BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017268
(374 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q2RNG2|GLND_RHORT [Protein-PII] uridylyltransferase OS=Rhodospirillum rubrum (strain
ATCC 11170 / NCIB 8255) GN=glnD PE=3 SV=1
Length = 936
Score = 73.6 bits (179), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 64/236 (27%), Positives = 105/236 (44%), Gaps = 31/236 (13%)
Query: 36 SLRSSVGVMPTEEH--TSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVV 93
L +V V+P E + + D PGLFS++ +A N+++A+I T +D A +
Sbjct: 711 GLTVAVEVLPDPERAVSEVLVATDDHPGLFSKIAGAMALAGVNILDAKITTMSDGGALDI 770
Query: 94 HVTDHSTGYAIKDPKRLSTIKELLFNVLRGYDDFRKAKTSLSPPGIMNRERRLHQIMFDD 153
G+AI+ +R++ + + + +VL G KA PP + R R L
Sbjct: 771 FTVQTLEGHAIEKEERIARLAKTVRDVLTGDLPLEKALRR-QPPRLPERTRHL------- 822
Query: 154 RDYERVEKAVGRVEDKSSRPQVTVLN-IEKDYTVITMRSKDRPKLLFDIVCTLTDMQYVV 212
+ P+V V N K +TVI + +DRP L+ + LTD+ +
Sbjct: 823 ----------------TVPPRVIVDNQASKTHTVIEINGRDRPGFLYAVTRALTDVAVQI 866
Query: 213 FHGMVNTGRTEAYQEFYIRHVDGLPISSEAERERVIQCLEAAI----ERRASEGLE 264
V+T FY++ V G+ I A+ ++ + LEAAI R+ EG E
Sbjct: 867 SSARVSTYGERVVDSFYVKDVFGMKIVHRAKLAQIREALEAAITQTVPRKVEEGAE 922
Score = 40.8 bits (94), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 30/52 (57%)
Query: 265 LELCTEDRVGLLSDITRIFRENSLSIKRAEISTIGGKVKDTFYVTDVTGNPV 316
+E+ DR G L +TR + ++ I A +ST G +V D+FYV DV G +
Sbjct: 841 IEINGRDRPGFLYAVTRALTDVAVQISSARVSTYGERVVDSFYVKDVFGMKI 892
>sp|Q5FPT6|GLND_GLUOX [Protein-PII] uridylyltransferase OS=Gluconobacter oxydans (strain
621H) GN=glnD PE=3 SV=1
Length = 949
Score = 66.2 bits (160), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 56/219 (25%), Positives = 87/219 (39%), Gaps = 26/219 (11%)
Query: 40 SVGVMPTEEHTSIEFT--GTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTD 97
+V P E E T D PGLFS++ LA ++V+A I T +D A
Sbjct: 744 TVEAYPIPERGVTELTVLCADHPGLFSQIAGALAVSGASIVDARIHTLSDGMALDTFWVQ 803
Query: 98 HSTGYAIKDPKRLSTIKELLFNVLRGYDDFRKAKTSLSPPGIMNRERRLHQIMFDDRDYE 157
G + ++P +L + L+ L G D RK S R R +H
Sbjct: 804 DGEGCSFEEPHQLGRLNHLVEQALSGRLDIRKGIEDASHHSTSRRMRAIH---------- 853
Query: 158 RVEKAVGRVEDKSSRPQVTVLNIEKD-YTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGM 216
P+V + N D +TVI + +DRP LL D+ L+ +
Sbjct: 854 -------------VPPRVVIDNTASDRHTVIEVNGRDRPGLLHDVTSALSSASLQISSAH 900
Query: 217 VNTGRTEAYQEFYIRHVDGLPISSEAERERVIQCLEAAI 255
+ T A FY+R + G+ I+ R+ + L A++
Sbjct: 901 ITTYGMRAVDVFYVRDLLGMKITDPVRLARLRETLLASL 939
Score = 44.3 bits (103), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 40/87 (45%), Gaps = 11/87 (12%)
Query: 265 LELCTEDRVGLLSDITRIFRENSLSIKRAEISTIGGKVKDTFYVTDVTGNPVDPKIIDSI 324
+E+ DR GLL D+T SL I A I+T G + D FYV D+ G KI D +
Sbjct: 871 IEVNGRDRPGLLHDVTSALSSASLQISSAHITTYGMRAVDVFYVRDLLGM----KITDPV 926
Query: 325 RRQIGHTKLQVKRSTILAPKPPKETTT 351
R L R T+LA TT
Sbjct: 927 R-------LARLRETLLASLTSAPVTT 946
>sp|A4XWU3|GLND_PSEMY [Protein-PII] uridylyltransferase OS=Pseudomonas mendocina (strain
ymp) GN=glnD PE=3 SV=1
Length = 899
Score = 58.5 bits (140), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 29/65 (44%), Positives = 43/65 (66%), Gaps = 1/65 (1%)
Query: 265 LELCTEDRVGLLSDITRIFRENSLSIKRAEISTIGGKVKDTFYVTDVTGNPV-DPKIIDS 323
LEL DR GLL+ I RIF E LS++ A+I+T+G +V+D F+VTD P+ DP++
Sbjct: 817 LELTAPDRPGLLARIGRIFLEYDLSLQNAKIATLGERVEDVFFVTDANNQPLSDPELCAR 876
Query: 324 IRRQI 328
++ I
Sbjct: 877 LQETI 881
Score = 40.4 bits (93), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 51/219 (23%), Positives = 85/219 (38%), Gaps = 37/219 (16%)
Query: 47 EEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKD 106
E T I D+ F+ A ++ L+ N+ +A I T + +V + G +I D
Sbjct: 702 EGGTQIFIYAPDQHDFFAVTVAAMSQLNLNIHDARIITSTSQFTLDTYVVLDADGGSIGD 761
Query: 107 -PKRLSTIKELLFNVLRGYDDFRKAKTSLSPPGIMNRE--RRLHQIMFDDRDYERVEKAV 163
P R+ I+E L L+ D++ P I+ R R+L F
Sbjct: 762 NPARIKQIREGLIEALKNPDEY---------PTIIQRRVPRQLKHFAF------------ 800
Query: 164 GRVEDKSSRPQVTVLN-IEKDYTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGRT 222
PQVT+ N ++ T++ + + DRP LL I + + + + T
Sbjct: 801 --------APQVTIHNDAQRPVTILELTAPDRPGLLARIGRIFLEYDLSLQNAKIATLGE 852
Query: 223 EAYQEFYIRHVDGLPISSEAERERVIQCLEAAIERRASE 261
F++ + P+S R L+ I RR SE
Sbjct: 853 RVEDVFFVTDANNQPLSDPELCAR----LQETIVRRLSE 887
Score = 38.5 bits (88), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 34/137 (24%), Positives = 58/137 (42%), Gaps = 25/137 (18%)
Query: 1 MDVFNVIDCDGKKIRDK-------------------EVIDYIQQRLETDA---SFAPSLR 38
+D + V+D DG I D E IQ+R+ +FAP +
Sbjct: 746 LDTYVVLDADGGSIGDNPARIKQIREGLIEALKNPDEYPTIIQRRVPRQLKHFAFAPQV- 804
Query: 39 SSVGVMPTEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDH 98
++ T +E T DRPGL + + + + ++ NA+I T +R V VTD
Sbjct: 805 -TIHNDAQRPVTILELTAPDRPGLLARIGRIFLEYDLSLQNAKIATLGERVEDVFFVTD- 862
Query: 99 STGYAIKDPKRLSTIKE 115
+ + DP+ + ++E
Sbjct: 863 ANNQPLSDPELCARLQE 879
>sp|B1JBR2|GLND_PSEPW [Protein-PII] uridylyltransferase OS=Pseudomonas putida (strain
W619) GN=glnD PE=3 SV=1
Length = 900
Score = 57.8 bits (138), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 51/80 (63%), Gaps = 2/80 (2%)
Query: 265 LELCTEDRVGLLSDITRIFRENSLSIKRAEISTIGGKVKDTFYVTDVTGNPV-DPKIIDS 323
LE+ DR GLL+ I RIF E LS++ A+I+T+G +V+D F++TD P+ DP++
Sbjct: 817 LEITAPDRPGLLARIGRIFLEFDLSLQNAKIATLGERVEDVFFITDADNQPLSDPQLCSR 876
Query: 324 IRRQIGHTKLQVKRSTILAP 343
++ I +LQ +++ +P
Sbjct: 877 LQEAIVQ-QLQAGQASDASP 895
Score = 44.3 bits (103), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 52/222 (23%), Positives = 90/222 (40%), Gaps = 37/222 (16%)
Query: 47 EEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKD 106
E T I D+ F+ A ++ L+ N+ +A I T + + ++ + G +I D
Sbjct: 702 EGGTQIFIYAPDQHDFFAVTVAAMSQLNLNIHDARIITSSSQFTLDTYIVLDNDGGSIGD 761
Query: 107 -PKRLSTIKELLFNVLRGYDDFRKAKTSLSPPGIMNRE--RRLHQIMFDDRDYERVEKAV 163
P+R+ I++ L LR +D+ P I+ R R+L F
Sbjct: 762 NPQRVKQIRDGLTEALRNPEDY---------PTIIQRRVPRQLKHFNFP----------- 801
Query: 164 GRVEDKSSRPQVTVLN-IEKDYTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGRT 222
PQVT+LN ++ T++ + + DRP LL I + + + + T
Sbjct: 802 ---------PQVTILNDAQRAVTILEITAPDRPGLLARIGRIFLEFDLSLQNAKIATLGE 852
Query: 223 EAYQEFYIRHVDGLPISSEA----ERERVIQCLEAAIERRAS 260
F+I D P+S +E ++Q L+A AS
Sbjct: 853 RVEDVFFITDADNQPLSDPQLCSRLQEAIVQQLQAGQASDAS 894
>sp|Q886P5|GLND_PSESM [Protein-PII] uridylyltransferase OS=Pseudomonas syringae pv.
tomato (strain DC3000) GN=glnD PE=3 SV=1
Length = 898
Score = 57.8 bits (138), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 43/65 (66%), Gaps = 1/65 (1%)
Query: 265 LELCTEDRVGLLSDITRIFRENSLSIKRAEISTIGGKVKDTFYVTDVTGNPV-DPKIIDS 323
LEL DR GLL+ I +IF E LS++ A+I+T+G +V+D F++TD P+ DP++
Sbjct: 816 LELLAPDRPGLLARIGKIFLEFDLSLQNAKIATLGERVEDVFFITDANNQPLSDPQLCSQ 875
Query: 324 IRRQI 328
++ I
Sbjct: 876 LQEAI 880
Score = 42.0 bits (97), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 47/197 (23%), Positives = 77/197 (39%), Gaps = 33/197 (16%)
Query: 47 EEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVH-VTDHSTGYAIK 105
E T I D+ F+ A + L+ N+ +A I T + + + V DH G
Sbjct: 701 EGGTQIFIYAPDQHDFFAVTVAAMDQLNLNIHDARIITSSSQFTLDTYIVLDHEGGSIGN 760
Query: 106 DPKRLSTIKELLFNVLRGYDDFRKAKTSLSPPGIMNRE--RRLHQIMFDDRDYERVEKAV 163
+P+R+ I++ L LR DD+ P I+ R R+L F
Sbjct: 761 NPERIQDIRDGLTEALRNPDDY---------PTIIKRRVPRQLKHFAF------------ 799
Query: 164 GRVEDKSSRPQVTVLN-IEKDYTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGRT 222
PQVT+ N ++ TV+ + + DRP LL I + + + + T
Sbjct: 800 --------APQVTIHNDAQRPVTVLELLAPDRPGLLARIGKIFLEFDLSLQNAKIATLGE 851
Query: 223 EAYQEFYIRHVDGLPIS 239
F+I + P+S
Sbjct: 852 RVEDVFFITDANNQPLS 868
Score = 38.1 bits (87), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
Query: 50 TSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKR 109
T +E DRPGL + + + + ++ NA+I T +R V +TD + + DP+
Sbjct: 814 TVLELLAPDRPGLLARIGKIFLEFDLSLQNAKIATLGERVEDVFFITD-ANNQPLSDPQL 872
Query: 110 LSTIKELLFNVL 121
S ++E + L
Sbjct: 873 CSQLQEAIVKQL 884
>sp|Q48F57|GLND_PSE14 [Protein-PII] uridylyltransferase OS=Pseudomonas syringae pv.
phaseolicola (strain 1448A / Race 6) GN=glnD PE=3 SV=1
Length = 898
Score = 57.4 bits (137), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 44/65 (67%), Gaps = 1/65 (1%)
Query: 265 LELCTEDRVGLLSDITRIFRENSLSIKRAEISTIGGKVKDTFYVTDVTGNPV-DPKIIDS 323
LEL DR GLL+ I +IF E LS++ A+I+T+G +V+D F++TD +P+ DP++
Sbjct: 816 LELLAPDRPGLLARIGKIFLEFDLSLQNAKIATLGERVEDVFFITDANNHPLSDPQLCSQ 875
Query: 324 IRRQI 328
++ I
Sbjct: 876 LQDAI 880
Score = 38.9 bits (89), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 46/197 (23%), Positives = 77/197 (39%), Gaps = 33/197 (16%)
Query: 47 EEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKD 106
E T I D+ F+ A + L+ N+ +A I T + + ++ + G +I D
Sbjct: 701 EGGTQIFIYAPDQHDFFAVTVAAMDQLNLNIHDARIITSSSKFTLDTYIVLDNEGGSIGD 760
Query: 107 -PKRLSTIKELLFNVLRGYDDFRKAKTSLSPPGIMNRE--RRLHQIMFDDRDYERVEKAV 163
P+R+ I+ L LR DD+ P I+ R R+L F
Sbjct: 761 NPERVQEIRNGLTEALRNPDDY---------PTIIKRRVPRQLKHFAF------------ 799
Query: 164 GRVEDKSSRPQVTVLN-IEKDYTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGRT 222
PQVT+ N ++ TV+ + + DRP LL I + + + + T
Sbjct: 800 --------APQVTIHNDAQRPVTVLELLAPDRPGLLARIGKIFLEFDLSLQNAKIATLGE 851
Query: 223 EAYQEFYIRHVDGLPIS 239
F+I + P+S
Sbjct: 852 RVEDVFFITDANNHPLS 868
Score = 38.5 bits (88), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 40/81 (49%), Gaps = 6/81 (7%)
Query: 50 TSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKR 109
T +E DRPGL + + + + ++ NA+I T +R V +TD + + + DP+
Sbjct: 814 TVLELLAPDRPGLLARIGKIFLEFDLSLQNAKIATLGERVEDVFFITD-ANNHPLSDPQL 872
Query: 110 LST-----IKELLFNVLRGYD 125
S +K+L N G+D
Sbjct: 873 CSQLQDAIVKQLSVNSEPGHD 893
>sp|Q4ZWT0|GLND_PSEU2 [Protein-PII] uridylyltransferase OS=Pseudomonas syringae pv.
