHHHHCC---SEEEESSTTTTHH-HHHHHHHHHHTCCCC-CBTTTBCCEEEECSSSTTCEEEECTTCEEEEHHHHHH
T ss_pred HHHHHHHcCC---CEEEecCCccCcH-HHHHHHHHHhCCCce-eccCCCcccccccccCCCceeEEEcCEEEEEhHHHHH
Confidence 9999997531 23333444 7998 899888888887631 10 11467777776
Q ss_pred H-hcCCCCCCHHHHHHHc-CCCCCC-CCC-------------------cHHHHHHHHHHHHHHH
Q 017267 232 E-VFGGVRCNLKEAVEMA-GLAWQG-RAH-------------------CGLDDAKNTARLLALL 273 (374)
Q Consensus 232 ~-~~~~~~~~L~~l~~~l-gI~~~g-~~H-------------------rALdDA~atA~l~~~l 273 (374)
. .+...+++|+++++++ |..-.. ..| -.+.||..+.+|+.++
T Consensus 286 ~~~~~l~SysL~~Va~~~Lg~~K~~~~~~~~~~eI~~~~~~~~~~L~~Y~l~Da~L~~~L~~kl 349 (786)
T 3k59_A 286 SAFWNFSSFSLETVAQELLGEGKSIDNPWDRMDEIDRRFAEDKPALATYNLKNCELVTQIFHKT 349 (786)
T ss_dssp HTTCCCSCCSHHHHHHHHHCCCCC-CCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccCCCCCCCHHHHHHHHhCCCCcccCccccHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHh
Confidence 4 3567789999999875 433211 111 1268999999998874
No 37
>3o0f_A Putative metal-dependent phosphoesterase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: AMP; 1.94A {Bifidobacterium adolescentis} PDB: 3e0f_A*
Probab=95.56 E-value=0.0052 Score=59.29 Aligned_cols=29 Identities=10% Similarity=-0.089 Sum_probs=27.5
Q ss_pred CCCCChhhHHHHHHhcCCcceeecccCCC
Q 017267 43 TIVHPGGDAGESIHQLSSEFVEYSNEFYN 71 (374)
Q Consensus 43 ~~~~~~~~~~~~a~~~g~~a~aitd~~~~ 71 (374)
||..+++++|++|++.|.++||||||..+
T Consensus 25 DG~~~~~elv~~A~~~Gl~~iaiTDH~~~ 53 (301)
T 3o0f_A 25 DGTETPRTLVEQARKLGLHGVAIADHDTT 53 (301)
T ss_dssp TCSSCHHHHHHHHHHTTCSEEEECCBTCC
T ss_pred CCCCCHHHHHHHHHHcCCCEEEEcCCCcc
Confidence 89999999999999999999999999954
No 38
>2yb1_A Amidohydrolase; HET: AMP; 1.90A {Chromobacterium violaceum} PDB: 2yb4_A
Probab=95.03 E-value=0.0098 Score=56.55 Aligned_cols=29 Identities=0% Similarity=-0.080 Sum_probs=27.4
Q ss_pred CCCCChhhHHHHHHhcCCcceeecccCCC
Q 017267 43 TIVHPGGDAGESIHQLSSEFVEYSNEFYN 71 (374)
Q Consensus 43 ~~~~~~~~~~~~a~~~g~~a~aitd~~~~ 71 (374)
||..++++++++|++.|.++||||||..+
T Consensus 14 Dg~~~~~elv~~A~~~Gl~~iaiTDH~~~ 42 (292)
T 2yb1_A 14 DGALTPTEVIDRAAARAPALLALTDHDCT 42 (292)
T ss_dssp TCSSCHHHHHHHHHTTCCSEEEECCBTCC
T ss_pred CCCCCHHHHHHHHHHCCCCEEEEecCCcc
Confidence 89999999999999999999999999854
No 39
>3saf_A Exosome component 10; exoribonuclease, RNA exosome, hydrolase; 2.50A {Homo sapiens} PDB: 3sag_A 3sah_A 2cpr_A
Probab=93.89 E-value=0.77 Score=46.13 Aligned_cols=93 Identities=10% Similarity=0.069 Sum_probs=60.5
Q ss_pred HHHHHHHHhhcCCCCccEEEEEcCcchHHHHHHHHHHHcCCCCCCCCCceeehHHHHHHhcCCCCCCHHHHHHHc-CCCC
Q 017267 174 LLRHDKWLENKGIKNTNFAVVTWSNWDCRVMLESECRFKKIWKPPYFNRWINLKVPFHEVFGGVRCNLKEAVEMA-GLAW 252 (374)
Q Consensus 174 l~ef~~fl~~~~l~~~n~~vv~~g~fDl~~fL~~~~~~~gi~~P~~~~~~iDt~~l~~~~~~~~~~~L~~l~~~l-gI~~ 252 (374)
+..|.+++.+..+ .-|.|++.+|+ ..|. +.+|+.. ..++||.. ...+++..+++|+.+++++ |+..
