Query 017271
Match_columns 374
No_of_seqs 298 out of 1368
Neff 5.3
Searched_HMMs 46136
Date Fri Mar 29 07:06:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017271.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017271hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2772 Transaldolase [Carbohy 100.0 3.7E-77 8E-82 570.3 22.4 287 58-353 13-301 (337)
2 PTZ00411 transaldolase-like pr 100.0 2.8E-75 6E-80 574.9 26.3 281 57-350 1-296 (333)
3 PRK12346 transaldolase A; Prov 100.0 1E-74 2.2E-79 567.1 26.9 278 59-350 2-282 (316)
4 TIGR00874 talAB transaldolase. 100.0 7.6E-74 1.7E-78 561.4 26.4 278 59-350 1-283 (317)
5 cd00957 Transaldolase_TalAB Tr 100.0 1.8E-73 4E-78 558.4 26.4 279 59-351 1-284 (313)
6 PRK05269 transaldolase B; Prov 100.0 3.9E-72 8.4E-77 550.5 26.2 266 57-335 1-266 (318)
7 PRK12309 transaldolase/EF-hand 100.0 1.8E-71 3.9E-76 558.9 26.6 271 57-339 2-274 (391)
8 cd00439 Transaldolase Transald 100.0 5E-56 1.1E-60 424.5 21.7 234 70-315 2-241 (252)
9 COG0176 MipB Transaldolase [Ca 100.0 2.3E-56 4.9E-61 421.4 14.2 206 61-320 1-212 (239)
10 PRK03343 transaldolase; Valida 100.0 8.3E-53 1.8E-57 419.5 22.8 252 56-321 12-308 (368)
11 PF00923 Transaldolase: Transa 100.0 7.5E-53 1.6E-57 408.6 15.7 232 70-321 1-238 (287)
12 cd00955 Transaldolase_like Tra 100.0 1.4E-51 3E-56 407.1 20.2 246 59-321 2-292 (338)
13 TIGR00875 fsa_talC_mipB fructo 100.0 2.3E-51 4.9E-56 383.8 16.0 198 69-328 2-205 (213)
14 PRK01362 putative translaldola 100.0 6.6E-51 1.4E-55 380.9 16.2 198 69-328 2-205 (214)
15 PRK12655 fructose-6-phosphate 100.0 4.8E-49 1E-53 369.7 15.4 198 69-328 2-207 (220)
16 PRK12653 fructose-6-phosphate 100.0 6.1E-49 1.3E-53 369.0 15.3 198 69-328 2-207 (220)
17 PRK12656 fructose-6-phosphate 100.0 8.2E-49 1.8E-53 368.4 15.8 200 69-328 2-209 (222)
18 TIGR00876 tal_mycobact transal 100.0 2.8E-46 6.1E-51 369.6 20.7 253 56-321 2-299 (350)
19 cd00956 Transaldolase_FSA Tran 100.0 1.7E-46 3.8E-51 350.2 16.9 199 69-328 1-205 (211)
20 PRK12376 putative translaldola 100.0 2.3E-46 5E-51 354.6 14.6 187 69-317 7-208 (236)
21 TIGR02134 transald_staph trans 100.0 2.2E-45 4.7E-50 347.7 13.5 191 69-321 7-214 (236)
22 PRK09533 bifunctional transald 100.0 7.2E-43 1.6E-47 380.7 19.8 253 56-321 11-316 (948)
23 PRK03903 transaldolase; Provis 100.0 1.9E-41 4.1E-46 326.6 15.5 185 119-320 18-222 (274)
24 CHL00162 thiG thiamin biosynth 93.7 0.6 1.3E-05 45.7 10.2 129 160-310 79-220 (267)
25 cd02809 alpha_hydroxyacid_oxid 93.1 1.3 2.8E-05 43.5 11.9 142 148-317 114-265 (299)
26 PRK00208 thiG thiazole synthas 91.9 0.96 2.1E-05 44.1 8.9 125 160-312 71-208 (250)
27 TIGR03128 RuMP_HxlA 3-hexulose 91.6 1 2.2E-05 41.3 8.4 110 169-309 12-134 (206)
28 PF05690 ThiG: Thiazole biosyn 91.3 0.87 1.9E-05 44.1 7.8 142 143-311 53-207 (247)
29 cd04728 ThiG Thiazole synthase 91.1 1.4 3.1E-05 42.9 9.1 125 160-312 71-208 (248)
30 PRK06806 fructose-bisphosphate 90.3 0.8 1.7E-05 45.1 6.9 137 150-314 97-236 (281)
31 PF03740 PdxJ: Pyridoxal phosp 86.9 8.5 0.00018 37.4 11.1 87 144-245 58-160 (239)
32 PTZ00314 inosine-5'-monophosph 84.4 14 0.0003 39.3 12.4 120 167-311 242-376 (495)
33 COG2022 ThiG Uncharacterized e 84.0 7.1 0.00015 38.0 9.0 97 193-310 114-213 (262)
34 COG5016 Pyruvate/oxaloacetate 83.5 8.3 0.00018 40.3 9.8 86 146-239 139-237 (472)
35 PRK11840 bifunctional sulfur c 81.9 7.6 0.00017 39.3 8.7 124 160-311 145-281 (326)
36 PRK06015 keto-hydroxyglutarate 81.7 6.8 0.00015 37.0 7.9 71 162-240 13-87 (201)
37 PRK13398 3-deoxy-7-phosphohept 81.3 25 0.00055 34.4 12.0 122 150-281 26-162 (266)
38 PRK05718 keto-hydroxyglutarate 81.3 7.9 0.00017 36.7 8.2 72 161-240 23-98 (212)
39 cd03315 MLE_like Muconate lact 81.0 30 0.00065 33.0 12.3 113 141-283 119-234 (265)
40 PF01729 QRPTase_C: Quinolinat 81.0 2.7 5.9E-05 38.4 4.9 86 197-308 68-155 (169)
41 PRK05265 pyridoxine 5'-phospha 81.0 25 0.00055 34.2 11.6 93 134-245 54-162 (239)
42 TIGR01302 IMP_dehydrog inosine 80.7 14 0.0003 38.7 10.6 128 165-311 223-359 (450)
43 cd03321 mandelate_racemase Man 80.6 26 0.00055 35.2 12.1 113 141-283 176-291 (355)
44 cd00564 TMP_TenI Thiamine mono 80.2 33 0.00072 30.2 11.6 97 199-313 85-183 (196)
45 cd00003 PNPsynthase Pyridoxine 79.9 15 0.00032 35.7 9.5 87 144-245 57-159 (234)
46 PRK05848 nicotinate-nucleotide 79.2 3.9 8.6E-05 40.2 5.6 86 199-309 169-258 (273)
47 PRK11858 aksA trans-homoaconit 78.9 25 0.00054 36.0 11.5 133 160-308 21-165 (378)
48 TIGR00559 pdxJ pyridoxine 5'-p 78.4 28 0.00061 33.8 11.0 88 143-245 56-159 (237)
49 PRK00043 thiE thiamine-phospha 78.2 29 0.00062 31.5 10.7 103 193-312 88-192 (212)
50 PRK07107 inosine 5-monophospha 77.8 11 0.00025 40.1 8.9 126 166-310 242-383 (502)
51 TIGR01859 fruc_bis_ald_ fructo 77.8 16 0.00034 36.1 9.4 139 150-316 97-238 (282)
52 TIGR01182 eda Entner-Doudoroff 76.9 14 0.00029 35.0 8.3 69 162-238 17-89 (204)
53 PRK06552 keto-hydroxyglutarate 76.5 13 0.00027 35.3 8.0 77 162-245 22-105 (213)
54 PF01081 Aldolase: KDPG and KH 76.3 13 0.00027 35.0 7.9 70 162-239 17-90 (196)
55 cd00452 KDPG_aldolase KDPG and 76.1 4.5 9.7E-05 37.0 4.7 95 192-315 82-178 (190)
56 PRK07114 keto-hydroxyglutarate 75.2 16 0.00035 35.0 8.4 72 161-240 23-102 (222)
57 PRK01130 N-acetylmannosamine-6 75.0 12 0.00025 34.9 7.3 125 151-307 8-145 (221)
58 cd04726 KGPDC_HPS 3-Keto-L-gul 74.8 13 0.00028 33.6 7.5 92 190-307 29-132 (202)
59 cd03319 L-Ala-DL-Glu_epimerase 73.5 61 0.0013 31.8 12.3 111 142-283 169-282 (316)
60 PLN02535 glycolate oxidase 73.2 11 0.00024 38.6 7.2 104 193-318 209-317 (364)
61 PRK12331 oxaloacetate decarbox 72.3 23 0.00049 37.4 9.4 95 137-239 128-231 (448)
62 cd03324 rTSbeta_L-fuconate_deh 72.0 49 0.0011 34.3 11.7 112 142-283 231-348 (415)
63 TIGR02151 IPP_isom_2 isopenten 71.2 69 0.0015 32.2 12.2 114 200-317 169-292 (333)
64 cd07939 DRE_TIM_NifV Streptomy 70.7 64 0.0014 30.9 11.5 133 160-307 15-158 (259)
65 cd03328 MR_like_3 Mandelate ra 70.7 60 0.0013 32.6 11.8 113 142-284 173-290 (352)
66 PRK09485 mmuM homocysteine met 70.4 97 0.0021 30.6 12.9 86 131-218 86-190 (304)
67 cd02811 IDI-2_FMN Isopentenyl- 70.0 26 0.00056 35.1 8.9 112 200-317 168-293 (326)
68 PLN02746 hydroxymethylglutaryl 69.1 48 0.001 33.9 10.6 108 160-283 63-178 (347)
69 PRK00507 deoxyribose-phosphate 69.1 91 0.002 29.7 12.0 154 136-316 44-218 (221)
70 PRK07428 nicotinate-nucleotide 68.2 7.7 0.00017 38.5 4.6 69 216-309 202-272 (288)
71 cd03325 D-galactonate_dehydrat 67.6 58 0.0013 32.6 10.9 112 142-283 167-281 (352)
72 cd03322 rpsA The starvation se 67.5 88 0.0019 31.5 12.2 115 139-283 151-268 (361)
73 cd04737 LOX_like_FMN L-Lactate 67.4 24 0.00051 36.1 8.1 103 194-318 208-315 (351)
74 PRK05567 inosine 5'-monophosph 67.4 15 0.00033 38.7 7.0 127 167-310 229-362 (486)
75 TIGR01108 oadA oxaloacetate de 67.2 28 0.0006 37.9 9.0 96 138-241 124-228 (582)
76 PRK06096 molybdenum transport 67.1 11 0.00025 37.3 5.6 83 200-308 178-264 (284)
77 cd03329 MR_like_4 Mandelate ra 67.1 73 0.0016 32.1 11.5 112 142-283 180-295 (368)
78 cd03174 DRE_TIM_metallolyase D 66.9 28 0.0006 32.7 8.0 134 160-308 14-166 (265)
79 PF01070 FMN_dh: FMN-dependent 66.5 14 0.0003 37.7 6.2 104 194-319 212-320 (356)
80 cd00381 IMPDH IMPDH: The catal 65.0 83 0.0018 31.5 11.3 99 197-313 121-231 (325)
81 PRK14040 oxaloacetate decarbox 64.2 38 0.00082 37.0 9.3 98 136-241 128-234 (593)
82 PRK15072 bifunctional D-altron 63.8 95 0.0021 31.9 11.8 115 139-283 194-311 (404)
83 cd03327 MR_like_2 Mandelate ra 63.6 86 0.0019 31.3 11.2 110 143-282 163-275 (341)
84 TIGR02660 nifV_homocitr homoci 63.4 72 0.0016 32.4 10.7 108 160-282 18-128 (365)
85 PRK08208 coproporphyrinogen II 63.1 81 0.0018 32.7 11.2 80 151-241 129-232 (430)
86 PRK12581 oxaloacetate decarbox 63.1 51 0.0011 35.1 9.8 86 147-240 147-245 (468)
87 PRK14042 pyruvate carboxylase 62.9 49 0.0011 36.2 9.9 93 137-237 128-229 (596)
88 cd03316 MR_like Mandelate race 62.9 91 0.002 30.9 11.2 111 142-282 180-293 (357)
89 PF09370 TIM-br_sig_trns: TIM- 62.8 56 0.0012 32.4 9.3 96 134-242 65-182 (268)
90 PF01645 Glu_synthase: Conserv 62.8 31 0.00066 35.6 7.9 129 143-315 165-310 (368)
91 PRK05437 isopentenyl pyrophosp 62.5 99 0.0021 31.4 11.5 113 199-317 175-299 (352)
92 PRK09261 phospho-2-dehydro-3-d 62.3 38 0.00081 34.8 8.3 86 142-228 44-155 (349)
93 cd04741 DHOD_1A_like Dihydroor 62.1 1.4E+02 0.003 29.4 12.2 104 136-241 144-276 (294)
94 PRK12330 oxaloacetate decarbox 61.9 45 0.00098 35.7 9.2 97 137-241 129-236 (499)
95 PRK12755 phospho-2-dehydro-3-d 61.5 42 0.0009 34.5 8.5 85 142-227 45-155 (353)
96 PRK09282 pyruvate carboxylase 60.8 48 0.001 36.2 9.4 95 138-240 129-236 (592)
97 PRK13347 coproporphyrinogen II 60.2 30 0.00066 36.1 7.5 77 150-237 139-239 (453)
98 PRK05692 hydroxymethylglutaryl 59.8 62 0.0014 31.9 9.2 108 160-283 21-136 (287)
99 cd03326 MR_like_1 Mandelate ra 59.7 1.3E+02 0.0028 30.9 11.8 110 143-282 197-313 (385)
100 TIGR00977 LeuA_rel 2-isopropyl 59.3 37 0.00081 36.5 8.1 136 158-308 16-174 (526)
101 TIGR01334 modD putative molybd 59.3 15 0.00034 36.2 4.9 82 201-308 178-263 (277)
102 PRK05742 nicotinate-nucleotide 58.5 18 0.00038 35.8 5.1 94 186-309 161-262 (277)
103 PRK07379 coproporphyrinogen II 58.0 49 0.0011 34.0 8.5 44 197-240 152-205 (400)
104 PRK15440 L-rhamnonate dehydrat 58.0 1.2E+02 0.0027 31.2 11.4 112 142-283 199-315 (394)
105 smart00052 EAL Putative diguan 57.6 1.5E+02 0.0032 26.8 12.8 136 149-305 84-228 (241)
106 PRK12457 2-dehydro-3-deoxyphos 57.6 68 0.0015 32.0 8.9 123 152-280 17-157 (281)
107 TIGR02534 mucon_cyclo muconate 57.4 1.7E+02 0.0038 29.4 12.2 111 142-282 178-291 (368)
108 COG1891 Uncharacterized protei 57.1 26 0.00056 33.0 5.6 106 186-309 22-152 (235)
109 cd03323 D-glucarate_dehydratas 57.0 1.5E+02 0.0032 30.5 11.8 108 142-283 205-315 (395)
110 PRK00366 ispG 4-hydroxy-3-meth 56.6 43 0.00094 34.4 7.6 84 151-241 27-112 (360)
111 PRK08446 coproporphyrinogen II 56.1 2.3E+02 0.0049 28.5 13.9 45 197-241 135-189 (350)
112 PRK14041 oxaloacetate decarbox 55.7 64 0.0014 34.3 9.0 94 138-239 128-230 (467)
113 cd04726 KGPDC_HPS 3-Keto-L-gul 55.4 30 0.00066 31.2 5.9 94 199-312 93-190 (202)
114 TIGR03128 RuMP_HxlA 3-hexulose 55.4 40 0.00087 30.7 6.7 101 192-312 82-190 (206)
115 cd02922 FCB2_FMN Flavocytochro 54.9 46 0.001 33.8 7.6 105 194-318 200-310 (344)
116 PRK07896 nicotinate-nucleotide 54.6 10 0.00022 37.7 2.8 85 199-309 187-275 (289)
117 cd04729 NanE N-acetylmannosami 54.4 28 0.0006 32.4 5.5 90 194-307 47-149 (219)
118 cd03320 OSBS o-Succinylbenzoat 54.1 1.5E+02 0.0032 28.3 10.7 110 142-282 118-229 (263)
119 cd07948 DRE_TIM_HCS Saccharomy 54.0 1.2E+02 0.0025 29.5 10.0 132 160-306 17-159 (262)
120 PRK06294 coproporphyrinogen II 54.0 60 0.0013 32.9 8.2 78 150-238 90-191 (370)
121 PRK09249 coproporphyrinogen II 53.8 1.2E+02 0.0025 31.7 10.6 78 150-238 138-239 (453)
122 cd03318 MLE Muconate Lactonizi 53.8 2E+02 0.0043 28.8 11.9 112 142-283 179-293 (365)
123 PRK07315 fructose-bisphosphate 53.7 75 0.0016 31.6 8.7 136 149-312 98-236 (293)
124 TIGR01361 DAHP_synth_Bsub phos 53.6 68 0.0015 31.2 8.2 119 156-281 30-160 (260)
125 PRK05660 HemN family oxidoredu 53.5 1.3E+02 0.0028 30.6 10.6 80 151-241 95-198 (378)
126 PRK08385 nicotinate-nucleotide 52.3 20 0.00042 35.5 4.3 98 186-309 155-260 (278)
127 PRK09140 2-dehydro-3-deoxy-6-p 52.1 26 0.00055 32.9 4.9 94 192-313 89-184 (206)
128 PRK08072 nicotinate-nucleotide 51.7 30 0.00065 34.2 5.5 95 186-309 159-261 (277)
129 PRK09389 (R)-citramalate synth 51.6 1.3E+02 0.0027 32.2 10.5 134 159-307 18-162 (488)
130 PF03437 BtpA: BtpA family; I 51.4 56 0.0012 32.0 7.3 86 150-235 7-108 (254)
131 PLN02489 homocysteine S-methyl 51.1 2.4E+02 0.0052 28.5 12.0 83 132-216 96-215 (335)
132 TIGR02708 L_lactate_ox L-lacta 51.0 45 0.00097 34.4 6.8 104 194-319 215-323 (367)
133 PRK05198 2-dehydro-3-deoxyphos 50.7 1.8E+02 0.0039 28.8 10.6 123 152-280 11-151 (264)
134 PRK08745 ribulose-phosphate 3- 50.7 73 0.0016 30.4 7.8 47 266-312 155-203 (223)
135 COG0119 LeuA Isopropylmalate/h 50.2 1.1E+02 0.0023 32.1 9.5 134 158-306 17-164 (409)
136 TIGR00693 thiE thiamine-phosph 50.2 1.9E+02 0.0041 25.9 11.1 96 200-312 87-184 (196)
137 PRK05628 coproporphyrinogen II 49.6 81 0.0017 31.8 8.4 44 197-240 145-198 (375)
138 PRK05799 coproporphyrinogen II 49.2 83 0.0018 31.7 8.4 77 151-238 87-187 (374)
139 PLN03033 2-dehydro-3-deoxyphos 49.1 1.9E+02 0.0041 29.1 10.5 125 152-282 17-159 (290)
140 cd04730 NPD_like 2-Nitropropan 48.5 2.2E+02 0.0048 26.2 11.0 104 192-315 86-192 (236)
141 TIGR01303 IMP_DH_rel_1 IMP deh 48.0 50 0.0011 35.1 6.8 123 169-310 228-359 (475)
142 PRK08091 ribulose-phosphate 3- 47.9 13 0.00028 35.7 2.3 132 166-312 75-211 (228)
143 TIGR01362 KDO8P_synth 3-deoxy- 47.8 1.3E+02 0.0028 29.7 9.0 114 162-281 13-144 (258)
144 PRK07455 keto-hydroxyglutarate 47.6 27 0.00057 32.2 4.2 86 200-311 96-183 (187)
145 TIGR01305 GMP_reduct_1 guanosi 47.0 3E+02 0.0066 28.3 11.8 132 149-308 95-241 (343)
146 PRK06552 keto-hydroxyglutarate 46.9 44 0.00095 31.6 5.6 109 169-314 79-189 (213)
147 PF00563 EAL: EAL domain; Int 46.9 1.1E+02 0.0024 27.5 8.2 135 148-305 86-228 (236)
148 PRK09058 coproporphyrinogen II 46.8 1.9E+02 0.0042 30.2 10.9 81 150-241 150-254 (449)
149 PRK09057 coproporphyrinogen II 46.6 90 0.0019 31.7 8.2 45 197-241 141-194 (380)
150 cd01568 QPRTase_NadC Quinolina 46.6 35 0.00077 33.3 5.1 84 198-308 170-255 (269)
151 TIGR02090 LEU1_arch isopropylm 46.6 2.1E+02 0.0045 29.1 10.8 133 160-307 17-160 (363)
152 cd06556 ICL_KPHMT Members of t 45.6 2.9E+02 0.0062 26.7 12.3 92 136-235 59-174 (240)
153 PRK06582 coproporphyrinogen II 45.2 1.3E+02 0.0027 31.0 9.1 45 197-241 148-201 (390)
154 PLN02979 glycolate oxidase 44.8 77 0.0017 32.8 7.3 105 193-319 209-318 (366)
155 COG0320 LipA Lipoate synthase 44.7 27 0.00059 34.9 3.9 134 199-362 139-288 (306)
156 cd07943 DRE_TIM_HOA 4-hydroxy- 44.4 1.4E+02 0.0031 28.5 8.9 71 161-239 137-219 (263)
157 PRK12822 phospho-2-dehydro-3-d 44.4 74 0.0016 32.8 7.1 76 142-221 44-148 (356)
158 PRK07695 transcriptional regul 44.1 43 0.00094 30.6 5.0 85 209-312 95-181 (201)
159 PRK14017 galactonate dehydrata 43.9 2.5E+02 0.0054 28.5 10.9 110 143-282 169-281 (382)
160 cd03332 LMO_FMN L-Lactate 2-mo 43.7 61 0.0013 33.6 6.5 105 193-319 239-348 (383)
161 cd07945 DRE_TIM_CMS Leptospira 43.7 1.9E+02 0.0042 28.3 9.8 113 158-284 12-132 (280)
162 TIGR00078 nadC nicotinate-nucl 43.0 47 0.001 32.5 5.3 83 197-308 166-250 (265)
163 cd04739 DHOD_like Dihydroorota 43.0 3.5E+02 0.0077 27.0 12.1 128 136-282 150-294 (325)
164 PRK05904 coproporphyrinogen II 42.6 1.2E+02 0.0027 30.6 8.5 81 151-242 91-195 (353)
165 TIGR00538 hemN oxygen-independ 42.3 96 0.0021 32.3 7.8 76 151-237 139-238 (455)
166 PRK10060 RNase II stability mo 42.3 4.1E+02 0.0089 29.0 13.0 136 149-305 492-636 (663)
167 TIGR01304 IMP_DH_rel_2 IMP deh 41.6 3.9E+02 0.0085 27.6 11.9 102 204-316 183-292 (369)
168 cd01948 EAL EAL domain. This d 41.3 2.7E+02 0.0058 25.0 12.4 137 148-305 82-227 (240)
169 cd04729 NanE N-acetylmannosami 41.0 62 0.0013 30.0 5.6 94 199-312 112-210 (219)
170 cd07947 DRE_TIM_Re_CS Clostrid 40.9 2.7E+02 0.0058 27.4 10.3 105 163-283 19-131 (279)
171 PRK06801 hypothetical protein; 40.5 1.2E+02 0.0025 30.2 7.7 139 149-315 96-240 (286)
172 TIGR00539 hemN_rel putative ox 40.3 1.2E+02 0.0026 30.4 8.0 42 197-238 137-188 (360)
173 COG0854 PdxJ Pyridoxal phospha 40.3 53 0.0011 31.9 5.0 88 144-246 58-161 (243)
174 PRK09776 putative diguanylate 40.1 6E+02 0.013 28.8 14.2 135 148-305 924-1069(1092)
175 TIGR01037 pyrD_sub1_fam dihydr 39.7 3.6E+02 0.0078 26.1 13.9 66 199-282 223-290 (300)
176 TIGR01163 rpe ribulose-phospha 39.5 2.9E+02 0.0062 24.9 12.3 114 186-312 81-197 (210)
177 PF04131 NanE: Putative N-acet 38.7 80 0.0017 29.8 5.8 115 167-310 53-175 (192)
178 TIGR01502 B_methylAsp_ase meth 38.4 4.1E+02 0.0089 27.8 11.6 104 152-282 229-350 (408)
179 PRK00915 2-isopropylmalate syn 38.1 2.5E+02 0.0054 30.0 10.3 132 160-306 21-167 (513)
180 cd00452 KDPG_aldolase KDPG and 37.8 1.5E+02 0.0033 26.9 7.6 66 162-234 13-80 (190)
181 PRK01130 N-acetylmannosamine-6 37.7 1.4E+02 0.0031 27.6 7.5 108 186-312 90-206 (221)
182 TIGR00259 thylakoid_BtpA membr 37.5 2.1E+02 0.0045 28.2 8.8 78 157-236 16-108 (257)
183 PLN02746 hydroxymethylglutaryl 37.4 2.1E+02 0.0045 29.3 9.1 101 135-241 165-277 (347)
184 cd01573 modD_like ModD; Quinol 37.3 1.1E+02 0.0023 30.1 6.9 83 200-308 172-258 (272)
185 PRK09140 2-dehydro-3-deoxy-6-p 36.5 1.9E+02 0.0041 27.1 8.1 67 162-236 19-90 (206)
186 cd01572 QPRTase Quinolinate ph 36.3 65 0.0014 31.5 5.2 81 198-307 171-253 (268)
187 TIGR00034 aroFGH phospho-2-deh 36.3 1.6E+02 0.0034 30.3 7.9 80 142-222 39-144 (344)
188 PRK14040 oxaloacetate decarbox 36.2 3.2E+02 0.007 30.0 10.9 60 174-235 102-173 (593)
189 TIGR00612 ispG_gcpE 1-hydroxy- 36.2 3.7E+02 0.008 27.7 10.5 146 151-306 19-169 (346)
190 cd07937 DRE_TIM_PC_TC_5S Pyruv 36.2 1.5E+02 0.0033 28.8 7.7 74 162-241 146-228 (275)
191 PRK12331 oxaloacetate decarbox 36.1 3.7E+02 0.0081 28.4 11.0 60 176-235 103-172 (448)
192 PRK11197 lldD L-lactate dehydr 36.1 1.2E+02 0.0026 31.5 7.2 105 193-319 231-340 (381)
193 PRK13307 bifunctional formalde 35.9 1.7E+02 0.0036 30.5 8.3 65 169-237 185-257 (391)
194 cd03313 enolase Enolase: Enola 35.7 5.2E+02 0.011 26.8 13.0 106 149-283 230-359 (408)
195 cd00308 enolase_like Enolase-s 35.5 3.6E+02 0.0079 24.9 12.1 114 139-282 82-198 (229)
196 PRK05692 hydroxymethylglutaryl 35.1 1.1E+02 0.0024 30.1 6.6 98 136-241 124-235 (287)
197 cd04740 DHOD_1B_like Dihydroor 34.4 4.3E+02 0.0094 25.5 12.7 44 198-241 219-264 (296)
198 PRK08898 coproporphyrinogen II 34.2 2.2E+02 0.0048 29.1 8.8 81 150-241 109-212 (394)
199 COG0800 Eda 2-keto-3-deoxy-6-p 34.0 1.1E+02 0.0023 29.4 6.0 99 161-277 21-124 (211)
200 cd07941 DRE_TIM_LeuA3 Desulfob 33.3 3.9E+02 0.0084 25.9 10.0 111 160-285 15-137 (273)
201 cd00739 DHPS DHPS subgroup of 33.2 1.8E+02 0.0038 28.3 7.6 53 164-216 145-205 (257)
202 cd07938 DRE_TIM_HMGL 3-hydroxy 33.1 2.4E+02 0.0053 27.5 8.6 108 160-283 15-130 (274)
203 PRK06512 thiamine-phosphate py 33.0 2E+02 0.0043 27.3 7.7 95 199-312 100-196 (221)
204 TIGR00221 nagA N-acetylglucosa 32.5 1.3E+02 0.0029 30.7 6.9 52 196-247 177-229 (380)
205 COG0157 NadC Nicotinate-nucleo 32.3 35 0.00077 33.9 2.6 96 186-308 159-262 (280)
206 PLN02424 ketopantoate hydroxym 32.3 3.4E+02 0.0073 27.8 9.5 70 137-213 83-155 (332)
207 TIGR03247 glucar-dehydr glucar 32.0 4.8E+02 0.01 27.4 11.0 107 143-282 218-331 (441)
208 PRK08673 3-deoxy-7-phosphohept 31.5 4.3E+02 0.0093 26.9 10.2 82 149-236 91-182 (335)
209 PRK00208 thiG thiazole synthas 31.5 3.5E+02 0.0075 26.7 9.1 38 195-234 163-201 (250)
210 PF06230 DUF1009: Protein of u 31.4 1.9E+02 0.0041 27.7 7.3 66 162-233 132-212 (214)
211 PRK08883 ribulose-phosphate 3- 30.8 1.6E+02 0.0035 27.9 6.7 122 174-313 73-200 (220)
212 TIGR01927 menC_gamma/gm+ o-suc 30.8 5.3E+02 0.011 25.4 11.8 109 143-282 146-259 (307)
213 PLN02274 inosine-5'-monophosph 30.7 2.6E+02 0.0056 30.0 8.9 127 168-313 250-385 (505)
214 TIGR01928 menC_lowGC/arch o-su 30.5 5.4E+02 0.012 25.4 12.3 110 142-283 165-277 (324)
215 cd02803 OYE_like_FMN_family Ol 30.2 4.3E+02 0.0094 25.8 9.9 39 199-237 270-311 (327)
216 PLN02925 4-hydroxy-3-methylbut 30.0 84 0.0018 35.2 5.1 73 134-208 212-291 (733)
217 TIGR01108 oadA oxaloacetate de 29.9 5.2E+02 0.011 28.3 11.2 61 175-235 97-167 (582)
218 PTZ00413 lipoate synthase; Pro 29.8 3E+02 0.0066 28.8 8.9 134 162-310 177-332 (398)
219 PRK12999 pyruvate carboxylase; 29.6 2.8E+02 0.006 32.9 9.6 88 148-241 670-770 (1146)
220 PTZ00450 macrophage migration 29.6 2E+02 0.0044 24.5 6.5 42 151-194 60-102 (113)
221 cd03317 NAAAR N-acylamino acid 29.2 5.8E+02 0.013 25.3 12.1 109 143-283 171-282 (354)
222 PF13361 UvrD_C: UvrD-like hel 29.1 2E+02 0.0044 27.1 7.2 53 168-221 61-113 (351)
223 PRK08599 coproporphyrinogen II 29.0 2.3E+02 0.005 28.5 7.9 76 151-237 88-187 (377)
224 PRK11059 regulatory protein Cs 28.9 7E+02 0.015 26.9 12.0 134 149-305 483-628 (640)
225 PRK11359 cyclic-di-GMP phospho 28.0 8.1E+02 0.017 26.6 12.6 134 151-305 631-773 (799)
226 PRK12344 putative alpha-isopro 27.9 5.4E+02 0.012 27.7 10.8 134 160-308 22-178 (524)
227 cd02911 arch_FMN Archeal FMN-b 27.8 5.3E+02 0.011 24.5 9.7 89 138-241 129-222 (233)
228 PRK06843 inosine 5-monophospha 27.7 1.6E+02 0.0036 30.7 6.6 137 151-312 143-289 (404)
229 cd03174 DRE_TIM_metallolyase D 27.7 2E+02 0.0044 26.8 6.8 40 196-235 115-164 (265)
230 PRK02048 4-hydroxy-3-methylbut 27.6 94 0.002 34.2 5.0 73 133-207 142-221 (611)
231 PRK08649 inosine 5-monophospha 27.6 1E+02 0.0022 31.7 5.1 87 200-307 122-214 (368)
232 PLN02493 probable peroxisomal 27.3 1.7E+02 0.0037 30.2 6.6 105 193-319 210-319 (367)
233 cd07940 DRE_TIM_IPMS 2-isoprop 27.2 5.6E+02 0.012 24.5 10.8 108 161-283 16-130 (268)
234 KOG4201 Anthranilate synthase 26.9 1.7E+02 0.0037 28.6 6.0 20 220-239 94-113 (289)
235 PRK06267 hypothetical protein; 26.8 3E+02 0.0065 27.8 8.2 98 197-306 154-263 (350)
236 PF01187 MIF: Macrophage migra 26.3 1.8E+02 0.004 24.3 5.7 30 163-192 68-98 (114)
237 cd03314 MAL Methylaspartate am 26.1 7.3E+02 0.016 25.5 14.0 105 151-282 192-314 (369)
238 COG4948 L-alanine-DL-glutamate 26.0 6.8E+02 0.015 25.1 10.7 110 142-281 179-291 (372)
239 PRK06559 nicotinate-nucleotide 26.0 45 0.00098 33.3 2.1 94 186-308 168-269 (290)
240 PRK10605 N-ethylmaleimide redu 25.8 5.3E+02 0.011 26.2 9.9 97 135-236 210-320 (362)
241 TIGR01211 ELP3 histone acetylt 25.8 1.5E+02 0.0033 31.9 6.2 86 151-247 194-311 (522)
242 PLN02826 dihydroorotate dehydr 25.7 3.1E+02 0.0068 28.6 8.3 45 198-242 327-375 (409)
243 PRK07534 methionine synthase I 25.6 7.1E+02 0.015 25.2 13.3 87 130-218 83-179 (336)
244 PRK09016 quinolinate phosphori 25.5 45 0.00097 33.4 2.0 94 186-308 180-280 (296)
245 PLN02925 4-hydroxy-3-methylbut 25.1 4.8E+02 0.01 29.5 9.8 74 150-229 94-173 (733)
246 cd00429 RPE Ribulose-5-phospha 25.1 3.3E+02 0.0072 24.3 7.5 113 187-312 83-198 (211)
247 cd02932 OYE_YqiM_FMN Old yello 24.8 4.8E+02 0.01 25.9 9.2 93 137-235 207-318 (336)
248 PRK07807 inosine 5-monophospha 24.6 2.6E+02 0.0057 29.8 7.6 127 167-312 228-363 (479)
249 PRK13523 NADPH dehydrogenase N 24.5 3.2E+02 0.007 27.5 7.9 99 135-235 193-303 (337)
250 PRK02048 4-hydroxy-3-methylbut 24.4 4.2E+02 0.0091 29.4 9.1 85 150-241 25-115 (611)
251 cd07937 DRE_TIM_PC_TC_5S Pyruv 24.3 3.6E+02 0.0077 26.2 8.0 117 162-307 18-168 (275)
252 PRK13561 putative diguanylate 24.1 8.3E+02 0.018 26.2 11.5 133 149-305 485-629 (651)
253 PF02568 ThiI: Thiamine biosyn 24.0 93 0.002 29.2 3.7 59 146-208 134-194 (197)
254 COG0167 PyrD Dihydroorotate de 24.0 7.6E+02 0.016 24.9 11.5 93 146-242 158-275 (310)
255 KOG2335 tRNA-dihydrouridine sy 23.9 6.6E+02 0.014 26.1 9.9 92 136-230 128-226 (358)
256 TIGR00970 leuA_yeast 2-isoprop 23.7 5.8E+02 0.013 27.8 10.1 67 169-235 184-267 (564)
257 cd04734 OYE_like_3_FMN Old yel 23.6 4.5E+02 0.0097 26.4 8.8 28 209-236 285-314 (343)
258 PF00682 HMGL-like: HMGL-like 23.5 5.9E+02 0.013 23.5 9.6 85 151-241 123-217 (237)
259 PRK02615 thiamine-phosphate py 23.4 7.8E+02 0.017 25.1 10.5 137 153-312 173-326 (347)
260 cd02801 DUS_like_FMN Dihydrour 23.4 5.7E+02 0.012 23.3 9.8 38 199-236 172-212 (231)
261 PLN02334 ribulose-phosphate 3- 23.4 4.8E+02 0.01 24.4 8.5 108 186-313 90-207 (229)
262 PRK00694 4-hydroxy-3-methylbut 23.4 1.3E+02 0.0029 33.0 5.1 74 132-207 145-225 (606)
263 PRK09389 (R)-citramalate synth 23.1 5.8E+02 0.013 27.2 9.9 81 151-241 131-222 (488)
264 PRK09875 putative hydrolase; P 23.0 7.5E+02 0.016 24.5 11.9 102 133-240 98-213 (292)
265 PRK09282 pyruvate carboxylase 22.8 7.5E+02 0.016 27.1 10.8 61 175-235 102-172 (592)
266 PRK07259 dihydroorotate dehydr 22.7 7.1E+02 0.015 24.1 13.7 44 198-241 222-267 (301)
267 cd04728 ThiG Thiazole synthase 22.5 5.7E+02 0.012 25.1 8.8 38 195-234 163-201 (248)
268 TIGR03151 enACPred_II putative 22.4 94 0.002 30.9 3.6 82 197-307 52-135 (307)
269 PRK11170 nagA N-acetylglucosam 22.3 2.5E+02 0.0054 28.7 6.8 52 196-247 175-227 (382)
270 PTZ00397 macrophage migration 22.3 2E+02 0.0043 24.0 5.1 32 162-193 69-101 (116)
271 PRK06978 nicotinate-nucleotide 22.3 60 0.0013 32.5 2.2 93 186-308 177-277 (294)
272 PRK12756 phospho-2-dehydro-3-d 22.2 2.9E+02 0.0062 28.5 7.0 39 142-180 43-81 (348)
273 PF11823 DUF3343: Protein of u 21.9 1.4E+02 0.0031 23.0 3.9 36 186-223 2-37 (73)
274 PRK00694 4-hydroxy-3-methylbut 21.8 8.7E+02 0.019 26.9 10.8 85 150-241 29-119 (606)
275 TIGR00973 leuA_bact 2-isopropy 21.7 8.9E+02 0.019 25.8 10.9 133 160-307 18-165 (494)
276 PRK06106 nicotinate-nucleotide 21.6 1.6E+02 0.0035 29.3 5.0 66 216-309 200-267 (281)
277 PRK08185 hypothetical protein; 21.5 5.4E+02 0.012 25.5 8.7 140 149-312 90-232 (283)
278 PRK06543 nicotinate-nucleotide 21.4 67 0.0014 31.9 2.3 94 186-308 160-265 (281)
279 cd04736 MDH_FMN Mandelate dehy 21.4 3.4E+02 0.0074 28.0 7.4 103 194-320 223-330 (361)
280 PRK00278 trpC indole-3-glycero 21.2 3E+02 0.0065 26.6 6.7 67 216-308 119-187 (260)
281 COG0635 HemN Coproporphyrinoge 21.2 7E+02 0.015 25.9 9.9 149 120-282 93-267 (416)
282 PRK11320 prpB 2-methylisocitra 21.1 8.3E+02 0.018 24.3 13.5 123 148-303 149-278 (292)
283 COG1850 RbcL Ribulose 1,5-bisp 20.9 1.7E+02 0.0038 30.7 5.2 58 149-214 220-279 (429)
284 COG3958 Transketolase, C-termi 20.8 91 0.002 31.5 3.1 34 194-227 203-240 (312)
285 cd07942 DRE_TIM_LeuA Mycobacte 20.6 8.3E+02 0.018 24.1 10.0 108 160-282 18-135 (284)
286 PRK14041 oxaloacetate decarbox 20.4 6.3E+02 0.014 26.9 9.4 59 175-235 101-171 (467)
287 PRK14057 epimerase; Provisiona 20.3 1.3E+02 0.0028 29.5 4.0 129 172-312 88-225 (254)
288 PRK05458 guanosine 5'-monophos 20.2 3.5E+02 0.0076 27.5 7.1 126 167-312 98-234 (326)
No 1
>KOG2772 consensus Transaldolase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=3.7e-77 Score=570.33 Aligned_cols=287 Identities=38% Similarity=0.576 Sum_probs=265.4
Q ss_pred cCHHHHHhcc-CceeccCcchhhhhccCCCCCccChHHHHHHhcCChHHHHHHHHHHHhhhhhccccChhhhhhhhhhhh
Q 017271 58 STELDAVSSF-SEIVPDTVVFDDFERFPPTAATVSSSLLLGICSLPDTIFRNAVDMALADSSCCELENSELRLSCFFNKA 136 (374)
Q Consensus 58 ~t~Ld~Lk~~-t~IvaDt~d~~~i~~~~p~daTTNPsLi~~a~~~P~ti~~~aI~~ai~~~~~~~l~~~d~~~a~~~~~~ 136 (374)
.+.|++|++. |++++|++||..|.+|+|+|+|||||||+++.+.|. |..+++.+++|++..+. ....++..++++.
T Consensus 13 ~ssL~qLk~~~t~vvadtgDf~~i~~~~p~daTtnpSlil~as~~~~--y~~~~~~aveygk~~~~-~~~e~v~~aidr~ 89 (337)
T KOG2772|consen 13 RSSLEQLKASGTVVVADTGDFLAIIEYKPQDATTNPSLILAASKMPA--YAELFDTAVEYGKKHGS-SYWEQVENAIDRA 89 (337)
T ss_pred HhhHHHHHhccCeeecCccchHHHHhcCCCCCccCHHHHHhhhccHh--HHHHHHHHHHHHHHhcc-chHHHHHHHHHHH
Confidence 4779999999 889999999999999999999999999999999997 99999999999997753 5667888999999
Q ss_pred HHHHHHHHhcCCCCeEEEEecCCccCCHHHHHHHHHHHHHHhcCCCCCCCcEEEEecCChhHHHHHHHHHHcCceeEEee
Q 017271 137 LVNVGGDLAKMVPGRVSTEVDARLAYDTHGIIRKVHDLLKLYSEIDVPPERLLFKIPSTWQGIEASRLLESEGIQTHLTF 216 (374)
Q Consensus 137 ~v~~g~eil~~v~G~VS~EVdp~la~D~e~~I~eA~~L~~l~~~~gv~~~nVlIKIPaT~eGi~A~~~L~~eGI~vN~Tl 216 (374)
+++||.+|++++|||||+||||||++|+++||++|+.|+++|++.||+++||+||||+||+||+|+|+|+++||+||+||
T Consensus 90 ~v~fg~dilk~vpGrVStEVdaRLsfDTq~tvekA~~Likly~~~gv~k~rvliKI~sTwegI~Aar~le~~GIhcnmTl 169 (337)
T KOG2772|consen 90 CVLFGTDILKGVPGRVSTEVDARLSFDTQGTVEKARHLIKLYNEEGVPKERVLIKIASTWEGIQAARELEEEGIHCNMTL 169 (337)
T ss_pred HHHhChhhhhcCCCeeeeeecccccccchhHHHHHHHHHHHHHhcCCChheEEEecccccchhHHHHHHHhcCceeeeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHcCCcEEEechhhhhhhhhcCCCCccchhhhccCCCcHHHHHHHHHHHHHHcCccHHHHHhccCChhcH
Q 017271 217 VYSFAQAAAAAQAGASVIQIFVGRLRDWARNHSGDPEIDDALKRGEDPALSLVSKAYNYIHKYGHKSKLMAAAVRNKQDL 296 (374)
Q Consensus 217 IFS~~QA~aaa~AGas~ISpFVGRIdd~~~~~~~d~~~~~~~~~~~d~Gv~~v~~iy~~~k~~g~~T~vLaAS~Rn~~~i 296 (374)
+||+.||++|++||+++||||||||+||++++.+++ .++.++|||+.++++||+||++|||+|+||+|||||.+++
T Consensus 170 lFSfaQAVacAea~vtliSpFVgRi~dw~~~~t~~k----a~~~~~dpgV~sv~~iYnyykKfgykt~Vm~asfrn~~ei 245 (337)
T KOG2772|consen 170 LFSFAQAVACAEAGVTLISPFVGRILDWYKANTGQK----AYKAREDPGVASVKKIYNYYKKFGYKTLVMAASFRNTGEI 245 (337)
T ss_pred hHHHHHHHHHHhcCCeeehhHHHHHHHHHHhccCch----hccccCCchHHHHHHHHHHHHHhhHHHHHHHHHhhchhhh
Confidence 999999999999999999999999999999988753 5667789999999999999999999999999999999999
Q ss_pred HHhhCCcEecccHHHHHHHHhCCCCC-cchhhhcccCChhhhccCCCCHHHhcccccc
Q 017271 297 FSLLGVDYIIAPLKVLQSLKESAISP-DEKYSFVRRLSPQSAAMYNFTEEEVCVFSNF 353 (374)
Q Consensus 297 ~~laG~D~lTipp~ll~~L~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 353 (374)
..++|||++|+||.+|++|.+...++ .+.+++.+++.+. .+.++++||.-+|+..
T Consensus 246 k~lag~D~ltisp~ll~~l~~s~~~~~~~l~a~~ak~~~~--~k~~y~de~~fr~~ln 301 (337)
T KOG2772|consen 246 KNLAGVDYLTISPALLPQLVNSTEDQPLELSASHAKLKDL--EKVSYSDEEGFRWDLN 301 (337)
T ss_pred hhcccCceeeecHHHHHHHhhCCCccchhhhhhhhhccCc--ccccccchhhhHhhhh
Confidence 99999999999999999998876653 5667777777665 4455577777788653
No 2
>PTZ00411 transaldolase-like protein; Provisional
Probab=100.00 E-value=2.8e-75 Score=574.86 Aligned_cols=281 Identities=36% Similarity=0.616 Sum_probs=254.2
Q ss_pred ccCHHHHHhccCceeccCcchhhhhccCCCCCccChHHHHHHhcCChHHHHHHHHHHHhhhhhccc---------cChhh
Q 017271 57 LSTELDAVSSFSEIVPDTVVFDDFERFPPTAATVSSSLLLGICSLPDTIFRNAVDMALADSSCCEL---------ENSEL 127 (374)
Q Consensus 57 ~~t~Ld~Lk~~t~IvaDt~d~~~i~~~~p~daTTNPsLi~~a~~~P~ti~~~aI~~ai~~~~~~~l---------~~~d~ 127 (374)
|+|+||+||++|+||+||||++.|++|+|+|+||||||++++.++|+ |+++|++++.|+++... .+...
T Consensus 1 m~~~L~~L~~~t~vv~Dt~d~~~i~~~~p~daTtNPslil~a~~~~~--y~~li~~a~~~~~~~~~~~~~~l~~~~~~~~ 78 (333)
T PTZ00411 1 MPNQLEALKEHTTVVADTGDFSLLKKFQPEDATTNPSLVLAAAQMPE--YAHLIDDAIKYAKANVSRLRDPLLSDEEKEE 78 (333)
T ss_pred CCCHHHHhhCCeEEecCCCCHHHHHhcCCCCCCCCHHHHHHHhcChH--HHHHHHHHHHHHhhccccccchhccccChhH
Confidence 67999999999999999999999999999999999999999999998 99999999999876542 14556
Q ss_pred hhhhhhhhhHHHHHHHHhcCCCCeEEEEecCCccCCHHHHHHHHHHHHHHhcCCCCCCCcEEEEecCChhHHHHHHHHHH
Q 017271 128 RLSCFFNKALVNVGGDLAKMVPGRVSTEVDARLAYDTHGIIRKVHDLLKLYSEIDVPPERLLFKIPSTWQGIEASRLLES 207 (374)
Q Consensus 128 ~~a~~~~~~~v~~g~eil~~v~G~VS~EVdp~la~D~e~~I~eA~~L~~l~~~~gv~~~nVlIKIPaT~eGi~A~~~L~~ 207 (374)
++.+++|+..++||.++++.++|+||+||||++++|+++|+++|++|+++|++.||+++||+||||+||+||+|+++|++
T Consensus 79 ~~~~a~d~l~v~~g~~i~~~i~G~VS~EVd~~ls~d~e~~i~~A~~l~~l~~~~gi~~~rilIKIPaT~eGi~Aa~~L~~ 158 (333)
T PTZ00411 79 LVELVVDKLTVNFGVEILKIVPGRVSTEVDARLSFDKQAMVDKARKIIKMYEEAGISKDRILIKLASTWEGIQAAKALEK 158 (333)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCEEEEEccccccCHHHHHHHHHHHHHhhhhhcCCCCcEEEEeCCCHHHHHHHHHHHH
Confidence 78899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCceeEEeecCCHHHHHHHHHcCCcEEEechhhhhhhhhcCCCCccchhhhccCCCcHHHHHHHHHHHHHHcCccHHHHH
Q 017271 208 EGIQTHLTFVYSFAQAAAAAQAGASVIQIFVGRLRDWARNHSGDPEIDDALKRGEDPALSLVSKAYNYIHKYGHKSKLMA 287 (374)
Q Consensus 208 eGI~vN~TlIFS~~QA~aaa~AGas~ISpFVGRIdd~~~~~~~d~~~~~~~~~~~d~Gv~~v~~iy~~~k~~g~~T~vLa 287 (374)
+||+||+|+|||+.||++|++||+.|||||||||+||+++..+.. .+....+||+.++++||+||+++|++|+||+
T Consensus 159 eGI~~N~TlvFS~~QA~aaaeAGa~~ISPfVGRi~d~~~~~~~~~----~~~~~~~~Gv~~v~~i~~~~k~~g~~T~Im~ 234 (333)
T PTZ00411 159 EGIHCNLTLLFSFAQAVACAQAGVTLISPFVGRILDWYKKPEKAE----SYVGAQDPGVISVTKIYNYYKKHGYKTIVMG 234 (333)
T ss_pred CCCceeEeEecCHHHHHHHHHcCCCEEEeecchHHHhcccccccc----cccccCCchHHHHHHHHHHHHHcCCCeEEEe
Confidence 999999999999999999999999999999999999997543321 2223357999999999999999999999999
Q ss_pred hccCChhcHHHhhCCcEecccHHHHHHHHhCC-CCCcchhhhcccCChhhhccC-----CCCHHHhccc
Q 017271 288 AAVRNKQDLFSLLGVDYIIAPLKVLQSLKESA-ISPDEKYSFVRRLSPQSAAMY-----NFTEEEVCVF 350 (374)
Q Consensus 288 AS~Rn~~~i~~laG~D~lTipp~ll~~L~~~~-~~~~~~~~~~~~l~~~~~~~~-----~~~~~~~~~~ 350 (374)
|||||++|+.+++|||++|+||+++++|..++ .+ ++++|+++.+... .++|.++ +|
T Consensus 235 ASfRn~~qi~~laG~D~lTi~p~ll~~L~~~~~~~------~~~~l~~~~~~~~~~~~~~~~e~~f-r~ 296 (333)
T PTZ00411 235 ASFRNTGEILELAGCDKLTISPKLLEELANTEDGP------VERKLDPEKLTEDTEKLPELTEKEF-RW 296 (333)
T ss_pred cccCCHHHHHHHHCCCEEeCCHHHHHHHHhCCCcc------cCcccCcccccccccccCCCCHHHH-HH
Confidence 99999999999999999999999999999998 54 5678877654433 3455555 45
No 3
>PRK12346 transaldolase A; Provisional
Probab=100.00 E-value=1e-74 Score=567.09 Aligned_cols=278 Identities=35% Similarity=0.565 Sum_probs=257.0
Q ss_pred CHHHHHhccCceeccCcchhhhhccCCCCCccChHHHHHHhcCChHHHHHHHHHHHhhhhhccccChhhhhhhhhhhhHH
Q 017271 59 TELDAVSSFSEIVPDTVVFDDFERFPPTAATVSSSLLLGICSLPDTIFRNAVDMALADSSCCELENSELRLSCFFNKALV 138 (374)
Q Consensus 59 t~Ld~Lk~~t~IvaDt~d~~~i~~~~p~daTTNPsLi~~a~~~P~ti~~~aI~~ai~~~~~~~l~~~d~~~a~~~~~~~v 138 (374)
|+||+||++|+||+||||++.|++|+|+|+||||||++++.++|. |+++|++++.++++.+. ..+..+.++.|+..+
T Consensus 2 ~~L~~Lk~~t~vv~Dtgd~~~i~~~~p~daTtNPsli~~a~~~~~--y~~li~~ai~~~~~~~~-~~~~~i~~a~D~l~v 78 (316)
T PRK12346 2 NQLDGIKQFTTVVADSGDIESIRHYHPQDATTNPSLLLKAAGLPQ--YQHLIDDAIAWGKKQGG-TQEQQVVAACDKLAV 78 (316)
T ss_pred ChHHHhhCCeEEecCCCCHHHHHhcCCCccccCHHHHHHHhcChh--hHHHHHHHHHHHHhcCC-ChHHHHHHHHHHHHH
Confidence 799999999999999999999999999999999999999999997 99999999999887753 555677889999999
Q ss_pred HHHHHHhcCCCCeEEEEecCCccCCHHHHHHHHHHHHHHhcCCCCCCCcEEEEecCChhHHHHHHHHHHcCceeEEeecC
Q 017271 139 NVGGDLAKMVPGRVSTEVDARLAYDTHGIIRKVHDLLKLYSEIDVPPERLLFKIPSTWQGIEASRLLESEGIQTHLTFVY 218 (374)
Q Consensus 139 ~~g~eil~~v~G~VS~EVdp~la~D~e~~I~eA~~L~~l~~~~gv~~~nVlIKIPaT~eGi~A~~~L~~eGI~vN~TlIF 218 (374)
.||.++++++||+||+|||||+++|+++||++|++|+++|++.||+++|++||||+||+||+|+++|+++||+||+|+||
T Consensus 79 ~~g~ei~~~v~G~Vs~EVdp~la~d~e~~i~~A~~l~~l~~~~gi~~~~i~IKIPaT~eGi~A~~~L~~~GI~~n~TliF 158 (316)
T PRK12346 79 NFGAEILKSVPGRVSTEVDARLSFDREKSIEKARHLVDLYQQQGIDKSRILIKLASTWEGIRAAEELEKEGINCNLTLLF 158 (316)
T ss_pred HHHHHHhcCCCCcEEEEEccccccCHHHHHHHHHHHHHHhhhcCCCCCcEEEEeCCCHHHHHHHHHHHHCCCceeEEEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHcCCcEEEechhhhhhhhhcCCCCccchhhhccCCCcHHHHHHHHHHHHHHcCccHHHHHhccCChhcHHH
Q 017271 219 SFAQAAAAAQAGASVIQIFVGRLRDWARNHSGDPEIDDALKRGEDPALSLVSKAYNYIHKYGHKSKLMAAAVRNKQDLFS 298 (374)
Q Consensus 219 S~~QA~aaa~AGas~ISpFVGRIdd~~~~~~~d~~~~~~~~~~~d~Gv~~v~~iy~~~k~~g~~T~vLaAS~Rn~~~i~~ 298 (374)
|+.||++|++||+.|||||||||+||++++.+.. .+....+||+.++++||+||+++|++|+||+|||||++|+++
T Consensus 159 S~~Qa~~aa~AGa~~ISPfVgRi~d~~~~~~~~~----~~~~~~~~Gv~~v~~i~~~~k~~~~~T~Vm~ASfRn~~qi~a 234 (316)
T PRK12346 159 SFAQARACAEAGVFLISPFVGRIYDWYQARKPMD----PYVVEEDPGVKSVRNIYDYYKQHRYETIVMGASFRRTEQILA 234 (316)
T ss_pred CHHHHHHHHHcCCCEEEecccHHHHhhhhccccc----cccccCCChHHHHHHHHHHHHHcCCCcEEEecccCCHHHHHH
Confidence 9999999999999999999999999998765432 222345899999999999999999999999999999999999
Q ss_pred hhCCcEecccHHHHHHHHhCCCCCcchhhhcccCChhhhcc---CCCCHHHhccc
Q 017271 299 LLGVDYIIAPLKVLQSLKESAISPDEKYSFVRRLSPQSAAM---YNFTEEEVCVF 350 (374)
Q Consensus 299 laG~D~lTipp~ll~~L~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~~~~~~~ 350 (374)
++|||++|+||+++++|..+..+ ++++|+|+.+.. ..++|+++ +|
T Consensus 235 laG~d~lTi~p~ll~~L~~~~~~------~~~~l~~~~~~~~~~~~~~e~~f-r~ 282 (316)
T PRK12346 235 LAGCDRLTISPNLLKELQESESP------VERKLIPSSQTFPRPAPMSEAEF-RW 282 (316)
T ss_pred HhCCCEEeCCHHHHHHHHhcCCC------cccccChhhhcccCCCCCCHHHH-HH
Confidence 99999999999999999998775 468888876443 56788888 67
No 4
>TIGR00874 talAB transaldolase. This family includes the majority of known and predicted transaldolase sequences, including E. coli TalA and TalB. It excluded two other families. The first includes E. coli transaldolase-like protein TalC. The second family includes the putative transaldolases of Helicobacter pylori and Mycobacterium tuberculosis.
Probab=100.00 E-value=7.6e-74 Score=561.41 Aligned_cols=278 Identities=38% Similarity=0.621 Sum_probs=253.9
Q ss_pred CHHHHHhccCceeccCcchhhhhccCCCCCccChHHHHHHhcCChHHHHHHHHHHHhhhhhccccChhhhhhhhhhhhHH
Q 017271 59 TELDAVSSFSEIVPDTVVFDDFERFPPTAATVSSSLLLGICSLPDTIFRNAVDMALADSSCCELENSELRLSCFFNKALV 138 (374)
Q Consensus 59 t~Ld~Lk~~t~IvaDt~d~~~i~~~~p~daTTNPsLi~~a~~~P~ti~~~aI~~ai~~~~~~~l~~~d~~~a~~~~~~~v 138 (374)
|+||+||++|+||+||||++.|++|+|+|+|||||+++++.++|. |+++|++++.|+++.+. .....+.++.|+..+
T Consensus 1 ~~L~~L~~~t~vv~Dtgd~~~I~~~~p~~aTtNPsi~~~A~~~~~--Y~~~i~~~~~~~~~~~~-~~~~~i~~a~D~l~v 77 (317)
T TIGR00874 1 NQLDQLKQFTVVVADTGDIEAIKKYQPQDATTNPSLILAAAQLPK--YAELIDEAVAWGKKQGK-DDAQQVENALDKLAV 77 (317)
T ss_pred ChHHHhhcCeEEEeCCCCHHHHHhCCCCccccCHHHHHHHhCChH--HHHHHHHHHHHhhhcCC-ChHHHHHHHHHHHHH
Confidence 589999999999999999999999999999999999999999987 99999999999887653 445667788999999
Q ss_pred HHHHHHhcCCCCeEEEEecCCccCCHHHHHHHHHHHHHHhcCCCCCCCcEEEEecCChhHHHHHHHHHHcCceeEEeecC
Q 017271 139 NVGGDLAKMVPGRVSTEVDARLAYDTHGIIRKVHDLLKLYSEIDVPPERLLFKIPSTWQGIEASRLLESEGIQTHLTFVY 218 (374)
Q Consensus 139 ~~g~eil~~v~G~VS~EVdp~la~D~e~~I~eA~~L~~l~~~~gv~~~nVlIKIPaT~eGi~A~~~L~~eGI~vN~TlIF 218 (374)
.||+++++.++|+||+|||||+++|+++||++|++|+++|++.||+++||+||||+||+||+|+++|+++||+||+||||
T Consensus 78 ~~g~~i~~~i~G~VS~EVdprls~d~~~~i~~A~~l~~l~~~~gi~~~~v~IKIPaT~eGi~A~~~L~~~GI~vN~TliF 157 (317)
T TIGR00874 78 NFGLEILKIVPGRVSTEVDARLSFDTEATVEKARHLIKLYEDAGVDKKRILIKIASTWEGIRAAEELEKEGIHCNLTLLF 157 (317)
T ss_pred HHHHHHHhcCCCCEEEEEecccccCHHHHHHHHHHHHHHhHhcCCCCCcEEEEeCCCHHHHHHHHHHHHCCCceeeeeec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHcCCcEEEechhhhhhhhhcCCCCccchhhhccCCCcHHHHHHHHHHHHHHcCccHHHHHhccCChhcHHH
Q 017271 219 SFAQAAAAAQAGASVIQIFVGRLRDWARNHSGDPEIDDALKRGEDPALSLVSKAYNYIHKYGHKSKLMAAAVRNKQDLFS 298 (374)
Q Consensus 219 S~~QA~aaa~AGas~ISpFVGRIdd~~~~~~~d~~~~~~~~~~~d~Gv~~v~~iy~~~k~~g~~T~vLaAS~Rn~~~i~~ 298 (374)
|+.||++|++||+.|||||||||+||++++.+.. .+....+||+.++++||+||+++|++|+||+|||||++|+++
T Consensus 158 S~~Qa~aaa~AGa~~ISPFVgRi~dw~~~~~g~~----~~~~~~d~Gv~~v~~i~~~~k~~g~~T~Im~ASfRn~~qv~~ 233 (317)
T TIGR00874 158 SFVQAIACAEAKVTLISPFVGRILDWYKAATGKK----EYSIEEDPGVASVKKIYNYYKKHGYPTEVMGASFRNKEEILA 233 (317)
T ss_pred CHHHHHHHHHcCCCEEEeecchHhHhhhhccCcc----ccccccCchHHHHHHHHHHHHHcCCCcEEEeeccCCHHHHHH
Confidence 9999999999999999999999999998765422 122335799999999999999999999999999999999999
Q ss_pred hhCCcEecccHHHHHHHHhCCCCCcchhhhcccCChhhhcc-----CCCCHHHhccc
Q 017271 299 LLGVDYIIAPLKVLQSLKESAISPDEKYSFVRRLSPQSAAM-----YNFTEEEVCVF 350 (374)
Q Consensus 299 laG~D~lTipp~ll~~L~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~~~~~~~ 350 (374)
++|||++|+||+++++|..+..+ ++++|++..+.. ..++|.++ +|
T Consensus 234 laG~d~~Ti~p~ll~~L~~~~~~------~~~~l~~~~~~~~~~~~~~~~e~~f-r~ 283 (317)
T TIGR00874 234 LAGCDRLTISPALLDELKESTGP------VERKLDPESAKKVDKQPIILDESEF-RF 283 (317)
T ss_pred HHCCCeEeCCHHHHHHHHhCCCC------cCccCCccccccccccCCCCCHHHH-HH
Confidence 99999999999999999998775 467887766533 45677777 45
No 5
>cd00957 Transaldolase_TalAB Transaldolases including both TalA and TalB. The enzyme catalyses the reversible transfer of a dyhydroxyacetone moiety, derived from fructose-6-phosphate to erythrose-4-phosphate yielding sedoheptulose-7-phosphate and glyceraldehyde-3-phosphate. The catalytic mechanism is similar to other class I aldolases. The enzyme is found in the non-oxidative branch of the pentose phosphate pathway and forms a dimer in solution.