syringae (strain B728a) GN=glnD PE=3 SV=1
Length = 898
Score = 57.0 bits (136), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 47/69 (68%), Gaps = 5/69 (7%)
Query: 265 LELCTEDRVGLLSDITRIFRENSLSIKRAEISTIGGKVKDTFYVTDVTGNPV-DPKII-- 321
LEL DR GLL+ I +IF E LS++ A+I+T+G +V+D F++TD +P+ DP++
Sbjct: 816 LELLAPDRPGLLARIGKIFLEFDLSLQNAKIATLGERVEDVFFITDANNHPLSDPQLCRQ 875
Query: 322 --DSIRRQI 328
D+I +Q+
Sbjct: 876 LQDAIVKQL 884
Score = 43.1 bits (100), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 48/197 (24%), Positives = 77/197 (39%), Gaps = 33/197 (16%)
Query: 47 EEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVH-VTDHSTGYAIK 105
E T I D+ F+ A + L+ N+ +A I T + + + V DH G
Sbjct: 701 EGGTQIFIYAPDQHDFFAVTVAAMDQLNLNIHDARIITSSSKFTLDTYIVLDHEGGSIGN 760
Query: 106 DPKRLSTIKELLFNVLRGYDDFRKAKTSLSPPGIMNRE--RRLHQIMFDDRDYERVEKAV 163
+P+R+ I+E L LR DD+ P I+ R R+L F
Sbjct: 761 NPERIQDIREGLTEALRNPDDY---------PTIIKRRVPRQLKHFAF------------ 799
Query: 164 GRVEDKSSRPQVTVLN-IEKDYTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGRT 222
PQVT+ N ++ TV+ + + DRP LL I + + + + T
Sbjct: 800 --------APQVTIHNDAQRPVTVLELLAPDRPGLLARIGKIFLEFDLSLQNAKIATLGE 851
Query: 223 EAYQEFYIRHVDGLPIS 239
F+I + P+S
Sbjct: 852 RVEDVFFITDANNHPLS 868
Score = 36.2 bits (82), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Query: 50 TSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPK 108
T +E DRPGL + + + + ++ NA+I T +R V +TD + + + DP+
Sbjct: 814 TVLELLAPDRPGLLARIGKIFLEFDLSLQNAKIATLGERVEDVFFITD-ANNHPLSDPQ 871
>sp|Q1I624|GLND_PSEE4 [Protein-PII] uridylyltransferase OS=Pseudomonas entomophila
(strain L48) GN=glnD PE=3 SV=1
Length = 900
Score = 56.6 bits (135), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 51/80 (63%), Gaps = 2/80 (2%)
Query: 265 LELCTEDRVGLLSDITRIFRENSLSIKRAEISTIGGKVKDTFYVTDVTGNPV-DPKIIDS 323
LE+ DR GLL+ I RIF E +S++ A+I+T+G +V+D F++TD P+ DP++
Sbjct: 817 LEITAPDRPGLLARIGRIFLEFDISLQNAKIATLGERVEDVFFITDADNQPLSDPQLCSR 876
Query: 324 IRRQIGHTKLQVKRSTILAP 343
++ I +LQ +++ +P
Sbjct: 877 LQEAIIQ-QLQAGQASEASP 895
Score = 46.6 bits (109), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 54/222 (24%), Positives = 90/222 (40%), Gaps = 37/222 (16%)
Query: 47 EEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKD 106
E T I D+ F+ A +A L+ N+ +A I T + + ++ + G +I D
Sbjct: 702 EGGTQIFIYAPDQHDFFAVTVAAMAQLNLNIHDARIITSSSQFTLDTYIVLDNDGGSIGD 761
Query: 107 -PKRLSTIKELLFNVLRGYDDFRKAKTSLSPPGIMNRE--RRLHQIMFDDRDYERVEKAV 163
P+R+ I++ L LR +D+ P I+ R R+L F
Sbjct: 762 NPQRVKQIRDGLTEALRTPEDY---------PAIIQRRVPRQLKHFDFP----------- 801
Query: 164 GRVEDKSSRPQVTVLN-IEKDYTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGRT 222
PQVT+LN ++ T++ + + DRP LL I + + + + T
Sbjct: 802 ---------PQVTILNDAQRPVTILEITAPDRPGLLARIGRIFLEFDISLQNAKIATLGE 852
Query: 223 EAYQEFYIRHVDGLPISSEA----ERERVIQCLEAAIERRAS 260
F+I D P+S +E +IQ L+A AS
Sbjct: 853 RVEDVFFITDADNQPLSDPQLCSRLQEAIIQQLQAGQASEAS 894
Score = 40.4 bits (93), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 33/143 (23%), Positives = 63/143 (44%), Gaps = 21/143 (14%)
Query: 1 MDVFNVIDCDGKKIRD-----KEVIDYIQQRLETDASFAPSLR-------------SSVG 42
+D + V+D DG I D K++ D + + L T + ++ V
Sbjct: 746 LDTYIVLDNDGGSIGDNPQRVKQIRDGLTEALRTPEDYPAIIQRRVPRQLKHFDFPPQVT 805
Query: 43 VMPTEEH--TSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHST 100
++ + T +E T DRPGL + + + + ++ NA+I T +R V +TD +
Sbjct: 806 ILNDAQRPVTILEITAPDRPGLLARIGRIFLEFDISLQNAKIATLGERVEDVFFITD-AD 864
Query: 101 GYAIKDPKRLSTIKELLFNVLRG 123
+ DP+ S ++E + L+
Sbjct: 865 NQPLSDPQLCSRLQEAIIQQLQA 887
>sp|B0KS97|GLND_PSEPG [Protein-PII] uridylyltransferase OS=Pseudomonas putida (strain
GB-1) GN=glnD PE=3 SV=1
Length = 900
Score = 56.2 bits (134), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 50/80 (62%), Gaps = 2/80 (2%)
Query: 265 LELCTEDRVGLLSDITRIFRENSLSIKRAEISTIGGKVKDTFYVTDVTGNPV-DPKIIDS 323
LE+ DR GLL+ + RIF E LS++ A+I+T+G +V+D F++TD P+ DP++
Sbjct: 817 LEITAPDRPGLLARLGRIFLEFDLSLQNAKIATLGERVEDVFFITDADNQPLSDPQLCSR 876
Query: 324 IRRQIGHTKLQVKRSTILAP 343
++ I +LQ + + +P
Sbjct: 877 LQEAIVQ-QLQAGQGSDTSP 895
Score = 42.7 bits (99), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 49/216 (22%), Positives = 88/216 (40%), Gaps = 37/216 (17%)
Query: 47 EEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKD 106
E T I D+ F+ A ++ L+ N+ +A I T + + ++ + G +I D
Sbjct: 702 EGGTQIFIYAPDQHDFFAVTVAAMSQLNLNIHDARIITSSSQFTLDTYIVLDNDGGSIGD 761
Query: 107 -PKRLSTIKELLFNVLRGYDDFRKAKTSLSPPGIMNRE--RRLHQIMFDDRDYERVEKAV 163
P+R+ I++ L LR +D+ P I+ R R+L F
Sbjct: 762 NPQRVKQIRDGLTEALRNPEDY---------PTIIQRRVPRQLKHFDFP----------- 801
Query: 164 GRVEDKSSRPQVTVLN-IEKDYTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGRT 222
PQVT+LN ++ T++ + + DRP LL + + + + + T
Sbjct: 802 ---------PQVTILNDAQRPVTILEITAPDRPGLLARLGRIFLEFDLSLQNAKIATLGE 852
Query: 223 EAYQEFYIRHVDGLPISSEA----ERERVIQCLEAA 254
F+I D P+S +E ++Q L+A
Sbjct: 853 RVEDVFFITDADNQPLSDPQLCSRLQEAIVQQLQAG 888
>sp|Q5LWE5|GLND_RUEPO [Protein-PII] uridylyltransferase OS=Ruegeria pomeroyi (strain ATCC
700808 / DSM 15171 / DSS-3) GN=glnD PE=3 SV=1
Length = 908
Score = 56.2 bits (134), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 63/260 (24%), Positives = 107/260 (41%), Gaps = 61/260 (23%)
Query: 27 LETDASFAPSLRS----------SVGVMPTEEHTSIE--FTGTDRPGLFSEVCAVLADLH 74
+ET +FA LR + + P E+ + F D PG+FS + LA +
Sbjct: 683 VETHVTFAEMLRQLEHSGDPGGIEIRLDPDEDRDATRACFAMADHPGIFSRMAGALALVG 742
Query: 75 CNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPK-------RLSTIKELLFNVLRGYDDF 127
NVV+A +T D +VTD + I+D + RL + +++ L+G
Sbjct: 743 ANVVDARSYTTKDG-----YVTD---AFWIQDAEGHPYEAARLPRLSQMILKTLKGEVVA 794
Query: 128 RKAKTSLSPPGIMNRERRLH---QIMFDDRDYERVEKAVGRVEDKSSRPQVTVLNIEKDY 184
R A S I RE+ + I FD+ + Y
Sbjct: 795 RDALKSRDK--IKKREKAFNVPTHITFDNEGSD-------------------------IY 827
Query: 185 TVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRHVDGLPISSEAER 244
T+I + ++DRP LL+D+ L + + ++ T + FY++ + GL SEA++
Sbjct: 828 TIIEVDTRDRPGLLYDLARALAAANVYIANAVIATYGEQVVDSFYVKDMFGLKYHSEAKQ 887
Query: 245 ERVIQCLEAAIERRASEGLE 264
+ LE + + +EG E
Sbjct: 888 ----RTLETKLRKAITEGAE 903
Score = 41.6 bits (96), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 30/49 (61%)
Query: 265 LELCTEDRVGLLSDITRIFRENSLSIKRAEISTIGGKVKDTFYVTDVTG 313
+E+ T DR GLL D+ R ++ I A I+T G +V D+FYV D+ G
Sbjct: 830 IEVDTRDRPGLLYDLARALAAANVYIANAVIATYGEQVVDSFYVKDMFG 878
>sp|Q4KHH8|GLND_PSEF5 [Protein-PII] uridylyltransferase OS=Pseudomonas fluorescens
(strain Pf-5 / ATCC BAA-477) GN=glnD PE=3 SV=1
Length = 900
Score = 55.8 bits (133), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 43/65 (66%), Gaps = 1/65 (1%)
Query: 265 LELCTEDRVGLLSDITRIFRENSLSIKRAEISTIGGKVKDTFYVTDVTGNPV-DPKIIDS 323
LEL DR GLL+ I +IF E LS++ A+I+T+G +V+D F++TD P+ DP++
Sbjct: 817 LELSAPDRPGLLARIGKIFLEFDLSLQNAKIATLGERVEDVFFITDAHNQPLSDPQLCSR 876
Query: 324 IRRQI 328
++ I
Sbjct: 877 LQDAI 881
Score = 37.4 bits (85), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 44/197 (22%), Positives = 78/197 (39%), Gaps = 33/197 (16%)
Query: 47 EEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAI-K 105
E T I D+ F+ A + L+ N+ +A I T + + ++ + G +I
Sbjct: 702 EGGTQIFIYAPDQHDFFAVTVAAMDQLNLNIHDARIITSSSQFTLDTYIVLDNDGESIGN 761
Query: 106 DPKRLSTIKELLFNVLRGYDDFRKAKTSLSPPGIMNRE--RRLHQIMFDDRDYERVEKAV 163
+P+R+ I++ L + LR DD+ P I+ R R+L F
Sbjct: 762 NPQRVEQIRKGLTDALRNPDDY---------PTIIQRRVPRQLKHFAF------------ 800
Query: 164 GRVEDKSSRPQVTVLN-IEKDYTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGRT 222
P+VT+ N ++ TV+ + + DRP LL I + + + + T
Sbjct: 801 --------APEVTIHNDAQRPVTVLELSAPDRPGLLARIGKIFLEFDLSLQNAKIATLGE 852
Query: 223 EAYQEFYIRHVDGLPIS 239
F+I P+S
Sbjct: 853 RVEDVFFITDAHNQPLS 869
Score = 37.0 bits (84), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
Query: 50 TSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKR 109
T +E + DRPGL + + + + ++ NA+I T +R V +TD + + DP+
Sbjct: 815 TVLELSAPDRPGLLARIGKIFLEFDLSLQNAKIATLGERVEDVFFITD-AHNQPLSDPQL 873
Query: 110 LSTIKELLFNVL 121
S +++ + L
Sbjct: 874 CSRLQDAIVEQL 885
>sp|A5W852|GLND_PSEP1 [Protein-PII] uridylyltransferase OS=Pseudomonas putida (strain F1
/ ATCC 700007) GN=glnD PE=3 SV=1
Length = 900
Score = 55.8 bits (133), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 43/65 (66%), Gaps = 1/65 (1%)
Query: 265 LELCTEDRVGLLSDITRIFRENSLSIKRAEISTIGGKVKDTFYVTDVTGNPV-DPKIIDS 323
LE+ DR GLL+ + RIF E LS++ A+I+T+G +V+D F++TD P+ DP++
Sbjct: 817 LEITAPDRPGLLARLGRIFLEFDLSLQNAKIATLGERVEDVFFITDADNQPLSDPQLCSR 876
Query: 324 IRRQI 328
++ I
Sbjct: 877 LQEAI 881
Score = 42.7 bits (99), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 49/216 (22%), Positives = 88/216 (40%), Gaps = 37/216 (17%)
Query: 47 EEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKD 106
E T I D+ F+ A ++ L+ N+ +A I T + + ++ + G +I D
Sbjct: 702 EGGTQIFIYAPDQHDFFAVTVAAMSQLNLNIHDARIITSSSQFTLDTYIVLDNDGGSIGD 761
Query: 107 -PKRLSTIKELLFNVLRGYDDFRKAKTSLSPPGIMNRE--RRLHQIMFDDRDYERVEKAV 163
P+R+ I++ L LR +D+ P I+ R R+L F
Sbjct: 762 NPQRVKQIRDGLTEALRNPEDY---------PTIIQRRVPRQLKHFDFP----------- 801
Query: 164 GRVEDKSSRPQVTVLN-IEKDYTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGRT 222
PQVT+LN ++ T++ + + DRP LL + + + + + T
Sbjct: 802 ---------PQVTILNDAQRPVTILEITAPDRPGLLARLGRIFLEFDLSLQNAKIATLGE 852
Query: 223 EAYQEFYIRHVDGLPISSEA----ERERVIQCLEAA 254