T Consensus 171 l~~L~~lL~dp~i----~KV~H~~k~Dl-~~L~---~~~Gi~~----~~~fDT~l-Aa~lL~~~~~gL~~Lv~~~Lg~~l 237 (428)
T 3saf_A 171 MYILNESLTDPAI----VKVFHGADSDI-EWLQ---KDFGLYV----VNMFDTHQ-AARLLNLGRHSLDHLLKLYCNVDS 237 (428)
T ss_dssp GGGGHHHHTCTTS----EEEESSCHHHH-HHHH---HHHCCCC----SSEEEHHH-HHHHTTCSCCSHHHHHHHHHCCCC
T ss_pred HHHHHHHHcCCCc----eEEEeehHHHH-HHHH---HHcCCCc----Cceeechh-HHHHhCCCCCCHHHHHHHHcCCCC
Confidence 3456667776532 23667789997 5553 3468764 35789974 4445565568999998654 7654
Q ss_pred CCC---------------CCcHHHHHHHHHHHHHHHHHccCc
Q 017267 253 QGR---------------AHCGLDDAKNTARLLALLMHRGFK 279 (374)
Q Consensus 253 ~g~---------------~HrALdDA~atA~l~~~ll~~g~~ 279 (374)
... .+-|..||..+.+|+..|..+..+
T Consensus 238 ~K~~~~sdW~~rpLs~~q~~YAA~DA~~ll~L~~~L~~~L~~ 279 (428)
T 3saf_A 238 NKQYQLADWRIRPLPEEMLSYARDDTHYLLYIYDKMRLEMWE 279 (428)
T ss_dssp CCTTTTSCTTCSSCCHHHHHHHHHHHHTHHHHHHHHHHHHHH
T ss_pred CccccccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 211 134678999999999888766443
No 40
>2py5_A DNA polymerase; protein-DNA complex, replication, transferase/DNA complex; HET: DNA; 1.60A {Bacillus phage PHI29} SCOP: c.55.3.5 e.8.1.1 PDB: 1xhz_A* 1xhx_A* 2ex3_A* 1xi1_A* 2pyj_A* 2pyl_A* 2pzs_A*
Probab=93.13 E-value=0.18 Score=52.60 Aligned_cols=130 Identities=9% Similarity=-0.002 Sum_probs=77.6
Q ss_pred ccEEEEEEeeCCCCCCCCCCCceEEEceEEEEcCCCeEEEEEEEeecCCCCCCCCcchhhhcCCChHHHhCCCCHHHHHH
Q 017267 96 QYFVVIDFEATCDKDKNPYPQEIIEFPSVIVSSVTGQLEACFQTYVRPTCNQLLSDFCKDLTGIQQIQVDRGVTLSEALL 175 (374)
Q Consensus 96 ~~~VVfDlETTGl~~~~~~~deIIEIGAVkvd~~~G~iidsF~~lVkP~~~p~Is~~~~~LTGIt~e~v~~ap~~~eVl~ 175 (374)
+.+++||+||+. ++..+.++-+|. ++. + ....|.. .. . +.
T Consensus 6 ~~i~~~D~Et~~----d~~~~~~~~i~~--~~~--~-~~~~~~~-------------------~~--------~----l~ 45 (575)
T 2py5_A 6 RKMYSCAFETTT----KVEDCRVWAYGY--MNI--E-DHSEYKI-------------------GN--------S----LD 45 (575)
T ss_dssp CCEEEEEEEECC----BTTBCCEEEEEE--EES--S-CTTCEEE-------------------ES--------C----HH
T ss_pred ceEEEEEEEeec----CCCCCceEEEEE--EeC--C-ceEEEEe-------------------ch--------h----HH
Confidence 468999999985 455667888775 331 1 1111110 00 1 46
Q ss_pred HHHHHHhhcCCCCccEEEEEcCcchHHHHHHHHHHHcCCC-----CCCC-------CC-------------------cee
Q 017267 176 RHDKWLENKGIKNTNFAVVTWSNWDCRVMLESECRFKKIW-----KPPY-------FN-------------------RWI 224 (374)
Q Consensus 176 ef~~fl~~~~l~~~n~~vv~~g~fDl~~fL~~~~~~~gi~-----~P~~-------~~-------------------~~i 224 (374)
+|++|+.... ..+++||..||. .||.+.+...|+. .|.. .. .++
T Consensus 46 ~fi~~~~~~~----~~i~~hNl~FD~-~~l~~~~~~~~~~~~~~~~p~~~~~~i~r~~~~~~~~i~~~~~~k~~~~i~~~ 120 (575)
T 2py5_A 46 EFMAWVLKVQ----ADLYFHNLKFAG-AFIINWLERNGFKWSADGLPNTYNTIISRMGQWYMIDICLGYKGKRKIHTVIY 120 (575)
T ss_dssp HHHHHHHHHC----CEEEETTHHHHH-HHHHHHHHHTTCEECTTCCTTEEEEEEBTTCCEEEEEEEEEEETTEEEEEEEE
T ss_pred HHHHHHHHcC----CEEEEEChhhhH-HHHHHHHHHhCcccccccccccccceeccCCeEEEEEEEEecCCCceEEEEEE
Confidence 7777887542 235667889997 7888888887521 1100 00 122
Q ss_pred ehHHHHHHhcCCCCCCHHHHHHHcCCCCCC---------------C---CCcHHHHHHHHHHHHHHHHHcc
Q 017267 225 NLKVPFHEVFGGVRCNLKEAVEMAGLAWQG---------------R---AHCGLDDAKNTARLLALLMHRG 277 (374)
Q Consensus 225 Dt~~l~~~~~~~~~~~L~~l~~~lgI~~~g---------------~---~HrALdDA~atA~l~~~ll~~g 277 (374)
|+..+ -+.+|+.+++.|+++... . .+-.+.|++.|++++...+...
T Consensus 121 Ds~~~-------~~~SL~~~a~~f~~~~~K~~~py~~~~~~~~~~~~~~~~Y~~~Dv~ll~~i~~~~f~~~ 184 (575)
T 2py5_A 121 DSLKK-------LPFPVKKIAKDFKLTVLKGDIDYHKERPVGYKITPEEYAYIKNDIQIIAEALLIQFKQG 184 (575)
T ss_dssp EHHHH-------SCSCHHHHHHHTTCCCCSSCCCTTSCCCTTCCCCHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred EhHhh-------hhhhHHHHHHHhCCcccCCccCccccCcccchhhHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33322 147999999999986210 0 1224789999999988765543
No 41
>3pv8_A DNA polymerase I; DNA polymerase I, protein-DNA complex, thymine-adenine, CLOS conformation; HET: DNA 2DT D3T; 1.52A {Geobacillus kaustophilus} PDB: 3px0_A* 3px4_A* 3px6_A* 3thv_A* 3ti0_A* 4dse_A* 4dsf_A* 4ds4_A* 4dqp_A* 4dqi_A* 4ds5_A* 4e0d_A* 4dqr_A* 4dqq_A* 3tan_A* 3tap_A* 3taq_A* 3tar_A* 4dqs_A* 3hp6_A* ...
Probab=92.90 E-value=0.12 Score=54.13 Aligned_cols=133 Identities=16% Similarity=0.015 Sum_probs=83.4
Q ss_pred ccEEEEEEeeCCCCCCCCCCCceEEEceEEEEcCCCeEEEEEEEeecCCCCCCCCcchhhhcCCChHHHhCCCCHHHHHH
Q 017267 96 QYFVVIDFEATCDKDKNPYPQEIIEFPSVIVSSVTGQLEACFQTYVRPTCNQLLSDFCKDLTGIQQIQVDRGVTLSEALL 175 (374)
Q Consensus 96 ~~~VVfDlETTGl~~~~~~~deIIEIGAVkvd~~~G~iidsF~~lVkP~~~p~Is~~~~~LTGIt~e~v~~ap~~~eVl~ 175 (374)
..-..+|+||++. ++...+++-|+.. . .++ ..|| |.. + .+++.