Probab=100.00 E-value=1.8e-73 Score=558.42 Aligned_cols=279 Identities=42% Similarity=0.692 Sum_probs=255.0
Q ss_pred CHHHHHhccCceeccCcchhhhhccCCCCCccChHHHHHHhcCChHHHHHHHHHHHhhhhhccccChhhhhhhhhhhhHH
Q 017271 59 TELDAVSSFSEIVPDTVVFDDFERFPPTAATVSSSLLLGICSLPDTIFRNAVDMALADSSCCELENSELRLSCFFNKALV 138 (374)
Q Consensus 59 t~Ld~Lk~~t~IvaDt~d~~~i~~~~p~daTTNPsLi~~a~~~P~ti~~~aI~~ai~~~~~~~l~~~d~~~a~~~~~~~v 138 (374)
|+||+||++|+||+||||++.|++|+|+|+||||||++++.++|. |+++|++++.++++.+. ..+....+..|+..+
T Consensus 1 ~~L~~L~~~t~vv~Dtgdl~~I~~~~p~gaTtNPsli~ka~~~~~--y~~~i~~~~~~~~~~~~-~~~~~~~~~~d~l~v 77 (313)
T cd00957 1 NQLDQLKKFTTIVADTGDFEAIKKFKPQDATTNPSLILAAAKLPE--YNKLVDEAIAYAKKKGG-SDEDQISNALDKLLV 77 (313)
T ss_pred ChHHHhhcCcEEEecCCCHHHHHhcCCCeeeeCHHHHHHHhcCHH--HHHHHHHHHHHhhhcCC-CHHHHHHHHHHHHHH
Confidence 689999999999999999999999999999999999999999987 99999999999988764 667788889999999
Q ss_pred HHHHHHhcCCCCeEEEEecCCccCCHHHHHHHHHHHHHHhcCCCCCCCcEEEEecCChhHHHHHHHHHHcCceeEEeecC
Q 017271 139 NVGGDLAKMVPGRVSTEVDARLAYDTHGIIRKVHDLLKLYSEIDVPPERLLFKIPSTWQGIEASRLLESEGIQTHLTFVY 218 (374)
Q Consensus 139 ~~g~eil~~v~G~VS~EVdp~la~D~e~~I~eA~~L~~l~~~~gv~~~nVlIKIPaT~eGi~A~~~L~~eGI~vN~TlIF 218 (374)
++|+++++.++|+||+|||||+++|+++||++|++|+++|++.||+++|||||||+||+||+|+++|+++||+||+|+||
T Consensus 78 ~~~~~i~~~i~G~Vs~EVdp~la~d~~~~i~~A~~l~~~~~~~gi~~~~i~IKIPaT~eGi~A~~~L~~~GI~vn~TlvF 157 (313)
T cd00957 78 NFGTEILKLIPGRVSTEVDARLSFDTNATIAKARKLIKLYEEAGIDKERILIKIAATWEGIQAAKQLEKEGIHCNLTLLF 157 (313)
T ss_pred HHHHHHHhcCCCCEEEEEecccccCHHHHHHHHHHHHHHhHhcCCCCCcEEEEeCCCHHHHHHHHHHHHCCCceeeeeec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHcCCcEEEechhhhhhhhhcCCCCccchhhhccCCCcHHHHHHHHHHHHHHcCccHHHHHhccCChhcHHH
Q 017271 219 SFAQAAAAAQAGASVIQIFVGRLRDWARNHSGDPEIDDALKRGEDPALSLVSKAYNYIHKYGHKSKLMAAAVRNKQDLFS 298 (374)
Q Consensus 219 S~~QA~aaa~AGas~ISpFVGRIdd~~~~~~~d~~~~~~~~~~~d~Gv~~v~~iy~~~k~~g~~T~vLaAS~Rn~~~i~~ 298 (374)
|+.||++|++||++|||||||||+||++++.+.. .+....|||+.++++||+||+++|++|+||+|||||++|+++
T Consensus 158 S~~Qa~~aa~AGa~~ISPfVgRi~d~~~~~~~~~----~~~~~~d~Gv~~v~~i~~~~~~~~~~T~vmaASfRn~~~v~~ 233 (313)
T cd00957 158 SFAQAVACAEAGVTLISPFVGRILDWYKKHSGDK----AYTAEEDPGVASVKKIYNYYKKFGYKTKVMGASFRNIGQILA 233 (313)
T ss_pred CHHHHHHHHHcCCCEEEeecchHHHhhhhccccc----cCCccCCcHHHHHHHHHHHHHHcCCCcEEEecccCCHHHHHH
Confidence 9999999999999999999999999998765432 223345799999999999999999999999999999999999
Q ss_pred hhCCcEecccHHHHHHHHhCCCCCcchhhhcccCChhhh-----ccCCCCHHHhcccc
Q 017271 299 LLGVDYIIAPLKVLQSLKESAISPDEKYSFVRRLSPQSA-----AMYNFTEEEVCVFS 351 (374)
Q Consensus 299 laG~D~lTipp~ll~~L~~~~~~~~~~~~~~~~l~~~~~-----~~~~~~~~~~~~~~ 351 (374)
++|||++|+||+++++|..++.++ +++|++..+ ....++|+++ +|.
T Consensus 234 laG~d~~Ti~p~ll~~L~~~~~~~------~~~l~~~~~~~~~~~~~~~~e~~f-r~~ 284 (313)
T cd00957 234 LAGCDYLTISPALLEELKNSTAKV------ERKLDPAASKALDIHPNFLDESAF-RWA 284 (313)
T ss_pred HhCCCeEEcCHHHHHHHHhCCCcc------ccccCcccccccccccccCCHHHH-HHH
Confidence 999999999999999999998864 566655432 2355677777 663
No 6
>PRK05269 transaldolase B; Provisional
Probab=100.00 E-value=3.9e-72 Score=550.51 Aligned_cols=266 Identities=37% Similarity=0.626 Sum_probs=245.6
Q ss_pred ccCHHHHHhccCceeccCcchhhhhccCCCCCccChHHHHHHhcCChHHHHHHHHHHHhhhhhccccChhhhhhhhhhhh
Q 017271 57 LSTELDAVSSFSEIVPDTVVFDDFERFPPTAATVSSSLLLGICSLPDTIFRNAVDMALADSSCCELENSELRLSCFFNKA 136 (374)
Q Consensus 57 ~~t~Ld~Lk~~t~IvaDt~d~~~i~~~~p~daTTNPsLi~~a~~~P~ti~~~aI~~ai~~~~~~~l~~~d~~~a~~~~~~ 136 (374)
|+|+||+|+++|+||+||||++.|++|+|+|+||||||++++.+.|. |+++|+.++.++++.+ ......+.++.|+.
T Consensus 1 ~~~~L~~L~~~t~vv~Dtgdl~~i~~~~p~g~TtNPsli~ka~~~~~--Y~~~i~~~~~~~~~~~-~~~~~~i~~a~d~l 77 (318)
T PRK05269 1 MTNKLEQLKQFTTVVADTGDIEAIKKYQPQDATTNPSLILKAAQIPE--YAPLIDDAVAWAKQQS-GDRAQQIDDAIDKL 77 (318)
T ss_pred CCCHHHHHHhCCEEEcCCCCHHHHHhcCCCceeeCHHHHHHHhcCHh--HHHHHHHHHHhhcccc-cchHHHHHHHHHHH
Confidence 67999999999999999999999999999999999999999999987 9999999999877653 45566778899999
Q ss_pred HHHHHHHHhcCCCCeEEEEecCCccCCHHHHHHHHHHHHHHhcCCCCCCCcEEEEecCChhHHHHHHHHHHcCceeEEee
Q 017271 137 LVNVGGDLAKMVPGRVSTEVDARLAYDTHGIIRKVHDLLKLYSEIDVPPERLLFKIPSTWQGIEASRLLESEGIQTHLTF 216 (374)
Q Consensus 137 ~v~~g~eil~~v~G~VS~EVdp~la~D~e~~I~eA~~L~~l~~~~gv~~~nVlIKIPaT~eGi~A~~~L~~eGI~vN~Tl 216 (374)
.++||.+++++++|+||+||||++++|+++||++|++|+++|++.||+++||+||||+||+||+|+++|+++||+||+|+
T Consensus 78 ~v~~g~ei~~~i~G~Vs~EVdp~l~~d~~~~i~~A~~l~~~~~~~gi~~~~v~IKIPaT~eGi~A~~~L~~~GI~vn~Tl 157 (318)
T PRK05269 78 AVNFGLEILKLIPGRVSTEVDARLSFDTEATIAKARKLIALYEEAGISKDRILIKIASTWEGIRAAEQLEKEGINCNLTL 157 (318)
T ss_pred HHHHHHHHHhcCCCCEEEEEecccccCHHHHHHHHHHHHHHhhhcCCCCCcEEEEeCCCHHHHHHHHHHHHcCCceeEeE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHcCCcEEEechhhhhhhhhcCCCCccchhhhccCCCcHHHHHHHHHHHHHHcCccHHHHHhccCChhcH
Q 017271 217 VYSFAQAAAAAQAGASVIQIFVGRLRDWARNHSGDPEIDDALKRGEDPALSLVSKAYNYIHKYGHKSKLMAAAVRNKQDL 296 (374)
Q Consensus 217 IFS~~QA~aaa~AGas~ISpFVGRIdd~~~~~~~d~~~~~~~~~~~d~Gv~~v~~iy~~~k~~g~~T~vLaAS~Rn~~~i 296 (374)
|||+.||++|++||++|||||||||+||++++.+.. .+....+||+.++++||+||+++|++|+||+|||||++|+
T Consensus 158 vFs~~Qa~~aa~AGa~~ISPfVgRi~d~~~~~~~~~----~~~~~~~~Gv~~v~~i~~~~k~~~~~t~im~ASfrn~~~v 233 (318)
T PRK05269 158 LFSFAQARACAEAGVFLISPFVGRILDWYKKNTGKK----EYAPAEDPGVVSVTKIYNYYKKHGYKTVVMGASFRNTGQI 233 (318)
T ss_pred ecCHHHHHHHHHcCCCEEEeeccHHHHHhhhccccc----ccCcCCCcHHHHHHHHHHHHHHcCCCceEEeeccCCHHHH
Confidence 999999999999999999999999999998765422 1222357999999999999999999999999999999999
Q ss_pred HHhhCCcEecccHHHHHHHHhCCCCCcchhhhcccCChh
Q 017271 297 FSLLGVDYIIAPLKVLQSLKESAISPDEKYSFVRRLSPQ 335 (374)
Q Consensus 297 ~~laG~D~lTipp~ll~~L~~~~~~~~~~~~~~~~l~~~ 335 (374)
.+++|||++|+||+++++|..+..++ .++|++.
T Consensus 234 ~~laG~d~vTi~p~ll~~l~~~~~~~------~~~l~~~ 266 (318)
T PRK05269 234 LELAGCDRLTISPALLEELAASEGEL------ERKLSPP 266 (318)
T ss_pred HHHhCCCeEECCHHHHHHHHhcCCCc------cccCCCc
Confidence 99999999999999999999876653 5677653
No 7
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=100.00 E-value=1.8e-71 Score=558.85 Aligned_cols=271 Identities=36% Similarity=0.627 Sum_probs=249.1
Q ss_pred ccCHHHHHhccCceeccCcchhhhhccCCCCCccChHHHHHHhcCChHHHHHHHHHHHhhhhhccc--cChhhhhhhhhh
Q 017271 57 LSTELDAVSSFSEIVPDTVVFDDFERFPPTAATVSSSLLLGICSLPDTIFRNAVDMALADSSCCEL--ENSELRLSCFFN 134 (374)
Q Consensus 57 ~~t~Ld~Lk~~t~IvaDt~d~~~i~~~~p~daTTNPsLi~~a~~~P~ti~~~aI~~ai~~~~~~~l--~~~d~~~a~~~~ 134 (374)
|+|+|++||++|+||+||||++.|++|+|+|+||||||++++.++|. |+++|++++.++++... ...+....++++
T Consensus 2 ~~~~L~~L~~~t~vv~Dtgd~~~i~~~~p~~aTtNPsli~~a~~~~~--y~~~i~~~~~~~~~~~~~~~~~~~~~~~a~d 79 (391)
T PRK12309 2 MASLLEQLRQMTVVVADTGDIQAIEKFTPRDATTNPSLITAAAQMPQ--YQSIVDETLRQARKELGSDAPVEDVVALAFD 79 (391)
T ss_pred ccCHHHHHHcCcEEecCCCCHHHHHhcCCCccccCHHHHHHHhCCHH--HHHHHHHHHHHhhhccccCCCHHHHHHHHHH
Confidence 45899999999999999999999999999999999999999999997 99999999999886522 134556778999
Q ss_pred hhHHHHHHHHhcCCCCeEEEEecCCccCCHHHHHHHHHHHHHHhcCCCCCCCcEEEEecCChhHHHHHHHHHHcCceeEE
Q 017271 135 KALVNVGGDLAKMVPGRVSTEVDARLAYDTHGIIRKVHDLLKLYSEIDVPPERLLFKIPSTWQGIEASRLLESEGIQTHL 214 (374)
Q Consensus 135 ~~~v~~g~eil~~v~G~VS~EVdp~la~D~e~~I~eA~~L~~l~~~~gv~~~nVlIKIPaT~eGi~A~~~L~~eGI~vN~ 214 (374)
+..+++|+++++.++|+||+|||||+++|+++||++|++|+++|++.||+++||+||||+||+||+|+++|+++||+||+
T Consensus 80 ~l~v~~g~~i~~~i~G~Vs~EVdprl~~d~~~~i~~A~~l~~~~~~~gi~~~~v~IKIPaT~eGi~A~~~L~~~GI~~n~ 159 (391)
T PRK12309 80 RLAVAFGLKILKIVPGRVSTEVDARLSYDTEATIAKARKLISLYEDAGISRDRVLIKIASTWEGIKAAEVLEKEGIHCNL 159 (391)
T ss_pred HHHHHHHHHHHhcCCCCEEEEEecccccCHHHHHHHHHHHHHHhhhhcCCCCcEEEEeCCCHHHHHHHHHHHHCCCceee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCCHHHHHHHHHcCCcEEEechhhhhhhhhcCCCCccchhhhccCCCcHHHHHHHHHHHHHHcCccHHHHHhccCChh
Q 017271 215 TFVYSFAQAAAAAQAGASVIQIFVGRLRDWARNHSGDPEIDDALKRGEDPALSLVSKAYNYIHKYGHKSKLMAAAVRNKQ 294 (374)
Q Consensus 215 TlIFS~~QA~aaa~AGas~ISpFVGRIdd~~~~~~~d~~~~~~~~~~~d~Gv~~v~~iy~~~k~~g~~T~vLaAS~Rn~~ 294 (374)
|+|||+.||++|++||+.|||||||||+||++++.+.. .++...|||+.++++||+||+++|++|+||+|||||++
T Consensus 160 TlvFS~~QA~aaaeAGa~~ISPfVgRi~dw~~~~~g~~----~~~~~~dpGv~~v~~i~~~~~~~~~~T~Im~ASfRn~~ 235 (391)
T PRK12309 160 TLLFGFHQAIACAEAGVTLISPFVGRILDWYKKETGRD----SYPGAEDPGVQSVTQIYNYYKKFGYKTEVMGASFRNIG 235 (391)
T ss_pred eeecCHHHHHHHHHcCCCEEEeecchhhhhhhhccCCC----ccccccchHHHHHHHHHHHHHhcCCCcEEEecccCCHH
Confidence 99999999999999999999999999999998865532 23344689999999999999999999999999999999
Q ss_pred cHHHhhCCcEecccHHHHHHHHhCCCCCcchhhhcccCChhhhcc
Q 017271 295 DLFSLLGVDYIIAPLKVLQSLKESAISPDEKYSFVRRLSPQSAAM 339 (374)
Q Consensus 295 ~i~~laG~D~lTipp~ll~~L~~~~~~~~~~~~~~~~l~~~~~~~ 339 (374)
|+++++|||++|+||+++++|.....+ +++.|+|+.+..
T Consensus 236 ~v~~laG~d~~Ti~p~ll~~L~~~~~~------~~~~l~~~~~~~ 274 (391)
T PRK12309 236 EIIELAGCDLLTISPKLLEQLRSTEAE------LPRKLDPANAAG 274 (391)
T ss_pred HHHHHHCCCeeeCCHHHHHHHHhcCCC------cCcccChhhccc
Confidence 999999999999999999999987664 467788766543
No 8
>cd00439 Transaldolase Transaldolase. Enzymes found in the non-oxidative branch of the pentose phosphate pathway, that catalyze the reversible transfer of a dihydroxyacetone group from fructose-6-phosphate to erythrose-4-phosphate yielding sedoheptulose-7-phosphate and glyceraldehyde-3-phosphate. They are members of the class I aldolases, who are characterized by using a Schiff-base mechanism for stabilization of the reaction intermediates.
Probab=100.00 E-value=5e-56 Score=424.47 Aligned_cols=234 Identities=24% Similarity=0.251 Sum_probs=213.2
Q ss_pred eeccCcchhhhhccC----CCCCccChHHHHHHhcCChHHHHHHHHHHHhhhhhccccChhhhhhhhhhhhHHHHHHHHh
Q 017271 70 IVPDTVVFDDFERFP----PTAATVSSSLLLGICSLPDTIFRNAVDMALADSSCCELENSELRLSCFFNKALVNVGGDLA 145 (374)
Q Consensus 70 IvaDt~d~~~i~~~~----p~daTTNPsLi~~a~~~P~ti~~~aI~~ai~~~~~~~l~~~d~~~a~~~~~~~v~~g~eil 145 (374)
+++||+|++.|+++. ++|+||||+++.++...|. |.+.+..++.+..+.. .....++.+..++.++++++++.
T Consensus 2 ~~lDt~d~~~i~~~~~~~~~~GvTTNPsiv~~~~~~~~--~~~~~~~~l~~~~~~~-~~~~~~l~~~~~~~~~~~~~~i~ 78 (252)
T cd00439 2 PWYDTLDRPATDLLPLIRGVRGVTTNPSIIQAAISTSN--AYNDQFRTLVESGKDI-ESAYWELVVKDIQDACKLFEPIY 78 (252)
T ss_pred EEeeCCCHHHHHHhhccCCCCeeccCHHHHHHHhcCch--hhHHHHHHHHHccccc-hhHHHHHHHHHHHHHHHHHHHHH
Confidence 799999999998764 8999999999999999886 8888888888777654 34556788889999999999999
Q ss_pred cCC--CCeEEEEecCCccCCHHHHHHHHHHHHHHhcCCCCCCCcEEEEecCChhHHHHHHHHHHcCceeEEeecCCHHHH
Q 017271 146 KMV--PGRVSTEVDARLAYDTHGIIRKVHDLLKLYSEIDVPPERLLFKIPSTWQGIEASRLLESEGIQTHLTFVYSFAQA 223 (374)
Q Consensus 146 ~~v--~G~VS~EVdp~la~D~e~~I~eA~~L~~l~~~~gv~~~nVlIKIPaT~eGi~A~~~L~~eGI~vN~TlIFS~~QA 223 (374)
+.+ +|+||+||+||+++|+++|+++|++|.+++ +++|++||||+||+|++|+++|+++||+||+|+|||++||
T Consensus 79 ~~~~~~G~Vs~ev~~~~~~d~~~mi~~A~~l~~~~-----~~~nv~IKIPaT~~Gl~A~~~L~~~GI~vn~T~vfs~~Qa 153 (252)
T cd00439 79 DQTEADGRVSVEVSARLADDTQGMVEAAKYLSKVV-----NRRNIYIKIPATAEGIPAIKDLIAAGISVNVTLIFSIAQY 153 (252)
T ss_pred HhhCCCCeEEEEEeccccCCHHHHHHHHHHHHHhc-----CcccEEEEeCCCHHHHHHHHHHHHCCCceeeeeecCHHHH
Confidence 999 999999999999999999999999999996 3479999999999999999999999999999999999999
Q ss_pred HHHHHcCCcEEEechhhhhhhhhcCCCCccchhhhccCCCcHHHHHHHHHHHHHHcCccHHHHHhccCChhcHHHhhCCc
Q 017271 224 AAAAQAGASVIQIFVGRLRDWARNHSGDPEIDDALKRGEDPALSLVSKAYNYIHKYGHKSKLMAAAVRNKQDLFSLLGVD 303 (374)
Q Consensus 224 ~aaa~AGas~ISpFVGRIdd~~~~~~~d~~~~~~~~~~~d~Gv~~v~~iy~~~k~~g~~T~vLaAS~Rn~~~i~~laG~D 303 (374)
.+|++||++||||||||+++|++++..+... +...++|+++++++|++|++++++|++||||+||++++.+++|||
T Consensus 154 ~~aa~Aga~~ispfvgRid~~~~~~~~~~~~----d~~~~~gi~~~~~~~~~~~~~~~~tkiL~AS~r~~~~v~~l~G~d 229 (252)
T cd00439 154 EAVADAGTSVASPFVSRIDTLMDKMLEQIGL----DLRGKAGVAQVTLAYKLYKQKFKKQRVLWASFSDTLYVAPLIGCD 229 (252)
T ss_pred HHHHHcCCCEEEEeccHHHHHhhhhcccccc----ccccCcHHHHHHHHHHHHHHhCCCCeEEEEeeCCHHHHHHhhCCC
Confidence 9999999999999999999999876654322 223468999999999999999999999999999999999999999
Q ss_pred EecccHHHHHHH
Q 017271 304 YIIAPLKVLQSL 315 (374)
Q Consensus 304 ~lTipp~ll~~L 315 (374)
++|+||+++.+|
T Consensus 230 ~vT~~p~v~~~l 241 (252)
T cd00439 230 TVTTMPDQALEA 241 (252)
T ss_pred eeecCHHHHHHH
Confidence 999999999999
No 9
>COG0176 MipB Transaldolase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.3e-56 Score=421.41 Aligned_cols=206 Identities=35% Similarity=0.615 Sum_probs=185.8
Q ss_pred HHHHhccCceeccCcchhhhhccCC----CCCccChHHHHHHhcCChHHHHHHHHHHHhhhhhccccChhhhhhhhhhhh
Q 017271 61 LDAVSSFSEIVPDTVVFDDFERFPP----TAATVSSSLLLGICSLPDTIFRNAVDMALADSSCCELENSELRLSCFFNKA 136 (374)
Q Consensus 61 Ld~Lk~~t~IvaDt~d~~~i~~~~p----~daTTNPsLi~~a~~~P~ti~~~aI~~ai~~~~~~~l~~~d~~~a~~~~~~ 136 (374)
+++|+++.++|.||+|+++|+++.| .|+||||||+.++.++| ++
T Consensus 1 ~~~~~~~~~~~~Dt~d~~eikk~~~~g~v~GvTTNPSli~ka~~~~--------------------------------~~ 48 (239)
T COG0176 1 LDGLSQWMELFLDTADIEEIKKLLPIGPVDGVTTNPSLILKAGAKP--------------------------------RD 48 (239)
T ss_pred CchhhhhHhheecccCHHHHHHhhhcCCcCCcCCCHHHHHhhcccC--------------------------------cc
Confidence 4688999889999999999999988 89999999999998876 36
Q ss_pred HHHHHHHHhcCCCCeEEEEecCCccCCHHHHHHHHHHHHHHhcCCCCCCCcEEEEecCChhHHHHHHHHHHcCceeEEee
Q 017271 137 LVNVGGDLAKMVPGRVSTEVDARLAYDTHGIIRKVHDLLKLYSEIDVPPERLLFKIPSTWQGIEASRLLESEGIQTHLTF 216 (374)
Q Consensus 137 ~v~~g~eil~~v~G~VS~EVdp~la~D~e~~I~eA~~L~~l~~~~gv~~~nVlIKIPaT~eGi~A~~~L~~eGI~vN~Tl 216 (374)
++++++|+++.+||+| .|+|+++++|+|+||++|++|+++++ +.||+||||+||+||+|++.|+++||+||+||
T Consensus 49 ~~~~~~ei~~~v~G~v-~e~~~~ls~d~e~mi~eA~~L~~~~~-----~~~i~IKIP~T~eGl~Ai~~L~~eGI~~NvTL 122 (239)
T COG0176 49 AVEFGKEILKIVPGRV-TEVDEVLSFDAEAMIEEARRLAKLID-----NVGIVIKIPATWEGLKAIKALEAEGIKTNVTL 122 (239)
T ss_pred HHHHHHHHHhcCCCCC-eEeeeeecccHHHHHHHHHHHHHhcC-----cCCeEEEeCCCHHHHHHHHHHHHCCCeeeEEE
Confidence 7889999999999999 99999999999999999999999974 45689999999999999999999999999999
Q ss_pred cCCHHHHHHHHHcCCcEEEechhhhhhhhhcCCCCccchhhhccCCCcHHHHHHHHHHHHHHcCccHHHHHhccCChhcH
Q 017271 217 VYSFAQAAAAAQAGASVIQIFVGRLRDWARNHSGDPEIDDALKRGEDPALSLVSKAYNYIHKYGHKSKLMAAAVRNKQDL 296 (374)
Q Consensus 217 IFS~~QA~aaa~AGas~ISpFVGRIdd~~~~~~~d~~~~~~~~~~~d~Gv~~v~~iy~~~k~~g~~T~vLaAS~Rn~~~i 296 (374)
|||+.||++|++||++|||||||||+||+.. ...||.+++++|++|+.++++ +++||+|++.++
T Consensus 123 iFS~~QAl~aa~aga~~iSpFvgRi~D~~~d--------------~~~~I~~~~~iy~~y~~~~~~--t~vas~~~~~~~ 186 (239)
T COG0176 123 IFSAAQALLAAEAGATYISPFVGRIDDWGID--------------GMLGIAEAREIYDYYKQHGAK--TLVASARFPNHV 186 (239)
T ss_pred EecHHHHHHHHHhCCeEEEeecchHHhhccC--------------chHHHHHHHHHHHHhccccce--EEEecCccHHHH
Confidence 9999999999999999999999999999842 125999999999999998855 566666666665
Q ss_pred H--HhhCCcEecccHHHHHHHHhCCC
Q 017271 297 F--SLLGVDYIIAPLKVLQSLKESAI 320 (374)
Q Consensus 297 ~--~laG~D~lTipp~ll~~L~~~~~ 320 (374)
. +++|||.+|+||+++++|.+++.
T Consensus 187 ~~~~l~G~d~~Tip~~~l~~l~~~~~ 212 (239)
T COG0176 187 YIAALAGADVLTIPPDLLKQLLKHGG 212 (239)
T ss_pred HHHHHhCCCcccCCHHHHHHHHhccc
Confidence 5 59999999999999999999943
No 10
>PRK03343 transaldolase; Validated
Probab=100.00 E-value=8.3e-53 Score=419.54 Aligned_cols=252 Identities=23% Similarity=0.258 Sum_probs=210.9
Q ss_pred CccCHHHHHhccCceeccCcchh-hhhccCCCCCccChHHHHHHh-cCChHHHHHHHHHHHhhhh-----hccccChhhh
Q 017271 56 GLSTELDAVSSFSEIVPDTVVFD-DFERFPPTAATVSSSLLLGIC-SLPDTIFRNAVDMALADSS-----CCELENSELR 128 (374)
Q Consensus 56 ~~~t~Ld~Lk~~t~IvaDt~d~~-~i~~~~p~daTTNPsLi~~a~-~~P~ti~~~aI~~ai~~~~-----~~~l~~~d~~ 128 (374)
|.+-|||.|.+ =+.++|||+ .|.+++|+|+||||+++.++. +.|. |++.|++.+.+++ ++.+...|++
T Consensus 12 g~s~WlD~i~R---~~l~~g~l~~lI~~~g~~GaTsNPsIf~~Ai~~~~~--Y~~~i~~l~~~~~~~~~~~~~La~~di~ 86 (368)
T PRK03343 12 GQSIWLDDLSR---DRLTSGNLARLIDEKGVVGVTSNPAIFQKAIAGGDA--YDAQIAELAAAGADVEEAYEELTTADVR 86 (368)
T ss_pred CcEEeecCCcc---ccccCcCHHHHHHhCCCCeeccCHHHHHHHHhCCHH--HHHHHHHHHHhcCChhHHHHHHHHHHHH
Confidence 34455555554 455679998 678899999999999999998 5565 9999999886543 3445578889
Q ss_pred hhhhhhhhHHHHHHHHhcCCCCeEEEEecCCccCCHHHHHHHHHHHHHHhcCCCCCCCcEEEEecCChhHHHHHHHHHHc
Q 017271 129 LSCFFNKALVNVGGDLAKMVPGRVSTEVDARLAYDTHGIIRKVHDLLKLYSEIDVPPERLLFKIPSTWQGIEASRLLESE 208 (374)
Q Consensus 129 ~a~~~~~~~v~~g~eil~~v~G~VS~EVdp~la~D~e~~I~eA~~L~~l~~~~gv~~~nVlIKIPaT~eGi~A~~~L~~e 208 (374)
.+|++..+.+ +++++++|+||+||||++++|+++||++|++|+++ ++++|||||||+||+||+||++|+++
T Consensus 87 ~AaD~L~p~~----e~~~g~~G~VS~EVdp~la~d~e~~i~eA~~L~~~-----~~~~nv~IKIPaT~~Gi~Ai~~L~~~ 157 (368)
T PRK03343 87 NACDVLRPVY----EATGGVDGRVSIEVSPRLAHDTEATIAEARRLWAA-----VDRPNLMIKIPATPEGLPAIEALIAE 157 (368)
T ss_pred HHHHHHHHHH----HHhCCCCCeEEEEeccccccCHHHHHHHHHHHHHh-----cCCCCEEEEeCCCHHHHHHHHHHHHC
Confidence 9999999999 89999999999999999999999999999999998 67899999999999999999999999
Q ss_pred CceeEEeecCCHHHHHHHHHc-----------CC------cEEEechhhhhhhhhcCCCCccchhhhccCCCcHHHHHHH
Q 017271 209 GIQTHLTFVYSFAQAAAAAQA-----------GA------SVIQIFVGRLRDWARNHSGDPEIDDALKRGEDPALSLVSK 271 (374)
Q Consensus 209 GI~vN~TlIFS~~QA~aaa~A-----------Ga------s~ISpFVGRIdd~~~~~~~d~~~~~~~~~~~d~Gv~~v~~ 271 (374)
||+||+|+|||+.||.+|++| |. +||||||||||.+.++.......+.......++||.++++
T Consensus 158 GI~vn~TliFS~~Qa~a~~eA~~~Gl~~~~~~G~~~~~~~sviS~FVsRiD~~~d~~l~~~~~~~~~~l~g~~gVa~ak~ 237 (368)
T PRK03343 158 GISVNVTLIFSVERYRAVADAYLRGLEKRLAAGHDLSKIHSVASFFVSRVDTEVDKRLEAIGTDEALALRGKAAIANARL 237 (368)
T ss_pred CCceeEeeecCHHHHHHHHHHHHHHHHHHHHcCCCcccCCeEEEeehhhhHhhhhhhhhhcCcchhhhhcCCHHHHHHHH
Confidence 999999999999999999998 75 8999999999665554322111111111124799999999
Q ss_pred HHHHHHHcC----c----------------cHHHHHhccCChhcHHHhhCCcEe-cccHHHHHHHHhCCCC
Q 017271 272 AYNYIHKYG----H----------------KSKLMAAAVRNKQDLFSLLGVDYI-IAPLKVLQSLKESAIS 321 (374)
Q Consensus 272 iy~~~k~~g----~----------------~T~vLaAS~Rn~~~i~~laG~D~l-Tipp~ll~~L~~~~~~ 321 (374)
+|++|++++ + .|.+|++|+|+..++.+|+|||.+ |+||++|+++.+++..
T Consensus 238 ~Y~~~~~~~~~~~~~~l~~~ga~~qr~LwAsT~vk~~~~~~~~yV~~L~G~dtvnT~p~~tl~a~~~~g~~ 308 (368)
T PRK03343 238 AYQAYEEVFASPRWAALAAAGARPQRPLWASTGTKNPAYSDTLYVDELVAPDTVNTMPEATLDAFADHGEV 308 (368)
T ss_pred HHHHHHHhcCcchhHHHHhcCCcccccceeccccCCCccCccccHHHccCCCccCCCCHHHHHHHHhcCCc
Confidence 999999976 4 566677777999999999999999 9999999999987663
No 11
>PF00923 Transaldolase: Transaldolase; InterPro: IPR001585 Transaldolase (2.2.1.2 from EC) catalyses the reversible transfer of a three-carbon ketol unit from sedoheptulose 7-phosphate to glyceraldehyde 3-phosphate to form erythrose 4-phosphate and fructose 6-phosphate. This enzyme, together with transketolase, provides a link between the glycolytic and pentose-phosphate pathways. Transaldolase is an enzyme of about 34 kDa whose sequence has been well conserved throughout evolution. A lysine has been implicated [] in the catalytic mechanism of the enzyme; it acts as a nucleophilic group that attacks the carbonyl group of fructose-6-phosphate.; GO: 0005975 carbohydrate metabolic process; PDB: 3R5E_A 1F05_A 1I2P_A 1UCW_A 1ONR_A 1I2O_B 3KOF_A 3CWN_B 1I2N_A 1I2Q_A ....
Probab=100.00 E-value=7.5e-53 Score=408.63 Aligned_cols=232 Identities=35% Similarity=0.557 Sum_probs=201.5
Q ss_pred eeccCcchhhhhccCC----CCCccChHHHHHHhcCChHHHHHHHHHHHhhhhhccccChhhhhhhhhhhhHHHHHHHHh
Q 017271 70 IVPDTVVFDDFERFPP----TAATVSSSLLLGICSLPDTIFRNAVDMALADSSCCELENSELRLSCFFNKALVNVGGDLA 145 (374)
Q Consensus 70 IvaDt~d~~~i~~~~p----~daTTNPsLi~~a~~~P~ti~~~aI~~ai~~~~~~~l~~~d~~~a~~~~~~~v~~g~eil 145 (374)
|++||+|++.|+++.+ .|.||||+++.++..+. +.|+..|......+ ....+..++..++++.+++
T Consensus 1 i~~Dsad~~~i~~~~~~~~~~GvTTNPsii~~a~~~~-~~~~~~i~~l~~~~---------~~~~~~~~~l~~~~~~~~~ 70 (287)
T PF00923_consen 1 IWLDSADRDEIKELLPNGGIDGVTTNPSIIAKALSGS-EAYDEAIKELAKQG---------KSWEEIYDKLAVEDGREAL 70 (287)
T ss_dssp EEEESSSHHHHHHHHHTTTESEEEE-HHHHHHHHTGH-HHHHHHHHHHHHHS---------HHHHHHHHHHHHHHHHHHH
T ss_pred CCccCCCHHHHHHHhhccccCCCccCHHHHHHHHccc-ccHHHHHHHHHHhc---------ccHHHHHHHHHHHHHHHHH
Confidence 6899999999999866 89999999999987733 34666665543322 4466778999999999999
Q ss_pred cCC--CCeEEEEecCCccCCHHHHHHHHHHHHHHhcCCCCCCCcEEEEecCChhHHHHHHHHHHcCceeEEeecCCHHHH
Q 017271 146 KMV--PGRVSTEVDARLAYDTHGIIRKVHDLLKLYSEIDVPPERLLFKIPSTWQGIEASRLLESEGIQTHLTFVYSFAQA 223 (374)
Q Consensus 146 ~~v--~G~VS~EVdp~la~D~e~~I~eA~~L~~l~~~~gv~~~nVlIKIPaT~eGi~A~~~L~~eGI~vN~TlIFS~~QA 223 (374)
+.+ +|+||+||+|++++|+++|+++|++|+++++ ++||+||||+||+||+|+++|+++||+||+|+|||+.||
T Consensus 71 ~~lg~~G~vsvqv~p~~~~d~e~~i~~A~~l~~~~~-----r~~v~IKIPaT~~Gi~A~~~L~~~GI~vn~T~vfs~~Qa 145 (287)
T PF00923_consen 71 DLLGKDGPVSVQVDPRLAYDAEEMIEEARRLHALFE-----RPNVVIKIPATEEGIKAIKELEAEGIPVNATLVFSVEQA 145 (287)
T ss_dssp CCHTSSSEEEEE-SGGGTTSHHHHHHHHHHHHHHHH-----GGTEEEEEESSHHHHHHHHHHHHTT-EEEEEEE-SHHHH
T ss_pred HhcCCCceEEEecCCccccCHHHHHHHHHHHHHhcc-----ccCeeEECCCCHHHHHHHHHHhhCCceEEEEecccHHHH
Confidence 999 9999999999999999999999999999985 689999999999999999999999999999999999999
Q ss_pred HHHHHcCCcEEEechhhhhhhhhcCCCCccchhhhccCCCcHHHHHHHHHHHHHHcCccHHHHHhccCChhcHHHhhCCc
Q 017271 224 AAAAQAGASVIQIFVGRLRDWARNHSGDPEIDDALKRGEDPALSLVSKAYNYIHKYGHKSKLMAAAVRNKQDLFSLLGVD 303 (374)
Q Consensus 224 ~aaa~AGas~ISpFVGRIdd~~~~~~~d~~~~~~~~~~~d~Gv~~v~~iy~~~k~~g~~T~vLaAS~Rn~~~i~~laG~D 303 (374)
.+|++||++||||||||+++|+++.... .-..+.++|+.+++++|++|++++++|++|+||+|+++++.+++|||
T Consensus 146 ~~aa~AGa~~isp~vgRld~~~~~~~~~-----~~~~~~~~g~~~~~~~~~~~~~~~~~t~v~~as~r~~~~v~~l~G~d 220 (287)
T PF00923_consen 146 IAAAQAGASYISPYVGRLDDWGKRLQGE-----DALKGEHDGVALAKEIYQYYRKYGYKTKVLAASFRNVQQVLALAGAD 220 (287)
T ss_dssp HHHHHTT-SEEEEBHHHHHHHHHHHSCC-----HHCGGGSHHHHHHHHHHHHHHHHTESSEEEEBSSSSHHHHHHTTTSS
T ss_pred HHHHhcccceEeeeHHHHHHHhhhhccc-----ccccccccHHHHHHHHHHHHHHhCCCcceeccCcCCHHHHHHHHCCC
Confidence 9999999999999999999999543322 11123368999999999999999999999999999999999999999
Q ss_pred EecccHHHHHHHHhCCCC
Q 017271 304 YIIAPLKVLQSLKESAIS 321 (374)
Q Consensus 304 ~lTipp~ll~~L~~~~~~ 321 (374)
++|+||+++++|.+++.+
T Consensus 221 ~vTip~~~l~~l~~~~~~ 238 (287)
T PF00923_consen 221 IVTIPPKVLEALLEHPLT 238 (287)
T ss_dssp EEEEEHHHHHHHHHHHHH
T ss_pred eEECCHHHHHHHHhCCCh
Confidence 999999999999998774
No 12
>cd00955 Transaldolase_like Transaldolase-like proteins from plants and bacteria. Transaldolase is found in the non-oxidative branch of the pentose phosphate pathway, that catalyze the reversible transfer of a dihydroxyacetone group from fructose-6-phosphate to erythrose-4-phosphate yielding sedoheptulose-7-phosphate and glyceraldehyde-3-phosphate. They are members of the class I aldolases, who are characterized by using a Schiff-base mechanism for stabilization of the reaction intermediates.
Probab=100.00 E-value=1.4e-51 Score=407.07 Aligned_cols=246 Identities=23% Similarity=0.258 Sum_probs=213.6
Q ss_pred CHHHHHhccCceeccCcchhhh-hccCCCCCccChHHHHHHhcC-ChHHHHHHHHHHHhhhh-----hccccChhhhhhh
Q 017271 59 TELDAVSSFSEIVPDTVVFDDF-ERFPPTAATVSSSLLLGICSL-PDTIFRNAVDMALADSS-----CCELENSELRLSC 131 (374)
Q Consensus 59 t~Ld~Lk~~t~IvaDt~d~~~i-~~~~p~daTTNPsLi~~a~~~-P~ti~~~aI~~ai~~~~-----~~~l~~~d~~~a~ 131 (374)
-|||.|.+ =+.|+|+++.| .+++|+|+||||+++.++.++ |. |++.|++.+.++. ++.+...+++.+|
T Consensus 2 ~WlD~i~R---~~l~~g~l~~li~~~~~~g~TsNPsi~~~Ai~~~~~--y~~~i~~~~~~~~~~~~~~~~l~~~di~~a~ 76 (338)
T cd00955 2 LWLDNLSR---SFIDNGFLKRLIEEQGVVGVTSNPAIFEKAIAGSAA--YDDQIRALKGQGLDAEAIYEALAIEDIQDAC 76 (338)
T ss_pred CCcccCch---hhccccCHHHHHHhCCCceeccCHHHHHHHHhCCHH--HHHHHHHHHHhcCChhHHHHHHHHHHHHHHH
Confidence 58999987 78999999999 899999999999999999998 55 9999999887643 3334567888898
Q ss_pred hhhhhHHHHHHHHhcCCCCeEEEEecCCccCCHHHHHHHHHHHHHHhcCCCCCCCcEEEEecCChhHHHHHHHHHHcCce
Q 017271 132 FFNKALVNVGGDLAKMVPGRVSTEVDARLAYDTHGIIRKVHDLLKLYSEIDVPPERLLFKIPSTWQGIEASRLLESEGIQ 211 (374)
Q Consensus 132 ~~~~~~v~~g~eil~~v~G~VS~EVdp~la~D~e~~I~eA~~L~~l~~~~gv~~~nVlIKIPaT~eGi~A~~~L~~eGI~ 211 (374)
+...+.+ +++++++|+||+||||++++|+++||++|++|+++ ++++|+|||||+||+||+|+++|+++||+
T Consensus 77 d~l~p~~----~~~~g~~G~Vs~EVdP~la~d~~~~i~~A~~L~~~-----i~~~nv~IKIPaT~~Gi~Ai~~L~~~GI~ 147 (338)
T cd00955 77 DLLAPVY----EQTGGNDGYVSLEVSPRLADDTQGTIAEAKRLWKA-----VGRPNLMIKIPATEAGLPAIEELIAAGIS 147 (338)
T ss_pred HHHHHHH----hhcCCCCCeEEEEecccccCCHHHHHHHHHHHHHh-----cCCCcEEEEeCCCHHHHHHHHHHHHCCCc
Confidence 8888888 68999999999999999999999999999999887 67899999999999999999999999999
Q ss_pred eEEeecCCHHHHHHHHHc---C--------------CcEEEechhhhhhhhhcCCCCccchhhhccCCCcHHHHHHHHHH
Q 017271 212 THLTFVYSFAQAAAAAQA---G--------------ASVIQIFVGRLRDWARNHSGDPEIDDALKRGEDPALSLVSKAYN 274 (374)
Q Consensus 212 vN~TlIFS~~QA~aaa~A---G--------------as~ISpFVGRIdd~~~~~~~d~~~~~~~~~~~d~Gv~~v~~iy~ 274 (374)
||+|+|||+.||.+|++| | .+||||||||||.+.++...+ ........++||++++++|+
T Consensus 148 vn~TliFs~~Qa~~aa~A~~~Gl~~~~~~g~~~~~~~sv~S~FVsRiD~~~d~~l~~---~~~~~~~g~~gIa~ak~~Y~ 224 (338)
T cd00955 148 VNVTLIFSLEQYEAVAEAYLRGLERRVEGGGDLSQVASVASFFVSRVDTLIDKKLDA---PEAKALQGKVAIANAKLAYQ 224 (338)
T ss_pred eeEeeecCHHHHHHHHHHHHhhHHHHHhcCCCcccCceEEEEecchhhHhhhccccc---ccccccccCHHHHHHHHHHH
Confidence 999999999999999998 3 389999999997766654321 00111224799999999999
Q ss_pred HHHHcCc--------------------cHHHHHhccCChhcHHHhhCCcEe-cccHHHHHHHHhCCCC
Q 017271 275 YIHKYGH--------------------KSKLMAAAVRNKQDLFSLLGVDYI-IAPLKVLQSLKESAIS 321 (374)
Q Consensus 275 ~~k~~g~--------------------~T~vLaAS~Rn~~~i~~laG~D~l-Tipp~ll~~L~~~~~~ 321 (374)
+|+++++ .|.+|.+++|+...+.+|+|||.+ |+|+.+++.+.+++..
T Consensus 225 ~~~~~~~~~~~~~l~~~ga~~qr~LwASTgvk~~~~~~~~yV~~LiG~dtvnt~P~~t~~a~~~~g~~ 292 (338)
T cd00955 225 EYQEKFSGPRWAALAAAGAKPQRLLWASTGVKNPAYPDVLYVEELIGPDTVNTMPDATLKAFADHGEV 292 (338)
T ss_pred HHHHHCCchhhHHHHhcCCcccccceecccccCCccCCcccHHhccCCCcccCCHHHHHHHHHhcCCc
Confidence 9999886 677888888899999999999999 7899999998888763
No 13
>TIGR00875 fsa_talC_mipB fructose-6-phosphate aldolase, TalC/MipB family. This model represents a family that includes the E. coli transaldolase homologs TalC and MipB, both shown to be fructose-6-phosphate aldolases rather than transaldolases as previously thought. It is related to but distinct from the transaldolase family of E. coli TalA and TalB. The member from Bacillus subtilis becomes phosphorylated during early stationary phase but not during exponential growth.
Probab=100.00 E-value=2.3e-51 Score=383.79 Aligned_cols=198 Identities=29% Similarity=0.470 Sum_probs=178.8
Q ss_pred ceeccCcchhhhhccCC----CCCccChHHHHHHhcCChHHHHHHHHHHHhhhhhccccChhhhhhhhhhhhHHHHHHHH
Q 017271 69 EIVPDTVVFDDFERFPP----TAATVSSSLLLGICSLPDTIFRNAVDMALADSSCCELENSELRLSCFFNKALVNVGGDL 144 (374)
Q Consensus 69 ~IvaDt~d~~~i~~~~p----~daTTNPsLi~~a~~~P~ti~~~aI~~ai~~~~~~~l~~~d~~~a~~~~~~~v~~g~ei 144 (374)
+++.||+|+++|+++.+ .|.||||+||.+...+ +..+.+++
T Consensus 2 k~~lDsAd~~~i~~~~~~~~i~GvTTNPsll~k~g~~-----------------------------------~~~~~~~i 46 (213)
T TIGR00875 2 KFFLDTANVEEIKKAAELGILAGVTTNPSLIAKEGRS-----------------------------------FWEVLKEI 46 (213)
T ss_pred eEEEcCCCHHHHHHHHhcCCcceEeCCHHHHHhcCCC-----------------------------------HHHHHHHH
Confidence 38999999999998744 5899999999876442 23355677
Q ss_pred hcCCCCeEEEEecCCccCCHHHHHHHHHHHHHHhcCCCCCCCcEEEEecCChhHHHHHHHHHHcCceeEEeecCCHHHHH
Q 017271 145 AKMVPGRVSTEVDARLAYDTHGIIRKVHDLLKLYSEIDVPPERLLFKIPSTWQGIEASRLLESEGIQTHLTFVYSFAQAA 224 (374)
Q Consensus 145 l~~v~G~VS~EVdp~la~D~e~~I~eA~~L~~l~~~~gv~~~nVlIKIPaT~eGi~A~~~L~~eGI~vN~TlIFS~~QA~ 224 (374)
++.++|+||+|| +++|+++|+++|++|.+++ +|++||||+||+|++|+++|+++||+||+|+|||++||.
T Consensus 47 ~~~~~g~vs~qv---~~~~~~~mi~~a~~l~~~~-------~~i~iKIP~T~~Gl~A~~~L~~~Gi~v~~T~vfs~~Qa~ 116 (213)
T TIGR00875 47 QEAVEGPVSAET---ISLDAEGMVEEAKELAKLA-------PNIVVKIPMTSEGLKAVKILKKEGIKTNVTLVFSAAQAL 116 (213)
T ss_pred HHhcCCcEEEEE---eeCCHHHHHHHHHHHHHhC-------CCeEEEeCCCHHHHHHHHHHHHCCCceeEEEecCHHHHH
Confidence 778899999999 7899999999999999996 799999999999999999999999999999999999999
Q ss_pred HHHHcCCcEEEechhhhhhhhhcCCCCccchhhhccCCCcHHHHHHHHHHHHHHcCccHHHHHhccCChhcHHH--hhCC
Q 017271 225 AAAQAGASVIQIFVGRLRDWARNHSGDPEIDDALKRGEDPALSLVSKAYNYIHKYGHKSKLMAAAVRNKQDLFS--LLGV 302 (374)
Q Consensus 225 aaa~AGas~ISpFVGRIdd~~~~~~~d~~~~~~~~~~~d~Gv~~v~~iy~~~k~~g~~T~vLaAS~Rn~~~i~~--laG~ 302 (374)
+|++||+.||||||||++||+ ++|+..+++++++|+++|++|+||+|||||++|+++ ++||
T Consensus 117 ~Aa~aGa~yispyvgRi~d~g-----------------~dg~~~v~~~~~~~~~~~~~tkIlaAS~r~~~~v~~~~~~G~ 179 (213)
T TIGR00875 117 LAAKAGATYVSPFVGRLDDIG-----------------GDGMKLIEEVKTIFENHAPDTEVIAASVRHPRHVLEAALIGA 179 (213)
T ss_pred HHHHcCCCEEEeecchHHHcC-----------------CCHHHHHHHHHHHHHHcCCCCEEEEeccCCHHHHHHHHHcCC
Confidence 999999999999999999985 369999999999999999999999999999999997 7999
Q ss_pred cEecccHHHHHHHHhCCCCCcchhhh
Q 017271 303 DYIIAPLKVLQSLKESAISPDEKYSF 328 (374)
Q Consensus 303 D~lTipp~ll~~L~~~~~~~~~~~~~ 328 (374)
|++|+||+++++|.+++++...+..|
T Consensus 180 d~vTip~~vl~~l~~~p~t~~~~~~F 205 (213)
T TIGR00875 180 DIATMPLDVMQQLFNHPLTDIGLERF 205 (213)
T ss_pred CEEEcCHHHHHHHHcCCchHHHHHHH
Confidence 99999999999999998875444444
No 14
>PRK01362 putative translaldolase; Provisional
Probab=100.00 E-value=6.6e-51 Score=380.89 Aligned_cols=198 Identities=30% Similarity=0.461 Sum_probs=179.6
Q ss_pred ceeccCcchhhhhccCC----CCCccChHHHHHHhcCChHHHHHHHHHHHhhhhhccccChhhhhhhhhhhhHHHHHHHH
Q 017271 69 EIVPDTVVFDDFERFPP----TAATVSSSLLLGICSLPDTIFRNAVDMALADSSCCELENSELRLSCFFNKALVNVGGDL 144 (374)
Q Consensus 69 ~IvaDt~d~~~i~~~~p----~daTTNPsLi~~a~~~P~ti~~~aI~~ai~~~~~~~l~~~d~~~a~~~~~~~v~~g~ei 144 (374)
.++.||+|+++|+++.+ .|.||||+||.+...+ +.++.+++
T Consensus 2 ~~~lDsA~~~ei~~~~~~~~i~GvTTNPsll~k~g~~-----------------------------------~~~~~~~i 46 (214)
T PRK01362 2 KFFIDTANVEEIKEANELGVLDGVTTNPSLIAKEGRD-----------------------------------FEEVIKEI 46 (214)
T ss_pred EEEEecCCHHHHHHHHhCCCcceEcCCHHHHHhcCCC-----------------------------------HHHHHHHH
Confidence 48999999999998744 5999999999986432 23455677
Q ss_pred hcCCCCeEEEEecCCccCCHHHHHHHHHHHHHHhcCCCCCCCcEEEEecCChhHHHHHHHHHHcCceeEEeecCCHHHHH
Q 017271 145 AKMVPGRVSTEVDARLAYDTHGIIRKVHDLLKLYSEIDVPPERLLFKIPSTWQGIEASRLLESEGIQTHLTFVYSFAQAA 224 (374)
Q Consensus 145 l~~v~G~VS~EVdp~la~D~e~~I~eA~~L~~l~~~~gv~~~nVlIKIPaT~eGi~A~~~L~~eGI~vN~TlIFS~~QA~ 224 (374)
++.++|+||+||+ ++|+++|+++|++|.+++ +|++||||+||+|++|+++|+++||+||+|+|||+.||.
