Query 017268
Match_columns 374
No_of_seqs 287 out of 2030
Neff 7.3
Searched_HMMs 46136
Date Fri Mar 29 07:05:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017268.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017268hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK01759 glnD PII uridylyl-tra 100.0 3.5E-28 7.6E-33 263.3 23.7 162 170-332 662-853 (854)
2 PRK01759 glnD PII uridylyl-tra 100.0 1.3E-27 2.7E-32 259.0 26.3 187 37-255 665-853 (854)
3 PRK05007 PII uridylyl-transfer 100.0 1.1E-27 2.3E-32 260.4 24.0 163 171-334 687-880 (884)
4 PRK05007 PII uridylyl-transfer 100.0 2.9E-27 6.2E-32 257.1 26.5 189 37-256 689-879 (884)
5 PRK00275 glnD PII uridylyl-tra 100.0 1E-26 2.2E-31 252.9 28.8 190 40-257 692-887 (895)
6 PRK04374 PII uridylyl-transfer 99.9 6.9E-26 1.5E-30 245.1 28.2 181 44-256 685-867 (869)
7 PRK03059 PII uridylyl-transfer 99.9 1.3E-25 2.8E-30 243.3 28.1 185 39-255 668-854 (856)
8 TIGR01693 UTase_glnD [Protein- 99.9 3.3E-25 7.2E-30 241.1 27.9 191 37-255 656-849 (850)
9 TIGR01693 UTase_glnD [Protein- 99.9 2.1E-25 4.6E-30 242.7 24.0 163 171-333 654-850 (850)
10 PRK05092 PII uridylyl-transfer 99.9 1.6E-24 3.5E-29 237.4 29.6 192 40-257 723-916 (931)
11 PRK03381 PII uridylyl-transfer 99.9 1.5E-24 3.2E-29 233.1 24.5 181 40-251 591-772 (774)
12 PRK00275 glnD PII uridylyl-tra 99.9 2.5E-24 5.4E-29 234.3 24.4 164 172-335 688-888 (895)
13 PRK04374 PII uridylyl-transfer 99.9 8.7E-24 1.9E-28 228.8 24.3 158 173-333 677-867 (869)
14 PRK05092 PII uridylyl-transfer 99.9 2E-23 4.3E-28 228.8 25.5 172 171-342 718-924 (931)
15 COG2844 GlnD UTP:GlnB (protein 99.9 1.6E-23 3.6E-28 217.2 20.9 185 40-255 675-861 (867)
16 PRK03381 PII uridylyl-transfer 99.9 2.5E-23 5.4E-28 223.6 22.8 153 171-329 586-773 (774)
17 COG2844 GlnD UTP:GlnB (protein 99.9 2.2E-23 4.7E-28 216.3 19.9 162 172-334 671-863 (867)
18 PRK03059 PII uridylyl-transfer 99.9 1E-22 2.2E-27 220.8 23.4 157 172-332 665-854 (856)
19 cd04897 ACT_ACR_3 ACT domain-c 99.8 3E-20 6.4E-25 142.2 10.5 71 263-333 2-73 (75)
20 cd04895 ACT_ACR_1 ACT domain-c 99.8 6.9E-20 1.5E-24 139.2 10.4 69 262-330 1-70 (72)
21 cd04896 ACT_ACR-like_3 ACT dom 99.8 3.6E-19 7.9E-24 136.3 10.0 71 263-334 1-74 (75)
22 cd04897 ACT_ACR_3 ACT domain-c 99.8 1.1E-17 2.4E-22 128.1 11.1 75 184-258 1-75 (75)
23 cd04895 ACT_ACR_1 ACT domain-c 99.7 1.6E-16 3.5E-21 120.8 10.6 69 184-252 1-69 (72)
24 PRK11589 gcvR glycine cleavage 99.7 3.3E-16 7.3E-21 141.2 13.9 140 182-329 6-163 (190)
25 cd04925 ACT_ACR_2 ACT domain-c 99.7 1.2E-15 2.7E-20 117.1 11.1 73 50-123 1-74 (74)
26 cd04896 ACT_ACR-like_3 ACT dom 99.6 2.8E-15 6.1E-20 114.8 10.4 71 185-256 1-73 (75)
27 cd04900 ACT_UUR-like_1 ACT dom 99.6 3.2E-15 7E-20 114.5 10.8 71 50-121 2-73 (73)
28 cd04925 ACT_ACR_2 ACT domain-c 99.6 7.8E-15 1.7E-19 112.7 10.8 72 185-256 1-73 (74)
29 cd04900 ACT_UUR-like_1 ACT dom 99.6 1E-14 2.2E-19 111.7 10.6 71 185-255 2-73 (73)
30 PRK11589 gcvR glycine cleavage 99.6 1.3E-13 2.8E-18 124.4 16.8 154 46-253 5-164 (190)
31 cd04927 ACT_ACR-like_2 Second 99.6 3E-14 6.4E-19 110.1 10.7 69 264-332 2-71 (76)
32 cd04927 ACT_ACR-like_2 Second 99.6 5.7E-14 1.2E-18 108.5 11.3 70 186-256 2-72 (76)
33 COG2716 GcvR Glycine cleavage 99.5 1.4E-13 3.1E-18 119.5 10.3 141 182-330 3-161 (176)
34 cd04928 ACT_TyrKc Uncharacteri 99.4 1.5E-12 3.3E-17 97.8 9.7 65 50-121 2-67 (68)
35 PRK00227 glnD PII uridylyl-tra 99.4 4.9E-12 1.1E-16 133.9 13.3 137 185-333 547-691 (693)
36 cd04926 ACT_ACR_4 C-terminal 99.4 6.1E-12 1.3E-16 96.0 10.3 68 49-118 1-68 (72)
37 cd04928 ACT_TyrKc Uncharacteri 99.3 1.2E-11 2.7E-16 92.9 9.8 65 185-255 2-67 (68)
38 COG2716 GcvR Glycine cleavage 99.3 1E-11 2.2E-16 108.0 10.4 158 46-253 2-161 (176)
39 cd04926 ACT_ACR_4 C-terminal 99.3 2.1E-11 4.6E-16 93.1 10.5 67 185-252 2-68 (72)
40 cd04899 ACT_ACR-UUR-like_2 C-t 99.3 3.8E-11 8.3E-16 90.4 10.5 70 263-332 1-70 (70)
41 cd04899 ACT_ACR-UUR-like_2 C-t 99.2 9.3E-11 2E-15 88.3 10.4 69 185-254 1-69 (70)
42 PRK00227 glnD PII uridylyl-tra 99.2 4.6E-10 1E-14 119.1 19.0 143 50-255 547-690 (693)
43 cd04873 ACT_UUR-ACR-like ACT d 99.0 9.1E-09 2E-13 76.9 10.4 68 186-254 2-69 (70)
44 cd04873 ACT_UUR-ACR-like ACT d 99.0 9.7E-09 2.1E-13 76.8 10.5 69 263-331 1-69 (70)
45 COG4747 ACT domain-containing 98.8 1.8E-07 4E-12 76.5 13.2 114 185-310 4-118 (142)
46 PF13740 ACT_6: ACT domain; PD 98.7 1.2E-07 2.6E-12 73.0 10.3 64 184-254 2-65 (76)
47 PF13740 ACT_6: ACT domain; PD 98.7 1.4E-07 2.9E-12 72.7 10.1 64 49-120 2-65 (76)
48 cd04870 ACT_PSP_1 CT domains f 98.5 5.8E-07 1.3E-11 68.9 7.9 62 186-253 1-62 (75)
49 cd04893 ACT_GcvR_1 ACT domains 98.5 1E-06 2.2E-11 68.0 8.9 65 50-123 2-66 (77)
50 cd04893 ACT_GcvR_1 ACT domains 98.5 1.1E-06 2.5E-11 67.7 9.0 62 185-253 2-63 (77)
51 cd04870 ACT_PSP_1 CT domains f 98.4 9.5E-07 2.1E-11 67.7 7.3 62 264-330 1-62 (75)
52 PF01842 ACT: ACT domain; Int 98.4 3.3E-06 7.2E-11 62.1 9.7 61 50-119 1-63 (66)
53 PF01842 ACT: ACT domain; Int 98.4 4.8E-06 1E-10 61.2 10.0 61 185-253 1-63 (66)
54 cd04894 ACT_ACR-like_1 ACT dom 98.3 3.5E-06 7.6E-11 61.2 6.7 67 50-120 1-67 (69)
55 cd04872 ACT_1ZPV ACT domain pr 98.2 6.9E-06 1.5E-10 64.9 7.3 50 185-234 2-51 (88)
56 cd04894 ACT_ACR-like_1 ACT dom 98.2 8.9E-06 1.9E-10 59.2 6.8 67 185-254 1-67 (69)
57 cd04872 ACT_1ZPV ACT domain pr 98.1 8.2E-06 1.8E-10 64.4 7.3 64 50-119 2-65 (88)
58 cd04869 ACT_GcvR_2 ACT domains 98.1 2.1E-05 4.6E-10 60.7 8.7 62 186-253 1-68 (81)
59 cd04875 ACT_F4HF-DF N-terminal 98.1 7.8E-06 1.7E-10 62.3 6.0 65 264-330 1-65 (74)
60 cd04875 ACT_F4HF-DF N-terminal 98.1 2.4E-05 5.2E-10 59.6 8.7 63 186-253 1-65 (74)
61 PRK00194 hypothetical protein; 98.1 1.7E-05 3.7E-10 62.7 7.8 50 184-233 3-52 (90)
62 cd04869 ACT_GcvR_2 ACT domains 98.1 2.8E-05 6.1E-10 60.0 8.8 62 51-119 1-68 (81)
63 PRK00194 hypothetical protein; 98.1 1.7E-05 3.6E-10 62.8 7.6 68 49-123 3-70 (90)
64 TIGR00655 PurU formyltetrahydr 97.8 0.00058 1.3E-08 65.6 14.8 107 186-297 2-119 (280)
65 PRK06027 purU formyltetrahydro 97.8 0.00079 1.7E-08 64.9 15.2 110 183-297 5-124 (286)
66 PF13291 ACT_4: ACT domain; PD 97.8 0.00025 5.3E-09 54.7 9.2 64 262-330 6-71 (80)
67 PRK13010 purU formyltetrahydro 97.7 0.00069 1.5E-08 65.4 14.1 111 183-297 8-128 (289)
68 COG4747 ACT domain-containing 97.7 0.0033 7.1E-08 51.9 14.9 113 51-232 5-118 (142)
69 COG3830 ACT domain-containing 97.7 6.2E-05 1.3E-09 59.2 4.7 50 184-233 3-52 (90)
70 PRK13011 formyltetrahydrofolat 97.6 0.002 4.3E-08 62.1 15.0 108 184-297 7-124 (286)
71 COG3830 ACT domain-containing 97.6 0.00011 2.4E-09 57.8 4.7 67 49-121 3-69 (90)
72 TIGR00655 PurU formyltetrahydr 97.6 0.00032 7E-09 67.4 8.8 69 51-125 2-72 (280)
73 PF13291 ACT_4: ACT domain; PD 97.5 0.00071 1.5E-08 52.1 9.0 63 49-118 6-70 (80)
74 PRK13010 purU formyltetrahydro 97.5 0.00032 6.9E-09 67.7 8.5 67 48-119 8-76 (289)
75 PRK06027 purU formyltetrahydro 97.5 0.00044 9.5E-09 66.7 8.9 71 48-125 5-77 (286)
76 cd04887 ACT_MalLac-Enz ACT_Mal 97.5 0.0012 2.6E-08 49.8 9.5 61 265-330 2-63 (74)
77 cd04877 ACT_TyrR N-terminal AC 97.3 0.0011 2.3E-08 50.5 7.5 59 264-330 2-60 (74)
78 cd04887 ACT_MalLac-Enz ACT_Mal 97.3 0.0027 5.8E-08 47.8 9.6 61 52-119 2-63 (74)
79 PRK07431 aspartate kinase; Pro 97.3 0.17 3.6E-06 53.7 26.0 197 45-294 344-554 (587)
80 cd04908 ACT_Bt0572_1 N-termina 97.3 0.0016 3.5E-08 48.3 7.7 43 264-308 3-45 (66)
81 cd04889 ACT_PDH-BS-like C-term 97.2 0.0011 2.4E-08 47.3 6.2 46 265-310 1-47 (56)
82 PRK13011 formyltetrahydrofolat 97.2 0.0019 4.1E-08 62.3 9.5 69 49-125 7-77 (286)
83 cd04886 ACT_ThrD-II-like C-ter 97.2 0.0034 7.3E-08 46.3 8.8 34 265-298 1-34 (73)
84 cd04909 ACT_PDH-BS C-terminal 97.2 0.0032 7E-08 46.8 8.3 47 263-309 2-50 (69)
85 PRK13562 acetolactate synthase 97.1 0.0033 7.3E-08 49.1 8.5 64 186-255 4-69 (84)
86 cd04878 ACT_AHAS N-terminal AC 97.1 0.0058 1.2E-07 44.9 9.0 62 264-330 2-64 (72)
87 cd04905 ACT_CM-PDT C-terminal 97.1 0.0054 1.2E-07 47.3 8.9 51 263-314 2-53 (80)
88 cd04908 ACT_Bt0572_1 N-termina 97.0 0.005 1.1E-07 45.6 8.4 39 50-88 2-40 (66)
89 CHL00100 ilvH acetohydroxyacid 97.0 0.004 8.7E-08 55.6 9.1 64 263-330 3-66 (174)
90 cd04886 ACT_ThrD-II-like C-ter 97.0 0.0068 1.5E-07 44.7 9.1 61 52-119 1-66 (73)
91 cd04889 ACT_PDH-BS-like C-term 97.0 0.0026 5.7E-08 45.4 6.4 45 52-96 1-46 (56)
92 PRK06737 acetolactate synthase 97.0 0.0059 1.3E-07 47.0 8.6 63 263-330 3-66 (76)
93 PRK08178 acetolactate synthase 97.0 0.015 3.2E-07 46.7 10.8 85 184-282 8-94 (96)
94 cd04888 ACT_PheB-BS C-terminal 96.9 0.0083 1.8E-07 45.2 9.0 63 264-330 2-65 (76)
95 cd04877 ACT_TyrR N-terminal AC 96.9 0.0046 1E-07 46.9 7.5 37 186-223 2-38 (74)
96 cd04879 ACT_3PGDH-like ACT_3PG 96.9 0.0065 1.4E-07 44.4 8.2 44 265-308 2-47 (71)
97 COG0788 PurU Formyltetrahydrof 96.9 0.0046 1E-07 58.1 8.7 66 183-253 6-73 (287)
98 COG0788 PurU Formyltetrahydrof 96.9 0.0043 9.4E-08 58.3 8.3 69 48-123 6-76 (287)
99 cd04881 ACT_HSDH-Hom ACT_HSDH_ 96.9 0.0091 2E-07 44.7 8.7 64 263-330 1-65 (79)
100 PRK13562 acetolactate synthase 96.8 0.0069 1.5E-07 47.4 7.5 65 263-330 3-67 (84)
101 PRK08178 acetolactate synthase 96.8 0.009 2E-07 47.9 8.2 65 47-119 6-71 (96)
102 cd04882 ACT_Bt0572_2 C-termina 96.7 0.0073 1.6E-07 43.9 7.0 36 264-299 1-36 (65)
103 TIGR00119 acolac_sm acetolacta 96.7 0.011 2.3E-07 52.0 9.1 68 263-337 2-71 (157)
104 cd04909 ACT_PDH-BS C-terminal 96.7 0.014 3.1E-07 43.2 8.4 47 185-231 2-50 (69)
105 PRK06737 acetolactate synthase 96.7 0.011 2.5E-07 45.4 7.9 62 50-119 3-66 (76)
106 cd04903 ACT_LSD C-terminal ACT 96.7 0.012 2.6E-07 43.1 7.8 33 265-297 2-34 (71)
107 cd04879 ACT_3PGDH-like ACT_3PG 96.6 0.012 2.7E-07 42.9 7.8 45 187-231 2-48 (71)
108 cd04881 ACT_HSDH-Hom ACT_HSDH_ 96.6 0.016 3.5E-07 43.3 8.6 46 51-96 2-48 (79)
109 CHL00100 ilvH acetohydroxyacid 96.6 0.0099 2.1E-07 53.1 8.4 64 185-255 3-68 (174)
110 cd04902 ACT_3PGDH-xct C-termin 96.6 0.0091 2E-07 44.5 7.0 44 265-308 2-47 (73)
111 PRK11895 ilvH acetolactate syn 96.6 0.023 5E-07 50.1 10.1 71 263-340 3-75 (161)
112 cd04888 ACT_PheB-BS C-terminal 96.6 0.018 4E-07 43.3 8.4 62 186-252 2-64 (76)
113 TIGR00119 acolac_sm acetolacta 96.5 0.024 5.2E-07 49.8 9.5 62 50-119 2-65 (157)
114 cd04874 ACT_Af1403 N-terminal 96.4 0.028 6.1E-07 41.3 8.7 35 264-298 2-36 (72)
115 cd04903 ACT_LSD C-terminal ACT 96.4 0.023 5E-07 41.5 8.1 46 187-232 2-49 (71)
116 PRK11895 ilvH acetolactate syn 96.4 0.027 5.8E-07 49.7 9.6 62 50-119 3-66 (161)
117 cd04874 ACT_Af1403 N-terminal 96.4 0.026 5.7E-07 41.4 8.3 47 186-232 2-49 (72)
118 cd04878 ACT_AHAS N-terminal AC 96.4 0.033 7.1E-07 40.7 8.7 45 51-95 2-48 (72)
119 PRK11152 ilvM acetolactate syn 96.3 0.027 5.9E-07 43.3 8.1 61 263-330 4-66 (76)
120 cd04901 ACT_3PGDH C-terminal A 96.3 0.0047 1E-07 45.7 3.7 46 187-232 2-47 (69)
121 cd04882 ACT_Bt0572_2 C-termina 96.3 0.019 4.1E-07 41.7 6.9 44 187-230 2-47 (65)
122 cd04901 ACT_3PGDH C-terminal A 96.3 0.0052 1.1E-07 45.4 3.8 44 265-308 2-45 (69)
123 cd04876 ACT_RelA-SpoT ACT dom 96.3 0.042 9.1E-07 39.0 8.7 61 265-330 1-62 (71)
124 cd04902 ACT_3PGDH-xct C-termin 96.2 0.021 4.5E-07 42.5 7.0 46 187-232 2-49 (73)
125 PRK11152 ilvM acetolactate syn 96.2 0.042 9.2E-07 42.2 8.3 62 185-254 4-67 (76)
126 PRK08577 hypothetical protein; 96.1 0.11 2.4E-06 44.4 11.7 75 173-252 42-121 (136)
127 cd04884 ACT_CBS C-terminal ACT 96.1 0.036 7.7E-07 41.6 7.7 34 265-298 2-35 (72)
128 cd02116 ACT ACT domains are co 96.1 0.04 8.7E-07 37.1 7.4 35 265-299 1-35 (60)
129 PRK07431 aspartate kinase; Pro 96.1 0.9 1.9E-05 48.2 20.7 168 56-295 278-473 (587)
130 cd04904 ACT_AAAH ACT domain of 96.0 0.044 9.5E-07 41.7 7.6 49 264-313 2-51 (74)
131 PRK08577 hypothetical protein; 96.0 0.076 1.7E-06 45.3 9.9 43 44-86 51-93 (136)
132 cd04880 ACT_AAAH-PDT-like ACT 95.9 0.067 1.5E-06 40.4 8.5 64 265-330 2-66 (75)
133 cd04884 ACT_CBS C-terminal ACT 95.9 0.061 1.3E-06 40.3 8.1 34 187-220 2-35 (72)
134 PRK06635 aspartate kinase; Rev 95.8 0.34 7.3E-06 48.9 15.5 102 184-294 262-375 (404)
135 cd04931 ACT_PAH ACT domain of 95.7 0.068 1.5E-06 42.5 8.1 51 263-314 15-66 (90)
136 cd04876 ACT_RelA-SpoT ACT dom 95.7 0.1 2.2E-06 37.0 8.5 45 52-96 1-46 (71)
137 PF13710 ACT_5: ACT domain; PD 95.7 0.059 1.3E-06 39.8 7.1 54 271-330 1-56 (63)
138 PRK04435 hypothetical protein; 95.7 0.11 2.4E-06 45.1 9.9 70 44-119 64-134 (147)
139 PRK04435 hypothetical protein; 95.6 0.11 2.4E-06 45.0 9.7 68 180-252 65-133 (147)
140 cd04883 ACT_AcuB C-terminal AC 95.6 0.061 1.3E-06 40.0 7.0 46 263-308 2-49 (72)
141 cd02116 ACT ACT domains are co 95.4 0.067 1.4E-06 36.0 6.3 35 52-86 1-35 (60)
142 cd04905 ACT_CM-PDT C-terminal 95.4 0.19 4.2E-06 38.5 9.3 48 186-233 3-51 (80)
143 TIGR00656 asp_kin_monofn aspar 95.3 0.7 1.5E-05 46.5 15.9 99 183-292 259-370 (401)
144 PRK07334 threonine dehydratase 95.3 0.11 2.4E-06 52.5 9.8 64 262-330 326-394 (403)
145 cd04883 ACT_AcuB C-terminal AC 95.1 0.11 2.4E-06 38.5 7.1 46 50-95 2-49 (72)
146 cd04929 ACT_TPH ACT domain of 95.0 0.15 3.3E-06 38.9 7.5 50 265-315 3-53 (74)
147 cd04898 ACT_ACR-like_4 ACT dom 94.7 0.047 1E-06 41.5 4.0 66 264-330 2-72 (77)
148 PRK11899 prephenate dehydratas 94.7 0.14 3.1E-06 49.2 8.4 55 262-317 194-249 (279)
149 PRK07334 threonine dehydratase 94.4 0.26 5.5E-06 49.9 9.9 65 48-119 325-394 (403)
150 cd04871 ACT_PSP_2 ACT domains 94.4 0.028 6E-07 44.0 2.2 61 264-330 1-71 (84)
151 PF13710 ACT_5: ACT domain; PD 94.3 0.25 5.3E-06 36.5 7.0 54 193-253 1-56 (63)
152 COG0077 PheA Prephenate dehydr 94.1 0.21 4.5E-06 47.9 7.8 55 262-317 194-249 (279)
153 TIGR00719 sda_beta L-serine de 94.0 0.29 6.3E-06 45.0 8.4 60 260-323 146-207 (208)
154 PRK08210 aspartate kinase I; R 94.0 1.8 3.9E-05 43.7 15.0 96 183-292 270-372 (403)
155 PRK06635 aspartate kinase; Rev 93.8 4 8.6E-05 41.1 17.1 106 51-215 264-374 (404)
156 cd04930 ACT_TH ACT domain of t 93.8 0.16 3.4E-06 42.3 5.7 53 262-315 41-94 (115)
157 PRK06291 aspartate kinase; Pro 93.5 2.4 5.3E-05 43.7 15.2 103 182-295 319-434 (465)
158 PRK10872 relA (p)ppGpp synthet 93.3 0.45 9.7E-06 51.7 9.7 64 262-330 666-731 (743)
159 cd04885 ACT_ThrD-I Tandem C-te 93.2 0.59 1.3E-05 34.6 7.5 31 188-219 2-32 (68)
160 cd04885 ACT_ThrD-I Tandem C-te 93.1 0.59 1.3E-05 34.6 7.4 61 52-119 1-61 (68)
161 PRK10872 relA (p)ppGpp synthet 92.8 0.64 1.4E-05 50.5 9.8 63 184-252 666-730 (743)
162 cd04880 ACT_AAAH-PDT-like ACT 92.5 1.3 2.8E-05 33.2 8.8 46 187-232 2-48 (75)
163 cd04871 ACT_PSP_2 ACT domains 92.4 0.097 2.1E-06 40.9 2.4 66 51-125 1-76 (84)
164 TIGR00656 asp_kin_monofn aspar 92.2 14 0.0003 37.1 18.9 107 47-214 258-370 (401)
165 PRK11092 bifunctional (p)ppGpp 92.1 0.8 1.7E-05 49.6 9.7 64 262-330 626-690 (702)
166 cd04906 ACT_ThrD-I_1 First of 92.1 1.1 2.5E-05 34.7 8.2 62 264-330 3-64 (85)
167 PRK11790 D-3-phosphoglycerate 91.9 0.35 7.5E-06 49.1 6.3 61 262-326 338-398 (409)
168 PRK10622 pheA bifunctional cho 91.8 0.73 1.6E-05 46.4 8.4 55 262-317 297-352 (386)
169 PRK11092 bifunctional (p)ppGpp 91.8 0.79 1.7E-05 49.7 9.1 64 49-119 626-690 (702)
170 PRK11790 D-3-phosphoglycerate 91.8 0.78 1.7E-05 46.6 8.6 50 46-95 335-384 (409)
171 PRK09034 aspartate kinase; Rev 91.7 3.4 7.4E-05 42.5 13.3 118 183-310 307-434 (454)
172 cd04931 ACT_PAH ACT domain of 91.6 1.9 4.2E-05 34.2 9.0 69 183-255 13-82 (90)
173 COG1707 ACT domain-containing 91.6 0.63 1.4E-05 41.0 6.6 47 186-232 4-52 (218)
174 PF13840 ACT_7: ACT domain ; P 91.5 0.94 2E-05 33.4 6.7 47 46-97 3-53 (65)
175 TIGR00691 spoT_relA (p)ppGpp s 91.4 1.1 2.3E-05 48.6 9.7 64 262-330 610-674 (683)
176 KOG2663 Acetolactate synthase, 91.3 0.52 1.1E-05 44.2 6.1 37 261-297 76-112 (309)
177 TIGR00719 sda_beta L-serine de 91.0 0.82 1.8E-05 42.0 7.3 49 184-232 148-198 (208)
178 COG1707 ACT domain-containing 90.9 1 2.2E-05 39.7 7.2 44 265-308 5-50 (218)
179 PRK08818 prephenate dehydrogen 90.8 0.53 1.1E-05 47.1 6.2 49 262-311 295-344 (370)
180 PRK09436 thrA bifunctional asp 90.8 11 0.00025 41.7 17.1 106 182-294 313-431 (819)
181 PRK06291 aspartate kinase; Pro 90.8 22 0.00048 36.7 19.0 113 46-219 318-436 (465)
182 TIGR00691 spoT_relA (p)ppGpp s 90.7 1.6 3.4E-05 47.3 10.1 63 184-252 610-673 (683)
183 PRK06382 threonine dehydratase 90.6 1.3 2.8E-05 44.9 8.9 64 262-330 330-398 (406)
184 TIGR00657 asp_kinases aspartat 90.3 8 0.00017 39.5 14.5 101 183-294 301-413 (441)
185 PRK06545 prephenate dehydrogen 90.0 1.2 2.6E-05 44.3 8.0 47 262-308 290-336 (359)
186 PRK12483 threonine dehydratase 89.9 13 0.00029 38.9 15.9 135 181-329 342-501 (521)
187 cd04898 ACT_ACR-like_4 ACT dom 89.9 0.85 1.8E-05 34.8 5.1 69 52-122 3-75 (77)
188 KOG2663 Acetolactate synthase, 89.7 0.65 1.4E-05 43.5 5.3 64 184-254 77-142 (309)
189 PRK09181 aspartate kinase; Val 89.7 7.1 0.00015 40.5 13.6 130 183-329 328-465 (475)
190 PF13840 ACT_7: ACT domain ; P 89.3 1.7 3.8E-05 32.0 6.5 34 183-216 5-42 (65)
191 COG0317 SpoT Guanosine polypho 88.8 2.3 5E-05 45.8 9.4 65 182-252 625-690 (701)
192 PLN02317 arogenate dehydratase 88.8 1.8 3.9E-05 43.5 8.1 53 263-316 284-351 (382)
193 PRK09034 aspartate kinase; Rev 88.8 31 0.00067 35.5 18.0 111 48-219 307-423 (454)
194 COG0317 SpoT Guanosine polypho 88.7 1.9 4.1E-05 46.5 8.6 50 47-96 625-675 (701)
195 PLN02551 aspartokinase 88.6 15 0.00031 38.7 15.0 132 182-329 364-508 (521)
196 PRK06382 threonine dehydratase 88.5 3.1 6.8E-05 42.0 9.9 52 181-232 327-383 (406)
197 PRK14646 hypothetical protein; 88.4 6.3 0.00014 34.5 10.4 94 196-290 8-103 (155)
198 PRK06349 homoserine dehydrogen 88.4 2 4.3E-05 43.8 8.4 65 262-330 348-412 (426)
199 cd04904 ACT_AAAH ACT domain of 88.3 2.8 6.1E-05 31.6 7.2 46 187-232 3-49 (74)
200 cd04906 ACT_ThrD-I_1 First of 87.9 4.4 9.6E-05 31.4 8.3 61 51-119 3-64 (85)
201 cd04932 ACT_AKiii-LysC-EC_1 AC 87.9 4.9 0.00011 30.5 8.3 61 264-330 3-67 (75)
202 PRK08210 aspartate kinase I; R 87.6 33 0.00073 34.5 17.0 34 47-80 269-303 (403)
203 PRK14636 hypothetical protein; 87.4 6.4 0.00014 35.3 10.0 91 194-287 4-98 (176)
204 cd04935 ACT_AKiii-DAPDC_1 ACT 87.3 3.7 8E-05 31.2 7.3 57 269-330 11-67 (75)
205 PRK14634 hypothetical protein; 87.1 8.1 0.00018 33.8 10.3 90 195-287 7-100 (155)
206 PRK09224 threonine dehydratase 86.5 32 0.00069 35.9 16.2 108 182-296 326-456 (504)
207 cd04929 ACT_TPH ACT domain of 86.4 4.6 9.9E-05 30.7 7.4 46 187-232 3-49 (74)
208 PRK13581 D-3-phosphoglycerate 86.4 1.8 4E-05 45.3 7.0 61 262-326 452-514 (526)
209 PRK11899 prephenate dehydratas 86.3 3.6 7.9E-05 39.6 8.4 49 184-232 194-243 (279)
210 TIGR01127 ilvA_1Cterm threonin 86.1 4.7 0.0001 40.3 9.5 64 262-330 305-373 (380)
211 PRK14645 hypothetical protein; 85.9 10 0.00023 33.1 10.3 91 194-287 8-102 (154)
212 PLN02550 threonine dehydratase 85.5 29 0.00064 37.0 15.3 134 183-330 416-572 (591)
213 PRK06545 prephenate dehydrogen 84.9 1.7 3.7E-05 43.2 5.6 41 182-222 288-328 (359)
214 COG0440 IlvH Acetolactate synt 84.7 3.3 7.2E-05 36.5 6.6 66 185-256 5-71 (163)
215 TIGR01327 PGDH D-3-phosphoglyc 84.7 2 4.4E-05 45.0 6.2 61 262-326 451-513 (525)
216 COG2150 Predicted regulator of 84.6 3.6 7.7E-05 36.1 6.6 61 263-325 94-156 (167)
217 PRK14630 hypothetical protein; 84.5 11 0.00023 32.6 9.6 90 193-287 6-97 (143)
218 PRK08198 threonine dehydratase 84.1 8.3 0.00018 38.9 10.3 40 45-84 323-362 (404)
219 cd04890 ACT_AK-like_1 ACT doma 84.0 7.9 0.00017 27.6 7.5 52 269-328 10-61 (62)
220 PRK09436 thrA bifunctional asp 84.0 73 0.0016 35.5 18.2 118 45-219 311-434 (819)
221 COG0077 PheA Prephenate dehydr 83.8 4.9 0.00011 38.6 7.9 50 183-232 193-243 (279)
222 PRK08198 threonine dehydratase 83.8 9.6 0.00021 38.4 10.6 37 182-218 325-361 (404)
223 COG0440 IlvH Acetolactate synt 83.7 4.4 9.5E-05 35.7 6.9 66 49-121 4-70 (163)
224 COG0527 LysC Aspartokinases [A 83.2 17 0.00038 37.3 12.1 118 182-310 305-430 (447)
225 cd04937 ACT_AKi-DapG-BS_2 ACT 83.1 14 0.0003 26.7 8.5 42 51-96 3-47 (64)
226 PRK09084 aspartate kinase III; 82.4 17 0.00037 37.3 11.8 99 182-288 304-413 (448)
227 TIGR01127 ilvA_1Cterm threonin 82.2 12 0.00026 37.4 10.4 36 183-218 304-339 (380)
228 PRK06349 homoserine dehydrogen 82.1 6.6 0.00014 40.0 8.6 54 44-97 343-396 (426)
229 TIGR01270 Trp_5_monoox tryptop 82.0 2.6 5.7E-05 43.1 5.6 53 262-315 31-85 (464)
230 cd04930 ACT_TH ACT domain of t 81.9 3.9 8.4E-05 34.0 5.7 49 184-232 41-90 (115)
231 PRK11898 prephenate dehydratas 81.3 6.1 0.00013 38.0 7.7 52 263-315 197-250 (283)
232 PRK08818 prephenate dehydrogen 80.6 4.3 9.3E-05 40.7 6.5 50 183-233 294-344 (370)
233 PRK13581 D-3-phosphoglycerate 80.0 4 8.8E-05 42.8 6.4 50 183-232 451-502 (526)
234 cd04922 ACT_AKi-HSDH-ThrA_2 AC 79.9 18 0.00039 25.7 8.2 45 264-310 3-50 (66)
235 PRK14631 hypothetical protein; 79.9 26 0.00056 31.3 10.6 94 196-290 9-120 (174)
236 PRK14640 hypothetical protein; 78.9 27 0.00058 30.4 10.2 89 197-290 8-100 (152)
237 COG2150 Predicted regulator of 78.5 4.1 8.9E-05 35.7 4.8 36 184-219 95-130 (167)
238 TIGR01268 Phe4hydrox_tetr phen 77.9 8.5 0.00018 39.3 7.6 52 263-315 17-69 (436)
239 cd04912 ACT_AKiii-LysC-EC-like 77.7 26 0.00056 26.2 8.7 63 50-119 2-67 (75)
240 PRK08961 bifunctional aspartat 77.2 32 0.00069 38.4 12.6 132 182-329 320-460 (861)
241 TIGR01327 PGDH D-3-phosphoglyc 77.1 4.3 9.4E-05 42.5 5.6 60 184-248 451-512 (525)
242 cd04919 ACT_AK-Hom3_2 ACT doma 77.1 23 0.0005 25.3 8.1 45 264-310 3-50 (66)
243 cd04913 ACT_AKii-LysC-BS-like_ 77.1 7.1 0.00015 28.3 5.4 27 269-295 9-35 (75)
244 PLN02551 aspartokinase 77.1 1E+02 0.0022 32.4 18.1 115 46-219 363-482 (521)
245 PRK14647 hypothetical protein; 76.7 28 0.0006 30.6 9.7 87 197-288 10-100 (159)
246 PRK14637 hypothetical protein; 76.6 33 0.00071 29.9 10.1 89 194-287 7-98 (151)
247 cd04933 ACT_AK1-AT_1 ACT domai 76.5 14 0.0003 28.4 6.9 58 269-330 11-70 (78)
248 PRK14639 hypothetical protein; 76.3 29 0.00062 29.8 9.5 85 201-290 3-91 (140)
249 cd04922 ACT_AKi-HSDH-ThrA_2 AC 75.6 26 0.00056 24.8 8.8 44 51-96 3-49 (66)
250 cd04868 ACT_AK-like ACT domain 75.5 6.5 0.00014 26.8 4.6 33 264-296 2-37 (60)
251 cd04937 ACT_AKi-DapG-BS_2 ACT 75.2 7.6 0.00016 28.1 5.0 28 264-291 3-33 (64)
252 PRK14643 hypothetical protein; 75.1 39 0.00086 29.8 10.3 92 197-290 11-107 (164)
253 cd04913 ACT_AKii-LysC-BS-like_ 75.0 19 0.00041 25.9 7.2 41 56-96 9-50 (75)
254 PRK10820 DNA-binding transcrip 74.8 3.6 7.7E-05 43.1 4.2 36 264-299 2-37 (520)
255 PRK00092 ribosome maturation p 74.6 33 0.00072 29.8 9.7 75 197-274 9-87 (154)
256 PRK10622 pheA bifunctional cho 74.3 12 0.00026 37.7 7.7 50 184-233 297-347 (386)
257 cd04891 ACT_AK-LysC-DapG-like_ 73.8 12 0.00026 25.7 5.6 42 269-310 8-50 (61)
258 cd04891 ACT_AK-LysC-DapG-like_ 73.7 11 0.00025 25.8 5.5 42 56-97 8-50 (61)
259 cd04912 ACT_AKiii-LysC-EC-like 72.5 22 0.00047 26.7 7.1 62 263-330 2-67 (75)
260 cd04934 ACT_AK-Hom3_1 CT domai 72.4 20 0.00042 27.1 6.7 54 270-330 12-65 (73)
261 COG4492 PheB ACT domain-contai 72.0 19 0.00041 30.7 7.0 52 181-232 69-121 (150)
262 PRK08526 threonine dehydratase 71.8 47 0.001 33.6 11.4 65 261-330 325-394 (403)
263 PRK09181 aspartate kinase; Val 71.8 1.3E+02 0.0028 31.2 17.3 105 48-217 328-437 (475)
264 cd04919 ACT_AK-Hom3_2 ACT doma 71.6 34 0.00073 24.4 8.8 44 51-96 3-49 (66)
265 cd04932 ACT_AKiii-LysC-EC_1 AC 71.5 41 0.0009 25.4 8.5 38 191-232 11-48 (75)
266 PRK14638 hypothetical protein; 71.4 44 0.00095 29.0 9.6 87 197-287 10-100 (150)
267 COG3978 Acetolactate synthase 70.6 30 0.00064 26.9 7.1 49 184-232 3-53 (86)
268 TIGR01124 ilvA_2Cterm threonin 70.5 63 0.0014 33.8 12.2 110 182-299 323-455 (499)
269 PRK14633 hypothetical protein; 69.7 53 0.0012 28.5 9.7 87 197-289 6-96 (150)
270 COG3283 TyrR Transcriptional r 68.6 11 0.00025 37.6 5.8 34 264-297 2-35 (511)
271 PRK14632 hypothetical protein; 67.5 52 0.0011 29.3 9.4 85 197-287 10-98 (172)
272 PRK09466 metL bifunctional asp 65.5 1.1E+02 0.0023 34.1 13.3 100 183-293 316-425 (810)
273 PF05088 Bac_GDH: Bacterial NA 63.9 52 0.0011 39.1 10.7 81 45-126 485-570 (1528)
274 cd04921 ACT_AKi-HSDH-ThrA-like 62.9 56 0.0012 24.2 7.7 35 264-298 3-40 (80)
275 cd04924 ACT_AK-Arch_2 ACT doma 62.7 51 0.0011 23.2 8.3 45 264-310 3-50 (66)
276 cd04924 ACT_AK-Arch_2 ACT doma 62.3 52 0.0011 23.1 8.8 45 51-97 3-50 (66)
277 TIGR00657 asp_kinases aspartat 62.1 1.9E+02 0.0041 29.5 19.5 34 183-216 377-413 (441)
278 cd04916 ACT_AKiii-YclM-BS_2 AC 61.8 54 0.0012 23.1 8.3 34 264-297 3-39 (66)
279 PRK08526 threonine dehydratase 61.8 62 0.0014 32.7 9.9 70 44-119 321-394 (403)
280 PF02576 DUF150: Uncharacteris 61.7 46 0.001 28.3 7.8 70 201-273 2-75 (141)
281 COG0779 Uncharacterized protei 61.4 90 0.0019 27.3 9.5 78 195-276 8-90 (153)
282 TIGR02079 THD1 threonine dehyd 61.2 1.5E+02 0.0032 30.0 12.6 66 261-330 324-390 (409)
283 cd04892 ACT_AK-like_2 ACT doma 61.2 19 0.00042 24.9 4.6 32 264-295 2-36 (65)
284 cd04892 ACT_AK-like_2 ACT doma 60.8 51 0.0011 22.6 8.4 45 51-97 2-49 (65)
285 COG4492 PheB ACT domain-contai 60.2 38 0.00082 28.9 6.6 53 44-96 67-120 (150)
286 COG3978 Acetolactate synthase 60.0 80 0.0017 24.5 7.8 65 49-122 3-69 (86)
287 cd04868 ACT_AK-like ACT domain 57.8 20 0.00043 24.2 4.1 30 51-80 2-34 (60)
288 cd04916 ACT_AKiii-YclM-BS_2 AC 57.6 64 0.0014 22.7 8.7 44 51-96 3-49 (66)
289 TIGR02079 THD1 threonine dehyd 56.9 84 0.0018 31.8 9.9 69 45-119 321-390 (409)
290 cd04935 ACT_AKiii-DAPDC_1 ACT 56.8 80 0.0017 23.7 7.5 57 191-253 11-67 (75)
291 PF05088 Bac_GDH: Bacterial NA 55.8 1.2E+02 0.0026 36.1 11.9 125 171-295 473-610 (1528)
292 PRK09224 threonine dehydratase 54.9 2.7E+02 0.0059 29.1 18.3 132 46-218 325-456 (504)
293 COG2061 ACT-domain-containing 53.7 1.5E+02 0.0033 26.0 9.3 31 184-214 5-35 (170)
294 PRK08841 aspartate kinase; Val 53.3 1E+02 0.0022 31.1 9.8 94 183-294 257-350 (392)
295 cd04936 ACT_AKii-LysC-BS-like_ 52.4 33 0.00071 23.8 4.6 42 265-310 3-47 (63)
296 PRK12483 threonine dehydratase 52.3 3.1E+02 0.0066 28.9 16.6 67 45-119 341-408 (521)
297 cd04923 ACT_AK-LysC-DapG-like_ 52.2 33 0.00072 23.8 4.6 31 264-294 2-35 (63)
298 PLN02550 threonine dehydratase 51.0 3.4E+02 0.0074 29.1 14.6 130 46-219 414-544 (591)
299 COG0527 LysC Aspartokinases [A 50.6 3E+02 0.0066 28.3 17.5 33 184-216 383-418 (447)
300 cd04936 ACT_AKii-LysC-BS-like_ 50.1 82 0.0018 21.7 8.1 43 51-97 2-47 (63)
301 cd04918 ACT_AK1-AT_2 ACT domai 49.3 97 0.0021 22.3 7.8 44 264-310 3-49 (65)
302 PRK08639 threonine dehydratase 49.3 1.3E+02 0.0027 30.7 9.8 70 44-119 331-401 (420)
303 PRK10820 DNA-binding transcrip 49.1 26 0.00057 36.7 4.9 36 186-221 2-37 (520)
304 PRK09084 aspartate kinase III; 49.1 3.1E+02 0.0068 28.1 14.7 48 46-97 303-353 (448)
305 PRK14644 hypothetical protein; 48.8 1.7E+02 0.0037 25.0 9.0 78 202-288 5-86 (136)
306 cd04920 ACT_AKiii-DAPDC_2 ACT 48.7 99 0.0021 22.2 8.2 27 51-77 2-31 (63)
307 PRK08639 threonine dehydratase 48.6 1.2E+02 0.0026 30.8 9.5 38 181-218 333-370 (420)
308 PLN02317 arogenate dehydratase 48.0 1.4E+02 0.0029 30.2 9.5 37 184-220 283-319 (382)
309 cd04923 ACT_AK-LysC-DapG-like_ 46.4 95 0.0021 21.4 8.2 31 51-81 2-35 (63)
310 PRK11898 prephenate dehydratas 46.1 1.2E+02 0.0026 29.1 8.7 49 184-232 196-246 (283)
311 PRK14635 hypothetical protein; 43.7 2.3E+02 0.0049 24.9 9.4 96 192-291 3-103 (162)
312 cd04918 ACT_AK1-AT_2 ACT domai 40.9 1.3E+02 0.0029 21.5 8.5 34 187-220 4-39 (65)
313 TIGR01270 Trp_5_monoox tryptop 39.6 64 0.0014 33.3 5.8 51 182-232 29-81 (464)
314 TIGR01268 Phe4hydrox_tetr phen 39.4 1.7E+02 0.0036 30.2 8.7 49 49-97 16-65 (436)
315 TIGR01124 ilvA_2Cterm threonin 39.4 2.1E+02 0.0046 29.8 9.8 66 46-119 322-387 (499)
316 cd04915 ACT_AK-Ectoine_2 ACT d 38.6 1.5E+02 0.0033 21.5 6.6 44 264-310 4-50 (66)
317 PRK14641 hypothetical protein; 38.5 2.4E+02 0.0051 25.2 8.6 77 206-287 20-104 (173)
318 cd04911 ACT_AKiii-YclM-BS_1 AC 37.7 1E+02 0.0022 23.6 5.4 53 271-330 13-65 (76)
319 PRK00907 hypothetical protein; 37.4 2.1E+02 0.0046 22.7 7.5 63 50-119 18-84 (92)
320 cd04933 ACT_AK1-AT_1 ACT domai 37.4 33 0.00071 26.3 2.6 38 56-97 11-48 (78)
321 cd04921 ACT_AKi-HSDH-ThrA-like 36.1 1.8E+02 0.0038 21.4 8.8 45 50-96 2-49 (80)
322 cd04914 ACT_AKi-DapG-BS_1 ACT 35.4 87 0.0019 22.9 4.6 43 264-310 3-46 (67)
323 cd04914 ACT_AKi-DapG-BS_1 ACT 34.4 69 0.0015 23.4 3.9 42 51-96 3-45 (67)
324 PRK08841 aspartate kinase; Val 34.1 2.2E+02 0.0047 28.7 8.7 64 46-123 315-378 (392)
325 PRK00907 hypothetical protein; 33.6 2E+02 0.0044 22.8 6.6 63 185-253 18-84 (92)
326 PTZ00324 glutamate dehydrogena 33.4 2.8E+02 0.0061 31.6 9.9 78 172-249 216-299 (1002)
327 cd04890 ACT_AK-like_1 ACT doma 32.8 50 0.0011 23.2 2.9 37 57-97 11-47 (62)
328 cd04915 ACT_AK-Ectoine_2 ACT d 31.8 2E+02 0.0043 20.8 9.4 46 50-97 3-50 (66)
329 PF04083 Abhydro_lipase: Parti 30.5 1.5E+02 0.0033 21.7 5.1 33 202-234 2-34 (63)
330 PRK09466 metL bifunctional asp 30.2 8.1E+02 0.018 27.4 18.6 32 183-214 390-424 (810)
331 cd07247 SgaA_N_like N-terminal 28.4 2.2E+02 0.0048 22.0 6.4 50 183-238 61-110 (114)
332 PRK14642 hypothetical protein; 28.3 4.6E+02 0.01 23.9 9.8 86 197-288 3-101 (197)
333 cd04920 ACT_AKiii-DAPDC_2 ACT 27.7 2.3E+02 0.005 20.2 8.1 27 186-212 2-31 (63)
334 PRK14637 hypothetical protein; 27.1 4.1E+02 0.009 23.0 8.1 61 59-123 7-67 (151)
335 cd04910 ACT_AK-Ectoine_1 ACT d 26.6 2.8E+02 0.0061 20.9 8.0 59 264-332 3-64 (71)
336 PRK02047 hypothetical protein; 24.7 3.5E+02 0.0075 21.3 6.8 48 49-96 16-67 (91)
337 cd07247 SgaA_N_like N-terminal 24.4 2.3E+02 0.0049 21.9 5.7 49 262-316 62-110 (114)
338 PRK02001 hypothetical protein; 23.6 4.9E+02 0.011 22.6 8.0 77 202-287 12-90 (152)
339 cd04917 ACT_AKiii-LysC-EC_2 AC 23.2 2.8E+02 0.006 19.5 8.6 24 51-74 3-29 (64)
340 KOG0456 Aspartate kinase [Amin 23.1 5.2E+02 0.011 26.4 8.7 138 183-330 392-536 (559)
341 cd04934 ACT_AK-Hom3_1 CT domai 22.8 76 0.0016 23.8 2.4 53 58-119 13-65 (73)
342 cd04907 ACT_ThrD-I_2 Second of 22.2 3.6E+02 0.0078 20.6 7.8 61 264-330 3-63 (81)
343 PRK08961 bifunctional aspartat 22.0 1.1E+03 0.025 26.3 17.5 34 46-79 319-355 (861)
344 PRK00092 ribosome maturation p 21.9 5.2E+02 0.011 22.2 8.2 59 61-123 8-66 (154)
345 PRK00341 hypothetical protein; 21.0 4.2E+02 0.0091 20.9 7.2 46 50-96 18-67 (91)
346 cd07253 Glo_EDI_BRP_like_2 Thi 20.7 2.1E+02 0.0046 22.1 4.9 51 263-316 69-120 (125)
347 COG3283 TyrR Transcriptional r 20.4 2.1E+02 0.0046 29.0 5.4 33 186-218 2-34 (511)
348 PRK05974 phosphoribosylformylg 20.0 4E+02 0.0086 20.2 6.5 57 265-329 3-66 (80)
No 1
>PRK01759 glnD PII uridylyl-transferase; Provisional
Probab=99.96 E-value=3.5e-28 Score=263.34 Aligned_cols=162 Identities=23% Similarity=0.385 Sum_probs=146.6
Q ss_pred CCCCEEEEEc-CCCCEEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEe-cCCeEEEEEEEEeCCCCCCCCHHHHHHH
Q 017268 170 SSRPQVTVLN-IEKDYTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNT-GRTEAYQEFYIRHVDGLPISSEAERERV 247 (374)
Q Consensus 170 ~~~~~V~i~~-~~~~~t~v~V~~~DrpGLl~~i~~~l~~~glnI~~A~i~T-~~g~~~dvF~V~~~~g~~~~~~~~~~~L 247 (374)
..+|.|.+++ .+.++++|+|+++||||||++|+++|+.+|+||++|+|.| .+|+++|+|+|.+++|.++. ++++++|
T Consensus 662 ~~~~~V~i~~~~~~~~t~V~V~~~DrpGLfa~Ia~~L~~~~L~I~~A~I~T~~~g~alD~F~V~d~~g~~~~-~~~~~~l 740 (854)
T PRK01759 662 RGDLLVKISNRFSRGGTEIFIYCQDQANLFLKVVSTIGAKKLSIHDAQIITSQDGYVLDSFIVTELNGKLLE-FDRRRQL 740 (854)
T ss_pred CCCCEEEEEecCCCCeEEEEEEecCCccHHHHHHHHHHHCCCeEEEEEEEEccCCEEEEEEEEeCCCCCCCC-HHHHHHH
Confidence 3568888998 8889999999999999999999999999999999999998 78999999999999999885 5688999
Q ss_pred HHHHHHHHhhc-----------------c-----------CCceEEEEEeCCCccHHHHHHHHHHhCCceEEEEEEeecC
Q 017268 248 IQCLEAAIERR-----------------A-----------SEGLELELCTEDRVGLLSDITRIFRENSLSIKRAEISTIG 299 (374)
Q Consensus 248 ~~~L~~~L~~r-----------------~-----------~~~tvieV~~~DRpGLL~~It~~L~~~~i~I~~a~i~T~g 299 (374)
++.|.++|..+ . ...|+|+|.|.|||||||+|+++|.++|++|++|||+|.|
T Consensus 741 ~~~L~~aL~~~~~~~~~~~~~~~~~~~~~~~~V~~dn~~s~~~T~iev~a~DrpGLL~~I~~~l~~~~l~i~~AkI~T~g 820 (854)
T PRK01759 741 EQALTKALNTNKLKKLNLEENHKLQHFHVKTEVRFLNEEKQEQTEMELFALDRAGLLAQVSQVFSELNLNLLNAKITTIG 820 (854)
T ss_pred HHHHHHHHcCCCCcchhccccccccCCCCCCEEEEccCCCCCeEEEEEEeCCchHHHHHHHHHHHHCCCEEEEEEEcccC
Confidence 99999887421 0 1148999999999999999999999999999999999999
Q ss_pred CeeeeEEEEEcCCCCCCChhHHHHHHHHHhhhh
Q 017268 300 GKVKDTFYVTDVTGNPVDPKIIDSIRRQIGHTK 332 (374)
Q Consensus 300 ~~~~D~Fyv~d~~g~~l~~~~~~~l~~~l~~~~ 332 (374)
++|+|+|||+|.+|.|++++..++|+++|++++
T Consensus 821 erv~D~Fyv~~~~g~~l~~~~~~~l~~~L~~~l 853 (854)
T PRK01759 821 EKAEDFFILTNQQGQALDEEERKALKSRLLSNL 853 (854)
T ss_pred ceEEEEEEEECCCCCcCChHHHHHHHHHHHHHh
Confidence 999999999999999998765599999998865
No 2
>PRK01759 glnD PII uridylyl-transferase; Provisional
Probab=99.96 E-value=1.3e-27 Score=259.01 Aligned_cols=187 Identities=17% Similarity=0.221 Sum_probs=159.6
Q ss_pred CCceeeecCCCCeEEEEEEeCCccchHHHHHHHHHhcCCeEEEEEEEe-eCCeeEEEEEEecCCCCCCCCCHHHHHHHHH
Q 017268 37 LRSSVGVMPTEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWT-HNDRAAAVVHVTDHSTGYAIKDPKRLSTIKE 115 (374)
Q Consensus 37 ~~~~i~~~~~~~~~~I~I~~~DrpGL~a~I~~vL~~~glnI~~A~I~T-~~~~~~dvf~V~~~~~g~~~~~~~~~~~l~~ 115 (374)
+.+.++++++.++++|+|+++||||||++|+++|+.+|+||++|+|+| .+|.+.|+|+|+++ +|.++ +++++++|++
T Consensus 665 ~~V~i~~~~~~~~t~V~V~~~DrpGLfa~Ia~~L~~~~L~I~~A~I~T~~~g~alD~F~V~d~-~g~~~-~~~~~~~l~~ 742 (854)
T PRK01759 665 LLVKISNRFSRGGTEIFIYCQDQANLFLKVVSTIGAKKLSIHDAQIITSQDGYVLDSFIVTEL-NGKLL-EFDRRRQLEQ 742 (854)
T ss_pred CEEEEEecCCCCeEEEEEEecCCccHHHHHHHHHHHCCCeEEEEEEEEccCCEEEEEEEEeCC-CCCCC-CHHHHHHHHH
Confidence 334577788999999999999999999999999999999999999999 57788899999994 78887 4678999999
Q ss_pred HHHHHHcCCCcccccccccCCCCCCcchhhhhhhcccCchhhhhhhhccccCCCCCCCEEEEEc-CCCCEEEEEEEeCCC
Q 017268 116 LLFNVLRGYDDFRKAKTSLSPPGIMNRERRLHQIMFDDRDYERVEKAVGRVEDKSSRPQVTVLN-IEKDYTVITMRSKDR 194 (374)
Q Consensus 116 ~L~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~i~~-~~~~~t~v~V~~~Dr 194 (374)
.|.++|.+... .. .. .+.+++. +.+..+|.|.|+| .+..+|+|+|.++||
T Consensus 743 ~L~~aL~~~~~-------~~-~~-~~~~~~~--------------------~~~~~~~~V~~dn~~s~~~T~iev~a~Dr 793 (854)
T PRK01759 743 ALTKALNTNKL-------KK-LN-LEENHKL--------------------QHFHVKTEVRFLNEEKQEQTEMELFALDR 793 (854)
T ss_pred HHHHHHcCCCC-------cc-hh-ccccccc--------------------cCCCCCCEEEEccCCCCCeEEEEEEeCCc
Confidence 99999998643 11 00 0011110 1345689999999 889999999999999
Q ss_pred cchHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHH
Q 017268 195 PKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRHVDGLPISSEAERERVIQCLEAAI 255 (374)
Q Consensus 195 pGLl~~i~~~l~~~glnI~~A~i~T~~g~~~dvF~V~~~~g~~~~~~~~~~~L~~~L~~~L 255 (374)
||||++|+++|+++|++|+.|+|.|.|+++.|+|||++.+|.+++++.+ ++|+++|..+|
T Consensus 794 pGLL~~I~~~l~~~~l~i~~AkI~T~gerv~D~Fyv~~~~g~~l~~~~~-~~l~~~L~~~l 853 (854)
T PRK01759 794 AGLLAQVSQVFSELNLNLLNAKITTIGEKAEDFFILTNQQGQALDEEER-KALKSRLLSNL 853 (854)
T ss_pred hHHHHHHHHHHHHCCCEEEEEEEcccCceEEEEEEEECCCCCcCChHHH-HHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999987755 99999998765
No 3
>PRK05007 PII uridylyl-transferase; Provisional
Probab=99.96 E-value=1.1e-27 Score=260.39 Aligned_cols=163 Identities=24% Similarity=0.385 Sum_probs=148.0
Q ss_pred CCCEEEEEc-CCCCEEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEec-CCeEEEEEEEEeCCCCCCCCHHHHHHHH
Q 017268 171 SRPQVTVLN-IEKDYTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTG-RTEAYQEFYIRHVDGLPISSEAERERVI 248 (374)
Q Consensus 171 ~~~~V~i~~-~~~~~t~v~V~~~DrpGLl~~i~~~l~~~glnI~~A~i~T~-~g~~~dvF~V~~~~g~~~~~~~~~~~L~ 248 (374)
.+|.|.+++ .+.++++|+|+++||||||++||++|+.+|+||++|+|+|. +|+++|+|+|.+++|.+++ ++++++|+
T Consensus 687 ~~p~V~i~~~~~~~~t~V~V~a~DrpGLfa~Ia~~La~~~L~I~~A~I~T~~dg~alD~F~V~d~~g~~~~-~~~~~~I~ 765 (884)
T PRK05007 687 DKPLVLLSKQATRGGTEIFIWSPDRPYLFAAVCAELDRRNLSVHDAQIFTSRDGMAMDTFIVLEPDGSPLS-QDRHQVIR 765 (884)
T ss_pred CCCeEEEEecCCCCeEEEEEEecCCcCHHHHHHHHHHHCCCEEEEEEEEEcCCCeEEEEEEEECCCCCCCC-HHHHHHHH
Confidence 568888988 88899999999999999999999999999999999999986 5699999999999999885 56899999
Q ss_pred HHHHHHHhhc---------c--------------------CCceEEEEEeCCCccHHHHHHHHHHhCCceEEEEEEeecC
Q 017268 249 QCLEAAIERR---------A--------------------SEGLELELCTEDRVGLLSDITRIFRENSLSIKRAEISTIG 299 (374)
Q Consensus 249 ~~L~~~L~~r---------~--------------------~~~tvieV~~~DRpGLL~~It~~L~~~~i~I~~a~i~T~g 299 (374)
+.|.++|.++ . +..|+|+|.|.|||||||+|+++|.++|++|++|||+|.|
T Consensus 766 ~~L~~aL~~~~~~~~~~~~~~~~~~~~~~~~~V~~d~~~s~~~TvlEV~a~DRpGLL~~I~~~l~~~~l~I~~AkI~T~g 845 (884)
T PRK05007 766 KALEQALTQSSPQPPKPRRLPAKLRHFNVPTEVSFLPTHTDRRSYMELIALDQPGLLARVGKIFADLGISLHGARITTIG 845 (884)
T ss_pred HHHHHHHcCCCCCcccccccccccCCCCCCCEEEEccCCCCCeEEEEEEeCCchHHHHHHHHHHHHCCcEEEEEEEeccC
Confidence 9999888432 0 1248999999999999999999999999999999999999
Q ss_pred CeeeeEEEEEcCCCCCCChhHHHHHHHHHhhhhcc
Q 017268 300 GKVKDTFYVTDVTGNPVDPKIIDSIRRQIGHTKLQ 334 (374)
Q Consensus 300 ~~~~D~Fyv~d~~g~~l~~~~~~~l~~~l~~~~~~ 334 (374)
++|+|+|||++.+|.|++++.+++|+++|+.++..
T Consensus 846 era~DvFyV~~~~g~~l~~~~~~~l~~~L~~~l~~ 880 (884)
T PRK05007 846 ERVEDLFILATADRRALNEELQQELRQRLTEALNP 880 (884)
T ss_pred ceEEEEEEEEcCCCCcCCHHHHHHHHHHHHHHHhh
Confidence 99999999999999999988889999999998743
No 4
>PRK05007 PII uridylyl-transferase; Provisional
Probab=99.96 E-value=2.9e-27 Score=257.07 Aligned_cols=189 Identities=21% Similarity=0.227 Sum_probs=160.6
Q ss_pred CCceeeecCCCCeEEEEEEeCCccchHHHHHHHHHhcCCeEEEEEEEeeCC-eeEEEEEEecCCCCCCCCCHHHHHHHHH
Q 017268 37 LRSSVGVMPTEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHND-RAAAVVHVTDHSTGYAIKDPKRLSTIKE 115 (374)
Q Consensus 37 ~~~~i~~~~~~~~~~I~I~~~DrpGL~a~I~~vL~~~glnI~~A~I~T~~~-~~~dvf~V~~~~~g~~~~~~~~~~~l~~ 115 (374)
+.+.+++.++.++++|+|+++||||||++||++|+.+|+||++|+|+|+++ .+.|+|+|++ .+|.++ +++++++|++
T Consensus 689 p~V~i~~~~~~~~t~V~V~a~DrpGLfa~Ia~~La~~~L~I~~A~I~T~~dg~alD~F~V~d-~~g~~~-~~~~~~~I~~ 766 (884)
T PRK05007 689 PLVLLSKQATRGGTEIFIWSPDRPYLFAAVCAELDRRNLSVHDAQIFTSRDGMAMDTFIVLE-PDGSPL-SQDRHQVIRK 766 (884)
T ss_pred CeEEEEecCCCCeEEEEEEecCCcCHHHHHHHHHHHCCCEEEEEEEEEcCCCeEEEEEEEEC-CCCCCC-CHHHHHHHHH
Confidence 334577788899999999999999999999999999999999999999866 6779999999 478877 4578999999
Q ss_pred HHHHHHcCCCcccccccccCCCCCCcchhhhhhhcccCchhhhhhhhccccCCCCCCCEEEEEc-CCCCEEEEEEEeCCC
Q 017268 116 LLFNVLRGYDDFRKAKTSLSPPGIMNRERRLHQIMFDDRDYERVEKAVGRVEDKSSRPQVTVLN-IEKDYTVITMRSKDR 194 (374)
Q Consensus 116 ~L~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~i~~-~~~~~t~v~V~~~Dr 194 (374)
.|.++|.+..... + .. .+.+++. +++..+|.|.|+| .+..+|+|+|.++||
T Consensus 767 ~L~~aL~~~~~~~--~--~~----~~~~~~~--------------------~~~~~~~~V~~d~~~s~~~TvlEV~a~DR 818 (884)
T PRK05007 767 ALEQALTQSSPQP--P--KP----RRLPAKL--------------------RHFNVPTEVSFLPTHTDRRSYMELIALDQ 818 (884)
T ss_pred HHHHHHcCCCCCc--c--cc----ccccccc--------------------CCCCCCCEEEEccCCCCCeEEEEEEeCCc
Confidence 9999998864311 0 10 1111111 1345789999999 899999999999999
Q ss_pred cchHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHHh
Q 017268 195 PKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRHVDGLPISSEAERERVIQCLEAAIE 256 (374)
Q Consensus 195 pGLl~~i~~~l~~~glnI~~A~i~T~~g~~~dvF~V~~~~g~~~~~~~~~~~L~~~L~~~L~ 256 (374)
||||++|+++|.++|++|+.|+|.|.|+++.|+|||++..|.+++ +++.+.|+++|..+|.
T Consensus 819 pGLL~~I~~~l~~~~l~I~~AkI~T~gera~DvFyV~~~~g~~l~-~~~~~~l~~~L~~~l~ 879 (884)
T PRK05007 819 PGLLARVGKIFADLGISLHGARITTIGERVEDLFILATADRRALN-EELQQELRQRLTEALN 879 (884)
T ss_pred hHHHHHHHHHHHHCCcEEEEEEEeccCceEEEEEEEEcCCCCcCC-HHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999988 5688999999988774
No 5
>PRK00275 glnD PII uridylyl-transferase; Provisional
Probab=99.96 E-value=1e-26 Score=252.86 Aligned_cols=190 Identities=24% Similarity=0.322 Sum_probs=158.4
Q ss_pred eeeecCC---CCeEEEEEEeCCccchHHHHHHHHHhcCCeEEEEEEEeeCC-eeEEEEEEecCCCCCCCC-CHHHHHHHH
Q 017268 40 SVGVMPT---EEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHND-RAAAVVHVTDHSTGYAIK-DPKRLSTIK 114 (374)
Q Consensus 40 ~i~~~~~---~~~~~I~I~~~DrpGL~a~I~~vL~~~glnI~~A~I~T~~~-~~~dvf~V~~~~~g~~~~-~~~~~~~l~ 114 (374)
.++..+. .+.++|+|+++||||||++||++|+.+|+||++|+|+|+++ .+.|+|+|+++ +|.++. ++++|++|+
T Consensus 692 ~~~~~~~~~~~~~t~V~V~~~DrpgLFa~i~g~L~~~~lnI~~A~I~Tt~dg~alD~F~V~d~-~g~~~~~~~~r~~~i~ 770 (895)
T PRK00275 692 LIKETTQREFEGGTQIFIYAPDQHDFFAATVAAMDQLNLNIHDARIITSSSQFTLDTYIVLDD-DGEPIGDNPARIEQIR 770 (895)
T ss_pred EEEecCccCCCCeEEEEEEeCCCCcHHHHHHHHHHHCCCeEEEEEEEEcCCCeEEEEEEEeCC-CCCCccchHHHHHHHH
Confidence 3555554 58999999999999999999999999999999999999765 55699999994 777643 457999999
Q ss_pred HHHHHHHcCCCcccccccccCCCCCCcchhhhhhhcccCchhhhhhhhccccCCCCCCCEEEEEc-CCCCEEEEEEEeCC
Q 017268 115 ELLFNVLRGYDDFRKAKTSLSPPGIMNRERRLHQIMFDDRDYERVEKAVGRVEDKSSRPQVTVLN-IEKDYTVITMRSKD 193 (374)
Q Consensus 115 ~~L~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~i~~-~~~~~t~v~V~~~D 193 (374)
+.|.++|.++..+. ..+. .+.+++. ..+..+|.|.+++ .+.++|+|+|+++|
T Consensus 771 ~~L~~~L~~~~~~~---~~~~----~~~~~~~--------------------~~~~~~~~V~i~~~~~~~~T~i~V~a~D 823 (895)
T PRK00275 771 EGLTEALRNPDDYP---TIIQ----RRVPRQL--------------------KHFAFPTQVTISNDAQRPVTVLEIIAPD 823 (895)
T ss_pred HHHHHHHcCCCccc---hhhh----hhhhhhc--------------------cCCCCCCEEEEEECCCCCeEEEEEEECC
Confidence 99999999865311 0011 1111111 1335679999999 88899999999999
Q ss_pred CcchHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHHhh
Q 017268 194 RPKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRHVDGLPISSEAERERVIQCLEAAIER 257 (374)
Q Consensus 194 rpGLl~~i~~~l~~~glnI~~A~i~T~~g~~~dvF~V~~~~g~~~~~~~~~~~L~~~L~~~L~~ 257 (374)
|||||++|+++|+.+|+||++|+|.|.+|+++|+|||++++|.++.++.++++|+++|.++|..
T Consensus 824 rpGLLa~I~~~L~~~~l~I~~AkI~T~g~~v~D~F~V~d~~g~~l~~~~~~~~l~~~L~~~L~~ 887 (895)
T PRK00275 824 RPGLLARIGRIFLEFDLSLQNAKIATLGERVEDVFFITDADNQPLSDPQLCSRLQDAICEQLDA 887 (895)
T ss_pred CCCHHHHHHHHHHHCCCEEEEeEEEecCCEEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999988878999999999998853
No 6
>PRK04374 PII uridylyl-transferase; Provisional
Probab=99.95 E-value=6.9e-26 Score=245.06 Aligned_cols=181 Identities=23% Similarity=0.254 Sum_probs=151.5
Q ss_pred cCCCCeEEEEEEeCCccchHHHHHHHHHhcCCeEEEEEEEeeC-CeeEEEEEEecCCCCCCCCCHHHHHHHHHHHHHHHc
Q 017268 44 MPTEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHN-DRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLR 122 (374)
Q Consensus 44 ~~~~~~~~I~I~~~DrpGL~a~I~~vL~~~glnI~~A~I~T~~-~~~~dvf~V~~~~~g~~~~~~~~~~~l~~~L~~~L~ 122 (374)
.+..+.++|+|+++|+||||++||++|+.+|+||++|+|+|+. |.+.|+|+|+++ +|.+ +.++++|++.|.++|.
T Consensus 685 ~~~~~~~~v~v~~~d~~gLFa~i~g~l~~~~lnI~~A~i~t~~~g~~ld~f~V~~~-~~~~---~~~~~~i~~~l~~~l~ 760 (869)
T PRK04374 685 VPDNDALEVFVYSPDRDGLFAAIVATLDRKGYGIHRARVLDAPHDAIFDVFEVLPQ-DTYA---DGDPQRLAAALRQVLA 760 (869)
T ss_pred ccCCCeEEEEEEeCCCccHHHHHHHHHHHCCCeEEEEEEEEcCCCEEEEEEEEeCC-CCCC---hHHHHHHHHHHHHHHc
Confidence 6778999999999999999999999999999999999999964 566699999985 5553 2578899999999999
Q ss_pred CCCcccccccccCCCCCCcchhhhhhhcccCchhhhhhhhccccCCCCCCCEEEEEc-CCCCEEEEEEEeCCCcchHHHH
Q 017268 123 GYDDFRKAKTSLSPPGIMNRERRLHQIMFDDRDYERVEKAVGRVEDKSSRPQVTVLN-IEKDYTVITMRSKDRPKLLFDI 201 (374)
Q Consensus 123 ~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~i~~-~~~~~t~v~V~~~DrpGLl~~i 201 (374)
++.... .+. .++.+++. +.+..+|.|.+++ .+.++|+|+|+++||||||++|
T Consensus 761 ~~~~~~----~~~---~~~~~~~~--------------------~~~~~~~~V~~~~~~~~~~t~leI~a~DrpGLLa~I 813 (869)
T PRK04374 761 GDLQKV----RPA---RRAVPRQL--------------------RHFRFAPRVEFSESAGGRRTRISLVAPDRPGLLADV 813 (869)
T ss_pred CCCCcc----ccc---cccCcccc--------------------cCCCCCCeEEEeecCCCCeEEEEEEeCCcCcHHHHH
Confidence 865311 011 11111111 1346789999999 8889999999999999999999
Q ss_pred HHHHHhCCceEEEEEEEecCCeEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHHh
Q 017268 202 VCTLTDMQYVVFHGMVNTGRTEAYQEFYIRHVDGLPISSEAERERVIQCLEAAIE 256 (374)
Q Consensus 202 ~~~l~~~glnI~~A~i~T~~g~~~dvF~V~~~~g~~~~~~~~~~~L~~~L~~~L~ 256 (374)
+++|+++|+||++|+|+|.+|+++|+|||++++|.++.++++ ++|+++|..+|.
T Consensus 814 a~~l~~~~l~I~~AkI~T~g~~a~D~F~V~d~~g~~~~~~~~-~~l~~~L~~~l~ 867 (869)
T PRK04374 814 AHVLRMQHLRVHDARIATFGERAEDQFQITDEHDRPLSESAR-QALRDALCACLD 867 (869)
T ss_pred HHHHHHCCCeEEEeEEEecCCEEEEEEEEECCCCCcCChHHH-HHHHHHHHHHhc
Confidence 999999999999999999999999999999999998777655 999999988763
No 7
>PRK03059 PII uridylyl-transferase; Provisional
Probab=99.95 E-value=1.3e-25 Score=243.30 Aligned_cols=185 Identities=18% Similarity=0.256 Sum_probs=151.5
Q ss_pred ceeeecCCCCeEEEEEEeCCccchHHHHHHHHHhcCCeEEEEEEEeeC-CeeEEEEEEecCCCCCCCCCHHHHHHHHHHH
Q 017268 39 SSVGVMPTEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHN-DRAAAVVHVTDHSTGYAIKDPKRLSTIKELL 117 (374)
Q Consensus 39 ~~i~~~~~~~~~~I~I~~~DrpGL~a~I~~vL~~~glnI~~A~I~T~~-~~~~dvf~V~~~~~g~~~~~~~~~~~l~~~L 117 (374)
+.+...+..+.++|+|+++||||||++||++|+.+|+||++|+|+|+. |.+.|+|+|.++ +|. ..+++++++|++.|
T Consensus 668 v~~~~~~~~~~~~v~i~~~d~~gLFa~i~g~l~~~~l~I~~A~i~t~~~g~~ld~f~V~~~-~~~-~~~~~~~~~i~~~l 745 (856)
T PRK03059 668 VRARLSPAGEGLQVMVYTPDQPDLFARICGYFDRAGFSILDARVHTTRHGYALDTFQVLDP-EED-VHYRDIINLVEHEL 745 (856)
T ss_pred EEEEecCCCCeEEEEEEecCCCcHHHHHHHHHHHCCCceeeeEEEEcCCCeEEEEEEEeCC-CCC-CChHHHHHHHHHHH
Confidence 346667888999999999999999999999999999999999999875 556699999984 555 44667999999999
Q ss_pred HHHHcCCCcccccccccCCCCCCcchhhhhhhcccCchhhhhhhhccccCCCCCCCEEEEEc-CCCCEEEEEEEeCCCcc
Q 017268 118 FNVLRGYDDFRKAKTSLSPPGIMNRERRLHQIMFDDRDYERVEKAVGRVEDKSSRPQVTVLN-IEKDYTVITMRSKDRPK 196 (374)
Q Consensus 118 ~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~i~~-~~~~~t~v~V~~~DrpG 196 (374)
.++|.++.... ..+ ..+.+++. +.+..++.|.+++ .+.++|+|+|+++||||
T Consensus 746 ~~~l~~~~~~~---~~~----~~~~~~~~--------------------~~~~~~~~V~~~~~~~~~~T~i~V~a~DrpG 798 (856)
T PRK03059 746 AERLAEQAPLP---EPS----KGRLSRQV--------------------KHFPITPRVDLRPDERGQYYILSVSANDRPG 798 (856)
T ss_pred HHHHcCCCCcc---hhh----cccccccc--------------------cCCCCCceEEEEEcCCCCEEEEEEEeCCcch
Confidence 99999865311 001 01111111 1345678999998 88899999999999999
Q ss_pred hHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHH
Q 017268 197 LLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRHVDGLPISSEAERERVIQCLEAAI 255 (374)
Q Consensus 197 Ll~~i~~~l~~~glnI~~A~i~T~~g~~~dvF~V~~~~g~~~~~~~~~~~L~~~L~~~L 255 (374)
||++||++|+.+|+||++|+|+|.+|+++|+|||.++. ..+++++++|++.|.++|
T Consensus 799 LLa~Ia~~L~~~~l~I~~AkI~T~~~~v~DvF~V~~~~---~~~~~~~~~l~~~L~~~L 854 (856)
T PRK03059 799 LLYAIARVLAEHRVSVHTAKINTLGERVEDTFLIDGSG---LSDNRLQIQLETELLDAL 854 (856)
T ss_pred HHHHHHHHHHHCCCeEEEEEEeecCCEEEEEEEEcCCC---CCCHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999996433 445678999999998876
No 8
>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase. This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family.
Probab=99.94 E-value=3.3e-25 Score=241.13 Aligned_cols=191 Identities=26% Similarity=0.372 Sum_probs=159.4
Q ss_pred CCceeeecCCCCeEEEEEEeCCccchHHHHHHHHHhcCCeEEEEEEEee-CCeeEEEEEEecCCCCCCCCCHHHHHHHHH
Q 017268 37 LRSSVGVMPTEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTH-NDRAAAVVHVTDHSTGYAIKDPKRLSTIKE 115 (374)
Q Consensus 37 ~~~~i~~~~~~~~~~I~I~~~DrpGL~a~I~~vL~~~glnI~~A~I~T~-~~~~~dvf~V~~~~~g~~~~~~~~~~~l~~ 115 (374)
+.+.+++....+.++|+|+++||||||++|+++|+.+|+||++|+|+|+ ++.+.|+|+|++ .+|.++.+++++++|++
T Consensus 656 ~~v~~~~~~~~~~t~i~V~~~DrpgLla~i~~~L~~~~l~I~~A~I~tt~~g~~lD~F~V~~-~~g~~~~~~~~~~~i~~ 734 (850)
T TIGR01693 656 PLALIDGTRPSGGTEVFIYAPDQPGLFAKVAGALAMLSLSVHDAQVNTTKDGVALDTFVVQD-LFGSPPAAERVFQELLQ 734 (850)
T ss_pred CEEEEeccCCCCeEEEEEEeCCCCcHHHHHHHHHHHCCCeEEEEEEEEecCCEEEEEEEEEC-CCCCCCCcHHHHHHHHH
Confidence 3445666556899999999999999999999999999999999999965 677889999999 47888877778999999
Q ss_pred HHHHHHcCCCcccccccccCCCCCCc-chhhhhhhcccCchhhhhhhhccccCCCCCCCEEEEEc-CCCCEEEEEEEeCC
Q 017268 116 LLFNVLRGYDDFRKAKTSLSPPGIMN-RERRLHQIMFDDRDYERVEKAVGRVEDKSSRPQVTVLN-IEKDYTVITMRSKD 193 (374)
Q Consensus 116 ~L~~~L~~~~~~~~~~~~l~~~~~~~-~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~i~~-~~~~~t~v~V~~~D 193 (374)
.|.++|.+..... ..+. ..+ .+++. +++..+|.|.|+| .+..+|+|+|.|+|
T Consensus 735 ~L~~~L~~~~~~~---~~~~---~~~~~~~~~--------------------~~~~~~~~V~~d~~~s~~~t~~~v~~~D 788 (850)
T TIGR01693 735 GLVDVLAGLAKDP---DTIS---ARRARRRRL--------------------QHFAVPPRVTILNTASRKATIMEVRALD 788 (850)
T ss_pred HHHHHHcCCCccc---cccc---cccCCcccc--------------------cCCCCCCeEEEccCCCCCeEEEEEEECC
Confidence 9999998854311 0010 000 11111 1345789999999 88899999999999
Q ss_pred CcchHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHH
Q 017268 194 RPKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRHVDGLPISSEAERERVIQCLEAAI 255 (374)
Q Consensus 194 rpGLl~~i~~~l~~~glnI~~A~i~T~~g~~~dvF~V~~~~g~~~~~~~~~~~L~~~L~~~L 255 (374)
|||||++|+++|+++|+||.+|+|.|.++++.|+|+|++..|.++.+ ++++.|+++|..+|
T Consensus 789 rpGll~~i~~~l~~~~~~i~~a~i~t~~~~~~d~F~v~~~~g~~~~~-~~~~~l~~~L~~~l 849 (850)
T TIGR01693 789 RPGLLARVGRTLEELGLSIQSAKITTFGEKAEDVFYVTDLFGLKLTD-EEEQRLLEVLAASV 849 (850)
T ss_pred ccHHHHHHHHHHHHCCCeEEEEEEEecCccceeEEEEECCCCCCCCH-HHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999887 58899999988765
No 9
>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase. This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family.
Probab=99.94 E-value=2.1e-25 Score=242.68 Aligned_cols=163 Identities=25% Similarity=0.326 Sum_probs=147.6
Q ss_pred CCCEEEEEc-CCCCEEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEE-ecCCeEEEEEEEEeCCCCCCCCHHHHHHHH
Q 017268 171 SRPQVTVLN-IEKDYTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVN-TGRTEAYQEFYIRHVDGLPISSEAERERVI 248 (374)
Q Consensus 171 ~~~~V~i~~-~~~~~t~v~V~~~DrpGLl~~i~~~l~~~glnI~~A~i~-T~~g~~~dvF~V~~~~g~~~~~~~~~~~L~ 248 (374)
..|.|.+.+ ...++++|+|+++||||||++|+++|+.+|+||++|+|+ |.+|+++|+|+|.+++|.++.+++++++|+
T Consensus 654 ~~~~v~~~~~~~~~~t~i~V~~~DrpgLla~i~~~L~~~~l~I~~A~I~tt~~g~~lD~F~V~~~~g~~~~~~~~~~~i~ 733 (850)
T TIGR01693 654 GGPLALIDGTRPSGGTEVFIYAPDQPGLFAKVAGALAMLSLSVHDAQVNTTKDGVALDTFVVQDLFGSPPAAERVFQELL 733 (850)
T ss_pred CCCEEEEeccCCCCeEEEEEEeCCCCcHHHHHHHHHHHCCCeEEEEEEEEecCCEEEEEEEEECCCCCCCCcHHHHHHHH
Confidence 357888888 668999999999999999999999999999999999999 579999999999999999888877899999
Q ss_pred HHHHHHHhhc------------c--------------------CCceEEEEEeCCCccHHHHHHHHHHhCCceEEEEEEe
Q 017268 249 QCLEAAIERR------------A--------------------SEGLELELCTEDRVGLLSDITRIFRENSLSIKRAEIS 296 (374)
Q Consensus 249 ~~L~~~L~~r------------~--------------------~~~tvieV~~~DRpGLL~~It~~L~~~~i~I~~a~i~ 296 (374)
+.|.++|.++ . +..|+|+|.|.|||||||+|+++|+++|++|++|+|.