F+I D P+S +E ++Q L+A
Sbjct: 853 RVEDVFFITDADNQPLSDPQLCSRLQEAIVQQLQAG 888
>sp|Q98C27|GLND_RHILO [Protein-PII] uridylyltransferase OS=Rhizobium loti (strain
MAFF303099) GN=glnD PE=3 SV=1
Length = 933
Score = 55.8 bits (133), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 31/59 (52%), Positives = 39/59 (66%), Gaps = 1/59 (1%)
Query: 271 DRVGLLSDITRIFRENSLSIKRAEISTIGGKVKDTFYVTDVTGNPVD-PKIIDSIRRQI 328
DR GLLS+IT + SL I A I+T G KV DTFYVTD+TG +D P I +IR ++
Sbjct: 855 DRPGLLSEITGTLSDLSLDIASAHITTFGEKVIDTFYVTDLTGQKIDSPARIATIRNRL 913
Score = 55.1 bits (131), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 42/81 (51%), Gaps = 1/81 (1%)
Query: 52 IEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLS 111
IE G DRPGL SE+ L+DL ++ +A I T ++ +VTD TG I P R++
Sbjct: 849 IEVEGLDRPGLLSEITGTLSDLSLDIASAHITTFGEKVIDTFYVTD-LTGQKIDSPARIA 907
Query: 112 TIKELLFNVLRGYDDFRKAKT 132
TI+ L L G R K
Sbjct: 908 TIRNRLMATLEGIAPERGGKA 928
Score = 40.0 bits (92), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 55/239 (23%), Positives = 89/239 (37%), Gaps = 29/239 (12%)
Query: 28 ETDASFAPSLRSSVGVMPTEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHND 87
E DA+ L + V E T I D P L S + N+V+A+I+T D
Sbjct: 715 EADAA-GKKLATMVKTHQFEAVTEITVLAQDHPRLLSVIAGACVGAGGNIVDAQIFTTAD 773
Query: 88 RAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLRGYDDFRKAKTSLSPPGIMNRERRLH 147
A + + +R + L+ +VL G S P I R +
Sbjct: 774 GRALDTILISREFDRDEDERRRAERVGRLIEDVLSG--------KSWLPEMIEKRTK--- 822
Query: 148 QIMFDDRDYERVEKAVGRVEDKSSRPQVTVLNIEKDYTVITMRSKDRPKLLFDIVCTLTD 207
+ +V K R E +++ + ++VI + DRP LL +I TL+D
Sbjct: 823 -----PKRGAKVFKIPPRAEIRNT--------LSNRFSVIEVEGLDRPGLLSEITGTLSD 869
Query: 208 MQYVVFHGMVNTGRTEAYQEFYIRHVDGLPISSEAE----RERVIQCLEAAIERRASEG 262
+ + + T + FY+ + G I S A R R++ LE R +
Sbjct: 870 LSLDIASAHITTFGEKVIDTFYVTDLTGQKIDSPARIATIRNRLMATLEGIAPERGGKA 928
>sp|Q88MI2|GLND_PSEPK [Protein-PII] uridylyltransferase OS=Pseudomonas putida (strain
KT2440) GN=glnD PE=3 SV=1
Length = 900
Score = 55.8 bits (133), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 43/65 (66%), Gaps = 1/65 (1%)
Query: 265 LELCTEDRVGLLSDITRIFRENSLSIKRAEISTIGGKVKDTFYVTDVTGNPV-DPKIIDS 323
LE+ DR GLL+ + RIF E LS++ A+I+T+G +V+D F++TD P+ DP++
Sbjct: 817 LEITAPDRPGLLARLGRIFLEFDLSLQNAKIATLGERVEDVFFITDADNQPLSDPQLCSR 876
Query: 324 IRRQI 328
++ I
Sbjct: 877 LQEAI 881
Score = 42.7 bits (99), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 49/216 (22%), Positives = 88/216 (40%), Gaps = 37/216 (17%)
Query: 47 EEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKD 106
E T I D+ F+ A ++ L+ N+ +A I T + + ++ + G +I D
Sbjct: 702 EGGTQIFIYAPDQHDFFAVTVAAMSQLNLNIHDARIITSSSQFTLDTYIVLDNDGGSIGD 761
Query: 107 -PKRLSTIKELLFNVLRGYDDFRKAKTSLSPPGIMNRE--RRLHQIMFDDRDYERVEKAV 163
P+R+ I++ L LR +D+ P I+ R R+L F
Sbjct: 762 NPQRVKQIRDGLTEALRNPEDY---------PTIIQRRVPRQLKHFDFP----------- 801
Query: 164 GRVEDKSSRPQVTVLN-IEKDYTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGRT 222
PQVT+LN ++ T++ + + DRP LL + + + + + T
Sbjct: 802 ---------PQVTILNDAQRPVTILEITAPDRPGLLARLGRIFLEFDLSLQNAKIATLGE 852
Query: 223 EAYQEFYIRHVDGLPISSEA----ERERVIQCLEAA 254
F+I D P+S +E ++Q L+A
Sbjct: 853 RVEDVFFITDADNQPLSDPQLCSRLQEAIVQQLQAG 888
>sp|Q89VX9|GLND_BRAJA [Protein-PII] uridylyltransferase OS=Bradyrhizobium japonicum
(strain USDA 110) GN=glnD PE=3 SV=2
Length = 929
Score = 55.5 bits (132), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 45/78 (57%), Gaps = 1/78 (1%)
Query: 46 TEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIK 105
++ +T IE +G DRPGL E+ ++ L+ N+ +A + T +RA V +VTD G I
Sbjct: 845 SDRYTVIEVSGLDRPGLLYELTTAISKLNLNIASAHVATFGERARDVFYVTD-LLGAQIN 903
Query: 106 DPKRLSTIKELLFNVLRG 123
P R S IK L +V+ G
Sbjct: 904 APTRQSAIKSALTHVMAG 921
Score = 43.1 bits (100), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 39/67 (58%), Gaps = 1/67 (1%)
Query: 265 LELCTEDRVGLLSDITRIFRENSLSIKRAEISTIGGKVKDTFYVTDVTGNPVD-PKIIDS 323
+E+ DR GLL ++T + +L+I A ++T G + +D FYVTD+ G ++ P +
Sbjct: 851 IEVSGLDRPGLLYELTTAISKLNLNIASAHVATFGERARDVFYVTDLLGAQINAPTRQSA 910
Query: 324 IRRQIGH 330
I+ + H
Sbjct: 911 IKSALTH 917
Score = 42.7 bits (99), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 50/212 (23%), Positives = 85/212 (40%), Gaps = 45/212 (21%)
Query: 50 TSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHND-RAAAVVHVT-----DHSTGYA 103
T + D P L S + A N+V+A+I+T D RA + ++ D G
Sbjct: 739 TELTIFAADHPWLLSIIAGACASAGANIVDAQIYTTTDGRALDTISISREYDRDEDEG-- 796
Query: 104 IKDPKRLSTIKELLFNVLRGYDDFRKAKTSLSPPGIMNRERRLHQIMFDDRDYERVEKAV 163
+R + I E++ +VL G L P ++ R R ++
Sbjct: 797 ----RRATRIGEMIEDVLEG---------KLRLPEVVAR---------------RTVRSK 828
Query: 164 GR---VEDKSSRPQVTVLNIEKD-YTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNT 219
R +E P+VT+ N D YTVI + DRP LL+++ ++ + + V T
Sbjct: 829 ARPFVIE-----PEVTINNQWSDRYTVIEVSGLDRPGLLYELTTAISKLNLNIASAHVAT 883
Query: 220 GRTEAYQEFYIRHVDGLPISSEAERERVIQCL 251
A FY+ + G I++ + + L
Sbjct: 884 FGERARDVFYVTDLLGAQINAPTRQSAIKSAL 915
>sp|Q3J5H6|GLND_RHOS4 [Protein-PII] uridylyltransferase OS=Rhodobacter sphaeroides
(strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158)
GN=glnD PE=3 SV=1
Length = 930
Score = 55.5 bits (132), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 55/215 (25%), Positives = 87/215 (40%), Gaps = 33/215 (15%)
Query: 45 PTEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTG--Y 102
P + T F D PG+FS + LA + NVV+A +T D A V S G Y
Sbjct: 736 PDRDATRACFALADHPGIFSRLAGALALVGANVVDARTYTTKDGYATAVFWIQDSEGSPY 795
Query: 103 AIKDPKRLSTIKELLFNVLRGYDDFRKAKTSLSPPGIMNRERRLHQIMFDDRDYERVEKA 162
I RL + ++ L+G R+A DRD + +A
Sbjct: 796 EI---SRLPRLTSMIDKTLKGEVVAREA--------------------LKDRDKLKKREA 832
Query: 163 VGRVEDKSSRPQVTVLNIEKD--YTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTG 220
R P + E YT+I + ++DRP LL+D+ TL + ++ T
Sbjct: 833 QFRF------PTHIAFDNEGSDIYTIIEVDTRDRPGLLYDLTRTLAANNIYIASAVIATY 886
Query: 221 RTEAYQEFYIRHVDGLPISSEAERERVIQCLEAAI 255
+ FY++ + GL + + +E + + L AI
Sbjct: 887 GAQVVDSFYVKDMFGLKLHQKNRQETLEKKLRQAI 921
Score = 47.4 bits (111), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 32/49 (65%)
Query: 265 LELCTEDRVGLLSDITRIFRENSLSIKRAEISTIGGKVKDTFYVTDVTG 313
+E+ T DR GLL D+TR N++ I A I+T G +V D+FYV D+ G
Sbjct: 853 IEVDTRDRPGLLYDLTRTLAANNIYIASAVIATYGAQVVDSFYVKDMFG 901
>sp|A4YKP3|GLND_BRASO [Protein-PII] uridylyltransferase OS=Bradyrhizobium sp. (strain
ORS278) GN=glnD PE=3 SV=1
Length = 931
Score = 55.1 bits (131), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 57/113 (50%), Gaps = 1/113 (0%)
Query: 13 KIRDKEVIDYIQQRLETDASFAPSLRSSVGVMPTEEHTSIEFTGTDRPGLFSEVCAVLAD 72
K+R + + R + +F+ S+ +E +T IE +G DRPGL E+ ++
Sbjct: 813 KLRLPDAVARRTTRGKQHKAFSVEPEVSINNQWSELYTVIEVSGLDRPGLLYELTTAISK 872
Query: 73 LHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLRGYD 125
L+ N+ +A + T +RA V +VTD G I P R + IK L ++L D
Sbjct: 873 LNLNIASAHVATFGERARDVFYVTD-LLGAQINAPTRQAAIKSALLHLLASED 924
Score = 45.1 bits (105), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 54/211 (25%), Positives = 84/211 (39%), Gaps = 38/211 (18%)
Query: 37 LRSSVGVMPTEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHND-RAAAVVHV 95
L +VG P T + D P L S + A N+V+A+I+T D RA + +
Sbjct: 726 LAINVGFDPARGVTELTIFAMDHPWLLSIIAGACASAGANIVDAQIYTTTDGRALDTIAI 785
Query: 96 T-----DHSTGYAIKDPKRLSTIKELLFNVLRGYDDFRKAKTSLSPPGIMNRERRLHQIM 150
+ D G +R + I E + VL G K L P + R R Q
Sbjct: 786 SREYERDEDEG------RRATRIGETIEQVLEG-------KLRL-PDAVARRTTRGKQ-- 829
Query: 151 FDDRDYERVEKAVGRVEDKSSRPQVTVLNIEKD-YTVITMRSKDRPKLLFDIVCTLTDMQ 209
KA S P+V++ N + YTVI + DRP LL+++ ++ +
Sbjct: 830 ---------HKAF------SVEPEVSINNQWSELYTVIEVSGLDRPGLLYELTTAISKLN 874
Query: 210 YVVFHGMVNTGRTEAYQEFYIRHVDGLPISS 240
+ V T A FY+ + G I++
Sbjct: 875 LNIASAHVATFGERARDVFYVTDLLGAQINA 905
Score = 42.7 bits (99), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 33/53 (62%)
Query: 265 LELCTEDRVGLLSDITRIFRENSLSIKRAEISTIGGKVKDTFYVTDVTGNPVD 317
+E+ DR GLL ++T + +L+I A ++T G + +D FYVTD+ G ++
Sbjct: 852 IEVSGLDRPGLLYELTTAISKLNLNIASAHVATFGERARDVFYVTDLLGAQIN 904
>sp|Q1QRM1|GLND_NITHX [Protein-PII] uridylyltransferase OS=Nitrobacter hamburgensis
(strain X14 / DSM 10229) GN=glnD PE=3 SV=1
Length = 931
Score = 55.1 bits (131), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 45/76 (59%), Gaps = 1/76 (1%)
Query: 46 TEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIK 105
++ HT IE +G DRPGL ++ A ++ L+ N+ +A + T +RA V +VTD G I
Sbjct: 846 SDRHTVIEVSGLDRPGLLFQLTAAISKLNLNIASAHVATFGERARDVFYVTD-LLGARIT 904
Query: 106 DPKRLSTIKELLFNVL 121
P R + IK L ++L
Sbjct: 905 APTRQAAIKRALIHLL 920
Score = 42.0 bits (97), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 38/67 (56%), Gaps = 1/67 (1%)
Query: 265 LELCTEDRVGLLSDITRIFRENSLSIKRAEISTIGGKVKDTFYVTDVTGNPVD-PKIIDS 323
+E+ DR GLL +T + +L+I A ++T G + +D FYVTD+ G + P +
Sbjct: 852 IEVSGLDRPGLLFQLTAAISKLNLNIASAHVATFGERARDVFYVTDLLGARITAPTRQAA 911
Query: 324 IRRQIGH 330
I+R + H
Sbjct: 912 IKRALIH 918
Score = 40.8 bits (94), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 49/218 (22%), Positives = 81/218 (37%), Gaps = 30/218 (13%)
Query: 37 LRSSVGVMPTEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVT 96
L +VG T + D P L S + A N+V+A+I+T D A
Sbjct: 726 LNINVGFDEARGVTELTIFAADHPWLLSIIAGACASAGANIVDAQIYTTTDGQALDTIAI 785
Query: 97 DHSTGYAIKDPKRLSTIKELLFNVLRGYDDFRKAKTSLSPPGIMNRERRLHQIMFDDRDY 156