T Consensus 47 ~~~i~g~vs~qv~---~~d~~~m~~~a~~l~~~~-------~~i~iKIP~T~~G~~a~~~L~~~Gi~v~~T~vfs~~Qa~ 116 (214)
T PRK01362 47 CSIVDGPVSAEVI---ALDAEGMIKEGRELAKIA-------PNVVVKIPMTPEGLKAVKALSKEGIKTNVTLIFSANQAL 116 (214)
T ss_pred HHhcCCCEEEEEe---eCCHHHHHHHHHHHHHhC-------CCEEEEeCCCHHHHHHHHHHHHCCCceEEeeecCHHHHH
Confidence 8888999999995 799999999999999996 799999999999999999999999999999999999999
Q ss_pred HHHHcCCcEEEechhhhhhhhhcCCCCccchhhhccCCCcHHHHHHHHHHHHHHcCccHHHHHhccCChhcHHH--hhCC
Q 017271 225 AAAQAGASVIQIFVGRLRDWARNHSGDPEIDDALKRGEDPALSLVSKAYNYIHKYGHKSKLMAAAVRNKQDLFS--LLGV 302 (374)
Q Consensus 225 aaa~AGas~ISpFVGRIdd~~~~~~~d~~~~~~~~~~~d~Gv~~v~~iy~~~k~~g~~T~vLaAS~Rn~~~i~~--laG~ 302 (374)
+|++||+.||||||||++||+ ++|+..+++++++++++|++|+||+|||||++|+++ ++||
T Consensus 117 ~Aa~aGa~yispyvgRi~d~g-----------------~dg~~~i~~~~~~~~~~~~~tkilaAS~r~~~~v~~~~~~G~ 179 (214)
T PRK01362 117 LAAKAGATYVSPFVGRLDDIG-----------------TDGMELIEDIREIYDNYGFDTEIIAASVRHPMHVLEAALAGA 179 (214)
T ss_pred HHHhcCCcEEEeecchHhhcC-----------------CCHHHHHHHHHHHHHHcCCCcEEEEeecCCHHHHHHHHHcCC
Confidence 999999999999999999985 369999999999999999999999999999999998 7899
Q ss_pred cEecccHHHHHHHHhCCCCCcchhhh
Q 017271 303 DYIIAPLKVLQSLKESAISPDEKYSF 328 (374)
Q Consensus 303 D~lTipp~ll~~L~~~~~~~~~~~~~ 328 (374)
|++|+||+++++|.+++++...+..|
T Consensus 180 d~iTi~~~vl~~l~~~p~t~~~~~~F 205 (214)
T PRK01362 180 DIATIPYKVIKQLFKHPLTDKGLEKF 205 (214)
T ss_pred CEEecCHHHHHHHHcCCchHHHHHHH
Confidence 99999999999999999975544444
No 15
>PRK12655 fructose-6-phosphate aldolase; Reviewed
Probab=100.00 E-value=4.8e-49 Score=369.68 Aligned_cols=198 Identities=26% Similarity=0.343 Sum_probs=175.8
Q ss_pred ceeccCcchhhhhcc---CC-CCCccChHHHHHHhcCChHHHHHHHHHHHhhhhhccccChhhhhhhhhhhhHHHHHHHH
Q 017271 69 EIVPDTVVFDDFERF---PP-TAATVSSSLLLGICSLPDTIFRNAVDMALADSSCCELENSELRLSCFFNKALVNVGGDL 144 (374)
Q Consensus 69 ~IvaDt~d~~~i~~~---~p-~daTTNPsLi~~a~~~P~ti~~~aI~~ai~~~~~~~l~~~d~~~a~~~~~~~v~~g~ei 144 (374)
.++.||+|+++|+++ .| .|.|||||||.+...++ ..+.++|
T Consensus 2 ~~flDtA~~~~i~~~~~~~~i~GvTTNPsll~k~g~~~-----------------------------------~~~~~~i 46 (220)
T PRK12655 2 ELYLDTANVAEVERLARIFPIAGVTTNPSIIAASKESI-----------------------------------WEVLPRL 46 (220)
T ss_pred EEEEecCCHHHHHHHHhCCCccEEeCCHHHHHhcCCCH-----------------------------------HHHHHHH
Confidence 389999999999876 33 69999999999875532 1222455
Q ss_pred hcCC--CCeEEEEecCCccCCHHHHHHHHHHHHHHhcCCCCCCCcEEEEecCChhHHHHHHHHHHcCceeEEeecCCHHH
Q 017271 145 AKMV--PGRVSTEVDARLAYDTHGIIRKVHDLLKLYSEIDVPPERLLFKIPSTWQGIEASRLLESEGIQTHLTFVYSFAQ 222 (374)
Q Consensus 145 l~~v--~G~VS~EVdp~la~D~e~~I~eA~~L~~l~~~~gv~~~nVlIKIPaT~eGi~A~~~L~~eGI~vN~TlIFS~~Q 222 (374)
++.+ .|+||+|| ++.|.++|+++|++|.+++ +|++||||+||+|++||++|+++||+||+|+|||+.|
T Consensus 47 ~~~~~~~~~v~~qv---~~~d~e~mi~eA~~l~~~~-------~nv~IKIP~T~~Gl~Ai~~L~~~GI~vn~T~vfs~~Q 116 (220)
T PRK12655 47 QKAIGGEGILFAQT---MSRDAQGMVEEAKRLRNAI-------PGIVVKIPVTAEGLAAIKKLKKEGIPTLGTAVYSAAQ 116 (220)
T ss_pred HHHhCCCCCEEEEE---eeCCHHHHHHHHHHHHHhC-------CCEEEEeCCCHHHHHHHHHHHHCCCceeEeEecCHHH
Confidence 5555 58999999 8899999999999999985 7999999999999999999999999999999999999
Q ss_pred HHHHHHcCCcEEEechhhhhhhhhcCCCCccchhhhccCCCcHHHHHHHHHHHHHHcCccHHHHHhccCChhcHHH--hh
Q 017271 223 AAAAAQAGASVIQIFVGRLRDWARNHSGDPEIDDALKRGEDPALSLVSKAYNYIHKYGHKSKLMAAAVRNKQDLFS--LL 300 (374)
Q Consensus 223 A~aaa~AGas~ISpFVGRIdd~~~~~~~d~~~~~~~~~~~d~Gv~~v~~iy~~~k~~g~~T~vLaAS~Rn~~~i~~--la 300 (374)
|++|++||+.||||||||++|.+ .+|+..+++++++++.++++|++|+|||||++|+.+ ++
T Consensus 117 a~~Aa~aGa~yIspyvgR~~~~g-----------------~dg~~~i~~~~~~~~~~~~~tkILaAS~r~~~~v~~~~~~ 179 (220)
T PRK12655 117 GLLAALAGAKYVAPYVNRVDAQG-----------------GDGIRMVQELQTLLEMHAPESMVLAASFKTPRQALDCLLA 179 (220)
T ss_pred HHHHHHcCCeEEEeecchHhHcC-----------------CCHHHHHHHHHHHHHhcCCCcEEEEEecCCHHHHHHHHHc
Confidence 99999999999999999999853 269999999999999999999999999999999998 79
Q ss_pred CCcEecccHHHHHHHHhCCCCCcchhhh
Q 017271 301 GVDYIIAPLKVLQSLKESAISPDEKYSF 328 (374)
Q Consensus 301 G~D~lTipp~ll~~L~~~~~~~~~~~~~ 328 (374)
|||++|+||+++++|.++|.+...+..|
T Consensus 180 G~d~vTip~~vl~~l~~~p~t~~~~~~F 207 (220)
T PRK12655 180 GCQSITLPLDVAQQMLNTPAVESAIEKF 207 (220)
T ss_pred CCCEEECCHHHHHHHHcCCChHHHHHHH
Confidence 9999999999999999999975544444
No 16
>PRK12653 fructose-6-phosphate aldolase; Reviewed
Probab=100.00 E-value=6.1e-49 Score=368.99 Aligned_cols=198 Identities=23% Similarity=0.326 Sum_probs=175.2
Q ss_pred ceeccCcchhhhhccCC----CCCccChHHHHHHhcCChHHHHHHHHHHHhhhhhccccChhhhhhhhhhhhHHHHHHHH
Q 017271 69 EIVPDTVVFDDFERFPP----TAATVSSSLLLGICSLPDTIFRNAVDMALADSSCCELENSELRLSCFFNKALVNVGGDL 144 (374)
Q Consensus 69 ~IvaDt~d~~~i~~~~p----~daTTNPsLi~~a~~~P~ti~~~aI~~ai~~~~~~~l~~~d~~~a~~~~~~~v~~g~ei 144 (374)
.++.||+|+++|+++.+ .|.||||+||.+...++. .+.+++
T Consensus 2 k~flDtA~~~~i~~~~~~~~i~GvTTNPsll~k~g~~~~-----------------------------------~~~~~i 46 (220)
T PRK12653 2 ELYLDTSDVVAVKALSRIFPLAGVTTNPSIIAAGKKPLE-----------------------------------VVLPQL 46 (220)
T ss_pred EEEEecCCHHHHHHHHhCCCccEEeCCHHHHHhcCCCHH-----------------------------------HHHHHH
Confidence 38999999999988633 589999999998755431 122355
Q ss_pred hcCCC--CeEEEEecCCccCCHHHHHHHHHHHHHHhcCCCCCCCcEEEEecCChhHHHHHHHHHHcCceeEEeecCCHHH
Q 017271 145 AKMVP--GRVSTEVDARLAYDTHGIIRKVHDLLKLYSEIDVPPERLLFKIPSTWQGIEASRLLESEGIQTHLTFVYSFAQ 222 (374)
Q Consensus 145 l~~v~--G~VS~EVdp~la~D~e~~I~eA~~L~~l~~~~gv~~~nVlIKIPaT~eGi~A~~~L~~eGI~vN~TlIFS~~Q 222 (374)
++.++ |+||+|| +++|+++|+++|++|.+++ +|++||||+||+|++||+.|+++||+||+|+|||+.|
T Consensus 47 ~~~~~~~~~v~~Qv---~~~d~e~mi~ea~~l~~~~-------~ni~IKIP~T~~Gl~A~~~L~~~GI~vn~T~vfs~~Q 116 (220)
T PRK12653 47 HEAMGGQGRLFAQV---MATTAEGMVNDARKLRSII-------ADIVVKVPVTAEGLAAIKMLKAEGIPTLGTAVYGAAQ 116 (220)
T ss_pred HHHhCCCCcEEEEE---ecCCHHHHHHHHHHHHHhC-------CCEEEEeCCCHHHHHHHHHHHHcCCCeeEEEecCHHH
Confidence 55553 6999999 7899999999999999985 7999999999999999999999999999999999999
Q ss_pred HHHHHHcCCcEEEechhhhhhhhhcCCCCccchhhhccCCCcHHHHHHHHHHHHHHcCccHHHHHhccCChhcHHH--hh
Q 017271 223 AAAAAQAGASVIQIFVGRLRDWARNHSGDPEIDDALKRGEDPALSLVSKAYNYIHKYGHKSKLMAAAVRNKQDLFS--LL 300 (374)
Q Consensus 223 A~aaa~AGas~ISpFVGRIdd~~~~~~~d~~~~~~~~~~~d~Gv~~v~~iy~~~k~~g~~T~vLaAS~Rn~~~i~~--la 300 (374)
|.+|++||+.||||||||++|++ .+|+..+++++++|++++++|++|+||+||++|+.+ ++
T Consensus 117 a~~Aa~aGa~yIspyvgR~~~~g-----------------~dg~~~i~~i~~~~~~~~~~tkILaAS~r~~~~v~~~~~~ 179 (220)
T PRK12653 117 GLLSALAGAEYVAPYVNRIDAQG-----------------GSGIQTVTDLQQLLKMHAPQAKVLAASFKTPRQALDCLLA 179 (220)
T ss_pred HHHHHhcCCcEEEeecChHhhcC-----------------CChHHHHHHHHHHHHhcCCCcEEEEEecCCHHHHHHHHHc
Confidence 99999999999999999999864 369999999999999999999999999999999998 79
Q ss_pred CCcEecccHHHHHHHHhCCCCCcchhhh
Q 017271 301 GVDYIIAPLKVLQSLKESAISPDEKYSF 328 (374)
Q Consensus 301 G~D~lTipp~ll~~L~~~~~~~~~~~~~ 328 (374)
|||++|+||+++++|.+++.+...+..|
T Consensus 180 G~d~vTip~~vl~~l~~~p~t~~~~~~F 207 (220)
T PRK12653 180 GCESITLPLDVAQQMISYPAVDAAVAKF 207 (220)
T ss_pred CCCEEECCHHHHHHHHcCCchHHHHHHH
Confidence 9999999999999999999875444444
No 17
>PRK12656 fructose-6-phosphate aldolase; Reviewed
Probab=100.00 E-value=8.2e-49 Score=368.41 Aligned_cols=200 Identities=19% Similarity=0.309 Sum_probs=176.1
Q ss_pred ceeccCcchhhhhccCC----CCCccChHHHHHHhcCChHHHHHHHHHHHhhhhhccccChhhhhhhhhhhhHHHHHHHH
Q 017271 69 EIVPDTVVFDDFERFPP----TAATVSSSLLLGICSLPDTIFRNAVDMALADSSCCELENSELRLSCFFNKALVNVGGDL 144 (374)
Q Consensus 69 ~IvaDt~d~~~i~~~~p----~daTTNPsLi~~a~~~P~ti~~~aI~~ai~~~~~~~l~~~d~~~a~~~~~~~v~~g~ei 144 (374)
.++.||+|+++|+++.+ .|.|||||||.+.... ++..+.+++
T Consensus 2 ~~flDtAd~~~i~~~~~~~~i~GvTTNPsll~k~g~~----------------------------------~~~~~~~~i 47 (222)
T PRK12656 2 EFMLDTLNLEAIKKWHEILPLAGVTSNPSIAKKEGDI----------------------------------DFFERIREV 47 (222)
T ss_pred EEEEecCCHHHHHHHHhcCCcceEeCCHHHHHhcCCC----------------------------------CHHHHHHHH
Confidence 37999999999998733 5999999999986432 223444577
Q ss_pred hcCCC--CeEEEEecCCccCCHHHHHHHHHHHHHHhcCCCCCCCcEEEEecCChhHHHHHHHHHHcCceeEEeecCCHHH
Q 017271 145 AKMVP--GRVSTEVDARLAYDTHGIIRKVHDLLKLYSEIDVPPERLLFKIPSTWQGIEASRLLESEGIQTHLTFVYSFAQ 222 (374)
Q Consensus 145 l~~v~--G~VS~EVdp~la~D~e~~I~eA~~L~~l~~~~gv~~~nVlIKIPaT~eGi~A~~~L~~eGI~vN~TlIFS~~Q 222 (374)
++.++ ++||+|| +++|.++|+++|++|.+.. .+|++||||+|++|++|+++|+++||+||+|+|||++|
T Consensus 48 ~~~i~~~~~vs~ev---~~~~~~~mi~eA~~l~~~~------~~nv~VKIP~T~~Gl~Ai~~L~~~Gi~vn~T~ifs~~Q 118 (222)
T PRK12656 48 REIIGDEASIHVQV---VAQDYEGILKDAHEIRRQC------GDDVYIKVPVTPAGLAAIKTLKAEGYHITATAIYTVFQ 118 (222)
T ss_pred HHHhCCCCcEEEEE---EECCHHHHHHHHHHHHHHh------CCCEEEEeCCCHHHHHHHHHHHHCCCceEEeeeCCHHH
Confidence 77774 5899999 8999999999999998754 38999999999999999999999999999999999999
Q ss_pred HHHHHHcCCcEEEechhhhhhhhhcCCCCccchhhhccCCCcHHHHHHHHHHHHHHcCccHHHHHhccCChhcHHH--hh
Q 017271 223 AAAAAQAGASVIQIFVGRLRDWARNHSGDPEIDDALKRGEDPALSLVSKAYNYIHKYGHKSKLMAAAVRNKQDLFS--LL 300 (374)
Q Consensus 223 A~aaa~AGas~ISpFVGRIdd~~~~~~~d~~~~~~~~~~~d~Gv~~v~~iy~~~k~~g~~T~vLaAS~Rn~~~i~~--la 300 (374)
|++|+++|+.||||||||++|.+ .+|+..++++.+.|++++++|+|||||+||++|+++ ++
T Consensus 119 a~~Aa~aGa~yvsPyvgRi~d~g-----------------~D~~~~i~~i~~~~~~~~~~tkILaAS~r~~~~v~~a~~~ 181 (222)
T PRK12656 119 GLLAIEAGADYLAPYYNRMENLN-----------------IDSNAVIGQLAEAIDRENSDSKILAASFKNVAQVNKAFAL 181 (222)
T ss_pred HHHHHHCCCCEEecccchhhhcC-----------------CCHHHHHHHHHHHHHhcCCCCEEEEEecCCHHHHHHHHHc
Confidence 99999999999999999999864 248899999999999999999999999999999998 58
Q ss_pred CCcEecccHHHHHHHHhCCCCCcchhhh
Q 017271 301 GVDYIIAPLKVLQSLKESAISPDEKYSF 328 (374)
Q Consensus 301 G~D~lTipp~ll~~L~~~~~~~~~~~~~ 328 (374)
|||++|+||+++++|.+|+.+...++.|
T Consensus 182 G~d~vTvp~~vl~~l~~~p~t~~~~~~F 209 (222)
T PRK12656 182 GAQAVTAGPDVFEAAFAMPSIQKAVDDF 209 (222)
T ss_pred CCCEEecCHHHHHHHhcCCcHHHHHHHH
Confidence 9999999999999999999875444444
No 18
>TIGR00876 tal_mycobact transaldolase, mycobacterial type. This model describes one of three related but easily separable famiiles of known and putative transaldolases. This family and the family typified by E. coli TalA and TalB both contain experimentally verified examples.
Probab=100.00 E-value=2.8e-46 Score=369.57 Aligned_cols=253 Identities=21% Similarity=0.229 Sum_probs=213.3
Q ss_pred CccCHHHHHhccCceeccCcch-hhhhccCCCCCccChHHHHHHhcCChHHHHHHHHHHHhh-----hhhccccChhhhh
Q 017271 56 GLSTELDAVSSFSEIVPDTVVF-DDFERFPPTAATVSSSLLLGICSLPDTIFRNAVDMALAD-----SSCCELENSELRL 129 (374)
Q Consensus 56 ~~~t~Ld~Lk~~t~IvaDt~d~-~~i~~~~p~daTTNPsLi~~a~~~P~ti~~~aI~~ai~~-----~~~~~l~~~d~~~ 129 (374)
|.+-|||.|.+ =+.++||| +.|+++.|+|+||||+++.++.+++ ..|+..|++.... +.++.+...+++.
T Consensus 2 G~S~WlD~i~R---~~l~~G~l~~lI~~~~~~G~TsNPsif~~Ai~~~-~~Y~~~i~~l~~~g~~~~~~~~~La~~di~~ 77 (350)
T TIGR00876 2 EFSLWCDDIER---DFLENGDFLELIDKGAICGATSNPSIFCEAISEG-AFYDAEIAELAAKGADADAIIETLALDDILQ 77 (350)
T ss_pred CeeeeecCCCh---hhhcCCCHHHHHHhCCCCcccCCHHHHHHHHhCC-HHHHHHHHHHHhcCCCHHHHHHHHhHHHHHH
Confidence 67789999988 78899999 7788999999999999999999988 6799999876543 2344456778899
Q ss_pred hhhhhhhHHHHHHHHhcCCCCeEEEEecCCccCCHHHHHHHHHHHHHHhcCCCCCCCcEEEEecCChhHHHHHHHHHHcC
Q 017271 130 SCFFNKALVNVGGDLAKMVPGRVSTEVDARLAYDTHGIIRKVHDLLKLYSEIDVPPERLLFKIPSTWQGIEASRLLESEG 209 (374)
Q Consensus 130 a~~~~~~~v~~g~eil~~v~G~VS~EVdp~la~D~e~~I~eA~~L~~l~~~~gv~~~nVlIKIPaT~eGi~A~~~L~~eG 209 (374)
+|++..+.+ +++++++|+||+||||++++|+++|+++|++|+++ ++++|+|||||+||+||+|+++|+++|
T Consensus 78 A~D~L~p~~----e~~~g~~G~VS~EVdP~la~d~e~~i~eA~~L~~~-----~~~~nv~IKIPaT~~Gi~Ai~~L~~~G 148 (350)
T TIGR00876 78 ACDALMPLW----EDSDGNDGRISIEIDPFLADDAAKSIDEAIELFKI-----LDRPNLFIKIPASEAGIEAISALLAAG 148 (350)
T ss_pred HHHHHHHHH----HHhCCCCCcEEEEEccccccCHHHHHHHHHHHHHh-----hCCCCEEEEeCCCHHHHHHHHHHHHCC
Confidence 999999999 89999999999999999999999999999999998 568999999999999999999999999
Q ss_pred ceeEEeecCCHHHHHHHHHc-----------C------CcEEEechhhhhhhhhcCCCCccchhhhccCCCcHHHHHHHH
Q 017271 210 IQTHLTFVYSFAQAAAAAQA-----------G------ASVIQIFVGRLRDWARNHSGDPEIDDALKRGEDPALSLVSKA 272 (374)
Q Consensus 210 I~vN~TlIFS~~QA~aaa~A-----------G------as~ISpFVGRIdd~~~~~~~d~~~~~~~~~~~d~Gv~~v~~i 272 (374)
|+||+|+|||++|+.+|++| | .+|+|+||||+|.+.|+.............-.+.||++++.+
T Consensus 149 I~vNvTliFS~~q~~~v~eA~~~Gl~~~~~~G~~~~~v~sVaS~FvsRvD~~vD~~l~~~~~~~a~~l~g~~gIanA~l~ 228 (350)
T TIGR00876 149 IPVNVTLIFSPKIAGEIADALAKEAEKARQAGHSLSKIHAVASFFVSRFDKEIDKLLDKIGSRQALELQAQAGIANARLA 228 (350)
T ss_pred CceeEEEeecHHHHHHHHHHHHHHHHHHHHcCCCcccCceEEEEeeehhhhhhhhhhhhccchhHHHHhhhHHHHHHHHH
Confidence 99999999999999999876 3 489999999999998765432111111111235799999999
Q ss_pred HHHHHH-c--CccHHHHHhccCChhcHH------------------HhhCCcEe-cccHHHHHHHHhCCCC
Q 017271 273 YNYIHK-Y--GHKSKLMAAAVRNKQDLF------------------SLLGVDYI-IAPLKVLQSLKESAIS 321 (374)
Q Consensus 273 y~~~k~-~--g~~T~vLaAS~Rn~~~i~------------------~laG~D~l-Tipp~ll~~L~~~~~~ 321 (374)
|+.|++ + +..|+.|.+...++|+.+ +|+|.+.+ |+|++.++++.+|+..
T Consensus 229 y~~~~e~~~~~~~~~~L~~~ga~~qR~LwASTgvK~p~~~d~~YV~~Ligp~tVnT~P~~Tl~Af~dhg~~ 299 (350)
T TIGR00876 229 YATYREVFEDSDCYRQIKQDAAKLQRPLFASTGVKNNDLADDLYIKALCAKHSINTAPEEAIDAVADDGNI 299 (350)
T ss_pred HHHHHHHhccCHHHHHHHHCCCCCCceeeecCCCCCCcccccccHHHhcCCCccccCCHHHHHHHHHcCCc
Confidence 998886 3 567777776666666664 58999998 9999999999998763
No 19
>cd00956 Transaldolase_FSA Transaldolase-like fructose-6-phosphate aldolases (FSA) found in bacteria and archaea, which are member of the MipB/TalC subfamily of class I aldolases. FSA catalyze an aldol cleavage of fructose 6-phosphate and do not utilize fructose, fructose 1-phosphate, fructose 1,6-phosphate, or dihydroxyacetone phosphate. The enzymes belong to the transaldolase family that serves in transfer reactions in the pentose phosphate cycle, and are more distantly related to fructose 1,6-bisphosphate aldolase.
Probab=100.00 E-value=1.7e-46 Score=350.23 Aligned_cols=199 Identities=30% Similarity=0.484 Sum_probs=179.9
Q ss_pred ceeccCcchhhhhccCC----CCCccChHHHHHHhcCChHHHHHHHHHHHhhhhhccccChhhhhhhhhhhhHHHHHHHH
Q 017271 69 EIVPDTVVFDDFERFPP----TAATVSSSLLLGICSLPDTIFRNAVDMALADSSCCELENSELRLSCFFNKALVNVGGDL 144 (374)
Q Consensus 69 ~IvaDt~d~~~i~~~~p----~daTTNPsLi~~a~~~P~ti~~~aI~~ai~~~~~~~l~~~d~~~a~~~~~~~v~~g~ei 144 (374)
.++.||+|+++|+++.+ .|.||||+||.+....+ +..+.+++
T Consensus 1 ~~~lDsa~~~ei~~~~~~~~i~GvTTNPsll~k~~~~~----------------------------------~~~~~~~i 46 (211)
T cd00956 1 KIFLDTADLEEIKKASETGLLDGVTTNPSLIAKSGRID----------------------------------FEAVLKEI 46 (211)
T ss_pred CEEecCCCHHHHHHHHhcCCcCccccCHHHHHhcCCcC----------------------------------HHHHHHHH
Confidence 37999999999999855 59999999999865422 23344577
Q ss_pred hcCCCCeEEEEecCCccCCHHHHHHHHHHHHHHhcCCCCCCCcEEEEecCChhHHHHHHHHHHcCceeEEeecCCHHHHH
Q 017271 145 AKMVPGRVSTEVDARLAYDTHGIIRKVHDLLKLYSEIDVPPERLLFKIPSTWQGIEASRLLESEGIQTHLTFVYSFAQAA 224 (374)
Q Consensus 145 l~~v~G~VS~EVdp~la~D~e~~I~eA~~L~~l~~~~gv~~~nVlIKIPaT~eGi~A~~~L~~eGI~vN~TlIFS~~QA~ 224 (374)
++.++|+||+|| .++|.++|+++|++|.+++ +|++||||+||+|++|+++|+++||+||+|+|||++||.
T Consensus 47 ~~~~~~~v~~qv---~~~~~e~~i~~a~~l~~~~-------~~~~iKIP~T~~gl~ai~~L~~~gi~v~~T~V~s~~Qa~ 116 (211)
T cd00956 47 CEIIDGPVSAQV---VSTDAEGMVAEARKLASLG-------GNVVVKIPVTEDGLKAIKKLSEEGIKTNVTAIFSAAQAL 116 (211)
T ss_pred HHhcCCCEEEEE---EeCCHHHHHHHHHHHHHhC-------CCEEEEEcCcHhHHHHHHHHHHcCCceeeEEecCHHHHH
Confidence 777899999999 6899999999999999986 699999999999999999999999999999999999999
Q ss_pred HHHHcCCcEEEechhhhhhhhhcCCCCccchhhhccCCCcHHHHHHHHHHHHHHcCccHHHHHhccCChhcHHH--hhCC
Q 017271 225 AAAQAGASVIQIFVGRLRDWARNHSGDPEIDDALKRGEDPALSLVSKAYNYIHKYGHKSKLMAAAVRNKQDLFS--LLGV 302 (374)
Q Consensus 225 aaa~AGas~ISpFVGRIdd~~~~~~~d~~~~~~~~~~~d~Gv~~v~~iy~~~k~~g~~T~vLaAS~Rn~~~i~~--laG~ 302 (374)
+|++||+.||||||||++||+ ++|++.+++++++++++|++|+||+||+||++|+++ ++||
T Consensus 117 ~Aa~AGA~yvsP~vgR~~~~g-----------------~dg~~~i~~i~~~~~~~~~~tkil~As~r~~~ei~~a~~~Ga 179 (211)
T cd00956 117 LAAKAGATYVSPFVGRIDDLG-----------------GDGMELIREIRTIFDNYGFDTKILAASIRNPQHVIEAALAGA 179 (211)
T ss_pred HHHHcCCCEEEEecChHhhcC-----------------CCHHHHHHHHHHHHHHcCCCceEEecccCCHHHHHHHHHcCC
Confidence 999999999999999999985 369999999999999999999999999999999998 7999
Q ss_pred cEecccHHHHHHHHhCCCCCcchhhh
Q 017271 303 DYIIAPLKVLQSLKESAISPDEKYSF 328 (374)
Q Consensus 303 D~lTipp~ll~~L~~~~~~~~~~~~~ 328 (374)
|++|+||+++++|..++++.+.+..|
T Consensus 180 d~vTv~~~vl~~l~~~~~t~~~v~~F 205 (211)
T cd00956 180 DAITLPPDVLEQLLKHPLTDKGVEKF 205 (211)
T ss_pred CEEEeCHHHHHHHhcCccHHHHHHHH
Confidence 99999999999999999876555555
No 20
>PRK12376 putative translaldolase; Provisional
Probab=100.00 E-value=2.3e-46 Score=354.55 Aligned_cols=187 Identities=21% Similarity=0.303 Sum_probs=165.7
Q ss_pred ceeccCcchhhhhccCC----CCCccChHHHHHHhcCChHHHHHHHHHHHhhhhhccccChhhhhhhhhhhhHHHHHHHH
Q 017271 69 EIVPDTVVFDDFERFPP----TAATVSSSLLLGICSLPDTIFRNAVDMALADSSCCELENSELRLSCFFNKALVNVGGDL 144 (374)
Q Consensus 69 ~IvaDt~d~~~i~~~~p----~daTTNPsLi~~a~~~P~ti~~~aI~~ai~~~~~~~l~~~d~~~a~~~~~~~v~~g~ei 144 (374)
.++.||+|+++|+++.+ .|.|||||||.+.... ++..+.++|
T Consensus 7 k~flDtAd~~eik~~~~~g~i~GVTTNPsll~k~g~~----------------------------------~~~~~~~~i 52 (236)
T PRK12376 7 KIFADGADLEEMLAAYKNPLVKGFTTNPSLMRKAGVT----------------------------------DYKAFAKEV 52 (236)
T ss_pred EEEEecCCHHHHHHHHhCCCeeEEECCHHHHHhcCCC----------------------------------CHHHHHHHH
Confidence 49999999999998744 5899999999986442 233455677
Q ss_pred hcCCC-CeEEEEecCCccCCHHHHHHHHHHHHHHhcCCCCCCCcEEEEecCCh----hHHHHHHHHHHcCceeEEeecCC
Q 017271 145 AKMVP-GRVSTEVDARLAYDTHGIIRKVHDLLKLYSEIDVPPERLLFKIPSTW----QGIEASRLLESEGIQTHLTFVYS 219 (374)
Q Consensus 145 l~~v~-G~VS~EVdp~la~D~e~~I~eA~~L~~l~~~~gv~~~nVlIKIPaT~----eGi~A~~~L~~eGI~vN~TlIFS 219 (374)
++.++ |+||+|| ++.|.++|+++|++|.+++ +|++||||+|| +|++|+++|+++||+||+|+|||
T Consensus 53 ~~~~~~~~vs~EV---~~~d~~~mv~eA~~l~~~~-------~nv~VKIP~T~~~G~~gl~Ai~~L~~~GI~vn~T~vfs 122 (236)
T PRK12376 53 LAEIPDAPISFEV---FADDLETMEKEAEKIASLG-------ENVYVKIPITNTKGESTIPLIKKLSADGVKLNVTAIFT 122 (236)
T ss_pred HHhcCCCcEEEEE---ecCCHHHHHHHHHHHHHhC-------CCeEEEECCcCccchhHHHHHHHHHHCCCeEEEeeecC
Confidence 77775 7999999 8999999999999999984 89999999998 78999999999999999999999
Q ss_pred HHHHHHHHHc----CCcEEEechhhhhhhhhcCCCCccchhhhccCCCcHHHHHHHHHHHHHHcCccHHHHHhccCChhc
Q 017271 220 FAQAAAAAQA----GASVIQIFVGRLRDWARNHSGDPEIDDALKRGEDPALSLVSKAYNYIHKYGHKSKLMAAAVRNKQD 295 (374)
Q Consensus 220 ~~QA~aaa~A----Gas~ISpFVGRIdd~~~~~~~d~~~~~~~~~~~d~Gv~~v~~iy~~~k~~g~~T~vLaAS~Rn~~~ 295 (374)
+.||.+|++| |++||||||||++|++ .+|+..++++.++|+++ ++|+|||||+||++|
T Consensus 123 ~~Qa~~a~~A~ag~ga~yispfvgR~dd~g-----------------~D~~~~i~~i~~i~~~~-~~tkILaASiR~~~~ 184 (236)
T PRK12376 123 IEQVKEVVDALTPGVPAIVSVFAGRIADTG-----------------VDPVPLMKEALAICHSK-PGVELLWASPREVYN 184 (236)
T ss_pred HHHHHHHHHHhcCCCCeEEEEecchhhhcC-----------------CCcHHHHHHHHHHHHhC-CCcEEEEEecCCHHH
Confidence 9999866665 5999999999999864 25899999999999886 899999999999999
Q ss_pred HHH--hhCCcEecccHHHHHHHHh
Q 017271 296 LFS--LLGVDYIIAPLKVLQSLKE 317 (374)
Q Consensus 296 i~~--laG~D~lTipp~ll~~L~~ 317 (374)
+.+ ++|||++|+||+++++|.+
T Consensus 185 v~~a~~~Gad~vTvp~~v~~~l~~ 208 (236)
T PRK12376 185 IIQADQLGCDIITVTPDVLKKLPL 208 (236)
T ss_pred HHHHHHcCCCEEEcCHHHHHHHHh
Confidence 998 6999999999999999986
No 21
>TIGR02134 transald_staph transaldolase. This small family of proteins is a member of the transaldolase sybfamily represented by pfam00923. Coxiella and Staphylococcus lack members of the known transaldolase equivalog families and appear to require a transaldolase activity for completion of the pentose phosphate pathway.
Probab=100.00 E-value=2.2e-45 Score=347.70 Aligned_cols=191 Identities=18% Similarity=0.276 Sum_probs=165.0
Q ss_pred ceeccCcchhhhhccCC----CCCccChHHHHHHhcCChHHHHHHHHHHHhhhhhccccChhhhhhhhhhhhHHHHHHHH
Q 017271 69 EIVPDTVVFDDFERFPP----TAATVSSSLLLGICSLPDTIFRNAVDMALADSSCCELENSELRLSCFFNKALVNVGGDL 144 (374)
Q Consensus 69 ~IvaDt~d~~~i~~~~p----~daTTNPsLi~~a~~~P~ti~~~aI~~ai~~~~~~~l~~~d~~~a~~~~~~~v~~g~ei 144 (374)
.++.||+|+++|+++.+ .|.|||||||.+....+ |. .+.+++
T Consensus 7 k~flDtAd~~ei~~~~~~g~i~GvTTNPsll~k~g~~~---~~-------------------------------~~~~~i 52 (236)
T TIGR02134 7 KVFADGANLEEMVKFSTHPYVKGFTTNPSLMRKAGIVD---YE-------------------------------AFAHEA 52 (236)
T ss_pred EEEEeCCCHHHHHHHHhCCCeeEEeCCHHHHHhcCCCC---HH-------------------------------HHHHHH
Confidence 49999999999998733 58999999999875322 22 222343
Q ss_pred hc-CCCCeEEEEecCCccCCHHHHHHHHHHHHHHhcCCCCCCCcEEEEecCChh-H---HHHHHHHHHcCceeEEeecCC
Q 017271 145 AK-MVPGRVSTEVDARLAYDTHGIIRKVHDLLKLYSEIDVPPERLLFKIPSTWQ-G---IEASRLLESEGIQTHLTFVYS 219 (374)
Q Consensus 145 l~-~v~G~VS~EVdp~la~D~e~~I~eA~~L~~l~~~~gv~~~nVlIKIPaT~e-G---i~A~~~L~~eGI~vN~TlIFS 219 (374)
+. ..+|+||+|| +++|.++|++||++|.++. +||+||||+|++ | ++|+++|.++||+||+|+|||
T Consensus 53 ~~~~~~~~vs~EV---~~~d~~~m~~eA~~l~~~~-------~nv~VKIP~T~~~G~~~l~ai~~L~~~GI~vn~T~vfs 122 (236)
T TIGR02134 53 LAQITDLPISFEV---FADDLDEMEKEARYIASWG-------NNVNVKIPVTNTKGESTGPLIQKLSADGITLNVTALTT 122 (236)
T ss_pred HHHccCCcEEEEE---ecCCHHHHHHHHHHHHhcC-------CCeEEEECCcCcccchHHHHHHHHHHCCCcEEeehcCC
Confidence 22 2478999999 8999999999999998883 899999999997 7 999999999999999999999
Q ss_pred HHHHHHHHH---cC-CcEEEechhhhhhhhhcCCCCccchhhhccCCCcHHHHHHHHHHHHHHcCccHHHHHhccCChhc
Q 017271 220 FAQAAAAAQ---AG-ASVIQIFVGRLRDWARNHSGDPEIDDALKRGEDPALSLVSKAYNYIHKYGHKSKLMAAAVRNKQD 295 (374)
Q Consensus 220 ~~QA~aaa~---AG-as~ISpFVGRIdd~~~~~~~d~~~~~~~~~~~d~Gv~~v~~iy~~~k~~g~~T~vLaAS~Rn~~~ 295 (374)
+.||.+|++ +| +.||||||||++|++ .+|+..++++.++|+.+ ++|+|||||+||++|
T Consensus 123 ~~Qa~~aa~A~~aG~a~yispfvgR~dd~g-----------------~D~~~~i~~i~~i~~~~-~~tkILaAS~R~~~~ 184 (236)
T TIGR02134 123 IEQVEKVCQSFTDGVPGIVSVFAGRIADTG-----------------VDPEPHMREALEIVAQK-PGVELLWASPRELFN 184 (236)
T ss_pred HHHHHHHHHHHhCCCCeEEEEecchhhhcC-----------------CCcHHHHHHHHHHHHhC-CCcEEEEEccCCHHH
Confidence 999999775 79 699999999999964 25899999999999987 799999999999999
Q ss_pred HHH--hhCCcEecccHHHHHHHH--hCCCC
Q 017271 296 LFS--LLGVDYIIAPLKVLQSLK--ESAIS 321 (374)
Q Consensus 296 i~~--laG~D~lTipp~ll~~L~--~~~~~ 321 (374)
+.+ ++|||++|+||+++++|. .++..
T Consensus 185 v~~a~~~Gad~vTvp~~v~~~l~~~~~~~~ 214 (236)
T TIGR02134 185 IIQADRIGCDIITCAHDILAKLPLLGKDLT 214 (236)
T ss_pred HHHHHHcCCCEEECCHHHHHHHHhcCCCCC
Confidence 998 699999999999999996 45443
No 22
>PRK09533 bifunctional transaldolase/phosoglucose isomerase; Validated
Probab=100.00 E-value=7.2e-43 Score=380.68 Aligned_cols=253 Identities=24% Similarity=0.283 Sum_probs=211.2
Q ss_pred CccCHHHHHhccCceeccCcchhh-hhccCCCCCccChHHHHHHhcCChHHHHHHHHHHHhhh------hhccccChhhh
Q 017271 56 GLSTELDAVSSFSEIVPDTVVFDD-FERFPPTAATVSSSLLLGICSLPDTIFRNAVDMALADS------SCCELENSELR 128 (374)
Q Consensus 56 ~~~t~Ld~Lk~~t~IvaDt~d~~~-i~~~~p~daTTNPsLi~~a~~~P~ti~~~aI~~ai~~~------~~~~l~~~d~~ 128 (374)
|.+-|||.|.+ =+.+++++.. |.+..++|+||||+++.++...- ..|+..|++.+.++ .++.+...|++
T Consensus 11 gqsiWlD~l~R---~~l~~g~l~~li~~~~~~GvTsNPsIf~~Ai~~~-~~Y~~~i~~l~~~~~~~~~~~~~~L~~~di~ 86 (948)
T PRK09533 11 GQSVWLDFLAR---GFIAKGELKRLVEEDGLRGVTSNPAIFEKAIGSS-DEYDDAIKAALAEGDRSVIELYETLAIEDIQ 86 (948)
T ss_pred CcEEeecccch---hcccCchHHHHHHhCCCceeecCHHHHHHHHhCC-HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 45566777665 5666799977 66889999999999999998743 34999999887655 35556678999
Q ss_pred hhhhhhhhHHHHHHHHhcCCCCeEEEEecCCccCCHHHHHHHHHHHHHHhcCCCCCCCcEEEEecCChhHHHHHHHHHHc
Q 017271 129 LSCFFNKALVNVGGDLAKMVPGRVSTEVDARLAYDTHGIIRKVHDLLKLYSEIDVPPERLLFKIPSTWQGIEASRLLESE 208 (374)
Q Consensus 129 ~a~~~~~~~v~~g~eil~~v~G~VS~EVdp~la~D~e~~I~eA~~L~~l~~~~gv~~~nVlIKIPaT~eGi~A~~~L~~e 208 (374)
.+|++.++.+ +..++.+|+||+||||++++|+++||++|++|++. ++++|+|||||+||+||+||++|.++
T Consensus 87 ~A~d~l~p~~----~~~~g~~G~VS~EV~P~la~d~e~~i~eA~~L~~~-----v~~~nv~IKIPaT~~Gl~Ai~~L~~~ 157 (948)
T PRK09533 87 AAADVLRPVY----DATDGADGFVSLEVSPYLALDTEGTIAEARRLWAA-----VDRPNLMIKVPATPEGLPAIRQLIAE 157 (948)
T ss_pred HHHHHHHHHH----HhcCCCCCeEEEEEecccccCHHHHHHHHHHHHHh-----cCCCCEEEEeCCCHHHHHHHHHHHHC
Confidence 9999999999 88999999999999999999999999999999987 67899999999999999999999999
Q ss_pred CceeEEeecCCHHHHHHHHHc-----------C------CcEEEechhhhhhhhhcCCCCc-------cchhhhc-cCCC
Q 017271 209 GIQTHLTFVYSFAQAAAAAQA-----------G------ASVIQIFVGRLRDWARNHSGDP-------EIDDALK-RGED 263 (374)
Q Consensus 209 GI~vN~TlIFS~~QA~aaa~A-----------G------as~ISpFVGRIdd~~~~~~~d~-------~~~~~~~-~~~d 263 (374)
||+||+|+|||++|+.+|++| | ++|+||||||||+|+|++.... +..+.+. ...+
T Consensus 158 GI~vn~TliFS~~q~~~~~~A~~~gle~~~~aG~d~~~i~sv~S~fvsRiD~~~d~~l~~~~~~~~dp~~~~~~~~l~gk 237 (948)
T PRK09533 158 GINVNVTLLFSQDVYEEVAEAYISGLEARAAKGGDPSHVASVASFFVSRIDSAVDKRLDEKIAAANDPAEKAALEALKGK 237 (948)
T ss_pred CCeeeEEEEecHHHHHHHHHHHHHHHHHHHhcCCCcccCceEEEEehhhHHHHHHhhhhhhccccCCcchhhhhhhhccH
Confidence 999999999999999999866 7 8999999999999998765422 1111111 1135
Q ss_pred cHHHHHHHHHHHHH------------HcCcc-HHHHHhc-------cCChhcHHHhhCCcEe-cccHHHHHHHHhCCCC
Q 017271 264 PALSLVSKAYNYIH------------KYGHK-SKLMAAA-------VRNKQDLFSLLGVDYI-IAPLKVLQSLKESAIS 321 (374)
Q Consensus 264 ~Gv~~v~~iy~~~k------------~~g~~-T~vLaAS-------~Rn~~~i~~laG~D~l-Tipp~ll~~L~~~~~~ 321 (374)
.||++++.+|+.|+ +.|.+ ++.|||| .++..-+-+|+|.|.+ |+|++.++++.+|+..
T Consensus 238 ~~ianAk~ay~~~~~~~~~~rw~~l~~~ga~~qR~LwASTg~K~p~~~d~~Yv~~Lig~~tVnT~P~~tl~A~~~hg~~ 316 (948)
T PRK09533 238 VAIANAKLAYQRYKRLFAGPRWEALAAKGAKPQRLLWASTGTKNKAYSDVLYVEELIGPDTVNTMPPATLDAFRDHGKV 316 (948)
T ss_pred HHHHHHHHHHHHHHHHhcchhHHHHHhCCCCcceeEEeecCCCCcccCCcccHHHhcCcCcccCCCHHHHHHHHhcCCc
Confidence 79999999999987 34554 6677888 5666667789999998 9999999999999763
No 23
>PRK03903 transaldolase; Provisional
Probab=100.00 E-value=1.9e-41 Score=326.64 Aligned_cols=185 Identities=25% Similarity=0.326 Sum_probs=161.8
Q ss_pred hccccChhhhhhhhhhhhHHHHHHHHhcCCCCeEEEEecCCccCCHHHHHHHHHHHHHHhcCCCCCCCcEEEEecCChhH
Q 017271 119 CCELENSELRLSCFFNKALVNVGGDLAKMVPGRVSTEVDARLAYDTHGIIRKVHDLLKLYSEIDVPPERLLFKIPSTWQG 198 (374)
Q Consensus 119 ~~~l~~~d~~~a~~~~~~~v~~g~eil~~v~G~VS~EVdp~la~D~e~~I~eA~~L~~l~~~~gv~~~nVlIKIPaT~eG 198 (374)
++.|...|++.+|++..+.+. - +.+|+||+||||++++|+++||++|++|+++ +++||+|||||+||+|
T Consensus 18 ye~la~~Di~~a~d~l~p~~~----~--g~~G~VS~EV~P~la~d~~~~i~ea~~L~~~-----~~~~nv~IKIPaT~~G 86 (274)
T PRK03903 18 YEELAIKDIKKAADKLLPLYE----K--PDDGFISIEIDPFLEDDAAGSIEEGKRLYKT-----IGRPNVMIKVPATKAG 86 (274)
T ss_pred HHHHHHHHHHHHHHHhHHHhc----C--CCCCeEEEEEccccccCHHHHHHHHHHHHHh-----cCCCCEEEEeCCCHHH
Confidence 334567889999999999883 2 7899999999999999999999999999886 6679999999999999
Q ss_pred HHHHHHHHHcCceeEEeecCCHHHHHHHHHc---CC--------cEEEechhhhhhhhhcCCCCccchhhhccCCCcHHH
Q 017271 199 IEASRLLESEGIQTHLTFVYSFAQAAAAAQA---GA--------SVIQIFVGRLRDWARNHSGDPEIDDALKRGEDPALS 267 (374)
Q Consensus 199 i~A~~~L~~eGI~vN~TlIFS~~QA~aaa~A---Ga--------s~ISpFVGRIdd~~~~~~~d~~~~~~~~~~~d~Gv~ 267 (374)
++||++|.++||+||+|+|||++||.+|++| |+ +||||||||||++++.+..... + . .+.||+
T Consensus 87 l~Ai~~L~~~GI~vn~TliFS~~Qa~~~a~A~~~Ga~~~~~~~~sviS~fVgRiD~~~d~~l~~~~----l-~-~~~gIa 160 (274)
T PRK03903 87 YEAMSALMKKGISVNATLIFSPEQAKECAEALNEGLKKNTKDPKAVISVFVSRFDRLLDPKLAPKN----L-Q-AKSGIM 160 (274)
T ss_pred HHHHHHHHHCCCcEEEeeecCHHHHHHHHHHHHcCcccccccCCceeeeecchHhhhccccccccc----c-c-ccHHHH
Confidence 9999999999999999999999999998776 96 6699999999999876444321 1 1 368999
Q ss_pred HHHHHHHHHHHcC-ccHHHHHhc--cCC----hhcHHH--hhCCcEecccHHHHHHHHhCCC
Q 017271 268 LVSKAYNYIHKYG-HKSKLMAAA--VRN----KQDLFS--LLGVDYIIAPLKVLQSLKESAI 320 (374)
Q Consensus 268 ~v~~iy~~~k~~g-~~T~vLaAS--~Rn----~~~i~~--laG~D~lTipp~ll~~L~~~~~ 320 (374)
+++++|++|+++| .++++|||| +|| ..++.+ +.|+++.|+|+++++++.+|+.
T Consensus 161 ~a~~~y~~~~~~g~~~~riL~AStg~Kn~~~~~~~yv~~L~~g~~v~T~P~~tl~a~~~hg~ 222 (274)
T PRK03903 161 NATKCYNQIEQHANKNIRTLFASTGVKGDDLPKDYYIKELLFKNSINTAPLDTIEAFLKDGN 222 (274)
T ss_pred HHHHHHHHHHHcCCCCcEEEEEecccCCCCCChHHHHHHHhCCCCeeeCCHHHHHHHHhcCC
Confidence 9999999999985 579999999 799 888877 5778899999999999999854
No 24
>CHL00162 thiG thiamin biosynthesis protein G; Validated
Probab=93.66 E-value=0.6 Score=45.68 Aligned_cols=129 Identities=12% Similarity=0.098 Sum_probs=86.8
Q ss_pred ccCCHHHHHHHHHHHHHHhcCCCCCCCcEEEEe----------cCChhHHHHHHHHHHcCceeEEeecCCHHHHHHHHHc
Q 017271 160 LAYDTHGIIRKVHDLLKLYSEIDVPPERLLFKI----------PSTWQGIEASRLLESEGIQTHLTFVYSFAQAAAAAQA 229 (374)
Q Consensus 160 la~D~e~~I~eA~~L~~l~~~~gv~~~nVlIKI----------PaT~eGi~A~~~L~~eGI~vN~TlIFS~~QA~aaa~A 229 (374)
-+++.++-|+-|+--.+++...|....| +||+ |-.-|-++|+++|.++|..|.--.-=.+.=|....++
T Consensus 79 Gc~tA~EAv~~A~laRe~~~~~~~~~~~-wIKLEVi~D~~~LlPD~~etl~Aae~Lv~eGF~VlPY~~~D~v~a~rLed~ 157 (267)
T CHL00162 79 GCQTAEEAIRMAFLGRELAKQLGQEDNN-FVKLEVISDPKYLLPDPIGTLKAAEFLVKKGFTVLPYINADPMLAKHLEDI 157 (267)
T ss_pred CCCCHHHHHHHHHHHHHHhccccccCCC-eEEEEEeCCCcccCCChHHHHHHHHHHHHCCCEEeecCCCCHHHHHHHHHc
Confidence 4566766666665444444333332223 6776 4445789999999999999977766677777777899
Q ss_pred CCcEEEechhhhhhhhhcCCCCccchhhhccCCCcHHHHHHHHHHHHHHcCccHHHH-HhccCChhcHHH--hhCCcEec
Q 017271 230 GASVIQIFVGRLRDWARNHSGDPEIDDALKRGEDPALSLVSKAYNYIHKYGHKSKLM-AAAVRNKQDLFS--LLGVDYII 306 (374)
Q Consensus 230 Gas~ISpFVGRIdd~~~~~~~d~~~~~~~~~~~d~Gv~~v~~iy~~~k~~g~~T~vL-aAS~Rn~~~i~~--laG~D~lT 306 (374)
||..+=|.-+-|-. .-|+.+-..+.-+.++. ++.|| .|.+....++.. .+|||-+-
T Consensus 158 Gc~aVMPlgsPIGS-------------------g~Gl~n~~~l~~i~e~~--~vpVivdAGIgt~sDa~~AmElGaDgVL 216 (267)
T CHL00162 158 GCATVMPLGSPIGS-------------------GQGLQNLLNLQIIIENA--KIPVIIDAGIGTPSEASQAMELGASGVL 216 (267)
T ss_pred CCeEEeeccCcccC-------------------CCCCCCHHHHHHHHHcC--CCcEEEeCCcCCHHHHHHHHHcCCCEEe
Confidence 99999998777732 23665555554444433 34444 799999999987 69999874
Q ss_pred ccHH
Q 017271 307 APLK 310 (374)
Q Consensus 307 ipp~ 310 (374)
+.-.
T Consensus 217 ~nSa 220 (267)
T CHL00162 217 LNTA 220 (267)
T ss_pred ecce
Confidence 4433
No 25
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=93.12 E-value=1.3 Score=43.52 Aligned_cols=142 Identities=18% Similarity=0.191 Sum_probs=87.7
Q ss_pred CCCeEEEEecCCccCCHHHHHHHHHHHHHHhcCCCCCCCcEEEEecCChhH----HHHHHHHHHc-CceeEEeecCCHHH
Q 017271 148 VPGRVSTEVDARLAYDTHGIIRKVHDLLKLYSEIDVPPERLLFKIPSTWQG----IEASRLLESE-GIQTHLTFVYSFAQ 222 (374)
Q Consensus 148 v~G~VS~EVdp~la~D~e~~I~eA~~L~~l~~~~gv~~~nVlIKIPaT~eG----i~A~~~L~~e-GI~vN~TlIFS~~Q 222 (374)
.++++.+|+-+ ..|.+.+.+.++++.+. |+ +-|.|=+-+..+| .+.++++.+. ++++-+-.+.+.+.
T Consensus 114 ~~~~~~~ql~~--~~~~~~~~~~i~~~~~~----g~--~~i~l~~~~p~~~~~~~~~~i~~l~~~~~~pvivK~v~s~~~ 185 (299)
T cd02809 114 APGPRWFQLYV--PRDREITEDLLRRAEAA----GY--KALVLTVDTPVLGRRLTWDDLAWLRSQWKGPLILKGILTPED 185 (299)
T ss_pred cCCCeEEEEee--cCCHHHHHHHHHHHHHc----CC--CEEEEecCCCCCCCCCCHHHHHHHHHhcCCCEEEeecCCHHH
Confidence 34788888832 23555555444444332 22 2233322222222 3566777776 88888888899999
Q ss_pred HHHHHHcCCcEEEec--hhhhhhhhhcCCCCccchhhhccCCCcHHHHHHHHHHHHHHcCccHHHHH-hccCChhcHHH-
Q 017271 223 AAAAAQAGASVIQIF--VGRLRDWARNHSGDPEIDDALKRGEDPALSLVSKAYNYIHKYGHKSKLMA-AAVRNKQDLFS- 298 (374)
Q Consensus 223 A~aaa~AGas~ISpF--VGRIdd~~~~~~~d~~~~~~~~~~~d~Gv~~v~~iy~~~k~~g~~T~vLa-AS~Rn~~~i~~- 298 (374)
|..|.++|+..|... -||..+|+ .+.+..+.++.+.+ +.+..|++ -.+|+..++.+
T Consensus 186 a~~a~~~G~d~I~v~~~gG~~~~~g-----------------~~~~~~l~~i~~~~---~~~ipvia~GGI~~~~d~~ka 245 (299)
T cd02809 186 ALRAVDAGADGIVVSNHGGRQLDGA-----------------PATIDALPEIVAAV---GGRIEVLLDGGIRRGTDVLKA 245 (299)
T ss_pred HHHHHHCCCCEEEEcCCCCCCCCCC-----------------cCHHHHHHHHHHHh---cCCCeEEEeCCCCCHHHHHHH
Confidence 999999999888774 33332221 13455555554433 22344554 56789999987
Q ss_pred -hhCCcEecccHHHHHHHHh
Q 017271 299 -LLGVDYIIAPLKVLQSLKE 317 (374)
Q Consensus 299 -laG~D~lTipp~ll~~L~~ 317 (374)
.+|||.+.+.-.++..+..
T Consensus 246 l~lGAd~V~ig~~~l~~~~~ 265 (299)
T cd02809 246 LALGADAVLIGRPFLYGLAA 265 (299)
T ss_pred HHcCCCEEEEcHHHHHHHHh
Confidence 5999999888888877654
No 26
>PRK00208 thiG thiazole synthase; Reviewed
Probab=91.88 E-value=0.96 Score=44.07 Aligned_cols=125 Identities=14% Similarity=0.117 Sum_probs=81.4
Q ss_pred ccCCHHHHHHHHHHHHHHhcCCCCCCCcEEEEe----------cCChhHHHHHHHHHHcCceeEEeecCCHHHHHHHHHc
Q 017271 160 LAYDTHGIIRKVHDLLKLYSEIDVPPERLLFKI----------PSTWQGIEASRLLESEGIQTHLTFVYSFAQAAAAAQA 229 (374)
Q Consensus 160 la~D~e~~I~eA~~L~~l~~~~gv~~~nVlIKI----------PaT~eGi~A~~~L~~eGI~vN~TlIFS~~QA~aaa~A 229 (374)
-+++.++-|+-|+--.+++ ..=+||+ |-..+-++|+++|.++|..|.--..=++..+.+.+++
T Consensus 71 G~~ta~eAv~~a~lare~~-------~~~~iKlEVi~d~~~llpd~~~tv~aa~~L~~~Gf~vlpyc~~d~~~ak~l~~~ 143 (250)
T PRK00208 71 GCRTAEEAVRTARLAREAL-------GTNWIKLEVIGDDKTLLPDPIETLKAAEILVKEGFVVLPYCTDDPVLAKRLEEA 143 (250)
T ss_pred CCCCHHHHHHHHHHHHHHh-------CCCeEEEEEecCCCCCCcCHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHc
Confidence 4667766666666555554 2336775 3334779999999999999876777899999999999
Q ss_pred CCcEEEechhhhhhhhhcCCCCccchhhhccCCCcHHHHHHHHHHHHHHcCccHHH-HHhccCChhcHHH--hhCCcEec
Q 017271 230 GASVIQIFVGRLRDWARNHSGDPEIDDALKRGEDPALSLVSKAYNYIHKYGHKSKL-MAAAVRNKQDLFS--LLGVDYII 306 (374)
Q Consensus 230 Gas~ISpFVGRIdd~~~~~~~d~~~~~~~~~~~d~Gv~~v~~iy~~~k~~g~~T~v-LaAS~Rn~~~i~~--laG~D~lT 306 (374)
|+.++-|.-.-|- ..-|+.+ ....+.+++. .+..| ..|.+.+.+++.. .+|||.+.
T Consensus 144 G~~~vmPlg~pIG-------------------sg~gi~~-~~~i~~i~e~-~~vpVIveaGI~tpeda~~AmelGAdgVl 202 (250)
T PRK00208 144 GCAAVMPLGAPIG-------------------SGLGLLN-PYNLRIIIEQ-ADVPVIVDAGIGTPSDAAQAMELGADAVL 202 (250)
T ss_pred CCCEeCCCCcCCC-------------------CCCCCCC-HHHHHHHHHh-cCCeEEEeCCCCCHHHHHHHHHcCCCEEE
Confidence 9999944322221 1123322 2222333332 23334 4788999999987 58999886
Q ss_pred ccHHHH
Q 017271 307 APLKVL 312 (374)
Q Consensus 307 ipp~ll 312 (374)
+.-.+.
T Consensus 203 V~SAIt 208 (250)
T PRK00208 203 LNTAIA 208 (250)
T ss_pred EChHhh
Confidence 654443
No 27
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=91.57 E-value=1 Score=41.34 Aligned_cols=110 Identities=20% Similarity=0.221 Sum_probs=66.5
Q ss_pred HHHHHHHHHhcCCCCCCCcEEEEecCCh---hHHHHHHHHHHc--CceeEEee-cCCHH--HHHHHHHcCCcEEEechhh
Q 017271 169 RKVHDLLKLYSEIDVPPERLLFKIPSTW---QGIEASRLLESE--GIQTHLTF-VYSFA--QAAAAAQAGASVIQIFVGR 240 (374)
Q Consensus 169 ~eA~~L~~l~~~~gv~~~nVlIKIPaT~---eGi~A~~~L~~e--GI~vN~Tl-IFS~~--QA~aaa~AGas~ISpFVGR 240 (374)
++|.++.+.. +-|+ -.|||..++ .|++.++.|.+. +..+-+.+ ++.+. |+..+.++|+.+|+.-.-.
T Consensus 12 ~~a~~~~~~l-~~~v----~~iev~~~l~~~~g~~~i~~l~~~~~~~~i~~d~k~~d~~~~~~~~~~~~Gad~i~vh~~~ 86 (206)
T TIGR03128 12 EEALELAEKV-ADYV----DIIEIGTPLIKNEGIEAVKEMKEAFPDRKVLADLKTMDAGEYEAEQAFAAGADIVTVLGVA 86 (206)
T ss_pred HHHHHHHHHc-ccCe----eEEEeCCHHHHHhCHHHHHHHHHHCCCCEEEEEEeeccchHHHHHHHHHcCCCEEEEeccC
Confidence 3455555543 2333 369996333 689999999887 55555555 55666 8899999999988743210
Q ss_pred hhhhhhcCCCCccchhhhccCCCcHHHHHHHHHHHHHHcCccHHHHHh--ccCCh-hcHHH--hhCCcEecccH
Q 017271 241 LRDWARNHSGDPEIDDALKRGEDPALSLVSKAYNYIHKYGHKSKLMAA--AVRNK-QDLFS--LLGVDYIIAPL 309 (374)
Q Consensus 241 Idd~~~~~~~d~~~~~~~~~~~d~Gv~~v~~iy~~~k~~g~~T~vLaA--S~Rn~-~~i~~--laG~D~lTipp 309 (374)
+-....++.++.+++|.+. +.+ +.... .++.. ..|+|++++.|
T Consensus 87 ------------------------~~~~~~~~i~~~~~~g~~~--~~~~~~~~t~~~~~~~~~~~g~d~v~~~p 134 (206)
T TIGR03128 87 ------------------------DDATIKGAVKAAKKHGKEV--QVDLINVKDKVKRAKELKELGADYIGVHT 134 (206)
T ss_pred ------------------------CHHHHHHHHHHHHHcCCEE--EEEecCCCChHHHHHHHHHcCCCEEEEcC
Confidence 1123456667777776543 222 22222 33332 35999998765
No 28
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=91.29 E-value=0.87 Score=44.14 Aligned_cols=142 Identities=11% Similarity=0.123 Sum_probs=86.7
Q ss_pred HHhcCCC-CeEEEEecCCccCCHHHHHHHHHHHHHHhcCCCCCCCcEEEEe----------cCChhHHHHHHHHHHcCce
Q 017271 143 DLAKMVP-GRVSTEVDARLAYDTHGIIRKVHDLLKLYSEIDVPPERLLFKI----------PSTWQGIEASRLLESEGIQ 211 (374)
Q Consensus 143 eil~~v~-G~VS~EVdp~la~D~e~~I~eA~~L~~l~~~~gv~~~nVlIKI----------PaT~eGi~A~~~L~~eGI~ 211 (374)
.+++.++ -.+.+=-+---+++.++-|.-|+--.+++ ..=+||+ |-..+-++|+++|.++|..
T Consensus 53 ~~~~~i~~~~~~lLPNTaGc~tA~EAv~~A~laRe~~-------~t~wIKLEVi~D~~~L~PD~~etl~Aae~Lv~eGF~ 125 (247)
T PF05690_consen 53 NILDYIDRSGYTLLPNTAGCRTAEEAVRTARLAREAF-------GTNWIKLEVIGDDKTLLPDPIETLKAAEILVKEGFV 125 (247)
T ss_dssp HCCCCTTCCTSEEEEE-TT-SSHHHHHHHHHHHHHTT-------S-SEEEE--BS-TTT--B-HHHHHHHHHHHHHTT-E
T ss_pred cHHHHhcccCCEECCcCCCCCCHHHHHHHHHHHHHHc-------CCCeEEEEEeCCCCCcCCChhHHHHHHHHHHHCCCE
Confidence 4555554 23444444446777776666666555554 3446886 5555889999999999999
Q ss_pred eEEeecCCHHHHHHHHHcCCcEEEechhhhhhhhhcCCCCccchhhhccCCCcHHHHHHHHHHHHHHcCccHHHHHhccC
Q 017271 212 THLTFVYSFAQAAAAAQAGASVIQIFVGRLRDWARNHSGDPEIDDALKRGEDPALSLVSKAYNYIHKYGHKSKLMAAAVR 291 (374)
Q Consensus 212 vN~TlIFS~~QA~aaa~AGas~ISpFVGRIdd~~~~~~~d~~~~~~~~~~~d~Gv~~v~~iy~~~k~~g~~T~vLaAS~R 291 (374)
|.--.-=.+.-+....++||..+=|.-+-|-. .-|+.+-..+..+.++.+. ..|+-|.+.
