BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017269
(374 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2ECT|A Chain A, Solution Structure Of The Zinc Finger, C3hc4 Type (Ring
Finger) Domain Of Ring Finger Protein 126
Length = 78
Score = 68.9 bits (167), Expect = 4e-12, Method: Composition-based stats.
Identities = 25/57 (43%), Positives = 35/57 (61%)
Query: 179 ESHVAKESHCAVCKEPFQLNSEAREMPCKHIYHGECILPWLSMRNSCPLCRRELPNE 235
E HV C VCKE + L R++PC H++H CI+PWL +SCP+CR+ L +
Sbjct: 9 EEHVGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSLTGQ 65
>pdb|2L0B|A Chain A, Solution Nmr Structure Of Zinc Finger Domain Of E3
Ubiquitin-Protein Ligase Praja-1 From Homo Sapiens,
Northeast Structural Genomics Consortium (Nesg) Target
Hr4710b
Length = 91
Score = 67.0 bits (162), Expect = 2e-11, Method: Composition-based stats.
Identities = 28/75 (37%), Positives = 42/75 (56%), Gaps = 2/75 (2%)
Query: 161 NPPASKAAIESMPVVTIAESH--VAKESHCAVCKEPFQLNSEAREMPCKHIYHGECILPW 218
NPPASK +I+++P + + E H V +E C +C + A E+PC H +H C+ W
Sbjct: 14 NPPASKESIDALPEILVTEDHGAVGQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIW 73
Query: 219 LSMRNSCPLCRRELP 233
L +CP+CR P
Sbjct: 74 LQKSGTCPVCRCMFP 88
>pdb|2EP4|A Chain A, Solution Structure Of Ring Finger From Human Ring Finger
Protein 24
Length = 74
Score = 53.9 bits (128), Expect = 1e-07, Method: Composition-based stats.
Identities = 23/57 (40%), Positives = 31/57 (54%)
Query: 188 CAVCKEPFQLNSEAREMPCKHIYHGECILPWLSMRNSCPLCRRELPNEANDRGSNVG 244
CAVC E F+ E PCKH +H +C++ WL +R CPLC + A G + G
Sbjct: 18 CAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKVCPLCNMPVLQLAQLSGPSSG 74
>pdb|1IYM|A Chain A, Ring-H2 Finger Domain Of El5
Length = 55
Score = 48.9 bits (115), Expect = 5e-06, Method: Composition-based stats.
Identities = 20/43 (46%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Query: 188 CAVCKEPFQLNSEAREMP-CKHIYHGECILPWLSMRNSCPLCR 229
CAVC + EAR +P C H +H EC+ WL ++CPLCR
Sbjct: 8 CAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCR 50
>pdb|2KIZ|A Chain A, Solution Structure Of Arkadia Ring-H2 Finger Domain
Length = 69
Score = 48.5 bits (114), Expect = 6e-06, Method: Composition-based stats.
Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 4/53 (7%)
Query: 188 CAVCKEPFQLNSEAREMPCKHIYHGECILPWLSMRNSCPLCR----RELPNEA 236
C +C + + R +PC H++H C+ WL CP+CR +LP+E+
Sbjct: 17 CTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDIEAQLPSES 69
>pdb|1X4J|A Chain A, Solution Structure Of Ring Finger In Ring Finger Protein
38
Length = 75
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 30/52 (57%)
Query: 180 SHVAKESHCAVCKEPFQLNSEAREMPCKHIYHGECILPWLSMRNSCPLCRRE 231
+H ++++ C VC F+ R +PC H +H +C+ WL +CP+CR +
Sbjct: 18 NHQSEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRAD 69
>pdb|2D8T|A Chain A, Solution Structure Of The Ring Domain Of The Human Ring
Finger Protein 146
Length = 71
Score = 38.5 bits (88), Expect = 0.006, Method: Composition-based stats.