T Consensus 734 ~~L~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~d~~~s~~~t~~~v~~~DrpGll~~i~~~l~~~~~~i~~a~i~ 813 (850)
T TIGR01693 734 QGLVDVLAGLAKDPDTISARRARRRRLQHFAVPPRVTILNTASRKATIMEVRALDRPGLLARVGRTLEELGLSIQSAKIT 813 (850)
T ss_pred HHHHHHHcCCCccccccccccCCcccccCCCCCCeEEEccCCCCCeEEEEEEECCccHHHHHHHHHHHHCCCeEEEEEEE
Confidence 9998887431 0 1148999999999999999999999999999999999
Q ss_pred ecCCeeeeEEEEEcCCCCCCChhHHHHHHHHHhhhhc
Q 017268 297 TIGGKVKDTFYVTDVTGNPVDPKIIDSIRRQIGHTKL 333 (374)
Q Consensus 297 T~g~~~~D~Fyv~d~~g~~l~~~~~~~l~~~l~~~~~ 333 (374)
|+|++++|+|||++..|.|+++++++.|+++|+++++
T Consensus 814 t~~~~~~d~F~v~~~~g~~~~~~~~~~l~~~L~~~l~ 850 (850)
T TIGR01693 814 TFGEKAEDVFYVTDLFGLKLTDEEEQRLLEVLAASVA 850 (850)
T ss_pred ecCccceeEEEEECCCCCCCCHHHHHHHHHHHHHHhC
Confidence 9999999999999999999988888999999998764
No 10
>PRK05092 PII uridylyl-transferase; Provisional
Probab=99.94 E-value=1.6e-24 Score=237.40 Aligned_cols=192 Identities=27% Similarity=0.449 Sum_probs=160.6
Q ss_pred eeeecCCCCeEEEEEEeCCccchHHHHHHHHHhcCCeEEEEEEEee-CCeeEEEEEEecCCCCCCCCCHHHHHHHHHHHH
Q 017268 40 SVGVMPTEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTH-NDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLF 118 (374)
Q Consensus 40 ~i~~~~~~~~~~I~I~~~DrpGL~a~I~~vL~~~glnI~~A~I~T~-~~~~~dvf~V~~~~~g~~~~~~~~~~~l~~~L~ 118 (374)
.+++.+..++++|+|+++||||||++|+++|+.+||||++|+|+|+ ++.+.|+|+|+++ +|.+..+++++++|++.|.
T Consensus 723 ~~~~~~~~~~t~v~I~~~Dr~GLfa~i~~~L~~~glnI~~A~I~t~~dg~alD~F~V~~~-~g~~~~~~~~~~~l~~~L~ 801 (931)
T PRK05092 723 EVRPDPARGVTEVTVLAADHPGLFSRIAGACAAAGANIVDARIFTTTDGRALDTFWIQDA-FGRDEDEPRRLARLAKAIE 801 (931)
T ss_pred EEEecCCCCeEEEEEEeCCCCcHHHHHHHHHHHCCCcEEEEEEEEecCCeEEEEEEEECC-CCCCCCCHHHHHHHHHHHH
Confidence 4667778899999999999999999999999999999999999996 4556699999984 6776667789999999999
Q ss_pred HHHcCCCcccccccccCCCCCCcchhhhhhhcccCchhhhhhhhccccCCCCCCCEEEEEc-CCCCEEEEEEEeCCCcch
Q 017268 119 NVLRGYDDFRKAKTSLSPPGIMNRERRLHQIMFDDRDYERVEKAVGRVEDKSSRPQVTVLN-IEKDYTVITMRSKDRPKL 197 (374)
Q Consensus 119 ~~L~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~i~~-~~~~~t~v~V~~~DrpGL 197 (374)
+++.+...+. ..+. ....+++ + ...+..+|.|.+++ .+.++++|.|+++|||||
T Consensus 802 ~~l~~~~~~~---~~~~---~r~~~~~-~------------------~~~~~~~~~V~~~~~~s~~~t~i~I~~~DrpGL 856 (931)
T PRK05092 802 DALSGEVRLP---EALA---KRTKPKK-R------------------ARAFHVPPRVTIDNEASNRFTVIEVNGRDRPGL 856 (931)
T ss_pred HHHcCCCCCc---cccc---cccCccc-c------------------ccCCCCCCEEEEeeCCCCCeEEEEEEECCcCcH
Confidence 9998764311 0010 0000100 0 01345679999999 888999999999999999
Q ss_pred HHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHHhh
Q 017268 198 LFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRHVDGLPISSEAERERVIQCLEAAIER 257 (374)
Q Consensus 198 l~~i~~~l~~~glnI~~A~i~T~~g~~~dvF~V~~~~g~~~~~~~~~~~L~~~L~~~L~~ 257 (374)
|++|+++|+++|+||.+|+|.|.++++.|+|+|++.+|.++.+++.+++|++.|.+.|..
T Consensus 857 l~~I~~~l~~~gl~I~~A~I~T~~~~~~D~F~v~d~~g~~i~~~~~~~~l~~~L~~~L~~ 916 (931)
T PRK05092 857 LYDLTRALSDLNLNIASAHIATYGERAVDVFYVTDLFGLKITNEARQAAIRRALLAALAE 916 (931)
T ss_pred HHHHHHHHHHCCceEEEEEEEEcCCEEEEEEEEeCCCCCcCCCHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999998888899999999998854
No 11
>PRK03381 PII uridylyl-transferase; Provisional
Probab=99.93 E-value=1.5e-24 Score=233.06 Aligned_cols=181 Identities=24% Similarity=0.289 Sum_probs=145.7
Q ss_pred eeeecCCCCeEEEEEEeCCccchHHHHHHHHHhcCCeEEEEEEEeeCCeeEEEEEEecCCCCCCCCCHHHHHHHHHHHHH
Q 017268 40 SVGVMPTEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFN 119 (374)
Q Consensus 40 ~i~~~~~~~~~~I~I~~~DrpGL~a~I~~vL~~~glnI~~A~I~T~~~~~~dvf~V~~~~~g~~~~~~~~~~~l~~~L~~ 119 (374)
.++..+ .+.++|+|+|+||||||++||++|+.+||||++|+|+|.++.+.|+|+|+++ +|.+. .++++++.|.+
T Consensus 591 ~~~~~~-~~~~~V~V~~~DrpGLfa~i~~vL~~~glnI~dA~i~t~dg~~ld~F~V~~~-~~~~~----~~~~l~~~L~~ 664 (774)
T PRK03381 591 EIAPAD-PHMVEVTVVAPDRRGLLSKAAGVLALHRLRVRSASVRSHDGVAVLEFVVSPR-FGSPP----DAALLRQDLRR 664 (774)
T ss_pred EEeeCC-CCeEEEEEEecCCccHHHHHHHHHHHCCCeEEEeEEEecCCEEEEEEEEECC-CCCcc----hHHHHHHHHHH
Confidence 355566 8999999999999999999999999999999999999988888899999984 56542 36889999999
Q ss_pred HHcCCCcccccccccCCCCCCcchhhhhhhcccCchhhhhhhhccccCCCCCCCEEEEEc-CCCCEEEEEEEeCCCcchH
Q 017268 120 VLRGYDDFRKAKTSLSPPGIMNRERRLHQIMFDDRDYERVEKAVGRVEDKSSRPQVTVLN-IEKDYTVITMRSKDRPKLL 198 (374)
Q Consensus 120 ~L~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~i~~-~~~~~t~v~V~~~DrpGLl 198 (374)
+|.++.... ..+. ++.... .... ...+..++.|.+++ .+.++++|+|+++||||||
T Consensus 665 ~L~~~~~~~---~~~~--------~~~~~~----~~~~--------~~~~~~~~~v~~~~~~~~~~t~i~V~a~DrpGLl 721 (774)
T PRK03381 665 ALDGDLDVL---ARLA--------AREAAA----AAVP--------VRRPAAPPRVLWLDGASPDATVLEVRAADRPGLL 721 (774)
T ss_pred HHcCCCchh---hhhh--------cccccc----cccc--------cccCCCCcEEEEEECCCCCeEEEEEEeCCchhHH
Confidence 999854311 0010 000000 0000 01345678999999 7778999999999999999
Q ss_pred HHHHHHHHhCCceEEEEEEEecCCeEEEEEEEEeCCCCCCCCHHHHHHHHHHH
Q 017268 199 FDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRHVDGLPISSEAERERVIQCL 251 (374)
Q Consensus 199 ~~i~~~l~~~glnI~~A~i~T~~g~~~dvF~V~~~~g~~~~~~~~~~~L~~~L 251 (374)
++|+++|+.+|+||++|+|+|.||+++|+|||++++|.+++++ .+.|+++|
T Consensus 722 a~Ia~~L~~~~lnI~~AkI~T~g~~a~D~F~V~d~~g~~~~~~--~~~l~~~L 772 (774)
T PRK03381 722 ARLARALERAGVDVRWARVATLGADVVDVFYVTGAAGGPLADA--RAAVEQAV 772 (774)
T ss_pred HHHHHHHHHCCCeEEEEEEeecCCeEEEEEEEECCCCCcCchH--HHHHHHHh
Confidence 9999999999999999999999999999999999999998864 67777765
No 12
>PRK00275 glnD PII uridylyl-transferase; Provisional
Probab=99.93 E-value=2.5e-24 Score=234.27 Aligned_cols=164 Identities=24% Similarity=0.383 Sum_probs=143.2
Q ss_pred CCEEEEEc-CC---CCEEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEe-cCCeEEEEEEEEeCCCCCCC-CHHHHH
Q 017268 172 RPQVTVLN-IE---KDYTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNT-GRTEAYQEFYIRHVDGLPIS-SEAERE 245 (374)
Q Consensus 172 ~~~V~i~~-~~---~~~t~v~V~~~DrpGLl~~i~~~l~~~glnI~~A~i~T-~~g~~~dvF~V~~~~g~~~~-~~~~~~ 245 (374)
.|.|.+.+ .. .+.++|.|+++||||||+++|++|+.+|+||++|+|+| .+|+++|+|+|.+++|.++. ++++++
T Consensus 688 ~~~v~~~~~~~~~~~~~t~V~V~~~DrpgLFa~i~g~L~~~~lnI~~A~I~Tt~dg~alD~F~V~d~~g~~~~~~~~r~~ 767 (895)
T PRK00275 688 GPLVLIKETTQREFEGGTQIFIYAPDQHDFFAATVAAMDQLNLNIHDARIITSSSQFTLDTYIVLDDDGEPIGDNPARIE 767 (895)
T ss_pred CCeEEEEecCccCCCCeEEEEEEeCCCCcHHHHHHHHHHHCCCeEEEEEEEEcCCCeEEEEEEEeCCCCCCccchHHHHH
Confidence 45566766 43 58999999999999999999999999999999999987 57899999999999998854 457899
Q ss_pred HHHHHHHHHHhhcc------------------------------CCceEEEEEeCCCccHHHHHHHHHHhCCceEEEEEE
Q 017268 246 RVIQCLEAAIERRA------------------------------SEGLELELCTEDRVGLLSDITRIFRENSLSIKRAEI 295 (374)
Q Consensus 246 ~L~~~L~~~L~~r~------------------------------~~~tvieV~~~DRpGLL~~It~~L~~~~i~I~~a~i 295 (374)
+|++.|.++|.++. ...|+|+|.+.||||||++|+.+|+++|++|+.|+|
T Consensus 768 ~i~~~L~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~~T~i~V~a~DrpGLLa~I~~~L~~~~l~I~~AkI 847 (895)
T PRK00275 768 QIREGLTEALRNPDDYPTIIQRRVPRQLKHFAFPTQVTISNDAQRPVTVLEIIAPDRPGLLARIGRIFLEFDLSLQNAKI 847 (895)
T ss_pred HHHHHHHHHHcCCCccchhhhhhhhhhccCCCCCCEEEEEECCCCCeEEEEEEECCCCCHHHHHHHHHHHCCCEEEEeEE
Confidence 99999998874210 114899999999999999999999999999999999
Q ss_pred eecCCeeeeEEEEEcCCCCCCCh-hHHHHHHHHHhhhhccc
Q 017268 296 STIGGKVKDTFYVTDVTGNPVDP-KIIDSIRRQIGHTKLQV 335 (374)
Q Consensus 296 ~T~g~~~~D~Fyv~d~~g~~l~~-~~~~~l~~~l~~~~~~~ 335 (374)
.|.|+++.|+|||++.+|.|+++ +.+++|+++|..++.+.
T Consensus 848 ~T~g~~v~D~F~V~d~~g~~l~~~~~~~~l~~~L~~~L~~~ 888 (895)
T PRK00275 848 ATLGERVEDVFFITDADNQPLSDPQLCSRLQDAICEQLDAR 888 (895)
T ss_pred EecCCEEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999975 68899999999977443
No 13
>PRK04374 PII uridylyl-transferase; Provisional
Probab=99.92 E-value=8.7e-24 Score=228.81 Aligned_cols=158 Identities=22% Similarity=0.343 Sum_probs=137.4
Q ss_pred CEEEE-Ec-CCCCEEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEe-cCCeEEEEEEEEeCCCCCCCCHHHHHHHHH
Q 017268 173 PQVTV-LN-IEKDYTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNT-GRTEAYQEFYIRHVDGLPISSEAERERVIQ 249 (374)
Q Consensus 173 ~~V~i-~~-~~~~~t~v~V~~~DrpGLl~~i~~~l~~~glnI~~A~i~T-~~g~~~dvF~V~~~~g~~~~~~~~~~~L~~ 249 (374)
|.|.+ .. +..+.+.|.|+++|+||||++||++|+.+|+||++|+|+| .+|+++|+|+|.++.|.. +..++++++
T Consensus 677 ~~v~~~~~~~~~~~~~v~v~~~d~~gLFa~i~g~l~~~~lnI~~A~i~t~~~g~~ld~f~V~~~~~~~---~~~~~~i~~ 753 (869)
T PRK04374 677 TLVKARRAVPDNDALEVFVYSPDRDGLFAAIVATLDRKGYGIHRARVLDAPHDAIFDVFEVLPQDTYA---DGDPQRLAA 753 (869)
T ss_pred CeEEEeeeccCCCeEEEEEEeCCCccHHHHHHHHHHHCCCeEEEEEEEEcCCCEEEEEEEEeCCCCCC---hHHHHHHHH
Confidence 44443 33 5668999999999999999999999999999999999998 589999999999988864 346888999
Q ss_pred HHHHHHhhc----------c--------------------CCceEEEEEeCCCccHHHHHHHHHHhCCceEEEEEEeecC
Q 017268 250 CLEAAIERR----------A--------------------SEGLELELCTEDRVGLLSDITRIFRENSLSIKRAEISTIG 299 (374)
Q Consensus 250 ~L~~~L~~r----------~--------------------~~~tvieV~~~DRpGLL~~It~~L~~~~i~I~~a~i~T~g 299 (374)
.|.++|.++ . ...|+|+|.+.|||||||+|+.+|+++|++|+.|+|+|.|
T Consensus 754 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~t~leI~a~DrpGLLa~Ia~~l~~~~l~I~~AkI~T~g 833 (869)
T PRK04374 754 ALRQVLAGDLQKVRPARRAVPRQLRHFRFAPRVEFSESAGGRRTRISLVAPDRPGLLADVAHVLRMQHLRVHDARIATFG 833 (869)
T ss_pred HHHHHHcCCCCccccccccCcccccCCCCCCeEEEeecCCCCeEEEEEEeCCcCcHHHHHHHHHHHCCCeEEEeEEEecC
Confidence 998887431 0 0148999999999999999999999999999999999999
Q ss_pred CeeeeEEEEEcCCCCCCChhHHHHHHHHHhhhhc
Q 017268 300 GKVKDTFYVTDVTGNPVDPKIIDSIRRQIGHTKL 333 (374)
Q Consensus 300 ~~~~D~Fyv~d~~g~~l~~~~~~~l~~~l~~~~~ 333 (374)
+++.|+|||+|.+|.++++..+++|+++|++++.
T Consensus 834 ~~a~D~F~V~d~~g~~~~~~~~~~l~~~L~~~l~ 867 (869)
T PRK04374 834 ERAEDQFQITDEHDRPLSESARQALRDALCACLD 867 (869)
T ss_pred CEEEEEEEEECCCCCcCChHHHHHHHHHHHHHhc
Confidence 9999999999999999876555999999998774
No 14
>PRK05092 PII uridylyl-transferase; Provisional
Probab=99.92 E-value=2e-23 Score=228.84 Aligned_cols=172 Identities=24% Similarity=0.291 Sum_probs=150.2
Q ss_pred CCCEEEEEc-CCCCEEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEe-cCCeEEEEEEEEeCCCCCCCCHHHHHHHH
Q 017268 171 SRPQVTVLN-IEKDYTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNT-GRTEAYQEFYIRHVDGLPISSEAERERVI 248 (374)
Q Consensus 171 ~~~~V~i~~-~~~~~t~v~V~~~DrpGLl~~i~~~l~~~glnI~~A~i~T-~~g~~~dvF~V~~~~g~~~~~~~~~~~L~ 248 (374)
.++.|.+.+ ...+.++|+|+++||||||++|+++|+.+|+||++|+|+| .+|+++|+|+|.++.|.+..+++++++|+
T Consensus 718 ~~~~v~~~~~~~~~~t~v~I~~~Dr~GLfa~i~~~L~~~glnI~~A~I~t~~dg~alD~F~V~~~~g~~~~~~~~~~~l~ 797 (931)
T PRK05092 718 RPLATEVRPDPARGVTEVTVLAADHPGLFSRIAGACAAAGANIVDARIFTTTDGRALDTFWIQDAFGRDEDEPRRLARLA 797 (931)
T ss_pred CCcEEEEEecCCCCeEEEEEEeCCCCcHHHHHHHHHHHCCCcEEEEEEEEecCCeEEEEEEEECCCCCCCCCHHHHHHHH
Confidence 457777888 7778999999999999999999999999999999999998 58899999999999888877778999999
Q ss_pred HHHHHHHhh----------c-cC---------------------CceEEEEEeCCCccHHHHHHHHHHhCCceEEEEEEe
Q 017268 249 QCLEAAIER----------R-AS---------------------EGLELELCTEDRVGLLSDITRIFRENSLSIKRAEIS 296 (374)
Q Consensus 249 ~~L~~~L~~----------r-~~---------------------~~tvieV~~~DRpGLL~~It~~L~~~~i~I~~a~i~ 296 (374)
+.|..++.+ + .+ ..|+|+|.+.||||||++|+++|+++|++|++|+|.
T Consensus 798 ~~L~~~l~~~~~~~~~~~~r~~~~~~~~~~~~~~~V~~~~~~s~~~t~i~I~~~DrpGLl~~I~~~l~~~gl~I~~A~I~ 877 (931)
T PRK05092 798 KAIEDALSGEVRLPEALAKRTKPKKRARAFHVPPRVTIDNEASNRFTVIEVNGRDRPGLLYDLTRALSDLNLNIASAHIA 877 (931)
T ss_pred HHHHHHHcCCCCCccccccccCccccccCCCCCCEEEEeeCCCCCeEEEEEEECCcCcHHHHHHHHHHHCCceEEEEEEE
Confidence 999888732 1 01 148999999999999999999999999999999999
Q ss_pred ecCCeeeeEEEEEcCCCCCCCh-hHHHHHHHHHhhhhcccccccccC
Q 017268 297 TIGGKVKDTFYVTDVTGNPVDP-KIIDSIRRQIGHTKLQVKRSTILA 342 (374)
Q Consensus 297 T~g~~~~D~Fyv~d~~g~~l~~-~~~~~l~~~l~~~~~~~~~~~~~~ 342 (374)
|.|+++.|+|||++.+|.++.+ +.+++|+++|..++..-..++..+
T Consensus 878 T~~~~~~D~F~v~d~~g~~i~~~~~~~~l~~~L~~~L~~~~~~~~~~ 924 (931)
T PRK05092 878 TYGERAVDVFYVTDLFGLKITNEARQAAIRRALLAALAEGEAEARAA 924 (931)
T ss_pred EcCCEEEEEEEEeCCCCCcCCCHHHHHHHHHHHHHHhcCcccccccc
Confidence 9999999999999999999864 578899999999886544444433
No 15
>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=1.6e-23 Score=217.18 Aligned_cols=185 Identities=27% Similarity=0.422 Sum_probs=150.2
Q ss_pred eeeecCCCCeEEEEEEeCCccchHHHHHHHHHhcCCeEEEEEEEeeCCe-eEEEEEEecCCCCCCCCCHHHHHHHHHHHH
Q 017268 40 SVGVMPTEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDR-AAAVVHVTDHSTGYAIKDPKRLSTIKELLF 118 (374)
Q Consensus 40 ~i~~~~~~~~~~I~I~~~DrpGL~a~I~~vL~~~glnI~~A~I~T~~~~-~~dvf~V~~~~~g~~~~~~~~~~~l~~~L~ 118 (374)
.+++.+..+.++|+|+++|+|.||+.+|+++...|+||++|+|+|+.++ +.|+|+|+++ +|.++. +++...++..|.
T Consensus 675 ~~~~r~~~~~teV~V~a~d~p~Lfa~v~~~~~~~g~~i~dAqi~tt~dG~alDtfiv~~~-~g~~~~-~dr~~~~~~~l~ 752 (867)
T COG2844 675 LISVRPHSGGTEVFVYAPDRPRLFAVVCAALSRRGLSIVDAQIFTTRDGYALDTFIVLEP-DGFPVE-EDRRAALRGELI 752 (867)
T ss_pred eeeecccCCceEEEEEcCCCccHHHHHHHHHccCCCceeeeEEEEccCCceeeeEEEecC-CCCccc-hhHHHHHHHHHH
Confidence 4556677799999999999999999999999999999999999997655 6799999995 788775 567777888888
Q ss_pred HHHcCCCcccccccccCCCCCCcchhhhhhhcccCchhhhhhhhccccCCCCCCCEEEEEc-CCCCEEEEEEEeCCCcch
Q 017268 119 NVLRGYDDFRKAKTSLSPPGIMNRERRLHQIMFDDRDYERVEKAVGRVEDKSSRPQVTVLN-IEKDYTVITMRSKDRPKL 197 (374)
Q Consensus 119 ~~L~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~i~~-~~~~~t~v~V~~~DrpGL 197 (374)
+++..... . |+..++.+++.+ .+..+|.|.|.+ .+...++++|.+.|||||
T Consensus 753 ~~l~s~~~-~-------~~~~~r~~r~~~--------------------~f~i~p~v~i~~t~~~~~t~lEv~alDRpGL 804 (867)
T COG2844 753 EALLSGKA-Q-------PPRRRRIPRKLR--------------------HFPIPPRVTILPTASNDKTVLEVRALDRPGL 804 (867)
T ss_pred HHHhcCCC-C-------CccccccCcccc--------------------eeccCCceeeccccCCCceEEEEEeCCcccH
Confidence 87765332 1 011123333322 345789999999 777899999999999999
Q ss_pred HHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHH
Q 017268 198 LFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRHVDGLPISSEAERERVIQCLEAAI 255 (374)
Q Consensus 198 l~~i~~~l~~~glnI~~A~i~T~~g~~~dvF~V~~~~g~~~~~~~~~~~L~~~L~~~L 255 (374)
|++++++|++++++|++|+|.|.|+++.|+|+|++..|.++.++ ..+.+.+.|.+.+
T Consensus 805 La~v~~v~~dl~l~i~~AkItT~GErveD~F~vt~~~~~~l~~~-~~q~l~~~ll~al 861 (867)
T COG2844 805 LAALAGVFADLGLSLHSAKITTFGERVEDVFIVTDADGQALNAE-LRQSLLQRLLEAL 861 (867)
T ss_pred HHHHHHHHHhcccceeeeeeccccccceeEEEEeccccccCCHH-HHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999988654 5555555555444
No 16
>PRK03381 PII uridylyl-transferase; Provisional
Probab=99.91 E-value=2.5e-23 Score=223.61 Aligned_cols=153 Identities=25% Similarity=0.342 Sum_probs=133.1
Q ss_pred CCCEEEEEc-CCCCEEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEEeCCCCCCCCHHHHHHHHH
Q 017268 171 SRPQVTVLN-IEKDYTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRHVDGLPISSEAERERVIQ 249 (374)
Q Consensus 171 ~~~~V~i~~-~~~~~t~v~V~~~DrpGLl~~i~~~l~~~glnI~~A~i~T~~g~~~dvF~V~~~~g~~~~~~~~~~~L~~ 249 (374)
..+.|.+.+ . .+.++|+|+++||||||++||++|+.+|+||++|+|+|.+|+++|+|+|.++.|.+. .++++++
T Consensus 586 ~~~~v~~~~~~-~~~~~V~V~~~DrpGLfa~i~~vL~~~glnI~dA~i~t~dg~~ld~F~V~~~~~~~~----~~~~l~~ 660 (774)
T PRK03381 586 GGVHVEIAPAD-PHMVEVTVVAPDRRGLLSKAAGVLALHRLRVRSASVRSHDGVAVLEFVVSPRFGSPP----DAALLRQ 660 (774)
T ss_pred CCCEEEEeeCC-CCeEEEEEEecCCccHHHHHHHHHHHCCCeEEEeEEEecCCEEEEEEEEECCCCCcc----hHHHHHH
Confidence 356777877 7 899999999999999999999999999999999999999999999999999888653 2466777
Q ss_pred HHHHHHhh----------c--c---------------------C-CceEEEEEeCCCccHHHHHHHHHHhCCceEEEEEE
Q 017268 250 CLEAAIER----------R--A---------------------S-EGLELELCTEDRVGLLSDITRIFRENSLSIKRAEI 295 (374)
Q Consensus 250 ~L~~~L~~----------r--~---------------------~-~~tvieV~~~DRpGLL~~It~~L~~~~i~I~~a~i 295 (374)
.|.++|.+ + . + ..|+|+|.+.||||||++|+.+|+++|+||++|+|
T Consensus 661 ~L~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~t~i~V~a~DrpGLla~Ia~~L~~~~lnI~~AkI 740 (774)
T PRK03381 661 DLRRALDGDLDVLARLAAREAAAAAVPVRRPAAPPRVLWLDGASPDATVLEVRAADRPGLLARLARALERAGVDVRWARV 740 (774)
T ss_pred HHHHHHcCCCchhhhhhcccccccccccccCCCCcEEEEEECCCCCeEEEEEEeCCchhHHHHHHHHHHHCCCeEEEEEE
Confidence 77665431 1 0 0 13899999999999999999999999999999999
Q ss_pred eecCCeeeeEEEEEcCCCCCCChhHHHHHHHHHh
Q 017268 296 STIGGKVKDTFYVTDVTGNPVDPKIIDSIRRQIG 329 (374)
Q Consensus 296 ~T~g~~~~D~Fyv~d~~g~~l~~~~~~~l~~~l~ 329 (374)
.|.|+++.|+|||++.+|.+++++ +++|+++|+
T Consensus 741 ~T~g~~a~D~F~V~d~~g~~~~~~-~~~l~~~L~ 773 (774)
T PRK03381 741 ATLGADVVDVFYVTGAAGGPLADA-RAAVEQAVL 773 (774)
T ss_pred eecCCeEEEEEEEECCCCCcCchH-HHHHHHHhh
Confidence 999999999999999999999866 788888775
No 17
>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=2.2e-23 Score=216.28 Aligned_cols=162 Identities=26% Similarity=0.396 Sum_probs=142.1
Q ss_pred CCEEEEEc-CCCCEEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEe-cCCeEEEEEEEEeCCCCCCCCHHHHHHHHH
Q 017268 172 RPQVTVLN-IEKDYTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNT-GRTEAYQEFYIRHVDGLPISSEAERERVIQ 249 (374)
Q Consensus 172 ~~~V~i~~-~~~~~t~v~V~~~DrpGLl~~i~~~l~~~glnI~~A~i~T-~~g~~~dvF~V~~~~g~~~~~~~~~~~L~~ 249 (374)
.|.|.+.. ...+.++|.|+++|+|.||+.+|+.+...|+||++|+|+| .+|+++|+|+|.+++|.++. +.+...++.
T Consensus 671 ~~Lv~~~~r~~~~~teV~V~a~d~p~Lfa~v~~~~~~~g~~i~dAqi~tt~dG~alDtfiv~~~~g~~~~-~dr~~~~~~ 749 (867)
T COG2844 671 KPLVLISVRPHSGGTEVFVYAPDRPRLFAVVCAALSRRGLSIVDAQIFTTRDGYALDTFIVLEPDGFPVE-EDRRAALRG 749 (867)
T ss_pred CcceeeeecccCCceEEEEEcCCCccHHHHHHHHHccCCCceeeeEEEEccCCceeeeEEEecCCCCccc-hhHHHHHHH
Confidence 46666666 6668999999999999999999999999999999999988 58999999999999999888 568888888
Q ss_pred HHHHHHh-h--------cc----------C----------CceEEEEEeCCCccHHHHHHHHHHhCCceEEEEEEeecCC
Q 017268 250 CLEAAIE-R--------RA----------S----------EGLELELCTEDRVGLLSDITRIFRENSLSIKRAEISTIGG 300 (374)
Q Consensus 250 ~L~~~L~-~--------r~----------~----------~~tvieV~~~DRpGLL~~It~~L~~~~i~I~~a~i~T~g~ 300 (374)
.|.+++. . +. | +.|+|||.+.||||||++|+++|++++++|++|||+|.|+
T Consensus 750 ~l~~~l~s~~~~~~~~~r~~r~~~~f~i~p~v~i~~t~~~~~t~lEv~alDRpGLLa~v~~v~~dl~l~i~~AkItT~GE 829 (867)
T COG2844 750 ELIEALLSGKAQPPRRRRIPRKLRHFPIPPRVTILPTASNDKTVLEVRALDRPGLLAALAGVFADLGLSLHSAKITTFGE 829 (867)
T ss_pred HHHHHHhcCCCCCccccccCcccceeccCCceeeccccCCCceEEEEEeCCcccHHHHHHHHHHhcccceeeeeeccccc
Confidence 8877762 1 10 1 1489999999999999999999999999999999999999
Q ss_pred eeeeEEEEEcCCCCCCChhHHHHHHHHHhhhhcc
Q 017268 301 KVKDTFYVTDVTGNPVDPKIIDSIRRQIGHTKLQ 334 (374)
Q Consensus 301 ~~~D~Fyv~d~~g~~l~~~~~~~l~~~l~~~~~~ 334 (374)
+|+|+|||++..|.+++++..+.+.+.+..++..
T Consensus 830 rveD~F~vt~~~~~~l~~~~~q~l~~~ll~al~~ 863 (867)
T COG2844 830 RVEDVFIVTDADGQALNAELRQSLLQRLLEALLP 863 (867)
T ss_pred cceeEEEEeccccccCCHHHHHHHHHHHHHHhcc
Confidence 9999999999999999888778888888776654
No 18
>PRK03059 PII uridylyl-transferase; Provisional
Probab=99.90 E-value=1e-22 Score=220.76 Aligned_cols=157 Identities=20% Similarity=0.287 Sum_probs=135.5
Q ss_pred CCEEEEEc-CCCCEEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEe-cCCeEEEEEEEEeCCCCCCCCHHHHHHHHH
Q 017268 172 RPQVTVLN-IEKDYTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNT-GRTEAYQEFYIRHVDGLPISSEAERERVIQ 249 (374)
Q Consensus 172 ~~~V~i~~-~~~~~t~v~V~~~DrpGLl~~i~~~l~~~glnI~~A~i~T-~~g~~~dvF~V~~~~g~~~~~~~~~~~L~~ 249 (374)
.|.|.+.+ +..+.+.|.|+++||||||+++|++|+.+|+||++|+|+| .+|.++|+|+|.++.|. ...+.+++++++
T Consensus 665 ~~~v~~~~~~~~~~~~v~i~~~d~~gLFa~i~g~l~~~~l~I~~A~i~t~~~g~~ld~f~V~~~~~~-~~~~~~~~~i~~ 743 (856)
T PRK03059 665 TPIVRARLSPAGEGLQVMVYTPDQPDLFARICGYFDRAGFSILDARVHTTRHGYALDTFQVLDPEED-VHYRDIINLVEH 743 (856)
T ss_pred CCeEEEEecCCCCeEEEEEEecCCCcHHHHHHHHHHHCCCceeeeEEEEcCCCeEEEEEEEeCCCCC-CChHHHHHHHHH
Confidence 46666777 7778999999999999999999999999999999999987 58999999999998777 445678999999
Q ss_pred HHHHHHhhc----------c--------------------CCceEEEEEeCCCccHHHHHHHHHHhCCceEEEEEEeecC
Q 017268 250 CLEAAIERR----------A--------------------SEGLELELCTEDRVGLLSDITRIFRENSLSIKRAEISTIG 299 (374)
Q Consensus 250 ~L~~~L~~r----------~--------------------~~~tvieV~~~DRpGLL~~It~~L~~~~i~I~~a~i~T~g 299 (374)
.|.++|.++ . +..|+|+|.++||||||++|+.+|+++|++|+.|+|.|.|
T Consensus 744 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~T~i~V~a~DrpGLLa~Ia~~L~~~~l~I~~AkI~T~~ 823 (856)
T PRK03059 744 ELAERLAEQAPLPEPSKGRLSRQVKHFPITPRVDLRPDERGQYYILSVSANDRPGLLYAIARVLAEHRVSVHTAKINTLG 823 (856)
T ss_pred HHHHHHcCCCCcchhhcccccccccCCCCCceEEEEEcCCCCEEEEEEEeCCcchHHHHHHHHHHHCCCeEEEEEEeecC
Confidence 999887421 0 1148999999999999999999999999999999999999
Q ss_pred CeeeeEEEEEcCCCCCC-ChhHHHHHHHHHhhhh
Q 017268 300 GKVKDTFYVTDVTGNPV-DPKIIDSIRRQIGHTK 332 (374)
Q Consensus 300 ~~~~D~Fyv~d~~g~~l-~~~~~~~l~~~l~~~~ 332 (374)
+++.|+|||++ .++ +++++++|+++|.+++
T Consensus 824 ~~v~DvF~V~~---~~~~~~~~~~~l~~~L~~~L 854 (856)
T PRK03059 824 ERVEDTFLIDG---SGLSDNRLQIQLETELLDAL 854 (856)
T ss_pred CEEEEEEEEcC---CCCCCHHHHHHHHHHHHHHh
Confidence 99999999954 334 3568899999998765
No 19
>cd04897 ACT_ACR_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.83 E-value=3e-20 Score=142.25 Aligned_cols=71 Identities=15% Similarity=0.217 Sum_probs=67.3
Q ss_pred eEEEEEeCCCccHHHHHHHHHHhCCceEEEEEEeecCCeeeeEEEEEcCCCCCCC-hhHHHHHHHHHhhhhc
Q 017268 263 LELELCTEDRVGLLSDITRIFRENSLSIKRAEISTIGGKVKDTFYVTDVTGNPVD-PKIIDSIRRQIGHTKL 333 (374)
Q Consensus 263 tvieV~~~DRpGLL~~It~~L~~~~i~I~~a~i~T~g~~~~D~Fyv~d~~g~~l~-~~~~~~l~~~l~~~~~ 333 (374)
|+|||.|+|||||||+|+++|.++|++|++|+|+|+|+++.|+|||++.+|.|+. ++++++|+++|.+++.
T Consensus 2 TvveV~~~DRpGLL~~i~~~l~~~~l~I~~A~I~T~gera~D~FyV~d~~g~kl~~~~~~~~l~~~L~~al~ 73 (75)
T cd04897 2 SVVTVQCRDRPKLLFDVVCTLTDMDYVVFHATIDTDGDDAHQEYYIRHKDGRTLSTEGERQRVIKCLEAAIE 73 (75)
T ss_pred EEEEEEeCCcCcHHHHHHHHHHhCCeEEEEEEEeecCceEEEEEEEEcCCCCccCCHHHHHHHHHHHHHHHh
Confidence 7999999999999999999999999999999999999999999999999999997 4688999999998764
No 20
>cd04895 ACT_ACR_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.82 E-value=6.9e-20 Score=139.24 Aligned_cols=69 Identities=28% Similarity=0.434 Sum_probs=65.1
Q ss_pred ceEEEEEeCCCccHHHHHHHHHHhCCceEEEEEEeecCCeeeeEEEEEcCCCCCCC-hhHHHHHHHHHhh
Q 017268 262 GLELELCTEDRVGLLSDITRIFRENSLSIKRAEISTIGGKVKDTFYVTDVTGNPVD-PKIIDSIRRQIGH 330 (374)
Q Consensus 262 ~tvieV~~~DRpGLL~~It~~L~~~~i~I~~a~i~T~g~~~~D~Fyv~d~~g~~l~-~~~~~~l~~~l~~ 330 (374)
.|+|||.++|||||||+|+++|+++|++|++|+|+|+|++++|+|||+|.+|.|++ ++.+++|+++|..
T Consensus 1 ~Tviev~a~DRpGLL~~i~~~l~~~gl~I~~AkIsT~Gerv~DvFyV~d~~g~kl~d~~~~~~l~~~L~~ 70 (72)
T cd04895 1 CTLVKVDSARKPGILLEAVQVLTDLDLCITKAYISSDGGWFMDVFHVTDQLGNKLTDDSLIAYIEKSLGT 70 (72)
T ss_pred CEEEEEEECCcCCHHHHHHHHHHHCCcEEEEEEEeecCCeEEEEEEEECCCCCCCCCHHHHHHHHHHhcc
Confidence 37999999999999999999999999999999999999999999999999999996 5788999998865
No 21
>cd04896 ACT_ACR-like_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.80 E-value=3.6e-19 Score=136.26 Aligned_cols=71 Identities=24% Similarity=0.322 Sum_probs=66.3
Q ss_pred eEEEEEeCCCccHHHHHHHHHHhCCceEEEEEEe--ecCCeeeeEEEEEcCCCCCCC-hhHHHHHHHHHhhhhcc
Q 017268 263 LELELCTEDRVGLLSDITRIFRENSLSIKRAEIS--TIGGKVKDTFYVTDVTGNPVD-PKIIDSIRRQIGHTKLQ 334 (374)
Q Consensus 263 tvieV~~~DRpGLL~~It~~L~~~~i~I~~a~i~--T~g~~~~D~Fyv~d~~g~~l~-~~~~~~l~~~l~~~~~~ 334 (374)
|+|+|.|.|||||||+|+++|+++|++|++|||+ |+|++++|+||| +.+|.|++ +++++.|+++|.++++.
T Consensus 1 Tvlev~a~DRpGLL~~i~~~l~~~~l~i~~AkI~~~T~Gerv~D~Fyv-~~~g~kl~d~~~~~~L~~~L~~~l~~ 74 (75)
T cd04896 1 TLLQIRCVDQKGLLYDILRTSKDCNIQISYGRFSSKVKGYREVDLFIV-QSDGKKIMDPKKQAALCARLREEMVC 74 (75)
T ss_pred CEEEEEeCCcccHHHHHHHHHHHCCeEEEEEEEecCcccCEEEEEEEE-eCCCCccCCHHHHHHHHHHHHHHhcC
Confidence 6899999999999999999999999999999999 999999999999 88898986 57889999999998764
No 22
>cd04897 ACT_ACR_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.75 E-value=1.1e-17 Score=128.06 Aligned_cols=75 Identities=65% Similarity=1.131 Sum_probs=71.7
Q ss_pred EEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHHhhc
Q 017268 184 YTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRHVDGLPISSEAERERVIQCLEAAIERR 258 (374)
Q Consensus 184 ~t~v~V~~~DrpGLl~~i~~~l~~~glnI~~A~i~T~~g~~~dvF~V~~~~g~~~~~~~~~~~L~~~L~~~L~~r 258 (374)
+|+|+|.|+||||||++|+++|+++|++|..|+|.|.|+++.|+|||++.+|.++.++.+.++|+++|..+|.+|
T Consensus 1 ~TvveV~~~DRpGLL~~i~~~l~~~~l~I~~A~I~T~gera~D~FyV~d~~g~kl~~~~~~~~l~~~L~~al~~~ 75 (75)
T cd04897 1 YSVVTVQCRDRPKLLFDVVCTLTDMDYVVFHATIDTDGDDAHQEYYIRHKDGRTLSTEGERQRVIKCLEAAIERR 75 (75)
T ss_pred CEEEEEEeCCcCcHHHHHHHHHHhCCeEEEEEEEeecCceEEEEEEEEcCCCCccCCHHHHHHHHHHHHHHHhcC
Confidence 478999999999999999999999999999999999999999999999999999999999999999999988654
No 23
>cd04895 ACT_ACR_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.70 E-value=1.6e-16 Score=120.78 Aligned_cols=69 Identities=16% Similarity=0.270 Sum_probs=65.6
Q ss_pred EEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEEeCCCCCCCCHHHHHHHHHHHH
Q 017268 184 YTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRHVDGLPISSEAERERVIQCLE 252 (374)
Q Consensus 184 ~t~v~V~~~DrpGLl~~i~~~l~~~glnI~~A~i~T~~g~~~dvF~V~~~~g~~~~~~~~~~~L~~~L~ 252 (374)
+|+|+|.++||||||++|+++|+++|++|+.|+|.|.|+++.|+|||++.+|.++.+++++++|+++|.
T Consensus 1 ~Tviev~a~DRpGLL~~i~~~l~~~gl~I~~AkIsT~Gerv~DvFyV~d~~g~kl~d~~~~~~l~~~L~ 69 (72)
T cd04895 1 CTLVKVDSARKPGILLEAVQVLTDLDLCITKAYISSDGGWFMDVFHVTDQLGNKLTDDSLIAYIEKSLG 69 (72)
T ss_pred CEEEEEEECCcCCHHHHHHHHHHHCCcEEEEEEEeecCCeEEEEEEEECCCCCCCCCHHHHHHHHHHhc
Confidence 478999999999999999999999999999999999999999999999999999998888899998874
No 24
>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional
Probab=99.69 E-value=3.3e-16 Score=141.21 Aligned_cols=140 Identities=14% Similarity=0.121 Sum_probs=109.6
Q ss_pred CCEEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHHh-----
Q 017268 182 KDYTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRHVDGLPISSEAERERVIQCLEAAIE----- 256 (374)
Q Consensus 182 ~~~t~v~V~~~DrpGLl~~i~~~l~~~glnI~~A~i~T~~g~~~dvF~V~~~~g~~~~~~~~~~~L~~~L~~~L~----- 256 (374)
..+.+|++.++|||||++.++++++++||||.+.++...+|.+.-++.|+.++ ...++|+..|...-.
T Consensus 6 ~~~lviTviG~DrpGIVa~vs~~l~~~g~NI~ds~~t~lgg~Fa~i~lvs~~~-------~~~~~le~~L~~l~~~~~L~ 78 (190)
T PRK11589 6 QHYLVITALGADRPGIVNTITRHVSSCGCNIEDSRLAMLGEEFTFIMLLSGSW-------NAITLIESTLPLKGAELDLL 78 (190)
T ss_pred ccEEEEEEEcCCCChHHHHHHHHHHHcCCCeeehhhHhhCCceEEEEEEeCCh-------hHHHHHHHHHHhhhhhcCeE
Confidence 36789999999999999999999999999999999999999999889886543 356677777654321
Q ss_pred ---hcc--------CCceEEEEEeCCCccHHHHHHHHHHhCCceEEEEEEeecCC--eeeeEEEEEcCCCCCCChhHHHH
Q 017268 257 ---RRA--------SEGLELELCTEDRVGLLSDITRIFRENSLSIKRAEISTIGG--KVKDTFYVTDVTGNPVDPKIIDS 323 (374)
Q Consensus 257 ---~r~--------~~~tvieV~~~DRpGLL~~It~~L~~~~i~I~~a~i~T~g~--~~~D~Fyv~d~~g~~l~~~~~~~ 323 (374)
++. +.++.++|.+.|||||+++||++|+++|+||..++..|++. ...+.|.+.-.-.-|-+ ..++.
T Consensus 79 i~v~~~~~~~~~~~~~~~~v~v~G~DrPGIV~~vT~~la~~~iNI~~L~T~~~~a~~~~~~lf~~~~~v~lP~~-~~~~~ 157 (190)
T PRK11589 79 IVMKRTTARPRPAMPATVWVQVEVADSPHLIERFTALFDSHHMNIAELVSRTQPAEGERPAQLHIQITAHSPAS-QDAAN 157 (190)
T ss_pred EEEEeccccccccCCceEEEEEEECCCCCHHHHHHHHHHHcCCChhheEEeeecCCCCCcccEEEEEEEEcCCC-CCHHH
Confidence 121 11489999999999999999999999999999999999985 67777877655444432 22344
Q ss_pred HHHHHh
Q 017268 324 IRRQIG 329 (374)
Q Consensus 324 l~~~l~ 329 (374)
|+++|+
T Consensus 158 L~~~l~ 163 (190)
T PRK11589 158 IEQAFK 163 (190)
T ss_pred HHHHHH
Confidence 444444
No 25
>cd04925 ACT_ACR_2 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.65 E-value=1.2e-15 Score=117.14 Aligned_cols=73 Identities=66% Similarity=0.997 Sum_probs=66.9
Q ss_pred EEEEEEeCCccchHHHHHHHHHhcCCeEEEEEEEeeCCeeEEEEEEecCCC-CCCCCCHHHHHHHHHHHHHHHcC
Q 017268 50 TSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHST-GYAIKDPKRLSTIKELLFNVLRG 123 (374)
Q Consensus 50 ~~I~I~~~DrpGL~a~I~~vL~~~glnI~~A~I~T~~~~~~dvf~V~~~~~-g~~~~~~~~~~~l~~~L~~~L~~ 123 (374)
|.|+|+++||||||++|+++|+.+||||++|+|+|.++.+.|+|+|+++ + |.++.+++++++|++.|.++|.|
T Consensus 1 t~~~v~~~Dr~gLl~~i~~~l~~~~lnI~~A~i~t~~~~~~d~f~V~d~-~~~~~~~~~~~~~~i~~~L~~~l~g 74 (74)
T cd04925 1 TAIELTGTDRPGLLSEVFAVLADLHCNVVEARAWTHNGRLACVIYVRDE-ETGAPIDDPIRLASIEDRLDNVLRG 74 (74)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHCCCcEEEEEEEEECCEEEEEEEEEcC-cCCCCCCCHHHHHHHHHHHHHHhcC
Confidence 5799999999999999999999999999999999999999999999984 5 67777888999999999998864
No 26
>cd04896 ACT_ACR-like_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.63 E-value=2.8e-15 Score=114.79 Aligned_cols=71 Identities=21% Similarity=0.305 Sum_probs=66.5
Q ss_pred EEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEE--ecCCeEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHHh
Q 017268 185 TVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVN--TGRTEAYQEFYIRHVDGLPISSEAERERVIQCLEAAIE 256 (374)
Q Consensus 185 t~v~V~~~DrpGLl~~i~~~l~~~glnI~~A~i~--T~~g~~~dvF~V~~~~g~~~~~~~~~~~L~~~L~~~L~ 256 (374)
|+++|.++|||||||+|+++|+++|++|+.|+|. |.|++++|+||| +.+|.++.++++.+.|+++|.++|.
T Consensus 1 Tvlev~a~DRpGLL~~i~~~l~~~~l~i~~AkI~~~T~Gerv~D~Fyv-~~~g~kl~d~~~~~~L~~~L~~~l~ 73 (75)
T cd04896 1 TLLQIRCVDQKGLLYDILRTSKDCNIQISYGRFSSKVKGYREVDLFIV-QSDGKKIMDPKKQAALCARLREEMV 73 (75)
T ss_pred CEEEEEeCCcccHHHHHHHHHHHCCeEEEEEEEecCcccCEEEEEEEE-eCCCCccCCHHHHHHHHHHHHHHhc
Confidence 5799999999999999999999999999999999 999999999999 8888889888899999999988763
No 27
>cd04900 ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD is the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.63 E-value=3.2e-15 Score=114.45 Aligned_cols=71 Identities=34% Similarity=0.517 Sum_probs=63.8
Q ss_pred EEEEEEeCCccchHHHHHHHHHhcCCeEEEEEEEee-CCeeEEEEEEecCCCCCCCCCHHHHHHHHHHHHHHH
Q 017268 50 TSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTH-NDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVL 121 (374)
Q Consensus 50 ~~I~I~~~DrpGL~a~I~~vL~~~glnI~~A~I~T~-~~~~~dvf~V~~~~~g~~~~~~~~~~~l~~~L~~~L 121 (374)
++|+|+++||||||++++++|+.+|+||++|+|+|+ ++.+.|+|+|+++ +|.++.+++++++|++.|.++|
T Consensus 2 ~~i~v~~~Dr~gLl~~i~~~l~~~~l~I~~A~i~T~~~~~v~D~F~v~~~-~~~~~~~~~~~~~l~~~L~~~l 73 (73)
T cd04900 2 TEVFIYTPDRPGLFARIAGALDQLGLNILDARIFTTRDGYALDTFVVLDP-DGEPIGERERLARIREALEDAL 73 (73)
T ss_pred EEEEEEecCCCCHHHHHHHHHHHCCCCeEEeEEEEeCCCeEEEEEEEECC-CCCCCChHHHHHHHHHHHHhhC
Confidence 689999999999999999999999999999999998 5778899999984 7777767789999999998754
No 28
>cd04925 ACT_ACR_2 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.60 E-value=7.8e-15 Score=112.72 Aligned_cols=72 Identities=24% Similarity=0.377 Sum_probs=66.9
Q ss_pred EEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEEeCC-CCCCCCHHHHHHHHHHHHHHHh
Q 017268 185 TVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRHVD-GLPISSEAERERVIQCLEAAIE 256 (374)
Q Consensus 185 t~v~V~~~DrpGLl~~i~~~l~~~glnI~~A~i~T~~g~~~dvF~V~~~~-g~~~~~~~~~~~L~~~L~~~L~ 256 (374)
|+|+|+++||||||++|+++|+++|+||++|+++|.+|++.|+|+|.+++ |.++.++++++++++.|.++|.
T Consensus 1 t~~~v~~~Dr~gLl~~i~~~l~~~~lnI~~A~i~t~~~~~~d~f~V~d~~~~~~~~~~~~~~~i~~~L~~~l~ 73 (74)
T cd04925 1 TAIELTGTDRPGLLSEVFAVLADLHCNVVEARAWTHNGRLACVIYVRDEETGAPIDDPIRLASIEDRLDNVLR 73 (74)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHCCCcEEEEEEEEECCEEEEEEEEEcCcCCCCCCCHHHHHHHHHHHHHHhc
Confidence 57999999999999999999999999999999999999999999999987 8877777899999999988763
No 29
>cd04900 ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD is the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.59 E-value=1e-14 Score=111.71 Aligned_cols=71 Identities=25% Similarity=0.373 Sum_probs=65.4
Q ss_pred EEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEec-CCeEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHH
Q 017268 185 TVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTG-RTEAYQEFYIRHVDGLPISSEAERERVIQCLEAAI 255 (374)
Q Consensus 185 t~v~V~~~DrpGLl~~i~~~l~~~glnI~~A~i~T~-~g~~~dvF~V~~~~g~~~~~~~~~~~L~~~L~~~L 255 (374)
+.|+|+++||||||++++++|+.+|+||++|+|.|. +|+++|+|+|.+++|.++.++++++++++.|.++|
T Consensus 2 ~~i~v~~~Dr~gLl~~i~~~l~~~~l~I~~A~i~T~~~~~v~D~F~v~~~~~~~~~~~~~~~~l~~~L~~~l 73 (73)
T cd04900 2 TEVFIYTPDRPGLFARIAGALDQLGLNILDARIFTTRDGYALDTFVVLDPDGEPIGERERLARIREALEDAL 73 (73)
T ss_pred EEEEEEecCCCCHHHHHHHHHHHCCCCeEEeEEEEeCCCeEEEEEEEECCCCCCCChHHHHHHHHHHHHhhC
Confidence 679999999999999999999999999999999987 69999999999998988877789999999987653
No 30
>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional
Probab=99.57 E-value=1.3e-13 Score=124.43 Aligned_cols=154 Identities=13% Similarity=0.167 Sum_probs=110.5
Q ss_pred CCCeEEEEEEeCCccchHHHHHHHHHhcCCeEEEEEEEeeCCeeEEEEEEecCCCCCCCCCHHHHHHHHHHHHHHHcCCC
Q 017268 46 TEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLRGYD 125 (374)
Q Consensus 46 ~~~~~~I~I~~~DrpGL~a~I~~vL~~~glnI~~A~I~T~~~~~~dvf~V~~~~~g~~~~~~~~~~~l~~~L~~~L~~~~ 125 (374)
...+.+|+++|+||||+.+.++++|+++||||.+.+...+++.+..++.|+. .+ ..++.|+..|.. +....
T Consensus 5 m~~~lviTviG~DrpGIVa~vs~~l~~~g~NI~ds~~t~lgg~Fa~i~lvs~----~~----~~~~~le~~L~~-l~~~~ 75 (190)
T PRK11589 5 SQHYLVITALGADRPGIVNTITRHVSSCGCNIEDSRLAMLGEEFTFIMLLSG----SW----NAITLIESTLPL-KGAEL 75 (190)
T ss_pred cccEEEEEEEcCCCChHHHHHHHHHHHcCCCeeehhhHhhCCceEEEEEEeC----Ch----hHHHHHHHHHHh-hhhhc
Confidence 5678999999999999999999999999999999999999999999998853 21 356788888876 33222
Q ss_pred cccccccccCCCCCCcchhhhhhhcccCchhhhhhhhccccCCCCCCCEEEEEcCCCCEEEEEEEeCCCcchHHHHHHHH
Q 017268 126 DFRKAKTSLSPPGIMNRERRLHQIMFDDRDYERVEKAVGRVEDKSSRPQVTVLNIEKDYTVITMRSKDRPKLLFDIVCTL 205 (374)
Q Consensus 126 ~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~t~v~V~~~DrpGLl~~i~~~l 205 (374)
++. + .. ++... . .+ ......+.++|++.|||||+++++++|
T Consensus 76 ~L~-----i------~v-~~~~~-----~----------------~~------~~~~~~~~v~v~G~DrPGIV~~vT~~l 116 (190)
T PRK11589 76 DLL-----I------VM-KRTTA-----R----------------PR------PAMPATVWVQVEVADSPHLIERFTALF 116 (190)
T ss_pred CeE-----E------EE-Eeccc-----c----------------cc------ccCCceEEEEEEECCCCCHHHHHHHHH
Confidence 211 1 00 01000 0 00 001123679999999999999999999
Q ss_pred HhCCceEEEEEEEecCC------eEEEEEEEEeCCCCCCCCHHHHHHHHHHHHH
Q 017268 206 TDMQYVVFHGMVNTGRT------EAYQEFYIRHVDGLPISSEAERERVIQCLEA 253 (374)
Q Consensus 206 ~~~glnI~~A~i~T~~g------~~~dvF~V~~~~g~~~~~~~~~~~L~~~L~~ 253 (374)
+++|+||.+.+..|.+. .+.-.|.|.-|.+.. ...|++.|+.
T Consensus 117 a~~~iNI~~L~T~~~~a~~~~~~lf~~~~~v~lP~~~~------~~~L~~~l~~ 164 (190)
T PRK11589 117 DSHHMNIAELVSRTQPAEGERPAQLHIQITAHSPASQD------AANIEQAFKA 164 (190)
T ss_pred HHcCCChhheEEeeecCCCCCcccEEEEEEEEcCCCCC------HHHHHHHHHH
Confidence 99999999999888652 455566676665532 3455555544
No 31
>cd04927 ACT_ACR-like_2 Second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.56 E-value=3e-14 Score=110.08 Aligned_cols=69 Identities=32% Similarity=0.424 Sum_probs=62.3
Q ss_pred EEEEEeCCCccHHHHHHHHHHhCCceEEEEEEee-cCCeeeeEEEEEcCCCCCCChhHHHHHHHHHhhhh
Q 017268 264 ELELCTEDRVGLLSDITRIFRENSLSIKRAEIST-IGGKVKDTFYVTDVTGNPVDPKIIDSIRRQIGHTK 332 (374)
Q Consensus 264 vieV~~~DRpGLL~~It~~L~~~~i~I~~a~i~T-~g~~~~D~Fyv~d~~g~~l~~~~~~~l~~~l~~~~ 332 (374)
+++|.++||||||++|+++|+++|++|.+|+|.| .++++.|+|||+|..|...++++.++++++|.+++
T Consensus 2 ~~ei~~~Dr~gLfa~i~~~l~~~~l~I~~A~I~Tt~~~~v~D~F~V~d~~~~~~~~~~~~~l~~~L~~~L 71 (76)
T cd04927 2 LLKLFCSDRKGLLHDVTEVLYELELTIERVKVSTTPDGRVLDLFFITDARELLHTKKRREETYDYLRAVL 71 (76)
T ss_pred EEEEEECCCCCHHHHHHHHHHHCCCeEEEEEEEECCCCEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHH
Confidence 6899999999999999999999999999999997 89999999999999777444578888999988765
No 32
>cd04927 ACT_ACR-like_2 Second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.55 E-value=5.7e-14 Score=108.48 Aligned_cols=70 Identities=21% Similarity=0.352 Sum_probs=63.4
Q ss_pred EEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEe-cCCeEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHHh
Q 017268 186 VITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNT-GRTEAYQEFYIRHVDGLPISSEAERERVIQCLEAAIE 256 (374)
Q Consensus 186 ~v~V~~~DrpGLl~~i~~~l~~~glnI~~A~i~T-~~g~~~dvF~V~~~~g~~~~~~~~~~~L~~~L~~~L~ 256 (374)
.++|+++||||||++++++|+.+|+||++|+|+| .+|+++|+|+|.++.+. ..++++++++++.|.++|.
T Consensus 2 ~~ei~~~Dr~gLfa~i~~~l~~~~l~I~~A~I~Tt~~~~v~D~F~V~d~~~~-~~~~~~~~~l~~~L~~~L~ 72 (76)
T cd04927 2 LLKLFCSDRKGLLHDVTEVLYELELTIERVKVSTTPDGRVLDLFFITDAREL-LHTKKRREETYDYLRAVLG 72 (76)
T ss_pred EEEEEECCCCCHHHHHHHHHHHCCCeEEEEEEEECCCCEEEEEEEEeCCCCC-CCCHHHHHHHHHHHHHHHc
Confidence 5899999999999999999999999999999997 79999999999998776 4556799999999988773
No 33
>COG2716 GcvR Glycine cleavage system regulatory protein [Amino acid transport and metabolism]
Probab=99.49 E-value=1.4e-13 Score=119.46 Aligned_cols=141 Identities=17% Similarity=0.174 Sum_probs=113.7
Q ss_pred CCEEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHHh-----
Q 017268 182 KDYTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRHVDGLPISSEAERERVIQCLEAAIE----- 256 (374)
Q Consensus 182 ~~~t~v~V~~~DrpGLl~~i~~~l~~~glnI~~A~i~T~~g~~~dvF~V~~~~g~~~~~~~~~~~L~~~L~~~L~----- 256 (374)
.++.+|++++.||||+...+++..+++||||.++++...|+.+.-+..|+.+++ ...+|+..|...=+
T Consensus 3 ~~~LvItavg~d~pgl~~~lar~v~s~Gcn~leSRla~~g~~~a~i~lisgs~d-------av~~le~~l~~l~~~~~L~ 75 (176)
T COG2716 3 EHYLVITAVGADRPGLVNTLARAVASSGCNWLESRLAMLGEEFAGIMLISGSWD-------AVTLLEATLPLLGAELDLL 75 (176)
T ss_pred ccEEEEEEecCCCcHHHHHHHHHHHhcCCcchHHHHHHhhcceeEEEEEeeCHH-------HHHHHHHHhhcccccCCeE
Confidence 357899999999999999999999999999999999999999998888987643 56677777653211
Q ss_pred ---hcc--------CCceEEEEEeCCCccHHHHHHHHHHhCCceEEEEEEeecC--CeeeeEEEEEcCCCCCCChhHHHH
Q 017268 257 ---RRA--------SEGLELELCTEDRVGLLSDITRIFRENSLSIKRAEISTIG--GKVKDTFYVTDVTGNPVDPKIIDS 323 (374)
Q Consensus 257 ---~r~--------~~~tvieV~~~DRpGLL~~It~~L~~~~i~I~~a~i~T~g--~~~~D~Fyv~d~~g~~l~~~~~~~ 323 (374)
.|. +.++.++|.+.|||||+.++|++|.++|++|+++...|+- +.....|+.+-.-+.|.+ ..+..
T Consensus 76 v~m~rt~~~~~~a~~~~v~v~v~a~DrpgIv~~~T~lf~~~~inie~L~~~~~~a~~s~~~lfha~it~~lPa~-~~i~~ 154 (176)
T COG2716 76 VVMKRTGAHPTPANPAPVWVYVDANDRPGIVEEFTALFDGHGINIENLVSRTYPAPGSSAPLFHAQITARLPAN-LSISA 154 (176)
T ss_pred EEEeecCCCccCCCCceEEEEEEecCCccHHHHHHHHHHhcCCchhhceeeeeecCCCCccceehhhhccCCCc-CcHHH
Confidence 111 1258999999999999999999999999999999999985 446778998777777775 34455
Q ss_pred HHHHHhh
Q 017268 324 IRRQIGH 330 (374)
Q Consensus 324 l~~~l~~ 330 (374)
|+++|+.
T Consensus 155 l~~~f~a 161 (176)
T COG2716 155 LRDAFEA 161 (176)
T ss_pred HHHHHHH
Confidence 5555543
No 34
>cd04928 ACT_TyrKc Uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. This CD includes a novel, yet uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.41 E-value=1.5e-12 Score=97.77 Aligned_cols=65 Identities=23% Similarity=0.388 Sum_probs=53.8
Q ss_pred EEEEEEeCCccchHHHHHHHHHhcCCeEEEEEEEeeC-CeeEEEEEEecCCCCCCCCCHHHHHHHHHHHHHHH
Q 017268 50 TSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHN-DRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVL 121 (374)
Q Consensus 50 ~~I~I~~~DrpGL~a~I~~vL~~~glnI~~A~I~T~~-~~~~dvf~V~~~~~g~~~~~~~~~~~l~~~L~~~L 121 (374)
.+|+|+++||||||++|+++|+.+|+||++|+|+|+. |.+.|+|+|.++ +|. ++ +.+++.|.++|
T Consensus 2 ~eI~V~~~Dr~gLFa~iag~L~~~~LnI~~A~i~tt~dG~~LDtF~V~d~-~~~---~~---~~~~~~~~~~~ 67 (68)
T cd04928 2 HEITFAAGDKPKLLSQLSSLLGDLGLNIAEAHAFSTDDGLALDIFVVTGW-KRG---ET---AALGHALQKEI 67 (68)
T ss_pred EEEEEEECCCcchHHHHHHHHHHCCCceEEEEEEEcCCCeEEEEEEEecC-Ccc---ch---HHHHHHHHHhh
Confidence 5899999999999999999999999999999999975 555699999984 554 21 45677776655
No 35
>PRK00227 glnD PII uridylyl-transferase; Provisional
Probab=99.36 E-value=4.9e-12 Score=133.94 Aligned_cols=137 Identities=15% Similarity=0.153 Sum_probs=108.7
Q ss_pred EEEEEEe-CCCcchHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHHhh---ccC
Q 017268 185 TVITMRS-KDRPKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRHVDGLPISSEAERERVIQCLEAAIER---RAS 260 (374)
Q Consensus 185 t~v~V~~-~DrpGLl~~i~~~l~~~glnI~~A~i~T~~g~~~dvF~V~~~~g~~~~~~~~~~~L~~~L~~~L~~---r~~ 260 (374)
-.++|.. +|++|++.+++++|+.+|++|++|++.+ +|.++..|.|....|.+.++....+.++..+...+.- -.+
T Consensus 547 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~a~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 625 (693)
T PRK00227 547 GFFTVIWHGDYPRELVRVLALIAAKGWNILSARMVA-NGPWSAEFDVRANGPQDFDPQEFLQAYKSGVYSELPDPAPGIT 625 (693)
T ss_pred CeEEEEecCCcccHHHHHHHHHHhcCceeeEeEEec-CCceEEEEEEecCCCCCCChHHHHHHHHHhhcCCCCcccCCCC
Confidence 4678887 9999999999999999999999999999 8888999999998888776543334444433322211 012
Q ss_pred C----ceEEEEEeCCCccHHHHHHHHHHhCCceEEEEEEeecCCeeeeEEEEEcCCCCCCChhHHHHHHHHHhhhhc
Q 017268 261 E----GLELELCTEDRVGLLSDITRIFRENSLSIKRAEISTIGGKVKDTFYVTDVTGNPVDPKIIDSIRRQIGHTKL 333 (374)
Q Consensus 261 ~----~tvieV~~~DRpGLL~~It~~L~~~~i~I~~a~i~T~g~~~~D~Fyv~d~~g~~l~~~~~~~l~~~l~~~~~ 333 (374)
+ .+++||++.||||+|++|+++|. +|.+|+++|.|..++|+||+.. | .....++.++..+++
T Consensus 626 ~~~~~~~~~e~r~~dr~g~l~~~~~~l~----~~~~~~~~~~g~~~~~~~~~~~--~-----~~r~~~~~~~~~~~~ 691 (693)
T PRK00227 626 ATFWHGNILEVRTEDRRGALGALLGVLP----DLLWITASTPGATMIVQAALKP--G-----FDRATVERDVTRVLA 691 (693)
T ss_pred ceEeeCcEEEEEeCccccHHHHHHHHhh----hhhhHhhcCCCcceEEEEEecC--c-----ccHHHHHHHHHHHHh
Confidence 2 47999999999999999999999 8999999999999999999961 1 235666777766554
No 36
>cd04926 ACT_ACR_4 C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.36 E-value=6.1e-12 Score=96.04 Aligned_cols=68 Identities=34% Similarity=0.471 Sum_probs=59.8
Q ss_pred eEEEEEEeCCccchHHHHHHHHHhcCCeEEEEEEEeeCCeeEEEEEEecCCCCCCCCCHHHHHHHHHHHH
Q 017268 49 HTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLF 118 (374)
Q Consensus 49 ~~~I~I~~~DrpGL~a~I~~vL~~~glnI~~A~I~T~~~~~~dvf~V~~~~~g~~~~~~~~~~~l~~~L~ 118 (374)
+++|+|+++|+||+|++|+++|+.+|+||++|+++|.++.+.++|+|+++ ++.++ +++++++|++.|-
T Consensus 1 gtri~V~~~D~~Gll~~i~~~l~~~~lnI~sa~i~t~~~~~~d~f~v~~~-~~~~~-~~~~~~~l~~~l~ 68 (72)
T cd04926 1 GVRLELRTEDRVGLLSDVTRVFRENGLTVTRAEISTQGDMAVNVFYVTDA-NGNPV-DPKTIEAVRQEIG 68 (72)
T ss_pred CeEEEEEECCccCHHHHHHHHHHHCCcEEEEEEEecCCCeEEEEEEEECC-CCCcC-CHHHHHHHHHHhc
Confidence 36899999999999999999999999999999999988877899999984 67766 6678888877764
No 37
>cd04928 ACT_TyrKc Uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. This CD includes a novel, yet uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.33 E-value=1.2e-11 Score=92.86 Aligned_cols=65 Identities=22% Similarity=0.226 Sum_probs=55.2
Q ss_pred EEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEe-cCCeEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHH
Q 017268 185 TVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNT-GRTEAYQEFYIRHVDGLPISSEAERERVIQCLEAAI 255 (374)
Q Consensus 185 t~v~V~~~DrpGLl~~i~~~l~~~glnI~~A~i~T-~~g~~~dvF~V~~~~g~~~~~~~~~~~L~~~L~~~L 255 (374)
..|.|+++||||||++++++|+.+|+||++|+|+| .+|+++|+|+|.+.+|. ....|+++|+++|
T Consensus 2 ~eI~V~~~Dr~gLFa~iag~L~~~~LnI~~A~i~tt~dG~~LDtF~V~d~~~~------~~~~~~~~~~~~~ 67 (68)
T cd04928 2 HEITFAAGDKPKLLSQLSSLLGDLGLNIAEAHAFSTDDGLALDIFVVTGWKRG------ETAALGHALQKEI 67 (68)
T ss_pred EEEEEEECCCcchHHHHHHHHHHCCCceEEEEEEEcCCCeEEEEEEEecCCcc------chHHHHHHHHHhh
Confidence 46899999999999999999999999999999997 57999999999998775 2345566665544
No 38
>COG2716 GcvR Glycine cleavage system regulatory protein [Amino acid transport and metabolism]
Probab=99.32 E-value=1e-11 Score=108.02 Aligned_cols=158 Identities=16% Similarity=0.201 Sum_probs=111.7
Q ss_pred CCCeEEEEEEeCCccchHHHHHHHHHhcCCeEEEEEEEeeCCeeEEEEEEecCCCCCCCCCHHHHHHHHHHHHHHHcCCC
Q 017268 46 TEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLRGYD 125 (374)
Q Consensus 46 ~~~~~~I~I~~~DrpGL~a~I~~vL~~~glnI~~A~I~T~~~~~~dvf~V~~~~~g~~~~~~~~~~~l~~~L~~~L~~~~ 125 (374)
.++++.|++++.||||+...||++..++||||+++++.+.|+.+..+..|+. . | +...+|++.|.. +..+.
T Consensus 2 ~~~~LvItavg~d~pgl~~~lar~v~s~Gcn~leSRla~~g~~~a~i~lisg----s-~---dav~~le~~l~~-l~~~~ 72 (176)
T COG2716 2 MEHYLVITAVGADRPGLVNTLARAVASSGCNWLESRLAMLGEEFAGIMLISG----S-W---DAVTLLEATLPL-LGAEL 72 (176)
T ss_pred CccEEEEEEecCCCcHHHHHHHHHHHhcCCcchHHHHHHhhcceeEEEEEee----C-H---HHHHHHHHHhhc-ccccC
Confidence 5678999999999999999999999999999999999999999999998864 2 2 456788888876 44444
Q ss_pred cccccccccCCCCCCcchhhhhhhcccCchhhhhhhhccccCCCCCCCEEEEEcCCCCEEEEEEEeCCCcchHHHHHHHH
Q 017268 126 DFRKAKTSLSPPGIMNRERRLHQIMFDDRDYERVEKAVGRVEDKSSRPQVTVLNIEKDYTVITMRSKDRPKLLFDIVCTL 205 (374)
Q Consensus 126 ~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~t~v~V~~~DrpGLl~~i~~~l 205 (374)
++. +. +++...+ ..+ .....+.+.|.+.|||||+.++|..|
T Consensus 73 ~L~-----v~---m~rt~~~-------------------------~~~------a~~~~v~v~v~a~DrpgIv~~~T~lf 113 (176)
T COG2716 73 DLL-----VV---MKRTGAH-------------------------PTP------ANPAPVWVYVDANDRPGIVEEFTALF 113 (176)
T ss_pred CeE-----EE---EeecCCC-------------------------ccC------CCCceEEEEEEecCCccHHHHHHHHH
Confidence 421 10 0010000 000 12345679999999999999999999
Q ss_pred HhCCceEEEEEEEec--CCeEEEEEEEEeCCCCCCCCHHHHHHHHHHHHH
Q 017268 206 TDMQYVVFHGMVNTG--RTEAYQEFYIRHVDGLPISSEAERERVIQCLEA 253 (374)
Q Consensus 206 ~~~glnI~~A~i~T~--~g~~~dvF~V~~~~g~~~~~~~~~~~L~~~L~~ 253 (374)
..+|+||.+....|. .+.-.-.|++.-.-.-+..- ....|++.++.
T Consensus 114 ~~~~inie~L~~~~~~a~~s~~~lfha~it~~lPa~~--~i~~l~~~f~a 161 (176)
T COG2716 114 DGHGINIENLVSRTYPAPGSSAPLFHAQITARLPANL--SISALRDAFEA 161 (176)
T ss_pred HhcCCchhhceeeeeecCCCCccceehhhhccCCCcC--cHHHHHHHHHH
Confidence 999999998888774 34444456655433333221 34455555544
No 39
>cd04926 ACT_ACR_4 C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.31 E-value=2.1e-11 Score=93.07 Aligned_cols=67 Identities=24% Similarity=0.349 Sum_probs=61.0
Q ss_pred EEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEEeCCCCCCCCHHHHHHHHHHHH
Q 017268 185 TVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRHVDGLPISSEAERERVIQCLE 252 (374)
Q Consensus 185 t~v~V~~~DrpGLl~~i~~~l~~~glnI~~A~i~T~~g~~~dvF~V~~~~g~~~~~~~~~~~L~~~L~ 252 (374)
+.++|.++|+||+|++++++|+++|+||.+|.++|.++++.|+|+|.++++.+. ++++++++++.|-
T Consensus 2 tri~V~~~D~~Gll~~i~~~l~~~~lnI~sa~i~t~~~~~~d~f~v~~~~~~~~-~~~~~~~l~~~l~ 68 (72)
T cd04926 2 VRLELRTEDRVGLLSDVTRVFRENGLTVTRAEISTQGDMAVNVFYVTDANGNPV-DPKTIEAVRQEIG 68 (72)
T ss_pred eEEEEEECCccCHHHHHHHHHHHCCcEEEEEEEecCCCeEEEEEEEECCCCCcC-CHHHHHHHHHHhc
Confidence 578999999999999999999999999999999999889999999999888877 5568888888774
No 40
>cd04899 ACT_ACR-UUR-like_2 C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_ACR-UUR-like_2, includes the second of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the second and fourth ACT domains of a novel protein composed almost entirely of ACT domain repeats, the ACR protein. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.28 E-value=3.8e-11 Score=90.42 Aligned_cols=70 Identities=43% Similarity=0.750 Sum_probs=64.0
Q ss_pred eEEEEEeCCCccHHHHHHHHHHhCCceEEEEEEeecCCeeeeEEEEEcCCCCCCChhHHHHHHHHHhhhh
Q 017268 263 LELELCTEDRVGLLSDITRIFRENSLSIKRAEISTIGGKVKDTFYVTDVTGNPVDPKIIDSIRRQIGHTK 332 (374)
Q Consensus 263 tvieV~~~DRpGLL~~It~~L~~~~i~I~~a~i~T~g~~~~D~Fyv~d~~g~~l~~~~~~~l~~~l~~~~ 332 (374)
|.+.|.++||||+|++|+++|+++|++|.++++.|.++.+.|+|++++.+|.+.+.+..++|++.|.+++
T Consensus 1 ~~l~v~~~d~~gll~~i~~~l~~~~~~I~~~~~~~~~~~~~~~f~i~~~~~~~~~~~~~~~i~~~l~~~~ 70 (70)
T cd04899 1 TVLELTALDRPGLLADVTRVLAELGLNIHSAKIATLGERAEDVFYVTDADGQPLDPERQEALRAALGEAL 70 (70)
T ss_pred CEEEEEEcCCccHHHHHHHHHHHCCCeEEEEEEEecCCEEEEEEEEECCCCCcCCHHHHHHHHHHHHhhC
Confidence 5789999999999999999999999999999999998899999999999999866668888999887653
No 41
>cd04899 ACT_ACR-UUR-like_2 C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_ACR-UUR-like_2, includes the second of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the second and fourth ACT domains of a novel protein composed almost entirely of ACT domain repeats, the ACR protein. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.24 E-value=9.3e-11 Score=88.29 Aligned_cols=69 Identities=28% Similarity=0.453 Sum_probs=62.8
Q ss_pred EEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHH
Q 017268 185 TVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRHVDGLPISSEAERERVIQCLEAA 254 (374)
Q Consensus 185 t~v~V~~~DrpGLl~~i~~~l~~~glnI~~A~i~T~~g~~~dvF~V~~~~g~~~~~~~~~~~L~~~L~~~ 254 (374)
|.+.|.++|+||+|++++++|+++|+||.++++.+.++.+.|+|++.++++.+. +.++++++++.|.++
T Consensus 1 ~~l~v~~~d~~gll~~i~~~l~~~~~~I~~~~~~~~~~~~~~~f~i~~~~~~~~-~~~~~~~i~~~l~~~ 69 (70)
T cd04899 1 TVLELTALDRPGLLADVTRVLAELGLNIHSAKIATLGERAEDVFYVTDADGQPL-DPERQEALRAALGEA 69 (70)
T ss_pred CEEEEEEcCCccHHHHHHHHHHHCCCeEEEEEEEecCCEEEEEEEEECCCCCcC-CHHHHHHHHHHHHhh
Confidence 468999999999999999999999999999999998889999999999988884 456999999998765
No 42
>PRK00227 glnD PII uridylyl-transferase; Provisional
Probab=99.23 E-value=4.6e-10 Score=119.09 Aligned_cols=143 Identities=14% Similarity=0.070 Sum_probs=113.9
Q ss_pred EEEEEEe-CCccchHHHHHHHHHhcCCeEEEEEEEeeCCeeEEEEEEecCCCCCCCCCHHHHHHHHHHHHHHHcCCCccc
Q 017268 50 TSIEFTG-TDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLRGYDDFR 128 (374)
Q Consensus 50 ~~I~I~~-~DrpGL~a~I~~vL~~~glnI~~A~I~T~~~~~~dvf~V~~~~~g~~~~~~~~~~~l~~~L~~~L~~~~~~~ 128 (374)
..++|+. +|++|++++++++|+.+|++|++|++.+ +|.+...|.|.. ..|.+. ++ ..+++.+...+.++.+
T Consensus 547 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~a~~~~-~~~~~~~~~v~~-~~~~~~-~~---~~~~~~~~~~~~~~~~-- 618 (693)
T PRK00227 547 GFFTVIWHGDYPRELVRVLALIAAKGWNILSARMVA-NGPWSAEFDVRA-NGPQDF-DP---QEFLQAYKSGVYSELP-- 618 (693)
T ss_pred CeEEEEecCCcccHHHHHHHHHHhcCceeeEeEEec-CCceEEEEEEec-CCCCCC-Ch---HHHHHHHHHhhcCCCC--
Confidence 4677777 9999999999999999999999999999 888889999987 466653 54 6789999998888664
Q ss_pred ccccccCCCCCCcchhhhhhhcccCchhhhhhhhccccCCCCCCCEEEEEcCCCCEEEEEEEeCCCcchHHHHHHHHHhC
Q 017268 129 KAKTSLSPPGIMNRERRLHQIMFDDRDYERVEKAVGRVEDKSSRPQVTVLNIEKDYTVITMRSKDRPKLLFDIVCTLTDM 208 (374)
Q Consensus 129 ~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~t~v~V~~~DrpGLl~~i~~~l~~~ 208 (374)
+. . ..+|.+.|. .++++|.+.||+|+|+.++++|.
T Consensus 619 -----~~-----------~----------------------~~~~~~~~~-----~~~~e~r~~dr~g~l~~~~~~l~-- 653 (693)
T PRK00227 619 -----DP-----------A----------------------PGITATFWH-----GNILEVRTEDRRGALGALLGVLP-- 653 (693)
T ss_pred -----cc-----------c----------------------CCCCceEee-----CcEEEEEeCccccHHHHHHHHhh--
Confidence 10 0 113455553 27899999999999999999999
Q ss_pred CceEEEEEEEecCCeEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHH
Q 017268 209 QYVVFHGMVNTGRTEAYQEFYIRHVDGLPISSEAERERVIQCLEAAI 255 (374)
Q Consensus 209 glnI~~A~i~T~~g~~~dvF~V~~~~g~~~~~~~~~~~L~~~L~~~L 255 (374)
+|..|++.|.|..++|.|++... ....+++..+..+|
T Consensus 654 --~~~~~~~~~~g~~~~~~~~~~~~--------~~r~~~~~~~~~~~ 690 (693)
T PRK00227 654 --DLLWITASTPGATMIVQAALKPG--------FDRATVERDVTRVL 690 (693)
T ss_pred --hhhhHhhcCCCcceEEEEEecCc--------ccHHHHHHHHHHHH
Confidence 89999999999999999999831 12455666655544
No 43
>cd04873 ACT_UUR-ACR-like ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD. This ACT domain family, ACT_UUR_ACR-like, includes the two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the four ACT domains of a novel protein composed almost entirely of ACT domain repeats (the ACR protein) and like proteins. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. This CD also includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein and related domains, as well as, the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted t
Probab=98.95 E-value=9.1e-09 Score=76.93 Aligned_cols=68 Identities=31% Similarity=0.478 Sum_probs=60.6
Q ss_pred EEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHH
Q 017268 186 VITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRHVDGLPISSEAERERVIQCLEAA 254 (374)
Q Consensus 186 ~v~V~~~DrpGLl~~i~~~l~~~glnI~~A~i~T~~g~~~dvF~V~~~~g~~~~~~~~~~~L~~~L~~~ 254 (374)
.+.|.++|+||+|++++++|+++|++|.++.+.+.+++..++|++..+++.. .++++++++++.|...