T Consensus 126 VlPY~~~D~v~akrL~d~GcaavMPlgsPIGS-------------------g~Gi~n~~~l~~i~~~~~v-PvIvDAGiG 185 (247)
T PF05690_consen 126 VLPYCTDDPVLAKRLEDAGCAAVMPLGSPIGS-------------------GRGIQNPYNLRIIIERADV-PVIVDAGIG 185 (247)
T ss_dssp EEEEE-S-HHHHHHHHHTT-SEBEEBSSSTTT----------------------SSTHHHHHHHHHHGSS-SBEEES---
T ss_pred EeecCCCCHHHHHHHHHCCCCEEEeccccccc-------------------CcCCCCHHHHHHHHHhcCC-cEEEeCCCC
Confidence 97777777777777889999999998777632 2355555544444555533 234568888
Q ss_pred ChhcHHH--hhCCcEecccHHH
Q 017271 292 NKQDLFS--LLGVDYIIAPLKV 311 (374)
Q Consensus 292 n~~~i~~--laG~D~lTipp~l 311 (374)
.+.+... .+|||.+-+.-.+
T Consensus 186 ~pSdaa~AMElG~daVLvNTAi 207 (247)
T PF05690_consen 186 TPSDAAQAMELGADAVLVNTAI 207 (247)
T ss_dssp SHHHHHHHHHTT-SEEEESHHH
T ss_pred CHHHHHHHHHcCCceeehhhHH
Confidence 8888876 6999998776554
No 29
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=91.07 E-value=1.4 Score=42.87 Aligned_cols=125 Identities=13% Similarity=0.098 Sum_probs=79.8
Q ss_pred ccCCHHHHHHHHHHHHHHhcCCCCCCCcEEEEecC----------ChhHHHHHHHHHHcCceeEEeecCCHHHHHHHHHc
Q 017271 160 LAYDTHGIIRKVHDLLKLYSEIDVPPERLLFKIPS----------TWQGIEASRLLESEGIQTHLTFVYSFAQAAAAAQA 229 (374)
Q Consensus 160 la~D~e~~I~eA~~L~~l~~~~gv~~~nVlIKIPa----------T~eGi~A~~~L~~eGI~vN~TlIFS~~QA~aaa~A 229 (374)
-+++.++-|+-|+--.+++ ..=+||+=. -.+-++|+++|.++|..+.--..=++..+.+.+++
T Consensus 71 G~~ta~eAv~~a~lare~~-------~~~~iKlEVi~d~~~Llpd~~~tv~aa~~L~~~Gf~vlpyc~dd~~~ar~l~~~ 143 (248)
T cd04728 71 GCRTAEEAVRTARLAREAL-------GTDWIKLEVIGDDKTLLPDPIETLKAAEILVKEGFTVLPYCTDDPVLAKRLEDA 143 (248)
T ss_pred CCCCHHHHHHHHHHHHHHh-------CCCeEEEEEecCccccccCHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHc
Confidence 4566655555555444443 222677533 33679999999999999987778899999999999
Q ss_pred CCcEEEechhhhhhhhhcCCCCccchhhhccCCCcHHHHHHHHHHHHHHcCccHHHH-HhccCChhcHHH--hhCCcEec
Q 017271 230 GASVIQIFVGRLRDWARNHSGDPEIDDALKRGEDPALSLVSKAYNYIHKYGHKSKLM-AAAVRNKQDLFS--LLGVDYII 306 (374)
Q Consensus 230 Gas~ISpFVGRIdd~~~~~~~d~~~~~~~~~~~d~Gv~~v~~iy~~~k~~g~~T~vL-aAS~Rn~~~i~~--laG~D~lT 306 (374)
|+.++-|.-.-|- ..-|+.+ .+..+.+++. .++.|| .|.+.+.+++.. .+|+|.+.
T Consensus 144 G~~~vmPlg~pIG-------------------sg~Gi~~-~~~I~~I~e~-~~vpVI~egGI~tpeda~~AmelGAdgVl 202 (248)
T cd04728 144 GCAAVMPLGSPIG-------------------SGQGLLN-PYNLRIIIER-ADVPVIVDAGIGTPSDAAQAMELGADAVL 202 (248)
T ss_pred CCCEeCCCCcCCC-------------------CCCCCCC-HHHHHHHHHh-CCCcEEEeCCCCCHHHHHHHHHcCCCEEE
Confidence 9999944322221 1123323 1222233333 244444 688999999987 69999986
Q ss_pred ccHHHH
Q 017271 307 APLKVL 312 (374)
Q Consensus 307 ipp~ll 312 (374)
+.-.+.
T Consensus 203 V~SAIt 208 (248)
T cd04728 203 LNTAIA 208 (248)
T ss_pred EChHhc
Confidence 655543
No 30
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=90.33 E-value=0.8 Score=45.13 Aligned_cols=137 Identities=14% Similarity=0.154 Sum_probs=95.5
Q ss_pred CeEEEEecCCccCCHHHHHHHHHHHHHHhcCCCCCCCcEEEEecCChhHHHHHHHHHHcCceeEEeecCCHHHHHHHHHc
Q 017271 150 GRVSTEVDARLAYDTHGIIRKVHDLLKLYSEIDVPPERLLFKIPSTWQGIEASRLLESEGIQTHLTFVYSFAQAAAAAQA 229 (374)
Q Consensus 150 G~VS~EVdp~la~D~e~~I~eA~~L~~l~~~~gv~~~nVlIKIPaT~eGi~A~~~L~~eGI~vN~TlIFS~~QA~aaa~A 229 (374)
|.-|+++|.. ..+.++.++.++++.++.++.|++-+-=+.-|+....+. ...-..+.+++|+..+.+.
T Consensus 97 G~tsVm~d~s-~~~~~eni~~t~~v~~~a~~~gv~veaE~ghlG~~d~~~-----------~~~g~s~t~~eea~~f~~~ 164 (281)
T PRK06806 97 GFTSVMFDGS-HLPLEENIQKTKEIVELAKQYGATVEAEIGRVGGSEDGS-----------EDIEMLLTSTTEAKRFAEE 164 (281)
T ss_pred CCCEEEEcCC-CCCHHHHHHHHHHHHHHHHHcCCeEEEEeeeECCccCCc-----------ccccceeCCHHHHHHHHHh
Confidence 8899999986 467899999999999999998886333333444333331 1111335799999999865
Q ss_pred -CCcEEEechhhhhhhhhcCCCCccchhhhccCCCcHHHHHHHHHHHHHHcCccHHHHHhccCChhcHHH--hhCCcEec
Q 017271 230 -GASVIQIFVGRLRDWARNHSGDPEIDDALKRGEDPALSLVSKAYNYIHKYGHKSKLMAAAVRNKQDLFS--LLGVDYII 306 (374)
Q Consensus 230 -Gas~ISpFVGRIdd~~~~~~~d~~~~~~~~~~~d~Gv~~v~~iy~~~k~~g~~T~vLaAS~Rn~~~i~~--laG~D~lT 306 (374)
|++|+++=+|-+--.++ .. ..-|+...+++.+.. +.+.-..++|.-+.+++.+ ..|++-+-
T Consensus 165 tg~DyLAvaiG~~hg~~~---~~----------~~l~~~~L~~i~~~~---~iPlV~hG~SGI~~e~~~~~i~~G~~kin 228 (281)
T PRK06806 165 TDVDALAVAIGNAHGMYN---GD----------PNLRFDRLQEINDVV---HIPLVLHGGSGISPEDFKKCIQHGIRKIN 228 (281)
T ss_pred hCCCEEEEccCCCCCCCC---CC----------CccCHHHHHHHHHhc---CCCEEEECCCCCCHHHHHHHHHcCCcEEE
Confidence 99999998888865441 11 123677777776543 4566677899999999877 58888776
Q ss_pred ccHHHHHH
Q 017271 307 APLKVLQS 314 (374)
Q Consensus 307 ipp~ll~~ 314 (374)
+--.+...
T Consensus 229 v~T~i~~a 236 (281)
T PRK06806 229 VATATFNS 236 (281)
T ss_pred EhHHHHHH
Confidence 55555543
No 31
>PF03740 PdxJ: Pyridoxal phosphate biosynthesis protein PdxJ; InterPro: IPR004569 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. In Escherichia coli, the pdx genes involved in vitamin B6 have been characterised [, , ]. This entry represents PdxJ, which catalyses the condensation of 1-amino-3-oxo-4-(phosphohydroxy)propan-2-one and 1-deoxy-D-xylulose-5-phosphate to form pyridoxine-5'-phosphate. The product of the PdxJ reaction is then oxidized by PdxH to pyridoxal 5'-phosphate.; GO: 0008615 pyridoxine biosynthetic process, 0005737 cytoplasm; PDB: 3F4N_B 3O6D_A 3O6C_A 1M5W_G 1IXQ_D 1IXP_B 1IXN_A 1HO4_C 1HO1_A 1IXO_D ....
Probab=86.88 E-value=8.5 Score=37.39 Aligned_cols=87 Identities=18% Similarity=0.244 Sum_probs=63.9
Q ss_pred HhcCCCCeEEEEecCCccCCHHHHHHHHHHHHHHhcCCCCCCCcEEEEecCChh-----H-----------HHHHHHHHH
Q 017271 144 LAKMVPGRVSTEVDARLAYDTHGIIRKVHDLLKLYSEIDVPPERLLFKIPSTWQ-----G-----------IEASRLLES 207 (374)
Q Consensus 144 il~~v~G~VS~EVdp~la~D~e~~I~eA~~L~~l~~~~gv~~~nVlIKIPaT~e-----G-----------i~A~~~L~~ 207 (374)
+.+.+..++-+|..| +++|++-|.++ +|..+-=+|-..+ | -+++++|.+
T Consensus 58 L~~~~~~~lNlE~a~-----t~e~~~ia~~~----------kP~~vtLVPE~r~e~TTegGldv~~~~~~l~~~i~~L~~ 122 (239)
T PF03740_consen 58 LRELVKTPLNLEMAP-----TEEMVDIALKV----------KPDQVTLVPEKREELTTEGGLDVAGNRDRLKPVIKRLKD 122 (239)
T ss_dssp HHHH-SSEEEEEEES-----SHHHHHHHHHH------------SEEEEE--SGGGBSTTSSB-TCGGHHHHHHHHHHHHH
T ss_pred HHHHcccCEEeccCC-----CHHHHHHHHhC----------CcCEEEECCCCCCCcCCCcCChhhcCHHHHHHHHHHHHh
Confidence 344455689999977 68899987665 2555566776543 2 578899999
Q ss_pred cCceeEEeecCCHHHHHHHHHcCCcEEEechhhhhhhh
Q 017271 208 EGIQTHLTFVYSFAQAAAAAQAGASVIQIFVGRLRDWA 245 (374)
Q Consensus 208 eGI~vN~TlIFS~~QA~aaa~AGas~ISpFVGRIdd~~ 245 (374)
.||+|-+-+==.++|..+|.+.|+.+|=.+-|...+.+
T Consensus 123 ~gIrvSLFiDP~~~qi~~A~~~Gad~VELhTG~yA~a~ 160 (239)
T PF03740_consen 123 AGIRVSLFIDPDPEQIEAAKELGADRVELHTGPYANAF 160 (239)
T ss_dssp TT-EEEEEE-S-HHHHHHHHHTT-SEEEEETHHHHHHS
T ss_pred CCCEEEEEeCCCHHHHHHHHHcCCCEEEEehhHhhhhc
Confidence 99999999999999999999999999999999998865
No 32
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=84.38 E-value=14 Score=39.32 Aligned_cols=120 Identities=23% Similarity=0.281 Sum_probs=80.0
Q ss_pred HHHHHHHHHHHhcCCCCCCCcEEEEec--CChhHHHHHHHHHHc--CceeEEeecCCHHHHHHHHHcCCcEEEechh---
Q 017271 167 IIRKVHDLLKLYSEIDVPPERLLFKIP--STWQGIEASRLLESE--GIQTHLTFVYSFAQAAAAAQAGASVIQIFVG--- 239 (374)
Q Consensus 167 ~I~eA~~L~~l~~~~gv~~~nVlIKIP--aT~eGi~A~~~L~~e--GI~vN~TlIFS~~QA~aaa~AGas~ISpFVG--- 239 (374)
.++.++.|++. |+ +-|.|=.. -|..-++.+++|.++ ++.+-+=-|.|.+++..+.+||+.+|-+=+|
T Consensus 242 ~~~~~~~l~~a----g~--d~i~id~a~G~s~~~~~~i~~ik~~~~~~~v~aG~V~t~~~a~~~~~aGad~I~vg~g~Gs 315 (495)
T PTZ00314 242 DIERAAALIEA----GV--DVLVVDSSQGNSIYQIDMIKKLKSNYPHVDIIAGNVVTADQAKNLIDAGADGLRIGMGSGS 315 (495)
T ss_pred HHHHHHHHHHC----CC--CEEEEecCCCCchHHHHHHHHHHhhCCCceEEECCcCCHHHHHHHHHcCCCEEEECCcCCc
Confidence 36777777765 33 44555443 233347788888876 5666666699999999999999998854322
Q ss_pred ----hhh-hhhhcCCCCccchhhhccCCCcHHHHHHHHHHHHHHcCccHHHHH-hccCChhcHHH--hhCCcEecccHHH
Q 017271 240 ----RLR-DWARNHSGDPEIDDALKRGEDPALSLVSKAYNYIHKYGHKSKLMA-AAVRNKQDLFS--LLGVDYIIAPLKV 311 (374)
Q Consensus 240 ----RId-d~~~~~~~d~~~~~~~~~~~d~Gv~~v~~iy~~~k~~g~~T~vLa-AS~Rn~~~i~~--laG~D~lTipp~l 311 (374)
|+- +| | -|-+..+.++.++.++++.+ +++ -.+++..++.. .+|+|.+.+.-.+
T Consensus 316 ~~~t~~~~~~----------------g-~p~~~ai~~~~~~~~~~~v~--vIadGGi~~~~di~kAla~GA~~Vm~G~~~ 376 (495)
T PTZ00314 316 ICITQEVCAV----------------G-RPQASAVYHVARYARERGVP--CIADGGIKNSGDICKALALGADCVMLGSLL 376 (495)
T ss_pred ccccchhccC----------------C-CChHHHHHHHHHHHhhcCCe--EEecCCCCCHHHHHHHHHcCCCEEEECchh
Confidence 221 11 1 24566667777777777633 443 36799999987 5899999877553
No 33
>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]
Probab=83.99 E-value=7.1 Score=38.03 Aligned_cols=97 Identities=15% Similarity=0.127 Sum_probs=65.8
Q ss_pred cCChhHHHHHHHHHHcCceeEEeecCCHHHHHHHHHcCCcEEEechhhhhhhhhcCCCCccchhhhccCCCcHHHHHHHH
Q 017271 193 PSTWQGIEASRLLESEGIQTHLTFVYSFAQAAAAAQAGASVIQIFVGRLRDWARNHSGDPEIDDALKRGEDPALSLVSKA 272 (374)
Q Consensus 193 PaT~eGi~A~~~L~~eGI~vN~TlIFS~~QA~aaa~AGas~ISpFVGRIdd~~~~~~~d~~~~~~~~~~~d~Gv~~v~~i 272 (374)
|-..+-++|+++|.++|..|.--.-=.+--|..-.++||..+=|.-+-|-. .-|+.+-..+
T Consensus 114 PD~~etl~Aae~Lv~eGF~VlPY~~dD~v~arrLee~GcaavMPl~aPIGS-------------------g~G~~n~~~l 174 (262)
T COG2022 114 PDPIETLKAAEQLVKEGFVVLPYTTDDPVLARRLEEAGCAAVMPLGAPIGS-------------------GLGLQNPYNL 174 (262)
T ss_pred CChHHHHHHHHHHHhCCCEEeeccCCCHHHHHHHHhcCceEeccccccccC-------------------CcCcCCHHHH
Confidence 556688999999999999885444444444555558899999887766622 2366665555
Q ss_pred HHHHHHcCccHH-HHHhccCChhcHHH--hhCCcEecccHH
Q 017271 273 YNYIHKYGHKSK-LMAAAVRNKQDLFS--LLGVDYIIAPLK 310 (374)
Q Consensus 273 y~~~k~~g~~T~-vLaAS~Rn~~~i~~--laG~D~lTipp~ 310 (374)
.-++.+. +.- |+=|.+-.+.+... ..|||.+-+.-.
T Consensus 175 ~iiie~a--~VPviVDAGiG~pSdAa~aMElG~DaVL~NTA 213 (262)
T COG2022 175 EIIIEEA--DVPVIVDAGIGTPSDAAQAMELGADAVLLNTA 213 (262)
T ss_pred HHHHHhC--CCCEEEeCCCCChhHHHHHHhcccceeehhhH
Confidence 5555554 333 34577778888876 699999865444
No 34
>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion]
Probab=83.54 E-value=8.3 Score=40.35 Aligned_cols=86 Identities=20% Similarity=0.257 Sum_probs=66.9
Q ss_pred cCCCCeEEEEecCCccCCHHHHHHHHHHHHHHhcCCCCCCCcEEEEecC----ChhHHHHHHHHHHc-Cc----eeEEee
Q 017271 146 KMVPGRVSTEVDARLAYDTHGIIRKVHDLLKLYSEIDVPPERLLFKIPS----TWQGIEASRLLESE-GI----QTHLTF 216 (374)
Q Consensus 146 ~~v~G~VS~EVdp~la~D~e~~I~eA~~L~~l~~~~gv~~~nVlIKIPa----T~eGi~A~~~L~~e-GI----~vN~Tl 216 (374)
..+.|-+|.-++| .++.+.-++-|++|.++ |+ +-|+||=-+ -.++.+-++.++++ ++ +|+.|.
T Consensus 139 ~h~q~~i~YT~sP--vHt~e~yv~~akel~~~----g~--DSIciKDmaGlltP~~ayelVk~iK~~~~~pv~lHtH~Ts 210 (472)
T COG5016 139 AHVQGTISYTTSP--VHTLEYYVELAKELLEM----GV--DSICIKDMAGLLTPYEAYELVKAIKKELPVPVELHTHATS 210 (472)
T ss_pred ceeEEEEEeccCC--cccHHHHHHHHHHHHHc----CC--CEEEeecccccCChHHHHHHHHHHHHhcCCeeEEeccccc
Confidence 3457889999998 58888889999988887 34 889999543 33778888888876 54 556788
Q ss_pred cCCHHHHHHHHHcCCc----EEEechh
Q 017271 217 VYSFAQAAAAAQAGAS----VIQIFVG 239 (374)
Q Consensus 217 IFS~~QA~aaa~AGas----~ISpFVG 239 (374)
=++..-+++|.+||+. .||||-|
T Consensus 211 G~a~m~ylkAvEAGvD~iDTAisp~S~ 237 (472)
T COG5016 211 GMAEMTYLKAVEAGVDGIDTAISPLSG 237 (472)
T ss_pred chHHHHHHHHHHhCcchhhhhhccccC
Confidence 8888999999999974 5677754
No 35
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=81.93 E-value=7.6 Score=39.32 Aligned_cols=124 Identities=15% Similarity=0.117 Sum_probs=80.4
Q ss_pred ccCCHHHHHHHHHHHHHHhcCCCCCCCcEEEEecC----------ChhHHHHHHHHHHcCceeEEeecCCHHHHHHHHHc
Q 017271 160 LAYDTHGIIRKVHDLLKLYSEIDVPPERLLFKIPS----------TWQGIEASRLLESEGIQTHLTFVYSFAQAAAAAQA 229 (374)
Q Consensus 160 la~D~e~~I~eA~~L~~l~~~~gv~~~nVlIKIPa----------T~eGi~A~~~L~~eGI~vN~TlIFS~~QA~aaa~A 229 (374)
-+++.++-|+-|+--.+++ ..=+||+=. ..+-++|+++|.++|..|..-..=++..+.+++++
T Consensus 145 g~~ta~eAv~~a~lare~~-------~~~~iKlEvi~e~~~llpd~~~~v~aa~~L~~~Gf~v~~yc~~d~~~a~~l~~~ 217 (326)
T PRK11840 145 GCYTAEEAVRTLRLAREAG-------GWDLVKLEVLGDAKTLYPDMVETLKATEILVKEGFQVMVYCSDDPIAAKRLEDA 217 (326)
T ss_pred CCCCHHHHHHHHHHHHHhc-------CCCeEEEEEcCCCCCcccCHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHhc
Confidence 4566665555555444443 122777644 33679999999999999988888999999999999
Q ss_pred CCcEEEechhhhhhhhhcCCCCccchhhhccCCCcHHHHHHHHHHHHHHcCccHHHH-HhccCChhcHHH--hhCCcEec
Q 017271 230 GASVIQIFVGRLRDWARNHSGDPEIDDALKRGEDPALSLVSKAYNYIHKYGHKSKLM-AAAVRNKQDLFS--LLGVDYII 306 (374)
Q Consensus 230 Gas~ISpFVGRIdd~~~~~~~d~~~~~~~~~~~d~Gv~~v~~iy~~~k~~g~~T~vL-aAS~Rn~~~i~~--laG~D~lT 306 (374)
|+..+=|.-.-|- ..-|+.+-..+....+. .++.|| .|.+....++.. .+|||-+-
T Consensus 218 g~~avmPl~~pIG-------------------sg~gv~~p~~i~~~~e~--~~vpVivdAGIg~~sda~~AmelGadgVL 276 (326)
T PRK11840 218 GAVAVMPLGAPIG-------------------SGLGIQNPYTIRLIVEG--ATVPVLVDAGVGTASDAAVAMELGCDGVL 276 (326)
T ss_pred CCEEEeecccccc-------------------CCCCCCCHHHHHHHHHc--CCCcEEEeCCCCCHHHHHHHHHcCCCEEE
Confidence 9976667544442 11233222222222222 345555 799999999987 69999875
Q ss_pred ccHHH
Q 017271 307 APLKV 311 (374)
Q Consensus 307 ipp~l 311 (374)
+.-.+
T Consensus 277 ~nSaI 281 (326)
T PRK11840 277 MNTAI 281 (326)
T ss_pred Eccee
Confidence 44333
No 36
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=81.72 E-value=6.8 Score=36.96 Aligned_cols=71 Identities=17% Similarity=0.115 Sum_probs=52.3
Q ss_pred CCHHHHHHHHHHHHHHhcCCCCCCCcEEEEecC-ChhHHHHHHHHHHc--CceeEEeecCCHHHHHHHHHcCCc-EEEec
Q 017271 162 YDTHGIIRKVHDLLKLYSEIDVPPERLLFKIPS-TWQGIEASRLLESE--GIQTHLTFVYSFAQAAAAAQAGAS-VIQIF 237 (374)
Q Consensus 162 ~D~e~~I~eA~~L~~l~~~~gv~~~nVlIKIPa-T~eGi~A~~~L~~e--GI~vN~TlIFS~~QA~aaa~AGas-~ISpF 237 (374)
.|.+..++-++.+++- |+ . +|-|+. |+..++++++|.++ ++.+=+=.|.+.+|+..|.++|+. ++||.
T Consensus 13 ~~~~~a~~ia~al~~g----Gi--~--~iEit~~tp~a~~~I~~l~~~~~~~~vGAGTVl~~e~a~~ai~aGA~FivSP~ 84 (201)
T PRK06015 13 DDVEHAVPLARALAAG----GL--P--AIEITLRTPAALDAIRAVAAEVEEAIVGAGTILNAKQFEDAAKAGSRFIVSPG 84 (201)
T ss_pred CCHHHHHHHHHHHHHC----CC--C--EEEEeCCCccHHHHHHHHHHHCCCCEEeeEeCcCHHHHHHHHHcCCCEEECCC
Confidence 4666666666666654 45 3 344444 55789999999866 688888999999999999999974 67887
Q ss_pred hhh
Q 017271 238 VGR 240 (374)
Q Consensus 238 VGR 240 (374)
+++
T Consensus 85 ~~~ 87 (201)
T PRK06015 85 TTQ 87 (201)
T ss_pred CCH
Confidence 543
No 37
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=81.29 E-value=25 Score=34.41 Aligned_cols=122 Identities=18% Similarity=0.199 Sum_probs=78.1
Q ss_pred CeEEEEecCCccCCHHHHHHHHHHHHHHhcCCCCCCCcEEEEe-------cCChh-----HHHHHHHHHHc-CceeEEee
Q 017271 150 GRVSTEVDARLAYDTHGIIRKVHDLLKLYSEIDVPPERLLFKI-------PSTWQ-----GIEASRLLESE-GIQTHLTF 216 (374)
Q Consensus 150 G~VS~EVdp~la~D~e~~I~eA~~L~~l~~~~gv~~~nVlIKI-------PaT~e-----Gi~A~~~L~~e-GI~vN~Tl 216 (374)
|+..+=+-|...+|.+..++-|++|.++. ..++.|= |-.|. |++.++++..+ |+.+ +|-
T Consensus 26 ~~~~~iaGPCsie~~~~~~~~A~~lk~~g-------~~~~r~~~~kpRTs~~s~~G~g~~gl~~l~~~~~~~Gl~~-~te 97 (266)
T PRK13398 26 EEKIIIAGPCAVESEEQMVKVAEKLKELG-------VHMLRGGAFKPRTSPYSFQGLGEEGLKILKEVGDKYNLPV-VTE 97 (266)
T ss_pred CCEEEEEeCCcCCCHHHHHHHHHHHHHcC-------CCEEEEeeecCCCCCCccCCcHHHHHHHHHHHHHHcCCCE-EEe
Confidence 57778888888899999999999999974 3477766 66664 57777666655 9999 788
Q ss_pred cCCHHHHHHHHHcCCcEEEechhhhhhh--hhcCCCCccchhhhccCCCcHHHHHHHHHHHHHHcCc
Q 017271 217 VYSFAQAAAAAQAGASVIQIFVGRLRDW--ARNHSGDPEIDDALKRGEDPALSLVSKAYNYIHKYGH 281 (374)
Q Consensus 217 IFS~~QA~aaa~AGas~ISpFVGRIdd~--~~~~~~d~~~~~~~~~~~d~Gv~~v~~iy~~~k~~g~ 281 (374)
+|...++..+++. +.++.+=-.-+.+. .+.. ......-.++.|....+.-+..+.++++..|.
T Consensus 98 ~~d~~~~~~l~~~-vd~~kIga~~~~n~~LL~~~-a~~gkPV~lk~G~~~s~~e~~~A~e~i~~~Gn 162 (266)
T PRK13398 98 VMDTRDVEEVADY-ADMLQIGSRNMQNFELLKEV-GKTKKPILLKRGMSATLEEWLYAAEYIMSEGN 162 (266)
T ss_pred eCChhhHHHHHHh-CCEEEECcccccCHHHHHHH-hcCCCcEEEeCCCCCCHHHHHHHHHHHHhcCC
Confidence 9999999999876 44443322222221 1110 00000011233433356677777777777654
No 38
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=81.27 E-value=7.9 Score=36.66 Aligned_cols=72 Identities=19% Similarity=0.166 Sum_probs=53.1
Q ss_pred cCCHHHHHHHHHHHHHHhcCCCCCCCcEEEEec-CChhHHHHHHHHHHc--CceeEEeecCCHHHHHHHHHcCCc-EEEe
Q 017271 161 AYDTHGIIRKVHDLLKLYSEIDVPPERLLFKIP-STWQGIEASRLLESE--GIQTHLTFVYSFAQAAAAAQAGAS-VIQI 236 (374)
Q Consensus 161 a~D~e~~I~eA~~L~~l~~~~gv~~~nVlIKIP-aT~eGi~A~~~L~~e--GI~vN~TlIFS~~QA~aaa~AGas-~ISp 236 (374)
..|.++.++-++.+.+- |+ + +|-|+ .|++|++++++|.++ ++.+=+-.|.+.+|+..|.+||+. ++||
T Consensus 23 ~~~~~~a~~i~~al~~~----Gi--~--~iEitl~~~~~~~~I~~l~~~~p~~~IGAGTVl~~~~a~~a~~aGA~FivsP 94 (212)
T PRK05718 23 INKLEDAVPLAKALVAG----GL--P--VLEVTLRTPAALEAIRLIAKEVPEALIGAGTVLNPEQLAQAIEAGAQFIVSP 94 (212)
T ss_pred cCCHHHHHHHHHHHHHc----CC--C--EEEEecCCccHHHHHHHHHHHCCCCEEEEeeccCHHHHHHHHHcCCCEEECC
Confidence 35666666666666553 44 2 34444 456899999999876 688889999999999999999985 5677
Q ss_pred chhh
Q 017271 237 FVGR 240 (374)
Q Consensus 237 FVGR 240 (374)
.+.+
T Consensus 95 ~~~~ 98 (212)
T PRK05718 95 GLTP 98 (212)
T ss_pred CCCH
Confidence 6655
No 39
>cd03315 MLE_like Muconate lactonizing enzyme (MLE) like subgroup of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and residues that can function as general acid/base catalysts, a Lys-X-Lys motif and another conserved lysine. Despite these conserved residues, the members of the MLE subgroup, like muconate lactonizing enzyme, o-succinylbenzoate synthase (OSBS) and N-acylamino acid racemase (NAAAR), catalyze different reactions.
Probab=81.02 E-value=30 Score=33.02 Aligned_cols=113 Identities=16% Similarity=0.160 Sum_probs=78.9
Q ss_pred HHHHhcCCCCeEEEEecCCccCCHHHHHHHHHHHHHHhcCCCCCCCcEEEEecCChhHHHHHHHHHHc-CceeEEee-cC
Q 017271 141 GGDLAKMVPGRVSTEVDARLAYDTHGIIRKVHDLLKLYSEIDVPPERLLFKIPSTWQGIEASRLLESE-GIQTHLTF-VY 218 (374)
Q Consensus 141 g~eil~~v~G~VS~EVdp~la~D~e~~I~eA~~L~~l~~~~gv~~~nVlIKIPaT~eGi~A~~~L~~e-GI~vN~Tl-IF 218 (374)
.+.+.+.++..+.+=||++-+.+.++.++-++.+... |+ .+|--|....-++.+++|.+. +|++-+.- ++
T Consensus 119 v~~vr~~~g~~~~l~vDan~~~~~~~a~~~~~~l~~~----~i----~~iEeP~~~~d~~~~~~l~~~~~ipia~dE~~~ 190 (265)
T cd03315 119 VAALREAVGDDAELRVDANRGWTPKQAIRALRALEDL----GL----DYVEQPLPADDLEGRAALARATDTPIMADESAF 190 (265)
T ss_pred HHHHHHhcCCCCEEEEeCCCCcCHHHHHHHHHHHHhc----CC----CEEECCCCcccHHHHHHHHhhCCCCEEECCCCC
Confidence 3455555555677888888888876666665555442 22 367888876667777777766 77766554 78
Q ss_pred CHHHHHHHHHcC-CcEEEechhhhhhhhhcCCCCccchhhhccCCCcHHHHHHHHHHHHHHcCccH
Q 017271 219 SFAQAAAAAQAG-ASVIQIFVGRLRDWARNHSGDPEIDDALKRGEDPALSLVSKAYNYIHKYGHKS 283 (374)
Q Consensus 219 S~~QA~aaa~AG-as~ISpFVGRIdd~~~~~~~d~~~~~~~~~~~d~Gv~~v~~iy~~~k~~g~~T 283 (374)
++.++....+.| +.++.|=+.++ -|+.-++++.++-+.+|.++
T Consensus 191 ~~~~~~~~i~~~~~d~v~~k~~~~----------------------GGi~~~~~~~~~A~~~gi~~ 234 (265)
T cd03315 191 TPHDAFRELALGAADAVNIKTAKT----------------------GGLTKAQRVLAVAEALGLPV 234 (265)
T ss_pred CHHHHHHHHHhCCCCEEEEecccc----------------------cCHHHHHHHHHHHHHcCCcE
Confidence 999998888775 67777766554 27888888888888887653
No 40
>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....
Probab=80.99 E-value=2.7 Score=38.40 Aligned_cols=86 Identities=21% Similarity=0.247 Sum_probs=60.1
Q ss_pred hHHHHHHHHHHcCceeEEeecCCHHHHHHHHHcCCcEEEechhhhhhhhhcCCCCccchhhhccCCCcHHHHHHHHHHHH
Q 017271 197 QGIEASRLLESEGIQTHLTFVYSFAQAAAAAQAGASVIQIFVGRLRDWARNHSGDPEIDDALKRGEDPALSLVSKAYNYI 276 (374)
Q Consensus 197 eGi~A~~~L~~eGI~vN~TlIFS~~QA~aaa~AGas~ISpFVGRIdd~~~~~~~d~~~~~~~~~~~d~Gv~~v~~iy~~~ 276 (374)
+-++++++...+..++-+ -+.+.+|+..|+++|+.+|- +|. .....++++.+.+
T Consensus 68 ~av~~~~~~~~~~~~I~V-Ev~~~ee~~ea~~~g~d~I~-----lD~--------------------~~~~~~~~~v~~l 121 (169)
T PF01729_consen 68 EAVKAARQAAPEKKKIEV-EVENLEEAEEALEAGADIIM-----LDN--------------------MSPEDLKEAVEEL 121 (169)
T ss_dssp HHHHHHHHHSTTTSEEEE-EESSHHHHHHHHHTT-SEEE-----EES---------------------CHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCceEEE-EcCCHHHHHHHHHhCCCEEE-----ecC--------------------cCHHHHHHHHHHH
Confidence 445555555544433322 56789999999999977662 332 2347788888888
Q ss_pred HHcCccHHHHHhccCChhcHHH--hhCCcEeccc
Q 017271 277 HKYGHKSKLMAAAVRNKQDLFS--LLGVDYIIAP 308 (374)
Q Consensus 277 k~~g~~T~vLaAS~Rn~~~i~~--laG~D~lTip 308 (374)
+..+.+.++.++..-|.+++.+ ..|+|++-+.
T Consensus 122 ~~~~~~v~ie~SGGI~~~ni~~ya~~gvD~isvg 155 (169)
T PF01729_consen 122 RELNPRVKIEASGGITLENIAEYAKTGVDVISVG 155 (169)
T ss_dssp HHHTTTSEEEEESSSSTTTHHHHHHTT-SEEEEC
T ss_pred hhcCCcEEEEEECCCCHHHHHHHHhcCCCEEEcC
Confidence 8877787777888889999987 6899998654
No 41
>PRK05265 pyridoxine 5'-phosphate synthase; Provisional
Probab=80.99 E-value=25 Score=34.16 Aligned_cols=93 Identities=22% Similarity=0.264 Sum_probs=69.9
Q ss_pred hhhHHHHHHHHhcCCCCeEEEEecCCccCCHHHHHHHHHHHHHHhcCCCCCCCcEEEEecCCh-----h-H---------
Q 017271 134 NKALVNVGGDLAKMVPGRVSTEVDARLAYDTHGIIRKVHDLLKLYSEIDVPPERLLFKIPSTW-----Q-G--------- 198 (374)
Q Consensus 134 ~~~~v~~g~eil~~v~G~VS~EVdp~la~D~e~~I~eA~~L~~l~~~~gv~~~nVlIKIPaT~-----e-G--------- 198 (374)
++++. .+.+.+..++-+|..| +++|++-|+++ +|.-+-=+|-.. + |
T Consensus 54 d~Dv~----~L~~~~~~~lNlE~a~-----~~em~~ia~~~----------kP~~vtLVPE~r~E~TTegGldv~~~~~~ 114 (239)
T PRK05265 54 DRDVR----LLRETLKTELNLEMAA-----TEEMLDIALEV----------KPHQVTLVPEKREELTTEGGLDVAGQFDK 114 (239)
T ss_pred HHHHH----HHHHhcCCCEEeccCC-----CHHHHHHHHHC----------CCCEEEECCCCCCCccCCccchhhcCHHH
Confidence 34555 3444455588899976 57788887665 355555577643 2 3
Q ss_pred -HHHHHHHHHcCceeEEeecCCHHHHHHHHHcCCcEEEechhhhhhhh
Q 017271 199 -IEASRLLESEGIQTHLTFVYSFAQAAAAAQAGASVIQIFVGRLRDWA 245 (374)
Q Consensus 199 -i~A~~~L~~eGI~vN~TlIFS~~QA~aaa~AGas~ISpFVGRIdd~~ 245 (374)
-+.++.|.+.||+|-+=.==.++|..+|.+.|+..|=.+.|...+.+
T Consensus 115 l~~~i~~L~~~gIrVSLFidP~~~qi~~A~~~GAd~VELhTG~yA~a~ 162 (239)
T PRK05265 115 LKPAIARLKDAGIRVSLFIDPDPEQIEAAAEVGADRIELHTGPYADAK 162 (239)
T ss_pred HHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhCcCEEEEechhhhcCC
Confidence 35689999999999888888999999999999999999999987753
No 42
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=80.74 E-value=14 Score=38.69 Aligned_cols=128 Identities=17% Similarity=0.196 Sum_probs=82.1
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCcEEEEec--CChhHHHHHHHHHHc--CceeEEeecCCHHHHHHHHHcCCcEEEechhh
Q 017271 165 HGIIRKVHDLLKLYSEIDVPPERLLFKIP--STWQGIEASRLLESE--GIQTHLTFVYSFAQAAAAAQAGASVIQIFVGR 240 (374)
Q Consensus 165 e~~I~eA~~L~~l~~~~gv~~~nVlIKIP--aT~eGi~A~~~L~~e--GI~vN~TlIFS~~QA~aaa~AGas~ISpFVGR 240 (374)
+...+++..|++.. + +-|.|=.. -+..-++.++++.+. .+.+-+--|.+.++|..+.++|+..|-.=+|.
T Consensus 223 ~~~~~r~~~L~~aG----~--d~I~vd~a~g~~~~~~~~i~~i~~~~~~~~vi~G~v~t~~~a~~l~~aGad~i~vg~g~ 296 (450)
T TIGR01302 223 EFDKERAEALVKAG----V--DVIVIDSSHGHSIYVIDSIKEIKKTYPDLDIIAGNVATAEQAKALIDAGADGLRVGIGP 296 (450)
T ss_pred hhHHHHHHHHHHhC----C--CEEEEECCCCcHhHHHHHHHHHHHhCCCCCEEEEeCCCHHHHHHHHHhCCCEEEECCCC
Confidence 34567777777752 3 44555442 233457788888877 67777888999999999999999887543321
Q ss_pred --hhhhhhcCCCCccchhhhccCCCcHHHHHHHHHHHHHHcCccHHHHH-hccCChhcHHH--hhCCcEecccHHH
Q 017271 241 --LRDWARNHSGDPEIDDALKRGEDPALSLVSKAYNYIHKYGHKSKLMA-AAVRNKQDLFS--LLGVDYIIAPLKV 311 (374)
Q Consensus 241 --Idd~~~~~~~d~~~~~~~~~~~d~Gv~~v~~iy~~~k~~g~~T~vLa-AS~Rn~~~i~~--laG~D~lTipp~l 311 (374)
+... + ....-..|-+..+.++.++.++++.+ |++ -.+|+..++.. .+|||.+.+.-.+
T Consensus 297 G~~~~t-~----------~~~~~g~p~~~~i~~~~~~~~~~~vp--viadGGi~~~~di~kAla~GA~~V~~G~~~ 359 (450)
T TIGR01302 297 GSICTT-R----------IVAGVGVPQITAVYDVAEYAAQSGIP--VIADGGIRYSGDIVKALAAGADAVMLGSLL 359 (450)
T ss_pred CcCCcc-c----------eecCCCccHHHHHHHHHHHHhhcCCe--EEEeCCCCCHHHHHHHHHcCCCEEEECchh
Confidence 1110 0 00000124556666676666666533 444 36999999987 5899999887553
No 43
>cd03321 mandelate_racemase Mandelate racemase (MR) catalyzes the Mg2+-dependent 1,1-proton transfer reaction that interconverts the enantiomers of mandelic acid. MR is the first enzyme in the bacterial pathway that converts mandelic acid to benzoic acid and allows this pathway to utilize either enantiomer of mandelate. MR belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=80.64 E-value=26 Score=35.20 Aligned_cols=113 Identities=12% Similarity=0.038 Sum_probs=83.2
Q ss_pred HHHHhcCCCCeEEEEecCCccCCHHHHHHHHHHHHHHhcCCCCCCCcEEEEecCChhHHHHHHHHHHc-CceeEEee-cC
Q 017271 141 GGDLAKMVPGRVSTEVDARLAYDTHGIIRKVHDLLKLYSEIDVPPERLLFKIPSTWQGIEASRLLESE-GIQTHLTF-VY 218 (374)
Q Consensus 141 g~eil~~v~G~VS~EVdp~la~D~e~~I~eA~~L~~l~~~~gv~~~nVlIKIPaT~eGi~A~~~L~~e-GI~vN~Tl-IF 218 (374)
.+.+.+.+...+.+=||++-+.+.+..++-++++..+ .-.+|-=|.....+...++|.+. +|++-+.- ++
T Consensus 176 v~air~~~g~~~~l~vDaN~~~~~~~A~~~~~~l~~~--------~i~~iEeP~~~~d~~~~~~l~~~~~ipia~~E~~~ 247 (355)
T cd03321 176 VRSIRQAVGDGVGLMVDYNQSLTVPEAIERGQALDQE--------GLTWIEEPTLQHDYEGHARIASALRTPVQMGENWL 247 (355)
T ss_pred HHHHHHhhCCCCEEEEeCCCCcCHHHHHHHHHHHHcC--------CCCEEECCCCCcCHHHHHHHHHhcCCCEEEcCCCc
Confidence 3455555655688889998888887766666666442 23577778877777777888776 78887764 57
Q ss_pred CHHHHHHHHHcC-CcEEEechhhhhhhhhcCCCCccchhhhccCCCcHHHHHHHHHHHHHHcCccH
Q 017271 219 SFAQAAAAAQAG-ASVIQIFVGRLRDWARNHSGDPEIDDALKRGEDPALSLVSKAYNYIHKYGHKS 283 (374)
Q Consensus 219 S~~QA~aaa~AG-as~ISpFVGRIdd~~~~~~~d~~~~~~~~~~~d~Gv~~v~~iy~~~k~~g~~T 283 (374)
++.+.....+.| +.++.|=+.++ -|+..++++.++-+.+|.+.
T Consensus 248 ~~~~~~~~i~~~~~d~i~~~~~~~----------------------GGit~~~~ia~~A~~~gi~~ 291 (355)
T cd03321 248 GPEEMFKALSAGACDLVMPDLMKI----------------------GGVTGWLRASALAEQAGIPM 291 (355)
T ss_pred CHHHHHHHHHhCCCCeEecCHhhh----------------------CCHHHHHHHHHHHHHcCCee
Confidence 999999888875 67887777665 27888899999999988764
No 44
>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI. TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.
Probab=80.21 E-value=33 Score=30.18 Aligned_cols=97 Identities=15% Similarity=0.170 Sum_probs=59.6
Q ss_pred HHHHHHHHHcCceeEEeecCCHHHHHHHHHcCCcEEEechhhhhhhhhcCCCCccchhhhccCCCcHHHHHHHHHHHHHH
Q 017271 199 IEASRLLESEGIQTHLTFVYSFAQAAAAAQAGASVIQIFVGRLRDWARNHSGDPEIDDALKRGEDPALSLVSKAYNYIHK 278 (374)
Q Consensus 199 i~A~~~L~~eGI~vN~TlIFS~~QA~aaa~AGas~ISpFVGRIdd~~~~~~~d~~~~~~~~~~~d~Gv~~v~~iy~~~k~ 278 (374)
...++++...|..+-++ +.+.+++..+.+.|++|+. ++.+..-..+ .+ .....|+..++++.+.
T Consensus 85 ~~~~~~~~~~~~~~g~~-~~t~~~~~~~~~~g~d~i~--~~~~~~~~~~-~~---------~~~~~~~~~~~~~~~~--- 148 (196)
T cd00564 85 VAEARALLGPDLIIGVS-THSLEEALRAEELGADYVG--FGPVFPTPTK-PG---------AGPPLGLELLREIAEL--- 148 (196)
T ss_pred HHHHHHHcCCCCEEEee-CCCHHHHHHHhhcCCCEEE--ECCccCCCCC-CC---------CCCCCCHHHHHHHHHh---
Confidence 34455555556666555 3688999999999999884 3333221100 00 0012356666655443
Q ss_pred cCccHHHHHhccCChhcHHH--hhCCcEecccHHHHH
Q 017271 279 YGHKSKLMAAAVRNKQDLFS--LLGVDYIIAPLKVLQ 313 (374)
Q Consensus 279 ~g~~T~vLaAS~Rn~~~i~~--laG~D~lTipp~ll~ 313 (374)
.+..+++++.-+.+++.+ .+|+|.+.+...++.
T Consensus 149 --~~~pv~a~GGi~~~~i~~~~~~Ga~~i~~g~~i~~ 183 (196)
T cd00564 149 --VEIPVVAIGGITPENAAEVLAAGADGVAVISAITG 183 (196)
T ss_pred --CCCCEEEECCCCHHHHHHHHHcCCCEEEEehHhhc
Confidence 346677777777777766 589999988877653
No 45
>cd00003 PNPsynthase Pyridoxine 5'-phosphate (PNP) synthase domain; pyridoxal 5'-phosphate is the active form of vitamin B6 that acts as an essential, ubiquitous coenzyme in amino acid metabolism. In bacteria, formation of pyridoxine 5'-phosphate is a step in the biosynthesis of vitamin B6. PNP synthase, a homooctameric enzyme, catalyzes the final step in PNP biosynthesis, the condensation of 1-amino-acetone 3-phosphate and 1-deoxy-D-xylulose 5-phosphate. PNP synthase adopts a TIM barrel topology, intersubunit contacts are mediated by three ''extra'' helices, generating a tetramer of symmetric dimers with shared active sites; the open state has been proposed to accept substrates and to release products, while most of the catalytic events are likely to occur in the closed state; a hydrophilic channel running through the center of the barrel was identified as the essential structural feature that enables PNP synthase to release water molecules produced during the reaction from the closed,
Probab=79.88 E-value=15 Score=35.70 Aligned_cols=87 Identities=18% Similarity=0.255 Sum_probs=67.8
Q ss_pred HhcCCCCeEEEEecCCccCCHHHHHHHHHHHHHHhcCCCCCCCcEEEEecCCh-----h-H----------HHHHHHHHH
Q 017271 144 LAKMVPGRVSTEVDARLAYDTHGIIRKVHDLLKLYSEIDVPPERLLFKIPSTW-----Q-G----------IEASRLLES 207 (374)
Q Consensus 144 il~~v~G~VS~EVdp~la~D~e~~I~eA~~L~~l~~~~gv~~~nVlIKIPaT~-----e-G----------i~A~~~L~~ 207 (374)
+.+.+..++-+|..| +++|++-|.++ +|.-+-=+|-.. + | -++++.|.+
T Consensus 57 L~~~~~~~lNlE~a~-----t~em~~ia~~~----------kP~~vtLVPEkr~E~TTegGldv~~~~~~l~~~i~~l~~ 121 (234)
T cd00003 57 LRELVRTELNLEMAP-----TEEMLEIALEV----------KPHQVTLVPEKREELTTEGGLDVAGQAEKLKPIIERLKD 121 (234)
T ss_pred HHHHcCCCEEeccCC-----CHHHHHHHHHC----------CCCEEEECCCCCCCccCCccchhhcCHHHHHHHHHHHHH
Confidence 334445688899977 77888887654 355555577633 3 3 356899999
Q ss_pred cCceeEEeecCCHHHHHHHHHcCCcEEEechhhhhhhh
Q 017271 208 EGIQTHLTFVYSFAQAAAAAQAGASVIQIFVGRLRDWA 245 (374)
Q Consensus 208 eGI~vN~TlIFS~~QA~aaa~AGas~ISpFVGRIdd~~ 245 (374)
.||+|-+..==.++|..+|++.|+..|=.+-|...+.+
T Consensus 122 ~gI~VSLFiDPd~~qi~~A~~~GAd~VELhTG~Ya~a~ 159 (234)
T cd00003 122 AGIRVSLFIDPDPEQIEAAKEVGADRVELHTGPYANAY 159 (234)
T ss_pred CCCEEEEEeCCCHHHHHHHHHhCcCEEEEechhhhcCC
Confidence 99999999999999999999999999999999987754
No 46
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=79.22 E-value=3.9 Score=40.24 Aligned_cols=86 Identities=16% Similarity=0.083 Sum_probs=58.7
Q ss_pred HHHHHHHHHc-C-ceeEEeecCCHHHHHHHHHcCCcEEEechhhhhhhhhcCCCCccchhhhccCCCcHHHHHHHHHHHH
Q 017271 199 IEASRLLESE-G-IQTHLTFVYSFAQAAAAAQAGASVIQIFVGRLRDWARNHSGDPEIDDALKRGEDPALSLVSKAYNYI 276 (374)
Q Consensus 199 i~A~~~L~~e-G-I~vN~TlIFS~~QA~aaa~AGas~ISpFVGRIdd~~~~~~~d~~~~~~~~~~~d~Gv~~v~~iy~~~ 276 (374)
-++++++++. + .+--..-+=+++|+..|+++|+++|. +| +...+.++++.++.
T Consensus 169 ~~~v~~~k~~~p~~~~I~VEv~tleea~~A~~~GaDiI~-----LD--------------------n~~~e~l~~~v~~~ 223 (273)
T PRK05848 169 KEFIQHARKNIPFTAKIEIECESLEEAKNAMNAGADIVM-----CD--------------------NMSVEEIKEVVAYR 223 (273)
T ss_pred HHHHHHHHHhCCCCceEEEEeCCHHHHHHHHHcCCCEEE-----EC--------------------CCCHHHHHHHHHHh
Confidence 3556666654 2 22234467799999999999999887 22 13567788888766
Q ss_pred HHcCccHHHHHhccCChhcHHH--hhCCcEecccH
Q 017271 277 HKYGHKSKLMAAAVRNKQDLFS--LLGVDYIIAPL 309 (374)
Q Consensus 277 k~~g~~T~vLaAS~Rn~~~i~~--laG~D~lTipp 309 (374)
+....+.++.++..-+.+++.+ .+|+|++.+.-
T Consensus 224 ~~~~~~~~ieAsGgIt~~ni~~ya~~GvD~IsvG~ 258 (273)
T PRK05848 224 NANYPHVLLEASGNITLENINAYAKSGVDAISSGS 258 (273)
T ss_pred hccCCCeEEEEECCCCHHHHHHHHHcCCCEEEeCh
Confidence 5433445555555568899987 68999997664
No 47
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=78.91 E-value=25 Score=35.96 Aligned_cols=133 Identities=14% Similarity=0.193 Sum_probs=83.6
Q ss_pred ccCCHHHHHHHHHHHHHHhcCCCCCCCcEEEEecCChhH-HHHHHHHHHcCceeEEeecCC---HHHHHHHHHcCCcEEE
Q 017271 160 LAYDTHGIIRKVHDLLKLYSEIDVPPERLLFKIPSTWQG-IEASRLLESEGIQTHLTFVYS---FAQAAAAAQAGASVIQ 235 (374)
Q Consensus 160 la~D~e~~I~eA~~L~~l~~~~gv~~~nVlIKIPaT~eG-i~A~~~L~~eGI~vN~TlIFS---~~QA~aaa~AGas~IS 235 (374)
..+++++.++-++.|.++ || +.|=+=+|+..+. .++++.+.+.|.++.++. ++ ......+.++|+..|-
T Consensus 21 ~~~s~e~k~~ia~~L~~~----GV--~~IE~G~p~~~~~~~e~i~~i~~~~~~~~i~~-~~r~~~~di~~a~~~g~~~i~ 93 (378)
T PRK11858 21 VVFTNEEKLAIARMLDEI----GV--DQIEAGFPAVSEDEKEAIKAIAKLGLNASILA-LNRAVKSDIDASIDCGVDAVH 93 (378)
T ss_pred CCCCHHHHHHHHHHHHHh----CC--CEEEEeCCCcChHHHHHHHHHHhcCCCeEEEE-EcccCHHHHHHHHhCCcCEEE
Confidence 567787777777766665 56 6677778876654 588899988887765443 34 5566777889999888
Q ss_pred echhhhhhhhhcCCCCccchhhhccCCCcHHHHHHHHHHHHHHcCccHHH--HHhccCChhcHHH------hhCCcEecc
Q 017271 236 IFVGRLRDWARNHSGDPEIDDALKRGEDPALSLVSKAYNYIHKYGHKSKL--MAAAVRNKQDLFS------LLGVDYIIA 307 (374)
Q Consensus 236 pFVGRIdd~~~~~~~d~~~~~~~~~~~d~Gv~~v~~iy~~~k~~g~~T~v--LaAS~Rn~~~i~~------laG~D~lTi 307 (374)
.|++-=+-+...+.+ ...+..+..+.++.++.++.|....+ +-++-.+.+.+.+ .+|+|.+.+
T Consensus 94 i~~~~Sd~h~~~~~~---------~s~~~~l~~~~~~v~~a~~~G~~v~~~~ed~~r~~~~~l~~~~~~~~~~Ga~~I~l 164 (378)
T PRK11858 94 IFIATSDIHIKHKLK---------KTREEVLERMVEAVEYAKDHGLYVSFSAEDASRTDLDFLIEFAKAAEEAGADRVRF 164 (378)
T ss_pred EEEcCCHHHHHHHhC---------CCHHHHHHHHHHHHHHHHHCCCeEEEEeccCCCCCHHHHHHHHHHHHhCCCCEEEE
Confidence 887644333222111 11124677888888899988876432 1222234444432 468777644
Q ss_pred c
Q 017271 308 P 308 (374)
Q Consensus 308 p 308 (374)
+
T Consensus 165 ~ 165 (378)
T PRK11858 165 C 165 (378)
T ss_pred e
Confidence 3
No 48
>TIGR00559 pdxJ pyridoxine 5'-phosphate synthase. PdxJ is required in the biosynthesis of pyridoxine (vitamin B6), a precursor to the enzyme cofactor pyridoxal phosphate. ECOCYC describes the predicted reaction equation as 1-amino-propan-2-one-3-phosphate + deoxyxylulose-5-phosphate = pyridoxine-5'-phosphate. The product of that reaction is oxidized by PdxH to pyridoxal 5'-phosphate.
Probab=78.36 E-value=28 Score=33.81 Aligned_cols=88 Identities=24% Similarity=0.329 Sum_probs=67.2
Q ss_pred HHhcCCCCeEEEEecCCccCCHHHHHHHHHHHHHHhcCCCCCCCcEEEEecCCh-----h-H----------HHHHHHHH
Q 017271 143 DLAKMVPGRVSTEVDARLAYDTHGIIRKVHDLLKLYSEIDVPPERLLFKIPSTW-----Q-G----------IEASRLLE 206 (374)
Q Consensus 143 eil~~v~G~VS~EVdp~la~D~e~~I~eA~~L~~l~~~~gv~~~nVlIKIPaT~-----e-G----------i~A~~~L~ 206 (374)
.+.+.+..++-+|..| +++|++-|.++ +|.-+-=+|-.. + | -++++.|.
T Consensus 56 ~l~~~~~~~lNlE~a~-----~~emi~ia~~v----------kP~~vtLVPEkr~ElTTegGldv~~~~~~l~~~i~~l~ 120 (237)
T TIGR00559 56 DLKEALTTPFNIEMAP-----TEEMIRIAEEI----------KPEQVTLVPEARDEVTTEGGLDVARLKDKLCELVKRFH 120 (237)
T ss_pred HHHHHcCCCEEeccCC-----CHHHHHHHHHc----------CCCEEEECCCCCCCccCCcCchhhhCHHHHHHHHHHHH
Confidence 3444455688899976 67888887655 244445577633 3 3 35689999
Q ss_pred HcCceeEEeecCCHHHHHHHHHcCCcEEEechhhhhhhh
Q 017271 207 SEGIQTHLTFVYSFAQAAAAAQAGASVIQIFVGRLRDWA 245 (374)
Q Consensus 207 ~eGI~vN~TlIFS~~QA~aaa~AGas~ISpFVGRIdd~~ 245 (374)
+.||+|-+=.==.++|..+|.+.|+..|=.+.|...+.+
T Consensus 121 ~~gI~VSLFiDP~~~qi~~A~~~GAd~VELhTG~YA~a~ 159 (237)
T TIGR00559 121 AAGIEVSLFIDADKDQISAAAEVGADRIEIHTGPYANAY 159 (237)
T ss_pred HCCCEEEEEeCCCHHHHHHHHHhCcCEEEEechhhhcCC
Confidence 999999888888999999999999999999999987744
No 49
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=78.22 E-value=29 Score=31.52 Aligned_cols=103 Identities=15% Similarity=0.089 Sum_probs=63.9
Q ss_pred cCChhHHHHHHHHHHcCceeEEeecCCHHHHHHHHHcCCcEEEechhhhhhhhhcCCCCccchhhhccCCCcHHHHHHHH
Q 017271 193 PSTWQGIEASRLLESEGIQTHLTFVYSFAQAAAAAQAGASVIQIFVGRLRDWARNHSGDPEIDDALKRGEDPALSLVSKA 272 (374)
Q Consensus 193 PaT~eGi~A~~~L~~eGI~vN~TlIFS~~QA~aaa~AGas~ISpFVGRIdd~~~~~~~d~~~~~~~~~~~d~Gv~~v~~i 272 (374)
|....-...++.+...|+.+-++ +-+.+++..+.+.|++||.. |.+.....+ .+ . ....|+..++++
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~g~~-~~t~~e~~~a~~~gaD~v~~--~~~~~~~~~-~~-------~--~~~~g~~~~~~~ 154 (212)
T PRK00043 88 GQDDLPVADARALLGPDAIIGLS-THTLEEAAAALAAGADYVGV--GPIFPTPTK-KD-------A--KAPQGLEGLREI 154 (212)
T ss_pred CcccCCHHHHHHHcCCCCEEEEe-CCCHHHHHHHhHcCCCEEEE--CCccCCCCC-CC-------C--CCCCCHHHHHHH
Confidence 44332345556665666665444 45899999999999999942 333221100 00 0 001257777776
Q ss_pred HHHHHHcCccHHHHHhccCChhcHHH--hhCCcEecccHHHH
Q 017271 273 YNYIHKYGHKSKLMAAAVRNKQDLFS--LLGVDYIIAPLKVL 312 (374)
Q Consensus 273 y~~~k~~g~~T~vLaAS~Rn~~~i~~--laG~D~lTipp~ll 312 (374)
.+.++ ++.|++.+.-+.+++.+ .+|+|.+.+.-.++
T Consensus 155 ~~~~~----~~~v~a~GGI~~~~i~~~~~~Ga~gv~~gs~i~ 192 (212)
T PRK00043 155 RAAVG----DIPIVAIGGITPENAPEVLEAGADGVAVVSAIT 192 (212)
T ss_pred HHhcC----CCCEEEECCcCHHHHHHHHHcCCCEEEEeHHhh
Confidence 55442 37788888889988876 58999998876665
No 50
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=77.76 E-value=11 Score=40.12 Aligned_cols=126 Identities=14% Similarity=0.138 Sum_probs=76.6
Q ss_pred HHHHHHHHHHHHhcCCCCCCCcEEEEecCChhH----HHHHHHHHHc-C--ceeEEeecCCHHHHHHHHHcCCcEEEe--
Q 017271 166 GIIRKVHDLLKLYSEIDVPPERLLFKIPSTWQG----IEASRLLESE-G--IQTHLTFVYSFAQAAAAAQAGASVIQI-- 236 (374)
Q Consensus 166 ~~I~eA~~L~~l~~~~gv~~~nVlIKIPaT~eG----i~A~~~L~~e-G--I~vN~TlIFS~~QA~aaa~AGas~ISp-- 236 (374)
+..+.++.|++. |+ +-+. |+.+..- +++++.+.+. + +.+-+--|.+.++|..+.+||+..|=+
T Consensus 242 ~~~~ra~~Lv~a----Gv--d~i~--vd~a~g~~~~~~~~i~~ir~~~~~~~~V~aGnV~t~e~a~~li~aGAd~I~vg~ 313 (502)
T PRK07107 242 DYAERVPALVEA----GA--DVLC--IDSSEGYSEWQKRTLDWIREKYGDSVKVGAGNVVDREGFRYLAEAGADFVKVGI 313 (502)
T ss_pred hHHHHHHHHHHh----CC--CeEe--ecCcccccHHHHHHHHHHHHhCCCCceEEeccccCHHHHHHHHHcCCCEEEECC
Confidence 456777777775 34 4444 4533332 7888999885 4 555565699999999999999987533
Q ss_pred chhhhhhhhhcCCCCccchhhhccCCCcHHHHHHHHHH----HHHHcCccHHHHH-hccCChhcHHH--hhCCcEecccH
Q 017271 237 FVGRLRDWARNHSGDPEIDDALKRGEDPALSLVSKAYN----YIHKYGHKSKLMA-AAVRNKQDLFS--LLGVDYIIAPL 309 (374)
Q Consensus 237 FVGRIdd~~~~~~~d~~~~~~~~~~~d~Gv~~v~~iy~----~~k~~g~~T~vLa-AS~Rn~~~i~~--laG~D~lTipp 309 (374)
=-|.+...-. .. ..| .|-+..+.++.+ |++++|.+..||+ ..+|+..++.. .+|+|.+.+.-
T Consensus 314 g~Gs~c~tr~-~~---------~~g-~~~~~ai~~~~~a~~~~~~~~g~~~~viadgGir~~gdi~KAla~GA~~vm~G~ 382 (502)
T PRK07107 314 GGGSICITRE-QK---------GIG-RGQATALIEVAKARDEYFEETGVYIPICSDGGIVYDYHMTLALAMGADFIMLGR 382 (502)
T ss_pred CCCcCccccc-cc---------CCC-ccHHHHHHHHHHHHHHHHhhcCCcceEEEcCCCCchhHHHHHHHcCCCeeeeCh
Confidence 2242221100 00 001 122333333333 5555675555664 67899999886 58999998774
Q ss_pred H
Q 017271 310 K 310 (374)
Q Consensus 310 ~ 310 (374)
.
