Query 017269
Match_columns 374
No_of_seqs 363 out of 1848
Neff 5.8
Searched_HMMs 29240
Date Mon Mar 25 11:43:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017269.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017269hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2l0b_A E3 ubiquitin-protein li 99.7 6.9E-17 2.3E-21 130.0 7.1 76 159-234 12-89 (91)
2 1x4j_A Ring finger protein 38; 99.6 3.5E-16 1.2E-20 120.9 3.0 70 166-235 3-73 (75)
3 2ep4_A Ring finger protein 24; 99.5 2.2E-14 7.7E-19 110.1 6.0 55 183-237 13-67 (74)
4 2ect_A Ring finger protein 126 99.5 3.2E-14 1.1E-18 110.3 6.5 56 182-237 12-67 (78)
5 1iym_A EL5; ring-H2 finger, ub 99.5 2E-14 6.7E-19 104.2 4.5 51 183-233 3-54 (55)
6 2kiz_A E3 ubiquitin-protein li 99.5 3.3E-14 1.1E-18 107.8 5.7 54 183-236 12-65 (69)
7 1v87_A Deltex protein 2; ring- 99.4 2.9E-13 1E-17 112.2 5.7 53 184-236 24-96 (114)
8 2ecl_A Ring-box protein 2; RNF 99.4 2.2E-13 7.4E-18 107.4 4.2 51 185-235 15-77 (81)
9 2ecm_A Ring finger and CHY zin 99.4 3.7E-13 1.3E-17 97.2 4.5 50 184-233 4-54 (55)
10 3dpl_R Ring-box protein 1; ubi 99.3 6.1E-13 2.1E-17 110.7 5.3 51 184-234 36-101 (106)
11 2ea6_A Ring finger protein 4; 99.3 7.9E-13 2.7E-17 99.4 4.5 52 183-234 13-68 (69)
12 3ng2_A RNF4, snurf, ring finge 99.3 9.1E-13 3.1E-17 99.9 4.2 54 183-236 8-65 (71)
13 2d8s_A Cellular modulator of i 99.3 1.8E-12 6.1E-17 102.6 5.6 55 184-239 14-75 (80)
14 2d8t_A Dactylidin, ring finger 99.3 9.7E-13 3.3E-17 100.5 2.9 51 184-237 14-64 (71)
15 2xeu_A Ring finger protein 4; 99.3 1.5E-12 5.3E-17 96.3 3.5 51 185-235 3-57 (64)
16 1chc_A Equine herpes virus-1 r 99.3 4.3E-12 1.5E-16 95.6 5.3 50 184-235 4-53 (68)
17 2djb_A Polycomb group ring fin 99.3 4.7E-12 1.6E-16 96.9 5.6 53 183-238 13-66 (72)
18 2ecn_A Ring finger protein 141 99.3 1.7E-12 5.9E-17 98.4 3.1 50 183-236 13-62 (70)
19 2ct2_A Tripartite motif protei 99.2 1.2E-11 4E-16 97.3 5.7 54 182-235 12-69 (88)
20 2yur_A Retinoblastoma-binding 99.2 1.7E-11 5.7E-16 94.5 5.4 51 183-236 13-66 (74)
21 2ct0_A Non-SMC element 1 homol 99.2 1.6E-11 5.4E-16 96.0 4.8 54 184-239 14-69 (74)
22 2ysl_A Tripartite motif-contai 99.2 2E-11 6.7E-16 93.0 5.0 50 183-235 18-70 (73)
23 2csy_A Zinc finger protein 183 99.2 1.9E-11 6.4E-16 95.5 4.7 48 183-233 13-60 (81)
24 4a0k_B E3 ubiquitin-protein li 99.2 3.6E-12 1.2E-16 107.9 0.2 51 184-234 47-112 (117)
25 2ecy_A TNF receptor-associated 99.1 2.1E-11 7.3E-16 91.6 3.9 50 183-235 13-63 (66)
26 4ayc_A E3 ubiquitin-protein li 99.1 1.9E-11 6.3E-16 105.2 3.6 48 185-235 53-100 (138)
27 1t1h_A Gspef-atpub14, armadill 99.1 4.7E-11 1.6E-15 92.3 5.0 51 182-235 5-56 (78)
28 2ecw_A Tripartite motif-contai 99.1 9.8E-11 3.4E-15 91.0 5.7 50 183-235 17-72 (85)
29 2ecv_A Tripartite motif-contai 99.1 1.1E-10 3.8E-15 90.7 5.9 51 183-236 17-73 (85)
30 3lrq_A E3 ubiquitin-protein li 99.1 1.4E-11 4.9E-16 100.5 0.7 49 184-235 21-71 (100)
31 2egp_A Tripartite motif-contai 99.1 4.1E-11 1.4E-15 92.5 2.5 51 182-235 9-66 (79)
32 2ckl_A Polycomb group ring fin 99.1 7.3E-11 2.5E-15 97.1 3.9 52 181-235 11-63 (108)
33 2ysj_A Tripartite motif-contai 99.1 1.2E-10 4.2E-15 86.4 4.6 44 182-228 17-63 (63)
34 4ap4_A E3 ubiquitin ligase RNF 99.0 7.4E-11 2.5E-15 98.9 3.8 53 184-236 6-62 (133)
35 2y43_A E3 ubiquitin-protein li 99.0 8E-11 2.7E-15 95.3 2.5 48 185-235 22-70 (99)
36 4ap4_A E3 ubiquitin ligase RNF 99.0 1.6E-10 5.3E-15 96.9 3.5 52 184-235 71-126 (133)
37 2ecj_A Tripartite motif-contai 99.0 1.6E-10 5.6E-15 83.9 3.2 43 183-228 13-58 (58)
38 3ztg_A E3 ubiquitin-protein li 99.0 2.2E-10 7.5E-15 91.2 4.2 49 182-233 10-61 (92)
39 3fl2_A E3 ubiquitin-protein li 99.0 3.9E-10 1.3E-14 94.9 5.3 48 184-234 51-99 (124)
40 1g25_A CDK-activating kinase a 99.0 4.2E-10 1.4E-14 84.2 4.3 51 185-235 3-56 (65)
41 2ckl_B Ubiquitin ligase protei 98.9 2.2E-10 7.5E-15 101.0 2.9 49 184-235 53-103 (165)
42 1z6u_A NP95-like ring finger p 98.9 1.7E-10 5.9E-15 101.1 2.0 49 184-235 77-126 (150)
43 1jm7_A BRCA1, breast cancer ty 98.9 5.6E-10 1.9E-14 91.6 4.0 49 185-236 21-72 (112)
44 3hct_A TNF receptor-associated 98.9 6.7E-10 2.3E-14 92.9 3.2 50 183-235 16-66 (118)
45 3l11_A E3 ubiquitin-protein li 98.9 2.7E-10 9.4E-15 94.5 0.1 47 185-234 15-62 (115)
46 2y1n_A E3 ubiquitin-protein li 98.8 1.5E-09 5.1E-14 108.7 5.0 48 185-235 332-380 (389)
47 2kr4_A Ubiquitin conjugation f 98.8 1.8E-09 6.1E-14 85.8 4.5 50 183-235 12-61 (85)
48 1rmd_A RAG1; V(D)J recombinati 98.8 2.1E-09 7.1E-14 89.3 4.2 49 185-236 23-72 (116)
49 1wgm_A Ubiquitin conjugation f 98.8 3E-09 1E-13 86.9 5.0 50 183-235 20-70 (98)
50 2kre_A Ubiquitin conjugation f 98.8 2.7E-09 9.2E-14 87.5 4.7 50 183-235 27-76 (100)
51 1bor_A Transcription factor PM 98.8 1.5E-09 5E-14 79.5 2.1 46 184-235 5-50 (56)
52 3knv_A TNF receptor-associated 98.8 1.1E-09 3.6E-14 95.1 1.4 51 182-235 28-79 (141)
53 2vje_A E3 ubiquitin-protein li 98.8 4.1E-09 1.4E-13 79.4 3.6 47 184-233 7-56 (64)
54 1e4u_A Transcriptional repress 98.7 1.1E-08 3.7E-13 80.3 5.8 55 182-237 8-65 (78)
55 1jm7_B BARD1, BRCA1-associated 98.7 4.4E-09 1.5E-13 87.7 2.9 46 185-235 22-68 (117)
56 2vje_B MDM4 protein; proto-onc 98.7 8.2E-09 2.8E-13 77.4 3.6 47 184-233 6-55 (63)
57 4ic3_A E3 ubiquitin-protein li 98.7 1.9E-09 6.5E-14 83.3 -0.1 44 185-235 24-68 (74)
58 2c2l_A CHIP, carboxy terminus 98.6 1.9E-08 6.5E-13 94.1 4.0 50 183-235 206-256 (281)
59 2yu4_A E3 SUMO-protein ligase 98.6 2.5E-08 8.6E-13 80.4 3.2 49 184-235 6-64 (94)
60 3hcs_A TNF receptor-associated 98.5 2.7E-08 9.3E-13 87.9 3.2 51 182-235 15-66 (170)
61 1vyx_A ORF K3, K3RING; zinc-bi 98.5 5.4E-08 1.8E-12 72.7 3.7 48 184-234 5-59 (60)
62 3k1l_B Fancl; UBC, ring, RWD, 98.4 4.9E-08 1.7E-12 96.1 1.6 52 184-235 307-374 (381)
63 2ea5_A Cell growth regulator w 98.4 2.1E-07 7.3E-12 70.8 4.7 45 184-235 14-59 (68)
64 2ecg_A Baculoviral IAP repeat- 98.4 1.1E-07 3.8E-12 73.3 2.6 44 185-235 25-69 (75)
65 2f42_A STIP1 homology and U-bo 98.4 1.5E-07 5E-12 85.1 3.8 51 183-236 104-155 (179)
66 2yho_A E3 ubiquitin-protein li 98.2 2.5E-07 8.5E-12 72.4 1.7 44 185-235 18-62 (79)
67 1wim_A KIAA0161 protein; ring 98.2 3.9E-07 1.3E-11 72.9 2.6 47 185-231 5-61 (94)
68 2bay_A PRE-mRNA splicing facto 98.2 4.4E-07 1.5E-11 67.8 2.6 49 186-237 4-53 (61)
69 3t6p_A Baculoviral IAP repeat- 98.1 5.9E-07 2E-11 88.7 2.0 44 184-234 294-338 (345)
70 3htk_C E3 SUMO-protein ligase 98.0 2.1E-06 7.3E-11 81.7 3.1 50 184-236 180-234 (267)
71 3nw0_A Non-structural maintena 97.8 8.5E-06 2.9E-10 76.5 3.4 51 185-238 180-233 (238)
72 3vk6_A E3 ubiquitin-protein li 97.7 1.8E-05 6.2E-10 64.8 3.4 47 187-235 3-50 (101)
73 2ko5_A Ring finger protein Z; 95.0 0.028 9.7E-07 45.4 4.8 50 184-237 27-76 (99)
74 2lri_C Autoimmune regulator; Z 93.4 0.068 2.3E-06 40.3 3.8 44 184-231 11-59 (66)
75 2jun_A Midline-1; B-BOX, TRIM, 91.4 0.1 3.5E-06 41.4 2.7 33 185-217 3-35 (101)
76 1wil_A KIAA1045 protein; ring 90.3 0.19 6.4E-06 39.8 3.2 32 183-218 13-47 (89)
77 2kdx_A HYPA, hydrogenase/ureas 88.4 0.31 1.1E-05 40.4 3.4 34 5-41 71-105 (119)
78 2l5u_A Chromodomain-helicase-D 88.2 0.27 9.3E-06 36.1 2.6 44 183-230 9-57 (61)
79 1we9_A PHD finger family prote 87.0 0.17 5.8E-06 37.2 0.9 48 184-231 5-58 (64)
80 1mm2_A MI2-beta; PHD, zinc fin 84.1 0.37 1.3E-05 35.4 1.4 45 184-232 8-57 (61)
81 3lqh_A Histone-lysine N-methyl 84.1 0.59 2E-05 41.9 3.0 47 186-232 3-64 (183)
82 2k16_A Transcription initiatio 84.0 0.4 1.4E-05 36.3 1.7 49 185-234 18-71 (75)
83 3m62_A Ubiquitin conjugation f 80.8 1 3.4E-05 49.8 3.9 50 184-236 890-940 (968)
84 3o36_A Transcription intermedi 80.5 0.67 2.3E-05 40.9 2.0 45 184-232 3-52 (184)
85 1fp0_A KAP-1 corepressor; PHD 80.2 1.2 4.2E-05 35.3 3.2 46 183-232 23-73 (88)
86 1f62_A Transcription factor WS 80.2 0.88 3E-05 31.8 2.2 43 187-230 2-49 (51)
87 2yql_A PHD finger protein 21A; 79.9 0.33 1.1E-05 34.9 -0.2 44 183-230 7-55 (56)
88 2yt5_A Metal-response element- 79.1 0.49 1.7E-05 34.9 0.5 49 184-232 5-62 (66)
89 3u5n_A E3 ubiquitin-protein li 78.6 0.79 2.7E-05 41.3 1.9 45 184-232 6-55 (207)
90 3a43_A HYPD, hydrogenase nicke 78.2 1.1 3.6E-05 38.3 2.5 36 5-40 68-121 (139)
91 2puy_A PHD finger protein 21A; 78.2 0.26 8.7E-06 36.0 -1.3 47 184-234 4-55 (60)
92 1wev_A Riken cDNA 1110020M19; 77.8 0.65 2.2E-05 36.6 0.9 51 185-235 16-76 (88)
93 2ysm_A Myeloid/lymphoid or mix 77.5 0.9 3.1E-05 36.8 1.8 46 184-229 6-55 (111)
94 1xwh_A Autoimmune regulator; P 77.1 0.83 2.8E-05 33.9 1.3 44 184-231 7-55 (66)
95 2ct7_A Ring finger protein 31; 72.2 2.3 8E-05 33.0 2.8 36 5-41 23-58 (86)
96 1wep_A PHF8; structural genomi 71.9 2.6 8.8E-05 32.2 3.0 46 186-232 13-64 (79)
97 3v43_A Histone acetyltransfera 71.4 1.7 5.8E-05 35.5 1.9 45 186-230 62-111 (112)
98 3h0g_L DNA-directed RNA polyme 71.4 2.1 7.3E-05 31.9 2.3 35 5-41 19-53 (63)
99 1twf_L ABC10-alpha, DNA-direct 71.2 2.4 8.3E-05 32.2 2.6 33 5-39 26-58 (70)
100 2l43_A N-teminal domain from h 70.6 1.2 4E-05 35.1 0.7 53 183-235 23-79 (88)
101 2lbm_A Transcriptional regulat 70.5 3.6 0.00012 35.4 3.9 44 183-230 61-116 (142)
102 2ro1_A Transcription intermedi 69.7 1.3 4.5E-05 39.5 0.9 44 185-231 2-49 (189)
103 2kgg_A Histone demethylase jar 68.3 2.5 8.5E-05 29.8 2.0 43 187-229 4-52 (52)
104 3i2d_A E3 SUMO-protein ligase 67.1 7.2 0.00025 38.6 5.7 48 186-236 250-302 (371)
105 3v43_A Histone acetyltransfera 65.5 7.4 0.00025 31.5 4.6 46 184-229 4-62 (112)
106 3ql9_A Transcriptional regulat 65.4 6.1 0.00021 33.4 4.2 44 183-230 55-110 (129)
107 2ku3_A Bromodomain-containing 63.9 2.8 9.5E-05 31.7 1.6 48 183-230 14-65 (71)
108 2vpb_A Hpygo1, pygopus homolog 62.4 5 0.00017 29.8 2.7 32 185-216 8-41 (65)
109 2e6r_A Jumonji/ARID domain-con 61.9 1.5 5E-05 34.8 -0.3 47 184-231 15-66 (92)
110 2lv9_A Histone-lysine N-methyl 61.0 2.8 9.4E-05 33.5 1.2 43 186-230 29-75 (98)
111 2xb1_A Pygopus homolog 2, B-ce 59.1 5 0.00017 32.5 2.5 47 186-232 4-62 (105)
112 2ri7_A Nucleosome-remodeling f 58.6 2.1 7.2E-05 37.2 0.1 46 185-231 8-59 (174)
113 2con_A RUH-035 protein, NIN on 57.5 7.3 0.00025 30.3 3.0 32 7-42 15-46 (79)
114 1wee_A PHD finger family prote 56.1 2.1 7.2E-05 32.1 -0.3 45 186-231 17-66 (72)
115 1wen_A Inhibitor of growth fam 55.6 7 0.00024 29.4 2.6 43 185-232 16-66 (71)
116 3shb_A E3 ubiquitin-protein li 54.4 2.7 9.1E-05 32.4 0.0 43 187-230 28-76 (77)
117 2cu8_A Cysteine-rich protein 2 53.3 7.6 0.00026 28.6 2.4 41 185-235 9-49 (76)
118 2dj7_A Actin-binding LIM prote 52.4 9 0.00031 28.8 2.8 39 185-233 15-53 (80)
119 1weo_A Cellulose synthase, cat 51.3 48 0.0016 26.3 6.8 51 185-235 16-71 (93)
120 1weu_A Inhibitor of growth fam 50.3 12 0.0004 29.7 3.2 43 185-232 36-86 (91)
121 1wem_A Death associated transc 49.0 4.9 0.00017 30.3 0.8 44 186-231 17-70 (76)
122 2cs3_A Protein C14ORF4, MY039 49.0 8.4 0.00029 30.2 2.1 36 185-221 15-52 (93)
123 4gne_A Histone-lysine N-methyl 48.8 15 0.00052 29.9 3.8 47 183-235 13-66 (107)
124 2e6s_A E3 ubiquitin-protein li 48.6 4.9 0.00017 30.8 0.7 44 186-230 27-76 (77)
125 1iml_A CRIP, cysteine rich int 48.5 7.2 0.00025 28.7 1.6 38 187-234 2-39 (76)
126 3asl_A E3 ubiquitin-protein li 48.4 4.9 0.00017 30.1 0.7 43 187-230 20-68 (70)
127 4fo9_A E3 SUMO-protein ligase 47.3 12 0.00042 36.8 3.5 51 185-237 215-269 (360)
128 2co8_A NEDD9 interacting prote 46.0 13 0.00046 27.8 2.9 41 185-235 15-55 (82)
129 3o70_A PHD finger protein 13; 46.0 6.2 0.00021 29.4 0.9 44 185-230 19-66 (68)
130 4ayb_P DNA-directed RNA polyme 45.0 17 0.00059 25.5 3.0 37 6-42 2-39 (48)
131 2kwj_A Zinc finger protein DPF 44.7 10 0.00035 30.8 2.2 44 186-229 2-59 (114)
132 1dvp_A HRS, hepatocyte growth 43.8 20 0.00069 32.2 4.2 35 184-218 160-195 (220)
133 1zbd_B Rabphilin-3A; G protein 41.8 14 0.00048 31.2 2.6 33 184-216 54-88 (134)
134 3ask_A E3 ubiquitin-protein li 41.6 7.6 0.00026 35.9 0.9 44 186-230 175-224 (226)
135 1x64_A Alpha-actinin-2 associa 40.9 24 0.00082 26.7 3.6 41 184-235 24-64 (89)
136 1x63_A Skeletal muscle LIM-pro 40.8 23 0.00077 26.2 3.4 41 186-235 16-56 (82)
137 1a7i_A QCRP2 (LIM1); LIM domai 40.7 9.9 0.00034 28.3 1.3 40 186-235 8-47 (81)
138 2kwj_A Zinc finger protein DPF 38.9 2.7 9.1E-05 34.4 -2.3 47 186-233 59-110 (114)
139 2jne_A Hypothetical protein YF 38.8 15 0.00053 29.6 2.2 20 9-34 50-69 (101)
140 1y02_A CARP2, FYVE-ring finger 38.1 4.7 0.00016 33.6 -1.0 46 186-231 20-66 (120)
141 2b9d_A E7 protein; zinc finger 37.6 10 0.00035 27.1 0.9 26 9-34 10-49 (52)
142 1pft_A TFIIB, PFTFIIBN; N-term 37.1 16 0.00053 25.2 1.8 35 6-41 4-39 (50)
143 1x4k_A Skeletal muscle LIM-pro 36.8 27 0.00091 25.0 3.2 41 186-235 6-46 (72)
144 2d8x_A Protein pinch; LIM doma 36.5 23 0.00079 25.3 2.8 39 186-235 6-44 (70)
145 2ysm_A Myeloid/lymphoid or mix 36.3 6 0.00021 31.8 -0.6 43 187-230 56-103 (111)
146 1x68_A FHL5 protein; four-and- 36.3 23 0.0008 25.9 2.8 40 186-233 6-46 (76)
147 1x4l_A Skeletal muscle LIM-pro 36.1 21 0.00071 25.7 2.4 40 186-234 6-47 (72)
148 1wyh_A SLIM 2, skeletal muscle 35.6 27 0.00093 24.9 3.1 41 186-235 6-46 (72)
149 1wew_A DNA-binding family prot 35.2 11 0.00037 28.6 0.8 45 185-231 16-72 (78)
150 1x61_A Thyroid receptor intera 34.9 28 0.00096 24.9 3.0 39 186-233 6-44 (72)
151 1vfy_A Phosphatidylinositol-3- 34.9 24 0.00083 26.3 2.7 32 186-217 12-44 (73)
152 3zyq_A Hepatocyte growth facto 34.8 51 0.0018 29.8 5.4 49 184-232 163-220 (226)
153 1z2q_A LM5-1; membrane protein 34.0 28 0.00094 26.7 3.0 48 185-232 21-77 (84)
154 3t7l_A Zinc finger FYVE domain 34.0 24 0.00082 27.5 2.6 49 186-234 21-76 (90)
155 1joc_A EEA1, early endosomal a 33.9 23 0.00078 29.4 2.6 33 186-218 70-103 (125)
156 2d8y_A Eplin protein; LIM doma 33.9 26 0.0009 26.6 2.8 41 185-235 15-55 (91)
157 1v6g_A Actin binding LIM prote 33.8 30 0.001 25.5 3.1 39 186-235 16-54 (81)
158 2vnf_A ING 4, P29ING4, inhibit 33.2 7.5 0.00025 28.2 -0.5 40 186-230 11-58 (60)
159 2jrp_A Putative cytoplasmic pr 33.1 20 0.0007 27.9 2.0 24 7-36 18-41 (81)
160 1z60_A TFIIH basal transcripti 33.0 16 0.00053 26.8 1.3 42 186-228 16-58 (59)
161 1ryq_A DNA-directed RNA polyme 32.2 21 0.00071 27.0 1.8 21 8-35 12-32 (69)
162 3kv5_D JMJC domain-containing 32.1 9.5 0.00033 38.9 -0.0 45 186-231 38-88 (488)
163 1wfk_A Zinc finger, FYVE domai 31.3 33 0.0011 26.6 3.0 51 185-235 9-67 (88)
164 2yw8_A RUN and FYVE domain-con 31.3 30 0.001 26.4 2.7 33 186-218 20-53 (82)
165 2cor_A Pinch protein; LIM doma 30.7 31 0.0011 25.6 2.7 40 185-235 15-54 (79)
166 2dar_A PDZ and LIM domain prot 30.7 27 0.00091 26.5 2.4 40 185-235 25-64 (90)
167 3mpx_A FYVE, rhogef and PH dom 30.4 11 0.00037 36.9 0.0 48 185-232 375-430 (434)
168 2l4z_A DNA endonuclease RBBP8, 30.3 23 0.00077 29.0 2.0 39 185-233 61-99 (123)
169 2jmi_A Protein YNG1, ING1 homo 30.1 16 0.00054 28.9 0.9 41 185-230 26-75 (90)
170 1x4u_A Zinc finger, FYVE domai 30.0 33 0.0011 26.2 2.8 31 186-216 15-46 (84)
171 2jvm_A Uncharacterized protein 29.8 16 0.00056 28.4 1.0 19 23-41 50-68 (80)
172 2k2d_A Ring finger and CHY zin 29.6 27 0.00093 26.8 2.2 34 7-41 37-70 (79)
173 2jz8_A Uncharacterized protein 29.2 17 0.00057 28.7 0.9 18 23-40 45-62 (87)
174 2cur_A Skeletal muscle LIM-pro 28.9 37 0.0013 24.1 2.8 38 186-234 6-43 (69)
175 3kqi_A GRC5, PHD finger protei 28.9 15 0.00052 27.5 0.6 47 185-231 9-61 (75)
176 2a20_A Regulating synaptic mem 28.9 5.5 0.00019 29.4 -1.7 50 181-230 5-59 (62)
177 1x62_A C-terminal LIM domain p 28.6 36 0.0012 25.1 2.7 39 185-234 15-53 (79)
178 1zfo_A LAsp-1; LIM domain, zin 28.6 16 0.00056 22.8 0.6 28 186-215 4-31 (31)
179 2jvx_A NF-kappa-B essential mo 28.5 13 0.00044 23.3 0.1 13 223-235 4-16 (28)
180 3f6q_B LIM and senescent cell 28.5 29 0.00099 24.6 2.1 42 185-235 11-52 (72)
181 2zet_C Melanophilin; complex, 28.3 24 0.00081 30.5 1.9 46 184-230 67-116 (153)
182 2ewl_A Protein E7; HPV, oncopr 28.1 9.9 0.00034 27.6 -0.5 25 9-33 15-53 (56)
183 2l3k_A Rhombotin-2, linker, LI 27.8 24 0.00081 28.5 1.7 37 187-232 10-46 (123)
184 2rsd_A E3 SUMO-protein ligase 27.2 6.9 0.00024 28.9 -1.6 43 186-230 11-64 (68)
185 3a1b_A DNA (cytosine-5)-methyl 26.9 36 0.0012 29.7 2.8 42 184-229 78-132 (159)
186 1m3v_A FLIN4, fusion of the LI 26.8 47 0.0016 26.7 3.3 49 186-235 33-82 (122)
187 2ku7_A MLL1 PHD3-CYP33 RRM chi 26.7 82 0.0028 24.9 4.8 25 206-230 8-43 (140)
188 2d8z_A Four and A half LIM dom 26.4 45 0.0015 23.6 2.9 38 186-234 6-43 (70)
189 1nyp_A Pinch protein; LIM doma 26.3 37 0.0013 23.8 2.4 38 186-234 6-43 (66)
190 1g47_A Pinch protein; LIM doma 26.0 51 0.0018 23.7 3.2 42 185-235 11-52 (77)
191 2ida_A Hypothetical protein; z 25.8 26 0.00088 28.3 1.5 15 5-19 73-87 (102)
192 2gmg_A Hypothetical protein PF 25.0 35 0.0012 27.8 2.1 32 6-39 66-97 (105)
193 3o7a_A PHD finger protein 13 v 24.8 19 0.00066 25.0 0.5 40 190-230 8-51 (52)
194 1vd4_A Transcription initiatio 24.0 39 0.0013 23.2 2.1 36 5-41 12-54 (62)
195 2dlo_A Thyroid receptor-intera 23.9 48 0.0016 24.4 2.6 40 185-235 15-54 (81)
196 1wd2_A Ariadne-1 protein homol 23.1 23 0.00078 25.7 0.6 35 186-220 7-46 (60)
197 1wfh_A Zinc finger (AN1-like) 22.8 34 0.0011 25.5 1.5 27 6-38 14-40 (64)
198 3c5k_A HD6, histone deacetylas 22.8 22 0.00076 28.9 0.6 16 4-19 71-86 (109)
199 1x6a_A LIMK-2, LIM domain kina 22.2 45 0.0015 24.4 2.2 38 186-234 16-53 (81)
200 2jrr_A Uncharacterized protein 22.1 20 0.00067 27.0 0.1 17 24-40 38-54 (67)
201 1x3h_A Leupaxin; paxillin fami 22.0 57 0.0019 23.7 2.7 39 186-235 16-54 (80)
202 1dx8_A Rubredoxin; electron tr 21.5 65 0.0022 24.1 2.9 34 1-34 1-48 (70)
203 3fyb_A Protein of unknown func 21.4 32 0.0011 27.9 1.2 12 209-220 41-52 (104)
204 2o35_A Hypothetical protein DU 21.4 32 0.0011 27.9 1.2 12 209-220 42-53 (105)
205 1wg2_A Zinc finger (AN1-like) 20.7 25 0.00085 26.2 0.4 28 6-39 14-41 (64)
206 2cup_A Skeletal muscle LIM-pro 20.6 62 0.0021 24.6 2.8 11 186-196 6-16 (101)
207 1wfp_A Zinc finger (AN1-like) 20.5 31 0.0011 26.4 0.9 28 5-38 23-50 (74)
208 3c6w_A P28ING5, inhibitor of g 20.5 18 0.00061 26.1 -0.4 41 185-230 9-57 (59)
209 2xqn_T Testin, TESS; metal-bin 20.2 65 0.0022 25.6 2.9 45 186-234 31-75 (126)
210 3axs_A Probable N(2),N(2)-dime 20.1 49 0.0017 32.6 2.5 32 6-37 243-274 (392)
No 1
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=99.67 E-value=6.9e-17 Score=130.04 Aligned_cols=76 Identities=37% Similarity=0.892 Sum_probs=67.6
Q ss_pred ccCCCCCHHHHhcCCceeeeccc--ccCCCcccccCCccccCCCeEEccccCccchhhHHHHHhcCCCCCccCccCCC
Q 017269 159 FVNPPASKAAIESMPVVTIAESH--VAKESHCAVCKEPFQLNSEAREMPCKHIYHGECILPWLSMRNSCPLCRRELPN 234 (374)
Q Consensus 159 ~~~ppas~~~i~~lp~~~~~~~~--~~~~~~C~ICle~f~~~~~~~~lpC~H~FH~~CI~~WL~~~~sCPvCR~~l~~ 234 (374)
....+++++.|+.||.+++.... ...+..|+||++.|..++.++.|||+|.||..||..||+.+.+||+||..++.
T Consensus 12 ~~~~~~s~~~i~~lp~~~~~~~~~~~~~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 12 VANPPASKESIDALPEILVTEDHGAVGQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQKSGTCPVCRCMFPP 89 (91)
T ss_dssp SCCCCCCHHHHHTSCEEECCTTCSSSSSCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTTTCBCTTTCCBSSC
T ss_pred cCCCCCCHHHHHhCCCeeecccccccCCCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHcCCcCcCcCccCCC
Confidence 56789999999999999887654 33467899999999988889999999999999999999999999999998865
No 2
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.59 E-value=3.5e-16 Score=120.88 Aligned_cols=70 Identities=24% Similarity=0.683 Sum_probs=59.3
Q ss_pred HHHHhcCCceeeeccc-ccCCCcccccCCccccCCCeEEccccCccchhhHHHHHhcCCCCCccCccCCCC
Q 017269 166 KAAIESMPVVTIAESH-VAKESHCAVCKEPFQLNSEAREMPCKHIYHGECILPWLSMRNSCPLCRRELPNE 235 (374)
Q Consensus 166 ~~~i~~lp~~~~~~~~-~~~~~~C~ICle~f~~~~~~~~lpC~H~FH~~CI~~WL~~~~sCPvCR~~l~~~ 235 (374)
.+.++.||.+++.... ...+..|+||+++|..++.++.|||+|.||..||.+||+.+.+||+||+++...
T Consensus 3 ~~~i~~lp~~~~~~~~~~~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~~ 73 (75)
T 1x4j_A 3 SGSSGQLPSYRFNPNNHQSEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRADSGPS 73 (75)
T ss_dssp CCCCSSCCCEEBCSSSCSSSCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHHCSSCTTTCCCCCCC
T ss_pred HhhHhhCCcEEecCccccCCCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHcCCcCcCcCCcCCCC
Confidence 3456778888876543 334688999999999888889999999999999999999999999999988654
No 3
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.49 E-value=2.2e-14 Score=110.12 Aligned_cols=55 Identities=38% Similarity=0.870 Sum_probs=49.2
Q ss_pred cCCCcccccCCccccCCCeEEccccCccchhhHHHHHhcCCCCCccCccCCCCCC
Q 017269 183 AKESHCAVCKEPFQLNSEAREMPCKHIYHGECILPWLSMRNSCPLCRRELPNEAN 237 (374)
Q Consensus 183 ~~~~~C~ICle~f~~~~~~~~lpC~H~FH~~CI~~WL~~~~sCPvCR~~l~~~~~ 237 (374)
..+..|+||++.|.....+..|+|+|.||..||..|++.+.+||+||.++.....
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 67 (74)
T 2ep4_A 13 NLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKVCPLCNMPVLQLAQ 67 (74)
T ss_dssp CCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHCSBCTTTCCBCSSCCS
T ss_pred CCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcCCcCCCcCcccccccc
Confidence 3467899999999988888999999999999999999999999999999876533
No 4
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.49 E-value=3.2e-14 Score=110.32 Aligned_cols=56 Identities=41% Similarity=1.112 Sum_probs=50.0
Q ss_pred ccCCCcccccCCccccCCCeEEccccCccchhhHHHHHhcCCCCCccCccCCCCCC
Q 017269 182 VAKESHCAVCKEPFQLNSEAREMPCKHIYHGECILPWLSMRNSCPLCRRELPNEAN 237 (374)
Q Consensus 182 ~~~~~~C~ICle~f~~~~~~~~lpC~H~FH~~CI~~WL~~~~sCPvCR~~l~~~~~ 237 (374)
...+..|+||++.|.....++.|+|+|.||..||..|++.+.+||+||.++.....