T Consensus 2 ~l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~l~~~l~~~ 69 (70)
T cd04873 2 VVEVYAPDRPGLLADITRVLADLGLNIHDARISTTGERALDVFYVTDSDGRP-LDPERIARLEEALEDA 69 (70)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHCCCeEEEEEEeecCCEEEEEEEEECCCCCc-CCHHHHHHHHHHHHhh
Confidence 5889999999999999999999999999999999877999999999988776 4456899999988664
No 44
>cd04873 ACT_UUR-ACR-like ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD. This ACT domain family, ACT_UUR_ACR-like, includes the two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the four ACT domains of a novel protein composed almost entirely of ACT domain repeats (the ACR protein) and like proteins. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. This CD also includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein and related domains, as well as, the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted t
Probab=98.95 E-value=9.7e-09 Score=76.78 Aligned_cols=69 Identities=41% Similarity=0.678 Sum_probs=60.8
Q ss_pred eEEEEEeCCCccHHHHHHHHHHhCCceEEEEEEeecCCeeeeEEEEEcCCCCCCChhHHHHHHHHHhhh
Q 017268 263 LELELCTEDRVGLLSDITRIFRENSLSIKRAEISTIGGKVKDTFYVTDVTGNPVDPKIIDSIRRQIGHT 331 (374)
Q Consensus 263 tvieV~~~DRpGLL~~It~~L~~~~i~I~~a~i~T~g~~~~D~Fyv~d~~g~~l~~~~~~~l~~~l~~~ 331 (374)
+.+.|.++|+||+|++|+.+|+++|++|.++++.|.++...++|++.+.+|.+.++++.+.|+..|..+
T Consensus 1 ~~l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~~ 69 (70)
T cd04873 1 TVVEVYAPDRPGLLADITRVLADLGLNIHDARISTTGERALDVFYVTDSDGRPLDPERIARLEEALEDA 69 (70)
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHCCCeEEEEEEeecCCEEEEEEEEECCCCCcCCHHHHHHHHHHHHhh
Confidence 368899999999999999999999999999999998889999999999887775556778888887653
No 45
>COG4747 ACT domain-containing protein [General function prediction only]
Probab=98.79 E-value=1.8e-07 Score=76.53 Aligned_cols=114 Identities=17% Similarity=0.110 Sum_probs=88.1
Q ss_pred EEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHHhhccCCceE
Q 017268 185 TVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRHVDGLPISSEAERERVIQCLEAAIERRASEGLE 264 (374)
Q Consensus 185 t~v~V~~~DrpGLl~~i~~~l~~~glnI~~A~i~T~~g~~~dvF~V~~~~g~~~~~~~~~~~L~~~L~~~L~~r~~~~tv 264 (374)
-+|.|...++||-|+.++..|.++|+||+...|.-.++.-+-.+.|..++. . .+.|+++ .-.+...-+
T Consensus 4 KQISvFlENk~GRL~~~~~~L~eagINiRA~tiAdt~dFGIiRmvV~~~d~-------A----~~~Lee~-gF~Vr~~dV 71 (142)
T COG4747 4 KQISVFLENKPGRLASVANKLKEAGINIRAFTIADTGDFGIIRMVVDRPDE-------A----HSVLEEA-GFTVRETDV 71 (142)
T ss_pred eEEEEEecCCcchHHHHHHHHHHcCCceEEEEeccccCcceEEEEcCChHH-------H----HHHHHHC-CcEEEeeeE
Confidence 468999999999999999999999999999999988887777777765421 1 2233321 001223468
Q ss_pred EEEEeCCCccHHHHHHHHHHhCCceEEEEEEeecC-CeeeeEEEEEc
Q 017268 265 LELCTEDRVGLLSDITRIFRENSLSIKRAEISTIG-GKVKDTFYVTD 310 (374)
Q Consensus 265 ieV~~~DRpGLL~~It~~L~~~~i~I~~a~i~T~g-~~~~D~Fyv~d 310 (374)
+-|...|+||-|++|+.+|.+.++|+.++...+.. +++.-.|.+.|
T Consensus 72 laVEmeD~PG~l~~I~~vl~d~diNldYiYAFv~ek~KAlli~r~ed 118 (142)
T COG4747 72 LAVEMEDVPGGLSRIAEVLGDADINLDYIYAFVTEKQKALLIVRVED 118 (142)
T ss_pred EEEEecCCCCcHHHHHHHHhhcCcCceeeeeeeecCceEEEEEEhhH
Confidence 99999999999999999999999999999987764 45666665533
No 46
>PF13740 ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A.
Probab=98.74 E-value=1.2e-07 Score=73.02 Aligned_cols=64 Identities=19% Similarity=0.136 Sum_probs=54.2
Q ss_pred EEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHH
Q 017268 184 YTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRHVDGLPISSEAERERVIQCLEAA 254 (374)
Q Consensus 184 ~t~v~V~~~DrpGLl~~i~~~l~~~glnI~~A~i~T~~g~~~dvF~V~~~~g~~~~~~~~~~~L~~~L~~~ 254 (374)
+.+|++.++||||+++.++++++++|+||.+.+..+.++++.-.+.|..+ ++..++|+++|...
T Consensus 2 ~~vItv~G~DrpGiv~~v~~~l~~~g~ni~d~~~~~~~~~f~~~~~v~~~-------~~~~~~l~~~L~~l 65 (76)
T PF13740_consen 2 QLVITVVGPDRPGIVAAVTGVLAEHGCNIEDSRQAVLGGRFTLIMLVSIP-------EDSLERLESALEEL 65 (76)
T ss_dssp EEEEEEEEE--TTHHHHHHHHHHCTT-EEEEEEEEEETTEEEEEEEEEES-------HHHHHHHHHHHHHH
T ss_pred EEEEEEEecCCCcHHHHHHHHHHHCCCcEEEEEEEEEcCeEEEEEEEEeC-------cccHHHHHHHHHHH
Confidence 57899999999999999999999999999999999999999999999876 34677888887664
No 47
>PF13740 ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A.
Probab=98.72 E-value=1.4e-07 Score=72.73 Aligned_cols=64 Identities=25% Similarity=0.404 Sum_probs=53.8
Q ss_pred eEEEEEEeCCccchHHHHHHHHHhcCCeEEEEEEEeeCCeeEEEEEEecCCCCCCCCCHHHHHHHHHHHHHH
Q 017268 49 HTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNV 120 (374)
Q Consensus 49 ~~~I~I~~~DrpGL~a~I~~vL~~~glnI~~A~I~T~~~~~~dvf~V~~~~~g~~~~~~~~~~~l~~~L~~~ 120 (374)
+..|+++|+||||+++.++++|+++||||.+.+..+.++.+...+.|.-+ ++..++|+++|.+.
T Consensus 2 ~~vItv~G~DrpGiv~~v~~~l~~~g~ni~d~~~~~~~~~f~~~~~v~~~--------~~~~~~l~~~L~~l 65 (76)
T PF13740_consen 2 QLVITVVGPDRPGIVAAVTGVLAEHGCNIEDSRQAVLGGRFTLIMLVSIP--------EDSLERLESALEEL 65 (76)
T ss_dssp EEEEEEEEE--TTHHHHHHHHHHCTT-EEEEEEEEEETTEEEEEEEEEES--------HHHHHHHHHHHHHH
T ss_pred EEEEEEEecCCCcHHHHHHHHHHHCCCcEEEEEEEEEcCeEEEEEEEEeC--------cccHHHHHHHHHHH
Confidence 56899999999999999999999999999999999999999999988752 24567888888873
No 48
>cd04870 ACT_PSP_1 CT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). The ACT_PSP_1 CD includes the first of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.50 E-value=5.8e-07 Score=68.92 Aligned_cols=62 Identities=16% Similarity=0.127 Sum_probs=51.7
Q ss_pred EEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEEeCCCCCCCCHHHHHHHHHHHHH
Q 017268 186 VITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRHVDGLPISSEAERERVIQCLEA 253 (374)
Q Consensus 186 ~v~V~~~DrpGLl~~i~~~l~~~glnI~~A~i~T~~g~~~dvF~V~~~~g~~~~~~~~~~~L~~~L~~ 253 (374)
+|+|.++||||++++++++|+++|+||.+.+..+.++.+.-.|.+.-|++. ..+.|++.|..
T Consensus 1 ~vtv~G~DrpGiv~~vt~~la~~~~nI~dl~~~~~~~~f~~~~~v~~p~~~------~~~~l~~~l~~ 62 (75)
T cd04870 1 LITVTGPDRPGLTSALTEVLAAHGVRILDVGQAVIHGRLSLGILVQIPDSA------DSEALLKDLLF 62 (75)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHCCCCEEecccEEEcCeeEEEEEEEcCCCC------CHHHHHHHHHH
Confidence 378999999999999999999999999999999999988888988877552 23555555554
No 49
>cd04893 ACT_GcvR_1 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR int
Probab=98.48 E-value=1e-06 Score=68.03 Aligned_cols=65 Identities=22% Similarity=0.350 Sum_probs=52.6
Q ss_pred EEEEEEeCCccchHHHHHHHHHhcCCeEEEEEEEeeCCeeEEEEEEecCCCCCCCCCHHHHHHHHHHHHHHHcC
Q 017268 50 TSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLRG 123 (374)
Q Consensus 50 ~~I~I~~~DrpGL~a~I~~vL~~~glnI~~A~I~T~~~~~~dvf~V~~~~~g~~~~~~~~~~~l~~~L~~~L~~ 123 (374)
+.|++.|+||||+.++|+++|+++|+||.+++.++.++.+...+.+..+ +. ..+.|++.|.. +..
T Consensus 2 ~iltv~g~Dr~GiVa~vs~~la~~g~nI~d~~q~~~~~~F~m~~~~~~~----~~----~~~~l~~~l~~-~~~ 66 (77)
T cd04893 2 LVISALGTDRPGILNELTRAVSESGCNILDSRMAILGTEFALTMLVEGS----WD----AIAKLEAALPG-LAR 66 (77)
T ss_pred EEEEEEeCCCChHHHHHHHHHHHcCCCEEEceeeEEcCEEEEEEEEEec----cc----cHHHHHHHHHH-HHH
Confidence 6799999999999999999999999999999999998888766666531 11 23678877777 443
No 50
>cd04893 ACT_GcvR_1 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR int
Probab=98.47 E-value=1.1e-06 Score=67.73 Aligned_cols=62 Identities=15% Similarity=0.163 Sum_probs=50.5
Q ss_pred EEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEEeCCCCCCCCHHHHHHHHHHHHH
Q 017268 185 TVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRHVDGLPISSEAERERVIQCLEA 253 (374)
Q Consensus 185 t~v~V~~~DrpGLl~~i~~~l~~~glnI~~A~i~T~~g~~~dvF~V~~~~g~~~~~~~~~~~L~~~L~~ 253 (374)
+++++.|+||||+++++++.|+++|+||.+++.++.++++.-.+.+..++ ...+.|++.|..
T Consensus 2 ~iltv~g~Dr~GiVa~vs~~la~~g~nI~d~~q~~~~~~F~m~~~~~~~~-------~~~~~l~~~l~~ 63 (77)
T cd04893 2 LVISALGTDRPGILNELTRAVSESGCNILDSRMAILGTEFALTMLVEGSW-------DAIAKLEAALPG 63 (77)
T ss_pred EEEEEEeCCCChHHHHHHHHHHHcCCCEEEceeeEEcCEEEEEEEEEecc-------ccHHHHHHHHHH
Confidence 57899999999999999999999999999999999999887777776542 124556655554
No 51
>cd04870 ACT_PSP_1 CT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). The ACT_PSP_1 CD includes the first of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.41 E-value=9.5e-07 Score=67.71 Aligned_cols=62 Identities=16% Similarity=0.235 Sum_probs=49.0
Q ss_pred EEEEEeCCCccHHHHHHHHHHhCCceEEEEEEeecCCeeeeEEEEEcCCCCCCChhHHHHHHHHHhh
Q 017268 264 ELELCTEDRVGLLSDITRIFRENSLSIKRAEISTIGGKVKDTFYVTDVTGNPVDPKIIDSIRRQIGH 330 (374)
Q Consensus 264 vieV~~~DRpGLL~~It~~L~~~~i~I~~a~i~T~g~~~~D~Fyv~d~~g~~l~~~~~~~l~~~l~~ 330 (374)
+++|.++||||++++|+++|+++|+||...+-.+.++.-.-.|.+.-+.+.. .+.|+++|..
T Consensus 1 ~vtv~G~DrpGiv~~vt~~la~~~~nI~dl~~~~~~~~f~~~~~v~~p~~~~-----~~~l~~~l~~ 62 (75)
T cd04870 1 LITVTGPDRPGLTSALTEVLAAHGVRILDVGQAVIHGRLSLGILVQIPDSAD-----SEALLKDLLF 62 (75)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHCCCCEEecccEEEcCeeEEEEEEEcCCCCC-----HHHHHHHHHH
Confidence 4789999999999999999999999999999899988777777776554322 3455555544
No 52
>PF01842 ACT: ACT domain; InterPro: IPR002912 The ACT domain is found in a variety of contexts and is proposed to be a conserved regulatory binding fold. ACT domains are linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. The archetypical ACT domain is the C-terminal regulatory domain of 3-phosphoglycerate dehydrogenase (3PGDH), which folds with a ferredoxin-like topology. A pair of ACT domains form an eight-stranded antiparallel sheet with two molecules of allosteric inhibitor serine bound in the interface. Biochemical exploration of a few other proteins containing ACT domains supports the suggestions that these domains contain the archetypical ACT structure [].; GO: 0016597 amino acid binding, 0008152 metabolic process; PDB: 3L76_B 2F06_B 3NRB_C 1Y7P_C 2QMX_A 2DT9_A 2ZHO_D 3K5P_A 3TVI_K 3C1M_C ....
Probab=98.40 E-value=3.3e-06 Score=62.12 Aligned_cols=61 Identities=26% Similarity=0.353 Sum_probs=46.7
Q ss_pred EEEEEEeCCccchHHHHHHHHHhcCCeEEEEEEEeeCCe--eEEEEEEecCCCCCCCCCHHHHHHHHHHHHH
Q 017268 50 TSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDR--AAAVVHVTDHSTGYAIKDPKRLSTIKELLFN 119 (374)
Q Consensus 50 ~~I~I~~~DrpGL~a~I~~vL~~~glnI~~A~I~T~~~~--~~dvf~V~~~~~g~~~~~~~~~~~l~~~L~~ 119 (374)
+.|.|.++||||+|++++.+|+++|+||..+.+.+.++. ....+.+.+. ...+.+.+.|++
T Consensus 1 ~~v~v~~~drpG~l~~v~~~la~~~inI~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~l~~ 63 (66)
T PF01842_consen 1 YRVRVIVPDRPGILADVTEILADHGINIDSISQSSDKDGVGIVFIVIVVDE---------EDLEKLLEELEA 63 (66)
T ss_dssp EEEEEEEETSTTHHHHHHHHHHHTTEEEEEEEEEEESSTTEEEEEEEEEEG---------HGHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHcCCCHHHeEEEecCCCceEEEEEEECCC---------CCHHHHHHHHHc
Confidence 578999999999999999999999999999999998773 3333333331 334566666665
No 53
>PF01842 ACT: ACT domain; InterPro: IPR002912 The ACT domain is found in a variety of contexts and is proposed to be a conserved regulatory binding fold. ACT domains are linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. The archetypical ACT domain is the C-terminal regulatory domain of 3-phosphoglycerate dehydrogenase (3PGDH), which folds with a ferredoxin-like topology. A pair of ACT domains form an eight-stranded antiparallel sheet with two molecules of allosteric inhibitor serine bound in the interface. Biochemical exploration of a few other proteins containing ACT domains supports the suggestions that these domains contain the archetypical ACT structure [].; GO: 0016597 amino acid binding, 0008152 metabolic process; PDB: 3L76_B 2F06_B 3NRB_C 1Y7P_C 2QMX_A 2DT9_A 2ZHO_D 3K5P_A 3TVI_K 3C1M_C ....
Probab=98.37 E-value=4.8e-06 Score=61.22 Aligned_cols=61 Identities=18% Similarity=0.180 Sum_probs=46.6
Q ss_pred EEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCC--eEEEEEEEEeCCCCCCCCHHHHHHHHHHHHH
Q 017268 185 TVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGRT--EAYQEFYIRHVDGLPISSEAERERVIQCLEA 253 (374)
Q Consensus 185 t~v~V~~~DrpGLl~~i~~~l~~~glnI~~A~i~T~~g--~~~dvF~V~~~~g~~~~~~~~~~~L~~~L~~ 253 (374)
+.|.|.++||||+|++++++|+++|+||..+.+.+.++ .....+.+.+. ...+.+.+.|++
T Consensus 1 ~~v~v~~~drpG~l~~v~~~la~~~inI~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~l~~ 63 (66)
T PF01842_consen 1 YRVRVIVPDRPGILADVTEILADHGINIDSISQSSDKDGVGIVFIVIVVDE--------EDLEKLLEELEA 63 (66)
T ss_dssp EEEEEEEETSTTHHHHHHHHHHHTTEEEEEEEEEEESSTTEEEEEEEEEEG--------HGHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHcCCCHHHeEEEecCCCceEEEEEEECCC--------CCHHHHHHHHHc
Confidence 46889999999999999999999999999999999765 44444444442 345555555554
No 54
>cd04894 ACT_ACR-like_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.26 E-value=3.5e-06 Score=61.24 Aligned_cols=67 Identities=19% Similarity=0.299 Sum_probs=58.3
Q ss_pred EEEEEEeCCccchHHHHHHHHHhcCCeEEEEEEEeeCCeeEEEEEEecCCCCCCCCCHHHHHHHHHHHHHH
Q 017268 50 TSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNV 120 (374)
Q Consensus 50 ~~I~I~~~DrpGL~a~I~~vL~~~glnI~~A~I~T~~~~~~dvf~V~~~~~g~~~~~~~~~~~l~~~L~~~ 120 (374)
++|+|.+||+.||=.++++++.+.|++|..+.+.|.|.....+|+|... ...+ +-+|+.|+++|.++
T Consensus 1 tvitvnCPDktGLgcdlcr~il~fGl~i~rgd~sTDGkWCyiv~wVv~~--~~~~--~~rW~lLK~RL~~~ 67 (69)
T cd04894 1 SVITINCPDKTGLGCDLCRIILEFGLNITRGDDSTDGRWCYIVFWVVPR--PPSI--KVRWDLLKNRLMSA 67 (69)
T ss_pred CEEEEeCCCccCcccHHHHHHHHhceEEEecccccCCcEEEEEEEEecC--CCCC--cccHHHHHHHHHhc
Confidence 4799999999999999999999999999999999999999999999863 2222 35899999998764
No 55
>cd04872 ACT_1ZPV ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein. This CD, ACT_1ZPV, includes those single ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein (pdb structure 1ZPV). Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.16 E-value=6.9e-06 Score=64.86 Aligned_cols=50 Identities=14% Similarity=0.119 Sum_probs=44.9
Q ss_pred EEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEEeCC
Q 017268 185 TVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRHVD 234 (374)
Q Consensus 185 t~v~V~~~DrpGLl~~i~~~l~~~glnI~~A~i~T~~g~~~dvF~V~~~~ 234 (374)
.++++.|+|+||++++++++|+++|+||.+.+..+.++.+.-.+.+..++
T Consensus 2 ~vl~i~g~D~pGiva~vt~~la~~g~nI~~~~~~~~~~~f~~~~~v~~~~ 51 (88)
T cd04872 2 AVITVVGKDRVGIVAGVSTKLAELNVNILDISQTIMDGYFTMIMIVDISE 51 (88)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHcCCCEEechhHhhCCccEEEEEEEeCC
Confidence 46899999999999999999999999999999999888887777777653
No 56
>cd04894 ACT_ACR-like_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.15 E-value=8.9e-06 Score=59.17 Aligned_cols=67 Identities=19% Similarity=0.220 Sum_probs=57.7
Q ss_pred EEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHH
Q 017268 185 TVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRHVDGLPISSEAERERVIQCLEAA 254 (374)
Q Consensus 185 t~v~V~~~DrpGLl~~i~~~l~~~glnI~~A~i~T~~g~~~dvF~V~~~~g~~~~~~~~~~~L~~~L~~~ 254 (374)
++|+|.|||+.||=.++++++.+.|++|..+.+.|.|....-+|+|...... + .-+|..|++.|.++
T Consensus 1 tvitvnCPDktGLgcdlcr~il~fGl~i~rgd~sTDGkWCyiv~wVv~~~~~-~--~~rW~lLK~RL~~~ 67 (69)
T cd04894 1 SVITINCPDKTGLGCDLCRIILEFGLNITRGDDSTDGRWCYIVFWVVPRPPS-I--KVRWDLLKNRLMSA 67 (69)
T ss_pred CEEEEeCCCccCcccHHHHHHHHhceEEEecccccCCcEEEEEEEEecCCCC-C--cccHHHHHHHHHhc
Confidence 3689999999999999999999999999999999999999999999864322 2 24889999888653
No 57
>cd04872 ACT_1ZPV ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein. This CD, ACT_1ZPV, includes those single ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein (pdb structure 1ZPV). Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.14 E-value=8.2e-06 Score=64.44 Aligned_cols=64 Identities=20% Similarity=0.293 Sum_probs=51.8
Q ss_pred EEEEEEeCCccchHHHHHHHHHhcCCeEEEEEEEeeCCeeEEEEEEecCCCCCCCCCHHHHHHHHHHHHH
Q 017268 50 TSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFN 119 (374)
Q Consensus 50 ~~I~I~~~DrpGL~a~I~~vL~~~glnI~~A~I~T~~~~~~dvf~V~~~~~g~~~~~~~~~~~l~~~L~~ 119 (374)
..|++.|+|+||++++|+++|+++|+||.+.+.++.++.+...+.+.-+ +... ..+.+++.|..
T Consensus 2 ~vl~i~g~D~pGiva~vt~~la~~g~nI~~~~~~~~~~~f~~~~~v~~~--~~~~----~~~~L~~~l~~ 65 (88)
T cd04872 2 AVITVVGKDRVGIVAGVSTKLAELNVNILDISQTIMDGYFTMIMIVDIS--ESNL----DFAELQEELEE 65 (88)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHcCCCEEechhHhhCCccEEEEEEEeC--CCCC----CHHHHHHHHHH
Confidence 5789999999999999999999999999999999988877777777643 2111 23678888877
No 58
>cd04869 ACT_GcvR_2 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the second of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR in
Probab=98.10 E-value=2.1e-05 Score=60.69 Aligned_cols=62 Identities=15% Similarity=0.139 Sum_probs=47.5
Q ss_pred EEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecC------CeEEEEEEEEeCCCCCCCCHHHHHHHHHHHHH
Q 017268 186 VITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGR------TEAYQEFYIRHVDGLPISSEAERERVIQCLEA 253 (374)
Q Consensus 186 ~v~V~~~DrpGLl~~i~~~l~~~glnI~~A~i~T~~------g~~~dvF~V~~~~g~~~~~~~~~~~L~~~L~~ 253 (374)
+|++.|+|+||++++|+++|+++|+||.+.+..+.+ +.+.-.+.+..|++. ...++++.|..
T Consensus 1 ~l~v~g~D~~Giv~~it~~l~~~~~nI~~~~~~~~~~~~~~~~~~~~~~~v~~p~~~------~~~~l~~~l~~ 68 (81)
T cd04869 1 VVEVVGNDRPGIVHEVTQFLAQRNINIEDLSTETYSAPMSGTPLFKAQATLALPAGT------DLDALREELEE 68 (81)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHcCCCeEEeEeeeecCCCCCcceEEEEEEEecCCCC------CHHHHHHHHHH
Confidence 378999999999999999999999999999999976 556666666665431 13455555544
No 59
>cd04875 ACT_F4HF-DF N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase). This CD includes the N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase) which catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to FH4 and formate. Formyl-FH4 hydrolase generates the formate that is used by purT-encoded 5'-phosphoribosylglycinamide transformylase for step three of de novo purine nucleotide synthesis. Formyl-FH4 hydrolase, a hexamer which is activated by methionine and inhibited by glycine, is proposed to regulate the balance FH4 and C1-FH4 in response to changing growth conditions. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.09 E-value=7.8e-06 Score=62.30 Aligned_cols=65 Identities=12% Similarity=0.100 Sum_probs=46.0
Q ss_pred EEEEEeCCCccHHHHHHHHHHhCCceEEEEEEeecCCeeeeEEEEEcCCCCCCChhHHHHHHHHHhh
Q 017268 264 ELELCTEDRVGLLSDITRIFRENSLSIKRAEISTIGGKVKDTFYVTDVTGNPVDPKIIDSIRRQIGH 330 (374)
Q Consensus 264 vieV~~~DRpGLL~~It~~L~~~~i~I~~a~i~T~g~~~~D~Fyv~d~~g~~l~~~~~~~l~~~l~~ 330 (374)
+|.|.|+||||++++|+++|+++|+||...+..+.. ....|++.-.-..|-.+...+.|+++|..
T Consensus 1 ii~v~g~D~~Giv~~it~~l~~~g~nI~~~~~~~~~--~~~~f~~~~~~~~~~~~~~~~~l~~~l~~ 65 (74)
T cd04875 1 ILTLSCPDRPGIVAAVSGFLAEHGGNIVESDQFVDP--DSGRFFMRVEFELEGFDLSREALEAAFAP 65 (74)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCEEeeeeeecC--CCCeEEEEEEEEeCCCCCCHHHHHHHHHH
Confidence 478999999999999999999999999999988742 22357775432223111135666666554
No 60
>cd04875 ACT_F4HF-DF N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase). This CD includes the N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase) which catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to FH4 and formate. Formyl-FH4 hydrolase generates the formate that is used by purT-encoded 5'-phosphoribosylglycinamide transformylase for step three of de novo purine nucleotide synthesis. Formyl-FH4 hydrolase, a hexamer which is activated by methionine and inhibited by glycine, is proposed to regulate the balance FH4 and C1-FH4 in response to changing growth conditions. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.09 E-value=2.4e-05 Score=59.58 Aligned_cols=63 Identities=11% Similarity=0.114 Sum_probs=44.7
Q ss_pred EEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEec--CCeEEEEEEEEeCCCCCCCCHHHHHHHHHHHHH
Q 017268 186 VITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTG--RTEAYQEFYIRHVDGLPISSEAERERVIQCLEA 253 (374)
Q Consensus 186 ~v~V~~~DrpGLl~~i~~~l~~~glnI~~A~i~T~--~g~~~dvF~V~~~~g~~~~~~~~~~~L~~~L~~ 253 (374)
+|++.|+||||++++|+++|+++|+||.+.+..+. ++.+.-.+.+..+.+. . ..+.|++.|..
T Consensus 1 ii~v~g~D~~Giv~~it~~l~~~g~nI~~~~~~~~~~~~~f~~~~~~~~~~~~-~----~~~~l~~~l~~ 65 (74)
T cd04875 1 ILTLSCPDRPGIVAAVSGFLAEHGGNIVESDQFVDPDSGRFFMRVEFELEGFD-L----SREALEAAFAP 65 (74)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCEEeeeeeecCCCCeEEEEEEEEeCCCC-C----CHHHHHHHHHH
Confidence 47899999999999999999999999999999973 3444434444444221 1 24556655544
No 61
>PRK00194 hypothetical protein; Validated
Probab=98.07 E-value=1.7e-05 Score=62.73 Aligned_cols=50 Identities=10% Similarity=0.080 Sum_probs=44.3
Q ss_pred EEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEEeC
Q 017268 184 YTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRHV 233 (374)
Q Consensus 184 ~t~v~V~~~DrpGLl~~i~~~l~~~glnI~~A~i~T~~g~~~dvF~V~~~ 233 (374)
.+++++.|+|+||++++++++|+++|+||.+.+..+.++.+.-.+.+.-+
T Consensus 3 ~~~ltv~g~DrpGiva~vt~~la~~g~nI~~~~~~~~~~~~~~~~~v~~~ 52 (90)
T PRK00194 3 KAIITVIGKDKVGIIAGVSTVLAELNVNILDISQTIMDGYFTMIMLVDIS 52 (90)
T ss_pred eEEEEEEcCCCCCHHHHHHHHHHHcCCCEEehhhHhhCCeeEEEEEEEec
Confidence 57899999999999999999999999999999999988877766666554
No 62
>cd04869 ACT_GcvR_2 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the second of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR in
Probab=98.07 E-value=2.8e-05 Score=60.00 Aligned_cols=62 Identities=27% Similarity=0.348 Sum_probs=48.1
Q ss_pred EEEEEeCCccchHHHHHHHHHhcCCeEEEEEEEeeC------CeeEEEEEEecCCCCCCCCCHHHHHHHHHHHHH
Q 017268 51 SIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHN------DRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFN 119 (374)
Q Consensus 51 ~I~I~~~DrpGL~a~I~~vL~~~glnI~~A~I~T~~------~~~~dvf~V~~~~~g~~~~~~~~~~~l~~~L~~ 119 (374)
.|+|.|+|+||++++|+++|+++|+||.+.+..+.+ +.+...+.+.-+ .+ . ....+++.|..
T Consensus 1 ~l~v~g~D~~Giv~~it~~l~~~~~nI~~~~~~~~~~~~~~~~~~~~~~~v~~p-~~--~----~~~~l~~~l~~ 68 (81)
T cd04869 1 VVEVVGNDRPGIVHEVTQFLAQRNINIEDLSTETYSAPMSGTPLFKAQATLALP-AG--T----DLDALREELEE 68 (81)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHcCCCeEEeEeeeecCCCCCcceEEEEEEEecC-CC--C----CHHHHHHHHHH
Confidence 378999999999999999999999999999999976 445555666542 11 1 13677777777
No 63
>PRK00194 hypothetical protein; Validated
Probab=98.06 E-value=1.7e-05 Score=62.80 Aligned_cols=68 Identities=24% Similarity=0.311 Sum_probs=52.1
Q ss_pred eEEEEEEeCCccchHHHHHHHHHhcCCeEEEEEEEeeCCeeEEEEEEecCCCCCCCCCHHHHHHHHHHHHHHHcC
Q 017268 49 HTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLRG 123 (374)
Q Consensus 49 ~~~I~I~~~DrpGL~a~I~~vL~~~glnI~~A~I~T~~~~~~dvf~V~~~~~g~~~~~~~~~~~l~~~L~~~L~~ 123 (374)
.+.|+|.|+|+||++++++++|+++|+||.+.+-.+.++.+...+.+.-+ +.+. + .+.|++.|.+ +.+
T Consensus 3 ~~~ltv~g~DrpGiva~vt~~la~~g~nI~~~~~~~~~~~~~~~~~v~~~--~~~~-~---~~~l~~~l~~-l~~ 70 (90)
T PRK00194 3 KAIITVIGKDKVGIIAGVSTVLAELNVNILDISQTIMDGYFTMIMLVDIS--ESKK-D---FAELKEELEE-LGK 70 (90)
T ss_pred eEEEEEEcCCCCCHHHHHHHHHHHcCCCEEehhhHhhCCeeEEEEEEEec--CCCC-C---HHHHHHHHHH-HHH
Confidence 67899999999999999999999999999999999877776665555432 2111 2 2567777776 443
No 64
>TIGR00655 PurU formyltetrahydrofolate deformylase. This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.
Probab=97.82 E-value=0.00058 Score=65.62 Aligned_cols=107 Identities=10% Similarity=0.128 Sum_probs=73.8
Q ss_pred EEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEec--CCeEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHHhhc-----
Q 017268 186 VITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTG--RTEAYQEFYIRHVDGLPISSEAERERVIQCLEAAIERR----- 258 (374)
Q Consensus 186 ~v~V~~~DrpGLl~~i~~~l~~~glnI~~A~i~T~--~g~~~dvF~V~~~~g~~~~~~~~~~~L~~~L~~~L~~r----- 258 (374)
+|++.|+||||+++.++++|+++|+||.+.+.++. +|++.-.+.+..+.. .. ..+.|++.|..++..+
T Consensus 2 ~itv~g~D~~GIVA~Vt~~La~~g~NI~d~sq~~~~~~~~F~mr~~v~~~~~-~~----~~~~l~~~l~~~~~~~~~l~i 76 (280)
T TIGR00655 2 ILLVSCPDQKGLVAAISTFIAKHGANIISNDQHTDPETGRFFMRVEFQLEGF-RL----EESSLLAAFKSALAEKFEMTW 76 (280)
T ss_pred EEEEECCCCCChHHHHHHHHHHCCCCEEeeeEEEcCCCCeEEEEEEEEeCCC-CC----CHHHHHHHHHHHHHHHhCCEE
Confidence 58999999999999999999999999999999985 477776777765432 12 2445666555522111
Q ss_pred ----cCCceEEEEEeCCCccHHHHHHHHHHhCCceEEEEEEee
Q 017268 259 ----ASEGLELELCTEDRVGLLSDITRIFRENSLSIKRAEIST 297 (374)
Q Consensus 259 ----~~~~tvieV~~~DRpGLL~~It~~L~~~~i~I~~a~i~T 297 (374)
..+...|-|-+--+-.-|.+|......-.++.+-+-+-+
T Consensus 77 ~l~~~~~~~ki~vl~Sg~g~nl~~l~~~~~~g~l~~~i~~vis 119 (280)
T TIGR00655 77 ELILADKLKRVAILVSKEDHCLGDLLWRWYSGELDAEIALVIS 119 (280)
T ss_pred EEecCCCCcEEEEEEcCCChhHHHHHHHHHcCCCCcEEEEEEE
Confidence 123345555555666788888888887766555444433
No 65
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=97.79 E-value=0.00079 Score=64.93 Aligned_cols=110 Identities=15% Similarity=0.149 Sum_probs=72.3
Q ss_pred CEEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEe--cCCeEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHHhh---
Q 017268 183 DYTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNT--GRTEAYQEFYIRHVDGLPISSEAERERVIQCLEAAIER--- 257 (374)
Q Consensus 183 ~~t~v~V~~~DrpGLl~~i~~~l~~~glnI~~A~i~T--~~g~~~dvF~V~~~~g~~~~~~~~~~~L~~~L~~~L~~--- 257 (374)
...+|++.|+|||||++.++++|+++|+||.+.+..+ .+|.+.-.+.+.-. ..+ ...+.|++.|...-+.
T Consensus 5 ~~~vitv~G~DrpGIVa~Vt~~La~~g~NI~d~s~~~~~~~g~F~m~i~v~~~-~~~----~~~~~L~~~L~~l~~~l~l 79 (286)
T PRK06027 5 QRYVLTLSCPDRPGIVAAVSNFLYEHGGNIVDADQFVDPETGRFFMRVEFEGD-GLI----FNLETLRADFAALAEEFEM 79 (286)
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHCCCCEEEceeEEcCCCCeEEEEEEEEeC-CCC----CCHHHHHHHHHHHHHHhCC
Confidence 4678999999999999999999999999999999999 77876666666541 111 1256666666553211
Q ss_pred -----ccCCceEEEEEeCCCccHHHHHHHHHHhCCceEEEEEEee
Q 017268 258 -----RASEGLELELCTEDRVGLLSDITRIFRENSLSIKRAEIST 297 (374)
Q Consensus 258 -----r~~~~tvieV~~~DRpGLL~~It~~L~~~~i~I~~a~i~T 297 (374)
..++...|-|.+.-+---|..+.+....-.++.+-+-+-|
T Consensus 80 ~i~l~~~~~~~ri~vl~Sg~gsnl~al~~~~~~~~~~~~i~~vis 124 (286)
T PRK06027 80 DWRLLDSAERKRVVILVSKEDHCLGDLLWRWRSGELPVEIAAVIS 124 (286)
T ss_pred EEEEcccccCcEEEEEEcCCCCCHHHHHHHHHcCCCCcEEEEEEE
Confidence 1123344555444445566667777666555444444433
No 66
>PF13291 ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A.
Probab=97.75 E-value=0.00025 Score=54.73 Aligned_cols=64 Identities=31% Similarity=0.457 Sum_probs=49.6
Q ss_pred ceEEEEEeCCCccHHHHHHHHHHhCCceEEEEEEeec--CCeeeeEEEEEcCCCCCCChhHHHHHHHHHhh
Q 017268 262 GLELELCTEDRVGLLSDITRIFRENSLSIKRAEISTI--GGKVKDTFYVTDVTGNPVDPKIIDSIRRQIGH 330 (374)
Q Consensus 262 ~tvieV~~~DRpGLL~~It~~L~~~~i~I~~a~i~T~--g~~~~D~Fyv~d~~g~~l~~~~~~~l~~~l~~ 330 (374)
.+.|+|.+.||||+|++|++++++.|+||..+.+.+. ++.+.-.|.+.-. +-++++.|.++|..
T Consensus 6 ~~~l~i~~~dr~GlL~dI~~~i~~~~~nI~~i~~~~~~~~~~~~~~l~v~V~-----d~~~L~~ii~~L~~ 71 (80)
T PF13291_consen 6 PVRLRIEAEDRPGLLADITSVISENGVNIRSINARTNKDDGTARITLTVEVK-----DLEHLNQIIRKLRQ 71 (80)
T ss_dssp EEEEEEEEE--TTHHHHHHHHHHCSSSEEEEEEEEE--ETTEEEEEEEEEES-----SHHHHHHHHHHHCT
T ss_pred EEEEEEEEEcCCCHHHHHHHHHHHCCCCeEEEEeEEeccCCEEEEEEEEEEC-----CHHHHHHHHHHHHC
Confidence 3679999999999999999999999999999999995 4566666766433 23677888777765
No 67
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed
Probab=97.74 E-value=0.00069 Score=65.36 Aligned_cols=111 Identities=10% Similarity=0.084 Sum_probs=70.0
Q ss_pred CEEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEE--ecCCeEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHHhh---
Q 017268 183 DYTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVN--TGRTEAYQEFYIRHVDGLPISSEAERERVIQCLEAAIER--- 257 (374)
Q Consensus 183 ~~t~v~V~~~DrpGLl~~i~~~l~~~glnI~~A~i~--T~~g~~~dvF~V~~~~g~~~~~~~~~~~L~~~L~~~L~~--- 257 (374)
...+|+|.|+|||||++.|+++|+++|+||.+.+.+ +..+.+.-.+.+.+...... ..+.|+++|...-..
T Consensus 8 ~~~iitv~G~Dr~GIVA~Vs~~Lae~g~NI~disq~~d~~~~~ffm~i~~~~~~~~~~----~~~~l~~~l~~l~~~l~l 83 (289)
T PRK13010 8 PSYVLTLACPSAPGIVAAVSGFLAEKGCYIVELTQFDDDESGRFFMRVSFHAQSAEAA----SVDTFRQEFQPVAEKFDM 83 (289)
T ss_pred cCEEEEEECCCCCCcHHHHHHHHHHCCCCEEecccccccccCcEEEEEEEEcCCCCCC----CHHHHHHHHHHHHHHhCC
Confidence 356799999999999999999999999999999997 44444443433332211112 244566655543211
Q ss_pred -----ccCCceEEEEEeCCCccHHHHHHHHHHhCCceEEEEEEee
Q 017268 258 -----RASEGLELELCTEDRVGLLSDITRIFRENSLSIKRAEIST 297 (374)
Q Consensus 258 -----r~~~~tvieV~~~DRpGLL~~It~~L~~~~i~I~~a~i~T 297 (374)
...+...|-|.+--+..-|..|..+...-.++.+-+-+-+
T Consensus 84 ~~~i~~~~~~~kiavl~Sg~g~nl~al~~~~~~~~l~~~i~~vis 128 (289)
T PRK13010 84 QWAIHPDGQRPKVVIMVSKFDHCLNDLLYRWRMGELDMDIVGIIS 128 (289)
T ss_pred eEEEecCCCCeEEEEEEeCCCccHHHHHHHHHCCCCCcEEEEEEE
Confidence 1123344555555556677777777777666655544444
No 68
>COG4747 ACT domain-containing protein [General function prediction only]
Probab=97.69 E-value=0.0033 Score=51.92 Aligned_cols=113 Identities=19% Similarity=0.161 Sum_probs=82.4
Q ss_pred EEEEEeCCccchHHHHHHHHHhcCCeEEEEEEEeeCCeeEEEEEEecCCCCCCCCCHHHHHHHHHHHHHHHcCCCccccc
Q 017268 51 SIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLRGYDDFRKA 130 (374)
Q Consensus 51 ~I~I~~~DrpGL~a~I~~vL~~~glnI~~A~I~T~~~~~~dvf~V~~~~~g~~~~~~~~~~~l~~~L~~~L~~~~~~~~~ 130 (374)
.|.|..-++||-|+..+.+|..+|+||..-.|.-+++--..-+.|.++ + .-.+.|++ +|
T Consensus 5 QISvFlENk~GRL~~~~~~L~eagINiRA~tiAdt~dFGIiRmvV~~~-------d-----~A~~~Lee--~g------- 63 (142)
T COG4747 5 QISVFLENKPGRLASVANKLKEAGINIRAFTIADTGDFGIIRMVVDRP-------D-----EAHSVLEE--AG------- 63 (142)
T ss_pred EEEEEecCCcchHHHHHHHHHHcCCceEEEEeccccCcceEEEEcCCh-------H-----HHHHHHHH--CC-------
Confidence 688999999999999999999999999987777777654445555331 1 11233333 22
Q ss_pred ccccCCCCCCcchhhhhhhcccCchhhhhhhhccccCCCCCCCEEEEEcCCCCEEEEEEEeCCCcchHHHHHHHHHhCCc
Q 017268 131 KTSLSPPGIMNRERRLHQIMFDDRDYERVEKAVGRVEDKSSRPQVTVLNIEKDYTVITMRSKDRPKLLFDIVCTLTDMQY 210 (374)
Q Consensus 131 ~~~l~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~t~v~V~~~DrpGLl~~i~~~l~~~gl 210 (374)
| .|.+ .-++-|..+|+||=|..|+++|.++++
T Consensus 64 -------------------------F-----------------~Vr~------~dVlaVEmeD~PG~l~~I~~vl~d~di 95 (142)
T COG4747 64 -------------------------F-----------------TVRE------TDVLAVEMEDVPGGLSRIAEVLGDADI 95 (142)
T ss_pred -------------------------c-----------------EEEe------eeEEEEEecCCCCcHHHHHHHHhhcCc
Confidence 1 0111 234778899999999999999999999
Q ss_pred eEEEEEEEec-CCeEEEEEEEEe
Q 017268 211 VVFHGMVNTG-RTEAYQEFYIRH 232 (374)
Q Consensus 211 nI~~A~i~T~-~g~~~dvF~V~~ 232 (374)
|+.....++. ...++-+|.+.+
T Consensus 96 NldYiYAFv~ek~KAlli~r~ed 118 (142)
T COG4747 96 NLDYIYAFVTEKQKALLIVRVED 118 (142)
T ss_pred CceeeeeeeecCceEEEEEEhhH
Confidence 9999999874 567776666544
No 69
>COG3830 ACT domain-containing protein [Signal transduction mechanisms]
Probab=97.68 E-value=6.2e-05 Score=59.18 Aligned_cols=50 Identities=14% Similarity=0.034 Sum_probs=44.6
Q ss_pred EEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEEeC
Q 017268 184 YTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRHV 233 (374)
Q Consensus 184 ~t~v~V~~~DrpGLl~~i~~~l~~~glnI~~A~i~T~~g~~~dvF~V~~~ 233 (374)
..+|+|.++||||+.+.++++|+++|+||.+-...-.+|++.-.+.|.-+
T Consensus 3 ~avITV~GkDr~GIva~is~vLAe~~vNIldisQtvm~~~ftm~~lV~~~ 52 (90)
T COG3830 3 RAVITVIGKDRVGIVAAVSRVLAEHGVNILDISQTVMDGFFTMIMLVDIS 52 (90)
T ss_pred eEEEEEEcCCCCchhHHHHHHHHHcCCcEEEHHHHHHhhhceeeeEEcCC
Confidence 46799999999999999999999999999998887788988878888664
No 70
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=97.61 E-value=0.002 Score=62.14 Aligned_cols=108 Identities=9% Similarity=0.106 Sum_probs=73.6
Q ss_pred EEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEec--CCeEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHHhh----
Q 017268 184 YTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTG--RTEAYQEFYIRHVDGLPISSEAERERVIQCLEAAIER---- 257 (374)
Q Consensus 184 ~t~v~V~~~DrpGLl~~i~~~l~~~glnI~~A~i~T~--~g~~~dvF~V~~~~g~~~~~~~~~~~L~~~L~~~L~~---- 257 (374)
..+|+|.|+||||+++.+|++|+++|+||.+.+..+. ++.+.-.+.+..+.+. ..+.|++.|......
T Consensus 7 ~~vitv~G~DrpGIVa~VT~~La~~~vNI~dls~~~~~~~~~F~m~~~~~~p~~~------~~~~L~~~L~~l~~~l~l~ 80 (286)
T PRK13011 7 TFVLTLSCPSAAGIVAAVTGFLAEHGCYITELHSFDDRLSGRFFMRVEFHSEEGL------DEDALRAGFAPIAARFGMQ 80 (286)
T ss_pred eEEEEEEeCCCCCHHHHHHHHHHhCCCCEEEeeeeecCCCCeEEEEEEEecCCCC------CHHHHHHHHHHHHHHhCcE
Confidence 5679999999999999999999999999999999853 4566656666655432 245566665543211
Q ss_pred ----ccCCceEEEEEeCCCccHHHHHHHHHHhCCceEEEEEEee
Q 017268 258 ----RASEGLELELCTEDRVGLLSDITRIFRENSLSIKRAEIST 297 (374)
Q Consensus 258 ----r~~~~tvieV~~~DRpGLL~~It~~L~~~~i~I~~a~i~T 297 (374)
..++...|-|.+.-+---|..+..+...-.++.+-+-+-|
T Consensus 81 i~i~~~~~~~ri~vl~Sg~g~nl~al~~~~~~~~~~~~i~~vis 124 (286)
T PRK13011 81 WELHDPAARPKVLIMVSKFDHCLNDLLYRWRIGELPMDIVGVVS 124 (286)
T ss_pred EEEeecccCceEEEEEcCCcccHHHHHHHHHcCCCCcEEEEEEE
Confidence 1122344555555566778888888877776655555444
No 71
>COG3830 ACT domain-containing protein [Signal transduction mechanisms]
Probab=97.57 E-value=0.00011 Score=57.76 Aligned_cols=67 Identities=18% Similarity=0.209 Sum_probs=51.7
Q ss_pred eEEEEEEeCCccchHHHHHHHHHhcCCeEEEEEEEeeCCeeEEEEEEecCCCCCCCCCHHHHHHHHHHHHHHH
Q 017268 49 HTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVL 121 (374)
Q Consensus 49 ~~~I~I~~~DrpGL~a~I~~vL~~~glnI~~A~I~T~~~~~~dvf~V~~~~~g~~~~~~~~~~~l~~~L~~~L 121 (374)
...|+|.+.||||+.+.++++|+++|+||++-...-..+.+...+.|.-+ ... .....++..|....
T Consensus 3 ~avITV~GkDr~GIva~is~vLAe~~vNIldisQtvm~~~ftm~~lV~~~--~~~----~d~~~lr~~l~~~~ 69 (90)
T COG3830 3 RAVITVIGKDRVGIVAAVSRVLAEHGVNILDISQTVMDGFFTMIMLVDIS--KEV----VDFAALRDELAAEG 69 (90)
T ss_pred eEEEEEEcCCCCchhHHHHHHHHHcCCcEEEHHHHHHhhhceeeeEEcCC--hHh----ccHHHHHHHHHHHH
Confidence 46899999999999999999999999999998877778888888878542 111 22356666666643
No 72
>TIGR00655 PurU formyltetrahydrofolate deformylase. This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.
Probab=97.56 E-value=0.00032 Score=67.35 Aligned_cols=69 Identities=16% Similarity=0.216 Sum_probs=51.6
Q ss_pred EEEEEeCCccchHHHHHHHHHhcCCeEEEEEEEee--CCeeEEEEEEecCCCCCCCCCHHHHHHHHHHHHHHHcCCC
Q 017268 51 SIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTH--NDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLRGYD 125 (374)
Q Consensus 51 ~I~I~~~DrpGL~a~I~~vL~~~glnI~~A~I~T~--~~~~~dvf~V~~~~~g~~~~~~~~~~~l~~~L~~~L~~~~ 125 (374)
.|+|.|+|+||+.+.|+++|+++|+||.+.+.++. ++.+...+.+.-+ +..+ ..+.|++.|..++..+.
T Consensus 2 ~itv~g~D~~GIVA~Vt~~La~~g~NI~d~sq~~~~~~~~F~mr~~v~~~--~~~~----~~~~l~~~l~~~~~~~~ 72 (280)
T TIGR00655 2 ILLVSCPDQKGLVAAISTFIAKHGANIISNDQHTDPETGRFFMRVEFQLE--GFRL----EESSLLAAFKSALAEKF 72 (280)
T ss_pred EEEEECCCCCChHHHHHHHHHHCCCCEEeeeEEEcCCCCeEEEEEEEEeC--CCCC----CHHHHHHHHHHHHHHHh
Confidence 58999999999999999999999999999999985 4666666666542 2222 13577777777444433
No 73
>PF13291 ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A.
Probab=97.54 E-value=0.00071 Score=52.13 Aligned_cols=63 Identities=24% Similarity=0.379 Sum_probs=44.7
Q ss_pred eEEEEEEeCCccchHHHHHHHHHhcCCeEEEEEEEee--CCeeEEEEEEecCCCCCCCCCHHHHHHHHHHHH
Q 017268 49 HTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTH--NDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLF 118 (374)
Q Consensus 49 ~~~I~I~~~DrpGL~a~I~~vL~~~glnI~~A~I~T~--~~~~~dvf~V~~~~~g~~~~~~~~~~~l~~~L~ 118 (374)
.+.|.|.+.||||+|++|+.+++..|+||.+.++.+. ++.+...|.|.- .+.+.++.|-..|+
T Consensus 6 ~~~l~i~~~dr~GlL~dI~~~i~~~~~nI~~i~~~~~~~~~~~~~~l~v~V-------~d~~~L~~ii~~L~ 70 (80)
T PF13291_consen 6 PVRLRIEAEDRPGLLADITSVISENGVNIRSINARTNKDDGTARITLTVEV-------KDLEHLNQIIRKLR 70 (80)
T ss_dssp EEEEEEEEE--TTHHHHHHHHHHCSSSEEEEEEEEE--ETTEEEEEEEEEE-------SSHHHHHHHHHHHC
T ss_pred EEEEEEEEEcCCCHHHHHHHHHHHCCCCeEEEEeEEeccCCEEEEEEEEEE-------CCHHHHHHHHHHHH
Confidence 3578999999999999999999999999999999996 345555666643 13344455544443
No 74
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed
Probab=97.54 E-value=0.00032 Score=67.69 Aligned_cols=67 Identities=16% Similarity=0.274 Sum_probs=48.3
Q ss_pred CeEEEEEEeCCccchHHHHHHHHHhcCCeEEEEEEE--eeCCeeEEEEEEecCCCCCCCCCHHHHHHHHHHHHH
Q 017268 48 EHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIW--THNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFN 119 (374)
Q Consensus 48 ~~~~I~I~~~DrpGL~a~I~~vL~~~glnI~~A~I~--T~~~~~~dvf~V~~~~~g~~~~~~~~~~~l~~~L~~ 119 (374)
....|+|.|+||||+.++|+++|+++|+||.+.+.+ +..+.+...+.+.+. ....+ ..+.|++.|.+
T Consensus 8 ~~~iitv~G~Dr~GIVA~Vs~~Lae~g~NI~disq~~d~~~~~ffm~i~~~~~-~~~~~----~~~~l~~~l~~ 76 (289)
T PRK13010 8 PSYVLTLACPSAPGIVAAVSGFLAEKGCYIVELTQFDDDESGRFFMRVSFHAQ-SAEAA----SVDTFRQEFQP 76 (289)
T ss_pred cCEEEEEECCCCCCcHHHHHHHHHHCCCCEEecccccccccCcEEEEEEEEcC-CCCCC----CHHHHHHHHHH
Confidence 456899999999999999999999999999999998 444555544333321 11122 23567777776
No 75
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=97.51 E-value=0.00044 Score=66.69 Aligned_cols=71 Identities=21% Similarity=0.289 Sum_probs=54.2
Q ss_pred CeEEEEEEeCCccchHHHHHHHHHhcCCeEEEEEEEe--eCCeeEEEEEEecCCCCCCCCCHHHHHHHHHHHHHHHcCCC
Q 017268 48 EHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWT--HNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLRGYD 125 (374)
Q Consensus 48 ~~~~I~I~~~DrpGL~a~I~~vL~~~glnI~~A~I~T--~~~~~~dvf~V~~~~~g~~~~~~~~~~~l~~~L~~~L~~~~ 125 (374)
....|+|.|+||||+.+.|+++|+++|+||.+.+.++ .++.+...+.+.- +..+ ...+.|++.|.+ +.++.
T Consensus 5 ~~~vitv~G~DrpGIVa~Vt~~La~~g~NI~d~s~~~~~~~g~F~m~i~v~~--~~~~----~~~~~L~~~L~~-l~~~l 77 (286)
T PRK06027 5 QRYVLTLSCPDRPGIVAAVSNFLYEHGGNIVDADQFVDPETGRFFMRVEFEG--DGLI----FNLETLRADFAA-LAEEF 77 (286)
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHCCCCEEEceeEEcCCCCeEEEEEEEEe--CCCC----CCHHHHHHHHHH-HHHHh
Confidence 4678999999999999999999999999999999999 7776555555542 1122 125778888887 44433
No 76
>cd04887 ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI and related domains. The ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI, a malolactic enzyme (MalLac-Enz) which converts malate to lactate, and other related ACT domains. The yqkJ product is predicted to convert malate directly to lactate, as opposed to related malic enzymes that convert malate to pyruvate. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.49 E-value=0.0012 Score=49.79 Aligned_cols=61 Identities=18% Similarity=0.212 Sum_probs=46.9
Q ss_pred EEEEeCCCccHHHHHHHHHHhCCceEEEEEEeecC-CeeeeEEEEEcCCCCCCChhHHHHHHHHHhh
Q 017268 265 LELCTEDRVGLLSDITRIFRENSLSIKRAEISTIG-GKVKDTFYVTDVTGNPVDPKIIDSIRRQIGH 330 (374)
Q Consensus 265 ieV~~~DRpGLL~~It~~L~~~~i~I~~a~i~T~g-~~~~D~Fyv~d~~g~~l~~~~~~~l~~~l~~ 330 (374)
|.|.+.||||+|.+|+.++++.|+||..+...+.. +.+...|-+.-. +.++++.+.++|..
T Consensus 2 l~v~~~d~~g~L~~i~~~i~~~~~nI~~v~~~~~~~~~~~~~~~vev~-----~~~~l~~i~~~L~~ 63 (74)
T cd04887 2 LRLELPNRPGMLGRVTTAIGEAGGDIGAIDLVEQGRDYTVRDITVDAP-----SEEHAETIVAAVRA 63 (74)
T ss_pred EEEEeCCCCchHHHHHHHHHHcCCcEEEEEEEEecCCEEEEEEEEEcC-----CHHHHHHHHHHHhc
Confidence 78999999999999999999999999999887753 455555655333 13566777777664
No 77
>cd04877 ACT_TyrR N-terminal ACT domain of the TyrR protein. ACT_TyrR: N-terminal ACT domain of the TyrR protein. The TyrR protein of Escherichia coli controls the expression of a group of transcription units (TyrR regulon) whose gene products are involved in the biosynthesis or transport of the aromatic amino acids. Binding to specific DNA sequences known as TyrR boxes, the TyrR protein can either activate or repress transcription at different sigma70 promoters. Its regulatory activity occurs in response to intracellular levels of tyrosine, phenylalanine and tryptophan. The TyrR protein consists of an N-terminal region important for transcription activation with an ATP-independent aromatic amino acid binding site (contained within the ACT domain) and is involved in dimerization; a central region with an ATP binding site, an ATP-dependent aromatic amino acid binding site and is involved in hexamerization; and a helix turn helix DNA binding C-terminal region. In solution, in the absence
Probab=97.33 E-value=0.0011 Score=50.50 Aligned_cols=59 Identities=20% Similarity=0.439 Sum_probs=44.1
Q ss_pred EEEEEeCCCccHHHHHHHHHHhCCceEEEEEEeecCCeeeeEEEEEcCCCCCCChhHHHHHHHHHhh
Q 017268 264 ELELCTEDRVGLLSDITRIFRENSLSIKRAEISTIGGKVKDTFYVTDVTGNPVDPKIIDSIRRQIGH 330 (374)
Q Consensus 264 vieV~~~DRpGLL~~It~~L~~~~i~I~~a~i~T~g~~~~D~Fyv~d~~g~~l~~~~~~~l~~~l~~ 330 (374)
.++|.+.||+|+|++|+.++++.|+||.+..+.+. +. .+++-. .. +-++++.|.++|..
T Consensus 2 ~l~I~~~dr~Gll~dI~~~i~~~~~nI~~~~~~~~-~~----i~l~i~-v~--~~~~L~~li~~L~~ 60 (74)
T cd04877 2 RLEITCEDRLGITQEVLDLLVEHNIDLRGIEIDPK-GR----IYLNFP-TI--EFEKLQTLMPEIRR 60 (74)
T ss_pred EEEEEEEccchHHHHHHHHHHHCCCceEEEEEecC-Ce----EEEEeE-ec--CHHHHHHHHHHHhC
Confidence 47899999999999999999999999999999875 22 333211 11 23567777777764
No 78
>cd04887 ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI and related domains. The ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI, a malolactic enzyme (MalLac-Enz) which converts malate to lactate, and other related ACT domains. The yqkJ product is predicted to convert malate directly to lactate, as opposed to related malic enzymes that convert malate to pyruvate. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.32 E-value=0.0027 Score=47.82 Aligned_cols=61 Identities=13% Similarity=0.253 Sum_probs=45.3
Q ss_pred EEEEeCCccchHHHHHHHHHhcCCeEEEEEEEeeC-CeeEEEEEEecCCCCCCCCCHHHHHHHHHHHHH
Q 017268 52 IEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHN-DRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFN 119 (374)
Q Consensus 52 I~I~~~DrpGL~a~I~~vL~~~glnI~~A~I~T~~-~~~~dvf~V~~~~~g~~~~~~~~~~~l~~~L~~ 119 (374)
|.|.+.|+||+|++|+.+++..|.||.+....+.. +.+...|.+.- .+.+.++.+...|++
T Consensus 2 l~v~~~d~~g~L~~i~~~i~~~~~nI~~v~~~~~~~~~~~~~~~vev-------~~~~~l~~i~~~L~~ 63 (74)
T cd04887 2 LRLELPNRPGMLGRVTTAIGEAGGDIGAIDLVEQGRDYTVRDITVDA-------PSEEHAETIVAAVRA 63 (74)
T ss_pred EEEEeCCCCchHHHHHHHHHHcCCcEEEEEEEEecCCEEEEEEEEEc-------CCHHHHHHHHHHHhc
Confidence 67899999999999999999999999988887754 44445565543 123455666666654
No 79
>PRK07431 aspartate kinase; Provisional
Probab=97.28 E-value=0.17 Score=53.74 Aligned_cols=197 Identities=13% Similarity=0.205 Sum_probs=116.5
Q ss_pred CCCCeEEEEEEeC---CccchHHHHHHHHHhcCCeEEEEEEEeeCCeeEEEEEEecCCCCCCCCCHHHHHHHHHHHHHHH
Q 017268 45 PTEEHTSIEFTGT---DRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVL 121 (374)
Q Consensus 45 ~~~~~~~I~I~~~---DrpGL~a~I~~vL~~~glnI~~A~I~T~~~~~~dvf~V~~~~~g~~~~~~~~~~~l~~~L~~~L 121 (374)
...+...|.|++. +.+|+++++..+|+..|+||+.-. + ......|.|.. +..++.-+.|++.+
T Consensus 344 ~~~~~a~IsvvG~gm~~~~gi~~ki~~aL~~~~I~i~~i~--s--Se~~Is~vv~~----------~d~~~av~~Lh~~f 409 (587)
T PRK07431 344 VETNVAKLSISGAGMMGRPGIAAKMFDTLAEAGINIRMIS--T--SEVKVSCVIDA----------EDGDKALRAVCEAF 409 (587)
T ss_pred EeCCeEEEEEECCCcccCccHHHHHHHHHHHCCCcEEEEE--c--CCCEEEEEEcH----------HHHHHHHHHHHHHh
Confidence 3456778888886 789999999999999999997544 2 23344555543 22345556677766
Q ss_pred cCCCcccccccccCCCCCCcchhhhhhhcccCchhhhhhhhccccCCCCCCCEEEEEcCCCCEEEEEEE-eCCCcchHHH
Q 017268 122 RGYDDFRKAKTSLSPPGIMNRERRLHQIMFDDRDYERVEKAVGRVEDKSSRPQVTVLNIEKDYTVITMR-SKDRPKLLFD 200 (374)
Q Consensus 122 ~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~t~v~V~-~~DrpGLl~~ 200 (374)
..+.. ...+.|+ +. .. ...+.-.+. ...+...|++. .++.+|++++
T Consensus 410 ~~~~~----~~~~~~~-------~~--------~~-------------~~~~v~gIa-~~~~~~~i~l~~~~~~~g~~a~ 456 (587)
T PRK07431 410 ELEDS----QIEINPT-------AS--------GQ-------------DEPEVRGVA-LDRNQAQLAIRNVPDRPGMAAS 456 (587)
T ss_pred ccCCc----ccccCcc-------cc--------CC-------------CCCcEEEEE-ccCCEEEEEECCCCCCccHHHH
Confidence 43321 0001100 00 00 011111111 13345566664 5788999999
Q ss_pred HHHHHHhCCceEEEEEEEe-cC--CeEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHHhh-c--c-CCceEEEEEeC---
Q 017268 201 IVCTLTDMQYVVFHGMVNT-GR--TEAYQEFYIRHVDGLPISSEAERERVIQCLEAAIER-R--A-SEGLELELCTE--- 270 (374)
Q Consensus 201 i~~~l~~~glnI~~A~i~T-~~--g~~~dvF~V~~~~g~~~~~~~~~~~L~~~L~~~L~~-r--~-~~~tvieV~~~--- 270 (374)
+...|+++|++|..-.... .+ |..--.|.+...+ ...+.++.+.|...+.. . . ..-..|.|.+.
T Consensus 457 if~~l~~~~i~id~i~~~~~~~~~~~~~isf~v~~~~------~~~~~~~l~~l~~~~~~~~i~~~~~va~VSvVG~gm~ 530 (587)
T PRK07431 457 IFGALAEANISVDMIVQSQRCRSDGTRDISFTVPKED------REAAQKVLRELAKQLPGAEVEDGPAIAKVSIVGAGMP 530 (587)
T ss_pred HHHHHHHcCCeEEEEEecCCCCCCCceeEEEEEcHHH------HHHHHHHHHHHHHhcCCceEEEeCCeEEEEEECCCcc
Confidence 9999999999998764432 22 2333345554321 11223332233322211 0 1 23467888886
Q ss_pred CCccHHHHHHHHHHhCCceEEEEE
Q 017268 271 DRVGLLSDITRIFRENSLSIKRAE 294 (374)
Q Consensus 271 DRpGLL~~It~~L~~~~i~I~~a~ 294 (374)
.+||++.++.++|++.||+|....
T Consensus 531 ~~~gv~~ri~~aL~~~~I~v~~i~ 554 (587)
T PRK07431 531 GTPGVAARMFRALADAGINIEMIA 554 (587)
T ss_pred CCcCHHHHHHHHHHHCCCcEEEee
Confidence 889999999999999999996665
No 80
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=97.27 E-value=0.0016 Score=48.27 Aligned_cols=43 Identities=21% Similarity=0.374 Sum_probs=37.2
Q ss_pred EEEEEeCCCccHHHHHHHHHHhCCceEEEEEEeecCCeeeeEEEE
Q 017268 264 ELELCTEDRVGLLSDITRIFRENSLSIKRAEISTIGGKVKDTFYV 308 (374)
Q Consensus 264 vieV~~~DRpGLL~~It~~L~~~~i~I~~a~i~T~g~~~~D~Fyv 308 (374)
.+.|..+|+||.|++|+++|++.|+||.+..+...++. -++.+
T Consensus 3 ri~v~v~d~pG~La~v~~~l~~~~inI~~i~~~~~~~~--~~~rl 45 (66)
T cd04908 3 QLSVFLENKPGRLAAVTEILSEAGINIRALSIADTSEF--GILRL 45 (66)
T ss_pred EEEEEEcCCCChHHHHHHHHHHCCCCEEEEEEEecCCC--CEEEE
Confidence 57899999999999999999999999999998776663 45555
No 81
>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate. Included in this CD is the C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Also included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem A
Probab=97.23 E-value=0.0011 Score=47.33 Aligned_cols=46 Identities=24% Similarity=0.336 Sum_probs=39.3
Q ss_pred EEEEeCCCccHHHHHHHHHHhCCceEEEEEEeecC-CeeeeEEEEEc
Q 017268 265 LELCTEDRVGLLSDITRIFRENSLSIKRAEISTIG-GKVKDTFYVTD 310 (374)
Q Consensus 265 ieV~~~DRpGLL~~It~~L~~~~i~I~~a~i~T~g-~~~~D~Fyv~d 310 (374)
++|...|+||.|.+++..|.+.|+||.+..+...+ +++.-.|.+.+
T Consensus 1 ~~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~~v~~ 47 (56)
T cd04889 1 LSVFVENKPGRLAEVTEILAEAGINIKAISIAETRGEFGILRLIFSD 47 (56)
T ss_pred CEEEeCCCCChHHHHHHHHHHcCCCEeeEEEEEccCCcEEEEEEECC
Confidence 46789999999999999999999999999988765 66777776644
No 82
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=97.20 E-value=0.0019 Score=62.26 Aligned_cols=69 Identities=12% Similarity=0.196 Sum_probs=50.7
Q ss_pred eEEEEEEeCCccchHHHHHHHHHhcCCeEEEEEEEee--CCeeEEEEEEecCCCCCCCCCHHHHHHHHHHHHHHHcCCC
Q 017268 49 HTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTH--NDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLRGYD 125 (374)
Q Consensus 49 ~~~I~I~~~DrpGL~a~I~~vL~~~glnI~~A~I~T~--~~~~~dvf~V~~~~~g~~~~~~~~~~~l~~~L~~~L~~~~ 125 (374)
...|+|+|+||||+.++++++|+++|+||.+.+.++. ++.+...+.+..+ .+. ..+.|++.|.+ +..+.
T Consensus 7 ~~vitv~G~DrpGIVa~VT~~La~~~vNI~dls~~~~~~~~~F~m~~~~~~p-~~~------~~~~L~~~L~~-l~~~l 77 (286)
T PRK13011 7 TFVLTLSCPSAAGIVAAVTGFLAEHGCYITELHSFDDRLSGRFFMRVEFHSE-EGL------DEDALRAGFAP-IAARF 77 (286)
T ss_pred eEEEEEEeCCCCCHHHHHHHHHHhCCCCEEEeeeeecCCCCeEEEEEEEecC-CCC------CHHHHHHHHHH-HHHHh
Confidence 5689999999999999999999999999999999863 3444455555432 221 13678888877 44333
No 83
>cd04886 ACT_ThrD-II-like C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. This CD includes the C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. The Escherichia coli tdcB gene product, ThrD-II, anaerobically catalyzes the pyridoxal phosphate-dependent dehydration of L-threonine and L-serine to ammonia and to alpha-ketobutyrate and pyruvate, respectively. Tetrameric ThrD-II is subject to allosteric activation by AMP, inhibition by alpha-keto acids, and catabolite inactivation by several metabolites of glycolysis and the citric acid cycle. Also included in this CD are N-terminal ACT domains present in smaller (~170 a.a.) archaeal proteins of unknown function. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.20 E-value=0.0034 Score=46.32 Aligned_cols=34 Identities=21% Similarity=0.269 Sum_probs=30.1
Q ss_pred EEEEeCCCccHHHHHHHHHHhCCceEEEEEEeec
Q 017268 265 LELCTEDRVGLLSDITRIFRENSLSIKRAEISTI 298 (374)
Q Consensus 265 ieV~~~DRpGLL~~It~~L~~~~i~I~~a~i~T~ 298 (374)
+.|..+|+||+|++|+++|++.|++|.+......
T Consensus 1 ~~v~~~d~~G~L~~i~~~i~~~~~nI~~i~~~~~ 34 (73)
T cd04886 1 LRVELPDRPGQLAKLLAVIAEAGANIIEVSHDRA 34 (73)
T ss_pred CEEEeCCCCChHHHHHHHHHHcCCCEEEEEEEec
Confidence 4678999999999999999999999998876643
No 84
>cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH). The C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback-inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.15 E-value=0.0032 Score=46.81 Aligned_cols=47 Identities=23% Similarity=0.282 Sum_probs=37.5
Q ss_pred eEEEEEeCCCccHHHHHHHHHHhCCceEEEEEEeecC--CeeeeEEEEE
Q 017268 263 LELELCTEDRVGLLSDITRIFRENSLSIKRAEISTIG--GKVKDTFYVT 309 (374)
Q Consensus 263 tvieV~~~DRpGLL~~It~~L~~~~i~I~~a~i~T~g--~~~~D~Fyv~ 309 (374)
+.+.|..+|+||.|.++++.|+++|++|.+....... ....-.|.++
T Consensus 2 ~~~~v~~~d~~G~L~~l~~~l~~~~i~i~~~~~~~~~~~~~~~~~i~v~ 50 (69)
T cd04909 2 YDLYVDVPDEPGVIAEVTQILGDAGISIKNIEILEIREGIGGILRISFK 50 (69)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHcCCCceeeEeEEeecCCcEEEEEEEC
Confidence 4678999999999999999999999999998876652 2334456564
No 85
>PRK13562 acetolactate synthase 1 regulatory subunit; Provisional
Probab=97.14 E-value=0.0033 Score=49.10 Aligned_cols=64 Identities=16% Similarity=0.198 Sum_probs=46.0
Q ss_pred EEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecC--CeEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHH
Q 017268 186 VITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGR--TEAYQEFYIRHVDGLPISSEAERERVIQCLEAAI 255 (374)
Q Consensus 186 ~v~V~~~DrpGLl~~i~~~l~~~glnI~~A~i~T~~--g~~~dvF~V~~~~g~~~~~~~~~~~L~~~L~~~L 255 (374)
.+.+...|+||+|++++++|+..|+||.+..+.... |..--++.+.. | ++...+++.+.|.+..
T Consensus 4 ~isvlVeN~~GVL~Rit~lFsRRg~NI~SLtvg~Te~~~iSRmtivv~~--~----d~~~ieqI~kQL~Kli 69 (84)
T PRK13562 4 ILKLQVADQVSTLNRITSAFVRLQYNIDTLHVTHSEQPGISNMEIQVDI--Q----DDTSLHILIKKLKQQI 69 (84)
T ss_pred EEEEEEECCCCHHHHHHHHHhccCcCeeeEEecccCCCCceEEEEEEeC--C----CHHHHHHHHHHHhCCc
Confidence 489999999999999999999999999999997543 32332333321 2 2346677777776543
No 86
>cd04878 ACT_AHAS N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). ACT_AHAS: N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). AHAS catalyses the first common step in the biosynthesis of the three branched-chain amino acids. The first step involves the condensation of either pyruvate or 2-ketobutyrate with the two-carbon hydroxyethyl fragment derived from another pyruvate molecule, covalently bound to the coenzyme thiamine diphosphate. Bacterial AHASs generally consist of regulatory and catalytic subunits. The effector (valine) binding sites are proposed to be located in two symmetrically related positions in the interface between a pair of N-terminal ACT domains with the C-terminal domain of IlvH contacting the catalytic dimer. Plants Arabidopsis and Oryza have tandem IlvH subunits; both the first and second ACT domain sequences are present in this CD. Members of
Probab=97.07 E-value=0.0058 Score=44.91 Aligned_cols=62 Identities=19% Similarity=0.386 Sum_probs=44.8
Q ss_pred EEEEEeCCCccHHHHHHHHHHhCCceEEEEEEeec-CCeeeeEEEEEcCCCCCCChhHHHHHHHHHhh
Q 017268 264 ELELCTEDRVGLLSDITRIFRENSLSIKRAEISTI-GGKVKDTFYVTDVTGNPVDPKIIDSIRRQIGH 330 (374)
Q Consensus 264 vieV~~~DRpGLL~~It~~L~~~~i~I~~a~i~T~-g~~~~D~Fyv~d~~g~~l~~~~~~~l~~~l~~ 330 (374)
.+.+.+.|+||+|.+|+++|+++|++|.+....+. ++.....++..+. + + ..++.+.++|..
T Consensus 2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~---~-~-~~~~~l~~~l~~ 64 (72)
T cd04878 2 TLSVLVENEPGVLNRISGLFARRGFNIESLTVGPTEDPGISRITIVVEG---D-D-DVIEQIVKQLNK 64 (72)
T ss_pred EEEEEEcCCCcHHHHHHHHHHhCCCCEEEEEeeecCCCCeEEEEEEEEC---C-H-HHHHHHHHHHhC
Confidence 57889999999999999999999999999998875 3333333323232 1 2 456666666664
No 87
>cd04905 ACT_CM-PDT C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme. The C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme, found in plants, fungi, bacteria, and archaea. The P-protein of E. coli (CM-PDT, PheA) catalyzes the conversion of chorismate to prephenate and then the decarboxylation and dehydration to form phenylpyruvate. These are the first two steps in the biosynthesis of L-Phe and L-Tyr via the shikimate pathway in microorganisms and plants. The E. coli P-protein (CM-PDT) has three domains with an N-terminal domain with chorismate mutase activity, a middle domain with prephenate dehydratase activity, and an ACT regulatory C-terminal domain. The prephenate dehydratase enzyme has a PDT and ACT domain. The ACT domain is essential to bring about the negative allosteric regulation by L-Phe bindi
Probab=97.05 E-value=0.0054 Score=47.28 Aligned_cols=51 Identities=18% Similarity=0.352 Sum_probs=40.8
Q ss_pred eEEEEEeCCCccHHHHHHHHHHhCCceEEEEEEeecCC-eeeeEEEEEcCCCC
Q 017268 263 LELELCTEDRVGLLSDITRIFRENSLSIKRAEISTIGG-KVKDTFYVTDVTGN 314 (374)
Q Consensus 263 tvieV~~~DRpGLL~~It~~L~~~~i~I~~a~i~T~g~-~~~D~Fyv~d~~g~ 314 (374)
+.+.+..+|+||.|++|.+.|+++|+||.+......+. ...=.|||... |.
T Consensus 2 ~sl~~~~~d~~G~L~~il~~f~~~~ini~~i~s~p~~~~~~~~~f~vd~~-~~ 53 (80)
T cd04905 2 TSIVFTLPNKPGALYDVLGVFAERGINLTKIESRPSKGGLWEYVFFIDFE-GH 53 (80)
T ss_pred EEEEEEECCCCCHHHHHHHHHHHCCcCEEEEEEEEcCCCCceEEEEEEEE-CC
Confidence 45778889999999999999999999999998776643 34557888544 54
No 88
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=97.04 E-value=0.005 Score=45.59 Aligned_cols=39 Identities=15% Similarity=0.266 Sum_probs=35.2
Q ss_pred EEEEEEeCCccchHHHHHHHHHhcCCeEEEEEEEeeCCe
Q 017268 50 TSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDR 88 (374)
Q Consensus 50 ~~I~I~~~DrpGL~a~I~~vL~~~glnI~~A~I~T~~~~ 88 (374)
.+++|..+|+||.|++++.+|+++|+||.+..++..++.
T Consensus 2 ~ri~v~v~d~pG~La~v~~~l~~~~inI~~i~~~~~~~~ 40 (66)
T cd04908 2 KQLSVFLENKPGRLAAVTEILSEAGINIRALSIADTSEF 40 (66)
T ss_pred EEEEEEEcCCCChHHHHHHHHHHCCCCEEEEEEEecCCC
Confidence 468899999999999999999999999999998876654
No 89
>CHL00100 ilvH acetohydroxyacid synthase small subunit
Probab=97.03 E-value=0.004 Score=55.56 Aligned_cols=64 Identities=20% Similarity=0.348 Sum_probs=44.7
Q ss_pred eEEEEEeCCCccHHHHHHHHHHhCCceEEEEEEeecCCeeeeEEEEEcCCCCCCChhHHHHHHHHHhh
Q 017268 263 LELELCTEDRVGLLSDITRIFRENSLSIKRAEISTIGGKVKDTFYVTDVTGNPVDPKIIDSIRRQIGH 330 (374)
Q Consensus 263 tvieV~~~DRpGLL~~It~~L~~~~i~I~~a~i~T~g~~~~D~Fyv~d~~g~~l~~~~~~~l~~~l~~ 330 (374)
..+.|.+.|+||+|++|+.+|+++|+||.++.+..........+.+.-. | ++..+++|+.+|.+
T Consensus 3 ~~isvlv~n~PGVL~RIt~lFsrRg~NIesLsv~~t~~~~~sr~TIvv~-~---~~~~ieqL~kQL~K 66 (174)
T CHL00100 3 HTLSVLVEDESGVLTRIAGLFARRGFNIESLAVGPAEQKGISRITMVVP-G---DDRTIEQLTKQLYK 66 (174)
T ss_pred EEEEEEEeCcCCHHHHHHHHHHhCCCCeeEEEeeEcCCCCccEEEEEEE-C---CHHHHHHHHHHHHH
Confidence 5789999999999999999999999999999996633332223333322 1 12235666666554
No 90
>cd04886 ACT_ThrD-II-like C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. This CD includes the C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. The Escherichia coli tdcB gene product, ThrD-II, anaerobically catalyzes the pyridoxal phosphate-dependent dehydration of L-threonine and L-serine to ammonia and to alpha-ketobutyrate and pyruvate, respectively. Tetrameric ThrD-II is subject to allosteric activation by AMP, inhibition by alpha-keto acids, and catabolite inactivation by several metabolites of glycolysis and the citric acid cycle. Also included in this CD are N-terminal ACT domains present in smaller (~170 a.a.) archaeal proteins of unknown function. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.02 E-value=0.0068 Score=44.65 Aligned_cols=61 Identities=16% Similarity=0.269 Sum_probs=41.7
Q ss_pred EEEEeCCccchHHHHHHHHHhcCCeEEEEEEEeeC-----CeeEEEEEEecCCCCCCCCCHHHHHHHHHHHHH
Q 017268 52 IEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHN-----DRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFN 119 (374)
Q Consensus 52 I~I~~~DrpGL~a~I~~vL~~~glnI~~A~I~T~~-----~~~~dvf~V~~~~~g~~~~~~~~~~~l~~~L~~ 119 (374)
+.|..+|+||+|++|+.+++.+|+||.+....... +.+...|.+.. .+.+.++.+.+.|.+
T Consensus 1 ~~v~~~d~~G~L~~i~~~i~~~~~nI~~i~~~~~~~~~~~~~~~~~i~v~~-------~~~~~l~~l~~~l~~ 66 (73)
T cd04886 1 LRVELPDRPGQLAKLLAVIAEAGANIIEVSHDRAFKTLPLGEVEVELTLET-------RGAEHIEEIIAALRE 66 (73)
T ss_pred CEEEeCCCCChHHHHHHHHHHcCCCEEEEEEEeccCCCCCceEEEEEEEEe-------CCHHHHHHHHHHHHH
Confidence 35788999999999999999999999988766532 23333444432 122455566666654
No 91
>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate. Included in this CD is the C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Also included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem A
Probab=97.01 E-value=0.0026 Score=45.35 Aligned_cols=45 Identities=18% Similarity=0.256 Sum_probs=38.1
Q ss_pred EEEEeCCccchHHHHHHHHHhcCCeEEEEEEEeeC-CeeEEEEEEe
Q 017268 52 IEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHN-DRAAAVVHVT 96 (374)
Q Consensus 52 I~I~~~DrpGL~a~I~~vL~~~glnI~~A~I~T~~-~~~~dvf~V~ 96 (374)
+.|..+|+||.+++++.+|.++|+||....+...+ +.....|.+.
T Consensus 1 ~~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~~v~ 46 (56)
T cd04889 1 LSVFVENKPGRLAEVTEILAEAGINIKAISIAETRGEFGILRLIFS 46 (56)
T ss_pred CEEEeCCCCChHHHHHHHHHHcCCCEeeEEEEEccCCcEEEEEEEC
Confidence 46789999999999999999999999999988876 4555666664
No 92
>PRK06737 acetolactate synthase 1 regulatory subunit; Validated
Probab=97.01 E-value=0.0059 Score=46.96 Aligned_cols=63 Identities=13% Similarity=0.130 Sum_probs=44.9
Q ss_pred eEEEEEeCCCccHHHHHHHHHHhCCceEEEEEEeecCCe-eeeEEEEEcCCCCCCChhHHHHHHHHHhh
Q 017268 263 LELELCTEDRVGLLSDITRIFRENSLSIKRAEISTIGGK-VKDTFYVTDVTGNPVDPKIIDSIRRQIGH 330 (374)
Q Consensus 263 tvieV~~~DRpGLL~~It~~L~~~~i~I~~a~i~T~g~~-~~D~Fyv~d~~g~~l~~~~~~~l~~~l~~ 330 (374)
..|.+...|+||+|.+|+.+|+.+|.||.+..+.-..+. ..-+-.+.. | ++..+++|...|.+
T Consensus 3 ~tisi~v~n~pGVL~Ri~~lf~rRgfNI~Sl~vg~te~~~~sriti~~~--~---~~~~i~qi~kQL~K 66 (76)
T PRK06737 3 HTFSLVIHNDPSVLLRISGIFARRGYYISSLNLNERDTSGVSEMKLTAV--C---TENEATLLVSQLKK 66 (76)
T ss_pred EEEEEEEecCCCHHHHHHHHHhccCcceEEEEecccCCCCeeEEEEEEE--C---CHHHHHHHHHHHhC
Confidence 578999999999999999999999999999998743332 222222212 2 23566777777665
No 93
>PRK08178 acetolactate synthase 1 regulatory subunit; Reviewed
Probab=96.97 E-value=0.015 Score=46.70 Aligned_cols=85 Identities=8% Similarity=0.104 Sum_probs=54.2
Q ss_pred EEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEec-CCeEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHHhhccCCc
Q 017268 184 YTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTG-RTEAYQEFYIRHVDGLPISSEAERERVIQCLEAAIERRASEG 262 (374)
Q Consensus 184 ~t~v~V~~~DrpGLl~~i~~~l~~~glnI~~A~i~T~-~g~~~dvF~V~~~~g~~~~~~~~~~~L~~~L~~~L~~r~~~~ 262 (374)
...+.+...|+||+|++|++.|+..|+||.+..+.-. ...+.- +.+.-. + +...+++.+.|.+..