T Consensus 383 ~ 383 (502)
T PRK07107 383 Y 383 (502)
T ss_pred h
Confidence 4
No 51
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist. This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.
Probab=77.75 E-value=16 Score=36.08 Aligned_cols=139 Identities=10% Similarity=0.079 Sum_probs=94.9
Q ss_pred CeEEEEecCCccCCHHHHHHHHHHHHHHhcCCCCCCCcEEEEecCChhHHHHHHHHHHcCceeEEeecCCHHHHHHHHH-
Q 017271 150 GRVSTEVDARLAYDTHGIIRKVHDLLKLYSEIDVPPERLLFKIPSTWQGIEASRLLESEGIQTHLTFVYSFAQAAAAAQ- 228 (374)
Q Consensus 150 G~VS~EVdp~la~D~e~~I~eA~~L~~l~~~~gv~~~nVlIKIPaT~eGi~A~~~L~~eGI~vN~TlIFS~~QA~aaa~- 228 (374)
|+=|+++|.. ..+.++.++.++++.+++...|+ .|-..|-... | ...++.-+...+-+++||..+.+
T Consensus 97 Gf~sVmid~s-~l~~~eni~~t~~v~~~a~~~gv---~Ve~ElG~~g-g-------~ed~~~g~~~~~t~~eea~~f~~~ 164 (282)
T TIGR01859 97 GFSSVMIDGS-HLPFEENLALTKKVVEIAHAKGV---SVEAELGTLG-G-------IEDGVDEKEAELADPDEAEQFVKE 164 (282)
T ss_pred CCCEEEECCC-CCCHHHHHHHHHHHHHHHHHcCC---EEEEeeCCCc-C-------ccccccccccccCCHHHHHHHHHH
Confidence 7889999985 46889999999999999988887 3666664321 2 11111111233569999999997
Q ss_pred cCCcEEEechhhhhhhhhcCCCCccchhhhccCCCcHHHHHHHHHHHHHHcCccHHHHHhccCChhcHHH--hhCCcEec
Q 017271 229 AGASVIQIFVGRLRDWARNHSGDPEIDDALKRGEDPALSLVSKAYNYIHKYGHKSKLMAAAVRNKQDLFS--LLGVDYII 306 (374)
Q Consensus 229 AGas~ISpFVGRIdd~~~~~~~d~~~~~~~~~~~d~Gv~~v~~iy~~~k~~g~~T~vLaAS~Rn~~~i~~--laG~D~lT 306 (374)
.|++|+++=+|-+--.+++. ..-++...++|.+.+ +.+....+.|.-+.+++.. .+|++-+-
T Consensus 165 tgvD~Lavs~Gt~hg~~~~~-------------~~l~~e~L~~i~~~~---~iPlv~hGgSGi~~e~i~~~i~~Gi~kiN 228 (282)
T TIGR01859 165 TGVDYLAAAIGTSHGKYKGE-------------PGLDFERLKEIKELT---NIPLVLHGASGIPEEQIKKAIKLGIAKIN 228 (282)
T ss_pred HCcCEEeeccCccccccCCC-------------CccCHHHHHHHHHHh---CCCEEEECCCCCCHHHHHHHHHcCCCEEE
Confidence 79999999888875433211 113466666665543 4566667888888888876 57988887
Q ss_pred ccHHHHHHHH
Q 017271 307 APLKVLQSLK 316 (374)
Q Consensus 307 ipp~ll~~L~ 316 (374)
+.-.+...+.
T Consensus 229 v~T~l~~a~~ 238 (282)
T TIGR01859 229 IDTDCRIAFT 238 (282)
T ss_pred ECcHHHHHHH
Confidence 6666655543
No 52
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=76.92 E-value=14 Score=35.00 Aligned_cols=69 Identities=20% Similarity=0.209 Sum_probs=51.4
Q ss_pred CCHHHHHHHHHHHHHHhcCCCCCCCcEEEEec-CChhHHHHHHHHHHc--CceeEEeecCCHHHHHHHHHcCCc-EEEec
Q 017271 162 YDTHGIIRKVHDLLKLYSEIDVPPERLLFKIP-STWQGIEASRLLESE--GIQTHLTFVYSFAQAAAAAQAGAS-VIQIF 237 (374)
Q Consensus 162 ~D~e~~I~eA~~L~~l~~~~gv~~~nVlIKIP-aT~eGi~A~~~L~~e--GI~vN~TlIFS~~QA~aaa~AGas-~ISpF 237 (374)
.|.+..++-++.|++- |+ . +|-|+ .|+..++++++|.++ ++.+=+=-|.+.+|+..|.++|+. ++||.
T Consensus 17 ~~~e~a~~~~~al~~~----Gi--~--~iEit~~t~~a~~~i~~l~~~~~~~~vGAGTVl~~~~a~~a~~aGA~FivsP~ 88 (204)
T TIGR01182 17 DDVDDALPLAKALIEG----GL--R--VLEVTLRTPVALDAIRLLRKEVPDALIGAGTVLNPEQLRQAVDAGAQFIVSPG 88 (204)
T ss_pred CCHHHHHHHHHHHHHc----CC--C--EEEEeCCCccHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHHcCCCEEECCC
Confidence 4676666766666664 44 3 44555 455779999999876 588888999999999999999985 45665
Q ss_pred h
Q 017271 238 V 238 (374)
Q Consensus 238 V 238 (374)
.
T Consensus 89 ~ 89 (204)
T TIGR01182 89 L 89 (204)
T ss_pred C
Confidence 4
No 53
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=76.51 E-value=13 Score=35.30 Aligned_cols=77 Identities=13% Similarity=0.025 Sum_probs=53.2
Q ss_pred CCHHHHHHHHHHHHHHhcCCCCCCCcEEEEecCChhHHHHHHHHHHc-----CceeEEeecCCHHHHHHHHHcCC-cEEE
Q 017271 162 YDTHGIIRKVHDLLKLYSEIDVPPERLLFKIPSTWQGIEASRLLESE-----GIQTHLTFVYSFAQAAAAAQAGA-SVIQ 235 (374)
Q Consensus 162 ~D~e~~I~eA~~L~~l~~~~gv~~~nVlIKIPaT~eGi~A~~~L~~e-----GI~vN~TlIFS~~QA~aaa~AGa-s~IS 235 (374)
.|.+..+.-++.|++- |+ ..+=|-.- |+.+++++++|.++ ++.+=+=.|.+.+|+..|.++|+ .++|
T Consensus 22 ~~~~~a~~~~~al~~~----Gi--~~iEit~~-~~~a~~~i~~l~~~~~~~p~~~vGaGTV~~~~~~~~a~~aGA~Fivs 94 (213)
T PRK06552 22 ESKEEALKISLAVIKG----GI--KAIEVTYT-NPFASEVIKELVELYKDDPEVLIGAGTVLDAVTARLAILAGAQFIVS 94 (213)
T ss_pred CCHHHHHHHHHHHHHC----CC--CEEEEECC-CccHHHHHHHHHHHcCCCCCeEEeeeeCCCHHHHHHHHHcCCCEEEC
Confidence 4666666666655553 45 33333332 55789999999764 38888999999999999999997 4678
Q ss_pred echhh-hhhhh
Q 017271 236 IFVGR-LRDWA 245 (374)
Q Consensus 236 pFVGR-Idd~~ 245 (374)
|-++. +-++.
T Consensus 95 P~~~~~v~~~~ 105 (213)
T PRK06552 95 PSFNRETAKIC 105 (213)
T ss_pred CCCCHHHHHHH
Confidence 87643 33443
No 54
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=76.29 E-value=13 Score=34.98 Aligned_cols=70 Identities=23% Similarity=0.204 Sum_probs=46.1
Q ss_pred CCHHHHHHHHHHHHHHhcCCCCCCCcEEEEecC-ChhHHHHHHHHHHc--CceeEEeecCCHHHHHHHHHcCCc-EEEec
Q 017271 162 YDTHGIIRKVHDLLKLYSEIDVPPERLLFKIPS-TWQGIEASRLLESE--GIQTHLTFVYSFAQAAAAAQAGAS-VIQIF 237 (374)
Q Consensus 162 ~D~e~~I~eA~~L~~l~~~~gv~~~nVlIKIPa-T~eGi~A~~~L~~e--GI~vN~TlIFS~~QA~aaa~AGas-~ISpF 237 (374)
.|.+..++-++.|++- |+ . +|-|+. |+.++++++.|.++ ++.+=+=.|.+.+|+..|.++|+. ++||-
T Consensus 17 ~~~~~a~~~~~al~~g----Gi--~--~iEiT~~t~~a~~~I~~l~~~~p~~~vGAGTV~~~e~a~~a~~aGA~FivSP~ 88 (196)
T PF01081_consen 17 DDPEDAVPIAEALIEG----GI--R--AIEITLRTPNALEAIEALRKEFPDLLVGAGTVLTAEQAEAAIAAGAQFIVSPG 88 (196)
T ss_dssp SSGGGHHHHHHHHHHT----T------EEEEETTSTTHHHHHHHHHHHHTTSEEEEES--SHHHHHHHHHHT-SEEEESS
T ss_pred CCHHHHHHHHHHHHHC----CC--C--EEEEecCCccHHHHHHHHHHHCCCCeeEEEeccCHHHHHHHHHcCCCEEECCC
Confidence 4566666666666554 34 2 344444 45678888888775 899999999999999999999974 67886
Q ss_pred hh
Q 017271 238 VG 239 (374)
Q Consensus 238 VG 239 (374)
.+
T Consensus 89 ~~ 90 (196)
T PF01081_consen 89 FD 90 (196)
T ss_dssp --
T ss_pred CC
Confidence 43
No 55
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=76.07 E-value=4.5 Score=37.02 Aligned_cols=95 Identities=12% Similarity=0.054 Sum_probs=63.2
Q ss_pred ecCChhHHHHHHHHHHcCceeEEeecCCHHHHHHHHHcCCcEEEechhhhhhhhhcCCCCccchhhhccCCCcHHHHHHH
Q 017271 192 IPSTWQGIEASRLLESEGIQTHLTFVYSFAQAAAAAQAGASVIQIFVGRLRDWARNHSGDPEIDDALKRGEDPALSLVSK 271 (374)
Q Consensus 192 IPaT~eGi~A~~~L~~eGI~vN~TlIFS~~QA~aaa~AGas~ISpFVGRIdd~~~~~~~d~~~~~~~~~~~d~Gv~~v~~ 271 (374)
.|.+..- .++..+..|+++-. -+.|++|+..|.++|++|+..|=. . ..|...++.
T Consensus 82 ~p~~~~~--~~~~~~~~~~~~i~-gv~t~~e~~~A~~~Gad~i~~~p~-----------~-----------~~g~~~~~~ 136 (190)
T cd00452 82 SPGLDPE--VVKAANRAGIPLLP-GVATPTEIMQALELGADIVKLFPA-----------E-----------AVGPAYIKA 136 (190)
T ss_pred cCCCCHH--HHHHHHHcCCcEEC-CcCCHHHHHHHHHCCCCEEEEcCC-----------c-----------ccCHHHHHH
Confidence 6766543 33333345777654 566999999999999999998621 0 014544444
Q ss_pred HHHHHHHcCccHHHHHhccCChhcHHH--hhCCcEecccHHHHHHH
Q 017271 272 AYNYIHKYGHKSKLMAAAVRNKQDLFS--LLGVDYIIAPLKVLQSL 315 (374)
Q Consensus 272 iy~~~k~~g~~T~vLaAS~Rn~~~i~~--laG~D~lTipp~ll~~L 315 (374)
+. ..-.+..+++...-+.+++.+ .+|+|.+.+.-.+.+++
T Consensus 137 l~----~~~~~~p~~a~GGI~~~n~~~~~~~G~~~v~v~s~i~~~~ 178 (190)
T cd00452 137 LK----GPFPQVRFMPTGGVSLDNAAEWLAAGVVAVGGGSLLPKDA 178 (190)
T ss_pred HH----hhCCCCeEEEeCCCCHHHHHHHHHCCCEEEEEchhcchhh
Confidence 42 222246688888889999977 58999998777766443
No 56
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=75.23 E-value=16 Score=34.97 Aligned_cols=72 Identities=17% Similarity=0.106 Sum_probs=51.1
Q ss_pred cCCHHHHHHHHHHHHHHhcCCCCCCCcEEEEecC-ChhHHHHHHHHHH----c--CceeEEeecCCHHHHHHHHHcCCc-
Q 017271 161 AYDTHGIIRKVHDLLKLYSEIDVPPERLLFKIPS-TWQGIEASRLLES----E--GIQTHLTFVYSFAQAAAAAQAGAS- 232 (374)
Q Consensus 161 a~D~e~~I~eA~~L~~l~~~~gv~~~nVlIKIPa-T~eGi~A~~~L~~----e--GI~vN~TlIFS~~QA~aaa~AGas- 232 (374)
..|.+..++-++.|++- |+ . +|-|+- |+.++++++.|.+ + ++.+=+-.|.+.+|+.+|.++|+.
T Consensus 23 ~~~~~~a~~~~~al~~g----Gi--~--~iEiT~~tp~a~~~i~~l~~~~~~~~p~~~vGaGTVl~~e~a~~a~~aGA~F 94 (222)
T PRK07114 23 HADVEVAKKVIKACYDG----GA--R--VFEFTNRGDFAHEVFAELVKYAAKELPGMILGVGSIVDAATAALYIQLGANF 94 (222)
T ss_pred cCCHHHHHHHHHHHHHC----CC--C--EEEEeCCCCcHHHHHHHHHHHHHhhCCCeEEeeEeCcCHHHHHHHHHcCCCE
Confidence 35666666666666554 45 2 455554 4478888888852 2 388888999999999999999984
Q ss_pred EEEechhh
Q 017271 233 VIQIFVGR 240 (374)
Q Consensus 233 ~ISpFVGR 240 (374)
++||.+.+
T Consensus 95 iVsP~~~~ 102 (222)
T PRK07114 95 IVTPLFNP 102 (222)
T ss_pred EECCCCCH
Confidence 67887654
No 57
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=75.01 E-value=12 Score=34.90 Aligned_cols=125 Identities=16% Similarity=0.133 Sum_probs=66.2
Q ss_pred eEEEEecCCccCCHHHHHHHHHHHHHHhcCCCCCCCcEEEEecCChhHHHHHHHHHHcCceeEEe----------ecC-C
Q 017271 151 RVSTEVDARLAYDTHGIIRKVHDLLKLYSEIDVPPERLLFKIPSTWQGIEASRLLESEGIQTHLT----------FVY-S 219 (374)
Q Consensus 151 ~VS~EVdp~la~D~e~~I~eA~~L~~l~~~~gv~~~nVlIKIPaT~eGi~A~~~L~~eGI~vN~T----------lIF-S 219 (374)
-||-|+-| .|.=.....+.++.+.+.+.|. ..+.+ .+.+.+++++... ++++... +++ .
T Consensus 8 ~~~~~~~~---~~~~~~~~~~~~~a~a~~~~G~----~~~~~-~~~~~i~~i~~~~--~~Pil~~~~~d~~~~~~~~~~~ 77 (221)
T PRK01130 8 IVSCQALP---GEPLHSPEIMAAMALAAVQGGA----VGIRA-NGVEDIKAIRAVV--DVPIIGIIKRDYPDSEVYITPT 77 (221)
T ss_pred EEEecCCC---CCCCCCHHHHHHHHHHHHHCCC----eEEEc-CCHHHHHHHHHhC--CCCEEEEEecCCCCCCceECCC
Confidence 46777632 2322223344555555655555 33444 3577777777654 5555211 121 3
Q ss_pred HHHHHHHHHcCCcEEEechhhhhhhhhcCCCCccchhhhccCCCcHHHHHHHHHHHHHHcCccHHHHHhccCChhcHHH-
Q 017271 220 FAQAAAAAQAGASVIQIFVGRLRDWARNHSGDPEIDDALKRGEDPALSLVSKAYNYIHKYGHKSKLMAAAVRNKQDLFS- 298 (374)
Q Consensus 220 ~~QA~aaa~AGas~ISpFVGRIdd~~~~~~~d~~~~~~~~~~~d~Gv~~v~~iy~~~k~~g~~T~vLaAS~Rn~~~i~~- 298 (374)
.+|+..|.++|+.+|.+-..-... |.-....++.+..+++ ....+ .....+.+++..
T Consensus 78 ~~~v~~a~~aGad~I~~d~~~~~~--------------------p~~~~~~~~i~~~~~~-~~i~v-i~~v~t~ee~~~a 135 (221)
T PRK01130 78 LKEVDALAAAGADIIALDATLRPR--------------------PDGETLAELVKRIKEY-PGQLL-MADCSTLEEGLAA 135 (221)
T ss_pred HHHHHHHHHcCCCEEEEeCCCCCC--------------------CCCCCHHHHHHHHHhC-CCCeE-EEeCCCHHHHHHH
Confidence 679999999999988885322110 0001233445555552 12222 234556666654
Q ss_pred -hhCCcEecc
Q 017271 299 -LLGVDYIIA 307 (374)
Q Consensus 299 -laG~D~lTi 307 (374)
.+|+|++.+
T Consensus 136 ~~~G~d~i~~ 145 (221)
T PRK01130 136 QKLGFDFIGT 145 (221)
T ss_pred HHcCCCEEEc
Confidence 588998844
No 58
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=74.82 E-value=13 Score=33.64 Aligned_cols=92 Identities=26% Similarity=0.350 Sum_probs=55.6
Q ss_pred EEe--cCC-hhHHHHHHHHHHc--CceeEEeecCC-H--HHHHHHHHcCCcEEEechhhhhhhhhcCCCCccchhhhccC
Q 017271 190 FKI--PST-WQGIEASRLLESE--GIQTHLTFVYS-F--AQAAAAAQAGASVIQIFVGRLRDWARNHSGDPEIDDALKRG 261 (374)
Q Consensus 190 IKI--PaT-~eGi~A~~~L~~e--GI~vN~TlIFS-~--~QA~aaa~AGas~ISpFVGRIdd~~~~~~~d~~~~~~~~~~ 261 (374)
||| |.. ..|++.++.+.+. ++++-+.+-+. . .++..++++|+.++..-.--
T Consensus 29 ieig~~~~~~~g~~~i~~i~~~~~~~~i~~~~~v~~~~~~~~~~~~~aGad~i~~h~~~--------------------- 87 (202)
T cd04726 29 IEAGTPLIKSEGMEAVRALREAFPDKIIVADLKTADAGALEAEMAFKAGADIVTVLGAA--------------------- 87 (202)
T ss_pred EEcCCHHHHHhCHHHHHHHHHHCCCCEEEEEEEeccccHHHHHHHHhcCCCEEEEEeeC---------------------
Confidence 777 432 3688999999886 77776654333 2 36788999999887743110
Q ss_pred CCcHHHHHHHHHHHHHHcCccHHHHH--hccCChhcHHH--hhCCcEecc
Q 017271 262 EDPALSLVSKAYNYIHKYGHKSKLMA--AAVRNKQDLFS--LLGVDYIIA 307 (374)
Q Consensus 262 ~d~Gv~~v~~iy~~~k~~g~~T~vLa--AS~Rn~~~i~~--laG~D~lTi 307 (374)
+-....++.++.+++|.+ ++. -+..+..++.. ..|+|++.+
T Consensus 88 ---~~~~~~~~i~~~~~~g~~--~~v~~~~~~t~~e~~~~~~~~~d~v~~ 132 (202)
T cd04726 88 ---PLSTIKKAVKAAKKYGKE--VQVDLIGVEDPEKRAKLLKLGVDIVIL 132 (202)
T ss_pred ---CHHHHHHHHHHHHHcCCe--EEEEEeCCCCHHHHHHHHHCCCCEEEE
Confidence 112344555666666643 232 24445566554 358888755
No 59
>cd03319 L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides. The genomic context and the substrate specificity of characterized members of this family from E.coli and B.subtilis indicates a possible role in the metabolism of the murein peptide of peptidoglycan, of which L-Ala-D-Glu is a component. L-Ala-D/L-Glu epimerase is a member of the enolase-superfamily, which is characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=73.52 E-value=61 Score=31.77 Aligned_cols=111 Identities=19% Similarity=0.209 Sum_probs=74.0
Q ss_pred HHHhcCCCCeEEEEecCCccCCHHHHHHHHHHHHHHhcCCCCCCCcEEEEecCChhHHHHHHHHHHc-CceeEE-eecCC
Q 017271 142 GDLAKMVPGRVSTEVDARLAYDTHGIIRKVHDLLKLYSEIDVPPERLLFKIPSTWQGIEASRLLESE-GIQTHL-TFVYS 219 (374)
Q Consensus 142 ~eil~~v~G~VS~EVdp~la~D~e~~I~eA~~L~~l~~~~gv~~~nVlIKIPaT~eGi~A~~~L~~e-GI~vN~-TlIFS 219 (374)
+.+.+.++ .+-+-||++-..|.+..++-++.+ ++.|+ ..|.=|.....+..+++|.+. +|++-+ --+++
T Consensus 169 ~~lr~~~g-~~~l~vD~n~~~~~~~A~~~~~~l----~~~~l----~~iEeP~~~~d~~~~~~L~~~~~ipIa~~E~~~~ 239 (316)
T cd03319 169 RAIREAAP-DARLRVDANQGWTPEEAVELLREL----AELGV----ELIEQPVPAGDDDGLAYLRDKSPLPIMADESCFS 239 (316)
T ss_pred HHHHHhCC-CCeEEEeCCCCcCHHHHHHHHHHH----HhcCC----CEEECCCCCCCHHHHHHHHhcCCCCEEEeCCCCC
Confidence 34445454 566777887778875544444444 33322 467767766566666777665 566433 24799
Q ss_pred HHHHHHHHHcC-CcEEEechhhhhhhhhcCCCCccchhhhccCCCcHHHHHHHHHHHHHHcCccH
Q 017271 220 FAQAAAAAQAG-ASVIQIFVGRLRDWARNHSGDPEIDDALKRGEDPALSLVSKAYNYIHKYGHKS 283 (374)
Q Consensus 220 ~~QA~aaa~AG-as~ISpFVGRIdd~~~~~~~d~~~~~~~~~~~d~Gv~~v~~iy~~~k~~g~~T 283 (374)
+.+...+.+.| +.++.|=++++ -|+..++++.++.+++|.+.
T Consensus 240 ~~~~~~~~~~~~~d~v~~~~~~~----------------------GGi~~~~~~~~~a~~~gi~~ 282 (316)
T cd03319 240 AADAARLAGGGAYDGINIKLMKT----------------------GGLTEALRIADLARAAGLKV 282 (316)
T ss_pred HHHHHHHHhcCCCCEEEEecccc----------------------CCHHHHHHHHHHHHHcCCCE
Confidence 99999888865 78888876664 27888999999989887653
No 60
>PLN02535 glycolate oxidase
Probab=73.23 E-value=11 Score=38.63 Aligned_cols=104 Identities=20% Similarity=0.291 Sum_probs=72.8
Q ss_pred cCChhHHHHHHHHHHcCceeEEeecCCHHHHHHHHHcCCcEEEe--chhhhhhhhhcCCCCccchhhhccCCCcHHHHHH
Q 017271 193 PSTWQGIEASRLLESEGIQTHLTFVYSFAQAAAAAQAGASVIQI--FVGRLRDWARNHSGDPEIDDALKRGEDPALSLVS 270 (374)
Q Consensus 193 PaT~eGi~A~~~L~~eGI~vN~TlIFS~~QA~aaa~AGas~ISp--FVGRIdd~~~~~~~d~~~~~~~~~~~d~Gv~~v~ 270 (374)
+.||+=|+.++... +.++-+--|.+.+.|..|.++|++.|.. .-||..| .++..+.
T Consensus 209 ~~tW~~i~~lr~~~--~~PvivKgV~~~~dA~~a~~~GvD~I~vsn~GGr~~d--------------------~~~~t~~ 266 (364)
T PLN02535 209 SLSWKDIEWLRSIT--NLPILIKGVLTREDAIKAVEVGVAGIIVSNHGARQLD--------------------YSPATIS 266 (364)
T ss_pred CCCHHHHHHHHhcc--CCCEEEecCCCHHHHHHHHhcCCCEEEEeCCCcCCCC--------------------CChHHHH
Confidence 56998888777643 5788888899999999999999877633 3344322 2343444
Q ss_pred HHHHHHHHcCccHHHH-HhccCChhcHHH--hhCCcEecccHHHHHHHHhC
Q 017271 271 KAYNYIHKYGHKSKLM-AAAVRNKQDLFS--LLGVDYIIAPLKVLQSLKES 318 (374)
Q Consensus 271 ~iy~~~k~~g~~T~vL-aAS~Rn~~~i~~--laG~D~lTipp~ll~~L~~~ 318 (374)
.+.++.+..+.+..|+ .-.+|+-.+++. .+|+|.+.+.-.++..+...
T Consensus 267 ~L~ev~~av~~~ipVi~dGGIr~g~Dv~KALalGA~aV~vGr~~l~~l~~~ 317 (364)
T PLN02535 267 VLEEVVQAVGGRVPVLLDGGVRRGTDVFKALALGAQAVLVGRPVIYGLAAK 317 (364)
T ss_pred HHHHHHHHHhcCCCEEeeCCCCCHHHHHHHHHcCCCEEEECHHHHhhhhhc
Confidence 4444444433344455 567899999987 58999999998888776543
No 61
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=72.34 E-value=23 Score=37.38 Aligned_cols=95 Identities=14% Similarity=0.112 Sum_probs=62.1
Q ss_pred HHHHHHHHhcCCCCeEEEEecCCccCCHHHHHHHHHHHHHHhcCCCCCCCcEEEEecC---Ch-hHHHHHHHHHHc----
Q 017271 137 LVNVGGDLAKMVPGRVSTEVDARLAYDTHGIIRKVHDLLKLYSEIDVPPERLLFKIPS---TW-QGIEASRLLESE---- 208 (374)
Q Consensus 137 ~v~~g~eil~~v~G~VS~EVdp~la~D~e~~I~eA~~L~~l~~~~gv~~~nVlIKIPa---T~-eGi~A~~~L~~e---- 208 (374)
.+..+++.-..+.+.++.+.+|+ ++.+..++-|+++.+. |+ ++|.||=.+ ++ +-.+.++.|.++
T Consensus 128 ~v~~ak~~G~~v~~~i~~t~~p~--~~~~~~~~~a~~l~~~----Ga--d~I~i~Dt~G~l~P~~v~~lv~alk~~~~~p 199 (448)
T PRK12331 128 AVKATKKAGGHAQVAISYTTSPV--HTIDYFVKLAKEMQEM----GA--DSICIKDMAGILTPYVAYELVKRIKEAVTVP 199 (448)
T ss_pred HHHHHHHcCCeEEEEEEeecCCC--CCHHHHHHHHHHHHHc----CC--CEEEEcCCCCCCCHHHHHHHHHHHHHhcCCe
Confidence 34344433222346788888886 7888888888887665 44 678877332 22 234444555443
Q ss_pred -CceeEEeecCCHHHHHHHHHcCCcEEEechh
Q 017271 209 -GIQTHLTFVYSFAQAAAAAQAGASVIQIFVG 239 (374)
Q Consensus 209 -GI~vN~TlIFS~~QA~aaa~AGas~ISpFVG 239 (374)
+++++-|.=..+.-+++|++||+.++.-=++
T Consensus 200 i~~H~Hnt~GlA~AN~laAieaGad~vD~sv~ 231 (448)
T PRK12331 200 LEVHTHATSGIAEMTYLKAIEAGADIIDTAIS 231 (448)
T ss_pred EEEEecCCCCcHHHHHHHHHHcCCCEEEeecc
Confidence 6777778889999999999999876654444
No 62
>cd03324 rTSbeta_L-fuconate_dehydratase Human rTS beta is encoded by the rTS gene which, through alternative RNA splicing, also encodes rTS alpha whose mRNA is complementary to thymidylate synthase mRNA. rTS beta expression is associated with the production of small molecules that appear to mediate the down-regulation of thymidylate synthase protein by a novel intercellular signaling mechanism. A member of this family, from Xanthomonas, has been characterized to be a L-fuconate dehydratase. rTS beta belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=71.99 E-value=49 Score=34.34 Aligned_cols=112 Identities=17% Similarity=0.108 Sum_probs=82.6
Q ss_pred HHHhcCCCCeEEEEecCCccCCHHHHHHHHHHHHHHhcCCCCCCCcEEEEecCChhHHHHHHHHHHc----CceeEEe-e
Q 017271 142 GDLAKMVPGRVSTEVDARLAYDTHGIIRKVHDLLKLYSEIDVPPERLLFKIPSTWQGIEASRLLESE----GIQTHLT-F 216 (374)
Q Consensus 142 ~eil~~v~G~VS~EVdp~la~D~e~~I~eA~~L~~l~~~~gv~~~nVlIKIPaT~eGi~A~~~L~~e----GI~vN~T-l 216 (374)
+.+.+.+...+.+=||++-+++.+..++-+++|.. +|+ .+|-=|...+.+..+++|.+. +|++.+. -
T Consensus 231 ~avRe~vG~~~~L~vDaN~~w~~~~A~~~~~~L~~----~~l----~~iEEP~~~~d~~~~~~L~~~~~~~~iPIa~gEs 302 (415)
T cd03324 231 RLAREVIGPDNKLMIDANQRWDVPEAIEWVKQLAE----FKP----WWIEEPTSPDDILGHAAIRKALAPLPIGVATGEH 302 (415)
T ss_pred HHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHhhc----cCC----CEEECCCCCCcHHHHHHHHHhcccCCCceecCCc
Confidence 34555564567888888888888765555555533 333 367778877788888888776 4898777 5
Q ss_pred cCCHHHHHHHHHcC-CcEEEechhhhhhhhhcCCCCccchhhhccCCCcHHHHHHHHHHHHHHcCccH
Q 017271 217 VYSFAQAAAAAQAG-ASVIQIFVGRLRDWARNHSGDPEIDDALKRGEDPALSLVSKAYNYIHKYGHKS 283 (374)
Q Consensus 217 IFS~~QA~aaa~AG-as~ISpFVGRIdd~~~~~~~d~~~~~~~~~~~d~Gv~~v~~iy~~~k~~g~~T 283 (374)
+|+..+.....+.| +.++.|=++|+ -|+..++++.++-+.+|.+.
T Consensus 303 ~~~~~~~~~ll~~~a~dil~~d~~~~----------------------GGit~~~kia~lA~a~gi~~ 348 (415)
T cd03324 303 CQNRVVFKQLLQAGAIDVVQIDSCRL----------------------GGVNENLAVLLMAAKFGVPV 348 (415)
T ss_pred cCCHHHHHHHHHcCCCCEEEeCcccc----------------------CCHHHHHHHHHHHHHcCCeE
Confidence 78999999988876 68888887775 27888999999988887653
No 63
>TIGR02151 IPP_isom_2 isopentenyl-diphosphate delta-isomerase, type 2. Isopentenyl-diphosphate delta-isomerase (IPP isomerase) interconverts isopentenyl diphosphate and dimethylallyl diphosphate. This model represents the type 2 enzyme. FMN, NADPH, and Mg2+ are required by this form, which lacks homology to the type 1 enzyme (TIGR02150). IPP is precursor to many compounds, including enzyme cofactors, sterols, and isoprenoids.
Probab=71.17 E-value=69 Score=32.16 Aligned_cols=114 Identities=18% Similarity=0.178 Sum_probs=68.7
Q ss_pred HHHHHHHHc-CceeEEeec---CCHHHHHHHHHcCCcEEEechhhhh-hhhhcCC--CCccchhhhccCCCcHHHHHHHH
Q 017271 200 EASRLLESE-GIQTHLTFV---YSFAQAAAAAQAGASVIQIFVGRLR-DWARNHS--GDPEIDDALKRGEDPALSLVSKA 272 (374)
Q Consensus 200 ~A~~~L~~e-GI~vN~TlI---FS~~QA~aaa~AGas~ISpFVGRId-d~~~~~~--~d~~~~~~~~~~~d~Gv~~v~~i 272 (374)
+.++.+.+. +++|-+-.+ ++.+-+..+.++|+.+|-+. ||-- .|..-.. ........+. .+-|+..+..+
T Consensus 169 e~i~~i~~~~~vPVivK~~g~g~~~~~a~~L~~aGvd~I~Vs-g~gGt~~~~ie~~r~~~~~~~~~~--~~~g~~t~~~l 245 (333)
T TIGR02151 169 EKIAEICSQLSVPVIVKEVGFGISKEVAKLLADAGVSAIDVA-GAGGTSWAQVENYRAKGSNLASFF--NDWGIPTAASL 245 (333)
T ss_pred HHHHHHHHhcCCCEEEEecCCCCCHHHHHHHHHcCCCEEEEC-CCCCCcccchhhhcccccccchhh--hcccHhHHHHH
Confidence 566666665 667666555 78888888999999988886 4421 1110000 0000000000 12366666666
Q ss_pred HHHHHHcCccHHHHH-hccCChhcHHH--hhCCcEecccHHHHHHHHh
Q 017271 273 YNYIHKYGHKSKLMA-AAVRNKQDLFS--LLGVDYIIAPLKVLQSLKE 317 (374)
Q Consensus 273 y~~~k~~g~~T~vLa-AS~Rn~~~i~~--laG~D~lTipp~ll~~L~~ 317 (374)
++..+ ...+..|++ -.+|+..++.. .+|||.+-+.-.+|..+..
T Consensus 246 ~~~~~-~~~~ipVIasGGI~~~~di~kaLalGAd~V~igr~~L~~~~~ 292 (333)
T TIGR02151 246 LEVRS-DAPDAPIIASGGLRTGLDVAKAIALGADAVGMARPFLKAALD 292 (333)
T ss_pred HHHHh-cCCCCeEEEECCCCCHHHHHHHHHhCCCeehhhHHHHHHHHh
Confidence 66544 223445554 45789999987 4899999999999988763
No 64
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=70.74 E-value=64 Score=30.88 Aligned_cols=133 Identities=16% Similarity=0.150 Sum_probs=77.0
Q ss_pred ccCCHHHHHHHHHHHHHHhcCCCCCCCcEEEEecCChh-HHHHHHHHHHcCceeEEe-ec-CCHHHHHHHHHcCCcEEEe
Q 017271 160 LAYDTHGIIRKVHDLLKLYSEIDVPPERLLFKIPSTWQ-GIEASRLLESEGIQTHLT-FV-YSFAQAAAAAQAGASVIQI 236 (374)
Q Consensus 160 la~D~e~~I~eA~~L~~l~~~~gv~~~nVlIKIPaT~e-Gi~A~~~L~~eGI~vN~T-lI-FS~~QA~aaa~AGas~ISp 236 (374)
+.++++..++-++.|.+. || +.|-+=+|...+ -.+.++.|.+.+-++.+. ++ ........+.++|...|-.
T Consensus 15 ~~~~~~~k~~i~~~L~~~----Gv--~~iE~g~p~~~~~~~e~~~~l~~~~~~~~~~~~~r~~~~~v~~a~~~g~~~i~i 88 (259)
T cd07939 15 VAFSREEKLAIARALDEA----GV--DEIEVGIPAMGEEEREAIRAIVALGLPARLIVWCRAVKEDIEAALRCGVTAVHI 88 (259)
T ss_pred CCCCHHHHHHHHHHHHHc----CC--CEEEEecCCCCHHHHHHHHHHHhcCCCCEEEEeccCCHHHHHHHHhCCcCEEEE
Confidence 456776666666555554 56 566666786543 346777777754333333 23 4577777888899998888
Q ss_pred chhhhhhhhhcCCCCccchhhhccCCCcHHHHHHHHHHHHHHcCccHH--HHHhccCChhcHHH------hhCCcEecc
Q 017271 237 FVGRLRDWARNHSGDPEIDDALKRGEDPALSLVSKAYNYIHKYGHKSK--LMAAAVRNKQDLFS------LLGVDYIIA 307 (374)
Q Consensus 237 FVGRIdd~~~~~~~d~~~~~~~~~~~d~Gv~~v~~iy~~~k~~g~~T~--vLaAS~Rn~~~i~~------laG~D~lTi 307 (374)
|++--+-...++.+ ...+..+..++++.++.++.|+... .+-++--+.+.+.+ .+|+|.+.+
T Consensus 89 ~~~~s~~~~~~~~~---------~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~G~~~i~l 158 (259)
T cd07939 89 SIPVSDIHLAHKLG---------KDRAWVLDQLRRLVGRAKDRGLFVSVGAEDASRADPDFLIEFAEVAQEAGADRLRF 158 (259)
T ss_pred EEecCHHHHHHHhC---------CCHHHHHHHHHHHHHHHHHCCCeEEEeeccCCCCCHHHHHHHHHHHHHCCCCEEEe
Confidence 87443322222111 1112467888888899999887543 22233233444432 367776533
No 65
>cd03328 MR_like_3 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 3. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=70.71 E-value=60 Score=32.64 Aligned_cols=113 Identities=17% Similarity=0.133 Sum_probs=80.8
Q ss_pred HHHhcCCCCeEEEEecCCccCCHHHHHHHHHHHHHHhcCCCCCCCcEEEEecCChhHHHHHHHHHHc---CceeEEee-c
Q 017271 142 GDLAKMVPGRVSTEVDARLAYDTHGIIRKVHDLLKLYSEIDVPPERLLFKIPSTWQGIEASRLLESE---GIQTHLTF-V 217 (374)
Q Consensus 142 ~eil~~v~G~VS~EVdp~la~D~e~~I~eA~~L~~l~~~~gv~~~nVlIKIPaT~eGi~A~~~L~~e---GI~vN~Tl-I 217 (374)
+.+.+.+...+.+=||++-+++.+..++-+++|..+ ++ .+|-=|.-.+.+...++|.+. +|++-+-- +
T Consensus 173 ~~vRe~~G~~~~l~vDaN~~~~~~~A~~~~~~l~~~----~~----~~~EeP~~~~d~~~~~~l~~~~~~~iPIa~gE~~ 244 (352)
T cd03328 173 AAARRAIGPDAELFVDANGAYSRKQALALARAFADE----GV----TWFEEPVSSDDLAGLRLVRERGPAGMDIAAGEYA 244 (352)
T ss_pred HHHHHHcCCCCeEEEECCCCCCHHHHHHHHHHHHHh----Cc----chhhCCCChhhHHHHHHHHhhCCCCCCEEecccc
Confidence 345555555688889998888887777766666543 22 245556666667777777765 47776664 6
Q ss_pred CCHHHHHHHHHcC-CcEEEechhhhhhhhhcCCCCccchhhhccCCCcHHHHHHHHHHHHHHcCccHH
Q 017271 218 YSFAQAAAAAQAG-ASVIQIFVGRLRDWARNHSGDPEIDDALKRGEDPALSLVSKAYNYIHKYGHKSK 284 (374)
Q Consensus 218 FS~~QA~aaa~AG-as~ISpFVGRIdd~~~~~~~d~~~~~~~~~~~d~Gv~~v~~iy~~~k~~g~~T~ 284 (374)
|+..++....+.| +.++.|=+.++ -|+.-++++.++-+.+|.+..
T Consensus 245 ~~~~~~~~li~~~a~div~~d~~~~----------------------GGit~~~~ia~~A~a~gi~~~ 290 (352)
T cd03328 245 YTLAYFRRLLEAHAVDVLQADVTRC----------------------GGVTGFLQAAALAAAHHVDLS 290 (352)
T ss_pred cCHHHHHHHHHcCCCCEEecCcccc----------------------CCHHHHHHHHHHHHHcCCeec
Confidence 8999999999887 68888877664 278889999999898876643
No 66
>PRK09485 mmuM homocysteine methyltransferase; Provisional
Probab=70.38 E-value=97 Score=30.64 Aligned_cols=86 Identities=16% Similarity=0.152 Sum_probs=56.4
Q ss_pred hhhhhhHHHHHHHHhcCC---CCeEEEEecCCcc-------------CCHHHHHHHHHHHHHHhcCCCCCCCcEEEE-ec
Q 017271 131 CFFNKALVNVGGDLAKMV---PGRVSTEVDARLA-------------YDTHGIIRKVHDLLKLYSEIDVPPERLLFK-IP 193 (374)
Q Consensus 131 ~~~~~~~v~~g~eil~~v---~G~VS~EVdp~la-------------~D~e~~I~eA~~L~~l~~~~gv~~~nVlIK-IP 193 (374)
..+.+..++++++..+.. +.+|.--+-|.-+ -+.+++.+.-++.++.+.+.|+ +-+++- +|
T Consensus 86 ~~l~~~av~lA~~a~~~~~~~~~~VaGsiGP~g~~l~~~~~y~g~~~~~~~~~~~~~~~q~~~l~~~gv--D~i~~ET~~ 163 (304)
T PRK09485 86 EELIRRSVELAKEARDEFWAEKPLVAGSVGPYGAYLADGSEYRGDYGLSEEELQDFHRPRIEALAEAGA--DLLACETIP 163 (304)
T ss_pred HHHHHHHHHHHHHHHHhhccCCceEEEecCCcccccCCCCCCCCCCCCCHHHHHHHHHHHHHHHhhCCC--CEEEEeccC
Confidence 445667777777776543 4677777777432 1455555555555666656666 678775 89
Q ss_pred CChhHHHHHHHHHHc--CceeEEeecC
Q 017271 194 STWQGIEASRLLESE--GIQTHLTFVY 218 (374)
Q Consensus 194 aT~eGi~A~~~L~~e--GI~vN~TlIF 218 (374)
...|-..+++.+++. ++++-+++.|
T Consensus 164 ~~~E~~~~~~~~~~~~~~~pv~is~~~ 190 (304)
T PRK09485 164 NLDEAEALVELLKEEFPGVPAWLSFTL 190 (304)
T ss_pred CHHHHHHHHHHHHHhcCCCcEEEEEEe
Confidence 988888887777755 6776655554
No 67
>cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain. Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway.
Probab=69.97 E-value=26 Score=35.07 Aligned_cols=112 Identities=21% Similarity=0.213 Sum_probs=66.1
Q ss_pred HHHHHHHHc-CceeEEeec---CCHHHHHHHHHcCCcEEEechhh-------hhhhhhcCCCCccchhhhccCCCcHHHH
Q 017271 200 EASRLLESE-GIQTHLTFV---YSFAQAAAAAQAGASVIQIFVGR-------LRDWARNHSGDPEIDDALKRGEDPALSL 268 (374)
Q Consensus 200 ~A~~~L~~e-GI~vN~TlI---FS~~QA~aaa~AGas~ISpFVGR-------Idd~~~~~~~d~~~~~~~~~~~d~Gv~~ 268 (374)
+.++.|.+. .+++-+-.+ ++.+-|..+.++|+..|-+- |+ +..+ +....+.+ ......+-|+..
T Consensus 168 ~~i~~l~~~~~vPVivK~~g~g~s~~~a~~l~~~Gvd~I~vs-G~GGt~~~~ie~~-r~~~~~~~---~~~~~~~~g~~t 242 (326)
T cd02811 168 ERIEELVKALSVPVIVKEVGFGISRETAKRLADAGVKAIDVA-GAGGTSWARVENY-RAKDSDQR---LAEYFADWGIPT 242 (326)
T ss_pred HHHHHHHHhcCCCEEEEecCCCCCHHHHHHHHHcCCCEEEEC-CCCCCcccccccc-cccccccc---cccccccccccH
Confidence 556666665 666666555 77888888889998776653 21 1110 00000000 000001235555
Q ss_pred HHHHHHHHHHcCccHHHHH-hccCChhcHHH--hhCCcEecccHHHHHHHHh
Q 017271 269 VSKAYNYIHKYGHKSKLMA-AAVRNKQDLFS--LLGVDYIIAPLKVLQSLKE 317 (374)
Q Consensus 269 v~~iy~~~k~~g~~T~vLa-AS~Rn~~~i~~--laG~D~lTipp~ll~~L~~ 317 (374)
+..+++..+..+ +..|++ -.+|+..++.+ .+|||.+-+.-.+|..+..
T Consensus 243 ~~~l~~~~~~~~-~ipIiasGGIr~~~dv~kal~lGAd~V~i~~~~L~~~~~ 293 (326)
T cd02811 243 AASLLEVRSALP-DLPLIASGGIRNGLDIAKALALGADLVGMAGPFLKAALE 293 (326)
T ss_pred HHHHHHHHHHcC-CCcEEEECCCCCHHHHHHHHHhCCCEEEEcHHHHHHHhc
Confidence 555555444332 455665 45699999987 5899999999999998866
No 68
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=69.15 E-value=48 Score=33.86 Aligned_cols=108 Identities=12% Similarity=0.105 Sum_probs=62.9
Q ss_pred ccCCHHHHHHHHHHHHHHhcCCCCCCCcEEEE-------ecCChhHHHHHHHHHH-cCceeEEeecCCHHHHHHHHHcCC
Q 017271 160 LAYDTHGIIRKVHDLLKLYSEIDVPPERLLFK-------IPSTWQGIEASRLLES-EGIQTHLTFVYSFAQAAAAAQAGA 231 (374)
Q Consensus 160 la~D~e~~I~eA~~L~~l~~~~gv~~~nVlIK-------IPaT~eGi~A~~~L~~-eGI~vN~TlIFS~~QA~aaa~AGa 231 (374)
....+++-++-++.|.++ || +.|=+= +|...+--++++.+.. .+..+. .++-.......|.++|+
T Consensus 63 ~~~s~e~Ki~ia~~L~~~----GV--~~IEvGs~vspk~vPqmad~~ev~~~i~~~~~~~~~-~l~~n~~die~A~~~g~ 135 (347)
T PLN02746 63 NIVPTSVKVELIQRLVSS----GL--PVVEATSFVSPKWVPQLADAKDVMAAVRNLEGARFP-VLTPNLKGFEAAIAAGA 135 (347)
T ss_pred CCCCHHHHHHHHHHHHHc----CC--CEEEECCCcCcccccccccHHHHHHHHHhccCCcee-EEcCCHHHHHHHHHcCc
Confidence 456677777766666665 34 333333 3333333333444433 244332 23447888888999999
Q ss_pred cEEEechhhhhhhhhcCCCCccchhhhccCCCcHHHHHHHHHHHHHHcCccH
Q 017271 232 SVIQIFVGRLRDWARNHSGDPEIDDALKRGEDPALSLVSKAYNYIHKYGHKS 283 (374)
Q Consensus 232 s~ISpFVGRIdd~~~~~~~d~~~~~~~~~~~d~Gv~~v~~iy~~~k~~g~~T 283 (374)
..|..|++==+-+.+++.. ......++.++++.++.+++|.+.
T Consensus 136 ~~v~i~~s~Sd~h~~~n~~---------~t~~e~l~~~~~~v~~Ak~~Gl~v 178 (347)
T PLN02746 136 KEVAVFASASESFSKSNIN---------CSIEESLVRYREVALAAKKHSIPV 178 (347)
T ss_pred CEEEEEEecCHHHHHHHhC---------CCHHHHHHHHHHHHHHHHHcCCeE
Confidence 9999887543333322221 111246788888999999998764
No 69
>PRK00507 deoxyribose-phosphate aldolase; Provisional
Probab=69.10 E-value=91 Score=29.69 Aligned_cols=154 Identities=19% Similarity=0.207 Sum_probs=90.9
Q ss_pred hHHHHHHHHhcCCCCeEEEEecCCccCC-HHHHHHHHHHHHHHh-cCCCCCCCcEEEEecCCh-----hHHHHHHHHHH-
Q 017271 136 ALVNVGGDLAKMVPGRVSTEVDARLAYD-THGIIRKVHDLLKLY-SEIDVPPERLLFKIPSTW-----QGIEASRLLES- 207 (374)
Q Consensus 136 ~~v~~g~eil~~v~G~VS~EVdp~la~D-~e~~I~eA~~L~~l~-~~~gv~~~nVlIKIPaT~-----eGi~A~~~L~~- 207 (374)
.++.++++.+++-+-+|..=|+=.++.+ ++.-+.++++.++.| .++ .++|-+.+-. .-.+.++++.+
T Consensus 44 ~~v~~a~~~l~~~~v~v~tVigFP~G~~~~~~K~~e~~~Ai~~GA~Ei-----D~Vin~~~~~~g~~~~v~~ei~~v~~~ 118 (221)
T PRK00507 44 SYVKLAAELLKGSDVKVCTVIGFPLGANTTAVKAFEAKDAIANGADEI-----DMVINIGALKSGDWDAVEADIRAVVEA 118 (221)
T ss_pred HHHHHHHHHhCCCCCeEEEEecccCCCChHHHHHHHHHHHHHcCCceE-----eeeccHHHhcCCCHHHHHHHHHHHHHh
Confidence 5566777777665556666665445555 455556777777765 222 2444333322 22334444443
Q ss_pred -cCceeEE---eecCCHHHHHH----HHHcCCcEEEechhhhhhhhhcCCCCccchhhhccCCCcHHHHHHHHHHHHHHc
Q 017271 208 -EGIQTHL---TFVYSFAQAAA----AAQAGASVIQIFVGRLRDWARNHSGDPEIDDALKRGEDPALSLVSKAYNYIHKY 279 (374)
Q Consensus 208 -eGI~vN~---TlIFS~~QA~a----aa~AGas~ISpFVGRIdd~~~~~~~d~~~~~~~~~~~d~Gv~~v~~iy~~~k~~ 279 (374)
.|+.+=+ |-..+-+|-.. |.++|+.+|----|.-. .| .-+..++.+++..
T Consensus 119 ~~~~~lKvIlEt~~L~~e~i~~a~~~~~~agadfIKTsTG~~~-----------------~g--at~~~v~~m~~~~--- 176 (221)
T PRK00507 119 AGGAVLKVIIETCLLTDEEKVKACEIAKEAGADFVKTSTGFST-----------------GG--ATVEDVKLMRETV--- 176 (221)
T ss_pred cCCceEEEEeecCcCCHHHHHHHHHHHHHhCCCEEEcCCCCCC-----------------CC--CCHHHHHHHHHHh---
Confidence 3666666 77778887544 44779987766555310 01 2345555554443
Q ss_pred CccHHHHHh-ccCChhcHHH--hhCCcEe-c-ccHHHHHHHH
Q 017271 280 GHKSKLMAA-AVRNKQDLFS--LLGVDYI-I-APLKVLQSLK 316 (374)
Q Consensus 280 g~~T~vLaA-S~Rn~~~i~~--laG~D~l-T-ipp~ll~~L~ 316 (374)
+.+..+.++ .+|+.+++.+ .+|++.+ | -..++++++.
T Consensus 177 ~~~~~IKasGGIrt~~~a~~~i~aGA~riGtS~~~~i~~~~~ 218 (221)
T PRK00507 177 GPRVGVKASGGIRTLEDALAMIEAGATRLGTSAGVAILKGLE 218 (221)
T ss_pred CCCceEEeeCCcCCHHHHHHHHHcCcceEccCcHHHHHhccc
Confidence 456667766 5899999998 5899999 3 4566666643
No 70
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=68.15 E-value=7.7 Score=38.53 Aligned_cols=69 Identities=22% Similarity=0.274 Sum_probs=51.7
Q ss_pred ecCCHHHHHHHHHcCCcEEEechhhhhhhhhcCCCCccchhhhccCCCcHHHHHHHHHHHHHHcCccHHHHHhccCChhc
Q 017271 216 FVYSFAQAAAAAQAGASVIQIFVGRLRDWARNHSGDPEIDDALKRGEDPALSLVSKAYNYIHKYGHKSKLMAAAVRNKQD 295 (374)
Q Consensus 216 lIFS~~QA~aaa~AGas~ISpFVGRIdd~~~~~~~d~~~~~~~~~~~d~Gv~~v~~iy~~~k~~g~~T~vLaAS~Rn~~~ 295 (374)
-+-+++|+..|+++|++||-.= +-+...++++...+++...+..+.++..-|.++
T Consensus 202 Ev~tleea~eA~~~GaD~I~LD-------------------------n~~~e~l~~av~~~~~~~~~i~leAsGGIt~~n 256 (288)
T PRK07428 202 ETETLEQVQEALEYGADIIMLD-------------------------NMPVDLMQQAVQLIRQQNPRVKIEASGNITLET 256 (288)
T ss_pred ECCCHHHHHHHHHcCCCEEEEC-------------------------CCCHHHHHHHHHHHHhcCCCeEEEEECCCCHHH
Confidence 4579999999999999988531 125677888888777655555555666789999
Q ss_pred HHH--hhCCcEecccH
Q 017271 296 LFS--LLGVDYIIAPL 309 (374)
Q Consensus 296 i~~--laG~D~lTipp 309 (374)
+.+ .+|+|++.+.-
T Consensus 257 i~~ya~tGvD~Isvgs 272 (288)
T PRK07428 257 IRAVAETGVDYISSSA 272 (288)
T ss_pred HHHHHHcCCCEEEEch
Confidence 976 68999996654
No 71
>cd03325 D-galactonate_dehydratase D-galactonate dehydratase catalyses the dehydration of galactonate to 2-keto-3-deoxygalactnate (KDGal), as part of the D-galactonate nonphosphorolytic catabolic Entner-Doudoroff pathway. D-galactonate dehydratase belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=67.56 E-value=58 Score=32.65 Aligned_cols=112 Identities=16% Similarity=0.119 Sum_probs=78.6
Q ss_pred HHHhcCCCCeEEEEecCCccCCHHHHHHHHHHHHHHhcCCCCCCCcEEEEecCChhHHHHHHHHHHc-CceeEEee-cCC
Q 017271 142 GDLAKMVPGRVSTEVDARLAYDTHGIIRKVHDLLKLYSEIDVPPERLLFKIPSTWQGIEASRLLESE-GIQTHLTF-VYS 219 (374)
Q Consensus 142 ~eil~~v~G~VS~EVdp~la~D~e~~I~eA~~L~~l~~~~gv~~~nVlIKIPaT~eGi~A~~~L~~e-GI~vN~Tl-IFS 219 (374)
+.+.+.+...+.+-||++-+++.++ |+++.+..++.|+ ..|-=|.-++-+...+.|.+. ++++-+-- +++
T Consensus 167 ~avr~~~g~~~~l~vDaN~~~~~~~----A~~~~~~l~~~~i----~~iEeP~~~~d~~~~~~L~~~~~~pia~dEs~~~ 238 (352)
T cd03325 167 AALREAVGPDIDIGVDFHGRVSKPM----AKDLAKELEPYRL----LFIEEPVLPENVEALAEIAARTTIPIATGERLFS 238 (352)
T ss_pred HHHHHhhCCCCEEEEECCCCCCHHH----HHHHHHhccccCC----cEEECCCCccCHHHHHHHHHhCCCCEEecccccC
Confidence 4555566557889999988888654 5444444333322 356667666667777788766 78876654 689
Q ss_pred HHHHHHHHHcC-CcEEEechhhhhhhhhcCCCCccchhhhccCCCcHHHHHHHHHHHHHHcCccH
Q 017271 220 FAQAAAAAQAG-ASVIQIFVGRLRDWARNHSGDPEIDDALKRGEDPALSLVSKAYNYIHKYGHKS 283 (374)
Q Consensus 220 ~~QA~aaa~AG-as~ISpFVGRIdd~~~~~~~d~~~~~~~~~~~d~Gv~~v~~iy~~~k~~g~~T 283 (374)
+.+...+.+.| +.++.|=++++ -|+..++++.++.+++|.++
T Consensus 239 ~~~~~~~~~~~~~d~v~~d~~~~----------------------GGit~~~~~~~lA~~~gi~~ 281 (352)
T cd03325 239 RWDFKELLEDGAVDIIQPDISHA----------------------GGITELKKIAAMAEAYDVAL 281 (352)
T ss_pred HHHHHHHHHhCCCCEEecCcccc----------------------CCHHHHHHHHHHHHHcCCcE
Confidence 99999988876 56777765554 27888999999999988663
No 72
>cd03322 rpsA The starvation sensing protein RpsA from E.coli and its homologs are lactonizing enzymes whose putative targets are homoserine lactone (HSL)-derivative. They are part of the mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subfamily share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and catalytic residues, a partially conserved Lys-X-Lys motif and a conserved histidine-aspartate dyad.
Probab=67.53 E-value=88 Score=31.54 Aligned_cols=115 Identities=13% Similarity=0.064 Sum_probs=81.1
Q ss_pred HHHHHHhcCCCCeEEEEecCCccCCHHHHHHHHHHHHHHhcCCCCCCCcEEEEecCChhHHHHHHHHHHc-CceeEEee-
Q 017271 139 NVGGDLAKMVPGRVSTEVDARLAYDTHGIIRKVHDLLKLYSEIDVPPERLLFKIPSTWQGIEASRLLESE-GIQTHLTF- 216 (374)
Q Consensus 139 ~~g~eil~~v~G~VS~EVdp~la~D~e~~I~eA~~L~~l~~~~gv~~~nVlIKIPaT~eGi~A~~~L~~e-GI~vN~Tl- 216 (374)
+..+.+.+.+...+.+-||++-+.+.++.++-++++.. +++ .+|-=|...+.+...++|.+. ++++.+--
T Consensus 151 ~~v~avre~~G~~~~l~vDaN~~w~~~~A~~~~~~l~~----~~l----~~iEeP~~~~d~~~~~~L~~~~~~pia~gE~ 222 (361)
T cd03322 151 KLFEAVREKFGFEFHLLHDVHHRLTPNQAARFGKDVEP----YRL----FWMEDPTPAENQEAFRLIRQHTATPLAVGEV 222 (361)
T ss_pred HHHHHHHhccCCCceEEEECCCCCCHHHHHHHHHHhhh----cCC----CEEECCCCcccHHHHHHHHhcCCCCEEeccC
Confidence 33445555665467788999888888765555555433 222 367778877778888888876 67765543
Q ss_pred cCCHHHHHHHHHcC-CcEEEechhhhhhhhhcCCCCccchhhhccCCCcHHHHHHHHHHHHHHcCccH
Q 017271 217 VYSFAQAAAAAQAG-ASVIQIFVGRLRDWARNHSGDPEIDDALKRGEDPALSLVSKAYNYIHKYGHKS 283 (374)
Q Consensus 217 IFS~~QA~aaa~AG-as~ISpFVGRIdd~~~~~~~d~~~~~~~~~~~d~Gv~~v~~iy~~~k~~g~~T 283 (374)
++++.++....++| +.++.|=++|+ -|+.-++++.++.+.+|.+.