T Consensus 29 ~~~~aldtE~~~~---~~~~a~Lvgisla--~--~~~-----a~yI-p~~-----------~-------------~~~l~ 71 (592)
T 3pv8_A 29 ADKAALVVEVVEE---NYHDAPIVGIAVV--N--EHG-----RFFL-RPE-----------T-------------ALADP 71 (592)
T ss_dssp CSEEEEEEECCSS---SCTTCCCCEEEEE--E--TTE-----EEEE-CHH-----------H-------------HTTCH
T ss_pred ccCcEEEEEEcCC---ccCcccEEEEEEE--c--CCc-----eEEE-ccc-----------h-------------hhHHH
Confidence 3457899999986 4667777655433 2 122 2344 210 0 23556
Q ss_pred HHHHHHhhcCCCCccEEEEEcCcchHHHHHHHHHHHcCCCCCCCCCceeehHHHHHHhcC-CCCCCHHHHHHHc-CCCCC
Q 017267 176 RHDKWLENKGIKNTNFAVVTWSNWDCRVMLESECRFKKIWKPPYFNRWINLKVPFHEVFG-GVRCNLKEAVEMA-GLAWQ 253 (374)
Q Consensus 176 ef~~fl~~~~l~~~n~~vv~~g~fDl~~fL~~~~~~~gi~~P~~~~~~iDt~~l~~~~~~-~~~~~L~~l~~~l-gI~~~ 253 (374)
.|..|+++..+ ..|+|++.+|+ .+|. ++|+..+ ..+.||.-....+-+ ..+++|++++++| |+...
T Consensus 72 ~Lk~lLed~~i----~KV~hn~K~Dl-~vL~----~~Gi~l~---g~~fDTmLAAYLL~p~~~~~~L~~La~~yLg~~l~ 139 (592)
T 3pv8_A 72 QFVAWLGDETK----KKSMFDSKRAA-VALK----WKGIELC---GVSFDLLLAAYLLDPAQGVDDVAAAAKMKQYEAVR 139 (592)
T ss_dssp HHHHHHTCTTS----EEEESSHHHHH-HHHH----HTTCCCC---CEEEEHHHHHHHHCGGGCCCSHHHHHGGGTCCSSC
T ss_pred HHHHHHhCCCC----eEEEechHHHH-HHHH----HcCCCCC---CccchHHHHHHHcCCCCCCCCHHHHHHHHcCCCCc
Confidence 78889987532 35678889997 5664 5788763 457899744433333 3479999999766 54321
Q ss_pred --------C----------CCCcHHHHHHHHHHHHHHHHHcc
Q 017267 254 --------G----------RAHCGLDDAKNTARLLALLMHRG 277 (374)
Q Consensus 254 --------g----------~~HrALdDA~atA~l~~~ll~~g 277 (374)
| ..+.|..||..|.+|+..|..+.
T Consensus 140 ~~ee~~gkg~~~~~~~~e~~~~YAa~DA~~l~~L~~~L~~~L 181 (592)
T 3pv8_A 140 PDEAVYGKGAKRAVPDEPVLAEHLVRKAAAIWELERPFLDEL 181 (592)
T ss_dssp CHHHHHCSGGGCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHhcCccccccCccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 01446789999999988776553
No 42
>3e38_A Two-domain protein containing predicted PHP-like dependent phosphoesterase; structural genomics; 2.20A {Bacteroides vulgatus atcc 8482}
Probab=92.14 E-value=0.052 Score=53.18 Aligned_cols=31 Identities=0% Similarity=-0.196 Sum_probs=28.0
Q ss_pred cccCCCCCCChhhHHHHHHhcCCcceeecccCC
Q 017267 38 ELKDDTIVHPGGDAGESIHQLSSEFVEYSNEFY 70 (374)
Q Consensus 38 ~~~~~~~~~~~~~~~~~a~~~g~~a~aitd~~~ 70 (374)
..| ||..++++++++|++.|.++||||||..
T Consensus 28 ~~S--Dg~~~~~elv~~A~~~Gl~~iaiTDH~~ 58 (343)
T 3e38_A 28 VFS--DGLVWPTVRVDEAYRDGLDAISLTEHIE 58 (343)
T ss_dssp TTT--TCSBCHHHHHHHHHHTTCSEECCEEESS
T ss_pred CCC--CCCCCHHHHHHHHHHcCCCEEEECCCCc
Confidence 345 8999999999999999999999999953
No 43
>2a1r_A Poly(A)-specific ribonuclease PARN; DEDD, nuclease domain, hydrolase-RNA complex; 2.60A {Homo sapiens} PDB: 2a1s_A
Probab=91.89 E-value=0.68 Score=46.53 Aligned_cols=103 Identities=14% Similarity=0.041 Sum_probs=66.5
Q ss_pred HHHhCCCCHHHHHHHHHHHHhhcCCCCccEEEEEcCcchHHHHHHHHHHHcCCCCCC-----------CCCceeehHHHH
Q 017267 162 IQVDRGVTLSEALLRHDKWLENKGIKNTNFAVVTWSNWDCRVMLESECRFKKIWKPP-----------YFNRWINLKVPF 230 (374)
Q Consensus 162 e~v~~ap~~~eVl~ef~~fl~~~~l~~~n~~vv~~g~fDl~~fL~~~~~~~gi~~P~-----------~~~~~iDt~~l~ 230 (374)
+.+..+.-|..|++.+.+ + ++.+|.||.-.|+ -++-..+ .| ++|. ++..++||+.++
T Consensus 262 ~~l~~~~Gfr~V~~~L~~----s----~KpiVGHN~llDl-~~l~~~F--~~-pLP~~~~eFk~~i~~lFP~i~DTK~la 329 (430)
T 2a1r_A 262 EELNDAVGFSRVIHAIAN----S----GKLVIGHNMLLDV-MHTVHQF--YC-PLPADLSEFKEMTTCVFPRLLDTKLMA 329 (430)
T ss_dssp HHHHTTSBTHHHHHHHHH----H----CCEEEESSCHHHH-HHHHHHH--TC-CCCSSHHHHHHHHHHHCSSEEEHHHHH
T ss_pred HHHHhhhhHHHHHHHHHh----C----CCceEechhHHHH-HHHHHHh--cc-CCCCCHHHHHHHHHHHCCceeehHHhh
Confidence 346667777777776654 2 3456777787898 5665433 33 4442 123578997766
Q ss_pred HHh-cC--CCCCCHHHHHHHcCCC-C-----------------CCCCCcHHHHHHHHHHHHHHHHHc
Q 017267 231 HEV-FG--GVRCNLKEAVEMAGLA-W-----------------QGRAHCGLDDAKNTARLLALLMHR 276 (374)
Q Consensus 231 ~~~-~~--~~~~~L~~l~~~lgI~-~-----------------~g~~HrALdDA~atA~l~~~ll~~ 276 (374)
... ++ ....+|..+.+.+.-. + .+..|.|=+||..|+.+|.+|...