+ +R + I E++ V+ G L P ++ R
Sbjct: 786 SREYDRDEDEGRRAARIGEIIEQVIDG---------RLRLPDVVAR-------------- 822
Query: 157 ERVEKAVG--RVEDKSSRPQVTVLNIEKD-YTVITMRSKDRPKLLFDIVCTLTDMQYVVF 213
+A G R+ P+V V N D +TVI + DRP LLF + ++ + +
Sbjct: 823 ----RAAGKTRLRPFVVEPKVIVNNQWSDRHTVIEVSGLDRPGLLFQLTAAISKLNLNIA 878
Query: 214 HGMVNTGRTEAYQEFYIRHVDGLPISSEAERERVIQCL 251
V T A FY+ + G I++ + + + L
Sbjct: 879 SAHVATFGERARDVFYVTDLLGARITAPTRQAAIKRAL 916
>sp|Q8RQD1|GLND_AZOBR [Protein-PII] uridylyltransferase OS=Azospirillum brasilense
GN=glnD PE=3 SV=1
Length = 933
Score = 55.1 bits (131), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 56/208 (26%), Positives = 91/208 (43%), Gaps = 30/208 (14%)
Query: 50 TSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTH-NDRAAAVVHVTDHSTGYAIKDPK 108
T + TD GLFS + LA ++V+A I+T N A V V D + G A +
Sbjct: 745 TEVTIFATDHHGLFSRLAGALAAAGADIVDARIFTMTNGMALDVFTVQDAAGGGAFESGD 804
Query: 109 RLSTIKELLFNVLRGYDDFRKAKTSLSPPGIMNRERRLHQIMFDDRDYERVEKAVGRVED 168
+L+ + ++ VL G L P LH + +R R
Sbjct: 805 KLAKLSVMIEKVLSG---------QLKP---------LHDLT------KRKAPHASRTRV 840
Query: 169 KSSRPQVTV-LNIEKDYTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQE 227
P+V + N +TVI + +DRP LL+D+ LT++ + ++T +A
Sbjct: 841 FHVPPRVLIDNNASTTHTVIEVNGRDRPGLLYDLTRALTNLTLQISSAKISTYGEKAIDV 900
Query: 228 FYIRHVDGLPISSEAE----RERVIQCL 251
FY++ V GL ++ E + RER++ L
Sbjct: 901 FYVKDVFGLKVTHENKLAQIRERLLHAL 928
Score = 45.4 bits (106), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 40/73 (54%), Gaps = 1/73 (1%)
Query: 49 HTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPK 108
HT IE G DRPGL ++ L +L + +A+I T+ ++A V +V D G +
Sbjct: 857 HTVIEVNGRDRPGLLYDLTRALTNLTLQISSAKISTYGEKAIDVFYVKD-VFGLKVTHEN 915
Query: 109 RLSTIKELLFNVL 121
+L+ I+E L + L
Sbjct: 916 KLAQIRERLLHAL 928
Score = 45.1 bits (105), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 24/49 (48%), Positives = 29/49 (59%)
Query: 265 LELCTEDRVGLLSDITRIFRENSLSIKRAEISTIGGKVKDTFYVTDVTG 313
+E+ DR GLL D+TR +L I A+IST G K D FYV DV G
Sbjct: 860 IEVNGRDRPGLLYDLTRALTNLTLQISSAKISTYGEKAIDVFYVKDVFG 908
>sp|A5ETJ9|GLND_BRASB [Protein-PII] uridylyltransferase OS=Bradyrhizobium sp. (strain
BTAi1 / ATCC BAA-1182) GN=glnD PE=3 SV=1
Length = 931
Score = 55.1 bits (131), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 56/109 (51%), Gaps = 1/109 (0%)
Query: 13 KIRDKEVIDYIQQRLETDASFAPSLRSSVGVMPTEEHTSIEFTGTDRPGLFSEVCAVLAD 72
K+R + + R + +F+ S+ +E +T IE +G DRPGL E+ ++
Sbjct: 813 KLRLPDAVARRTTRGKQHKAFSVEPEVSINNQWSELYTVIEVSGLDRPGLLYELTTAISK 872
Query: 73 LHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVL 121
L+ N+ +A + T +RA V +VTD G I P R + IK L ++L
Sbjct: 873 LNLNIASAHVATFGERARDVFYVTD-LLGAQINAPTRQAAIKSALLHLL 920
Score = 45.1 bits (105), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 54/211 (25%), Positives = 84/211 (39%), Gaps = 38/211 (18%)
Query: 37 LRSSVGVMPTEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHND-RAAAVVHV 95
L +VG P T + D P L S + A N+V+A+I+T D RA + +
Sbjct: 726 LAINVGFDPARGVTELTIFAMDHPWLLSIIAGACASAGANIVDAQIYTTTDGRALDTIAI 785
Query: 96 T-----DHSTGYAIKDPKRLSTIKELLFNVLRGYDDFRKAKTSLSPPGIMNRERRLHQIM 150
+ D G +R + I E + VL G K L P + R R Q
Sbjct: 786 SREYERDEDEG------RRATRIGETIEQVLEG-------KLRL-PDAVARRTTRGKQ-- 829
Query: 151 FDDRDYERVEKAVGRVEDKSSRPQVTVLNIEKD-YTVITMRSKDRPKLLFDIVCTLTDMQ 209
KA S P+V++ N + YTVI + DRP LL+++ ++ +
Sbjct: 830 ---------HKAF------SVEPEVSINNQWSELYTVIEVSGLDRPGLLYELTTAISKLN 874
Query: 210 YVVFHGMVNTGRTEAYQEFYIRHVDGLPISS 240
+ V T A FY+ + G I++
Sbjct: 875 LNIASAHVATFGERARDVFYVTDLLGAQINA 905
Score = 42.7 bits (99), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 33/53 (62%)
Query: 265 LELCTEDRVGLLSDITRIFRENSLSIKRAEISTIGGKVKDTFYVTDVTGNPVD 317
+E+ DR GLL ++T + +L+I A ++T G + +D FYVTD+ G ++
Sbjct: 852 IEVSGLDRPGLLYELTTAISKLNLNIASAHVATFGERARDVFYVTDLLGAQIN 904
>sp|C3K5E4|GLND_PSEFS [Protein-PII] uridylyltransferase OS=Pseudomonas fluorescens
(strain SBW25) GN=glnD PE=3 SV=1
Length = 900
Score = 54.7 bits (130), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 53/84 (63%), Gaps = 8/84 (9%)
Query: 265 LELCTEDRVGLLSDITRIFRENSLSIKRAEISTIGGKVKDTFYVTDVTGNPV-DPKII-- 321
LEL DR GLL+ I IF E LS++ A+I+T+G +V+D F++TD P+ DP++
Sbjct: 817 LELSAPDRPGLLARIGGIFLEFDLSLQNAKIATLGERVEDVFFITDADNQPLSDPELCRR 876
Query: 322 --DSIRRQIGHTK---LQVKRSTI 340
D+I +Q+ T+ +++ R TI
Sbjct: 877 LQDAIVQQLSVTQEPGVELTRLTI 900
Score = 43.1 bits (100), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 52/227 (22%), Positives = 86/227 (37%), Gaps = 33/227 (14%)
Query: 47 EEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKD 106
E T I D+ F+ A + L+ N+ +A + T + + ++ + G +I D
Sbjct: 702 EGGTQIFIYAPDQHDFFAVTVAAMDQLNLNIHDARVITSSSQFTLDTYIVLDTEGESIGD 761
Query: 107 -PKRLSTIKELLFNVLRGYDDFRKAKTSLSPPGIMNRE--RRLHQIMFDDRDYERVEKAV 163
P R+ I+E L LR DD+ P I+ R R+L F
Sbjct: 762 NPVRVKKIREGLTEALRNPDDY---------PTIIQRRVPRQLKHFAF------------ 800
Query: 164 GRVEDKSSRPQVTVLN-IEKDYTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGRT 222
PQVT+ N ++ TV+ + + DRP LL I + + + + T
Sbjct: 801 --------APQVTISNDAQRPVTVLELSAPDRPGLLARIGGIFLEFDLSLQNAKIATLGE 852
Query: 223 EAYQEFYIRHVDGLPISSEAERERVIQCLEAAIERRASEGLELELCT 269
F+I D P+S R+ + + G+EL T
Sbjct: 853 RVEDVFFITDADNQPLSDPELCRRLQDAIVQQLSVTQEPGVELTRLT 899
Score = 37.0 bits (84), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 58/131 (44%), Gaps = 27/131 (20%)
Query: 1 MDVFNVIDCDGKKIRDKEV----------------IDY---IQQRLETDA---SFAPSLR 38
+D + V+D +G+ I D V DY IQ+R+ +FAP +
Sbjct: 746 LDTYIVLDTEGESIGDNPVRVKKIREGLTEALRNPDDYPTIIQRRVPRQLKHFAFAPQVT 805
Query: 39 -SSVGVMPTEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTD 97
S+ P T +E + DRPGL + + + + ++ NA+I T +R V +TD
Sbjct: 806 ISNDAQRPV---TVLELSAPDRPGLLARIGGIFLEFDLSLQNAKIATLGERVEDVFFITD 862
Query: 98 HSTGYAIKDPK 108
+ + DP+
Sbjct: 863 -ADNQPLSDPE 872
>sp|Q65SZ8|GLND_MANSM [Protein-PII] uridylyltransferase OS=Mannheimia succiniciproducens
(strain MBEL55E) GN=glnD PE=3 SV=1
Length = 875
Score = 54.7 bits (130), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 48/184 (26%), Positives = 81/184 (44%), Gaps = 41/184 (22%)
Query: 185 TVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGR-TEAYQEFYIRHVDGLPISSEAE 243
T + + KDRP L +V + + + + + T A+ F + +DG + + +
Sbjct: 699 TEVFIYCKDRPNLFLKVVAAIGNKKLSIHDAQIITSLDGYAFDSFIVTELDGSLL--KFD 756
Query: 244 RERVIQCLEAAIERRASEGL-------------------------------ELELCTEDR 272
R RV++ +A I S L E+EL T D+
Sbjct: 757 RRRVLE--KAIINSLNSNELTKLQGSENHKLQHFNVKTEVRFLNTEKTTHTEMELFTLDK 814
Query: 273 VGLLSDITRIFRENSLSIKRAEISTIGGKVKDTFYVTDVTGNPVDPKIIDSIRRQIGHTK 332
GLL+D++ +F E +LSI+ A+I+TIG K +D F +T+ G + + RQ K
Sbjct: 815 AGLLADVSLVFSELNLSIQNAKITTIGEKAQDFFILTNAKGEALSER-----ERQSLSEK 869
Query: 333 LQVK 336
LQ +
Sbjct: 870 LQAR 873
Score = 36.2 bits (82), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 49/83 (59%), Gaps = 3/83 (3%)
Query: 36 SLRSSVGVMPTEE--HTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVV 93
++++ V + TE+ HT +E D+ GL ++V V ++L+ ++ NA+I T ++A
Sbjct: 789 NVKTEVRFLNTEKTTHTEMELFTLDKAGLLADVSLVFSELNLSIQNAKITTIGEKAQDFF 848
Query: 94 HVTDHSTGYAIKDPKRLSTIKEL 116
+T+ + G A+ + +R S ++L
Sbjct: 849 ILTN-AKGEALSERERQSLSEKL 870
>sp|P36223|GLND_AZOVI [Protein-PII] uridylyltransferase OS=Azotobacter vinelandii GN=glnD
PE=3 SV=1
Length = 899
Score = 53.5 bits (127), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 50/83 (60%), Gaps = 7/83 (8%)
Query: 265 LELCTEDRVGLLSDITRIFRENSLSIKRAEISTIGGKVKDTFYVTDVTGNPV-DPKIIDS 323
LE+ DR GLL+ I +IF + LS++ A+I+T+G +V+D F+VTD P+ DP++
Sbjct: 817 LEIIAPDRPGLLARIGKIFLDFDLSLQNAKIATLGERVEDVFFVTDAHNQPLSDPELCAR 876
Query: 324 IRRQI------GHTKLQVKRSTI 340
++ I G + +Q R +I
Sbjct: 877 LQLAIAEQLADGDSYIQPSRISI 899
Score = 37.0 bits (84), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 58/131 (44%), Gaps = 27/131 (20%)
Query: 1 MDVFNVIDCDGKKI-----RDKEV-----------IDY---IQQRLETDA---SFAPSLR 38
+D + V+D DG I R +E+ DY IQ+R+ +FAP +
Sbjct: 746 LDTYIVLDADGGSIGNNPARIQEIRQGLVEALRNPADYPTIIQRRVPRQLKHFAFAPQVT 805
Query: 39 -SSVGVMPTEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTD 97
+ + P T +E DRPGL + + + D ++ NA+I T +R V VTD
Sbjct: 806 IQNDALRPV---TILEIIAPDRPGLLARIGKIFLDFDLSLQNAKIATLGERVEDVFFVTD 862
Query: 98 HSTGYAIKDPK 108
+ + DP+
Sbjct: 863 -AHNQPLSDPE 872
>sp|C1DSU8|GLND_AZOVD [Protein-PII] uridylyltransferase OS=Azotobacter vinelandii (strain
DJ / ATCC BAA-1303) GN=glnD PE=3 SV=1
Length = 899
Score = 53.5 bits (127), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 50/83 (60%), Gaps = 7/83 (8%)
Query: 265 LELCTEDRVGLLSDITRIFRENSLSIKRAEISTIGGKVKDTFYVTDVTGNPV-DPKIIDS 323
LE+ DR GLL+ I +IF + LS++ A+I+T+G +V+D F+VTD P+ DP++
Sbjct: 817 LEIIAPDRPGLLARIGKIFLDFDLSLQNAKIATLGERVEDVFFVTDAHNQPLSDPELCAR 876
Query: 324 IRRQI------GHTKLQVKRSTI 340
++ I G + +Q R +I
Sbjct: 877 LQLAIAEQLADGDSYIQPSRISI 899
Score = 37.0 bits (84), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 58/131 (44%), Gaps = 27/131 (20%)
Query: 1 MDVFNVIDCDGKKI-----RDKEV-----------IDY---IQQRLETDA---SFAPSLR 38
+D + V+D DG I R +E+ DY IQ+R+ +FAP +
Sbjct: 746 LDTYIVLDADGGSIGNNPARIQEIRQGLVEALRNPADYPTIIQRRVPRQLKHFAFAPQVT 805
Query: 39 -SSVGVMPTEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTD 97
+ + P T +E DRPGL + + + D ++ NA+I T +R V VTD
Sbjct: 806 IQNDALRPV---TILEIIAPDRPGLLARIGKIFLDFDLSLQNAKIATLGERVEDVFFVTD 862