T Consensus 223 ~~~~~~~~~~i~~~a~di~~~d~~~~----------------------GGit~~~~ia~~A~~~gi~~ 268 (361)
T cd03322 223 FNSIWDWQNLIQERLIDYIRTTVSHA----------------------GGITPARKIADLASLYGVRT 268 (361)
T ss_pred CcCHHHHHHHHHhCCCCEEecCcccc----------------------CCHHHHHHHHHHHHHcCCee
Confidence 68999999999887 67887776664 27888888888888887654
No 73
>cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain. LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=67.38 E-value=24 Score=36.06 Aligned_cols=103 Identities=22% Similarity=0.256 Sum_probs=69.6
Q ss_pred CChhHHHHHHHHHHcCceeEEeecCCHHHHHHHHHcCCcEEEe--chhhhhhhhhcCCCCccchhhhccCCCcHHHHHHH
Q 017271 194 STWQGIEASRLLESEGIQTHLTFVYSFAQAAAAAQAGASVIQI--FVGRLRDWARNHSGDPEIDDALKRGEDPALSLVSK 271 (374)
Q Consensus 194 aT~eGi~A~~~L~~eGI~vN~TlIFS~~QA~aaa~AGas~ISp--FVGRIdd~~~~~~~d~~~~~~~~~~~d~Gv~~v~~ 271 (374)
.||+=|+.++... ++++-+-.+.+++-|..|.++|+..|.. --||-.| +....+..+.+
T Consensus 208 ~~~~~l~~lr~~~--~~PvivKgv~~~~dA~~a~~~G~d~I~vsnhGGr~ld-----------------~~~~~~~~l~~ 268 (351)
T cd04737 208 LSPADIEFIAKIS--GLPVIVKGIQSPEDADVAINAGADGIWVSNHGGRQLD-----------------GGPASFDSLPE 268 (351)
T ss_pred CCHHHHHHHHHHh--CCcEEEecCCCHHHHHHHHHcCCCEEEEeCCCCccCC-----------------CCchHHHHHHH
Confidence 4787776666543 6777777789999999999999887765 4443321 01123444444
Q ss_pred HHHHHHHcCccHHHH-HhccCChhcHHH--hhCCcEecccHHHHHHHHhC
Q 017271 272 AYNYIHKYGHKSKLM-AAAVRNKQDLFS--LLGVDYIIAPLKVLQSLKES 318 (374)
Q Consensus 272 iy~~~k~~g~~T~vL-aAS~Rn~~~i~~--laG~D~lTipp~ll~~L~~~ 318 (374)
+. +..+.+..|+ .-.+|+-.++++ .+|+|.+-+.-.++..+...
T Consensus 269 i~---~a~~~~i~vi~dGGIr~g~Di~kaLalGA~~V~iGr~~l~~la~~ 315 (351)
T cd04737 269 IA---EAVNHRVPIIFDSGVRRGEHVFKALASGADAVAVGRPVLYGLALG 315 (351)
T ss_pred HH---HHhCCCCeEEEECCCCCHHHHHHHHHcCCCEEEECHHHHHHHhhc
Confidence 43 3333345555 467889999987 58999999988888877543
No 74
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=67.36 E-value=15 Score=38.70 Aligned_cols=127 Identities=17% Similarity=0.219 Sum_probs=76.5
Q ss_pred HHHHHHHHHHHhcCCCCCCCcEEEEec-CCh-hHHHHHHHHHHc--CceeEEeecCCHHHHHHHHHcCCcEEEechhhhh
Q 017271 167 IIRKVHDLLKLYSEIDVPPERLLFKIP-STW-QGIEASRLLESE--GIQTHLTFVYSFAQAAAAAQAGASVIQIFVGRLR 242 (374)
Q Consensus 167 ~I~eA~~L~~l~~~~gv~~~nVlIKIP-aT~-eGi~A~~~L~~e--GI~vN~TlIFS~~QA~aaa~AGas~ISpFVGRId 242 (374)
.++.++.+++. |+ +-++|..+ .-. .=+..++.+.++ ++.+-+=-|.|.++|..+.++|+.+|..=+|.-.
T Consensus 229 ~~e~a~~L~~a----gv--dvivvD~a~g~~~~vl~~i~~i~~~~p~~~vi~g~v~t~e~a~~l~~aGad~i~vg~g~gs 302 (486)
T PRK05567 229 NEERAEALVEA----GV--DVLVVDTAHGHSEGVLDRVREIKAKYPDVQIIAGNVATAEAARALIEAGADAVKVGIGPGS 302 (486)
T ss_pred hHHHHHHHHHh----CC--CEEEEECCCCcchhHHHHHHHHHhhCCCCCEEEeccCCHHHHHHHHHcCCCEEEECCCCCc
Confidence 36777777774 34 33444433 111 236678888876 6888889999999999999999999864223210
Q ss_pred hhhhcCCCCccchhhhccCCCcHHHHHHHHHHHHHHcCccHHHHH-hccCChhcHHH--hhCCcEecccHH
Q 017271 243 DWARNHSGDPEIDDALKRGEDPALSLVSKAYNYIHKYGHKSKLMA-AAVRNKQDLFS--LLGVDYIIAPLK 310 (374)
Q Consensus 243 d~~~~~~~d~~~~~~~~~~~d~Gv~~v~~iy~~~k~~g~~T~vLa-AS~Rn~~~i~~--laG~D~lTipp~ 310 (374)
. +.. ... ...| -|-+..+.++.+..++++ ..+++ -.+|+..++.. .+|+|.+.+.-.
T Consensus 303 ~----~~~-r~~---~~~g-~p~~~~~~~~~~~~~~~~--~~viadGGi~~~~di~kAla~GA~~v~~G~~ 362 (486)
T PRK05567 303 I----CTT-RIV---AGVG-VPQITAIADAAEAAKKYG--IPVIADGGIRYSGDIAKALAAGASAVMLGSM 362 (486)
T ss_pred c----ccc-eee---cCCC-cCHHHHHHHHHHHhccCC--CeEEEcCCCCCHHHHHHHHHhCCCEEEECcc
Confidence 0 000 000 0001 133445555555444444 23333 47899999987 589999987754
No 75
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=67.24 E-value=28 Score=37.92 Aligned_cols=96 Identities=17% Similarity=0.161 Sum_probs=61.9
Q ss_pred HHHHHHHhcCCCCeEEEEecCCccCCHHHHHHHHHHHHHHhcCCCCCCCcEEEEecC---Ch-hHHHHHHHHHH-----c
Q 017271 138 VNVGGDLAKMVPGRVSTEVDARLAYDTHGIIRKVHDLLKLYSEIDVPPERLLFKIPS---TW-QGIEASRLLES-----E 208 (374)
Q Consensus 138 v~~g~eil~~v~G~VS~EVdp~la~D~e~~I~eA~~L~~l~~~~gv~~~nVlIKIPa---T~-eGi~A~~~L~~-----e 208 (374)
+..+++.-..+.+.++...+|+ +|.+..++-++++.++ |. +.|+||=-+ |+ +-.+.++.|.+ -
T Consensus 124 i~~ak~~G~~v~~~i~~t~~p~--~~~~~~~~~~~~~~~~----Ga--d~I~i~Dt~G~~~P~~v~~lv~~lk~~~~~pi 195 (582)
T TIGR01108 124 IQAAKKHGAHAQGTISYTTSPV--HTLETYLDLAEELLEM----GV--DSICIKDMAGILTPKAAYELVSALKKRFGLPV 195 (582)
T ss_pred HHHHHHcCCEEEEEEEeccCCC--CCHHHHHHHHHHHHHc----CC--CEEEECCCCCCcCHHHHHHHHHHHHHhCCCce
Confidence 3334433223445566666664 6778888888887775 34 567776322 22 33344444443 3
Q ss_pred CceeEEeecCCHHHHHHHHHcCCcEEEechhhh
Q 017271 209 GIQTHLTFVYSFAQAAAAAQAGASVIQIFVGRL 241 (374)
Q Consensus 209 GI~vN~TlIFS~~QA~aaa~AGas~ISpFVGRI 241 (374)
|+|++-|.=+.+.-+++|++||+.+|.-=++-+
T Consensus 196 ~~H~Hnt~Gla~An~laAveaGa~~vd~ai~Gl 228 (582)
T TIGR01108 196 HLHSHATTGMAEMALLKAIEAGADGIDTAISSM 228 (582)
T ss_pred EEEecCCCCcHHHHHHHHHHhCCCEEEeccccc
Confidence 789999999999999999999998776555444
No 76
>PRK06096 molybdenum transport protein ModD; Provisional
Probab=67.12 E-value=11 Score=37.31 Aligned_cols=83 Identities=17% Similarity=0.106 Sum_probs=55.3
Q ss_pred HHHHHHHHc--CceeEEeecCCHHHHHHHHHcCCcEEEechhhhhhhhhcCCCCccchhhhccCCCcHHHHHHHHHHHHH
Q 017271 200 EASRLLESE--GIQTHLTFVYSFAQAAAAAQAGASVIQIFVGRLRDWARNHSGDPEIDDALKRGEDPALSLVSKAYNYIH 277 (374)
Q Consensus 200 ~A~~~L~~e--GI~vN~TlIFS~~QA~aaa~AGas~ISpFVGRIdd~~~~~~~d~~~~~~~~~~~d~Gv~~v~~iy~~~k 277 (374)
+|++.+.+. ..++-+ -+-+++|+..++++|+.+|-. |.+ ....++++.++.+
T Consensus 178 ~av~~~r~~~~~~kIeV-Ev~tleqa~ea~~agaDiI~L-----Dn~--------------------~~e~l~~av~~~~ 231 (284)
T PRK06096 178 GAINQLRRHAPEKKIVV-EADTPKEAIAALRAQPDVLQL-----DKF--------------------SPQQATEIAQIAP 231 (284)
T ss_pred HHHHHHHHhCCCCCEEE-ECCCHHHHHHHHHcCCCEEEE-----CCC--------------------CHHHHHHHHHHhh
Confidence 345555543 233322 235999999999999998865 221 2445666667666
Q ss_pred HcCccHHHHHhccCChhcHHH--hhCCcEeccc
Q 017271 278 KYGHKSKLMAAAVRNKQDLFS--LLGVDYIIAP 308 (374)
Q Consensus 278 ~~g~~T~vLaAS~Rn~~~i~~--laG~D~lTip 308 (374)
+.+.+..+-++..-|.+++.+ .+|+|++.+.
T Consensus 232 ~~~~~~~leaSGGI~~~ni~~yA~tGvD~Is~g 264 (284)
T PRK06096 232 SLAPHCTLSLAGGINLNTLKNYADCGIRLFITS 264 (284)
T ss_pred ccCCCeEEEEECCCCHHHHHHHHhcCCCEEEEC
Confidence 544566666777889999976 7899998554
No 77
>cd03329 MR_like_4 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 4. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=67.10 E-value=73 Score=32.13 Aligned_cols=112 Identities=16% Similarity=0.108 Sum_probs=79.1
Q ss_pred HHHhcCCCCeEEEEecCCccCCHHHHHHHHHHHHHHhcCCCCCCCcEEEEecCChhHHHHHHHHHHc-CceeEEee-cCC
Q 017271 142 GDLAKMVPGRVSTEVDARLAYDTHGIIRKVHDLLKLYSEIDVPPERLLFKIPSTWQGIEASRLLESE-GIQTHLTF-VYS 219 (374)
Q Consensus 142 ~eil~~v~G~VS~EVdp~la~D~e~~I~eA~~L~~l~~~~gv~~~nVlIKIPaT~eGi~A~~~L~~e-GI~vN~Tl-IFS 219 (374)
+.+.+.+...+.+=||++-+.+.+..++-++++.++ + -.+|-=|.....+...++|.+. +|++.+.- +++
T Consensus 180 ~~vR~~~G~~~~l~vDan~~~~~~~A~~~~~~l~~~----~----l~~iEeP~~~~d~~~~~~l~~~~~ipIa~~E~~~~ 251 (368)
T cd03329 180 LAVREAVGPDMRLMHDGAHWYSRADALRLGRALEEL----G----FFWYEDPLREASISSYRWLAEKLDIPILGTEHSRG 251 (368)
T ss_pred HHHHHHhCCCCeEEEECCCCcCHHHHHHHHHHhhhc----C----CCeEeCCCCchhHHHHHHHHhcCCCCEEccCcccC
Confidence 344455544577788988888877666655555442 2 2356667777778888899887 88886654 677
Q ss_pred -HHHHHHHHHcC-CcEEEechhhhhhhhhcCCCCccchhhhccCCCcHHHHHHHHHHHHHHcCccH
Q 017271 220 -FAQAAAAAQAG-ASVIQIFVGRLRDWARNHSGDPEIDDALKRGEDPALSLVSKAYNYIHKYGHKS 283 (374)
Q Consensus 220 -~~QA~aaa~AG-as~ISpFVGRIdd~~~~~~~d~~~~~~~~~~~d~Gv~~v~~iy~~~k~~g~~T 283 (374)
+.+.....++| +.++.|=++++ -|+.-++++-++.+.+|.++
T Consensus 252 ~~~~~~~~i~~~a~d~v~~d~~~~----------------------GGit~~~~ia~~a~~~gi~~ 295 (368)
T cd03329 252 ALESRADWVLAGATDFLRADVNLV----------------------GGITGAMKTAHLAEAFGLDV 295 (368)
T ss_pred cHHHHHHHHHhCCCCEEecCcccc----------------------CCHHHHHHHHHHHHHcCCEE
Confidence 88888888887 56777755554 27888888888888888664
No 78
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=66.92 E-value=28 Score=32.72 Aligned_cols=134 Identities=15% Similarity=0.125 Sum_probs=81.2
Q ss_pred ccCCHHHHHHHHHHHHHHhcCCCCCCCcEEEEecCC-------hhHHHHHHHHHHcCceeEE-eecCC-HHHHHHHHHcC
Q 017271 160 LAYDTHGIIRKVHDLLKLYSEIDVPPERLLFKIPST-------WQGIEASRLLESEGIQTHL-TFVYS-FAQAAAAAQAG 230 (374)
Q Consensus 160 la~D~e~~I~eA~~L~~l~~~~gv~~~nVlIKIPaT-------~eGi~A~~~L~~eGI~vN~-TlIFS-~~QA~aaa~AG 230 (374)
...++++.++-++.|.++ || +.|-+=-|.. ....+.++++.+.+-++.+ .++-. ...+..+.++|
T Consensus 14 ~~~s~e~~~~i~~~L~~~----GV--~~IEvg~~~~~~~~p~~~~~~~~i~~l~~~~~~~~~~~l~~~~~~~i~~a~~~g 87 (265)
T cd03174 14 ATFSTEDKLEIAEALDEA----GV--DSIEVGSGASPKAVPQMEDDWEVLRAIRKLVPNVKLQALVRNREKGIERALEAG 87 (265)
T ss_pred CCCCHHHHHHHHHHHHHc----CC--CEEEeccCcCccccccCCCHHHHHHHHHhccCCcEEEEEccCchhhHHHHHhCC
Confidence 345677777766666665 33 3444444443 4678888999888733333 23333 77788888999
Q ss_pred CcEEEechhhhhhhhhcCCCCccchhhhccCCCcHHHHHHHHHHHHHHcCccHHHHH--hcc--CChhcHHH------hh
Q 017271 231 ASVIQIFVGRLRDWARNHSGDPEIDDALKRGEDPALSLVSKAYNYIHKYGHKSKLMA--AAV--RNKQDLFS------LL 300 (374)
Q Consensus 231 as~ISpFVGRIdd~~~~~~~d~~~~~~~~~~~d~Gv~~v~~iy~~~k~~g~~T~vLa--AS~--Rn~~~i~~------la 300 (374)
+..+..++.--+-+-..+. ..+.+--+..+.+..++.+++|.+..+-. ++- .+.+++.+ .+
T Consensus 88 ~~~i~i~~~~s~~~~~~~~---------~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~ 158 (265)
T cd03174 88 VDEVRIFDSASETHSRKNL---------NKSREEDLENAEEAIEAAKEAGLEVEGSLEDAFGCKTDPEYVLEVAKALEEA 158 (265)
T ss_pred cCEEEEEEecCHHHHHHHh---------CCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeecCCCCCHHHHHHHHHHHHHc
Confidence 9988888865542221111 11112246778888888888887765543 333 45555532 47
Q ss_pred CCcEeccc
Q 017271 301 GVDYIIAP 308 (374)
Q Consensus 301 G~D~lTip 308 (374)
|+|.+.+.
T Consensus 159 g~~~i~l~ 166 (265)
T cd03174 159 GADEISLK 166 (265)
T ss_pred CCCEEEec
Confidence 98887655
No 79
>PF01070 FMN_dh: FMN-dependent dehydrogenase; InterPro: IPR000262 A number of oxidoreductases that act on alpha-hydroxy acids and which are FMN-containing flavoproteins have been shown [, , ] to be structurally related. These enzymes are: Lactate dehydrogenase (1.1.2.3 from EC), which consists of a dehydrogenase domain and a haem-binding domain called cytochrome b2 and which catalyses the conversion of lactate into pyruvate. Glycolate oxidase (1.1.3.15 from EC) ((S)-2-hydroxy-acid oxidase), a peroxisomal enzyme that catalyses the conversion of glycolate and oxygen to glyoxylate and hydrogen peroxide. Long chain alpha-hydroxy acid oxidase from rat (1.1.3.15 from EC), a peroxisomal enzyme. Lactate 2-monooxygenase (1.13.12.4 from EC) (lactate oxidase) from Mycobacterium smegmatis, which catalyses the conversion of lactate and oxygen to acetate, carbon dioxide and water. (S)-mandelate dehydrogenase from Pseudomonas putida (gene mdlB), which catalyses the reduction of (S)-mandelate to benzoylformate. The first step in the reaction mechanism of these enzymes is the abstraction of the proton from the alpha-carbon of the substrate producing a carbanion which can subsequently attach to the N5 atom of FMN. A conserved histidine has been shown [] to be involved in the removal of the proton. The region around this active site residue is highly conserved and contains an arginine residue which is involved in substrate binding.; GO: 0016491 oxidoreductase activity; PDB: 1VCG_C 1VCF_A 1P0N_B 1P0K_A 2A85_A 2A7P_A 3GIY_A 2A7N_A 3DH7_A 2RDU_A ....
Probab=66.54 E-value=14 Score=37.72 Aligned_cols=104 Identities=24% Similarity=0.317 Sum_probs=72.1
Q ss_pred CChhHHHHHHHHHHcCceeEEeecCCHHHHHHHHHcCCc--EEEechhhhhhhhhcCCCCccchhhhccCCCcHHHHHHH
Q 017271 194 STWQGIEASRLLESEGIQTHLTFVYSFAQAAAAAQAGAS--VIQIFVGRLRDWARNHSGDPEIDDALKRGEDPALSLVSK 271 (374)
Q Consensus 194 aT~eGi~A~~~L~~eGI~vN~TlIFS~~QA~aaa~AGas--~ISpFVGRIdd~~~~~~~d~~~~~~~~~~~d~Gv~~v~~ 271 (374)
.||+-|+.+++ .-++++-+--|++.+.|..|.++|+. ++|=-=||-.||+ .+.+....+
T Consensus 212 ~~w~~i~~~~~--~~~~pvivKgv~~~~da~~~~~~G~~~i~vs~hGGr~~d~~-----------------~~~~~~L~~ 272 (356)
T PF01070_consen 212 LTWDDIEWIRK--QWKLPVIVKGVLSPEDAKRAVDAGVDGIDVSNHGGRQLDWG-----------------PPTIDALPE 272 (356)
T ss_dssp -SHHHHHHHHH--HCSSEEEEEEE-SHHHHHHHHHTT-SEEEEESGTGTSSTTS------------------BHHHHHHH
T ss_pred CCHHHHHHHhc--ccCCceEEEecccHHHHHHHHhcCCCEEEecCCCcccCccc-----------------cccccccHH
Confidence 68866555544 24999999999999999999999975 5565677766664 245666666
Q ss_pred HHHHHHHcCccHHHHH-hccCChhcHHH--hhCCcEecccHHHHHHHHhCC
Q 017271 272 AYNYIHKYGHKSKLMA-AAVRNKQDLFS--LLGVDYIIAPLKVLQSLKESA 319 (374)
Q Consensus 272 iy~~~k~~g~~T~vLa-AS~Rn~~~i~~--laG~D~lTipp~ll~~L~~~~ 319 (374)
+.+.+ +.+..||+ -.+|+--+++. .+|+|.+-+.-.++..|...+
T Consensus 273 i~~~~---~~~~~i~~dgGir~g~Dv~kalaLGA~~v~igr~~l~~l~~~g 320 (356)
T PF01070_consen 273 IRAAV---GDDIPIIADGGIRRGLDVAKALALGADAVGIGRPFLYALAAGG 320 (356)
T ss_dssp HHHHH---TTSSEEEEESS--SHHHHHHHHHTT-SEEEESHHHHHHHHHHH
T ss_pred HHhhh---cCCeeEEEeCCCCCHHHHHHHHHcCCCeEEEccHHHHHHHHhh
Confidence 65544 45566664 56889999987 589999999999999886443
No 80
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=65.00 E-value=83 Score=31.55 Aligned_cols=99 Identities=17% Similarity=0.210 Sum_probs=66.1
Q ss_pred hHHHHHHHHHHcC--ceeEEeecCCHHHHHHHHHcCCcEEEech-------hhhhhhhhcCCCCccchhhhccCCCcHHH
Q 017271 197 QGIEASRLLESEG--IQTHLTFVYSFAQAAAAAQAGASVIQIFV-------GRLRDWARNHSGDPEIDDALKRGEDPALS 267 (374)
Q Consensus 197 eGi~A~~~L~~eG--I~vN~TlIFS~~QA~aaa~AGas~ISpFV-------GRIdd~~~~~~~d~~~~~~~~~~~d~Gv~ 267 (374)
.-++.++.+.+.+ +.+-+--+.+.++|..+.++|+.+|..=+ +|... ....|-+.
T Consensus 121 ~~~~~i~~ik~~~p~v~Vi~G~v~t~~~A~~l~~aGaD~I~vg~g~G~~~~t~~~~----------------g~g~p~~~ 184 (325)
T cd00381 121 YVIEMIKFIKKKYPNVDVIAGNVVTAEAARDLIDAGADGVKVGIGPGSICTTRIVT----------------GVGVPQAT 184 (325)
T ss_pred HHHHHHHHHHHHCCCceEEECCCCCHHHHHHHHhcCCCEEEECCCCCcCcccceeC----------------CCCCCHHH
Confidence 4477888888876 77777778999999999999999887521 22110 00124455
Q ss_pred HHHHHHHHHHHcCccHHHHHh-ccCChhcHHH--hhCCcEecccHHHHH
Q 017271 268 LVSKAYNYIHKYGHKSKLMAA-AVRNKQDLFS--LLGVDYIIAPLKVLQ 313 (374)
Q Consensus 268 ~v~~iy~~~k~~g~~T~vLaA-S~Rn~~~i~~--laG~D~lTipp~ll~ 313 (374)
.+.++.++.+.++ ..|+++ .+++..++.+ .+|+|.+.+.-.+..
T Consensus 185 ~i~~v~~~~~~~~--vpVIA~GGI~~~~di~kAla~GA~~VmiGt~fa~ 231 (325)
T cd00381 185 AVADVAAAARDYG--VPVIADGGIRTSGDIVKALAAGADAVMLGSLLAG 231 (325)
T ss_pred HHHHHHHHHhhcC--CcEEecCCCCCHHHHHHHHHcCCCEEEecchhcc
Confidence 5666666665544 345543 5778888876 589999988655443
No 81
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=64.20 E-value=38 Score=37.03 Aligned_cols=98 Identities=14% Similarity=0.103 Sum_probs=63.1
Q ss_pred hHHHHHHHHhcCCCCeEEEEecCCccCCHHHHHHHHHHHHHHhcCCCCCCCcEEEEecC---Ch-hHHHHHHHHHH----
Q 017271 136 ALVNVGGDLAKMVPGRVSTEVDARLAYDTHGIIRKVHDLLKLYSEIDVPPERLLFKIPS---TW-QGIEASRLLES---- 207 (374)
Q Consensus 136 ~~v~~g~eil~~v~G~VS~EVdp~la~D~e~~I~eA~~L~~l~~~~gv~~~nVlIKIPa---T~-eGi~A~~~L~~---- 207 (374)
..+..+++.-..+.|.|++..+|. ++.+..++-++.+.++ |+ +.|.||=.+ ++ +-.+.++.|.+
T Consensus 128 ~ai~~ak~~G~~~~~~i~yt~~p~--~~~~~~~~~a~~l~~~----Ga--d~i~i~Dt~G~l~P~~~~~lv~~lk~~~~~ 199 (593)
T PRK14040 128 TALKAVRKVGAHAQGTLSYTTSPV--HTLQTWVDLAKQLEDM----GV--DSLCIKDMAGLLKPYAAYELVSRIKKRVDV 199 (593)
T ss_pred HHHHHHHHcCCeEEEEEEEeeCCc--cCHHHHHHHHHHHHHc----CC--CEEEECCCCCCcCHHHHHHHHHHHHHhcCC
Confidence 344444443333456788888884 5667777777766654 44 678777332 22 23344444443
Q ss_pred -cCceeEEeecCCHHHHHHHHHcCCcEEEechhhh
Q 017271 208 -EGIQTHLTFVYSFAQAAAAAQAGASVIQIFVGRL 241 (374)
Q Consensus 208 -eGI~vN~TlIFS~~QA~aaa~AGas~ISpFVGRI 241 (374)
-|++++-|+=+...-+++|++||+.+|.-=++=+
T Consensus 200 pi~~H~Hnt~GlA~An~laAieAGa~~vD~ai~gl 234 (593)
T PRK14040 200 PLHLHCHATTGLSTATLLKAIEAGIDGVDTAISSM 234 (593)
T ss_pred eEEEEECCCCchHHHHHHHHHHcCCCEEEeccccc
Confidence 3789999999999999999999997765554443
No 82
>PRK15072 bifunctional D-altronate/D-mannonate dehydratase; Provisional
Probab=63.82 E-value=95 Score=31.88 Aligned_cols=115 Identities=10% Similarity=0.050 Sum_probs=81.5
Q ss_pred HHHHHHhcCCCCeEEEEecCCccCCHHHHHHHHHHHHHHhcCCCCCCCcEEEEecCChhHHHHHHHHHHc-CceeEEee-
Q 017271 139 NVGGDLAKMVPGRVSTEVDARLAYDTHGIIRKVHDLLKLYSEIDVPPERLLFKIPSTWQGIEASRLLESE-GIQTHLTF- 216 (374)
Q Consensus 139 ~~g~eil~~v~G~VS~EVdp~la~D~e~~I~eA~~L~~l~~~~gv~~~nVlIKIPaT~eGi~A~~~L~~e-GI~vN~Tl- 216 (374)
+..+.+.+.+...+.+-||++-+.+.++ |.++.+..++.++ .+|-=|..++.+...++|.+. +|++.+.-
T Consensus 194 ~~v~avre~~G~~~~l~vDaN~~w~~~~----A~~~~~~l~~~~l----~~iEeP~~~~d~~~~~~L~~~~~iPIa~dEs 265 (404)
T PRK15072 194 KLFEAVRNKFGFDLHLLHDVHHRLTPIE----AARLGKSLEPYRL----FWLEDPTPAENQEAFRLIRQHTTTPLAVGEV 265 (404)
T ss_pred HHHHHHHhhhCCCceEEEECCCCCCHHH----HHHHHHhccccCC----cEEECCCCccCHHHHHHHHhcCCCCEEeCcC
Confidence 3444566666557888899987788655 4444443333322 467778777778888888876 78877655
Q ss_pred cCCHHHHHHHHHcC-CcEEEechhhhhhhhhcCCCCccchhhhccCCCcHHHHHHHHHHHHHHcCccH
Q 017271 217 VYSFAQAAAAAQAG-ASVIQIFVGRLRDWARNHSGDPEIDDALKRGEDPALSLVSKAYNYIHKYGHKS 283 (374)
Q Consensus 217 IFS~~QA~aaa~AG-as~ISpFVGRIdd~~~~~~~d~~~~~~~~~~~d~Gv~~v~~iy~~~k~~g~~T 283 (374)
+|++.+.....++| +.++.|=++|+ -|+..++++.++-+.+|.+.
T Consensus 266 ~~~~~~~~~li~~~a~dii~~d~~~~----------------------GGit~~~kia~lA~~~gi~~ 311 (404)
T PRK15072 266 FNSIWDCKQLIEEQLIDYIRTTVTHA----------------------GGITHLRRIADFAALYQVRT 311 (404)
T ss_pred ccCHHHHHHHHHcCCCCEEecCcccc----------------------CcHHHHHHHHHHHHHcCCce
Confidence 68999999999987 57887766664 27888888888888877553
No 83
>cd03327 MR_like_2 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 2. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=63.55 E-value=86 Score=31.30 Aligned_cols=110 Identities=16% Similarity=0.174 Sum_probs=77.2
Q ss_pred HHhcCCCCeEEEEecCCccCCHHHHHHHHHHHHHHhcCCCCCCCcEEEEecCChhHHHHHHHHHHc-CceeEEe-ecCCH
Q 017271 143 DLAKMVPGRVSTEVDARLAYDTHGIIRKVHDLLKLYSEIDVPPERLLFKIPSTWQGIEASRLLESE-GIQTHLT-FVYSF 220 (374)
Q Consensus 143 eil~~v~G~VS~EVdp~la~D~e~~I~eA~~L~~l~~~~gv~~~nVlIKIPaT~eGi~A~~~L~~e-GI~vN~T-lIFS~ 220 (374)
.+.+.+...+.+-||++-+.+.+..++-++++.. +++ .+|-=|.-.+.+...+.|.+. +|++.+- -+++.
T Consensus 163 avr~~~g~~~~l~vDan~~~~~~~A~~~~~~l~~----~~~----~~iEeP~~~~d~~~~~~l~~~~~~pIa~gE~~~~~ 234 (341)
T cd03327 163 AIREAVGYDVDLMLDCYMSWNLNYAIKMARALEK----YEL----RWIEEPLIPDDIEGYAELKKATGIPISTGEHEYTV 234 (341)
T ss_pred HHHHHhCCCCcEEEECCCCCCHHHHHHHHHHhhh----cCC----ccccCCCCccCHHHHHHHHhcCCCCeEeccCccCH
Confidence 4444454467788888888887665555555543 222 355656666677777888776 7887664 46799
Q ss_pred HHHHHHHHcC-CcEEEechhhhhhhhhcCCCCccchhhhccCCCcHHHHHHHHHHHHHHcCcc
Q 017271 221 AQAAAAAQAG-ASVIQIFVGRLRDWARNHSGDPEIDDALKRGEDPALSLVSKAYNYIHKYGHK 282 (374)
Q Consensus 221 ~QA~aaa~AG-as~ISpFVGRIdd~~~~~~~d~~~~~~~~~~~d~Gv~~v~~iy~~~k~~g~~ 282 (374)
.+.....++| +.++.|=+.|+ -|+.-++++.++-+.+|.+
T Consensus 235 ~~~~~~i~~~a~d~i~~d~~~~----------------------GGit~~~~i~~~A~~~g~~ 275 (341)
T cd03327 235 YGFKRLLEGRAVDILQPDVNWV----------------------GGITELKKIAALAEAYGVP 275 (341)
T ss_pred HHHHHHHHcCCCCEEecCcccc----------------------CCHHHHHHHHHHHHHcCCe
Confidence 9988888876 67887776664 2788899999999988866
No 84
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=63.39 E-value=72 Score=32.35 Aligned_cols=108 Identities=16% Similarity=0.146 Sum_probs=68.1
Q ss_pred ccCCHHHHHHHHHHHHHHhcCCCCCCCcEEEEecCChhH-HHHHHHHHHcCceeEEee-c-CCHHHHHHHHHcCCcEEEe
Q 017271 160 LAYDTHGIIRKVHDLLKLYSEIDVPPERLLFKIPSTWQG-IEASRLLESEGIQTHLTF-V-YSFAQAAAAAQAGASVIQI 236 (374)
Q Consensus 160 la~D~e~~I~eA~~L~~l~~~~gv~~~nVlIKIPaT~eG-i~A~~~L~~eGI~vN~Tl-I-FS~~QA~aaa~AGas~ISp 236 (374)
..+.+++.++-++.|.++ || +.|-+=+|+.-+. .++++.+.+.+-++.++. + -..+....+.++|+..|..
T Consensus 18 ~~~s~~~k~~ia~~L~~~----Gv--~~IEvG~p~~~~~~~e~i~~i~~~~~~~~i~~~~r~~~~di~~a~~~g~~~i~i 91 (365)
T TIGR02660 18 VAFTAAEKLAIARALDEA----GV--DELEVGIPAMGEEERAVIRAIVALGLPARLMAWCRARDADIEAAARCGVDAVHI 91 (365)
T ss_pred CCCCHHHHHHHHHHHHHc----CC--CEEEEeCCCCCHHHHHHHHHHHHcCCCcEEEEEcCCCHHHHHHHHcCCcCEEEE
Confidence 456677666666666554 56 6677778876654 588888887754443333 3 3456666778889998888
Q ss_pred chhhhhhhhhcCCCCccchhhhccCCCcHHHHHHHHHHHHHHcCcc
Q 017271 237 FVGRLRDWARNHSGDPEIDDALKRGEDPALSLVSKAYNYIHKYGHK 282 (374)
Q Consensus 237 FVGRIdd~~~~~~~d~~~~~~~~~~~d~Gv~~v~~iy~~~k~~g~~ 282 (374)
|++-=+-+...+.+ ...+..+..+.++.++.+++|.+
T Consensus 92 ~~~~Sd~~~~~~~~---------~s~~e~l~~~~~~i~~ak~~g~~ 128 (365)
T TIGR02660 92 SIPVSDLQIEAKLR---------KDRAWVLERLARLVSFARDRGLF 128 (365)
T ss_pred EEccCHHHHHHHhC---------cCHHHHHHHHHHHHHHHHhCCCE
Confidence 87543322221111 11124677888888888988765
No 85
>PRK08208 coproporphyrinogen III oxidase; Validated
Probab=63.12 E-value=81 Score=32.68 Aligned_cols=80 Identities=15% Similarity=0.133 Sum_probs=49.9
Q ss_pred eEEEEecCCccCCHHHHHHHHHHHHHHhcCCCCCCCcEEEEecCC--------------hhHHHHHHHHHHcCce-eEEe
Q 017271 151 RVSTEVDARLAYDTHGIIRKVHDLLKLYSEIDVPPERLLFKIPST--------------WQGIEASRLLESEGIQ-THLT 215 (374)
Q Consensus 151 ~VS~EVdp~la~D~e~~I~eA~~L~~l~~~~gv~~~nVlIKIPaT--------------~eGi~A~~~L~~eGI~-vN~T 215 (374)
.+++|++|..- +++.++. .++.|+ .+|-|-|=+. .+-++|++.|.+.|+. +|+.
T Consensus 129 eitiE~~P~~l--t~e~l~~-------l~~~G~--~rvslGvQS~~~~~L~~l~R~~~~~~~~~ai~~l~~~g~~~i~~d 197 (430)
T PRK08208 129 PKSVETSPATT--TAEKLAL-------LAARGV--NRLSIGVQSFHDSELHALHRPQKRADVHQALEWIRAAGFPILNID 197 (430)
T ss_pred eEEEEeCcCcC--CHHHHHH-------HHHcCC--CEEEEecccCCHHHHHHhCCCCCHHHHHHHHHHHHHcCCCeEEEE
Confidence 57888887543 2222222 223344 4555555443 2468899999999997 6999
Q ss_pred ecCC-HHHHH--------HHHHcCCcEEEechhhh
Q 017271 216 FVYS-FAQAA--------AAAQAGASVIQIFVGRL 241 (374)
Q Consensus 216 lIFS-~~QA~--------aaa~AGas~ISpFVGRI 241 (374)
+||. +.|.. .+.+.|+.-|+.|.=++
T Consensus 198 lI~GlP~qt~e~~~~~l~~~~~l~~~~is~y~L~~ 232 (430)
T PRK08208 198 LIYGIPGQTHASWMESLDQALVYRPEELFLYPLYV 232 (430)
T ss_pred eecCCCCCCHHHHHHHHHHHHhCCCCEEEEccccc
Confidence 9999 33332 23456888999886444
No 86
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=63.05 E-value=51 Score=35.06 Aligned_cols=86 Identities=17% Similarity=0.111 Sum_probs=58.5
Q ss_pred CCCCeEEEEecCCccCCHHHHHHHHHHHHHHhcCCCCCCCcEEEEecC---Ch-hH---HHHHHHHHH--cCceeEEeec
Q 017271 147 MVPGRVSTEVDARLAYDTHGIIRKVHDLLKLYSEIDVPPERLLFKIPS---TW-QG---IEASRLLES--EGIQTHLTFV 217 (374)
Q Consensus 147 ~v~G~VS~EVdp~la~D~e~~I~eA~~L~~l~~~~gv~~~nVlIKIPa---T~-eG---i~A~~~L~~--eGI~vN~TlI 217 (374)
.+.+.++.+.+|. ++.+-.++.|+++.++ |+ +.|+||=.+ ++ +- ++++++... -|++++-|+=
T Consensus 147 ~~~~~i~yt~sp~--~t~~y~~~~a~~l~~~----Ga--d~I~IkDtaG~l~P~~v~~Lv~alk~~~~~pi~~H~Hnt~G 218 (468)
T PRK12581 147 EAQLCIAYTTSPV--HTLNYYLSLVKELVEM----GA--DSICIKDMAGILTPKAAKELVSGIKAMTNLPLIVHTHATSG 218 (468)
T ss_pred EEEEEEEEEeCCc--CcHHHHHHHHHHHHHc----CC--CEEEECCCCCCcCHHHHHHHHHHHHhccCCeEEEEeCCCCc
Confidence 3457899999985 6777788888887765 44 678887443 22 22 444443211 2688888888
Q ss_pred CCHHHHHHHHHcCCcEE----Eechhh
Q 017271 218 YSFAQAAAAAQAGASVI----QIFVGR 240 (374)
Q Consensus 218 FS~~QA~aaa~AGas~I----SpFVGR 240 (374)
..+.-+++|++||+.++ +||-+|
T Consensus 219 lA~An~laAieAGad~vD~ai~g~g~g 245 (468)
T PRK12581 219 ISQMTYLAAVEAGADRIDTALSPFSEG 245 (468)
T ss_pred cHHHHHHHHHHcCCCEEEeeccccCCC
Confidence 99999999999998654 455444
No 87
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=62.93 E-value=49 Score=36.22 Aligned_cols=93 Identities=14% Similarity=0.076 Sum_probs=62.1
Q ss_pred HHHHHHHHhcCCCCeEEEEecCCccCCHHHHHHHHHHHHHHhcCCCCCCCcEEEEecC---Ch-hHHHHHHHHHHc----
Q 017271 137 LVNVGGDLAKMVPGRVSTEVDARLAYDTHGIIRKVHDLLKLYSEIDVPPERLLFKIPS---TW-QGIEASRLLESE---- 208 (374)
Q Consensus 137 ~v~~g~eil~~v~G~VS~EVdp~la~D~e~~I~eA~~L~~l~~~~gv~~~nVlIKIPa---T~-eGi~A~~~L~~e---- 208 (374)
.....++.=..+.|.+++-.+| -++.+..++.|+++.++ |+ +.|.||=.+ |+ +-.+-++.|.++
T Consensus 128 ~i~~~k~~G~~~~~~i~yt~sp--~~t~e~~~~~ak~l~~~----Ga--d~I~IkDtaG~l~P~~v~~lv~alk~~~~ip 199 (596)
T PRK14042 128 AIDAIKSHKKHAQGAICYTTSP--VHTLDNFLELGKKLAEM----GC--DSIAIKDMAGLLTPTVTVELYAGLKQATGLP 199 (596)
T ss_pred HHHHHHHcCCEEEEEEEecCCC--CCCHHHHHHHHHHHHHc----CC--CEEEeCCcccCCCHHHHHHHHHHHHhhcCCE
Confidence 3444444433456788888888 47888888888888775 44 678888443 23 233344444443
Q ss_pred -CceeEEeecCCHHHHHHHHHcCCcEEEec
Q 017271 209 -GIQTHLTFVYSFAQAAAAAQAGASVIQIF 237 (374)
Q Consensus 209 -GI~vN~TlIFS~~QA~aaa~AGas~ISpF 237 (374)
+++++-|+=.+..-+++|++||+.+|--=
T Consensus 200 i~~H~Hnt~Gla~an~laAieaGad~iD~a 229 (596)
T PRK14042 200 VHLHSHSTSGLASICHYEAVLAGCNHIDTA 229 (596)
T ss_pred EEEEeCCCCCcHHHHHHHHHHhCCCEEEec
Confidence 67777788888889999999998765433
No 88
>cd03316 MR_like Mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. Members of the MR subgroup are mandelate racemase, D-glucarate/L-idarate dehydratase (GlucD), D-altronate/D-mannonate dehydratase , D-galactonate dehydratase (GalD) , D-gluconate dehydratase (GlcD), and L-rhamnonate dehydratase (RhamD).
Probab=62.88 E-value=91 Score=30.93 Aligned_cols=111 Identities=21% Similarity=0.218 Sum_probs=68.9
Q ss_pred HHHhcCCCCeEEEEecCCccCCHHHHHHHHHHHHHHhcCCCCCCCcEEEEecCChhHHHHHHHHHHc-CceeEE-eecCC
Q 017271 142 GDLAKMVPGRVSTEVDARLAYDTHGIIRKVHDLLKLYSEIDVPPERLLFKIPSTWQGIEASRLLESE-GIQTHL-TFVYS 219 (374)
Q Consensus 142 ~eil~~v~G~VS~EVdp~la~D~e~~I~eA~~L~~l~~~~gv~~~nVlIKIPaT~eGi~A~~~L~~e-GI~vN~-TlIFS 219 (374)
+.+.+.+...+-+=||++-+.+.++.++-++++ ++.|+ .+|==|.-..-+..++.|.+. +|++-+ --+++
T Consensus 180 ~~ir~~~g~~~~l~vDaN~~~~~~~a~~~~~~l----~~~~i----~~iEqP~~~~~~~~~~~l~~~~~ipi~~dE~~~~ 251 (357)
T cd03316 180 RAVREAVGPDVDLMVDANGRWDLAEAIRLARAL----EEYDL----FWFEEPVPPDDLEGLARLRQATSVPIAAGENLYT 251 (357)
T ss_pred HHHHHhhCCCCEEEEECCCCCCHHHHHHHHHHh----CccCC----CeEcCCCCccCHHHHHHHHHhCCCCEEecccccc
Confidence 344454533445555666666665544444433 33333 244445544456666667665 777666 34788
Q ss_pred HHHHHHHHHcC-CcEEEechhhhhhhhhcCCCCccchhhhccCCCcHHHHHHHHHHHHHHcCcc
Q 017271 220 FAQAAAAAQAG-ASVIQIFVGRLRDWARNHSGDPEIDDALKRGEDPALSLVSKAYNYIHKYGHK 282 (374)
Q Consensus 220 ~~QA~aaa~AG-as~ISpFVGRIdd~~~~~~~d~~~~~~~~~~~d~Gv~~v~~iy~~~k~~g~~ 282 (374)
+.++..+.+.| +.++.+=+.++ -|+.-+.++.++.+.+|.+
T Consensus 252 ~~~~~~~i~~~~~d~v~~k~~~~----------------------GGi~~~~~i~~~a~~~g~~ 293 (357)
T cd03316 252 RWEFRDLLEAGAVDIIQPDVTKV----------------------GGITEAKKIAALAEAHGVR 293 (357)
T ss_pred HHHHHHHHHhCCCCEEecCcccc----------------------CCHHHHHHHHHHHHHcCCe
Confidence 99998888776 56776655543 2788888998888888765
No 89
>PF09370 TIM-br_sig_trns: TIM-barrel signal transduction protein; InterPro: IPR009215 Members of this family are predicted to have a TIM barrel fold, based on PSI-BLAST analysis (iteration 4) and on SCOP prediction (using SMART). Interestingly, this novel domain also exists as an N-terminal domain of sigma54-dependent transcriptional activators (enhancer-binding proteins). Because sigma54 dependent activators typically have a three-domain structure: the variable N-terminal regulatory (activation) domain involved in signal recognition/receiving, the central AAA-type ATPase domain, and the DNA-binding domain (see PIRSF003187 from PIRSF, PIRSF005263 from PIRSF, PIRSF003184 from PIRSF, PIRSF005263 from PIRSF, IPR014443 from INTERPRO for details), the proteins of the current entry may be predicted to play a role in signal recognition/receiving and signal transduction.; PDB: 2P10_C.
Probab=62.85 E-value=56 Score=32.37 Aligned_cols=96 Identities=25% Similarity=0.359 Sum_probs=57.1
Q ss_pred hhhHHHHHHHHhcCCC-CeEEEEe---cCCccCCHHHHHHHHHHHHHHhcCCCCCCCcEEEEecCCh--hH---------
Q 017271 134 NKALVNVGGDLAKMVP-GRVSTEV---DARLAYDTHGIIRKVHDLLKLYSEIDVPPERLLFKIPSTW--QG--------- 198 (374)
Q Consensus 134 ~~~~v~~g~eil~~v~-G~VS~EV---dp~la~D~e~~I~eA~~L~~l~~~~gv~~~nVlIKIPaT~--eG--------- 198 (374)
+..+.++++|++..+. =+|-.=| ||. .|.+.-+++ |.++ |. .=++-.|..- .|
T Consensus 65 N~iv~em~~eiLp~v~~tPViaGv~atDP~--~~~~~fl~~---lk~~----Gf---~GV~NfPTvgliDG~fR~~LEe~ 132 (268)
T PF09370_consen 65 NEIVMEMAREILPVVKDTPVIAGVCATDPF--RDMDRFLDE---LKEL----GF---SGVQNFPTVGLIDGQFRQNLEET 132 (268)
T ss_dssp HHHHHHHHHHHGGG-SSS-EEEEE-TT-TT----HHHHHHH---HHHH----T----SEEEE-S-GGG--HHHHHHHHHT
T ss_pred hHHHHHHHHhhhhhccCCCEEEEecCcCCC--CcHHHHHHH---HHHh----CC---ceEEECCcceeeccHHHHHHHhc
Confidence 3467788899999885 4787777 443 234444444 4443 33 3345667532 22
Q ss_pred -------HHHHHHHHHcCceeEEeecCCHHHHHHHHHcCCcEEEechhhhh
Q 017271 199 -------IEASRLLESEGIQTHLTFVYSFAQAAAAAQAGASVIQIFVGRLR 242 (374)
Q Consensus 199 -------i~A~~~L~~eGI~vN~TlIFS~~QA~aaa~AGas~ISpFVGRId 242 (374)
++.++.-.+.|+-+ +-.+|+.+||.+-++||+++|.+.+|.-.
T Consensus 133 Gmgy~~EVemi~~A~~~gl~T-~~yvf~~e~A~~M~~AGaDiiv~H~GlT~ 182 (268)
T PF09370_consen 133 GMGYDREVEMIRKAHEKGLFT-TAYVFNEEQARAMAEAGADIIVAHMGLTT 182 (268)
T ss_dssp T--HHHHHHHHHHHHHTT-EE---EE-SHHHHHHHHHHT-SEEEEE-SS--
T ss_pred CCCHHHHHHHHHHHHHCCCee-eeeecCHHHHHHHHHcCCCEEEecCCccC
Confidence 67778888889866 55799999999999999999999998753
No 90
>PF01645 Glu_synthase: Conserved region in glutamate synthase; InterPro: IPR002932 Ferredoxin-dependent glutamate synthases have been implicated in a number of functions including photorespiration in Arabidopsis where they may also play a role in primary nitrogen assimilation in roots []. This region is expressed as a seperate subunit in the glutamate synthase alpha subunit from archaebacteria, or part of a large multidomain enzyme in other organisms. The aligned region of these proteins contains a putative FMN binding site and Fe-S cluster.; GO: 0015930 glutamate synthase activity, 0016638 oxidoreductase activity, acting on the CH-NH2 group of donors, 0006537 glutamate biosynthetic process, 0055114 oxidation-reduction process; PDB: 1EA0_A 2VDC_E 1OFE_A 1LLW_A 1OFD_A 1LLZ_A 1LM1_A.
Probab=62.78 E-value=31 Score=35.60 Aligned_cols=129 Identities=22% Similarity=0.305 Sum_probs=71.1
Q ss_pred HHhcCCCCeEEEEecCCc--cCCHHHHHHHHHHHHHHhcCCCCCCCcEEEEecCChhHHHHHHHHHHcCceeEEeecCCH
Q 017271 143 DLAKMVPGRVSTEVDARL--AYDTHGIIRKVHDLLKLYSEIDVPPERLLFKIPSTWQGIEASRLLESEGIQTHLTFVYSF 220 (374)
Q Consensus 143 eil~~v~G~VS~EVdp~l--a~D~e~~I~eA~~L~~l~~~~gv~~~nVlIKIPaT~eGi~A~~~L~~eGI~vN~TlIFS~ 220 (374)
++...-+| +.+--.|++ -++.|++.+...+|.++. +...|-||+++.. ++..+..
T Consensus 165 ~~R~~~~g-~~~iSP~~h~di~s~edl~~~I~~Lr~~~-----~~~pVgvKl~~~~-~~~~~~~---------------- 221 (368)
T PF01645_consen 165 RIRGVPPG-VDLISPPPHHDIYSIEDLAQLIEELRELN-----PGKPVGVKLVAGR-GVEDIAA---------------- 221 (368)
T ss_dssp HHHTS-TT---EE--SS-TT-SSHHHHHHHHHHHHHH------TTSEEEEEEE-ST-THHHHHH----------------
T ss_pred HHhCCCCC-CccccCCCCCCcCCHHHHHHHHHHHHhhC-----CCCcEEEEECCCC-cHHHHHH----------------
Confidence 34444456 333333333 356778877777788774 4578999999875 2222111
Q ss_pred HHHHHHHHcCCcEEEechhh----------hhhhhhcCCCCccchhhhccCCCcHHHHHHHHHHHHHHcCccHH--H-HH
Q 017271 221 AQAAAAAQAGASVIQIFVGR----------LRDWARNHSGDPEIDDALKRGEDPALSLVSKAYNYIHKYGHKSK--L-MA 287 (374)
Q Consensus 221 ~QA~aaa~AGas~ISpFVGR----------Idd~~~~~~~d~~~~~~~~~~~d~Gv~~v~~iy~~~k~~g~~T~--v-La 287 (374)
.++++|+++|.+-=+. +++|+ -|-+....+++++++++|.+-+ + ..
T Consensus 222 ----~~~~ag~D~ItIDG~~GGTGAap~~~~d~~G-----------------lP~~~~l~~a~~~L~~~glr~~V~Li~s 280 (368)
T PF01645_consen 222 ----GAAKAGADFITIDGAEGGTGAAPLTSMDHVG-----------------LPTEYALARAHQALVKNGLRDRVSLIAS 280 (368)
T ss_dssp ----HHHHTT-SEEEEE-TT---SSEECCHHHHC--------------------HHHHHHHHHHHHHCTT-CCCSEEEEE
T ss_pred ----hhhhccCCEEEEeCCCCCCCCCchhHHhhCC-----------------CcHHHHHHHHHHHHHHcCCCCceEEEEe
Confidence 1677888887653221 22221 1445667788888888876533 2 24
Q ss_pred hccCChhcHHH--hhCCcEecccHHHHHHH
Q 017271 288 AAVRNKQDLFS--LLGVDYIIAPLKVLQSL 315 (374)
Q Consensus 288 AS~Rn~~~i~~--laG~D~lTipp~ll~~L 315 (374)
-.+++..+++. .+|+|.+-+.-..+-.+
T Consensus 281 Ggl~t~~dv~kalaLGAD~v~igt~~liAl 310 (368)
T PF01645_consen 281 GGLRTGDDVAKALALGADAVYIGTAALIAL 310 (368)
T ss_dssp SS--SHHHHHHHHHCT-SEEE-SHHHHHHC
T ss_pred CCccCHHHHHHHHhcCCCeeEecchhhhhc
Confidence 55789999987 69999998777766555
No 91
>PRK05437 isopentenyl pyrophosphate isomerase; Provisional
Probab=62.52 E-value=99 Score=31.40 Aligned_cols=113 Identities=19% Similarity=0.174 Sum_probs=67.0
Q ss_pred HHHHHHHHHc-CceeEEeec---CCHHHHHHHHHcCCcEEEechhhh-hhhhh----cCCCCccchhhhccCCCcHHHHH
Q 017271 199 IEASRLLESE-GIQTHLTFV---YSFAQAAAAAQAGASVIQIFVGRL-RDWAR----NHSGDPEIDDALKRGEDPALSLV 269 (374)
Q Consensus 199 i~A~~~L~~e-GI~vN~TlI---FS~~QA~aaa~AGas~ISpFVGRI-dd~~~----~~~~d~~~~~~~~~~~d~Gv~~v 269 (374)
++.++.+.+. +++|-+-.+ .+.+-|..+.++|+.+|-+. |+= ..|.+ +.. +.. .+....+.|+..+
T Consensus 175 le~i~~i~~~~~vPVivK~~g~g~s~~~a~~l~~~Gvd~I~Vs-g~GGt~~~~ie~~R~~-~~~---~~~~~~~~g~pt~ 249 (352)
T PRK05437 175 LDNIAEIVSALPVPVIVKEVGFGISKETAKRLADAGVKAIDVA-GAGGTSWAAIENYRAR-DDR---LASYFADWGIPTA 249 (352)
T ss_pred HHHHHHHHHhhCCCEEEEeCCCCCcHHHHHHHHHcCCCEEEEC-CCCCCCccchhhhhhh-ccc---cccccccccCCHH
Confidence 3567777776 788877666 78888888889999887773 321 00000 000 000 0000012355545
Q ss_pred HHHHHHHHHcCccHHHH-HhccCChhcHHH--hhCCcEecccHHHHHHHHh
Q 017271 270 SKAYNYIHKYGHKSKLM-AAAVRNKQDLFS--LLGVDYIIAPLKVLQSLKE 317 (374)
Q Consensus 270 ~~iy~~~k~~g~~T~vL-aAS~Rn~~~i~~--laG~D~lTipp~ll~~L~~ 317 (374)
..+++..+.. .+..|+ .-.+|+..++.+ .+|||.+-+.-.+|..+..
T Consensus 250 ~~l~~i~~~~-~~ipvia~GGI~~~~dv~k~l~~GAd~v~ig~~~l~~~~~ 299 (352)
T PRK05437 250 QSLLEARSLL-PDLPIIASGGIRNGLDIAKALALGADAVGMAGPFLKAALE 299 (352)
T ss_pred HHHHHHHHhc-CCCeEEEECCCCCHHHHHHHHHcCCCEEEEhHHHHHHHHh
Confidence 5555444432 233455 356889999987 5899999999888887654
No 92
>PRK09261 phospho-2-dehydro-3-deoxyheptonate aldolase; Validated
Probab=62.34 E-value=38 Score=34.77 Aligned_cols=86 Identities=16% Similarity=0.107 Sum_probs=62.3
Q ss_pred HHHhcCCCCeEEEEecCCccCCHHHHHHHHHHHHHHhcCC----------CCCCCcEEEEecCC------------hhHH
Q 017271 142 GDLAKMVPGRVSTEVDARLAYDTHGIIRKVHDLLKLYSEI----------DVPPERLLFKIPST------------WQGI 199 (374)
Q Consensus 142 ~eil~~v~G~VS~EVdp~la~D~e~~I~eA~~L~~l~~~~----------gv~~~nVlIKIPaT------------~eGi 199 (374)
++|+.+-+.+.-+=+-|.-.+|.+..++-|++|.++.+++ +..+||--..--.- .+||
T Consensus 44 ~~Il~g~d~rllvI~GPCSIed~e~a~eyA~~Lk~l~~~~~d~l~ivmR~y~~KPRTs~g~kGl~~DP~ldgs~~i~~GL 123 (349)
T PRK09261 44 HNILHGKDDRLLVVVGPCSIHDPKAALEYARRLAKLREELKDKLEIVMRVYFEKPRTTVGWKGLINDPDLDGSFDINDGL 123 (349)
T ss_pred HHHHcCCCCCeEEEEcCCcCCCHHHHHHHHHHHHHHHhhhhcceEEEEEeccccCCCCCCCcCCCcCcCccccccHHHHH
Confidence 4777888889999999999999999999999999987642 22222221111111 5789
Q ss_pred HHHHHH----HHcCceeEEeecCCHHHHHHHHH
Q 017271 200 EASRLL----ESEGIQTHLTFVYSFAQAAAAAQ 228 (374)
Q Consensus 200 ~A~~~L----~~eGI~vN~TlIFS~~QA~aaa~ 228 (374)
+.+++| .+.|+++ +|-+..+.+....++
T Consensus 124 ~~~R~ll~~~~e~Glpv-atE~ld~~~~~y~~d 155 (349)
T PRK09261 124 RIARKLLLDINELGLPA-ATEFLDPITPQYIAD 155 (349)
T ss_pred HHHHHHHHHHHHhCCCe-EEEecccccHHHHHh
Confidence 999998 5569998 777777777666554
No 93
>cd04741 DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) class 1A FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=62.10 E-value=1.4e+02 Score=29.36 Aligned_cols=104 Identities=15% Similarity=-0.006 Sum_probs=63.9
Q ss_pred hHHHHHHHHhcCCCCeEEEEecCCccCCHHHHHHHHHHHHHHh-------------cCCCCC--CCcEEEEecC------
Q 017271 136 ALVNVGGDLAKMVPGRVSTEVDARLAYDTHGIIRKVHDLLKLY-------------SEIDVP--PERLLFKIPS------ 194 (374)
Q Consensus 136 ~~v~~g~eil~~v~G~VS~EVdp~la~D~e~~I~eA~~L~~l~-------------~~~gv~--~~nVlIKIPa------ 194 (374)
.+.++.+.+.+.++-+|.+-+.|.+ |.+.+.+-|+.+.+.. ....++ +.+..++-..