T Consensus 330 ~~~~~~~~~~~~sL~~l~~~l~~~~~~~p~i~~~~~~~~y~~~~~~~HeAGyDa~mTG~vFi~l~~~ 396 (430)
T 2a1r_A 330 STQPFKDIINNTSLAELEKRLKETPFNPPKVESAEGFPSYDTASEQLHEAGYDAYITGLCFISMANY 396 (430)
T ss_dssp TSTTTTTTCSCCSHHHHHHHTTSTTCCCCCEEECTTCCCC-----CCCCHHHHHHHHHHHHHHHHHH
T ss_pred hccchhhccCCCCHHHHHHHHHhCCCCCCeeecCCCccccccCCCCccchHHHHHHHHHHHHHHHHH
Confidence 432 11 2346899998876421 1 235699999999999999999875
No 44
>2yxo_A Histidinol phosphatase; metal-dependent, hydrolase; 1.60A {Thermus thermophilus} PDB: 2yz5_A 2z4g_A
Probab=90.16 E-value=0.13 Score=46.96 Aligned_cols=34 Identities=9% Similarity=-0.161 Sum_probs=30.0
Q ss_pred cccCCCCCCChhhHHHHHHhcCCcceeecccCCCC
Q 017267 38 ELKDDTIVHPGGDAGESIHQLSSEFVEYSNEFYNN 72 (374)
Q Consensus 38 ~~~~~~~~~~~~~~~~~a~~~g~~a~aitd~~~~k 72 (374)
..|+ ||..+++++|++|++-|.++||||||....
T Consensus 9 ~~S~-DG~~~~ee~v~~A~~~Gl~~iaiTDH~~~~ 42 (267)
T 2yxo_A 9 PLCG-HAEGHPEAYLEEARAKGLKGVVFTDHSPMP 42 (267)
T ss_dssp GGGS-SCCSCHHHHHHHHHHTTCSEEEEEEECCCC
T ss_pred CCCC-CCCCCHHHHHHHHHHcCCCEEEEcCCCCCC
Confidence 3453 899999999999999999999999999654
No 45
>1m65_A Hypothetical protein YCDX; structural genomics, beta-alpha-barrel, metallo-enzyme, STRU function project, S2F, unknown function; 1.57A {Escherichia coli} SCOP: c.6.3.1 PDB: 1m68_A 1pb0_A
Probab=89.60 E-value=0.14 Score=46.28 Aligned_cols=31 Identities=6% Similarity=-0.124 Sum_probs=28.0
Q ss_pred ccCCCCCCChhhHHHHHHhcCCcceeecccCC
Q 017267 39 LKDDTIVHPGGDAGESIHQLSSEFVEYSNEFY 70 (374)
Q Consensus 39 ~~~~~~~~~~~~~~~~a~~~g~~a~aitd~~~ 70 (374)
.|| ||..++++++++|++-|.++|+||||..
T Consensus 12 ~Sd-~g~~~~~e~v~~A~~~Gl~~iaiTDH~~ 42 (245)
T 1m65_A 12 AST-HAYSTLSDYIAQAKQKGIKLFAITDHGP 42 (245)
T ss_dssp TST-TCCCCHHHHHHHHHHHTCCEEEEEEECT
T ss_pred CCC-CCCCcHHHHHHHHHHCCCCEEEECCCCC
Confidence 455 7888999999999999999999999986
No 46
>1vk0_A Hypothetical protein; homohexamer, AT5G06450, struc genomics, protein structure initiative, center for eukaryot structural genomics, CESG; 2.10A {Arabidopsis thaliana} SCOP: c.55.3.5 PDB: 2q3s_A
Probab=89.14 E-value=0.73 Score=41.64 Aligned_cols=90 Identities=13% Similarity=-0.059 Sum_probs=61.6
Q ss_pred HHHHHHHHhhcCCCCccEEEEEcCcchHHHHHHHHHHHcCCCCCCCCCceeehHHHHHHhcCC---CCCCHHHHHHH-cC
Q 017267 174 LLRHDKWLENKGIKNTNFAVVTWSNWDCRVMLESECRFKKIWKPPYFNRWINLKVPFHEVFGG---VRCNLKEAVEM-AG 249 (374)
Q Consensus 174 l~ef~~fl~~~~l~~~n~~vv~~g~fDl~~fL~~~~~~~gi~~P~~~~~~iDt~~l~~~~~~~---~~~~L~~l~~~-lg 249 (374)
+..|.+|+.+..+ .-|.|....|+ ..|.+ .+|+.. .+++||..++...+|. .+.+|..+++. +|
T Consensus 97 L~~L~~lL~d~~i----~Kvg~~~~~D~-~~L~~---~~g~~~----~~~~Dl~~la~~~lg~~~~~~~gL~~Lv~~~lg 164 (206)
T 1vk0_A 97 LKDLYRFFASKFV----TFVGVQIEEDL-DLLRE---NHGLVI----RNAINVGKLAAEARGTLVLEFLGTRELAHRVLW 164 (206)
T ss_dssp GHHHHHHHTCSSS----EEEESSCHHHH-HHHHH---HHCCCC----SSEEEHHHHHHHHHTCGGGGGCCHHHHHHHHHC
T ss_pred HHHHHHHhcCCCc----eEEEeccHHHH-HHHHH---hcCCCc----CCeeeHHHHHHHHcCCCCCCCccHHHHHHHHhC
Confidence 4457778877532 12344568898 55643 457653 4799998887766663 46899998864 57
Q ss_pred CCC-CC--------------CCCcHHHHHHHHHHHHHHHHH
Q 017267 250 LAW-QG--------------RAHCGLDDAKNTARLLALLMH 275 (374)
Q Consensus 250 I~~-~g--------------~~HrALdDA~atA~l~~~ll~ 275 (374)
+++ .. +-+-|..||..+.+||.+|.+
T Consensus 165 ~~lK~k~~~~SdW~~pLs~~Qi~YAA~Da~~l~~l~~~L~~ 205 (206)
T 1vk0_A 165 SDLGQLDSIEAKWEKAGPEEQLEAAAIEGWLIVNVWDQLSD 205 (206)
T ss_dssp CCCHHHHHHHHTGGGSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcCCCCCcccCCCCCcCCHHHHHHHHHHHHHHHHHHHHHHc
Confidence 766 10 236689999999999999865
No 47
>2anu_A Hypothetical protein TM0559; predicted metal-dependent phosphoesterase (PHP famil structural genomics, joint center for structural genomics; 2.40A {Thermotoga maritima} SCOP: c.6.3.1
Probab=89.06 E-value=0.13 Score=47.54 Aligned_cols=27 Identities=11% Similarity=0.137 Sum_probs=26.3
Q ss_pred CCCCChhhHHHHHHhcCCcceeecccC
Q 017267 43 TIVHPGGDAGESIHQLSSEFVEYSNEF 69 (374)
Q Consensus 43 ~~~~~~~~~~~~a~~~g~~a~aitd~~ 69 (374)
||..++++++++|++.|.+.|+||||.