Identities = 25/83 (30%), Positives = 40/83 (48%), Gaps = 15/83 (18%)
Query: 164 ASKAAIESMPVVTIAESHVAKESHCAVCKEPFQLNSEAREMPCKHIYHGECI--LPWLSM 221
+S ++ + P +T+ E CA+C Q +PCKH++ C+ WL
Sbjct: 2 SSGSSGNTAPSLTVPE--------CAIC---LQTCVHPVSLPCKHVFCYLCVKGASWLGK 50
Query: 222 RNSCPLCRRELPNEANDRGSNVG 244
R C LCR+E+P + D G + G
Sbjct: 51 R--CALCRQEIPEDFLDSGPSSG 71
>pdb|4AYC|B Chain B, Rnf8 Ring Domain Structure
Length = 138
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 37/89 (41%), Gaps = 10/89 (11%)
Query: 152 DFNGVTRFVNPPASKAAIESMPVVTIAE---SH----VAKESHCAVCKEPFQLNSEAREM 204
DF + + N + E + E SH + E C +C E F EA +
Sbjct: 13 DFEAIIQAKNKELEQTKEEKEKMQAQKEEVLSHMNDVLENELQCIICSEYF---IEAVTL 69
Query: 205 PCKHIYHGECILPWLSMRNSCPLCRRELP 233
C H + CI W+ + CP+CR+++
Sbjct: 70 NCAHSFCSYCINEWMKRKIECPICRKDIK 98
>pdb|4EPO|C Chain C, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|G Chain G, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|H Chain H, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|K Chain K, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|L Chain L, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
Length = 149
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 41/95 (43%), Gaps = 10/95 (10%)
Query: 149 TQLDFNGVTRFVNPPASKAAIESMPVVTIAE---SH----VAKESHCAVCKEPFQLNSEA 201
++ DF + + N + E + E SH + E C +C E F EA
Sbjct: 21 SKKDFEAIIQAKNKELEQTKEEKEKMQAQKEEVLSHMNDVLENELQCIICSEYF---IEA 77
Query: 202 REMPCKHIYHGECILPWLSMRNSCPLCRRELPNEA 236
+ C H + CI W+ + CP+CR+++ ++
Sbjct: 78 VTLNCAHSFCSYCINEWMKRKIECPICRKDIKSKT 112
>pdb|4AYC|A Chain A, Rnf8 Ring Domain Structure
Length = 138
Score = 37.7 bits (86), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 37/89 (41%), Gaps = 10/89 (11%)
Query: 152 DFNGVTRFVNPPASKAAIESMPVVTIAE---SH----VAKESHCAVCKEPFQLNSEAREM 204
DF + + N + E + E SH + E C +C E F EA +
Sbjct: 13 DFEAIIQAKNKELEQTKEEKEKMQAQKEEVLSHMNDVLENELQCIICSEYF---IEAVTL 69
Query: 205 PCKHIYHGECILPWLSMRNSCPLCRRELP 233
C H + CI W+ + CP+CR+++
Sbjct: 70 NCAHSFCSYCINEWMKRKIECPICRKDIK 98
>pdb|1U6G|B Chain B, Crystal Structure Of The Cand1-Cul1-Roc1 Complex
pdb|2HYE|D Chain D, Crystal Structure Of The Ddb1-cul4a-rbx1-sv5v Complex
Length = 108
Score = 35.4 bits (80), Expect = 0.050, Method: Composition-based stats.
Identities = 13/26 (50%), Positives = 14/26 (53%)
Query: 206 CKHIYHGECILPWLSMRNSCPLCRRE 231
C H +H CI WL R CPL RE
Sbjct: 75 CNHAFHFHCISRWLKTRQVCPLDNRE 100
>pdb|1LDJ|B Chain B, Structure Of The Cul1-rbx1-skp1-f Boxskp2 Scf Ubiquitin
Ligase Complex
pdb|1LDK|C Chain C, Structure Of The Cul1-Rbx1-Skp1-F Boxskp2 Scf Ubiquitin
Ligase Complex
Length = 90
Score = 35.4 bits (80), Expect = 0.050, Method: Composition-based stats.
Identities = 13/26 (50%), Positives = 14/26 (53%)
Query: 206 CKHIYHGECILPWLSMRNSCPLCRRE 231
C H +H CI WL R CPL RE
Sbjct: 57 CNHAFHFHCISRWLKTRQVCPLDNRE 82
>pdb|2LGV|A Chain A, Rbx1
Length = 100
Score = 35.4 bits (80), Expect = 0.050, Method: Composition-based stats.
Identities = 13/26 (50%), Positives = 14/26 (53%)
Query: 206 CKHIYHGECILPWLSMRNSCPLCRRE 231
C H +H CI WL R CPL RE
Sbjct: 67 CNHAFHFHCISRWLKTRQVCPLDNRE 92
>pdb|4A0K|B Chain B, Structure Of Ddb1-Ddb2-Cul4a-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 117
Score = 35.4 bits (80), Expect = 0.050, Method: Composition-based stats.