T Consensus 144 ~~~~i~~~v~~~~~iPv~vKl~p~~--~~~~~~~~a~~l~~~~~G~~gi~~~Nt~~~~~~id~~~~~~~~~~~~~~gG~S 221 (294)
T cd04741 144 ATLEYLTAVKAAYSIPVGVKTPPYT--DPAQFDTLAEALNAFACPISFITATNTLGNGLVLDPERETVVLKPKTGFGGLA 221 (294)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCC--CHHHHHHHHHHHhccccCCcEEEEEccCCccccccCCCCCcccCCCCCCCCcC
Confidence 4444555555556678999998864 5555554444443320 011123 2222221011
Q ss_pred ----ChhHHHHHHHHHHc---CceeEEee-cCCHHHHHHHHHcCCcEEEechhhh
Q 017271 195 ----TWQGIEASRLLESE---GIQTHLTF-VYSFAQAAAAAQAGASVIQIFVGRL 241 (374)
Q Consensus 195 ----T~eGi~A~~~L~~e---GI~vN~Tl-IFS~~QA~aaa~AGas~ISpFVGRI 241 (374)
.|..++.++++.+. +|++-..- |+|.++|+.+..+||+.+..+-+=+
T Consensus 222 G~~i~~~al~~v~~~~~~~~~~ipIig~GGI~s~~da~e~l~aGA~~Vqv~ta~~ 276 (294)
T cd04741 222 GAYLHPLALGNVRTFRRLLPSEIQIIGVGGVLDGRGAFRMRLAGASAVQVGTALG 276 (294)
T ss_pred chhhHHHHHHHHHHHHHhcCCCCCEEEeCCCCCHHHHHHHHHcCCCceeEchhhh
Confidence 33457788888664 37777654 9999999999999999988876655
No 94
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=61.87 E-value=45 Score=35.74 Aligned_cols=97 Identities=13% Similarity=0.210 Sum_probs=63.8
Q ss_pred HHHHHHHHhcCCCCeEEEEecCCccCCHHHHHHHHHHHHHHhcCCCCCCCcEEEEecC---Ch-hHHHHHHHHHH-----
Q 017271 137 LVNVGGDLAKMVPGRVSTEVDARLAYDTHGIIRKVHDLLKLYSEIDVPPERLLFKIPS---TW-QGIEASRLLES----- 207 (374)
Q Consensus 137 ~v~~g~eil~~v~G~VS~EVdp~la~D~e~~I~eA~~L~~l~~~~gv~~~nVlIKIPa---T~-eGi~A~~~L~~----- 207 (374)
.++..++.-....|.|++-++|. +|.+..++.|+++.++ |+ +.|.||=.+ |+ +-.+-++.|.+
T Consensus 129 ai~~vk~ag~~~~~~i~yt~sp~--~t~e~~~~~a~~l~~~----Ga--d~I~IkDtaGll~P~~~~~LV~~Lk~~~~~~ 200 (499)
T PRK12330 129 AMKAVKKVGKHAQGTICYTVSPI--HTVEGFVEQAKRLLDM----GA--DSICIKDMAALLKPQPAYDIVKGIKEACGED 200 (499)
T ss_pred HHHHHHHhCCeEEEEEEEecCCC--CCHHHHHHHHHHHHHc----CC--CEEEeCCCccCCCHHHHHHHHHHHHHhCCCC
Confidence 33333444344457888888885 6888888888888776 34 677777433 22 22333344433
Q ss_pred --cCceeEEeecCCHHHHHHHHHcCCcEEEechhhh
Q 017271 208 --EGIQTHLTFVYSFAQAAAAAQAGASVIQIFVGRL 241 (374)
Q Consensus 208 --eGI~vN~TlIFS~~QA~aaa~AGas~ISpFVGRI 241 (374)
-+++++-|+=....-+++|++||+.+|--=++-+
T Consensus 201 ipI~~H~Hnt~GlA~An~laAieAGad~vDtai~Gl 236 (499)
T PRK12330 201 TRINLHCHSTTGVTLVSLMKAIEAGVDVVDTAISSM 236 (499)
T ss_pred CeEEEEeCCCCCcHHHHHHHHHHcCCCEEEeecccc
Confidence 2577788888889999999999997766555544
No 95
>PRK12755 phospho-2-dehydro-3-deoxyheptonate aldolase; Provisional
Probab=61.52 E-value=42 Score=34.51 Aligned_cols=85 Identities=15% Similarity=0.076 Sum_probs=59.7
Q ss_pred HHHhcCCCCeEEEEecCCccCCHHHHHHHHHHHHHHhcCC----------CCCCCcEEEEecCC------------hhHH
Q 017271 142 GDLAKMVPGRVSTEVDARLAYDTHGIIRKVHDLLKLYSEI----------DVPPERLLFKIPST------------WQGI 199 (374)
Q Consensus 142 ~eil~~v~G~VS~EVdp~la~D~e~~I~eA~~L~~l~~~~----------gv~~~nVlIKIPaT------------~eGi 199 (374)
+.|+++.+.+.-+=|-|.-.+|.+..++-|++|.++.+++ +..+||--+.--.- .+||
T Consensus 45 ~~Il~g~d~rllvI~GPCSI~d~~~aleyA~~Lk~l~~~~~d~l~ivmR~y~eKPRT~~gwkGli~DP~ldgs~~i~~GL 124 (353)
T PRK12755 45 ADILHGRDDRLLVVVGPCSIHDPEAALEYARRLKALADELSDRLLIVMRVYFEKPRTTVGWKGLINDPHLDGSFDIEEGL 124 (353)
T ss_pred HHHhcCCCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhhhhcceEEEEEeccccCCCCcCCcCCCCCccccccccHHHHH
Confidence 3778888889999999999999999999999999997542 22222222211111 5788
Q ss_pred HHHHHH----HHcCceeEEeecCCHHHHHHHH
Q 017271 200 EASRLL----ESEGIQTHLTFVYSFAQAAAAA 227 (374)
Q Consensus 200 ~A~~~L----~~eGI~vN~TlIFS~~QA~aaa 227 (374)
+.+++| .+.|+++ +|-+..+.+....+
T Consensus 125 ~~~R~ll~~~~e~Glp~-atE~ld~~~~~y~~ 155 (353)
T PRK12755 125 RIARKLLLDLVELGLPL-ATEALDPISPQYLG 155 (353)
T ss_pred HHHHHHHHHHHHhCCCE-EEEecCcccHHHHH
Confidence 887777 4559988 67666666555544
No 96
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=60.76 E-value=48 Score=36.18 Aligned_cols=95 Identities=16% Similarity=0.155 Sum_probs=62.4
Q ss_pred HHHHHHHhcCCCCeEEEEecCCccCCHHHHHHHHHHHHHHhcCCCCCCCcEEEEecC---Ch-hHHHHHHHHHHc-----
Q 017271 138 VNVGGDLAKMVPGRVSTEVDARLAYDTHGIIRKVHDLLKLYSEIDVPPERLLFKIPS---TW-QGIEASRLLESE----- 208 (374)
Q Consensus 138 v~~g~eil~~v~G~VS~EVdp~la~D~e~~I~eA~~L~~l~~~~gv~~~nVlIKIPa---T~-eGi~A~~~L~~e----- 208 (374)
++.+++.-..+.+.++...+|. ++.+..++.++++.+. |+ +.|.||=.+ ++ +--+.++.|.++
T Consensus 129 i~~ak~~G~~v~~~i~~t~~p~--~t~~~~~~~a~~l~~~----Ga--d~I~i~Dt~G~~~P~~~~~lv~~lk~~~~~pi 200 (592)
T PRK09282 129 IKAAKKAGAHVQGTISYTTSPV--HTIEKYVELAKELEEM----GC--DSICIKDMAGLLTPYAAYELVKALKEEVDLPV 200 (592)
T ss_pred HHHHHHcCCEEEEEEEeccCCC--CCHHHHHHHHHHHHHc----CC--CEEEECCcCCCcCHHHHHHHHHHHHHhCCCeE
Confidence 3344443233456777777774 6788888888888765 34 667777322 22 233444455443
Q ss_pred CceeEEeecCCHHHHHHHHHcCCcEE----Eechhh
Q 017271 209 GIQTHLTFVYSFAQAAAAAQAGASVI----QIFVGR 240 (374)
Q Consensus 209 GI~vN~TlIFS~~QA~aaa~AGas~I----SpFVGR 240 (374)
|+|++-|.=+.+.-+++|++||+.+| +||-+|
T Consensus 201 ~~H~Hnt~Gla~An~laAv~aGad~vD~ai~g~g~~ 236 (592)
T PRK09282 201 QLHSHCTSGLAPMTYLKAVEAGVDIIDTAISPLAFG 236 (592)
T ss_pred EEEEcCCCCcHHHHHHHHHHhCCCEEEeeccccCCC
Confidence 88999999999999999999998655 455444
No 97
>PRK13347 coproporphyrinogen III oxidase; Provisional
Probab=60.19 E-value=30 Score=36.06 Aligned_cols=77 Identities=17% Similarity=0.324 Sum_probs=50.3
Q ss_pred CeEEEEecCCccCCHHHHHHHHHHHHHHhcCCCCCCCcEEEEecCCh--------------hHHHHHHHHHHcCce-eEE
Q 017271 150 GRVSTEVDARLAYDTHGIIRKVHDLLKLYSEIDVPPERLLFKIPSTW--------------QGIEASRLLESEGIQ-THL 214 (374)
Q Consensus 150 G~VS~EVdp~la~D~e~~I~eA~~L~~l~~~~gv~~~nVlIKIPaT~--------------eGi~A~~~L~~eGI~-vN~ 214 (374)
..+++|++|..- + ++.++. .++.|+ .+|-|-|-+.. +-++|++.+.+.|+. +|+
T Consensus 139 ~e~tie~~p~~l-t-~e~l~~-------L~~~G~--~rvsiGvQS~~~~vl~~l~R~~~~~~~~~ai~~lr~~G~~~v~~ 207 (453)
T PRK13347 139 AEIAVEIDPRTV-T-AEMLQA-------LAALGF--NRASFGVQDFDPQVQKAINRIQPEEMVARAVELLRAAGFESINF 207 (453)
T ss_pred ceEEEEeccccC-C-HHHHHH-------HHHcCC--CEEEECCCCCCHHHHHHhCCCCCHHHHHHHHHHHHhcCCCcEEE
Confidence 479999999743 2 223332 333345 56666665543 458899999999996 999
Q ss_pred eecCC-HHHHH--------HHHHcCCcEEEec
Q 017271 215 TFVYS-FAQAA--------AAAQAGASVIQIF 237 (374)
Q Consensus 215 TlIFS-~~QA~--------aaa~AGas~ISpF 237 (374)
.++|. +.|-. .+.+.|+.-|+.|
T Consensus 208 dli~GlPgqt~e~~~~tl~~~~~l~p~~i~~y 239 (453)
T PRK13347 208 DLIYGLPHQTVESFRETLDKVIALSPDRIAVF 239 (453)
T ss_pred eEEEeCCCCCHHHHHHHHHHHHhcCCCEEEEe
Confidence 99997 23322 2445688777776
No 98
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=59.76 E-value=62 Score=31.87 Aligned_cols=108 Identities=13% Similarity=0.136 Sum_probs=65.9
Q ss_pred ccCCHHHHHHHHHHHHHHhcCCCCCCCcEEEE-------ecCChhHHHHHHHHHHc-CceeEEeecCCHHHHHHHHHcCC
Q 017271 160 LAYDTHGIIRKVHDLLKLYSEIDVPPERLLFK-------IPSTWQGIEASRLLESE-GIQTHLTFVYSFAQAAAAAQAGA 231 (374)
Q Consensus 160 la~D~e~~I~eA~~L~~l~~~~gv~~~nVlIK-------IPaT~eGi~A~~~L~~e-GI~vN~TlIFS~~QA~aaa~AGa 231 (374)
....+++.++-|+.|.++ || +.|=+= +|++.+--++++.|.+. |.++-+ ++=......+|.++|.
T Consensus 21 ~~~s~e~k~~ia~~L~~~----Gv--~~IEvgsf~~p~~~p~~~d~~e~~~~l~~~~~~~~~~-l~~~~~~ie~A~~~g~ 93 (287)
T PRK05692 21 RFIPTADKIALIDRLSAA----GL--SYIEVASFVSPKWVPQMADAAEVMAGIQRRPGVTYAA-LTPNLKGLEAALAAGA 93 (287)
T ss_pred CCcCHHHHHHHHHHHHHc----CC--CEEEeCCCcCcccccccccHHHHHHhhhccCCCeEEE-EecCHHHHHHHHHcCC
Confidence 456677777666666665 45 444443 67755445566666543 444432 2346777788889999
Q ss_pred cEEEechhhhhhhhhcCCCCccchhhhccCCCcHHHHHHHHHHHHHHcCccH
Q 017271 232 SVIQIFVGRLRDWARNHSGDPEIDDALKRGEDPALSLVSKAYNYIHKYGHKS 283 (374)
Q Consensus 232 s~ISpFVGRIdd~~~~~~~d~~~~~~~~~~~d~Gv~~v~~iy~~~k~~g~~T 283 (374)
..+..|++--+-+..++.+ ...+..++.++++.++.+++|.+.
T Consensus 94 ~~v~i~~~~s~~~~~~n~~---------~~~~e~l~~~~~~v~~ak~~g~~v 136 (287)
T PRK05692 94 DEVAVFASASEAFSQKNIN---------CSIAESLERFEPVAEAAKQAGVRV 136 (287)
T ss_pred CEEEEEEecCHHHHHHHhC---------CCHHHHHHHHHHHHHHHHHcCCEE
Confidence 9998887654433222211 111236778888999999988653
No 99
>cd03326 MR_like_1 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 1. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=59.69 E-value=1.3e+02 Score=30.93 Aligned_cols=110 Identities=15% Similarity=0.108 Sum_probs=79.0
Q ss_pred HHhcCCCCeEEEEecCCccCCHHHHHHHHHHHHHHhcCCCCCCCcEEEEecCChhHHHHHHHHHHc-CceeEEe-ecCCH
Q 017271 143 DLAKMVPGRVSTEVDARLAYDTHGIIRKVHDLLKLYSEIDVPPERLLFKIPSTWQGIEASRLLESE-GIQTHLT-FVYSF 220 (374)
Q Consensus 143 eil~~v~G~VS~EVdp~la~D~e~~I~eA~~L~~l~~~~gv~~~nVlIKIPaT~eGi~A~~~L~~e-GI~vN~T-lIFS~ 220 (374)
.+.+.+...+.+-||++-+++.+..++-++.+. ++|+ .+|-=|.-++-+...++|.+. ++++-+- -+|++
T Consensus 197 avRe~~G~~~~l~vDaN~~w~~~~A~~~~~~l~----~~~~----~~iEeP~~~~d~~~~~~L~~~~~iPIa~gEs~~~~ 268 (385)
T cd03326 197 AALDVLGDGARLAVDANGRFDLETAIAYAKALA----PYGL----RWYEEPGDPLDYALQAELADHYDGPIATGENLFSL 268 (385)
T ss_pred HHHHhcCCCCeEEEECCCCCCHHHHHHHHHHhh----CcCC----CEEECCCCccCHHHHHHHHhhCCCCEEcCCCcCCH
Confidence 444455446788888888888776555544443 3322 366767777777788888776 6776554 36899
Q ss_pred HHHHHHHHcCC-----cEEEechhhhhhhhhcCCCCccchhhhccCCCcHHHHHHHHHHHHHHcCcc
Q 017271 221 AQAAAAAQAGA-----SVIQIFVGRLRDWARNHSGDPEIDDALKRGEDPALSLVSKAYNYIHKYGHK 282 (374)
Q Consensus 221 ~QA~aaa~AGa-----s~ISpFVGRIdd~~~~~~~d~~~~~~~~~~~d~Gv~~v~~iy~~~k~~g~~ 282 (374)
.++....+.|+ .++.|=++|+ -|+.-++++.++-+.+|.+
T Consensus 269 ~~~~~li~~~a~~~~~div~~d~~~~----------------------GGit~~~kia~lA~a~gi~ 313 (385)
T cd03326 269 QDARNLLRYGGMRPDRDVLQFDPGLS----------------------YGLPEYLRMLDVLEAHGWS 313 (385)
T ss_pred HHHHHHHHhCCccccCCEEEeCchhh----------------------CCHHHHHHHHHHHHHcCCC
Confidence 99999988875 7999888775 2788899999998888865
No 100
>TIGR00977 LeuA_rel 2-isopropylmalate synthase/homocitrate synthase family protein. This model represents uncharacterized proteins related to 2-isopropylmalate synthases and homocitrate synthases but phylogenetically distint. Each species represented in the seed alignment also has a member of a known family of 2-isopropylmalate synthases.
Probab=59.35 E-value=37 Score=36.46 Aligned_cols=136 Identities=14% Similarity=0.159 Sum_probs=84.4
Q ss_pred CCccCCHHHHHHHHHHHHHHhcCCCCCCCcEEEEecCChh-HHHHHHHHHHcCc-eeEEeecCCH----------HHHHH
Q 017271 158 ARLAYDTHGIIRKVHDLLKLYSEIDVPPERLLFKIPSTWQ-GIEASRLLESEGI-QTHLTFVYSF----------AQAAA 225 (374)
Q Consensus 158 p~la~D~e~~I~eA~~L~~l~~~~gv~~~nVlIKIPaT~e-Gi~A~~~L~~eGI-~vN~TlIFS~----------~QA~a 225 (374)
|...++.++-++-|+.|.++ || +.|=+=.|+..+ =.++++++.+.+. ++.++..... ....+
T Consensus 16 ~g~~~s~eeKl~Ia~~L~~~----GV--d~IE~G~p~~s~~d~~~v~~i~~~~~~~~~i~~~~r~~r~~~~~~~d~~~ea 89 (526)
T TIGR00977 16 EGVSFSLEDKIRIAERLDDL----GI--HYIEGGWPGANPKDVQFFWQLKEMNFKNAKIVAFCSTRRPHKKVEEDKMLQA 89 (526)
T ss_pred CCCCCCHHHHHHHHHHHHHc----CC--CEEEEeCCCCChHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchHHHHHH
Confidence 33567888777777777765 56 677777787654 4888888887776 3555444422 12455
Q ss_pred HHHcCCcEEEechhhhhhhhhcCCCCccchhhhccCCCcHHHHHHHHHHHHHHcCccHHHHHhc----cC-ChhcHHH--
Q 017271 226 AAQAGASVIQIFVGRLRDWARNHSGDPEIDDALKRGEDPALSLVSKAYNYIHKYGHKSKLMAAA----VR-NKQDLFS-- 298 (374)
Q Consensus 226 aa~AGas~ISpFVGRIdd~~~~~~~d~~~~~~~~~~~d~Gv~~v~~iy~~~k~~g~~T~vLaAS----~R-n~~~i~~-- 298 (374)
+.++|...|..|++=-+-+...+.. ...+.-++.+.++.+|.+.+|.+....+-. +| +++.+.+
T Consensus 90 ~~~~~~~~v~i~~~~Sd~h~~~~l~---------~s~ee~l~~~~~~v~~ak~~g~~V~~~~e~f~D~~r~~~~~l~~~~ 160 (526)
T TIGR00977 90 LIKAETPVVTIFGKSWDLHVLEALQ---------TTLEENLAMIYDTVAYLKRQGDEVIYDAEHFFDGYKANPEYALATL 160 (526)
T ss_pred HhcCCCCEEEEEeCCCHHHHHHHhC---------CCHHHHHHHHHHHHHHHHHcCCeEEEEeeeeeecccCCHHHHHHHH
Confidence 6677999999887654444332211 111346788888899999998775433322 23 3344432
Q ss_pred ----hhCCcEeccc
Q 017271 299 ----LLGVDYIIAP 308 (374)
Q Consensus 299 ----laG~D~lTip 308 (374)
.+|+|.+.++
T Consensus 161 ~~a~~aGad~i~i~ 174 (526)
T TIGR00977 161 ATAQQAGADWLVLC 174 (526)
T ss_pred HHHHhCCCCeEEEe
Confidence 4788876544
No 101
>TIGR01334 modD putative molybdenum utilization protein ModD. The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.
Probab=59.32 E-value=15 Score=36.23 Aligned_cols=82 Identities=18% Similarity=0.176 Sum_probs=54.6
Q ss_pred HHHHHHHc--CceeEEeecCCHHHHHHHHHcCCcEEEechhhhhhhhhcCCCCccchhhhccCCCcHHHHHHHHHHHHHH
Q 017271 201 ASRLLESE--GIQTHLTFVYSFAQAAAAAQAGASVIQIFVGRLRDWARNHSGDPEIDDALKRGEDPALSLVSKAYNYIHK 278 (374)
Q Consensus 201 A~~~L~~e--GI~vN~TlIFS~~QA~aaa~AGas~ISpFVGRIdd~~~~~~~d~~~~~~~~~~~d~Gv~~v~~iy~~~k~ 278 (374)
|++.+.+. +.++-+- +.+++|+..++++|+.+|-.= . -..+.++++.+++++
T Consensus 178 av~~~r~~~~~~kIeVE-v~tleea~ea~~~GaDiI~lD------n-------------------~~~e~l~~~v~~l~~ 231 (277)
T TIGR01334 178 AIGRLKQTAPERKITVE-ADTIEQALTVLQASPDILQLD------K-------------------FTPQQLHHLHERLKF 231 (277)
T ss_pred HHHHHHHhCCCCCEEEE-CCCHHHHHHHHHcCcCEEEEC------C-------------------CCHHHHHHHHHHHhc
Confidence 34444443 3344333 359999999999999887431 1 124456666677765
Q ss_pred cCccHHHHHhccCChhcHHH--hhCCcEeccc
Q 017271 279 YGHKSKLMAAAVRNKQDLFS--LLGVDYIIAP 308 (374)
Q Consensus 279 ~g~~T~vLaAS~Rn~~~i~~--laG~D~lTip 308 (374)
.+.+..+-++..-|.+++.+ .+|+|++.++
T Consensus 232 ~~~~~~leasGGI~~~ni~~ya~~GvD~is~g 263 (277)
T TIGR01334 232 FDHIPTLAAAGGINPENIADYIEAGIDLFITS 263 (277)
T ss_pred cCCCEEEEEECCCCHHHHHHHHhcCCCEEEeC
Confidence 55566667777889999976 7899998554
No 102
>PRK05742 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=58.52 E-value=18 Score=35.81 Aligned_cols=94 Identities=26% Similarity=0.291 Sum_probs=60.7
Q ss_pred CcEEEE------ecCChhHHHHHHHHHHcCceeEEeecCCHHHHHHHHHcCCcEEEechhhhhhhhhcCCCCccchhhhc
Q 017271 186 ERLLFK------IPSTWQGIEASRLLESEGIQTHLTFVYSFAQAAAAAQAGASVIQIFVGRLRDWARNHSGDPEIDDALK 259 (374)
Q Consensus 186 ~nVlIK------IPaT~eGi~A~~~L~~eGI~vN~TlIFS~~QA~aaa~AGas~ISpFVGRIdd~~~~~~~d~~~~~~~~ 259 (374)
+-+||| .....++++++++.. .+..+-+. +-+.+|+..|+++|++||- +|.
T Consensus 161 d~ilikdnHi~~~g~v~~av~~~r~~~-~~~~I~VE-v~tleea~eA~~~gaD~I~-----LD~---------------- 217 (277)
T PRK05742 161 DAFLIKENHIAACGGIAQAVAAAHRIA-PGKPVEVE-VESLDELRQALAAGADIVM-----LDE---------------- 217 (277)
T ss_pred ccEEecHHHHHHhCCHHHHHHHHHHhC-CCCeEEEE-eCCHHHHHHHHHcCCCEEE-----ECC----------------
Confidence 346666 223346677777753 34444444 5899999999999999992 111
Q ss_pred cCCCcHHHHHHHHHHHHHHcCccHHHHHhccCChhcHHH--hhCCcEecccH
Q 017271 260 RGEDPALSLVSKAYNYIHKYGHKSKLMAAAVRNKQDLFS--LLGVDYIIAPL 309 (374)
Q Consensus 260 ~~~d~Gv~~v~~iy~~~k~~g~~T~vLaAS~Rn~~~i~~--laG~D~lTipp 309 (374)
.+...++++.++.+ .+..+.+...-+.+++.+ .+|+|.+.+.-
T Consensus 218 ----~~~e~l~~~v~~~~---~~i~leAsGGIt~~ni~~~a~tGvD~Isvg~ 262 (277)
T PRK05742 218 ----LSLDDMREAVRLTA---GRAKLEASGGINESTLRVIAETGVDYISIGA 262 (277)
T ss_pred ----CCHHHHHHHHHHhC---CCCcEEEECCCCHHHHHHHHHcCCCEEEECh
Confidence 25566676666543 244455555678888876 68999986653
No 103
>PRK07379 coproporphyrinogen III oxidase; Provisional
Probab=58.03 E-value=49 Score=33.97 Aligned_cols=44 Identities=16% Similarity=0.198 Sum_probs=32.6
Q ss_pred hHHHHHHHHHHcCce-eEEeecCCHH-HHHH--------HHHcCCcEEEechhh
Q 017271 197 QGIEASRLLESEGIQ-THLTFVYSFA-QAAA--------AAQAGASVIQIFVGR 240 (374)
Q Consensus 197 eGi~A~~~L~~eGI~-vN~TlIFS~~-QA~a--------aa~AGas~ISpFVGR 240 (374)
+-++|++.+.+.|+. +|+.+||.+. |-.. +.+.++.-||.|.=.
T Consensus 152 ~~~~ai~~l~~~G~~~v~~dlI~GlPgqt~e~~~~tl~~~~~l~p~~is~y~L~ 205 (400)
T PRK07379 152 DIFAAVDLIHQAGIENFSLDLISGLPHQTLEDWQASLEAAIALNPTHLSCYDLV 205 (400)
T ss_pred HHHHHHHHHHHcCCCeEEEEeecCCCCCCHHHHHHHHHHHHcCCCCEEEEecce
Confidence 568899999999998 9999999853 4432 345578777776433
No 104
>PRK15440 L-rhamnonate dehydratase; Provisional
Probab=58.02 E-value=1.2e+02 Score=31.17 Aligned_cols=112 Identities=13% Similarity=0.052 Sum_probs=76.4
Q ss_pred HHHhcCCCCeEEEEecCCccCCHHHHHHHHHHHHHHhcCCCCCCCcEEEEecCChhHHHHHHHHHHc-CceeEE---eec
Q 017271 142 GDLAKMVPGRVSTEVDARLAYDTHGIIRKVHDLLKLYSEIDVPPERLLFKIPSTWQGIEASRLLESE-GIQTHL---TFV 217 (374)
Q Consensus 142 ~eil~~v~G~VS~EVdp~la~D~e~~I~eA~~L~~l~~~~gv~~~nVlIKIPaT~eGi~A~~~L~~e-GI~vN~---TlI 217 (374)
+.+.+.+...+.+-||++-+.+.++.++-++++.. +|+ ..|-=|.-+.-+...++|.+. .+++-+ --+
T Consensus 199 ~avReavG~d~~l~vDaN~~~~~~~Ai~~~~~le~----~~l----~wiEEPl~~~d~~~~~~L~~~~~~~i~ia~gE~~ 270 (394)
T PRK15440 199 ADMREKVGDDFWLMLDCWMSLDVNYATKLAHACAP----YGL----KWIEECLPPDDYWGYRELKRNAPAGMMVTSGEHE 270 (394)
T ss_pred HHHHHhhCCCCeEEEECCCCCCHHHHHHHHHHhhh----cCC----cceeCCCCcccHHHHHHHHHhCCCCCceecCCCc
Confidence 34445554467888999888888766665555543 332 245556666667777777665 333333 357
Q ss_pred CCHHHHHHHHHcC-CcEEEechhhhhhhhhcCCCCccchhhhccCCCcHHHHHHHHHHHHHHcCccH
Q 017271 218 YSFAQAAAAAQAG-ASVIQIFVGRLRDWARNHSGDPEIDDALKRGEDPALSLVSKAYNYIHKYGHKS 283 (374)
Q Consensus 218 FS~~QA~aaa~AG-as~ISpFVGRIdd~~~~~~~d~~~~~~~~~~~d~Gv~~v~~iy~~~k~~g~~T 283 (374)
|+..+.....++| +.++.|=+.++ -|+.-+++|.++-+.+|.+.
T Consensus 271 ~~~~~~~~li~~~a~Divq~d~~~~----------------------GGit~~~kia~lA~a~gi~~ 315 (394)
T PRK15440 271 ATLQGFRTLLEMGCIDIIQPDVGWC----------------------GGLTELVKIAALAKARGQLV 315 (394)
T ss_pred cCHHHHHHHHHcCCCCEEeCCcccc----------------------CCHHHHHHHHHHHHHcCCee
Confidence 8999999888886 68888877775 27888888888888887653
No 105
>smart00052 EAL Putative diguanylate phosphodiesterase. Putative diguanylate phosphodiesterase, present in a variety of bacteria.
Probab=57.63 E-value=1.5e+02 Score=26.80 Aligned_cols=136 Identities=21% Similarity=0.334 Sum_probs=83.8
Q ss_pred CCeEEEEecCCccCCHHHHHHHHHHHHHHhcCCCCCCCcEEEEecCCh-----hHH-HHHHHHHHcCceeEEeecCC-HH
Q 017271 149 PGRVSTEVDARLAYDTHGIIRKVHDLLKLYSEIDVPPERLLFKIPSTW-----QGI-EASRLLESEGIQTHLTFVYS-FA 221 (374)
Q Consensus 149 ~G~VS~EVdp~la~D~e~~I~eA~~L~~l~~~~gv~~~nVlIKIPaT~-----eGi-~A~~~L~~eGI~vN~TlIFS-~~ 221 (374)
+.++++-+++..-.+.+ .+.. +..+.++.++++.++++-|+... +.+ ..++.|.+.|+++-+.=+=+ ..
T Consensus 84 ~~~l~inl~~~~l~~~~-~~~~---l~~~l~~~~~~~~~lvlei~e~~~~~~~~~~~~~i~~l~~~G~~ialddfg~~~~ 159 (241)
T smart00052 84 PLRISINLSARQLISPD-LVPR---VLELLEETGLPPQRLELEITESVLLDDDESAVATLQRLRELGVRIALDDFGTGYS 159 (241)
T ss_pred CceEEEEcCHHHHcCch-HHHH---HHHHHHHcCCCHHHEEEEEeChhhhcChHHHHHHHHHHHHCCCEEEEeCCCCcHH
Confidence 46799999887655532 2333 44555556777779999999843 233 88899999999997765322 12
Q ss_pred HHHHHHHcCCcEEEechhhhhhhhhcCCCCccchhhhccCCCcHHHHHHHHHHHHHHcCccHHHHHhccCChhcHHH--h
Q 017271 222 QAAAAAQAGASVIQIFVGRLRDWARNHSGDPEIDDALKRGEDPALSLVSKAYNYIHKYGHKSKLMAAAVRNKQDLFS--L 299 (374)
Q Consensus 222 QA~aaa~AGas~ISpFVGRIdd~~~~~~~d~~~~~~~~~~~d~Gv~~v~~iy~~~k~~g~~T~vLaAS~Rn~~~i~~--l 299 (374)
.........+++|-.=-+-+.+... ....-..++.+.++.+..| .++++..+.+..+... .
T Consensus 160 ~~~~l~~l~~d~iKld~~~~~~~~~---------------~~~~~~~l~~l~~~~~~~~--~~via~gVe~~~~~~~l~~ 222 (241)
T smart00052 160 SLSYLKRLPVDLLKIDKSFVRDLQT---------------DPEDEAIVQSIIELAQKLG--LQVVAEGVETPEQLDLLRS 222 (241)
T ss_pred HHHHHHhCCCCeEEECHHHHhhhcc---------------ChhHHHHHHHHHHHHHHCC--CeEEEecCCCHHHHHHHHH
Confidence 2222334456666543333322110 0113445666667666665 5588888888888765 5
Q ss_pred hCCcEe
Q 017271 300 LGVDYI 305 (374)
Q Consensus 300 aG~D~l 305 (374)
.|+|++
T Consensus 223 ~Gi~~~ 228 (241)
T smart00052 223 LGCDYG 228 (241)
T ss_pred cCCCEE
Confidence 899875
No 106
>PRK12457 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=57.62 E-value=68 Score=32.01 Aligned_cols=123 Identities=15% Similarity=0.168 Sum_probs=75.4
Q ss_pred EEEEecCCccCCHHHHHHHHHHHHHHhcCCCCCCCcEEEE-----ecCC----------hhHHHHHHHHHHc-CceeEEe
Q 017271 152 VSTEVDARLAYDTHGIIRKVHDLLKLYSEIDVPPERLLFK-----IPST----------WQGIEASRLLESE-GIQTHLT 215 (374)
Q Consensus 152 VS~EVdp~la~D~e~~I~eA~~L~~l~~~~gv~~~nVlIK-----IPaT----------~eGi~A~~~L~~e-GI~vN~T 215 (374)
..+=--|.--.+.|.+++-|+++.++.++.|+ +++.| =|=| ++|++..++..++ |++| +|
T Consensus 17 ~~~iaGPCsvEs~e~~~~iA~~lk~i~~~~g~---~~~fK~sf~KapRTSp~sFqG~G~eeGL~iL~~vk~~~Glpv-vT 92 (281)
T PRK12457 17 FVLFGGINVLESLDFTLDVCGEYVEVTRKLGI---PFVFKASFDKANRSSIHSYRGVGLDEGLRIFEEVKARFGVPV-IT 92 (281)
T ss_pred eEEEecCCcccCHHHHHHHHHHHHHHHHHCCC---cEEeeeccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCce-EE
Confidence 33333455556688889999999988888877 45666 1222 4788888888777 9999 89
Q ss_pred ecCCHHHHHHHHHcCCcEEEe--chhhhhhhhhcCCCCccchhhhccCCCcHHHHHHHHHHHHHHcC
Q 017271 216 FVYSFAQAAAAAQAGASVIQI--FVGRLRDWARNHSGDPEIDDALKRGEDPALSLVSKAYNYIHKYG 280 (374)
Q Consensus 216 lIFS~~QA~aaa~AGas~ISp--FVGRIdd~~~~~~~d~~~~~~~~~~~d~Gv~~v~~iy~~~k~~g 280 (374)
=|....|+..+++. ++++.+ |--|--|..+.... ...--.+++|.-....-...+.+|+...|
T Consensus 93 eV~~~~~~~~~ae~-vDilQIgAr~~rntdLL~a~~~-t~kpV~lKrGqf~s~~e~~~aae~i~~~G 157 (281)
T PRK12457 93 DVHEVEQAAPVAEV-ADVLQVPAFLARQTDLVVAIAK-TGKPVNIKKPQFMSPTQMKHVVSKCREAG 157 (281)
T ss_pred EeCCHHHHHHHhhh-CeEEeeCchhhchHHHHHHHhc-cCCeEEecCCCcCCHHHHHHHHHHHHHcC
Confidence 99999999999987 555543 33343444432111 00000122331112344566666777665
No 107
>TIGR02534 mucon_cyclo muconate and chloromuconate cycloisomerases. This model encompasses muconate cycloisomerase (EC 5.5.1.1) and chloromuconate cycloisomerase (EC 5.5.1.7), enzymes that often overlap in specificity. It excludes more distantly related proteins such as mandelate racemase (5.1.2.2).
Probab=57.43 E-value=1.7e+02 Score=29.37 Aligned_cols=111 Identities=23% Similarity=0.169 Sum_probs=73.4
Q ss_pred HHHhcCCCCeEEEEecCCccCCHHHHHHHHHHHHHHhcCCCCCCCcEEEEecCChhHHHHHHHHHHc-CceeEEe-ecCC
Q 017271 142 GDLAKMVPGRVSTEVDARLAYDTHGIIRKVHDLLKLYSEIDVPPERLLFKIPSTWQGIEASRLLESE-GIQTHLT-FVYS 219 (374)
Q Consensus 142 ~eil~~v~G~VS~EVdp~la~D~e~~I~eA~~L~~l~~~~gv~~~nVlIKIPaT~eGi~A~~~L~~e-GI~vN~T-lIFS 219 (374)
+.+.+.+...+.+-+|++-+.+.+..++-+++|..+ + -.+|-=|.-...+...++|.+. ++++.+- -+++
T Consensus 178 ~~~re~~g~~~~l~~DaN~~~~~~~A~~~~~~l~~~----~----~~~iEeP~~~~d~~~~~~l~~~~~~pia~dE~~~~ 249 (368)
T TIGR02534 178 VAIAKALGDRASVRVDVNAAWDERTALHYLPQLADA----G----VELIEQPTPAENREALARLTRRFNVPIMADESVTG 249 (368)
T ss_pred HHHHHhcCCCcEEEEECCCCCCHHHHHHHHHHHHhc----C----hhheECCCCcccHHHHHHHHHhCCCCEEeCcccCC
Confidence 344455544577888888778877666665555442 2 2356666655555555666655 6776544 4789
Q ss_pred HHHHHHHHHcC-CcEEEechhhhhhhhhcCCCCccchhhhccCCCcHHHHHHHHHHHHHHcCcc
Q 017271 220 FAQAAAAAQAG-ASVIQIFVGRLRDWARNHSGDPEIDDALKRGEDPALSLVSKAYNYIHKYGHK 282 (374)
Q Consensus 220 ~~QA~aaa~AG-as~ISpFVGRIdd~~~~~~~d~~~~~~~~~~~d~Gv~~v~~iy~~~k~~g~~ 282 (374)
+.+....+++| +.++.|=+.++ -|+..++++..+-+.+|.+
T Consensus 250 ~~~~~~~~~~~~~d~~~~d~~~~----------------------GGi~~~~~i~~lA~~~gi~ 291 (368)
T TIGR02534 250 PADALAIAKASAADVFALKTTKS----------------------GGLLESKKIAAIAEAAGIA 291 (368)
T ss_pred HHHHHHHHHhCCCCEEEEccccc----------------------CCHHHHHHHHHHHHHcCCc
Confidence 99999888775 67776655543 2788888888888888765
No 108
>COG1891 Uncharacterized protein conserved in archaea [Function unknown]
Probab=57.10 E-value=26 Score=33.05 Aligned_cols=106 Identities=22% Similarity=0.235 Sum_probs=72.2
Q ss_pred CcEEEEecCCh-------hHHHHHHHHHHcCceeEEeec---C---CHHHHHH-HHHcCCcEEEechhhhhhhhhcCCCC
Q 017271 186 ERLLFKIPSTW-------QGIEASRLLESEGIQTHLTFV---Y---SFAQAAA-AAQAGASVIQIFVGRLRDWARNHSGD 251 (374)
Q Consensus 186 ~nVlIKIPaT~-------eGi~A~~~L~~eGI~vN~TlI---F---S~~QA~a-aa~AGas~ISpFVGRIdd~~~~~~~d 251 (374)
+=|=+|=|.-- -=|+.++++..+--.+.+|.= | +..||.. |+-+|+.||-+=.--+..
T Consensus 22 dIiDVKNP~EGSLGANFPWvIr~i~Ev~p~d~~vSAT~GDvpYKPGT~slAalGaav~GaDYiKVGLYg~kn-------- 93 (235)
T COG1891 22 DIIDVKNPAEGSLGANFPWVIREIREVVPEDQEVSATVGDVPYKPGTASLAALGAAVAGADYIKVGLYGTKN-------- 93 (235)
T ss_pred ceEeccCcccCcccCCChHHHHHHHHhCccceeeeeeecCCCCCCchHHHHHHHhHhhCCceEEEeeccccc--------
Confidence 34556766532 238899999888888888863 3 3344433 456799998653221111
Q ss_pred ccchhhhccCCCcHHHHHHHHHHHHHHcCccHHHHHhccCChhcH-----------HHhhCCcEecccH
Q 017271 252 PEIDDALKRGEDPALSLVSKAYNYIHKYGHKSKLMAAAVRNKQDL-----------FSLLGVDYIIAPL 309 (374)
Q Consensus 252 ~~~~~~~~~~~d~Gv~~v~~iy~~~k~~g~~T~vLaAS~Rn~~~i-----------~~laG~D~lTipp 309 (374)
+..++..++.+.+..|.+++..+|.+|......++ .+.+|||...+-.
T Consensus 94 ----------~~eA~e~m~~vvrAVkd~d~~k~VVAaGYaDa~Rvgsv~Pl~~P~vaa~ag~DvaMvDT 152 (235)
T COG1891 94 ----------EEEALEVMKNVVRAVKDFDPSKKVVAAGYADAHRVGSVSPLLLPEVAAEAGADVAMVDT 152 (235)
T ss_pred ----------HHHHHHHHHHHHHHHhccCCCceEEeccccchhhccCcCccccHHHHHhcCCCEEEEec
Confidence 12478899999999999999999999998876665 2468999875543
No 109
>cd03323 D-glucarate_dehydratase D-Glucarate dehydratase (GlucD) catalyzes the dehydration of both D-glucarate and L-idarate to form 5-keto-4-deoxy-D-glucarate (5-KDG) , the initial reaction of the catabolic pathway for (D)-glucarate. GlucD belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion.
Probab=57.05 E-value=1.5e+02 Score=30.50 Aligned_cols=108 Identities=16% Similarity=0.110 Sum_probs=71.7
Q ss_pred HHHhcCCCCeEEEEecCCccCCHHHHHHHHHHHHHHhcCCCCCCCcEEEEecCChhHHHHHHHHHHc-CceeEEe-ecCC
Q 017271 142 GDLAKMVPGRVSTEVDARLAYDTHGIIRKVHDLLKLYSEIDVPPERLLFKIPSTWQGIEASRLLESE-GIQTHLT-FVYS 219 (374)
Q Consensus 142 ~eil~~v~G~VS~EVdp~la~D~e~~I~eA~~L~~l~~~~gv~~~nVlIKIPaT~eGi~A~~~L~~e-GI~vN~T-lIFS 219 (374)
+.+.+.++ .+.+-||++-+++.+. |+++.+..++ ++ .+|-=|.. .+..+++|.+. ++++-+- .+++
T Consensus 205 ~avRea~~-~~~l~vDaN~~w~~~~----A~~~~~~l~~-~l----~~iEeP~~--d~~~~~~L~~~~~~PIa~dEs~~~ 272 (395)
T cd03323 205 KALAEAFP-GARLRLDPNGAWSLET----AIRLAKELEG-VL----AYLEDPCG--GREGMAEFRRATGLPLATNMIVTD 272 (395)
T ss_pred HHHHHhCC-CCcEEEeCCCCcCHHH----HHHHHHhcCc-CC----CEEECCCC--CHHHHHHHHHhcCCCEEcCCcccC
Confidence 34555564 5888899988888765 4444444332 22 24554543 56666666655 5665443 5789
Q ss_pred HHHHHHHHHcC-CcEEEechhhhhhhhhcCCCCccchhhhccCCCcHHHHHHHHHHHHHHcCccH
Q 017271 220 FAQAAAAAQAG-ASVIQIFVGRLRDWARNHSGDPEIDDALKRGEDPALSLVSKAYNYIHKYGHKS 283 (374)
Q Consensus 220 ~~QA~aaa~AG-as~ISpFVGRIdd~~~~~~~d~~~~~~~~~~~d~Gv~~v~~iy~~~k~~g~~T 283 (374)
..|+..+.++| +.++.|=++|+ -|+.-++++.++-+.+|.+.
T Consensus 273 ~~~~~~~i~~~avdil~~d~~~~----------------------GGit~~~kia~~A~~~gi~~ 315 (395)
T cd03323 273 FRQLGHAIQLNAVDIPLADHHFW----------------------GGMRGSVRVAQVCETWGLGW 315 (395)
T ss_pred HHHHHHHHHcCCCcEEeeccccc----------------------cCHHHHHHHHHHHHHcCCeE
Confidence 99999998887 67887766664 27888888888888887654
No 110
>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed
Probab=56.59 E-value=43 Score=34.43 Aligned_cols=84 Identities=17% Similarity=0.244 Sum_probs=62.1
Q ss_pred eEEEEecCC-ccCCHHHHHHHHHHHHHHhcCCCCCCCcEEEEecCChhHHHHHHHHHHc-CceeEEeecCCHHHHHHHHH
Q 017271 151 RVSTEVDAR-LAYDTHGIIRKVHDLLKLYSEIDVPPERLLFKIPSTWQGIEASRLLESE-GIQTHLTFVYSFAQAAAAAQ 228 (374)
Q Consensus 151 ~VS~EVdp~-la~D~e~~I~eA~~L~~l~~~~gv~~~nVlIKIPaT~eGi~A~~~L~~e-GI~vN~TlIFS~~QA~aaa~ 228 (374)
+|++|-.-. --.|.+++++|.++|.+..- +=|-|-+|. .+-.+|++++.+. .|++-+-.=|...-|+.|++
T Consensus 27 Pi~VQSMt~t~T~Dv~atv~Qi~~L~~aGc------eiVRvav~~-~~~a~al~~I~~~~~iPlvADIHFd~~lAl~a~~ 99 (360)
T PRK00366 27 PIVVQSMTNTDTADVEATVAQIKRLARAGC------EIVRVAVPD-MEAAAALPEIKKQLPVPLVADIHFDYRLALAAAE 99 (360)
T ss_pred cEEEEecCCCCchhHHHHHHHHHHHHHcCC------CEEEEccCC-HHHHHhHHHHHHcCCCCEEEecCCCHHHHHHHHH
Confidence 899995322 34689999999888887642 445555553 3455666666665 89999999999999999999
Q ss_pred cCCcEEEechhhh
Q 017271 229 AGASVIQIFVGRL 241 (374)
Q Consensus 229 AGas~ISpFVGRI 241 (374)
+|+.-+=.-=|-|
T Consensus 100 ~G~~~iRINPGNi 112 (360)
T PRK00366 100 AGADALRINPGNI 112 (360)
T ss_pred hCCCEEEECCCCC
Confidence 9988776555555
No 111
>PRK08446 coproporphyrinogen III oxidase; Provisional
Probab=56.11 E-value=2.3e+02 Score=28.50 Aligned_cols=45 Identities=13% Similarity=0.163 Sum_probs=31.9
Q ss_pred hHHHHHHHHHHcCc-eeEEeecCC-----HHHHHH----HHHcCCcEEEechhhh
Q 017271 197 QGIEASRLLESEGI-QTHLTFVYS-----FAQAAA----AAQAGASVIQIFVGRL 241 (374)
Q Consensus 197 eGi~A~~~L~~eGI-~vN~TlIFS-----~~QA~a----aa~AGas~ISpFVGRI 241 (374)
+-++|++.|.+.|+ ++|+.++|. .+.... +.+.|+.-||.|-=.+
T Consensus 135 ~~~~ai~~lr~~g~~~v~iDli~GlPgqt~~~~~~~l~~~~~l~~~~is~y~L~~ 189 (350)
T PRK08446 135 QIIKAIENAKKAGFENISIDLIYDTPLDNKKLLKEELKLAKELPINHLSAYSLTI 189 (350)
T ss_pred HHHHHHHHHHHcCCCEEEEEeecCCCCCCHHHHHHHHHHHHhcCCCEEEecccee
Confidence 55889999999999 599999995 333222 4456888777765333
No 112
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=55.75 E-value=64 Score=34.27 Aligned_cols=94 Identities=19% Similarity=0.217 Sum_probs=59.4
Q ss_pred HHHHHHHhcCCCCeEEEEecCCccCCHHHHHHHHHHHHHHhcCCCCCCCcEEEEecC---Ch-hHHHHHHHHHHc-----
Q 017271 138 VNVGGDLAKMVPGRVSTEVDARLAYDTHGIIRKVHDLLKLYSEIDVPPERLLFKIPS---TW-QGIEASRLLESE----- 208 (374)
Q Consensus 138 v~~g~eil~~v~G~VS~EVdp~la~D~e~~I~eA~~L~~l~~~~gv~~~nVlIKIPa---T~-eGi~A~~~L~~e----- 208 (374)
++.+++.-..+.|.++.-.+|+ ++.+..++-|+++.+. |+ ++|.||=.+ |+ +--+.++.|.++
T Consensus 128 i~~ak~~G~~v~~~i~~t~~p~--~t~e~~~~~a~~l~~~----Ga--d~I~i~Dt~G~l~P~~v~~Lv~~lk~~~~vpI 199 (467)
T PRK14041 128 IEVAKKHGAHVQGAISYTVSPV--HTLEYYLEFARELVDM----GV--DSICIKDMAGLLTPKRAYELVKALKKKFGVPV 199 (467)
T ss_pred HHHHHHCCCEEEEEEEeccCCC--CCHHHHHHHHHHHHHc----CC--CEEEECCccCCcCHHHHHHHHHHHHHhcCCce
Confidence 3333333223456677667773 5677777777777664 44 677777433 22 223344444433
Q ss_pred CceeEEeecCCHHHHHHHHHcCCcEEEechh
Q 017271 209 GIQTHLTFVYSFAQAAAAAQAGASVIQIFVG 239 (374)
Q Consensus 209 GI~vN~TlIFS~~QA~aaa~AGas~ISpFVG 239 (374)
+++++-|+=..+.-+++|++||+.++.-=++
T Consensus 200 ~~H~Hnt~GlA~AN~laAieaGad~vD~sv~ 230 (467)
T PRK14041 200 EVHSHCTTGLASLAYLAAVEAGADMFDTAIS 230 (467)
T ss_pred EEEecCCCCcHHHHHHHHHHhCCCEEEeecc
Confidence 7888888889999999999999876544443
No 113
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=55.38 E-value=30 Score=31.21 Aligned_cols=94 Identities=16% Similarity=0.065 Sum_probs=64.0
Q ss_pred HHHHHHHHHcCceeEEe--ecCCHHHHHHHHHcCCcEEEechhhhhhhhhcCCCCccchhhhccCCCcHHHHHHHHHHHH
Q 017271 199 IEASRLLESEGIQTHLT--FVYSFAQAAAAAQAGASVIQIFVGRLRDWARNHSGDPEIDDALKRGEDPALSLVSKAYNYI 276 (374)
Q Consensus 199 i~A~~~L~~eGI~vN~T--lIFS~~QA~aaa~AGas~ISpFVGRIdd~~~~~~~d~~~~~~~~~~~d~Gv~~v~~iy~~~ 276 (374)
-+.++.+.+.|+++-++ -..++.+...+.+.|+.++-.|.++-.... +...+...++++.+.
T Consensus 93 ~~~i~~~~~~g~~~~v~~~~~~t~~e~~~~~~~~~d~v~~~~~~~~~~~---------------~~~~~~~~i~~~~~~- 156 (202)
T cd04726 93 KKAVKAAKKYGKEVQVDLIGVEDPEKRAKLLKLGVDIVILHRGIDAQAA---------------GGWWPEDDLKKVKKL- 156 (202)
T ss_pred HHHHHHHHHcCCeEEEEEeCCCCHHHHHHHHHCCCCEEEEcCccccccc---------------CCCCCHHHHHHHHhh-
Confidence 34566667779999876 568899998888889999988766432211 011355566655543
Q ss_pred HHcCccHHHHHhccCChhcHHH--hhCCcEecccHHHH
Q 017271 277 HKYGHKSKLMAAAVRNKQDLFS--LLGVDYIIAPLKVL 312 (374)
Q Consensus 277 k~~g~~T~vLaAS~Rn~~~i~~--laG~D~lTipp~ll 312 (374)
++..+++-..-+.+++.+ .+|+|.+.+.-.+.
T Consensus 157 ----~~~~i~~~GGI~~~~i~~~~~~Gad~vvvGsai~ 190 (202)
T cd04726 157 ----LGVKVAVAGGITPDTLPEFKKAGADIVIVGRAIT 190 (202)
T ss_pred ----cCCCEEEECCcCHHHHHHHHhcCCCEEEEeehhc
Confidence 356677776777888877 47999987776654
No 114
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=55.36 E-value=40 Score=30.72 Aligned_cols=101 Identities=13% Similarity=0.142 Sum_probs=61.7
Q ss_pred ecCChhH---HHHHHHHHHcCceeEEee---cCCHHHHHHHHHcCCcEEEechhhhhhhhhcCCCCccchhhhccCCCcH
Q 017271 192 IPSTWQG---IEASRLLESEGIQTHLTF---VYSFAQAAAAAQAGASVIQIFVGRLRDWARNHSGDPEIDDALKRGEDPA 265 (374)
Q Consensus 192 IPaT~eG---i~A~~~L~~eGI~vN~Tl---IFS~~QA~aaa~AGas~ISpFVGRIdd~~~~~~~d~~~~~~~~~~~d~G 265 (374)
+++...+ -+.++...+.|+++-+-+ --..+++..+.+.|+.|+.++-|.-...+ ...+
T Consensus 82 vh~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~t~~~~~~~~~~~g~d~v~~~pg~~~~~~----------------~~~~ 145 (206)
T TIGR03128 82 VLGVADDATIKGAVKAAKKHGKEVQVDLINVKDKVKRAKELKELGADYIGVHTGLDEQAK----------------GQNP 145 (206)
T ss_pred EeccCCHHHHHHHHHHHHHcCCEEEEEecCCCChHHHHHHHHHcCCCEEEEcCCcCcccC----------------CCCC
Confidence 6666533 355666777899997643 22358899899999999988643221100 0124
Q ss_pred HHHHHHHHHHHHHcCccHHHHHhccCChhcHHH--hhCCcEecccHHHH
Q 017271 266 LSLVSKAYNYIHKYGHKSKLMAAAVRNKQDLFS--LLGVDYIIAPLKVL 312 (374)
Q Consensus 266 v~~v~~iy~~~k~~g~~T~vLaAS~Rn~~~i~~--laG~D~lTipp~ll 312 (374)
+..++++.+.+. ...+++.+.-+.+++-+ .+|+|.+.+.-.++
T Consensus 146 ~~~i~~l~~~~~----~~~i~v~GGI~~~n~~~~~~~Ga~~v~vGsai~ 190 (206)
T TIGR03128 146 FEDLQTILKLVK----EARVAVAGGINLDTIPDVIKLGPDIVIVGGAIT 190 (206)
T ss_pred HHHHHHHHHhcC----CCcEEEECCcCHHHHHHHHHcCCCEEEEeehhc
Confidence 555555554443 23455456667777765 48999988765554
No 115
>cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain. FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit.
Probab=54.92 E-value=46 Score=33.80 Aligned_cols=105 Identities=21% Similarity=0.211 Sum_probs=73.6
Q ss_pred CChhHHHHHHHHHHc-CceeEEeecCCHHHHHHHHHcCCcEEEe--chhhhhhhhhcCCCCccchhhhccCCCcHHHHHH
Q 017271 194 STWQGIEASRLLESE-GIQTHLTFVYSFAQAAAAAQAGASVIQI--FVGRLRDWARNHSGDPEIDDALKRGEDPALSLVS 270 (374)
Q Consensus 194 aT~eGi~A~~~L~~e-GI~vN~TlIFS~~QA~aaa~AGas~ISp--FVGRIdd~~~~~~~d~~~~~~~~~~~d~Gv~~v~ 270 (374)
.+|+=|+. |.+. ++++-+--+.+.+.|..|.++|+..|.. --||..|. .-+.+....
T Consensus 200 ~~~~~i~~---l~~~~~~PvivKgv~~~~dA~~a~~~G~d~I~vsnhgG~~~d~-----------------~~~~~~~L~ 259 (344)
T cd02922 200 LTWDDIKW---LRKHTKLPIVLKGVQTVEDAVLAAEYGVDGIVLSNHGGRQLDT-----------------APAPIEVLL 259 (344)
T ss_pred CCHHHHHH---HHHhcCCcEEEEcCCCHHHHHHHHHcCCCEEEEECCCcccCCC-----------------CCCHHHHHH
Confidence 45655444 4443 6777777888999999999999876544 33333221 124566777
Q ss_pred HHHHHHHHcCccHHHH-HhccCChhcHHH--hhCCcEecccHHHHHHHHhC
Q 017271 271 KAYNYIHKYGHKSKLM-AAAVRNKQDLFS--LLGVDYIIAPLKVLQSLKES 318 (374)
Q Consensus 271 ~iy~~~k~~g~~T~vL-aAS~Rn~~~i~~--laG~D~lTipp~ll~~L~~~ 318 (374)
++++.++..+.+..|+ .-.+|+-.++++ .+|+|.+-+.-.++..+...
T Consensus 260 ~i~~~~~~~~~~~~vi~~GGIr~G~Dv~kalaLGA~aV~iG~~~l~~l~~~ 310 (344)
T cd02922 260 EIRKHCPEVFDKIEVYVDGGVRRGTDVLKALCLGAKAVGLGRPFLYALSAY 310 (344)
T ss_pred HHHHHHHHhCCCceEEEeCCCCCHHHHHHHHHcCCCEEEECHHHHHHHhhc
Confidence 8887776655455555 467899999988 58999999998888887654
No 116
>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=54.62 E-value=10 Score=37.75 Aligned_cols=85 Identities=16% Similarity=0.116 Sum_probs=57.0
Q ss_pred HHHHHHHHHc--CceeEEeecCCHHHHHHHHHcCCcEEEechhhhhhhhhcCCCCccchhhhccCCCcHHHHHHHHHHHH
Q 017271 199 IEASRLLESE--GIQTHLTFVYSFAQAAAAAQAGASVIQIFVGRLRDWARNHSGDPEIDDALKRGEDPALSLVSKAYNYI 276 (374)
Q Consensus 199 i~A~~~L~~e--GI~vN~TlIFS~~QA~aaa~AGas~ISpFVGRIdd~~~~~~~d~~~~~~~~~~~d~Gv~~v~~iy~~~ 276 (374)
.+|++++.+. ..+ =.-.+=|++|+..|+++|+++|- +|+ --...++++..++
T Consensus 187 ~~ai~~~r~~~~~~k-IeVEv~tl~ea~eal~~gaDiI~-----LDn--------------------m~~e~vk~av~~~ 240 (289)
T PRK07896 187 VAALRAVRAAAPDLP-CEVEVDSLEQLDEVLAEGAELVL-----LDN--------------------FPVWQTQEAVQRR 240 (289)
T ss_pred HHHHHHHHHhCCCCC-EEEEcCCHHHHHHHHHcCCCEEE-----eCC--------------------CCHHHHHHHHHHH
Confidence 3555666543 223 23356799999999999998873 221 1256677888777
Q ss_pred HHcCccHHHHHhccCChhcHHH--hhCCcEecccH
Q 017271 277 HKYGHKSKLMAAAVRNKQDLFS--LLGVDYIIAPL 309 (374)
Q Consensus 277 k~~g~~T~vLaAS~Rn~~~i~~--laG~D~lTipp 309 (374)
+..+.+..+.++..-|.+++.+ .+|+|++.+..
T Consensus 241 ~~~~~~v~ieaSGGI~~~ni~~yA~tGvD~Is~ga 275 (289)
T PRK07896 241 DARAPTVLLESSGGLTLDTAAAYAETGVDYLAVGA 275 (289)
T ss_pred hccCCCEEEEEECCCCHHHHHHHHhcCCCEEEeCh
Confidence 7665555555555678899877 68999986653
No 117
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=54.40 E-value=28 Score=32.38 Aligned_cols=90 Identities=21% Similarity=0.206 Sum_probs=50.3
Q ss_pred CChhHHHHHHHHHHcCceeEEee--cC---------CHHHHHHHHHcCCcEEEechhhhhhhhhcCCCCccchhhhccCC
Q 017271 194 STWQGIEASRLLESEGIQTHLTF--VY---------SFAQAAAAAQAGASVIQIFVGRLRDWARNHSGDPEIDDALKRGE 262 (374)
Q Consensus 194 aT~eGi~A~~~L~~eGI~vN~Tl--IF---------S~~QA~aaa~AGas~ISpFVGRIdd~~~~~~~d~~~~~~~~~~~ 262 (374)
.+.+-++.++.+ .+|++.... -| +.+|...|.++|+.+|.+-..-..+
T Consensus 47 ~~~~~~~~i~~~--~~iPil~~~~~~~~~~~~~ig~~~~~~~~a~~aGad~I~~~~~~~~~------------------- 105 (219)
T cd04729 47 NGVEDIRAIRAR--VDLPIIGLIKRDYPDSEVYITPTIEEVDALAAAGADIIALDATDRPR------------------- 105 (219)
T ss_pred CCHHHHHHHHHh--CCCCEEEEEecCCCCCCceeCCCHHHHHHHHHcCCCEEEEeCCCCCC-------------------
Confidence 445666776664 355553211 11 3569999999999988885422210
Q ss_pred CcHHHHHHHHHHHHHHcCccHHHHHhccCChhcHHH--hhCCcEecc
Q 017271 263 DPALSLVSKAYNYIHKYGHKSKLMAAAVRNKQDLFS--LLGVDYIIA 307 (374)
Q Consensus 263 d~Gv~~v~~iy~~~k~~g~~T~vLaAS~Rn~~~i~~--laG~D~lTi 307 (374)
|.-....++.+..++++ +..+ .....+.+++.. .+|+|++.+
T Consensus 106 -p~~~~~~~~i~~~~~~g-~~~i-iv~v~t~~ea~~a~~~G~d~i~~ 149 (219)
T cd04729 106 -PDGETLAELIKRIHEEY-NCLL-MADISTLEEALNAAKLGFDIIGT 149 (219)
T ss_pred -CCCcCHHHHHHHHHHHh-CCeE-EEECCCHHHHHHHHHcCCCEEEc
Confidence 11012334455555555 3222 235567777655 589999854
No 118
>cd03320 OSBS o-Succinylbenzoate synthase (OSBS) catalyzes the conversion of 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate (SHCHC) to 4-(2'-carboxyphenyl)-4-oxobutyrate (o-succinylbenzoate or OSB), a reaction in the menaquinone biosynthetic pathway. Menaquinone is an essential cofactor for anaerobic growth in eubacteria and some archaea. OSBS belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=54.10 E-value=1.5e+02 Score=28.33 Aligned_cols=110 Identities=15% Similarity=0.137 Sum_probs=76.9
Q ss_pred HHHhcCCCCeEEEEecCCccCCHHHHHHHHHHHHHHhcCCCCCCCcEEEEecCChhHHHHHHHHHHcCceeEEee-cCCH
Q 017271 142 GDLAKMVPGRVSTEVDARLAYDTHGIIRKVHDLLKLYSEIDVPPERLLFKIPSTWQGIEASRLLESEGIQTHLTF-VYSF 220 (374)
Q Consensus 142 ~eil~~v~G~VS~EVdp~la~D~e~~I~eA~~L~~l~~~~gv~~~nVlIKIPaT~eGi~A~~~L~~eGI~vN~Tl-IFS~ 220 (374)
+.+.+.++..+.+=||++-+.|.+..++-++++ ++.++ .+|-=|...+.+...++|. -++++-+-- ++++
T Consensus 118 ~~vr~~~g~~~~l~vDaN~~w~~~~A~~~~~~l----~~~~i----~~iEqP~~~~d~~~~~~l~-~~~PIa~dEs~~~~ 188 (263)
T cd03320 118 RALREALPADAKLRLDANGGWSLEEALAFLEAL----AAGRI----EYIEQPLPPDDLAELRRLA-AGVPIALDESLRRL 188 (263)
T ss_pred HHHHHHcCCCCeEEEeCCCCCCHHHHHHHHHhh----cccCC----ceEECCCChHHHHHHHHhh-cCCCeeeCCccccc
Confidence 455566665788889998888876544444444 33222 3677788777888888887 677776654 4677
Q ss_pred HHHHHHHHcC-CcEEEechhhhhhhhhcCCCCccchhhhccCCCcHHHHHHHHHHHHHHcCcc
Q 017271 221 AQAAAAAQAG-ASVIQIFVGRLRDWARNHSGDPEIDDALKRGEDPALSLVSKAYNYIHKYGHK 282 (374)
Q Consensus 221 ~QA~aaa~AG-as~ISpFVGRIdd~~~~~~~d~~~~~~~~~~~d~Gv~~v~~iy~~~k~~g~~ 282 (374)
.+.....+.| +.++.+=++++ -|+.-++++.++.+.+|.+
T Consensus 189 ~~~~~~~~~~~~d~v~~k~~~~----------------------GGit~~~~i~~~a~~~gi~ 229 (263)
T cd03320 189 DDPLALAAAGALGALVLKPALL----------------------GGPRALLELAEEARARGIP 229 (263)
T ss_pred cCHHHHHhcCCCCEEEECchhc----------------------CCHHHHHHHHHHHHHcCCC
Confidence 7777777775 67777766654 2788899999988888755
No 119
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=53.95 E-value=1.2e+02 Score=29.55 Aligned_cols=132 Identities=14% Similarity=0.224 Sum_probs=76.9
Q ss_pred ccCCHHHHHHHHHHHHHHhcCCCCCCCcEEEEecCChhH-HHHHHHHHHcCc--eeEEeecCCHHHHHHHHHcCCcEEEe
Q 017271 160 LAYDTHGIIRKVHDLLKLYSEIDVPPERLLFKIPSTWQG-IEASRLLESEGI--QTHLTFVYSFAQAAAAAQAGASVIQI 236 (374)
Q Consensus 160 la~D~e~~I~eA~~L~~l~~~~gv~~~nVlIKIPaT~eG-i~A~~~L~~eGI--~vN~TlIFS~~QA~aaa~AGas~ISp 236 (374)
..+.+++.++=++.|.++ || +.|=+=-|..-++ ..+++.+.+.+. .+-+-+....+....|.++|+..|..