T Consensus 32 Dg~~t~ee~v~~A~~~Gl~~i~iTDH~ 58 (255)
T 2anu_A 32 DGHLPLGEVVDLFGKHGVDVVSITDHI 58 (255)
T ss_dssp TCSSCHHHHHHHHHHTTCSEEEEEEEE
T ss_pred CCCCCHHHHHHHHHHCCCCEEEEcCCC
Confidence 899999999999999999999999997
No 48
>1yt3_A Ribonuclease D, RNAse D; exoribonuclease, exonuclease, hydrolase, tRNA processing, hydrolase,translation; 1.60A {Escherichia coli} SCOP: a.60.8.3 a.60.8.3 c.55.3.5
Probab=85.53 E-value=4.2 Score=39.53 Aligned_cols=92 Identities=13% Similarity=0.030 Sum_probs=60.6
Q ss_pred HHHHHHHHhhcCCCCccEEEEEcCcchHHHHHHHHHHHcCCCCCCCCCceeehHHHHHHhcCCC-CCCHHHHHHHc-CCC
Q 017267 174 LLRHDKWLENKGIKNTNFAVVTWSNWDCRVMLESECRFKKIWKPPYFNRWINLKVPFHEVFGGV-RCNLKEAVEMA-GLA 251 (374)
Q Consensus 174 l~ef~~fl~~~~l~~~n~~vv~~g~fDl~~fL~~~~~~~gi~~P~~~~~~iDt~~l~~~~~~~~-~~~L~~l~~~l-gI~ 251 (374)
+..|.+++.+..+ .-|.|++.+|+ .+|.. .+|+.. ..++||.... .+.+.. +++|+.++++| |+.
T Consensus 63 ~~~L~~ll~d~~i----~Kv~h~~k~Dl-~~L~~---~~Gi~~----~~~fDt~lAa-~lL~~~~~~~L~~L~~~~l~~~ 129 (375)
T 1yt3_A 63 WSPLKAILRDPSI----TKFLHAGSEDL-EVFLN---VFGELP----QPLIDTQILA-AFCGRPMSWGFASMVEEYSGVT 129 (375)
T ss_dssp CHHHHHHHHCTTS----EEEESSCHHHH-HHHHH---HHSSCC----SSEEEHHHHH-HHTTCCTTCCHHHHHHHHHCCC
T ss_pred hHHHHHHHcCCCc----eEEEeeHHHHH-HHHHH---HcCCCC----CcEEEcHHHH-HHcCCCCChhHHHHHHHHcCCC
Confidence 3557778877532 23667789997 56643 367764 2688997544 444543 78999999877 765
Q ss_pred CCCC---------C------CcHHHHHHHHHHHHHHHHHccC
Q 017267 252 WQGR---------A------HCGLDDAKNTARLLALLMHRGF 278 (374)
Q Consensus 252 ~~g~---------~------HrALdDA~atA~l~~~ll~~g~ 278 (374)
.... . +-|..||..+..|+..|.++..
T Consensus 130 l~K~~~~sdw~~rpL~~~q~~YAa~Da~~l~~L~~~L~~~L~ 171 (375)
T 1yt3_A 130 LDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETE 171 (375)
T ss_dssp CCCTTTTSCTTSSSCCHHHHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred CCCCcccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4211 1 2266899999999988876643
No 49
>2e6m_A Werner syndrome ATP-dependent helicase homolog; APO form, hydrolase; 2.00A {Mus musculus} PDB: 2e6l_A 2fby_A 2fbv_A 2fbx_A 2fbt_A 2fc0_A*
Probab=82.82 E-value=4 Score=35.92 Aligned_cols=93 Identities=17% Similarity=-0.004 Sum_probs=59.4
Q ss_pred HHHHHHHhhcCCCCccEEEEEcCcchHHHHHHHHHHHcCCCCCCCCCceeehHHHHHHhcC-CCCCCHHHHHHHc-CCCC
Q 017267 175 LRHDKWLENKGIKNTNFAVVTWSNWDCRVMLESECRFKKIWKPPYFNRWINLKVPFHEVFG-GVRCNLKEAVEMA-GLAW 252 (374)
Q Consensus 175 ~ef~~fl~~~~l~~~n~~vv~~g~fDl~~fL~~~~~~~gi~~P~~~~~~iDt~~l~~~~~~-~~~~~L~~l~~~l-gI~~ 252 (374)
..|.+++.+..+ .-|.|+...|+ ..|.+ .+|+.. . .++|+..++..+.+ ..+++|+.+++.+ |...