T Consensus 8 ~~tisvlv~N~pGVL~RIaglFsRRgyNIeSLtvg~te~~~iSR-mtivv~-~-----~~~i~Qi~kQL~KLi------- 73 (96)
T PRK08178 8 NVILELTVRNHPGVMSHVCGLFARRAFNVEGILCLPIQDGDKSR-IWLLVN-D-----DQRLEQMISQIEKLE------- 73 (96)
T ss_pred CEEEEEEEECCcCHHHHHHHHHhcCCcCeeeEEEeecCCCCceE-EEEEEc-C-----chHHHHHHHHHhCCc-------
Confidence 3459999999999999999999999999999888643 322222 222222 1 136777777776533
Q ss_pred eEEEEEeCCCccHHHH-HHHH
Q 017268 263 LELELCTEDRVGLLSD-ITRI 282 (374)
Q Consensus 263 tvieV~~~DRpGLL~~-It~~ 282 (374)
.++.|.-.+.-.++|. +...
T Consensus 74 dVikV~~l~~~~~v~~e~~~~ 94 (96)
T PRK08178 74 DVLKVRRNQSDPTMFNKIAVF 94 (96)
T ss_pred CEEEEEECCCchhHHHHHHHH
Confidence 4566655433334333 4433
No 94
>cd04888 ACT_PheB-BS C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and related domains. This CD includes the C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and other related ACT domains. In B. subtilis, the upstream gene of pheB, pheA encodes prephenate dehydratase (PDT). The presumed product of the pheB gene is chorismate mutase (CM). The deduced product of the B. subtilis pheB gene, however, has no significant homology to the CM portion of the bifunctional CM-PDT of Escherichia coli. The presence of an ACT domain lends support to the prediction that these proteins function as a phenylalanine-binding regulatory protein. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.94 E-value=0.0083 Score=45.23 Aligned_cols=63 Identities=19% Similarity=0.205 Sum_probs=46.1
Q ss_pred EEEEEeCCCccHHHHHHHHHHhCCceEEEEEEeec-CCeeeeEEEEEcCCCCCCChhHHHHHHHHHhh
Q 017268 264 ELELCTEDRVGLLSDITRIFRENSLSIKRAEISTI-GGKVKDTFYVTDVTGNPVDPKIIDSIRRQIGH 330 (374)
Q Consensus 264 vieV~~~DRpGLL~~It~~L~~~~i~I~~a~i~T~-g~~~~D~Fyv~d~~g~~l~~~~~~~l~~~l~~ 330 (374)
.+.|.+.||||+|++|++.|+++|++|......+. ++.+.-.|-+...+. +.+++.|.++|..
T Consensus 2 ~l~i~~~d~~g~l~~I~~~la~~~inI~~i~~~~~~~~~~~i~~~v~v~~~----~~~l~~l~~~L~~ 65 (76)
T cd04888 2 TLSLLLEHRPGVLSKVLNTIAQVRGNVLTINQNIPIHGRANVTISIDTSTM----NGDIDELLEELRE 65 (76)
T ss_pred EEEEEecCCCchHHHHHHHHHHcCCCEEEEEeCCCCCCeEEEEEEEEcCch----HHHHHHHHHHHhc
Confidence 57899999999999999999999999999987553 244555555533210 1266777777764
No 95
>cd04877 ACT_TyrR N-terminal ACT domain of the TyrR protein. ACT_TyrR: N-terminal ACT domain of the TyrR protein. The TyrR protein of Escherichia coli controls the expression of a group of transcription units (TyrR regulon) whose gene products are involved in the biosynthesis or transport of the aromatic amino acids. Binding to specific DNA sequences known as TyrR boxes, the TyrR protein can either activate or repress transcription at different sigma70 promoters. Its regulatory activity occurs in response to intracellular levels of tyrosine, phenylalanine and tryptophan. The TyrR protein consists of an N-terminal region important for transcription activation with an ATP-independent aromatic amino acid binding site (contained within the ACT domain) and is involved in dimerization; a central region with an ATP binding site, an ATP-dependent aromatic amino acid binding site and is involved in hexamerization; and a helix turn helix DNA binding C-terminal region. In solution, in the absence
Probab=96.93 E-value=0.0046 Score=46.94 Aligned_cols=37 Identities=8% Similarity=0.084 Sum_probs=33.6
Q ss_pred EEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCe
Q 017268 186 VITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGRTE 223 (374)
Q Consensus 186 ~v~V~~~DrpGLl~~i~~~l~~~glnI~~A~i~T~~g~ 223 (374)
.+.|.+.||+|++++|+.++++.|+||.+..+.+. +.
T Consensus 2 ~l~I~~~dr~Gll~dI~~~i~~~~~nI~~~~~~~~-~~ 38 (74)
T cd04877 2 RLEITCEDRLGITQEVLDLLVEHNIDLRGIEIDPK-GR 38 (74)
T ss_pred EEEEEEEccchHHHHHHHHHHHCCCceEEEEEecC-Ce
Confidence 37899999999999999999999999999999776 44
No 96
>cd04879 ACT_3PGDH-like ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). ACT_3PGDH-like: The ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with or without an extended C-terminal (xct) region found in various bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback controlled by the end product L-serine in an allosteric manner. In the Escherichia coli homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active
Probab=96.93 E-value=0.0065 Score=44.43 Aligned_cols=44 Identities=18% Similarity=0.305 Sum_probs=37.7
Q ss_pred EEEEeCCCccHHHHHHHHHHhCCceEEEEEEeecC--CeeeeEEEE
Q 017268 265 LELCTEDRVGLLSDITRIFRENSLSIKRAEISTIG--GKVKDTFYV 308 (374)
Q Consensus 265 ieV~~~DRpGLL~~It~~L~~~~i~I~~a~i~T~g--~~~~D~Fyv 308 (374)
+.|.+.|+||+|.+|+++|+++|++|.+..+...+ +...-.|.+
T Consensus 2 l~v~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~~~~~~~~~v 47 (71)
T cd04879 2 LLIVHKDVPGVIGKVGTILGEHGINIAAMQVGRKEKGGIAYMVLDV 47 (71)
T ss_pred EEEEecCCCCHHHHHHHHHHhcCCCeeeEEEeccCCCCEEEEEEEc
Confidence 67899999999999999999999999999988765 455556656
No 97
>COG0788 PurU Formyltetrahydrofolate hydrolase [Nucleotide transport and metabolism]
Probab=96.91 E-value=0.0046 Score=58.10 Aligned_cols=66 Identities=15% Similarity=0.224 Sum_probs=47.4
Q ss_pred CEEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEec--CCeEEEEEEEEeCCCCCCCCHHHHHHHHHHHHH
Q 017268 183 DYTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTG--RTEAYQEFYIRHVDGLPISSEAERERVIQCLEA 253 (374)
Q Consensus 183 ~~t~v~V~~~DrpGLl~~i~~~l~~~glnI~~A~i~T~--~g~~~dvF~V~~~~g~~~~~~~~~~~L~~~L~~ 253 (374)
..+++++.|+|++||++.|++.|+++|+||.++..++. .|++.-.-..... +.+. ..+.+++.+..
T Consensus 6 ~~~~LtvsCpd~~GiVaais~~l~~~g~NI~~~~qf~D~~~g~FFmR~~f~~~-~~~~----~~~~l~~~f~~ 73 (287)
T COG0788 6 DTFILTVSCPDQPGIVAAISGFLAEHGCNIVDSDQFDDPETGRFFMRVEFEGE-GGPL----DREALRAAFAP 73 (287)
T ss_pred cceEEEEecCCCCCcHHHHHHHHHHcCCceeecccccccccCeEEEEEEEecC-CCcc----cHHHHHHHHHH
Confidence 45789999999999999999999999999999999963 4555433333332 2222 34555555554
No 98
>COG0788 PurU Formyltetrahydrofolate hydrolase [Nucleotide transport and metabolism]
Probab=96.89 E-value=0.0043 Score=58.29 Aligned_cols=69 Identities=17% Similarity=0.369 Sum_probs=48.9
Q ss_pred CeEEEEEEeCCccchHHHHHHHHHhcCCeEEEEEEEee--CCeeEEEEEEecCCCCCCCCCHHHHHHHHHHHHHHHcC
Q 017268 48 EHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTH--NDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLRG 123 (374)
Q Consensus 48 ~~~~I~I~~~DrpGL~a~I~~vL~~~glnI~~A~I~T~--~~~~~dvf~V~~~~~g~~~~~~~~~~~l~~~L~~~L~~ 123 (374)
....+++.|+|++|+.++|++.|+.+||||.++..++. ++++..-..... .+.+. ..+.+++.+.. +.+
T Consensus 6 ~~~~LtvsCpd~~GiVaais~~l~~~g~NI~~~~qf~D~~~g~FFmR~~f~~--~~~~~----~~~~l~~~f~~-~a~ 76 (287)
T COG0788 6 DTFILTVSCPDQPGIVAAISGFLAEHGCNIVDSDQFDDPETGRFFMRVEFEG--EGGPL----DREALRAAFAP-LAE 76 (287)
T ss_pred cceEEEEecCCCCCcHHHHHHHHHHcCCceeecccccccccCeEEEEEEEec--CCCcc----cHHHHHHHHHH-HHH
Confidence 46799999999999999999999999999999999963 344443211111 23332 23567777776 444
No 99
>cd04881 ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) and related domains. The ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) encoded by the hom gene of Bacillus subtilis and other related sequences. HSDH reduces aspartate semi-aldehyde to the amino acid homoserine, one that is required for the biosynthesis of Met, Thr, and Ile from Asp. Neither the enzyme nor the aspartate pathway is found in the animal kingdom. This mostly bacterial HSDH group has a C-terminal ACT domain and is believed to be involved in enzyme regulation. A C-terminal deletion in the Corynebacterium glutamicum HSDH abolished allosteric inhibition by L-threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.87 E-value=0.0091 Score=44.68 Aligned_cols=64 Identities=23% Similarity=0.329 Sum_probs=44.3
Q ss_pred eEEEEEeCCCccHHHHHHHHHHhCCceEEEEEEeecCC-eeeeEEEEEcCCCCCCChhHHHHHHHHHhh
Q 017268 263 LELELCTEDRVGLLSDITRIFRENSLSIKRAEISTIGG-KVKDTFYVTDVTGNPVDPKIIDSIRRQIGH 330 (374)
Q Consensus 263 tvieV~~~DRpGLL~~It~~L~~~~i~I~~a~i~T~g~-~~~D~Fyv~d~~g~~l~~~~~~~l~~~l~~ 330 (374)
+.+.|.+.|+||+|.+|++.|+++|++|..+...+..+ ......+++.. .+..+++++.+.|..
T Consensus 1 ~yl~i~~~d~~g~l~~i~~~l~~~~i~I~~~~~~~~~~~~~~~~~i~~~~----~~~~~l~~~i~~L~~ 65 (79)
T cd04881 1 YYLRLTVKDKPGVLAKITGILAEHGISIESVIQKEADGGETAPVVIVTHE----TSEAALNAALAEIEA 65 (79)
T ss_pred CEEEEEeCCCCcHHHHHHHHHHHcCCCeEEEEEcccCCCCceeEEEEEcc----CCHHHHHHHHHHHHc
Confidence 35789999999999999999999999999998765432 22222223222 134566666666654
No 100
>PRK13562 acetolactate synthase 1 regulatory subunit; Provisional
Probab=96.80 E-value=0.0069 Score=47.36 Aligned_cols=65 Identities=15% Similarity=0.152 Sum_probs=47.1
Q ss_pred eEEEEEeCCCccHHHHHHHHHHhCCceEEEEEEeecCCeeeeEEEEEcCCCCCCChhHHHHHHHHHhh
Q 017268 263 LELELCTEDRVGLLSDITRIFRENSLSIKRAEISTIGGKVKDTFYVTDVTGNPVDPKIIDSIRRQIGH 330 (374)
Q Consensus 263 tvieV~~~DRpGLL~~It~~L~~~~i~I~~a~i~T~g~~~~D~Fyv~d~~g~~l~~~~~~~l~~~l~~ 330 (374)
.++.+...|+||+|.+|+..|.++|+||.++.+........-.+-+.-..| ++..++++...|.+
T Consensus 3 ~~isvlVeN~~GVL~Rit~lFsRRg~NI~SLtvg~Te~~~iSRmtivv~~~---d~~~ieqI~kQL~K 67 (84)
T PRK13562 3 RILKLQVADQVSTLNRITSAFVRLQYNIDTLHVTHSEQPGISNMEIQVDIQ---DDTSLHILIKKLKQ 67 (84)
T ss_pred EEEEEEEECCCCHHHHHHHHHhccCcCeeeEEecccCCCCceEEEEEEeCC---CHHHHHHHHHHHhC
Confidence 468899999999999999999999999999998765544333332222112 23566777777765
No 101
>PRK08178 acetolactate synthase 1 regulatory subunit; Reviewed
Probab=96.77 E-value=0.009 Score=47.89 Aligned_cols=65 Identities=22% Similarity=0.362 Sum_probs=46.1
Q ss_pred CCeEEEEEEeCCccchHHHHHHHHHhcCCeEEEEEEEeeCC-eeEEEEEEecCCCCCCCCCHHHHHHHHHHHHH
Q 017268 47 EEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHND-RAAAVVHVTDHSTGYAIKDPKRLSTIKELLFN 119 (374)
Q Consensus 47 ~~~~~I~I~~~DrpGL~a~I~~vL~~~glnI~~A~I~T~~~-~~~dvf~V~~~~~g~~~~~~~~~~~l~~~L~~ 119 (374)
.+...|.++..|+||.|++|+++|+..|.||.+-.+.-++. ++.-+..+.. + + ..++.|.+.|.+
T Consensus 6 ~~~~tisvlv~N~pGVL~RIaglFsRRgyNIeSLtvg~te~~~iSRmtivv~---~----~-~~i~Qi~kQL~K 71 (96)
T PRK08178 6 HDNVILELTVRNHPGVMSHVCGLFARRAFNVEGILCLPIQDGDKSRIWLLVN---D----D-QRLEQMISQIEK 71 (96)
T ss_pred CCCEEEEEEEECCcCHHHHHHHHHhcCCcCeeeEEEeecCCCCceEEEEEEc---C----c-hHHHHHHHHHhC
Confidence 34567999999999999999999999999999887766543 3332222221 1 1 355666666666
No 102
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.74 E-value=0.0073 Score=43.94 Aligned_cols=36 Identities=22% Similarity=0.242 Sum_probs=31.6
Q ss_pred EEEEEeCCCccHHHHHHHHHHhCCceEEEEEEeecC
Q 017268 264 ELELCTEDRVGLLSDITRIFRENSLSIKRAEISTIG 299 (374)
Q Consensus 264 vieV~~~DRpGLL~~It~~L~~~~i~I~~a~i~T~g 299 (374)
++.|..+|+||-|.+++..|+++|+||.+......+
T Consensus 1 ~i~v~~~d~pG~L~~i~~~l~~~~~nI~~i~~~~~~ 36 (65)
T cd04882 1 VLAVEVPDKPGGLHEILQILSEEGINIEYMYAFVEK 36 (65)
T ss_pred CEEEEeCCCCcHHHHHHHHHHHCCCChhheEEEccC
Confidence 467899999999999999999999999988865543
No 103
>TIGR00119 acolac_sm acetolactate synthase, small subunit. acetohydroxyacid synthase is a synonym.
Probab=96.72 E-value=0.011 Score=51.98 Aligned_cols=68 Identities=22% Similarity=0.418 Sum_probs=50.7
Q ss_pred eEEEEEeCCCccHHHHHHHHHHhCCceEEEEEEeecCCe--eeeEEEEEcCCCCCCChhHHHHHHHHHhhhhccccc
Q 017268 263 LELELCTEDRVGLLSDITRIFRENSLSIKRAEISTIGGK--VKDTFYVTDVTGNPVDPKIIDSIRRQIGHTKLQVKR 337 (374)
Q Consensus 263 tvieV~~~DRpGLL~~It~~L~~~~i~I~~a~i~T~g~~--~~D~Fyv~d~~g~~l~~~~~~~l~~~l~~~~~~~~~ 337 (374)
.+++|...|+||.|.+|+..|+++|+||.+..+...++. ..-+|.|. | ++..+++|...|.+ +...-+
T Consensus 2 ~~isI~ven~pGvL~rI~~lf~rrg~NI~Sl~v~~t~~~~~sriti~V~---~---d~~~i~qi~kQl~K-li~V~~ 71 (157)
T TIGR00119 2 HILSVLVENEPGVLSRVAGLFTRRGFNIESLTVGPTEDPDLSRMTIVVV---G---DDKVLEQITKQLNK-LVDVIK 71 (157)
T ss_pred EEEEEEEcCCCcHHHHHHHHHHhCCceEEEEEEeecCCCCEEEEEEEEE---C---CHHHHHHHHHHHhc-CccEEE
Confidence 478999999999999999999999999999988766533 33344442 2 24567888888876 444443
No 104
>cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH). The C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback-inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.68 E-value=0.014 Score=43.22 Aligned_cols=47 Identities=11% Similarity=0.080 Sum_probs=36.8
Q ss_pred EEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecC-C-eEEEEEEEE
Q 017268 185 TVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGR-T-EAYQEFYIR 231 (374)
Q Consensus 185 t~v~V~~~DrpGLl~~i~~~l~~~glnI~~A~i~T~~-g-~~~dvF~V~ 231 (374)
..+.+..+|+||.|++++++|+++|+||......... + ...-.+.+.
T Consensus 2 ~~~~v~~~d~~G~L~~l~~~l~~~~i~i~~~~~~~~~~~~~~~~~i~v~ 50 (69)
T cd04909 2 YDLYVDVPDEPGVIAEVTQILGDAGISIKNIEILEIREGIGGILRISFK 50 (69)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHcCCCceeeEeEEeecCCcEEEEEEEC
Confidence 4578899999999999999999999999988776642 2 333345554
No 105
>PRK06737 acetolactate synthase 1 regulatory subunit; Validated
Probab=96.68 E-value=0.011 Score=45.39 Aligned_cols=62 Identities=5% Similarity=0.116 Sum_probs=44.2
Q ss_pred EEEEEEeCCccchHHHHHHHHHhcCCeEEEEEEEeeC-CeeEE-EEEEecCCCCCCCCCHHHHHHHHHHHHH
Q 017268 50 TSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHN-DRAAA-VVHVTDHSTGYAIKDPKRLSTIKELLFN 119 (374)
Q Consensus 50 ~~I~I~~~DrpGL~a~I~~vL~~~glnI~~A~I~T~~-~~~~d-vf~V~~~~~g~~~~~~~~~~~l~~~L~~ 119 (374)
..+.+...|+||.|++|+++|+..|+||.+-.+.-+. .+..- ++.+. | +++..+.|.+.|.+
T Consensus 3 ~tisi~v~n~pGVL~Ri~~lf~rRgfNI~Sl~vg~te~~~~sriti~~~----~----~~~~i~qi~kQL~K 66 (76)
T PRK06737 3 HTFSLVIHNDPSVLLRISGIFARRGYYISSLNLNERDTSGVSEMKLTAV----C----TENEATLLVSQLKK 66 (76)
T ss_pred EEEEEEEecCCCHHHHHHHHHhccCcceEEEEecccCCCCeeEEEEEEE----C----CHHHHHHHHHHHhC
Confidence 4689999999999999999999999999987776443 34432 33332 2 22455666666655
No 106
>cd04903 ACT_LSD C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit. The C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit, found in various bacterial anaerobes such as Clostridium, Bacillis, and Treponema species. These enzymes catalyze the deamination of L-serine, producing pyruvate and ammonia. Unlike the eukaryotic L-serine dehydratase, which requires the pyridoxal-5'-phosphate (PLP) cofactor, the prokaryotic L-serine dehydratase contains an [4Fe-4S] cluster instead of a PLP active site. The LSD alpha and beta subunits of the 'clostridial' enzyme are encoded by the sdhA and sdhB genes. The single subunit bacterial homologs of L-serine dehydratase (LSD1, LSD2, TdcG) present in Escherichia coli, and other enterobacterials, lack the ACT domain described here. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.66 E-value=0.012 Score=43.14 Aligned_cols=33 Identities=18% Similarity=0.428 Sum_probs=30.6
Q ss_pred EEEEeCCCccHHHHHHHHHHhCCceEEEEEEee
Q 017268 265 LELCTEDRVGLLSDITRIFRENSLSIKRAEIST 297 (374)
Q Consensus 265 ieV~~~DRpGLL~~It~~L~~~~i~I~~a~i~T 297 (374)
+.+.+.|+||.|.+|++.|+++|++|.+.....
T Consensus 2 l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~ 34 (71)
T cd04903 2 LIVVHKDKPGAIAKVTSVLADHEINIAFMRVSR 34 (71)
T ss_pred EEEEeCCCCChHHHHHHHHHHcCcCeeeeEEEe
Confidence 678999999999999999999999999998765
No 107
>cd04879 ACT_3PGDH-like ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). ACT_3PGDH-like: The ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with or without an extended C-terminal (xct) region found in various bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback controlled by the end product L-serine in an allosteric manner. In the Escherichia coli homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active
Probab=96.64 E-value=0.012 Score=42.89 Aligned_cols=45 Identities=16% Similarity=0.129 Sum_probs=38.8
Q ss_pred EEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecC--CeEEEEEEEE
Q 017268 187 ITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGR--TEAYQEFYIR 231 (374)
Q Consensus 187 v~V~~~DrpGLl~~i~~~l~~~glnI~~A~i~T~~--g~~~dvF~V~ 231 (374)
+.+.+.|++|++++++.+|+++|+||.+......+ +...-.|.+.
T Consensus 2 l~v~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~~~~~~~~~v~ 48 (71)
T cd04879 2 LLIVHKDVPGVIGKVGTILGEHGINIAAMQVGRKEKGGIAYMVLDVD 48 (71)
T ss_pred EEEEecCCCCHHHHHHHHHHhcCCCeeeEEEeccCCCCEEEEEEEcC
Confidence 67889999999999999999999999999988754 6666667773
No 108
>cd04881 ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) and related domains. The ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) encoded by the hom gene of Bacillus subtilis and other related sequences. HSDH reduces aspartate semi-aldehyde to the amino acid homoserine, one that is required for the biosynthesis of Met, Thr, and Ile from Asp. Neither the enzyme nor the aspartate pathway is found in the animal kingdom. This mostly bacterial HSDH group has a C-terminal ACT domain and is believed to be involved in enzyme regulation. A C-terminal deletion in the Corynebacterium glutamicum HSDH abolished allosteric inhibition by L-threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.64 E-value=0.016 Score=43.29 Aligned_cols=46 Identities=24% Similarity=0.377 Sum_probs=35.7
Q ss_pred EEEEEeCCccchHHHHHHHHHhcCCeEEEEEEEeeCC-eeEEEEEEe
Q 017268 51 SIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHND-RAAAVVHVT 96 (374)
Q Consensus 51 ~I~I~~~DrpGL~a~I~~vL~~~glnI~~A~I~T~~~-~~~dvf~V~ 96 (374)
-|.|.+.|+||++++++.+|+.+|+||.+....+..+ +......++
T Consensus 2 yl~i~~~d~~g~l~~i~~~l~~~~i~I~~~~~~~~~~~~~~~~~i~~ 48 (79)
T cd04881 2 YLRLTVKDKPGVLAKITGILAEHGISIESVIQKEADGGETAPVVIVT 48 (79)
T ss_pred EEEEEeCCCCcHHHHHHHHHHHcCCCeEEEEEcccCCCCceeEEEEE
Confidence 3778899999999999999999999999888766432 434333333
No 109
>CHL00100 ilvH acetohydroxyacid synthase small subunit
Probab=96.64 E-value=0.0099 Score=53.07 Aligned_cols=64 Identities=9% Similarity=0.084 Sum_probs=47.2
Q ss_pred EEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEe--cCCeEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHH
Q 017268 185 TVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNT--GRTEAYQEFYIRHVDGLPISSEAERERVIQCLEAAI 255 (374)
Q Consensus 185 t~v~V~~~DrpGLl~~i~~~l~~~glnI~~A~i~T--~~g~~~dvF~V~~~~g~~~~~~~~~~~L~~~L~~~L 255 (374)
..+.+.+.|+||+|++++++|+.+|+||.+..+.. ..|.. .+.+.-+.+ +...++|++.|.+..
T Consensus 3 ~~isvlv~n~PGVL~RIt~lFsrRg~NIesLsv~~t~~~~~s--r~TIvv~~~-----~~~ieqL~kQL~KLi 68 (174)
T CHL00100 3 HTLSVLVEDESGVLTRIAGLFARRGFNIESLAVGPAEQKGIS--RITMVVPGD-----DRTIEQLTKQLYKLV 68 (174)
T ss_pred EEEEEEEeCcCCHHHHHHHHHHhCCCCeeEEEeeEcCCCCcc--EEEEEEECC-----HHHHHHHHHHHHHHh
Confidence 35899999999999999999999999999999975 23433 333333322 224678888877764
No 110
>cd04902 ACT_3PGDH-xct C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). The C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with an extended C-terminal (xct) region from bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. Some 3PGDH enzymes have an additional domain formed by an extended C-terminal region. This additional domain introduces significant asymmetry to the homotetramer. Adjacent ACT (regulatory) domains interact, creating two serine-binding sites, however, this asymmetric arrangement results in the formation of two different and distinct domain interfaces between iden
Probab=96.62 E-value=0.0091 Score=44.50 Aligned_cols=44 Identities=23% Similarity=0.395 Sum_probs=35.2
Q ss_pred EEEEeCCCccHHHHHHHHHHhCCceEEEEEEeec--CCeeeeEEEE
Q 017268 265 LELCTEDRVGLLSDITRIFRENSLSIKRAEISTI--GGKVKDTFYV 308 (374)
Q Consensus 265 ieV~~~DRpGLL~~It~~L~~~~i~I~~a~i~T~--g~~~~D~Fyv 308 (374)
+-+..+|+||.+++|++.|+++|+||.+...... ++.+.-+|.+
T Consensus 2 l~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~i~v 47 (73)
T cd04902 2 LVVRNTDRPGVIGKVGTILGEAGINIAGMQVGRDEPGGEALMVLSV 47 (73)
T ss_pred EEEEeCCCCCHHHHHHHHHHHcCcChhheEeeccCCCCEEEEEEEe
Confidence 4568999999999999999999999999887553 3455555555
No 111
>PRK11895 ilvH acetolactate synthase 3 regulatory subunit; Reviewed
Probab=96.57 E-value=0.023 Score=50.12 Aligned_cols=71 Identities=20% Similarity=0.368 Sum_probs=50.8
Q ss_pred eEEEEEeCCCccHHHHHHHHHHhCCceEEEEEEeecCC--eeeeEEEEEcCCCCCCChhHHHHHHHHHhhhhcccccccc
Q 017268 263 LELELCTEDRVGLLSDITRIFRENSLSIKRAEISTIGG--KVKDTFYVTDVTGNPVDPKIIDSIRRQIGHTKLQVKRSTI 340 (374)
Q Consensus 263 tvieV~~~DRpGLL~~It~~L~~~~i~I~~a~i~T~g~--~~~D~Fyv~d~~g~~l~~~~~~~l~~~l~~~~~~~~~~~~ 340 (374)
.+++|...|+||.|++|+..|+++|+||.+..+....+ ...-+|.+. | ++..++++...|.+ +...-+-..
T Consensus 3 ~~IsV~veN~pGvL~rI~~lf~rrg~NI~Sl~v~~te~~~~sriti~V~---~---~~~~i~qi~kQl~K-LidV~~V~~ 75 (161)
T PRK11895 3 HTLSVLVENEPGVLSRVAGLFSRRGYNIESLTVGPTEDPGLSRMTIVTS---G---DEQVIEQITKQLNK-LIDVLKVVD 75 (161)
T ss_pred EEEEEEEcCCCcHHHHHHHHHHhCCCcEEEEEeeecCCCCEEEEEEEEE---C---CHHHHHHHHHHHhc-cccEEEEEe
Confidence 47899999999999999999999999999998765542 233344442 2 24567788877776 444444333
No 112
>cd04888 ACT_PheB-BS C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and related domains. This CD includes the C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and other related ACT domains. In B. subtilis, the upstream gene of pheB, pheA encodes prephenate dehydratase (PDT). The presumed product of the pheB gene is chorismate mutase (CM). The deduced product of the B. subtilis pheB gene, however, has no significant homology to the CM portion of the bifunctional CM-PDT of Escherichia coli. The presence of an ACT domain lends support to the prediction that these proteins function as a phenylalanine-binding regulatory protein. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.56 E-value=0.018 Score=43.30 Aligned_cols=62 Identities=15% Similarity=0.186 Sum_probs=45.3
Q ss_pred EEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEec-CCeEEEEEEEEeCCCCCCCCHHHHHHHHHHHH
Q 017268 186 VITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTG-RTEAYQEFYIRHVDGLPISSEAERERVIQCLE 252 (374)
Q Consensus 186 ~v~V~~~DrpGLl~~i~~~l~~~glnI~~A~i~T~-~g~~~dvF~V~~~~g~~~~~~~~~~~L~~~L~ 252 (374)
.+.+.+.|+||++++++++++++|+||......+. ++.+.-.|.+...+. +..++++.++|.
T Consensus 2 ~l~i~~~d~~g~l~~I~~~la~~~inI~~i~~~~~~~~~~~i~~~v~v~~~-----~~~l~~l~~~L~ 64 (76)
T cd04888 2 TLSLLLEHRPGVLSKVLNTIAQVRGNVLTINQNIPIHGRANVTISIDTSTM-----NGDIDELLEELR 64 (76)
T ss_pred EEEEEecCCCchHHHHHHHHHHcCCCEEEEEeCCCCCCeEEEEEEEEcCch-----HHHHHHHHHHHh
Confidence 47899999999999999999999999999877553 466655566654321 125566655554
No 113
>TIGR00119 acolac_sm acetolactate synthase, small subunit. acetohydroxyacid synthase is a synonym.
Probab=96.45 E-value=0.024 Score=49.81 Aligned_cols=62 Identities=19% Similarity=0.282 Sum_probs=46.8
Q ss_pred EEEEEEeCCccchHHHHHHHHHhcCCeEEEEEEEeeC-CeeE-EEEEEecCCCCCCCCCHHHHHHHHHHHHH
Q 017268 50 TSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHN-DRAA-AVVHVTDHSTGYAIKDPKRLSTIKELLFN 119 (374)
Q Consensus 50 ~~I~I~~~DrpGL~a~I~~vL~~~glnI~~A~I~T~~-~~~~-dvf~V~~~~~g~~~~~~~~~~~l~~~L~~ 119 (374)
..++|...|+||.|++|+++|+.+|+||.+-.+...+ ++.. .++.|. + ++...+.|.+.|.+
T Consensus 2 ~~isI~ven~pGvL~rI~~lf~rrg~NI~Sl~v~~t~~~~~sriti~V~----~----d~~~i~qi~kQl~K 65 (157)
T TIGR00119 2 HILSVLVENEPGVLSRVAGLFTRRGFNIESLTVGPTEDPDLSRMTIVVV----G----DDKVLEQITKQLNK 65 (157)
T ss_pred EEEEEEEcCCCcHHHHHHHHHHhCCceEEEEEEeecCCCCEEEEEEEEE----C----CHHHHHHHHHHHhc
Confidence 4688999999999999999999999999998888765 3444 445553 2 12455667777766
No 114
>cd04874 ACT_Af1403 N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, and related domains. This CD includes the N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, from Archaeoglobus fulgidus and other related archeal ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.44 E-value=0.028 Score=41.25 Aligned_cols=35 Identities=26% Similarity=0.370 Sum_probs=31.9
Q ss_pred EEEEEeCCCccHHHHHHHHHHhCCceEEEEEEeec
Q 017268 264 ELELCTEDRVGLLSDITRIFRENSLSIKRAEISTI 298 (374)
Q Consensus 264 vieV~~~DRpGLL~~It~~L~~~~i~I~~a~i~T~ 298 (374)
.+.+.++|+||.|++|++.|++++++|.+....+.
T Consensus 2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~ 36 (72)
T cd04874 2 ALSIIAEDKPGVLRDLTGVIAEHGGNITYTQQFIE 36 (72)
T ss_pred eEEEEeCCCCChHHHHHHHHHhCCCCEEEEEEecc
Confidence 47889999999999999999999999998887665
No 115
>cd04903 ACT_LSD C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit. The C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit, found in various bacterial anaerobes such as Clostridium, Bacillis, and Treponema species. These enzymes catalyze the deamination of L-serine, producing pyruvate and ammonia. Unlike the eukaryotic L-serine dehydratase, which requires the pyridoxal-5'-phosphate (PLP) cofactor, the prokaryotic L-serine dehydratase contains an [4Fe-4S] cluster instead of a PLP active site. The LSD alpha and beta subunits of the 'clostridial' enzyme are encoded by the sdhA and sdhB genes. The single subunit bacterial homologs of L-serine dehydratase (LSD1, LSD2, TdcG) present in Escherichia coli, and other enterobacterials, lack the ACT domain described here. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.43 E-value=0.023 Score=41.54 Aligned_cols=46 Identities=15% Similarity=0.215 Sum_probs=36.2
Q ss_pred EEEEeCCCcchHHHHHHHHHhCCceEEEEEEEec--CCeEEEEEEEEe
Q 017268 187 ITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTG--RTEAYQEFYIRH 232 (374)
Q Consensus 187 v~V~~~DrpGLl~~i~~~l~~~glnI~~A~i~T~--~g~~~dvF~V~~ 232 (374)
+.+.++|+||.+++++.+|+++|+||........ ++.+.-.+.+.+
T Consensus 2 l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~~~~~~~~~i~i~v~~ 49 (71)
T cd04903 2 LIVVHKDKPGAIAKVTSVLADHEINIAFMRVSRKEKGDQALMVIEVDQ 49 (71)
T ss_pred EEEEeCCCCChHHHHHHHHHHcCcCeeeeEEEeccCCCeEEEEEEeCC
Confidence 5788999999999999999999999998887763 345444444443
No 116
>PRK11895 ilvH acetolactate synthase 3 regulatory subunit; Reviewed
Probab=96.42 E-value=0.027 Score=49.72 Aligned_cols=62 Identities=13% Similarity=0.240 Sum_probs=46.4
Q ss_pred EEEEEEeCCccchHHHHHHHHHhcCCeEEEEEEEeeC-CeeE-EEEEEecCCCCCCCCCHHHHHHHHHHHHH
Q 017268 50 TSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHN-DRAA-AVVHVTDHSTGYAIKDPKRLSTIKELLFN 119 (374)
Q Consensus 50 ~~I~I~~~DrpGL~a~I~~vL~~~glnI~~A~I~T~~-~~~~-dvf~V~~~~~g~~~~~~~~~~~l~~~L~~ 119 (374)
..+.|...|+||.|++|+++|+.+|+||.+-.+.... ++.. .++.|.. ++..++.+.+.|.+
T Consensus 3 ~~IsV~veN~pGvL~rI~~lf~rrg~NI~Sl~v~~te~~~~sriti~V~~--------~~~~i~qi~kQl~K 66 (161)
T PRK11895 3 HTLSVLVENEPGVLSRVAGLFSRRGYNIESLTVGPTEDPGLSRMTIVTSG--------DEQVIEQITKQLNK 66 (161)
T ss_pred EEEEEEEcCCCcHHHHHHHHHHhCCCcEEEEEeeecCCCCEEEEEEEEEC--------CHHHHHHHHHHHhc
Confidence 4689999999999999999999999999998877664 3444 4454432 22455666666666
No 117
>cd04874 ACT_Af1403 N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, and related domains. This CD includes the N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, from Archaeoglobus fulgidus and other related archeal ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.41 E-value=0.026 Score=41.44 Aligned_cols=47 Identities=11% Similarity=0.103 Sum_probs=37.3
Q ss_pred EEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEec-CCeEEEEEEEEe
Q 017268 186 VITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTG-RTEAYQEFYIRH 232 (374)
Q Consensus 186 ~v~V~~~DrpGLl~~i~~~l~~~glnI~~A~i~T~-~g~~~dvF~V~~ 232 (374)
.+.+.++|+||.|++++..|+++++||.+....+. ++...-.+.+.+
T Consensus 2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~~ 49 (72)
T cd04874 2 ALSIIAEDKPGVLRDLTGVIAEHGGNITYTQQFIEREGKARIYMELEG 49 (72)
T ss_pred eEEEEeCCCCChHHHHHHHHHhCCCCEEEEEEeccCCCeEEEEEEEec
Confidence 47889999999999999999999999998888765 344443444543
No 118
>cd04878 ACT_AHAS N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). ACT_AHAS: N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). AHAS catalyses the first common step in the biosynthesis of the three branched-chain amino acids. The first step involves the condensation of either pyruvate or 2-ketobutyrate with the two-carbon hydroxyethyl fragment derived from another pyruvate molecule, covalently bound to the coenzyme thiamine diphosphate. Bacterial AHASs generally consist of regulatory and catalytic subunits. The effector (valine) binding sites are proposed to be located in two symmetrically related positions in the interface between a pair of N-terminal ACT domains with the C-terminal domain of IlvH contacting the catalytic dimer. Plants Arabidopsis and Oryza have tandem IlvH subunits; both the first and second ACT domain sequences are present in this CD. Members of
Probab=96.38 E-value=0.033 Score=40.75 Aligned_cols=45 Identities=11% Similarity=0.261 Sum_probs=36.4
Q ss_pred EEEEEeCCccchHHHHHHHHHhcCCeEEEEEEEee-CCeeE-EEEEE
Q 017268 51 SIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTH-NDRAA-AVVHV 95 (374)
Q Consensus 51 ~I~I~~~DrpGL~a~I~~vL~~~glnI~~A~I~T~-~~~~~-dvf~V 95 (374)
.+.+.+.|+||++++|+.+|+.+|+||.+....+. +++.. ..|.+
T Consensus 2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~ 48 (72)
T cd04878 2 TLSVLVENEPGVLNRISGLFARRGFNIESLTVGPTEDPGISRITIVV 48 (72)
T ss_pred EEEEEEcCCCcHHHHHHHHHHhCCCCEEEEEeeecCCCCeEEEEEEE
Confidence 46789999999999999999999999999988775 44444 34444
No 119
>PRK11152 ilvM acetolactate synthase 2 regulatory subunit; Provisional
Probab=96.34 E-value=0.027 Score=43.33 Aligned_cols=61 Identities=15% Similarity=0.260 Sum_probs=45.5
Q ss_pred eEEEEEeCCCccHHHHHHHHHHhCCceEEEEEEeec--CCeeeeEEEEEcCCCCCCChhHHHHHHHHHhh
Q 017268 263 LELELCTEDRVGLLSDITRIFRENSLSIKRAEISTI--GGKVKDTFYVTDVTGNPVDPKIIDSIRRQIGH 330 (374)
Q Consensus 263 tvieV~~~DRpGLL~~It~~L~~~~i~I~~a~i~T~--g~~~~D~Fyv~d~~g~~l~~~~~~~l~~~l~~ 330 (374)
+.+.+...++||.|.+|+..|..+|.||++..+.-. ++...-++-+ . + +..+++|...|.+
T Consensus 4 ~~lsi~v~n~pGVL~Ri~~lf~rRGfnI~sl~v~~t~~~~~sriti~v-~-~-----~~~i~ql~kQL~K 66 (76)
T PRK11152 4 HQLTIKARFRPEVLERVLRVVRHRGFQVCSMNMTQNTDAQNINIELTV-A-S-----ERPIDLLSSQLNK 66 (76)
T ss_pred EEEEEEEECCccHHHHHHHHHhcCCeeeeeEEeeecCCCCEEEEEEEE-C-C-----CchHHHHHHHHhc
Confidence 578999999999999999999999999999998763 3334445544 2 1 2345666666554
No 120
>cd04901 ACT_3PGDH C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. The C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In Escherichia coli, the SerA 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. In the homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active site is postulated to involve the tethering of the regulatory domains together to create a rigid quaternary structure with a solvent-
Probab=96.32 E-value=0.0047 Score=45.70 Aligned_cols=46 Identities=20% Similarity=0.149 Sum_probs=37.3
Q ss_pred EEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEEe
Q 017268 187 ITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRH 232 (374)
Q Consensus 187 v~V~~~DrpGLl~~i~~~l~~~glnI~~A~i~T~~g~~~dvF~V~~ 232 (374)
+.+.+.|+||++++++.+++++|+||......+.++.+.-.|.+..
T Consensus 2 ~~~~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~a~~~~~~~~ 47 (69)
T cd04901 2 ILHIHKNVPGVLGQINTILAEHNINIAAQYLQTRGEIGYVVIDIDS 47 (69)
T ss_pred EEEEecCCCcHHHHHHHHHHHcCCCHHHHhccCCCCEEEEEEEcCC
Confidence 5678999999999999999999999988766555566665665544
No 121
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.31 E-value=0.019 Score=41.71 Aligned_cols=44 Identities=16% Similarity=0.153 Sum_probs=34.8
Q ss_pred EEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecC--CeEEEEEEE
Q 017268 187 ITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGR--TEAYQEFYI 230 (374)
Q Consensus 187 v~V~~~DrpGLl~~i~~~l~~~glnI~~A~i~T~~--g~~~dvF~V 230 (374)
+.+..+|+||-|++++.+|+++|+||.+....... +...-.|.+
T Consensus 2 i~v~~~d~pG~L~~i~~~l~~~~~nI~~i~~~~~~~~~~~~v~~~v 47 (65)
T cd04882 2 LAVEVPDKPGGLHEILQILSEEGINIEYMYAFVEKKGGKALLIFRT 47 (65)
T ss_pred EEEEeCCCCcHHHHHHHHHHHCCCChhheEEEccCCCCeEEEEEEe
Confidence 67889999999999999999999999888765543 444434444
No 122
>cd04901 ACT_3PGDH C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. The C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In Escherichia coli, the SerA 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. In the homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active site is postulated to involve the tethering of the regulatory domains together to create a rigid quaternary structure with a solvent-
Probab=96.29 E-value=0.0052 Score=45.42 Aligned_cols=44 Identities=18% Similarity=0.221 Sum_probs=35.1
Q ss_pred EEEEeCCCccHHHHHHHHHHhCCceEEEEEEeecCCeeeeEEEE
Q 017268 265 LELCTEDRVGLLSDITRIFRENSLSIKRAEISTIGGKVKDTFYV 308 (374)
Q Consensus 265 ieV~~~DRpGLL~~It~~L~~~~i~I~~a~i~T~g~~~~D~Fyv 308 (374)
+-+.+.|+||+|.+|+..|++.|+||.+....+.++.+.-.|.+
T Consensus 2 ~~~~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~a~~~~~~ 45 (69)
T cd04901 2 ILHIHKNVPGVLGQINTILAEHNINIAAQYLQTRGEIGYVVIDI 45 (69)
T ss_pred EEEEecCCCcHHHHHHHHHHHcCCCHHHHhccCCCCEEEEEEEc
Confidence 45689999999999999999999999888776655555444444
No 123
>cd04876 ACT_RelA-SpoT ACT domain found C-terminal of the RelA/SpoT domains. ACT_RelA-SpoT: the ACT domain found C-terminal of the RelA/SpoT domains. Enzymes of the Rel/Spo family enable bacteria to survive prolonged periods of nutrient limitation by controlling guanosine-3'-diphosphate-5'-(tri)diphosphate ((p)ppGpp) production and subsequent rRNA repression (stringent response). Both the synthesis of (p)ppGpp from ATP and GDP(GTP), and its hydrolysis to GDP(GTP) and pyrophosphate, are catalyzed by Rel/Spo proteins. In Escherichia coli and its close relatives, the metabolism of (p)ppGpp is governed by two homologous proteins, RelA and SpoT. The RelA protein catalyzes (p)ppGpp synthesis in a reaction requiring its binding to ribosomes bearing codon-specified uncharged tRNA. The major role of the SpoT protein is the breakdown of (p)ppGpp by a manganese-dependent (p)ppGpp pyrophosphohydrolase activity. Although the stringent response appears to be tightly regulated by these two enzymes i
Probab=96.28 E-value=0.042 Score=39.04 Aligned_cols=61 Identities=25% Similarity=0.327 Sum_probs=43.1
Q ss_pred EEEEeCCCccHHHHHHHHHHhCCceEEEEEEeecC-CeeeeEEEEEcCCCCCCChhHHHHHHHHHhh
Q 017268 265 LELCTEDRVGLLSDITRIFRENSLSIKRAEISTIG-GKVKDTFYVTDVTGNPVDPKIIDSIRRQIGH 330 (374)
Q Consensus 265 ieV~~~DRpGLL~~It~~L~~~~i~I~~a~i~T~g-~~~~D~Fyv~d~~g~~l~~~~~~~l~~~l~~ 330 (374)
|.|.+.|+||++.+|+..|.+++++|....+...+ +...-.|.+... +...++.+.+.|..
T Consensus 1 l~v~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~l~~ 62 (71)
T cd04876 1 IRVEAIDRPGLLADITTVIAEEKINILSVNTRTDDDGLATIRLTLEVR-----DLEHLARIMRKLRQ 62 (71)
T ss_pred CEEEEeccCcHHHHHHHHHHhCCCCEEEEEeEECCCCEEEEEEEEEEC-----CHHHHHHHHHHHhC
Confidence 46889999999999999999999999999988765 223333333222 23456666666653
No 124
>cd04902 ACT_3PGDH-xct C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). The C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with an extended C-terminal (xct) region from bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. Some 3PGDH enzymes have an additional domain formed by an extended C-terminal region. This additional domain introduces significant asymmetry to the homotetramer. Adjacent ACT (regulatory) domains interact, creating two serine-binding sites, however, this asymmetric arrangement results in the formation of two different and distinct domain interfaces between iden
Probab=96.24 E-value=0.021 Score=42.52 Aligned_cols=46 Identities=17% Similarity=0.196 Sum_probs=37.9
Q ss_pred EEEEeCCCcchHHHHHHHHHhCCceEEEEEEEe--cCCeEEEEEEEEe
Q 017268 187 ITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNT--GRTEAYQEFYIRH 232 (374)
Q Consensus 187 v~V~~~DrpGLl~~i~~~l~~~glnI~~A~i~T--~~g~~~dvF~V~~ 232 (374)
+.+..+|+||.+++++++|+++|+||.+..... .++...-+|.+..
T Consensus 2 l~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~i~v~~ 49 (73)
T cd04902 2 LVVRNTDRPGVIGKVGTILGEAGINIAGMQVGRDEPGGEALMVLSVDE 49 (73)
T ss_pred EEEEeCCCCCHHHHHHHHHHHcCcChhheEeeccCCCCEEEEEEEeCC
Confidence 456899999999999999999999999888765 3567776676654
No 125
>PRK11152 ilvM acetolactate synthase 2 regulatory subunit; Provisional
Probab=96.15 E-value=0.042 Score=42.25 Aligned_cols=62 Identities=13% Similarity=0.170 Sum_probs=45.9
Q ss_pred EEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEe-cC-CeEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHH
Q 017268 185 TVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNT-GR-TEAYQEFYIRHVDGLPISSEAERERVIQCLEAA 254 (374)
Q Consensus 185 t~v~V~~~DrpGLl~~i~~~l~~~glnI~~A~i~T-~~-g~~~dvF~V~~~~g~~~~~~~~~~~L~~~L~~~ 254 (374)
..+.+...|+||.|++++++|+..|+||.+..+.. .+ +..--++.|. + +...+.|.+.|.+.
T Consensus 4 ~~lsi~v~n~pGVL~Ri~~lf~rRGfnI~sl~v~~t~~~~~sriti~v~--~------~~~i~ql~kQL~KL 67 (76)
T PRK11152 4 HQLTIKARFRPEVLERVLRVVRHRGFQVCSMNMTQNTDAQNINIELTVA--S------ERPIDLLSSQLNKL 67 (76)
T ss_pred EEEEEEEECCccHHHHHHHHHhcCCeeeeeEEeeecCCCCEEEEEEEEC--C------CchHHHHHHHHhcC
Confidence 35899999999999999999999999999999975 33 4444444442 2 23566777776553
No 126
>PRK08577 hypothetical protein; Provisional
Probab=96.11 E-value=0.11 Score=44.35 Aligned_cols=75 Identities=15% Similarity=0.128 Sum_probs=51.0
Q ss_pred CEEEEEc-C--CCCEEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEec--CCeEEEEEEEEeCCCCCCCCHHHHHHH
Q 017268 173 PQVTVLN-I--EKDYTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTG--RTEAYQEFYIRHVDGLPISSEAERERV 247 (374)
Q Consensus 173 ~~V~i~~-~--~~~~t~v~V~~~DrpGLl~~i~~~l~~~glnI~~A~i~T~--~g~~~dvF~V~~~~g~~~~~~~~~~~L 247 (374)
..+.+.+ . ....+.+.+.+.|+||+|++++++|+++|+||.+....+. ++.+.-.|.+.-++. +..++.+
T Consensus 42 ~~~~~~~~~~~~k~~~~I~V~~~Dr~GvLa~I~~~l~~~~inI~~i~~~~~~~~~~~~i~l~vev~~~-----~~~l~~l 116 (136)
T PRK08577 42 KEIHLEPIALPGKKLVEIELVVEDRPGVLAKITGLLAEHGVDILATECEELKRGELAECVIIVDLSKS-----DIDLEEL 116 (136)
T ss_pred CEEEEEEcCCCCccEEEEEEEEcCCCCHHHHHHHHHHHCCCCEEEEEEEEecCCCEEEEEEEEEeCCc-----hhhHHHH
Confidence 3455555 3 3347789999999999999999999999999999888764 344444444443321 1234555
Q ss_pred HHHHH
Q 017268 248 IQCLE 252 (374)
Q Consensus 248 ~~~L~ 252 (374)
.+.|.
T Consensus 117 ~~~L~ 121 (136)
T PRK08577 117 EEELK 121 (136)
T ss_pred HHHHH
Confidence 55554
No 127
>cd04884 ACT_CBS C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This CD includes the C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This protein has two N-terminal tandem CBS domains and a single C-terminal ACT domain. The CBS domain is found in a wide range of proteins, often in tandem arrangements and together with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.11 E-value=0.036 Score=41.63 Aligned_cols=34 Identities=21% Similarity=0.214 Sum_probs=30.4
Q ss_pred EEEEeCCCccHHHHHHHHHHhCCceEEEEEEeec
Q 017268 265 LELCTEDRVGLLSDITRIFRENSLSIKRAEISTI 298 (374)
Q Consensus 265 ieV~~~DRpGLL~~It~~L~~~~i~I~~a~i~T~ 298 (374)
+.|..+|+||-|.++++.|+++|+||.+......
T Consensus 2 l~v~~~d~pG~L~~l~~~i~~~g~nI~~i~~~~~ 35 (72)
T cd04884 2 FTFLLEDKPGTLKPVVDTLREFNARIISILTAFE 35 (72)
T ss_pred EEEEecCCCccHHHHHHHHHHCCCeEEEEEeccc
Confidence 6788999999999999999999999998876554
No 128
>cd02116 ACT ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. Members of this CD belong to the superfamily of ACT regulatory domains. Pairs of ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. The ACT domain has been detected in a number of diverse proteins; some of these proteins are involved in amino acid and purine biosynthesis, phenylalanine hydroxylation, regulation of bacterial metabolism and transcription, and many remain to be characterized. ACT domain-containing enzymes involved in amino acid and purine synthesis are in many cases allosteric enzymes with complex regulation enforced by the binding of ligands. The ACT domain is commonly involved in the binding of a small regulatory molecule, such as the amino acids L-Ser and L-Phe in the case of D-3-phosphoglycerate dehydrogenase and the bifunctional chorismate mutase-p
Probab=96.08 E-value=0.04 Score=37.11 Aligned_cols=35 Identities=31% Similarity=0.509 Sum_probs=31.7
Q ss_pred EEEEeCCCccHHHHHHHHHHhCCceEEEEEEeecC
Q 017268 265 LELCTEDRVGLLSDITRIFRENSLSIKRAEISTIG 299 (374)
Q Consensus 265 ieV~~~DRpGLL~~It~~L~~~~i~I~~a~i~T~g 299 (374)
|.+.++|+||++.+|+.+|+++|++|..+......
T Consensus 1 i~i~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~~ 35 (60)
T cd02116 1 LTVSGPDRPGLLAKVLSVLAEAGINITSIEQRTSG 35 (60)
T ss_pred CEEEecCCCchHHHHHHHHHHCCCcEEEEEeEEcC
Confidence 46889999999999999999999999999987654
No 129
>PRK07431 aspartate kinase; Provisional
Probab=96.06 E-value=0.9 Score=48.25 Aligned_cols=168 Identities=17% Similarity=0.194 Sum_probs=102.3
Q ss_pred eCCccchHHHHHHHHHhcCCeEEEEEEEeeCC-eeEEEEEEecCCCCCCCCCHHHHHHHHHHHHHHHcCCCccccccccc
Q 017268 56 GTDRPGLFSEVCAVLADLHCNVVNAEIWTHND-RAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLRGYDDFRKAKTSL 134 (374)
Q Consensus 56 ~~DrpGL~a~I~~vL~~~glnI~~A~I~T~~~-~~~dvf~V~~~~~g~~~~~~~~~~~l~~~L~~~L~~~~~~~~~~~~l 134 (374)
..+.+|++++|...|+.+|+||.--......+ .....|.|... ...+..+.|.+ +..+..
T Consensus 278 ~~~~~g~~a~if~~l~~~~I~v~~i~qs~~~~~~~~isf~i~~~----------d~~~~~~~l~~-l~~~~~-------- 338 (587)
T PRK07431 278 VPDRPGIAAQLFEELAAQGVNVDLIIQSIHEGNSNDIAFTVAEN----------ELKKAEAVAEA-IAPALG-------- 338 (587)
T ss_pred CCCcccHHHHHHHHHHHcCCcEEEEEeccCCCCCccEEEEEeHH----------HHHHHHHHHHH-HHHHcC--------
Confidence 46889999999999999999998554333222 23456777431 11222222332 221110
Q ss_pred CCCCCCcchhhhhhhcccCchhhhhhhhccccCCCCCCCEEEEEcCCCCEEEEEEEeC---CCcchHHHHHHHHHhCCce
Q 017268 135 SPPGIMNRERRLHQIMFDDRDYERVEKAVGRVEDKSSRPQVTVLNIEKDYTVITMRSK---DRPKLLFDIVCTLTDMQYV 211 (374)
Q Consensus 135 ~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~t~v~V~~~---DrpGLl~~i~~~l~~~gln 211 (374)
...+.+ ..+...|.+.+. +.+|+++++..+|++.|++
T Consensus 339 -------------------------------------~~~i~~---~~~~a~IsvvG~gm~~~~gi~~ki~~aL~~~~I~ 378 (587)
T PRK07431 339 -------------------------------------GAEVLV---ETNVAKLSISGAGMMGRPGIAAKMFDTLAEAGIN 378 (587)
T ss_pred -------------------------------------CCcEEE---eCCeEEEEEECCCcccCccHHHHHHHHHHHCCCc
Confidence 001122 124566777774 7999999999999999999
Q ss_pred EEEEEEEecCCeEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHHh----hc-c-------C-----------CceEEEE-
Q 017268 212 VFHGMVNTGRTEAYQEFYIRHVDGLPISSEAERERVIQCLEAAIE----RR-A-------S-----------EGLELEL- 267 (374)
Q Consensus 212 I~~A~i~T~~g~~~dvF~V~~~~g~~~~~~~~~~~L~~~L~~~L~----~r-~-------~-----------~~tvieV- 267 (374)
|.... + .+. .-.|.|.. ...++..+.|++.+. +. . + .-..|+|
T Consensus 379 i~~i~--s-Se~-~Is~vv~~---------~d~~~av~~Lh~~f~~~~~~~~~~~~~~~~~~~~v~gIa~~~~~~~i~l~ 445 (587)
T PRK07431 379 IRMIS--T-SEV-KVSCVIDA---------EDGDKALRAVCEAFELEDSQIEINPTASGQDEPEVRGVALDRNQAQLAIR 445 (587)
T ss_pred EEEEE--c-CCC-EEEEEEcH---------HHHHHHHHHHHHHhccCCcccccCccccCCCCCcEEEEEccCCEEEEEEC
Confidence 96544 2 222 22244433 234455555655541 10 0 0 0124444
Q ss_pred EeCCCccHHHHHHHHHHhCCceEEEEEE
Q 017268 268 CTEDRVGLLSDITRIFRENSLSIKRAEI 295 (374)
Q Consensus 268 ~~~DRpGLL~~It~~L~~~~i~I~~a~i 295 (374)
...+.||++++|...|+++|++|.....
T Consensus 446 ~~~~~~g~~a~if~~l~~~~i~id~i~~ 473 (587)
T PRK07431 446 NVPDRPGMAASIFGALAEANISVDMIVQ 473 (587)
T ss_pred CCCCCccHHHHHHHHHHHcCCeEEEEEe
Confidence 3568899999999999999999998854
No 130
>cd04904 ACT_AAAH ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe; TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines; and TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxy
Probab=95.96 E-value=0.044 Score=41.70 Aligned_cols=49 Identities=20% Similarity=0.342 Sum_probs=38.8
Q ss_pred EEEEEeCCCccHHHHHHHHHHhCCceEEEEEEeecCCe-eeeEEEEEcCCC
Q 017268 264 ELELCTEDRVGLLSDITRIFRENSLSIKRAEISTIGGK-VKDTFYVTDVTG 313 (374)
Q Consensus 264 vieV~~~DRpGLL~~It~~L~~~~i~I~~a~i~T~g~~-~~D~Fyv~d~~g 313 (374)
.|-+..+|+||-|+++...|+.+|||+.+..-...... -.=.||| |.+|
T Consensus 2 sl~f~l~~~pG~L~~vL~~f~~~~iNlt~IeSRP~~~~~~~y~Ffv-d~~~ 51 (74)
T cd04904 2 SLIFSLKEEVGALARALKLFEEFGVNLTHIESRPSRRNGSEYEFFV-DCEV 51 (74)
T ss_pred EEEEEeCCCCcHHHHHHHHHHHCCCcEEEEECCCCCCCCceEEEEE-EEEc
Confidence 34556689999999999999999999999988776544 4557777 4446
No 131
>PRK08577 hypothetical protein; Provisional
Probab=95.95 E-value=0.076 Score=45.33 Aligned_cols=43 Identities=23% Similarity=0.474 Sum_probs=38.1
Q ss_pred cCCCCeEEEEEEeCCccchHHHHHHHHHhcCCeEEEEEEEeeC
Q 017268 44 MPTEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHN 86 (374)
Q Consensus 44 ~~~~~~~~I~I~~~DrpGL~a~I~~vL~~~glnI~~A~I~T~~ 86 (374)
.+....+.|.|.+.|+||+|++|+.+|+.+|+||.+....+..
T Consensus 51 ~~~k~~~~I~V~~~Dr~GvLa~I~~~l~~~~inI~~i~~~~~~ 93 (136)
T PRK08577 51 LPGKKLVEIELVVEDRPGVLAKITGLLAEHGVDILATECEELK 93 (136)
T ss_pred CCCccEEEEEEEEcCCCCHHHHHHHHHHHCCCCEEEEEEEEec
Confidence 4555688999999999999999999999999999998887754
No 132
>cd04880 ACT_AAAH-PDT-like ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. Eukaryotic AAAHs have an N-terminal ACT (regulatory) domain, a middle catalytic domain and a C-terminal domain which is responsible for the oligomeric state of the enzyme forming a domain-swapped tetrameric coiled-coil. The PAH, TH, and TPH enzymes contain highly conserved catalytic domains but distinct N-terminal ACT domains and differ in their mech
Probab=95.92 E-value=0.067 Score=40.44 Aligned_cols=64 Identities=16% Similarity=0.280 Sum_probs=44.1
Q ss_pred EEEEeCCCccHHHHHHHHHHhCCceEEEEEEeecCC-eeeeEEEEEcCCCCCCChhHHHHHHHHHhh
Q 017268 265 LELCTEDRVGLLSDITRIFRENSLSIKRAEISTIGG-KVKDTFYVTDVTGNPVDPKIIDSIRRQIGH 330 (374)
Q Consensus 265 ieV~~~DRpGLL~~It~~L~~~~i~I~~a~i~T~g~-~~~D~Fyv~d~~g~~l~~~~~~~l~~~l~~ 330 (374)
+-+...|+||-|++|...|+++|+||.+....-... ...=.|||.- .|.. .+...+.+-+.|..
T Consensus 2 l~~~l~d~pG~L~~vL~~f~~~~vni~~I~Srp~~~~~~~~~f~id~-~~~~-~~~~~~~~l~~l~~ 66 (75)
T cd04880 2 LVFSLKNKPGALAKALKVFAERGINLTKIESRPSRKGLWEYEFFVDF-EGHI-DDPDVKEALEELKR 66 (75)
T ss_pred EEEEeCCcCCHHHHHHHHHHHCCCCEEEEEeeecCCCCceEEEEEEE-ECCC-CCHHHHHHHHHHHH
Confidence 345568999999999999999999999997665443 5566788844 3542 22344444444443
No 133
>cd04884 ACT_CBS C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This CD includes the C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This protein has two N-terminal tandem CBS domains and a single C-terminal ACT domain. The CBS domain is found in a wide range of proteins, often in tandem arrangements and together with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.88 E-value=0.061 Score=40.31 Aligned_cols=34 Identities=21% Similarity=0.236 Sum_probs=30.2
Q ss_pred EEEEeCCCcchHHHHHHHHHhCCceEEEEEEEec
Q 017268 187 ITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTG 220 (374)
Q Consensus 187 v~V~~~DrpGLl~~i~~~l~~~glnI~~A~i~T~ 220 (374)
+.+..+|+||-|++++.+++++|+||.+......
T Consensus 2 l~v~~~d~pG~L~~l~~~i~~~g~nI~~i~~~~~ 35 (72)
T cd04884 2 FTFLLEDKPGTLKPVVDTLREFNARIISILTAFE 35 (72)
T ss_pred EEEEecCCCccHHHHHHHHHHCCCeEEEEEeccc
Confidence 6788999999999999999999999998876543
No 134
>PRK06635 aspartate kinase; Reviewed
Probab=95.80 E-value=0.34 Score=48.87 Aligned_cols=102 Identities=15% Similarity=0.208 Sum_probs=67.8
Q ss_pred EEEEEEE-eCCCcchHHHHHHHHHhCCceEEEEEEEecC-CeEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHH---Hhhc
Q 017268 184 YTVITMR-SKDRPKLLFDIVCTLTDMQYVVFHGMVNTGR-TEAYQEFYIRHVDGLPISSEAERERVIQCLEAA---IERR 258 (374)
Q Consensus 184 ~t~v~V~-~~DrpGLl~~i~~~l~~~glnI~~A~i~T~~-g~~~dvF~V~~~~g~~~~~~~~~~~L~~~L~~~---L~~r 258 (374)
...|++. ..++||.++++..+|++.|+||......... |...-.|.|... ..++..+.|.+. +..+
T Consensus 262 v~~Isv~g~~~~~g~l~~i~~~L~~~~I~i~~is~s~~~~~~~~is~~v~~~---------~~~~a~~~L~~~~~~~~~~ 332 (404)
T PRK06635 262 EAKVTVVGVPDKPGIAAQIFGALAEANINVDMIVQNVSEDGKTDITFTVPRD---------DLEKALELLEEVKDEIGAE 332 (404)
T ss_pred eEEEEECCCCCCccHHHHHHHHHHHcCCeEEEEEecCCCCCceeEEEEEcHH---------HHHHHHHHHHHHHHHcCcc
Confidence 4445554 4678999999999999999999965443222 244445666432 223333444432 1111
Q ss_pred ----cCCceEEEEEe---CCCccHHHHHHHHHHhCCceEEEEE
Q 017268 259 ----ASEGLELELCT---EDRVGLLSDITRIFRENSLSIKRAE 294 (374)
Q Consensus 259 ----~~~~tvieV~~---~DRpGLL~~It~~L~~~~i~I~~a~ 294 (374)
...-.+++|.+ .|+||++++|.++|++.|++|....
T Consensus 333 ~i~~~~~ia~isvvG~~~~~~~g~~a~i~~~La~~~Ini~~i~ 375 (404)
T PRK06635 333 SVTYDDDIAKVSVVGVGMRSHPGVAAKMFEALAEEGINIQMIS 375 (404)
T ss_pred eEEEcCCeEEEEEECCCCCCCchHHHHHHHHHHHCCCCEEEEE
Confidence 12245688866 6999999999999999999998863
No 135
>cd04931 ACT_PAH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe. In PAH, an autoregulatory sequence, N-terminal of the ACT domain, extends across the catalytic domain active site and regulates the enzyme by intrasteric regulation. It appears that the activation by L-Phe induces a conformational change that converts the enzyme to a high-affinity and high-activity state. Modulation of activity is achieved through inhibition by BH4 and activation by phosphorylation of serine residues of the autoregulatory region. The molecular basis for the cooperative activation process is not fully understood yet. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.74 E-value=0.068 Score=42.47 Aligned_cols=51 Identities=18% Similarity=0.391 Sum_probs=41.2
Q ss_pred eEEEEEeCCCccHHHHHHHHHHhCCceEEEEEEeecCCe-eeeEEEEEcCCCC
Q 017268 263 LELELCTEDRVGLLSDITRIFRENSLSIKRAEISTIGGK-VKDTFYVTDVTGN 314 (374)
Q Consensus 263 tvieV~~~DRpGLL~~It~~L~~~~i~I~~a~i~T~g~~-~~D~Fyv~d~~g~ 314 (374)
+.|-+..+|+||-|+++...|+++|||+.+..-.-.... -.=.|||. .+|.
T Consensus 15 tslif~l~~~pGsL~~vL~~Fa~~~INLt~IeSRP~~~~~~~Y~FfVD-ieg~ 66 (90)
T cd04931 15 ISLIFSLKEEVGALAKVLRLFEEKDINLTHIESRPSRLNKDEYEFFIN-LDKK 66 (90)
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEEE-EEcC
Confidence 566777799999999999999999999999998776544 34578884 4565
No 136
>cd04876 ACT_RelA-SpoT ACT domain found C-terminal of the RelA/SpoT domains. ACT_RelA-SpoT: the ACT domain found C-terminal of the RelA/SpoT domains. Enzymes of the Rel/Spo family enable bacteria to survive prolonged periods of nutrient limitation by controlling guanosine-3'-diphosphate-5'-(tri)diphosphate ((p)ppGpp) production and subsequent rRNA repression (stringent response). Both the synthesis of (p)ppGpp from ATP and GDP(GTP), and its hydrolysis to GDP(GTP) and pyrophosphate, are catalyzed by Rel/Spo proteins. In Escherichia coli and its close relatives, the metabolism of (p)ppGpp is governed by two homologous proteins, RelA and SpoT. The RelA protein catalyzes (p)ppGpp synthesis in a reaction requiring its binding to ribosomes bearing codon-specified uncharged tRNA. The major role of the SpoT protein is the breakdown of (p)ppGpp by a manganese-dependent (p)ppGpp pyrophosphohydrolase activity. Although the stringent response appears to be tightly regulated by these two enzymes i
Probab=95.71 E-value=0.1 Score=36.95 Aligned_cols=45 Identities=27% Similarity=0.502 Sum_probs=35.8
Q ss_pred EEEEeCCccchHHHHHHHHHhcCCeEEEEEEEeeCCeeE-EEEEEe
Q 017268 52 IEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAA-AVVHVT 96 (374)
Q Consensus 52 I~I~~~DrpGL~a~I~~vL~~~glnI~~A~I~T~~~~~~-dvf~V~ 96 (374)
|.|.++|+||.++.++..|..++++|.+..+...++... ..|.+.
T Consensus 1 l~v~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~ 46 (71)
T cd04876 1 IRVEAIDRPGLLADITTVIAEEKINILSVNTRTDDDGLATIRLTLE 46 (71)
T ss_pred CEEEEeccCcHHHHHHHHHHhCCCCEEEEEeEECCCCEEEEEEEEE
Confidence 467899999999999999999999999998877653333 344443
No 137
>PF13710 ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B.
Probab=95.70 E-value=0.059 Score=39.80 Aligned_cols=54 Identities=24% Similarity=0.488 Sum_probs=37.2
Q ss_pred CCccHHHHHHHHHHhCCceEEEEEEeecC--CeeeeEEEEEcCCCCCCChhHHHHHHHHHhh
Q 017268 271 DRVGLLSDITRIFRENSLSIKRAEISTIG--GKVKDTFYVTDVTGNPVDPKIIDSIRRQIGH 330 (374)
Q Consensus 271 DRpGLL~~It~~L~~~~i~I~~a~i~T~g--~~~~D~Fyv~d~~g~~l~~~~~~~l~~~l~~ 330 (374)
|+||+|.+|+..|..+|+||+++.+.... +...-++-+. |. +..+++|...|.+
T Consensus 1 n~~GvL~Ri~~vf~rRg~nI~sl~v~~~~~~~~~riti~v~---~~---~~~i~~l~~Ql~K 56 (63)
T PF13710_consen 1 NQPGVLNRITGVFRRRGFNIESLSVGPTEDPGISRITIVVS---GD---DREIEQLVKQLEK 56 (63)
T ss_dssp SSTTHHHHHHHHHHTTT-EECEEEEEE-SSTTEEEEEEEEE---S----CCHHHHHHHHHHC
T ss_pred CCcHHHHHHHHHHhcCCeEEeeEEeeecCCCCEEEEEEEEe---eC---chhHHHHHHHHhc
Confidence 78999999999999999999999998843 3344444332 21 2345667766665
No 138
>PRK04435 hypothetical protein; Provisional
Probab=95.67 E-value=0.11 Score=45.10 Aligned_cols=70 Identities=19% Similarity=0.218 Sum_probs=50.3
Q ss_pred cCCCCeEEEEEEeCCccchHHHHHHHHHhcCCeEEEEEEEeeCCe-eEEEEEEecCCCCCCCCCHHHHHHHHHHHHH
Q 017268 44 MPTEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDR-AAAVVHVTDHSTGYAIKDPKRLSTIKELLFN 119 (374)
Q Consensus 44 ~~~~~~~~I~I~~~DrpGL~a~I~~vL~~~glnI~~A~I~T~~~~-~~dvf~V~~~~~g~~~~~~~~~~~l~~~L~~ 119 (374)
...+....|.+...|+||++++|+.+++.+|+||..-......++ +...|.|... +. ...++.|-+.|++
T Consensus 64 ~~~~r~vtL~i~l~Dr~GlLs~Il~~IA~~~aNIltI~q~i~~~g~a~vs~tVevs--~~----~~~L~~Li~~L~~ 134 (147)
T PRK04435 64 MVKGKIITLSLLLEDRSGTLSKVLNVIAEAGGNILTINQSIPLQGRANVTISIDTS--SM----EGDIDELLEKLRN 134 (147)
T ss_pred cCCCcEEEEEEEEecCCCHHHHHHHHHHHcCCCeEEEEEEcCCCCEEEEEEEEEeC--Ch----HHHHHHHHHHHHc
Confidence 457788899999999999999999999999999998876554433 4455666431 11 1245556555554
No 139
>PRK04435 hypothetical protein; Provisional
Probab=95.61 E-value=0.11 Score=45.05 Aligned_cols=68 Identities=10% Similarity=0.131 Sum_probs=50.1
Q ss_pred CCCCEEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEec-CCeEEEEEEEEeCCCCCCCCHHHHHHHHHHHH
Q 017268 180 IEKDYTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTG-RTEAYQEFYIRHVDGLPISSEAERERVIQCLE 252 (374)
Q Consensus 180 ~~~~~t~v~V~~~DrpGLl~~i~~~l~~~glnI~~A~i~T~-~g~~~dvF~V~~~~g~~~~~~~~~~~L~~~L~ 252 (374)
.......+.+.+.|+||+|++|+.+++++|+||........ +|.+.-.|.+...+. ...++.|.+.|.
T Consensus 65 ~~~r~vtL~i~l~Dr~GlLs~Il~~IA~~~aNIltI~q~i~~~g~a~vs~tVevs~~-----~~~L~~Li~~L~ 133 (147)
T PRK04435 65 VKGKIITLSLLLEDRSGTLSKVLNVIAEAGGNILTINQSIPLQGRANVTISIDTSSM-----EGDIDELLEKLR 133 (147)
T ss_pred CCCcEEEEEEEEecCCCHHHHHHHHHHHcCCCeEEEEEEcCCCCEEEEEEEEEeCCh-----HHHHHHHHHHHH
Confidence 34567789999999999999999999999999998887654 566666666655321 124555555554
No 140
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.59 E-value=0.061 Score=40.00 Aligned_cols=46 Identities=26% Similarity=0.372 Sum_probs=35.5
Q ss_pred eEEEEEeCCCccHHHHHHHHHHhCCceEEEEEEeec--CCeeeeEEEE
Q 017268 263 LELELCTEDRVGLLSDITRIFRENSLSIKRAEISTI--GGKVKDTFYV 308 (374)
Q Consensus 263 tvieV~~~DRpGLL~~It~~L~~~~i~I~~a~i~T~--g~~~~D~Fyv 308 (374)
+.+.+..+|+||.|.+++++|+++|+||.++...-. ++...=.|.+
T Consensus 2 ~~~~v~~~d~pG~l~~i~~~l~~~~inI~~i~~~~~~~~~~~~v~i~v 49 (72)
T cd04883 2 SQIEVRVPDRPGQLADIAAIFKDRGVNIVSVLVYPSKEEDNKILVFRV 49 (72)
T ss_pred cEEEEEECCCCCHHHHHHHHHHHcCCCEEEEEEeccCCCCeEEEEEEE
Confidence 468899999999999999999999999998865432 2333344544
No 141
>cd02116 ACT ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. Members of this CD belong to the superfamily of ACT regulatory domains. Pairs of ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. The ACT domain has been detected in a number of diverse proteins; some of these proteins are involved in amino acid and purine biosynthesis, phenylalanine hydroxylation, regulation of bacterial metabolism and transcription, and many remain to be characterized. ACT domain-containing enzymes involved in amino acid and purine synthesis are in many cases allosteric enzymes with complex regulation enforced by the binding of ligands. The ACT domain is commonly involved in the binding of a small regulatory molecule, such as the amino acids L-Ser and L-Phe in the case of D-3-phosphoglycerate dehydrogenase and the bifunctional chorismate mutase-p
Probab=95.41 E-value=0.067 Score=35.97 Aligned_cols=35 Identities=37% Similarity=0.615 Sum_probs=31.7
Q ss_pred EEEEeCCccchHHHHHHHHHhcCCeEEEEEEEeeC
Q 017268 52 IEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHN 86 (374)
Q Consensus 52 I~I~~~DrpGL~a~I~~vL~~~glnI~~A~I~T~~ 86 (374)
|.+.++|++|++++++++|..+|++|.........
T Consensus 1 i~i~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~~ 35 (60)
T cd02116 1 LTVSGPDRPGLLAKVLSVLAEAGINITSIEQRTSG 35 (60)
T ss_pred CEEEecCCCchHHHHHHHHHHCCCcEEEEEeEEcC
Confidence 46889999999999999999999999999987754
No 142
>cd04905 ACT_CM-PDT C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme. The C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme, found in plants, fungi, bacteria, and archaea. The P-protein of E. coli (CM-PDT, PheA) catalyzes the conversion of chorismate to prephenate and then the decarboxylation and dehydration to form phenylpyruvate. These are the first two steps in the biosynthesis of L-Phe and L-Tyr via the shikimate pathway in microorganisms and plants. The E. coli P-protein (CM-PDT) has three domains with an N-terminal domain with chorismate mutase activity, a middle domain with prephenate dehydratase activity, and an ACT regulatory C-terminal domain. The prephenate dehydratase enzyme has a PDT and ACT domain. The ACT domain is essential to bring about the negative allosteric regulation by L-Phe bindi
Probab=95.35 E-value=0.19 Score=38.49 Aligned_cols=48 Identities=13% Similarity=0.146 Sum_probs=37.5
Q ss_pred EEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEec-CCeEEEEEEEEeC
Q 017268 186 VITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTG-RTEAYQEFYIRHV 233 (374)
Q Consensus 186 ~v~V~~~DrpGLl~~i~~~l~~~glnI~~A~i~T~-~g~~~dvF~V~~~ 233 (374)
.+.+..+|+||.|+++..+|+++|+||.+-..... .+...-.|+|...
T Consensus 3 sl~~~~~d~~G~L~~il~~f~~~~ini~~i~s~p~~~~~~~~~f~vd~~ 51 (80)
T cd04905 3 SIVFTLPNKPGALYDVLGVFAERGINLTKIESRPSKGGLWEYVFFIDFE 51 (80)
T ss_pred EEEEEECCCCCHHHHHHHHHHHCCcCEEEEEEEEcCCCCceEEEEEEEE
Confidence 46677899999999999999999999998876654 3344455777543
No 143
>TIGR00656 asp_kin_monofn aspartate kinase, monofunctional class. The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. The protein slr0657 from Synechocystis PCC6803 is extended by a duplication of the C-terminal region corresponding to the beta chain. Incorporation of a second copy of the C-terminal domain may be quite common in this subgroup of aspartokinases.
Probab=95.33 E-value=0.7 Score=46.51 Aligned_cols=99 Identities=12% Similarity=0.135 Sum_probs=65.9
Q ss_pred CEEEEEEE---eCCCcchHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHHhh-c
Q 017268 183 DYTVITMR---SKDRPKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRHVDGLPISSEAERERVIQCLEAAIER-R 258 (374)
Q Consensus 183 ~~t~v~V~---~~DrpGLl~~i~~~l~~~glnI~~A~i~T~~g~~~dvF~V~~~~g~~~~~~~~~~~L~~~L~~~L~~-r 258 (374)
+...|+|. ..+++|+++++..+|.++|++|......... ..-.|.|... ..+++.+.|.+.+.. .
T Consensus 259 ~va~vsv~g~~~~~~~g~~~~if~~L~~~~I~i~~i~~~~s~--~~Is~~V~~~---------d~~~a~~~L~~~~~~~~ 327 (401)
T TIGR00656 259 NVTRVTVHGLGMLGKRGFLARIFGALAERNINVDLISQTPSE--TSISLTVDET---------DADEAVRALKDQSGAAG 327 (401)
T ss_pred CEEEEEEecCCCCCCccHHHHHHHHHHHcCCcEEEEEcCCCC--ceEEEEEeHH---------HHHHHHHHHHHHHHhcC
Confidence 45667787 5788999999999999999999744332111 2223555321 233344445443311 0
Q ss_pred -----c-CCceEEEEEeC---CCccHHHHHHHHHHhCCceEEE
Q 017268 259 -----A-SEGLELELCTE---DRVGLLSDITRIFRENSLSIKR 292 (374)
Q Consensus 259 -----~-~~~tvieV~~~---DRpGLL~~It~~L~~~~i~I~~ 292 (374)
. ..-..|.|.+. ++||+++++.++|++.||||..
T Consensus 328 ~~~i~~~~~~a~IsvVG~~~~~~~g~~a~i~~~L~~~gIni~~ 370 (401)
T TIGR00656 328 LDRVEVEEGLAKVSIVGAGMVGAPGVASEIFSALEEKNINILM 370 (401)
T ss_pred CceEEEeCCeEEEEEECCCcccCccHHHHHHHHHHHCCCcEEE
Confidence 1 22356677775 7999999999999999999985
No 144
>PRK07334 threonine dehydratase; Provisional
Probab=95.28 E-value=0.11 Score=52.51 Aligned_cols=64 Identities=14% Similarity=0.181 Sum_probs=47.5
Q ss_pred ceEEEEEeCCCccHHHHHHHHHHhCCceEEEEEEeec-----CCeeeeEEEEEcCCCCCCChhHHHHHHHHHhh
Q 017268 262 GLELELCTEDRVGLLSDITRIFRENSLSIKRAEISTI-----GGKVKDTFYVTDVTGNPVDPKIIDSIRRQIGH 330 (374)
Q Consensus 262 ~tvieV~~~DRpGLL~~It~~L~~~~i~I~~a~i~T~-----g~~~~D~Fyv~d~~g~~l~~~~~~~l~~~l~~ 330 (374)
.+.|+|.+.||||+|.+|+++|++.++||.++...+. ++.+.-.|.+.-. +.++++.+.+.|..