Query: 98 HSTGYAIKDPK 108
+ + DP+
Sbjct: 863 -AHNQPLSDPE 872
>sp|Q3SWE0|GLND_NITWN [Protein-PII] uridylyltransferase OS=Nitrobacter winogradskyi
(strain Nb-255 / ATCC 25391) GN=glnD PE=3 SV=1
Length = 925
Score = 52.8 bits (125), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 44/76 (57%), Gaps = 1/76 (1%)
Query: 46 TEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIK 105
++ HT IE +G DRPGL ++ ++ L+ N+ +A + T +RA V +VTD G I
Sbjct: 844 SDRHTMIEVSGLDRPGLLFQLTTAISKLNLNIASAHVATFGERARDVFYVTD-LLGARIT 902
Query: 106 DPKRLSTIKELLFNVL 121
P R + IK L ++L
Sbjct: 903 APTRQAAIKRALVHLL 918
Score = 42.7 bits (99), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 49/217 (22%), Positives = 81/217 (37%), Gaps = 29/217 (13%)
Query: 37 LRSSVGVMPTEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVT 96
L +VG T + D P L S + A N+V+A+I+T D A
Sbjct: 725 LNINVGFDEARGVTELTILAADHPWLLSIIAGACASAGANIVDAQIYTTTDGQALDTIAI 784
Query: 97 DHSTGYAIKDPKRLSTIKELLFNVLRGYDDFRKAKTSLSPPGIMNRERRLHQIMFDDRDY 156
+ +R + I E++ VL G L P +M
Sbjct: 785 SREYERDEDEGRRAARIAEIIEQVLEG---------RLRLPDVMP--------------- 820
Query: 157 ERVEKAVG-RVEDKSSRPQVTVLNIEKD-YTVITMRSKDRPKLLFDIVCTLTDMQYVVFH 214
+A G R+ P+VT+ N D +T+I + DRP LLF + ++ + +
Sbjct: 821 ---SRAAGKRLRPFVVEPKVTINNQWSDRHTMIEVSGLDRPGLLFQLTTAISKLNLNIAS 877
Query: 215 GMVNTGRTEAYQEFYIRHVDGLPISSEAERERVIQCL 251
V T A FY+ + G I++ + + + L
Sbjct: 878 AHVATFGERARDVFYVTDLLGARITAPTRQAAIKRAL 914
Score = 42.0 bits (97), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 38/67 (56%), Gaps = 1/67 (1%)
Query: 265 LELCTEDRVGLLSDITRIFRENSLSIKRAEISTIGGKVKDTFYVTDVTGNPVD-PKIIDS 323
+E+ DR GLL +T + +L+I A ++T G + +D FYVTD+ G + P +
Sbjct: 850 IEVSGLDRPGLLFQLTTAISKLNLNIASAHVATFGERARDVFYVTDLLGARITAPTRQAA 909
Query: 324 IRRQIGH 330
I+R + H
Sbjct: 910 IKRALVH 916
>sp|Q3KHB4|GLND_PSEPF [Protein-PII] uridylyltransferase OS=Pseudomonas fluorescens
(strain Pf0-1) GN=glnD PE=3 SV=1
Length = 900
Score = 52.4 bits (124), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 44/69 (63%), Gaps = 5/69 (7%)
Query: 265 LELCTEDRVGLLSDITRIFRENSLSIKRAEISTIGGKVKDTFYVTDVTGNPV-DP----K 319
LEL DR GLL+ + IF E LS++ A+I+T+G +V+D F++TD P+ DP +
Sbjct: 817 LELTAPDRPGLLARVGGIFLEFDLSLQNAKIATLGERVEDVFFITDAHNQPLSDPLLCSR 876
Query: 320 IIDSIRRQI 328
+ D+I Q+
Sbjct: 877 LQDAIVEQL 885
Score = 40.0 bits (92), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 35/143 (24%), Positives = 61/143 (42%), Gaps = 25/143 (17%)
Query: 1 MDVFNVIDCDGKKIRD-----KEVIDYIQQRLETDA-----------------SFAPSLR 38
+D + V+D DG I D K++ D + + L A +FAP +
Sbjct: 746 LDTYIVLDTDGDSIGDNPVRVKQIRDGLTEALRNPADYPTIIQRRVPRQLKHFAFAPQV- 804
Query: 39 SSVGVMPTEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDH 98
++ T +E T DRPGL + V + + ++ NA+I T +R V +TD
Sbjct: 805 -TIHNDAQRPVTVLELTAPDRPGLLARVGGIFLEFDLSLQNAKIATLGERVEDVFFITD- 862
Query: 99 STGYAIKDPKRLSTIKELLFNVL 121
+ + DP S +++ + L
Sbjct: 863 AHNQPLSDPLLCSRLQDAIVEQL 885
>sp|A4VJR9|GLND_PSEU5 [Protein-PII] uridylyltransferase OS=Pseudomonas stutzeri (strain
A1501) GN=glnD PE=3 SV=1
Length = 900
Score = 52.4 bits (124), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 44/65 (67%), Gaps = 1/65 (1%)
Query: 265 LELCTEDRVGLLSDITRIFRENSLSIKRAEISTIGGKVKDTFYVTDVTGNPV-DPKIIDS 323
LE+ DR GLL+ + ++F + LS++ A+I+T+G +V+D F+VTD P+ DP++
Sbjct: 817 LEIIAPDRPGLLARVGQLFLDFDLSVQNAKIATLGERVEDVFFVTDADNQPLSDPQLCLR 876
Query: 324 IRRQI 328
+++ I
Sbjct: 877 LQQAI 881
Score = 38.1 bits (87), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 43/86 (50%), Gaps = 1/86 (1%)
Query: 49 HTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPK 108
T +E DRPGL + V + D +V NA+I T +R V VTD + + DP+
Sbjct: 814 QTILEIIAPDRPGLLARVGQLFLDFDLSVQNAKIATLGERVEDVFFVTD-ADNQPLSDPQ 872
Query: 109 RLSTIKELLFNVLRGYDDFRKAKTSL 134
+++ + L+ ++ + + +S+
Sbjct: 873 LCLRLQQAIIKELQQENEQQPSPSSI 898
>sp|Q2N784|GLND_ERYLH [Protein-PII] uridylyltransferase OS=Erythrobacter litoralis
(strain HTCC2594) GN=glnD PE=3 SV=1
Length = 919
Score = 52.0 bits (123), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 44/182 (24%), Positives = 77/182 (42%), Gaps = 34/182 (18%)
Query: 181 EKDYTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGRT-EAYQEFYIRHVDGLPIS 239
E+ T++T+ + D P L + I + + ++T R A + ++ G P +
Sbjct: 723 ERGATLVTVIAADHPGLFYRIAGGIHLAGGNIIDARIHTTRNGWAIDNYLVQDPVGQPFA 782
Query: 240 SEAERERVIQCLEAAIERR-------ASEGLE-------------------------LEL 267
E + R+ Q + AI R A L+ +E+
Sbjct: 783 EERQLARIEQAIADAIANRGELVPKLAKRPLKQTRAGAFDVRPRVLFDNDASGRFTVIEV 842
Query: 268 CTEDRVGLLSDITRIFRENSLSIKRAEISTIGGKVKDTFYVTDVTGNPV-DPKIIDSIRR 326
DR LL+ + R EN + ++ A I+ G + DTFYVTD+TG + D +D+IR+
Sbjct: 843 NARDRAALLNRLGRALFENQVIVQSAHITAYGERAADTFYVTDLTGAKITDESRMDTIRQ 902
Query: 327 QI 328
+
Sbjct: 903 AL 904
Score = 37.7 bits (86), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
Query: 50 TSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKR 109
T IE DR L + + L + V +A I + +RAA +VTD TG I D R
Sbjct: 838 TVIEVNARDRAALLNRLGRALFENQVIVQSAHITAYGERAADTFYVTD-LTGAKITDESR 896
Query: 110 LSTIKELLFNV 120
+ TI++ L +
Sbjct: 897 MDTIRQALLDA 907
Score = 37.4 bits (85), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 48/217 (22%), Positives = 89/217 (41%), Gaps = 33/217 (15%)
Query: 50 TSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKR 109
T + D PGLF + + N+++A I T + A ++ G + ++
Sbjct: 727 TLVTVIAADHPGLFYRIAGGIHLAGGNIIDARIHTTRNGWAIDNYLVQDPVGQPFAEERQ 786
Query: 110 LSTIKELLFNVL--RGYDDFRKAKTSL--SPPGIMNRERRLHQIMFDDRDYERVEKAVGR 165
L+ I++ + + + RG + AK L + G + R ++FD+
Sbjct: 787 LARIEQAIADAIANRGELVPKLAKRPLKQTRAGAFDVRPR---VLFDN------------ 831
Query: 166 VEDKSSRPQVTVLNIEKDYTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGRTEAY 225
D S R +TVI + ++DR LL + L + Q +V + A
Sbjct: 832 --DASGR-----------FTVIEVNARDRAALLNRLGRALFENQVIVQSAHITAYGERAA 878
Query: 226 QEFYIRHVDGLPISSEAERERVIQC-LEAAIERRASE 261
FY+ + G I+ E+ + + Q L+AA + R +E
Sbjct: 879 DTFYVTDLTGAKITDESRMDTIRQALLDAASDARQAE 915
>sp|Q02RD0|GLND_PSEAB [Protein-PII] uridylyltransferase OS=Pseudomonas aeruginosa (strain
UCBPP-PA14) GN=glnD PE=3 SV=1
Length = 900
Score = 52.0 bits (123), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 38/57 (66%), Gaps = 1/57 (1%)
Query: 265 LELCTEDRVGLLSDITRIFRENSLSIKRAEISTIGGKVKDTFYVTDVTGNPV-DPKI 320
LE+ DR GLL+ I IF + LS++ A+I+T+G +V+D FY+TD P+ DP +
Sbjct: 817 LEVIAPDRPGLLARIGGIFLDFDLSVQNAKIATLGERVEDVFYITDARNQPLADPDL 873
Score = 40.0 bits (92), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 59/137 (43%), Gaps = 28/137 (20%)
Query: 1 MDVFNVIDCDGKKIRD----------------KEVIDY---IQQRLETDA---SFAPSLR 38
+D + V+D DG I + K DY IQ+R+ +FAP +
Sbjct: 746 LDTYIVLDADGDSIGNNPERIAEIREGLIDALKNPDDYPTIIQRRVPRQLKHFAFAPQVT 805
Query: 39 SSVGVMPTEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDH 98
S + + + +E DRPGL + + + D +V NA+I T +R V ++TD
Sbjct: 806 ISTDAL--RQVSVLEVIAPDRPGLLARIGGIFLDFDLSVQNAKIATLGERVEDVFYITD- 862
Query: 99 STGYAIKDP---KRLST 112
+ + DP KRL
Sbjct: 863 ARNQPLADPDLCKRLQA 879
Score = 35.8 bits (81), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 43/197 (21%), Positives = 77/197 (39%), Gaps = 33/197 (16%)
Query: 47 EEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAI-K 105
E + I D+ F+ A + L+ ++ +A I T + ++ + G +I
Sbjct: 702 ESGSQIFIYAADQHDFFAVTVAAMDQLNLSIQDARIITSTSQFTLDTYIVLDADGDSIGN 761
Query: 106 DPKRLSTIKELLFNVLRGYDDFRKAKTSLSPPGIMNRE--RRLHQIMFDDRDYERVEKAV 163
+P+R++ I+E L + L+ DD+ P I+ R R+L F
Sbjct: 762 NPERIAEIREGLIDALKNPDDY---------PTIIQRRVPRQLKHFAF------------ 800
Query: 164 GRVEDKSSRPQVTV-LNIEKDYTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGRT 222
PQVT+ + + +V+ + + DRP LL I D V + + T
Sbjct: 801 --------APQVTISTDALRQVSVLEVIAPDRPGLLARIGGIFLDFDLSVQNAKIATLGE 852
Query: 223 EAYQEFYIRHVDGLPIS 239
FYI P++
Sbjct: 853 RVEDVFYITDARNQPLA 869
>sp|Q9Z9H0|GLND_PSEAE [Protein-PII] uridylyltransferase OS=Pseudomonas aeruginosa (strain
ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) GN=glnD
PE=3 SV=2
Length = 900
Score = 52.0 bits (123), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 38/57 (66%), Gaps = 1/57 (1%)
Query: 265 LELCTEDRVGLLSDITRIFRENSLSIKRAEISTIGGKVKDTFYVTDVTGNPV-DPKI 320
LE+ DR GLL+ I IF + LS++ A+I+T+G +V+D FY+TD P+ DP +
Sbjct: 817 LEVIAPDRPGLLARIGGIFLDFDLSVQNAKIATLGERVEDVFYITDARNQPLADPDL 873
Score = 40.0 bits (92), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 59/137 (43%), Gaps = 28/137 (20%)
Query: 1 MDVFNVIDCDGKKIRD----------------KEVIDY---IQQRLETDA---SFAPSLR 38
+D + V+D DG I + K DY IQ+R+ +FAP +
Sbjct: 746 LDTYIVLDADGDSIGNNPERIAEIREGLIDALKNPDDYPTIIQRRVPRQLKHFAFAPQVT 805
Query: 39 SSVGVMPTEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDH 98
S + + + +E DRPGL + + + D +V NA+I T +R V ++TD
Sbjct: 806 ISTDAL--RQVSVLEVIAPDRPGLLARIGGIFLDFDLSVQNAKIATLGERVEDVFYITD- 862
Query: 99 STGYAIKDP---KRLST 112
+ + DP KRL
Sbjct: 863 ARNQPLADPDLCKRLQA 879
Score = 35.8 bits (81), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 43/197 (21%), Positives = 77/197 (39%), Gaps = 33/197 (16%)
Query: 47 EEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAI-K 105
E + I D+ F+ A + L+ ++ +A I T + ++ + G +I
Sbjct: 702 ESGSQIFIYAADQHDFFAVTVAAMDQLNLSIQDARIITSTSQFTLDTYIVLDADGDSIGN 761
Query: 106 DPKRLSTIKELLFNVLRGYDDFRKAKTSLSPPGIMNRE--RRLHQIMFDDRDYERVEKAV 163
+P+R++ I+E L + L+ DD+ P I+ R R+L F