Identities = 13/26 (50%), Positives = 14/26 (53%)
Query: 206 CKHIYHGECILPWLSMRNSCPLCRRE 231
C H +H CI WL R CPL RE
Sbjct: 84 CNHAFHFHCISRWLKTRQVCPLDNRE 109
>pdb|4A0C|D Chain D, Structure Of The Cand1-Cul4b-Rbx1 Complex
pdb|4A0C|F Chain F, Structure Of The Cand1-Cul4b-Rbx1 Complex
pdb|4A0L|F Chain F, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|I Chain I, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 98
Score = 35.4 bits (80), Expect = 0.050, Method: Composition-based stats.
Identities = 13/26 (50%), Positives = 14/26 (53%)
Query: 206 CKHIYHGECILPWLSMRNSCPLCRRE 231
C H +H CI WL R CPL RE
Sbjct: 65 CNHAFHFHCISRWLKTRQVCPLDNRE 90
>pdb|3DPL|R Chain R, Structural Insights Into Nedd8 Activation Of Cullin-Ring
Ligases: Conformational Control Of Conjugation.
pdb|3RTR|B Chain B, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|3RTR|D Chain D, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|3RTR|F Chain F, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|3RTR|H Chain H, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|4F52|B Chain B, Structure Of A Glomulin-Rbx1-Cul1 Complex
pdb|4F52|D Chain D, Structure Of A Glomulin-Rbx1-Cul1 Complex
Length = 106
Score = 35.4 bits (80), Expect = 0.050, Method: Composition-based stats.
Identities = 13/26 (50%), Positives = 14/26 (53%)
Query: 206 CKHIYHGECILPWLSMRNSCPLCRRE 231
C H +H CI WL R CPL RE
Sbjct: 73 CNHAFHFHCISRWLKTRQVCPLDNRE 98
>pdb|3DQV|R Chain R, Structural Insights Into Nedd8 Activation Of Cullin-Ring
Ligases: Conformational Control Of Conjugation
pdb|3DQV|Y Chain Y, Structural Insights Into Nedd8 Activation Of Cullin-Ring
Ligases: Conformational Control Of Conjugation
Length = 106
Score = 35.4 bits (80), Expect = 0.051, Method: Composition-based stats.
Identities = 13/26 (50%), Positives = 14/26 (53%)
Query: 206 CKHIYHGECILPWLSMRNSCPLCRRE 231
C H +H CI WL R CPL RE
Sbjct: 73 CNHAFHFHCISRWLKTRQVCPLDNRE 98
>pdb|2ECL|A Chain A, Solution Structure Of The Ring Domain Of The Human
Ring-Box Protein 2
Length = 81
Score = 34.7 bits (78), Expect = 0.091, Method: Composition-based stats.
Identities = 10/26 (38%), Positives = 16/26 (61%)
Query: 206 CKHIYHGECILPWLSMRNSCPLCRRE 231
C H +H C+ W+ N CPLC+++
Sbjct: 48 CNHSFHNCCMSLWVKQNNRCPLCQQD 73
>pdb|1RMD|A Chain A, Rag1 Dimerization Domain
Length = 116
Score = 33.5 bits (75), Expect = 0.21, Method: Composition-based stats.
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 4/51 (7%)
Query: 180 SHVAKESHCAVCKEPFQLNSEAREMPCKHIYHGECILPWLSMRNS-CPLCR 229
+H K C +C+ + ++ E CKH++ CIL L + S CP CR
Sbjct: 18 AHFVKSISCQICE---HILADPVETSCKHLFCRICILRCLKVMGSYCPSCR 65
>pdb|1CHC|A Chain A, Structure Of The C3hc4 Domain By 1h-Nuclear Magnetic
Resonance Spectroscopy; A New Structural Class Of Zinc-
Finger
Length = 68
Score = 33.1 bits (74), Expect = 0.28, Method: Composition-based stats.
Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Query: 188 CAVCKEPFQLNSEAREMPCKHIYHGECILPWLSMRNSCPLCR 229
C +C E S A +PC H + CI W+ +CPLC+
Sbjct: 8 CPICLEDPSNYSMA--LPCLHAFCYVCITRWIRQNPTCPLCK 47
>pdb|2Y43|A Chain A, Rad18 Ubiquitin Ligase Ring Domain Structure
pdb|2Y43|B Chain B, Rad18 Ubiquitin Ligase Ring Domain Structure
Length = 99
Score = 32.3 bits (72), Expect = 0.49, Method: Composition-based stats.
Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 4/42 (9%)
Query: 188 CAVCKEPFQLNSEAREMP-CKHIYHGECILPWLSMRNSCPLC 228
C +C E F + A +P C H Y CI +LS + CP C
Sbjct: 25 CGICFEYFNI---AMIIPQCSHNYCSLCIRKFLSYKTQCPTC 63
>pdb|2ECN|A Chain A, Solution Structure Of The Ring Domain Of The Human Ring
Finger Protein 141
Length = 70
Score = 31.6 bits (70), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 6/44 (13%)
Query: 204 MPCKHIYHGECILPWLSMRNSCPLCRRELPNEANDRGSNVGGGP 247
+PC H + +CI W +CP+CR ++ G+N GP
Sbjct: 30 LPCAHSFCQKCIDKWSDRHRNCPICRLQMT------GANESSGP 67
>pdb|2JRJ|A Chain A, Solution Structure Of The Human Pirh2 Ring-H2 Domain.
Northeast Structural Genomics Consortium Target Ht2b
Length = 52
Score = 31.2 bits (69), Expect = 0.90, Method: Composition-based stats.
Identities = 14/45 (31%), Positives = 20/45 (44%), Gaps = 1/45 (2%)
Query: 185 ESHCAVCKEPFQLNSE-AREMPCKHIYHGECILPWLSMRNSCPLC 228
+ +C +C E + A +PC H+ H C L CPLC
Sbjct: 5 QQNCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLC 49
>pdb|2XEU|A Chain A, Ring Domain
Length = 64
Score = 30.4 bits (67), Expect = 1.6, Method: Composition-based stats.
Identities = 9/27 (33%), Positives = 17/27 (62%)
Query: 206 CKHIYHGECILPWLSMRNSCPLCRREL 232
C H++ +C+ L N+CP CR+++
Sbjct: 28 CGHVFCSQCLRDSLKNANTCPTCRKKI 54
>pdb|2K4D|A Chain A, E2-C-Cbl Recognition Is Necessary But Not Sufficient For
Ubiquitination Activity
Length = 83
Score = 30.4 bits (67), Expect = 1.8, Method: Composition-based stats.
Identities = 14/46 (30%), Positives = 21/46 (45%), Gaps = 4/46 (8%)
Query: 188 CAVCKEPFQLNSEAREMPCKHIYHGECILPWL-SMRNSCPLCRREL 232
C +C E + + + PC H+ C+ W S CP CR E+
Sbjct: 27 CKICAEN---DKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEI 69
>pdb|2LDR|A Chain A, Solution Structure Of Helix-Ring Domain Of Cbl-B In The
Tyr363 Phosphorylated Form
Length = 82
Score = 30.0 bits (66), Expect = 2.3, Method: Composition-based stats.
Identities = 14/46 (30%), Positives = 21/46 (45%), Gaps = 4/46 (8%)
Query: 188 CAVCKEPFQLNSEAREMPCKHIYHGECILPWL-SMRNSCPLCRREL 232
C +C E + + + PC H+ C+ W S CP CR E+
Sbjct: 29 CKICAEN---DKDVKIEPCGHLMCTSCLTAWQESDGQGCPFCRCEI 71
>pdb|2EA6|A Chain A, Solution Structure Of The Ring Domain Of The Human Ring
Finger Protein 4
Length = 69
Score = 30.0 bits (66), Expect = 2.3, Method: Composition-based stats.
Identities = 9/27 (33%), Positives = 17/27 (62%)
Query: 206 CKHIYHGECILPWLSMRNSCPLCRREL 232
C H++ +C+ L N+CP CR+++
Sbjct: 40 CGHVFCSQCLRDSLKNANTCPTCRKKI 66
>pdb|4A49|A Chain A, Structure Of Phosphotyr371-C-Cbl-Ubch5b Complex
Length = 84
Score = 30.0 bits (66), Expect = 2.4, Method: Composition-based stats.