T Consensus 86 ~~L~~lL~d~~i----~Kv~~~~k~D~-~~L~~---~~gi~~---~-~~fDlt~lAayll~~~~~~~L~~L~~~~l~~~~ 153 (208)
T 2e6m_A 86 QGLKMLLENKSI----KKAGVGIEGDQ-WKLLR---DFDVKL---E-SFVELTDVANEKLKCAETWSLNGLVKHVLGKQL 153 (208)
T ss_dssp HHHHHHHTCTTS----EEEESSHHHHH-HHHHH---HHCCCC---C-SEEEHHHHHHHHTTCCCCCCHHHHHHHHHSCBC
T ss_pred HHHHHHhcCCCc----eEEEEeeHHHH-HHHHH---HCCCCC---C-CEEEHHHHHHHHccCCCChhHHHHHHHHcCCCc
Confidence 456777877432 23556678886 55542 368764 2 38995456666554 3578999999877 6543
Q ss_pred C-----------C------CCCcHHHHHHHHHHHHHHHHHccCc
Q 017267 253 Q-----------G------RAHCGLDDAKNTARLLALLMHRGFK 279 (374)
Q Consensus 253 ~-----------g------~~HrALdDA~atA~l~~~ll~~g~~ 279 (374)
. . +.+-|..||.++.+|+..|.++..+
T Consensus 154 ~K~k~~~~s~W~~~~L~~~q~~YAa~Da~~~~~L~~~L~~~L~~ 197 (208)
T 2e6m_A 154 LKDKSIRCSNWSNFPLTEDQKLYAATDAYAGLIIYQKLGNLGDT 197 (208)
T ss_dssp CCCHHHHTSCTTSSSCCHHHHHHHHHHHHHHHHHHHHHHTCC--
T ss_pred CCCCCeeeCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhccch
Confidence 1 0 1133678999999999988776644
No 50
>3b0x_A DNA polymerase beta family (X family); structural genomics, riken structural genomics/proteomics in RSGI, polxc, PHP, DRP lyase; HET: DNA DGT; 1.36A {Thermus thermophilus} PDB: 3au2_A* 3au6_A* 3auo_A* 3b0y_A*
Probab=82.68 E-value=0.5 Score=49.07 Aligned_cols=30 Identities=3% Similarity=-0.050 Sum_probs=27.9
Q ss_pred CCCCChhhHHHHHHhcCCcceeecccCCCC
Q 017267 43 TIVHPGGDAGESIHQLSSEFVEYSNEFYNN 72 (374)
Q Consensus 43 ~~~~~~~~~~~~a~~~g~~a~aitd~~~~k 72 (374)
||..++++++++|+++|.++|+||||....
T Consensus 349 DG~~t~ee~v~~A~~~G~~~iaiTDH~~~~ 378 (575)
T 3b0x_A 349 DGQNTLEELWEAAKTMGYRYLAVTDHSPAV 378 (575)
T ss_dssp TCSCCHHHHHHHHHHTTCSEEEEEEECTTT
T ss_pred CCCCCHHHHHHHHHHCCCCEEEEcCCCCcc
Confidence 889999999999999999999999999654
No 51
>2hbj_A Exosome complex exonuclease RRP6; RNA metabolism, RNA surveillance, RNA processing, hydrolase, gene regulation; 2.10A {Saccharomyces cerevisiae} SCOP: a.60.8.4 c.55.3.5 PDB: 2hbk_A 2hbl_A* 2hbm_A*
Probab=81.81 E-value=5.1 Score=39.74 Aligned_cols=93 Identities=13% Similarity=0.058 Sum_probs=60.8
Q ss_pred HHHHHHHHhhcCCCCccEEEEEcCcchHHHHHHHHHHHcCCCCCCCCCceeehHHHHHHhcCCCCCCHHHHHHHc-CCCC
Q 017267 174 LLRHDKWLENKGIKNTNFAVVTWSNWDCRVMLESECRFKKIWKPPYFNRWINLKVPFHEVFGGVRCNLKEAVEMA-GLAW 252 (374)
Q Consensus 174 l~ef~~fl~~~~l~~~n~~vv~~g~fDl~~fL~~~~~~~gi~~P~~~~~~iDt~~l~~~~~~~~~~~L~~l~~~l-gI~~ 252 (374)
+..|.+++.+..+ .-|.|++.+|+ ..|.+ .+|+.. ..++||.. ...+++..+++|+.+++.| |+..
T Consensus 148 l~~L~~lL~d~~i----~KV~h~~k~Dl-~~L~~---~~Gi~~----~~~fDt~l-Aa~LL~~~~~~L~~L~~~~lg~~l 214 (410)
T 2hbj_A 148 LHILNEVFTNPSI----VKVFHGAFMDI-IWLQR---DLGLYV----VGLFDTYH-ASKAIGLPRHSLAYLLENFANFKT 214 (410)
T ss_dssp GGGGHHHHTCTTS----EEEESSCHHHH-HHHHH---HHCCCC----SSEEEHHH-HHHHHTCSCCSHHHHHHHHSCCCC
T ss_pred HHHHHHHHcCCCc----eEEEEehHHHH-HHHHH---HcCCCc----CCEEEcHH-HHHHhCCCccCHHHHHHHHcCCCC
Confidence 3456777776432 23667788997 55643 368764 23889974 4445555579999999887 6543
Q ss_pred CCC---------C------CcHHHHHHHHHHHHHHHHHccCc
Q 017267 253 QGR---------A------HCGLDDAKNTARLLALLMHRGFK 279 (374)
Q Consensus 253 ~g~---------~------HrALdDA~atA~l~~~ll~~g~~ 279 (374)
... . +-|..||..+.+|+..|..+..+
T Consensus 215 ~K~~~~sdW~~rpL~~~q~~YAa~Da~~ll~L~~~L~~~L~~ 256 (410)
T 2hbj_A 215 SKKYQLADWRIRPLSKPMTAAARADTHFLLNIYDQLRNKLIE 256 (410)
T ss_dssp CCTTTTSCTTCSSCCHHHHHHHHHHHHTHHHHHHHHHHHHHH
T ss_pred CccccccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 210 1 23678999999999888766543
No 52
>2w9m_A Polymerase X; SAXS, DNA repair, DNA polymerase, DNA replication; 2.46A {Deinococcus radiodurans}
Probab=78.16 E-value=0.92 Score=47.13 Aligned_cols=29 Identities=14% Similarity=0.045 Sum_probs=27.4
Q ss_pred CCCCChhhHHHHHHhcCCcceeecccCCC
Q 017267 43 TIVHPGGDAGESIHQLSSEFVEYSNEFYN 71 (374)
Q Consensus 43 ~~~~~~~~~~~~a~~~g~~a~aitd~~~~ 71 (374)
||..++++++++|++.|.++|+||||...