T Consensus 326 ~v~l~I~~~dr~GlL~dI~~~is~~~~nI~~v~~~~~~~~~~~~~~~i~l~i~V~-----d~~~L~~vi~~Lr~ 394 (403)
T PRK07334 326 LARLRVDIRDRPGALARVTALIGEAGANIIEVSHQRLFTDLPAKGAELELVIETR-----DAAHLQEVIAALRA 394 (403)
T ss_pred EEEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEEecccCCCCCeEEEEEEEEeC-----CHHHHHHHHHHHHH
Confidence 3789999999999999999999999999999998764 2343333433222 23567777777664
No 145
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.09 E-value=0.11 Score=38.54 Aligned_cols=46 Identities=28% Similarity=0.524 Sum_probs=35.9
Q ss_pred EEEEEEeCCccchHHHHHHHHHhcCCeEEEEEEEee-C-CeeEEEEEE
Q 017268 50 TSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTH-N-DRAAAVVHV 95 (374)
Q Consensus 50 ~~I~I~~~DrpGL~a~I~~vL~~~glnI~~A~I~T~-~-~~~~dvf~V 95 (374)
+.+.+..+|+||.+++++.+|+++|+||.+....-. . +....+|.+
T Consensus 2 ~~~~v~~~d~pG~l~~i~~~l~~~~inI~~i~~~~~~~~~~~~v~i~v 49 (72)
T cd04883 2 SQIEVRVPDRPGQLADIAAIFKDRGVNIVSVLVYPSKEEDNKILVFRV 49 (72)
T ss_pred cEEEEEECCCCCHHHHHHHHHHHcCCCEEEEEEeccCCCCeEEEEEEE
Confidence 578999999999999999999999999997765443 2 233345555
No 146
>cd04929 ACT_TPH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxytryptamine (serotonin) and the first reaction in the synthesis of melatonin. Very little is known about the role of the ACT domain in TPH, which appears to be regulated by phosphorylation but not by its substrate or cofactor. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=94.97 E-value=0.15 Score=38.92 Aligned_cols=50 Identities=16% Similarity=0.288 Sum_probs=39.5
Q ss_pred EEEEeCCCccHHHHHHHHHHhCCceEEEEEEeecCCe-eeeEEEEEcCCCCC
Q 017268 265 LELCTEDRVGLLSDITRIFRENSLSIKRAEISTIGGK-VKDTFYVTDVTGNP 315 (374)
Q Consensus 265 ieV~~~DRpGLL~~It~~L~~~~i~I~~a~i~T~g~~-~~D~Fyv~d~~g~~ 315 (374)
+-+..+|+||-|+++...|+.+|+|+.+......... ..=.||| |.+|.+
T Consensus 3 l~~~l~~~~g~L~~iL~~f~~~~inl~~IeSRP~~~~~~~y~F~i-d~e~~~ 53 (74)
T cd04929 3 VIFSLKNEVGGLAKALKLFQELGINVVHIESRKSKRRSSEFEIFV-DCECDQ 53 (74)
T ss_pred EEEEcCCCCcHHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEE-EEEcCH
Confidence 4455689999999999999999999999998776544 4557888 444654
No 147
>cd04898 ACT_ACR-like_4 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=94.74 E-value=0.047 Score=41.51 Aligned_cols=66 Identities=17% Similarity=0.199 Sum_probs=47.0
Q ss_pred EEEEEeCCCccHHHHHHHHHHhCCceEEEEEEeec--CCeeeeE--EEEEcCCCCCCC-hhHHHHHHHHHhh
Q 017268 264 ELELCTEDRVGLLSDITRIFRENSLSIKRAEISTI--GGKVKDT--FYVTDVTGNPVD-PKIIDSIRRQIGH 330 (374)
Q Consensus 264 vieV~~~DRpGLL~~It~~L~~~~i~I~~a~i~T~--g~~~~D~--Fyv~d~~g~~l~-~~~~~~l~~~l~~ 330 (374)
.+|+++.-||-.+||+|-+|..+|+-|.+|.|.-+ +++...+ |.+.+. ++.++ +....++.+.+..
T Consensus 2 PVElsGkGRPrVfyDvTlALK~L~i~IFsaeIgR~~~~~r~wEvyR~LL~e~-~~~~~~~~~r~~i~drv~~ 72 (77)
T cd04898 2 PVELSGKGRPRVFYDITLALKKLGICIFSAEIGRHSTGDRQWEVYRVLLLEH-DRLKLGGRQRSKVVDRVTK 72 (77)
T ss_pred cccccCCCCcceeeehHHHHHHhccEEEehhhhhhhcCCeeEEEEEEeecCC-CccccchHHHHHHHHHHHH
Confidence 47899999999999999999999999999999654 4565555 444443 34454 3344555555443
No 148
>PRK11899 prephenate dehydratase; Provisional
Probab=94.72 E-value=0.14 Score=49.18 Aligned_cols=55 Identities=22% Similarity=0.373 Sum_probs=44.0
Q ss_pred ceEEEEEeCCCccHHHHHHHHHHhCCceEEEEEEeecCCe-eeeEEEEEcCCCCCCC
Q 017268 262 GLELELCTEDRVGLLSDITRIFRENSLSIKRAEISTIGGK-VKDTFYVTDVTGNPVD 317 (374)
Q Consensus 262 ~tvieV~~~DRpGLL~~It~~L~~~~i~I~~a~i~T~g~~-~~D~Fyv~d~~g~~l~ 317 (374)
.|.|-+..+|+||.|+++...|+++|||+.+..-.-.+++ -.=.||| |.+|..-+
T Consensus 194 ktsl~~~~~~~pGaL~~vL~~Fa~~gINLtkIeSRP~~~~~~~Y~F~i-d~eg~~~d 249 (279)
T PRK11899 194 VTTFVFRVRNIPAALYKALGGFATNGVNMTKLESYMVGGSFTATQFYA-DIEGHPED 249 (279)
T ss_pred eEEEEEEeCCCCChHHHHHHHHHHcCCCeeeEEeeecCCCCceEEEEE-EEECCCCC
Confidence 3666677789999999999999999999999998877555 4558888 55676543
No 149
>PRK07334 threonine dehydratase; Provisional
Probab=94.43 E-value=0.26 Score=49.86 Aligned_cols=65 Identities=17% Similarity=0.266 Sum_probs=48.0
Q ss_pred CeEEEEEEeCCccchHHHHHHHHHhcCCeEEEEEEEee----C-CeeEEEEEEecCCCCCCCCCHHHHHHHHHHHHH
Q 017268 48 EHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTH----N-DRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFN 119 (374)
Q Consensus 48 ~~~~I~I~~~DrpGL~a~I~~vL~~~glnI~~A~I~T~----~-~~~~dvf~V~~~~~g~~~~~~~~~~~l~~~L~~ 119 (374)
-...|.|.+.||+|+|++|+.++++.++||.+....+. . +.+...|.|.- .+.+.++.|...|++
T Consensus 325 y~v~l~I~~~dr~GlL~dI~~~is~~~~nI~~v~~~~~~~~~~~~~~~i~l~i~V-------~d~~~L~~vi~~Lr~ 394 (403)
T PRK07334 325 RLARLRVDIRDRPGALARVTALIGEAGANIIEVSHQRLFTDLPAKGAELELVIET-------RDAAHLQEVIAALRA 394 (403)
T ss_pred CEEEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEEecccCCCCCeEEEEEEEEe-------CCHHHHHHHHHHHHH
Confidence 34789999999999999999999999999999998765 3 33334444432 133556666666665
No 150
>cd04871 ACT_PSP_2 ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). The ACT_PSP_2 CD includes the second of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains
Probab=94.38 E-value=0.028 Score=44.04 Aligned_cols=61 Identities=21% Similarity=0.296 Sum_probs=43.1
Q ss_pred EEEEEeCC-CccHHHHHHHHHHhCCceEEEEEEee-----cC----CeeeeEEEEEcCCCCCCChhHHHHHHHHHhh
Q 017268 264 ELELCTED-RVGLLSDITRIFRENSLSIKRAEIST-----IG----GKVKDTFYVTDVTGNPVDPKIIDSIRRQIGH 330 (374)
Q Consensus 264 vieV~~~D-RpGLL~~It~~L~~~~i~I~~a~i~T-----~g----~~~~D~Fyv~d~~g~~l~~~~~~~l~~~l~~ 330 (374)
+|.|.+.| ++|++++|+++|+++|+||...+--+ .+ ....-.|.|+ |.+. ..+.|+++|..
T Consensus 1 ivtvlg~~~~a~~ia~Vs~~lA~~~~NI~~I~~l~~~~~~~~~~~~~~~~~e~~v~---~~~~---~~~~lr~~L~~ 71 (84)
T cd04871 1 IVTLLGRPLTAEQLAAVTRVVADQGLNIDRIRRLSGRVPLEEQDDSPKACVEFSVR---GQPA---DLEALRAALLE 71 (84)
T ss_pred CEEEEcCcCCHHHHHHHHHHHHHcCCCHHHHHHhhccccccccCCCCcEEEEEEEe---CCCC---CHHHHHHHHHH
Confidence 47899999 99999999999999999996654321 11 2455577775 3332 35666666664
No 151
>PF13710 ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B.
Probab=94.28 E-value=0.25 Score=36.47 Aligned_cols=54 Identities=15% Similarity=0.135 Sum_probs=37.6
Q ss_pred CCcchHHHHHHHHHhCCceEEEEEEEe--cCCeEEEEEEEEeCCCCCCCCHHHHHHHHHHHHH
Q 017268 193 DRPKLLFDIVCTLTDMQYVVFHGMVNT--GRTEAYQEFYIRHVDGLPISSEAERERVIQCLEA 253 (374)
Q Consensus 193 DrpGLl~~i~~~l~~~glnI~~A~i~T--~~g~~~dvF~V~~~~g~~~~~~~~~~~L~~~L~~ 253 (374)
|+||.|.+++++|...|+||.+..+.. .++..--++.+... . ...+.|...|.+
T Consensus 1 n~~GvL~Ri~~vf~rRg~nI~sl~v~~~~~~~~~riti~v~~~-~------~~i~~l~~Ql~K 56 (63)
T PF13710_consen 1 NQPGVLNRITGVFRRRGFNIESLSVGPTEDPGISRITIVVSGD-D------REIEQLVKQLEK 56 (63)
T ss_dssp SSTTHHHHHHHHHHTTT-EECEEEEEE-SSTTEEEEEEEEES--C------CHHHHHHHHHHC
T ss_pred CCcHHHHHHHHHHhcCCeEEeeEEeeecCCCCEEEEEEEEeeC-c------hhHHHHHHHHhc
Confidence 789999999999999999999999987 34555444444432 1 245566666654
No 152
>COG0077 PheA Prephenate dehydratase [Amino acid transport and metabolism]
Probab=94.09 E-value=0.21 Score=47.90 Aligned_cols=55 Identities=16% Similarity=0.376 Sum_probs=45.1
Q ss_pred ceEEEEEeCCCccHHHHHHHHHHhCCceEEEEEEeecCCeeee-EEEEEcCCCCCCC
Q 017268 262 GLELELCTEDRVGLLSDITRIFRENSLSIKRAEISTIGGKVKD-TFYVTDVTGNPVD 317 (374)
Q Consensus 262 ~tvieV~~~DRpGLL~~It~~L~~~~i~I~~a~i~T~g~~~~D-~Fyv~d~~g~~l~ 317 (374)
.|.|-+..+|+||.|+++...|+.+|||+.+....-.+..-.+ .||| |.+|..-+
T Consensus 194 kTsl~f~~~n~PGaL~~~L~~Fa~~gINlTkIESRP~k~~~~~Y~F~i-D~eg~~~~ 249 (279)
T COG0077 194 KTSLIFSVPNKPGALYKALGVFAKRGINLTKIESRPLKTGLGEYLFFI-DIEGHIDD 249 (279)
T ss_pred eEEEEEEcCCCCchHHHHHHHHHHcCcceeeEeecccCCCCeeEEEEE-EEecCcCc
Confidence 5778888889999999999999999999999998777665544 6776 66677644
No 153
>TIGR00719 sda_beta L-serine dehydratase, iron-sulfur-dependent, beta subunit. This family of enzymes is not homologous to the pyridoxal phosphate-dependent threonine deaminases and eukaryotic serine deaminases.
Probab=93.97 E-value=0.29 Score=44.98 Aligned_cols=60 Identities=18% Similarity=0.289 Sum_probs=44.8
Q ss_pred CCceEEEEEeCCCccHHHHHHHHHHhCCceEEEEEEeec--CCeeeeEEEEEcCCCCCCChhHHHH
Q 017268 260 SEGLELELCTEDRVGLLSDITRIFRENSLSIKRAEISTI--GGKVKDTFYVTDVTGNPVDPKIIDS 323 (374)
Q Consensus 260 ~~~tvieV~~~DRpGLL~~It~~L~~~~i~I~~a~i~T~--g~~~~D~Fyv~d~~g~~l~~~~~~~ 323 (374)
+..+.+-+.-.||||.+..|+.+|.++||||..+.+.-. |+.+.-+.-+ ..+++++.+++
T Consensus 146 ~~g~~L~~~~~D~PG~Ig~vg~~Lg~~~iNIa~m~v~r~~~g~~Ai~vl~v----D~~v~~~vl~~ 207 (208)
T TIGR00719 146 GEHPAILLEHNDKFGTIAGVANLLAGFEINIEHLETAKKDIGNIALLTIEI----DKNIDDHIKDA 207 (208)
T ss_pred CCccEEEEEeCCCCChHHHHHHHHHhCCccEEEEEEEecCCCCEEEEEEEe----CCCCCHHHHhh
Confidence 345678888899999999999999999999999998764 4555555544 34444454443
No 154
>PRK08210 aspartate kinase I; Reviewed
Probab=93.97 E-value=1.8 Score=43.65 Aligned_cols=96 Identities=17% Similarity=0.229 Sum_probs=64.6
Q ss_pred CEEEEEEEeCCC-cchHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHHhhc---
Q 017268 183 DYTVITMRSKDR-PKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRHVDGLPISSEAERERVIQCLEAAIERR--- 258 (374)
Q Consensus 183 ~~t~v~V~~~Dr-pGLl~~i~~~l~~~glnI~~A~i~T~~g~~~dvF~V~~~~g~~~~~~~~~~~L~~~L~~~L~~r--- 258 (374)
+...|+|...+. ||.++++..+|+++|+||...... ... -.|.+.. +..+++.+.|.+. ...
T Consensus 270 ~i~~isv~~~~~~~g~la~If~~L~~~~I~i~~i~~~--~~~--is~~v~~---------~~~~~a~~~l~~~-~~~v~~ 335 (403)
T PRK08210 270 NVTQIKVKAKENAYDLQQEVFKALAEAGISVDFINIF--PTE--VVFTVSD---------EDSEKAKEILENL-GLKPSV 335 (403)
T ss_pred CcEEEEEecCCCcchHHHHHHHHHHHcCCeEEEEEec--Cce--EEEEEcH---------HHHHHHHHHHHHh-CCcEEE
Confidence 455667766554 999999999999999999877443 222 2355542 1233444444331 111
Q ss_pred cCCceEEEEEeC---CCccHHHHHHHHHHhCCceEEE
Q 017268 259 ASEGLELELCTE---DRVGLLSDITRIFRENSLSIKR 292 (374)
Q Consensus 259 ~~~~tvieV~~~---DRpGLL~~It~~L~~~~i~I~~ 292 (374)
...-.+|.|.+. ++||++.++.++|++.||+|..
T Consensus 336 ~~~~a~isvvG~~~~~~~g~~~~i~~aL~~~~I~i~~ 372 (403)
T PRK08210 336 RENCAKVSIVGAGMAGVPGVMAKIVTALSEEGIEILQ 372 (403)
T ss_pred eCCcEEEEEEcCCcCCCccHHHHHHHHHHhCCCCEEE
Confidence 123466777775 8999999999999999999974
No 155
>PRK06635 aspartate kinase; Reviewed
Probab=93.80 E-value=4 Score=41.13 Aligned_cols=106 Identities=17% Similarity=0.216 Sum_probs=64.9
Q ss_pred EEEEE-eCCccchHHHHHHHHHhcCCeEEEEEEEeeCC-eeEEEEEEecCCCCCCCCCHHHHHHHHHHHHHHHcCCCccc
Q 017268 51 SIEFT-GTDRPGLFSEVCAVLADLHCNVVNAEIWTHND-RAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLRGYDDFR 128 (374)
Q Consensus 51 ~I~I~-~~DrpGL~a~I~~vL~~~glnI~~A~I~T~~~-~~~dvf~V~~~~~g~~~~~~~~~~~l~~~L~~~L~~~~~~~ 128 (374)
.|++. ..++||.++++..+|+.+|+||.--......+ .....|.|.. +..++..+.|.+ +..+..
T Consensus 264 ~Isv~g~~~~~g~l~~i~~~L~~~~I~i~~is~s~~~~~~~~is~~v~~----------~~~~~a~~~L~~-~~~~~~-- 330 (404)
T PRK06635 264 KVTVVGVPDKPGIAAQIFGALAEANINVDMIVQNVSEDGKTDITFTVPR----------DDLEKALELLEE-VKDEIG-- 330 (404)
T ss_pred EEEECCCCCCccHHHHHHHHHHHcCCeEEEEEecCCCCCceeEEEEEcH----------HHHHHHHHHHHH-HHHHcC--
Confidence 34443 45689999999999999999999543222222 2344565632 112233333443 111110
Q ss_pred ccccccCCCCCCcchhhhhhhcccCchhhhhhhhccccCCCCCCCEEEEEcCCCCEEEEEEEe---CCCcchHHHHHHHH
Q 017268 129 KAKTSLSPPGIMNRERRLHQIMFDDRDYERVEKAVGRVEDKSSRPQVTVLNIEKDYTVITMRS---KDRPKLLFDIVCTL 205 (374)
Q Consensus 129 ~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~t~v~V~~---~DrpGLl~~i~~~l 205 (374)
+ ..|.+ ..+...+++.+ ++.||.++++..+|
T Consensus 331 -----~--------------------------------------~~i~~---~~~ia~isvvG~~~~~~~g~~a~i~~~L 364 (404)
T PRK06635 331 -----A--------------------------------------ESVTY---DDDIAKVSVVGVGMRSHPGVAAKMFEAL 364 (404)
T ss_pred -----c--------------------------------------ceEEE---cCCeEEEEEECCCCCCCchHHHHHHHHH
Confidence 0 01111 12456677765 68999999999999
Q ss_pred HhCCceEEEE
Q 017268 206 TDMQYVVFHG 215 (374)
Q Consensus 206 ~~~glnI~~A 215 (374)
++.|+||...
T Consensus 365 a~~~Ini~~i 374 (404)
T PRK06635 365 AEEGINIQMI 374 (404)
T ss_pred HHCCCCEEEE
Confidence 9999999764
No 156
>cd04930 ACT_TH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines (dopamine, noradrenaline and adrenaline), functioning as hormones and neurotransmitters. The enzyme is not regulated by its amino acid substrate, but instead by phosphorylation at several serine residues located N-terminal of the ACT domain, and by feedback inhibition by catecholamines at the active site. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=93.79 E-value=0.16 Score=42.32 Aligned_cols=53 Identities=15% Similarity=0.095 Sum_probs=42.2
Q ss_pred ceEEEEEeCCCccHHHHHHHHHHhCCceEEEEEEeecCCee-eeEEEEEcCCCCC
Q 017268 262 GLELELCTEDRVGLLSDITRIFRENSLSIKRAEISTIGGKV-KDTFYVTDVTGNP 315 (374)
Q Consensus 262 ~tvieV~~~DRpGLL~~It~~L~~~~i~I~~a~i~T~g~~~-~D~Fyv~d~~g~~ 315 (374)
.+.|-+..+|+||-|++|...|+.+|||+.+......+..- .=.||| |.+|.+
T Consensus 41 ktSlifsl~~~pGsL~~iL~~Fa~~gINLt~IESRP~~~~~~eY~FfI-dieg~~ 94 (115)
T cd04930 41 KATLLFSLKEGFSSLSRILKVFETFEAKIHHLESRPSRKEGGDLEVLV-RCEVHR 94 (115)
T ss_pred cEEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEECCcCCCCCceEEEEE-EEEeCH
Confidence 36677777999999999999999999999999988875553 446777 445654
No 157
>PRK06291 aspartate kinase; Provisional
Probab=93.50 E-value=2.4 Score=43.67 Aligned_cols=103 Identities=13% Similarity=0.171 Sum_probs=69.6
Q ss_pred CCEEEEEEEeC---CCcchHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHHhh-
Q 017268 182 KDYTVITMRSK---DRPKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRHVDGLPISSEAERERVIQCLEAAIER- 257 (374)
Q Consensus 182 ~~~t~v~V~~~---DrpGLl~~i~~~l~~~glnI~~A~i~T~~g~~~dvF~V~~~~g~~~~~~~~~~~L~~~L~~~L~~- 257 (374)
.+...|++.+. +.+|+++++..+|+++|++|......+.. .--.|.|... ..++..+.|.+.+..
T Consensus 319 ~~valIsI~g~~m~~~~g~~arvf~~L~~~gI~V~mIsq~sse--~sIsf~V~~~---------d~~~av~~L~~~~~~~ 387 (465)
T PRK06291 319 KNVALINISGAGMVGVPGTAARIFSALAEEGVNVIMISQGSSE--SNISLVVDEA---------DLEKALKALRREFGEG 387 (465)
T ss_pred CCEEEEEEeCCCCCCCccHHHHHHHHHHHCCCcEEEEEecCCC--ceEEEEEeHH---------HHHHHHHHHHHHHHHh
Confidence 34667888764 78999999999999999999865443322 2223555432 223333444443322
Q ss_pred ---c---cCCceEEEEEeC---CCccHHHHHHHHHHhCCceEEEEEE
Q 017268 258 ---R---ASEGLELELCTE---DRVGLLSDITRIFRENSLSIKRAEI 295 (374)
Q Consensus 258 ---r---~~~~tvieV~~~---DRpGLL~~It~~L~~~~i~I~~a~i 295 (374)
. ...-.+|.|.+. +++|++.++..+|++.||+|....-
T Consensus 388 ~~~~i~~~~~~a~IsvvG~gm~~~~gv~~rif~aL~~~~I~v~~isq 434 (465)
T PRK06291 388 LVRDVTFDKDVCVVAVVGAGMAGTPGVAGRIFSALGESGINIKMISQ 434 (465)
T ss_pred cCcceEEeCCEEEEEEEcCCccCCcChHHHHHHHHHHCCCCEEEEEe
Confidence 1 123467888886 7999999999999999999986553
No 158
>PRK10872 relA (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional
Probab=93.34 E-value=0.45 Score=51.69 Aligned_cols=64 Identities=16% Similarity=0.263 Sum_probs=48.5
Q ss_pred ceEEEEEeCCCccHHHHHHHHHHhCCceEEEEEEeecC--CeeeeEEEEEcCCCCCCChhHHHHHHHHHhh
Q 017268 262 GLELELCTEDRVGLLSDITRIFRENSLSIKRAEISTIG--GKVKDTFYVTDVTGNPVDPKIIDSIRRQIGH 330 (374)
Q Consensus 262 ~tvieV~~~DRpGLL~~It~~L~~~~i~I~~a~i~T~g--~~~~D~Fyv~d~~g~~l~~~~~~~l~~~l~~ 330 (374)
...|.|.+.||+|+|.+|+.++++.++||..+.+.+.. +.+.-.|-|.-. +-+++..|.+.|..
T Consensus 666 ~v~I~I~~~Dr~GlL~dIt~~is~~~~nI~~v~~~~~~~~~~~~~~~~ieV~-----~~~~L~~l~~~L~~ 731 (743)
T PRK10872 666 SLVVRVTANDRSGLLRDITTILANEKVNVLGVASRSDTKQQLATIDMTIEIY-----NLQVLGRVLGKLNQ 731 (743)
T ss_pred EEEEEEEEcCCCCHHHHHHHHHHHCCCCeEEEEeEEcCCCCEEEEEEEEEEC-----CHHHHHHHHHHHhc
Confidence 35899999999999999999999999999999988753 444445544322 12567777777764
No 159
>cd04885 ACT_ThrD-I Tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes each of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=93.15 E-value=0.59 Score=34.62 Aligned_cols=31 Identities=13% Similarity=0.040 Sum_probs=27.0
Q ss_pred EEEeCCCcchHHHHHHHHHhCCceEEEEEEEe
Q 017268 188 TMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNT 219 (374)
Q Consensus 188 ~V~~~DrpGLl~~i~~~l~~~glnI~~A~i~T 219 (374)
.|.-+||||-|.+++.+++. |.||...+-..
T Consensus 2 ~v~ipdkPG~l~~~~~~i~~-~~nI~~~~~~~ 32 (68)
T cd04885 2 AVTFPERPGALKKFLELLGP-PRNITEFHYRN 32 (68)
T ss_pred EEECCCCCCHHHHHHHHhCC-CCcEEEEEEEc
Confidence 57789999999999999999 99999875544
No 160
>cd04885 ACT_ThrD-I Tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes each of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=93.11 E-value=0.59 Score=34.62 Aligned_cols=61 Identities=21% Similarity=0.247 Sum_probs=40.2
Q ss_pred EEEEeCCccchHHHHHHHHHhcCCeEEEEEEEeeCCeeEEEEEEecCCCCCCCCCHHHHHHHHHHHHH
Q 017268 52 IEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFN 119 (374)
Q Consensus 52 I~I~~~DrpGL~a~I~~vL~~~glnI~~A~I~T~~~~~~dvf~V~~~~~g~~~~~~~~~~~l~~~L~~ 119 (374)
+.|.-+|+||=|.+++.+++. |.||..-+-...+-....+++...- .+++..+.|.+.|.+
T Consensus 1 ~~v~ipdkPG~l~~~~~~i~~-~~nI~~~~~~~~~~~~~~v~v~ie~------~~~~~~~~i~~~L~~ 61 (68)
T cd04885 1 FAVTFPERPGALKKFLELLGP-PRNITEFHYRNQGGDEARVLVGIQV------PDREDLAELKERLEA 61 (68)
T ss_pred CEEECCCCCCHHHHHHHHhCC-CCcEEEEEEEcCCCCceEEEEEEEe------CCHHHHHHHHHHHHH
Confidence 357789999999999999999 9999976554433222333333221 123455677777765
No 161
>PRK10872 relA (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional
Probab=92.76 E-value=0.64 Score=50.54 Aligned_cols=63 Identities=22% Similarity=0.206 Sum_probs=48.1
Q ss_pred EEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEec--CCeEEEEEEEEeCCCCCCCCHHHHHHHHHHHH
Q 017268 184 YTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTG--RTEAYQEFYIRHVDGLPISSEAERERVIQCLE 252 (374)
Q Consensus 184 ~t~v~V~~~DrpGLl~~i~~~l~~~glnI~~A~i~T~--~g~~~dvF~V~~~~g~~~~~~~~~~~L~~~L~ 252 (374)
.+.|.|.+.||+|+|++|+.+++..++||....+.+. ++.+.-.|.|.-.+ -..+.++.+.|.
T Consensus 666 ~v~I~I~~~Dr~GlL~dIt~~is~~~~nI~~v~~~~~~~~~~~~~~~~ieV~~------~~~L~~l~~~L~ 730 (743)
T PRK10872 666 SLVVRVTANDRSGLLRDITTILANEKVNVLGVASRSDTKQQLATIDMTIEIYN------LQVLGRVLGKLN 730 (743)
T ss_pred EEEEEEEEcCCCCHHHHHHHHHHHCCCCeEEEEeEEcCCCCEEEEEEEEEECC------HHHHHHHHHHHh
Confidence 3578899999999999999999999999999999875 46665556655432 245666666654
No 162
>cd04880 ACT_AAAH-PDT-like ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. Eukaryotic AAAHs have an N-terminal ACT (regulatory) domain, a middle catalytic domain and a C-terminal domain which is responsible for the oligomeric state of the enzyme forming a domain-swapped tetrameric coiled-coil. The PAH, TH, and TPH enzymes contain highly conserved catalytic domains but distinct N-terminal ACT domains and differ in their mech
Probab=92.51 E-value=1.3 Score=33.23 Aligned_cols=46 Identities=13% Similarity=0.149 Sum_probs=33.9
Q ss_pred EEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecC-CeEEEEEEEEe
Q 017268 187 ITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGR-TEAYQEFYIRH 232 (374)
Q Consensus 187 v~V~~~DrpGLl~~i~~~l~~~glnI~~A~i~T~~-g~~~dvF~V~~ 232 (374)
+.+..+|+||-|+++..+|+++|+||..-...-.. ....-.|+|.-
T Consensus 2 l~~~l~d~pG~L~~vL~~f~~~~vni~~I~Srp~~~~~~~~~f~id~ 48 (75)
T cd04880 2 LVFSLKNKPGALAKALKVFAERGINLTKIESRPSRKGLWEYEFFVDF 48 (75)
T ss_pred EEEEeCCcCCHHHHHHHHHHHCCCCEEEEEeeecCCCCceEEEEEEE
Confidence 34556899999999999999999999988655433 23334455654
No 163
>cd04871 ACT_PSP_2 ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). The ACT_PSP_2 CD includes the second of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains
Probab=92.42 E-value=0.097 Score=40.93 Aligned_cols=66 Identities=18% Similarity=0.230 Sum_probs=45.8
Q ss_pred EEEEEeCC-ccchHHHHHHHHHhcCCeEEEEEEEee-----C----CeeEEEEEEecCCCCCCCCCHHHHHHHHHHHHHH
Q 017268 51 SIEFTGTD-RPGLFSEVCAVLADLHCNVVNAEIWTH-----N----DRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNV 120 (374)
Q Consensus 51 ~I~I~~~D-rpGL~a~I~~vL~~~glnI~~A~I~T~-----~----~~~~dvf~V~~~~~g~~~~~~~~~~~l~~~L~~~ 120 (374)
.|+|.++| ..|++++++++|+++|+||.+-+-.+. + ..+...|.|..+ +. + .+.++..|.+
T Consensus 1 ivtvlg~~~~a~~ia~Vs~~lA~~~~NI~~I~~l~~~~~~~~~~~~~~~~~e~~v~~~----~~-~---~~~lr~~L~~- 71 (84)
T cd04871 1 IVTLLGRPLTAEQLAAVTRVVADQGLNIDRIRRLSGRVPLEEQDDSPKACVEFSVRGQ----PA-D---LEALRAALLE- 71 (84)
T ss_pred CEEEEcCcCCHHHHHHHHHHHHHcCCCHHHHHHhhccccccccCCCCcEEEEEEEeCC----CC-C---HHHHHHHHHH-
Confidence 37999999 999999999999999999986554321 1 234456777642 21 3 2567887776
Q ss_pred HcCCC
Q 017268 121 LRGYD 125 (374)
Q Consensus 121 L~~~~ 125 (374)
+..+.
T Consensus 72 la~el 76 (84)
T cd04871 72 LASEL 76 (84)
T ss_pred Hhccc
Confidence 44433
No 164
>TIGR00656 asp_kin_monofn aspartate kinase, monofunctional class. The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. The protein slr0657 from Synechocystis PCC6803 is extended by a duplication of the C-terminal region corresponding to the beta chain. Incorporation of a second copy of the C-terminal domain may be quite common in this subgroup of aspartokinases.
Probab=92.19 E-value=14 Score=37.12 Aligned_cols=107 Identities=14% Similarity=0.185 Sum_probs=66.4
Q ss_pred CCeEEEEEE---eCCccchHHHHHHHHHhcCCeEEEEEEEeeCCeeEEEEEEecCCCCCCCCCHHHHHHHHHHHHHHHcC
Q 017268 47 EEHTSIEFT---GTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLRG 123 (374)
Q Consensus 47 ~~~~~I~I~---~~DrpGL~a~I~~vL~~~glnI~~A~I~T~~~~~~dvf~V~~~~~g~~~~~~~~~~~l~~~L~~~L~~ 123 (374)
.+...|+|. ..+++|.++++..+|..+|+||..-... .. .....|.|.. +..+++.+.|.+.+..
T Consensus 258 ~~va~vsv~g~~~~~~~g~~~~if~~L~~~~I~i~~i~~~-~s-~~~Is~~V~~----------~d~~~a~~~L~~~~~~ 325 (401)
T TIGR00656 258 KNVTRVTVHGLGMLGKRGFLARIFGALAERNINVDLISQT-PS-ETSISLTVDE----------TDADEAVRALKDQSGA 325 (401)
T ss_pred CCEEEEEEecCCCCCCccHHHHHHHHHHHcCCcEEEEEcC-CC-CceEEEEEeH----------HHHHHHHHHHHHHHHh
Confidence 345567777 4678999999999999999999733211 11 2233455532 1123333444442211
Q ss_pred CCcccccccccCCCCCCcchhhhhhhcccCchhhhhhhhccccCCCCCCCEEEEEcCCCCEEEEEEEe---CCCcchHHH
Q 017268 124 YDDFRKAKTSLSPPGIMNRERRLHQIMFDDRDYERVEKAVGRVEDKSSRPQVTVLNIEKDYTVITMRS---KDRPKLLFD 200 (374)
Q Consensus 124 ~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~t~v~V~~---~DrpGLl~~ 200 (374)
.. + ..+.+ ..+...|.+.+ +++||++++
T Consensus 326 -~~-------~--------------------------------------~~i~~---~~~~a~IsvVG~~~~~~~g~~a~ 356 (401)
T TIGR00656 326 -AG-------L--------------------------------------DRVEV---EEGLAKVSIVGAGMVGAPGVASE 356 (401)
T ss_pred -cC-------C--------------------------------------ceEEE---eCCeEEEEEECCCcccCccHHHH
Confidence 00 0 01112 23456677777 479999999
Q ss_pred HHHHHHhCCceEEE
Q 017268 201 IVCTLTDMQYVVFH 214 (374)
Q Consensus 201 i~~~l~~~glnI~~ 214 (374)
+..+|++.|+||..
T Consensus 357 i~~~L~~~gIni~~ 370 (401)
T TIGR00656 357 IFSALEEKNINILM 370 (401)
T ss_pred HHHHHHHCCCcEEE
Confidence 99999999999984
No 165
>PRK11092 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional
Probab=92.14 E-value=0.8 Score=49.61 Aligned_cols=64 Identities=17% Similarity=0.173 Sum_probs=48.0
Q ss_pred ceEEEEEeCCCccHHHHHHHHHHhCCceEEEEEEeecCC-eeeeEEEEEcCCCCCCChhHHHHHHHHHhh
Q 017268 262 GLELELCTEDRVGLLSDITRIFRENSLSIKRAEISTIGG-KVKDTFYVTDVTGNPVDPKIIDSIRRQIGH 330 (374)
Q Consensus 262 ~tvieV~~~DRpGLL~~It~~L~~~~i~I~~a~i~T~g~-~~~D~Fyv~d~~g~~l~~~~~~~l~~~l~~ 330 (374)
...|.|.+.||+|+|.+|+.++++.++||.++.+.+..+ .+.-.|-+.-. +-+++..|-+.|..
T Consensus 626 ~v~i~I~~~dr~GlL~dI~~~i~~~~~nI~~v~~~~~~~~~~~~~~~ieV~-----~~~~L~~i~~~Lr~ 690 (702)
T PRK11092 626 IAEIKVEMFNHQGALANLTAAINTTGSNIQSLNTEEKDGRVYSAFIRLTAR-----DRVHLANIMRKIRV 690 (702)
T ss_pred EEEEEEEEeCCCCHHHHHHHHHHHCCCCeEEEEEEEcCCCEEEEEEEEEEC-----CHHHHHHHHHHHhC
Confidence 468999999999999999999999999999999887653 34444444222 12567777777664
No 166
>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=92.13 E-value=1.1 Score=34.74 Aligned_cols=62 Identities=8% Similarity=0.077 Sum_probs=36.5
Q ss_pred EEEEEeCCCccHHHHHHHHHHhCCceEEEEEEeecCCeeeeEEEEEcCCCCCCChhHHHHHHHHHhh
Q 017268 264 ELELCTEDRVGLLSDITRIFRENSLSIKRAEISTIGGKVKDTFYVTDVTGNPVDPKIIDSIRRQIGH 330 (374)
Q Consensus 264 vieV~~~DRpGLL~~It~~L~~~~i~I~~a~i~T~g~~~~D~Fyv~d~~g~~l~~~~~~~l~~~l~~ 330 (374)
++.|.-+||||-|.+++++|+..+|+ +..+-....+.+.-.+-+...+| +++.+.+.+.|..
T Consensus 3 vl~v~ipD~PG~L~~ll~~l~~anI~-~~~y~~~~~~~~~v~i~ie~~~~----~~~~~~i~~~L~~ 64 (85)
T cd04906 3 LLAVTIPERPGSFKKFCELIGPRNIT-EFNYRYADEKDAHIFVGVSVANG----AEELAELLEDLKS 64 (85)
T ss_pred EEEEecCCCCcHHHHHHHHhCCCcee-EEEEEccCCCeeEEEEEEEeCCc----HHHHHHHHHHHHH
Confidence 57889999999999999999955555 22222222233333333333311 3556666666654
No 167
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=91.92 E-value=0.35 Score=49.08 Aligned_cols=61 Identities=25% Similarity=0.331 Sum_probs=48.3
Q ss_pred ceEEEEEeCCCccHHHHHHHHHHhCCceEEEEEEeecCCeeeeEEEEEcCCCCCCChhHHHHHHH
Q 017268 262 GLELELCTEDRVGLLSDITRIFRENSLSIKRAEISTIGGKVKDTFYVTDVTGNPVDPKIIDSIRR 326 (374)
Q Consensus 262 ~tvieV~~~DRpGLL~~It~~L~~~~i~I~~a~i~T~g~~~~D~Fyv~d~~g~~l~~~~~~~l~~ 326 (374)
.+.|-+.-.|+||.+..|+.+|+++|+||.+.++...|+.+.-+|-+ ++ ++.++.+++|++
T Consensus 338 ~~rlii~h~d~pG~ia~it~~l~~~~iNI~~m~~~~~~~~A~~iie~---D~-~~~~~~~~~i~~ 398 (409)
T PRK11790 338 GHRLLHIHENRPGVLAAINQIFAEQGINIAAQYLQTDGEIGYVVIDV---DA-DYAEEALDALKA 398 (409)
T ss_pred CceEEEEeCCCCCHHHHHHHHHHhcCCCHHHheeccCCCEEEEEEEe---CC-CCcHHHHHHHHc
Confidence 47788899999999999999999999999999999888777666644 33 444455566553
No 168
>PRK10622 pheA bifunctional chorismate mutase/prephenate dehydratase; Provisional
Probab=91.80 E-value=0.73 Score=46.39 Aligned_cols=55 Identities=25% Similarity=0.424 Sum_probs=43.7
Q ss_pred ceEEEEEeCCCccHHHHHHHHHHhCCceEEEEEEeecCCe-eeeEEEEEcCCCCCCC
Q 017268 262 GLELELCTEDRVGLLSDITRIFRENSLSIKRAEISTIGGK-VKDTFYVTDVTGNPVD 317 (374)
Q Consensus 262 ~tvieV~~~DRpGLL~~It~~L~~~~i~I~~a~i~T~g~~-~~D~Fyv~d~~g~~l~ 317 (374)
.+.|-+..+|+||.|+++...|+.+|||+.+..-.-.+.+ -.=.||| |..|..-+
T Consensus 297 ktsl~~~~~~~pGaL~~~L~~Fa~~giNLtkIeSRP~~~~~~~Y~Ffi-d~eg~~~d 352 (386)
T PRK10622 297 KTTLLMATGQQAGALVEALLVLRNHNLIMTKLESRPIHGNPWEEMFYL-DVQANLRS 352 (386)
T ss_pred cEEEEEEcCCCCcHHHHHHHHHHHcCCCeeEEEeeecCCCCceEEEEE-EEeCCCCC
Confidence 4566677789999999999999999999999998855544 5668888 55676543
No 169
>PRK11092 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional
Probab=91.79 E-value=0.79 Score=49.69 Aligned_cols=64 Identities=16% Similarity=0.226 Sum_probs=47.0
Q ss_pred eEEEEEEeCCccchHHHHHHHHHhcCCeEEEEEEEeeCCee-EEEEEEecCCCCCCCCCHHHHHHHHHHHHH
Q 017268 49 HTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRA-AAVVHVTDHSTGYAIKDPKRLSTIKELLFN 119 (374)
Q Consensus 49 ~~~I~I~~~DrpGL~a~I~~vL~~~glnI~~A~I~T~~~~~-~dvf~V~~~~~g~~~~~~~~~~~l~~~L~~ 119 (374)
...|.|.+.||+|+|++|+.+++..++||.+....+.+++. ...|.|.- .+.+.+..|-..|.+
T Consensus 626 ~v~i~I~~~dr~GlL~dI~~~i~~~~~nI~~v~~~~~~~~~~~~~~~ieV-------~~~~~L~~i~~~Lr~ 690 (702)
T PRK11092 626 IAEIKVEMFNHQGALANLTAAINTTGSNIQSLNTEEKDGRVYSAFIRLTA-------RDRVHLANIMRKIRV 690 (702)
T ss_pred EEEEEEEEeCCCCHHHHHHHHHHHCCCCeEEEEEEEcCCCEEEEEEEEEE-------CCHHHHHHHHHHHhC
Confidence 45789999999999999999999999999999987765444 34455532 123455666555554
No 170
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=91.76 E-value=0.78 Score=46.56 Aligned_cols=50 Identities=16% Similarity=0.293 Sum_probs=43.1
Q ss_pred CCCeEEEEEEeCCccchHHHHHHHHHhcCCeEEEEEEEeeCCeeEEEEEE
Q 017268 46 TEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHV 95 (374)
Q Consensus 46 ~~~~~~I~I~~~DrpGL~a~I~~vL~~~glnI~~A~I~T~~~~~~dvf~V 95 (374)
......|.+.-+|+||.+++|+.+|+++|+||..-+..+.++.+..++-+
T Consensus 335 ~~~~~rlii~h~d~pG~ia~it~~l~~~~iNI~~m~~~~~~~~A~~iie~ 384 (409)
T PRK11790 335 HPGGHRLLHIHENRPGVLAAINQIFAEQGINIAAQYLQTDGEIGYVVIDV 384 (409)
T ss_pred CCCCceEEEEeCCCCCHHHHHHHHHHhcCCCHHHheeccCCCEEEEEEEe
Confidence 44778899999999999999999999999999998888888666666655
No 171
>PRK09034 aspartate kinase; Reviewed
Probab=91.66 E-value=3.4 Score=42.49 Aligned_cols=118 Identities=14% Similarity=0.169 Sum_probs=73.5
Q ss_pred CEEEEEEEe---CCCcchHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHHhh-c
Q 017268 183 DYTVITMRS---KDRPKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRHVDGLPISSEAERERVIQCLEAAIER-R 258 (374)
Q Consensus 183 ~~t~v~V~~---~DrpGLl~~i~~~l~~~glnI~~A~i~T~~g~~~dvF~V~~~~g~~~~~~~~~~~L~~~L~~~L~~-r 258 (374)
+.+.|++.. .+++|+++++..+|+++|+||... + .+..--.|.|...+- . ...+..+.+.|...+.. .
T Consensus 307 ~i~~Itv~~~~~~~~~g~~a~if~~la~~~I~Vd~i---~-ss~~sis~~v~~~~~---~-~a~~~~l~~el~~~~~~~~ 378 (454)
T PRK09034 307 GFTSIYISKYLMNREVGFGRKVLQILEDHGISYEHM---P-SGIDDLSIIIRERQL---T-PKKEDEILAEIKQELNPDE 378 (454)
T ss_pred CEEEEEEccCCCCCCccHHHHHHHHHHHcCCeEEEE---c-CCCcEEEEEEeHHHh---h-HHHHHHHHHHHHHhhCCce
Confidence 456677764 678999999999999999999875 2 222223466665321 0 00113333334332211 0
Q ss_pred ---cCCceEEEEEeC---CCccHHHHHHHHHHhCCceEEEEEEeecCCeeeeEEEEEc
Q 017268 259 ---ASEGLELELCTE---DRVGLLSDITRIFRENSLSIKRAEISTIGGKVKDTFYVTD 310 (374)
Q Consensus 259 ---~~~~tvieV~~~---DRpGLL~~It~~L~~~~i~I~~a~i~T~g~~~~D~Fyv~d 310 (374)
...-..|.|.+. ++||++.++..+|++.||+|....-.+. ...-.|.|..
T Consensus 379 I~~~~~va~VsivG~g~~~~~gv~arif~aL~~~~InV~mIsq~~S--e~~Is~vV~~ 434 (454)
T PRK09034 379 LEIEHDLAIIMVVGEGMRQTVGVAAKITKALAEANINIQMINQGSS--EISIMFGVKN 434 (454)
T ss_pred EEEeCCEEEEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEecCC--cceEEEEEcH
Confidence 122467888553 8999999999999999999988764442 1333465543
No 172
>cd04931 ACT_PAH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe. In PAH, an autoregulatory sequence, N-terminal of the ACT domain, extends across the catalytic domain active site and regulates the enzyme by intrasteric regulation. It appears that the activation by L-Phe induces a conformational change that converts the enzyme to a high-affinity and high-activity state. Modulation of activity is achieved through inhibition by BH4 and activation by phosphorylation of serine residues of the autoregulatory region. The molecular basis for the cooperative activation process is not fully understood yet. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=91.62 E-value=1.9 Score=34.17 Aligned_cols=69 Identities=14% Similarity=0.149 Sum_probs=45.7
Q ss_pred CEEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEec-CCeEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHH
Q 017268 183 DYTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTG-RTEAYQEFYIRHVDGLPISSEAERERVIQCLEAAI 255 (374)
Q Consensus 183 ~~t~v~V~~~DrpGLl~~i~~~l~~~glnI~~A~i~T~-~g~~~dvF~V~~~~g~~~~~~~~~~~L~~~L~~~L 255 (374)
..+.+.+..+|+||-|+++...|+.+|+|+..-...-. +....-.|+|.-. |. .++ ..+.+-+.|.+.|
T Consensus 13 ~ktslif~l~~~pGsL~~vL~~Fa~~~INLt~IeSRP~~~~~~~Y~FfVDie-g~--~~~-~~~~~l~~L~~~~ 82 (90)
T cd04931 13 GVISLIFSLKEEVGALAKVLRLFEEKDINLTHIESRPSRLNKDEYEFFINLD-KK--SAP-ALDPIIKSLRNDI 82 (90)
T ss_pred CcEEEEEEcCCCCcHHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEEEEE-cC--CCH-HHHHHHHHHHHHh
Confidence 44667777799999999999999999999987777653 3333445777653 33 122 4444444444443
No 173
>COG1707 ACT domain-containing protein [General function prediction only]
Probab=91.55 E-value=0.63 Score=40.99 Aligned_cols=47 Identities=11% Similarity=0.096 Sum_probs=38.3
Q ss_pred EEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecC-C-eEEEEEEEEe
Q 017268 186 VITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGR-T-EAYQEFYIRH 232 (374)
Q Consensus 186 ~v~V~~~DrpGLl~~i~~~l~~~glnI~~A~i~T~~-g-~~~dvF~V~~ 232 (374)
-+.+.+.++||.|.+++++++++|.||..++.+..+ | .+.--|.+.+
T Consensus 4 ~lsi~~enk~GvL~~ltgiiae~ggNIt~~q~~~~~~g~~~~iYmEiEg 52 (218)
T COG1707 4 GLSIIAENKPGVLRDLTGIIAEEGGNITYAQQFLEKDGEKALIYMEIEG 52 (218)
T ss_pred eeEEEeecCccHHHHHHHHHHhcCCceEeeehhhhccCceEEEEEEeeC
Confidence 367889999999999999999999999999998853 3 5554455544
No 174
>PF13840 ACT_7: ACT domain ; PDB: 3S1T_A 1ZHV_A 3AB4_K 3AB2_O 2DTJ_A 3AAW_A 2RE1_B 3MAH_A 1ZVP_D.
Probab=91.47 E-value=0.94 Score=33.42 Aligned_cols=47 Identities=21% Similarity=0.403 Sum_probs=36.2
Q ss_pred CCCeEEEEEEeC----CccchHHHHHHHHHhcCCeEEEEEEEeeCCeeEEEEEEec
Q 017268 46 TEEHTSIEFTGT----DRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTD 97 (374)
Q Consensus 46 ~~~~~~I~I~~~----DrpGL~a~I~~vL~~~glnI~~A~I~T~~~~~~dvf~V~~ 97 (374)
..+...|+|.++ |.||+.++++..|++.|+||.-.. | ...+.+.|..
T Consensus 3 ~~~~~~i~v~g~g~~~~~~Gv~a~i~~~La~~~I~i~~is--S---~~~~~ilV~~ 53 (65)
T PF13840_consen 3 EEDWAKISVVGPGLRFDVPGVAAKIFSALAEAGINIFMIS--S---EISISILVKE 53 (65)
T ss_dssp ESEEEEEEEEEECGTTTSHHHHHHHHHHHHHTTS-ECEEE--E---SSEEEEEEEG
T ss_pred cCCEEEEEEEccccCCCcccHHHHHHHHHHHCCCCEEEEE--E---eeeEEEEEeH
Confidence 346678899988 799999999999999999998655 3 3456666754
No 175
>TIGR00691 spoT_relA (p)ppGpp synthetase, RelA/SpoT family. (p)ppGpp is a regulatory metabolite of the stringent response, but appears also to be involved in antibiotic biosynthesis in some species.
Probab=91.39 E-value=1.1 Score=48.55 Aligned_cols=64 Identities=25% Similarity=0.237 Sum_probs=47.1
Q ss_pred ceEEEEEeCCCccHHHHHHHHHHhCCceEEEEEEeecC-CeeeeEEEEEcCCCCCCChhHHHHHHHHHhh
Q 017268 262 GLELELCTEDRVGLLSDITRIFRENSLSIKRAEISTIG-GKVKDTFYVTDVTGNPVDPKIIDSIRRQIGH 330 (374)
Q Consensus 262 ~tvieV~~~DRpGLL~~It~~L~~~~i~I~~a~i~T~g-~~~~D~Fyv~d~~g~~l~~~~~~~l~~~l~~ 330 (374)
.+.|.|.+.||+|+|.+|+.++++.++||.++.+.+.. +.+.-.|-|.-. +-.++..|-.+|..
T Consensus 610 ~v~I~I~~~dr~GlLadI~~~ia~~~~nI~~v~~~~~~~~~~~~~~~ieV~-----~~~~L~~ii~~L~~ 674 (683)
T TIGR00691 610 IVDINIEAVDRKGVLSDLTTAISENDSNIVSISTKTYGKREAILNITVEIK-----NYKHLLKIMLKIKT 674 (683)
T ss_pred EEEEEEEEecCCCHHHHHHHHHHHCCCCeEEEEeEEcCCCEEEEEEEEEEC-----CHHHHHHHHHHHhC
Confidence 46899999999999999999999999999999998764 333333333221 12566777666654
No 176
>KOG2663 consensus Acetolactate synthase, small subunit [Amino acid transport and metabolism]
Probab=91.28 E-value=0.52 Score=44.18 Aligned_cols=37 Identities=14% Similarity=0.268 Sum_probs=33.5
Q ss_pred CceEEEEEeCCCccHHHHHHHHHHhCCceEEEEEEee
Q 017268 261 EGLELELCTEDRVGLLSDITRIFRENSLSIKRAEIST 297 (374)
Q Consensus 261 ~~tvieV~~~DRpGLL~~It~~L~~~~i~I~~a~i~T 297 (374)
+..+|.+...|-||+|.+|+.+|+.+|.||.++-+--
T Consensus 76 krHvinclVqnEpGvlsRisGvlAaRGfNIdSLvVc~ 112 (309)
T KOG2663|consen 76 KRHVINCLVQNEPGVLSRISGVLAARGFNIDSLVVCL 112 (309)
T ss_pred cceeEEEEecCCchHHHHHHHHHHhccCCchheeeec
Confidence 3578999999999999999999999999999988643
No 177
>TIGR00719 sda_beta L-serine dehydratase, iron-sulfur-dependent, beta subunit. This family of enzymes is not homologous to the pyridoxal phosphate-dependent threonine deaminases and eukaryotic serine deaminases.
Probab=91.03 E-value=0.82 Score=41.96 Aligned_cols=49 Identities=12% Similarity=0.064 Sum_probs=41.1
Q ss_pred EEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEec--CCeEEEEEEEEe
Q 017268 184 YTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTG--RTEAYQEFYIRH 232 (374)
Q Consensus 184 ~t~v~V~~~DrpGLl~~i~~~l~~~glnI~~A~i~T~--~g~~~dvF~V~~ 232 (374)
...+.+.-.|+||.+..++.+|.++|+||...++... +|.++-+..|..
T Consensus 148 g~~L~~~~~D~PG~Ig~vg~~Lg~~~iNIa~m~v~r~~~g~~Ai~vl~vD~ 198 (208)
T TIGR00719 148 HPAILLEHNDKFGTIAGVANLLAGFEINIEHLETAKKDIGNIALLTIEIDK 198 (208)
T ss_pred ccEEEEEeCCCCChHHHHHHHHHhCCccEEEEEEEecCCCCEEEEEEEeCC
Confidence 4456777899999999999999999999999999864 678887766654
No 178
>COG1707 ACT domain-containing protein [General function prediction only]
Probab=90.86 E-value=1 Score=39.73 Aligned_cols=44 Identities=25% Similarity=0.262 Sum_probs=35.8
Q ss_pred EEEEeCCCccHHHHHHHHHHhCCceEEEEEEeecCC--eeeeEEEE
Q 017268 265 LELCTEDRVGLLSDITRIFRENSLSIKRAEISTIGG--KVKDTFYV 308 (374)
Q Consensus 265 ieV~~~DRpGLL~~It~~L~~~~i~I~~a~i~T~g~--~~~D~Fyv 308 (374)
+.+.+.++||.|.++|..++++|.||.+++-...++ .+.--|.+
T Consensus 5 lsi~~enk~GvL~~ltgiiae~ggNIt~~q~~~~~~g~~~~iYmEi 50 (218)
T COG1707 5 LSIIAENKPGVLRDLTGIIAEEGGNITYAQQFLEKDGEKALIYMEI 50 (218)
T ss_pred eEEEeecCccHHHHHHHHHHhcCCceEeeehhhhccCceEEEEEEe
Confidence 678899999999999999999999999999776654 44433333
No 179
>PRK08818 prephenate dehydrogenase; Provisional
Probab=90.85 E-value=0.53 Score=47.13 Aligned_cols=49 Identities=16% Similarity=0.215 Sum_probs=38.3
Q ss_pred ceEEEEEeC-CCccHHHHHHHHHHhCCceEEEEEEeecCCeeeeEEEEEcC
Q 017268 262 GLELELCTE-DRVGLLSDITRIFRENSLSIKRAEISTIGGKVKDTFYVTDV 311 (374)
Q Consensus 262 ~tvieV~~~-DRpGLL~~It~~L~~~~i~I~~a~i~T~g~~~~D~Fyv~d~ 311 (374)
.+.|.+.-+ |+||.|++|+.+|+++||||.+..+ .....-.-.|||.-.
T Consensus 295 ~~~l~~~v~~d~pG~L~~vl~~la~~~INit~Ies-~~~r~~~y~f~i~~~ 344 (370)
T PRK08818 295 PLTLSVYLPEDRPGSLRTLLHVFEQHGVNLSSIHS-SRTPAGELHFRIGFE 344 (370)
T ss_pred ceEEEEECCCCCCChHHHHHHHHHHcCcccceEEE-ecccCceEEEEEEEe
Confidence 467777776 9999999999999999999999998 333333334988544
No 180
>PRK09436 thrA bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional
Probab=90.80 E-value=11 Score=41.71 Aligned_cols=106 Identities=6% Similarity=0.091 Sum_probs=69.3
Q ss_pred CCEEEEEEEeC---CCcchHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHHhh-
Q 017268 182 KDYTVITMRSK---DRPKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRHVDGLPISSEAERERVIQCLEAAIER- 257 (374)
Q Consensus 182 ~~~t~v~V~~~---DrpGLl~~i~~~l~~~glnI~~A~i~T~~g~~~dvF~V~~~~g~~~~~~~~~~~L~~~L~~~L~~- 257 (374)
.+...|+|.+. ++||+++++..+|+++|++|......+.. .--.|.|...+. +...+.|.+.+...+..
T Consensus 313 ~dvalIsV~G~gm~~~~G~~arIf~~La~~gI~V~mIsqssSe--~sIsf~V~~~d~-----~~av~~L~~~f~~el~~~ 385 (819)
T PRK09436 313 NNMAMFNVSGPGMKGMVGMASRVFAALSRAGISVVLITQSSSE--YSISFCVPQSDA-----AKAKRALEEEFALELKEG 385 (819)
T ss_pred CCEEEEEEEcCCCCCCcCHHHHHHHHHHHCCCcEEEEEcCCCC--ceEEEEEeHHHH-----HHHHHHHHHHHHHHhccC
Confidence 45677888764 68999999999999999999765443322 222455554211 11222333333222221
Q ss_pred cc------CCceEEEEEeC---CCccHHHHHHHHHHhCCceEEEEE
Q 017268 258 RA------SEGLELELCTE---DRVGLLSDITRIFRENSLSIKRAE 294 (374)
Q Consensus 258 r~------~~~tvieV~~~---DRpGLL~~It~~L~~~~i~I~~a~ 294 (374)
.. ..-.+|.|.+. ++||++.++..+|.+.||+|....
T Consensus 386 ~~~~i~~~~~valIsvvG~gm~~~~gv~arif~aL~~~~InI~~Is 431 (819)
T PRK09436 386 LLEPLEVEENLAIISVVGDGMRTHPGIAAKFFSALGRANINIVAIA 431 (819)
T ss_pred CcceEEEeCCEEEEEEEccCcccCcCHHHHHHHHHHHCCCCEEEEE
Confidence 11 23467888776 789999999999999999998765
No 181
>PRK06291 aspartate kinase; Provisional
Probab=90.76 E-value=22 Score=36.66 Aligned_cols=113 Identities=17% Similarity=0.165 Sum_probs=70.0
Q ss_pred CCCeEEEEEEeC---CccchHHHHHHHHHhcCCeEEEEEEEeeCCeeEEEEEEecCCCCCCCCCHHHHHHHHHHHHHHHc
Q 017268 46 TEEHTSIEFTGT---DRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLR 122 (374)
Q Consensus 46 ~~~~~~I~I~~~---DrpGL~a~I~~vL~~~glnI~~A~I~T~~~~~~dvf~V~~~~~g~~~~~~~~~~~l~~~L~~~L~ 122 (374)
..+...|+|.+. +.+|+++++..+|+.+|+||.--...+ ......|.|.. +..++..+.|.+.+.
T Consensus 318 ~~~valIsI~g~~m~~~~g~~arvf~~L~~~gI~V~mIsq~s--se~sIsf~V~~----------~d~~~av~~L~~~~~ 385 (465)
T PRK06291 318 IKNVALINISGAGMVGVPGTAARIFSALAEEGVNVIMISQGS--SESNISLVVDE----------ADLEKALKALRREFG 385 (465)
T ss_pred eCCEEEEEEeCCCCCCCccHHHHHHHHHHHCCCcEEEEEecC--CCceEEEEEeH----------HHHHHHHHHHHHHHH
Confidence 334566777764 689999999999999999998543222 22334555543 112233334444333
Q ss_pred CCCcccccccccCCCCCCcchhhhhhhcccCchhhhhhhhccccCCCCCCCEEEEEcCCCCEEEEEEEeC---CCcchHH
Q 017268 123 GYDDFRKAKTSLSPPGIMNRERRLHQIMFDDRDYERVEKAVGRVEDKSSRPQVTVLNIEKDYTVITMRSK---DRPKLLF 199 (374)
Q Consensus 123 ~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~t~v~V~~~---DrpGLl~ 199 (374)
... . ..|.+ ..+...|.|.+. +++|+.+
T Consensus 386 ~~~--------~--------------------------------------~~i~~---~~~~a~IsvvG~gm~~~~gv~~ 416 (465)
T PRK06291 386 EGL--------V--------------------------------------RDVTF---DKDVCVVAVVGAGMAGTPGVAG 416 (465)
T ss_pred Hhc--------C--------------------------------------cceEE---eCCEEEEEEEcCCccCCcChHH
Confidence 210 0 01112 124566777774 7999999
Q ss_pred HHHHHHHhCCceEEEEEEEe
Q 017268 200 DIVCTLTDMQYVVFHGMVNT 219 (374)
Q Consensus 200 ~i~~~l~~~glnI~~A~i~T 219 (374)
++..+|+..|+||..-...+
T Consensus 417 rif~aL~~~~I~v~~isqgs 436 (465)
T PRK06291 417 RIFSALGESGINIKMISQGS 436 (465)
T ss_pred HHHHHHHHCCCCEEEEEecc
Confidence 99999999999998444333
No 182
>TIGR00691 spoT_relA (p)ppGpp synthetase, RelA/SpoT family. (p)ppGpp is a regulatory metabolite of the stringent response, but appears also to be involved in antibiotic biosynthesis in some species.
Probab=90.71 E-value=1.6 Score=47.30 Aligned_cols=63 Identities=13% Similarity=0.129 Sum_probs=46.9
Q ss_pred EEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecC-CeEEEEEEEEeCCCCCCCCHHHHHHHHHHHH
Q 017268 184 YTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGR-TEAYQEFYIRHVDGLPISSEAERERVIQCLE 252 (374)
Q Consensus 184 ~t~v~V~~~DrpGLl~~i~~~l~~~glnI~~A~i~T~~-g~~~dvF~V~~~~g~~~~~~~~~~~L~~~L~ 252 (374)
.+.|.|.+.||+|+|++|+.+++.+++||.+.++.+.. +.+.-.|.|.-.+ -..+..|-..|.
T Consensus 610 ~v~I~I~~~dr~GlLadI~~~ia~~~~nI~~v~~~~~~~~~~~~~~~ieV~~------~~~L~~ii~~L~ 673 (683)
T TIGR00691 610 IVDINIEAVDRKGVLSDLTTAISENDSNIVSISTKTYGKREAILNITVEIKN------YKHLLKIMLKIK 673 (683)
T ss_pred EEEEEEEEecCCCHHHHHHHHHHHCCCCeEEEEeEEcCCCEEEEEEEEEECC------HHHHHHHHHHHh
Confidence 45788999999999999999999999999999998764 5554445554321 235555555554
No 183
>PRK06382 threonine dehydratase; Provisional
Probab=90.64 E-value=1.3 Score=44.86 Aligned_cols=64 Identities=25% Similarity=0.230 Sum_probs=45.2
Q ss_pred ceEEEEEeCCCccHHHHHHHHHHhCCceEEEEEEee----c-CCeeeeEEEEEcCCCCCCChhHHHHHHHHHhh
Q 017268 262 GLELELCTEDRVGLLSDITRIFRENSLSIKRAEIST----I-GGKVKDTFYVTDVTGNPVDPKIIDSIRRQIGH 330 (374)
Q Consensus 262 ~tvieV~~~DRpGLL~~It~~L~~~~i~I~~a~i~T----~-g~~~~D~Fyv~d~~g~~l~~~~~~~l~~~l~~ 330 (374)
.+.+.|.-+|+||-|.+|++.|.++|+||.+..... . .+.+.-+|.|... ++++.++|.+.|.+
T Consensus 330 ~~rl~v~v~D~pG~L~~l~~ii~~~~~nI~~v~~~~~~~~~~~~~~~v~i~vet~-----~~~~~~~v~~~L~~ 398 (406)
T PRK06382 330 LVRIECNIPDRPGNLYRIANAIASNGGNIYHAEVDNLRKETPPGFQSVTFTVNVR-----GQDHLDRILNALRE 398 (406)
T ss_pred EEEEEEEcCCCCCHHHHHHHHHhcCCCcEEEEEEeeccccCCCCcEEEEEEEEeC-----CHHHHHHHHHHHHH
Confidence 578999999999999999999999999998876541 1 2334455655333 12444566666554
No 184
>TIGR00657 asp_kinases aspartate kinase. The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. This may be a feature of a number of closely related forms, including a paralog from B. subtilis.
Probab=90.33 E-value=8 Score=39.52 Aligned_cols=101 Identities=13% Similarity=0.178 Sum_probs=64.7
Q ss_pred CEEEEEEEeCC-C-cchHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHHhhc--
Q 017268 183 DYTVITMRSKD-R-PKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRHVDGLPISSEAERERVIQCLEAAIERR-- 258 (374)
Q Consensus 183 ~~t~v~V~~~D-r-pGLl~~i~~~l~~~glnI~~A~i~T~~g~~~dvF~V~~~~g~~~~~~~~~~~L~~~L~~~L~~r-- 258 (374)
+...|+|.+.+ . +|+++++..+|+++|++|......+.. ..-.|.|... ..++..+.|.......
T Consensus 301 ~v~~Isv~g~~~~~~g~la~if~~L~~~~I~I~~i~q~~se--~sIs~~I~~~---------~~~~a~~~L~~~~~~~~~ 369 (441)
T TIGR00657 301 NQARVTVSGLGMKGPGFLARVFGALAEAGINVDLITQSSSE--TSISFTVDKE---------DADQAKTLLKSELNLSAL 369 (441)
T ss_pred CEEEEEEECCCCCCccHHHHHHHHHHHcCCeEEEEEecCCC--ceEEEEEEHH---------HHHHHHHHHHHHHHhcCc
Confidence 45667776543 3 799999999999999999766533322 1123555442 1222222232211111
Q ss_pred -----cCCceEEEEEe---CCCccHHHHHHHHHHhCCceEEEEE
Q 017268 259 -----ASEGLELELCT---EDRVGLLSDITRIFRENSLSIKRAE 294 (374)
Q Consensus 259 -----~~~~tvieV~~---~DRpGLL~~It~~L~~~~i~I~~a~ 294 (374)
...-..|.|.+ .++||++++|.++|++.||+|....
T Consensus 370 ~~I~~~~~~a~VsvvG~~~~~~~g~~a~if~~La~~~Inv~~i~ 413 (441)
T TIGR00657 370 SSVEVEKGLAKVSLVGAGMKSAPGVASKIFEALAQNGINIEMIS 413 (441)
T ss_pred ceEEEcCCeEEEEEEcCCCCCCCchHHHHHHHHHHCCCCEEEEE
Confidence 12246788865 4889999999999999999998775
No 185
>PRK06545 prephenate dehydrogenase; Validated
Probab=89.99 E-value=1.2 Score=44.26 Aligned_cols=47 Identities=19% Similarity=0.311 Sum_probs=38.6
Q ss_pred ceEEEEEeCCCccHHHHHHHHHHhCCceEEEEEEeecCCeeeeEEEE
Q 017268 262 GLELELCTEDRVGLLSDITRIFRENSLSIKRAEISTIGGKVKDTFYV 308 (374)
Q Consensus 262 ~tvieV~~~DRpGLL~~It~~L~~~~i~I~~a~i~T~g~~~~D~Fyv 308 (374)
.+.+.|.-+||||-|.+|+..|.+.||||.+.+|.-..+...-+..+
T Consensus 290 ~~~~~v~v~d~pg~~~~~~~~~~~~~i~i~~~~i~~~~~~~~g~~~~ 336 (359)
T PRK06545 290 FYDLYVDVPDEPGVIARVTAILGEEGISIENLRILEAREDIHGVLQI 336 (359)
T ss_pred ceEEEEeCCCCCCHHHHHHHHHHHcCCCeecceeeeccCCcCceEEE
Confidence 48999999999999999999999999999999996544444334444
No 186
>PRK12483 threonine dehydratase; Reviewed
Probab=89.94 E-value=13 Score=38.91 Aligned_cols=135 Identities=12% Similarity=0.104 Sum_probs=81.6
Q ss_pred CCCEEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEEeCCCCCCCCHHHH-HHHHHHHHHH-----
Q 017268 181 EKDYTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRHVDGLPISSEAER-ERVIQCLEAA----- 254 (374)
Q Consensus 181 ~~~~t~v~V~~~DrpGLl~~i~~~l~~~glnI~~A~i~T~~g~~~dvF~V~~~~g~~~~~~~~~-~~L~~~L~~~----- 254 (374)
......+.|.-+||||-|.+++.++... ||....-......-..++....-.+ .+.. ++|.+.|.+.
T Consensus 342 ~~r~~~~~v~~~d~pG~l~~~~~~l~~~--ni~~~~~~~~~~~~~~v~v~ie~~~-----~~~~~~~i~~~l~~~g~~~~ 414 (521)
T PRK12483 342 EQREAIIAVTIPEQPGSFKAFCAALGKR--QITEFNYRYADAREAHLFVGVQTHP-----RHDPRAQLLASLRAQGFPVL 414 (521)
T ss_pred cCCEEEEEEEeCCCCCHHHHHHHHhhhc--CeEEEEEEecCCCeeEEEEEEEeCC-----hhhhHHHHHHHHHHCCCCeE
Confidence 3456778999999999999999999988 8876655543322222332222111 1233 6677776542
Q ss_pred -H--------------hhccC---CceEEEEEeCCCccHHHHHHHHHHh-CCceEEEEEEeecCCeeeeEEEEEcCCCCC
Q 017268 255 -I--------------ERRAS---EGLELELCTEDRVGLLSDITRIFRE-NSLSIKRAEISTIGGKVKDTFYVTDVTGNP 315 (374)
Q Consensus 255 -L--------------~~r~~---~~tvieV~~~DRpGLL~~It~~L~~-~~i~I~~a~i~T~g~~~~D~Fyv~d~~g~~ 315 (374)
+ .++.+ +.-++.|.-|.|||-|.++++.|.. ++|.-.+=+- .|.....+|. |-.
T Consensus 415 dlsdne~~k~h~r~~~g~~~~~~~~E~~~~v~iPE~pGa~~~f~~~l~~~~niTeF~YR~--~~~~~a~v~v-----gi~ 487 (521)
T PRK12483 415 DLTDDELAKLHIRHMVGGRAPLAHDERLFRFEFPERPGALMKFLSRLGPRWNISLFHYRN--HGAADGRVLA-----GLQ 487 (521)
T ss_pred ECCCCHHHHHHHHhccCCCCCCCCceEEEEEEcCCCCcHHHHHHHHhCCCcceeeeeecC--CCCCceEEEE-----EEe
Confidence 0 01222 3468999999999999999999996 3555544332 3555555653 222
Q ss_pred CChhHHHHHHHHHh
Q 017268 316 VDPKIIDSIRRQIG 329 (374)
Q Consensus 316 l~~~~~~~l~~~l~ 329 (374)
+.++..+++.+.|.
T Consensus 488 ~~~~~~~~~~~~l~ 501 (521)
T PRK12483 488 VPEDERAALDAALA 501 (521)
T ss_pred eChhHHHHHHHHHH
Confidence 22234455555554
No 187
>cd04898 ACT_ACR-like_4 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=89.87 E-value=0.85 Score=34.78 Aligned_cols=69 Identities=23% Similarity=0.330 Sum_probs=46.9
Q ss_pred EEEEeCCccchHHHHHHHHHhcCCeEEEEEEEee--CCe-eEE-EEEEecCCCCCCCCCHHHHHHHHHHHHHHHc
Q 017268 52 IEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTH--NDR-AAA-VVHVTDHSTGYAIKDPKRLSTIKELLFNVLR 122 (374)
Q Consensus 52 I~I~~~DrpGL~a~I~~vL~~~glnI~~A~I~T~--~~~-~~d-vf~V~~~~~g~~~~~~~~~~~l~~~L~~~L~ 122 (374)
|.++++-||-.|++++-+|..+|.-|.+|.|--. ++. .+. -|.+.+ .+..+........+...+.+.|.
T Consensus 3 VElsGkGRPrVfyDvTlALK~L~i~IFsaeIgR~~~~~r~wEvyR~LL~e--~~~~~~~~~~r~~i~drv~~~lm 75 (77)
T cd04898 3 VELSGKGRPRVFYDITLALKKLGICIFSAEIGRHSTGDRQWEVYRVLLLE--HDRLKLGGRQRSKVVDRVTKTLM 75 (77)
T ss_pred ccccCCCCcceeeehHHHHHHhccEEEehhhhhhhcCCeeEEEEEEeecC--CCccccchHHHHHHHHHHHHHHh
Confidence 5788999999999999999999999999999653 332 222 344444 23334433344566666666554
No 188
>KOG2663 consensus Acetolactate synthase, small subunit [Amino acid transport and metabolism]
Probab=89.72 E-value=0.65 Score=43.51 Aligned_cols=64 Identities=17% Similarity=0.160 Sum_probs=45.3
Q ss_pred EEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCeEEE--EEEEEeCCCCCCCCHHHHHHHHHHHHHH
Q 017268 184 YTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQ--EFYIRHVDGLPISSEAERERVIQCLEAA 254 (374)
Q Consensus 184 ~t~v~V~~~DrpGLl~~i~~~l~~~glnI~~A~i~T~~g~~~d--vF~V~~~~g~~~~~~~~~~~L~~~L~~~ 254 (374)
.-++.+...|.||++.+|+++|+..|+||.+.-+.-....++- +..+...+ .-.++.++.|++.
T Consensus 77 rHvinclVqnEpGvlsRisGvlAaRGfNIdSLvVc~tevk~LsrmTIVl~Gtd-------~VveQa~rQiedl 142 (309)
T KOG2663|consen 77 RHVINCLVQNEPGVLSRISGVLAARGFNIDSLVVCLTEVKALSRMTIVLQGTD-------GVVEQARRQIEDL 142 (309)
T ss_pred ceeEEEEecCCchHHHHHHHHHHhccCCchheeeechhhhhhhhceEEEeccH-------HHHHHHHHHHHHh
Confidence 3458999999999999999999999999998887654444433 34444432 2455555555543
No 189
>PRK09181 aspartate kinase; Validated
Probab=89.71 E-value=7.1 Score=40.45 Aligned_cols=130 Identities=15% Similarity=0.117 Sum_probs=80.2
Q ss_pred CEEEEEEEeC---CCcchHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHHhh-c
Q 017268 183 DYTVITMRSK---DRPKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRHVDGLPISSEAERERVIQCLEAAIER-R 258 (374)
Q Consensus 183 ~~t~v~V~~~---DrpGLl~~i~~~l~~~glnI~~A~i~T~~g~~~dvF~V~~~~g~~~~~~~~~~~L~~~L~~~L~~-r 258 (374)
+.+.|+|.+. +.+|+++++..+|+++|++|. .+.+.. ..-.|.|... ...++++.+.|...+.. .
T Consensus 328 ~~~~i~i~~~~~~~~~g~~~~if~~l~~~~i~v~--~i~ss~--~sis~~v~~~-------~~~~~~~~~~L~~~~~~~~ 396 (475)
T PRK09181 328 KVFALEVFDQDMVGEDGYDLEILEILTRHKVSYI--SKATNA--NTITHYLWGS-------LKTLKRVIAELEKRYPNAE 396 (475)
T ss_pred CEEEEEEcCCCCCCcchHHHHHHHHHHHcCCeEE--EEEecC--cEEEEEEcCC-------hHHHHHHHHHHHHhcCCce
Confidence 5667777543 789999999999999999997 233322 2224555432 12344555555543321 1
Q ss_pred --cCCceEEEEEeCC--CccHHHHHHHHHHhCCceEEEEEEeecCCeeeeEEEEEcCCCCCCChhHHHHHHHHHh
Q 017268 259 --ASEGLELELCTED--RVGLLSDITRIFRENSLSIKRAEISTIGGKVKDTFYVTDVTGNPVDPKIIDSIRRQIG 329 (374)
Q Consensus 259 --~~~~tvieV~~~D--RpGLL~~It~~L~~~~i~I~~a~i~T~g~~~~D~Fyv~d~~g~~l~~~~~~~l~~~l~ 329 (374)
...-.+|.|.+.. +||+..++..+|++.||||....-.+ ....-.|.|...+. .+.+..|-++|.
T Consensus 397 i~~~~~a~VsvVG~gm~~~gv~ak~f~aL~~~~Ini~~i~qg~--se~~Is~vV~~~d~----~~Av~~lH~~f~ 465 (475)
T PRK09181 397 VTVRKVAIVSAIGSNIAVPGVLAKAVQALAEAGINVLALHQSM--RQVNMQFVVDEDDY----EKAICALHEALV 465 (475)
T ss_pred EEECCceEEEEeCCCCCcccHHHHHHHHHHHCCCCeEEEEecC--CcceEEEEEeHHHH----HHHHHHHHHHHh
Confidence 2334678887764 89999999999999999998765332 12233455533211 124455555554
No 190
>PF13840 ACT_7: ACT domain ; PDB: 3S1T_A 1ZHV_A 3AB4_K 3AB2_O 2DTJ_A 3AAW_A 2RE1_B 3MAH_A 1ZVP_D.
Probab=89.26 E-value=1.7 Score=31.98 Aligned_cols=34 Identities=21% Similarity=0.305 Sum_probs=28.6
Q ss_pred CEEEEEEEeC----CCcchHHHHHHHHHhCCceEEEEE
Q 017268 183 DYTVITMRSK----DRPKLLFDIVCTLTDMQYVVFHGM 216 (374)
Q Consensus 183 ~~t~v~V~~~----DrpGLl~~i~~~l~~~glnI~~A~ 216 (374)
+...|+|.++ |.||++++++..|++.|+||....
T Consensus 5 ~~~~i~v~g~g~~~~~~Gv~a~i~~~La~~~I~i~~is 42 (65)
T PF13840_consen 5 DWAKISVVGPGLRFDVPGVAAKIFSALAEAGINIFMIS 42 (65)
T ss_dssp EEEEEEEEEECGTTTSHHHHHHHHHHHHHTTS-ECEEE
T ss_pred CEEEEEEEccccCCCcccHHHHHHHHHHHCCCCEEEEE
Confidence 4567888877 799999999999999999998666
No 191
>COG0317 SpoT Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]
Probab=88.84 E-value=2.3 Score=45.84 Aligned_cols=65 Identities=23% Similarity=0.193 Sum_probs=46.7
Q ss_pred CCEEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCC-eEEEEEEEEeCCCCCCCCHHHHHHHHHHHH
Q 017268 182 KDYTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGRT-EAYQEFYIRHVDGLPISSEAERERVIQCLE 252 (374)
Q Consensus 182 ~~~t~v~V~~~DrpGLl~~i~~~l~~~glnI~~A~i~T~~g-~~~dvF~V~~~~g~~~~~~~~~~~L~~~L~ 252 (374)
.-.+.|.|.+.||+|+|++|+.+++..+.||......+.++ .+.-.|.+.-.+ -..+..|-..|.