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 67 (78)
T 2ect_A 12 VGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSLTGQNT 67 (78)
T ss_dssp SSSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTTTCSCTTTCCCCCCSCS
T ss_pred CCCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHcCCcCcCcCCccCCccc
Confidence 34568899999999988888999999999999999999999999999999877644
No 5
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.48 E-value=2e-14 Score=104.17 Aligned_cols=51 Identities=39% Similarity=0.882 Sum_probs=46.6
Q ss_pred cCCCcccccCCccccCCCeEEcc-ccCccchhhHHHHHhcCCCCCccCccCC
Q 017269 183 AKESHCAVCKEPFQLNSEAREMP-CKHIYHGECILPWLSMRNSCPLCRRELP 233 (374)
Q Consensus 183 ~~~~~C~ICle~f~~~~~~~~lp-C~H~FH~~CI~~WL~~~~sCPvCR~~l~ 233 (374)
+.+..|+||++.|+.++.+..++ |+|.||..||.+|++.+.+||+||.+++
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~ 54 (55)
T 1iym_A 3 DDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV 54 (55)
T ss_dssp CCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred CCCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcCCcCcCCCCEeE
Confidence 34578999999999888899998 9999999999999999999999999875
No 6
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.48 E-value=3.3e-14 Score=107.76 Aligned_cols=54 Identities=28% Similarity=0.876 Sum_probs=48.8
Q ss_pred cCCCcccccCCccccCCCeEEccccCccchhhHHHHHhcCCCCCccCccCCCCC
Q 017269 183 AKESHCAVCKEPFQLNSEAREMPCKHIYHGECILPWLSMRNSCPLCRRELPNEA 236 (374)
Q Consensus 183 ~~~~~C~ICle~f~~~~~~~~lpC~H~FH~~CI~~WL~~~~sCPvCR~~l~~~~ 236 (374)
..+..|+||++.|..++.++.++|+|.||..||..|++.+.+||+||..+....
T Consensus 12 ~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 65 (69)
T 2kiz_A 12 DTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDIEAQL 65 (69)
T ss_dssp TCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHHCSBCTTTCSBSCSCC
T ss_pred CCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHcCCCCcCcCccccCcC
Confidence 345789999999988888999999999999999999999999999999987763
No 7
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=99.38 E-value=2.9e-13 Score=112.20 Aligned_cols=53 Identities=26% Similarity=0.610 Sum_probs=43.4
Q ss_pred CCCcccccCCccccCC---------------CeEEccccCccchhhHHHHH-----hcCCCCCccCccCCCCC
Q 017269 184 KESHCAVCKEPFQLNS---------------EAREMPCKHIYHGECILPWL-----SMRNSCPLCRRELPNEA 236 (374)
Q Consensus 184 ~~~~C~ICle~f~~~~---------------~~~~lpC~H~FH~~CI~~WL-----~~~~sCPvCR~~l~~~~ 236 (374)
.+..|+||++.|.... .++.++|+|.||..||..|| +.+.+||+||..+....
T Consensus 24 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~~ 96 (114)
T 1v87_A 24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEKT 96 (114)
T ss_dssp CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSCS
T ss_pred CCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCCCC
Confidence 3568999999996543 34578899999999999999 45679999999887653
No 8
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.38 E-value=2.2e-13 Score=107.38 Aligned_cols=51 Identities=25% Similarity=0.682 Sum_probs=42.4
Q ss_pred CCcccccCCcccc-----------CCCeEEcc-ccCccchhhHHHHHhcCCCCCccCccCCCC
Q 017269 185 ESHCAVCKEPFQL-----------NSEAREMP-CKHIYHGECILPWLSMRNSCPLCRRELPNE 235 (374)
Q Consensus 185 ~~~C~ICle~f~~-----------~~~~~~lp-C~H~FH~~CI~~WL~~~~sCPvCR~~l~~~ 235 (374)
+..|+||+++|+. ++.++.++ |+|.||.+||.+||+.+++||+||+++...
T Consensus 15 ~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~~ 77 (81)
T 2ecl_A 15 CDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWVVQ 77 (81)
T ss_dssp CSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCCBCTTTCCBCCEE
T ss_pred CCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCCCCCCcCCCcchh
Confidence 4678888888753 44566776 999999999999999999999999988654
No 9
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.36 E-value=3.7e-13 Score=97.23 Aligned_cols=50 Identities=30% Similarity=0.659 Sum_probs=43.7
Q ss_pred CCCcccccCCccccC-CCeEEccccCccchhhHHHHHhcCCCCCccCccCC
Q 017269 184 KESHCAVCKEPFQLN-SEAREMPCKHIYHGECILPWLSMRNSCPLCRRELP 233 (374)
Q Consensus 184 ~~~~C~ICle~f~~~-~~~~~lpC~H~FH~~CI~~WL~~~~sCPvCR~~l~ 233 (374)
.+..|+||++.|..+ +.++.++|+|.||..||..|++.+.+||+||.++.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLCSGPSS 54 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHTCCCTTSCCSSC
T ss_pred CCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcCCcCCCCCCcCC
Confidence 357899999998654 45788999999999999999998899999999875
No 10
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=99.34 E-value=6.1e-13 Score=110.66 Aligned_cols=51 Identities=31% Similarity=0.619 Sum_probs=43.7
Q ss_pred CCCcccccCCccccC---------------CCeEEccccCccchhhHHHHHhcCCCCCccCccCCC
Q 017269 184 KESHCAVCKEPFQLN---------------SEAREMPCKHIYHGECILPWLSMRNSCPLCRRELPN 234 (374)
Q Consensus 184 ~~~~C~ICle~f~~~---------------~~~~~lpC~H~FH~~CI~~WL~~~~sCPvCR~~l~~ 234 (374)
.++.|+||++.|+.. ..+..++|+|.||..||.+||+.+.+||+||+++..
T Consensus 36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~~ 101 (106)
T 3dpl_R 36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWEF 101 (106)
T ss_dssp CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTCSBCSSSCSBCCE
T ss_pred CCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHcCCcCcCCCCccee
Confidence 468899999998753 136778899999999999999999999999998643
No 11
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.33 E-value=7.9e-13 Score=99.36 Aligned_cols=52 Identities=21% Similarity=0.634 Sum_probs=44.6
Q ss_pred cCCCcccccCCccccC----CCeEEccccCccchhhHHHHHhcCCCCCccCccCCC
Q 017269 183 AKESHCAVCKEPFQLN----SEAREMPCKHIYHGECILPWLSMRNSCPLCRRELPN 234 (374)
Q Consensus 183 ~~~~~C~ICle~f~~~----~~~~~lpC~H~FH~~CI~~WL~~~~sCPvCR~~l~~ 234 (374)
..+..|+||++.|... ..++.++|+|.||..||..|++.+.+||+||.++..
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 13 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH 68 (69)
T ss_dssp TCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHHCSSCTTTCCCCCC
T ss_pred CCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHcCCCCCCCCCccCc
Confidence 3467899999998753 345889999999999999999999999999998754
No 12
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.31 E-value=9.1e-13 Score=99.86 Aligned_cols=54 Identities=20% Similarity=0.634 Sum_probs=46.2
Q ss_pred cCCCcccccCCcccc----CCCeEEccccCccchhhHHHHHhcCCCCCccCccCCCCC
Q 017269 183 AKESHCAVCKEPFQL----NSEAREMPCKHIYHGECILPWLSMRNSCPLCRRELPNEA 236 (374)
Q Consensus 183 ~~~~~C~ICle~f~~----~~~~~~lpC~H~FH~~CI~~WL~~~~sCPvCR~~l~~~~ 236 (374)
..+..|+||++.|.. +..++.++|+|.||..||.+|++.+.+||+||.++...+
T Consensus 8 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 65 (71)
T 3ng2_A 8 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKR 65 (71)
T ss_dssp TTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCCCS
T ss_pred CCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcCCCCCCCCCccChhh
Confidence 345789999999865 245588999999999999999999999999999987653
No 13
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.30 E-value=1.8e-12 Score=102.61 Aligned_cols=55 Identities=25% Similarity=0.610 Sum_probs=45.8
Q ss_pred CCCcccccCCccccCCCeEEcccc-----CccchhhHHHHHhcC--CCCCccCccCCCCCCCC
Q 017269 184 KESHCAVCKEPFQLNSEAREMPCK-----HIYHGECILPWLSMR--NSCPLCRRELPNEANDR 239 (374)
Q Consensus 184 ~~~~C~ICle~f~~~~~~~~lpC~-----H~FH~~CI~~WL~~~--~sCPvCR~~l~~~~~~~ 239 (374)
.+..|.||+++|+.++.+ ++||+ |.||.+||.+||+.+ .+||+||+++..+....
T Consensus 14 ~~~~C~IC~~~~~~~~~l-~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~~~~~~ 75 (80)
T 2d8s_A 14 SQDICRICHCEGDDESPL-ITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIMETKLS 75 (80)
T ss_dssp TSCCCSSSCCCCCSSSCE-ECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCCCCCSC
T ss_pred CCCCCeEcCccccCCCee-EeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeecCcccC
Confidence 457899999999877665 69997 999999999999765 48999999998765443
No 14
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.28 E-value=9.7e-13 Score=100.50 Aligned_cols=51 Identities=27% Similarity=0.687 Sum_probs=44.5
Q ss_pred CCCcccccCCccccCCCeEEccccCccchhhHHHHHhcCCCCCccCccCCCCCC
Q 017269 184 KESHCAVCKEPFQLNSEAREMPCKHIYHGECILPWLSMRNSCPLCRRELPNEAN 237 (374)
Q Consensus 184 ~~~~C~ICle~f~~~~~~~~lpC~H~FH~~CI~~WL~~~~sCPvCR~~l~~~~~ 237 (374)
.+..|+||++.+. +.+.++|+|.||..||..|++.+.+||+||..+.....
T Consensus 14 ~~~~C~IC~~~~~---~~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 64 (71)
T 2d8t_A 14 TVPECAICLQTCV---HPVSLPCKHVFCYLCVKGASWLGKRCALCRQEIPEDFL 64 (71)
T ss_dssp SCCBCSSSSSBCS---SEEEETTTEEEEHHHHHHCTTCSSBCSSSCCBCCHHHH
T ss_pred CCCCCccCCcccC---CCEEccCCCHHHHHHHHHHHHCCCcCcCcCchhCHhhc
Confidence 4578999999875 56788999999999999999999999999999876543
No 15
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.28 E-value=1.5e-12 Score=96.34 Aligned_cols=51 Identities=22% Similarity=0.642 Sum_probs=44.6
Q ss_pred CCcccccCCccccC----CCeEEccccCccchhhHHHHHhcCCCCCccCccCCCC
Q 017269 185 ESHCAVCKEPFQLN----SEAREMPCKHIYHGECILPWLSMRNSCPLCRRELPNE 235 (374)
Q Consensus 185 ~~~C~ICle~f~~~----~~~~~lpC~H~FH~~CI~~WL~~~~sCPvCR~~l~~~ 235 (374)
+..|+||++.+... ..+..++|+|.||..||..|++.+.+||+||.++...
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 57 (64)
T 2xeu_A 3 MVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHK 57 (64)
T ss_dssp CCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHHCSBCTTTCCBCTTT
T ss_pred CCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHcCCCCCCCCccCCcc
Confidence 57899999998742 4557889999999999999999999999999998765
No 16
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.26 E-value=4.3e-12 Score=95.59 Aligned_cols=50 Identities=26% Similarity=0.722 Sum_probs=43.7
Q ss_pred CCCcccccCCccccCCCeEEccccCccchhhHHHHHhcCCCCCccCccCCCC
Q 017269 184 KESHCAVCKEPFQLNSEAREMPCKHIYHGECILPWLSMRNSCPLCRRELPNE 235 (374)
Q Consensus 184 ~~~~C~ICle~f~~~~~~~~lpC~H~FH~~CI~~WL~~~~sCPvCR~~l~~~ 235 (374)
.+..|+||++.+. +.++.++|+|.||..||..|++.+.+||+||..+...
T Consensus 4 ~~~~C~IC~~~~~--~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 53 (68)
T 1chc_A 4 VAERCPICLEDPS--NYSMALPCLHAFCYVCITRWIRQNPTCPLCKVPVESV 53 (68)
T ss_dssp CCCCCSSCCSCCC--SCEEETTTTEEESTTHHHHHHHHSCSTTTTCCCCCCE
T ss_pred CCCCCeeCCcccc--CCcEecCCCCeeHHHHHHHHHhCcCcCcCCChhhHhh
Confidence 3578999999976 3468899999999999999999999999999998654
No 17
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.26 E-value=4.7e-12 Score=96.90 Aligned_cols=53 Identities=23% Similarity=0.489 Sum_probs=44.5
Q ss_pred cCCCcccccCCccccCCCeEEc-cccCccchhhHHHHHhcCCCCCccCccCCCCCCC
Q 017269 183 AKESHCAVCKEPFQLNSEAREM-PCKHIYHGECILPWLSMRNSCPLCRRELPNEAND 238 (374)
Q Consensus 183 ~~~~~C~ICle~f~~~~~~~~l-pC~H~FH~~CI~~WL~~~~sCPvCR~~l~~~~~~ 238 (374)
..+..|+||++.|.. .+.+ +|+|.||..||..|++.+..||+||..+...+..
T Consensus 13 ~~~~~C~IC~~~~~~---p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~ 66 (72)
T 2djb_A 13 TPYILCSICKGYLID---ATTITECLHTFCKSCIVRHFYYSNRCPKCNIVVHQTQPL 66 (72)
T ss_dssp CGGGSCTTTSSCCSS---CEECSSSCCEECHHHHHHHHHHCSSCTTTCCCCCSSCSC
T ss_pred CCCCCCCCCChHHHC---cCEECCCCCHHHHHHHHHHHHcCCcCCCcCcccCccccc
Confidence 345789999998863 4555 8999999999999999999999999998776443
No 18
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.26 E-value=1.7e-12 Score=98.43 Aligned_cols=50 Identities=26% Similarity=0.755 Sum_probs=44.0
Q ss_pred cCCCcccccCCccccCCCeEEccccCccchhhHHHHHhcCCCCCccCccCCCCC
Q 017269 183 AKESHCAVCKEPFQLNSEAREMPCKHIYHGECILPWLSMRNSCPLCRRELPNEA 236 (374)
Q Consensus 183 ~~~~~C~ICle~f~~~~~~~~lpC~H~FH~~CI~~WL~~~~sCPvCR~~l~~~~ 236 (374)
..+..|+||++.+.. +.++|+|.||..||..|++.+.+||+||.++...+
T Consensus 13 ~~~~~C~IC~~~~~~----~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 62 (70)
T 2ecn_A 13 TDEEECCICMDGRAD----LILPCAHSFCQKCIDKWSDRHRNCPICRLQMTGAN 62 (70)
T ss_dssp CCCCCCSSSCCSCCS----EEETTTEEECHHHHHHSSCCCSSCHHHHHCTTCCC
T ss_pred CCCCCCeeCCcCccC----cccCCCCcccHHHHHHHHHCcCcCCCcCCcccCCC
Confidence 345789999999864 78999999999999999999999999999987653
No 19
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.21 E-value=1.2e-11 Score=97.35 Aligned_cols=54 Identities=20% Similarity=0.527 Sum_probs=45.9
Q ss_pred ccCCCcccccCCccccCCC-eEEccccCccchhhHHHHHhcC---CCCCccCccCCCC
Q 017269 182 VAKESHCAVCKEPFQLNSE-AREMPCKHIYHGECILPWLSMR---NSCPLCRRELPNE 235 (374)
Q Consensus 182 ~~~~~~C~ICle~f~~~~~-~~~lpC~H~FH~~CI~~WL~~~---~sCPvCR~~l~~~ 235 (374)
+..+..|+||++.|...+. .+.++|+|.||..||..|++.+ ..||+||..+...
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 69 (88)
T 2ct2_A 12 LREVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRIT 69 (88)
T ss_dssp CCSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCS
T ss_pred ccCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccch
Confidence 4456889999999986554 7889999999999999999875 6899999987654
No 20
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.19 E-value=1.7e-11 Score=94.53 Aligned_cols=51 Identities=29% Similarity=0.656 Sum_probs=42.7
Q ss_pred cCCCcccccCCccccCCCeEEcc-ccCccchhhHHHHHhcC--CCCCccCccCCCCC
Q 017269 183 AKESHCAVCKEPFQLNSEAREMP-CKHIYHGECILPWLSMR--NSCPLCRRELPNEA 236 (374)
Q Consensus 183 ~~~~~C~ICle~f~~~~~~~~lp-C~H~FH~~CI~~WL~~~--~sCPvCR~~l~~~~ 236 (374)
..+..|+||++.|. +.+.++ |+|.||..||..|++.+ .+||+||.++...+
T Consensus 13 ~~~~~C~IC~~~~~---~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~ 66 (74)
T 2yur_A 13 PDELLCLICKDIMT---DAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPD 66 (74)
T ss_dssp CGGGSCSSSCCCCT---TCEECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCCTT
T ss_pred CCCCCCcCCChHHh---CCeEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCCcc
Confidence 34578999999886 567799 99999999999999865 68999999765543
No 21
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.18 E-value=1.6e-11 Score=95.99 Aligned_cols=54 Identities=19% Similarity=0.480 Sum_probs=44.0
Q ss_pred CCCcccccCCccccCCCeEEccccCccchhhHHHHHhcC--CCCCccCccCCCCCCCC
Q 017269 184 KESHCAVCKEPFQLNSEAREMPCKHIYHGECILPWLSMR--NSCPLCRRELPNEANDR 239 (374)
Q Consensus 184 ~~~~C~ICle~f~~~~~~~~lpC~H~FH~~CI~~WL~~~--~sCPvCR~~l~~~~~~~ 239 (374)
....|+||++.+..++.. ..|+|.||.+||.+||+.+ .+||+||.+++.+..+.
T Consensus 14 ~i~~C~IC~~~i~~g~~C--~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~~~~~~ 69 (74)
T 2ct0_A 14 AVKICNICHSLLIQGQSC--ETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHEIPKS 69 (74)
T ss_dssp SSCBCSSSCCBCSSSEEC--SSSCCEECHHHHHHHSTTCSSCCCTTTCSCCCSCCCCC
T ss_pred CCCcCcchhhHcccCCcc--CCCCchhhHHHHHHHHHhcCCCCCCCCcCcCCCCCCCC
Confidence 347899999999865422 3699999999999999877 79999999998765443
No 22
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.17 E-value=2e-11 Score=93.04 Aligned_cols=50 Identities=24% Similarity=0.561 Sum_probs=42.7
Q ss_pred cCCCcccccCCccccCCCeEEccccCccchhhHHHHHh---cCCCCCccCccCCCC
Q 017269 183 AKESHCAVCKEPFQLNSEAREMPCKHIYHGECILPWLS---MRNSCPLCRRELPNE 235 (374)
Q Consensus 183 ~~~~~C~ICle~f~~~~~~~~lpC~H~FH~~CI~~WL~---~~~sCPvCR~~l~~~ 235 (374)
..+..|+||++.|. +.+.++|+|.||..||..|++ .+..||+||.++..+
T Consensus 18 ~~~~~C~IC~~~~~---~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 70 (73)
T 2ysl_A 18 QEEVICPICLDILQ---KPVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRKN 70 (73)
T ss_dssp CCCCBCTTTCSBCS---SEEECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCC
T ss_pred ccCCEeccCCcccC---CeEEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCcc
Confidence 44678999999886 577889999999999999997 455899999998765
No 23
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.16 E-value=1.9e-11 Score=95.49 Aligned_cols=48 Identities=21% Similarity=0.597 Sum_probs=42.6
Q ss_pred cCCCcccccCCccccCCCeEEccccCccchhhHHHHHhcCCCCCccCccCC
Q 017269 183 AKESHCAVCKEPFQLNSEAREMPCKHIYHGECILPWLSMRNSCPLCRRELP 233 (374)
Q Consensus 183 ~~~~~C~ICle~f~~~~~~~~lpC~H~FH~~CI~~WL~~~~sCPvCR~~l~ 233 (374)
.....|+||++.|. ..++++|+|.||..||..|++....||+||..+.
T Consensus 13 ~~~~~C~IC~~~~~---~p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 60 (81)
T 2csy_A 13 EIPFRCFICRQAFQ---NPVVTKCRHYFCESCALEHFRATPRCYICDQPTG 60 (81)
T ss_dssp CCCSBCSSSCSBCC---SEEECTTSCEEEHHHHHHHHHHCSBCSSSCCBCC
T ss_pred CCCCCCcCCCchhc---CeeEccCCCHhHHHHHHHHHHCCCcCCCcCcccc
Confidence 34578999999985 4678999999999999999999999999999986
No 24
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=99.15 E-value=3.6e-12 Score=107.91 Aligned_cols=51 Identities=31% Similarity=0.619 Sum_probs=1.0
Q ss_pred CCCcccccCCccccC-------------C--CeEEccccCccchhhHHHHHhcCCCCCccCccCCC
Q 017269 184 KESHCAVCKEPFQLN-------------S--EAREMPCKHIYHGECILPWLSMRNSCPLCRRELPN 234 (374)
Q Consensus 184 ~~~~C~ICle~f~~~-------------~--~~~~lpC~H~FH~~CI~~WL~~~~sCPvCR~~l~~ 234 (374)
.++.|+||+++|+.. + .+..++|+|.||.+||.+||+.+.+||+||.++..
T Consensus 47 ~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~~~~ 112 (117)
T 4a0k_B 47 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWEF 112 (117)
T ss_dssp CC----------------------------------------------------------------
T ss_pred CCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcCCcCCCCCCeeee
Confidence 457899999999752 2 23335799999999999999999999999998654
No 25
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.14 E-value=2.1e-11 Score=91.56 Aligned_cols=50 Identities=18% Similarity=0.554 Sum_probs=41.8
Q ss_pred cCCCcccccCCccccCCCeEEccccCccchhhHHHHHh-cCCCCCccCccCCCC
Q 017269 183 AKESHCAVCKEPFQLNSEAREMPCKHIYHGECILPWLS-MRNSCPLCRRELPNE 235 (374)
Q Consensus 183 ~~~~~C~ICle~f~~~~~~~~lpC~H~FH~~CI~~WL~-~~~sCPvCR~~l~~~ 235 (374)
..+..|+||++.+. +...++|+|.||..||..|++ .+..||+||.++..+
T Consensus 13 ~~~~~C~IC~~~~~---~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 63 (66)
T 2ecy_A 13 EDKYKCEKCHLVLC---SPKQTECGHRFCESCMAALLSSSSPKCTACQESIVKD 63 (66)
T ss_dssp CCCEECTTTCCEES---SCCCCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCTT
T ss_pred CcCCCCCCCChHhc---CeeECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCChh
Confidence 34578999999986 344589999999999999994 567899999998765
No 26
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.13 E-value=1.9e-11 Score=105.25 Aligned_cols=48 Identities=33% Similarity=0.913 Sum_probs=43.0
Q ss_pred CCcccccCCccccCCCeEEccccCccchhhHHHHHhcCCCCCccCccCCCC
Q 017269 185 ESHCAVCKEPFQLNSEAREMPCKHIYHGECILPWLSMRNSCPLCRRELPNE 235 (374)
Q Consensus 185 ~~~C~ICle~f~~~~~~~~lpC~H~FH~~CI~~WL~~~~sCPvCR~~l~~~ 235 (374)
+..|+||++.|. .++.+||+|.||..||..|+..+.+||+||.++...
T Consensus 53 ~~~C~iC~~~~~---~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 100 (138)
T 4ayc_A 53 ELQCIICSEYFI---EAVTLNCAHSFCSYCINEWMKRKIECPICRKDIKSK 100 (138)
T ss_dssp HSBCTTTCSBCS---SEEEETTSCEEEHHHHHHHTTTCSBCTTTCCBCCCE
T ss_pred cCCCcccCcccC---CceECCCCCCccHHHHHHHHHcCCcCCCCCCcCCCC
Confidence 467999999886 578899999999999999999999999999988654
No 27
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.12 E-value=4.7e-11 Score=92.29 Aligned_cols=51 Identities=18% Similarity=0.428 Sum_probs=44.0
Q ss_pred ccCCCcccccCCccccCCCeEEccccCccchhhHHHHHhc-CCCCCccCccCCCC
Q 017269 182 VAKESHCAVCKEPFQLNSEAREMPCKHIYHGECILPWLSM-RNSCPLCRRELPNE 235 (374)
Q Consensus 182 ~~~~~~C~ICle~f~~~~~~~~lpC~H~FH~~CI~~WL~~-~~sCPvCR~~l~~~ 235 (374)
+..+..|+||++.|. +.+.++|+|.||..||..|++. +.+||+||.++...
T Consensus 5 ~~~~~~C~IC~~~~~---~Pv~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~~ 56 (78)
T 1t1h_A 5 FPEYFRCPISLELMK---DPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHA 56 (78)
T ss_dssp CSSSSSCTTTSCCCS---SEEEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSSC
T ss_pred CcccCCCCCcccccc---CCEEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCChh
Confidence 345688999999886 5678899999999999999986 77999999988655
No 28
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.09 E-value=9.8e-11 Score=90.98 Aligned_cols=50 Identities=28% Similarity=0.678 Sum_probs=42.9
Q ss_pred cCCCcccccCCccccCCCeEEccccCccchhhHHHHHhc------CCCCCccCccCCCC
Q 017269 183 AKESHCAVCKEPFQLNSEAREMPCKHIYHGECILPWLSM------RNSCPLCRRELPNE 235 (374)
Q Consensus 183 ~~~~~C~ICle~f~~~~~~~~lpC~H~FH~~CI~~WL~~------~~sCPvCR~~l~~~ 235 (374)
..+..|+||++.|. ..+.++|+|.||..||..|++. ...||+||..+..+
T Consensus 17 ~~~~~C~IC~~~~~---~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~ 72 (85)
T 2ecw_A 17 KEEVTCPICLELLK---EPVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFG 72 (85)
T ss_dssp CTTTSCTTTCSCCS---SCEECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTT
T ss_pred ccCCCCcCCChhhC---cceeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHH
Confidence 44678999999886 4568999999999999999976 66899999998765
No 29
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.08 E-value=1.1e-10 Score=90.67 Aligned_cols=51 Identities=25% Similarity=0.636 Sum_probs=43.3
Q ss_pred cCCCcccccCCccccCCCeEEccccCccchhhHHHHHhc------CCCCCccCccCCCCC
Q 017269 183 AKESHCAVCKEPFQLNSEAREMPCKHIYHGECILPWLSM------RNSCPLCRRELPNEA 236 (374)
Q Consensus 183 ~~~~~C~ICle~f~~~~~~~~lpC~H~FH~~CI~~WL~~------~~sCPvCR~~l~~~~ 236 (374)
..+..|+||++.|. ..+.++|+|.||..||..|++. ...||+||..+...+
T Consensus 17 ~~~~~C~IC~~~~~---~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~ 73 (85)
T 2ecv_A 17 KEEVTCPICLELLT---QPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPEN 73 (85)
T ss_dssp CCCCCCTTTCSCCS---SCBCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSSS
T ss_pred cCCCCCCCCCcccC---CceeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHHh
Confidence 34578999999886 4567899999999999999976 779999999987653
No 30
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.08 E-value=1.4e-11 Score=100.45 Aligned_cols=49 Identities=31% Similarity=0.699 Sum_probs=42.6
Q ss_pred CCCcccccCCccccCCCeEE-ccccCccchhhHHHHHhcC-CCCCccCccCCCC
Q 017269 184 KESHCAVCKEPFQLNSEARE-MPCKHIYHGECILPWLSMR-NSCPLCRRELPNE 235 (374)
Q Consensus 184 ~~~~C~ICle~f~~~~~~~~-lpC~H~FH~~CI~~WL~~~-~sCPvCR~~l~~~ 235 (374)
.+..|+||++.|. ..+. ++|+|.||..||..|++.+ .+||+||..+...
T Consensus 21 ~~~~C~IC~~~~~---~p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 71 (100)
T 3lrq_A 21 EVFRCFICMEKLR---DARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQLR 71 (100)
T ss_dssp HHTBCTTTCSBCS---SEEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCCGG
T ss_pred CCCCCccCCcccc---CccccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCCHH
Confidence 4578999999986 4666 8999999999999999877 6999999998654
No 31
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.06 E-value=4.1e-11 Score=92.49 Aligned_cols=51 Identities=29% Similarity=0.593 Sum_probs=43.0
Q ss_pred ccCCCcccccCCccccCCCeEEccccCccchhhHHHHHhc-------CCCCCccCccCCCC
Q 017269 182 VAKESHCAVCKEPFQLNSEAREMPCKHIYHGECILPWLSM-------RNSCPLCRRELPNE 235 (374)
Q Consensus 182 ~~~~~~C~ICle~f~~~~~~~~lpC~H~FH~~CI~~WL~~-------~~sCPvCR~~l~~~ 235 (374)
+..+..|+||++.|. +.+.++|+|.||..||..|++. ...||+||..+...
T Consensus 9 ~~~~~~C~IC~~~~~---~p~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~ 66 (79)
T 2egp_A 9 VQEEVTCPICLELLT---EPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFE 66 (79)
T ss_dssp CCCCCEETTTTEECS---SCCCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSS
T ss_pred cccCCCCcCCCcccC---CeeECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHh
Confidence 344688999999886 4566899999999999999976 56899999998764
No 32
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.05 E-value=7.3e-11 Score=97.08 Aligned_cols=52 Identities=23% Similarity=0.662 Sum_probs=44.3
Q ss_pred cccCCCcccccCCccccCCCeEEc-cccCccchhhHHHHHhcCCCCCccCccCCCC
Q 017269 181 HVAKESHCAVCKEPFQLNSEAREM-PCKHIYHGECILPWLSMRNSCPLCRRELPNE 235 (374)
Q Consensus 181 ~~~~~~~C~ICle~f~~~~~~~~l-pC~H~FH~~CI~~WL~~~~sCPvCR~~l~~~ 235 (374)
.+..+..|+||++.|. +.+.+ +|+|.||..||..|++.+.+||+||..+...
T Consensus 11 ~~~~~~~C~IC~~~~~---~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 63 (108)
T 2ckl_A 11 ELNPHLMCVLCGGYFI---DATTIIECLHSFCKTCIVRYLETSKYCPICDVQVHKT 63 (108)
T ss_dssp HHGGGTBCTTTSSBCS---SEEEETTTCCEEEHHHHHHHHTSCSBCTTTCCBSCSS
T ss_pred ccCCcCCCccCChHHh---CcCEeCCCCChhhHHHHHHHHHhCCcCcCCCcccccc
Confidence 3445688999999986 45565 9999999999999999999999999988764
No 33
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.05 E-value=1.2e-10 Score=86.43 Aligned_cols=44 Identities=27% Similarity=0.611 Sum_probs=37.5
Q ss_pred ccCCCcccccCCccccCCCeEEccccCccchhhHHHHHh---cCCCCCcc
Q 017269 182 VAKESHCAVCKEPFQLNSEAREMPCKHIYHGECILPWLS---MRNSCPLC 228 (374)
Q Consensus 182 ~~~~~~C~ICle~f~~~~~~~~lpC~H~FH~~CI~~WL~---~~~sCPvC 228 (374)
+..+..|+||++.|. +.+.++|+|.||..||..|++ ....||+|
T Consensus 17 ~~~~~~C~IC~~~~~---~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 17 LQEEVICPICLDILQ---KPVTIDCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCCBCTTTCSBCS---SCEECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred CccCCCCCcCCchhC---CeEEeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 345688999999887 567889999999999999997 45589998
No 34
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.05 E-value=7.4e-11 Score=98.86 Aligned_cols=53 Identities=21% Similarity=0.619 Sum_probs=45.8
Q ss_pred CCCcccccCCccccC----CCeEEccccCccchhhHHHHHhcCCCCCccCccCCCCC
Q 017269 184 KESHCAVCKEPFQLN----SEAREMPCKHIYHGECILPWLSMRNSCPLCRRELPNEA 236 (374)
Q Consensus 184 ~~~~C~ICle~f~~~----~~~~~lpC~H~FH~~CI~~WL~~~~sCPvCR~~l~~~~ 236 (374)
++..|+||++.|... ..++.++|+|.||..||..||+.+.+||+||..+....
T Consensus 6 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 62 (133)
T 4ap4_A 6 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKR 62 (133)
T ss_dssp CSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTCSBCTTTCCBCTTTC
T ss_pred CCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHhCCCCCCCCCcCcccc
Confidence 457899999998743 45588999999999999999999999999999987654
No 35
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.01 E-value=8e-11 Score=95.27 Aligned_cols=48 Identities=31% Similarity=0.672 Sum_probs=41.9
Q ss_pred CCcccccCCccccCCCeEEc-cccCccchhhHHHHHhcCCCCCccCccCCCC
Q 017269 185 ESHCAVCKEPFQLNSEAREM-PCKHIYHGECILPWLSMRNSCPLCRRELPNE 235 (374)
Q Consensus 185 ~~~C~ICle~f~~~~~~~~l-pC~H~FH~~CI~~WL~~~~sCPvCR~~l~~~ 235 (374)
+..|+||++.|. +.+.+ +|+|.||..||..|+..+.+||+||..+...