T Consensus 339 DG~~t~eemv~~A~~~Gl~~IaiTDH~~~ 367 (578)
T 2w9m_A 339 DGGASIREMAEATLTLGHEFLGTADHSRA 367 (578)
T ss_dssp TCSSCHHHHHHHHHHTTCSEEEECEEBTT
T ss_pred CCCCCHHHHHHHHHHCCCeEEEEcCCCCc
Confidence 79999999999999999999999999964
No 53
>3cym_A Uncharacterized protein BAD_0989; structural genomics, unknown function; 2.10A {Bifidobacterium adolescentis atcc 1570ORGANISM_TAXID}
Probab=69.98 E-value=13 Score=37.09 Aligned_cols=88 Identities=14% Similarity=0.021 Sum_probs=58.6
Q ss_pred HHHHHHHHhhcCCCCccEEEEEcCcchHHHHHHHHHHHcCCCCCCCCCceeehHHHHHHhcCCCCCCHHHHHHHc-CCCC
Q 017267 174 LLRHDKWLENKGIKNTNFAVVTWSNWDCRVMLESECRFKKIWKPPYFNRWINLKVPFHEVFGGVRCNLKEAVEMA-GLAW 252 (374)
Q Consensus 174 l~ef~~fl~~~~l~~~n~~vv~~g~fDl~~fL~~~~~~~gi~~P~~~~~~iDt~~l~~~~~~~~~~~L~~l~~~l-gI~~ 252 (374)
+..|.+++.+. ..|.|+...|+ .+|+ .+|+.. ...+||. +...+++..+++|+.+++.| |...
T Consensus 84 l~~L~~lL~d~------~KV~h~~k~Dl-~~L~----~~gi~~----~~~fDt~-lAa~lL~~~~~gL~~L~~~~lg~~~ 147 (440)
T 3cym_A 84 WNDFNRAVGDA------VWILHDSLQDL-PGFD----ELGMEP----QRLFDTE-IAARLLGLKRFGLAAVTEHFLGLTL 147 (440)
T ss_dssp HHHHHHHHTTC------EEEESSHHHHH-HHHH----HHTCCC----CEEEEHH-HHHHHTTCSSCSHHHHHHHHHCEEC
T ss_pred HHHHHHHHCCC------CEEEEcCHHHH-HHHH----HcCCcC----CceehHH-HHHHHhCCCCCCHHHHHHHHhCCCc
Confidence 45677777763 24667778887 5553 467764 2688995 55556654589999999888 6432
Q ss_pred C---------CCC------CcHHHHHHHHHHHHHHHHHcc
Q 017267 253 Q---------GRA------HCGLDDAKNTARLLALLMHRG 277 (374)
Q Consensus 253 ~---------g~~------HrALdDA~atA~l~~~ll~~g 277 (374)
. .+. +.|..||..+.+|+..|..+.
T Consensus 148 ~K~~~~sdw~~rpLs~~q~~YAa~Da~~Ll~L~~~L~~~L 187 (440)
T 3cym_A 148 AKEHSAADWSYRPLPRDWRNYAALDVELLIELETKMRAEL 187 (440)
T ss_dssp CCCCTTCCTTCSSCCHHHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred ccccccCCCcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 111 237789999999988876553
No 54
>3qy7_A Tyrosine-protein phosphatase YWQE; TIM barrel, polymerase and histindinol phosphatase(PHP)-like phosphatase, hydrolase; 1.62A {Bacillus subtilis} PDB: 3qy6_A
Probab=50.29 E-value=8.4 Score=35.72 Aligned_cols=28 Identities=4% Similarity=-0.092 Sum_probs=25.6
Q ss_pred CCCCChhh---HHHHHHhcCCcceeecccCC
Q 017267 43 TIVHPGGD---AGESIHQLSSEFVEYSNEFY 70 (374)
Q Consensus 43 ~~~~~~~~---~~~~a~~~g~~a~aitd~~~ 70 (374)
||..++++ ++++|.+-|.+.|++|||-.
T Consensus 14 dG~~~~~~sl~~~~~a~~~G~~~i~~T~H~~ 44 (262)
T 3qy7_A 14 DGAGDSADSIEMARAAVRQGIRTIIATPHHN 44 (262)
T ss_dssp SSCSSHHHHHHHHHHHHHTTCCEEECCCBSE
T ss_pred CCCCCHHHHHHHHHHHHHCCCCEEEECCCCC
Confidence 78888886 99999999999999999973
No 55
>1hy9_A Cocaine and amphetamine regulated transcript protein; cysteine knot, signaling protein; NMR {Homo sapiens} SCOP: g.3.17.1
Probab=50.15 E-value=6.7 Score=26.30 Aligned_cols=36 Identities=31% Similarity=0.693 Sum_probs=24.4
Q ss_pred CccceecCCCCCCccccccCCCCCCCCcccCCCCcccCCCccCccc
Q 017267 323 QYHPSCFCGVKSSKGMVRKPGPKQGSVFFGCGNWTVTRGARCHFFE 368 (374)
Q Consensus 323 ~~~~~c~cg~~~~~~~v~k~Gpn~Gr~fy~C~~~~~~~~~~c~~f~ 368 (374)
|..|+|.=|...- | +.||.-||. -.| ++++.|+||+
T Consensus 2 G~~P~Cd~GeqCA---v-RkG~Rigkl-C~C-----~rg~~Cn~fl 37 (41)
T 1hy9_A 2 GQVPMCDAGEQCA---V-RKGARIGKL-CDC-----PRGTSCNSFL 37 (41)
T ss_dssp CCCCBCCSSSCSE---E-ECSSSEEEC-CBC-----CTTCCBCTTT
T ss_pred CcCCcCCccchhh---h-hcccccchh-cCC-----CCCCcchhhh
Confidence 4456676665543 3 568888876 245 5789999996
No 56
>2wje_A CPS4B, tyrosine-protein phosphatase CPSB; capsule biogenesis/degradation, manganese, hydrolase, exopolysaccharide synthesis; 1.90A {Streptococcus pneumoniae} PDB: 2wjd_A 2wjf_A 3qy8_A
Probab=46.77 E-value=7.8 Score=35.08 Aligned_cols=29 Identities=3% Similarity=-0.198 Sum_probs=25.5
Q ss_pred CCCCCChh---hHHHHHHhcCCcceeecccCC
Q 017267 42 DTIVHPGG---DAGESIHQLSSEFVEYSNEFY 70 (374)
Q Consensus 42 ~~~~~~~~---~~~~~a~~~g~~a~aitd~~~ 70 (374)
-||..+.+ +++++|.+-|-+.|++|||..