T Consensus 625 ~f~~~i~v~~~~r~glL~~i~~~i~~~~~ni~~v~~~~~~~~~~~~~~~i~v~n------~~~L~~i~~~l~ 690 (701)
T COG0317 625 VYPVDIEIRAYDRSGLLRDVSQVLANEKINVLGVNTRSDKDQFATMQFTIEVKN------LNHLGRVLARLK 690 (701)
T ss_pred ceEEEEEEEEccccchHHHHHHHHHhCCCceEEeeccccCCceEEEEEEEEECc------HHHHHHHHHHHh
Confidence 35568899999999999999999999999999999988644 444334444321 235555555543
No 192
>PLN02317 arogenate dehydratase
Probab=88.82 E-value=1.8 Score=43.45 Aligned_cols=53 Identities=17% Similarity=0.293 Sum_probs=41.9
Q ss_pred eEEEEEeCCCccHHHHHHHHHHhCCceEEEEEEeecCCe---------------eeeEEEEEcCCCCCC
Q 017268 263 LELELCTEDRVGLLSDITRIFRENSLSIKRAEISTIGGK---------------VKDTFYVTDVTGNPV 316 (374)
Q Consensus 263 tvieV~~~DRpGLL~~It~~L~~~~i~I~~a~i~T~g~~---------------~~D~Fyv~d~~g~~l 316 (374)
|.|-+.-.|+||.|+++..+|+.+|||+.+..-.-...+ -.=.||| |.+|..-
T Consensus 284 TSivfsl~~~pG~L~k~L~~Fa~~~INLtkIESRP~~~~~~~~~~~~~~~~~~~~eY~FyV-D~eg~~~ 351 (382)
T PLN02317 284 TSIVFSLEEGPGVLFKALAVFALRDINLTKIESRPQRKRPLRVVDDSNSGTAKYFDYLFYV-DFEASMA 351 (382)
T ss_pred EEEEEEcCCCCchHHHHHHHHHHCCCCEEEEEeeecCCCCccccccccccccccccEEEEE-EEEcCcC
Confidence 667777789999999999999999999999987765444 2348888 5456543
No 193
>PRK09034 aspartate kinase; Reviewed
Probab=88.76 E-value=31 Score=35.48 Aligned_cols=111 Identities=14% Similarity=0.164 Sum_probs=66.9
Q ss_pred CeEEEEEEe---CCccchHHHHHHHHHhcCCeEEEEEEEeeCCeeEEEEEEecCCCCCCCCCHHHHHHHHHHHHHHHcCC
Q 017268 48 EHTSIEFTG---TDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLRGY 124 (374)
Q Consensus 48 ~~~~I~I~~---~DrpGL~a~I~~vL~~~glnI~~A~I~T~~~~~~dvf~V~~~~~g~~~~~~~~~~~l~~~L~~~L~~~ 124 (374)
+...|++.+ .+.+|.+++|..+|+.+|+||.-- + .+.....|.|... . + +...+..+...|...+
T Consensus 307 ~i~~Itv~~~~~~~~~g~~a~if~~la~~~I~Vd~i---~-ss~~sis~~v~~~---~-~-~~a~~~~l~~el~~~~--- 374 (454)
T PRK09034 307 GFTSIYISKYLMNREVGFGRKVLQILEDHGISYEHM---P-SGIDDLSIIIRER---Q-L-TPKKEDEILAEIKQEL--- 374 (454)
T ss_pred CEEEEEEccCCCCCCccHHHHHHHHHHHcCCeEEEE---c-CCCcEEEEEEeHH---H-h-hHHHHHHHHHHHHHhh---
Confidence 345566653 668899999999999999999864 2 2233456777541 1 1 0000012222222111
Q ss_pred CcccccccccCCCCCCcchhhhhhhcccCchhhhhhhhccccCCCCCCCEEEEEcCCCCEEEEEEEe---CCCcchHHHH
Q 017268 125 DDFRKAKTSLSPPGIMNRERRLHQIMFDDRDYERVEKAVGRVEDKSSRPQVTVLNIEKDYTVITMRS---KDRPKLLFDI 201 (374)
Q Consensus 125 ~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~t~v~V~~---~DrpGLl~~i 201 (374)
. . ..|.+ ..+...|.+.+ .+.||+++++
T Consensus 375 -~-------~--------------------------------------~~I~~---~~~va~VsivG~g~~~~~gv~ari 405 (454)
T PRK09034 375 -N-------P--------------------------------------DELEI---EHDLAIIMVVGEGMRQTVGVAAKI 405 (454)
T ss_pred -C-------C--------------------------------------ceEEE---eCCEEEEEEECCCCCCCccHHHHH
Confidence 0 0 01122 22456677755 4789999999
Q ss_pred HHHHHhCCceEEEEEEEe
Q 017268 202 VCTLTDMQYVVFHGMVNT 219 (374)
Q Consensus 202 ~~~l~~~glnI~~A~i~T 219 (374)
..+|+++|+||......+
T Consensus 406 f~aL~~~~InV~mIsq~~ 423 (454)
T PRK09034 406 TKALAEANINIQMINQGS 423 (454)
T ss_pred HHHHHHCCCCEEEEEecC
Confidence 999999999998665434
No 194
>COG0317 SpoT Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]
Probab=88.66 E-value=1.9 Score=46.47 Aligned_cols=50 Identities=28% Similarity=0.387 Sum_probs=40.9
Q ss_pred CCeEEEEEEeCCccchHHHHHHHHHhcCCeEEEEEEEeeCCeeEE-EEEEe
Q 017268 47 EEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAA-VVHVT 96 (374)
Q Consensus 47 ~~~~~I~I~~~DrpGL~a~I~~vL~~~glnI~~A~I~T~~~~~~d-vf~V~ 96 (374)
.-...|.|.+.||+|||++|+.+|+..+.||.+....+.++++.. .|.+.
T Consensus 625 ~f~~~i~v~~~~r~glL~~i~~~i~~~~~ni~~v~~~~~~~~~~~~~~~i~ 675 (701)
T COG0317 625 VYPVDIEIRAYDRSGLLRDVSQVLANEKINVLGVNTRSDKDQFATMQFTIE 675 (701)
T ss_pred ceEEEEEEEEccccchHHHHHHHHHhCCCceEEeeccccCCceEEEEEEEE
Confidence 345679999999999999999999999999999998887555553 44443
No 195
>PLN02551 aspartokinase
Probab=88.61 E-value=15 Score=38.67 Aligned_cols=132 Identities=16% Similarity=0.195 Sum_probs=78.8
Q ss_pred CCEEEEEEEeC---CCcchHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEEeCCCCCCCCHHHHHHHHHHHHH---HH
Q 017268 182 KDYTVITMRSK---DRPKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRHVDGLPISSEAERERVIQCLEA---AI 255 (374)
Q Consensus 182 ~~~t~v~V~~~---DrpGLl~~i~~~l~~~glnI~~A~i~T~~g~~~dvF~V~~~~g~~~~~~~~~~~L~~~L~~---~L 255 (374)
.+.+.|+|.+. +.+|.++++...|+++|++|.-.. +.. ..-.|.+...+-. ..+.+++.+.. .|
T Consensus 364 ~~v~li~i~~~~m~~~~g~~arvf~~l~~~~I~Vd~Is--sSe--~sIs~~v~~~~~~------~~~~i~~~l~~l~~el 433 (521)
T PLN02551 364 RNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVA--TSE--VSISLTLDPSKLW------SRELIQQELDHLVEEL 433 (521)
T ss_pred CCeEEEEEecCCCCCcccHHHHHHHHHHHcCCcEEEEe--ccC--CEEEEEEehhHhh------hhhhHHHHHHHHHHHh
Confidence 35667788655 689999999999999999998662 222 2224556543211 11122222221 22
Q ss_pred hh--cc---CCceEEEEEeC--CCccHHHHHHHHHHhCCceEEEEEEeecCCeeeeEEEEEcCCCCCCChhHHHHHHHHH
Q 017268 256 ER--RA---SEGLELELCTE--DRVGLLSDITRIFRENSLSIKRAEISTIGGKVKDTFYVTDVTGNPVDPKIIDSIRRQI 328 (374)
Q Consensus 256 ~~--r~---~~~tvieV~~~--DRpGLL~~It~~L~~~~i~I~~a~i~T~g~~~~D~Fyv~d~~g~~l~~~~~~~l~~~l 328 (374)
.. .. ..-.+|.|.+. .+||++.++..+|++.||||......+ ....-.|.|.+.+. ++.+..|.++|
T Consensus 434 ~~~~~V~v~~~vAiISvVG~~~~~~gvaariF~aLa~~gInV~mIsqga--SeinIS~vV~~~d~----~~Av~aLH~~F 507 (521)
T PLN02551 434 EKIAVVNLLQGRSIISLIGNVQRSSLILEKVFRVLRTNGVNVQMISQGA--SKVNISLIVNDDEA----EQCVRALHSAF 507 (521)
T ss_pred hcCCeEEEeCCEEEEEEEccCCCCccHHHHHHHHHHHCCCCeEEEEecC--CCcEEEEEEeHHHH----HHHHHHHHHHH
Confidence 21 11 23456777654 689999999999999999998876443 22333455543311 13455666666
Q ss_pred h
Q 017268 329 G 329 (374)
Q Consensus 329 ~ 329 (374)
.
T Consensus 508 f 508 (521)
T PLN02551 508 F 508 (521)
T ss_pred h
Confidence 4
No 196
>PRK06382 threonine dehydratase; Provisional
Probab=88.53 E-value=3.1 Score=42.05 Aligned_cols=52 Identities=17% Similarity=0.188 Sum_probs=40.2
Q ss_pred CCCEEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEe-----cCCeEEEEEEEEe
Q 017268 181 EKDYTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNT-----GRTEAYQEFYIRH 232 (374)
Q Consensus 181 ~~~~t~v~V~~~DrpGLl~~i~~~l~~~glnI~~A~i~T-----~~g~~~dvF~V~~ 232 (374)
....+.+.|..+|+||-|.+++.++.++|+||.+..... ..+...-+|.|..
T Consensus 327 ~~~~~rl~v~v~D~pG~L~~l~~ii~~~~~nI~~v~~~~~~~~~~~~~~~v~i~vet 383 (406)
T PRK06382 327 LGQLVRIECNIPDRPGNLYRIANAIASNGGNIYHAEVDNLRKETPPGFQSVTFTVNV 383 (406)
T ss_pred cCCEEEEEEEcCCCCCHHHHHHHHHhcCCCcEEEEEEeeccccCCCCcEEEEEEEEe
Confidence 456788999999999999999999999999998776541 1345555565654
No 197
>PRK14646 hypothetical protein; Provisional
Probab=88.39 E-value=6.3 Score=34.52 Aligned_cols=94 Identities=13% Similarity=0.082 Sum_probs=64.5
Q ss_pred chHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHHhh--ccCCceEEEEEeCCCc
Q 017268 196 KLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRHVDGLPISSEAERERVIQCLEAAIER--RASEGLELELCTEDRV 273 (374)
Q Consensus 196 GLl~~i~~~l~~~glnI~~A~i~T~~g~~~dvF~V~~~~g~~~~~~~~~~~L~~~L~~~L~~--r~~~~tvieV~~~DRp 273 (374)
-+...+..++..+|+.+.+......++..+-..+|..++|..++- +.++.+-+.+...|+. ..+..|.+||++|.=-
T Consensus 8 ~i~~li~p~~~~~G~eLvdve~~~~~~~~~LrV~IDk~~g~gVtl-dDC~~vSr~is~~LD~~D~i~~~Y~LEVSSPGld 86 (155)
T PRK14646 8 KLEILLEKVANEFDLKICSLNIQTNQNPIVIKIIIKKTNGDDISL-DDCALFNTPASEEIENSNLLNCSYVLEISSQGVS 86 (155)
T ss_pred HHHHHHHHHHHHcCCEEEEEEEEeCCCCeEEEEEEECCCCCCccH-HHHHHHHHHHHHHhCcCCCCCCCeEEEEcCCCCC
Confidence 456677889999999999999998776544456666554444443 4778888888888863 3567899999987333
Q ss_pred cHHHHHHHHHHhCCceE
Q 017268 274 GLLSDITRIFRENSLSI 290 (374)
Q Consensus 274 GLL~~It~~L~~~~i~I 290 (374)
--|..--.+-.-.|=.|
T Consensus 87 RpL~~~~df~r~~G~~v 103 (155)
T PRK14646 87 DELTSERDFKTFKGFPV 103 (155)
T ss_pred CcCCCHHHHHHhCCCEE
Confidence 33555555555555443
No 198
>PRK06349 homoserine dehydrogenase; Provisional
Probab=88.39 E-value=2 Score=43.84 Aligned_cols=65 Identities=28% Similarity=0.349 Sum_probs=47.8
Q ss_pred ceEEEEEeCCCccHHHHHHHHHHhCCceEEEEEEeecCCeeeeEEEEEcCCCCCCChhHHHHHHHHHhh
Q 017268 262 GLELELCTEDRVGLLSDITRIFRENSLSIKRAEISTIGGKVKDTFYVTDVTGNPVDPKIIDSIRRQIGH 330 (374)
Q Consensus 262 ~tvieV~~~DRpGLL~~It~~L~~~~i~I~~a~i~T~g~~~~D~Fyv~d~~g~~l~~~~~~~l~~~l~~ 330 (374)
.+.|.+...|+||.|.+|+.+|.++|++|.+..-....+....++++++.. +...++++.++|..
T Consensus 348 ~yylRl~v~d~pGvLa~I~~~f~~~~vsI~si~q~~~~~~~~~ivivT~~~----~e~~l~~~i~~L~~ 412 (426)
T PRK06349 348 KYYLRLLVADKPGVLAKIAAIFAENGISIESILQKGAGGEGAEIVIVTHET----SEAALRAALAAIEA 412 (426)
T ss_pred eEEEEEEecCCcchHHHHHHHHhhcCccEEEEEeccCCCCceeEEEEEEeC----CHHHHHHHHHHHhc
Confidence 478999999999999999999999999999887654333456677777642 23445555555554
No 199
>cd04904 ACT_AAAH ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe; TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines; and TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxy
Probab=88.26 E-value=2.8 Score=31.64 Aligned_cols=46 Identities=13% Similarity=0.155 Sum_probs=34.2
Q ss_pred EEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecC-CeEEEEEEEEe
Q 017268 187 ITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGR-TEAYQEFYIRH 232 (374)
Q Consensus 187 v~V~~~DrpGLl~~i~~~l~~~glnI~~A~i~T~~-g~~~dvF~V~~ 232 (374)
+.+..+|+||-|+++...|+.+|+|+..-...-.. +...-.|+|.-
T Consensus 3 l~f~l~~~pG~L~~vL~~f~~~~iNlt~IeSRP~~~~~~~y~Ffvd~ 49 (74)
T cd04904 3 LIFSLKEEVGALARALKLFEEFGVNLTHIESRPSRRNGSEYEFFVDC 49 (74)
T ss_pred EEEEeCCCCcHHHHHHHHHHHCCCcEEEEECCCCCCCCceEEEEEEE
Confidence 44555899999999999999999999877665533 33344566654
No 200
>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=87.91 E-value=4.4 Score=31.38 Aligned_cols=61 Identities=21% Similarity=0.300 Sum_probs=38.0
Q ss_pred EEEEEeCCccchHHHHHHHHHhcCCeEEEEEEEeeC-CeeEEEEEEecCCCCCCCCCHHHHHHHHHHHHH
Q 017268 51 SIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHN-DRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFN 119 (374)
Q Consensus 51 ~I~I~~~DrpGL~a~I~~vL~~~glnI~~A~I~T~~-~~~~dvf~V~~~~~g~~~~~~~~~~~l~~~L~~ 119 (374)
.+.|.-+|+||=|++++.+|+ +.||.+..-.... +.....+.+.- .+. ++..+.+.+.|.+
T Consensus 3 vl~v~ipD~PG~L~~ll~~l~--~anI~~~~y~~~~~~~~~v~i~ie~--~~~----~~~~~~i~~~L~~ 64 (85)
T cd04906 3 LLAVTIPERPGSFKKFCELIG--PRNITEFNYRYADEKDAHIFVGVSV--ANG----AEELAELLEDLKS 64 (85)
T ss_pred EEEEecCCCCcHHHHHHHHhC--CCceeEEEEEccCCCeeEEEEEEEe--CCc----HHHHHHHHHHHHH
Confidence 477889999999999999999 7777754443332 22222333322 110 2455677777766
No 201
>cd04932 ACT_AKiii-LysC-EC_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The E. coli AKIII (LysC) binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=87.85 E-value=4.9 Score=30.52 Aligned_cols=61 Identities=10% Similarity=0.267 Sum_probs=38.7
Q ss_pred EEEEE---eCCCccHHHHHHHHHHhCCceEEEEEEeecCCeeeeEEEEEcCCCCCCChhHHH-HHHHHHhh
Q 017268 264 ELELC---TEDRVGLLSDITRIFRENSLSIKRAEISTIGGKVKDTFYVTDVTGNPVDPKIID-SIRRQIGH 330 (374)
Q Consensus 264 vieV~---~~DRpGLL~~It~~L~~~~i~I~~a~i~T~g~~~~D~Fyv~d~~g~~l~~~~~~-~l~~~l~~ 330 (374)
.|+|. .+++||++++|..+|+++||+|...- | ++ ..=.|-|... .+..++.+. +|...|..
T Consensus 3 ~ItI~~~~~~~~~g~~~~IF~~La~~~I~VDmI~--~-s~-~~iSftv~~~--d~~~~~~~~~~l~~~l~~ 67 (75)
T cd04932 3 LVTLKSPNMLHAQGFLAKVFGILAKHNISVDLIT--T-SE-ISVALTLDNT--GSTSDQLLTQALLKELSQ 67 (75)
T ss_pred EEEEecCCCCCCcCHHHHHHHHHHHcCCcEEEEe--e-cC-CEEEEEEecc--ccchhHHHHHHHHHHHHh
Confidence 45553 57899999999999999999999884 2 22 3344555432 222123333 56666554
No 202
>PRK08210 aspartate kinase I; Reviewed
Probab=87.59 E-value=33 Score=34.49 Aligned_cols=34 Identities=24% Similarity=0.180 Sum_probs=26.8
Q ss_pred CCeEEEEEEeCCc-cchHHHHHHHHHhcCCeEEEE
Q 017268 47 EEHTSIEFTGTDR-PGLFSEVCAVLADLHCNVVNA 80 (374)
Q Consensus 47 ~~~~~I~I~~~Dr-pGL~a~I~~vL~~~glnI~~A 80 (374)
.+...|+|...+. +|.+++|..+|+.+|+||.--
T Consensus 269 ~~i~~isv~~~~~~~g~la~If~~L~~~~I~i~~i 303 (403)
T PRK08210 269 SNVTQIKVKAKENAYDLQQEVFKALAEAGISVDFI 303 (403)
T ss_pred CCcEEEEEecCCCcchHHHHHHHHHHHcCCeEEEE
Confidence 3445566665454 999999999999999999866
No 203
>PRK14636 hypothetical protein; Provisional
Probab=87.43 E-value=6.4 Score=35.26 Aligned_cols=91 Identities=11% Similarity=0.081 Sum_probs=61.9
Q ss_pred CcchHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHHhhc--cCCceEEEEEeC-
Q 017268 194 RPKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRHVDGLPISSEAERERVIQCLEAAIERR--ASEGLELELCTE- 270 (374)
Q Consensus 194 rpGLl~~i~~~l~~~glnI~~A~i~T~~g~~~dvF~V~~~~g~~~~~~~~~~~L~~~L~~~L~~r--~~~~tvieV~~~- 270 (374)
.+-+...+..++..+|+.+.+..+...++..+-..+|..+++..++- +.++++-+.|...|+.. .+..|.+||+++
T Consensus 4 ~~~i~~lvep~~~~~GleLvdve~~~~~~~~~lrV~ID~~~~ggV~l-DDC~~vSr~Is~~LD~~d~i~~~Y~LEVSSPG 82 (176)
T PRK14636 4 IAALTALIEPEAKALGLDLVRVAMFGGKSDPTLQIMAERPDTRQLVI-EDCAALSRRLSDVFDELDPIEDAYRLEVSSPG 82 (176)
T ss_pred HHHHHHHHHHHHHHcCCEEEEEEEEcCCCCeEEEEEEECCCCCCcCH-HHHHHHHHHHHHHhccCcCCCCCeEEEEeCCC
Confidence 34466677888999999999999988765544455565554333443 47888888888888642 467899999987
Q ss_pred -CCccHHHHHHHHHHhCC
Q 017268 271 -DRVGLLSDITRIFRENS 287 (374)
Q Consensus 271 -DRpGLL~~It~~L~~~~ 287 (374)
||| |..--..-.-.|
T Consensus 83 ldRp--L~~~~df~r~~G 98 (176)
T PRK14636 83 IDRP--LTRPKDFADWAG 98 (176)
T ss_pred CCCC--CCCHHHHHHhCC
Confidence 665 333334433333
No 204
>cd04935 ACT_AKiii-DAPDC_1 ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. This CD includes the first of two ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. Aspartokinase (AK) is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The lysA gene encodes the enzyme DAPDC, a pyridoxal-5'-phosphate (PLP)-dependent enzyme which catalyzes the final step in the lysine biosynthetic pathway converting meso-diaminopimelic acid (DAP) to l-lysine. Tandem ACT domains are positioned centrally with the AK catalytic domain N-terminal and the DAPDC domains C-terminal. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=87.30 E-value=3.7 Score=31.20 Aligned_cols=57 Identities=21% Similarity=0.401 Sum_probs=38.0
Q ss_pred eCCCccHHHHHHHHHHhCCceEEEEEEeecCCeeeeEEEEEcCCCCCCChhHHHHHHHHHhh
Q 017268 269 TEDRVGLLSDITRIFRENSLSIKRAEISTIGGKVKDTFYVTDVTGNPVDPKIIDSIRRQIGH 330 (374)
Q Consensus 269 ~~DRpGLL~~It~~L~~~~i~I~~a~i~T~g~~~~D~Fyv~d~~g~~l~~~~~~~l~~~l~~ 330 (374)
.++.||++++|.++|+++||+|...- + ++ ..=.|-|.... .-+.++.+++|.++|..
T Consensus 11 ~~~~~g~~~~IF~~La~~~I~vDmI~--~-s~-~~isftv~~~~-~~~~~~~~~~l~~el~~ 67 (75)
T cd04935 11 MWQQVGFLADVFAPFKKHGVSVDLVS--T-SE-TNVTVSLDPDP-NGLDPDVLDALLDDLNQ 67 (75)
T ss_pred CCCccCHHHHHHHHHHHcCCcEEEEE--e-CC-CEEEEEEeCcc-cccchHHHHHHHHHHHh
Confidence 45889999999999999999999884 2 23 33344443332 11333466677777665
No 205
>PRK14634 hypothetical protein; Provisional
Probab=87.09 E-value=8.1 Score=33.81 Aligned_cols=90 Identities=19% Similarity=0.102 Sum_probs=61.9
Q ss_pred cchHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHHhhc--cCCceEEEEEeC--
Q 017268 195 PKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRHVDGLPISSEAERERVIQCLEAAIERR--ASEGLELELCTE-- 270 (374)
Q Consensus 195 pGLl~~i~~~l~~~glnI~~A~i~T~~g~~~dvF~V~~~~g~~~~~~~~~~~L~~~L~~~L~~r--~~~~tvieV~~~-- 270 (374)
.-+-..+..++..+|+.+.+..+...++..+-..+|..+.|..++- +.++.+-+.+...|+.. .+..|.+||+++
T Consensus 7 ~~i~~l~~~~~~~~G~elvdve~~~~~~~~~lrV~ID~~~g~~v~l-ddC~~vSr~is~~LD~~d~i~~~Y~LEVSSPGl 85 (155)
T PRK14634 7 PDLETLASATAADKGFELCGIQVLTHLQPMTLQVQIRRSSGSDVSL-DDCAGFSGPMGEALEASQLLTEAYVLEISSPGI 85 (155)
T ss_pred HHHHHHHHHHHHHcCCEEEEEEEEeCCCCcEEEEEEECCCCCcccH-HHHHHHHHHHHHHhcccccCCCCeEEEEeCCCC
Confidence 3455667788999999999999988765444455666666643443 47888888888888643 466899999987
Q ss_pred CCccHHHHHHHHHHhCC
Q 017268 271 DRVGLLSDITRIFRENS 287 (374)
Q Consensus 271 DRpGLL~~It~~L~~~~ 287 (374)
||| |..--..-.-.|
T Consensus 86 dRp--L~~~~~f~r~~G 100 (155)
T PRK14634 86 GDQ--LSSDRDFQTFRG 100 (155)
T ss_pred CCc--CCCHHHHHHhCC
Confidence 665 444444444444
No 206
>PRK09224 threonine dehydratase; Reviewed
Probab=86.54 E-value=32 Score=35.94 Aligned_cols=108 Identities=13% Similarity=0.098 Sum_probs=71.5
Q ss_pred CCEEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHH------H
Q 017268 182 KDYTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRHVDGLPISSEAERERVIQCLEAA------I 255 (374)
Q Consensus 182 ~~~t~v~V~~~DrpGLl~~i~~~l~~~glnI~~A~i~T~~g~~~dvF~V~~~~g~~~~~~~~~~~L~~~L~~~------L 255 (374)
.....+.|.-|||||-|.+++.+|. +.||...+-.-.+..-..+|....-.+. +...++|.+.|++. +
T Consensus 326 ~re~~l~v~iPerPGaL~~f~~~l~--~~nItef~yr~~~~~~a~V~vgie~~~~----~~~~~~i~~~L~~~gy~~~~l 399 (504)
T PRK09224 326 QREALLAVTIPEEPGSFLKFCELLG--GRNVTEFNYRYADAKEAHIFVGVQLSRG----QEERAEIIAQLRAHGYPVVDL 399 (504)
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHhc--cCcEEEEEEEecCCCeEEEEEEEEeCCh----hhHHHHHHHHHHHcCCCeEEC
Confidence 4566789999999999999999999 6888776554333222333332221111 11266777777543 1
Q ss_pred --------------hhccC---CceEEEEEeCCCccHHHHHHHHHHhCCceEEEEEEe
Q 017268 256 --------------ERRAS---EGLELELCTEDRVGLLSDITRIFRENSLSIKRAEIS 296 (374)
Q Consensus 256 --------------~~r~~---~~tvieV~~~DRpGLL~~It~~L~~~~i~I~~a~i~ 296 (374)
.++.+ ..-.+.|.=+.|||-|.++...|. -+-||...+=.
T Consensus 400 s~ne~~k~h~r~~~g~~~~~~~~e~~~~~~fPerpGal~~Fl~~l~-~~~~It~f~Yr 456 (504)
T PRK09224 400 SDDELAKLHVRYMVGGRPPKPLDERLYRFEFPERPGALLKFLSTLG-THWNISLFHYR 456 (504)
T ss_pred CCCHHHHHHHHhccCCCCCCCCceEEEEEeCCCCCCHHHHHHHhcC-CCCeeEEEEEc
Confidence 01121 235889999999999999999777 67788887764
No 207
>cd04929 ACT_TPH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxytryptamine (serotonin) and the first reaction in the synthesis of melatonin. Very little is known about the role of the ACT domain in TPH, which appears to be regulated by phosphorylation but not by its substrate or cofactor. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=86.43 E-value=4.6 Score=30.71 Aligned_cols=46 Identities=13% Similarity=0.129 Sum_probs=35.0
Q ss_pred EEEEeCCCcchHHHHHHHHHhCCceEEEEEEEec-CCeEEEEEEEEe
Q 017268 187 ITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTG-RTEAYQEFYIRH 232 (374)
Q Consensus 187 v~V~~~DrpGLl~~i~~~l~~~glnI~~A~i~T~-~g~~~dvF~V~~ 232 (374)
+.+..+|+||-|+++...|+.+|+|+..-..... +....-.|+|.-
T Consensus 3 l~~~l~~~~g~L~~iL~~f~~~~inl~~IeSRP~~~~~~~y~F~id~ 49 (74)
T cd04929 3 VIFSLKNEVGGLAKALKLFQELGINVVHIESRKSKRRSSEFEIFVDC 49 (74)
T ss_pred EEEEcCCCCcHHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEEEE
Confidence 4455589999999999999999999987777654 333444577765
No 208
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=86.39 E-value=1.8 Score=45.32 Aligned_cols=61 Identities=21% Similarity=0.462 Sum_probs=45.1
Q ss_pred ceEEEEEeCCCccHHHHHHHHHHhCCceEEEEEEeec--CCeeeeEEEEEcCCCCCCChhHHHHHHH
Q 017268 262 GLELELCTEDRVGLLSDITRIFRENSLSIKRAEISTI--GGKVKDTFYVTDVTGNPVDPKIIDSIRR 326 (374)
Q Consensus 262 ~tvieV~~~DRpGLL~~It~~L~~~~i~I~~a~i~T~--g~~~~D~Fyv~d~~g~~l~~~~~~~l~~ 326 (374)
.+.+-+.-.|+||.+..|+..|.+.+|||...++.-. |+.+.-++-+ ..+++++.+++|++
T Consensus 452 ~~~li~~~~D~pG~I~~v~~~L~~~~iNIa~m~~~r~~~g~~al~~i~~----D~~v~~~~l~~i~~ 514 (526)
T PRK13581 452 GHMLIIRNRDRPGVIGKVGTLLGEAGINIAGMQLGRREAGGEALMVLSV----DDPVPEEVLEELRA 514 (526)
T ss_pred ceEEEEEeCCcCChhHHHHHHHhhcCCCchhcEeccCCCCCeEEEEEEC----CCCCCHHHHHHHhc
Confidence 4566667799999999999999999999999988653 3455544544 34555566666664
No 209
>PRK11899 prephenate dehydratase; Provisional
Probab=86.32 E-value=3.6 Score=39.55 Aligned_cols=49 Identities=12% Similarity=0.106 Sum_probs=39.1
Q ss_pred EEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEec-CCeEEEEEEEEe
Q 017268 184 YTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTG-RTEAYQEFYIRH 232 (374)
Q Consensus 184 ~t~v~V~~~DrpGLl~~i~~~l~~~glnI~~A~i~T~-~g~~~dvF~V~~ 232 (374)
.|.+.+..+|+||.|+++..+|+.+|+|+..-...-. ++...=.|+|.-
T Consensus 194 ktsl~~~~~~~pGaL~~vL~~Fa~~gINLtkIeSRP~~~~~~~Y~F~id~ 243 (279)
T PRK11899 194 VTTFVFRVRNIPAALYKALGGFATNGVNMTKLESYMVGGSFTATQFYADI 243 (279)
T ss_pred eEEEEEEeCCCCChHHHHHHHHHHcCCCeeeEEeeecCCCCceEEEEEEE
Confidence 5667777799999999999999999999998777654 444455677765
No 210
>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form. A form of threonine dehydratase with two copies of the C-terminal domain Pfam:PF00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes.
Probab=86.10 E-value=4.7 Score=40.26 Aligned_cols=64 Identities=17% Similarity=0.207 Sum_probs=44.8
Q ss_pred ceEEEEEeCCCccHHHHHHHHHHhCCceEEEEEEee-----cCCeeeeEEEEEcCCCCCCChhHHHHHHHHHhh
Q 017268 262 GLELELCTEDRVGLLSDITRIFRENSLSIKRAEIST-----IGGKVKDTFYVTDVTGNPVDPKIIDSIRRQIGH 330 (374)
Q Consensus 262 ~tvieV~~~DRpGLL~~It~~L~~~~i~I~~a~i~T-----~g~~~~D~Fyv~d~~g~~l~~~~~~~l~~~l~~ 330 (374)
...+.|.-+||||.|.++++.+++.|.||....-.- ..+.+.=.+.+... + +++.++|.+.|.+
T Consensus 305 ~~~l~v~l~D~pG~L~~v~~~i~~~~~NI~~i~~~r~~~~~~~~~~~v~v~vet~-~----~~~~~~i~~~L~~ 373 (380)
T TIGR01127 305 KVRIETVLPDRPGALYHLLESIAEARANIVKIDHDRLSKEIPPGFAMVEITLETR-G----KEHLDEILKILRD 373 (380)
T ss_pred EEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCceEEEEEEEEeC-C----HHHHHHHHHHHHH
Confidence 458999999999999999999999999998875431 12344444544332 1 3556677776654
No 211
>PRK14645 hypothetical protein; Provisional
Probab=85.95 E-value=10 Score=33.13 Aligned_cols=91 Identities=22% Similarity=0.220 Sum_probs=63.0
Q ss_pred CcchHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHHhhc--cCCceEEEEEeC-
Q 017268 194 RPKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRHVDGLPISSEAERERVIQCLEAAIERR--ASEGLELELCTE- 270 (374)
Q Consensus 194 rpGLl~~i~~~l~~~glnI~~A~i~T~~g~~~dvF~V~~~~g~~~~~~~~~~~L~~~L~~~L~~r--~~~~tvieV~~~- 270 (374)
..-+-..+..++..+|+.+.+..+...++..+-..+|..++|..+.- +.++.+-+.+...|+.. .+..|.+||+++
T Consensus 8 ~~~i~~li~~~~~~~G~elvdve~~~~~~~~ilrV~ID~~~~~~v~l-ddC~~vSr~is~~LD~~d~i~~~Y~LEVSSPG 86 (154)
T PRK14645 8 NPDLQQLAEGALEPLGYEVLEVQVQRSGGKRIVLVRIDRKDEQPVTV-EDLERASRALEAELDRLDPIEGEYRLEVESPG 86 (154)
T ss_pred HHHHHHHHHHHHHHcCCEEEEEEEEeCCCCeEEEEEEECCCCCCcCH-HHHHHHHHHHHHHhcccccCCCceEEEEeCCC
Confidence 34466777889999999999999988765444345565444444443 47888888888888643 456899999987
Q ss_pred -CCccHHHHHHHHHHhCC
Q 017268 271 -DRVGLLSDITRIFRENS 287 (374)
Q Consensus 271 -DRpGLL~~It~~L~~~~ 287 (374)
||| |...-....-.|
T Consensus 87 ldRp--L~~~~df~r~~G 102 (154)
T PRK14645 87 PKRP--LFTARHFERFAG 102 (154)
T ss_pred CCCC--CCCHHHHHHhCC
Confidence 555 555555555555
No 212
>PLN02550 threonine dehydratase
Probab=85.52 E-value=29 Score=36.98 Aligned_cols=134 Identities=15% Similarity=0.168 Sum_probs=80.7
Q ss_pred CEEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEec-CCeEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHH------H
Q 017268 183 DYTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTG-RTEAYQEFYIRHVDGLPISSEAERERVIQCLEAA------I 255 (374)
Q Consensus 183 ~~t~v~V~~~DrpGLl~~i~~~l~~~glnI~~A~i~T~-~g~~~dvF~V~~~~g~~~~~~~~~~~L~~~L~~~------L 255 (374)
....+.|.-+||||-|.+++.++... ||.+..-.-. .+.+.-.+-|... .++..++|.+.|.+. |
T Consensus 416 r~~~~~v~ipd~pG~l~~~~~~l~~~--ni~~~~~~~~~~~~~~v~v~ie~~------~~~~~~~i~~~l~~~g~~~~~l 487 (591)
T PLN02550 416 QEAVLATFMPEEPGSFKRFCELVGPM--NITEFKYRYSSEKEALVLYSVGVH------TEQELQALKKRMESAQLRTVNL 487 (591)
T ss_pred CEEEEEEEcCCCCCHHHHHHHHhhhh--cceEEEEEecCCCceEEEEEEEeC------CHHHHHHHHHHHHHCCCCeEeC
Confidence 44668899999999999999999986 7776554432 2332222223222 235677777777653 1
Q ss_pred h--------------hc--cCCceEEEEEeCCCccHHHHHHHHHHhCCceEEEEEEeecCCeeeeEEEEEcCCCCCCChh
Q 017268 256 E--------------RR--ASEGLELELCTEDRVGLLSDITRIFRENSLSIKRAEISTIGGKVKDTFYVTDVTGNPVDPK 319 (374)
Q Consensus 256 ~--------------~r--~~~~tvieV~~~DRpGLL~~It~~L~~~~i~I~~a~i~T~g~~~~D~Fyv~d~~g~~l~~~ 319 (374)
. +| ..+.-++.|.-+.|||-|.+++++|... -||...+=...|+....+|. |-.+.++
T Consensus 488 ~~~~~~~~~LR~v~g~ra~~~~E~l~~v~fPErpGAl~~Fl~~lg~~-~nITeF~YR~~~~~~a~vlv-----Gi~v~~~ 561 (591)
T PLN02550 488 TSNDLVKDHLRYLMGGRAIVKDELLYRFVFPERPGALMKFLDAFSPR-WNISLFHYRGQGETGANVLV-----GIQVPPE 561 (591)
T ss_pred CCChHHhhhhhheeccccccCceEEEEEEecCcCCHHHHHHHhhCCC-CceeeEEeecCCCCCccEEE-----EEeeCHH
Confidence 0 01 1123578999999999999999988862 34444443334544444552 2222234
Q ss_pred HHHHHHHHHhh
Q 017268 320 IIDSIRRQIGH 330 (374)
Q Consensus 320 ~~~~l~~~l~~ 330 (374)
..+.+.+.|..
T Consensus 562 e~~~l~~~l~~ 572 (591)
T PLN02550 562 EMQEFKSRANA 572 (591)
T ss_pred HHHHHHHHHHH
Confidence 55666665543
No 213
>PRK06545 prephenate dehydrogenase; Validated
Probab=84.92 E-value=1.7 Score=43.17 Aligned_cols=41 Identities=10% Similarity=0.146 Sum_probs=36.3
Q ss_pred CCEEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCC
Q 017268 182 KDYTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGRT 222 (374)
Q Consensus 182 ~~~t~v~V~~~DrpGLl~~i~~~l~~~glnI~~A~i~T~~g 222 (374)
..++.|.|..+|+||-+++++..|...|+||.+.+|.-..+
T Consensus 288 ~~~~~~~v~v~d~pg~~~~~~~~~~~~~i~i~~~~i~~~~~ 328 (359)
T PRK06545 288 PSFYDLYVDVPDEPGVIARVTAILGEEGISIENLRILEARE 328 (359)
T ss_pred CcceEEEEeCCCCCCHHHHHHHHHHHcCCCeecceeeeccC
Confidence 35788999999999999999999999999999999965433
No 214
>COG0440 IlvH Acetolactate synthase, small (regulatory) subunit [Amino acid transport and metabolism]
Probab=84.69 E-value=3.3 Score=36.48 Aligned_cols=66 Identities=15% Similarity=0.192 Sum_probs=46.3
Q ss_pred EEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEe-cCCeEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHHh
Q 017268 185 TVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNT-GRTEAYQEFYIRHVDGLPISSEAERERVIQCLEAAIE 256 (374)
Q Consensus 185 t~v~V~~~DrpGLl~~i~~~l~~~glnI~~A~i~T-~~g~~~dvF~V~~~~g~~~~~~~~~~~L~~~L~~~L~ 256 (374)
-.+.+...|.||.|.++++.|+..|+||.+-.+.- ......-+-.|...+ +...+++...|....+
T Consensus 5 rilsvlv~ne~GvLsRv~glfsrRG~NIeSltv~~tE~~~~SRiTivv~g~------~~~~EQi~kQL~kLid 71 (163)
T COG0440 5 RILSLLVENEPGVLSRVTGLFSRRGYNIESLTVGPTETPGLSRITIVVSGD------EQVLEQIIKQLNKLID 71 (163)
T ss_pred EEEEEEEECCCCeeehhhHHHHhcCcccceEEEEecCCCCceEEEEEEcCC------cchHHHHHHHHHhhcc
Confidence 35788899999999999999999999999998864 333332222233221 2366777777776653
No 215
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=84.66 E-value=2 Score=45.03 Aligned_cols=61 Identities=16% Similarity=0.415 Sum_probs=45.3
Q ss_pred ceEEEEEeCCCccHHHHHHHHHHhCCceEEEEEEeec--CCeeeeEEEEEcCCCCCCChhHHHHHHH
Q 017268 262 GLELELCTEDRVGLLSDITRIFRENSLSIKRAEISTI--GGKVKDTFYVTDVTGNPVDPKIIDSIRR 326 (374)
Q Consensus 262 ~tvieV~~~DRpGLL~~It~~L~~~~i~I~~a~i~T~--g~~~~D~Fyv~d~~g~~l~~~~~~~l~~ 326 (374)
.+.+-+.-.|+||.+..|+..|.+++|||...++.-. |+.+.-++.+ ..+++++.+++|++
T Consensus 451 ~~~li~~~~D~pG~I~~v~~~L~~~~iNIa~m~~~R~~~g~~al~~i~~----D~~v~~~~l~~i~~ 513 (525)
T TIGR01327 451 GIMLIILHLDKPGVIGKVGTLLGTAGINIASMQLGRKEKGGEALMLLSL----DQPVPDEVLEEIKA 513 (525)
T ss_pred ccEEEEEecCcCCcchHHHhHHhhcCCChHHcEeecCCCCCeEEEEEEc----CCCCCHHHHHHHhc
Confidence 4566667799999999999999999999999887644 4555545544 23555667777764
No 216
>COG2150 Predicted regulator of amino acid metabolism, contains ACT domain [General function prediction only]
Probab=84.64 E-value=3.6 Score=36.12 Aligned_cols=61 Identities=13% Similarity=0.281 Sum_probs=39.8
Q ss_pred eEEEEEe--CCCccHHHHHHHHHHhCCceEEEEEEeecCCeeeeEEEEEcCCCCCCChhHHHHHH
Q 017268 263 LELELCT--EDRVGLLSDITRIFRENSLSIKRAEISTIGGKVKDTFYVTDVTGNPVDPKIIDSIR 325 (374)
Q Consensus 263 tvieV~~--~DRpGLL~~It~~L~~~~i~I~~a~i~T~g~~~~D~Fyv~d~~g~~l~~~~~~~l~ 325 (374)
-+|++.. .+.||+|+.++..++++||+|..+...--.-...-..||-. -.|+..+.+.+|+
T Consensus 94 gViei~~~~~~~pgi~A~V~~~iak~gi~Irqi~~~dpe~~~e~~l~IVt--e~~iP~~li~el~ 156 (167)
T COG2150 94 GVIEIYPEDARYPGILAGVASLIAKRGISIRQIISEDPELQEEPKLTIVT--ERPIPGDLIDELK 156 (167)
T ss_pred eEEEEEeccCCCccHHHHHHHHHHHcCceEEEEecCCcccCCCceEEEEE--eccCCHHHHHHHh
Confidence 3666655 67899999999999999999999875432122223333322 2455555555554
No 217
>PRK14630 hypothetical protein; Provisional
Probab=84.49 E-value=11 Score=32.62 Aligned_cols=90 Identities=11% Similarity=0.046 Sum_probs=60.8
Q ss_pred CCcchHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEeC--
Q 017268 193 DRPKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRHVDGLPISSEAERERVIQCLEAAIERRASEGLELELCTE-- 270 (374)
Q Consensus 193 DrpGLl~~i~~~l~~~glnI~~A~i~T~~g~~~dvF~V~~~~g~~~~~~~~~~~L~~~L~~~L~~r~~~~tvieV~~~-- 270 (374)
|..-+-..+..++..+|+.+.+......++...-..+|..+.| ++- +.++.+-+.+...|+...+..|.+||++|
T Consensus 6 ~~~~i~~li~~~~~~~G~eLvdve~~~~~~~~~lrV~Id~~~g--V~i-dDC~~vSr~i~~~ld~~i~~~Y~LEVSSPGl 82 (143)
T PRK14630 6 DNSEVYNLIKNVTDRLGIEIIEINTFRNRNEGKIQIVLYKKDS--FGV-DTLCDLHKMILLILEAVLKYNFSLEISTPGI 82 (143)
T ss_pred cHHHHHHHHHHHHHHcCCEEEEEEEEecCCCcEEEEEEECCCC--CCH-HHHHHHHHHHHHHhcccCCCCeEEEEeCCCC
Confidence 4445667788899999999999998876654444555665555 332 46788888887777654567899999987
Q ss_pred CCccHHHHHHHHHHhCC
Q 017268 271 DRVGLLSDITRIFRENS 287 (374)
Q Consensus 271 DRpGLL~~It~~L~~~~ 287 (374)
||| |...-..-.-.|
T Consensus 83 dRp--L~~~~df~r~~G 97 (143)
T PRK14630 83 NRK--IKSDREFKIFEG 97 (143)
T ss_pred CCc--CCCHHHHHHhCC
Confidence 555 444444444333
No 218
>PRK08198 threonine dehydratase; Provisional
Probab=84.13 E-value=8.3 Score=38.85 Aligned_cols=40 Identities=20% Similarity=0.380 Sum_probs=35.0
Q ss_pred CCCCeEEEEEEeCCccchHHHHHHHHHhcCCeEEEEEEEe
Q 017268 45 PTEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWT 84 (374)
Q Consensus 45 ~~~~~~~I~I~~~DrpGL~a~I~~vL~~~glnI~~A~I~T 84 (374)
..+....+.|.-+|+||-|+++..+++.+|.||.+-...-
T Consensus 323 ~~gr~~~l~v~l~D~PG~L~~ll~~i~~~g~NI~~i~~~~ 362 (404)
T PRK08198 323 AAGRYLKLRVRLPDRPGQLAKLLSIIAELGANVIDVDHDR 362 (404)
T ss_pred hcCCEEEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEEE
Confidence 3556678999999999999999999999999999887653
No 219
>cd04890 ACT_AK-like_1 ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes the first of two ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids, lysine, threonine, methionine, and isoleucine. This CD, includes the first ACT domain of the Escherichia coli (EC) isoenzyme, AKIII (LysC) and the Arabidopsis isoenzyme, asparate kinase 1, both enzymes monofunctional and involved in lysine synthesis, as well as the the first ACT domain of Bacillus subtilis (BS) isoenzyme, AKIII (YclM), and of the Saccharomyces cerevisiae AK (Hom3). Also included are the first ACT domains of the Methylomicrobium alcaliphilum AK, the first enzyme of the ectoine biosynthetic pathway. Members of this CD bel
Probab=84.04 E-value=7.9 Score=27.59 Aligned_cols=52 Identities=23% Similarity=0.380 Sum_probs=35.4
Q ss_pred eCCCccHHHHHHHHHHhCCceEEEEEEeecCCeeeeEEEEEcCCCCCCChhHHHHHHHHH
Q 017268 269 TEDRVGLLSDITRIFRENSLSIKRAEISTIGGKVKDTFYVTDVTGNPVDPKIIDSIRRQI 328 (374)
Q Consensus 269 ~~DRpGLL~~It~~L~~~~i~I~~a~i~T~g~~~~D~Fyv~d~~g~~l~~~~~~~l~~~l 328 (374)
..++||+.++|.++|++.|+++.... | ++ ..=.|++..... ++.++.|.++|
T Consensus 10 m~~~~~~~~~if~~l~~~~i~v~~i~--t-~~-~~is~~v~~~~~----~~~~~~l~~~l 61 (62)
T cd04890 10 MNGEVGFLRKIFEILEKHGISVDLIP--T-SE-NSVTLYLDDSLL----PKKLKRLLAEL 61 (62)
T ss_pred cCcccCHHHHHHHHHHHcCCeEEEEe--c-CC-CEEEEEEehhhh----hHHHHHHHHhh
Confidence 34789999999999999999999883 3 23 445677754321 23455555544
No 220
>PRK09436 thrA bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional
Probab=84.03 E-value=73 Score=35.46 Aligned_cols=118 Identities=14% Similarity=0.098 Sum_probs=72.5
Q ss_pred CCCCeEEEEEEeC---CccchHHHHHHHHHhcCCeEEEEEEEeeCCeeEEEEEEecCCCCCCCCCHHHHHHHHHHHHHHH
Q 017268 45 PTEEHTSIEFTGT---DRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVL 121 (374)
Q Consensus 45 ~~~~~~~I~I~~~---DrpGL~a~I~~vL~~~glnI~~A~I~T~~~~~~dvf~V~~~~~g~~~~~~~~~~~l~~~L~~~L 121 (374)
...+...|+|.+. ++||+++++..+|+.+|+||.-....+ ......|.|.. +..++..+.|.+.+
T Consensus 311 ~~~dvalIsV~G~gm~~~~G~~arIf~~La~~gI~V~mIsqss--Se~sIsf~V~~----------~d~~~av~~L~~~f 378 (819)
T PRK09436 311 NLNNMAMFNVSGPGMKGMVGMASRVFAALSRAGISVVLITQSS--SEYSISFCVPQ----------SDAAKAKRALEEEF 378 (819)
T ss_pred EeCCEEEEEEEcCCCCCCcCHHHHHHHHHHHCCCcEEEEEcCC--CCceEEEEEeH----------HHHHHHHHHHHHHH
Confidence 3456677888765 578999999999999999997443322 22334566643 11223333344433
Q ss_pred cCCCcccccccccCCCCCCcchhhhhhhcccCchhhhhhhhccccCCCCCCCEEEEEcCCCCEEEEEEEeC---CCcchH
Q 017268 122 RGYDDFRKAKTSLSPPGIMNRERRLHQIMFDDRDYERVEKAVGRVEDKSSRPQVTVLNIEKDYTVITMRSK---DRPKLL 198 (374)
Q Consensus 122 ~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~t~v~V~~~---DrpGLl 198 (374)
..+.. . .+ . ..|.+ ..+...|.+.+. ++||+.
T Consensus 379 ~~el~-------~---------~~----------~----------------~~i~~---~~~valIsvvG~gm~~~~gv~ 413 (819)
T PRK09436 379 ALELK-------E---------GL----------L----------------EPLEV---EENLAIISVVGDGMRTHPGIA 413 (819)
T ss_pred HHHhc-------c---------CC----------c----------------ceEEE---eCCEEEEEEEccCcccCcCHH
Confidence 21110 0 00 0 11222 235666777775 789999
Q ss_pred HHHHHHHHhCCceEEEEEEEe
Q 017268 199 FDIVCTLTDMQYVVFHGMVNT 219 (374)
Q Consensus 199 ~~i~~~l~~~glnI~~A~i~T 219 (374)
+++..+|.+.|+||......+
T Consensus 414 arif~aL~~~~InI~~Isqgs 434 (819)
T PRK09436 414 AKFFSALGRANINIVAIAQGS 434 (819)
T ss_pred HHHHHHHHHCCCCEEEEEecc
Confidence 999999999999998654433
No 221
>COG0077 PheA Prephenate dehydratase [Amino acid transport and metabolism]
Probab=83.82 E-value=4.9 Score=38.61 Aligned_cols=50 Identities=10% Similarity=0.082 Sum_probs=40.2
Q ss_pred CEEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEec-CCeEEEEEEEEe
Q 017268 183 DYTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTG-RTEAYQEFYIRH 232 (374)
Q Consensus 183 ~~t~v~V~~~DrpGLl~~i~~~l~~~glnI~~A~i~T~-~g~~~dvF~V~~ 232 (374)
..|.+-+..+|+||-|+++.+.|+.+|+|...-...-. ++-..-.|+|.-
T Consensus 193 ~kTsl~f~~~n~PGaL~~~L~~Fa~~gINlTkIESRP~k~~~~~Y~F~iD~ 243 (279)
T COG0077 193 EKTSLIFSVPNKPGALYKALGVFAKRGINLTKIESRPLKTGLGEYLFFIDI 243 (279)
T ss_pred ceEEEEEEcCCCCchHHHHHHHHHHcCcceeeEeecccCCCCeeEEEEEEE
Confidence 37788888899999999999999999999987776644 445555677765
No 222
>PRK08198 threonine dehydratase; Provisional
Probab=83.78 E-value=9.6 Score=38.40 Aligned_cols=37 Identities=19% Similarity=0.293 Sum_probs=32.9
Q ss_pred CCEEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEE
Q 017268 182 KDYTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVN 218 (374)
Q Consensus 182 ~~~t~v~V~~~DrpGLl~~i~~~l~~~glnI~~A~i~ 218 (374)
.....+.|.-+|+||-|.+++.+++++|.||.+....
T Consensus 325 gr~~~l~v~l~D~PG~L~~ll~~i~~~g~NI~~i~~~ 361 (404)
T PRK08198 325 GRYLKLRVRLPDRPGQLAKLLSIIAELGANVIDVDHD 361 (404)
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEE
Confidence 3456799999999999999999999999999987765
No 223
>COG0440 IlvH Acetolactate synthase, small (regulatory) subunit [Amino acid transport and metabolism]
Probab=83.70 E-value=4.4 Score=35.72 Aligned_cols=66 Identities=15% Similarity=0.252 Sum_probs=46.5
Q ss_pred eEEEEEEeCCccchHHHHHHHHHhcCCeEEEEEEEeeCCeeEE-EEEEecCCCCCCCCCHHHHHHHHHHHHHHH
Q 017268 49 HTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAA-VVHVTDHSTGYAIKDPKRLSTIKELLFNVL 121 (374)
Q Consensus 49 ~~~I~I~~~DrpGL~a~I~~vL~~~glnI~~A~I~T~~~~~~d-vf~V~~~~~g~~~~~~~~~~~l~~~L~~~L 121 (374)
...+.+.-.|.||-|+++++.|+..|+||.+-.+.-++..-.. +-.|+. |. +...+.+.+.|.+.+
T Consensus 4 ~rilsvlv~ne~GvLsRv~glfsrRG~NIeSltv~~tE~~~~SRiTivv~---g~----~~~~EQi~kQL~kLi 70 (163)
T COG0440 4 RRILSLLVENEPGVLSRVTGLFSRRGYNIESLTVGPTETPGLSRITIVVS---GD----EQVLEQIIKQLNKLI 70 (163)
T ss_pred eEEEEEEEECCCCeeehhhHHHHhcCcccceEEEEecCCCCceEEEEEEc---CC----cchHHHHHHHHHhhc
Confidence 4568888999999999999999999999999888776543333 333333 21 234566666666643
No 224
>COG0527 LysC Aspartokinases [Amino acid transport and metabolism]
Probab=83.18 E-value=17 Score=37.34 Aligned_cols=118 Identities=10% Similarity=0.101 Sum_probs=71.8
Q ss_pred CCEEEEEEEeC---CCcchHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHHh-h
Q 017268 182 KDYTVITMRSK---DRPKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRHVDGLPISSEAERERVIQCLEAAIE-R 257 (374)
Q Consensus 182 ~~~t~v~V~~~---DrpGLl~~i~~~l~~~glnI~~A~i~T~~g~~~dvF~V~~~~g~~~~~~~~~~~L~~~L~~~L~-~ 257 (374)
.+.+.|+|... ..+|.++++..+|+++|+|+..-........ -.|.+...+. +.....|.+.....+. -
T Consensus 305 ~~~~~i~v~~~~~~~~~g~~a~vf~~l~~~~i~v~~I~q~~~~~~--i~~~v~~~~~-----~~a~~~l~~~~~~~~~~v 377 (447)
T COG0527 305 DNVALITVSGPGMNGMVGFAARVFGILAEAGINVDLITQSISEVS--ISFTVPESDA-----PRALRALLEEKLELLAEV 377 (447)
T ss_pred CCeEEEEEEccCccccccHHHHHHHHHHHcCCcEEEEEeccCCCe--EEEEEchhhH-----HHHHHHHHHHHhhhcceE
Confidence 45677777653 3459999999999999999975433322222 4466654321 1122333333322221 0
Q ss_pred ccC-CceEEEEEeC---CCccHHHHHHHHHHhCCceEEEEEEeecCCeeeeEEEEEc
Q 017268 258 RAS-EGLELELCTE---DRVGLLSDITRIFRENSLSIKRAEISTIGGKVKDTFYVTD 310 (374)
Q Consensus 258 r~~-~~tvieV~~~---DRpGLL~~It~~L~~~~i~I~~a~i~T~g~~~~D~Fyv~d 310 (374)
... .-.+|.+.+. ..||+.+++.++|++.||||.... -....-.|.|..
T Consensus 378 ~~~~~~a~vsiVG~gm~~~~gvaa~~f~aL~~~~ini~~is----sSe~~Is~vV~~ 430 (447)
T COG0527 378 EVEEGLALVSIVGAGMRSNPGVAARIFQALAEENINIIMIS----SSEISISFVVDE 430 (447)
T ss_pred EeeCCeeEEEEEccccccCcCHHHHHHHHHHhCCCcEEEEE----cCCceEEEEEcc
Confidence 011 1245666554 779999999999999999999877 233455666633
No 225
>cd04937 ACT_AKi-DapG-BS_2 ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI. This CD includes the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) strain 168), Clostridia, and Actinobacteria bacterial species. In B. subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive AK isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The BS AKI is tetrameric consisting of two alpha and two beta subunits; th
Probab=83.14 E-value=14 Score=26.72 Aligned_cols=42 Identities=12% Similarity=0.322 Sum_probs=30.6
Q ss_pred EEEEEeC---CccchHHHHHHHHHhcCCeEEEEEEEeeCCeeEEEEEEe
Q 017268 51 SIEFTGT---DRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVT 96 (374)
Q Consensus 51 ~I~I~~~---DrpGL~a~I~~vL~~~glnI~~A~I~T~~~~~~dvf~V~ 96 (374)
.|.+++. +.||+++++..+|...|++|. .+.| ......|.|.
T Consensus 3 ~isvvG~~~~~~~gi~~~if~aL~~~~I~v~--~~~~--Se~~is~~v~ 47 (64)
T cd04937 3 KVTIIGSRIRGVPGVMAKIVGALSKEGIEIL--QTAD--SHTTISCLVS 47 (64)
T ss_pred EEEEECCCccCCcCHHHHHHHHHHHCCCCEE--EEEc--CccEEEEEEc
Confidence 5777775 789999999999999999996 3333 2333445553
No 226
>PRK09084 aspartate kinase III; Validated
Probab=82.40 E-value=17 Score=37.34 Aligned_cols=99 Identities=11% Similarity=0.122 Sum_probs=61.9
Q ss_pred CCEEEEEEEeC---CCcchHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHHhh-
Q 017268 182 KDYTVITMRSK---DRPKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRHVDGLPISSEAERERVIQCLEAAIER- 257 (374)
Q Consensus 182 ~~~t~v~V~~~---DrpGLl~~i~~~l~~~glnI~~A~i~T~~g~~~dvF~V~~~~g~~~~~~~~~~~L~~~L~~~L~~- 257 (374)
.+...|+|.+. +.+|.++++..+|+++|+||.--.. . + .--.|.|...+-.. .....+.+.+...|..
T Consensus 304 ~~i~lItv~~~~~~~~~g~~a~if~~l~~~~I~Vd~I~s--s-e-~sIs~~i~~~~~~~----~~~~~~~~~l~~el~~~ 375 (448)
T PRK09084 304 RNQTLLTLHSLNMLHARGFLAEVFGILARHKISVDLITT--S-E-VSVSLTLDTTGSTS----TGDTLLTQALLTELSQL 375 (448)
T ss_pred CCEEEEEEecCCCCccccHHHHHHHHHHHcCCeEEEEec--c-C-cEEEEEEechhhhh----hhhHHHHHHHHHHHhcC
Confidence 35667888654 6899999999999999999986642 2 2 22346665532110 0111222222222321
Q ss_pred -c--c-CCceEEEEEeC---CCccHHHHHHHHHHhCCc
Q 017268 258 -R--A-SEGLELELCTE---DRVGLLSDITRIFRENSL 288 (374)
Q Consensus 258 -r--~-~~~tvieV~~~---DRpGLL~~It~~L~~~~i 288 (374)
+ . +.-.+|.|.+. ++||++.++..+|++.++
T Consensus 376 ~~i~~~~~va~IsvvG~gm~~~~gv~arif~aL~~~nI 413 (448)
T PRK09084 376 CRVEVEEGLALVALIGNNLSKACGVAKRVFGVLEPFNI 413 (448)
T ss_pred CeEEEECCeEEEEEECCCcccCcChHHHHHHHHHhCCe
Confidence 1 1 23467888886 799999999999987433
No 227
>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form. A form of threonine dehydratase with two copies of the C-terminal domain Pfam:PF00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes.
Probab=82.21 E-value=12 Score=37.38 Aligned_cols=36 Identities=14% Similarity=0.192 Sum_probs=31.5
Q ss_pred CEEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEE
Q 017268 183 DYTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVN 218 (374)
Q Consensus 183 ~~t~v~V~~~DrpGLl~~i~~~l~~~glnI~~A~i~ 218 (374)
....+.|..+|+||.|++++..++++|.||.+-.-.
T Consensus 304 r~~~l~v~l~D~pG~L~~v~~~i~~~~~NI~~i~~~ 339 (380)
T TIGR01127 304 RKVRIETVLPDRPGALYHLLESIAEARANIVKIDHD 339 (380)
T ss_pred CEEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEee
Confidence 445789999999999999999999999999877543
No 228
>PRK06349 homoserine dehydrogenase; Provisional
Probab=82.08 E-value=6.6 Score=40.04 Aligned_cols=54 Identities=19% Similarity=0.271 Sum_probs=42.2
Q ss_pred cCCCCeEEEEEEeCCccchHHHHHHHHHhcCCeEEEEEEEeeCCeeEEEEEEec
Q 017268 44 MPTEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTD 97 (374)
Q Consensus 44 ~~~~~~~~I~I~~~DrpGL~a~I~~vL~~~glnI~~A~I~T~~~~~~dvf~V~~ 97 (374)
+.....+-|.+...|+||.|++|+++|..+|+||.+-......+....++.+++
T Consensus 343 ~~~~~~yylRl~v~d~pGvLa~I~~~f~~~~vsI~si~q~~~~~~~~~ivivT~ 396 (426)
T PRK06349 343 EEIESKYYLRLLVADKPGVLAKIAAIFAENGISIESILQKGAGGEGAEIVIVTH 396 (426)
T ss_pred HHhceeEEEEEEecCCcchHHHHHHHHhhcCccEEEEEeccCCCCceeEEEEEE
Confidence 444556789999999999999999999999999997766554444455666765
No 229
>TIGR01270 Trp_5_monoox tryptophan 5-monooxygenase, tetrameric. This model describes tryptophan 5-monooxygenase, a member of the family of tetrameric, biopterin-dependent aromatic amino acid hydroxylases found in metazoans. It is closely related to tetrameric phenylalanine-4-hydroxylase and tyrosine 3-monooxygenase, and more distantly related to the monomeric phenylalanine-4-hydroxylase found in some Gram-negative bacteria.
Probab=82.02 E-value=2.6 Score=43.14 Aligned_cols=53 Identities=19% Similarity=0.164 Sum_probs=41.8
Q ss_pred ceEEEEEeCCCccHHHHHHHHHHhCCceEEEEEEeecCCeeee--EEEEEcCCCCC
Q 017268 262 GLELELCTEDRVGLLSDITRIFRENSLSIKRAEISTIGGKVKD--TFYVTDVTGNP 315 (374)
Q Consensus 262 ~tvieV~~~DRpGLL~~It~~L~~~~i~I~~a~i~T~g~~~~D--~Fyv~d~~g~~ 315 (374)
.+.|-+...|+||-|+++-+.|+.+|||+.+....-......+ .|||.- +|..
T Consensus 31 ktSLIFsL~d~pGaL~~vL~vFa~~gINLThIESRPsk~~~~e~Y~FfVD~-Eg~~ 85 (464)
T TIGR01270 31 RLSIIFSLSNVVGDLSKAIAIFQDRHINILHLESRDSKDGTSKTMDVLVDV-ELFH 85 (464)
T ss_pred eEEEEEECCCCchHHHHHHHHHHHCCCCEEEEECCcCCCCCCccEEEEEEE-EcCH
Confidence 3566677799999999999999999999999988776555444 788844 4554
No 230
>cd04930 ACT_TH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines (dopamine, noradrenaline and adrenaline), functioning as hormones and neurotransmitters. The enzyme is not regulated by its amino acid substrate, but instead by phosphorylation at several serine residues located N-terminal of the ACT domain, and by feedback inhibition by catecholamines at the active site. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=81.91 E-value=3.9 Score=33.97 Aligned_cols=49 Identities=14% Similarity=0.112 Sum_probs=36.4
Q ss_pred EEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecC-CeEEEEEEEEe
Q 017268 184 YTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGR-TEAYQEFYIRH 232 (374)
Q Consensus 184 ~t~v~V~~~DrpGLl~~i~~~l~~~glnI~~A~i~T~~-g~~~dvF~V~~ 232 (374)
.+.+.+..+|+||-|+++...|+.+|+|+..-...... ....-.|+|.-
T Consensus 41 ktSlifsl~~~pGsL~~iL~~Fa~~gINLt~IESRP~~~~~~eY~FfIdi 90 (115)
T cd04930 41 KATLLFSLKEGFSSLSRILKVFETFEAKIHHLESRPSRKEGGDLEVLVRC 90 (115)
T ss_pred cEEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEECCcCCCCCceEEEEEEE
Confidence 45666677999999999999999999999877766542 22233466654
No 231
>PRK11898 prephenate dehydratase; Provisional
Probab=81.35 E-value=6.1 Score=38.05 Aligned_cols=52 Identities=21% Similarity=0.227 Sum_probs=39.4
Q ss_pred eEEEEEeC-CCccHHHHHHHHHHhCCceEEEEEEeecCCe-eeeEEEEEcCCCCC
Q 017268 263 LELELCTE-DRVGLLSDITRIFRENSLSIKRAEISTIGGK-VKDTFYVTDVTGNP 315 (374)
Q Consensus 263 tvieV~~~-DRpGLL~~It~~L~~~~i~I~~a~i~T~g~~-~~D~Fyv~d~~g~~ 315 (374)
+.|-+... |+||.|+++...|+++|||+.+....-..++ -.=.||| |.+|..
T Consensus 197 tslif~l~~~~pGsL~~~L~~F~~~~INLt~IeSRP~~~~~~~y~F~v-d~eg~~ 250 (283)
T PRK11898 197 TSLVLTLPNNLPGALYKALSEFAWRGINLTRIESRPTKTGLGTYFFFI-DVEGHI 250 (283)
T ss_pred EEEEEEeCCCCccHHHHHHHHHHHCCCCeeeEecccCCCCCccEEEEE-EEEccC
Confidence 45555554 4699999999999999999999988765444 4457888 555765
No 232
>PRK08818 prephenate dehydrogenase; Provisional
Probab=80.65 E-value=4.3 Score=40.69 Aligned_cols=50 Identities=12% Similarity=0.087 Sum_probs=37.2
Q ss_pred CEEEEEEEeC-CCcchHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEEeC
Q 017268 183 DYTVITMRSK-DRPKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRHV 233 (374)
Q Consensus 183 ~~t~v~V~~~-DrpGLl~~i~~~l~~~glnI~~A~i~T~~g~~~dvF~V~~~ 233 (374)
..+.+.+..+ |+||.|++++.+|+.+|+||.+-.+.-...+-.- |+|.-.
T Consensus 294 ~~~~l~~~v~~d~pG~L~~vl~~la~~~INit~Ies~~~r~~~y~-f~i~~~ 344 (370)
T PRK08818 294 EPLTLSVYLPEDRPGSLRTLLHVFEQHGVNLSSIHSSRTPAGELH-FRIGFE 344 (370)
T ss_pred cceEEEEECCCCCCChHHHHHHHHHHcCcccceEEEecccCceEE-EEEEEe
Confidence 3566777776 9999999999999999999999888332222222 776543
No 233
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=79.95 E-value=4 Score=42.79 Aligned_cols=50 Identities=14% Similarity=0.198 Sum_probs=40.0
Q ss_pred CEEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEe--cCCeEEEEEEEEe
Q 017268 183 DYTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNT--GRTEAYQEFYIRH 232 (374)
Q Consensus 183 ~~t~v~V~~~DrpGLl~~i~~~l~~~glnI~~A~i~T--~~g~~~dvF~V~~ 232 (374)
....+.+...|+||.+..++.+|.++++||...++.. .++.++-++.+..
T Consensus 451 ~~~~li~~~~D~pG~I~~v~~~L~~~~iNIa~m~~~r~~~g~~al~~i~~D~ 502 (526)
T PRK13581 451 EGHMLIIRNRDRPGVIGKVGTLLGEAGINIAGMQLGRREAGGEALMVLSVDD 502 (526)
T ss_pred CceEEEEEeCCcCChhHHHHHHHhhcCCCchhcEeccCCCCCeEEEEEECCC
Confidence 3344566779999999999999999999999999876 4577776666644
No 234
>cd04922 ACT_AKi-HSDH-ThrA_2 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). This CD includes the second of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathwa
Probab=79.92 E-value=18 Score=25.70 Aligned_cols=45 Identities=9% Similarity=0.135 Sum_probs=32.5
Q ss_pred EEEEEe---CCCccHHHHHHHHHHhCCceEEEEEEeecCCeeeeEEEEEc
Q 017268 264 ELELCT---EDRVGLLSDITRIFRENSLSIKRAEISTIGGKVKDTFYVTD 310 (374)
Q Consensus 264 vieV~~---~DRpGLL~~It~~L~~~~i~I~~a~i~T~g~~~~D~Fyv~d 310 (374)
.|.|.+ .+.||++++|.++|++.|+++....-.+. ...=.|.|..
T Consensus 3 ~isvvg~~~~~~~~~~~~i~~~l~~~~I~v~~i~~~~s--~~~is~~v~~ 50 (66)
T cd04922 3 ILALVGDGMAGTPGVAATFFSALAKANVNIRAIAQGSS--ERNISAVIDE 50 (66)
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEecCc--ccEEEEEEeH
Confidence 466666 48899999999999999999988754332 2333455533
No 235
>PRK14631 hypothetical protein; Provisional
Probab=79.89 E-value=26 Score=31.33 Aligned_cols=94 Identities=14% Similarity=0.083 Sum_probs=62.5
Q ss_pred chHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEEeC----------------CCCCCCCHHHHHHHHHHHHHHHhhc-
Q 017268 196 KLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRHV----------------DGLPISSEAERERVIQCLEAAIERR- 258 (374)
Q Consensus 196 GLl~~i~~~l~~~glnI~~A~i~T~~g~~~dvF~V~~~----------------~g~~~~~~~~~~~L~~~L~~~L~~r- 258 (374)
-+...+.-++..+|+.+.+......++..+-..+|..+ .+..++- +.++.+-+.|...|+..
T Consensus 9 ~i~~li~p~~~~~G~eLvdve~~~~~~~~~LrV~ID~~~~~~~~~~~~~~~~~~~~~gvti-ddC~~vSr~is~~LD~~d 87 (174)
T PRK14631 9 ALTDIIAPAVAACGVDLWGIEFLPQGKRSLLRIYIDRLVEENAEPVINEDGEVEQGRGIGV-EDCVRVTQQVGAMLDVHD 87 (174)
T ss_pred HHHHHHHHHHHHcCCEEEEEEEEeCCCceEEEEEEecCcccccccccccccccccCCCcCH-HHHHHHHHHHHHHhcccc
Confidence 35556778899999999999999876544444455533 1222333 47888888888888632
Q ss_pred -cCCceEEEEEeCCCccHHHHHHHHHHhCCceE
Q 017268 259 -ASEGLELELCTEDRVGLLSDITRIFRENSLSI 290 (374)
Q Consensus 259 -~~~~tvieV~~~DRpGLL~~It~~L~~~~i~I 290 (374)
.+..|.+||+++-=---|.....+-.-.|=.|
T Consensus 88 ~i~~~Y~LEVSSPGldRpL~~~~df~r~~G~~V 120 (174)
T PRK14631 88 PISGEYALEVSSPGWDRPFFQLEQLQGYIGQQV 120 (174)
T ss_pred cCCCCeEEEEeCCCCCCcCCCHHHHHHhCCCeE
Confidence 46789999998833333666666666655443
No 236
>PRK14640 hypothetical protein; Provisional
Probab=78.87 E-value=27 Score=30.44 Aligned_cols=89 Identities=15% Similarity=0.155 Sum_probs=61.4
Q ss_pred hHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHHhhc--cCCceEEEEEeC--CC
Q 017268 197 LLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRHVDGLPISSEAERERVIQCLEAAIERR--ASEGLELELCTE--DR 272 (374)
Q Consensus 197 Ll~~i~~~l~~~glnI~~A~i~T~~g~~~dvF~V~~~~g~~~~~~~~~~~L~~~L~~~L~~r--~~~~tvieV~~~--DR 272 (374)
+...+..++..+|+.+.+......++.-.-..+|..+.| ++- +.++.+-++|...|+.. .+..|.+||+++ ||
T Consensus 8 i~~li~p~~~~~G~el~dve~~~~~~~~~lrV~ID~~~g--v~l-ddC~~vSr~is~~LD~~d~i~~~Y~LEVSSPGl~R 84 (152)
T PRK14640 8 LTDLLEAPVVALGFELWGIEFIRAGKHSTLRVYIDGENG--VSV-ENCAEVSHQVGAIMDVEDPITEEYYLEVSSPGLDR 84 (152)
T ss_pred HHHHHHHHHHhcCCEEEEEEEEecCCCcEEEEEEECCCC--CCH-HHHHHHHHHHHHHhcccccCCCCeEEEEeCCCCCC
Confidence 445677889999999999999886654333555655545 333 47888888888888643 456899999987 55
Q ss_pred ccHHHHHHHHHHhCCceE
Q 017268 273 VGLLSDITRIFRENSLSI 290 (374)
Q Consensus 273 pGLL~~It~~L~~~~i~I 290 (374)
| |...-..-.-.|=.|
T Consensus 85 p--L~~~~~f~r~~G~~v 100 (152)
T PRK14640 85 P--LFKVAQFEKYVGQEA 100 (152)
T ss_pred c--CCCHHHHHHhCCCeE
Confidence 5 555555555555443
No 237
>COG2150 Predicted regulator of amino acid metabolism, contains ACT domain [General function prediction only]
Probab=78.50 E-value=4.1 Score=35.73 Aligned_cols=36 Identities=8% Similarity=0.059 Sum_probs=28.6
Q ss_pred EEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEe
Q 017268 184 YTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNT 219 (374)
Q Consensus 184 ~t~v~V~~~DrpGLl~~i~~~l~~~glnI~~A~i~T 219 (374)
-..+.....+.||+++.+++.++++|++|+.+-..-
T Consensus 95 Viei~~~~~~~pgi~A~V~~~iak~gi~Irqi~~~d 130 (167)
T COG2150 95 VIEIYPEDARYPGILAGVASLIAKRGISIRQIISED 130 (167)
T ss_pred EEEEEeccCCCccHHHHHHHHHHHcCceEEEEecCC
Confidence 344444457789999999999999999999876643
No 238
>TIGR01268 Phe4hydrox_tetr phenylalanine-4-hydroxylase, tetrameric form. The member of this family from Drosophila has been described as having both phenylalanine-4-hydroxylase and tryptophan 5-monoxygenase activity (PubMed:1371286). However, a Drosophila member of the tryptophan 5-monoxygenase clade has subsequently been discovered.
Probab=77.87 E-value=8.5 Score=39.31 Aligned_cols=52 Identities=13% Similarity=0.266 Sum_probs=40.9
Q ss_pred eEEEEEeCCCccHHHHHHHHHHhCCceEEEEEEeecCCe-eeeEEEEEcCCCCC
Q 017268 263 LELELCTEDRVGLLSDITRIFRENSLSIKRAEISTIGGK-VKDTFYVTDVTGNP 315 (374)
Q Consensus 263 tvieV~~~DRpGLL~~It~~L~~~~i~I~~a~i~T~g~~-~~D~Fyv~d~~g~~ 315 (374)
+.|-+...|+||-|+++.++|+++|||+.+....-.... -.=.|||.- +|.+
T Consensus 17 TSLiFsL~d~pGaL~~vL~vFa~~gINLthIESRPsk~~~~eY~FFVD~-eg~~ 69 (436)
T TIGR01268 17 TSLIFSLKEEAGALAETLKLFQAHDVNLTHIESRPSKTHPGEYEFFVEF-DEAS 69 (436)
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHCCCCeeEEecccCCCCCccEEEEEEE-ecCc
Confidence 567777799999999999999999999999987765433 345788844 4654
No 239
>cd04912 ACT_AKiii-LysC-EC-like_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC) and plants, (Zea mays Ask1, Ask2, and Arabidopsis thaliana AK1). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Like the A. thaliana AK1 (AK1-AT), the E. coli AKIII (LysC) has two bound feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. The lysine-sensitive plant isoenzyme is synergistically inhibited by S-adenosylmethionine. A homolog of this group appears to be the Saccharomyces cerevisiae AK (Hom3) which clusters with this group as well. Members of this CD
Probab=77.70 E-value=26 Score=26.23 Aligned_cols=63 Identities=13% Similarity=0.169 Sum_probs=39.2
Q ss_pred EEEEEEe---CCccchHHHHHHHHHhcCCeEEEEEEEeeCCeeEEEEEEecCCCCCCCCCHHHHHHHHHHHHH
Q 017268 50 TSIEFTG---TDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFN 119 (374)
Q Consensus 50 ~~I~I~~---~DrpGL~a~I~~vL~~~glnI~~A~I~T~~~~~~dvf~V~~~~~g~~~~~~~~~~~l~~~L~~ 119 (374)
+.|++++ .+.+|+.+++..+|+.+|+++.-- +.++ ....|.|.. .....+......|.+.|++
T Consensus 2 ~~Vsi~g~~l~~~~g~~~~if~~L~~~~I~v~~i---~~s~-~~is~~v~~---~~~~~~~~~~~~~~~~l~~ 67 (75)
T cd04912 2 TLLNIKSNRMLGAHGFLAKVFEIFAKHGLSVDLI---STSE-VSVSLTLDP---TKNLSDQLLLDALVKDLSQ 67 (75)
T ss_pred EEEEEEcCCCCCCccHHHHHHHHHHHcCCeEEEE---EcCC-cEEEEEEEc---hhhccchHHHHHHHHHHHh
Confidence 3566643 577999999999999999999533 2232 334566654 2221122355566666665
No 240
>PRK08961 bifunctional aspartate kinase/diaminopimelate decarboxylase protein; Provisional
Probab=77.17 E-value=32 Score=38.44 Aligned_cols=132 Identities=9% Similarity=0.107 Sum_probs=75.4
Q ss_pred CCEEEEEEEe---CCCcchHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHHhh-
Q 017268 182 KDYTVITMRS---KDRPKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRHVDGLPISSEAERERVIQCLEAAIER- 257 (374)
Q Consensus 182 ~~~t~v~V~~---~DrpGLl~~i~~~l~~~glnI~~A~i~T~~g~~~dvF~V~~~~g~~~~~~~~~~~L~~~L~~~L~~- 257 (374)
.+.+.|++.+ .+.+|+++++...|+++|+||.-. .+.. ..-+|.+...+. ......++.+...|.. +..
T Consensus 320 ~~v~lItv~~~~~~~~~g~~a~if~~la~~~I~Vd~I--~sse--~sis~~i~~~~~--~~~~~~~~~l~~~l~~-~~~i 392 (861)
T PRK08961 320 NGIVLVSMETIGMWQQVGFLADVFTLFKKHGLSVDLI--SSSE--TNVTVSLDPSEN--LVNTDVLAALSADLSQ-ICRV 392 (861)
T ss_pred CCEEEEEEecCCccccccHHHHHHHHHHHcCCeEEEE--EcCC--CEEEEEEccccc--cchHHHHHHHHHHHhh-cCcE
Confidence 3566777753 468999999999999999999654 2222 222344544221 1011234444444332 110
Q ss_pred c-cCCceEEEEEeC---CCccHHHHHHHHHHhCCceEEEEEEeecCCeeee-EEEEEcCCCCCCChhHHHHHHHHHh
Q 017268 258 R-ASEGLELELCTE---DRVGLLSDITRIFRENSLSIKRAEISTIGGKVKD-TFYVTDVTGNPVDPKIIDSIRRQIG 329 (374)
Q Consensus 258 r-~~~~tvieV~~~---DRpGLL~~It~~L~~~~i~I~~a~i~T~g~~~~D-~Fyv~d~~g~~l~~~~~~~l~~~l~ 329 (374)
. ...-.+|.|.+. .+||++.++..+|++.||++ -..|..... .|.|...+. .+.++.|.++|.
T Consensus 393 ~~~~~va~ISvVG~gm~~~~gv~arif~aL~~~~I~~-----i~~gsSe~~Is~vV~~~d~----~~av~~LH~~f~ 460 (861)
T PRK08961 393 KIIVPCAAVSLVGRGMRSLLHKLGPAWATFGAERVHL-----ISQASNDLNLTFVIDESDA----DGLLPRLHAELI 460 (861)
T ss_pred EEeCCeEEEEEeCCCcccCcChHHHHHHHHhhcCeEE-----EECCCccccEEEEEeHHHH----HHHHHHHHHHHh
Confidence 1 123467888876 88999999999999977655 223333333 354533321 134555555553
No 241
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=77.14 E-value=4.3 Score=42.54 Aligned_cols=60 Identities=10% Similarity=0.077 Sum_probs=44.2
Q ss_pred EEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEe--cCCeEEEEEEEEeCCCCCCCCHHHHHHHH
Q 017268 184 YTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNT--GRTEAYQEFYIRHVDGLPISSEAERERVI 248 (374)
Q Consensus 184 ~t~v~V~~~DrpGLl~~i~~~l~~~glnI~~A~i~T--~~g~~~dvF~V~~~~g~~~~~~~~~~~L~ 248 (374)
...+.+.-.|+||.+..++.+|.++++||...++.. .+|.++-++.+..+ ++ ++.+++|+
T Consensus 451 ~~~li~~~~D~pG~I~~v~~~L~~~~iNIa~m~~~R~~~g~~al~~i~~D~~----v~-~~~l~~i~ 512 (525)
T TIGR01327 451 GIMLIILHLDKPGVIGKVGTLLGTAGINIASMQLGRKEKGGEALMLLSLDQP----VP-DEVLEEIK 512 (525)
T ss_pred ccEEEEEecCcCCcchHHHhHHhhcCCChHHcEeecCCCCCeEEEEEEcCCC----CC-HHHHHHHh
Confidence 334556679999999999999999999999998875 45778766666543 23 33555554
No 242
>cd04919 ACT_AK-Hom3_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydrodynamic size. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=77.12 E-value=23 Score=25.26 Aligned_cols=45 Identities=9% Similarity=0.229 Sum_probs=32.4
Q ss_pred EEEEEeC---CCccHHHHHHHHHHhCCceEEEEEEeecCCeeeeEEEEEc
Q 017268 264 ELELCTE---DRVGLLSDITRIFRENSLSIKRAEISTIGGKVKDTFYVTD 310 (374)
Q Consensus 264 vieV~~~---DRpGLL~~It~~L~~~~i~I~~a~i~T~g~~~~D~Fyv~d 310 (374)
+|.+.+. ++||+++++.++|++.|+++....-.+.+ ..=.|.+.+
T Consensus 3 ~isvvg~~~~~~~~~~~~if~~L~~~~I~v~~i~q~~s~--~~isf~v~~ 50 (66)
T cd04919 3 ILSLVGKHMKNMIGIAGRMFTTLADHRINIEMISQGASE--INISCVIDE 50 (66)
T ss_pred EEEEECCCCCCCcCHHHHHHHHHHHCCCCEEEEEecCcc--ceEEEEEeH
Confidence 4566665 78999999999999999999887654422 333455533
No 243
>cd04913 ACT_AKii-LysC-BS-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related proteins. This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive aspartokinase isoenzymes. The B. subtilis 168 AKII is induced by methionine and repressed and inhibited by lysine. Although Corynebacterium glutamicum is known to contain a single aspartokinase, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is fee
Probab=77.10 E-value=7.1 Score=28.31 Aligned_cols=27 Identities=15% Similarity=0.255 Sum_probs=24.1
Q ss_pred eCCCccHHHHHHHHHHhCCceEEEEEE
Q 017268 269 TEDRVGLLSDITRIFRENSLSIKRAEI 295 (374)
Q Consensus 269 ~~DRpGLL~~It~~L~~~~i~I~~a~i 295 (374)
.+|+||.+.++.+.|++.|++|....-
T Consensus 9 ~~~~~g~~~~i~~~L~~~~I~i~~i~~ 35 (75)
T cd04913 9 VPDKPGVAAKIFGALAEANINVDMIVQ 35 (75)
T ss_pred CCCCCcHHHHHHHHHHHcCCeEEEEEe
Confidence 469999999999999999999997654
No 244
>PLN02551 aspartokinase
Probab=77.06 E-value=1e+02 Score=32.43 Aligned_cols=115 Identities=13% Similarity=0.135 Sum_probs=68.9
Q ss_pred CCCeEEEEEEeC---CccchHHHHHHHHHhcCCeEEEEEEEeeCCeeEEEEEEecCCCCCCCCCHHHHHHHHHHHHHHHc
Q 017268 46 TEEHTSIEFTGT---DRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLR 122 (374)
Q Consensus 46 ~~~~~~I~I~~~---DrpGL~a~I~~vL~~~glnI~~A~I~T~~~~~~dvf~V~~~~~g~~~~~~~~~~~l~~~L~~~L~ 122 (374)
..+.+.|+|.+. +.+|.++++..+|+.+|++|.-- .| .+ ....|.|... . . ...+.+++.+.+.+.