T Consensus 22 ~~~C~IC~~~~~---~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 70 (99)
T 2y43_A 22 LLRCGICFEYFN---IAMIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTVTEP 70 (99)
T ss_dssp HTBCTTTCSBCS---SEEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCGG
T ss_pred CCCcccCChhhC---CcCEECCCCCHhhHHHHHHHHHCCCCCCCCCCcCChh
Confidence 478999999986 45566 8999999999999999889999999988653
No 36
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.99 E-value=1.6e-10 Score=96.87 Aligned_cols=52 Identities=21% Similarity=0.655 Sum_probs=45.1
Q ss_pred CCCcccccCCcccc----CCCeEEccccCccchhhHHHHHhcCCCCCccCccCCCC
Q 017269 184 KESHCAVCKEPFQL----NSEAREMPCKHIYHGECILPWLSMRNSCPLCRRELPNE 235 (374)
Q Consensus 184 ~~~~C~ICle~f~~----~~~~~~lpC~H~FH~~CI~~WL~~~~sCPvCR~~l~~~ 235 (374)
....|+||++.|.. +...+.++|+|.||..||.+||+.+++||+||..+..+
T Consensus 71 ~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 126 (133)
T 4ap4_A 71 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHK 126 (133)
T ss_dssp SSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred CCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHcCCCCCCCCCcCChh
Confidence 45789999999874 23457889999999999999999999999999998765
No 37
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.99 E-value=1.6e-10 Score=83.89 Aligned_cols=43 Identities=30% Similarity=0.758 Sum_probs=36.0
Q ss_pred cCCCcccccCCccccCCCeEEccccCccchhhHHHHH---hcCCCCCcc
Q 017269 183 AKESHCAVCKEPFQLNSEAREMPCKHIYHGECILPWL---SMRNSCPLC 228 (374)
Q Consensus 183 ~~~~~C~ICle~f~~~~~~~~lpC~H~FH~~CI~~WL---~~~~sCPvC 228 (374)
..+..|+||++.+.. .+.++|+|.||..||..|+ +.+.+||+|
T Consensus 13 ~~~~~C~IC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 13 QVEASCSVCLEYLKE---PVIIECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CCCCBCSSSCCBCSS---CCCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred ccCCCCccCCcccCc---cEeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 345789999999863 4668999999999999995 456789998
No 38
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=98.99 E-value=2.2e-10 Score=91.21 Aligned_cols=49 Identities=31% Similarity=0.703 Sum_probs=41.6
Q ss_pred ccCCCcccccCCccccCCCeEEcc-ccCccchhhHHHHHhcC--CCCCccCccCC
Q 017269 182 VAKESHCAVCKEPFQLNSEAREMP-CKHIYHGECILPWLSMR--NSCPLCRRELP 233 (374)
Q Consensus 182 ~~~~~~C~ICle~f~~~~~~~~lp-C~H~FH~~CI~~WL~~~--~sCPvCR~~l~ 233 (374)
+..+..|+||++.|. +.+.++ |+|.||..||..|+..+ ..||+||..+.
T Consensus 10 ~~~~~~C~IC~~~~~---~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 61 (92)
T 3ztg_A 10 IPDELLCLICKDIMT---DAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDV 61 (92)
T ss_dssp CCTTTEETTTTEECS---SCEECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSC
T ss_pred CCcCCCCCCCChhhc---CceECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCC
Confidence 345688999999886 567899 99999999999999644 58999999874
No 39
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=98.98 E-value=3.9e-10 Score=94.95 Aligned_cols=48 Identities=25% Similarity=0.553 Sum_probs=41.9
Q ss_pred CCCcccccCCccccCCCeEEccccCccchhhHHHHHhcCC-CCCccCccCCC
Q 017269 184 KESHCAVCKEPFQLNSEAREMPCKHIYHGECILPWLSMRN-SCPLCRRELPN 234 (374)
Q Consensus 184 ~~~~C~ICle~f~~~~~~~~lpC~H~FH~~CI~~WL~~~~-sCPvCR~~l~~ 234 (374)
.+..|+||++.|. ..+.++|+|.||..||..|+..+. +||+||..+..
T Consensus 51 ~~~~C~IC~~~~~---~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 51 ETFQCICCQELVF---RPITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGR 99 (124)
T ss_dssp HHTBCTTTSSBCS---SEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred cCCCCCcCChHHc---CcEEeeCCCcccHHHHHHHHhHCcCCCCCCCccCCC
Confidence 3578999999887 677889999999999999998554 89999999866
No 40
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.96 E-value=4.2e-10 Score=84.16 Aligned_cols=51 Identities=22% Similarity=0.460 Sum_probs=40.9
Q ss_pred CCcccccCC-ccccCCC-eEEccccCccchhhHHHHHhc-CCCCCccCccCCCC
Q 017269 185 ESHCAVCKE-PFQLNSE-AREMPCKHIYHGECILPWLSM-RNSCPLCRRELPNE 235 (374)
Q Consensus 185 ~~~C~ICle-~f~~~~~-~~~lpC~H~FH~~CI~~WL~~-~~sCPvCR~~l~~~ 235 (374)
+..|+||++ .|..... ...++|+|.||..||..|+.. ...||+||..+...
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 56 (65)
T 1g25_A 3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKS 56 (65)
T ss_dssp TTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSSC
T ss_pred CCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCccccc
Confidence 568999999 6664432 356899999999999999764 46899999998665
No 41
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=98.95 E-value=2.2e-10 Score=101.03 Aligned_cols=49 Identities=27% Similarity=0.733 Sum_probs=41.2
Q ss_pred CCCcccccCCccccCCCeEEc-cccCccchhhHHHHHhc-CCCCCccCccCCCC
Q 017269 184 KESHCAVCKEPFQLNSEAREM-PCKHIYHGECILPWLSM-RNSCPLCRRELPNE 235 (374)
Q Consensus 184 ~~~~C~ICle~f~~~~~~~~l-pC~H~FH~~CI~~WL~~-~~sCPvCR~~l~~~ 235 (374)
.+..|+||++.|. ..+.+ +|+|.||..||..|++. +..||+||..+...
T Consensus 53 ~~~~C~IC~~~~~---~p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 103 (165)
T 2ckl_B 53 SELMCPICLDMLK---NTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVSK 103 (165)
T ss_dssp HHHBCTTTSSBCS---SEEEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCCSG
T ss_pred CCCCCcccChHhh---CcCEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCCCc
Confidence 4578999999987 34555 99999999999999986 77899999998643
No 42
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=98.94 E-value=1.7e-10 Score=101.05 Aligned_cols=49 Identities=24% Similarity=0.573 Sum_probs=42.7
Q ss_pred CCCcccccCCccccCCCeEEccccCccchhhHHHHHhcCC-CCCccCccCCCC
Q 017269 184 KESHCAVCKEPFQLNSEAREMPCKHIYHGECILPWLSMRN-SCPLCRRELPNE 235 (374)
Q Consensus 184 ~~~~C~ICle~f~~~~~~~~lpC~H~FH~~CI~~WL~~~~-sCPvCR~~l~~~ 235 (374)
.+..|+||++.|. ..++++|+|.||..||..|+.... .||+||..+...
T Consensus 77 ~~~~C~IC~~~~~---~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 126 (150)
T 1z6u_A 77 QSFMCVCCQELVY---QPVTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQN 126 (150)
T ss_dssp HHTBCTTTSSBCS---SEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTT
T ss_pred cCCEeecCChhhc---CCEEcCCCCchhHHHHHHHHHhCCCcCCCCCccCCCC
Confidence 3578999999886 567899999999999999998665 899999998766
No 43
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.92 E-value=5.6e-10 Score=91.61 Aligned_cols=49 Identities=29% Similarity=0.783 Sum_probs=41.3
Q ss_pred CCcccccCCccccCCCeEEccccCccchhhHHHHHhcCC---CCCccCccCCCCC
Q 017269 185 ESHCAVCKEPFQLNSEAREMPCKHIYHGECILPWLSMRN---SCPLCRRELPNEA 236 (374)
Q Consensus 185 ~~~C~ICle~f~~~~~~~~lpC~H~FH~~CI~~WL~~~~---sCPvCR~~l~~~~ 236 (374)
...|+||++.|. ..+.++|+|.||..||..|+..+. .||+||..+....
T Consensus 21 ~~~C~IC~~~~~---~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~ 72 (112)
T 1jm7_A 21 ILECPICLELIK---EPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRS 72 (112)
T ss_dssp HTSCSSSCCCCS---SCCBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTT
T ss_pred CCCCcccChhhc---CeEECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHhh
Confidence 367999999886 455689999999999999998654 8999999887653
No 44
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=98.88 E-value=6.7e-10 Score=92.88 Aligned_cols=50 Identities=24% Similarity=0.590 Sum_probs=42.8
Q ss_pred cCCCcccccCCccccCCCeEEccccCccchhhHHHHHhcCC-CCCccCccCCCC
Q 017269 183 AKESHCAVCKEPFQLNSEAREMPCKHIYHGECILPWLSMRN-SCPLCRRELPNE 235 (374)
Q Consensus 183 ~~~~~C~ICle~f~~~~~~~~lpC~H~FH~~CI~~WL~~~~-sCPvCR~~l~~~ 235 (374)
..+..|+||++.|. ..+.++|+|.||..||..|++... +||+||..+...
T Consensus 16 ~~~~~C~IC~~~~~---~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 66 (118)
T 3hct_A 16 ESKYECPICLMALR---EAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLEN 66 (118)
T ss_dssp CGGGBCTTTCSBCS---SEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred CCCCCCCcCChhhc---CeEECCcCChhhHHHHHHHHhhCCCCCCCCCCCcCHH
Confidence 34578999999886 567889999999999999998665 999999988664
No 45
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=98.86 E-value=2.7e-10 Score=94.53 Aligned_cols=47 Identities=30% Similarity=0.776 Sum_probs=41.2
Q ss_pred CCcccccCCccccCCCeEEccccCccchhhHHHHHhc-CCCCCccCccCCC
Q 017269 185 ESHCAVCKEPFQLNSEAREMPCKHIYHGECILPWLSM-RNSCPLCRRELPN 234 (374)
Q Consensus 185 ~~~C~ICle~f~~~~~~~~lpC~H~FH~~CI~~WL~~-~~sCPvCR~~l~~ 234 (374)
+..|+||++.|. +.+.++|+|.||..||..|+.. +..||+||..+..
T Consensus 15 ~~~C~iC~~~~~---~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (115)
T 3l11_A 15 ECQCGICMEILV---EPVTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVSS 62 (115)
T ss_dssp HHBCTTTCSBCS---SCEECTTSCEECHHHHCCCCCTTTSBCTTTCCBCHH
T ss_pred CCCCccCCcccC---ceeEcCCCCHHhHHHHHHHHhHCcCCCCCCCcccCc
Confidence 478999999886 5778899999999999999976 6689999999864
No 46
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.85 E-value=1.5e-09 Score=108.70 Aligned_cols=48 Identities=27% Similarity=0.765 Sum_probs=42.6
Q ss_pred CCcccccCCccccCCCeEEccccCccchhhHHHHHh-cCCCCCccCccCCCC
Q 017269 185 ESHCAVCKEPFQLNSEAREMPCKHIYHGECILPWLS-MRNSCPLCRRELPNE 235 (374)
Q Consensus 185 ~~~C~ICle~f~~~~~~~~lpC~H~FH~~CI~~WL~-~~~sCPvCR~~l~~~ 235 (374)
...|+||++.+. .++.+||+|.||..||..|+. .+.+||+||.++...
T Consensus 332 ~~~C~ICle~~~---~pv~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~~ 380 (389)
T 2y1n_A 332 FQLCKICAENDK---DVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGT 380 (389)
T ss_dssp SSBCTTTSSSBC---CEEEETTCCEECHHHHHHHHHHTCSBCTTTCCBCCEE
T ss_pred CCCCCccCcCCC---CeEEeCCCChhhHHHHHHHHhcCCCCCCCCCCccCCc
Confidence 468999999875 678899999999999999998 788999999988665
No 47
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=98.84 E-value=1.8e-09 Score=85.79 Aligned_cols=50 Identities=16% Similarity=0.216 Sum_probs=44.7
Q ss_pred cCCCcccccCCccccCCCeEEccccCccchhhHHHHHhcCCCCCccCccCCCC
Q 017269 183 AKESHCAVCKEPFQLNSEAREMPCKHIYHGECILPWLSMRNSCPLCRRELPNE 235 (374)
Q Consensus 183 ~~~~~C~ICle~f~~~~~~~~lpC~H~FH~~CI~~WL~~~~sCPvCR~~l~~~ 235 (374)
..+..|+||++.|+ +.++++|+|.|+..||..||..+.+||+|+..+...
T Consensus 12 p~~~~CpI~~~~m~---dPV~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~ 61 (85)
T 2kr4_A 12 PDEFRDPLMDTLMT---DPVRLPSGTVMDRSIILRHLLNSPTDPFNRQMLTES 61 (85)
T ss_dssp CTTTBCTTTCSBCS---SEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred chheECcccCchhc---CCeECCCCCEECHHHHHHHHhcCCCCCCCcCCCChH
Confidence 34688999999887 788999999999999999999889999999988655
No 48
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=98.82 E-value=2.1e-09 Score=89.32 Aligned_cols=49 Identities=29% Similarity=0.670 Sum_probs=42.6
Q ss_pred CCcccccCCccccCCCeEEccccCccchhhHHHHHhc-CCCCCccCccCCCCC
Q 017269 185 ESHCAVCKEPFQLNSEAREMPCKHIYHGECILPWLSM-RNSCPLCRRELPNEA 236 (374)
Q Consensus 185 ~~~C~ICle~f~~~~~~~~lpC~H~FH~~CI~~WL~~-~~sCPvCR~~l~~~~ 236 (374)
+..|+||++.|. +.+.++|+|.||..||..|++. ..+||+||..+...+
T Consensus 23 ~~~C~IC~~~~~---~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~ 72 (116)
T 1rmd_A 23 SISCQICEHILA---DPVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTD 72 (116)
T ss_dssp HTBCTTTCSBCS---SEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGG
T ss_pred CCCCCCCCcHhc---CcEEcCCCCcccHHHHHHHHhHCcCcCCCCCCCCCHhh
Confidence 478999999886 5677999999999999999986 679999999987654
No 49
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=98.82 E-value=3e-09 Score=86.91 Aligned_cols=50 Identities=14% Similarity=0.121 Sum_probs=44.7
Q ss_pred cCCCcccccCCccccCCCeEEcccc-CccchhhHHHHHhcCCCCCccCccCCCC
Q 017269 183 AKESHCAVCKEPFQLNSEAREMPCK-HIYHGECILPWLSMRNSCPLCRRELPNE 235 (374)
Q Consensus 183 ~~~~~C~ICle~f~~~~~~~~lpC~-H~FH~~CI~~WL~~~~sCPvCR~~l~~~ 235 (374)
..+..|+||++.|+ +.++++|+ |.|+..||..||..+.+||+|+.++...
T Consensus 20 p~~~~CpI~~~~m~---dPV~~~cG~htf~r~cI~~~l~~~~~cP~~~~~l~~~ 70 (98)
T 1wgm_A 20 CDEFLDPIMSTLMC---DPVVLPSSRVTVDRSTIARHLLSDQTDPFNRSPLTMD 70 (98)
T ss_dssp CTTTBCTTTCSBCS---SEEECTTTCCEEEHHHHHHHTTTSCBCTTTCSBCCTT
T ss_pred cHhcCCcCcccccc---CCeECCCCCeEECHHHHHHHHHhCCCCCCCCCCCChh
Confidence 34688999999887 78899999 9999999999999888999999998765
No 50
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=98.81 E-value=2.7e-09 Score=87.50 Aligned_cols=50 Identities=18% Similarity=0.235 Sum_probs=44.7
Q ss_pred cCCCcccccCCccccCCCeEEccccCccchhhHHHHHhcCCCCCccCccCCCC
Q 017269 183 AKESHCAVCKEPFQLNSEAREMPCKHIYHGECILPWLSMRNSCPLCRRELPNE 235 (374)
Q Consensus 183 ~~~~~C~ICle~f~~~~~~~~lpC~H~FH~~CI~~WL~~~~sCPvCR~~l~~~ 235 (374)
..+..|+||++.|+ +.++++|+|.|+..||..||..+.+||+|+.++...
T Consensus 27 p~~~~CpI~~~~m~---dPV~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~ 76 (100)
T 2kre_A 27 PDEFRDPLMDTLMT---DPVRLPSGTIMDRSIILRHLLNSPTDPFNRQTLTES 76 (100)
T ss_dssp STTTBCTTTCSBCS---SEEEETTTEEEEHHHHHHHTTSCSBCSSSCCBCCTT
T ss_pred cHhhCCcCccCccc---CCeECCCCCEEchHHHHHHHHcCCCCCCCCCCCChh
Confidence 34688999999887 788999999999999999999888999999988764
No 51
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.79 E-value=1.5e-09 Score=79.47 Aligned_cols=46 Identities=22% Similarity=0.585 Sum_probs=39.0
Q ss_pred CCCcccccCCccccCCCeEEccccCccchhhHHHHHhcCCCCCccCccCCCC
Q 017269 184 KESHCAVCKEPFQLNSEAREMPCKHIYHGECILPWLSMRNSCPLCRRELPNE 235 (374)
Q Consensus 184 ~~~~C~ICle~f~~~~~~~~lpC~H~FH~~CI~~WL~~~~sCPvCR~~l~~~ 235 (374)
.+..|+||++.|. +.+.|+|+|.||..||..| ...||+||..+...
T Consensus 5 ~~~~C~IC~~~~~---~p~~l~CgH~fC~~Ci~~~---~~~CP~Cr~~~~~~ 50 (56)
T 1bor_A 5 QFLRCQQCQAEAK---CPKLLPCLHTLCSGCLEAS---GMQCPICQAPWPLG 50 (56)
T ss_dssp CCSSCSSSCSSCB---CCSCSTTSCCSBTTTCSSS---SSSCSSCCSSSSCC
T ss_pred cCCCceEeCCccC---CeEEcCCCCcccHHHHccC---CCCCCcCCcEeecC
Confidence 4578999999987 4578999999999999884 66899999988665
No 52
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=98.78 E-value=1.1e-09 Score=95.14 Aligned_cols=51 Identities=24% Similarity=0.514 Sum_probs=42.9
Q ss_pred ccCCCcccccCCccccCCCeEEccccCccchhhHHHHHhcCC-CCCccCccCCCC
Q 017269 182 VAKESHCAVCKEPFQLNSEAREMPCKHIYHGECILPWLSMRN-SCPLCRRELPNE 235 (374)
Q Consensus 182 ~~~~~~C~ICle~f~~~~~~~~lpC~H~FH~~CI~~WL~~~~-sCPvCR~~l~~~ 235 (374)
+..+..|+||++.|. +.+.++|+|.||..||..|++... +||+||.++...
T Consensus 28 l~~~~~C~IC~~~~~---~pv~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 79 (141)
T 3knv_A 28 LEAKYLCSACRNVLR---RPFQAQCGHRYCSFCLASILSSGPQNCAACVHEGIYE 79 (141)
T ss_dssp CCGGGBCTTTCSBCS---SEEECTTSCEEEHHHHHHHGGGSCEECHHHHHTTCCC
T ss_pred CCcCcCCCCCChhhc---CcEECCCCCccCHHHHHHHHhcCCCCCCCCCCccccc
Confidence 445688999999886 557789999999999999998665 899999987544
No 53
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=98.76 E-value=4.1e-09 Score=79.35 Aligned_cols=47 Identities=17% Similarity=0.437 Sum_probs=39.7
Q ss_pred CCCcccccCCccccCCCeEEc--cccCc-cchhhHHHHHhcCCCCCccCccCC
Q 017269 184 KESHCAVCKEPFQLNSEAREM--PCKHI-YHGECILPWLSMRNSCPLCRRELP 233 (374)
Q Consensus 184 ~~~~C~ICle~f~~~~~~~~l--pC~H~-FH~~CI~~WL~~~~sCPvCR~~l~ 233 (374)
.+..|.||++.+. +...+ ||+|. |+..|+..|++.+..||+||.++.
T Consensus 7 ~~~~C~IC~~~~~---~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~ 56 (64)
T 2vje_A 7 AIEPCVICQGRPK---NGCIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPIQ 56 (64)
T ss_dssp GGSCCTTTSSSCS---CEEEEETTEEEEEECHHHHHHHHHTTCCCTTTCCCCC
T ss_pred CcCCCCcCCCCCC---CEEEECCCCCChhhHHHHHHHHHHcCCcCCCcCcchh
Confidence 3578999998765 44555 99999 899999999998899999999874
No 54
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=98.74 E-value=1.1e-08 Score=80.30 Aligned_cols=55 Identities=22% Similarity=0.573 Sum_probs=42.5
Q ss_pred ccCCCcccccCCccccCCCeEEcc--ccCccchhhHHHHHh-cCCCCCccCccCCCCCC
Q 017269 182 VAKESHCAVCKEPFQLNSEAREMP--CKHIYHGECILPWLS-MRNSCPLCRRELPNEAN 237 (374)
Q Consensus 182 ~~~~~~C~ICle~f~~~~~~~~lp--C~H~FH~~CI~~WL~-~~~sCPvCR~~l~~~~~ 237 (374)
+.++..|+||++.+...+ .+.+| |+|.||..||..|++ ....||+||..+.....
T Consensus 8 ~~~~~~CpICle~~~~~d-~~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~~~ 65 (78)
T 1e4u_A 8 KEDPVECPLCMEPLEIDD-INFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPEDPA 65 (78)
T ss_dssp CCCCCBCTTTCCBCCTTT-TTCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCSSCSS
T ss_pred cccCCcCCccCccCcccc-ccccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccCCCch
Confidence 345678999999886433 33444 999999999999985 45689999999876643
No 55
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.71 E-value=4.4e-09 Score=87.75 Aligned_cols=46 Identities=22% Similarity=0.617 Sum_probs=39.8
Q ss_pred CCcccccCCccccCCCeEEc-cccCccchhhHHHHHhcCCCCCccCccCCCC
Q 017269 185 ESHCAVCKEPFQLNSEAREM-PCKHIYHGECILPWLSMRNSCPLCRRELPNE 235 (374)
Q Consensus 185 ~~~C~ICle~f~~~~~~~~l-pC~H~FH~~CI~~WL~~~~sCPvCR~~l~~~ 235 (374)
+..|+||++.|. ..+.+ +|+|.||..||..|+. ..||+||..+...
T Consensus 22 ~~~C~IC~~~~~---~pv~~~~CgH~fC~~Ci~~~~~--~~CP~Cr~~~~~~ 68 (117)
T 1jm7_B 22 LLRCSRCTNILR---EPVCLGGCEHIFCSNCVSDCIG--TGCPVCYTPAWIQ 68 (117)
T ss_dssp TTSCSSSCSCCS---SCBCCCSSSCCBCTTTGGGGTT--TBCSSSCCBCSCS
T ss_pred CCCCCCCChHhh---CccEeCCCCCHHHHHHHHHHhc--CCCcCCCCcCccc
Confidence 578999999886 45677 8999999999999998 7899999988543
No 56
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=98.69 E-value=8.2e-09 Score=77.42 Aligned_cols=47 Identities=19% Similarity=0.504 Sum_probs=39.3
Q ss_pred CCCcccccCCccccCCCeEEc--cccCc-cchhhHHHHHhcCCCCCccCccCC
Q 017269 184 KESHCAVCKEPFQLNSEAREM--PCKHI-YHGECILPWLSMRNSCPLCRRELP 233 (374)
Q Consensus 184 ~~~~C~ICle~f~~~~~~~~l--pC~H~-FH~~CI~~WL~~~~sCPvCR~~l~ 233 (374)
.+..|.||++... +...+ ||+|. |+..|+..|.+....||+||.++.
T Consensus 6 ~~~~C~IC~~~~~---~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~ 55 (63)
T 2vje_B 6 LLKPCSLCEKRPR---DGNIIHGRTGHLVTCFHCARRLKKAGASCPICKKEIQ 55 (63)
T ss_dssp GGSBCTTTSSSBS---CEEEEETTEEEEEECHHHHHHHHHTTCBCTTTCCBCC
T ss_pred cCCCCcccCCcCC---CeEEEecCCCCHhHHHHHHHHHHHhCCcCCCcCchhh
Confidence 3578999998754 34445 99998 999999999988889999999874
No 57
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.69 E-value=1.9e-09 Score=83.25 Aligned_cols=44 Identities=23% Similarity=0.610 Sum_probs=38.1
Q ss_pred CCcccccCCccccCCCeEEccccCc-cchhhHHHHHhcCCCCCccCccCCCC
Q 017269 185 ESHCAVCKEPFQLNSEAREMPCKHI-YHGECILPWLSMRNSCPLCRRELPNE 235 (374)
Q Consensus 185 ~~~C~ICle~f~~~~~~~~lpC~H~-FH~~CI~~WL~~~~sCPvCR~~l~~~ 235 (374)
+..|+||++.+. .++.+||+|. ||..|+..| ..||+||..+...
T Consensus 24 ~~~C~iC~~~~~---~~~~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~~~ 68 (74)
T 4ic3_A 24 EKLCKICMDRNI---AIVFVPCGHLVTCKQCAEAV----DKCPMCYTVITFK 68 (74)
T ss_dssp HTBCTTTSSSBC---CEEEETTCCBCCCHHHHTTC----SBCTTTCCBCSEE
T ss_pred CCCCCCCCCCCC---CEEEcCCCChhHHHHhhhcC----ccCCCcCcCccCc
Confidence 468999998765 6788999999 999999998 8899999987543
No 58
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.60 E-value=1.9e-08 Score=94.09 Aligned_cols=50 Identities=20% Similarity=0.151 Sum_probs=42.9
Q ss_pred cCCCcccccCCccccCCCeEEccccCccchhhHHHHHhcC-CCCCccCccCCCC
Q 017269 183 AKESHCAVCKEPFQLNSEAREMPCKHIYHGECILPWLSMR-NSCPLCRRELPNE 235 (374)
Q Consensus 183 ~~~~~C~ICle~f~~~~~~~~lpC~H~FH~~CI~~WL~~~-~sCPvCR~~l~~~ 235 (374)
.....|+||++.|. +++++||+|.||..||..||..+ .+||+||.++...
T Consensus 206 ~~~~~c~i~~~~~~---dPv~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~~ 256 (281)
T 2c2l_A 206 PDYLCGKISFELMR---EPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQE 256 (281)
T ss_dssp CSTTBCTTTCSBCS---SEEECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCGG
T ss_pred CcccCCcCcCCHhc---CCeECCCCCEECHHHHHHHHHHCCCCCcCCCCCCchh
Confidence 34688999999887 78899999999999999999764 4699999998654
No 59
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.56 E-value=2.5e-08 Score=80.41 Aligned_cols=49 Identities=22% Similarity=0.575 Sum_probs=40.8
Q ss_pred CCCcccccCCccccCCCeEEcc-ccCccchhhHHHHHhcC------CCCCc--cCcc-CCCC
Q 017269 184 KESHCAVCKEPFQLNSEAREMP-CKHIYHGECILPWLSMR------NSCPL--CRRE-LPNE 235 (374)
Q Consensus 184 ~~~~C~ICle~f~~~~~~~~lp-C~H~FH~~CI~~WL~~~------~sCPv--CR~~-l~~~ 235 (374)
.+..|+||++.|+ +.++++ |+|.|+..||..||..+ .+||+ |+.. +...
T Consensus 6 ~~~~CPI~~~~~~---dPV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~~~ 64 (94)
T 2yu4_A 6 SGFTCPITKEEMK---KPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRKS 64 (94)
T ss_dssp SCCBCTTTCSBCS---SEEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBCGG
T ss_pred cEeECcCcCchhc---CCEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccCHh
Confidence 4578999999887 678886 99999999999999754 48999 9876 5544
No 60
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=98.54 E-value=2.7e-08 Score=87.87 Aligned_cols=51 Identities=24% Similarity=0.595 Sum_probs=42.9
Q ss_pred ccCCCcccccCCccccCCCeEEccccCccchhhHHHHHhcC-CCCCccCccCCCC
Q 017269 182 VAKESHCAVCKEPFQLNSEAREMPCKHIYHGECILPWLSMR-NSCPLCRRELPNE 235 (374)
Q Consensus 182 ~~~~~~C~ICle~f~~~~~~~~lpC~H~FH~~CI~~WL~~~-~sCPvCR~~l~~~ 235 (374)
+..+..|+||++.|. ..+.++|+|.||..||..|++.. .+||+||..+...
T Consensus 15 ~~~~~~C~IC~~~~~---~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 66 (170)
T 3hcs_A 15 LESKYECPICLMALR---EAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLEN 66 (170)
T ss_dssp CCGGGBCTTTCSBCS---SEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred CCCCCCCCCCChhhc---CcEECCCCCHHHHHHHHHHHHhCCCCCCCCccCcchh
Confidence 344678999999886 56778999999999999999754 4999999988664
No 61
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=98.52 E-value=5.4e-08 Score=72.72 Aligned_cols=48 Identities=23% Similarity=0.606 Sum_probs=37.4
Q ss_pred CCCcccccCCccccCCCeEEcccc--C---ccchhhHHHHHh--cCCCCCccCccCCC
Q 017269 184 KESHCAVCKEPFQLNSEAREMPCK--H---IYHGECILPWLS--MRNSCPLCRRELPN 234 (374)
Q Consensus 184 ~~~~C~ICle~f~~~~~~~~lpC~--H---~FH~~CI~~WL~--~~~sCPvCR~~l~~ 234 (374)
....|.||+++. ++.. ++||. + .||..||.+||. .+.+||+|++++..
T Consensus 5 ~~~~CrIC~~~~--~~~l-~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~~ 59 (60)
T 1vyx_A 5 DVPVCWICNEEL--GNER-FRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYNT 59 (60)
T ss_dssp SCCEETTTTEEC--SCCC-CCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCCC
T ss_pred CCCEeEEeecCC--CCce-ecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeeec
Confidence 457899999873 3333 68954 5 999999999996 36789999998753
No 62
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=98.42 E-value=4.9e-08 Score=96.13 Aligned_cols=52 Identities=23% Similarity=0.601 Sum_probs=39.8
Q ss_pred CCCcccccCCccccCCCe-----EEccccCccchhhHHHHHhcC-----------CCCCccCccCCCC
Q 017269 184 KESHCAVCKEPFQLNSEA-----REMPCKHIYHGECILPWLSMR-----------NSCPLCRRELPNE 235 (374)
Q Consensus 184 ~~~~C~ICle~f~~~~~~-----~~lpC~H~FH~~CI~~WL~~~-----------~sCPvCR~~l~~~ 235 (374)
...+|+||++.+..+..+ ...+|+|.||..||.+||+.. .+||.||++|...
T Consensus 307 ~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~s 374 (381)
T 3k1l_B 307 EELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLSTS 374 (381)
T ss_dssp SCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEGG
T ss_pred CCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCcc
Confidence 347899999998763222 123599999999999999642 4699999988754
No 63
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.41 E-value=2.1e-07 Score=70.83 Aligned_cols=45 Identities=24% Similarity=0.675 Sum_probs=37.8
Q ss_pred CCCcccccCCccccCCCeEEccccCc-cchhhHHHHHhcCCCCCccCccCCCC
Q 017269 184 KESHCAVCKEPFQLNSEAREMPCKHI-YHGECILPWLSMRNSCPLCRRELPNE 235 (374)
Q Consensus 184 ~~~~C~ICle~f~~~~~~~~lpC~H~-FH~~CI~~WL~~~~sCPvCR~~l~~~ 235 (374)
.+..|.||++... .++.+||+|. |+..|+.. ...||+||..+...
T Consensus 14 ~~~~C~IC~~~~~---~~v~~pCgH~~~C~~C~~~----~~~CP~CR~~i~~~ 59 (68)
T 2ea5_A 14 NSKDCVVCQNGTV---NWVLLPCRHTCLCDGCVKY----FQQCPMCRQFVQES 59 (68)
T ss_dssp CSSCCSSSSSSCC---CCEETTTTBCCSCTTHHHH----CSSCTTTCCCCCCE
T ss_pred CCCCCCCcCcCCC---CEEEECCCChhhhHHHHhc----CCCCCCCCcchhce
Confidence 3578999988754 6889999999 99999984 57999999988654
No 64
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.39 E-value=1.1e-07 Score=73.26 Aligned_cols=44 Identities=23% Similarity=0.614 Sum_probs=36.3
Q ss_pred CCcccccCCccccCCCeEEccccCc-cchhhHHHHHhcCCCCCccCccCCCC
Q 017269 185 ESHCAVCKEPFQLNSEAREMPCKHI-YHGECILPWLSMRNSCPLCRRELPNE 235 (374)
Q Consensus 185 ~~~C~ICle~f~~~~~~~~lpC~H~-FH~~CI~~WL~~~~sCPvCR~~l~~~ 235 (374)
+..|+||++.+. .++.+||+|. ||..|+.. ...||+||.++...