Identities = 14/46 (30%), Positives = 21/46 (45%), Gaps = 4/46 (8%)
Query: 188 CAVCKEPFQLNSEAREMPCKHIYHGECILPWL-SMRNSCPLCRREL 232
C +C E + + + PC H+ C+ W S CP CR E+
Sbjct: 30 CKICAEN---DKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEI 72
>pdb|3NG2|A Chain A, Crystal Structure Of The Rnf4 Ring Domain Dimer
pdb|3NG2|B Chain B, Crystal Structure Of The Rnf4 Ring Domain Dimer
Length = 71
Score = 29.6 bits (65), Expect = 2.5, Method: Composition-based stats.
Identities = 9/27 (33%), Positives = 17/27 (62%)
Query: 206 CKHIYHGECILPWLSMRNSCPLCRREL 232
C H++ +C+ L N+CP CR+++
Sbjct: 35 CGHVFCSQCLRDSLKNANTCPTCRKKI 61
>pdb|2ECM|A Chain A, Solution Structure Of The Ring Domain Of The Ring Finger
And Chy Zinc Finger Domain-Containing Protein 1 From Mus
Musculus
Length = 55
Score = 29.3 bits (64), Expect = 3.3, Method: Composition-based stats.
Identities = 15/44 (34%), Positives = 19/44 (43%), Gaps = 1/44 (2%)
Query: 186 SHCAVCKEPFQLNSE-AREMPCKHIYHGECILPWLSMRNSCPLC 228
S C +C E + A +PC H+ H C L CPLC
Sbjct: 6 SGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLC 49
>pdb|2PUY|A Chain A, Crystal Structure Of The Bhc80 Phd Finger
pdb|2PUY|B Chain B, Crystal Structure Of The Bhc80 Phd Finger
Length = 60
Score = 29.3 bits (64), Expect = 3.8, Method: Composition-based stats.
Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 7/56 (12%)
Query: 181 HVAKESHCAVCKEPFQLNSEAREMPCKHIYHGECILPWLSMRNS----CPLCRREL 232
H+ E C+VC++ QL C +YH +C+ P L CP C+ ++
Sbjct: 1 HMIHEDFCSVCRKSGQL---LMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQDQM 53
>pdb|4A4B|A Chain A, Structure Of Modified Phosphotyr371-C-Cbl-Ubch5b-Zap-70
Complex
Length = 391
Score = 28.9 bits (63), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 21/46 (45%), Gaps = 4/46 (8%)
Query: 188 CAVCKEPFQLNSEAREMPCKHIYHGECILPWL-SMRNSCPLCRREL 232
C +C E + + + PC H+ C+ W S CP CR E+
Sbjct: 337 CKICAEN---DKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEI 379
>pdb|4A4C|A Chain A, Structure Of Phosphotyr371-C-Cbl-Ubch5b-Zap-70 Complex
Length = 391
Score = 28.9 bits (63), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 21/46 (45%), Gaps = 4/46 (8%)
Query: 188 CAVCKEPFQLNSEAREMPCKHIYHGECILPWL-SMRNSCPLCRREL 232
C +C E + + + PC H+ C+ W S CP CR E+
Sbjct: 337 CKICAEN---DKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEI 379
>pdb|3VGO|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
pdb|3VGO|B Chain B, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
pdb|3VGO|C Chain C, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
Length = 394
Score = 28.9 bits (63), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 21/46 (45%), Gaps = 4/46 (8%)
Query: 188 CAVCKEPFQLNSEAREMPCKHIYHGECILPWL-SMRNSCPLCRREL 232
C +C E + + + PC H+ C+ W S CP CR E+
Sbjct: 341 CKICAEN---DKDVKIEPCGHLMCTSCLTAWQESDGQGCPFCRCEI 383
>pdb|2Y1M|A Chain A, Structure Of Native C-Cbl
pdb|2Y1M|B Chain B, Structure Of Native C-Cbl
pdb|2Y1M|C Chain C, Structure Of Native C-Cbl
pdb|2Y1M|D Chain D, Structure Of Native C-Cbl
pdb|2Y1M|E Chain E, Structure Of Native C-Cbl
pdb|2Y1M|F Chain F, Structure Of Native C-Cbl
pdb|2Y1N|A Chain A, Structure Of C-Cbl-Zap-70 Peptide Complex
pdb|2Y1N|C Chain C, Structure Of C-Cbl-Zap-70 Peptide Complex
Length = 389
Score = 28.9 bits (63), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 21/46 (45%), Gaps = 4/46 (8%)
Query: 188 CAVCKEPFQLNSEAREMPCKHIYHGECILPWL-SMRNSCPLCRREL 232
C +C E + + + PC H+ C+ W S CP CR E+