T Consensus 17 ddg~~~~e~~~e~i~~A~~~Gi~~i~~TdH~~ 48 (247)
T 2wje_A 17 DDGPKSREESKALLAESYRQGVRTIVSTSHRR 48 (247)
T ss_dssp SSSCSSHHHHHHHHHHHHHTTEEEEECCCEEB
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCEEEECCCCC
Confidence 36777776 799999999999999999985
No 57
>1v77_A PH1877P, hypothetical protein PH1877; RNAse P protein, TIM-barrel, RNA binding protein; 1.80A {Pyrococcus horikoshii} SCOP: c.6.3.2 PDB: 2czv_A*
Probab=43.05 E-value=7 Score=34.95 Aligned_cols=22 Identities=23% Similarity=0.078 Sum_probs=21.0
Q ss_pred hhhHHHHHHhcCCcceeecccCC
Q 017267 48 GGDAGESIHQLSSEFVEYSNEFY 70 (374)
Q Consensus 48 ~~~~~~~a~~~g~~a~aitd~~~ 70 (374)
+.+++++|+++ .+.+|||||+.
T Consensus 16 ~~e~~~~A~~~-~~~i~itdH~~ 37 (212)
T 1v77_A 16 DKEAYELAKEW-FDEVVVSIKFN 37 (212)
T ss_dssp SHHHHHHHHHH-CSEEEEEEEES
T ss_pred HHHHHHHHHHH-hcEEEEeeccC
Confidence 89999999999 99999999985
No 58
>3dcp_A Histidinol-phosphatase; HISK, histidine biosynthesis, NESG, LMR141, structural genomics, PSI-2, protein structure initiative; 2.10A {Listeria monocytogenes str}
Probab=41.01 E-value=14 Score=34.58 Aligned_cols=26 Identities=4% Similarity=-0.239 Sum_probs=23.8
Q ss_pred CChhhHHHHHHhcCCcceeecccCCC
Q 017267 46 HPGGDAGESIHQLSSEFVEYSNEFYN 71 (374)
Q Consensus 46 ~~~~~~~~~a~~~g~~a~aitd~~~~ 71 (374)
.++++++++|.+-|.+.|+||||...
T Consensus 18 ~~~~e~~~~A~~~G~~~i~~TdH~~~ 43 (283)
T 3dcp_A 18 DDVEEMVLKAIELDFDEYSIVEHAPL 43 (283)
T ss_dssp CCHHHHHHHHHHTTCCEEEEEEECCC
T ss_pred CCHHHHHHHHHHCCCCEEEEecCCCC
Confidence 47899999999999999999999854
No 59
>2a1r_A Poly(A)-specific ribonuclease PARN; DEDD, nuclease domain, hydrolase-RNA complex; 2.60A {Homo sapiens} PDB: 2a1s_A
Probab=28.40 E-value=86 Score=31.09 Aligned_cols=49 Identities=20% Similarity=0.166 Sum_probs=33.9
Q ss_pred ccEEEEEEeeCCCCCCCC----------------------CCCceEEEceEEEEcCC---CeEEEEEEEeecCC
Q 017267 96 QYFVVIDFEATCDKDKNP----------------------YPQEIIEFPSVIVSSVT---GQLEACFQTYVRPT 144 (374)
Q Consensus 96 ~~~VVfDlETTGl~~~~~----------------------~~deIIEIGAVkvd~~~---G~iidsF~~lVkP~ 144 (374)
-.||++|+|.||...... ..-.||++|...++... +-..-.|+.++=|.
T Consensus 22 ~~fVAiD~Ef~Gi~~~~~~~~~~~~~~s~e~~Y~~lr~nv~~~~iiQlGlt~f~~~~~~~~~~~~~fNF~~FP~ 95 (430)
T 2a1r_A 22 ADFFAIDGEFSGISDGPSVSALTNGFDTPEERYQKLKKHSMDFLLFQFGLCTFKYDYTDSKYITKSFNFYVFPK 95 (430)
T ss_dssp CSEEEEEEEESCSCSSSCC-----CCCCHHHHHHHHHHHTTTBCEEEEEEEEEEEETTTTEEEEEEEEEEBCCC
T ss_pred CCEEEEeeeeccccCCCccccccccCCCHHHHHHHHHHHHhhcceeeEEEEEEeecCCCCceeEEEEEEEeccc
Confidence 369999999999842110 12369999999987321 22467899987664
No 60
>2gai_A DNA topoisomerase I; zinc ribbon; HET: DNA; 1.70A {Thermotoga maritima} PDB: 2gaj_A*
Probab=24.41 E-value=15 Score=38.60 Aligned_cols=23 Identities=9% Similarity=-0.236 Sum_probs=9.6
Q ss_pred CCCCCcccCCCCcccCCCccCcccccCC
Q 017267 345 KQGSVFFGCGNWTVTRGARCHFFEWAFT 372 (374)
Q Consensus 345 n~Gr~fy~C~~~~~~~~~~c~~f~W~~~ 372 (374)
..|+.||+|.+| ..|+|-.|..+
T Consensus 589 k~G~~f~gCs~y-----p~C~f~~~~~p 611 (633)
T 2gai_A 589 DEIAVIDDGKIF-----LGRKDSESGSP 611 (633)
T ss_dssp TSBCEEETTEEE-----C----------
T ss_pred cCCCeEEeCCCC-----cCCCCeecCCc
Confidence 357889999765 24999999753
Done!