T Consensus 25 ~~~C~IC~~~~~---~~~~~pCgH~~~C~~C~~~----~~~CP~Cr~~i~~~ 69 (75)
T 2ecg_A 25 EKLCKICMDRNI---AIVFVPCGHLVTCKQCAEA----VDKCPMCYTVITFK 69 (75)
T ss_dssp HHSCSSSCSSCC---CBCCSSSCCCCBCHHHHHH----CSBCTTTCCBCCCC
T ss_pred CCCCCcCCCCCC---CEEEecCCCHHHHHHHhhC----CCCCccCCceecCc
Confidence 357999998865 5678999999 99999964 47899999988653
No 65
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=98.39 E-value=1.5e-07 Score=85.08 Aligned_cols=51 Identities=18% Similarity=0.132 Sum_probs=43.3
Q ss_pred cCCCcccccCCccccCCCeEEccccCccchhhHHHHHhcC-CCCCccCccCCCCC
Q 017269 183 AKESHCAVCKEPFQLNSEAREMPCKHIYHGECILPWLSMR-NSCPLCRRELPNEA 236 (374)
Q Consensus 183 ~~~~~C~ICle~f~~~~~~~~lpC~H~FH~~CI~~WL~~~-~sCPvCR~~l~~~~ 236 (374)
.....|+||++.|. +++++||+|.|+..||..||..+ .+||+|+.++....
T Consensus 104 p~~f~CPI~~elm~---DPV~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~~~ 155 (179)
T 2f42_A 104 PDYLCGKISFELMR---EPCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQDQ 155 (179)
T ss_dssp CGGGBCTTTCSBCS---SEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGG
T ss_pred cHhhcccCccccCC---CCeECCCCCEECHHHHHHHHHhCCCCCCCCcCCCChhh
Confidence 34588999999887 68899999999999999999764 47999999886653
No 66
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.25 E-value=2.5e-07 Score=72.44 Aligned_cols=44 Identities=30% Similarity=0.639 Sum_probs=37.3
Q ss_pred CCcccccCCccccCCCeEEccccCc-cchhhHHHHHhcCCCCCccCccCCCC
Q 017269 185 ESHCAVCKEPFQLNSEAREMPCKHI-YHGECILPWLSMRNSCPLCRRELPNE 235 (374)
Q Consensus 185 ~~~C~ICle~f~~~~~~~~lpC~H~-FH~~CI~~WL~~~~sCPvCR~~l~~~ 235 (374)
+..|.||++.+. .++.+||+|. |+..|+..| ..||+||..+...
T Consensus 18 ~~~C~IC~~~~~---~~v~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~~~ 62 (79)
T 2yho_A 18 AMLCMVCCEEEI---NSTFCPCGHTVCCESCAAQL----QSCPVCRSRVEHV 62 (79)
T ss_dssp HTBCTTTSSSBC---CEEEETTCBCCBCHHHHTTC----SBCTTTCCBCCEE
T ss_pred CCEeEEeCcccC---cEEEECCCCHHHHHHHHHhc----CcCCCCCchhhCe
Confidence 367999988765 6788999999 999999887 4999999988654
No 67
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.23 E-value=3.9e-07 Score=72.94 Aligned_cols=47 Identities=21% Similarity=0.639 Sum_probs=37.3
Q ss_pred CCcccccCCccccCCCeEEccccCccchhhHHHHHhc--------CCCCCc--cCcc
Q 017269 185 ESHCAVCKEPFQLNSEAREMPCKHIYHGECILPWLSM--------RNSCPL--CRRE 231 (374)
Q Consensus 185 ~~~C~ICle~f~~~~~~~~lpC~H~FH~~CI~~WL~~--------~~sCPv--CR~~ 231 (374)
...|+||++++...+.....+|+|.||..||..+++. .-.||. |+..
T Consensus 5 ~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 5 SSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp BCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred CcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 4679999999875444444579999999999999953 137999 9987
No 68
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=98.23 E-value=4.4e-07 Score=67.82 Aligned_cols=49 Identities=12% Similarity=0.182 Sum_probs=43.0
Q ss_pred CcccccCCccccCCCeEEc-cccCccchhhHHHHHhcCCCCCccCccCCCCCC
Q 017269 186 SHCAVCKEPFQLNSEAREM-PCKHIYHGECILPWLSMRNSCPLCRRELPNEAN 237 (374)
Q Consensus 186 ~~C~ICle~f~~~~~~~~l-pC~H~FH~~CI~~WL~~~~sCPvCR~~l~~~~~ 237 (374)
..|+||++.|+ +.+.+ +|+|.|...||.+||+.+.+||+++.+|..++.
T Consensus 4 ~~CpIs~~~m~---dPV~~~~sG~~yer~~I~~~l~~~~~cP~t~~~L~~~~L 53 (61)
T 2bay_A 4 MLCAISGKVPR---RPVLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSIEEI 53 (61)
T ss_dssp CCCTTTCSCCS---SEEEETTTTEEEEHHHHHHHHHHHSBCTTTCCBCCGGGC
T ss_pred EEecCCCCCCC---CCEEeCCCCcEEcHHHHHHHHHhCCCCcCCcCCCChhhc
Confidence 57999999887 56777 899999999999999988899999999877644
No 69
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.13 E-value=5.9e-07 Score=88.74 Aligned_cols=44 Identities=30% Similarity=0.720 Sum_probs=38.5
Q ss_pred CCCcccccCCccccCCCeEEccccCc-cchhhHHHHHhcCCCCCccCccCCC
Q 017269 184 KESHCAVCKEPFQLNSEAREMPCKHI-YHGECILPWLSMRNSCPLCRRELPN 234 (374)
Q Consensus 184 ~~~~C~ICle~f~~~~~~~~lpC~H~-FH~~CI~~WL~~~~sCPvCR~~l~~ 234 (374)
.+..|+||++.+. .++.+||+|. ||..||..| ..||+||..+..
T Consensus 294 ~~~~C~IC~~~~~---~~v~lpCgH~~fC~~C~~~~----~~CP~CR~~i~~ 338 (345)
T 3t6p_A 294 EERTCKVCMDKEV---SVVFIPCGHLVVCQECAPSL----RKCPICRGIIKG 338 (345)
T ss_dssp TTCBCTTTSSSBC---CEEEETTCCEEECTTTGGGC----SBCTTTCCBCCE
T ss_pred CCCCCCccCCcCC---ceEEcCCCChhHhHHHHhcC----CcCCCCCCCccC
Confidence 4678999999875 6788999999 999999988 789999998754
No 70
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=98.01 E-value=2.1e-06 Score=81.69 Aligned_cols=50 Identities=20% Similarity=0.533 Sum_probs=40.9
Q ss_pred CCCcccccCCccccCCCeEE-ccccCccchhhHHHHHhcC--CCCCc--cCccCCCCC
Q 017269 184 KESHCAVCKEPFQLNSEARE-MPCKHIYHGECILPWLSMR--NSCPL--CRRELPNEA 236 (374)
Q Consensus 184 ~~~~C~ICle~f~~~~~~~~-lpC~H~FH~~CI~~WL~~~--~sCPv--CR~~l~~~~ 236 (374)
.+..|+||++.|. ++++ +.|+|.|+..||..|++.+ .+||+ |+..+...+
T Consensus 180 ~el~CPIcl~~f~---DPVts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~~d 234 (267)
T 3htk_C 180 IELTCPITCKPYE---APLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSMRD 234 (267)
T ss_dssp CCSBCTTTSSBCS---SEEEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEECGGG
T ss_pred eeeECcCccCccc---CCeeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCchhh
Confidence 4578999999986 4555 5899999999999999764 47999 999876553
No 71
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=97.81 E-value=8.5e-06 Score=76.50 Aligned_cols=51 Identities=20% Similarity=0.525 Sum_probs=41.5
Q ss_pred CCcccccCCccccCCCeEEcc-ccCccchhhHHHHHhcCC--CCCccCccCCCCCCC
Q 017269 185 ESHCAVCKEPFQLNSEAREMP-CKHIYHGECILPWLSMRN--SCPLCRRELPNEAND 238 (374)
Q Consensus 185 ~~~C~ICle~f~~~~~~~~lp-C~H~FH~~CI~~WL~~~~--sCPvCR~~l~~~~~~ 238 (374)
-..|.||.+....+ ...+ |+|.||..|+..|++.+. .||.|+..|+...+.
T Consensus 180 i~~C~iC~~iv~~g---~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~~~~~ 233 (238)
T 3nw0_A 180 VKICNICHSLLIQG---QSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHEIPK 233 (238)
T ss_dssp CCBCTTTCSBCSSC---EECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCCSCCCC
T ss_pred CCcCcchhhHHhCC---cccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCC
Confidence 47899999987754 3343 999999999999997654 899999999887543
No 72
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=97.71 E-value=1.8e-05 Score=64.79 Aligned_cols=47 Identities=26% Similarity=0.644 Sum_probs=38.5
Q ss_pred cccccCCccccCCCeEEccccCccchhhHHHHHh-cCCCCCccCccCCCC
Q 017269 187 HCAVCKEPFQLNSEAREMPCKHIYHGECILPWLS-MRNSCPLCRRELPNE 235 (374)
Q Consensus 187 ~C~ICle~f~~~~~~~~lpC~H~FH~~CI~~WL~-~~~sCPvCR~~l~~~ 235 (374)
.|.+|--.+. ...+.+||+|.||.+|+..|.+ ..++||.|+.++...
T Consensus 3 fC~~C~~Pi~--iygRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~rV 50 (101)
T 3vk6_A 3 FCDKCGLPIK--VYGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQRI 50 (101)
T ss_dssp BCTTTCSBCS--EEEEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCSEE
T ss_pred ecCccCCCeE--EEeeeccccccHHHHHHHHHHhccCCCCcCcCCeeeee
Confidence 4788865554 4778999999999999999985 567999999988654
No 73
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=94.97 E-value=0.028 Score=45.40 Aligned_cols=50 Identities=26% Similarity=0.495 Sum_probs=39.7
Q ss_pred CCCcccccCCccccCCCeEEccccCccchhhHHHHHhcCCCCCccCccCCCCCC
Q 017269 184 KESHCAVCKEPFQLNSEAREMPCKHIYHGECILPWLSMRNSCPLCRRELPNEAN 237 (374)
Q Consensus 184 ~~~~C~ICle~f~~~~~~~~lpC~H~FH~~CI~~WL~~~~sCPvCR~~l~~~~~ 237 (374)
.-..|..|+-+.+ ..+. -..|.+|..|+...|...+.||+|+++||..-.
T Consensus 27 G~~nCKsCWf~~k---~LV~-C~dHYLCl~CLtlmL~~SdrCpIC~~pLPtkl~ 76 (99)
T 2ko5_A 27 GPQFCKSCWFENK---GLVE-CNNHYLCLNCLTLLLSVSNRCPICKMPLPTKLR 76 (99)
T ss_dssp CCCCCCSSCSCCS---SEEE-CSSCEEEHHHHHHTCSSSSEETTTTEECCCCSC
T ss_pred CcccChhhccccC---Ceee-ecchhhHHHHHHHHHhhccCCcccCCcCCccee
Confidence 3477999987654 2222 246999999999999999999999999998743
No 74
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=93.43 E-value=0.068 Score=40.25 Aligned_cols=44 Identities=23% Similarity=0.598 Sum_probs=32.0
Q ss_pred CCCcccccCCccccCCCeEEcc-ccCccchhhHHHHHhcC----CCCCccCcc
Q 017269 184 KESHCAVCKEPFQLNSEAREMP-CKHIYHGECILPWLSMR----NSCPLCRRE 231 (374)
Q Consensus 184 ~~~~C~ICle~f~~~~~~~~lp-C~H~FH~~CI~~WL~~~----~sCPvCR~~ 231 (374)
.+..|.||.+. + ++..-. |...||..|+.+.|... -.||.|...
T Consensus 11 ~~~~C~vC~~~---~-~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~ 59 (66)
T 2lri_C 11 PGARCGVCGDG---T-DVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGD 59 (66)
T ss_dssp TTCCCTTTSCC---T-TCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTC
T ss_pred CCCCcCCCCCC---C-eEEECCCCCCceecccCCCccCcCCCCCEECccccCC
Confidence 34679999753 3 333333 99999999999988543 379999764
No 75
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=91.43 E-value=0.1 Score=41.41 Aligned_cols=33 Identities=18% Similarity=0.488 Sum_probs=24.9
Q ss_pred CCcccccCCccccCCCeEEccccCccchhhHHH
Q 017269 185 ESHCAVCKEPFQLNSEAREMPCKHIYHGECILP 217 (374)
Q Consensus 185 ~~~C~ICle~f~~~~~~~~lpC~H~FH~~CI~~ 217 (374)
+..|.||++.+.......-+.|+|.|+..||..
T Consensus 3 e~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~ 35 (101)
T 2jun_A 3 KVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKA 35 (101)
T ss_dssp CCBCTTCCSSSCCBCCEEETTTTEEECHHHHHH
T ss_pred CCCCcCCCCCCCCCceEECCcCChHHhHHHCHH
Confidence 467999998653322233388999999999998
No 76
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=90.33 E-value=0.19 Score=39.83 Aligned_cols=32 Identities=22% Similarity=0.763 Sum_probs=23.5
Q ss_pred cCCCcccccCCccccCCCeEEcc---ccCccchhhHHHH
Q 017269 183 AKESHCAVCKEPFQLNSEAREMP---CKHIYHGECILPW 218 (374)
Q Consensus 183 ~~~~~C~ICle~f~~~~~~~~lp---C~H~FH~~CI~~W 218 (374)
..|..|.||.- |..+ ..+| |+-.||..|+.+-
T Consensus 13 ~~D~~C~VC~~-~t~~---~l~pCRvC~RvfH~~CL~r~ 47 (89)
T 1wil_A 13 VNDEMCDVCEV-WTAE---SLFPCRVCTRVFHDGCLRRM 47 (89)
T ss_dssp CCSCCCTTTCC-CCSS---CCSSCSSSSSCCCHHHHHHH
T ss_pred CCCcccCcccc-cccc---ceeccccccccccHhhcccc
Confidence 35788999943 4432 2455 8999999999996
No 77
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=88.43 E-value=0.31 Score=40.35 Aligned_cols=34 Identities=18% Similarity=0.471 Sum_probs=26.7
Q ss_pred CCceeecccCcceeeccCCCCCc-cCCCCCCCceEEec
Q 017269 5 GLSYWCYRCNRIIRIQSRTEDAI-VCPDCHTGFIEQIE 41 (374)
Q Consensus 5 ~~~YWCh~C~r~V~~~~~~~~~~-~CP~C~~gFvEEi~ 41 (374)
...|||..|...+... .... .||.|++..++-+.
T Consensus 71 p~~~~C~~CG~~~e~~---~~~~~~CP~Cgs~~~~i~~ 105 (119)
T 2kdx_A 71 KVELECKDCSHVFKPN---ALDYGVCEKCHSKNVIITQ 105 (119)
T ss_dssp CCEEECSSSSCEECSC---CSTTCCCSSSSSCCCEEEE
T ss_pred cceEEcCCCCCEEeCC---CCCCCcCccccCCCcEEec
Confidence 4589999999988763 3346 89999999877554
No 78
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=88.18 E-value=0.27 Score=36.10 Aligned_cols=44 Identities=30% Similarity=0.675 Sum_probs=31.2
Q ss_pred cCCCcccccCCccccCCCeEEcc-ccCccchhhHHHHHh----cCCCCCccCc
Q 017269 183 AKESHCAVCKEPFQLNSEAREMP-CKHIYHGECILPWLS----MRNSCPLCRR 230 (374)
Q Consensus 183 ~~~~~C~ICle~f~~~~~~~~lp-C~H~FH~~CI~~WL~----~~~sCPvCR~ 230 (374)
..+..|.||.+. .++.... |...||..|+.+-|. ..-.||.|..
T Consensus 9 ~~~~~C~vC~~~----g~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~ 57 (61)
T 2l5u_A 9 DHQDYCEVCQQG----GEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEK 57 (61)
T ss_dssp CCCSSCTTTSCC----SSEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGG
T ss_pred CCCCCCccCCCC----CcEEECCCCChhhhhhccCCCCCCCCCCceECccccc
Confidence 346789999763 2343333 899999999998663 2337999965
No 79
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=87.03 E-value=0.17 Score=37.21 Aligned_cols=48 Identities=21% Similarity=0.572 Sum_probs=33.4
Q ss_pred CCCcccccCCccccCCCeEEcc-ccCccchhhHHHHHh-----cCCCCCccCcc
Q 017269 184 KESHCAVCKEPFQLNSEAREMP-CKHIYHGECILPWLS-----MRNSCPLCRRE 231 (374)
Q Consensus 184 ~~~~C~ICle~f~~~~~~~~lp-C~H~FH~~CI~~WL~-----~~~sCPvCR~~ 231 (374)
++..|+||...+..+...+..- |...||..|+.--.. ..-.||.|+.+
T Consensus 5 e~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~k 58 (64)
T 1we9_A 5 SSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNK 58 (64)
T ss_dssp SCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHTT
T ss_pred CCCCCCCCCCccCCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcCc
Confidence 3567999998875444444444 999999999865432 23479999653
No 80
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=84.09 E-value=0.37 Score=35.38 Aligned_cols=45 Identities=31% Similarity=0.589 Sum_probs=30.8
Q ss_pred CCCcccccCCccccCCCeEEc-cccCccchhhHHHHHhc----CCCCCccCccC
Q 017269 184 KESHCAVCKEPFQLNSEAREM-PCKHIYHGECILPWLSM----RNSCPLCRREL 232 (374)
Q Consensus 184 ~~~~C~ICle~f~~~~~~~~l-pC~H~FH~~CI~~WL~~----~~sCPvCR~~l 232 (374)
.+..|.||.+. + .+... .|...||..|+.+-|.. .-.||.|....
T Consensus 8 ~~~~C~vC~~~---g-~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~ 57 (61)
T 1mm2_A 8 HMEFCRVCKDG---G-ELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCPA 57 (61)
T ss_dssp SCSSCTTTCCC---S-SCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTTC
T ss_pred CCCcCCCCCCC---C-CEEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCch
Confidence 45789999753 2 22222 28999999999976643 23699997653
No 81
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=84.07 E-value=0.59 Score=41.92 Aligned_cols=47 Identities=19% Similarity=0.462 Sum_probs=34.0
Q ss_pred CcccccCCccccCCC---eEEcc-ccCccchhhHHHH------Hh-----cCCCCCccCccC
Q 017269 186 SHCAVCKEPFQLNSE---AREMP-CKHIYHGECILPW------LS-----MRNSCPLCRREL 232 (374)
Q Consensus 186 ~~C~ICle~f~~~~~---~~~lp-C~H~FH~~CI~~W------L~-----~~~sCPvCR~~l 232 (374)
..|+||...|..++. .+... |...||..|+.-- +. ..-.||.|+..-
T Consensus 3 ~~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~~ 64 (183)
T 3lqh_A 3 NFCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERH 64 (183)
T ss_dssp CBCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCSS
T ss_pred CcCCCCcCccCCcccCCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCCC
Confidence 569999999887653 44544 9999999998531 11 156899998753
No 82
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=84.00 E-value=0.4 Score=36.30 Aligned_cols=49 Identities=24% Similarity=0.495 Sum_probs=33.7
Q ss_pred CCcccccCCccccCCCeEEcc-ccCccchhhHHHHHh----cCCCCCccCccCCC
Q 017269 185 ESHCAVCKEPFQLNSEAREMP-CKHIYHGECILPWLS----MRNSCPLCRRELPN 234 (374)
Q Consensus 185 ~~~C~ICle~f~~~~~~~~lp-C~H~FH~~CI~~WL~----~~~sCPvCR~~l~~ 234 (374)
...|.||..... ++..+..- |...||..|+..-+. ..-.||.|+..+..
T Consensus 18 ~~~C~~C~~~~~-~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~~k 71 (75)
T 2k16_A 18 IWICPGCNKPDD-GSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKIKK 71 (75)
T ss_dssp EECBTTTTBCCS-SCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHHCS
T ss_pred CcCCCCCCCCCC-CCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCchhh
Confidence 466999977642 33343433 999999999986653 23479999876644
No 83
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=80.81 E-value=1 Score=49.81 Aligned_cols=50 Identities=16% Similarity=0.096 Sum_probs=43.4
Q ss_pred CCCcccccCCccccCCCeEEcccc-CccchhhHHHHHhcCCCCCccCccCCCCC
Q 017269 184 KESHCAVCKEPFQLNSEAREMPCK-HIYHGECILPWLSMRNSCPLCRRELPNEA 236 (374)
Q Consensus 184 ~~~~C~ICle~f~~~~~~~~lpC~-H~FH~~CI~~WL~~~~sCPvCR~~l~~~~ 236 (374)
++..|+|-++.|. +++++|.+ +.|-..+|..||..+.+||+=|.+|...+
T Consensus 890 ~~F~cPIs~~lM~---DPVilpsG~~TydR~~I~~wl~~~~tdP~Tr~~L~~~~ 940 (968)
T 3m62_A 890 DEFLDPLMYTIMK---DPVILPASKMNIDRSTIKAHLLSDSTDPFNRMPLKLED 940 (968)
T ss_dssp GGGBCTTTCSBCS---SEEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCGGG
T ss_pred HHhCCcchhhHHh---CCeEcCCCCEEECHHHHHHHHhcCCCCCCCCCCCCccc
Confidence 4578999988776 88899987 68999999999998999999999987653
No 84
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=80.50 E-value=0.67 Score=40.94 Aligned_cols=45 Identities=29% Similarity=0.638 Sum_probs=32.2
Q ss_pred CCCcccccCCccccCCCeEEcc-ccCccchhhHHHHHhc----CCCCCccCccC
Q 017269 184 KESHCAVCKEPFQLNSEAREMP-CKHIYHGECILPWLSM----RNSCPLCRREL 232 (374)
Q Consensus 184 ~~~~C~ICle~f~~~~~~~~lp-C~H~FH~~CI~~WL~~----~~sCPvCR~~l 232 (374)
.+..|.||.+. |+ +.... |...||..|+.+-|.. .-.||.|+...
T Consensus 3 ~~~~C~~C~~~---g~-ll~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~~ 52 (184)
T 3o36_A 3 NEDWCAVCQNG---GE-LLCCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDLS 52 (184)
T ss_dssp SCSSCTTTCCC---SS-CEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCCccccCCCC---Ce-eeecCCCCcccCccccCCCCCCCCCCCEECccccCcc
Confidence 35779999753 33 33333 9999999999887753 34799998754
No 85
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=80.19 E-value=1.2 Score=35.30 Aligned_cols=46 Identities=30% Similarity=0.657 Sum_probs=32.5
Q ss_pred cCCCcccccCCccccCCCeEEcc-ccCccchhhHHHHHhc----CCCCCccCccC
Q 017269 183 AKESHCAVCKEPFQLNSEAREMP-CKHIYHGECILPWLSM----RNSCPLCRREL 232 (374)
Q Consensus 183 ~~~~~C~ICle~f~~~~~~~~lp-C~H~FH~~CI~~WL~~----~~sCPvCR~~l 232 (374)
..+..|.||.+. + ++.... |.-.||..|+.+=|.. .-.||.|...-
T Consensus 23 ~n~~~C~vC~~~---g-~LL~CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~~~ 73 (88)
T 1fp0_A 23 DSATICRVCQKP---G-DLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVLP 73 (88)
T ss_dssp SSSSCCSSSCSS---S-CCEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCCCC
T ss_pred CCCCcCcCcCCC---C-CEEECCCCCCceecccCCCCCCCCcCCCcCCccccCCC
Confidence 346789999764 3 333333 8899999999887743 33799997653
No 86
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=80.16 E-value=0.88 Score=31.75 Aligned_cols=43 Identities=26% Similarity=0.576 Sum_probs=28.4
Q ss_pred cccccCCccccCCCeEEcc-ccCccchhhHHHHHhc----CCCCCccCc
Q 017269 187 HCAVCKEPFQLNSEAREMP-CKHIYHGECILPWLSM----RNSCPLCRR 230 (374)
Q Consensus 187 ~C~ICle~f~~~~~~~~lp-C~H~FH~~CI~~WL~~----~~sCPvCR~ 230 (374)
.|.||.+.-.. +.+..-. |...||..|+.+=|.. .-.||.|+.
T Consensus 2 ~C~vC~~~~~~-~~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKKGED-DKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSSCC-SCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCCCCCCCCCC-CCEEECCCCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence 58899765322 2333333 9999999999765532 236999964
No 87
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=79.90 E-value=0.33 Score=34.90 Aligned_cols=44 Identities=30% Similarity=0.745 Sum_probs=30.0
Q ss_pred cCCCcccccCCccccCCCeEEcc-ccCccchhhHHHHHhc----CCCCCccCc
Q 017269 183 AKESHCAVCKEPFQLNSEAREMP-CKHIYHGECILPWLSM----RNSCPLCRR 230 (374)
Q Consensus 183 ~~~~~C~ICle~f~~~~~~~~lp-C~H~FH~~CI~~WL~~----~~sCPvCR~ 230 (374)
..+..|.||.+. + .+.... |...||..|+.+-|.. .-.||.|..
T Consensus 7 ~~~~~C~vC~~~---g-~ll~Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~~ 55 (56)
T 2yql_A 7 GHEDFCSVCRKS---G-QLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQD 55 (56)
T ss_dssp SSCCSCSSSCCS---S-CCEECSSSSCEECSSSSSSCCCSCCCSSCCCHHHHC
T ss_pred CCCCCCccCCCC---C-eEEEcCCCCcceECccCCCCcCCCCCCceEChhhhC
Confidence 345789999764 3 333333 9999999999876643 226888853
No 88
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=79.13 E-value=0.49 Score=34.86 Aligned_cols=49 Identities=22% Similarity=0.499 Sum_probs=33.3
Q ss_pred CCCcccccCCcccc-CCCeEEcc-ccCccchhhHHHHHh-------cCCCCCccCccC
Q 017269 184 KESHCAVCKEPFQL-NSEAREMP-CKHIYHGECILPWLS-------MRNSCPLCRREL 232 (374)
Q Consensus 184 ~~~~C~ICle~f~~-~~~~~~lp-C~H~FH~~CI~~WL~-------~~~sCPvCR~~l 232 (374)
.+..|.||...... ...+.... |...||..|+.+-|. ..-.||.|....
T Consensus 5 ~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~~ 62 (66)
T 2yt5_A 5 SSGVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFAT 62 (66)
T ss_dssp CCCCBSSSCCCCCBTTBCEEECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHTT
T ss_pred CCCCCCCCCCCCCCCCCCEEECCCCChHHHhhhCCCcccccccCCCCCEECCCCcCcc
Confidence 45789999876432 23343434 999999999987542 233799996644
No 89
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=78.59 E-value=0.79 Score=41.33 Aligned_cols=45 Identities=29% Similarity=0.612 Sum_probs=32.0
Q ss_pred CCCcccccCCccccCCCeEEcc-ccCccchhhHHHHHhc----CCCCCccCccC
Q 017269 184 KESHCAVCKEPFQLNSEAREMP-CKHIYHGECILPWLSM----RNSCPLCRREL 232 (374)
Q Consensus 184 ~~~~C~ICle~f~~~~~~~~lp-C~H~FH~~CI~~WL~~----~~sCPvCR~~l 232 (374)
.+..|.||.+. + ++.... |...||..|+.+.|.. .-.||.|+..-
T Consensus 6 ~~~~C~~C~~~---g-~ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~ 55 (207)
T 3u5n_A 6 NEDWCAVCQNG---G-DLLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDIG 55 (207)
T ss_dssp SCSSBTTTCCC---E-EEEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCCCCCCCCCC---C-ceEEcCCCCCccCCccCCCCCCCCCCCCEEeCceeCcc
Confidence 45789999653 2 233333 8999999999887753 34799998754
No 90
>3a43_A HYPD, hydrogenase nickel incorporation protein HYPA; [NIFE] hydrogenase maturation, zinc-finger, nickel binding, metal-binding; HET: FME; 2.30A {Pyrococcus kodakaraensis} PDB: 3a44_A*
Probab=78.24 E-value=1.1 Score=38.33 Aligned_cols=36 Identities=25% Similarity=0.587 Sum_probs=25.9
Q ss_pred CCceeecccCcceeeccC--------CCC----------CccCCCCCCCceEEe
Q 017269 5 GLSYWCYRCNRIIRIQSR--------TED----------AIVCPDCHTGFIEQI 40 (374)
Q Consensus 5 ~~~YWCh~C~r~V~~~~~--------~~~----------~~~CP~C~~gFvEEi 40 (374)
...+||..|...+..... ... ...||.|++.-++-+
T Consensus 68 p~~~~C~~CG~~~~~~~~~~~~~~~~~~~~h~~p~~~~~~~~CP~Cgs~~~~i~ 121 (139)
T 3a43_A 68 EAVFKCRNCNYEWKLKEVKDKFDERIKEDIHFIPEVVHAFLACPKCGSHDFEVV 121 (139)
T ss_dssp CCEEEETTTCCEEEGGGCTTCCSCCCGGGCCCCGGGCGGGCSCSSSSCCCEEEE
T ss_pred CCcEECCCCCCEEecccccccccccccccccccccccccCCcCccccCCccEEe
Confidence 468999999998876420 002 478999999988744
No 91
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=78.15 E-value=0.26 Score=35.95 Aligned_cols=47 Identities=28% Similarity=0.715 Sum_probs=32.7
Q ss_pred CCCcccccCCccccCCCeEEcc-ccCccchhhHHHHHhc----CCCCCccCccCCC
Q 017269 184 KESHCAVCKEPFQLNSEAREMP-CKHIYHGECILPWLSM----RNSCPLCRRELPN 234 (374)
Q Consensus 184 ~~~~C~ICle~f~~~~~~~~lp-C~H~FH~~CI~~WL~~----~~sCPvCR~~l~~ 234 (374)
.+..|.||.+. + .+.... |...||..|+.+-|.. .-.||.|......
T Consensus 4 ~~~~C~vC~~~---g-~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~~~ 55 (60)
T 2puy_A 4 HEDFCSVCRKS---G-QLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQDQMLK 55 (60)
T ss_dssp CCSSCTTTCCC---S-SCEECSSSSCEECGGGSSSCCSSCCCSCCCCHHHHHHHHH
T ss_pred CCCCCcCCCCC---C-cEEEcCCCCcCEECCcCCCCcCCCCCCceEChhccChhhc
Confidence 46789999763 3 333333 9999999999976642 3369999765543
No 92
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=77.76 E-value=0.65 Score=36.59 Aligned_cols=51 Identities=24% Similarity=0.604 Sum_probs=34.9
Q ss_pred CCcccccCCcccc-CCCeEEcc-ccCccchhhHHHHHh--------cCCCCCccCccCCCC
Q 017269 185 ESHCAVCKEPFQL-NSEAREMP-CKHIYHGECILPWLS--------MRNSCPLCRRELPNE 235 (374)
Q Consensus 185 ~~~C~ICle~f~~-~~~~~~lp-C~H~FH~~CI~~WL~--------~~~sCPvCR~~l~~~ 235 (374)
+..|.||...-.. .+.+...- |...||..|+.+=|. ..-.|+.|.......
T Consensus 16 ~~~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~~~~~ 76 (88)
T 1wev_A 16 GLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQMKRM 76 (88)
T ss_dssp CCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHHHCCS
T ss_pred CCcCCCCCCCCCCCCCceEECCCCCCeEcCccCCCcccccccCCCCCCeeCccccchhhhh
Confidence 4689999875322 23444444 999999999998664 234799997765444
No 93
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=77.54 E-value=0.9 Score=36.83 Aligned_cols=46 Identities=30% Similarity=0.634 Sum_probs=30.3
Q ss_pred CCCcccccCCccccCCCeEEccccCccchhhHHHHHhc----CCCCCccC
Q 017269 184 KESHCAVCKEPFQLNSEAREMPCKHIYHGECILPWLSM----RNSCPLCR 229 (374)
Q Consensus 184 ~~~~C~ICle~f~~~~~~~~lpC~H~FH~~CI~~WL~~----~~sCPvCR 229 (374)
.+..|.||.+.-+..+-+.--.|...||..||...+.. .-.||.|+
T Consensus 6 ~~~~C~~C~~~g~~~~ll~C~~C~~~~H~~Cl~~~~~~~~~~~W~C~~C~ 55 (111)
T 2ysm_A 6 SGANCAVCDSPGDLLDQFFCTTCGQHYHGMCLDIAVTPLKRAGWQCPECK 55 (111)
T ss_dssp CCSCBTTTCCCCCTTTSEECSSSCCEECTTTTTCCCCTTTSTTCCCTTTC
T ss_pred CCCCCcCCCCCCCCcCCeECCCCCCCcChHHhCCccccccccCccCCcCC
Confidence 46789999775322222333349999999999987742 23577764
No 94
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=77.15 E-value=0.83 Score=33.88 Aligned_cols=44 Identities=30% Similarity=0.639 Sum_probs=31.1
Q ss_pred CCCcccccCCccccCCCeEEcc-ccCccchhhHHHHHhc----CCCCCccCcc
Q 017269 184 KESHCAVCKEPFQLNSEAREMP-CKHIYHGECILPWLSM----RNSCPLCRRE 231 (374)
Q Consensus 184 ~~~~C~ICle~f~~~~~~~~lp-C~H~FH~~CI~~WL~~----~~sCPvCR~~ 231 (374)
.+..|.||.+. + .+.... |...||..|+.+-|.. .-.||.|...