Sbjct: 762 NPERIAEIREGLIDALKNPDDY---------PTIIQRRVPRQLKHFAF------------ 800
Query: 164 GRVEDKSSRPQVTV-LNIEKDYTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGRT 222
PQVT+ + + +V+ + + DRP LL I D V + + T
Sbjct: 801 --------APQVTISTDALRQVSVLEVIAPDRPGLLARIGGIFLDFDLSVQNAKIATLGE 852
Query: 223 EAYQEFYIRHVDGLPIS 239
FYI P++
Sbjct: 853 RVEDVFYITDARNQPLA 869
>sp|B7V7F5|GLND_PSEA8 [Protein-PII] uridylyltransferase OS=Pseudomonas aeruginosa (strain
LESB58) GN=glnD PE=3 SV=1
Length = 900
Score = 52.0 bits (123), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 38/57 (66%), Gaps = 1/57 (1%)
Query: 265 LELCTEDRVGLLSDITRIFRENSLSIKRAEISTIGGKVKDTFYVTDVTGNPV-DPKI 320
LE+ DR GLL+ I IF + LS++ A+I+T+G +V+D FY+TD P+ DP +
Sbjct: 817 LEVIAPDRPGLLARIGGIFLDFDLSVQNAKIATLGERVEDVFYITDARNQPLADPDL 873
Score = 40.0 bits (92), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 59/137 (43%), Gaps = 28/137 (20%)
Query: 1 MDVFNVIDCDGKKIRD----------------KEVIDY---IQQRLETDA---SFAPSLR 38
+D + V+D DG I + K DY IQ+R+ +FAP +
Sbjct: 746 LDTYIVLDADGDSIGNNPERIAEIREGLIDALKNPDDYPTIIQRRVPRQLKHFAFAPQVT 805
Query: 39 SSVGVMPTEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDH 98
S + + + +E DRPGL + + + D +V NA+I T +R V ++TD
Sbjct: 806 ISTDAL--RQVSVLEVIAPDRPGLLARIGGIFLDFDLSVQNAKIATLGERVEDVFYITD- 862
Query: 99 STGYAIKDP---KRLST 112
+ + DP KRL
Sbjct: 863 ARNQPLADPDLCKRLQA 879
Score = 35.8 bits (81), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 43/197 (21%), Positives = 77/197 (39%), Gaps = 33/197 (16%)
Query: 47 EEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAI-K 105
E + I D+ F+ A + L+ ++ +A I T + ++ + G +I
Sbjct: 702 ESGSQIFIYAADQHDFFAVTVAAMDQLNLSIQDARIITSTSQFTLDTYIVLDADGDSIGN 761
Query: 106 DPKRLSTIKELLFNVLRGYDDFRKAKTSLSPPGIMNRE--RRLHQIMFDDRDYERVEKAV 163
+P+R++ I+E L + L+ DD+ P I+ R R+L F
Sbjct: 762 NPERIAEIREGLIDALKNPDDY---------PTIIQRRVPRQLKHFAF------------ 800
Query: 164 GRVEDKSSRPQVTV-LNIEKDYTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGRT 222
PQVT+ + + +V+ + + DRP LL I D V + + T
Sbjct: 801 --------APQVTISTDALRQVSVLEVIAPDRPGLLARIGGIFLDFDLSVQNAKIATLGE 852
Query: 223 EAYQEFYIRHVDGLPIS 239
FYI P++
Sbjct: 853 RVEDVFYITDARNQPLA 869
>sp|A6V1D0|GLND_PSEA7 [Protein-PII] uridylyltransferase OS=Pseudomonas aeruginosa (strain
PA7) GN=glnD PE=3 SV=1
Length = 900
Score = 52.0 bits (123), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 38/57 (66%), Gaps = 1/57 (1%)
Query: 265 LELCTEDRVGLLSDITRIFRENSLSIKRAEISTIGGKVKDTFYVTDVTGNPV-DPKI 320
LE+ DR GLL+ I IF + LS++ A+I+T+G +V+D FY+TD P+ DP +
Sbjct: 817 LEVIAPDRPGLLARIGGIFLDFDLSVQNAKIATLGERVEDVFYITDARNQPLADPDL 873
Score = 40.0 bits (92), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 59/137 (43%), Gaps = 28/137 (20%)
Query: 1 MDVFNVIDCDGKKIRD----------------KEVIDY---IQQRLETDA---SFAPSLR 38
+D + V+D DG I + K DY IQ+R+ +FAP +
Sbjct: 746 LDTYIVLDADGDSIGNNPERIAEIREGLIDALKNPDDYPTIIQRRVPRQLKHFAFAPQVT 805
Query: 39 SSVGVMPTEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDH 98
S + + + +E DRPGL + + + D +V NA+I T +R V ++TD
Sbjct: 806 ISTDAL--RQVSVLEVIAPDRPGLLARIGGIFLDFDLSVQNAKIATLGERVEDVFYITD- 862
Query: 99 STGYAIKDP---KRLST 112
+ + DP KRL
Sbjct: 863 ARNQPLADPDLCKRLQA 879
Score = 35.8 bits (81), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 43/197 (21%), Positives = 77/197 (39%), Gaps = 33/197 (16%)
Query: 47 EEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAI-K 105
E + I D+ F+ A + L+ ++ +A I T + ++ + G +I
Sbjct: 702 ESGSQIFIYAADQHDFFAVTVAAMDQLNLSIQDARIITSTSQFTLDTYIVLDADGDSIGN 761
Query: 106 DPKRLSTIKELLFNVLRGYDDFRKAKTSLSPPGIMNRE--RRLHQIMFDDRDYERVEKAV 163
+P+R++ I+E L + L+ DD+ P I+ R R+L F
Sbjct: 762 NPERIAEIREGLIDALKNPDDY---------PTIIQRRVPRQLKHFAF------------ 800
Query: 164 GRVEDKSSRPQVTV-LNIEKDYTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGRT 222
PQVT+ + + +V+ + + DRP LL I D V + + T
Sbjct: 801 --------APQVTISTDALRQVSVLEVIAPDRPGLLARIGGIFLDFDLSVQNAKIATLGE 852
Query: 223 EAYQEFYIRHVDGLPIS 239
FYI P++
Sbjct: 853 RVEDVFYITDARNQPLA 869
>sp|P62223|GLND_RHOPA [Protein-PII] uridylyltransferase OS=Rhodopseudomonas palustris
(strain ATCC BAA-98 / CGA009) GN=glnD PE=3 SV=1
Length = 929
Score = 51.6 bits (122), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 46/84 (54%), Gaps = 1/84 (1%)
Query: 46 TEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIK 105
++ +T IE +G DRPGL ++ ++ L+ N+ +A + T +RA V +VTD G I
Sbjct: 844 SDRYTVIEVSGLDRPGLLYQLTTAISKLNLNIASAHVATFGERARDVFYVTD-LLGAQIT 902
Query: 106 DPKRLSTIKELLFNVLRGYDDFRK 129
P R + IK L ++L D K
Sbjct: 903 APTRQAAIKRALVHLLANGDAAEK 926
Score = 43.1 bits (100), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 38/67 (56%), Gaps = 1/67 (1%)
Query: 265 LELCTEDRVGLLSDITRIFRENSLSIKRAEISTIGGKVKDTFYVTDVTGNPVD-PKIIDS 323
+E+ DR GLL +T + +L+I A ++T G + +D FYVTD+ G + P +
Sbjct: 850 IEVSGLDRPGLLYQLTTAISKLNLNIASAHVATFGERARDVFYVTDLLGAQITAPTRQAA 909
Query: 324 IRRQIGH 330
I+R + H
Sbjct: 910 IKRALVH 916
Score = 39.7 bits (91), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 48/219 (21%), Positives = 83/219 (37%), Gaps = 36/219 (16%)
Query: 40 SVGVMPTEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHND-RAAAVVHVT-- 96
+VG T + D P L S + A N+V+A+I+T D RA + ++
Sbjct: 725 NVGFDEARAVTELTILAVDHPWLLSVIAGACASAGANIVDAQIYTTTDGRALDTISISRE 784
Query: 97 ---DHSTGYAIKDPKRLSTIKELLFNVLRGYDDFRKAKTSLSPPGIMNRERRLHQIMFDD 153
D G +R + I E + VL G +A + G + +L + +
Sbjct: 785 YDRDEDEG------RRATRIGETIEEVLEGKLRLPEAVARRASSG---SKAKLRAFVVE- 834
Query: 154 RDYERVEKAVGRVEDKSSRPQVTVLNIEKD-YTVITMRSKDRPKLLFDIVCTLTDMQYVV 212
P+V + N D YTVI + DRP LL+ + ++ + +
Sbjct: 835 -------------------PEVEINNNWSDRYTVIEVSGLDRPGLLYQLTTAISKLNLNI 875
Query: 213 FHGMVNTGRTEAYQEFYIRHVDGLPISSEAERERVIQCL 251
V T A FY+ + G I++ + + + L
Sbjct: 876 ASAHVATFGERARDVFYVTDLLGAQITAPTRQAAIKRAL 914
>sp|A6U5G1|GLND_SINMW [Protein-PII] uridylyltransferase OS=Sinorhizobium medicae (strain
WSM419) GN=glnD PE=3 SV=1
Length = 949
Score = 51.6 bits (122), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/46 (52%), Positives = 32/46 (69%)
Query: 271 DRVGLLSDITRIFRENSLSIKRAEISTIGGKVKDTFYVTDVTGNPV 316
DR GLLS++T + + SL I A I+T G KV DTFYVTD+ G+ +
Sbjct: 852 DRTGLLSEVTAVLSDLSLDIASAHITTFGEKVIDTFYVTDLVGSKI 897
Score = 45.4 bits (106), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 34/91 (37%), Positives = 44/91 (48%), Gaps = 4/91 (4%)
Query: 50 TSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKR 109
T IE G DR GL SEV AVL+DL ++ +A I T ++ +VTD G I R
Sbjct: 844 TVIEVEGLDRTGLLSEVTAVLSDLSLDIASAHITTFGEKVIDTFYVTD-LVGSKITSENR 902
Query: 110 LSTIKELLFNVLRGYDDFRKAKTSLSPPGIM 140
I L VL G D + + P GI+
Sbjct: 903 QMNIAARLKAVLAGEVDEARERM---PSGII 930
Score = 43.1 bits (100), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 49/216 (22%), Positives = 85/216 (39%), Gaps = 26/216 (12%)
Query: 50 TSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKR 109
T I D P L + + A N+V A+I T +D A + + A + +R
Sbjct: 733 TEITVLSPDHPRLLTVIAGACAAAGANIVGAQIHTTSDGRALDTILVNREFSVAEDETRR 792
Query: 110 LSTIKELLFNVLRGYDDFRKAKTSLSPPGIMNRERRLHQIMFDDRDYERVEKAVGRVEDK 169
++I +L+ +VL G P I +R R + R
Sbjct: 793 AASIGKLIEDVLSGRKKL--------PDVIASRTR-----------------SKKRSRAF 827
Query: 170 SSRPQVTVLN-IEKDYTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEF 228
+ P+VT+ N + +TVI + DR LL ++ L+D+ + + T + F
Sbjct: 828 TVTPEVTISNALSNKFTVIEVEGLDRTGLLSEVTAVLSDLSLDIASAHITTFGEKVIDTF 887
Query: 229 YIRHVDGLPISSEAERERVIQCLEAAIERRASEGLE 264
Y+ + G I+SE + + L+A + E E
Sbjct: 888 YVTDLVGSKITSENRQMNIAARLKAVLAGEVDEARE 923
>sp|Q9RAE4|GLND_RHILV [Protein-PII] uridylyltransferase OS=Rhizobium leguminosarum bv.
viciae GN=glnD PE=3 SV=2
Length = 944
Score = 51.6 bits (122), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/46 (54%), Positives = 32/46 (69%)
Query: 271 DRVGLLSDITRIFRENSLSIKRAEISTIGGKVKDTFYVTDVTGNPV 316
DR GLLS+IT + + SL I+ A I+T G KV DTFYVTD+ G +
Sbjct: 846 DRPGLLSEITAVLSDLSLDIQSARITTFGEKVIDTFYVTDLVGQKI 891
Score = 48.5 bits (114), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 52/216 (24%), Positives = 93/216 (43%), Gaps = 32/216 (14%)
Query: 50 TSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHND-RAAAVVHVTDHSTGYAIKDPK 108
T I D P L + + A N+V+A+I+T +D RA +HV+ T A + +
Sbjct: 727 TEITVLSPDHPRLLAVIAGACAAAGANIVDAQIFTTSDGRALDTIHVSREFTDDA-DELR 785
Query: 109 RLSTIKELLFNVLRGYDDFRKAKTSLSPPGIMNRERRLHQIMFDDRDYERVEKAVGRVED 168
R +TI ++ +VL G +RL +++ +A R +
Sbjct: 786 RAATIGRMIEDVLSG-------------------RKRLPEVI--------ATRARNRKKS 818
Query: 169 KSS--RPQVTVLN-IEKDYTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGRTEAY 225
K+ P V + N + +TVI + DRP LL +I L+D+ + + T +
Sbjct: 819 KAFVIPPSVNITNSLSNKFTVIEVECLDRPGLLSEITAVLSDLSLDIQSARITTFGEKVI 878
Query: 226 QEFYIRHVDGLPISSEAERERVIQCLEAAIERRASE 261
FY+ + G IS +++R + ++A + E
Sbjct: 879 DTFYVTDLVGQKISGDSKRANITARMKAVMAEEEDE 914
Score = 42.7 bits (99), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 47/102 (46%), Gaps = 9/102 (8%)
Query: 46 TEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIK 105
+ + T IE DRPGL SE+ AVL+DL ++ +A I T ++ +VTD
Sbjct: 834 SNKFTVIEVECLDRPGLLSEITAVLSDLSLDIQSARITTFGEKVIDTFYVTDLVGQKISG 893
Query: 106 DPKRLSTIKELLFNVLRGYDDFRK---------AKTSLSPPG 138
D KR + + + D+ R+ A T+ +PP
Sbjct: 894 DSKRANITARMKAVMAEEEDELRERMPSGIIAPAATARTPPA 935
>sp|Q5NPH0|GLND_ZYMMO [Protein-PII] uridylyltransferase OS=Zymomonas mobilis subsp.