T Consensus 363 ~~~v~li~i~~~~m~~~~g~~arvf~~l~~~~I~Vd~I--ss-Se-~sIs~~v~~~---~-~---~~~~~i~~~l~~l~~ 431 (521)
T PLN02551 363 KRNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVV--AT-SE-VSISLTLDPS---K-L---WSRELIQQELDHLVE 431 (521)
T ss_pred CCCeEEEEEecCCCCCcccHHHHHHHHHHHcCCcEEEE--ec-cC-CEEEEEEehh---H-h---hhhhhHHHHHHHHHH
Confidence 334566777655 58999999999999999999854 22 22 3345666431 1 1 112234333333222
Q ss_pred CCCcccccccccCCCCCCcchhhhhhhcccCchhhhhhhhccccCCCCCCCEEEEEcCCCCEEEEEEEe--CCCcchHHH
Q 017268 123 GYDDFRKAKTSLSPPGIMNRERRLHQIMFDDRDYERVEKAVGRVEDKSSRPQVTVLNIEKDYTVITMRS--KDRPKLLFD 200 (374)
Q Consensus 123 ~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~t~v~V~~--~DrpGLl~~ 200 (374)
. .. + + ..|.+ ..+...|.|++ ...+|++++
T Consensus 432 e-l~------------------~----------~----------------~~V~v---~~~vAiISvVG~~~~~~gvaar 463 (521)
T PLN02551 432 E-LE------------------K----------I----------------AVVNL---LQGRSIISLIGNVQRSSLILEK 463 (521)
T ss_pred H-hh------------------c----------C----------------CeEEE---eCCEEEEEEEccCCCCccHHHH
Confidence 1 10 0 0 01222 12455667665 368999999
Q ss_pred HHHHHHhCCceEEEEEEEe
Q 017268 201 IVCTLTDMQYVVFHGMVNT 219 (374)
Q Consensus 201 i~~~l~~~glnI~~A~i~T 219 (374)
+..+|+..|+||......+
T Consensus 464 iF~aLa~~gInV~mIsqga 482 (521)
T PLN02551 464 VFRVLRTNGVNVQMISQGA 482 (521)
T ss_pred HHHHHHHCCCCeEEEEecC
Confidence 9999999999997554433
No 245
>PRK14647 hypothetical protein; Provisional
Probab=76.73 E-value=28 Score=30.57 Aligned_cols=87 Identities=15% Similarity=0.122 Sum_probs=58.4
Q ss_pred hHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHHhhc--cCCceEEEEEeC--CC
Q 017268 197 LLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRHVDGLPISSEAERERVIQCLEAAIERR--ASEGLELELCTE--DR 272 (374)
Q Consensus 197 Ll~~i~~~l~~~glnI~~A~i~T~~g~~~dvF~V~~~~g~~~~~~~~~~~L~~~L~~~L~~r--~~~~tvieV~~~--DR 272 (374)
+-..+..++..+|+.+.+..+...++...-..+|..+.| ++- +.++.+-+.+...|+.. .+..|.+||+++ ||
T Consensus 10 i~~~i~~~~~~~G~~L~dv~~~~~~~~~~lrV~ID~~~g--vsl-ddC~~vSr~is~~LD~~d~i~~~Y~LEVSSPG~~R 86 (159)
T PRK14647 10 VTELAEQVLSSLGLELVELEYKREGREMVLRLFIDKEGG--VNL-DDCAEVSRELSEILDVEDFIPERYTLEVSSPGLDR 86 (159)
T ss_pred HHHHHHHHHHHCCCEEEEEEEEecCCCeEEEEEEeCCCC--CCH-HHHHHHHHHHHHHHcccccCCCCeEEEEcCCCCCC
Confidence 344566789999999999999987654333445554444 332 47888888888888643 466899999988 55
Q ss_pred ccHHHHHHHHHHhCCc
Q 017268 273 VGLLSDITRIFRENSL 288 (374)
Q Consensus 273 pGLL~~It~~L~~~~i 288 (374)
| |...-..-.-.|-
T Consensus 87 p--L~~~~~f~r~~G~ 100 (159)
T PRK14647 87 P--LKKEADYERYAGR 100 (159)
T ss_pred c--CCCHHHHHHhCCc
Confidence 5 4444444444443
No 246
>PRK14637 hypothetical protein; Provisional
Probab=76.58 E-value=33 Score=29.88 Aligned_cols=89 Identities=11% Similarity=0.085 Sum_probs=59.6
Q ss_pred CcchHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHHhhcc-CCceEEEEEeC--
Q 017268 194 RPKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRHVDGLPISSEAERERVIQCLEAAIERRA-SEGLELELCTE-- 270 (374)
Q Consensus 194 rpGLl~~i~~~l~~~glnI~~A~i~T~~g~~~dvF~V~~~~g~~~~~~~~~~~L~~~L~~~L~~r~-~~~tvieV~~~-- 270 (374)
-.|....+..++..+|+.+.+......++.-.-..+|..+.| ++- +.++++-+.|...|+.-. ...+.+||+++
T Consensus 7 ~~~~~~~v~p~~~~~g~eLvdve~~~~~~~~~lrV~ID~~~g--V~i-ddC~~vSr~Is~~LD~~~~~~~y~LEVSSPGl 83 (151)
T PRK14637 7 DLGYFSECEPVVEGLGCKLVDLSRRVQQAQGRVRAVIYSAGG--VGL-DDCARVHRILVPRLEALGGVRDVFLEVSSPGI 83 (151)
T ss_pred cccHHHHHHHHHHhcCCEEEEEEEEecCCCcEEEEEEECCCC--CCH-HHHHHHHHHHHHHhcccccccCcEEEEeCCCC
Confidence 357788899999999999999999987654333444554444 332 477888888877775422 34689999987
Q ss_pred CCccHHHHHHHHHHhCC
Q 017268 271 DRVGLLSDITRIFRENS 287 (374)
Q Consensus 271 DRpGLL~~It~~L~~~~ 287 (374)
||| |...-..-.-.|
T Consensus 84 dRp--L~~~~~f~r~~G 98 (151)
T PRK14637 84 ERV--IKNAAEFSIFVG 98 (151)
T ss_pred CCC--CCCHHHHHHhCC
Confidence 555 444444444434
No 247
>cd04933 ACT_AK1-AT_1 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1). This CD includes the first of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine. This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. Like the Escherichia coli AKIII (LysC), Arabidopsis AK1 binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. A loop in common is involved in the binding of both Lys and S-adenosylmethionine providing an explanation for the synergistic inhibition by these effectors. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=76.54 E-value=14 Score=28.43 Aligned_cols=58 Identities=14% Similarity=0.208 Sum_probs=36.7
Q ss_pred eCCCccHHHHHHHHHHhCCceEEEEEEeecCCeeeeEEEEEcCCCCCCC--hhHHHHHHHHHhh
Q 017268 269 TEDRVGLLSDITRIFRENSLSIKRAEISTIGGKVKDTFYVTDVTGNPVD--PKIIDSIRRQIGH 330 (374)
Q Consensus 269 ~~DRpGLL~~It~~L~~~~i~I~~a~i~T~g~~~~D~Fyv~d~~g~~l~--~~~~~~l~~~l~~ 330 (374)
.++.||++++|.++|++.|++|...- + ++ ..=.|-+...+...+. ...+++|+++|+.
T Consensus 11 ~~~~~g~~a~IF~~La~~~InVDmI~--q-s~-~sISftV~~sd~~~~~~~~~~l~~~~~~~~~ 70 (78)
T cd04933 11 MLGQYGFLAKVFSIFETLGISVDVVA--T-SE-VSISLTLDPSKLWSRELIQQELDHVVEELEK 70 (78)
T ss_pred CCCccCHHHHHHHHHHHcCCcEEEEE--e-cC-CEEEEEEEhhhhhhhhhHHHHHHHHHHHHHH
Confidence 46889999999999999999999884 2 23 3345666443221111 1244455555543
No 248
>PRK14639 hypothetical protein; Provisional
Probab=76.34 E-value=29 Score=29.84 Aligned_cols=85 Identities=15% Similarity=0.212 Sum_probs=58.1
Q ss_pred HHHHHHhCCceEEEEEEEecCCeEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHHhhc--cCCceEEEEEeC--CCccHH
Q 017268 201 IVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRHVDGLPISSEAERERVIQCLEAAIERR--ASEGLELELCTE--DRVGLL 276 (374)
Q Consensus 201 i~~~l~~~glnI~~A~i~T~~g~~~dvF~V~~~~g~~~~~~~~~~~L~~~L~~~L~~r--~~~~tvieV~~~--DRpGLL 276 (374)
+..++..+|+.+.+......++..+-..+|..+.| ++- +.++++-+.|...|+.. .+..|.+||+++ ||| |
T Consensus 3 ~ep~~~~~G~eLvdve~~~~~~~~~lrV~Id~~~g--v~i-ddC~~vSr~is~~LD~~d~i~~~Y~LEVSSPGl~Rp--L 77 (140)
T PRK14639 3 LEALCKECGVSFYDDELVSENGRKIYRVYITKEGG--VNL-DDCERLSELLSPIFDVEPPVSGEYFLEVSSPGLERK--L 77 (140)
T ss_pred hhHhHHhCCCEEEEEEEEecCCCcEEEEEEeCCCC--CCH-HHHHHHHHHHHHHhccccccCCCeEEEEeCCCCCCc--C
Confidence 34578899999999999987765544556654444 443 47888888888888643 466899999987 555 4
Q ss_pred HHHHHHHHhCCceE
Q 017268 277 SDITRIFRENSLSI 290 (374)
Q Consensus 277 ~~It~~L~~~~i~I 290 (374)
...-..-.-.|-.|
T Consensus 78 ~~~~~f~r~~G~~v 91 (140)
T PRK14639 78 SKIEHFAKSIGELV 91 (140)
T ss_pred CCHHHHHHhCCCEE
Confidence 44444444445443
No 249
>cd04922 ACT_AKi-HSDH-ThrA_2 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). This CD includes the second of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathwa
Probab=75.56 E-value=26 Score=24.83 Aligned_cols=44 Identities=14% Similarity=0.240 Sum_probs=31.3
Q ss_pred EEEEEe---CCccchHHHHHHHHHhcCCeEEEEEEEeeCCeeEEEEEEe
Q 017268 51 SIEFTG---TDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVT 96 (374)
Q Consensus 51 ~I~I~~---~DrpGL~a~I~~vL~~~glnI~~A~I~T~~~~~~dvf~V~ 96 (374)
.|.++| ++.+|++++|..+|+.+|++|.--...+ . .....|.|.
T Consensus 3 ~isvvg~~~~~~~~~~~~i~~~l~~~~I~v~~i~~~~-s-~~~is~~v~ 49 (66)
T cd04922 3 ILALVGDGMAGTPGVAATFFSALAKANVNIRAIAQGS-S-ERNISAVID 49 (66)
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEecC-c-ccEEEEEEe
Confidence 466776 4789999999999999999997543322 2 233456664
No 250
>cd04868 ACT_AK-like ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes each of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). Typically, AK consists of two ACT domains in a tandem repeat, but the second ACT domain is inserted within the first, resulting in, what is normally the terminal beta strand of ACT2, formed from a region N-terminal of ACT1. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Aspartokinase is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of aspartokinase with different repressors and allosteric inhibitors. Pairs of ACT domains are proposed to specifically bind am
Probab=75.52 E-value=6.5 Score=26.76 Aligned_cols=33 Identities=12% Similarity=0.215 Sum_probs=26.8
Q ss_pred EEEEEeCC---CccHHHHHHHHHHhCCceEEEEEEe
Q 017268 264 ELELCTED---RVGLLSDITRIFRENSLSIKRAEIS 296 (374)
Q Consensus 264 vieV~~~D---RpGLL~~It~~L~~~~i~I~~a~i~ 296 (374)
.|+|.+.+ .||.++++.++|++.+++|.....+
T Consensus 2 ~i~v~g~~~~~~~~~~~~i~~~l~~~~i~i~~i~~~ 37 (60)
T cd04868 2 KVSIVGVGMRGTPGVAAKIFSALAEAGINVDMISQS 37 (60)
T ss_pred EEEEECCCCCCCCCHHHHHHHHHHHCCCcEEEEEcC
Confidence 45565555 8999999999999999999877543
No 251
>cd04937 ACT_AKi-DapG-BS_2 ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI. This CD includes the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) strain 168), Clostridia, and Actinobacteria bacterial species. In B. subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive AK isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The BS AKI is tetrameric consisting of two alpha and two beta subunits; th
Probab=75.24 E-value=7.6 Score=28.14 Aligned_cols=28 Identities=11% Similarity=0.290 Sum_probs=24.5
Q ss_pred EEEEEeC---CCccHHHHHHHHHHhCCceEE
Q 017268 264 ELELCTE---DRVGLLSDITRIFRENSLSIK 291 (374)
Q Consensus 264 vieV~~~---DRpGLL~~It~~L~~~~i~I~ 291 (374)
.|.|.+. +.||++.++..+|.+.|++|.
T Consensus 3 ~isvvG~~~~~~~gi~~~if~aL~~~~I~v~ 33 (64)
T cd04937 3 KVTIIGSRIRGVPGVMAKIVGALSKEGIEIL 33 (64)
T ss_pred EEEEECCCccCCcCHHHHHHHHHHHCCCCEE
Confidence 4666665 889999999999999999995
No 252
>PRK14643 hypothetical protein; Provisional
Probab=75.08 E-value=39 Score=29.83 Aligned_cols=92 Identities=9% Similarity=0.056 Sum_probs=61.7
Q ss_pred hHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEEe---CCCCCCCCHHHHHHHHHHHHHHHhh--ccCCceEEEEEeCC
Q 017268 197 LLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRH---VDGLPISSEAERERVIQCLEAAIER--RASEGLELELCTED 271 (374)
Q Consensus 197 Ll~~i~~~l~~~glnI~~A~i~T~~g~~~dvF~V~~---~~g~~~~~~~~~~~L~~~L~~~L~~--r~~~~tvieV~~~D 271 (374)
+-..+..++..+|+.+.+....+.++..+-..+|.+ ++| .++- +.++.+-+.+...|+. ..+..|.+||++|.
T Consensus 11 l~~l~~p~~~~~G~eL~die~~~~~~~~~lrV~Id~~~~~~g-gvtl-dDC~~vSr~is~~LD~~d~i~~~Y~LEVSSPG 88 (164)
T PRK14643 11 INELVNKELEVLNLKVYEINNLKEFENDMIQILVEDILQANK-PLDF-DILIKANDLVSNKIDQFIKTSEKYLLEISSSG 88 (164)
T ss_pred HHHHHHHHHHhcCCEEEEEEEEecCCCcEEEEEEecCCCcCC-CcCH-HHHHHHHHHHHHHhCccCCCCCCeEEEecCCC
Confidence 445566788999999999999998765544566654 223 2443 4788888888888863 35678999999884
Q ss_pred CccHHHHHHHHHHhCCceE
Q 017268 272 RVGLLSDITRIFRENSLSI 290 (374)
Q Consensus 272 RpGLL~~It~~L~~~~i~I 290 (374)
=---|...-..-.-.|=.|
T Consensus 89 leRpL~~~~df~r~~G~~V 107 (164)
T PRK14643 89 IEKQIRSQEELVKALNQWV 107 (164)
T ss_pred CCCCCCCHHHHHHhcCCeE
Confidence 3333555555555555443
No 253
>cd04913 ACT_AKii-LysC-BS-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related proteins. This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive aspartokinase isoenzymes. The B. subtilis 168 AKII is induced by methionine and repressed and inhibited by lysine. Although Corynebacterium glutamicum is known to contain a single aspartokinase, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is fee
Probab=75.00 E-value=19 Score=25.93 Aligned_cols=41 Identities=22% Similarity=0.257 Sum_probs=29.0
Q ss_pred eCCccchHHHHHHHHHhcCCeEEEEEEEeeCC-eeEEEEEEe
Q 017268 56 GTDRPGLFSEVCAVLADLHCNVVNAEIWTHND-RAAAVVHVT 96 (374)
Q Consensus 56 ~~DrpGL~a~I~~vL~~~glnI~~A~I~T~~~-~~~dvf~V~ 96 (374)
.+|.+|.++++..+|+.+|+||.--......+ .....|.|.
T Consensus 9 ~~~~~g~~~~i~~~L~~~~I~i~~i~~~~~~~~~~~is~~v~ 50 (75)
T cd04913 9 VPDKPGVAAKIFGALAEANINVDMIVQNVSRDGTTDISFTVP 50 (75)
T ss_pred CCCCCcHHHHHHHHHHHcCCeEEEEEeCCCCCCcEEEEEEec
Confidence 47899999999999999999998443322222 233456664
No 254
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=74.83 E-value=3.6 Score=43.11 Aligned_cols=36 Identities=33% Similarity=0.599 Sum_probs=33.2
Q ss_pred EEEEEeCCCccHHHHHHHHHHhCCceEEEEEEeecC
Q 017268 264 ELELCTEDRVGLLSDITRIFRENSLSIKRAEISTIG 299 (374)
Q Consensus 264 vieV~~~DRpGLL~~It~~L~~~~i~I~~a~i~T~g 299 (374)
.++|.|.||.|+..+|...|..++||+....|...|
T Consensus 2 rl~~~~~dr~g~~~~~l~~~~~~~~~~~~~e~~~~~ 37 (520)
T PRK10820 2 RLEVFCEDRLGLTRELLDLLVLRSIDLRGIEIDPIG 37 (520)
T ss_pred eEEEEeeccccHHHHHHHHHHhcCCCccEEEEcCCC
Confidence 479999999999999999999999999999997753
No 255
>PRK00092 ribosome maturation protein RimP; Reviewed
Probab=74.64 E-value=33 Score=29.80 Aligned_cols=75 Identities=19% Similarity=0.189 Sum_probs=53.0
Q ss_pred hHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHHhhc--cCCceEEEEEeC--CC
Q 017268 197 LLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRHVDGLPISSEAERERVIQCLEAAIERR--ASEGLELELCTE--DR 272 (374)
Q Consensus 197 Ll~~i~~~l~~~glnI~~A~i~T~~g~~~dvF~V~~~~g~~~~~~~~~~~L~~~L~~~L~~r--~~~~tvieV~~~--DR 272 (374)
+-..+..++..+|+.+.+..+...++.-.-..+|..+.| ++ -+.++.+-+.+...|+.. .+..|.+||+++ ||
T Consensus 9 i~~~~~~~~~~~g~~l~dv~~~~~~~~~~l~V~Id~~~g--v~-iddc~~~Sr~is~~LD~~d~i~~~Y~LEVSSPGi~R 85 (154)
T PRK00092 9 LTELIEPVVEALGYELVDVEYVKEGRDSTLRIYIDKEGG--ID-LDDCEEVSRQISAVLDVEDPIPGAYTLEVSSPGLDR 85 (154)
T ss_pred HHHHHHHHHHHCCCEEEEEEEEecCCCcEEEEEEECCCC--CC-HHHHHHHHHHHHHHhccccCCCCCeEEEEeCCCCCC
Confidence 445567889999999999999987654433444554444 33 347888888888888643 356799999987 55
Q ss_pred cc
Q 017268 273 VG 274 (374)
Q Consensus 273 pG 274 (374)
|=
T Consensus 86 pL 87 (154)
T PRK00092 86 PL 87 (154)
T ss_pred cC
Confidence 53
No 256
>PRK10622 pheA bifunctional chorismate mutase/prephenate dehydratase; Provisional
Probab=74.29 E-value=12 Score=37.69 Aligned_cols=50 Identities=12% Similarity=0.129 Sum_probs=39.5
Q ss_pred EEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEe-cCCeEEEEEEEEeC
Q 017268 184 YTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNT-GRTEAYQEFYIRHV 233 (374)
Q Consensus 184 ~t~v~V~~~DrpGLl~~i~~~l~~~glnI~~A~i~T-~~g~~~dvF~V~~~ 233 (374)
.+.+.+..+|+||.|+++...|+.+|+|+..-...- .++...-.|+|.-.
T Consensus 297 ktsl~~~~~~~pGaL~~~L~~Fa~~giNLtkIeSRP~~~~~~~Y~Ffid~e 347 (386)
T PRK10622 297 KTTLLMATGQQAGALVEALLVLRNHNLIMTKLESRPIHGNPWEEMFYLDVQ 347 (386)
T ss_pred cEEEEEEcCCCCcHHHHHHHHHHHcCCCeeEEEeeecCCCCceEEEEEEEe
Confidence 566667778999999999999999999999877764 44445556777653
No 257
>cd04891 ACT_AK-LysC-DapG-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII and related proteins. This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the first and third, of four, ACT domains present in cyanobacteria AK. Also included are the N-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (Bacillus subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=73.82 E-value=12 Score=25.73 Aligned_cols=42 Identities=19% Similarity=0.273 Sum_probs=30.5
Q ss_pred eCCCccHHHHHHHHHHhCCceEEEEEEeecC-CeeeeEEEEEc
Q 017268 269 TEDRVGLLSDITRIFRENSLSIKRAEISTIG-GKVKDTFYVTD 310 (374)
Q Consensus 269 ~~DRpGLL~~It~~L~~~~i~I~~a~i~T~g-~~~~D~Fyv~d 310 (374)
.+|.||++.++.++|++.|++|........+ +...=.|.+.+
T Consensus 8 ~~~~~~~~~~i~~~L~~~~i~i~~i~~~~~~~~~~~is~~v~~ 50 (61)
T cd04891 8 VPDKPGVAAKIFSALAEAGINVDMIVQSVSRGGTTDISFTVPK 50 (61)
T ss_pred CCCCCcHHHHHHHHHHHcCCcEEEEEEcCCCCCcEEEEEEEeH
Confidence 5789999999999999999999887653222 22334566643
No 258
>cd04891 ACT_AK-LysC-DapG-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII and related proteins. This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the first and third, of four, ACT domains present in cyanobacteria AK. Also included are the N-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (Bacillus subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=73.70 E-value=11 Score=25.82 Aligned_cols=42 Identities=19% Similarity=0.199 Sum_probs=30.1
Q ss_pred eCCccchHHHHHHHHHhcCCeEEEEEEEeeCCe-eEEEEEEec
Q 017268 56 GTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDR-AAAVVHVTD 97 (374)
Q Consensus 56 ~~DrpGL~a~I~~vL~~~glnI~~A~I~T~~~~-~~dvf~V~~ 97 (374)
.+|.+|.++++..+|..+|++|.........++ ....|.|.+
T Consensus 8 ~~~~~~~~~~i~~~L~~~~i~i~~i~~~~~~~~~~~is~~v~~ 50 (61)
T cd04891 8 VPDKPGVAAKIFSALAEAGINVDMIVQSVSRGGTTDISFTVPK 50 (61)
T ss_pred CCCCCcHHHHHHHHHHHcCCcEEEEEEcCCCCCcEEEEEEEeH
Confidence 578899999999999999999976544322222 344566643
No 259
>cd04912 ACT_AKiii-LysC-EC-like_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC) and plants, (Zea mays Ask1, Ask2, and Arabidopsis thaliana AK1). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Like the A. thaliana AK1 (AK1-AT), the E. coli AKIII (LysC) has two bound feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. The lysine-sensitive plant isoenzyme is synergistically inhibited by S-adenosylmethionine. A homolog of this group appears to be the Saccharomyces cerevisiae AK (Hom3) which clusters with this group as well. Members of this CD
Probab=72.50 E-value=22 Score=26.66 Aligned_cols=62 Identities=18% Similarity=0.314 Sum_probs=39.6
Q ss_pred eEEEEE---eCCCccHHHHHHHHHHhCCceEEEEEEeecCCeeeeEEEEEcCCCCCC-ChhHHHHHHHHHhh
Q 017268 263 LELELC---TEDRVGLLSDITRIFRENSLSIKRAEISTIGGKVKDTFYVTDVTGNPV-DPKIIDSIRRQIGH 330 (374)
Q Consensus 263 tvieV~---~~DRpGLL~~It~~L~~~~i~I~~a~i~T~g~~~~D~Fyv~d~~g~~l-~~~~~~~l~~~l~~ 330 (374)
+.|.|. ..+.||++.+|..+|++.|+++...- +.+ ..=.|.+... .+. ++..+.+|.++|+.
T Consensus 2 ~~Vsi~g~~l~~~~g~~~~if~~L~~~~I~v~~i~--~s~--~~is~~v~~~--~~~~~~~~~~~~~~~l~~ 67 (75)
T cd04912 2 TLLNIKSNRMLGAHGFLAKVFEIFAKHGLSVDLIS--TSE--VSVSLTLDPT--KNLSDQLLLDALVKDLSQ 67 (75)
T ss_pred EEEEEEcCCCCCCccHHHHHHHHHHHcCCeEEEEE--cCC--cEEEEEEEch--hhccchHHHHHHHHHHHh
Confidence 345664 35789999999999999999997663 322 3334555432 221 12356677777665
No 260
>cd04934 ACT_AK-Hom3_1 CT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydro
Probab=72.39 E-value=20 Score=27.06 Aligned_cols=54 Identities=15% Similarity=0.186 Sum_probs=36.0
Q ss_pred CCCccHHHHHHHHHHhCCceEEEEEEeecCCeeeeEEEEEcCCCCCCChhHHHHHHHHHhh
Q 017268 270 EDRVGLLSDITRIFRENSLSIKRAEISTIGGKVKDTFYVTDVTGNPVDPKIIDSIRRQIGH 330 (374)
Q Consensus 270 ~DRpGLL~~It~~L~~~~i~I~~a~i~T~g~~~~D~Fyv~d~~g~~l~~~~~~~l~~~l~~ 330 (374)
.-.||++++|.++|+++|++|...-. ++ ..=.|-+.. . .+.++.+++|.++|..
T Consensus 12 ~~~~g~~~~If~~la~~~I~vd~I~~---s~-~~isftv~~--~-~~~~~~l~~l~~el~~ 65 (73)
T cd04934 12 SLSHGFLARIFAILDKYRLSVDLIST---SE-VHVSMALHM--E-NAEDTNLDAAVKDLQK 65 (73)
T ss_pred ccccCHHHHHHHHHHHcCCcEEEEEe---CC-CEEEEEEeh--h-hcChHHHHHHHHHHHH
Confidence 35699999999999999999998842 33 223444432 2 2222366677777765
No 261
>COG4492 PheB ACT domain-containing protein [General function prediction only]
Probab=72.05 E-value=19 Score=30.69 Aligned_cols=52 Identities=13% Similarity=0.134 Sum_probs=42.1
Q ss_pred CCCEEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEe-cCCeEEEEEEEEe
Q 017268 181 EKDYTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNT-GRTEAYQEFYIRH 232 (374)
Q Consensus 181 ~~~~t~v~V~~~DrpGLl~~i~~~l~~~glnI~~A~i~T-~~g~~~dvF~V~~ 232 (374)
...-..+.+.-.||.|.|+++..++++.++||..-+..- ..|++--+..+..
T Consensus 69 k~ri~TL~l~ledr~G~LS~vLd~iA~~~~nvLTI~Q~ipl~g~Anvtlsi~~ 121 (150)
T COG4492 69 KERIITLSLSLEDRVGILSDVLDVIAREEINVLTIHQTIPLQGRANVTLSIDT 121 (150)
T ss_pred cceEEEEEEEEhhhhhhHHHHHHHHHHhCCcEEEEecccccCceeeEEEEEEc
Confidence 345566888999999999999999999999999888765 5787765555544
No 262
>PRK08526 threonine dehydratase; Provisional
Probab=71.82 E-value=47 Score=33.60 Aligned_cols=65 Identities=15% Similarity=0.263 Sum_probs=45.2
Q ss_pred CceEEEEEeCCCccHHHHHHHHHHhCCceEEEEEEeecCC-----eeeeEEEEEcCCCCCCChhHHHHHHHHHhh
Q 017268 261 EGLELELCTEDRVGLLSDITRIFRENSLSIKRAEISTIGG-----KVKDTFYVTDVTGNPVDPKIIDSIRRQIGH 330 (374)
Q Consensus 261 ~~tvieV~~~DRpGLL~~It~~L~~~~i~I~~a~i~T~g~-----~~~D~Fyv~d~~g~~l~~~~~~~l~~~l~~ 330 (374)
+...+.|.-+||||-|.++++.+.+.+.||....=..... .+.-.+-+... +++++++|.+.|..
T Consensus 325 r~~~~~~~~~d~pg~l~~~~~~~~~~~~~i~~~~~~r~~~~~~~~~~~~~~~~e~~-----~~~~~~~~~~~l~~ 394 (403)
T PRK08526 325 RKMKLHVTLVDKPGALMGLTDILKEANANIVKIDYDRFSTKLDYGDAMISITLETK-----GKEHQEEIRKILTE 394 (403)
T ss_pred CEEEEEEEcCCCCCHHHHHHHHHccCCCcEEEEEEEeccCCCCCccEEEEEEEEeC-----CHHHHHHHHHHHHH
Confidence 4578999999999999999999999999998776533221 12222222222 24677777777754
No 263
>PRK09181 aspartate kinase; Validated
Probab=71.80 E-value=1.3e+02 Score=31.24 Aligned_cols=105 Identities=16% Similarity=0.147 Sum_probs=64.5
Q ss_pred CeEEEEEEeC---CccchHHHHHHHHHhcCCeEEEEEEEeeCCeeEEEEEEecCCCCCCCCCHHHHHHHHHHHHHHHcCC
Q 017268 48 EHTSIEFTGT---DRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLRGY 124 (374)
Q Consensus 48 ~~~~I~I~~~---DrpGL~a~I~~vL~~~glnI~~A~I~T~~~~~~dvf~V~~~~~g~~~~~~~~~~~l~~~L~~~L~~~ 124 (374)
+.+.|+|.+. +.+|+.++|..+|+.+|+||. -+.+ ++ ....|.|.. . . .+++++.+.|.+.+..+
T Consensus 328 ~~~~i~i~~~~~~~~~g~~~~if~~l~~~~i~v~--~i~s-s~-~sis~~v~~---~--~---~~~~~~~~~L~~~~~~~ 395 (475)
T PRK09181 328 KVFALEVFDQDMVGEDGYDLEILEILTRHKVSYI--SKAT-NA-NTITHYLWG---S--L---KTLKRVIAELEKRYPNA 395 (475)
T ss_pred CEEEEEEcCCCCCCcchHHHHHHHHHHHcCCeEE--EEEe-cC-cEEEEEEcC---C--h---HHHHHHHHHHHHhcCCc
Confidence 5556666543 688999999999999999997 3333 22 334566642 1 1 22334433343322110
Q ss_pred CcccccccccCCCCCCcchhhhhhhcccCchhhhhhhhccccCCCCCCCEEEEEcCCCCEEEEEEEeCC--CcchHHHHH
Q 017268 125 DDFRKAKTSLSPPGIMNRERRLHQIMFDDRDYERVEKAVGRVEDKSSRPQVTVLNIEKDYTVITMRSKD--RPKLLFDIV 202 (374)
Q Consensus 125 ~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~t~v~V~~~D--rpGLl~~i~ 202 (374)
.|.. .+...|.+++.. +||+.+++.
T Consensus 396 -------------------------------------------------~i~~----~~~a~VsvVG~gm~~~gv~ak~f 422 (475)
T PRK09181 396 -------------------------------------------------EVTV----RKVAIVSAIGSNIAVPGVLAKAV 422 (475)
T ss_pred -------------------------------------------------eEEE----CCceEEEEeCCCCCcccHHHHHH
Confidence 0110 134556666543 899999999
Q ss_pred HHHHhCCceEEEEEE
Q 017268 203 CTLTDMQYVVFHGMV 217 (374)
Q Consensus 203 ~~l~~~glnI~~A~i 217 (374)
.+|++.|+||..-..
T Consensus 423 ~aL~~~~Ini~~i~q 437 (475)
T PRK09181 423 QALAEAGINVLALHQ 437 (475)
T ss_pred HHHHHCCCCeEEEEe
Confidence 999999999975433
No 264
>cd04919 ACT_AK-Hom3_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydrodynamic size. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=71.60 E-value=34 Score=24.36 Aligned_cols=44 Identities=14% Similarity=0.188 Sum_probs=31.3
Q ss_pred EEEEEeC---CccchHHHHHHHHHhcCCeEEEEEEEeeCCeeEEEEEEe
Q 017268 51 SIEFTGT---DRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVT 96 (374)
Q Consensus 51 ~I~I~~~---DrpGL~a~I~~vL~~~glnI~~A~I~T~~~~~~dvf~V~ 96 (374)
.|.+++. +++|..+++..+|+.+|++|.--...+ .+ ....|.|.
T Consensus 3 ~isvvg~~~~~~~~~~~~if~~L~~~~I~v~~i~q~~-s~-~~isf~v~ 49 (66)
T cd04919 3 ILSLVGKHMKNMIGIAGRMFTTLADHRINIEMISQGA-SE-INISCVID 49 (66)
T ss_pred EEEEECCCCCCCcCHHHHHHHHHHHCCCCEEEEEecC-cc-ceEEEEEe
Confidence 4667765 678999999999999999997554433 22 33445554
No 265
>cd04932 ACT_AKiii-LysC-EC_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The E. coli AKIII (LysC) binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=71.51 E-value=41 Score=25.37 Aligned_cols=38 Identities=11% Similarity=-0.030 Sum_probs=28.3
Q ss_pred eCCCcchHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEEe
Q 017268 191 SKDRPKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRH 232 (374)
Q Consensus 191 ~~DrpGLl~~i~~~l~~~glnI~~A~i~T~~g~~~dvF~V~~ 232 (374)
.++.||+++++..+|+++|+||..-. + ++ .--.|.|..
T Consensus 11 ~~~~~g~~~~IF~~La~~~I~VDmI~--~-s~-~~iSftv~~ 48 (75)
T cd04932 11 MLHAQGFLAKVFGILAKHNISVDLIT--T-SE-ISVALTLDN 48 (75)
T ss_pred CCCCcCHHHHHHHHHHHcCCcEEEEe--e-cC-CEEEEEEec
Confidence 47889999999999999999998653 2 22 333455654
No 266
>PRK14638 hypothetical protein; Provisional
Probab=71.42 E-value=44 Score=29.03 Aligned_cols=87 Identities=15% Similarity=0.126 Sum_probs=58.5
Q ss_pred hHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHHhhc--cCCceEEEEEeC--CC
Q 017268 197 LLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRHVDGLPISSEAERERVIQCLEAAIERR--ASEGLELELCTE--DR 272 (374)
Q Consensus 197 Ll~~i~~~l~~~glnI~~A~i~T~~g~~~dvF~V~~~~g~~~~~~~~~~~L~~~L~~~L~~r--~~~~tvieV~~~--DR 272 (374)
+-..+..++..+|+.+.+......++...-..+|..+.|. ++- +.++.+-+.|...|+.. .+..|.+||+++ ||
T Consensus 10 i~~~~~~i~~~~G~elvdve~~~~~~~~~lrV~ID~~~G~-v~l-ddC~~vSr~is~~LD~~d~i~~~Y~LEVSSPGldR 87 (150)
T PRK14638 10 VRKEAERIAEEQGLEIFDVQYRRESRGWVLRIIIDNPVGY-VSV-RDCELFSREIERFLDREDLIEHSYTLEVSSPGLDR 87 (150)
T ss_pred HHHHHHHHHHHcCCEEEEEEEEecCCCcEEEEEEECCCCC-cCH-HHHHHHHHHHHHHhccccccCCceEEEEeCCCCCC
Confidence 3445677899999999999999876543334556554442 332 47888888888888632 456899999987 55
Q ss_pred ccHHHHHHHHHHhCC
Q 017268 273 VGLLSDITRIFRENS 287 (374)
Q Consensus 273 pGLL~~It~~L~~~~ 287 (374)
| |...-..-.-.|
T Consensus 88 p--L~~~~~f~r~~G 100 (150)
T PRK14638 88 P--LRGPKDYVRFTG 100 (150)
T ss_pred C--CCCHHHHHHhCC
Confidence 5 444444444444
No 267
>COG3978 Acetolactate synthase (isozyme II), small (regulatory) subunit [Function unknown]
Probab=70.60 E-value=30 Score=26.86 Aligned_cols=49 Identities=10% Similarity=0.091 Sum_probs=41.0
Q ss_pred EEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEec--CCeEEEEEEEEe
Q 017268 184 YTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTG--RTEAYQEFYIRH 232 (374)
Q Consensus 184 ~t~v~V~~~DrpGLl~~i~~~l~~~glnI~~A~i~T~--~g~~~dvF~V~~ 232 (374)
.+.+.+.+.++|+.|.++.++....|..+.....++. +|.+---|.|..
T Consensus 3 qyqldl~ar~~pe~leRVLrvtrhRGF~vcamnmt~~~da~~~nie~tV~s 53 (86)
T COG3978 3 QYQLDLSARFNPETLERVLRVTRHRGFRVCAMNMTAAVDAGNANIELTVDS 53 (86)
T ss_pred eEEEeeeccCChHHHHHHHHHhhhcCeEEEEeecccccccccceEEEEEcC
Confidence 4678999999999999999999999999999998875 566655566654
No 268
>TIGR01124 ilvA_2Cterm threonine ammonia-lyase, biosynthetic, long form. Forms scoring between the trusted and noise cutoff tend to branch with this subgroup of threonine ammonia-lyase phylogenetically but have only a single copy of the C-terminal domain.
Probab=70.48 E-value=63 Score=33.75 Aligned_cols=110 Identities=11% Similarity=0.125 Sum_probs=69.6
Q ss_pred CCEEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHH------H
Q 017268 182 KDYTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRHVDGLPISSEAERERVIQCLEAA------I 255 (374)
Q Consensus 182 ~~~t~v~V~~~DrpGLl~~i~~~l~~~glnI~~A~i~T~~g~~~dvF~V~~~~g~~~~~~~~~~~L~~~L~~~------L 255 (374)
.....+.|.-|||||-|.+++.++.. .||...+-.-.+.....+|..-.-.+ ++..++|.+.|.+. +
T Consensus 323 ~re~~l~V~iPerPGal~~f~~~i~~--~nItef~yr~~~~~~a~v~vgie~~~-----~~~~~~l~~~L~~~Gy~~~dl 395 (499)
T TIGR01124 323 QREALLAVTIPEQPGSFLKFCELLGN--RNITEFNYRYADRKDAHIFVGVQLSN-----PQERQEILARLNDGGYSVVDL 395 (499)
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHhhh--cceEEEEEEecCCCeEEEEEEEEeCC-----HHHHHHHHHHHHHcCCCeEEC
Confidence 45677899999999999999999997 57776655433322233333322111 34677777777653 1
Q ss_pred h--------------hccCC---ceEEEEEeCCCccHHHHHHHHHHhCCceEEEEEEeecC
Q 017268 256 E--------------RRASE---GLELELCTEDRVGLLSDITRIFRENSLSIKRAEISTIG 299 (374)
Q Consensus 256 ~--------------~r~~~---~tvieV~~~DRpGLL~~It~~L~~~~i~I~~a~i~T~g 299 (374)
. ++.+. .-+..+.=+-|||-|.++..+|. -+-||...+-.-.|
T Consensus 396 s~ne~~k~h~r~~~g~~~~~~~~e~~~~~~fperpgaL~~Fl~~l~-~~~~It~f~Yr~~~ 455 (499)
T TIGR01124 396 TDDELAKLHVRYMVGGRPPHVENERLYSFEFPERPGALLRFLNTLQ-GYWNISLFHYRNHG 455 (499)
T ss_pred CCCHHHHHHHHhccCCCCCCCCCceEEEEeCCCCccHHHHHHHhcC-CCCceeeEEEecCC
Confidence 0 11221 35888999999999998877443 23467666643333
No 269
>PRK14633 hypothetical protein; Provisional
Probab=69.66 E-value=53 Score=28.49 Aligned_cols=87 Identities=17% Similarity=0.210 Sum_probs=60.0
Q ss_pred hHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHHhhc--cCCceEEEEEeC--CC
Q 017268 197 LLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRHVDGLPISSEAERERVIQCLEAAIERR--ASEGLELELCTE--DR 272 (374)
Q Consensus 197 Ll~~i~~~l~~~glnI~~A~i~T~~g~~~dvF~V~~~~g~~~~~~~~~~~L~~~L~~~L~~r--~~~~tvieV~~~--DR 272 (374)
+-..+..++..+|+.+.+......++..+ ..+|..+.| ++- +.++.+-+.|...|+.. .+..|.+||++| ||
T Consensus 6 i~~lv~p~~~~~G~eL~dve~~~~~~~~l-rV~ID~~~G--v~l-ddC~~vSr~i~~~LD~~d~i~~~Y~LEVSSPGldR 81 (150)
T PRK14633 6 LYEIVEPITADLGYILWGIEVVGSGKLTI-RIFIDHENG--VSV-DDCQIVSKEISAVFDVEDPVSGKYILEVSSPGMNR 81 (150)
T ss_pred HHHHHHHHHHHCCCEEEEEEEEeCCCcEE-EEEEeCCCC--CCH-HHHHHHHHHHHHHhccCcCCCCCeEEEEeCCCCCC
Confidence 34556788999999999999987766544 444554544 332 47888888888888642 467899999988 55
Q ss_pred ccHHHHHHHHHHhCCce
Q 017268 273 VGLLSDITRIFRENSLS 289 (374)
Q Consensus 273 pGLL~~It~~L~~~~i~ 289 (374)
| |...-..-.-.|=.
T Consensus 82 p--L~~~~~f~r~~G~~ 96 (150)
T PRK14633 82 Q--IFNIIQAQALVGFN 96 (150)
T ss_pred C--CCCHHHHHHhCCCe
Confidence 5 55555555555543
No 270
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=68.62 E-value=11 Score=37.60 Aligned_cols=34 Identities=26% Similarity=0.513 Sum_probs=31.4
Q ss_pred EEEEEeCCCccHHHHHHHHHHhCCceEEEEEEee
Q 017268 264 ELELCTEDRVGLLSDITRIFRENSLSIKRAEIST 297 (374)
Q Consensus 264 vieV~~~DRpGLL~~It~~L~~~~i~I~~a~i~T 297 (374)
.|+|.|.||.||..++...|...+|++....|.-
T Consensus 2 RleV~cedRlGltrelLdlLv~r~idl~~iEid~ 35 (511)
T COG3283 2 RLEVFCEDRLGLTRELLDLLVLRGIDLRGIEIDP 35 (511)
T ss_pred ceEEEehhhhchHHHHHHHHHhcccCccceeecC
Confidence 3799999999999999999999999999999843
No 271
>PRK14632 hypothetical protein; Provisional
Probab=67.45 E-value=52 Score=29.27 Aligned_cols=85 Identities=12% Similarity=0.120 Sum_probs=55.8
Q ss_pred hHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHHhhc--cCCceEEEEEeC--CC
Q 017268 197 LLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRHVDGLPISSEAERERVIQCLEAAIERR--ASEGLELELCTE--DR 272 (374)
Q Consensus 197 Ll~~i~~~l~~~glnI~~A~i~T~~g~~~dvF~V~~~~g~~~~~~~~~~~L~~~L~~~L~~r--~~~~tvieV~~~--DR 272 (374)
+-..+..++..+|+.+.+......+.+.+ ..+|..+.| ++- +.++.+-+.|...|+.. .+..|.+||+++ ||
T Consensus 10 i~~li~pv~~~~G~eLvdve~~~~~~~~l-rV~ID~~~G--V~l-dDC~~vSr~is~~LD~~d~i~~~Y~LEVSSPGldR 85 (172)
T PRK14632 10 IADMAGPFLASLGLELWGIELSYGGRTVV-RLFVDGPEG--VTI-DQCAEVSRHVGLALEVEDVISSAYVLEVSSPGLER 85 (172)
T ss_pred HHHHHHHHHHHCCCEEEEEEEEeCCCcEE-EEEEECCCC--CCH-HHHHHHHHHHHHHhcccccCCCCeEEEEeCCCCCC
Confidence 34456678899999999999775333444 445554444 332 47888888888888632 466899999987 55
Q ss_pred ccHHHHHHHHHHhCC
Q 017268 273 VGLLSDITRIFRENS 287 (374)
Q Consensus 273 pGLL~~It~~L~~~~ 287 (374)
| |...-..-.-.|
T Consensus 86 p--L~~~~~f~r~iG 98 (172)
T PRK14632 86 P--FFRAEQMSPYVG 98 (172)
T ss_pred c--CCCHHHHHHhCC
Confidence 5 444444444444
No 272
>PRK09466 metL bifunctional aspartate kinase II/homoserine dehydrogenase II; Provisional
Probab=65.54 E-value=1.1e+02 Score=34.13 Aligned_cols=100 Identities=9% Similarity=0.025 Sum_probs=64.1
Q ss_pred CEEEEEEEeC---CCcchHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHH-Hhhc
Q 017268 183 DYTVITMRSK---DRPKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRHVDGLPISSEAERERVIQCLEAA-IERR 258 (374)
Q Consensus 183 ~~t~v~V~~~---DrpGLl~~i~~~l~~~glnI~~A~i~T~~g~~~dvF~V~~~~g~~~~~~~~~~~L~~~L~~~-L~~r 258 (374)
+...|+|.+. +.+|.++++..+|+++|++|..-...+. +. .-.|.+... ..+.+.+.|+.. ...+
T Consensus 316 ~v~~i~i~~~~~~g~~g~~~~if~~l~~~~I~v~~i~~~~s-~~-sis~~i~~~---------~~~~~~~~l~~~~~~~~ 384 (810)
T PRK09466 316 DVCLIELQVPASHDFKLAQKELDQLLKRAQLRPLAVGVHPD-RQ-LLQLAYTSE---------VADSALKLLDDAALPGE 384 (810)
T ss_pred CEEEEEEecCCcCCcchHHHHHHHHHHHCCCeEEEEEecCC-Cc-EEEEEEeHH---------HHHHHHHHHHhhcCCCc
Confidence 4566777765 7889999999999999999875543322 22 223444321 223333334332 1111
Q ss_pred c---CCceEEEEEeC---CCccHHHHHHHHHHhCCceEEEE
Q 017268 259 A---SEGLELELCTE---DRVGLLSDITRIFRENSLSIKRA 293 (374)
Q Consensus 259 ~---~~~tvieV~~~---DRpGLL~~It~~L~~~~i~I~~a 293 (374)
. ..-.+|.|.+. .+||+..++..+|.+.||++...
T Consensus 385 i~v~~~~a~VsvVG~gm~~~~gv~~~~f~aL~~~~I~ii~~ 425 (810)
T PRK09466 385 LKLREGLALVALVGAGVTRNPLHCHRFYQQLKDQPVEFIWQ 425 (810)
T ss_pred EEEeCCeEEEEEeCCCcccCccHHHHHHHHHHhCCCcEEEE
Confidence 1 22467888775 68999999999999999998443
No 273
>PF05088 Bac_GDH: Bacterial NAD-glutamate dehydrogenase
Probab=63.85 E-value=52 Score=39.09 Aligned_cols=81 Identities=14% Similarity=0.119 Sum_probs=62.4
Q ss_pred CCCCeEEEEEEeCCccchHHHHHHHHHhcCCeEEEEEEEeeC---C--eeEEEEEEecCCCCCCCCCHHHHHHHHHHHHH
Q 017268 45 PTEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHN---D--RAAAVVHVTDHSTGYAIKDPKRLSTIKELLFN 119 (374)
Q Consensus 45 ~~~~~~~I~I~~~DrpGL~a~I~~vL~~~glnI~~A~I~T~~---~--~~~dvf~V~~~~~g~~~~~~~~~~~l~~~L~~ 119 (374)
...+.+.+.++.+.++..|+++.-+|..+|+.|++.+-+... + .+...|.+..+ .+..+.....++.+++.+..
T Consensus 485 ~~~~~~~lkiy~~~~~~~Ls~vlPilenlGl~V~~e~~~~i~~~~~~~~~i~~F~l~~~-~~~~~~~~~~~~~~~~a~~~ 563 (1528)
T PF05088_consen 485 AGPGRLRLKIYHPGEPLPLSDVLPILENLGLRVIDERPYEIRRADGRRVWIHDFGLQYP-DGDALDLDDIRERFEEAFEA 563 (1528)
T ss_pred CCCCeEEEEEEcCCCCcCHHHHHHHHHhCCCEEEEEecceeecCCCceEEEEEEEEecC-CCccccHHHHHHHHHHHHHH
Confidence 344678999999999999999999999999999999887742 2 24467888874 44434444566788888888
Q ss_pred HHcCCCc
Q 017268 120 VLRGYDD 126 (374)
Q Consensus 120 ~L~~~~~ 126 (374)
+..|...
T Consensus 564 v~~g~~e 570 (1528)
T PF05088_consen 564 VWNGRAE 570 (1528)
T ss_pred HhcCCCC
Confidence 8776544
No 274
>cd04921 ACT_AKi-HSDH-ThrA-like_1 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). This CD includes the first of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pat
Probab=62.92 E-value=56 Score=24.24 Aligned_cols=35 Identities=6% Similarity=0.069 Sum_probs=27.9
Q ss_pred EEEEE---eCCCccHHHHHHHHHHhCCceEEEEEEeec
Q 017268 264 ELELC---TEDRVGLLSDITRIFRENSLSIKRAEISTI 298 (374)
Q Consensus 264 vieV~---~~DRpGLL~~It~~L~~~~i~I~~a~i~T~ 298 (374)
.|+|. ..+.+|+++++.++|++.++++....-.+.
T Consensus 3 ~I~vvg~~~~~~~~~~~~i~~~L~~~~I~v~~i~~~~~ 40 (80)
T cd04921 3 LINIEGTGMVGVPGIAARIFSALARAGINVILISQASS 40 (80)
T ss_pred EEEEEcCCCCCCccHHHHHHHHHHHCCCcEEEEEecCC
Confidence 46664 348899999999999999999987765433
No 275
>cd04924 ACT_AK-Arch_2 ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). Included in this CD is the second of two ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). The first or N-terminal ACT domain of these proteins cluster with the ThrA-like ACT 1 domains (ACT_AKi-HSDH-ThrA-like_1) which includes the threonine-sensitive archaeal Methanococcus jannaschii aspartokinase ACT 1 domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=62.72 E-value=51 Score=23.17 Aligned_cols=45 Identities=7% Similarity=0.131 Sum_probs=32.7
Q ss_pred EEEEEeC---CCccHHHHHHHHHHhCCceEEEEEEeecCCeeeeEEEEEc
Q 017268 264 ELELCTE---DRVGLLSDITRIFRENSLSIKRAEISTIGGKVKDTFYVTD 310 (374)
Q Consensus 264 vieV~~~---DRpGLL~~It~~L~~~~i~I~~a~i~T~g~~~~D~Fyv~d 310 (374)
+|.+.+. +.||++.++.+.|++.|+++......+.+ ..=.|.+..
T Consensus 3 ~isivg~~~~~~~~~~~~i~~~L~~~~I~v~~i~q~~s~--~~isf~i~~ 50 (66)
T cd04924 3 VVAVVGSGMRGTPGVAGRVFGALGKAGINVIMISQGSSE--YNISFVVAE 50 (66)
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEecCcc--ceEEEEEeH
Confidence 4566664 78999999999999999999888654422 223466644
No 276
>cd04924 ACT_AK-Arch_2 ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). Included in this CD is the second of two ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). The first or N-terminal ACT domain of these proteins cluster with the ThrA-like ACT 1 domains (ACT_AKi-HSDH-ThrA-like_1) which includes the threonine-sensitive archaeal Methanococcus jannaschii aspartokinase ACT 1 domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=62.29 E-value=52 Score=23.13 Aligned_cols=45 Identities=18% Similarity=0.271 Sum_probs=31.4
Q ss_pred EEEEEeC---CccchHHHHHHHHHhcCCeEEEEEEEeeCCeeEEEEEEec
Q 017268 51 SIEFTGT---DRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTD 97 (374)
Q Consensus 51 ~I~I~~~---DrpGL~a~I~~vL~~~glnI~~A~I~T~~~~~~dvf~V~~ 97 (374)
.|.+++. +.+|+++++...|+++|++|.--...+ .+ ....|.+..
T Consensus 3 ~isivg~~~~~~~~~~~~i~~~L~~~~I~v~~i~q~~-s~-~~isf~i~~ 50 (66)
T cd04924 3 VVAVVGSGMRGTPGVAGRVFGALGKAGINVIMISQGS-SE-YNISFVVAE 50 (66)
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEecC-cc-ceEEEEEeH
Confidence 5667765 678999999999999999997544333 22 333466643
No 277
>TIGR00657 asp_kinases aspartate kinase. The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. This may be a feature of a number of closely related forms, including a paralog from B. subtilis.
Probab=62.10 E-value=1.9e+02 Score=29.49 Aligned_cols=34 Identities=12% Similarity=0.059 Sum_probs=28.3
Q ss_pred CEEEEEEEe---CCCcchHHHHHHHHHhCCceEEEEE
Q 017268 183 DYTVITMRS---KDRPKLLFDIVCTLTDMQYVVFHGM 216 (374)
Q Consensus 183 ~~t~v~V~~---~DrpGLl~~i~~~l~~~glnI~~A~ 216 (374)
+...|++.+ .+.||+++++..+|+..|+||....
T Consensus 377 ~~a~VsvvG~~~~~~~g~~a~if~~La~~~Inv~~i~ 413 (441)
T TIGR00657 377 GLAKVSLVGAGMKSAPGVASKIFEALAQNGINIEMIS 413 (441)
T ss_pred CeEEEEEEcCCCCCCCchHHHHHHHHHHCCCCEEEEE
Confidence 456677754 4789999999999999999997654
No 278
>cd04916 ACT_AKiii-YclM-BS_2 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. B. subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from B. subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=61.81 E-value=54 Score=23.11 Aligned_cols=34 Identities=15% Similarity=0.262 Sum_probs=28.2
Q ss_pred EEEEEeC---CCccHHHHHHHHHHhCCceEEEEEEee
Q 017268 264 ELELCTE---DRVGLLSDITRIFRENSLSIKRAEIST 297 (374)
Q Consensus 264 vieV~~~---DRpGLL~~It~~L~~~~i~I~~a~i~T 297 (374)
.+.+.+. ++||+++++...|++.|+++......+
T Consensus 3 lisivg~~~~~~~~~~~~i~~~L~~~~i~v~~i~~~~ 39 (66)
T cd04916 3 LIMVVGEGMKNTVGVSARATAALAKAGINIRMINQGS 39 (66)
T ss_pred EEEEEcCCCCCCccHHHHHHHHHHHCCCCEEEEEecC
Confidence 4666664 789999999999999999998886544
No 279
>PRK08526 threonine dehydratase; Provisional
Probab=61.78 E-value=62 Score=32.75 Aligned_cols=70 Identities=16% Similarity=0.282 Sum_probs=48.2
Q ss_pred cCCCCeEEEEEEeCCccchHHHHHHHHHhcCCeEEEEEEEeeCC----eeEEEEEEecCCCCCCCCCHHHHHHHHHHHHH
Q 017268 44 MPTEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHND----RAAAVVHVTDHSTGYAIKDPKRLSTIKELLFN 119 (374)
Q Consensus 44 ~~~~~~~~I~I~~~DrpGL~a~I~~vL~~~glnI~~A~I~T~~~----~~~dvf~V~~~~~g~~~~~~~~~~~l~~~L~~ 119 (374)
...+....+.+.-+|+||-|++++..+...|.||.+-.-..... +...+....+ ..+++..+.|.+.|.+
T Consensus 321 ~~~~r~~~~~~~~~d~pg~l~~~~~~~~~~~~~i~~~~~~r~~~~~~~~~~~~~~~~e------~~~~~~~~~~~~~l~~ 394 (403)
T PRK08526 321 IKSYRKMKLHVTLVDKPGALMGLTDILKEANANIVKIDYDRFSTKLDYGDAMISITLE------TKGKEHQEEIRKILTE 394 (403)
T ss_pred HhcCCEEEEEEEcCCCCCHHHHHHHHHccCCCcEEEEEEEeccCCCCCccEEEEEEEE------eCCHHHHHHHHHHHHH
Confidence 35677889999999999999999999999999999876644322 1122222222 1134566677777655
No 280
>PF02576 DUF150: Uncharacterised BCR, YhbC family COG0779; InterPro: IPR003728 The RimP protein facilitates maturation of the 30S ribsomal subunit, and is required for the efficient production of translationally competent ribosmomes [].; PDB: 1IB8_A.
Probab=61.68 E-value=46 Score=28.31 Aligned_cols=70 Identities=20% Similarity=0.244 Sum_probs=41.7
Q ss_pred HHHHHHhCCceEEEEEEEecCCeEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHHhhc--cCCceEEEEEeC--CCc
Q 017268 201 IVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRHVDGLPISSEAERERVIQCLEAAIERR--ASEGLELELCTE--DRV 273 (374)
Q Consensus 201 i~~~l~~~glnI~~A~i~T~~g~~~dvF~V~~~~g~~~~~~~~~~~L~~~L~~~L~~r--~~~~tvieV~~~--DRp 273 (374)
+..++..+|+.+.+..+...++...-..+|... +. ++- +.++++-+.+...|+.. .+..+.+||+++ |||
T Consensus 2 i~~~~~~~g~~l~~v~~~~~~~~~~l~V~id~~-~g-v~l-ddc~~~sr~i~~~LD~~d~i~~~y~LEVSSPG~~r~ 75 (141)
T PF02576_consen 2 IEPLLEELGLELVDVEVVKEGGNRILRVFIDKD-GG-VSL-DDCEKVSRAISALLDAEDPIPEDYTLEVSSPGIDRP 75 (141)
T ss_dssp HHHHH-S-SSEEEEEEEEEETTEEEEEEEEE-S-S----H-HHHHHHHHHHGGGTTTS----S-EEEEEE--SSSS-
T ss_pred cccchhhcCCEEEEEEEEECCCCEEEEEEEEeC-CC-CCH-HHHHHHHHHHHHHHccccccCcceEEEEeCCCCCCc
Confidence 456788999999999999988764444445443 33 443 47777777777777542 466899999987 444
No 281
>COG0779 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=61.43 E-value=90 Score=27.30 Aligned_cols=78 Identities=14% Similarity=0.112 Sum_probs=55.0
Q ss_pred cchHHHHHHHHHhCCceEEEEEEEecCC-eEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHHhhc--cCCceEEEEEeC-
Q 017268 195 PKLLFDIVCTLTDMQYVVFHGMVNTGRT-EAYQEFYIRHVDGLPISSEAERERVIQCLEAAIERR--ASEGLELELCTE- 270 (374)
Q Consensus 195 pGLl~~i~~~l~~~glnI~~A~i~T~~g-~~~dvF~V~~~~g~~~~~~~~~~~L~~~L~~~L~~r--~~~~tvieV~~~- 270 (374)
..+..-+-.++..+|+.+.+..+...+. .++-+ ++..+ |. ++- +.++++-+.+...|+.. .+..|.+||+++
T Consensus 8 ~~v~~liep~~~~lG~ELv~ve~~~~~~~~~lrI-~id~~-g~-v~l-ddC~~vSr~is~~LD~edpi~~~Y~LEVSSPG 83 (153)
T COG0779 8 EKVTELIEPVVESLGFELVDVEFVKEGRDSVLRI-YIDKE-GG-VTL-DDCADVSRAISALLDVEDPIEGAYFLEVSSPG 83 (153)
T ss_pred HHHHHHHHHhHhhcCcEEEEEEEEEcCCCcEEEE-EeCCC-CC-CCH-HHHHHHHHHHHHHhccCCcccccEEEEeeCCC
Confidence 3455667788999999999999999874 55544 35444 32 332 36788888888888643 356799999987
Q ss_pred -CCccHH
Q 017268 271 -DRVGLL 276 (374)
Q Consensus 271 -DRpGLL 276 (374)
|||=.-
T Consensus 84 ldRpL~~ 90 (153)
T COG0779 84 LDRPLKT 90 (153)
T ss_pred CCCCcCC
Confidence 777443
No 282
>TIGR02079 THD1 threonine dehydratase. This model represents threonine dehydratase, the first step in the pathway converting threonine into isoleucine. At least two other clades of biosynthetic threonine dehydratases have been characterized by models TIGR01124 and TIGR01127. Those sequences described by this model are exclusively found in species containg the rest of the isoleucine pathway and which are generally lacking in members of the those other two clades of threonine dehydratases. Members of this clade are also often gene clustered with other elements of the isoleucine pathway.
Probab=61.23 E-value=1.5e+02 Score=30.01 Aligned_cols=66 Identities=11% Similarity=0.060 Sum_probs=42.4
Q ss_pred CceEEEEEeCCCccHHHHHHHHHHhCCceEEEEEEe-ecCCeeeeEEEEEcCCCCCCChhHHHHHHHHHhh
Q 017268 261 EGLELELCTEDRVGLLSDITRIFRENSLSIKRAEIS-TIGGKVKDTFYVTDVTGNPVDPKIIDSIRRQIGH 330 (374)
Q Consensus 261 ~~tvieV~~~DRpGLL~~It~~L~~~~i~I~~a~i~-T~g~~~~D~Fyv~d~~g~~l~~~~~~~l~~~l~~ 330 (374)
+...+.+.-+||||-|.++++.+...+-||...+-. ..+.....++..-... ++++.+++.++|.+
T Consensus 324 r~~~~~v~ipdrPGaL~~~l~~i~~~~~NI~~~~y~~~~~~~~~~v~v~iE~~----~~~h~~~i~~~L~~ 390 (409)
T TIGR02079 324 LKHYFIVRFPQRPGALREFLNDVLGPNDDITRFEYTKKSNRETGPALIGIELN----DKEDFAGLLERMAA 390 (409)
T ss_pred CEEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEeeecCCCCeEEEEEEEEeC----CHHHHHHHHHHHHH
Confidence 457899999999999999999666676699866644 3332222333221221 13566777776654
No 283
>cd04892 ACT_AK-like_2 ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes the second of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). The exception in this group, is the inclusion of the first ACT domain of the bifunctional aspartokinase - homoserine dehydrogenase-like enzyme group (ACT_AKi-HSDH-ThrA-like_1) which includes the monofunctional, threonine-sensitive, aspartokinase found in Methanococcus jannaschii and other related archaeal species. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. AK is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of AK with different repressors an
Probab=61.21 E-value=19 Score=24.87 Aligned_cols=32 Identities=13% Similarity=0.141 Sum_probs=26.3
Q ss_pred EEEEEeC---CCccHHHHHHHHHHhCCceEEEEEE
Q 017268 264 ELELCTE---DRVGLLSDITRIFRENSLSIKRAEI 295 (374)
Q Consensus 264 vieV~~~---DRpGLL~~It~~L~~~~i~I~~a~i 295 (374)
.|++.+. +++|+++++.+.|++.++++.....
T Consensus 2 ~i~i~g~~~~~~~~~~~~i~~~l~~~~i~v~~i~~ 36 (65)
T cd04892 2 LVSVVGAGMRGTPGVAARIFSALAEAGINIIMISQ 36 (65)
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHCCCcEEEEEc
Confidence 4666554 8899999999999999999976653
No 284
>cd04892 ACT_AK-like_2 ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes the second of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). The exception in this group, is the inclusion of the first ACT domain of the bifunctional aspartokinase - homoserine dehydrogenase-like enzyme group (ACT_AKi-HSDH-ThrA-like_1) which includes the monofunctional, threonine-sensitive, aspartokinase found in Methanococcus jannaschii and other related archaeal species. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. AK is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of AK with different repressors an
Probab=60.77 E-value=51 Score=22.57 Aligned_cols=45 Identities=16% Similarity=0.286 Sum_probs=31.2
Q ss_pred EEEEEeC---CccchHHHHHHHHHhcCCeEEEEEEEeeCCeeEEEEEEec
Q 017268 51 SIEFTGT---DRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTD 97 (374)
Q Consensus 51 ~I~I~~~---DrpGL~a~I~~vL~~~glnI~~A~I~T~~~~~~dvf~V~~ 97 (374)
.|++.+. +.+|+.+++...|+.+++++..-.... ......|.|..
T Consensus 2 ~i~i~g~~~~~~~~~~~~i~~~l~~~~i~v~~i~~~~--~~~~i~~~v~~ 49 (65)
T cd04892 2 LVSVVGAGMRGTPGVAARIFSALAEAGINIIMISQGS--SEVNISFVVDE 49 (65)
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHCCCcEEEEEcCC--CceeEEEEEeH
Confidence 4667655 789999999999999999997543322 22334566643
No 285
>COG4492 PheB ACT domain-containing protein [General function prediction only]
Probab=60.18 E-value=38 Score=28.94 Aligned_cols=53 Identities=25% Similarity=0.320 Sum_probs=41.8
Q ss_pred cCCCCeEEEEEEeCCccchHHHHHHHHHhcCCeEEEEEEEe-eCCeeEEEEEEe
Q 017268 44 MPTEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWT-HNDRAAAVVHVT 96 (374)
Q Consensus 44 ~~~~~~~~I~I~~~DrpGL~a~I~~vL~~~glnI~~A~I~T-~~~~~~dvf~V~ 96 (374)
.-.+.-..+.+.-.||.|.|+++-.++++.+|||+.-+..- .+|++-....+.
T Consensus 67 m~k~ri~TL~l~ledr~G~LS~vLd~iA~~~~nvLTI~Q~ipl~g~Anvtlsi~ 120 (150)
T COG4492 67 MLKERIITLSLSLEDRVGILSDVLDVIAREEINVLTIHQTIPLQGRANVTLSID 120 (150)
T ss_pred cccceEEEEEEEEhhhhhhHHHHHHHHHHhCCcEEEEecccccCceeeEEEEEE
Confidence 44556677889999999999999999999999999887766 355555555553
No 286
>COG3978 Acetolactate synthase (isozyme II), small (regulatory) subunit [Function unknown]
Probab=60.00 E-value=80 Score=24.53 Aligned_cols=65 Identities=11% Similarity=0.127 Sum_probs=50.3
Q ss_pred eEEEEEEeCCccchHHHHHHHHHhcCCeEEEEEEEee--CCeeEEEEEEecCCCCCCCCCHHHHHHHHHHHHHHHc
Q 017268 49 HTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTH--NDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLR 122 (374)
Q Consensus 49 ~~~I~I~~~DrpGL~a~I~~vL~~~glnI~~A~I~T~--~~~~~dvf~V~~~~~g~~~~~~~~~~~l~~~L~~~L~ 122 (374)
.+.+.+.++++|+.+.++-++-...|..|-.-...+. ++.+-..|.|.. ..++ +.|...|+++.+
T Consensus 3 qyqldl~ar~~pe~leRVLrvtrhRGF~vcamnmt~~~da~~~nie~tV~s---~R~~------~lL~~QLeKl~D 69 (86)
T COG3978 3 QYQLDLSARFNPETLERVLRVTRHRGFRVCAMNMTAAVDAGNANIELTVDS---DRSV------DLLTSQLEKLYD 69 (86)
T ss_pred eEEEeeeccCChHHHHHHHHHhhhcCeEEEEeecccccccccceEEEEEcC---CCCh------HHHHHHHHHHcc
Confidence 4678999999999999999999999999998888774 556666777743 2332 567788887544
No 287
>cd04868 ACT_AK-like ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes each of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). Typically, AK consists of two ACT domains in a tandem repeat, but the second ACT domain is inserted within the first, resulting in, what is normally the terminal beta strand of ACT2, formed from a region N-terminal of ACT1. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Aspartokinase is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of aspartokinase with different repressors and allosteric inhibitors. Pairs of ACT domains are proposed to specifically bind am
Probab=57.80 E-value=20 Score=24.21 Aligned_cols=30 Identities=23% Similarity=0.413 Sum_probs=24.7
Q ss_pred EEEEEeCC---ccchHHHHHHHHHhcCCeEEEE
Q 017268 51 SIEFTGTD---RPGLFSEVCAVLADLHCNVVNA 80 (374)
Q Consensus 51 ~I~I~~~D---rpGL~a~I~~vL~~~glnI~~A 80 (374)
.|+|.+.+ .+|.++++..+|+.++++|..-
T Consensus 2 ~i~v~g~~~~~~~~~~~~i~~~l~~~~i~i~~i 34 (60)
T cd04868 2 KVSIVGVGMRGTPGVAAKIFSALAEAGINVDMI 34 (60)
T ss_pred EEEEECCCCCCCCCHHHHHHHHHHHCCCcEEEE
Confidence 35566555 7899999999999999999754
No 288
>cd04916 ACT_AKiii-YclM-BS_2 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. B. subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from B. subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=57.55 E-value=64 Score=22.67 Aligned_cols=44 Identities=18% Similarity=0.206 Sum_probs=31.1
Q ss_pred EEEEEeC---CccchHHHHHHHHHhcCCeEEEEEEEeeCCeeEEEEEEe
Q 017268 51 SIEFTGT---DRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVT 96 (374)
Q Consensus 51 ~I~I~~~---DrpGL~a~I~~vL~~~glnI~~A~I~T~~~~~~dvf~V~ 96 (374)
.|.++|. +.+|+.+++...|+..|+++.-....+ .+ ....|.|.
T Consensus 3 lisivg~~~~~~~~~~~~i~~~L~~~~i~v~~i~~~~-s~-~~isf~v~ 49 (66)
T cd04916 3 LIMVVGEGMKNTVGVSARATAALAKAGINIRMINQGS-SE-ISIMIGVH 49 (66)
T ss_pred EEEEEcCCCCCCccHHHHHHHHHHHCCCCEEEEEecC-cc-cEEEEEEe
Confidence 4667775 678999999999999999997554433 22 22345554
No 289
>TIGR02079 THD1 threonine dehydratase. This model represents threonine dehydratase, the first step in the pathway converting threonine into isoleucine. At least two other clades of biosynthetic threonine dehydratases have been characterized by models TIGR01124 and TIGR01127. Those sequences described by this model are exclusively found in species containg the rest of the isoleucine pathway and which are generally lacking in members of the those other two clades of threonine dehydratases. Members of this clade are also often gene clustered with other elements of the isoleucine pathway.
Probab=56.94 E-value=84 Score=31.84 Aligned_cols=69 Identities=12% Similarity=0.098 Sum_probs=45.2
Q ss_pred CCCCeEEEEEEeCCccchHHHHHHHHHhcCCeEEEEEEE-eeCCeeEEEEEEecCCCCCCCCCHHHHHHHHHHHHH
Q 017268 45 PTEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIW-THNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFN 119 (374)
Q Consensus 45 ~~~~~~~I~I~~~DrpGL~a~I~~vL~~~glnI~~A~I~-T~~~~~~dvf~V~~~~~g~~~~~~~~~~~l~~~L~~ 119 (374)
.++....+.+.-+||||=|.+++..+...+.||..-+-. ..+-....+....+ ..+++..+.|.+.|.+
T Consensus 321 ~~~r~~~~~v~ipdrPGaL~~~l~~i~~~~~NI~~~~y~~~~~~~~~~v~v~iE------~~~~~h~~~i~~~L~~ 390 (409)
T TIGR02079 321 YEGLKHYFIVRFPQRPGALREFLNDVLGPNDDITRFEYTKKSNRETGPALIGIE------LNDKEDFAGLLERMAA 390 (409)
T ss_pred hcCCEEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEeeecCCCCeEEEEEEEE------eCCHHHHHHHHHHHHH
Confidence 466778899999999999999999777788899955544 22222222322222 1123455677777766
No 290
>cd04935 ACT_AKiii-DAPDC_1 ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. This CD includes the first of two ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. Aspartokinase (AK) is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The lysA gene encodes the enzyme DAPDC, a pyridoxal-5'-phosphate (PLP)-dependent enzyme which catalyzes the final step in the lysine biosynthetic pathway converting meso-diaminopimelic acid (DAP) to l-lysine. Tandem ACT domains are positioned centrally with the AK catalytic domain N-terminal and the DAPDC domains C-terminal. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=56.76 E-value=80 Score=23.74 Aligned_cols=57 Identities=9% Similarity=-0.016 Sum_probs=36.4
Q ss_pred eCCCcchHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEEeCCCCCCCCHHHHHHHHHHHHH
Q 017268 191 SKDRPKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRHVDGLPISSEAERERVIQCLEA 253 (374)
Q Consensus 191 ~~DrpGLl~~i~~~l~~~glnI~~A~i~T~~g~~~dvF~V~~~~g~~~~~~~~~~~L~~~L~~ 253 (374)
.++.||+++++.++|+++|+||..-. + ++ .--.|.|.... ..+.+ +..++|.+.|.+
T Consensus 11 ~~~~~g~~~~IF~~La~~~I~vDmI~--~-s~-~~isftv~~~~-~~~~~-~~~~~l~~el~~ 67 (75)
T cd04935 11 MWQQVGFLADVFAPFKKHGVSVDLVS--T-SE-TNVTVSLDPDP-NGLDP-DVLDALLDDLNQ 67 (75)
T ss_pred CCCccCHHHHHHHHHHHcCCcEEEEE--e-CC-CEEEEEEeCcc-cccch-HHHHHHHHHHHh
Confidence 36789999999999999999998653 2 22 22345555432 11222 256666666654
No 291
>PF05088 Bac_GDH: Bacterial NAD-glutamate dehydrogenase
Probab=55.76 E-value=1.2e+02 Score=36.13 Aligned_cols=125 Identities=19% Similarity=0.183 Sum_probs=84.6
Q ss_pred CCCEEEEEc---CCCCEEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEec---CC--eEEEEEEEEeCCCCCCCCHH
Q 017268 171 SRPQVTVLN---IEKDYTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTG---RT--EAYQEFYIRHVDGLPISSEA 242 (374)
Q Consensus 171 ~~~~V~i~~---~~~~~t~v~V~~~DrpGLl~~i~~~l~~~glnI~~A~i~T~---~g--~~~dvF~V~~~~g~~~~~~~ 242 (374)
.+..+.+.. ...+.+.+.++.+.++..|+++.-+|..+|+.|.+..-+.. +| ..+..|.+..+.+.......
T Consensus 473 ~~~~~~l~~~~~~~~~~~~lkiy~~~~~~~Ls~vlPilenlGl~V~~e~~~~i~~~~~~~~~i~~F~l~~~~~~~~~~~~ 552 (1528)
T PF05088_consen 473 GPLAVDLYRPAGAGPGRLRLKIYHPGEPLPLSDVLPILENLGLRVIDERPYEIRRADGRRVWIHDFGLQYPDGDALDLDD 552 (1528)
T ss_pred CCceEEEeccCCCCCCeEEEEEEcCCCCcCHHHHHHHHHhCCCEEEEEecceeecCCCceEEEEEEEEecCCCccccHHH
Confidence 345566654 23467899999999999999999999999999999887663 22 56778999988777655566
Q ss_pred HHHHHHHHHHHHHhhccCC-c----eEEEEEeCCCccHHHHHHHHHHhCCceEEEEEE
Q 017268 243 ERERVIQCLEAAIERRASE-G----LELELCTEDRVGLLSDITRIFRENSLSIKRAEI 295 (374)
Q Consensus 243 ~~~~L~~~L~~~L~~r~~~-~----tvieV~~~DRpGLL~~It~~L~~~~i~I~~a~i 295 (374)
..+.+++++.....++... . ....=-+--..-||...++.|.+.|+......|
T Consensus 553 ~~~~~~~a~~~v~~g~~e~D~~n~Lvl~agL~wrev~lLRA~~~Yl~Q~~~~~s~~~i 610 (1528)
T PF05088_consen 553 IRERFEEAFEAVWNGRAENDGFNRLVLSAGLTWREVALLRAYARYLRQIGFPFSQEYI 610 (1528)
T ss_pred HHHHHHHHHHHHhcCCCCCChHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCCCCHHHH
Confidence 7778888887765444211 0 000111122345777777778777775443333
No 292
>PRK09224 threonine dehydratase; Reviewed
Probab=54.95 E-value=2.7e+02 Score=29.07 Aligned_cols=132 Identities=20% Similarity=0.233 Sum_probs=75.1
Q ss_pred CCCeEEEEEEeCCccchHHHHHHHHHhcCCeEEEEEEEeeCCeeEEEEEEecCCCCCCCCCHHHHHHHHHHHHHHHcCCC
Q 017268 46 TEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLRGYD 125 (374)
Q Consensus 46 ~~~~~~I~I~~~DrpGL~a~I~~vL~~~glnI~~A~I~T~~~~~~dvf~V~~~~~g~~~~~~~~~~~l~~~L~~~L~~~~ 125 (374)
.+....+.|.-|||||=|.+++.+|. +.||..-+-.-.+.....+|....- .+. ++..+.|.+.|.+ .|..
T Consensus 325 ~~re~~l~v~iPerPGaL~~f~~~l~--~~nItef~yr~~~~~~a~V~vgie~-~~~----~~~~~~i~~~L~~--~gy~ 395 (504)
T PRK09224 325 EQREALLAVTIPEEPGSFLKFCELLG--GRNVTEFNYRYADAKEAHIFVGVQL-SRG----QEERAEIIAQLRA--HGYP 395 (504)
T ss_pred cCCEEEEEEEeCCCCCHHHHHHHHhc--cCcEEEEEEEecCCCeEEEEEEEEe-CCh----hhHHHHHHHHHHH--cCCC
Confidence 44567889999999999999999999 6788765443333333444433331 111 1225677777776 3321
Q ss_pred cccccccccCCCCCCcchhhhhhhcccCchhhhhhhhccccCCCCCCCEEEEEcCCCCEEEEEEEeCCCcchHHHHHHHH
Q 017268 126 DFRKAKTSLSPPGIMNRERRLHQIMFDDRDYERVEKAVGRVEDKSSRPQVTVLNIEKDYTVITMRSKDRPKLLFDIVCTL 205 (374)
Q Consensus 126 ~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~t~v~V~~~DrpGLl~~i~~~l 205 (374)
. . .+. -... .+.|- +..-+ | ..+. ...-..+.+.-|.|||-|.+.+.+|
T Consensus 396 ~-~----~ls---~ne~-~k~h~-----r~~~g-----~------~~~~------~~~e~~~~~~fPerpGal~~Fl~~l 444 (504)
T PRK09224 396 V-V----DLS---DDEL-AKLHV-----RYMVG-----G------RPPK------PLDERLYRFEFPERPGALLKFLSTL 444 (504)
T ss_pred e-E----ECC---CCHH-HHHHH-----HhccC-----C------CCCC------CCceEEEEEeCCCCCCHHHHHHHhc
Confidence 1 0 011 0000 01110 00100 0 0111 1123457888999999999999977
Q ss_pred HhCCceEEEEEEE
Q 017268 206 TDMQYVVFHGMVN 218 (374)
Q Consensus 206 ~~~glnI~~A~i~ 218 (374)
. -+.||..-+=.
T Consensus 445 ~-~~~~It~f~Yr 456 (504)
T PRK09224 445 G-THWNISLFHYR 456 (504)
T ss_pred C-CCCeeEEEEEc
Confidence 6 77888877664
No 293
>COG2061 ACT-domain-containing protein, predicted allosteric regulator of homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=53.75 E-value=1.5e+02 Score=26.00 Aligned_cols=31 Identities=16% Similarity=0.320 Sum_probs=27.9
Q ss_pred EEEEEEEeCCCcchHHHHHHHHHhCCceEEE
Q 017268 184 YTVITMRSKDRPKLLFDIVCTLTDMQYVVFH 214 (374)
Q Consensus 184 ~t~v~V~~~DrpGLl~~i~~~l~~~glnI~~ 214 (374)
...+.|.-+|+||-|..+..=|+..|.||..