T Consensus 7 ~~~~C~vC~~~---g-~ll~CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~~ 55 (66)
T 1xwh_A 7 NEDECAVCRDG---G-ELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQA 55 (66)
T ss_dssp CCCSBSSSSCC---S-SCEECSSCCCEECTTTSSSCCSSCCSSCCCCHHHHHT
T ss_pred CCCCCccCCCC---C-CEEEcCCCChhhcccccCCCcCcCCCCCeECccccCc
Confidence 46789999763 3 333433 9999999999876642 3369999653
No 95
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=72.19 E-value=2.3 Score=32.98 Aligned_cols=36 Identities=22% Similarity=0.569 Sum_probs=26.5
Q ss_pred CCceeecccCcceeeccCCCCCccCCCCCCCceEEec
Q 017269 5 GLSYWCYRCNRIIRIQSRTEDAIVCPDCHTGFIEQIE 41 (374)
Q Consensus 5 ~~~YWCh~C~r~V~~~~~~~~~~~CP~C~~gFvEEi~ 41 (374)
...+||-.|...|.... ....+.||.|+.-|-=.-.
T Consensus 23 ~~~~wCP~C~~~~~~~~-~~~~v~C~~C~~~FC~~C~ 58 (86)
T 2ct7_A 23 PKFLWCAQCSFGFIYER-EQLEATCPQCHQTFCVRCK 58 (86)
T ss_dssp CCEECCSSSCCCEECCC-SCSCEECTTTCCEECSSSC
T ss_pred CCEeECcCCCchheecC-CCCceEeCCCCCccccccC
Confidence 46789999999886653 2445899999988875443
No 96
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=71.85 E-value=2.6 Score=32.20 Aligned_cols=46 Identities=26% Similarity=0.642 Sum_probs=30.5
Q ss_pred CcccccCCccccCCCeEEcc-ccCccchhhHHHHHh-----cCCCCCccCccC
Q 017269 186 SHCAVCKEPFQLNSEAREMP-CKHIYHGECILPWLS-----MRNSCPLCRREL 232 (374)
Q Consensus 186 ~~C~ICle~f~~~~~~~~lp-C~H~FH~~CI~~WL~-----~~~sCPvCR~~l 232 (374)
..| ||...+..+...+..- |...||..|+.--.. ..-.||.|+...
T Consensus 13 ~~C-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~ 64 (79)
T 1wep_A 13 VYC-LCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAVF 64 (79)
T ss_dssp CCS-TTSCSCCSSSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTTS
T ss_pred cEE-EcCCccCCCCceEEcCCCCCcEEeeecCcccccccCCCeEECCCccccc
Confidence 456 9988765344444444 999999999853221 234799997653
No 97
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=71.40 E-value=1.7 Score=35.48 Aligned_cols=45 Identities=24% Similarity=0.508 Sum_probs=29.6
Q ss_pred CcccccCCccccCCCeEEcc-ccCccchhhHHHHHhc----CCCCCccCc
Q 017269 186 SHCAVCKEPFQLNSEAREMP-CKHIYHGECILPWLSM----RNSCPLCRR 230 (374)
Q Consensus 186 ~~C~ICle~f~~~~~~~~lp-C~H~FH~~CI~~WL~~----~~sCPvCR~ 230 (374)
..|.||.+.-...+.+..-. |...||..|+.+-|.. .-.||.|+.
T Consensus 62 ~~C~vC~~~~~~~~~ll~Cd~C~~~yH~~Cl~p~l~~~P~~~W~C~~C~~ 111 (112)
T 3v43_A 62 KTCSSCRDQGKNADNMLFCDSCDRGFHMECCDPPLTRMPKGMWICQICRP 111 (112)
T ss_dssp CCBTTTCCCCCTTCCCEECTTTCCEECGGGCSSCCSSCCSSCCCCTTTSC
T ss_pred CccccccCcCCCccceEEcCCCCCeeecccCCCCCCCCCCCCeECCCCCC
Confidence 36888876422222333333 9999999999876643 237999975
No 98
>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=71.35 E-value=2.1 Score=31.91 Aligned_cols=35 Identities=23% Similarity=0.587 Sum_probs=28.9
Q ss_pred CCceeecccCcceeeccCCCCCccCCCCCCCceEEec
Q 017269 5 GLSYWCYRCNRIIRIQSRTEDAIVCPDCHTGFIEQIE 41 (374)
Q Consensus 5 ~~~YWCh~C~r~V~~~~~~~~~~~CP~C~~gFvEEi~ 41 (374)
.-.|-|-.|...|.+. ..+.+.||.|+.-.|-..-
T Consensus 19 ~v~Y~C~~Cg~~~~l~--~~~~iRC~~CG~RILyK~R 53 (63)
T 3h0g_L 19 TMIYLCADCGARNTIQ--AKEVIRCRECGHRVMYKMR 53 (63)
T ss_dssp CCCCBCSSSCCBCCCC--SSSCCCCSSSCCCCCBCCC
T ss_pred CeEEECCCCCCeeecC--CCCceECCCCCcEEEEEec
Confidence 3579999999999876 4577999999998887543
No 99
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=71.23 E-value=2.4 Score=32.16 Aligned_cols=33 Identities=27% Similarity=0.699 Sum_probs=26.9
Q ss_pred CCceeecccCcceeeccCCCCCccCCCCCCCceEE
Q 017269 5 GLSYWCYRCNRIIRIQSRTEDAIVCPDCHTGFIEQ 39 (374)
Q Consensus 5 ~~~YWCh~C~r~V~~~~~~~~~~~CP~C~~gFvEE 39 (374)
.-.|-|-.|...+.+. ..+.+.||.|+.-.|-.
T Consensus 26 ~v~Y~C~~CG~~~e~~--~~d~irCp~CG~RILyK 58 (70)
T 1twf_L 26 TLKYICAECSSKLSLS--RTDAVRCKDCGHRILLK 58 (70)
T ss_dssp CCCEECSSSCCEECCC--TTSTTCCSSSCCCCCBC
T ss_pred eEEEECCCCCCcceeC--CCCCccCCCCCceEeEe
Confidence 4679999999998887 56779999999966543
No 100
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=70.58 E-value=1.2 Score=35.14 Aligned_cols=53 Identities=15% Similarity=0.260 Sum_probs=33.7
Q ss_pred cCCCcccccCCccc-cCCCeEEcc-ccCccchhhHHHHH--hcCCCCCccCccCCCC
Q 017269 183 AKESHCAVCKEPFQ-LNSEAREMP-CKHIYHGECILPWL--SMRNSCPLCRRELPNE 235 (374)
Q Consensus 183 ~~~~~C~ICle~f~-~~~~~~~lp-C~H~FH~~CI~~WL--~~~~sCPvCR~~l~~~ 235 (374)
..+..|.||.+.-. ..+.+.... |.-.||..|+.+-+ +..-.||.|.......
T Consensus 23 ~~~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p~~vP~g~W~C~~C~~~~~~~ 79 (88)
T 2l43_A 23 DEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQSRARP 79 (88)
T ss_dssp CCCCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTCSSCCSSCCCCHHHHHHTTSC
T ss_pred CCCCcCCcCCCCCCCCCCCEEECCCCCchhhcccCCCCccCCCceECccccCccchh
Confidence 34578999986531 122333333 88999999998643 2334799997654443
No 101
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=70.51 E-value=3.6 Score=35.36 Aligned_cols=44 Identities=23% Similarity=0.505 Sum_probs=31.1
Q ss_pred cCCCcccccCCccccCCCeEEc-cccCccchhhHHHHHh-----------cCCCCCccCc
Q 017269 183 AKESHCAVCKEPFQLNSEAREM-PCKHIYHGECILPWLS-----------MRNSCPLCRR 230 (374)
Q Consensus 183 ~~~~~C~ICle~f~~~~~~~~l-pC~H~FH~~CI~~WL~-----------~~~sCPvCR~ 230 (374)
..++.|.||.+. | ++... .|...||..||.+-|. ..-.||+|+.
T Consensus 61 g~~d~C~vC~~G---G-~LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~ 116 (142)
T 2lbm_A 61 GMDEQCRWCAEG---G-NLICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHP 116 (142)
T ss_dssp SCBCSCSSSCCC---S-SEEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCC
T ss_pred CCCCeecccCCC---C-cEEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccC
Confidence 346889999663 3 33333 3999999999998763 1237999964
No 102
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=69.71 E-value=1.3 Score=39.55 Aligned_cols=44 Identities=32% Similarity=0.668 Sum_probs=30.5
Q ss_pred CCcccccCCccccCCCeEEccccCccchhhHHHHHhc----CCCCCccCcc
Q 017269 185 ESHCAVCKEPFQLNSEAREMPCKHIYHGECILPWLSM----RNSCPLCRRE 231 (374)
Q Consensus 185 ~~~C~ICle~f~~~~~~~~lpC~H~FH~~CI~~WL~~----~~sCPvCR~~ 231 (374)
+..|.||.+. ++-+.--.|...||..|+.+=|.. .-.||.|+..
T Consensus 2 ~~~C~~C~~~---g~ll~Cd~C~~~~H~~Cl~p~l~~~p~g~W~C~~C~~~ 49 (189)
T 2ro1_A 2 ATICRVCQKP---GDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 49 (189)
T ss_dssp CCCBTTTCCC---SSCCCCTTTCCBCCSTTSTTCCSSCCCTTCCTTTTSCS
T ss_pred CCcCccCCCC---CceeECCCCCchhccccCCCCcccCCCCCCCCcCccCC
Confidence 4679999753 332222238899999999876642 2379999875
No 103
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=68.32 E-value=2.5 Score=29.77 Aligned_cols=43 Identities=16% Similarity=0.349 Sum_probs=28.6
Q ss_pred cccccCCccccCCCeEEc--cccCccchhhHHHHH----hcCCCCCccC
Q 017269 187 HCAVCKEPFQLNSEAREM--PCKHIYHGECILPWL----SMRNSCPLCR 229 (374)
Q Consensus 187 ~C~ICle~f~~~~~~~~l--pC~H~FH~~CI~~WL----~~~~sCPvCR 229 (374)
.|.||...+..+...+.- -|..-||..|+.--. ..+-.||.|+
T Consensus 4 ~cc~C~~p~~~~~~mI~Cd~~C~~WfH~~Cvgl~~~~~~~~~~~C~~C~ 52 (52)
T 2kgg_A 4 AAQNCQRPCKDKVDWVQCDGGCDEWFHQVCVGVSPEMAENEDYICINCA 52 (52)
T ss_dssp SCTTCCCCCCTTCCEEECTTTTCCEEETTTTTCCHHHHHHSCCCCSCC-
T ss_pred cCCCCcCccCCCCcEEEeCCCCCccCcccccCCCccccCCCCEECCCCC
Confidence 478888877544444443 388899999976432 2455899885
No 104
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=67.06 E-value=7.2 Score=38.60 Aligned_cols=48 Identities=21% Similarity=0.510 Sum_probs=32.4
Q ss_pred CcccccCCccccCCCeEEccccCccchhhHHHHH---hc--CCCCCccCccCCCCC
Q 017269 186 SHCAVCKEPFQLNSEAREMPCKHIYHGECILPWL---SM--RNSCPLCRRELPNEA 236 (374)
Q Consensus 186 ~~C~ICle~f~~~~~~~~lpC~H~FH~~CI~~WL---~~--~~sCPvCR~~l~~~~ 236 (374)
..|+|-+..|+ ..++-..|.|+-|++- ..|| .+ .-.||+|...+...+
T Consensus 250 L~CPlS~~ri~--~PvRg~~C~HlQCFDl-~sfL~~~~~~~~W~CPIC~k~~~~~d 302 (371)
T 3i2d_A 250 LQCPISYTRMK--YPSKSINCKHLQCFDA-LWFLHSQLQIPTWQCPVCQIDIALEN 302 (371)
T ss_dssp SBCTTTSSBCS--SEEEETTCCSSCCEEH-HHHHHHHHHSCCCBCTTTCCBCCGGG
T ss_pred ecCCCcccccc--ccCcCCcCCCcceECH-HHHHHHhhcCCceeCCCCCcccCHHH
Confidence 67998877765 3677777999955432 3344 22 337999988875554
No 105
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=65.46 E-value=7.4 Score=31.54 Aligned_cols=46 Identities=20% Similarity=0.395 Sum_probs=28.3
Q ss_pred CCCcccccCCccc-----cCCCeEEcc-ccCccchhhHHHH------H-hcCCCCCccC
Q 017269 184 KESHCAVCKEPFQ-----LNSEAREMP-CKHIYHGECILPW------L-SMRNSCPLCR 229 (374)
Q Consensus 184 ~~~~C~ICle~f~-----~~~~~~~lp-C~H~FH~~CI~~W------L-~~~~sCPvCR 229 (374)
....|.+|+..-. .++++..-. |...||..||..+ + +..-.||.|+
T Consensus 4 p~~~C~~C~~~~~~~~~g~~~~Ll~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~ 62 (112)
T 3v43_A 4 PIPICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLKFSPELTVRVKALRWQCIECK 62 (112)
T ss_dssp CCSSBTTTCCCTTCCTTSCCCCCEECTTTCCEECHHHHTCCHHHHHHHHTSCCCCTTTC
T ss_pred cCccccccCCchhhCcCCCchhceEhhhcCCCCCCchhcCCHHHHHHhhccccccccCC
Confidence 3467999987521 122333333 9999999999532 2 2334677775
No 106
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=65.40 E-value=6.1 Score=33.42 Aligned_cols=44 Identities=23% Similarity=0.573 Sum_probs=29.7
Q ss_pred cCCCcccccCCccccCCCeEEcc-ccCccchhhHHHHH------hc-----CCCCCccCc
Q 017269 183 AKESHCAVCKEPFQLNSEAREMP-CKHIYHGECILPWL------SM-----RNSCPLCRR 230 (374)
Q Consensus 183 ~~~~~C~ICle~f~~~~~~~~lp-C~H~FH~~CI~~WL------~~-----~~sCPvCR~ 230 (374)
..++.|.||.+. + ++..-. |...||..||.+-| +. .-.|++|+.
T Consensus 55 g~~~~C~vC~dG---G-~LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~ 110 (129)
T 3ql9_A 55 GMDEQCRWCAEG---G-NLICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHP 110 (129)
T ss_dssp SCBSSCTTTCCC---S-EEEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCC
T ss_pred CCCCcCeecCCC---C-eeEecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCC
Confidence 345779999764 2 232222 89999999999863 11 237999954
No 107
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=63.86 E-value=2.8 Score=31.71 Aligned_cols=48 Identities=19% Similarity=0.317 Sum_probs=31.3
Q ss_pred cCCCcccccCCcc-ccCCCeEEcc-ccCccchhhHHHHH--hcCCCCCccCc
Q 017269 183 AKESHCAVCKEPF-QLNSEAREMP-CKHIYHGECILPWL--SMRNSCPLCRR 230 (374)
Q Consensus 183 ~~~~~C~ICle~f-~~~~~~~~lp-C~H~FH~~CI~~WL--~~~~sCPvCR~ 230 (374)
..+..|.||.+.- ...+...... |.-.||..|+..-+ +..-.||.|+.
T Consensus 14 ~~~~~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~~~~vP~g~W~C~~C~~ 65 (71)
T 2ku3_A 14 DEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQ 65 (71)
T ss_dssp CSSCSCSSSCCCCCCSSSCEEECSSSCCEEEHHHHTCSSCCSSCCCCHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCCCccccccCCCCcCCCCCcCCccCcC
Confidence 3467899998753 2233444444 99999999997543 22336888854
No 108
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=62.38 E-value=5 Score=29.76 Aligned_cols=32 Identities=19% Similarity=0.485 Sum_probs=24.5
Q ss_pred CCcccccCCccccCCCeEEc--cccCccchhhHH
Q 017269 185 ESHCAVCKEPFQLNSEAREM--PCKHIYHGECIL 216 (374)
Q Consensus 185 ~~~C~ICle~f~~~~~~~~l--pC~H~FH~~CI~ 216 (374)
...|.+|...+..+...+.. .|.-.||..|+.
T Consensus 8 ~~~C~~C~~p~~~~~~mI~CD~~C~~WfH~~Cvg 41 (65)
T 2vpb_A 8 VYPCGICTNEVNDDQDAILCEASCQKWFHRICTG 41 (65)
T ss_dssp -CBCTTTCSBCCTTSCEEEBTTTTCCEEEHHHHT
T ss_pred cCcCccCCCccCCCCCeEecccCccccCchhccC
Confidence 46799999988765555554 499999999974
No 109
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=61.89 E-value=1.5 Score=34.83 Aligned_cols=47 Identities=28% Similarity=0.453 Sum_probs=31.6
Q ss_pred CCCcccccCCccccCCCeEEcc-ccCccchhhHHHHHhc----CCCCCccCcc
Q 017269 184 KESHCAVCKEPFQLNSEAREMP-CKHIYHGECILPWLSM----RNSCPLCRRE 231 (374)
Q Consensus 184 ~~~~C~ICle~f~~~~~~~~lp-C~H~FH~~CI~~WL~~----~~sCPvCR~~ 231 (374)
.+..|.||...-.. +.+.... |...||..|+.+=|.. .-.||.|...
T Consensus 15 ~~~~C~vC~~~~~~-~~ll~CD~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~~ 66 (92)
T 2e6r_A 15 DSYICQVCSRGDED-DKLLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCILA 66 (92)
T ss_dssp CCCCCSSSCCSGGG-GGCEECTTTCCEECSSSSSSCCSSCCSSCCCCHHHHHH
T ss_pred CCCCCccCCCcCCC-CCEEEcCCCCchhccccCCCCcccCCCCCcCCccCcCc
Confidence 35679999875321 2333333 9999999999865532 3369999664
No 110
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=61.04 E-value=2.8 Score=33.54 Aligned_cols=43 Identities=16% Similarity=0.281 Sum_probs=28.0
Q ss_pred CcccccCCccccCCCeEEcc-ccCccchhhHHHHHhc---CCCCCccCc
Q 017269 186 SHCAVCKEPFQLNSEAREMP-CKHIYHGECILPWLSM---RNSCPLCRR 230 (374)
Q Consensus 186 ~~C~ICle~f~~~~~~~~lp-C~H~FH~~CI~~WL~~---~~sCPvCR~ 230 (374)
..| ||......+ ..+... |...||..|+..=+.. .-.||.|+.
T Consensus 29 vrC-iC~~~~~~~-~mi~Cd~C~~w~H~~C~~~~~~~~p~~w~C~~C~~ 75 (98)
T 2lv9_A 29 TRC-ICGFTHDDG-YMICCDKCSVWQHIDCMGIDRQHIPDTYLCERCQP 75 (98)
T ss_dssp CCC-TTSCCSCSS-CEEEBTTTCBEEETTTTTCCTTSCCSSBCCTTTSS
T ss_pred EEe-ECCCccCCC-cEEEcCCCCCcCcCcCCCCCccCCCCCEECCCCcC
Confidence 457 887655433 333333 9999999999764432 237999964
No 111
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=59.15 E-value=5 Score=32.46 Aligned_cols=47 Identities=23% Similarity=0.473 Sum_probs=33.4
Q ss_pred CcccccCCccccCCCeEEc--cccCccchhhHHHHH----------hcCCCCCccCccC
Q 017269 186 SHCAVCKEPFQLNSEAREM--PCKHIYHGECILPWL----------SMRNSCPLCRREL 232 (374)
Q Consensus 186 ~~C~ICle~f~~~~~~~~l--pC~H~FH~~CI~~WL----------~~~~sCPvCR~~l 232 (374)
..|.||...+......+.. -|...||..|+.--. ...-.||.|+...
T Consensus 4 ~~C~iC~~p~~~~~~mi~Cdd~C~~WfH~~CVglt~~~~~~i~~~~~~~~~Cp~C~~~~ 62 (105)
T 2xb1_A 4 YPCGACRSEVNDDQDAILCEASCQKWFHRECTGMTESAYGLLTTEASAVWACDLCLKTK 62 (105)
T ss_dssp CBCTTTCSBCCTTSCEEECTTTTCCEEEGGGTTCCHHHHHHHHHCTTEEECCHHHHHTT
T ss_pred CCCCCCCCccCCCCCEEEecCCcccccccccCCcCHHHHHhhccCCCCCEECccccCcC
Confidence 5799999988655555555 389999999985321 0334799997653
No 112
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=58.57 E-value=2.1 Score=37.18 Aligned_cols=46 Identities=26% Similarity=0.579 Sum_probs=30.7
Q ss_pred CCcccccCCccccCCCeEEcc-ccCccchhhHHHHH-----hcCCCCCccCcc
Q 017269 185 ESHCAVCKEPFQLNSEAREMP-CKHIYHGECILPWL-----SMRNSCPLCRRE 231 (374)
Q Consensus 185 ~~~C~ICle~f~~~~~~~~lp-C~H~FH~~CI~~WL-----~~~~sCPvCR~~ 231 (374)
...| ||......+...+... |...||..|+.--. ...-.||.|+..
T Consensus 8 ~~~C-~C~~~~~~~~~mi~Cd~C~~WfH~~Cv~~~~~~~~~~~~~~C~~C~~~ 59 (174)
T 2ri7_A 8 KLYC-ICKTPEDESKFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQCQST 59 (174)
T ss_dssp CEET-TTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTCSSCCCHHHHHH
T ss_pred CcEe-eCCCCCCCCCCEeECCCCCchhChhhcCCchhhccCccCeecCCCcch
Confidence 4668 9988754333444444 99999999985322 124479999764
No 113
>2con_A RUH-035 protein, NIN one binding protein; ribosome, RNA binding protein, unknown function, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.41.15.1
Probab=57.54 E-value=7.3 Score=30.26 Aligned_cols=32 Identities=13% Similarity=0.418 Sum_probs=25.4
Q ss_pred ceeecccCcceeeccCCCCCccCCCCCCCceEEecc
Q 017269 7 SYWCYRCNRIIRIQSRTEDAIVCPDCHTGFIEQIET 42 (374)
Q Consensus 7 ~YWCh~C~r~V~~~~~~~~~~~CP~C~~gFvEEi~~ 42 (374)
-+.||.|-..... ..-.+||.|+..=|..+.-
T Consensus 15 iLrC~aCf~~t~~----~~k~FCp~CGn~TL~Rvsv 46 (79)
T 2con_A 15 ILRCHGCFKTTSD----MNRVFCGHCGNKTLKKVSV 46 (79)
T ss_dssp EEECSSSCCEESC----SSCCSCSSSCCSCCEEEEC
T ss_pred eeEecccceECCC----cccccccccCcccceEEEE
Confidence 3689999987643 2457999999999998864
No 114
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=56.08 E-value=2.1 Score=32.12 Aligned_cols=45 Identities=18% Similarity=0.210 Sum_probs=29.5
Q ss_pred CcccccCCccccCCCeEEcc-ccCccchhhHHHHH----hcCCCCCccCcc
Q 017269 186 SHCAVCKEPFQLNSEAREMP-CKHIYHGECILPWL----SMRNSCPLCRRE 231 (374)
Q Consensus 186 ~~C~ICle~f~~~~~~~~lp-C~H~FH~~CI~~WL----~~~~sCPvCR~~ 231 (374)
..| ||......+...+..- |...||..|+.--. ...-.||.|+..
T Consensus 17 ~~C-~C~~~~~~g~~mI~Cd~C~~W~H~~Cvg~~~~~~~~~~~~C~~C~~~ 66 (72)
T 1wee_A 17 VDC-KCGTKDDDGERMLACDGCGVWHHTRCIGINNADALPSKFLCFRCIEL 66 (72)
T ss_dssp ECC-TTCCCSCCSSCEEECSSSCEEEETTTTTCCTTSCCCSCCCCHHHHHH
T ss_pred eEe-eCCCccCCCCcEEECCCCCCccCCeeeccCccccCCCcEECCCccCC
Confidence 568 7987654443344444 99999999986432 233479999654
No 115
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=55.58 E-value=7 Score=29.42 Aligned_cols=43 Identities=26% Similarity=0.573 Sum_probs=26.6
Q ss_pred CCcccccCCccccCCCeEEcc---cc-CccchhhHHHHHh----cCCCCCccCccC
Q 017269 185 ESHCAVCKEPFQLNSEAREMP---CK-HIYHGECILPWLS----MRNSCPLCRREL 232 (374)
Q Consensus 185 ~~~C~ICle~f~~~~~~~~lp---C~-H~FH~~CI~~WL~----~~~sCPvCR~~l 232 (374)
...| ||..... + ..+..- |. ..||..|+. |. ..-.||.|+...
T Consensus 16 ~~~C-~C~~~~~-g-~MI~CD~~~C~~~wfH~~Cvg--l~~~p~g~w~Cp~C~~~~ 66 (71)
T 1wen_A 16 PTYC-LCHQVSY-G-EMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQES 66 (71)
T ss_dssp CCCS-TTCCCSC-S-SEECCSCSSCSCCCEETTTTT--CSSCCSSCCCCTTTSSCS
T ss_pred CCEE-ECCCCCC-C-CEeEeeCCCCCCccEecccCC--cCcCCCCCEECCCCCccc
Confidence 4567 8987532 3 222221 55 589999997 43 233799997654
No 116
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=54.45 E-value=2.7 Score=32.38 Aligned_cols=43 Identities=28% Similarity=0.548 Sum_probs=25.8
Q ss_pred cccccCCccccCCCeEEcc-ccCccchhhHHHHHhc----C-CCCCccCc
Q 017269 187 HCAVCKEPFQLNSEAREMP-CKHIYHGECILPWLSM----R-NSCPLCRR 230 (374)
Q Consensus 187 ~C~ICle~f~~~~~~~~lp-C~H~FH~~CI~~WL~~----~-~sCPvCR~ 230 (374)
.|.||...-.. +.+..-- |...||..|+.+-|.. . -.||.|+.
T Consensus 28 ~C~vC~~~~d~-~~ll~CD~C~~~yH~~Cl~PpL~~~P~g~~W~C~~C~~ 76 (77)
T 3shb_A 28 ACHLCGGRQDP-DKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 76 (77)
T ss_dssp SBTTTCCCSCG-GGEEECTTTCCEEETTTSSSCCSSCCSSSCCCCTTTC-
T ss_pred cCCccCCCCCC-cceeEeCCCCCccCcccCCCcccCCCCCCceECcCccc
Confidence 46666543211 1222222 8899999999976642 2 47999975
No 117
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=53.25 E-value=7.6 Score=28.57 Aligned_cols=41 Identities=20% Similarity=0.544 Sum_probs=30.6
Q ss_pred CCcccccCCccccCCCeEEccccCccchhhHHHHHhcCCCCCccCccCCCC
Q 017269 185 ESHCAVCKEPFQLNSEAREMPCKHIYHGECILPWLSMRNSCPLCRRELPNE 235 (374)
Q Consensus 185 ~~~C~ICle~f~~~~~~~~lpC~H~FH~~CI~~WL~~~~sCPvCR~~l~~~ 235 (374)
...|+.|.+.+..++.+. .-+..||.+|. .|-.|...|...
T Consensus 9 ~~~C~~C~~~I~~~~~v~--a~~~~~H~~CF--------~C~~C~~~L~~~ 49 (76)
T 2cu8_A 9 ASKCPKCDKTVYFAEKVS--SLGKDWHKFCL--------KCERCSKTLTPG 49 (76)
T ss_dssp CCBCTTTCCBCCTTTEEE--ETTEEEETTTC--------BCSSSCCBCCTT
T ss_pred CCCCcCCCCEeECCeEEE--ECCeEeeCCCC--------CCCCCCCccCCC
Confidence 367999999887655443 35788999885 599998888643
No 118
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=52.37 E-value=9 Score=28.81 Aligned_cols=39 Identities=31% Similarity=0.653 Sum_probs=30.0
Q ss_pred CCcccccCCccccCCCeEEccccCccchhhHHHHHhcCCCCCccCccCC
Q 017269 185 ESHCAVCKEPFQLNSEAREMPCKHIYHGECILPWLSMRNSCPLCRRELP 233 (374)
Q Consensus 185 ~~~C~ICle~f~~~~~~~~lpC~H~FH~~CI~~WL~~~~sCPvCR~~l~ 233 (374)
...|+.|.+.+..++.+..+ +..||.+|+ .|-.|+..|.
T Consensus 15 ~~~C~~C~~~I~~~~~v~a~--~~~wH~~CF--------~C~~C~~~L~ 53 (80)
T 2dj7_A 15 PSHCAGCKEEIKHGQSLLAL--DKQWHVSCF--------KCQTCSVILT 53 (80)
T ss_dssp CSCCTTTCCCCSSSCCEEET--TEEECTTTC--------BCSSSCCBCS
T ss_pred CCCCcCcCCeeCCCeEEEEC--CcccccccC--------CcCcCCCCcC
Confidence 46799999988766655544 788999885 5889988775
No 119
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=51.28 E-value=48 Score=26.34 Aligned_cols=51 Identities=16% Similarity=0.334 Sum_probs=35.9
Q ss_pred CCcccccCCccccCC--CeE--EccccCccchhhHHHHH-hcCCCCCccCccCCCC
Q 017269 185 ESHCAVCKEPFQLNS--EAR--EMPCKHIYHGECILPWL-SMRNSCPLCRRELPNE 235 (374)
Q Consensus 185 ~~~C~ICle~f~~~~--~~~--~lpC~H~FH~~CI~~WL-~~~~sCPvCR~~l~~~ 235 (374)
...|.||-+++-... ++. -..|.--.|..|..-=. +.++.||-|++.+...
T Consensus 16 ~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYkr~ 71 (93)
T 1weo_A 16 GQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYKRL 71 (93)
T ss_dssp SCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCCCC
T ss_pred CCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCccccc
Confidence 468999999864332 122 22378888999987655 4678999999987643
No 120
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=50.34 E-value=12 Score=29.75 Aligned_cols=43 Identities=23% Similarity=0.568 Sum_probs=26.4
Q ss_pred CCcccccCCccccCCCeEEc-c--cc-CccchhhHHHHHhc----CCCCCccCccC
Q 017269 185 ESHCAVCKEPFQLNSEAREM-P--CK-HIYHGECILPWLSM----RNSCPLCRREL 232 (374)
Q Consensus 185 ~~~C~ICle~f~~~~~~~~l-p--C~-H~FH~~CI~~WL~~----~~sCPvCR~~l 232 (374)
...| ||..... +. .+.. . |. ..||..|+. |.. +-.||.|+...
T Consensus 36 ~~yC-iC~~~~~-g~-MI~CD~~dC~~~WfH~~CVg--l~~~p~g~W~Cp~C~~~~ 86 (91)
T 1weu_A 36 PTYC-LCHQVSY-GE-MIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQES 86 (91)
T ss_dssp CBCS-TTCCBCC-SC-CCCCSCSSCSCCCCCSTTTT--CSSCCCSSCCCTTTCCCC
T ss_pred CcEE-ECCCCCC-CC-EeEecCCCCCCCCEecccCC--cCcCCCCCEECcCccCcC
Confidence 3557 9987542 32 2111 1 55 579999997 432 34799997653
No 121
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=49.02 E-value=4.9 Score=30.25 Aligned_cols=44 Identities=25% Similarity=0.581 Sum_probs=28.8
Q ss_pred CcccccCCccccCCCeEEcc-ccCccchhhHHHHH---------hcCCCCCccCcc
Q 017269 186 SHCAVCKEPFQLNSEAREMP-CKHIYHGECILPWL---------SMRNSCPLCRRE 231 (374)
Q Consensus 186 ~~C~ICle~f~~~~~~~~lp-C~H~FH~~CI~~WL---------~~~~sCPvCR~~ 231 (374)
..| ||...+. +...+..- |...||..|+.--. ...-.||.|+..
T Consensus 17 ~~C-~C~~~~~-~~~MI~Cd~C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~~ 70 (76)
T 1wem_A 17 LYC-ICRQPHN-NRFMICCDRCEEWFHGDCVGISEARGRLLERNGEDYICPNCTIL 70 (76)
T ss_dssp CCS-TTCCCCC-SSCEEECSSSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHHH
T ss_pred CEE-ECCCccC-CCCEEEeCCCCCcEeCeEEccchhhhhhccCCCCeEECcCCcCc
Confidence 456 8988764 22333333 99999999985322 135689999754
No 122
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=48.97 E-value=8.4 Score=30.23 Aligned_cols=36 Identities=17% Similarity=0.341 Sum_probs=28.6
Q ss_pred CCcccccCCccccCCCeEEcc--ccCccchhhHHHHHhc
Q 017269 185 ESHCAVCKEPFQLNSEAREMP--CKHIYHGECILPWLSM 221 (374)
Q Consensus 185 ~~~C~ICle~f~~~~~~~~lp--C~H~FH~~CI~~WL~~ 221 (374)
...|.+|.|.++. ...+..| =.|.||..|-...++.