mobilis (strain ATCC 31821 / ZM4 / CP4) GN=glnD PE=3
SV=1
Length = 926
Score = 51.6 bits (122), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 51/209 (24%), Positives = 84/209 (40%), Gaps = 26/209 (12%)
Query: 23 IQQRLETDASFAPSLRSSVGVMPTEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEI 82
+QQ ++TD S S+ MP + T I D PG F + + N+++A I
Sbjct: 710 MQQIIDTD-SKGQSISVRGHEMPAYDATMISLYAIDHPGFFYRISGAIHATGGNILDARI 768
Query: 83 WTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLRGYDDFRKAKTSLSPPGIMNR 142
T D A + +S G IK + L+ + + + + + +L PP + R
Sbjct: 769 HTTRDGMAMDNLLVQNSQGGMIKSGEHLNRMMQAIEDAATSHIRSSNKLAALRPP-LFWR 827
Query: 143 ERRLHQIMFDDRDYERVEKAVGRVEDKSSRPQVTVLNIEKD-YTVITMRSKDRPKLLFDI 201
+ H VE P V + N D +TVI + ++DRP LL D+
Sbjct: 828 GKAFH------------------VE-----PLVFIDNQASDRFTVIEVNAQDRPALLHDL 864
Query: 202 VCTLTDMQYVVFHGMVNTGRTEAYQEFYI 230
C L + + + + T A FY+
Sbjct: 865 GCALFNARLTISSAHIATYGERAVDVFYV 893
Score = 36.6 bits (83), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 36/168 (21%), Positives = 65/168 (38%), Gaps = 34/168 (20%)
Query: 183 DYTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGR-TEAYQEFYIRHVDGLPISSE 241
D T+I++ + D P + I + + ++T R A +++ G I S
Sbjct: 734 DATMISLYAIDHPGFFYRISGAIHATGGNILDARIHTTRDGMAMDNLLVQNSQGGMIKSG 793
Query: 242 AERERVIQCLEAA--------------------------------IERRASEGLE-LELC 268
R++Q +E A I+ +AS+ +E+
Sbjct: 794 EHLNRMMQAIEDAATSHIRSSNKLAALRPPLFWRGKAFHVEPLVFIDNQASDRFTVIEVN 853
Query: 269 TEDRVGLLSDITRIFRENSLSIKRAEISTIGGKVKDTFYVTDVTGNPV 316
+DR LL D+ L+I A I+T G + D FYV+D+ + +
Sbjct: 854 AQDRPALLHDLGCALFNARLTISSAHIATYGERAVDVFYVSDLFSHKI 901
>sp|P56884|GLND_RHIME [Protein-PII] uridylyltransferase OS=Rhizobium meliloti (strain
1021) GN=glnD PE=3 SV=1
Length = 949
Score = 51.6 bits (122), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/46 (52%), Positives = 32/46 (69%)
Query: 271 DRVGLLSDITRIFRENSLSIKRAEISTIGGKVKDTFYVTDVTGNPV 316
DR GLLS++T + + SL I A I+T G KV DTFYVTD+ G+ +
Sbjct: 852 DRTGLLSEVTAVLSDLSLDIASAHITTFGEKVIDTFYVTDLVGSKI 897
Score = 45.8 bits (107), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 34/91 (37%), Positives = 44/91 (48%), Gaps = 4/91 (4%)
Query: 50 TSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKR 109
T IE G DR GL SEV AVL+DL ++ +A I T ++ +VTD G I R
Sbjct: 844 TVIEVEGLDRTGLLSEVTAVLSDLSLDIASAHITTFGEKVIDTFYVTD-LVGSKITSENR 902
Query: 110 LSTIKELLFNVLRGYDDFRKAKTSLSPPGIM 140
I L VL G D + + P GI+
Sbjct: 903 QMNIAARLKAVLAGEVDEARERM---PSGII 930
Score = 43.5 bits (101), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 50/216 (23%), Positives = 89/216 (41%), Gaps = 26/216 (12%)
Query: 50 TSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKR 109
T I D P L + + A N+V A+I T +D A + + A + +R
Sbjct: 733 TEITVLSPDHPRLLTVIAGACAAAGANIVGAQIHTTSDGRALDTILVNREFSVAEDETRR 792
Query: 110 LSTIKELLFNVLRGYDDFRKAKTSLSPPGIMNRERRLHQIMFDDRDYERVEKAVGRVEDK 169
++I +L+ +VL G +RL +++ RV+K R
Sbjct: 793 AASIGKLIEDVLSG-------------------RKRLPEVI---ASRTRVKK---RSRAF 827
Query: 170 SSRPQVTVLN-IEKDYTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEF 228
+ P+VT+ N + +TVI + DR LL ++ L+D+ + + T + F
Sbjct: 828 TVTPEVTISNTLSNKFTVIEVEGLDRTGLLSEVTAVLSDLSLDIASAHITTFGEKVIDTF 887
Query: 229 YIRHVDGLPISSEAERERVIQCLEAAIERRASEGLE 264
Y+ + G I+SE + + L+A + E E
Sbjct: 888 YVTDLVGSKITSENRQMNIAARLKAVLAGEVDEARE 923
>sp|A5UBF9|GLND_HAEIE [Protein-PII] uridylyltransferase OS=Haemophilus influenzae (strain
PittEE) GN=glnD PE=3 SV=1
Length = 863
Score = 49.7 bits (117), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 45/73 (61%), Gaps = 4/73 (5%)
Query: 261 EGLELELCTEDRVGLLSDITRIFRENSLSIKRAEISTIGGKVKDTFYVTDVTGNPVDPKI 320
E E+EL D+ GLL+ +++IF E +L++ A+I+T+G K +D F +T+ G +D +
Sbjct: 791 EHTEMELVALDKAGLLAQVSQIFSELNLNLLNAKITTVGEKAEDFFILTNQFGQALDSQQ 850
Query: 321 IDSIR----RQIG 329
+ +R R IG
Sbjct: 851 REILRNVLYRNIG 863
Score = 42.0 bits (97), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 43/75 (57%), Gaps = 6/75 (8%)
Query: 47 EEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKD 106
+EHT +E D+ GL ++V + ++L+ N++NA+I T ++A +T+ G A+
Sbjct: 790 KEHTEMELVALDKAGLLAQVSQIFSELNLNLLNAKITTVGEKAEDFFILTNQ-FGQALDS 848
Query: 107 PKRLSTIKELLFNVL 121
+R E+L NVL
Sbjct: 849 QQR-----EILRNVL 858
>sp|Q53245|GLND_RHITR [Protein-PII] uridylyltransferase OS=Rhizobium tropici GN=glnD PE=3
SV=2
Length = 948
Score = 49.7 bits (117), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/52 (48%), Positives = 34/52 (65%)
Query: 265 LELCTEDRVGLLSDITRIFRENSLSIKRAEISTIGGKVKDTFYVTDVTGNPV 316
+E+ DR GLLS+IT + + SL I+ A I+T G KV DTFYV D+ G +
Sbjct: 841 IEVECLDRPGLLSEITAVLSDLSLDIQSARITTFGEKVIDTFYVADLVGQKI 892
Score = 45.1 bits (105), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 48/95 (50%), Gaps = 4/95 (4%)
Query: 46 TEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIK 105
+ + T IE DRPGL SE+ AVL+DL ++ +A I T ++ +V D G I
Sbjct: 835 SNKFTVIEVECLDRPGLLSEITAVLSDLSLDIQSARITTFGEKVIDTFYVAD-LVGQKIS 893
Query: 106 DPKRLSTIKELLFNVLRGYDDFRKAKTSLSPPGIM 140
+ R + I L V+ G +D + + P GI+
Sbjct: 894 NENRRAYITARLKAVMAGEEDEMRERM---PSGII 925
Score = 38.9 bits (89), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 40/84 (47%), Gaps = 1/84 (1%)
Query: 173 PQVTVLN-IEKDYTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIR 231
P V + N + +TVI + DRP LL +I L+D+ + + T + FY+
Sbjct: 826 PSVIITNSLSNKFTVIEVECLDRPGLLSEITAVLSDLSLDIQSARITTFGEKVIDTFYVA 885
Query: 232 HVDGLPISSEAERERVIQCLEAAI 255
+ G IS+E R + L+A +
Sbjct: 886 DLVGQKISNENRRAYITARLKAVM 909
>sp|A6WV84|GLND_OCHA4 [Protein-PII] uridylyltransferase OS=Ochrobactrum anthropi (strain
ATCC 49188 / DSM 6882 / NCTC 12168) GN=glnD PE=3 SV=1
Length = 934
Score = 49.7 bits (117), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 40/74 (54%), Gaps = 1/74 (1%)
Query: 50 TSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKR 109
T IE G DRPGL SE+ +++DL ++ +A I T ++ +VTD G+ I + R
Sbjct: 847 TVIEVEGLDRPGLLSELTGLISDLSLDIASAHITTFGEKVIDSFYVTD-LVGHKISNATR 905
Query: 110 LSTIKELLFNVLRG 123
I+ L VL G
Sbjct: 906 QGNIRRKLLGVLSG 919
Score = 48.1 bits (113), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 32/46 (69%)
Query: 271 DRVGLLSDITRIFRENSLSIKRAEISTIGGKVKDTFYVTDVTGNPV 316
DR GLLS++T + + SL I A I+T G KV D+FYVTD+ G+ +
Sbjct: 855 DRPGLLSELTGLISDLSLDIASAHITTFGEKVIDSFYVTDLVGHKI 900
Score = 35.4 bits (80), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 43/195 (22%), Positives = 75/195 (38%), Gaps = 26/195 (13%)
Query: 47 EEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKD 106
E T I D P L S + A N+V+A+I+T D A + +
Sbjct: 733 EAVTEITVLAPDHPRLLSIITGACAAAGANIVDAQIFTTGDGRALDTILISREFDTDDDE 792
Query: 107 PKRLSTIKELLFNVLRGYDDFRKAKTSLSPPGIMNRERRLHQIMFDDRDYERVEKAVGRV 166
+R + +++ +VL G + P +R KA +V
Sbjct: 793 RRRAERVGKVIEDVLSGKAHLPDVLAKRTKP-------------------KRAAKAF-KV 832
Query: 167 EDKSSRPQVTVLN-IEKDYTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGRTEAY 225
E P+V + N + +TVI + DRP LL ++ ++D+ + + T +
Sbjct: 833 E-----PRVEINNTLSNKFTVIEVEGLDRPGLLSELTGLISDLSLDIASAHITTFGEKVI 887
Query: 226 QEFYIRHVDGLPISS 240
FY+ + G IS+
Sbjct: 888 DSFYVTDLVGHKISN 902
>sp|Q8UIF1|GLND_AGRT5 [Protein-PII] uridylyltransferase OS=Agrobacterium tumefaciens
(strain C58 / ATCC 33970) GN=glnD PE=3 SV=1
Length = 942
Score = 49.3 bits (116), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/52 (50%), Positives = 34/52 (65%)
Query: 265 LELCTEDRVGLLSDITRIFRENSLSIKRAEISTIGGKVKDTFYVTDVTGNPV 316
+E+ DR GLL+D+T + + SL I A I+T G KV DTFYVTD+ G V
Sbjct: 842 IEVECLDRPGLLADMTAVIADLSLDIHSARITTFGEKVIDTFYVTDLFGQKV 893
Score = 42.4 bits (98), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 55/102 (53%), Gaps = 3/102 (2%)
Query: 25 QRLETDASFAPSLRSSVGVMPTEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWT 84
+R ++ + PS+ S G+ + + T IE DRPGL +++ AV+ADL ++ +A I T
Sbjct: 817 RRKKSAFTIPPSVTISNGL--SNKFTVIEVECLDRPGLLADMTAVIADLSLDIHSARITT 874
Query: 85 HNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLRGYDD 126
++ +VTD G + + R ++I + L V+ +D
Sbjct: 875 FGEKVIDTFYVTD-LFGQKVTNDNRQASIAQRLKAVMSEQED 915
Score = 39.3 bits (90), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 43/90 (47%), Gaps = 1/90 (1%)
Query: 173 PQVTVLN-IEKDYTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIR 231
P VT+ N + +TVI + DRP LL D+ + D+ + + T + FY+
Sbjct: 827 PSVTISNGLSNKFTVIEVECLDRPGLLADMTAVIADLSLDIHSARITTFGEKVIDTFYVT 886
Query: 232 HVDGLPISSEAERERVIQCLEAAIERRASE 261
+ G ++++ + + Q L+A + + E
Sbjct: 887 DLFGQKVTNDNRQASIAQRLKAVMSEQEDE 916
>sp|B9JZI2|GLND_AGRVS [Protein-PII] uridylyltransferase OS=Agrobacterium vitis (strain S4
/ ATCC BAA-846) GN=glnD PE=3 SV=1
Length = 941
Score = 49.3 bits (116), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 34/52 (65%)
Query: 265 LELCTEDRVGLLSDITRIFRENSLSIKRAEISTIGGKVKDTFYVTDVTGNPV 316
+E+ DR+GLL+++T + + SL I A I+T G KV DTFYV D+ G +
Sbjct: 841 IEIECLDRIGLLAEVTAVLADLSLDIHSARITTFGEKVIDTFYVIDLVGQKI 892
Score = 36.6 bits (83), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
Query: 46 TEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIK 105
+ + T IE DR GL +EV AVLADL ++ +A I T ++ +V D G I
Sbjct: 835 SNKFTVIEIECLDRIGLLAEVTAVLADLSLDIHSARITTFGEKVIDTFYVID-LVGQKIT 893
Query: 106 DPKRLSTI 113
+ R +I
Sbjct: 894 NENRQGSI 901
>sp|Q9AC53|GLND_CAUCR [Protein-PII] uridylyltransferase OS=Caulobacter crescentus (strain
ATCC 19089 / CB15) GN=glnD PE=3 SV=1
Length = 940
Score = 48.9 bits (115), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 44/163 (26%), Positives = 64/163 (39%), Gaps = 33/163 (20%)
Query: 187 ITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGRT-EAYQEFYIRHVDGLPISSEAER- 244
+ + +KDR L D+ ++ + V V T R +A FY++ V G P E R
Sbjct: 738 VVIAAKDRRGLFADLALAISSLGGNVVGARVFTSRQGQALDVFYVQDVTGAPFGCENPRA 797
Query: 245 -ERVIQCLEAAIE--------RRASEGLE----------------------LELCTEDRV 273
R+ LEAA + RR SE +E DR
Sbjct: 798 LRRLADALEAAGKGDALAVEPRRGSEQTRAAAFAIAPSVTIDNDASNDATVVEASGRDRP 857
Query: 274 GLLSDITRIFRENSLSIKRAEISTIGGKVKDTFYVTDVTGNPV 316
GLL + + +++LSI+ A I G + D FYV G V
Sbjct: 858 GLLHALAKTLADSALSIQSAHIDGYGERAVDAFYVQTTEGGKV 900
Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/200 (22%), Positives = 73/200 (36%), Gaps = 38/200 (19%)
Query: 43 VMPTEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTG- 101
V P + DR GLF+++ ++ L NVV A ++T A V TG
Sbjct: 729 VRPGSNAAEVVIAAKDRRGLFADLALAISSLGGNVVGARVFTSRQGQALDVFYVQDVTGA 788
Query: 102 -YAIKDPKRLSTIKELLFNVLRGYDDFRKAKTSLSPPGIMNRERRLHQIMFDDRDYERVE 160
+ ++P+ L + + L +G D VE
Sbjct: 789 PFGCENPRALRRLADALEAAGKG-------------------------------DALAVE 817
Query: 161 KAVGRVEDKSSR----PQVTVLN-IEKDYTVITMRSKDRPKLLFDIVCTLTDMQYVVFHG 215
G + +++ P VT+ N D TV+ +DRP LL + TL D +
Sbjct: 818 PRRGSEQTRAAAFAIAPSVTIDNDASNDATVVEASGRDRPGLLHALAKTLADSALSIQSA 877
Query: 216 MVNTGRTEAYQEFYIRHVDG 235
++ A FY++ +G
Sbjct: 878 HIDGYGERAVDAFYVQTTEG 897
Score = 34.7 bits (78), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 35/71 (49%)
Query: 31 ASFAPSLRSSVGVMPTEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAA 90
A+FA + ++ + + T +E +G DRPGL + LAD ++ +A I + +RA
Sbjct: 828 AAFAIAPSVTIDNDASNDATVVEASGRDRPGLLHALAKTLADSALSIQSAHIDGYGERAV 887
Query: 91 AVVHVTDHSTG 101
+V G
Sbjct: 888 DAFYVQTTEGG 898
>sp|B8GWX0|GLND_CAUCN [Protein-PII] uridylyltransferase OS=Caulobacter crescentus (strain
NA1000 / CB15N) GN=glnD PE=3 SV=1
Length = 940
Score = 48.9 bits (115), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 44/163 (26%), Positives = 64/163 (39%), Gaps = 33/163 (20%)
Query: 187 ITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGRT-EAYQEFYIRHVDGLPISSEAER- 244
+ + +KDR L D+ ++ + V V T R +A FY++ V G P E R