Sbjct: 335 CKICAEN---DKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEI 377
>pdb|1FBV|A Chain A, Structure Of A Cbl-Ubch7 Complex: Ring Domain Function In
Ubiquitin-Protein Ligases
Length = 388
Score = 28.9 bits (63), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 21/46 (45%), Gaps = 4/46 (8%)
Query: 188 CAVCKEPFQLNSEAREMPCKHIYHGECILPWL-SMRNSCPLCRREL 232
C +C E + + + PC H+ C+ W S CP CR E+
Sbjct: 335 CKICAEN---DKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEI 377
>pdb|2YKU|A Chain A, Structural Determinants Of The Beta-Selectivity Of A
Bacterial Aminotransferase
pdb|2YKU|B Chain B, Structural Determinants Of The Beta-Selectivity Of A
Bacterial Aminotransferase
pdb|2YKU|C Chain C, Structural Determinants Of The Beta-Selectivity Of A
Bacterial Aminotransferase
pdb|2YKV|A Chain A, Structural Determinants Of The Beta-Selectivity Of A
Bacterial Aminotransferase
pdb|2YKV|B Chain B, Structural Determinants Of The Beta-Selectivity Of A
Bacterial Aminotransferase
pdb|2YKV|C Chain C, Structural Determinants Of The Beta-Selectivity Of A
Bacterial Aminotransferase
pdb|2YKX|A Chain A, Structural Determinants Of The Beta-Selectivity Of A
Bacterial Aminotransferase
pdb|2YKX|B Chain B, Structural Determinants Of The Beta-Selectivity Of A
Bacterial Aminotransferase
pdb|2YKX|C Chain C, Structural Determinants Of The Beta-Selectivity Of A
Bacterial Aminotransferase
pdb|2YKY|A Chain A, Structural Determinants Of The Beta-Selectivity Of A
Bacterial Aminotransferase
pdb|2YKY|B Chain B, Structural Determinants Of The Beta-Selectivity Of A
Bacterial Aminotransferase
pdb|2YKY|C Chain C, Structural Determinants Of The Beta-Selectivity Of A
Bacterial Aminotransferase
pdb|4AO4|A Chain A, Structural Determinants Of The Beta-Selectivity Of A
Bacterial Aminotransferase
pdb|4AO4|B Chain B, Structural Determinants Of The Beta-Selectivity Of A
Bacterial Aminotransferase
pdb|4AO4|C Chain C, Structural Determinants Of The Beta-Selectivity Of A
Bacterial Aminotransferase
Length = 465
Score = 28.5 bits (62), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 24/52 (46%), Gaps = 9/52 (17%)
Query: 244 GGGPDETLGL-----TIWRLPGGGFAVGRFNGSRRAAERELPVVFTEMDGGF 290
GGG E LG+ T+ + GGG + G F G R ER P DG F
Sbjct: 282 GGGAQEMLGISADLTTLGKYIGGGMSFGAFGGRRDLMERFDPA----RDGAF 329
>pdb|2YSM|A Chain A, Solution Structure Of The First And Second Phd Domain From
MyeloidLYMPHOID OR MIXED-Lineage Leukemia Protein 3
Homolog
Length = 111
Score = 28.1 bits (61), Expect = 7.6, Method: Composition-based stats.
Identities = 15/48 (31%), Positives = 20/48 (41%), Gaps = 4/48 (8%)
Query: 186 SHCAVCKEPFQLNSEAREMPCKHIYHGEC----ILPWLSMRNSCPLCR 229
++CAVC P L + C YHG C + P CP C+
Sbjct: 8 ANCAVCDSPGDLLDQFFCTTCGQHYHGMCLDIAVTPLKRAGWQCPECK 55
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.138 0.432
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,466,580
Number of Sequences: 62578
Number of extensions: 490076
Number of successful extensions: 697
Number of sequences better than 100.0: 39
Number of HSP's better than 100.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 669
Number of HSP's gapped (non-prelim): 40
length of query: 374
length of database: 14,973,337
effective HSP length: 100
effective length of query: 274
effective length of database: 8,715,537
effective search space: 2388057138
effective search space used: 2388057138
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)