T Consensus 15 ~l~CtlC~erLEd-tHFVQCPsv~~HkFCFpCsr~sIk~ 52 (93)
T 2cs3_A 15 PLCCTICHERLED-THFVQCPSVPSHKFCFPCSRESIKA 52 (93)
T ss_dssp SCCCSSSCSCCSS-TTSEECSSCSSCEECHHHHHHHHHH
T ss_pred eeEeecchhhhcc-CceeeCCCccCCeeeccccHHHHHh
Confidence 3679999999874 4555666 5799999999999864
No 123
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=48.83 E-value=15 Score=29.85 Aligned_cols=47 Identities=23% Similarity=0.461 Sum_probs=31.0
Q ss_pred cCCCcccccCCccccCCCeEEcc---ccCccchhhHHHHHhc----CCCCCccCccCCCC
Q 017269 183 AKESHCAVCKEPFQLNSEAREMP---CKHIYHGECILPWLSM----RNSCPLCRRELPNE 235 (374)
Q Consensus 183 ~~~~~C~ICle~f~~~~~~~~lp---C~H~FH~~CI~~WL~~----~~sCPvCR~~l~~~ 235 (374)
..+..|.||.+. + ++..-. |...||..|+. |.. .-.||.|.-.+...
T Consensus 13 ~~~~~C~~C~~~---G-~ll~CD~~~Cp~~fH~~Cl~--L~~~P~g~W~Cp~c~C~~C~k 66 (107)
T 4gne_A 13 MHEDYCFQCGDG---G-ELVMCDKKDCPKAYHLLCLN--LTQPPYGKWECPWHQCDECSS 66 (107)
T ss_dssp SSCSSCTTTCCC---S-EEEECCSTTCCCEECTGGGT--CSSCCSSCCCCGGGBCTTTCS
T ss_pred CCCCCCCcCCCC---C-cEeEECCCCCCcccccccCc--CCcCCCCCEECCCCCCCcCCC
Confidence 346789999742 2 343433 77999999997 543 23699887655444
No 124
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=48.62 E-value=4.9 Score=30.82 Aligned_cols=44 Identities=27% Similarity=0.518 Sum_probs=28.9
Q ss_pred CcccccCCccccCCCeEEcc-ccCccchhhHHHHHhc-----CCCCCccCc
Q 017269 186 SHCAVCKEPFQLNSEAREMP-CKHIYHGECILPWLSM-----RNSCPLCRR 230 (374)
Q Consensus 186 ~~C~ICle~f~~~~~~~~lp-C~H~FH~~CI~~WL~~-----~~sCPvCR~ 230 (374)
..|.||...- .+..+...- |...||..|+.+=|.. .-.||.|..
T Consensus 27 c~C~vC~~~~-~~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 76 (77)
T 2e6s_A 27 CSCRVCGGKH-EPNMQLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSCKT 76 (77)
T ss_dssp SSCSSSCCCC-CSTTEEECSSSCCEEETTSSSSCCSSCCCSSCCCCTTTCC
T ss_pred CCCcCcCCcC-CCCCEEEcCCCCccccccccCCCccCCCCCCCcCCcCccC
Confidence 4788897532 223444443 9999999999865532 336998864
No 125
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=48.48 E-value=7.2 Score=28.70 Aligned_cols=38 Identities=18% Similarity=0.638 Sum_probs=21.8
Q ss_pred cccccCCccccCCCeEEccccCccchhhHHHHHhcCCCCCccCccCCC
Q 017269 187 HCAVCKEPFQLNSEAREMPCKHIYHGECILPWLSMRNSCPLCRRELPN 234 (374)
Q Consensus 187 ~C~ICle~f~~~~~~~~lpC~H~FH~~CI~~WL~~~~sCPvCR~~l~~ 234 (374)
.|+.|.+.+..++.+..+ +..||.+|. .|-.|...|..
T Consensus 2 ~C~~C~~~I~~~~~v~a~--~~~~H~~CF--------~C~~C~~~L~~ 39 (76)
T 1iml_A 2 KCPKCDKEVYFAERVTSL--GKDWHRPCL--------KCEKCGKTLTS 39 (76)
T ss_dssp BCTTTSSBCCGGGEEEET--TEEEETTTC--------BCTTTCCBCCT
T ss_pred cCCCCCCEEECceEEEEC--CccccCCCC--------CccccCccCCC
Confidence 366776665544433333 667777663 46677666544
No 126
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=48.39 E-value=4.9 Score=30.15 Aligned_cols=43 Identities=28% Similarity=0.526 Sum_probs=27.1
Q ss_pred cccccCCccccCCCeEEcc-ccCccchhhHHHHHhc-----CCCCCccCc
Q 017269 187 HCAVCKEPFQLNSEAREMP-CKHIYHGECILPWLSM-----RNSCPLCRR 230 (374)
Q Consensus 187 ~C~ICle~f~~~~~~~~lp-C~H~FH~~CI~~WL~~-----~~sCPvCR~ 230 (374)
.|.||...- .+..+..-- |...||..|+.+=|.. .-.||.|+.
T Consensus 20 ~C~~C~~~~-~~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 68 (70)
T 3asl_A 20 ACHLCGGRQ-DPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 68 (70)
T ss_dssp SBTTTCCCS-CGGGEEECTTTCCEEEGGGSSSCCSSCCSSSCCCCTTTSC
T ss_pred CCcCCCCcC-CCCCEEEcCCCCCceecccCCCCcCCCCCCCCcCCcCccC
Confidence 466776431 122333333 8899999999865532 337999965
No 127
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=47.27 E-value=12 Score=36.81 Aligned_cols=51 Identities=20% Similarity=0.445 Sum_probs=33.1
Q ss_pred CCcccccCCccccCCCeEEccccCc--cchhhHHHHHhc--CCCCCccCccCCCCCC
Q 017269 185 ESHCAVCKEPFQLNSEAREMPCKHI--YHGECILPWLSM--RNSCPLCRRELPNEAN 237 (374)
Q Consensus 185 ~~~C~ICle~f~~~~~~~~lpC~H~--FH~~CI~~WL~~--~~sCPvCR~~l~~~~~ 237 (374)
...|+|-+..|+ ..++-..|.|. |-..=+.....+ .-.||+|...+..++.
T Consensus 215 SL~CPlS~~ri~--~P~Rg~~C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~~~dL 269 (360)
T 4fo9_A 215 SLMCPLGKMRLT--IPCRAVTCTHLQCFDAALYLQMNEKKPTWICPVCDKKAAYESL 269 (360)
T ss_dssp ESBCTTTCSBCS--SEEEETTCCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCCGGGE
T ss_pred eeeCCCccceec--cCCcCCCCCCCccCCHHHHHHHHhhCCCeECCCCCcccCHHHe
Confidence 367998877765 36677779999 543333333333 3379999988865543
No 128
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=46.03 E-value=13 Score=27.85 Aligned_cols=41 Identities=24% Similarity=0.531 Sum_probs=30.2
Q ss_pred CCcccccCCccccCCCeEEccccCccchhhHHHHHhcCCCCCccCccCCCC
Q 017269 185 ESHCAVCKEPFQLNSEAREMPCKHIYHGECILPWLSMRNSCPLCRRELPNE 235 (374)
Q Consensus 185 ~~~C~ICle~f~~~~~~~~lpC~H~FH~~CI~~WL~~~~sCPvCR~~l~~~ 235 (374)
...|+.|.+.+...+.+. .-+..||..|+ .|-.|...|...
T Consensus 15 ~~~C~~C~~~I~~~e~v~--a~~~~wH~~CF--------~C~~C~~~L~~~ 55 (82)
T 2co8_A 15 GDLCALCGEHLYVLERLC--VNGHFFHRSCF--------RCHTCEATLWPG 55 (82)
T ss_dssp SCBCSSSCCBCCTTTBCC--BTTBCCBTTTC--------BCSSSCCBCCTT
T ss_pred CCCCcccCCCcccceEEE--ECCCeeCCCcC--------EEcCCCCCcCCC
Confidence 467999999876554443 34789999985 588998887654
No 129
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=45.98 E-value=6.2 Score=29.41 Aligned_cols=44 Identities=27% Similarity=0.487 Sum_probs=28.1
Q ss_pred CCcccccCCccccCCCeEEcc-ccCccchhhHHHHHh---cCCCCCccCc
Q 017269 185 ESHCAVCKEPFQLNSEAREMP-CKHIYHGECILPWLS---MRNSCPLCRR 230 (374)
Q Consensus 185 ~~~C~ICle~f~~~~~~~~lp-C~H~FH~~CI~~WL~---~~~sCPvCR~ 230 (374)
...| ||..... +...+..- |...||..|+.--.. ..-.||.|+.
T Consensus 19 ~~~C-iC~~~~~-~~~MIqCd~C~~WfH~~Cvgi~~~~~~~~~~C~~C~~ 66 (68)
T 3o70_A 19 LVTC-FCMKPFA-GRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQKCRD 66 (68)
T ss_dssp CCCS-TTCCCCT-TCCEEECTTTCCEEETTTTTCCTTSCCSSCCCHHHHT
T ss_pred ceEe-ECCCcCC-CCCEEECCCCCccccccccCcCcccCCCcEECCCCCC
Confidence 3568 9987654 33343433 999999999864321 2347888854
No 130
>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X
Probab=45.04 E-value=17 Score=25.50 Aligned_cols=37 Identities=19% Similarity=0.416 Sum_probs=25.8
Q ss_pred CceeecccCcceeeccC-CCCCccCCCCCCCceEEecc
Q 017269 6 LSYWCYRCNRIIRIQSR-TEDAIVCPDCHTGFIEQIET 42 (374)
Q Consensus 6 ~~YWCh~C~r~V~~~~~-~~~~~~CP~C~~gFvEEi~~ 42 (374)
+.|-|-.|-+.+...-. ---++.||+|+=..+..+..
T Consensus 2 ~iY~C~rCg~~fs~~el~~lP~IrCpyCGyrii~KvR~ 39 (48)
T 4ayb_P 2 AVYRCGKCWKTFTDEQLKVLPGVRCPYCGYKIIFMVRK 39 (48)
T ss_dssp ---CCCCTTTTCCCCCSCCCSSSCCTTTCCSCEECCCC
T ss_pred cEEEeeccCCCccHHHHhhCCCcccCccCcEEEEEecC
Confidence 45899999999876422 12368999999888887654
No 131
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=44.74 E-value=10 Score=30.80 Aligned_cols=44 Identities=23% Similarity=0.406 Sum_probs=27.4
Q ss_pred CcccccCCccc----cC--CCeEEc-cccCccchhhHHHHH-------hcCCCCCccC
Q 017269 186 SHCAVCKEPFQ----LN--SEAREM-PCKHIYHGECILPWL-------SMRNSCPLCR 229 (374)
Q Consensus 186 ~~C~ICle~f~----~~--~~~~~l-pC~H~FH~~CI~~WL-------~~~~sCPvCR 229 (374)
..|.||+..-. .+ ++.+.- .|...||..||..++ +..-.||.|+
T Consensus 2 ~~C~~C~~~~~~n~k~g~~~~Li~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~ 59 (114)
T 2kwj_A 2 SYCDFCLGGSNMNKKSGRPEELVSCADCGRSGHPTCLQFTLNMTEAVKTYKWQCIECK 59 (114)
T ss_dssp CCCSSSCCBTTBCTTTCCCCCCEECSSSCCEECTTTTTCCHHHHHHHHHTTCCCGGGC
T ss_pred CcCccCCCCccccccCCCCCCCeEeCCCCCccchhhCCChhhhhhccCCCccCccccC
Confidence 46999987541 11 233332 399999999998653 1234677774
No 132
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=43.76 E-value=20 Score=32.16 Aligned_cols=35 Identities=17% Similarity=0.580 Sum_probs=25.8
Q ss_pred CCCcccccCCccccCCCeEEcc-ccCccchhhHHHH
Q 017269 184 KESHCAVCKEPFQLNSEAREMP-CKHIYHGECILPW 218 (374)
Q Consensus 184 ~~~~C~ICle~f~~~~~~~~lp-C~H~FH~~CI~~W 218 (374)
.+..|.+|...|..-..-.... |+++||..|....
T Consensus 160 ~~~~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs~~~ 195 (220)
T 1dvp_A 160 DGRVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTAKQ 195 (220)
T ss_dssp CCSBCTTTCCBCCSSSCCEECTTTCCEECSTTSCEE
T ss_pred CCCccCCCCCccCCcccccccCCcCCEEChHHhCCe
Confidence 3578999999997654333444 9999999996543
No 133
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=41.84 E-value=14 Score=31.23 Aligned_cols=33 Identities=24% Similarity=0.476 Sum_probs=23.7
Q ss_pred CCCcccccCCccc-cCCCeEEc-cccCccchhhHH
Q 017269 184 KESHCAVCKEPFQ-LNSEAREM-PCKHIYHGECIL 216 (374)
Q Consensus 184 ~~~~C~ICle~f~-~~~~~~~l-pC~H~FH~~CI~ 216 (374)
.+..|.+|...|. ....-... .|+|.+|..|-.
T Consensus 54 ~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~ 88 (134)
T 1zbd_B 54 GVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGV 88 (134)
T ss_dssp SSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEE
T ss_pred CCccccccCCCcccccCCCCCCCCCCcccccccCC
Confidence 4588999999983 33333343 399999998854
No 134
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=41.56 E-value=7.6 Score=35.87 Aligned_cols=44 Identities=27% Similarity=0.548 Sum_probs=25.9
Q ss_pred CcccccCCccccCCCeEEcc-ccCccchhhHHHHHh----c-CCCCCccCc
Q 017269 186 SHCAVCKEPFQLNSEAREMP-CKHIYHGECILPWLS----M-RNSCPLCRR 230 (374)
Q Consensus 186 ~~C~ICle~f~~~~~~~~lp-C~H~FH~~CI~~WL~----~-~~sCPvCR~ 230 (374)
..|.||...-. +......- |...||..|+.+=|. . .-.||.|..
T Consensus 175 c~C~vC~~~~~-~~~lL~CD~C~~~yH~~CL~PPL~~vP~G~~W~Cp~C~~ 224 (226)
T 3ask_A 175 CACHLCGGRQD-PDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 224 (226)
T ss_dssp TSCSSSCCCCC---CCEECSSSCCEECSCC--CCCCSCCSSSCCCCGGGC-
T ss_pred CCCcCCCCCCC-CCCeEEcCCCCcceeCccCCCCcccCCCCCCCCCcCCcC
Confidence 36888865321 22333333 999999999997663 2 336999965
No 135
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=40.90 E-value=24 Score=26.68 Aligned_cols=41 Identities=20% Similarity=0.395 Sum_probs=29.7
Q ss_pred CCCcccccCCccccCCCeEEccccCccchhhHHHHHhcCCCCCccCccCCCC
Q 017269 184 KESHCAVCKEPFQLNSEAREMPCKHIYHGECILPWLSMRNSCPLCRRELPNE 235 (374)
Q Consensus 184 ~~~~C~ICle~f~~~~~~~~lpC~H~FH~~CI~~WL~~~~sCPvCR~~l~~~ 235 (374)
....|..|.+.+.. .. +..-+..||.+|+ .|-.|...|...
T Consensus 24 ~~~~C~~C~~~I~~-~~--~~a~~~~~H~~CF--------~C~~C~~~L~~~ 64 (89)
T 1x64_A 24 RMPLCDKCGSGIVG-AV--VKARDKYRHPECF--------VCADCNLNLKQK 64 (89)
T ss_dssp SCCBCTTTCCBCCS-CC--EESSSCEECTTTC--------CCSSSCCCTTTS
T ss_pred cCCCcccCCCEecc-cE--EEECCceECccCC--------EecCCCCCCCCC
Confidence 34679999998763 22 3336789999885 599998887643
No 136
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=40.82 E-value=23 Score=26.18 Aligned_cols=41 Identities=15% Similarity=0.490 Sum_probs=29.9
Q ss_pred CcccccCCccccCCCeEEccccCccchhhHHHHHhcCCCCCccCccCCCC
Q 017269 186 SHCAVCKEPFQLNSEAREMPCKHIYHGECILPWLSMRNSCPLCRRELPNE 235 (374)
Q Consensus 186 ~~C~ICle~f~~~~~~~~lpC~H~FH~~CI~~WL~~~~sCPvCR~~l~~~ 235 (374)
..|+.|.+.+..++.++ ..=+..||..|. .|-.|...|...
T Consensus 16 ~~C~~C~~~I~~~~~~~-~a~~~~~H~~CF--------~C~~C~~~L~~~ 56 (82)
T 1x63_A 16 PKCKGCFKAIVAGDQNV-EYKGTVWHKDCF--------TCSNCKQVIGTG 56 (82)
T ss_dssp CBCSSSCCBCCSSSCEE-ECSSCEEETTTC--------CCSSSCCCCTTS
T ss_pred CcCccCCcccccCceEE-EECccccccccC--------chhhCCCccCCC
Confidence 57999999887655432 234788999885 588998877544
No 137
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=40.74 E-value=9.9 Score=28.29 Aligned_cols=40 Identities=23% Similarity=0.561 Sum_probs=29.6
Q ss_pred CcccccCCccccCCCeEEccccCccchhhHHHHHhcCCCCCccCccCCCC
Q 017269 186 SHCAVCKEPFQLNSEAREMPCKHIYHGECILPWLSMRNSCPLCRRELPNE 235 (374)
Q Consensus 186 ~~C~ICle~f~~~~~~~~lpC~H~FH~~CI~~WL~~~~sCPvCR~~l~~~ 235 (374)
..|+.|.+.+..++.+ ..-+..||.+|. .|-.|...|...
T Consensus 8 ~~C~~C~~~I~~~~~~--~a~~~~~H~~CF--------~C~~C~~~L~~~ 47 (81)
T 1a7i_A 8 NKCGACGRTVYHAEEV--QCDGRSFHRCCF--------LCMVCRKNLDST 47 (81)
T ss_dssp CBCSSSCCBCSSTTEE--EETTEEEESSSE--------ECSSSCCEECSS
T ss_pred CcCcCcCccccCceeE--EeCCcccccccC--------ccCCCCCCCCCC
Confidence 6799999988655543 335789999885 488998887554
No 138
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=38.87 E-value=2.7 Score=34.40 Aligned_cols=47 Identities=26% Similarity=0.494 Sum_probs=30.0
Q ss_pred CcccccCCccccCCCeEEcc-ccCccchhhHHHHHhc----CCCCCccCccCC
Q 017269 186 SHCAVCKEPFQLNSEAREMP-CKHIYHGECILPWLSM----RNSCPLCRRELP 233 (374)
Q Consensus 186 ~~C~ICle~f~~~~~~~~lp-C~H~FH~~CI~~WL~~----~~sCPvCR~~l~ 233 (374)
..|.||...-. +..+..-. |...||..|+.+=|.. .-.||.|...+.
T Consensus 59 ~~C~~C~~~~~-~~~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~~~~ 110 (114)
T 2kwj_A 59 KSCILCGTSEN-DDQLLFCDDCDRGYHMYCLNPPVAEPPEGSWSCHLCWELLK 110 (114)
T ss_dssp CCCTTTTCCTT-TTTEEECSSSCCEEETTTSSSCCSSCCSSCCCCHHHHHHHH
T ss_pred CccCcccccCC-CCceEEcCCCCccccccccCCCccCCCCCCeECccccchhh
Confidence 35888876432 22333333 9999999999875532 236988866543
No 139
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=38.76 E-value=15 Score=29.63 Aligned_cols=20 Identities=40% Similarity=1.197 Sum_probs=9.9
Q ss_pred eecccCcceeeccCCCCCccCCCCCC
Q 017269 9 WCYRCNRIIRIQSRTEDAIVCPDCHT 34 (374)
Q Consensus 9 WCh~C~r~V~~~~~~~~~~~CP~C~~ 34 (374)
.|-.|+..+... +.||.|+.
T Consensus 50 hC~~C~~~f~~~------a~CPdC~q 69 (101)
T 2jne_A 50 RCRSCGEFIEMK------ALCPDCHQ 69 (101)
T ss_dssp EETTTCCEEEEE------EECTTTCS
T ss_pred ECccccchhhcc------ccCcchhh
Confidence 355555554443 45555554
No 140
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=38.06 E-value=4.7 Score=33.65 Aligned_cols=46 Identities=22% Similarity=0.460 Sum_probs=31.3
Q ss_pred CcccccCCccccCCCeEE-ccccCccchhhHHHHHhcCCCCCccCcc
Q 017269 186 SHCAVCKEPFQLNSEARE-MPCKHIYHGECILPWLSMRNSCPLCRRE 231 (374)
Q Consensus 186 ~~C~ICle~f~~~~~~~~-lpC~H~FH~~CI~~WL~~~~sCPvCR~~ 231 (374)
..|.+|...|..-..-.. -.|+.+||..|....+....+|-.|...
T Consensus 20 ~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~~~~vRVC~~C~~~ 66 (120)
T 1y02_A 20 PSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVGNGPRLCLLCQRF 66 (120)
T ss_dssp CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC----CCEEHHHHHH
T ss_pred CcccCcCCccccccccccCCCCCCeeCHHHhCCCCCCceECHHHHHH
Confidence 579999999875433233 3499999999987766666678888554
No 141
>2b9d_A E7 protein; zinc finger, homodimer, transcription, viral protein; 1.60A {Human papillomavirus type 1A} SCOP: g.91.1.1
Probab=37.64 E-value=10 Score=27.08 Aligned_cols=26 Identities=31% Similarity=0.780 Sum_probs=19.5
Q ss_pred eecccCcceeeccCCC--------------CCccCCCCCC
Q 017269 9 WCYRCNRIIRIQSRTE--------------DAIVCPDCHT 34 (374)
Q Consensus 9 WCh~C~r~V~~~~~~~--------------~~~~CP~C~~ 34 (374)
.|+.|.+.|++.+..+ -.++||.|-.
T Consensus 10 ~C~~C~~~lrl~V~at~~~IR~lqqLLl~~L~lvCp~Ca~ 49 (52)
T 2b9d_A 10 SCAYCEKLVRLTVLADHSAIRQLEEMLLRSLNIVCPLCTL 49 (52)
T ss_dssp ECTTTCCEEEEEEEECHHHHHHHHHHHHHTCCCCCTTTTT
T ss_pred ECCCCCCeEEEEEEeCchhHHHHHHHhhCCceEECcchhc
Confidence 5999999999865322 3689999964
No 142
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=37.13 E-value=16 Score=25.17 Aligned_cols=35 Identities=23% Similarity=0.388 Sum_probs=23.7
Q ss_pred CceeecccCc-ceeeccCCCCCccCCCCCCCceEEec
Q 017269 6 LSYWCYRCNR-IIRIQSRTEDAIVCPDCHTGFIEQIE 41 (374)
Q Consensus 6 ~~YWCh~C~r-~V~~~~~~~~~~~CP~C~~gFvEEi~ 41 (374)
..+-|-.|.. .+.... ...+++|+.|+--|-|++-
T Consensus 4 ~~~~CP~C~~~~l~~d~-~~gelvC~~CG~v~~e~~i 39 (50)
T 1pft_A 4 KQKVCPACESAELIYDP-ERGEIVCAKCGYVIEENII 39 (50)
T ss_dssp SCCSCTTTSCCCEEEET-TTTEEEESSSCCBCCCCCC
T ss_pred ccEeCcCCCCcceEEcC-CCCeEECcccCCccccccc
Confidence 4677999977 444432 4567999999877665443
No 143
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=36.83 E-value=27 Score=25.00 Aligned_cols=41 Identities=20% Similarity=0.473 Sum_probs=28.7
Q ss_pred CcccccCCccccCCCeEEccccCccchhhHHHHHhcCCCCCccCccCCCC
Q 017269 186 SHCAVCKEPFQLNSEAREMPCKHIYHGECILPWLSMRNSCPLCRRELPNE 235 (374)
Q Consensus 186 ~~C~ICle~f~~~~~~~~lpC~H~FH~~CI~~WL~~~~sCPvCR~~l~~~ 235 (374)
..|+.|.+.+...+.+. ..-+..||.+|. .|-.|...|...
T Consensus 6 ~~C~~C~~~I~~~~~~~-~a~~~~~H~~CF--------~C~~C~~~L~~~ 46 (72)
T 1x4k_A 6 SGCQECKKTIMPGTRKM-EYKGSSWHETCF--------ICHRCQQPIGTK 46 (72)
T ss_dssp CCBSSSCCCCCSSSCEE-EETTEEEETTTT--------CCSSSCCCCCSS
T ss_pred CCCccCCCcccCCceEE-EECcCeecccCC--------cccccCCccCCC
Confidence 57999999887544332 224778998885 588998877543
No 144
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=36.53 E-value=23 Score=25.33 Aligned_cols=39 Identities=28% Similarity=0.629 Sum_probs=27.8
Q ss_pred CcccccCCccccCCCeEEccccCccchhhHHHHHhcCCCCCccCccCCCC
Q 017269 186 SHCAVCKEPFQLNSEAREMPCKHIYHGECILPWLSMRNSCPLCRRELPNE 235 (374)
Q Consensus 186 ~~C~ICle~f~~~~~~~~lpC~H~FH~~CI~~WL~~~~sCPvCR~~l~~~ 235 (374)
..|..|.+.+. +..+. .-+..||.+|+ .|-.|...|...
T Consensus 6 ~~C~~C~~~I~-~~~~~--a~~~~~H~~CF--------~C~~C~~~L~~~ 44 (70)
T 2d8x_A 6 SGCHQCGEFII-GRVIK--AMNNSWHPECF--------RCDLCQEVLADI 44 (70)
T ss_dssp SBCSSSCCBCC-SCCEE--ETTEEECTTTS--------BCSSSCCBCSSS
T ss_pred CcCccCCCEec-ceEEE--ECcccccccCC--------EeCCCCCcCCCC
Confidence 57999988876 33333 34778998885 588898877654
No 145
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=36.33 E-value=6 Score=31.83 Aligned_cols=43 Identities=28% Similarity=0.566 Sum_probs=27.7
Q ss_pred cccccCCccccCCCeEEcc-ccCccchhhHHHHHhc----CCCCCccCc
Q 017269 187 HCAVCKEPFQLNSEAREMP-CKHIYHGECILPWLSM----RNSCPLCRR 230 (374)
Q Consensus 187 ~C~ICle~f~~~~~~~~lp-C~H~FH~~CI~~WL~~----~~sCPvCR~ 230 (374)
.|.||.+.-. .+.+.... |...||..|+.+=|.. .-.||.|..
T Consensus 56 ~C~~C~~~~~-~~~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~ 103 (111)
T 2ysm_A 56 VCQNCKQSGE-DSKMLVCDTCDKGYHTFCLQPVMKSVPTNGWKCKNCRI 103 (111)
T ss_dssp CCTTTCCCSC-CTTEEECSSSCCEEEGGGSSSCCSSCCSSCCCCHHHHC
T ss_pred cccccCccCC-CCCeeECCCCCcHHhHHhcCCccccCCCCCcCCcCCcC
Confidence 5778866422 12333333 8999999999875542 336888854
No 146
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=36.28 E-value=23 Score=25.85 Aligned_cols=40 Identities=25% Similarity=0.522 Sum_probs=28.2
Q ss_pred CcccccCCcccc-CCCeEEccccCccchhhHHHHHhcCCCCCccCccCC
Q 017269 186 SHCAVCKEPFQL-NSEAREMPCKHIYHGECILPWLSMRNSCPLCRRELP 233 (374)
Q Consensus 186 ~~C~ICle~f~~-~~~~~~lpC~H~FH~~CI~~WL~~~~sCPvCR~~l~ 233 (374)
..|+.|.+.+.. ++...+..-+..||.+|. .|-.|...|.
T Consensus 6 ~~C~~C~~~I~~~g~~~~~~a~~~~wH~~CF--------~C~~C~~~L~ 46 (76)
T 1x68_A 6 SGCVACSKPISGLTGAKFICFQDSQWHSECF--------NCGKCSVSLV 46 (76)
T ss_dssp CCCTTTCCCCCTTTTCCEEEETTEEEEGGGC--------BCTTTCCBCS
T ss_pred CCCccCCCcccCCCCceeEEECCcccCcccC--------ChhhCCCcCC
Confidence 569999988764 122233345788999885 5889988875
No 147
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=36.06 E-value=21 Score=25.74 Aligned_cols=40 Identities=25% Similarity=0.546 Sum_probs=28.8
Q ss_pred CcccccCCcccc--CCCeEEccccCccchhhHHHHHhcCCCCCccCccCCC
Q 017269 186 SHCAVCKEPFQL--NSEAREMPCKHIYHGECILPWLSMRNSCPLCRRELPN 234 (374)
Q Consensus 186 ~~C~ICle~f~~--~~~~~~lpC~H~FH~~CI~~WL~~~~sCPvCR~~l~~ 234 (374)
..|+.|.+.+.. .+.+ +..-+..||.+|+ .|-.|...|..
T Consensus 6 ~~C~~C~~~I~~~~~~~~-~~a~~~~wH~~CF--------~C~~C~~~L~~ 47 (72)
T 1x4l_A 6 SGCAGCTNPISGLGGTKY-ISFEERQWHNDCF--------NCKKCSLSLVG 47 (72)
T ss_dssp CSBTTTTBCCCCSSSCSC-EECSSCEECTTTC--------BCSSSCCBCTT
T ss_pred CCCcCCCccccCCCCcce-EEECCcccCcccC--------EeccCCCcCCC
Confidence 579999998774 2233 2335889999885 68899888753
No 148
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=35.63 E-value=27 Score=24.95 Aligned_cols=41 Identities=24% Similarity=0.495 Sum_probs=29.1
Q ss_pred CcccccCCccccCCCeEEccccCccchhhHHHHHhcCCCCCccCccCCCC
Q 017269 186 SHCAVCKEPFQLNSEAREMPCKHIYHGECILPWLSMRNSCPLCRRELPNE 235 (374)
Q Consensus 186 ~~C~ICle~f~~~~~~~~lpC~H~FH~~CI~~WL~~~~sCPvCR~~l~~~ 235 (374)
..|..|.+.+...+.+ +..-+..||..|. .|-.|...|...
T Consensus 6 ~~C~~C~~~I~~~~~~-~~a~~~~~H~~CF--------~C~~C~~~L~~~ 46 (72)
T 1wyh_A 6 SGCSACGETVMPGSRK-LEYGGQTWHEHCF--------LCSGCEQPLGSR 46 (72)
T ss_dssp CBCSSSCCBCCSSSCE-ECSTTCCEETTTC--------BCTTTCCBTTTS
T ss_pred CCCccCCCccccCccE-EEECccccCcccC--------eECCCCCcCCCC
Confidence 5799999887754333 3335789999885 588898877543
No 149
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=35.21 E-value=11 Score=28.61 Aligned_cols=45 Identities=20% Similarity=0.476 Sum_probs=28.2
Q ss_pred CCcccccCCccccCCCeEEc---cccCccchhhHHHHHh---------cCCCCCccCcc
Q 017269 185 ESHCAVCKEPFQLNSEAREM---PCKHIYHGECILPWLS---------MRNSCPLCRRE 231 (374)
Q Consensus 185 ~~~C~ICle~f~~~~~~~~l---pC~H~FH~~CI~~WL~---------~~~sCPvCR~~ 231 (374)
...| ||......+ ..+.. -|...||..|+.---. .+-.||.|+..
T Consensus 16 ~~~C-iC~~~~~~g-~MI~CD~~~C~~W~H~~CVgi~~~~~~~~~~~~~~~~C~~C~~~ 72 (78)
T 1wew_A 16 KVRC-VCGNSLETD-SMIQCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEICRLT 72 (78)
T ss_dssp CCCC-SSCCCCCCS-CEEECSSTTTCCEEEHHHHSCCCTTTCSCSCSCSSCCCHHHHHC
T ss_pred CEEe-ECCCcCCCC-CEEEECCccCCccccCEEEccccccccccccCCCCEECCCCCcc
Confidence 3567 898764333 23332 4999999999853221 24479999764
No 150
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=34.88 E-value=28 Score=24.93 Aligned_cols=39 Identities=26% Similarity=0.618 Sum_probs=26.8
Q ss_pred CcccccCCccccCCCeEEccccCccchhhHHHHHhcCCCCCccCccCC
Q 017269 186 SHCAVCKEPFQLNSEAREMPCKHIYHGECILPWLSMRNSCPLCRRELP 233 (374)
Q Consensus 186 ~~C~ICle~f~~~~~~~~lpC~H~FH~~CI~~WL~~~~sCPvCR~~l~ 233 (374)
..|..|.+.+...+.. +..=+..||.+|+ .|-.|...|.