Sbjct: 738 VVIAAKDRRGLFADLALAISSLGGNVVGARVFTSRQGQALDVFYVQDVTGAPFGCENPRA 797
Query: 245 -ERVIQCLEAAIE--------RRASEGLE----------------------LELCTEDRV 273
R+ LEAA + RR SE +E DR
Sbjct: 798 LRRLADALEAAGKGDALAVEPRRGSEQTRAAAFAIAPSVTIDNDASNDATVVEASGRDRP 857
Query: 274 GLLSDITRIFRENSLSIKRAEISTIGGKVKDTFYVTDVTGNPV 316
GLL + + +++LSI+ A I G + D FYV G V
Sbjct: 858 GLLHALAKTLADSALSIQSAHIDGYGERAVDAFYVQTTEGGKV 900
Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/200 (22%), Positives = 73/200 (36%), Gaps = 38/200 (19%)
Query: 43 VMPTEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTG- 101
V P + DR GLF+++ ++ L NVV A ++T A V TG
Sbjct: 729 VRPGSNAAEVVIAAKDRRGLFADLALAISSLGGNVVGARVFTSRQGQALDVFYVQDVTGA 788
Query: 102 -YAIKDPKRLSTIKELLFNVLRGYDDFRKAKTSLSPPGIMNRERRLHQIMFDDRDYERVE 160
+ ++P+ L + + L +G D VE
Sbjct: 789 PFGCENPRALRRLADALEAAGKG-------------------------------DALAVE 817
Query: 161 KAVGRVEDKSSR----PQVTVLN-IEKDYTVITMRSKDRPKLLFDIVCTLTDMQYVVFHG 215
G + +++ P VT+ N D TV+ +DRP LL + TL D +
Sbjct: 818 PRRGSEQTRAAAFAIAPSVTIDNDASNDATVVEASGRDRPGLLHALAKTLADSALSIQSA 877
Query: 216 MVNTGRTEAYQEFYIRHVDG 235
++ A FY++ +G
Sbjct: 878 HIDGYGERAVDAFYVQTTEG 897
Score = 34.7 bits (78), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 35/71 (49%)
Query: 31 ASFAPSLRSSVGVMPTEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAA 90
A+FA + ++ + + T +E +G DRPGL + LAD ++ +A I + +RA
Sbjct: 828 AAFAIAPSVTIDNDASNDATVVEASGRDRPGLLHALAKTLADSALSIQSAHIDGYGERAV 887
Query: 91 AVVHVTDHSTG 101
+V G
Sbjct: 888 DAFYVQTTEGG 898
>sp|Q4QJM6|GLND_HAEI8 [Protein-PII] uridylyltransferase OS=Haemophilus influenzae (strain
86-028NP) GN=glnD PE=3 SV=1
Length = 863
Score = 48.9 bits (115), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 47/79 (59%), Gaps = 4/79 (5%)
Query: 255 IERRASEGLELELCTEDRVGLLSDITRIFRENSLSIKRAEISTIGGKVKDTFYVTDVTGN 314
++ E ++EL D+ GLL+ +++IF E +L++ A+I+T+G K +D F +T+ G
Sbjct: 785 LQENKKEHTQMELVALDKAGLLAQVSQIFTELNLNLLNAKITTVGEKAEDFFILTNQFGQ 844
Query: 315 PVDPKIIDSIR----RQIG 329
+D + + +R R IG
Sbjct: 845 ALDSQQREILRNVLYRNIG 863
Score = 41.2 bits (95), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 42/75 (56%), Gaps = 6/75 (8%)
Query: 47 EEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKD 106
+EHT +E D+ GL ++V + +L+ N++NA+I T ++A +T+ G A+
Sbjct: 790 KEHTQMELVALDKAGLLAQVSQIFTELNLNLLNAKITTVGEKAEDFFILTNQ-FGQALDS 848
Query: 107 PKRLSTIKELLFNVL 121
+R E+L NVL
Sbjct: 849 QQR-----EILRNVL 858
>sp|Q8G312|GLND_BRUSU [Protein-PII] uridylyltransferase OS=Brucella suis biovar 1 (strain
1330) GN=glnD PE=3 SV=1
Length = 934
Score = 48.1 bits (113), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 32/46 (69%)
Query: 271 DRVGLLSDITRIFRENSLSIKRAEISTIGGKVKDTFYVTDVTGNPV 316
DR GLLS++T + + SL I A I+T G KV D+FYVTD+ G+ +
Sbjct: 855 DRPGLLSELTGLISDLSLDIASAHITTFGEKVIDSFYVTDLVGHKI 900
Score = 47.0 bits (110), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 45/90 (50%), Gaps = 1/90 (1%)
Query: 32 SFAPSLRSSVGVMPTEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAA 91
+F R + + + T IE G DRPGL SE+ +++DL ++ +A I T ++
Sbjct: 829 AFKVEPRVEINNTLSNKFTVIEVEGLDRPGLLSELTGLISDLSLDIASAHITTFGEKVID 888
Query: 92 VVHVTDHSTGYAIKDPKRLSTIKELLFNVL 121
+VTD G+ I + R IK L +L
Sbjct: 889 SFYVTD-LVGHKISNATRQGNIKRKLLALL 917
Score = 32.3 bits (72), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 48/212 (22%), Positives = 85/212 (40%), Gaps = 30/212 (14%)
Query: 47 EEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIW-THNDRAAAVVHVTDHSTGYAIK 105
E T I D P L S + A N+V+A+I+ T N RA + + S +
Sbjct: 733 EAVTEITVLAPDHPRLLSVITGACAAAGGNIVDAQIFTTSNGRALDTILI---SREFDTD 789
Query: 106 DP--KRLSTIKELLFNVLRGYDDFRKAKTSLSPPGIMNRERRLHQIMFDDRDYERVEKAV 163
D +R + +++ +VL G K L P + R + + R K
Sbjct: 790 DDERRRAERVGKVIEDVLSG-------KAHL-PDMLAKRTK--------PKKAARAFKVE 833
Query: 164 GRVEDKSSRPQVTVLNIEKDYTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGRTE 223
RVE ++ + +TVI + DRP LL ++ ++D+ + + T +
Sbjct: 834 PRVEINNT--------LSNKFTVIEVEGLDRPGLLSELTGLISDLSLDIASAHITTFGEK 885
Query: 224 AYQEFYIRHVDGLPISSEAERERVIQCLEAAI 255
FY+ + G IS+ + + + L A +
Sbjct: 886 VIDSFYVTDLVGHKISNATRQGNIKRKLLALL 917
>sp|C0RGK0|GLND_BRUMB [Protein-PII] uridylyltransferase OS=Brucella melitensis biotype 2
(strain ATCC 23457) GN=glnD PE=3 SV=1
Length = 934
Score = 48.1 bits (113), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 32/46 (69%)
Query: 271 DRVGLLSDITRIFRENSLSIKRAEISTIGGKVKDTFYVTDVTGNPV 316
DR GLLS++T + + SL I A I+T G KV D+FYVTD+ G+ +
Sbjct: 855 DRPGLLSELTGLISDLSLDIASAHITTFGEKVIDSFYVTDLVGHKI 900
Score = 47.0 bits (110), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 45/90 (50%), Gaps = 1/90 (1%)
Query: 32 SFAPSLRSSVGVMPTEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAA 91
+F R + + + T IE G DRPGL SE+ +++DL ++ +A I T ++
Sbjct: 829 AFKVEPRVEINNTLSNKFTVIEVEGLDRPGLLSELTGLISDLSLDIASAHITTFGEKVID 888
Query: 92 VVHVTDHSTGYAIKDPKRLSTIKELLFNVL 121
+VTD G+ I + R IK L +L
Sbjct: 889 SFYVTD-LVGHKISNATRQGNIKRKLLALL 917
Score = 33.9 bits (76), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 45/209 (21%), Positives = 82/209 (39%), Gaps = 24/209 (11%)
Query: 47 EEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKD 106
E T I D P L S + A N+V+A+I+T +D A + +
Sbjct: 733 EAVTEITVLAPDHPRLLSVITGACAAAGGNIVDAQIFTTSDGRALDTILISREFDTDDDE 792
Query: 107 PKRLSTIKELLFNVLRGYDDFRKAKTSLSPPGIMNRERRLHQIMFDDRDYERVEKAVGRV 166
+R + +++ +VL G K L P + R + + R K RV
Sbjct: 793 RRRAERVGKVIEDVLSG-------KAHL-PDMLAKRTK--------PKKAARAFKVEPRV 836
Query: 167 EDKSSRPQVTVLNIEKDYTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQ 226
E ++ + +TVI + DRP LL ++ ++D+ + + T +
Sbjct: 837 EINNT--------LSNKFTVIEVEGLDRPGLLSELTGLISDLSLDIASAHITTFGEKVID 888
Query: 227 EFYIRHVDGLPISSEAERERVIQCLEAAI 255
FY+ + G IS+ + + + L A +
Sbjct: 889 SFYVTDLVGHKISNATRQGNIKRKLLALL 917
>sp|A5VN81|GLND_BRUO2 [Protein-PII] uridylyltransferase OS=Brucella ovis (strain ATCC
25840 / 63/290 / NCTC 10512) GN=glnD PE=3 SV=1
Length = 934
Score = 48.1 bits (113), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 32/46 (69%)
Query: 271 DRVGLLSDITRIFRENSLSIKRAEISTIGGKVKDTFYVTDVTGNPV 316
DR GLLS++T + + SL I A I+T G KV D+FYVTD+ G+ +
Sbjct: 855 DRPGLLSELTGLISDLSLDIASAHITTFGEKVIDSFYVTDLVGHKI 900
Score = 47.0 bits (110), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 45/90 (50%), Gaps = 1/90 (1%)
Query: 32 SFAPSLRSSVGVMPTEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAA 91
+F R + + + T IE G DRPGL SE+ +++DL ++ +A I T ++
Sbjct: 829 AFKVEPRVEINNTLSNKFTVIEVEGLDRPGLLSELTGLISDLSLDIASAHITTFGEKVID 888
Query: 92 VVHVTDHSTGYAIKDPKRLSTIKELLFNVL 121
+VTD G+ I + R IK L +L
Sbjct: 889 SFYVTD-LVGHKISNATRQGNIKRKLLALL 917
Score = 32.0 bits (71), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 48/212 (22%), Positives = 86/212 (40%), Gaps = 30/212 (14%)
Query: 47 EEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHND-RAAAVVHVTDHSTGYAIK 105
E T I D P L S + A N+V+A+I+T +D RA + + S +
Sbjct: 733 EAVTEITVLAPDHPRLLSVITGACAAAGGNIVDAQIFTTSDGRALDTILI---SREFDTD 789
Query: 106 DPKRLST--IKELLFNVLRGYDDFRKAKTSLSPPGIMNRERRLHQIMFDDRDYERVEKAV 163
D +R + +++ +VL G K L P + R + + R K
Sbjct: 790 DDERRQAERVGKVIEDVLSG-------KAHL-PDMLAKRTK--------PKKAARAFKVE 833
Query: 164 GRVEDKSSRPQVTVLNIEKDYTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGRTE 223
RVE ++ + +TVI + DRP LL ++ ++D+ + + T +
Sbjct: 834 PRVEINNT--------LSNKFTVIEVEGLDRPGLLSELTGLISDLSLDIASAHITTFGEK 885
Query: 224 AYQEFYIRHVDGLPISSEAERERVIQCLEAAI 255
FY+ + G IS+ + + + L A +
Sbjct: 886 VIDSFYVTDLVGHKISNATRQGNIKRKLLALL 917
>sp|B0CIQ3|GLND_BRUSI [Protein-PII] uridylyltransferase OS=Brucella suis (strain ATCC
23445 / NCTC 10510) GN=glnD PE=3 SV=1
Length = 934
Score = 48.1 bits (113), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 32/46 (69%)
Query: 271 DRVGLLSDITRIFRENSLSIKRAEISTIGGKVKDTFYVTDVTGNPV 316
DR GLLS++T + + SL I A I+T G KV D+FYVTD+ G+ +
Sbjct: 855 DRPGLLSELTGLISDLSLDIASAHITTFGEKVIDSFYVTDLVGHKI 900
Score = 47.0 bits (110), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 45/90 (50%), Gaps = 1/90 (1%)
Query: 32 SFAPSLRSSVGVMPTEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAA 91
+F R + + + T IE G DRPGL SE+ +++DL ++ +A I T ++
Sbjct: 829 AFKVEPRVEINNTLSNKFTVIEVEGLDRPGLLSELTGLISDLSLDIASAHITTFGEKVID 888
Query: 92 VVHVTDHSTGYAIKDPKRLSTIKELLFNVL 121
+VTD G+ I + R IK L +L
Sbjct: 889 SFYVTD-LVGHKISNATRQGNIKRKLLALL 917
Score = 33.5 bits (75), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 45/209 (21%), Positives = 82/209 (39%), Gaps = 24/209 (11%)
Query: 47 EEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKD 106
E T I D P L S + A N+V+A+I+T +D A + +
Sbjct: 733 EAVTEITVLAPDHPRLLSVITGACAAAGGNIVDAQIFTTSDGRALDTILISREFDTDDDE 792
Query: 107 PKRLSTIKELLFNVLRGYDDFRKAKTSLSPPGIMNRERRLHQIMFDDRDYERVEKAVGRV 166
+R + +++ +VL G K L P + R + + R K RV
Sbjct: 793 RRRAERVGKVIEDVLSG-------KAHL-PDMLAKRTK--------PKKAARAFKVEPRV 836
Query: 167 EDKSSRPQVTVLNIEKDYTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQ 226
E ++ + +TVI + DRP LL ++ ++D+ + + T +
Sbjct: 837 EINNT--------LSNKFTVIEVEGLDRPGLLSELTGLISDLSLDIASAHITTFGEKVID 888
Query: 227 EFYIRHVDGLPISSEAERERVIQCLEAAI 255
FY+ + G IS+ + + + L A +
Sbjct: 889 SFYVTDLVGHKISNATRQGNIKRKLLALL 917
>sp|Q8YES3|GLND_BRUME [Protein-PII] uridylyltransferase OS=Brucella melitensis biotype 1
(strain 16M / ATCC 23456 / NCTC 10094) GN=glnD PE=3 SV=1
Length = 934
Score = 48.1 bits (113), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 32/46 (69%)
Query: 271 DRVGLLSDITRIFRENSLSIKRAEISTIGGKVKDTFYVTDVTGNPV 316
DR GLLS++T + + SL I A I+T G KV D+FYVTD+ G+ +
Sbjct: 855 DRPGLLSELTGLISDLSLDIASAHITTFGEKVIDSFYVTDLVGHKI 900
Score = 47.0 bits (110), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 45/90 (50%), Gaps = 1/90 (1%)
Query: 32 SFAPSLRSSVGVMPTEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAA 91
+F R + + + T IE G DRPGL SE+ +++DL ++ +A I T ++
Sbjct: 829 AFKVEPRVEINNTLSNKFTVIEVEGLDRPGLLSELTGLISDLSLDIASAHITTFGEKVID 888
Query: 92 VVHVTDHSTGYAIKDPKRLSTIKELLFNVL 121
+VTD G+ I + R IK L +L
Sbjct: 889 SFYVTD-LVGHKISNATRQGNIKRKLLALL 917
Score = 33.9 bits (76), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 45/209 (21%), Positives = 82/209 (39%), Gaps = 24/209 (11%)
Query: 47 EEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKD 106
E T I D P L S + A N+V+A+I+T +D A + +
Sbjct: 733 EAVTEITVLAPDHPRLLSVITGACAAAGGNIVDAQIFTTSDGRALDTILISREFDTDDDE 792
Query: 107 PKRLSTIKELLFNVLRGYDDFRKAKTSLSPPGIMNRERRLHQIMFDDRDYERVEKAVGRV 166
+R + +++ +VL G K L P + R + + R K RV
Sbjct: 793 RRRAERVGKVIEDVLSG-------KAHL-PDMLAKRTK--------PKKAARAFKVEPRV 836
Query: 167 EDKSSRPQVTVLNIEKDYTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQ 226
E ++ + +TVI + DRP LL ++ ++D+ + + T +
Sbjct: 837 EINNT--------LSNKFTVIEVEGLDRPGLLSELTGLISDLSLDIASAHITTFGEKVID 888
Query: 227 EFYIRHVDGLPISSEAERERVIQCLEAAI 255
FY+ + G IS+ + + + L A +
Sbjct: 889 SFYVTDLVGHKISNATRQGNIKRKLLALL 917
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.136 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 135,861,745
Number of Sequences: 539616
Number of extensions: 5603689
Number of successful extensions: 15818
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 195
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 15163
Number of HSP's gapped (non-prelim): 635
length of query: 374
length of database: 191,569,459
effective HSP length: 119
effective length of query: 255
effective length of database: 127,355,155
effective search space: 32475564525
effective search space used: 32475564525
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (28.5 bits)