T Consensus 5 ritldIEL~D~PGQLl~vLqPls~~g~NiIt 35 (170)
T COG2061 5 RITLDIELKDKPGQLLKVLQPLSKTGANIIT 35 (170)
T ss_pred EEEEEEEecCCCcchhhhhcchhhcCccEEE
Confidence 4568899999999999999999999999874
No 294
>PRK08841 aspartate kinase; Validated
Probab=53.32 E-value=1e+02 Score=31.14 Aligned_cols=94 Identities=13% Similarity=0.230 Sum_probs=58.1
Q ss_pred CEEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHHhhccCCc
Q 017268 183 DYTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRHVDGLPISSEAERERVIQCLEAAIERRASEG 262 (374)
Q Consensus 183 ~~t~v~V~~~DrpGLl~~i~~~l~~~glnI~~A~i~T~~g~~~dvF~V~~~~g~~~~~~~~~~~L~~~L~~~L~~r~~~~ 262 (374)
+.+.|++.+ +.++++.+.|+++|+++..-. +....+ .|.|.. ...++++..+...+. ....-
T Consensus 257 ~~~~i~v~~----~~~~~i~~~l~~~~i~v~~i~--~~~~~~--~~~v~~---------~~~~~~~~~~~~~i~-~~~~~ 318 (392)
T PRK08841 257 DLALIEVES----ESLPSLTKQCQMLGIEVWNVI--EEADRA--QIVIKQ---------DACAKLKLVFDDKIR-NSESV 318 (392)
T ss_pred CeEEEEecc----chHHHHHHHHHHcCCCEEEEE--ecCCcE--EEEECH---------HHHHHHHHhCcccEE-EeCCE
Confidence 445566643 357899999999999887442 222111 244432 123333222111010 01234
Q ss_pred eEEEEEeCCCccHHHHHHHHHHhCCceEEEEE
Q 017268 263 LELELCTEDRVGLLSDITRIFRENSLSIKRAE 294 (374)
Q Consensus 263 tvieV~~~DRpGLL~~It~~L~~~~i~I~~a~ 294 (374)
.++.+.+...||+.+++.++|.+.||+|....
T Consensus 319 a~vsvVG~~~~gv~~~~~~aL~~~~I~i~~i~ 350 (392)
T PRK08841 319 SLLTLVGLEANGMVEHACNLLAQNGIDVRQCS 350 (392)
T ss_pred EEEEEECCCChHHHHHHHHHHHhCCCCEEEEE
Confidence 68999999999999999999999999995544
No 295
>cd04936 ACT_AKii-LysC-BS-like_2 ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains. This CD includes the C-terminal of the two ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis strain 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive AK isoenzymes. The B. subtilis strain 168 AKII is induced by methionine and repressed and inhibited by lysine. Although C. glutamicum is known to contain a single AK, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is feedback regu
Probab=52.39 E-value=33 Score=23.84 Aligned_cols=42 Identities=12% Similarity=0.268 Sum_probs=30.3
Q ss_pred EEEEe---CCCccHHHHHHHHHHhCCceEEEEEEeecCCeeeeEEEEEc
Q 017268 265 LELCT---EDRVGLLSDITRIFRENSLSIKRAEISTIGGKVKDTFYVTD 310 (374)
Q Consensus 265 ieV~~---~DRpGLL~~It~~L~~~~i~I~~a~i~T~g~~~~D~Fyv~d 310 (374)
|.|.+ .+.||++.++.+.|++.|+++.....+ + ..=.|.|.+
T Consensus 3 i~v~g~~~~~~~~~~~~i~~~L~~~~i~v~~i~~s--~--~~is~~v~~ 47 (63)
T cd04936 3 VSIVGAGMRSHPGVAAKMFEALAEAGINIEMISTS--E--IKISCLIDE 47 (63)
T ss_pred EEEECCCCCCCccHHHHHHHHHHHCCCcEEEEEcc--C--ceEEEEEeH
Confidence 55554 477999999999999999999777522 2 223466644
No 296
>PRK12483 threonine dehydratase; Reviewed
Probab=52.34 E-value=3.1e+02 Score=28.92 Aligned_cols=67 Identities=16% Similarity=0.216 Sum_probs=43.8
Q ss_pred CCCCeEEEEEEeCCccchHHHHHHHHHhcCCeEEEEEEEeeCCeeEEEEEEecCCCCCCCCCHHHH-HHHHHHHHH
Q 017268 45 PTEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRL-STIKELLFN 119 (374)
Q Consensus 45 ~~~~~~~I~I~~~DrpGL~a~I~~vL~~~glnI~~A~I~T~~~~~~dvf~V~~~~~g~~~~~~~~~-~~l~~~L~~ 119 (374)
..+....+.|.-+||||-|.+++.+|... ||.+-.-.....+...++...+- .+++.. +.|.+.|.+
T Consensus 341 ~~~r~~~~~v~~~d~pG~l~~~~~~l~~~--ni~~~~~~~~~~~~~~v~v~ie~------~~~~~~~~~i~~~l~~ 408 (521)
T PRK12483 341 GEQREAIIAVTIPEQPGSFKAFCAALGKR--QITEFNYRYADAREAHLFVGVQT------HPRHDPRAQLLASLRA 408 (521)
T ss_pred hcCCEEEEEEEeCCCCCHHHHHHHHhhhc--CeEEEEEEecCCCeeEEEEEEEe------CChhhhHHHHHHHHHH
Confidence 45677789999999999999999999988 88766554433333334333321 122333 566666665
No 297
>cd04923 ACT_AK-LysC-DapG-like_2 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains. This CD includes the C-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the second and fourth, of four, ACT domains present in cyanobacteria AK. Also included are the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (B. subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=52.20 E-value=33 Score=23.82 Aligned_cols=31 Identities=10% Similarity=0.295 Sum_probs=25.7
Q ss_pred EEEEEe---CCCccHHHHHHHHHHhCCceEEEEE
Q 017268 264 ELELCT---EDRVGLLSDITRIFRENSLSIKRAE 294 (374)
Q Consensus 264 vieV~~---~DRpGLL~~It~~L~~~~i~I~~a~ 294 (374)
.|.|.+ .+.||++.++...|++.|+++....
T Consensus 2 ~v~v~g~~~~~~~~~~~~i~~~L~~~~i~v~~i~ 35 (63)
T cd04923 2 KVSIVGAGMRSHPGVAAKMFKALAEAGINIEMIS 35 (63)
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEE
Confidence 355654 4779999999999999999997775
No 298
>PLN02550 threonine dehydratase
Probab=50.99 E-value=3.4e+02 Score=29.08 Aligned_cols=130 Identities=14% Similarity=0.245 Sum_probs=72.1
Q ss_pred CCCeEEEEEEeCCccchHHHHHHHHHhcCCeEEEEEEEeeCCeeEEEEEEecCCCCCCCCCHHHHHHHHHHHHHHHcCCC
Q 017268 46 TEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLRGYD 125 (374)
Q Consensus 46 ~~~~~~I~I~~~DrpGL~a~I~~vL~~~glnI~~A~I~T~~~~~~dvf~V~~~~~g~~~~~~~~~~~l~~~L~~~L~~~~ 125 (374)
......+.|.-+||||-|.+++.+|... ||.+-.-.-..-...-+++... ..+++..+.|.+.|.+ .|..
T Consensus 414 ~~r~~~~~v~ipd~pG~l~~~~~~l~~~--ni~~~~~~~~~~~~~~v~v~ie------~~~~~~~~~i~~~l~~--~g~~ 483 (591)
T PLN02550 414 RQQEAVLATFMPEEPGSFKRFCELVGPM--NITEFKYRYSSEKEALVLYSVG------VHTEQELQALKKRMES--AQLR 483 (591)
T ss_pred cCCEEEEEEEcCCCCCHHHHHHHHhhhh--cceEEEEEecCCCceEEEEEEE------eCCHHHHHHHHHHHHH--CCCC
Confidence 3445778999999999999999999986 7776554433222222332222 1133566777777776 3321
Q ss_pred cccccccccCCCCCCcch-hhhhhhcccCchhhhhhhhccccCCCCCCCEEEEEcCCCCEEEEEEEeCCCcchHHHHHHH
Q 017268 126 DFRKAKTSLSPPGIMNRE-RRLHQIMFDDRDYERVEKAVGRVEDKSSRPQVTVLNIEKDYTVITMRSKDRPKLLFDIVCT 204 (374)
Q Consensus 126 ~~~~~~~~l~~~~~~~~~-~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~t~v~V~~~DrpGLl~~i~~~ 204 (374)
. ..+.+ . ... .|++.+ .+ ....+ ..-..+.+.-|.|||-|.+++.+
T Consensus 484 ~-----~~l~~-~--~~~~~~LR~v-------~g------------~ra~~------~~E~l~~v~fPErpGAl~~Fl~~ 530 (591)
T PLN02550 484 T-----VNLTS-N--DLVKDHLRYL-------MG------------GRAIV------KDELLYRFVFPERPGALMKFLDA 530 (591)
T ss_pred e-----EeCCC-C--hHHhhhhhhe-------ec------------ccccc------CceEEEEEEecCcCCHHHHHHHh
Confidence 1 01210 0 000 112111 00 00111 12345778889999999999997
Q ss_pred HHhCCceEEEEEEEe
Q 017268 205 LTDMQYVVFHGMVNT 219 (374)
Q Consensus 205 l~~~glnI~~A~i~T 219 (374)
|.. ..||...+=..
T Consensus 531 lg~-~~nITeF~YR~ 544 (591)
T PLN02550 531 FSP-RWNISLFHYRG 544 (591)
T ss_pred hCC-CCceeeEEeec
Confidence 774 35665554443
No 299
>COG0527 LysC Aspartokinases [Amino acid transport and metabolism]
Probab=50.58 E-value=3e+02 Score=28.35 Aligned_cols=33 Identities=9% Similarity=0.186 Sum_probs=26.7
Q ss_pred EEEEEEEe---CCCcchHHHHHHHHHhCCceEEEEE
Q 017268 184 YTVITMRS---KDRPKLLFDIVCTLTDMQYVVFHGM 216 (374)
Q Consensus 184 ~t~v~V~~---~DrpGLl~~i~~~l~~~glnI~~A~ 216 (374)
.-.|.+++ +..||..+++..+|++.|+||....
T Consensus 383 ~a~vsiVG~gm~~~~gvaa~~f~aL~~~~ini~~is 418 (447)
T COG0527 383 LALVSIVGAGMRSNPGVAARIFQALAEENINIIMIS 418 (447)
T ss_pred eeEEEEEccccccCcCHHHHHHHHHHhCCCcEEEEE
Confidence 34455554 5789999999999999999998766
No 300
>cd04936 ACT_AKii-LysC-BS-like_2 ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains. This CD includes the C-terminal of the two ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis strain 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive AK isoenzymes. The B. subtilis strain 168 AKII is induced by methionine and repressed and inhibited by lysine. Although C. glutamicum is known to contain a single AK, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is feedback regu
Probab=50.10 E-value=82 Score=21.69 Aligned_cols=43 Identities=14% Similarity=0.298 Sum_probs=30.1
Q ss_pred EEEEEe---CCccchHHHHHHHHHhcCCeEEEEEEEeeCCeeEEEEEEec
Q 017268 51 SIEFTG---TDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTD 97 (374)
Q Consensus 51 ~I~I~~---~DrpGL~a~I~~vL~~~glnI~~A~I~T~~~~~~dvf~V~~ 97 (374)
.|++.+ ++.+|+++++.+.|+.+|+++.--. .. .....|.|.+
T Consensus 2 ~i~v~g~~~~~~~~~~~~i~~~L~~~~i~v~~i~---~s-~~~is~~v~~ 47 (63)
T cd04936 2 KVSIVGAGMRSHPGVAAKMFEALAEAGINIEMIS---TS-EIKISCLIDE 47 (63)
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHCCCcEEEEE---cc-CceEEEEEeH
Confidence 355654 4678999999999999999996544 22 2334566653
No 301
>cd04918 ACT_AK1-AT_2 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1). This CD includes the second of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine (SAM). This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. In its inactive state, Arabidopsis AK1 binds the effectors lysine and SAM (two molecules each) at the interface of two ACT1 domain subunits. The second ACT domain (ACT2), this CD, does not interact with an effector. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=49.31 E-value=97 Score=22.28 Aligned_cols=44 Identities=9% Similarity=0.139 Sum_probs=31.1
Q ss_pred EEEEEeC--CCccHHHHHHHHHHhCCceEEEEEEeecCCeeeeE-EEEEc
Q 017268 264 ELELCTE--DRVGLLSDITRIFRENSLSIKRAEISTIGGKVKDT-FYVTD 310 (374)
Q Consensus 264 vieV~~~--DRpGLL~~It~~L~~~~i~I~~a~i~T~g~~~~D~-Fyv~d 310 (374)
+|.|.+. ..+|++.++.++|++.|++|....-.+ ....+ |.|.+
T Consensus 3 ~VsvVG~~~~~~~~~~~i~~aL~~~~I~v~~i~~g~---s~~sis~~v~~ 49 (65)
T cd04918 3 IISLIGNVQRSSLILERAFHVLYTKGVNVQMISQGA---SKVNISLIVND 49 (65)
T ss_pred EEEEECCCCCCccHHHHHHHHHHHCCCCEEEEEecC---ccceEEEEEeH
Confidence 4555554 468999999999999999998776444 33343 55533
No 302
>PRK08639 threonine dehydratase; Validated
Probab=49.26 E-value=1.3e+02 Score=30.65 Aligned_cols=70 Identities=14% Similarity=0.144 Sum_probs=45.7
Q ss_pred cCCCCeEEEEEEeCCccchHHHHHHHHHhcCCeEEEEEEEe-eCCeeEEEEEEecCCCCCCCCCHHHHHHHHHHHHH
Q 017268 44 MPTEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWT-HNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFN 119 (374)
Q Consensus 44 ~~~~~~~~I~I~~~DrpGL~a~I~~vL~~~glnI~~A~I~T-~~~~~~dvf~V~~~~~g~~~~~~~~~~~l~~~L~~ 119 (374)
..++....+.+.-+||||-|.+++..+...+.||..-+-.- .+.....++...+ ..+++..++|.+.|.+
T Consensus 331 ~~~~r~~~~~v~ipdrPGaL~~~l~~i~~~~~NI~~~~~~~~~~~~~~~v~v~iE------~~~~~h~~~i~~~L~~ 401 (420)
T PRK08639 331 IYEGLKHYFIVNFPQRPGALREFLDDVLGPNDDITRFEYLKKNNRETGPVLVGIE------LKDAEDYDGLIERMEA 401 (420)
T ss_pred HhcCCEEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEEeecCCCCceEEEEEEE------eCCHHHHHHHHHHHHH
Confidence 35667788999999999999999997777777999765432 1211222222222 1133455777777776
No 303
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=49.11 E-value=26 Score=36.69 Aligned_cols=36 Identities=11% Similarity=-0.051 Sum_probs=32.8
Q ss_pred EEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecC
Q 017268 186 VITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGR 221 (374)
Q Consensus 186 ~v~V~~~DrpGLl~~i~~~l~~~glnI~~A~i~T~~ 221 (374)
.++|.|.||.|+..++...|..+++|+....|...+
T Consensus 2 rl~~~~~dr~g~~~~~l~~~~~~~~~~~~~e~~~~~ 37 (520)
T PRK10820 2 RLEVFCEDRLGLTRELLDLLVLRSIDLRGIEIDPIG 37 (520)
T ss_pred eEEEEeeccccHHHHHHHHHHhcCCCccEEEEcCCC
Confidence 478999999999999999999999999999996653
No 304
>PRK09084 aspartate kinase III; Validated
Probab=49.10 E-value=3.1e+02 Score=28.10 Aligned_cols=48 Identities=17% Similarity=0.246 Sum_probs=34.3
Q ss_pred CCCeEEEEEEeC---CccchHHHHHHHHHhcCCeEEEEEEEeeCCeeEEEEEEec
Q 017268 46 TEEHTSIEFTGT---DRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTD 97 (374)
Q Consensus 46 ~~~~~~I~I~~~---DrpGL~a~I~~vL~~~glnI~~A~I~T~~~~~~dvf~V~~ 97 (374)
..+...|+|.+. +.+|.++++..+|+.+|+||.--. + . .....|.|..
T Consensus 303 ~~~i~lItv~~~~~~~~~g~~a~if~~l~~~~I~Vd~I~--s-s-e~sIs~~i~~ 353 (448)
T PRK09084 303 RRNQTLLTLHSLNMLHARGFLAEVFGILARHKISVDLIT--T-S-EVSVSLTLDT 353 (448)
T ss_pred eCCEEEEEEecCCCCccccHHHHHHHHHHHcCCeEEEEe--c-c-CcEEEEEEec
Confidence 445566777654 688999999999999999998543 2 2 2345677754
No 305
>PRK14644 hypothetical protein; Provisional
Probab=48.84 E-value=1.7e+02 Score=24.96 Aligned_cols=78 Identities=8% Similarity=0.009 Sum_probs=52.9
Q ss_pred HHHHHhCCceEEEEEEEecCCeEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHHhh--ccCCceEEEEEeC--CCccHHH
Q 017268 202 VCTLTDMQYVVFHGMVNTGRTEAYQEFYIRHVDGLPISSEAERERVIQCLEAAIER--RASEGLELELCTE--DRVGLLS 277 (374)
Q Consensus 202 ~~~l~~~glnI~~A~i~T~~g~~~dvF~V~~~~g~~~~~~~~~~~L~~~L~~~L~~--r~~~~tvieV~~~--DRpGLL~ 277 (374)
..++..+|+.+.+......++..+-..+|... +=+.++.+-+.|...|+. ..+..+.+||+++ ||| |.
T Consensus 5 e~~~~~~g~el~dve~~~~~~~~~LrV~Idk~------~iddC~~vSr~is~~LD~~d~i~~~Y~LEVSSPGldRp--L~ 76 (136)
T PRK14644 5 EKLLEKFGNKINEIKIVKEDGDLFLEVILNSR------DLKDIEELTKEISDFIDNLSVEFDFDSLDISSPGFDMD--YE 76 (136)
T ss_pred hhhHHhcCCEEEEEEEEeCCCCEEEEEEECCC------CHHHHHHHHHHHHHHhccccCCCCCeEEEEECCCCCCC--CC
Confidence 35688999999999999876644434455322 124778888888888863 2466899999987 898 33
Q ss_pred HHHHHHHhCCc
Q 017268 278 DITRIFRENSL 288 (374)
Q Consensus 278 ~It~~L~~~~i 288 (374)
. ...-.-.|=
T Consensus 77 ~-~~f~r~~G~ 86 (136)
T PRK14644 77 T-DELENHIGE 86 (136)
T ss_pred H-HHHHHhCCC
Confidence 3 354444443
No 306
>cd04920 ACT_AKiii-DAPDC_2 ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC). This CD includes the second of two ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. Aspartokinase (AK) is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The lysA gene encodes the enzyme DAPDC, a pyridoxal-5'-phosphate (PLP)-dependent enzyme which catalyzes the final step in the lysine biosynthetic pathway converting meso-diaminopimelic acid (DAP) to l-lysine. Tandem ACT domains are positioned centrally with the AK catalytic domain N-terminal and the DAPDC domains C-terminal. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=48.71 E-value=99 Score=22.20 Aligned_cols=27 Identities=7% Similarity=0.150 Sum_probs=22.3
Q ss_pred EEEEEeC---CccchHHHHHHHHHhcCCeE
Q 017268 51 SIEFTGT---DRPGLFSEVCAVLADLHCNV 77 (374)
Q Consensus 51 ~I~I~~~---DrpGL~a~I~~vL~~~glnI 77 (374)
.|.+++. +.+|+++++..+|...|+++
T Consensus 2 ~VsvVG~g~~~~~gv~~~~~~~L~~~~i~~ 31 (63)
T cd04920 2 AVSLVGRGIRSLLHKLGPALEVFGKKPVHL 31 (63)
T ss_pred EEEEECCCcccCccHHHHHHHHHhcCCceE
Confidence 4677775 67999999999999987666
No 307
>PRK08639 threonine dehydratase; Validated
Probab=48.65 E-value=1.2e+02 Score=30.80 Aligned_cols=38 Identities=11% Similarity=-0.074 Sum_probs=31.3
Q ss_pred CCCEEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEE
Q 017268 181 EKDYTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVN 218 (374)
Q Consensus 181 ~~~~t~v~V~~~DrpGLl~~i~~~l~~~glnI~~A~i~ 218 (374)
......+.+.-+||||-|.+++..+...+.||...+-.
T Consensus 333 ~~r~~~~~v~ipdrPGaL~~~l~~i~~~~~NI~~~~~~ 370 (420)
T PRK08639 333 EGLKHYFIVNFPQRPGALREFLDDVLGPNDDITRFEYL 370 (420)
T ss_pred cCCEEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEEe
Confidence 45677899999999999999999777777799877544
No 308
>PLN02317 arogenate dehydratase
Probab=47.95 E-value=1.4e+02 Score=30.22 Aligned_cols=37 Identities=14% Similarity=0.127 Sum_probs=31.3
Q ss_pred EEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEec
Q 017268 184 YTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTG 220 (374)
Q Consensus 184 ~t~v~V~~~DrpGLl~~i~~~l~~~glnI~~A~i~T~ 220 (374)
.|.|.+..+|+||.|+++..+|+.+|+|+..-...-.
T Consensus 283 KTSivfsl~~~pG~L~k~L~~Fa~~~INLtkIESRP~ 319 (382)
T PLN02317 283 KTSIVFSLEEGPGVLFKALAVFALRDINLTKIESRPQ 319 (382)
T ss_pred cEEEEEEcCCCCchHHHHHHHHHHCCCCEEEEEeeec
Confidence 4667777799999999999999999999987776543
No 309
>cd04923 ACT_AK-LysC-DapG-like_2 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains. This CD includes the C-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the second and fourth, of four, ACT domains present in cyanobacteria AK. Also included are the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (B. subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=46.43 E-value=95 Score=21.35 Aligned_cols=31 Identities=19% Similarity=0.388 Sum_probs=24.9
Q ss_pred EEEEEe---CCccchHHHHHHHHHhcCCeEEEEE
Q 017268 51 SIEFTG---TDRPGLFSEVCAVLADLHCNVVNAE 81 (374)
Q Consensus 51 ~I~I~~---~DrpGL~a~I~~vL~~~glnI~~A~ 81 (374)
.|++.+ ++.+|+++++...|+.+|+++..-.
T Consensus 2 ~v~v~g~~~~~~~~~~~~i~~~L~~~~i~v~~i~ 35 (63)
T cd04923 2 KVSIVGAGMRSHPGVAAKMFKALAEAGINIEMIS 35 (63)
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEE
Confidence 356664 4679999999999999999996543
No 310
>PRK11898 prephenate dehydratase; Provisional
Probab=46.13 E-value=1.2e+02 Score=29.11 Aligned_cols=49 Identities=10% Similarity=0.033 Sum_probs=35.2
Q ss_pred EEEEEEEeCC-CcchHHHHHHHHHhCCceEEEEEEEec-CCeEEEEEEEEe
Q 017268 184 YTVITMRSKD-RPKLLFDIVCTLTDMQYVVFHGMVNTG-RTEAYQEFYIRH 232 (374)
Q Consensus 184 ~t~v~V~~~D-rpGLl~~i~~~l~~~glnI~~A~i~T~-~g~~~dvF~V~~ 232 (374)
.+.+.+..++ +||-|+++...|+.+|+|+..-...-. ++...-.|+|.-
T Consensus 196 ktslif~l~~~~pGsL~~~L~~F~~~~INLt~IeSRP~~~~~~~y~F~vd~ 246 (283)
T PRK11898 196 KTSLVLTLPNNLPGALYKALSEFAWRGINLTRIESRPTKTGLGTYFFFIDV 246 (283)
T ss_pred eEEEEEEeCCCCccHHHHHHHHHHHCCCCeeeEecccCCCCCccEEEEEEE
Confidence 4555556555 699999999999999999987776643 333334566654
No 311
>PRK14635 hypothetical protein; Provisional
Probab=43.73 E-value=2.3e+02 Score=24.90 Aligned_cols=96 Identities=16% Similarity=0.173 Sum_probs=60.0
Q ss_pred CCCcchHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEEeCCC--CCCCCHHHHHHHHHHHHHHHhhc-cCCceEEEEE
Q 017268 192 KDRPKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRHVDG--LPISSEAERERVIQCLEAAIERR-ASEGLELELC 268 (374)
Q Consensus 192 ~DrpGLl~~i~~~l~~~glnI~~A~i~T~~g~~~dvF~V~~~~g--~~~~~~~~~~~L~~~L~~~L~~r-~~~~tvieV~ 268 (374)
++..-+-..+..++. .|+.+.+..+...++...-..+|...++ ..++- +.++.+-+.+...|+.. ....|.+||+
T Consensus 3 ~~~~~i~~l~~~~~~-~g~el~dve~~~~~~~~~lrV~ID~~~~~~~gv~l-ddC~~vSr~is~~LD~~d~~~~Y~LEVS 80 (162)
T PRK14635 3 VSEEEISEILDRVLA-LPVKLYSLKVNQRPNHSLIEVVLDNLEHPYGSVSL-LECEQVSRKLKEELERISPDLDFTLKVS 80 (162)
T ss_pred CcHHHHHHHHHHHHC-CCCEEEEEEEEecCCCcEEEEEEecCCCCCCCcCH-HHHHHHHHHHHHHhCCCCCCCCeEEEEc
Confidence 334444555566664 6999999999988766444555643211 12332 47888888888888642 2357999999
Q ss_pred eC--CCccHHHHHHHHHHhCCceEE
Q 017268 269 TE--DRVGLLSDITRIFRENSLSIK 291 (374)
Q Consensus 269 ~~--DRpGLL~~It~~L~~~~i~I~ 291 (374)
++ ||| |..--..-.-.|-.+.
T Consensus 81 SPGldRp--L~~~~~~~r~~G~~v~ 103 (162)
T PRK14635 81 SAGAERK--LRLPEDLDRFRGIPVR 103 (162)
T ss_pred CCCCCCc--CCCHHHHHHhCCCEEE
Confidence 87 555 5555555555555443
No 312
>cd04918 ACT_AK1-AT_2 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1). This CD includes the second of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine (SAM). This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. In its inactive state, Arabidopsis AK1 binds the effectors lysine and SAM (two molecules each) at the interface of two ACT1 domain subunits. The second ACT domain (ACT2), this CD, does not interact with an effector. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=40.88 E-value=1.3e+02 Score=21.51 Aligned_cols=34 Identities=12% Similarity=-0.042 Sum_probs=26.1
Q ss_pred EEEEeC--CCcchHHHHHHHHHhCCceEEEEEEEec
Q 017268 187 ITMRSK--DRPKLLFDIVCTLTDMQYVVFHGMVNTG 220 (374)
Q Consensus 187 v~V~~~--DrpGLl~~i~~~l~~~glnI~~A~i~T~ 220 (374)
|.+.+. ..+|++.++..+|++.|++|......+.
T Consensus 4 VsvVG~~~~~~~~~~~i~~aL~~~~I~v~~i~~g~s 39 (65)
T cd04918 4 ISLIGNVQRSSLILERAFHVLYTKGVNVQMISQGAS 39 (65)
T ss_pred EEEECCCCCCccHHHHHHHHHHHCCCCEEEEEecCc
Confidence 455553 4689999999999999999976555444
No 313
>TIGR01270 Trp_5_monoox tryptophan 5-monooxygenase, tetrameric. This model describes tryptophan 5-monooxygenase, a member of the family of tetrameric, biopterin-dependent aromatic amino acid hydroxylases found in metazoans. It is closely related to tetrameric phenylalanine-4-hydroxylase and tyrosine 3-monooxygenase, and more distantly related to the monomeric phenylalanine-4-hydroxylase found in some Gram-negative bacteria.
Probab=39.56 E-value=64 Score=33.31 Aligned_cols=51 Identities=8% Similarity=0.048 Sum_probs=37.3
Q ss_pred CCEEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCC-eEE-EEEEEEe
Q 017268 182 KDYTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGRT-EAY-QEFYIRH 232 (374)
Q Consensus 182 ~~~t~v~V~~~DrpGLl~~i~~~l~~~glnI~~A~i~T~~g-~~~-dvF~V~~ 232 (374)
...+.|-+..+|+||-|+++..+|+.+|+|+..-...-..+ ... -.|+|.-
T Consensus 29 ~~ktSLIFsL~d~pGaL~~vL~vFa~~gINLThIESRPsk~~~~e~Y~FfVD~ 81 (464)
T TIGR01270 29 VQRLSIIFSLSNVVGDLSKAIAIFQDRHINILHLESRDSKDGTSKTMDVLVDV 81 (464)
T ss_pred CceEEEEEECCCCchHHHHHHHHHHHCCCCEEEEECCcCCCCCCccEEEEEEE
Confidence 34566777779999999999999999999998766654332 222 3466654
No 314
>TIGR01268 Phe4hydrox_tetr phenylalanine-4-hydroxylase, tetrameric form. The member of this family from Drosophila has been described as having both phenylalanine-4-hydroxylase and tryptophan 5-monoxygenase activity (PubMed:1371286). However, a Drosophila member of the tryptophan 5-monoxygenase clade has subsequently been discovered.
Probab=39.43 E-value=1.7e+02 Score=30.15 Aligned_cols=49 Identities=16% Similarity=0.181 Sum_probs=36.4
Q ss_pred eEEEEEEeCCccchHHHHHHHHHhcCCeEEEEEEEee-CCeeEEEEEEec
Q 017268 49 HTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTH-NDRAAAVVHVTD 97 (374)
Q Consensus 49 ~~~I~I~~~DrpGL~a~I~~vL~~~glnI~~A~I~T~-~~~~~dvf~V~~ 97 (374)
.+.|.+..+|+||-|+++-.+|+.+|+|+..-.-.-. .....-.|+|.-
T Consensus 16 KTSLiFsL~d~pGaL~~vL~vFa~~gINLthIESRPsk~~~~eY~FFVD~ 65 (436)
T TIGR01268 16 KTSLIFSLKEEAGALAETLKLFQAHDVNLTHIESRPSKTHPGEYEFFVEF 65 (436)
T ss_pred eEEEEEEcCCCCcHHHHHHHHHHHCCCCeeEEecccCCCCCccEEEEEEE
Confidence 5778888899999999999999999999974333332 223344677764
No 315
>TIGR01124 ilvA_2Cterm threonine ammonia-lyase, biosynthetic, long form. Forms scoring between the trusted and noise cutoff tend to branch with this subgroup of threonine ammonia-lyase phylogenetically but have only a single copy of the C-terminal domain.
Probab=39.37 E-value=2.1e+02 Score=29.84 Aligned_cols=66 Identities=17% Similarity=0.323 Sum_probs=44.1
Q ss_pred CCCeEEEEEEeCCccchHHHHHHHHHhcCCeEEEEEEEeeCCeeEEEEEEecCCCCCCCCCHHHHHHHHHHHHH
Q 017268 46 TEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFN 119 (374)
Q Consensus 46 ~~~~~~I~I~~~DrpGL~a~I~~vL~~~glnI~~A~I~T~~~~~~dvf~V~~~~~g~~~~~~~~~~~l~~~L~~ 119 (374)
.+....+.|.-|||||=|.+++.++.. .||..-+-.-.+....-+|+... ..+++..+.|.+.|.+
T Consensus 322 ~~re~~l~V~iPerPGal~~f~~~i~~--~nItef~yr~~~~~~a~v~vgie------~~~~~~~~~l~~~L~~ 387 (499)
T TIGR01124 322 EQREALLAVTIPEQPGSFLKFCELLGN--RNITEFNYRYADRKDAHIFVGVQ------LSNPQERQEILARLND 387 (499)
T ss_pred cCCEEEEEEEeCCCCCHHHHHHHHhhh--cceEEEEEEecCCCeEEEEEEEE------eCCHHHHHHHHHHHHH
Confidence 456678899999999999999999997 57765554433333344444333 1133566777777776
No 316
>cd04915 ACT_AK-Ectoine_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway found in Methylomicrobium alcaliphilum, Vibrio cholerae, and various other halotolerant or halophilic bacteria. Bacteria exposed to hyperosmotic stress accumulate organic solutes called 'compatible solutes' of which ectoine, a heterocyclic amino acid, is one. Apart from its osmotic function, ectoine also exhibits a protective effect on proteins, nucleic acids and membranes against a variety of stress factors. de novo synthesis of ectoine starts with the phosphorylation of L-aspartate and shares its first two enzymatic steps with the biosynthesis of amino acids of the aspartate family: aspartokinas
Probab=38.64 E-value=1.5e+02 Score=21.45 Aligned_cols=44 Identities=18% Similarity=0.144 Sum_probs=30.1
Q ss_pred EEEEEeC--CCccHHHHHHHHHHhCCceEEEEEEeecCCeeee-EEEEEc
Q 017268 264 ELELCTE--DRVGLLSDITRIFRENSLSIKRAEISTIGGKVKD-TFYVTD 310 (374)
Q Consensus 264 vieV~~~--DRpGLL~~It~~L~~~~i~I~~a~i~T~g~~~~D-~Fyv~d 310 (374)
+|.|.+. -+||++.++.++|.+.|+++...... ..... .|.|.+
T Consensus 4 ~VsvVG~gm~~~gv~~ki~~~L~~~~I~v~~i~~~---~s~~~is~~V~~ 50 (66)
T cd04915 4 IVSVIGRDLSTPGVLARGLAALAEAGIEPIAAHQS---MRNVDVQFVVDR 50 (66)
T ss_pred EEEEECCCCCcchHHHHHHHHHHHCCCCEEEEEec---CCeeEEEEEEEH
Confidence 4555443 36899999999999999999876633 33333 355643
No 317
>PRK14641 hypothetical protein; Provisional
Probab=38.53 E-value=2.4e+02 Score=25.20 Aligned_cols=77 Identities=10% Similarity=0.037 Sum_probs=49.6
Q ss_pred HhCCceEEEEEEEecCCeEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHHhhc--c----CCceEEEEEeC--CCccHHH
Q 017268 206 TDMQYVVFHGMVNTGRTEAYQEFYIRHVDGLPISSEAERERVIQCLEAAIERR--A----SEGLELELCTE--DRVGLLS 277 (374)
Q Consensus 206 ~~~glnI~~A~i~T~~g~~~dvF~V~~~~g~~~~~~~~~~~L~~~L~~~L~~r--~----~~~tvieV~~~--DRpGLL~ 277 (374)
..+|+.+.+..+...++...-..+|....| ++- +.++.+-+.|...|+.. . ...|.+||+++ ||| |.
T Consensus 20 ~~~G~eLvdve~~~~~~~~~lrV~ID~~~g--v~l-DdC~~vSr~Is~~LD~~d~i~~~~~~~Y~LEVSSPGldRp--L~ 94 (173)
T PRK14641 20 KGEGVYLVSMTVKGSGKGRKIEVLLDADTG--IRI-DQCAFFSRRIRERLEEDEELLGLVGEDFDLMVSSPGLGEP--II 94 (173)
T ss_pred ccCCeEEEEEEEEeCCCCcEEEEEEeCCCC--CCH-HHHHHHHHHHHHHhCcccccccCCCCCeEEEEeCCCCCCc--CC
Confidence 488999999999887653333444543333 332 47888888888888643 2 25799999987 555 44
Q ss_pred HHHHHHHhCC
Q 017268 278 DITRIFRENS 287 (374)
Q Consensus 278 ~It~~L~~~~ 287 (374)
..-..-.-.|
T Consensus 95 ~~~~f~r~~G 104 (173)
T PRK14641 95 LPRQYGRHVG 104 (173)
T ss_pred CHHHHHHhCC
Confidence 4444444444
No 318
>cd04911 ACT_AKiii-YclM-BS_1 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Bacillus subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from Bacillus subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=37.74 E-value=1e+02 Score=23.62 Aligned_cols=53 Identities=17% Similarity=0.198 Sum_probs=33.2
Q ss_pred CCccHHHHHHHHHHhCCceEEEEEEeecCCeeeeEEEEEcCCCCCCChhHHHHHHHHHhh
Q 017268 271 DRVGLLSDITRIFRENSLSIKRAEISTIGGKVKDTFYVTDVTGNPVDPKIIDSIRRQIGH 330 (374)
Q Consensus 271 DRpGLL~~It~~L~~~~i~I~~a~i~T~g~~~~D~Fyv~d~~g~~l~~~~~~~l~~~l~~ 330 (374)
-..|++.++.++|.++|+++++.- ...|.|-|.-. ...++++..+++.++|..
T Consensus 13 ~evGF~rk~L~I~E~~~is~Eh~P------SGID~~Siii~-~~~~~~~~~~~i~~~i~~ 65 (76)
T cd04911 13 REVGFGRKLLSILEDNGISYEHMP------SGIDDISIIIR-DNQLTDEKEQKILAEIKE 65 (76)
T ss_pred chhcHHHHHHHHHHHcCCCEeeec------CCCccEEEEEE-ccccchhhHHHHHHHHHH
Confidence 457999999999999999999764 23444544332 333433344444444443
No 319
>PRK00907 hypothetical protein; Provisional
Probab=37.36 E-value=2.1e+02 Score=22.73 Aligned_cols=63 Identities=14% Similarity=0.172 Sum_probs=44.6
Q ss_pred EEEEEEeCCccchHHHHHHHHHhcCCeEEEEEEEe---eCCeeE-EEEEEecCCCCCCCCCHHHHHHHHHHHHH
Q 017268 50 TSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWT---HNDRAA-AVVHVTDHSTGYAIKDPKRLSTIKELLFN 119 (374)
Q Consensus 50 ~~I~I~~~DrpGL~a~I~~vL~~~glnI~~A~I~T---~~~~~~-dvf~V~~~~~g~~~~~~~~~~~l~~~L~~ 119 (374)
+-+.|.|.+.++|...|..++..+.-.....++.. .+|.+. ..+.|... +.++++.|=++|.+
T Consensus 18 fpiKVmG~a~~~l~~~V~~vv~~h~p~~~~~~i~~r~Ss~GkY~Svtv~i~at-------s~eQld~iY~~L~~ 84 (92)
T PRK00907 18 FELSAMGTAERGLETELPRLLAATGVELLQERISWKHSSSGKYVSVRIGFRAE-------SREQYDAAHQALRD 84 (92)
T ss_pred CeEEEEEcCchhHHHHHHHHHHHhCCCCCcCcEEeccCCCCEEEEEEEEEEEC-------CHHHHHHHHHHHhh
Confidence 67999999999999999999999988777777754 345554 45555531 22455555555543
No 320
>cd04933 ACT_AK1-AT_1 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1). This CD includes the first of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine. This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. Like the Escherichia coli AKIII (LysC), Arabidopsis AK1 binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. A loop in common is involved in the binding of both Lys and S-adenosylmethionine providing an explanation for the synergistic inhibition by these effectors. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=37.36 E-value=33 Score=26.33 Aligned_cols=38 Identities=11% Similarity=0.196 Sum_probs=28.3
Q ss_pred eCCccchHHHHHHHHHhcCCeEEEEEEEeeCCeeEEEEEEec
Q 017268 56 GTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTD 97 (374)
Q Consensus 56 ~~DrpGL~a~I~~vL~~~glnI~~A~I~T~~~~~~dvf~V~~ 97 (374)
.++.||..++|..+|+.+|+||.-- +.++ ....|.|..
T Consensus 11 ~~~~~g~~a~IF~~La~~~InVDmI---~qs~-~sISftV~~ 48 (78)
T cd04933 11 MLGQYGFLAKVFSIFETLGISVDVV---ATSE-VSISLTLDP 48 (78)
T ss_pred CCCccCHHHHHHHHHHHcCCcEEEE---EecC-CEEEEEEEh
Confidence 3678999999999999999999743 2233 345677754
No 321
>cd04921 ACT_AKi-HSDH-ThrA-like_1 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). This CD includes the first of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pat
Probab=36.12 E-value=1.8e+02 Score=21.44 Aligned_cols=45 Identities=22% Similarity=0.276 Sum_probs=30.6
Q ss_pred EEEEEEeC---CccchHHHHHHHHHhcCCeEEEEEEEeeCCeeEEEEEEe
Q 017268 50 TSIEFTGT---DRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVT 96 (374)
Q Consensus 50 ~~I~I~~~---DrpGL~a~I~~vL~~~glnI~~A~I~T~~~~~~dvf~V~ 96 (374)
..|++++. +.+|+.+++..+|+.+|+++.--...+.+ ....|.+.
T Consensus 2 ~~I~vvg~~~~~~~~~~~~i~~~L~~~~I~v~~i~~~~~~--~~isf~v~ 49 (80)
T cd04921 2 ALINIEGTGMVGVPGIAARIFSALARAGINVILISQASSE--HSISFVVD 49 (80)
T ss_pred EEEEEEcCCCCCCccHHHHHHHHHHHCCCcEEEEEecCCc--ceEEEEEe
Confidence 35667543 67899999999999999999755433222 22345554
No 322
>cd04914 ACT_AKi-DapG-BS_1 ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI. This CD includes the N-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) strain 168), Clostridia, and Actinobacteria, bacterial species. In B. subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive aspartokinase isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The B. subtilis AKI is tetrameric consisting of two alpha and
Probab=35.36 E-value=87 Score=22.89 Aligned_cols=43 Identities=12% Similarity=0.228 Sum_probs=30.2
Q ss_pred EEEEEeC-CCccHHHHHHHHHHhCCceEEEEEEeecCCeeeeEEEEEc
Q 017268 264 ELELCTE-DRVGLLSDITRIFRENSLSIKRAEISTIGGKVKDTFYVTD 310 (374)
Q Consensus 264 vieV~~~-DRpGLL~~It~~L~~~~i~I~~a~i~T~g~~~~D~Fyv~d 310 (374)
.+.|.+. +.||.+++|.+.|++.|++|...... . + .=.|.+..
T Consensus 3 ~vtv~~~~~~~~~~a~if~~La~~~InvDmI~~~-~-~--~isFtv~~ 46 (67)
T cd04914 3 QIKVKAKDNENDLQQRVFKALANAGISVDLINVS-P-E--EVIFTVDG 46 (67)
T ss_pred EEEEecCCCCccHHHHHHHHHHHcCCcEEEEEec-C-C--CEEEEEch
Confidence 3445433 56999999999999999999999333 2 2 34566633
No 323
>cd04914 ACT_AKi-DapG-BS_1 ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI. This CD includes the N-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) strain 168), Clostridia, and Actinobacteria, bacterial species. In B. subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive aspartokinase isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The B. subtilis AKI is tetrameric consisting of two alpha and
Probab=34.39 E-value=69 Score=23.44 Aligned_cols=42 Identities=17% Similarity=0.190 Sum_probs=29.5
Q ss_pred EEEEEeC-CccchHHHHHHHHHhcCCeEEEEEEEeeCCeeEEEEEEe
Q 017268 51 SIEFTGT-DRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVT 96 (374)
Q Consensus 51 ~I~I~~~-DrpGL~a~I~~vL~~~glnI~~A~I~T~~~~~~dvf~V~ 96 (374)
.|+|.+. +.||..++|.+.|+.+|+||---... .+ ...|.|.
T Consensus 3 ~vtv~~~~~~~~~~a~if~~La~~~InvDmI~~~--~~--~isFtv~ 45 (67)
T cd04914 3 QIKVKAKDNENDLQQRVFKALANAGISVDLINVS--PE--EVIFTVD 45 (67)
T ss_pred EEEEecCCCCccHHHHHHHHHHHcCCcEEEEEec--CC--CEEEEEc
Confidence 4555544 56999999999999999999855221 22 3457664
No 324
>PRK08841 aspartate kinase; Validated
Probab=34.10 E-value=2.2e+02 Score=28.73 Aligned_cols=64 Identities=13% Similarity=0.285 Sum_probs=44.7
Q ss_pred CCCeEEEEEEeCCccchHHHHHHHHHhcCCeEEEEEEEeeCCeeEEEEEEecCCCCCCCCCHHHHHHHHHHHHHHHcC
Q 017268 46 TEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLRG 123 (374)
Q Consensus 46 ~~~~~~I~I~~~DrpGL~a~I~~vL~~~glnI~~A~I~T~~~~~~dvf~V~~~~~g~~~~~~~~~~~l~~~L~~~L~~ 123 (374)
..+...|.+++...||+.+++..+|...|+||+.-. .++ ....|.|.. +..++.-+.|++.+..
T Consensus 315 ~~~~a~vsvVG~~~~gv~~~~~~aL~~~~I~i~~i~---~s~-~~is~vv~~----------~~~~~av~~lH~~f~~ 378 (392)
T PRK08841 315 SESVSLLTLVGLEANGMVEHACNLLAQNGIDVRQCS---TEP-QSSMLVLDP----------ANVDRAANILHKTYVT 378 (392)
T ss_pred eCCEEEEEEECCCChHHHHHHHHHHHhCCCCEEEEE---CCC-cEEEEEEeH----------HHHHHHHHHHHHHHcC
Confidence 356778999999999999999999999999995332 232 334455532 2234555667776643
No 325
>PRK00907 hypothetical protein; Provisional
Probab=33.63 E-value=2e+02 Score=22.85 Aligned_cols=63 Identities=10% Similarity=0.013 Sum_probs=45.8
Q ss_pred EEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEe----cCCeEEEEEEEEeCCCCCCCCHHHHHHHHHHHHH
Q 017268 185 TVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNT----GRTEAYQEFYIRHVDGLPISSEAERERVIQCLEA 253 (374)
Q Consensus 185 t~v~V~~~DrpGLl~~i~~~l~~~glnI~~A~i~T----~~g~~~dvF~V~~~~g~~~~~~~~~~~L~~~L~~ 253 (374)
+-+.|.|.+.+++...|..++..+.-......+.. .|.+..-++.|.-. ..++++.|-+.|..
T Consensus 18 fpiKVmG~a~~~l~~~V~~vv~~h~p~~~~~~i~~r~Ss~GkY~Svtv~i~at------s~eQld~iY~~L~~ 84 (92)
T PRK00907 18 FELSAMGTAERGLETELPRLLAATGVELLQERISWKHSSSGKYVSVRIGFRAE------SREQYDAAHQALRD 84 (92)
T ss_pred CeEEEEEcCchhHHHHHHHHHHHhCCCCCcCcEEeccCCCCEEEEEEEEEEEC------CHHHHHHHHHHHhh
Confidence 66999999999999999999999988776666643 24455555555542 23577777777754
No 326
>PTZ00324 glutamate dehydrogenase 2; Provisional
Probab=33.36 E-value=2.8e+02 Score=31.60 Aligned_cols=78 Identities=13% Similarity=0.005 Sum_probs=53.2
Q ss_pred CCEEEEEc-C-CCCEEEEEE---EeCCCcchHHHHHHHHHhCCceEEEEEEEec-CCeEEEEEEEEeCCCCCCCCHHHHH
Q 017268 172 RPQVTVLN-I-EKDYTVITM---RSKDRPKLLFDIVCTLTDMQYVVFHGMVNTG-RTEAYQEFYIRHVDGLPISSEAERE 245 (374)
Q Consensus 172 ~~~V~i~~-~-~~~~t~v~V---~~~DrpGLl~~i~~~l~~~glnI~~A~i~T~-~g~~~dvF~V~~~~g~~~~~~~~~~ 245 (374)
.|.+.+.. . +.....+.+ .-+...|+|..++.++..+|+.+.++.+.+. +|-.+-+|||....+......+.++
T Consensus 216 g~~i~~~~~~~~~~~~r~~~a~~r~~~~~~~~s~~~~~~~~~~l~~~R~Y~e~fsngv~i~s~yv~~~~~~~~~~~~~~~ 295 (1002)
T PTZ00324 216 GPVLHVNEVPRGGVSFTMAMAFRRRYYTASFFSRFGEIVTFHGAYSMSKYVEPFSNGVQVYTFFIRGLTADDNPDLSIED 295 (1002)
T ss_pred CCeEEEEecCCCCcEEEEEEEEecCCcHhhHHHHHHHHHHhcCCccceEEEEEeeCCcEEEEEEEecCCCCCcccccHHH
Confidence 46666666 4 323334444 3355669999999999999999999999996 6767779999976554322223444
Q ss_pred HHHH
Q 017268 246 RVIQ 249 (374)
Q Consensus 246 ~L~~ 249 (374)
.+++
T Consensus 296 ~~~~ 299 (1002)
T PTZ00324 296 RASL 299 (1002)
T ss_pred HHHh
Confidence 4444
No 327
>cd04890 ACT_AK-like_1 ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes the first of two ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids, lysine, threonine, methionine, and isoleucine. This CD, includes the first ACT domain of the Escherichia coli (EC) isoenzyme, AKIII (LysC) and the Arabidopsis isoenzyme, asparate kinase 1, both enzymes monofunctional and involved in lysine synthesis, as well as the the first ACT domain of Bacillus subtilis (BS) isoenzyme, AKIII (YclM), and of the Saccharomyces cerevisiae AK (Hom3). Also included are the first ACT domains of the Methylomicrobium alcaliphilum AK, the first enzyme of the ectoine biosynthetic pathway. Members of this CD bel
Probab=32.84 E-value=50 Score=23.25 Aligned_cols=37 Identities=11% Similarity=0.221 Sum_probs=27.5
Q ss_pred CCccchHHHHHHHHHhcCCeEEEEEEEeeCCeeEEEEEEec
Q 017268 57 TDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTD 97 (374)
Q Consensus 57 ~DrpGL~a~I~~vL~~~glnI~~A~I~T~~~~~~dvf~V~~ 97 (374)
.+++|+.+++..+|+.+|+|+.-- ++++ ....|.|..
T Consensus 11 ~~~~~~~~~if~~l~~~~i~v~~i---~t~~-~~is~~v~~ 47 (62)
T cd04890 11 NGEVGFLRKIFEILEKHGISVDLI---PTSE-NSVTLYLDD 47 (62)
T ss_pred CcccCHHHHHHHHHHHcCCeEEEE---ecCC-CEEEEEEeh
Confidence 467899999999999999999844 3333 335677754
No 328
>cd04915 ACT_AK-Ectoine_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway found in Methylomicrobium alcaliphilum, Vibrio cholerae, and various other halotolerant or halophilic bacteria. Bacteria exposed to hyperosmotic stress accumulate organic solutes called 'compatible solutes' of which ectoine, a heterocyclic amino acid, is one. Apart from its osmotic function, ectoine also exhibits a protective effect on proteins, nucleic acids and membranes against a variety of stress factors. de novo synthesis of ectoine starts with the phosphorylation of L-aspartate and shares its first two enzymatic steps with the biosynthesis of amino acids of the aspartate family: aspartokinas
Probab=31.78 E-value=2e+02 Score=20.80 Aligned_cols=46 Identities=20% Similarity=0.234 Sum_probs=30.8
Q ss_pred EEEEEEeCC--ccchHHHHHHHHHhcCCeEEEEEEEeeCCeeEEEEEEec
Q 017268 50 TSIEFTGTD--RPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTD 97 (374)
Q Consensus 50 ~~I~I~~~D--rpGL~a~I~~vL~~~glnI~~A~I~T~~~~~~dvf~V~~ 97 (374)
..|.+++.. ++|+.+++..+|...|++++.-... .......|.|.+
T Consensus 3 a~VsvVG~gm~~~gv~~ki~~~L~~~~I~v~~i~~~--~s~~~is~~V~~ 50 (66)
T cd04915 3 AIVSVIGRDLSTPGVLARGLAALAEAGIEPIAAHQS--MRNVDVQFVVDR 50 (66)
T ss_pred EEEEEECCCCCcchHHHHHHHHHHHCCCCEEEEEec--CCeeEEEEEEEH
Confidence 456777653 6899999999999999999743322 222334455643
No 329
>PF04083 Abhydro_lipase: Partial alpha/beta-hydrolase lipase region; InterPro: IPR006693 The alpha/beta hydrolase fold is common to several hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is similar: an alpha/beta sheet, not barrel, of eight beta-sheets connected by alpha-helices []. This entry represents the N-terminal part of an alpha/beta hydrolase domain found in a number of lipases.; GO: 0006629 lipid metabolic process; PDB: 1K8Q_B 1HLG_B.
Probab=30.53 E-value=1.5e+02 Score=21.67 Aligned_cols=33 Identities=12% Similarity=-0.107 Sum_probs=24.5
Q ss_pred HHHHHhCCceEEEEEEEecCCeEEEEEEEEeCC
Q 017268 202 VCTLTDMQYVVFHGMVNTGRTEAYQEFYIRHVD 234 (374)
Q Consensus 202 ~~~l~~~glnI~~A~i~T~~g~~~dvF~V~~~~ 234 (374)
......+|..+..=.+.|.||+++..+.|..+.
T Consensus 2 ~~~i~~~GY~~E~h~V~T~DGYiL~l~RIp~~~ 34 (63)
T PF04083_consen 2 PELIEKHGYPCEEHEVTTEDGYILTLHRIPPGK 34 (63)
T ss_dssp HHHHHHTT---EEEEEE-TTSEEEEEEEE-SBT
T ss_pred HHHHHHcCCCcEEEEEEeCCCcEEEEEEccCCC
Confidence 456788999999999999999999999998764
No 330
>PRK09466 metL bifunctional aspartate kinase II/homoserine dehydrogenase II; Provisional
Probab=30.24 E-value=8.1e+02 Score=27.36 Aligned_cols=32 Identities=9% Similarity=0.123 Sum_probs=26.6
Q ss_pred CEEEEEEEe---CCCcchHHHHHHHHHhCCceEEE
Q 017268 183 DYTVITMRS---KDRPKLLFDIVCTLTDMQYVVFH 214 (374)
Q Consensus 183 ~~t~v~V~~---~DrpGLl~~i~~~l~~~glnI~~ 214 (374)
+...|.+++ ..++|+..++..+|.+.|+++..
T Consensus 390 ~~a~VsvVG~gm~~~~gv~~~~f~aL~~~~I~ii~ 424 (810)
T PRK09466 390 GLALVALVGAGVTRNPLHCHRFYQQLKDQPVEFIW 424 (810)
T ss_pred CeEEEEEeCCCcccCccHHHHHHHHHHhCCCcEEE
Confidence 456678877 46899999999999999999853
No 331
>cd07247 SgaA_N_like N-terminal domain of Streptomyces griseus SgaA (suppression of growth disturbance caused by A-factor at a high concentration under high osmolality during early growth phase), and similar domains. SgaA suppresses the growth disturbances caused by high osmolarity and a high concentration of A-factor, a microbial hormone, during the early growth phase in Streptomyces griseus. A-factor (2-isocapryloyl-3R-hydroxymethyl-gamma-butyrolactone) controls morphological differentiation and secondary metabolism in Streptomyces griseus. It is a chemical signaling molecule that at a very low concentration acts as a switch for yellow pigment production, aerial mycelium formation, streptomycin production, and streptomycin resistance. The structure and amino acid sequence of SgaA are closely related to a group of antibiotics resistance proteins, including bleomycin resistance protein, mitomycin resistance protein, and fosfomycin resistance proteins. SgaA might also function as a strep
Probab=28.43 E-value=2.2e+02 Score=21.96 Aligned_cols=50 Identities=6% Similarity=-0.073 Sum_probs=35.7
Q ss_pred CEEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEEeCCCCCC
Q 017268 183 DYTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRHVDGLPI 238 (374)
Q Consensus 183 ~~t~v~V~~~DrpGLl~~i~~~l~~~glnI~~A~i~T~~g~~~dvF~V~~~~g~~~ 238 (374)
....+.+.+.| +..+...|.+.|+++........++. ..|++.||+|..+
T Consensus 61 ~~~~~~f~v~d----i~~~~~~l~~~g~~~~~~~~~~~~~~--~~~~~~DPdG~~~ 110 (114)
T cd07247 61 PGWLVYFAVDD----VDAAAARVEAAGGKVLVPPTDIPGVG--RFAVFADPEGAVF 110 (114)
T ss_pred CeEEEEEEeCC----HHHHHHHHHHCCCEEEeCCcccCCcE--EEEEEECCCCCEE
Confidence 45567777888 66777888899999886644333222 4799999999754
No 332
>PRK14642 hypothetical protein; Provisional
Probab=28.34 E-value=4.6e+02 Score=23.91 Aligned_cols=86 Identities=19% Similarity=0.083 Sum_probs=53.1
Q ss_pred hHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEEeCC-----------CCCCCCHHHHHHHHHHHHHHHhhccCCceEE
Q 017268 197 LLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRHVD-----------GLPISSEAERERVIQCLEAAIERRASEGLEL 265 (374)
Q Consensus 197 Ll~~i~~~l~~~glnI~~A~i~T~~g~~~dvF~V~~~~-----------g~~~~~~~~~~~L~~~L~~~L~~r~~~~tvi 265 (374)
|-..+..++..+|+.+.+..+.. ++ .+ ..+|..++ +..++- +-++.+-+.|...|+..-...+.+
T Consensus 3 l~~liepvv~~lG~eLvdve~~~-~~-~L-rV~ID~~~~~~~~~~~~~~~~gVti-dDC~~vSR~Is~~LDve~~~y~~L 78 (197)
T PRK14642 3 LQQIVEQTVTGLGYDLVEIERSA-GG-LL-RVTIDLPWVPPTEGAPVGPEQFVTV-EDCEKVTRQLQFALEVDGVDYKRL 78 (197)
T ss_pred HHHHHHHHHHHcCCEEEEEEEec-CC-EE-EEEEecCccccccccccccCCCccH-HHHHHHHHHHHHHhcccCccccEE
Confidence 44556788999999999999764 33 33 33444332 122332 467888888888887433334489
Q ss_pred EEEeC--CCccHHHHHHHHHHhCCc
Q 017268 266 ELCTE--DRVGLLSDITRIFRENSL 288 (374)
Q Consensus 266 eV~~~--DRpGLL~~It~~L~~~~i 288 (374)
||+++ ||| |...-....-.|=
T Consensus 79 EVSSPGldRP--Lk~~~df~rfiG~ 101 (197)
T PRK14642 79 EVSSPGIDRP--LRHEQDFERFAGE 101 (197)
T ss_pred EEeCCCCCCC--CCCHHHHHHhCCC
Confidence 99987 555 4444444444443
No 333
>cd04920 ACT_AKiii-DAPDC_2 ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC). This CD includes the second of two ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. Aspartokinase (AK) is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The lysA gene encodes the enzyme DAPDC, a pyridoxal-5'-phosphate (PLP)-dependent enzyme which catalyzes the final step in the lysine biosynthetic pathway converting meso-diaminopimelic acid (DAP) to l-lysine. Tandem ACT domains are positioned centrally with the AK catalytic domain N-terminal and the DAPDC domains C-terminal. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=27.65 E-value=2.3e+02 Score=20.20 Aligned_cols=27 Identities=4% Similarity=-0.026 Sum_probs=21.6
Q ss_pred EEEEEeC---CCcchHHHHHHHHHhCCceE
Q 017268 186 VITMRSK---DRPKLLFDIVCTLTDMQYVV 212 (374)
Q Consensus 186 ~v~V~~~---DrpGLl~~i~~~l~~~glnI 212 (374)
.|.+.+. +.||+++++.++|.+.++++
T Consensus 2 ~VsvVG~g~~~~~gv~~~~~~~L~~~~i~~ 31 (63)
T cd04920 2 AVSLVGRGIRSLLHKLGPALEVFGKKPVHL 31 (63)
T ss_pred EEEEECCCcccCccHHHHHHHHHhcCCceE
Confidence 3566664 78999999999999987666
No 334
>PRK14637 hypothetical protein; Provisional
Probab=27.06 E-value=4.1e+02 Score=23.00 Aligned_cols=61 Identities=18% Similarity=0.317 Sum_probs=45.4
Q ss_pred ccchHHHHHHHHHhcCCeEEEEEEEeeCCeeEEEEEEecCCCCCCCCCHHHHHHHHHHHHHHHcC
Q 017268 59 RPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLRG 123 (374)
Q Consensus 59 rpGL~a~I~~vL~~~glnI~~A~I~T~~~~~~dvf~V~~~~~g~~~~~~~~~~~l~~~L~~~L~~ 123 (374)
--|-+..+..++..+|+.+.+......++......+|.. ..| + +-+.++.+-+.|..+|..
T Consensus 7 ~~~~~~~v~p~~~~~g~eLvdve~~~~~~~~~lrV~ID~-~~g--V-~iddC~~vSr~Is~~LD~ 67 (151)
T PRK14637 7 DLGYFSECEPVVEGLGCKLVDLSRRVQQAQGRVRAVIYS-AGG--V-GLDDCARVHRILVPRLEA 67 (151)
T ss_pred cccHHHHHHHHHHhcCCEEEEEEEEecCCCcEEEEEEEC-CCC--C-CHHHHHHHHHHHHHHhcc
Confidence 357889999999999999999999987765555444543 234 3 336788888888887753
No 335
>cd04910 ACT_AK-Ectoine_1 ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway found in Methylomicrobium alcaliphilum, Vibrio cholerae, and various other halotolerant or halophilic bacteria. Bacteria exposed to hyperosmotic stress accumulate organic solutes called 'compatible solutes' of which ectoine, a heterocyclic amino acid, is one. Apart from its osmotic function, ectoine also exhibits a protective effect on proteins, nucleic acids and membranes against a variety of stress factors. de novo synthesis of ectoine starts with the phosphorylation of L-aspartate and shares its first two enzymatic steps with the biosynthesis of amino acids of the aspartate family: aspartokinase
Probab=26.56 E-value=2.8e+02 Score=20.85 Aligned_cols=59 Identities=22% Similarity=0.290 Sum_probs=37.3
Q ss_pred EEEEEeCC---CccHHHHHHHHHHhCCceEEEEEEeecCCeeeeEEEEEcCCCCCCChhHHHHHHHHHhhhh
Q 017268 264 ELELCTED---RVGLLSDITRIFRENSLSIKRAEISTIGGKVKDTFYVTDVTGNPVDPKIIDSIRRQIGHTK 332 (374)
Q Consensus 264 vieV~~~D---RpGLL~~It~~L~~~~i~I~~a~i~T~g~~~~D~Fyv~d~~g~~l~~~~~~~l~~~l~~~~ 332 (374)
.|+|..+| .+|.-+.|.++|++++++|-.- .|-.+ .-+.|+... .+.++.+.++|++..
T Consensus 3 alevfdqdMvG~~g~d~~i~~~l~~~~v~ii~K--~~nAN--tit~yl~~~------~k~~~r~~~~Le~~~ 64 (71)
T cd04910 3 ALEVFDQDMVGEVGYDLEILELLQRFKVSIIAK--DTNAN--TITHYLAGS------LKTIKRLTEDLENRF 64 (71)
T ss_pred EEEEeCCCccCChhHHHHHHHHHHHcCCeEEEE--ecCCC--eEEEEEEcC------HHHHHHHHHHHHHhC
Confidence 35666554 4788899999999999999765 32222 334566433 234555666665544
No 336
>PRK02047 hypothetical protein; Provisional
Probab=24.72 E-value=3.5e+02 Score=21.28 Aligned_cols=48 Identities=13% Similarity=0.130 Sum_probs=37.4
Q ss_pred eEEEEEEeCCccchHHHHHHHHHhcCCeEEEEEEEee---CCeeE-EEEEEe
Q 017268 49 HTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTH---NDRAA-AVVHVT 96 (374)
Q Consensus 49 ~~~I~I~~~DrpGL~a~I~~vL~~~glnI~~A~I~T~---~~~~~-dvf~V~ 96 (374)
.+.+.|++++.+++...|..++..+...+..+.+.+. +|.+. ..+.|.
T Consensus 16 ~~~~KvIG~~~~~~~~~v~~iv~~~~~~~~~~~i~~k~Ss~GkY~Svtv~v~ 67 (91)
T PRK02047 16 DFPIKVMGKAHPEFADTIFKVVSVHDPEFDLEKIEERPSSGGNYTGLTITVR 67 (91)
T ss_pred CCeEEEEEeCcHhHHHHHHHHHHHhCCCCccCceEEccCCCCeEEEEEEEEE
Confidence 3789999999999999999999999888878887662 44544 344444
No 337
>cd07247 SgaA_N_like N-terminal domain of Streptomyces griseus SgaA (suppression of growth disturbance caused by A-factor at a high concentration under high osmolality during early growth phase), and similar domains. SgaA suppresses the growth disturbances caused by high osmolarity and a high concentration of A-factor, a microbial hormone, during the early growth phase in Streptomyces griseus. A-factor (2-isocapryloyl-3R-hydroxymethyl-gamma-butyrolactone) controls morphological differentiation and secondary metabolism in Streptomyces griseus. It is a chemical signaling molecule that at a very low concentration acts as a switch for yellow pigment production, aerial mycelium formation, streptomycin production, and streptomycin resistance. The structure and amino acid sequence of SgaA are closely related to a group of antibiotics resistance proteins, including bleomycin resistance protein, mitomycin resistance protein, and fosfomycin resistance proteins. SgaA might also function as a strep
Probab=24.44 E-value=2.3e+02 Score=21.89 Aligned_cols=49 Identities=10% Similarity=0.051 Sum_probs=35.3
Q ss_pred ceEEEEEeCCCccHHHHHHHHHHhCCceEEEEEEeecCCeeeeEEEEEcCCCCCC
Q 017268 262 GLELELCTEDRVGLLSDITRIFRENSLSIKRAEISTIGGKVKDTFYVTDVTGNPV 316 (374)
Q Consensus 262 ~tvieV~~~DRpGLL~~It~~L~~~~i~I~~a~i~T~g~~~~D~Fyv~d~~g~~l 316 (374)
...+.+...| +....+.|.+.|+++........+. ...||+.|++|..+
T Consensus 62 ~~~~~f~v~d----i~~~~~~l~~~g~~~~~~~~~~~~~--~~~~~~~DPdG~~~ 110 (114)
T cd07247 62 GWLVYFAVDD----VDAAAARVEAAGGKVLVPPTDIPGV--GRFAVFADPEGAVF 110 (114)
T ss_pred eEEEEEEeCC----HHHHHHHHHHCCCEEEeCCcccCCc--EEEEEEECCCCCEE
Confidence 4567777777 6778888999999987654332212 25899999999865
No 338
>PRK02001 hypothetical protein; Validated
Probab=23.63 E-value=4.9e+02 Score=22.62 Aligned_cols=77 Identities=13% Similarity=0.130 Sum_probs=48.3
Q ss_pred HHHHHhCCceEEEEEEEecCCeEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEeC--CCccHHHHH
Q 017268 202 VCTLTDMQYVVFHGMVNTGRTEAYQEFYIRHVDGLPISSEAERERVIQCLEAAIERRASEGLELELCTE--DRVGLLSDI 279 (374)
Q Consensus 202 ~~~l~~~glnI~~A~i~T~~g~~~dvF~V~~~~g~~~~~~~~~~~L~~~L~~~L~~r~~~~tvieV~~~--DRpGLL~~I 279 (374)
..++..+|+.+.+..+... ..+-+ +|....| ++- +.++.+-+.|...|+.. ...|.+||++| ||| |..-
T Consensus 12 e~~~~~~g~eLvdv~~~~~--~~lrV-~ID~~~G--v~l-ddC~~vSr~is~~LD~~-d~~Y~LEVSSPGldRp--L~~~ 82 (152)
T PRK02001 12 EELLEGPELFLVDLTISPD--NKIVV-EIDGDEG--VWI-EDCVELSRAIEHNLDRE-EEDFELEVGSAGLTSP--LKVP 82 (152)
T ss_pred HhhhhhcCcEEEEEEEEcC--CEEEE-EEECCCC--CCH-HHHHHHHHHHHHHhcCC-CCCeEEEEeCCCCCCc--CCCH
Confidence 3456788999999888743 22333 3443333 332 47888888888888643 46799999987 555 3333
Q ss_pred HHHHHhCC
Q 017268 280 TRIFRENS 287 (374)
Q Consensus 280 t~~L~~~~ 287 (374)
-..-.-.|
T Consensus 83 ~~f~r~~G 90 (152)
T PRK02001 83 RQYKKNIG 90 (152)
T ss_pred HHHHHhCC
Confidence 34444444
No 339
>cd04917 ACT_AKiii-LysC-EC_2 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The E. coli AKIII (LysC) binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. The second ACT domain (ACT2), this CD, is not involved in the binding of heterotrophic effectors. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=23.18 E-value=2.8e+02 Score=19.55 Aligned_cols=24 Identities=17% Similarity=0.447 Sum_probs=19.2
Q ss_pred EEEEEeC---CccchHHHHHHHHHhcC
Q 017268 51 SIEFTGT---DRPGLFSEVCAVLADLH 74 (374)
Q Consensus 51 ~I~I~~~---DrpGL~a~I~~vL~~~g 74 (374)
.|.++|. ++||+++++..+|...+
T Consensus 3 lIsvvG~~~~~~~~v~~~i~~~L~~i~ 29 (64)
T cd04917 3 LVALIGNDISETAGVEKRIFDALEDIN 29 (64)
T ss_pred EEEEECCCccCCcCHHHHHHHHHHhCC
Confidence 5677776 68999999999997633
No 340
>KOG0456 consensus Aspartate kinase [Amino acid transport and metabolism]
Probab=23.08 E-value=5.2e+02 Score=26.42 Aligned_cols=138 Identities=12% Similarity=0.193 Sum_probs=67.9
Q ss_pred CEEEEEEEeC---CCcchHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHH--Hhh
Q 017268 183 DYTVITMRSK---DRPKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRHVDGLPISSEAERERVIQCLEAA--IER 257 (374)
Q Consensus 183 ~~t~v~V~~~---DrpGLl~~i~~~l~~~glnI~~A~i~T~~g~~~dvF~V~~~~g~~~~~~~~~~~L~~~L~~~--L~~ 257 (374)
+-+.+.|... -..|.|+++-.+|.+.|+.+-- |.|..-.+.-.++..+.+++.+.. ..+.+..+.|+.. ++
T Consensus 392 nv~mldI~Str~l~q~GFLAkvFti~ek~~isVDv--vaTSEV~iSltL~~~~~~sreliq-~~l~~a~eeL~ki~~vd- 467 (559)
T KOG0456|consen 392 NVTMLDIASTRMLGQHGFLAKVFTIFEKLGISVDV--VATSEVSISLTLDPSKLDSRELIQ-GELDQAVEELEKIAVVD- 467 (559)
T ss_pred cEEEEEecccchhhhhhHHHHHHHHHHHhCcEEEE--EEeeeEEEEEecChhhhhhHHHHH-hhHHHHHHHHHHhhhhh-
Confidence 3444555432 3569999999999999998742 222222222222222222111100 0111111222111 00
Q ss_pred ccCCceEEEEEe--CCCccHHHHHHHHHHhCCceEEEEEEeecCCeeeeEEEEEcCCCCCCChhHHHHHHHHHhh
Q 017268 258 RASEGLELELCT--EDRVGLLSDITRIFRENSLSIKRAEISTIGGKVKDTFYVTDVTGNPVDPKIIDSIRRQIGH 330 (374)
Q Consensus 258 r~~~~tvieV~~--~DRpGLL~~It~~L~~~~i~I~~a~i~T~g~~~~D~Fyv~d~~g~~l~~~~~~~l~~~l~~ 330 (374)
-.....+|.+.+ ....|++-+...+|++.||||+... .|..-.+.=.|-|. +-..+.++.|..+|.+
T Consensus 468 ll~~~sIiSLiGnvq~ss~i~~rmF~~l~e~giNvqMIS---QGAskvNIS~ivne---~ea~k~v~~lH~~~~e 536 (559)
T KOG0456|consen 468 LLKGRSIISLIGNVQNSSGILERMFCVLAENGINVQMIS---QGASKVNISCIVNE---KEAEKCVQALHKAFFE 536 (559)
T ss_pred hhccchHHhhhhhhhhhhHHHHHHHHHHHhcCcceeeec---cccccceEEEEECh---HHHHHHHHHHHHHHcC
Confidence 001123344433 3556999999999999999999865 55544443333332 1112345566666654
No 341
>cd04934 ACT_AK-Hom3_1 CT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydro
Probab=22.85 E-value=76 Score=23.81 Aligned_cols=53 Identities=15% Similarity=0.136 Sum_probs=34.6
Q ss_pred CccchHHHHHHHHHhcCCeEEEEEEEeeCCeeEEEEEEecCCCCCCCCCHHHHHHHHHHHHH
Q 017268 58 DRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFN 119 (374)
Q Consensus 58 DrpGL~a~I~~vL~~~glnI~~A~I~T~~~~~~dvf~V~~~~~g~~~~~~~~~~~l~~~L~~ 119 (374)
-.+|++++|.++|+.+|+||.-- .+ ++ ....|.|.. .. ..+ +.++.|.+.|.+
T Consensus 13 ~~~g~~~~If~~la~~~I~vd~I--~~-s~-~~isftv~~---~~-~~~-~~l~~l~~el~~ 65 (73)
T cd04934 13 LSHGFLARIFAILDKYRLSVDLI--ST-SE-VHVSMALHM---EN-AED-TNLDAAVKDLQK 65 (73)
T ss_pred cccCHHHHHHHHHHHcCCcEEEE--Ee-CC-CEEEEEEeh---hh-cCh-HHHHHHHHHHHH
Confidence 45899999999999999999743 22 33 334566653 12 212 255667777766
No 342
>cd04907 ACT_ThrD-I_2 Second of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the second of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=22.25 E-value=3.6e+02 Score=20.56 Aligned_cols=61 Identities=11% Similarity=0.131 Sum_probs=39.2
Q ss_pred EEEEEeCCCccHHHHHHHHHHhCCceEEEEEEeecCCeeeeEEEEEcCCCCCCChhHHHHHHHHHhh
Q 017268 264 ELELCTEDRVGLLSDITRIFRENSLSIKRAEISTIGGKVKDTFYVTDVTGNPVDPKIIDSIRRQIGH 330 (374)
Q Consensus 264 vieV~~~DRpGLL~~It~~L~~~~i~I~~a~i~T~g~~~~D~Fyv~d~~g~~l~~~~~~~l~~~l~~ 330 (374)
.+.|.-+.|||-|.+.++.|. -+.+|...+=.-.|+....+|.--.. .+...+++.+.|.+
T Consensus 3 ~~~v~iPErpGal~~Fl~~l~-p~~~ITeF~YR~~~~~~a~vlvGi~~-----~~~~~~~l~~~l~~ 63 (81)
T cd04907 3 LFRFEFPERPGALKKFLNELL-PKWNITLFHYRNQGSDYGRVLVGIQV-----PDADLDELKERLDA 63 (81)
T ss_pred EEEEEcCCCCCHHHHHHHHhC-CCCeEeEEEEecCCCCceeEEEEEEe-----ChHHHHHHHHHHHH
Confidence 567889999999999999994 36788777755455555556543222 11245555555543
No 343
>PRK08961 bifunctional aspartate kinase/diaminopimelate decarboxylase protein; Provisional
Probab=21.99 E-value=1.1e+03 Score=26.28 Aligned_cols=34 Identities=9% Similarity=0.118 Sum_probs=26.3
Q ss_pred CCCeEEEEEEe---CCccchHHHHHHHHHhcCCeEEE
Q 017268 46 TEEHTSIEFTG---TDRPGLFSEVCAVLADLHCNVVN 79 (374)
Q Consensus 46 ~~~~~~I~I~~---~DrpGL~a~I~~vL~~~glnI~~ 79 (374)
..+.+.|+|.+ .+.+|.+++|..+|+.+|+||.-
T Consensus 319 ~~~v~lItv~~~~~~~~~g~~a~if~~la~~~I~Vd~ 355 (861)
T PRK08961 319 KNGIVLVSMETIGMWQQVGFLADVFTLFKKHGLSVDL 355 (861)
T ss_pred ECCEEEEEEecCCccccccHHHHHHHHHHHcCCeEEE
Confidence 33455666643 36889999999999999999963
No 344
>PRK00092 ribosome maturation protein RimP; Reviewed
Probab=21.86 E-value=5.2e+02 Score=22.24 Aligned_cols=59 Identities=15% Similarity=0.168 Sum_probs=43.4
Q ss_pred chHHHHHHHHHhcCCeEEEEEEEeeCCeeEEEEEEecCCCCCCCCCHHHHHHHHHHHHHHHcC
Q 017268 61 GLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLRG 123 (374)
Q Consensus 61 GL~a~I~~vL~~~glnI~~A~I~T~~~~~~dvf~V~~~~~g~~~~~~~~~~~l~~~L~~~L~~ 123 (374)
-+-..+..++..+|+.+.+..+...++......+|.. .+|- +-+.++.+-+.+..+|+.
T Consensus 8 ~i~~~~~~~~~~~g~~l~dv~~~~~~~~~~l~V~Id~-~~gv---~iddc~~~Sr~is~~LD~ 66 (154)
T PRK00092 8 QLTELIEPVVEALGYELVDVEYVKEGRDSTLRIYIDK-EGGI---DLDDCEEVSRQISAVLDV 66 (154)
T ss_pred HHHHHHHHHHHHCCCEEEEEEEEecCCCcEEEEEEEC-CCCC---CHHHHHHHHHHHHHHhcc
Confidence 3556678899999999999999987665555555543 2343 347889999999888864
No 345
>PRK00341 hypothetical protein; Provisional
Probab=21.02 E-value=4.2e+02 Score=20.86 Aligned_cols=46 Identities=17% Similarity=0.227 Sum_probs=35.6
Q ss_pred EEEEEEeCCccchHHHHHHHHHhcCCeEEEEEEEe---eCCeeE-EEEEEe
Q 017268 50 TSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWT---HNDRAA-AVVHVT 96 (374)
Q Consensus 50 ~~I~I~~~DrpGL~a~I~~vL~~~glnI~~A~I~T---~~~~~~-dvf~V~ 96 (374)
+.+.|.|.+.+++-..|..++..+. ....+.+.+ .+|.+. ..+.|.
T Consensus 18 ~~~KViG~~~~~~~~~V~~iv~~~~-~~~~~~~~~k~Ss~GkY~S~tv~i~ 67 (91)
T PRK00341 18 YPIKVIGDTGVGFKDLVIEILQKHA-DVDLSTLAERQSSNGKYTTVQLHIV 67 (91)
T ss_pred ccEEEEEcCchhHHHHHHHHHHHhC-CCcccceeeccCCCCEEEEEEEEEE
Confidence 7899999999999999999999887 777777664 345554 344444
No 346
>cd07253 Glo_EDI_BRP_like_2 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=20.69 E-value=2.1e+02 Score=22.10 Aligned_cols=51 Identities=20% Similarity=0.348 Sum_probs=35.7
Q ss_pred eEEEEEeCCCccHHHHHHHHHHhCCceEEEEEEeecCC-eeeeEEEEEcCCCCCC
Q 017268 263 LELELCTEDRVGLLSDITRIFRENSLSIKRAEISTIGG-KVKDTFYVTDVTGNPV 316 (374)
Q Consensus 263 tvieV~~~DRpGLL~~It~~L~~~~i~I~~a~i~T~g~-~~~D~Fyv~d~~g~~l 316 (374)
..+.+...+. +..+.+.|.+.|+.+...-....+. -....||+.|++|..+
T Consensus 69 ~hi~~~~~~~---~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~DPdG~~v 120 (125)
T cd07253 69 DDLCLITEPP---IDELVAHLEAHGVPIEEGPVPRTGARGPITSVYFRDPDGNLI 120 (125)
T ss_pred ceEEEEeccc---HHHHHHHHHHCCceeecCcccccCCCCCccEEEEECCCCCEE
Confidence 4556666654 7889999999999886554433232 2346799999999875
No 347
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=20.43 E-value=2.1e+02 Score=28.97 Aligned_cols=33 Identities=12% Similarity=-0.014 Sum_probs=30.4
Q ss_pred EEEEEeCCCcchHHHHHHHHHhCCceEEEEEEE
Q 017268 186 VITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVN 218 (374)
Q Consensus 186 ~v~V~~~DrpGLl~~i~~~l~~~glnI~~A~i~ 218 (374)
.++|.|.||.||.-++...|...++|+....|.
T Consensus 2 RleV~cedRlGltrelLdlLv~r~idl~~iEid 34 (511)
T COG3283 2 RLEVFCEDRLGLTRELLDLLVLRGIDLRGIEID 34 (511)
T ss_pred ceEEEehhhhchHHHHHHHHHhcccCccceeec
Confidence 478999999999999999999999999988883
No 348
>PRK05974 phosphoribosylformylglycinamidine synthase subunit PurS; Reviewed
Probab=20.04 E-value=4e+02 Score=20.22 Aligned_cols=57 Identities=9% Similarity=0.134 Sum_probs=35.0
Q ss_pred EEEEeCCCccHHH----HHHHHHHhCCce-EEEEEEeecCCeeeeEEEEEcCCC--CCCChhHHHHHHHHHh
Q 017268 265 LELCTEDRVGLLS----DITRIFRENSLS-IKRAEISTIGGKVKDTFYVTDVTG--NPVDPKIIDSIRRQIG 329 (374)
Q Consensus 265 ieV~~~DRpGLL~----~It~~L~~~~i~-I~~a~i~T~g~~~~D~Fyv~d~~g--~~l~~~~~~~l~~~l~ 329 (374)
+.|.-.=|||++- .|.+.|.++|++ +..+++.. .|+++- +| .....+..+.+++.|+
T Consensus 3 ~~V~V~~k~gv~Dp~G~ai~~~l~~lg~~~v~~Vr~~k-------~~~l~~-~~~~~~~a~~~v~~i~~~lL 66 (80)
T PRK05974 3 VKVTVTLKEGVLDPQGQAIKGALGSLGYDGVEDVRQGK-------YFELEL-EGESEEKAEADLKEMCEKLL 66 (80)
T ss_pred EEEEEEECCCCcChHHHHHHHHHHHcCCCCcceEEEEE-------EEEEEE-cCCchhhhHHHHHHHHHHhc
Confidence 4455556788774 567778888887 66666543 366643 23 2333456777777665
Done!