T Consensus 6 ~~C~~C~~~I~~~~~~-~~a~~~~~H~~CF--------~C~~C~~~L~ 44 (72)
T 1x61_A 6 SGCGGCGEDVVGDGAG-VVALDRVFHVGCF--------VCSTCRAQLR 44 (72)
T ss_dssp CCCSSSCSCCCSSSCC-EECSSSEECTTTC--------BCSSSCCBCT
T ss_pred CCCccCCCccCCCceE-EEECCCeEcccCC--------cccccCCcCC
Confidence 5699998877643322 2234788998884 5888988874
No 151
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=34.85 E-value=24 Score=26.25 Aligned_cols=32 Identities=19% Similarity=0.499 Sum_probs=23.4
Q ss_pred CcccccCCccccCCCeEEc-cccCccchhhHHH
Q 017269 186 SHCAVCKEPFQLNSEAREM-PCKHIYHGECILP 217 (374)
Q Consensus 186 ~~C~ICle~f~~~~~~~~l-pC~H~FH~~CI~~ 217 (374)
..|.+|...|..-..-... .|+.+|+..|...
T Consensus 12 ~~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~~ 44 (73)
T 1vfy_A 12 DACMICSKKFSLLNRKHHCRSCGGVFCQEHSSN 44 (73)
T ss_dssp SBCTTTCCBCBTTBCCEECTTTCCEECGGGSCE
T ss_pred CcccCCCCccCCccccccCCCCCEEEcccccCC
Confidence 5799999998754333333 3999999999653
No 152
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=34.83 E-value=51 Score=29.75 Aligned_cols=49 Identities=20% Similarity=0.584 Sum_probs=32.5
Q ss_pred CCCcccccCCccccCCCeEEcc-ccCccchhhHHHHHh--------cCCCCCccCccC
Q 017269 184 KESHCAVCKEPFQLNSEAREMP-CKHIYHGECILPWLS--------MRNSCPLCRREL 232 (374)
Q Consensus 184 ~~~~C~ICle~f~~~~~~~~lp-C~H~FH~~CI~~WL~--------~~~sCPvCR~~l 232 (374)
.+..|.+|...|..-..-.... |+++||..|-..++. ....|-.|-..|
T Consensus 163 ~~~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~~~~~~p~~~~~~~~RVC~~C~~~l 220 (226)
T 3zyq_A 163 DAEECHRCRVQFGVMTRKHHCRACGQIFCGKCSSKYSTIPKFGIEKEVRVCEPCYEQL 220 (226)
T ss_dssp CCSBCTTTCCBCBTTBCCEECTTTCCEECTTTCCEEEEEGGGTEEEEEEECHHHHHHH
T ss_pred cCCCCcCcCCCCCccccccccCCCcCEeChhhcCCcccCCCCCCCCCCEeCHHHHHHh
Confidence 3578999999997654333444 999999999765431 122566665444
No 153
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=34.03 E-value=28 Score=26.67 Aligned_cols=48 Identities=19% Similarity=0.416 Sum_probs=31.7
Q ss_pred CCcccccCCccccCCCeEEcc-ccCccchhhHHHHHh--------cCCCCCccCccC
Q 017269 185 ESHCAVCKEPFQLNSEAREMP-CKHIYHGECILPWLS--------MRNSCPLCRREL 232 (374)
Q Consensus 185 ~~~C~ICle~f~~~~~~~~lp-C~H~FH~~CI~~WL~--------~~~sCPvCR~~l 232 (374)
...|.+|...|..-..-...- |+++|+..|....+. ....|-.|-..|
T Consensus 21 ~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~~~lp~~~~~~~~RVC~~C~~~l 77 (84)
T 1z2q_A 21 APACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRHRAAIPMRGITEPERVCDACYLAL 77 (84)
T ss_dssp CCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCCEEEETTTTEEEEEECCHHHHHHH
T ss_pred CCCCcCcCCccccchhcccccCCCcEEChHHhCCeEeccCCCCCCCCEECHHHHHHH
Confidence 367999999997654333333 999999999765431 122566665444
No 154
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=33.96 E-value=24 Score=27.47 Aligned_cols=49 Identities=16% Similarity=0.516 Sum_probs=33.4
Q ss_pred CcccccCCccccCCCeEEcc-ccCccchhhHHHHHh------cCCCCCccCccCCC
Q 017269 186 SHCAVCKEPFQLNSEAREMP-CKHIYHGECILPWLS------MRNSCPLCRRELPN 234 (374)
Q Consensus 186 ~~C~ICle~f~~~~~~~~lp-C~H~FH~~CI~~WL~------~~~sCPvCR~~l~~ 234 (374)
..|.+|...|..-..-.... |+++|+..|...++. ...+|-.|-..|..
T Consensus 21 ~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~~~~l~~~~~~~RVC~~C~~~l~~ 76 (90)
T 3t7l_A 21 PNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNRKCKLQYLEKEARVCVVCYETISK 76 (90)
T ss_dssp CBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEEEEETTTTEEEEECHHHHHHHHH
T ss_pred CcCcCCCCcccchhhCccccCCCCEECCcccCCeeecCCCCCCCeECHHHHHHHHH
Confidence 67999999997654333333 999999999876542 22357777655533
No 155
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=33.93 E-value=23 Score=29.36 Aligned_cols=33 Identities=21% Similarity=0.582 Sum_probs=24.2
Q ss_pred CcccccCCccccCCCeEEcc-ccCccchhhHHHH
Q 017269 186 SHCAVCKEPFQLNSEAREMP-CKHIYHGECILPW 218 (374)
Q Consensus 186 ~~C~ICle~f~~~~~~~~lp-C~H~FH~~CI~~W 218 (374)
..|.+|...|..-..-...- |+++||..|....
T Consensus 70 ~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~~~ 103 (125)
T 1joc_A 70 QNCMACGKGFSVTVRRHHCRQCGNIFCAECSAKN 103 (125)
T ss_dssp CBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEE
T ss_pred CCCcCcCCccccccccccCCCCCeEEChHHhCCc
Confidence 57999999997654333333 9999999996543
No 156
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=33.89 E-value=26 Score=26.57 Aligned_cols=41 Identities=17% Similarity=0.566 Sum_probs=30.3
Q ss_pred CCcccccCCccccCCCeEEccccCccchhhHHHHHhcCCCCCccCccCCCC
Q 017269 185 ESHCAVCKEPFQLNSEAREMPCKHIYHGECILPWLSMRNSCPLCRRELPNE 235 (374)
Q Consensus 185 ~~~C~ICle~f~~~~~~~~lpC~H~FH~~CI~~WL~~~~sCPvCR~~l~~~ 235 (374)
...|+.|.+.+...+.+ ..-+..||.+|. .|-.|...|...
T Consensus 15 ~~~C~~C~~~I~~~~~v--~a~~~~~H~~CF--------~C~~C~~~L~~~ 55 (91)
T 2d8y_A 15 RETCVECQKTVYPMERL--LANQQVFHISCF--------RCSYCNNKLSLG 55 (91)
T ss_dssp SCBCTTTCCBCCTTSEE--ECSSSEEETTTC--------BCTTTCCBCCTT
T ss_pred CCcCccCCCccCCceeE--EECCCEECCCCC--------eeCCCCCCCCCC
Confidence 46799999988654433 446789999885 588898877654
No 157
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=33.85 E-value=30 Score=25.54 Aligned_cols=39 Identities=23% Similarity=0.689 Sum_probs=27.8
Q ss_pred CcccccCCccccCCCeEEccccCccchhhHHHHHhcCCCCCccCccCCCC
Q 017269 186 SHCAVCKEPFQLNSEAREMPCKHIYHGECILPWLSMRNSCPLCRRELPNE 235 (374)
Q Consensus 186 ~~C~ICle~f~~~~~~~~lpC~H~FH~~CI~~WL~~~~sCPvCR~~l~~~ 235 (374)
..|+.|.+.+. +..+. .-+..||.+|. .|-.|...|...
T Consensus 16 ~~C~~C~~~I~-~~~v~--a~~~~wH~~CF--------~C~~C~~~L~~~ 54 (81)
T 1v6g_A 16 TRCFSCDQFIE-GEVVS--ALGKTYHPDCF--------VCAVCRLPFPPG 54 (81)
T ss_dssp CBCTTTCCBCC-SCCEE--ETTEEECTTTS--------SCSSSCCCCCSS
T ss_pred CcCccccCEec-cceEE--ECCceeCccCC--------ccccCCCCCCCC
Confidence 47999998876 33333 35788998885 588898877543
No 158
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=33.19 E-value=7.5 Score=28.17 Aligned_cols=40 Identities=25% Similarity=0.632 Sum_probs=23.8
Q ss_pred CcccccCCccccCCCeEEcc---cc-CccchhhHHHHHhc----CCCCCccCc
Q 017269 186 SHCAVCKEPFQLNSEAREMP---CK-HIYHGECILPWLSM----RNSCPLCRR 230 (374)
Q Consensus 186 ~~C~ICle~f~~~~~~~~lp---C~-H~FH~~CI~~WL~~----~~sCPvCR~ 230 (374)
..| ||..... + ..+..- |. ..||..|+. |.. .-.||.|+.
T Consensus 11 ~~C-~C~~~~~-g-~mi~CD~cdC~~~wfH~~Cvg--l~~~p~g~w~C~~C~~ 58 (60)
T 2vnf_A 11 TYC-LCHQVSY-G-EMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQ 58 (60)
T ss_dssp EET-TTTEECC-S-EEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CEE-ECCCcCC-C-CEEEeCCCCCCCceEehhcCC--CCcCCCCCEECcCccC
Confidence 456 8977532 2 222211 44 579999997 532 337998854
No 159
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=33.05 E-value=20 Score=27.86 Aligned_cols=24 Identities=29% Similarity=0.844 Sum_probs=13.8
Q ss_pred ceeecccCcceeeccCCCCCccCCCCCCCc
Q 017269 7 SYWCYRCNRIIRIQSRTEDAIVCPDCHTGF 36 (374)
Q Consensus 7 ~YWCh~C~r~V~~~~~~~~~~~CP~C~~gF 36 (374)
.|.|-.|+..+... .+||.|+...
T Consensus 18 ~~~C~~C~~~~~~~------afCPeCgq~L 41 (81)
T 2jrp_A 18 TAHCETCAKDFSLQ------ALCPDCRQPL 41 (81)
T ss_dssp EEECTTTCCEEEEE------EECSSSCSCC
T ss_pred ceECccccccCCCc------ccCcchhhHH
Confidence 44466666665543 3666666543
No 160
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=33.03 E-value=16 Score=26.79 Aligned_cols=42 Identities=19% Similarity=0.493 Sum_probs=28.4
Q ss_pred CcccccCCccccCCCeEEcc-ccCccchhhHHHHHhcCCCCCcc
Q 017269 186 SHCAVCKEPFQLNSEAREMP-CKHIYHGECILPWLSMRNSCPLC 228 (374)
Q Consensus 186 ~~C~ICle~f~~~~~~~~lp-C~H~FH~~CI~~WL~~~~sCPvC 228 (374)
..|-.|+..|... ....-+ |++.|+.+|=.---+.-..||-|
T Consensus 16 ~~C~~C~~~~~~~-~~y~C~~C~~~FC~dCD~fiHe~Lh~CPgC 58 (59)
T 1z60_A 16 RFCYGCQGELKDQ-HVYVCAVCQNVFCVDCDVFVHDSLHSCPGC 58 (59)
T ss_dssp CEETTTTEECTTS-EEECCTTTTCCBCHHHHHTTTTTSCSSSTT
T ss_pred CcccccCcccCCC-ccEECCccCcCcccchhHHHHhhccCCcCC
Confidence 4699999888522 223445 99999999944322344579988
No 161
>1ryq_A DNA-directed RNA polymerase, subunit E''; structural genomics, zinc, PSI, protein structure initiative; 1.38A {Pyrococcus furiosus} SCOP: g.41.9.3 PDB: 3qqc_E
Probab=32.16 E-value=21 Score=27.02 Aligned_cols=21 Identities=29% Similarity=0.642 Sum_probs=15.3
Q ss_pred eeecccCcceeeccCCCCCccCCCCCCC
Q 017269 8 YWCYRCNRIIRIQSRTEDAIVCPDCHTG 35 (374)
Q Consensus 8 YWCh~C~r~V~~~~~~~~~~~CP~C~~g 35 (374)
-=|-.|.+.| ++-.||.|++.
T Consensus 12 ~AC~~C~~~~-------~~~~CPnC~s~ 32 (69)
T 1ryq_A 12 KACRHCHYIT-------SEDRCPVCGSR 32 (69)
T ss_dssp EEETTTCBEE-------SSSSCTTTCCC
T ss_pred hhHHhCCccc-------cCCcCCCccCC
Confidence 3488999955 23589999853
No 162
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*
Probab=32.12 E-value=9.5 Score=38.95 Aligned_cols=45 Identities=31% Similarity=0.662 Sum_probs=29.3
Q ss_pred CcccccCCccccCCCeEEcc-ccCccchhhHHHHHh-----cCCCCCccCcc
Q 017269 186 SHCAVCKEPFQLNSEAREMP-CKHIYHGECILPWLS-----MRNSCPLCRRE 231 (374)
Q Consensus 186 ~~C~ICle~f~~~~~~~~lp-C~H~FH~~CI~~WL~-----~~~sCPvCR~~ 231 (374)
..| ||...+..+...+..- |.-.||..|+.---. ..-.||.|+..
T Consensus 38 ~yC-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~ 88 (488)
T 3kv5_D 38 VYC-VCRQPYDVNRFMIECDICKDWFHGSCVGVEEHHAVDIDLYHCPNCAVL 88 (488)
T ss_dssp EET-TTTEECCTTSCEEEBTTTCCEEEHHHHTCCGGGGGGEEEBCCHHHHHH
T ss_pred eEE-eCCCcCCCCCCeEEccCCCCceeeeecCcCcccccCCCEEECCCCcCC
Confidence 345 9987764344444444 999999999853222 23479999754
No 163
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=31.34 E-value=33 Score=26.64 Aligned_cols=51 Identities=22% Similarity=0.419 Sum_probs=34.7
Q ss_pred CCcccccCCccccCCCeEEcc-ccCccchhhHHHHHh-------cCCCCCccCccCCCC
Q 017269 185 ESHCAVCKEPFQLNSEAREMP-CKHIYHGECILPWLS-------MRNSCPLCRRELPNE 235 (374)
Q Consensus 185 ~~~C~ICle~f~~~~~~~~lp-C~H~FH~~CI~~WL~-------~~~sCPvCR~~l~~~ 235 (374)
...|.+|...|..-..-...- |+++|+..|....+. ...+|-.|-..|...
T Consensus 9 ~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~~~~lp~~g~~~~RVC~~C~~~l~~~ 67 (88)
T 1wfk_A 9 ESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSFSALVPRAGNTQQKVCKQCHTILTRG 67 (88)
T ss_dssp CSBCTTTCCBCCSSSCEEECSSSCCEEETTTSCEEEEETTTTSEEEEECHHHHHHHHHC
T ss_pred CCCCcCcCCcccCccccccCCCCCCEEChhHcCCceeccccCCCcCEECHHHHHHHHhc
Confidence 367999999997654333333 999999999765431 223688886666443
No 164
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=31.25 E-value=30 Score=26.37 Aligned_cols=33 Identities=24% Similarity=0.678 Sum_probs=24.5
Q ss_pred CcccccCCccccCCCeEEcc-ccCccchhhHHHH
Q 017269 186 SHCAVCKEPFQLNSEAREMP-CKHIYHGECILPW 218 (374)
Q Consensus 186 ~~C~ICle~f~~~~~~~~lp-C~H~FH~~CI~~W 218 (374)
..|.+|...|..-..-...- |+.+|+..|....
T Consensus 20 ~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~ 53 (82)
T 2yw8_A 20 THCRQCEKEFSISRRKHHCRNCGHIFCNTCSSNE 53 (82)
T ss_dssp CBCTTTCCBCBTTBCCEECTTTCCEECSGGGCEE
T ss_pred CcccCcCCcccCccccccCCCCCCEEChHHhCCe
Confidence 57999999997654333333 9999999997654
No 165
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=30.74 E-value=31 Score=25.58 Aligned_cols=40 Identities=20% Similarity=0.498 Sum_probs=28.9
Q ss_pred CCcccccCCccccCCCeEEccccCccchhhHHHHHhcCCCCCccCccCCCC
Q 017269 185 ESHCAVCKEPFQLNSEAREMPCKHIYHGECILPWLSMRNSCPLCRRELPNE 235 (374)
Q Consensus 185 ~~~C~ICle~f~~~~~~~~lpC~H~FH~~CI~~WL~~~~sCPvCR~~l~~~ 235 (374)
...|+.|.+.+. +..+ ..-+..||.+|. +|-.|...|...
T Consensus 15 ~~~C~~C~~~I~-~~~v--~a~~~~~H~~CF--------~C~~C~~~L~~~ 54 (79)
T 2cor_A 15 KYICQKCHAIID-EQPL--IFKNDPYHPDHF--------NCANCGKELTAD 54 (79)
T ss_dssp CCBCTTTCCBCC-SCCC--CCSSSCCCTTTS--------BCSSSCCBCCTT
T ss_pred CCCCccCCCEec-ceEE--EECcceeCCCCC--------EeCCCCCccCCC
Confidence 367999998876 3332 335788998884 699998887644
No 166
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=30.73 E-value=27 Score=26.47 Aligned_cols=40 Identities=18% Similarity=0.435 Sum_probs=29.0
Q ss_pred CCcccccCCccccCCCeEEccccCccchhhHHHHHhcCCCCCccCccCCCC
Q 017269 185 ESHCAVCKEPFQLNSEAREMPCKHIYHGECILPWLSMRNSCPLCRRELPNE 235 (374)
Q Consensus 185 ~~~C~ICle~f~~~~~~~~lpC~H~FH~~CI~~WL~~~~sCPvCR~~l~~~ 235 (374)
...|+.|.+.+. +.. +..-+..||.+|+ .|-.|+..|...
T Consensus 25 ~~~C~~C~~~I~-~~~--v~a~~~~~H~~CF--------~C~~C~~~L~~~ 64 (90)
T 2dar_A 25 TPMCAHCNQVIR-GPF--LVALGKSWHPEEF--------NCAHCKNTMAYI 64 (90)
T ss_dssp CCBBSSSCCBCC-SCE--EEETTEEECTTTC--------BCSSSCCBCSSS
T ss_pred CCCCccCCCEec-ceE--EEECCccccccCC--------ccCCCCCCCCCC
Confidence 367999999874 333 3345889999885 688998888643
No 167
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=30.35 E-value=11 Score=36.91 Aligned_cols=48 Identities=25% Similarity=0.424 Sum_probs=0.0
Q ss_pred CCcccccCCccccCCCeEE-ccccCccchhhHHHHHh-------cCCCCCccCccC
Q 017269 185 ESHCAVCKEPFQLNSEARE-MPCKHIYHGECILPWLS-------MRNSCPLCRREL 232 (374)
Q Consensus 185 ~~~C~ICle~f~~~~~~~~-lpC~H~FH~~CI~~WL~-------~~~sCPvCR~~l 232 (374)
...|.+|...|..-..-.. -.|+++||..|...++. ...+|-.|-..|
T Consensus 375 ~~~c~~c~~~f~~~~r~h~Cr~Cg~~~C~~Cs~~~~~~~~~~~~~~rvC~~C~~~l 430 (434)
T 3mpx_A 375 VMMCMNCGCDFSLTLRRHHCHACGKIVCRNCSRNKYPLKYLKDRMAKVCDGCFGEL 430 (434)
T ss_dssp --------------------------------------------------------
T ss_pred CCcCCCcCCCCCCcchhhhcccCcCEeehhhCCCeeeCCCCCCCcCEecHHHHHHH
Confidence 3679999998865432222 23999999999877651 123677776554
No 168
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=30.27 E-value=23 Score=29.00 Aligned_cols=39 Identities=21% Similarity=0.477 Sum_probs=28.7
Q ss_pred CCcccccCCccccCCCeEEccccCccchhhHHHHHhcCCCCCccCccCC
Q 017269 185 ESHCAVCKEPFQLNSEAREMPCKHIYHGECILPWLSMRNSCPLCRRELP 233 (374)
Q Consensus 185 ~~~C~ICle~f~~~~~~~~lpC~H~FH~~CI~~WL~~~~sCPvCR~~l~ 233 (374)
...|+.|.+.+.... ++..-+..||..|+ .|-.|+..|.
T Consensus 61 ~~~C~~C~~~I~~~~--~v~a~~~~wH~~CF--------~C~~C~~~L~ 99 (123)
T 2l4z_A 61 WKRCAGCGGKIADRF--LLYAMDSYWHSRCL--------KCSSCQAQLG 99 (123)
T ss_dssp CSBBSSSSSBCCSSS--EEEETTEEEETTTS--------BCTTTCCBGG
T ss_pred CCcCcCCCCCcCCcE--EEEeCCcEEccccc--------CcCcCCCccc
Confidence 367999998876332 23335889999885 6999998886
No 169
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*
Probab=30.06 E-value=16 Score=28.90 Aligned_cols=41 Identities=20% Similarity=0.409 Sum_probs=25.0
Q ss_pred CCcccccCCccccCCCeEEcc-cc---CccchhhHHHHHh----cCCCCCc-cCc
Q 017269 185 ESHCAVCKEPFQLNSEAREMP-CK---HIYHGECILPWLS----MRNSCPL-CRR 230 (374)
Q Consensus 185 ~~~C~ICle~f~~~~~~~~lp-C~---H~FH~~CI~~WL~----~~~sCPv-CR~ 230 (374)
...| ||..... + ..+..- |. ..||..||. |. ..-.||. |+.
T Consensus 26 ~~yC-iC~~~~~-g-~MI~CD~c~C~~eWfH~~CVg--l~~~p~~~W~Cp~cC~~ 75 (90)
T 2jmi_A 26 EVYC-FCRNVSY-G-PMVACDNPACPFEWFHYGCVG--LKQAPKGKWYCSKDCKE 75 (90)
T ss_dssp SCCS-TTTCCCS-S-SEECCCSSSCSCSCEETTTSS--CSSCTTSCCCSSHHHHH
T ss_pred CcEE-EeCCCCC-C-CEEEecCCCCccccCcCccCC--CCcCCCCCccCChhhcc
Confidence 4567 9987422 3 232222 44 689999986 32 2347999 864
No 170
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=30.00 E-value=33 Score=26.18 Aligned_cols=31 Identities=19% Similarity=0.588 Sum_probs=22.6
Q ss_pred CcccccCCccccCCCeEEc-cccCccchhhHH
Q 017269 186 SHCAVCKEPFQLNSEAREM-PCKHIYHGECIL 216 (374)
Q Consensus 186 ~~C~ICle~f~~~~~~~~l-pC~H~FH~~CI~ 216 (374)
..|.+|...|..-..-... .|+.+|+..|..
T Consensus 15 ~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~ 46 (84)
T 1x4u_A 15 GNCTGCSATFSVLKKRRSCSNCGNSFCSRCCS 46 (84)
T ss_dssp SSCSSSCCCCCSSSCCEECSSSCCEECTTTSC
T ss_pred CcCcCcCCccccchhhhhhcCCCcEEChhhcC
Confidence 6799999999754433333 399999998844
No 171
>2jvm_A Uncharacterized protein; alpha+beta, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Rhodobacter sphaeroides 2}
Probab=29.84 E-value=16 Score=28.36 Aligned_cols=19 Identities=16% Similarity=0.389 Sum_probs=15.1
Q ss_pred CCCCccCCCCCCCceEEec
Q 017269 23 TEDAIVCPDCHTGFIEQIE 41 (374)
Q Consensus 23 ~~~~~~CP~C~~gFvEEi~ 41 (374)
....+.||+|+--|+.+-.
T Consensus 50 ~~g~~~CpYCg~~f~l~~~ 68 (80)
T 2jvm_A 50 ETGFVECGYCDRRYIHESF 68 (80)
T ss_dssp TTCEEECSSSSCEEEEHHH
T ss_pred CCCeEECCCCCCEEEecCC
Confidence 3567899999999997643
No 172
>2k2d_A Ring finger and CHY zinc finger domain- containing protein 1; zinc-binding protein, cytoplasm, metal-binding, nucleus, metal binding protein; NMR {Homo sapiens}
Probab=29.64 E-value=27 Score=26.81 Aligned_cols=34 Identities=21% Similarity=0.296 Sum_probs=23.7
Q ss_pred ceeecccCcceeeccCCCCCccCCCCCCCceEEec
Q 017269 7 SYWCYRCNRIIRIQSRTEDAIVCPDCHTGFIEQIE 41 (374)
Q Consensus 7 ~YWCh~C~r~V~~~~~~~~~~~CP~C~~gFvEEi~ 41 (374)
.-+|..|...-.+.- ..-..+||.|++.=..++.
T Consensus 37 ~I~CnDC~~~s~v~~-h~lg~kC~~C~SyNTr~~~ 70 (79)
T 2k2d_A 37 DILCNDCNGRSTVQF-HILGMKCKICESYNTAQAG 70 (79)
T ss_dssp EEEESSSCCEEEEEC-CTTCCCCTTTSCCCEEESC
T ss_pred EEECCCCCCCccCCc-eeecccCcCCCCcCeEecC
Confidence 458999999876631 1112389999998777664
No 173
>2jz8_A Uncharacterized protein BH09830; zinc binding, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Bartonella henselae str}
Probab=29.20 E-value=17 Score=28.74 Aligned_cols=18 Identities=28% Similarity=0.576 Sum_probs=14.9
Q ss_pred CCCCccCCCCCCCceEEe
Q 017269 23 TEDAIVCPDCHTGFIEQI 40 (374)
Q Consensus 23 ~~~~~~CP~C~~gFvEEi 40 (374)
...++.||+|+--|+.+=
T Consensus 45 ~~g~~~CpYCg~~y~~~~ 62 (87)
T 2jz8_A 45 STDEKICPYCSTLYRYDP 62 (87)
T ss_dssp TCCEECCTTTCCEEECCT
T ss_pred CCCeEECCCCCCEeEcCC
Confidence 467899999999998753
No 174
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=28.94 E-value=37 Score=24.12 Aligned_cols=38 Identities=21% Similarity=0.633 Sum_probs=27.0
Q ss_pred CcccccCCccccCCCeEEccccCccchhhHHHHHhcCCCCCccCccCCC
Q 017269 186 SHCAVCKEPFQLNSEAREMPCKHIYHGECILPWLSMRNSCPLCRRELPN 234 (374)
Q Consensus 186 ~~C~ICle~f~~~~~~~~lpC~H~FH~~CI~~WL~~~~sCPvCR~~l~~ 234 (374)
..|+.|.+.+. ++.+.. -+..||.+|+ .|-.|...|..
T Consensus 6 ~~C~~C~~~I~-~~~~~a--~~~~~H~~CF--------~C~~C~~~L~~ 43 (69)
T 2cur_A 6 SGCVKCNKAIT-SGGITY--QDQPWHADCF--------VCVTCSKKLAG 43 (69)
T ss_dssp CCCSSSCCCCC-TTCEEE--TTEEECTTTT--------BCTTTCCBCTT
T ss_pred CCCcccCCEeC-cceEEE--CccccccCcC--------EECCCCCCCCC
Confidence 56999988875 333333 4778998885 58899888753
No 175
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2
Probab=28.88 E-value=15 Score=27.53 Aligned_cols=47 Identities=26% Similarity=0.556 Sum_probs=29.5
Q ss_pred CCcccccCCccccCCCeEEcc-ccCccchhhHHHHHh-----cCCCCCccCcc
Q 017269 185 ESHCAVCKEPFQLNSEAREMP-CKHIYHGECILPWLS-----MRNSCPLCRRE 231 (374)
Q Consensus 185 ~~~C~ICle~f~~~~~~~~lp-C~H~FH~~CI~~WL~-----~~~sCPvCR~~ 231 (374)
+..--||...+..+...+..- |.--||..|+.---. ..-.||.|+..
T Consensus 9 ~~~yCiC~~~~~~~~~MI~Cd~C~~WfH~~Cvg~~~~~~~~~~~~~C~~C~~~ 61 (75)
T 3kqi_A 9 VPVYCVCRLPYDVTRFMIECDACKDWFHGSCVGVEEEEAPDIDIYHCPNCEKT 61 (75)
T ss_dssp CCEETTTTEECCTTSCEEECTTTCCEEEHHHHTCCTTTGGGBSSCCCHHHHHH
T ss_pred CeeEEECCCcCCCCCCEEEcCCCCCCEecccccccccccCCCCEEECCCCccc
Confidence 344458877654333444433 999999999854321 23479999754
No 176
>2a20_A Regulating synaptic membrane exocytosis protein 2; zinc-finger domain, metal binding protein; NMR {Rattus norvegicus} PDB: 2cjs_C
Probab=28.88 E-value=5.5 Score=29.38 Aligned_cols=50 Identities=18% Similarity=0.441 Sum_probs=30.7
Q ss_pred cccCCCcccccCCc-cccCCCeEEccccCccchhhHHHHHh-cCC---CCCccCc
Q 017269 181 HVAKESHCAVCKEP-FQLNSEAREMPCKHIYHGECILPWLS-MRN---SCPLCRR 230 (374)
Q Consensus 181 ~~~~~~~C~ICle~-f~~~~~~~~lpC~H~FH~~CI~~WL~-~~~---sCPvCR~ 230 (374)
+......|.||+.. |..+-...-.-|+-.|+..|-..|-. .++ .|-+||.
T Consensus 5 ~~~d~~~C~iC~KTKFADG~Gh~C~yCk~r~CaRCGg~v~lr~~k~~WvC~lC~k 59 (62)
T 2a20_A 5 QKGDAPTCGICHKTKFADGCGHNCSYCQTKFCARCGGRVSLRSNKVMWVCNLCRK 59 (62)
T ss_dssp CSSCCCCCSSSSCSCCCSSCCEEBTTTCCEECTTSEEEEESSTTCEEEEEHHHHH
T ss_pred ccCCcchhhhhccceeccCCCccccccCCeeecccCCEeeecCCeEEEEehhhhh
Confidence 33456889999875 44443333344888888888766642 222 4666654
No 177
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=28.62 E-value=36 Score=25.07 Aligned_cols=39 Identities=21% Similarity=0.298 Sum_probs=28.7
Q ss_pred CCcccccCCccccCCCeEEccccCccchhhHHHHHhcCCCCCccCccCCC
Q 017269 185 ESHCAVCKEPFQLNSEAREMPCKHIYHGECILPWLSMRNSCPLCRRELPN 234 (374)
Q Consensus 185 ~~~C~ICle~f~~~~~~~~lpC~H~FH~~CI~~WL~~~~sCPvCR~~l~~ 234 (374)
...|+.|.+.+.. .. +..-+..||.+|+ .|-.|+..|..
T Consensus 15 ~~~C~~C~~~I~~-~~--~~a~~~~~H~~CF--------~C~~C~~~L~~ 53 (79)
T 1x62_A 15 LPMCDKCGTGIVG-VF--VKLRDRHRHPECY--------VCTDCGTNLKQ 53 (79)
T ss_dssp CCCCSSSCCCCCS-SC--EECSSCEECTTTT--------SCSSSCCCHHH
T ss_pred CCccccCCCCccC-cE--EEECcceeCcCcC--------eeCCCCCCCCC
Confidence 4679999998763 22 3335789999885 58899888753
No 178
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=28.60 E-value=16 Score=22.79 Aligned_cols=28 Identities=18% Similarity=0.476 Sum_probs=18.9
Q ss_pred CcccccCCccccCCCeEEccccCccchhhH
Q 017269 186 SHCAVCKEPFQLNSEAREMPCKHIYHGECI 215 (374)
Q Consensus 186 ~~C~ICle~f~~~~~~~~lpC~H~FH~~CI 215 (374)
..|+.|-+..-..+.+. .=+..||..|.
T Consensus 4 ~~C~~C~k~Vy~~Ek~~--~~g~~~Hk~CF 31 (31)
T 1zfo_A 4 PNCARCGKIVYPTEKVN--CLDKFWHKACF 31 (31)
T ss_dssp CBCSSSCSBCCGGGCCC--SSSSCCCGGGC
T ss_pred CcCCccCCEEecceeEE--ECCeEecccCC
Confidence 56999987765443332 34788999884
No 179
>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A
Probab=28.55 E-value=13 Score=23.30 Aligned_cols=13 Identities=31% Similarity=0.859 Sum_probs=9.4
Q ss_pred CCCCccCccCCCC
Q 017269 223 NSCPLCRRELPNE 235 (374)
Q Consensus 223 ~sCPvCR~~l~~~ 235 (374)
.+||+|+..+|..
T Consensus 4 ~~CpvCk~q~Pd~ 16 (28)
T 2jvx_A 4 FCCPKCQYQAPDM 16 (28)
T ss_dssp EECTTSSCEESSH
T ss_pred ccCccccccCcCh
Confidence 3699998877643
No 180
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=28.53 E-value=29 Score=24.56 Aligned_cols=42 Identities=24% Similarity=0.673 Sum_probs=29.9
Q ss_pred CCcccccCCccccCCCeEEccccCccchhhHHHHHhcCCCCCccCccCCCC
Q 017269 185 ESHCAVCKEPFQLNSEAREMPCKHIYHGECILPWLSMRNSCPLCRRELPNE 235 (374)
Q Consensus 185 ~~~C~ICle~f~~~~~~~~lpC~H~FH~~CI~~WL~~~~sCPvCR~~l~~~ 235 (374)
...|+.|.+.+...+.+.. .=+..||..|. .|-.|...|...
T Consensus 11 ~~~C~~C~~~i~~~e~~~~-~~~~~~H~~CF--------~C~~C~~~L~~~ 52 (72)
T 3f6q_B 11 SATCERCKGGFAPAEKIVN-SNGELYHEQCF--------VCAQCFQQFPEG 52 (72)
T ss_dssp TCBCTTTCCBCCTTCEEEE-ETTEEEETTTS--------SCTTTCCCCGGG
T ss_pred CccchhcCccccCCceEEE-eCcCeeCcCCC--------cccCCCCCCCCC
Confidence 3679999998775554322 34678999885 588898877554
No 181
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=28.35 E-value=24 Score=30.48 Aligned_cols=46 Identities=28% Similarity=0.624 Sum_probs=30.7
Q ss_pred CCCcccccCCcccc--CCCeEEccccCccchhhHHHHHhcCC--CCCccCc
Q 017269 184 KESHCAVCKEPFQL--NSEAREMPCKHIYHGECILPWLSMRN--SCPLCRR 230 (374)
Q Consensus 184 ~~~~C~ICle~f~~--~~~~~~lpC~H~FH~~CI~~WL~~~~--sCPvCR~ 230 (374)
.+..|.+|...|.. +....-..|+|.+|..|= .|+.... .|-+|+.
T Consensus 67 ~~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~-~~~~~~~~W~C~vC~k 116 (153)
T 2zet_C 67 NETHCARCLQPYRLLLNSRRQCLECSLFVCKSCS-HAHPEEQGWLCDPCHL 116 (153)
T ss_dssp GGTBCTTTCCBGGGCSSCCEECTTTCCEECGGGE-ECCSSSSSCEEHHHHH
T ss_pred CCccchhhcCccccccCCCCcCCCCCchhhcccc-cccCCCCcEeeHHHHH
Confidence 46889999998753 334444449999999997 3443222 4777754
No 182
>2ewl_A Protein E7; HPV, oncoprotein, zinc binding, virus-viral protein COMP; NMR {Human papillomavirus} SCOP: g.91.1.1 PDB: 2f8b_A
Probab=28.06 E-value=9.9 Score=27.56 Aligned_cols=25 Identities=28% Similarity=0.744 Sum_probs=18.0
Q ss_pred eecccCcceeeccCCC--------------CCccCCCCC
Q 017269 9 WCYRCNRIIRIQSRTE--------------DAIVCPDCH 33 (374)
Q Consensus 9 WCh~C~r~V~~~~~~~--------------~~~~CP~C~ 33 (374)
.|+.|.+.|++.+..+ -.++||.|-
T Consensus 15 ~C~~C~~~lRl~V~at~~~IR~lqqLLl~~L~lvCp~Ca 53 (56)
T 2ewl_A 15 VCCKCDGRIELTVESSAEDLRTLQQLFLSTLSFVCPWCA 53 (56)
T ss_dssp EBTTTCCEEEEEEECCHHHHHHHHHHHHHTCCBCCHHHH
T ss_pred ECCCCCCeEEEEEEeCchhHHHHHHHhhCCceEECcccc
Confidence 5999999999865332 257888773
No 183
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=27.81 E-value=24 Score=28.53 Aligned_cols=37 Identities=24% Similarity=0.653 Sum_probs=21.3
Q ss_pred cccccCCccccCCCeEEccccCccchhhHHHHHhcCCCCCccCccC
Q 017269 187 HCAVCKEPFQLNSEAREMPCKHIYHGECILPWLSMRNSCPLCRREL 232 (374)
Q Consensus 187 ~C~ICle~f~~~~~~~~lpC~H~FH~~CI~~WL~~~~sCPvCR~~l 232 (374)
.|+.|.+.+...+.++ ..-+..||..|. .|-.|...|
T Consensus 10 ~C~~C~~~I~~~e~~~-~a~~~~~H~~CF--------~C~~C~~~L 46 (123)
T 2l3k_A 10 LCASCDKRIRAYEMTM-RVKDKVYHLECF--------KCAACQKHF 46 (123)
T ss_dssp CCSSSSCCCCTTCCCC-CCSSCCCCTTTC--------BCTTTCCBC
T ss_pred cccCCCCeecCCceEE-EECCcccccccC--------ccccCCCCC
Confidence 5777777665433221 123667777764 466666666
No 184
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group}
Probab=27.21 E-value=6.9 Score=28.93 Aligned_cols=43 Identities=23% Similarity=0.463 Sum_probs=25.7
Q ss_pred CcccccCCccccCCCeEEcc---ccCccchhhHHHHH---h-----cCCCCCccCc
Q 017269 186 SHCAVCKEPFQLNSEAREMP---CKHIYHGECILPWL---S-----MRNSCPLCRR 230 (374)
Q Consensus 186 ~~C~ICle~f~~~~~~~~lp---C~H~FH~~CI~~WL---~-----~~~sCPvCR~ 230 (374)
..| ||......+ ..+..- |...||..|+.--- . .+-.||.||.
T Consensus 11 v~C-~C~~~~~~g-~mI~CD~~~C~~W~H~~Cvgi~~~~~~~~~~p~~~~C~~Cr~ 64 (68)
T 2rsd_A 11 VRC-ICSSTMVND-SMIQCEDQRCQVWQHLNCVLIPDKPGESAEVPPVFYCELCRL 64 (68)
T ss_dssp ECC-TTCCCSCCS-CEEECSCTTTCEEEETTTSCCCSSTTSCCCCCSSCCCHHHHH
T ss_pred EEe-ECCCCcCCC-CEEEECCCCCCCeEchhhCCCCcccccccCCCCcEECcCccC
Confidence 446 896654433 344442 88899999973210 0 1346999974
No 185
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=26.89 E-value=36 Score=29.68 Aligned_cols=42 Identities=21% Similarity=0.443 Sum_probs=29.1
Q ss_pred CCCcccccCCccccCCCeEEcc---ccCccchhhHHHHHhc----------CCCCCccC
Q 017269 184 KESHCAVCKEPFQLNSEAREMP---CKHIYHGECILPWLSM----------RNSCPLCR 229 (374)
Q Consensus 184 ~~~~C~ICle~f~~~~~~~~lp---C~H~FH~~CI~~WL~~----------~~sCPvCR 229 (374)
.+..|.||-+. .++.... |...|+..||..++.. .-.|=+|.
T Consensus 78 ~~~yC~wC~~G----g~l~~Cdn~~C~r~FC~~CI~~nvG~~~~~~i~~~d~W~Cy~C~ 132 (159)
T 3a1b_A 78 YQSYCTICCGG----REVLMCGNNNCCRCFCVECVDLLVGPGAAQAAIKEDPWNCYMCG 132 (159)
T ss_dssp SBSSCTTTSCC----SEEEECSSTTTCCEEEHHHHHHHTCTTHHHHHHTSSSCCCTTTC
T ss_pred CcceeeEecCC----CeEEeeCCCCCCCchhHHHHHHhcCHhHHHHHhccCCCEEEecC
Confidence 45789999653 3444443 8899999999999722 12688885
No 186
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=26.81 E-value=47 Score=26.66 Aligned_cols=49 Identities=6% Similarity=0.028 Sum_probs=29.4
Q ss_pred CcccccCCcccc-CCCeEEccccCccchhhHHHHHhcCCCCCccCccCCCC
Q 017269 186 SHCAVCKEPFQL-NSEAREMPCKHIYHGECILPWLSMRNSCPLCRRELPNE 235 (374)
Q Consensus 186 ~~C~ICle~f~~-~~~~~~lpC~H~FH~~CI~~WL~~~~sCPvCR~~l~~~ 235 (374)
..|..|...+.. +... ...=+..||..|...-+.....|-.|...|...
T Consensus 33 F~C~~C~~~L~~~~~~~-~~~~g~~yC~~cy~~~f~~~~~C~~C~~~I~~~ 82 (122)
T 1m3v_A 33 LKCSSCQAQLGDIGTSS-YTKSGMILCRNDYIRLFGNSGAGGSGGHMGSGG 82 (122)
T ss_dssp HCCSSSCCCTTTSEECC-EEETTEEECHHHHHHHHCCCCSSSCSSCCSCCE
T ss_pred CCcCCCCCcccccCCeE-EEECCeeecHHHHHHHcCCCCccccCCCCcCch
Confidence 567777766641 1111 122356777777766555444788888877654
No 187
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=26.75 E-value=82 Score=24.90 Aligned_cols=25 Identities=28% Similarity=0.620 Sum_probs=16.6
Q ss_pred ccCccchhhHH------HHHh-----cCCCCCccCc
Q 017269 206 CKHIYHGECIL------PWLS-----MRNSCPLCRR 230 (374)
Q Consensus 206 C~H~FH~~CI~------~WL~-----~~~sCPvCR~ 230 (374)
|...||..|+. .-|. ....||.|-.
T Consensus 8 c~~w~H~~c~~~~~~~~~~l~~lp~~~~~~c~~C~~ 43 (140)
T 2ku7_A 8 CDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTE 43 (140)
T ss_dssp CSSCHHHHHCCCCHHHHHHHHSSCTTTTCCSSCCTT
T ss_pred CCCccCCcccccCHHHHHHHhhccccceeeCccccc
Confidence 88999999962 1111 1357999954
No 188
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=26.36 E-value=45 Score=23.64 Aligned_cols=38 Identities=32% Similarity=0.751 Sum_probs=27.7
Q ss_pred CcccccCCccccCCCeEEccccCccchhhHHHHHhcCCCCCccCccCCC
Q 017269 186 SHCAVCKEPFQLNSEAREMPCKHIYHGECILPWLSMRNSCPLCRRELPN 234 (374)
Q Consensus 186 ~~C~ICle~f~~~~~~~~lpC~H~FH~~CI~~WL~~~~sCPvCR~~l~~ 234 (374)
..|+.|.+.+.. +. +..-+..||.+|. .|-.|...|..
T Consensus 6 ~~C~~C~~~I~~-~~--~~a~~~~~H~~CF--------~C~~C~~~L~~ 43 (70)
T 2d8z_A 6 SGCVQCKKPITT-GG--VTYREQPWHKECF--------VCTACRKQLSG 43 (70)
T ss_dssp CBCSSSCCBCCS-SE--EESSSSEEETTTS--------BCSSSCCBCTT
T ss_pred CCCcccCCeecc-ce--EEECccccCCCCC--------ccCCCCCcCCc
Confidence 579999988763 22 3346789999885 58899888753
No 189
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=26.27 E-value=37 Score=23.84 Aligned_cols=38 Identities=18% Similarity=0.521 Sum_probs=28.1
Q ss_pred CcccccCCccccCCCeEEccccCccchhhHHHHHhcCCCCCccCccCCC
Q 017269 186 SHCAVCKEPFQLNSEAREMPCKHIYHGECILPWLSMRNSCPLCRRELPN 234 (374)
Q Consensus 186 ~~C~ICle~f~~~~~~~~lpC~H~FH~~CI~~WL~~~~sCPvCR~~l~~ 234 (374)
..|+.|.+.+. +. .+..-+..||..|. .|-.|...|..
T Consensus 6 ~~C~~C~~~I~-~~--~~~a~~~~~H~~CF--------~C~~C~~~L~~ 43 (66)
T 1nyp_A 6 PICGACRRPIE-GR--VVNAMGKQWHVEHF--------VCAKCEKPFLG 43 (66)
T ss_dssp CEETTTTEECC-SC--EECCTTSBEETTTC--------BCTTTCCBCSS
T ss_pred CCCcccCCEec-ce--EEEECccccccCcC--------EECCCCCCCCC
Confidence 57999988876 33 34446789999885 58899888754
No 190
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=26.04 E-value=51 Score=23.75 Aligned_cols=42 Identities=24% Similarity=0.673 Sum_probs=29.4
Q ss_pred CCcccccCCccccCCCeEEccccCccchhhHHHHHhcCCCCCccCccCCCC
Q 017269 185 ESHCAVCKEPFQLNSEAREMPCKHIYHGECILPWLSMRNSCPLCRRELPNE 235 (374)
Q Consensus 185 ~~~C~ICle~f~~~~~~~~lpC~H~FH~~CI~~WL~~~~sCPvCR~~l~~~ 235 (374)
...|+.|.+.+...+.+.. .-+..||..|. .|-.|...|...
T Consensus 11 ~~~C~~C~~~I~~~~~~~~-a~~~~~H~~CF--------~C~~C~~~L~~~ 52 (77)
T 1g47_A 11 SATCERCKGGFAPAEKIVN-SNGELYHEQCF--------VCAQCFQQFPEG 52 (77)
T ss_dssp CCBCSSSCCBCCSTTTCEE-ETTEEECTTTC--------CCTTTCCCCGGG
T ss_pred CCCchhcCCccCCCceEEE-eCccEeccccC--------eECCCCCCCCCC
Confidence 4679999998865444322 24778998884 588898877554
No 191
>2ida_A Hypothetical protein; zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Rhodopseudomonas palustris} SCOP: g.44.1.5
Probab=25.82 E-value=26 Score=28.34 Aligned_cols=15 Identities=20% Similarity=0.461 Sum_probs=12.5
Q ss_pred CCceeecccCcceee
Q 017269 5 GLSYWCYRCNRIIRI 19 (374)
Q Consensus 5 ~~~YWCh~C~r~V~~ 19 (374)
....|||.|+..|..
T Consensus 73 ~~~vwcY~cd~~V~~ 87 (102)
T 2ida_A 73 EGWGWCYVDEVMFDL 87 (102)
T ss_dssp SCEEEETTTTEEEEC
T ss_pred CCCEEEcCCCcEEEC
Confidence 467999999999853
No 192
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=24.97 E-value=35 Score=27.83 Aligned_cols=32 Identities=22% Similarity=0.631 Sum_probs=21.9
Q ss_pred CceeecccCcceeeccCCCCCccCCCCCCCceEE
Q 017269 6 LSYWCYRCNRIIRIQSRTEDAIVCPDCHTGFIEQ 39 (374)
Q Consensus 6 ~~YWCh~C~r~V~~~~~~~~~~~CP~C~~gFvEE 39 (374)
..|-|-.|--...-. ......||.|.+..||+
T Consensus 66 ~p~~C~~CG~~F~~~--~~kPsrCP~CkSe~Ie~ 97 (105)
T 2gmg_A 66 KPAQCRKCGFVFKAE--INIPSRCPKCKSEWIEE 97 (105)
T ss_dssp CCCBBTTTCCBCCCC--SSCCSSCSSSCCCCBCC
T ss_pred ECcChhhCcCeeccc--CCCCCCCcCCCCCccCC
Confidence 457788887665222 23347899999988875
No 193
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens}
Probab=24.78 E-value=19 Score=24.98 Aligned_cols=40 Identities=28% Similarity=0.474 Sum_probs=24.4
Q ss_pred ccCCccccCCCeEEcc-ccCccchhhHHHHHh---cCCCCCccCc
Q 017269 190 VCKEPFQLNSEAREMP-CKHIYHGECILPWLS---MRNSCPLCRR 230 (374)
Q Consensus 190 ICle~f~~~~~~~~lp-C~H~FH~~CI~~WL~---~~~sCPvCR~ 230 (374)
||..... +...+.-. |..-||..|+.--.. ..-.||.|+.
T Consensus 8 ~C~~~~~-~~~MI~Cd~C~~W~H~~Cvgi~~~~~~~~~~C~~C~~ 51 (52)
T 3o7a_A 8 FCMKPFA-GRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQKCRD 51 (52)
T ss_dssp TTCCBCT-TCCEEECTTTCCEEETTTTTCCGGGCCSSCCCHHHHT
T ss_pred EeCCcCC-CCCEEEcCCCCccccccccCCCcccCCCcEECcCCCC
Confidence 6766543 32333333 899999999864322 3347888864
No 194
>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1
Probab=24.02 E-value=39 Score=23.22 Aligned_cols=36 Identities=22% Similarity=0.396 Sum_probs=25.1
Q ss_pred CCceeecccCcceee-------ccCCCCCccCCCCCCCceEEec
Q 017269 5 GLSYWCYRCNRIIRI-------QSRTEDAIVCPDCHTGFIEQIE 41 (374)
Q Consensus 5 ~~~YWCh~C~r~V~~-------~~~~~~~~~CP~C~~gFvEEi~ 41 (374)
...|-|..|...... +. .+....|+.|+..|...-.
T Consensus 12 ~k~~~C~~C~k~F~~~~~l~~~H~-~~k~~~C~~C~k~f~~~~~ 54 (62)
T 1vd4_A 12 RASFKCPVCSSTFTDLEANQLFDP-MTGTFRCTFCHTEVEEDES 54 (62)
T ss_dssp SSEEECSSSCCEEEHHHHHHHEET-TTTEEBCSSSCCBCEECTT
T ss_pred CCCccCCCCCchhccHHHhHhhcC-CCCCEECCCCCCccccCcc
Confidence 467999999874322 21 2345799999999987543
No 195
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=23.94 E-value=48 Score=24.37 Aligned_cols=40 Identities=28% Similarity=0.672 Sum_probs=28.2
Q ss_pred CCcccccCCccccCCCeEEccccCccchhhHHHHHhcCCCCCccCccCCCC
Q 017269 185 ESHCAVCKEPFQLNSEAREMPCKHIYHGECILPWLSMRNSCPLCRRELPNE 235 (374)
Q Consensus 185 ~~~C~ICle~f~~~~~~~~lpC~H~FH~~CI~~WL~~~~sCPvCR~~l~~~ 235 (374)
...|+.|.+.+. +..+ ..-+..||..|. +|-.|...|...
T Consensus 15 ~~~C~~C~~~I~-~~~~--~a~~~~~H~~CF--------~C~~C~~~L~~~ 54 (81)
T 2dlo_A 15 LEKCATCSQPIL-DRIL--RAMGKAYHPGCF--------TCVVCHRGLDGI 54 (81)
T ss_dssp CCBCTTTCCBCC-SCCE--EETTEEECTTTC--------BCSSSCCBCTTS
T ss_pred CCccccCCCeec-ceeE--EECCccccHHhc--------CcccCCCccCCC
Confidence 367999988876 3333 235788998885 589998887533
No 196
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=23.07 E-value=23 Score=25.69 Aligned_cols=35 Identities=23% Similarity=0.623 Sum_probs=23.2
Q ss_pred CcccccCCccccCCCeEEcc-----ccCccchhhHHHHHh
Q 017269 186 SHCAVCKEPFQLNSEAREMP-----CKHIYHGECILPWLS 220 (374)
Q Consensus 186 ~~C~ICle~f~~~~~~~~lp-----C~H~FH~~CI~~WL~ 220 (374)
..|+-|.-.++..+....|. |++.|+..|..+|-.
T Consensus 7 k~CP~C~~~Iek~~GCnhmtC~~~~C~~~FCw~C~~~~~~ 46 (60)
T 1wd2_A 7 KECPKCHVTIEKDGGCNHMVCRNQNCKAEFCWVCLGPWEP 46 (60)
T ss_dssp CCCTTTCCCCSSCCSCCSSSCCSSGGGSCCSSSSCSCSGG
T ss_pred eECcCCCCeeEeCCCCCcEEECCCCcCCEEeeCcCCCccc
Confidence 56888887776554333332 678888888877764
No 197
>1wfh_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=22.77 E-value=34 Score=25.49 Aligned_cols=27 Identities=22% Similarity=0.626 Sum_probs=22.5
Q ss_pred CceeecccCcceeeccCCCCCccCCCCCCCceE
Q 017269 6 LSYWCYRCNRIIRIQSRTEDAIVCPDCHTGFIE 38 (374)
Q Consensus 6 ~~YWCh~C~r~V~~~~~~~~~~~CP~C~~gFvE 38 (374)
....|..|.+.|.+. ...| .|+.-|--
T Consensus 14 ~~~rC~~C~kkvgl~-----~f~C-rCg~~FC~ 40 (64)
T 1wfh_A 14 RPNRCTVCRKRVGLT-----GFMC-RCGTTFCG 40 (64)
T ss_dssp SCCCCTTTCCCCCTT-----CEEC-SSSCEECT
T ss_pred cCCcChhhCCccCcc-----CEEe-ecCCEecc
Confidence 578999999998764 3899 79999975
No 198
>3c5k_A HD6, histone deacetylase 6; HDAC6, zinc finger, actin-binding, chromatin regulator, cytoplasm, hydrolase, metal-binding, nucleus, phosphoprotein; 1.55A {Homo sapiens} PDB: 3gv4_A 3phd_A
Probab=22.76 E-value=22 Score=28.90 Aligned_cols=16 Identities=44% Similarity=1.086 Sum_probs=12.9
Q ss_pred CCCceeecccCcceee
Q 017269 4 IGLSYWCYRCNRIIRI 19 (374)
Q Consensus 4 ~~~~YWCh~C~r~V~~ 19 (374)
.+.+.|||.|+..|.-
T Consensus 71 ~~~~vwCy~cd~~V~~ 86 (109)
T 3c5k_A 71 IDLSAWCYYCQAYVHH 86 (109)
T ss_dssp TTCCEEETTTTEEBCC
T ss_pred CCCCEEECCCCCEEec
Confidence 3568999999999853
No 199
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=22.16 E-value=45 Score=24.44 Aligned_cols=38 Identities=21% Similarity=0.525 Sum_probs=27.4
Q ss_pred CcccccCCccccCCCeEEccccCccchhhHHHHHhcCCCCCccCccCCC
Q 017269 186 SHCAVCKEPFQLNSEAREMPCKHIYHGECILPWLSMRNSCPLCRRELPN 234 (374)
Q Consensus 186 ~~C~ICle~f~~~~~~~~lpC~H~FH~~CI~~WL~~~~sCPvCR~~l~~ 234 (374)
..|+.|.+.+. +.. +..-+..||.+|. .|-.|...|..
T Consensus 16 ~~C~~C~~~I~-~~~--~~a~~~~~H~~CF--------~C~~C~~~L~~ 53 (81)
T 1x6a_A 16 EFCHGCSLLMT-GPF--MVAGEFKYHPECF--------ACMSCKVIIED 53 (81)
T ss_dssp CBCTTTCCBCC-SCC--BCCTTCCBCTTSC--------BCTTTCCBCCT
T ss_pred CcCccCCCCcC-ceE--EEECCceeccccC--------CccCCCCccCC
Confidence 56999988876 332 2235788998885 58899888754
No 200
>2jrr_A Uncharacterized protein; solution structure, SIR90, structural genomics, PSI-2, protein structure initiative; NMR {Silicibacter pomeroyi}
Probab=22.11 E-value=20 Score=26.99 Aligned_cols=17 Identities=18% Similarity=0.522 Sum_probs=14.3
Q ss_pred CCCccCCCCCCCceEEe
Q 017269 24 EDAIVCPDCHTGFIEQI 40 (374)
Q Consensus 24 ~~~~~CP~C~~gFvEEi 40 (374)
...+.||+|+--|+.+-
T Consensus 38 ~g~~~CpYCg~~f~l~~ 54 (67)
T 2jrr_A 38 TGWVECPYCDCKYVLKG 54 (67)
T ss_dssp TSEEEETTTTEEEEETT
T ss_pred CCeEECCCCCCEEEECC
Confidence 45789999999998764
No 201
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=21.99 E-value=57 Score=23.74 Aligned_cols=39 Identities=21% Similarity=0.557 Sum_probs=28.0
Q ss_pred CcccccCCccccCCCeEEccccCccchhhHHHHHhcCCCCCccCccCCCC
Q 017269 186 SHCAVCKEPFQLNSEAREMPCKHIYHGECILPWLSMRNSCPLCRRELPNE 235 (374)
Q Consensus 186 ~~C~ICle~f~~~~~~~~lpC~H~FH~~CI~~WL~~~~sCPvCR~~l~~~ 235 (374)
..|+.|.+.+.. ..+. .-+..||.+|+ .|-.|...|...
T Consensus 16 ~~C~~C~~~I~~-~~v~--a~~~~~H~~CF--------~C~~C~~~L~~~ 54 (80)
T 1x3h_A 16 PKCGGCNRPVLE-NYLS--AMDTVWHPECF--------VCGDCFTSFSTG 54 (80)
T ss_dssp CBCTTTCCBCCS-SCEE--ETTEEECTTTC--------BCSSSCCBSCSS
T ss_pred CccccCCCeecc-eeEE--ECCCeEecCcC--------ChhhCCCCCCCC
Confidence 579999888764 3333 34778998884 588998887654
No 202
>1dx8_A Rubredoxin; electron transport, zinc-substitution; NMR {Guillardia theta} SCOP: g.41.5.1 PDB: 1h7v_A
Probab=21.47 E-value=65 Score=24.13 Aligned_cols=34 Identities=26% Similarity=0.568 Sum_probs=23.3
Q ss_pred CCCCCCceeecccCcceeecc--------------CCCCCccCCCCCC
Q 017269 1 MSSIGLSYWCYRCNRIIRIQS--------------RTEDAIVCPDCHT 34 (374)
Q Consensus 1 mss~~~~YWCh~C~r~V~~~~--------------~~~~~~~CP~C~~ 34 (374)
|+-....|-|-.|-=...... .-.++-+||.|+-
T Consensus 1 m~~~m~~y~C~vCGyiYd~~~Gdp~~gi~pGT~f~~lPddw~CP~Cga 48 (70)
T 1dx8_A 1 MEIDEGKYECEACGYIYEPEKGDKFAGIPPGTPFVDLSDSFMCPACRS 48 (70)
T ss_dssp CBCCSSCEEETTTCCEECTTTCCTTTTCCSSCCGGGSCTTCBCTTTCC
T ss_pred CCCCCceEEeCCCCEEEcCCCCCcccCcCCCCchhhCCCCCcCCCCCC
Confidence 666678899999987665321 0123468999996
No 203
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=21.40 E-value=32 Score=27.85 Aligned_cols=12 Identities=25% Similarity=0.811 Sum_probs=10.5
Q ss_pred ccchhhHHHHHh
Q 017269 209 IYHGECILPWLS 220 (374)
Q Consensus 209 ~FH~~CI~~WL~ 220 (374)
-||..||.+|+.
T Consensus 41 GFCRNCLskWy~ 52 (104)
T 3fyb_A 41 DFCRNCLAKWLM 52 (104)
T ss_dssp SCCHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 489999999985
No 204
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=21.39 E-value=32 Score=27.90 Aligned_cols=12 Identities=17% Similarity=0.681 Sum_probs=10.5
Q ss_pred ccchhhHHHHHh
Q 017269 209 IYHGECILPWLS 220 (374)
Q Consensus 209 ~FH~~CI~~WL~ 220 (374)
-||..|+.+|+.
T Consensus 42 GFCRNCLskWy~ 53 (105)
T 2o35_A 42 GFCRNCLSNWYR 53 (105)
T ss_dssp SCCHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 489999999984
No 205
>1wg2_A Zinc finger (AN1-like) family protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=20.66 E-value=25 Score=26.20 Aligned_cols=28 Identities=21% Similarity=0.711 Sum_probs=22.8
Q ss_pred CceeecccCcceeeccCCCCCccCCCCCCCceEE
Q 017269 6 LSYWCYRCNRIIRIQSRTEDAIVCPDCHTGFIEQ 39 (374)
Q Consensus 6 ~~YWCh~C~r~V~~~~~~~~~~~CP~C~~gFvEE 39 (374)
..-.|..|.+.|.+. ...| .|+.-|--.
T Consensus 14 ~~~rC~~C~kkvgl~-----~f~C-rCg~~FC~~ 41 (64)
T 1wg2_A 14 PNNRCFSCNKKVGVM-----GFKC-KCGSTFCGS 41 (64)
T ss_dssp CSCSCTTTCCCCTTS-----CEEC-TTSCEECSS
T ss_pred cCCcChhhCCccccc-----CeEe-ecCCEeccc
Confidence 467999999998764 3899 999999753
No 206
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=20.55 E-value=62 Score=24.61 Aligned_cols=11 Identities=36% Similarity=1.014 Sum_probs=5.6
Q ss_pred CcccccCCccc
Q 017269 186 SHCAVCKEPFQ 196 (374)
Q Consensus 186 ~~C~ICle~f~ 196 (374)
..|+.|.+.+.
T Consensus 6 ~~C~~C~~~I~ 16 (101)
T 2cup_A 6 SGCVECRKPIG 16 (101)
T ss_dssp CBCSSSCCBCC
T ss_pred CcCcccCCccc
Confidence 34555555544
No 207
>1wfp_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=20.53 E-value=31 Score=26.39 Aligned_cols=28 Identities=21% Similarity=0.663 Sum_probs=22.9
Q ss_pred CCceeecccCcceeeccCCCCCccCCCCCCCceE
Q 017269 5 GLSYWCYRCNRIIRIQSRTEDAIVCPDCHTGFIE 38 (374)
Q Consensus 5 ~~~YWCh~C~r~V~~~~~~~~~~~CP~C~~gFvE 38 (374)
.....|+.|.+.|.+. ...| .|+.-|--
T Consensus 23 ~~~~RC~~C~kkvgL~-----~f~C-rCg~~FCs 50 (74)
T 1wfp_A 23 STATRCLSCNKKVGVT-----GFKC-RCGSTFCG 50 (74)
T ss_dssp CCCCBCSSSCCBCTTT-----CEEC-TTSCEECT
T ss_pred ccCccchhhcCccccc-----ceEe-ccCCEecc
Confidence 3567899999998775 4899 89999975
No 208
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=20.46 E-value=18 Score=26.08 Aligned_cols=41 Identities=24% Similarity=0.609 Sum_probs=24.7
Q ss_pred CCcccccCCccccCCCeEEcc---cc-CccchhhHHHHHhc----CCCCCccCc
Q 017269 185 ESHCAVCKEPFQLNSEAREMP---CK-HIYHGECILPWLSM----RNSCPLCRR 230 (374)
Q Consensus 185 ~~~C~ICle~f~~~~~~~~lp---C~-H~FH~~CI~~WL~~----~~sCPvCR~ 230 (374)
...| ||.+.. .+ ..+.-- |. ..||..|+. |.. +-.||.|+.
T Consensus 9 ~~yC-~C~~~~-~g-~mi~CD~~~C~~~wfH~~Cvg--l~~~p~~~w~Cp~C~~ 57 (59)
T 3c6w_A 9 PTYC-LCHQVS-YG-EMIGCDNPDCPIEWFHFACVD--LTTKPKGKWFCPRCVQ 57 (59)
T ss_dssp CEET-TTTEEC-CS-EEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CcEE-ECCCCC-CC-CeeEeeCCCCCCCCEecccCC--cccCCCCCEECcCccC
Confidence 3456 997753 22 222221 55 589999997 432 337999864
No 209
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=20.16 E-value=65 Score=25.65 Aligned_cols=45 Identities=13% Similarity=0.217 Sum_probs=28.5
Q ss_pred CcccccCCccccCCCeEEccccCccchhhHHHHHhcCCCCCccCccCCC
Q 017269 186 SHCAVCKEPFQLNSEAREMPCKHIYHGECILPWLSMRNSCPLCRRELPN 234 (374)
Q Consensus 186 ~~C~ICle~f~~~~~~~~lpC~H~FH~~CI~~WL~~~~sCPvCR~~l~~ 234 (374)
..|..|...+... .....=+..||..|... .....|..|...|..
T Consensus 31 F~C~~C~~~L~~~--~f~~~~g~~yC~~cy~~--~~~~~C~~C~~~I~~ 75 (126)
T 2xqn_T 31 FCCFDCDSILAGE--IYVMVNDKPVCKPCYVK--NHAVVCQGCHNAIDP 75 (126)
T ss_dssp SBCTTTCCBCTTS--EEEEETTEEEEHHHHHH--HSCCBCTTTCSBCCT
T ss_pred CCcCCCCCCCCcC--EEEeECCEEechHHhCc--CcCccCcccCCcCCc
Confidence 6788887776522 22223466777777644 234679999887764
No 210
>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*
Probab=20.07 E-value=49 Score=32.57 Aligned_cols=32 Identities=19% Similarity=0.482 Sum_probs=20.7
Q ss_pred CceeecccCcceeeccCCCCCccCCCCCCCce
Q 017269 6 LSYWCYRCNRIIRIQSRTEDAIVCPDCHTGFI 37 (374)
Q Consensus 6 ~~YWCh~C~r~V~~~~~~~~~~~CP~C~~gFv 37 (374)
--|.|+.|..+............||+|++.+.
T Consensus 243 ~v~~C~~C~~~~~~~~~~~~~~~C~~cg~~~~ 274 (392)
T 3axs_A 243 YIQYCFNCMNREVVTDLYKFKEKCPHCGSKFH 274 (392)
T ss_dssp EEEECTTTCCEEEECCGGGCCSBCTTTCSBCE
T ss_pred eEEECCCCCCeEeecCCCCCCCcCCCCCCccc
Confidence 45899999877543211123468999987444
Done!