T Consensus 17 ~~~s~~~k~~i~~~L~~~----Gv--~~IEvG~P~~~~~~~~~~~~l~~~~~~~~v~~~~r~~~~di~~a~~~g~~~i~i 90 (262)
T cd07948 17 AFFDTEDKIEIAKALDAF----GV--DYIELTSPAASPQSRADCEAIAKLGLKAKILTHIRCHMDDARIAVETGVDGVDL 90 (262)
T ss_pred CCCCHHHHHHHHHHHHHc----CC--CEEEEECCCCCHHHHHHHHHHHhCCCCCcEEEEecCCHHHHHHHHHcCcCEEEE
Confidence 456777777776666665 45 4444444766544 456677765553 33223456777888889999999888
Q ss_pred chhhhhhhhhcCCCCccchhhhccCCCcHHHHHHHHHHHHHHcCccHHHH-HhccCCh-hcHHH------hhCCcEec
Q 017271 237 FVGRLRDWARNHSGDPEIDDALKRGEDPALSLVSKAYNYIHKYGHKSKLM-AAAVRNK-QDLFS------LLGVDYII 306 (374)
Q Consensus 237 FVGRIdd~~~~~~~d~~~~~~~~~~~d~Gv~~v~~iy~~~k~~g~~T~vL-aAS~Rn~-~~i~~------laG~D~lT 306 (374)
|++==+-....+.+ ...+..++.++++.++.+.+|++..+- .-++|.. +.+.+ .+|+|.+.
T Consensus 91 ~~~~S~~~~~~~~~---------~~~~e~~~~~~~~i~~a~~~G~~v~~~~eda~r~~~~~l~~~~~~~~~~g~~~i~ 159 (262)
T cd07948 91 VFGTSPFLREASHG---------KSITEIIESAVEVIEFVKSKGIEVRFSSEDSFRSDLVDLLRVYRAVDKLGVNRVG 159 (262)
T ss_pred EEecCHHHHHHHhC---------CCHHHHHHHHHHHHHHHHHCCCeEEEEEEeeCCCCHHHHHHHHHHHHHcCCCEEE
Confidence 87532221111111 011235777888888888888764432 2355543 33332 35777653
No 120
>PRK06294 coproporphyrinogen III oxidase; Provisional
Probab=53.95 E-value=60 Score=32.95 Aligned_cols=78 Identities=12% Similarity=0.227 Sum_probs=48.4
Q ss_pred CeEEEEecCCccCCHHHHHHHHHHHHHHhcCCCCCCCcEEEEecCCh--------------hHHHHHHHHHHcCce-eEE
Q 017271 150 GRVSTEVDARLAYDTHGIIRKVHDLLKLYSEIDVPPERLLFKIPSTW--------------QGIEASRLLESEGIQ-THL 214 (374)
Q Consensus 150 G~VS~EVdp~la~D~e~~I~eA~~L~~l~~~~gv~~~nVlIKIPaT~--------------eGi~A~~~L~~eGI~-vN~ 214 (374)
..|++|++|..- +. + .++.+++.|+ .||-|=|-+.. +-++|++.+.+.|+. +|+
T Consensus 90 ~eit~E~~P~~~-~~-~-------~l~~l~~~G~--nrislGvQS~~~~~L~~l~R~~~~~~~~~ai~~~~~~g~~~v~~ 158 (370)
T PRK06294 90 TEITLEANPENL-SE-S-------YIRALALTGI--NRISIGVQTFDDPLLKLLGRTHSSSKAIDAVQECSEHGFSNLSI 158 (370)
T ss_pred CeEEEEeCCCCC-CH-H-------HHHHHHHCCC--CEEEEccccCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCeEEE
Confidence 478889888642 21 1 2233344455 46666555543 457888999999994 999
Q ss_pred eecCC-HHHHHH--------HHHcCCcEEEech
Q 017271 215 TFVYS-FAQAAA--------AAQAGASVIQIFV 238 (374)
Q Consensus 215 TlIFS-~~QA~a--------aa~AGas~ISpFV 238 (374)
.+||. +.|-.. +.+.++.-||.|-
T Consensus 159 Dli~GlPgqt~~~~~~~l~~~~~l~~~~is~y~ 191 (370)
T PRK06294 159 DLIYGLPTQSLSDFIVDLHQAITLPITHISLYN 191 (370)
T ss_pred EeecCCCCCCHHHHHHHHHHHHccCCCeEEEee
Confidence 99998 334322 3345776666553
No 121
>PRK09249 coproporphyrinogen III oxidase; Provisional
Probab=53.80 E-value=1.2e+02 Score=31.69 Aligned_cols=78 Identities=14% Similarity=0.246 Sum_probs=50.9
Q ss_pred CeEEEEecCCccCCHHHHHHHHHHHHHHhcCCCCCCCcEEEEecCCh--------------hHHHHHHHHHHcCc-eeEE
Q 017271 150 GRVSTEVDARLAYDTHGIIRKVHDLLKLYSEIDVPPERLLFKIPSTW--------------QGIEASRLLESEGI-QTHL 214 (374)
Q Consensus 150 G~VS~EVdp~la~D~e~~I~eA~~L~~l~~~~gv~~~nVlIKIPaT~--------------eGi~A~~~L~~eGI-~vN~ 214 (374)
..+++|++|..- +++.++. .++.|+ .+|.|-|=+.. +-+++++.|.+.|+ ++|+
T Consensus 138 ~e~tie~np~~l--t~e~l~~-------l~~aG~--~risiGvqS~~~~~L~~l~r~~~~~~~~~ai~~l~~~G~~~v~~ 206 (453)
T PRK09249 138 AEISIEIDPREL--DLEMLDA-------LRELGF--NRLSLGVQDFDPEVQKAVNRIQPFEFTFALVEAARELGFTSINI 206 (453)
T ss_pred CEEEEEecCCcC--CHHHHHH-------HHHcCC--CEEEECCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHcCCCcEEE
Confidence 479999999743 2233332 233345 46666554433 45789999999999 8999
Q ss_pred eecCCH-HH-------HH-HHHHcCCcEEEech
Q 017271 215 TFVYSF-AQ-------AA-AAAQAGASVIQIFV 238 (374)
Q Consensus 215 TlIFS~-~Q-------A~-aaa~AGas~ISpFV 238 (374)
.++|.+ .| -+ .+.+.|+..++.|.
T Consensus 207 dli~GlPgqt~e~~~~~l~~~~~l~~~~i~~y~ 239 (453)
T PRK09249 207 DLIYGLPKQTPESFARTLEKVLELRPDRLAVFN 239 (453)
T ss_pred EEEccCCCCCHHHHHHHHHHHHhcCCCEEEEcc
Confidence 999972 22 22 24466888888874
No 122
>cd03318 MLE Muconate Lactonizing Enzyme (MLE), an homooctameric enzyme, catalyses the conversion of cis,cis-muconate (CCM) to muconolactone (ML) in the catechol branch of the beta-ketoadipate pathway. This pathway is used in soil microbes to breakdown lignin-derived aromatics, catechol and protocatechuate, to citric acid cycle intermediates. Some bacterial species are also capable of dehalogenating chloroaromatic compounds by the action of chloromuconate lactonizing enzymes (Cl-MLEs). MLEs are members of the enolase superfamily characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion.
Probab=53.76 E-value=2e+02 Score=28.82 Aligned_cols=112 Identities=23% Similarity=0.226 Sum_probs=71.5
Q ss_pred HHHhcCCCCeEEEEecCCccCCHHHHHHHHHHHHHHhcCCCCCCCcEEEEecCChhHHHHHHHHHHc-CceeEEee-cCC
Q 017271 142 GDLAKMVPGRVSTEVDARLAYDTHGIIRKVHDLLKLYSEIDVPPERLLFKIPSTWQGIEASRLLESE-GIQTHLTF-VYS 219 (374)
Q Consensus 142 ~eil~~v~G~VS~EVdp~la~D~e~~I~eA~~L~~l~~~~gv~~~nVlIKIPaT~eGi~A~~~L~~e-GI~vN~Tl-IFS 219 (374)
+.+.+.++..+.+-+|++-+.+.+..++-++++.. +|+ .+|-=|.-..-+...++|.+. +|++-+-- +++
T Consensus 179 ~avr~~~g~~~~l~iDaN~~~~~~~A~~~~~~l~~----~~~----~~iEeP~~~~~~~~~~~l~~~~~~pia~dE~~~~ 250 (365)
T cd03318 179 EAIAKALGDRASVRVDVNQAWDESTAIRALPRLEA----AGV----ELIEQPVPRENLDGLARLRSRNRVPIMADESVSG 250 (365)
T ss_pred HHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHHHh----cCc----ceeeCCCCcccHHHHHHHHhhcCCCEEcCcccCC
Confidence 34445554467788888877887655555554443 222 356655544445555556554 67765543 678
Q ss_pred HHHHHHHHHcC-CcEEEechhhhhhhhhcCCCCccchhhhccCCCcHHHHHHHHHHHHHHcCccH
Q 017271 220 FAQAAAAAQAG-ASVIQIFVGRLRDWARNHSGDPEIDDALKRGEDPALSLVSKAYNYIHKYGHKS 283 (374)
Q Consensus 220 ~~QA~aaa~AG-as~ISpFVGRIdd~~~~~~~d~~~~~~~~~~~d~Gv~~v~~iy~~~k~~g~~T 283 (374)
+.+.....++| +.++.|=+.++ -|+..++++..+.+.+|.+.
T Consensus 251 ~~~~~~~i~~~~~d~~~~d~~~~----------------------GGit~~~~~~~~a~~~gi~~ 293 (365)
T cd03318 251 PADAFELARRGAADVFSLKIAKS----------------------GGLRRAQKVAAIAEAAGIAL 293 (365)
T ss_pred HHHHHHHHHhCCCCeEEEeeccc----------------------CCHHHHHHHHHHHHHcCCce
Confidence 99998888876 45664443332 27889999999989887663
No 123
>PRK07315 fructose-bisphosphate aldolase; Provisional
Probab=53.73 E-value=75 Score=31.57 Aligned_cols=136 Identities=12% Similarity=0.098 Sum_probs=90.2
Q ss_pred CCeEEEEecCCccCCHHHHHHHHHHHHHHhcCCCCCCCcEEEEecCChhHHHHHHHHH-HcCceeEEeecCCHHHHHHHH
Q 017271 149 PGRVSTEVDARLAYDTHGIIRKVHDLLKLYSEIDVPPERLLFKIPSTWQGIEASRLLE-SEGIQTHLTFVYSFAQAAAAA 227 (374)
Q Consensus 149 ~G~VS~EVdp~la~D~e~~I~eA~~L~~l~~~~gv~~~nVlIKIPaT~eGi~A~~~L~-~eGI~vN~TlIFS~~QA~aaa 227 (374)
.|+=|+++|.. ..+.++.++.++++.+++...|++ |-..|- +.+- ..++ +..+..-+++||..+.
T Consensus 98 ~GftSVm~d~S-~l~~eEni~~t~~v~~~a~~~gv~---vE~ElG---------~i~g~ed~~-~g~s~~t~peea~~f~ 163 (293)
T PRK07315 98 VGYTSIMFDGS-HLPVEENLKLAKEVVEKAHAKGIS---VEAEVG---------TIGGEEDGI-IGKGELAPIEDAKAMV 163 (293)
T ss_pred cCCCEEEEcCC-CCCHHHHHHHHHHHHHHHHHcCCE---EEEecC---------cccCcCccc-cCccCCCCHHHHHHHH
Confidence 48999999985 478899999999999999877663 222221 1111 1121 1112246999999999
Q ss_pred HcCCcEEEechhhhhhhhhcCCCCccchhhhccCCCcHHHHHHHHHHHHHHcCccHHHHHhccCChhcHHH--hhCCcEe
Q 017271 228 QAGASVIQIFVGRLRDWARNHSGDPEIDDALKRGEDPALSLVSKAYNYIHKYGHKSKLMAAAVRNKQDLFS--LLGVDYI 305 (374)
Q Consensus 228 ~AGas~ISpFVGRIdd~~~~~~~d~~~~~~~~~~~d~Gv~~v~~iy~~~k~~g~~T~vLaAS~Rn~~~i~~--laG~D~l 305 (374)
+.|++|+++=+|-+.-.|... .+ .-++...++|.+... +.+..+.+.|.-..+++.. ..|++-+
T Consensus 164 ~tgvD~LAv~iG~vHG~y~t~--~k----------~l~~e~L~~i~~~~~--~iPlVlhGGSGi~~e~~~~~i~~Gi~Ki 229 (293)
T PRK07315 164 ETGIDFLAAGIGNIHGPYPEN--WE----------GLDLDHLEKLTEAVP--GFPIVLHGGSGIPDDQIQEAIKLGVAKV 229 (293)
T ss_pred HcCCCEEeeccccccccCCCC--CC----------cCCHHHHHHHHHhcc--CCCEEEECCCCCCHHHHHHHHHcCCCEE
Confidence 999999999999985444210 00 135666666655431 3566666888888888876 5888877
Q ss_pred cccHHHH
Q 017271 306 IAPLKVL 312 (374)
Q Consensus 306 Tipp~ll 312 (374)
-+--.+.
T Consensus 230 Nv~T~i~ 236 (293)
T PRK07315 230 NVNTECQ 236 (293)
T ss_pred EEccHHH
Confidence 5555554
No 124
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.
Probab=53.58 E-value=68 Score=31.24 Aligned_cols=119 Identities=20% Similarity=0.190 Sum_probs=72.4
Q ss_pred ecCCccCCHHHHHHHHHHHHHHhcCCCCCCCcEEEEecCC---------hhHHHHHHHHHHc-CceeEEeecCCHHHHHH
Q 017271 156 VDARLAYDTHGIIRKVHDLLKLYSEIDVPPERLLFKIPST---------WQGIEASRLLESE-GIQTHLTFVYSFAQAAA 225 (374)
Q Consensus 156 Vdp~la~D~e~~I~eA~~L~~l~~~~gv~~~nVlIKIPaT---------~eGi~A~~~L~~e-GI~vN~TlIFS~~QA~a 225 (374)
.-|...++.+.+++.|+++.+...++.. ..+-| |-| .+|++.+++...+ ||.+ +|-+|+..|+..
T Consensus 30 AGpc~ie~~~~~~~~A~~lk~~~~k~~r---~~~~K-pRtsp~s~~g~g~~gl~~l~~~~~~~Gl~~-~t~~~d~~~~~~ 104 (260)
T TIGR01361 30 AGPCSVESEEQIMETARFVKEAGAKILR---GGAFK-PRTSPYSFQGLGEEGLKLLRRAADEHGLPV-VTEVMDPRDVEI 104 (260)
T ss_pred EeCCccCCHHHHHHHHHHHHHHHHHhcc---Cceec-CCCCCccccccHHHHHHHHHHHHHHhCCCE-EEeeCChhhHHH
Confidence 3466778899999999999988765433 23344 333 3678888777655 9999 788999999999
Q ss_pred HHHcCCcEEEechhhhhhh--hhcCCCCccchhhhccCCCcHHHHHHHHHHHHHHcCc
Q 017271 226 AAQAGASVIQIFVGRLRDW--ARNHSGDPEIDDALKRGEDPALSLVSKAYNYIHKYGH 281 (374)
Q Consensus 226 aa~AGas~ISpFVGRIdd~--~~~~~~d~~~~~~~~~~~d~Gv~~v~~iy~~~k~~g~ 281 (374)
+++. +.++-+=-+-+.++ .+... ..+..-.++.|...-+.-+..+.++++..|.
T Consensus 105 l~~~-~d~lkI~s~~~~n~~LL~~~a-~~gkPVilk~G~~~t~~e~~~Ave~i~~~Gn 160 (260)
T TIGR01361 105 VAEY-ADILQIGARNMQNFELLKEVG-KQGKPVLLKRGMGNTIEEWLYAAEYILSSGN 160 (260)
T ss_pred HHhh-CCEEEECcccccCHHHHHHHh-cCCCcEEEeCCCCCCHHHHHHHHHHHHHcCC
Confidence 9876 54443322222221 11100 0000001223322247778888888887764
No 125
>PRK05660 HemN family oxidoreductase; Provisional
Probab=53.46 E-value=1.3e+02 Score=30.59 Aligned_cols=80 Identities=14% Similarity=0.204 Sum_probs=51.3
Q ss_pred eEEEEecCCccCCHHHHHHHHHHHHHHhcCCCCCCCcEEEEecCCh--------------hHHHHHHHHHHcCce-eEEe
Q 017271 151 RVSTEVDARLAYDTHGIIRKVHDLLKLYSEIDVPPERLLFKIPSTW--------------QGIEASRLLESEGIQ-THLT 215 (374)
Q Consensus 151 ~VS~EVdp~la~D~e~~I~eA~~L~~l~~~~gv~~~nVlIKIPaT~--------------eGi~A~~~L~~eGI~-vN~T 215 (374)
.|++|++|..-.. ++. +..++.|+ .||-|-|-+-. +-++|++.+.+.|+. +|+.
T Consensus 95 eit~e~np~~l~~-----e~l----~~Lk~~Gv--~risiGvqS~~~~~L~~l~r~~~~~~~~~ai~~~~~~G~~~v~~d 163 (378)
T PRK05660 95 EITMEANPGTVEA-----DRF----VGYQRAGV--NRISIGVQSFSEEKLKRLGRIHGPDEAKRAAKLAQGLGLRSFNLD 163 (378)
T ss_pred EEEEEeCcCcCCH-----HHH----HHHHHcCC--CEEEeccCcCCHHHHHHhCCCCCHHHHHHHHHHHHHcCCCeEEEE
Confidence 6888998864221 222 22334455 56777666543 457889999999995 7999
Q ss_pred ecCCHH-H--------HHHHHHcCCcEEEechhhh
Q 017271 216 FVYSFA-Q--------AAAAAQAGASVIQIFVGRL 241 (374)
Q Consensus 216 lIFS~~-Q--------A~aaa~AGas~ISpFVGRI 241 (374)
++|.+. | ...+.+.|+.-||.|.=.+
T Consensus 164 li~Glpgqt~~~~~~~l~~~~~l~p~~is~y~l~~ 198 (378)
T PRK05660 164 LMHGLPDQSLEEALDDLRQAIALNPPHLSWYQLTI 198 (378)
T ss_pred eecCCCCCCHHHHHHHHHHHHhcCCCeEEeeccEe
Confidence 999832 2 2224466888887765444
No 126
>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=52.32 E-value=20 Score=35.54 Aligned_cols=98 Identities=21% Similarity=0.174 Sum_probs=60.5
Q ss_pred CcEEEEecCCh-hHH-HHHHHHHHcC--ceeEEeecCCHHHHHHHHHcCCcEEEechhhhhhhhhcCCCCccchhhhccC
Q 017271 186 ERLLFKIPSTW-QGI-EASRLLESEG--IQTHLTFVYSFAQAAAAAQAGASVIQIFVGRLRDWARNHSGDPEIDDALKRG 261 (374)
Q Consensus 186 ~nVlIKIPaT~-eGi-~A~~~L~~eG--I~vN~TlIFS~~QA~aaa~AGas~ISpFVGRIdd~~~~~~~d~~~~~~~~~~ 261 (374)
+-||||=---. .|+ +|++.+.+.+ .++ .--+=+++|+..|+++|+.+|- +|.
T Consensus 155 d~vLikdnHi~~~~i~~av~~~r~~~~~~kI-eVEv~~leea~~a~~agaDiI~-----LDn------------------ 210 (278)
T PRK08385 155 DAILIKDNHLALVPLEEAIRRAKEFSVYKVV-EVEVESLEDALKAAKAGADIIM-----LDN------------------ 210 (278)
T ss_pred ccEEEccCHHHHHHHHHHHHHHHHhCCCCcE-EEEeCCHHHHHHHHHcCcCEEE-----ECC------------------
Confidence 34777721111 132 3445554443 222 2234599999999999998652 111
Q ss_pred CCcHHHHHHHHHHHHHHcC--ccHHHHHhccCChhcHHH--hhCCcEecccH
Q 017271 262 EDPALSLVSKAYNYIHKYG--HKSKLMAAAVRNKQDLFS--LLGVDYIIAPL 309 (374)
Q Consensus 262 ~d~Gv~~v~~iy~~~k~~g--~~T~vLaAS~Rn~~~i~~--laG~D~lTipp 309 (374)
.....++++..+++..+ .+.++.++..-|.+++.+ .+|+|++.+.-
T Consensus 211 --~~~e~l~~~v~~l~~~~~~~~~~leaSGGI~~~ni~~yA~tGvD~Is~ga 260 (278)
T PRK08385 211 --MTPEEIREVIEALKREGLRERVKIEVSGGITPENIEEYAKLDVDVISLGA 260 (278)
T ss_pred --CCHHHHHHHHHHHHhcCcCCCEEEEEECCCCHHHHHHHHHcCCCEEEeCh
Confidence 24567888888887755 345555555778888876 68999996653
No 127
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=52.11 E-value=26 Score=32.93 Aligned_cols=94 Identities=16% Similarity=0.097 Sum_probs=64.6
Q ss_pred ecCChhHHHHHHHHHHcCceeEEeecCCHHHHHHHHHcCCcEEEechhhhhhhhhcCCCCccchhhhccCCCcHHHHHHH
Q 017271 192 IPSTWQGIEASRLLESEGIQTHLTFVYSFAQAAAAAQAGASVIQIFVGRLRDWARNHSGDPEIDDALKRGEDPALSLVSK 271 (374)
Q Consensus 192 IPaT~eGi~A~~~L~~eGI~vN~TlIFS~~QA~aaa~AGas~ISpFVGRIdd~~~~~~~d~~~~~~~~~~~d~Gv~~v~~ 271 (374)
.|.+... .++.....|+.+-.. ++|++|+..|.++|++|+-.|=.. ..|...++.
T Consensus 89 sp~~~~~--v~~~~~~~~~~~~~G-~~t~~E~~~A~~~Gad~vk~Fpa~----------------------~~G~~~l~~ 143 (206)
T PRK09140 89 TPNTDPE--VIRRAVALGMVVMPG-VATPTEAFAALRAGAQALKLFPAS----------------------QLGPAGIKA 143 (206)
T ss_pred CCCCCHH--HHHHHHHCCCcEEcc-cCCHHHHHHHHHcCCCEEEECCCC----------------------CCCHHHHHH
Confidence 3665554 344455678877666 999999999999999999976310 125555554
Q ss_pred HHHHHHHcCccHHHHHhccCChhcHHH--hhCCcEecccHHHHH
Q 017271 272 AYNYIHKYGHKSKLMAAAVRNKQDLFS--LLGVDYIIAPLKVLQ 313 (374)
Q Consensus 272 iy~~~k~~g~~T~vLaAS~Rn~~~i~~--laG~D~lTipp~ll~ 313 (374)
+...+. .+..+++...-+.+++-+ .+|+|.+-+.-.+++
T Consensus 144 l~~~~~---~~ipvvaiGGI~~~n~~~~~~aGa~~vav~s~l~~ 184 (206)
T PRK09140 144 LRAVLP---PDVPVFAVGGVTPENLAPYLAAGAAGFGLGSALYR 184 (206)
T ss_pred HHhhcC---CCCeEEEECCCCHHHHHHHHHCCCeEEEEehHhcc
Confidence 433321 246678888888888887 589999977666654
No 128
>PRK08072 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=51.71 E-value=30 Score=34.15 Aligned_cols=95 Identities=19% Similarity=0.169 Sum_probs=58.9
Q ss_pred CcEEEEec------CChhHHHHHHHHHHcCceeEEeecCCHHHHHHHHHcCCcEEEechhhhhhhhhcCCCCccchhhhc
Q 017271 186 ERLLFKIP------STWQGIEASRLLESEGIQTHLTFVYSFAQAAAAAQAGASVIQIFVGRLRDWARNHSGDPEIDDALK 259 (374)
Q Consensus 186 ~nVlIKIP------aT~eGi~A~~~L~~eGI~vN~TlIFS~~QA~aaa~AGas~ISpFVGRIdd~~~~~~~d~~~~~~~~ 259 (374)
+-||||=- .-.+-++.+|+....+..+=++ +.+.+|+..|+++|++||.. | +
T Consensus 159 d~vlikdnHi~~~g~~~~~v~~aR~~~~~~~~Igvs-v~tleea~~A~~~gaDyI~l------D---~------------ 216 (277)
T PRK08072 159 DGVMIKDNHIAFCGSITKAVTSVREKLGHMVKIEVE-TETEEQVREAVAAGADIIMF------D---N------------ 216 (277)
T ss_pred ceEEEchhHHHhhCCHHHHHHHHHHhCCCCCEEEEE-eCCHHHHHHHHHcCCCEEEE------C---C------------
Confidence 56888822 2224455566654323333333 25999999999999999966 1 0
Q ss_pred cCCCcHHHHHHHHHHHHHHcCccHHHHHhccCChhcHHH--hhCCcEecccH
Q 017271 260 RGEDPALSLVSKAYNYIHKYGHKSKLMAAAVRNKQDLFS--LLGVDYIIAPL 309 (374)
Q Consensus 260 ~~~d~Gv~~v~~iy~~~k~~g~~T~vLaAS~Rn~~~i~~--laG~D~lTipp 309 (374)
-|+..++++.+..+ .+..+.+...-+.+++.+ .+|+|.+.+.-
T Consensus 217 ----~~~e~l~~~~~~~~---~~i~i~AiGGIt~~ni~~~a~~Gvd~IAvg~ 261 (277)
T PRK08072 217 ----RTPDEIREFVKLVP---SAIVTEASGGITLENLPAYGGTGVDYISLGF 261 (277)
T ss_pred ----CCHHHHHHHHHhcC---CCceEEEECCCCHHHHHHHHHcCCCEEEECh
Confidence 24555666655432 233333555678888876 68999987664
No 129
>PRK09389 (R)-citramalate synthase; Provisional
Probab=51.64 E-value=1.3e+02 Score=32.15 Aligned_cols=134 Identities=16% Similarity=0.116 Sum_probs=79.7
Q ss_pred CccCCHHHHHHHHHHHHHHhcCCCCCCCcEEEEecCChh-HHHHHHHHHHcCceeEEeecCC--HHHHHHHHHcCCcEEE
Q 017271 159 RLAYDTHGIIRKVHDLLKLYSEIDVPPERLLFKIPSTWQ-GIEASRLLESEGIQTHLTFVYS--FAQAAAAAQAGASVIQ 235 (374)
Q Consensus 159 ~la~D~e~~I~eA~~L~~l~~~~gv~~~nVlIKIPaT~e-Gi~A~~~L~~eGI~vN~TlIFS--~~QA~aaa~AGas~IS 235 (374)
...++.++-++-|+.|.++ || +.|=+=.|+..+ -.++++.+.+.+.++.++..-. ..-..++.++|+..|.
T Consensus 18 g~~~s~e~K~~ia~~L~~~----Gv--~~IE~G~p~~~~~d~e~v~~i~~~~~~~~i~a~~r~~~~di~~a~~~g~~~v~ 91 (488)
T PRK09389 18 GVSLTPEEKLEIARKLDEL----GV--DVIEAGSAITSEGEREAIKAVTDEGLNAEICSFARAVKVDIDAALECDVDSVH 91 (488)
T ss_pred CCCcCHHHHHHHHHHHHHc----CC--CEEEEeCCcCCHHHHHHHHHHHhcCCCcEEEeecccCHHHHHHHHhCCcCEEE
Confidence 3567787777777777665 45 566666776554 4778888877766554443322 3344567788999999
Q ss_pred echhhhhhhhhcCCCCccchhhhccCCCcHHHHHHHHHHHHHHcCccHHH--HHhccCChhcHHH------hhCCcEecc
Q 017271 236 IFVGRLRDWARNHSGDPEIDDALKRGEDPALSLVSKAYNYIHKYGHKSKL--MAAAVRNKQDLFS------LLGVDYIIA 307 (374)
Q Consensus 236 pFVGRIdd~~~~~~~d~~~~~~~~~~~d~Gv~~v~~iy~~~k~~g~~T~v--LaAS~Rn~~~i~~------laG~D~lTi 307 (374)
.|++-=+-+.+.+.. ...+..++.+.++.+|.+++|.+.++ .-++-.+++.+.+ .+|+|.+.+
T Consensus 92 i~~~~Sd~h~~~~l~---------~s~~e~l~~~~~~v~~ak~~g~~v~~~~ed~~r~~~~~l~~~~~~~~~~Ga~~i~l 162 (488)
T PRK09389 92 LVVPTSDLHIEYKLK---------KTREEVLETAVEAVEYAKDHGLIVELSGEDASRADLDFLKELYKAGIEAGADRICF 162 (488)
T ss_pred EEEccCHHHHHHHhC---------CCHHHHHHHHHHHHHHHHHCCCEEEEEEeeCCCCCHHHHHHHHHHHHhCCCCEEEE
Confidence 998654443322221 11124677888888888888764332 1222223333332 468777643
No 130
>PF03437 BtpA: BtpA family; InterPro: IPR005137 Photosystem I (PSI) is a large protein complex embedded within the photosynthetic thylakoid membrane. It consists of 11 subunits, ~100 chlorophyll a molecules, 2 phylloquinones, and 3 Fe4S4-clusters. The three dimensional structure of the PSI complex has been resolved at 2.5 A [], which allows the precise localisation of each cofactor. PSI together with photosystem II (PSII) catalyses the light-induced steps in oxygenic photosynthesis - a process found in cyanobacteria, eukaryotic algae (e.g. red algae, green algae) and higher plants. To date, three thylakoid proteins involved in the stable accumulation of PSI have been identified: BtpA [], Ycf3 [, ], and Ycf4 (IPR003359 from INTERPRO) []. Because translation of the psaA and psaB mRNAs encoding the two reaction centre polypeptides, of PSI and PSII respectively, is not affected in mutant strains lacking functional ycf3 and ycf4, the products of these two genes appear to act at a post-translational step of PSI biosynthesis. These gene products are therefore involved either in the stabilisation or in the assembly of the PSI complex. However, their exact roles remain unknown. The BtpA protein appears to act at the level of PSI stabilisation []. It is an extrinsic membrane protein located on the cytoplasmic side of the thylakoid membrane [, ]. Homologs of BtpA are found in the crenarchaeota and euryarchaeota, where their function remains unknown. The Ycf4 protein is firmly associated with the thylakoid membrane, presumably through a transmembrane domain []. Ycf4 co-fractionates with a protein complex larger than PSI upon sucrose density gradient centrifugation of solubilised thylakoids []. The Ycf3 protein is loosely associated with the thylakoid membrane and can be released from the membrane with sodium carbonate. This suggests that Ycf3 is not part of a stable complex and that it probably interacts transiently with its partners []. Ycf3 contains a number of tetratrico peptide repeats (TPR, IPR001440 from INTERPRO); TPR is a structural motif present in a wide range of proteins, which mediates protein-protein interactions.
Probab=51.38 E-value=56 Score=31.97 Aligned_cols=86 Identities=20% Similarity=0.150 Sum_probs=61.4
Q ss_pred CeEEEEe---cCCccCCHHHHHHHHHHHHHHhcCCCCCC---CcEE---EEecCChhHHHHHHHHH----Hc-CceeEEe
Q 017271 150 GRVSTEV---DARLAYDTHGIIRKVHDLLKLYSEIDVPP---ERLL---FKIPSTWQGIEASRLLE----SE-GIQTHLT 215 (374)
Q Consensus 150 G~VS~EV---dp~la~D~e~~I~eA~~L~~l~~~~gv~~---~nVl---IKIPaT~eGi~A~~~L~----~e-GI~vN~T 215 (374)
|.|++.= +|++..|.+++++.|++=.+.+++.|+|. +|.. .+-+..++-+-+|..+. ++ ++++=+-
T Consensus 7 GmvHL~pLPGsp~~~~~~~~iie~A~~ea~~l~~~GvDgiiveN~~D~Py~~~~~~etvaaM~~i~~~v~~~~~~p~GVn 86 (254)
T PF03437_consen 7 GMVHLPPLPGSPRYDGSMEEIIERAVREAEALEEGGVDGIIVENMGDVPYPKRVGPETVAAMARIAREVRREVSVPVGVN 86 (254)
T ss_pred EEEcCCCCCcCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEecCCCCCccCCCCHHHHHHHHHHHHHHHHhCCCCEEee
Confidence 5555553 78888899999999999999999999953 2311 23345667776664443 44 7888888
Q ss_pred ecC-CHHHHHHHHHc-CCcEEE
Q 017271 216 FVY-SFAQAAAAAQA-GASVIQ 235 (374)
Q Consensus 216 lIF-S~~QA~aaa~A-Gas~IS 235 (374)
++. ....+++.|.| |+.+|-
T Consensus 87 vL~nd~~aalaiA~A~ga~FIR 108 (254)
T PF03437_consen 87 VLRNDPKAALAIAAATGADFIR 108 (254)
T ss_pred eecCCCHHHHHHHHHhCCCEEE
Confidence 888 77778887765 888774
No 131
>PLN02489 homocysteine S-methyltransferase
Probab=51.08 E-value=2.4e+02 Score=28.45 Aligned_cols=83 Identities=18% Similarity=0.244 Sum_probs=49.3
Q ss_pred hhhhhHHHHHHHHhcC-------------------CCCeEEEEecCCcc---------------CCHHHHHHHHHHHHHH
Q 017271 132 FFNKALVNVGGDLAKM-------------------VPGRVSTEVDARLA---------------YDTHGIIRKVHDLLKL 177 (374)
Q Consensus 132 ~~~~~~v~~g~eil~~-------------------v~G~VS~EVdp~la---------------~D~e~~I~eA~~L~~l 177 (374)
.+.+..++++++..+. -+.+|.--|-|.-+ -+.+++.+.-++.++.
T Consensus 96 ~l~~~av~lA~~a~~~~~~~~~~~~~~~~~~~~~~~~~~VaGsiGP~g~~l~~g~ey~g~y~~~~~~~e~~~~~~~qi~~ 175 (335)
T PLN02489 96 TLLRKSVEIACEARDIFWDKCQKGSTSRPGRELSYRPILVAASIGSYGAYLADGSEYSGDYGPSVTLEKLKDFHRRRLQV 175 (335)
T ss_pred HHHHHHHHHHHHHHHHHhhhcccccccccccccCCCCcEEEEEcCCccccccCCcccCCCCccCCCHHHHHHHHHHHHHH
Confidence 3556667777666531 23467777766432 2335555554555555
Q ss_pred hcCCCCCCCcEEE-EecCChhHHHHHHHHHHcC--ceeEEee
Q 017271 178 YSEIDVPPERLLF-KIPSTWQGIEASRLLESEG--IQTHLTF 216 (374)
Q Consensus 178 ~~~~gv~~~nVlI-KIPaT~eGi~A~~~L~~eG--I~vN~Tl 216 (374)
+.+.|+ +-+++ -+|...|...+++.++..+ +++-+++
T Consensus 176 l~~~gv--D~i~~ET~~~l~E~~a~~~~~~~~~~~~p~~iS~ 215 (335)
T PLN02489 176 LAEAGP--DLIAFETIPNKLEAQAYVELLEEENIKIPAWISF 215 (335)
T ss_pred HHhCCC--CEEEEeccCChHHHHHHHHHHHHcCCCCeEEEEE
Confidence 555666 66777 4888888877777776653 5554444
No 132
>TIGR02708 L_lactate_ox L-lactate oxidase. Members of this protein oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide. The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence.
Probab=51.00 E-value=45 Score=34.36 Aligned_cols=104 Identities=20% Similarity=0.172 Sum_probs=70.0
Q ss_pred CChhHHHHHHHHHHcCceeEEeecCCHHHHHHHHHcCCc--EEEechhhhhhhhhcCCCCccchhhhccCCCcHHHHHHH
Q 017271 194 STWQGIEASRLLESEGIQTHLTFVYSFAQAAAAAQAGAS--VIQIFVGRLRDWARNHSGDPEIDDALKRGEDPALSLVSK 271 (374)
Q Consensus 194 aT~eGi~A~~~L~~eGI~vN~TlIFS~~QA~aaa~AGas--~ISpFVGRIdd~~~~~~~d~~~~~~~~~~~d~Gv~~v~~ 271 (374)
.||+=|+.++.. -++++-+--|.+.+-|..|.++|++ +||---||-.+- ..+.+....+
T Consensus 215 ~~w~~i~~l~~~--~~~PvivKGv~~~eda~~a~~~Gvd~I~VS~HGGrq~~~-----------------~~a~~~~L~e 275 (367)
T TIGR02708 215 LSPRDIEEIAGY--SGLPVYVKGPQCPEDADRALKAGASGIWVTNHGGRQLDG-----------------GPAAFDSLQE 275 (367)
T ss_pred CCHHHHHHHHHh--cCCCEEEeCCCCHHHHHHHHHcCcCEEEECCcCccCCCC-----------------CCcHHHHHHH
Confidence 577655544432 2677777788999999999999998 447766664331 0123444454
Q ss_pred HHHHHHHcCccHHHH-HhccCChhcHHH--hhCCcEecccHHHHHHHHhCC
Q 017271 272 AYNYIHKYGHKSKLM-AAAVRNKQDLFS--LLGVDYIIAPLKVLQSLKESA 319 (374)
Q Consensus 272 iy~~~k~~g~~T~vL-aAS~Rn~~~i~~--laG~D~lTipp~ll~~L~~~~ 319 (374)
+.+. .+.+..|+ --.+|+-.+++. .+|||.+.+.-.+|..|...+
T Consensus 276 i~~a---v~~~i~vi~dGGIr~g~Dv~KaLalGAd~V~igR~~l~~la~~G 323 (367)
T TIGR02708 276 VAEA---VDKRVPIVFDSGVRRGQHVFKALASGADLVALGRPVIYGLALGG 323 (367)
T ss_pred HHHH---hCCCCcEEeeCCcCCHHHHHHHHHcCCCEEEEcHHHHHHHHhcC
Confidence 4433 23344455 466889999986 489999999999999887654
No 133
>PRK05198 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=50.72 E-value=1.8e+02 Score=28.84 Aligned_cols=123 Identities=19% Similarity=0.192 Sum_probs=75.3
Q ss_pred EEEEecCCccCCHHHHHHHHHHHHHHhcCCCCCCCcEEEE-----ecCC----------hhHHHHHHHHHHc-CceeEEe
Q 017271 152 VSTEVDARLAYDTHGIIRKVHDLLKLYSEIDVPPERLLFK-----IPST----------WQGIEASRLLESE-GIQTHLT 215 (374)
Q Consensus 152 VS~EVdp~la~D~e~~I~eA~~L~~l~~~~gv~~~nVlIK-----IPaT----------~eGi~A~~~L~~e-GI~vN~T 215 (374)
+.+=--|.-..+.|.+++-|+.+.+....+++ ..+.| =|=| ++|++-.++..++ |+++ +|
T Consensus 11 ~~~iAGPC~vEs~e~~~~~A~~lk~~~~~~~~---~~~fK~sf~KapRTSp~sFqG~G~eeGL~~L~~vk~~~Glpv-vT 86 (264)
T PRK05198 11 FFLIAGPCVIESRDLALRIAEHLKEITDKLGI---PYVFKASFDKANRSSIHSFRGPGLEEGLKILQEVKETFGVPV-LT 86 (264)
T ss_pred eEEEecCCcccCHHHHHHHHHHHHHHHHhcCC---CeEEeccccCCCCCCCCCCCCCChHHHHHHHHHHHHHHCCce-EE
Confidence 33444454445578888999999998766655 35556 2333 4788888888887 9999 99
Q ss_pred ecCCHHHHHHHHHcCCcEEEe--chhhhhhhhhcCCCCccchhhhccCCCcHHHHHHHHHHHHHHcC
Q 017271 216 FVYSFAQAAAAAQAGASVIQI--FVGRLRDWARNHSGDPEIDDALKRGEDPALSLVSKAYNYIHKYG 280 (374)
Q Consensus 216 lIFS~~QA~aaa~AGas~ISp--FVGRIdd~~~~~~~d~~~~~~~~~~~d~Gv~~v~~iy~~~k~~g 280 (374)
=|.+..|+..+++. ++++.+ |--|--|..+.... ...--.+++|--.-+.....+.+|+...|
T Consensus 87 eV~~~~~~~~v~~~-~DilQIgArn~rn~~LL~a~g~-t~kpV~lKrG~~~t~~e~~~aaeyi~~~G 151 (264)
T PRK05198 87 DVHEPEQAAPVAEV-VDVLQIPAFLCRQTDLLVAAAK-TGKVVNIKKGQFLAPWDMKNVVDKVREAG 151 (264)
T ss_pred EeCCHHHHHHHHhh-CcEEEECchhcchHHHHHHHhc-cCCeEEecCCCcCCHHHHHHHHHHHHHcC
Confidence 99999999999987 554443 22233333332111 00000122332233556666777777765
No 134
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=50.70 E-value=73 Score=30.43 Aligned_cols=47 Identities=15% Similarity=0.173 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHcCccHHHHHhccCChhcHHH--hhCCcEecccHHHH
Q 017271 266 LSLVSKAYNYIHKYGHKSKLMAAAVRNKQDLFS--LLGVDYIIAPLKVL 312 (374)
Q Consensus 266 v~~v~~iy~~~k~~g~~T~vLaAS~Rn~~~i~~--laG~D~lTipp~ll 312 (374)
+.-++++.++++++++++++-+...-|.+.+-. .+|+|.+.+.-.++
T Consensus 155 l~KI~~l~~~~~~~~~~~~IeVDGGI~~eti~~l~~aGaDi~V~GSaiF 203 (223)
T PRK08745 155 LDKLRAIRKKIDALGKPIRLEIDGGVKADNIGAIAAAGADTFVAGSAIF 203 (223)
T ss_pred HHHHHHHHHHHHhcCCCeeEEEECCCCHHHHHHHHHcCCCEEEEChhhh
Confidence 566777777887778788888888889888866 58999998886665
No 135
>COG0119 LeuA Isopropylmalate/homocitrate/citramalate synthases [Amino acid transport and metabolism]
Probab=50.21 E-value=1.1e+02 Score=32.10 Aligned_cols=134 Identities=19% Similarity=0.240 Sum_probs=80.4
Q ss_pred CCccCCHHHHHHHHHHHHHHhcCCCCCCCcEEEEecCChhH-HHHHHHHH-HcCc--eeEE-eecCCHH-HHHHHHHcCC
Q 017271 158 ARLAYDTHGIIRKVHDLLKLYSEIDVPPERLLFKIPSTWQG-IEASRLLE-SEGI--QTHL-TFVYSFA-QAAAAAQAGA 231 (374)
Q Consensus 158 p~la~D~e~~I~eA~~L~~l~~~~gv~~~nVlIKIPaT~eG-i~A~~~L~-~eGI--~vN~-TlIFS~~-QA~aaa~AGa 231 (374)
|...++.++-++-|+.|-++ |+ +.|-+=-|...+| .++++.+. ..|+ .+.. .+..... -..++.++|.
T Consensus 17 ~g~~~s~e~Ki~Ia~~Ld~l----Gv--~~IE~g~p~~s~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ea~~~a~~ 90 (409)
T COG0119 17 PGVSFSVEEKIRIAKALDDL----GV--DYIEAGFPVASPGDFEFVRAIAEKAGLFICALIAALARAIKRDIEALLEAGV 90 (409)
T ss_pred CCCcCCHHHHHHHHHHHHHc----CC--CEEEEeCCcCChhhHHHHHHHHHhcCcccchhhhhhHHhHHhhHHHHHhCCC
Confidence 44567777777777767665 56 7888999987755 44444444 5565 2222 1222222 2334557799
Q ss_pred cEEEechhhhhhhhhcCCCCccchhhhccCCCcHHHHHHHHHHHHHHcCccHH--HHHhccCChhcHHH------hhCCc
Q 017271 232 SVIQIFVGRLRDWARNHSGDPEIDDALKRGEDPALSLVSKAYNYIHKYGHKSK--LMAAAVRNKQDLFS------LLGVD 303 (374)
Q Consensus 232 s~ISpFVGRIdd~~~~~~~d~~~~~~~~~~~d~Gv~~v~~iy~~~k~~g~~T~--vLaAS~Rn~~~i~~------laG~D 303 (374)
..|..|++--+-+.+.+.. .....-++.+++..+|.+.+|.++. ..-++-.+++.+.+ ..||+
T Consensus 91 ~~i~if~~tSd~h~~~~~~---------~t~~e~l~~~~~~v~ya~~~g~~~~~~~Ed~~rt~~~~l~~~~~~~~~~ga~ 161 (409)
T COG0119 91 DRIHIFIATSDLHLRYKLK---------KTREEVLERAVDAVEYARDHGLEVRFSAEDATRTDPEFLAEVVKAAIEAGAD 161 (409)
T ss_pred CEEEEEEcCCHHHHHHHhC---------CCHHHHHHHHHHHHHHHHHcCCeEEEEeeccccCCHHHHHHHHHHHHHcCCc
Confidence 9999998766655433221 1112357888999999999996655 34444445555543 35677
Q ss_pred Eec
Q 017271 304 YII 306 (374)
Q Consensus 304 ~lT 306 (374)
.+.
T Consensus 162 ~i~ 164 (409)
T COG0119 162 RIN 164 (409)
T ss_pred EEE
Confidence 663
No 136
>TIGR00693 thiE thiamine-phosphate pyrophosphorylase. This model includes ThiE from Bacillus subtilis but excludes its paralog, the regulatory protein TenI, and neighbors of TenI.
Probab=50.21 E-value=1.9e+02 Score=25.93 Aligned_cols=96 Identities=13% Similarity=0.075 Sum_probs=57.6
Q ss_pred HHHHHHHHcCceeEEeecCCHHHHHHHHHcCCcEEEechhhhhhhhhcCCCCccchhhhccCCCcHHHHHHHHHHHHHHc
Q 017271 200 EASRLLESEGIQTHLTFVYSFAQAAAAAQAGASVIQIFVGRLRDWARNHSGDPEIDDALKRGEDPALSLVSKAYNYIHKY 279 (374)
Q Consensus 200 ~A~~~L~~eGI~vN~TlIFS~~QA~aaa~AGas~ISpFVGRIdd~~~~~~~d~~~~~~~~~~~d~Gv~~v~~iy~~~k~~ 279 (374)
..++.+...+..+- .-+.+.+++..+.+.|++|+.. |.+.....+ + .. ....|++..+++.+.+
T Consensus 87 ~~~r~~~~~~~~ig-~s~h~~~e~~~a~~~g~dyi~~--~~v~~t~~k----~----~~--~~~~g~~~l~~~~~~~--- 150 (196)
T TIGR00693 87 SEARALLGPDKIIG-VSTHNLEELAEAEAEGADYIGF--GPIFPTPTK----K----DP--APPAGVELLREIAATS--- 150 (196)
T ss_pred HHHHHhcCCCCEEE-EeCCCHHHHHHHhHcCCCEEEE--CCccCCCCC----C----CC--CCCCCHHHHHHHHHhc---
Confidence 44455555555554 4478999999988999999753 444221100 0 00 0012666666554322
Q ss_pred CccHHHHHhccCChhcHHH--hhCCcEecccHHHH
Q 017271 280 GHKSKLMAAAVRNKQDLFS--LLGVDYIIAPLKVL 312 (374)
Q Consensus 280 g~~T~vLaAS~Rn~~~i~~--laG~D~lTipp~ll 312 (374)
.+..+++...-+.+++.+ .+|+|.+.+.-.+.
T Consensus 151 -~~~pv~a~GGI~~~~~~~~~~~G~~gva~~~~i~ 184 (196)
T TIGR00693 151 -IDIPIVAIGGITLENAAEVLAAGADGVAVVSAIM 184 (196)
T ss_pred -CCCCEEEECCcCHHHHHHHHHcCCCEEEEhHHhh
Confidence 135577777777777765 57999998776665
No 137
>PRK05628 coproporphyrinogen III oxidase; Validated
Probab=49.63 E-value=81 Score=31.85 Aligned_cols=44 Identities=20% Similarity=0.392 Sum_probs=32.3
Q ss_pred hHHHHHHHHHHcCce-eEEeecCC-HHHH--------HHHHHcCCcEEEechhh
Q 017271 197 QGIEASRLLESEGIQ-THLTFVYS-FAQA--------AAAAQAGASVIQIFVGR 240 (374)
Q Consensus 197 eGi~A~~~L~~eGI~-vN~TlIFS-~~QA--------~aaa~AGas~ISpFVGR 240 (374)
+-++|++.|.+.|+. +|+.+||. +.|- ..+.+.|+..++.|.=.
T Consensus 145 ~~~~a~~~l~~~g~~~v~~dli~GlPgqt~~~~~~tl~~~~~l~~~~i~~y~l~ 198 (375)
T PRK05628 145 RAVAAAREARAAGFEHVNLDLIYGTPGESDDDWRASLDAALEAGVDHVSAYALI 198 (375)
T ss_pred HHHHHHHHHHHcCCCcEEEEEeccCCCCCHHHHHHHHHHHHhcCCCEEEeeeee
Confidence 558899999999998 99999996 3332 22445688888777533
No 138
>PRK05799 coproporphyrinogen III oxidase; Provisional
Probab=49.21 E-value=83 Score=31.66 Aligned_cols=77 Identities=12% Similarity=0.202 Sum_probs=48.9
Q ss_pred eEEEEecCCccCCHHHHHHHHHHHHHHhcCCCCCCCcEEEEecCCh--------------hHHHHHHHHHHcCce-eEEe
Q 017271 151 RVSTEVDARLAYDTHGIIRKVHDLLKLYSEIDVPPERLLFKIPSTW--------------QGIEASRLLESEGIQ-THLT 215 (374)
Q Consensus 151 ~VS~EVdp~la~D~e~~I~eA~~L~~l~~~~gv~~~nVlIKIPaT~--------------eGi~A~~~L~~eGI~-vN~T 215 (374)
.+++|++|..- + ++.++. .++.|+ .+|-|-|-+.. +-++|++.|.+.|+. +|+.
T Consensus 87 eitie~~p~~~-t-~e~l~~-------l~~~G~--~rvsiGvqS~~d~~L~~l~R~~~~~~~~~ai~~l~~~g~~~v~~d 155 (374)
T PRK05799 87 EFTVEGNPGTF-T-EEKLKI-------LKSMGV--NRLSIGLQAWQNSLLKYLGRIHTFEEFLENYKLARKLGFNNINVD 155 (374)
T ss_pred EEEEEeCCCcC-C-HHHHHH-------HHHcCC--CEEEEECccCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCcEEEE
Confidence 68888888532 2 222222 233345 45666665544 347888999999996 9999
Q ss_pred ecCCH-HHHH--------HHHHcCCcEEEech
Q 017271 216 FVYSF-AQAA--------AAAQAGASVIQIFV 238 (374)
Q Consensus 216 lIFS~-~QA~--------aaa~AGas~ISpFV 238 (374)
++|.+ .|-. .+.+.|+.-||.|.
T Consensus 156 li~GlPgqt~e~~~~~l~~~~~l~~~~is~y~ 187 (374)
T PRK05799 156 LMFGLPNQTLEDWKETLEKVVELNPEHISCYS 187 (374)
T ss_pred eecCCCCCCHHHHHHHHHHHHhcCCCEEEEec
Confidence 99985 3422 24456877777765
No 139
>PLN03033 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=49.08 E-value=1.9e+02 Score=29.09 Aligned_cols=125 Identities=18% Similarity=0.210 Sum_probs=80.7
Q ss_pred EEEEecCCccCCHHHHHHHHHHHHHHhcCCCCCCCcEEEEe-----cCC----------hhHHHHHHHHHHc-CceeEEe
Q 017271 152 VSTEVDARLAYDTHGIIRKVHDLLKLYSEIDVPPERLLFKI-----PST----------WQGIEASRLLESE-GIQTHLT 215 (374)
Q Consensus 152 VS~EVdp~la~D~e~~I~eA~~L~~l~~~~gv~~~nVlIKI-----PaT----------~eGi~A~~~L~~e-GI~vN~T 215 (374)
..+=--|.-..+.|.+++-|+.+.++.++.|+ +++.|= |=| ++|++-.++..++ |+++ +|
T Consensus 17 ~~lIAGPC~iEs~e~~~~~A~~lk~~~~~~g~---~~i~kgsfkKApRTSp~sFrG~G~eeGL~iL~~vk~~~glpv-vT 92 (290)
T PLN03033 17 FFLLAGPNVIESEEHILRMAKHIKDISTKLGL---PLVFKSSFDKANRTSSKSFRGPGMAEGLKILEKVKVAYDLPI-VT 92 (290)
T ss_pred eEEEecCChhcCHHHHHHHHHHHHHHHHhCCC---cEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCce-EE
Confidence 44444455555688899999999998877776 344442 322 4788888888877 9999 99
Q ss_pred ecCCHHHHHHHHHcCCcEEEe--chhhhhhhhhcCCCCccchhhhccCCCcHHHHHHHHHHHHHHcCcc
Q 017271 216 FVYSFAQAAAAAQAGASVIQI--FVGRLRDWARNHSGDPEIDDALKRGEDPALSLVSKAYNYIHKYGHK 282 (374)
Q Consensus 216 lIFS~~QA~aaa~AGas~ISp--FVGRIdd~~~~~~~d~~~~~~~~~~~d~Gv~~v~~iy~~~k~~g~~ 282 (374)
=|.+.+|+..+++. ++++.+ |--|.-|..++... ...--.+++|--..+.....+.+|+...|.+
T Consensus 93 eV~~~~q~~~vae~-~DilQIgAr~~rqtdLL~a~~~-tgkpV~lKkGq~~t~~e~~~aaeki~~~GN~ 159 (290)
T PLN03033 93 DVHESSQCEAVGKV-ADIIQIPAFLCRQTDLLVAAAK-TGKIINIKKGQFCAPSVMRNSAEKVRLAGNP 159 (290)
T ss_pred eeCCHHHHHHHHhh-CcEEeeCcHHHHHHHHHHHHHc-cCCeEEeCCCCCCCHHHHHHHHHHHHHcCCC
Confidence 99999999999987 344433 44566666543221 0000122344344567777777788777643
No 140
>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=48.53 E-value=2.2e+02 Score=26.21 Aligned_cols=104 Identities=20% Similarity=0.250 Sum_probs=60.9
Q ss_pred ecCChhHHHHHHHHHHcCceeEEeecCCHHHHHHHHHcCCcEEEechhhhhhhhhcCCCCccchhhhccCCCcHHHHHHH
Q 017271 192 IPSTWQGIEASRLLESEGIQTHLTFVYSFAQAAAAAQAGASVIQIFVGRLRDWARNHSGDPEIDDALKRGEDPALSLVSK 271 (374)
Q Consensus 192 IPaT~eGi~A~~~L~~eGI~vN~TlIFS~~QA~aaa~AGas~ISpFVGRIdd~~~~~~~d~~~~~~~~~~~d~Gv~~v~~ 271 (374)
||.. +-.+.++.+.+.|+.+ +..+.+.+++..+.++|++++... ++- .-+ +.. .........+++
T Consensus 86 l~~~-~~~~~~~~~~~~~i~~-i~~v~~~~~~~~~~~~gad~i~~~-~~~-~~G--~~~---------~~~~~~~~~i~~ 150 (236)
T cd04730 86 FSFG-PPAEVVERLKAAGIKV-IPTVTSVEEARKAEAAGADALVAQ-GAE-AGG--HRG---------TFDIGTFALVPE 150 (236)
T ss_pred EcCC-CCHHHHHHHHHcCCEE-EEeCCCHHHHHHHHHcCCCEEEEe-CcC-CCC--CCC---------ccccCHHHHHHH
Confidence 4554 3456677777788887 445788999999999999987643 321 000 000 000134445555
Q ss_pred HHHHHHHcCccHHHHH-hccCChhcHHH--hhCCcEecccHHHHHHH
Q 017271 272 AYNYIHKYGHKSKLMA-AAVRNKQDLFS--LLGVDYIIAPLKVLQSL 315 (374)
Q Consensus 272 iy~~~k~~g~~T~vLa-AS~Rn~~~i~~--laG~D~lTipp~ll~~L 315 (374)
+.+.. +..+++ -.+++.+++.+ ..|+|.+.+.-.++...
T Consensus 151 i~~~~-----~~Pvi~~GGI~~~~~v~~~l~~GadgV~vgS~l~~~~ 192 (236)
T cd04730 151 VRDAV-----DIPVIAAGGIADGRGIAAALALGADGVQMGTRFLATE 192 (236)
T ss_pred HHHHh-----CCCEEEECCCCCHHHHHHHHHcCCcEEEEchhhhcCc
Confidence 44322 233443 34445577766 48999988877766655
No 141
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=48.04 E-value=50 Score=35.07 Aligned_cols=123 Identities=21% Similarity=0.229 Sum_probs=75.5
Q ss_pred HHHHHHHHHhcCCCCCCCcEEEEecCCh--hHHHHHHHHHHc--CceeEEeecCCHHHHHHHHHcCCcEEEechh--hhh
Q 017271 169 RKVHDLLKLYSEIDVPPERLLFKIPSTW--QGIEASRLLESE--GIQTHLTFVYSFAQAAAAAQAGASVIQIFVG--RLR 242 (374)
Q Consensus 169 ~eA~~L~~l~~~~gv~~~nVlIKIPaT~--eGi~A~~~L~~e--GI~vN~TlIFS~~QA~aaa~AGas~ISpFVG--RId 242 (374)
+.++.|++. |+ +-|+|-+.--+ .=+.+++.+++. ++.+-+--+-+.+++..+.++|+.+|.+=+| .+.
T Consensus 228 ~ra~~Lv~a----GV--d~i~~D~a~g~~~~~~~~i~~i~~~~~~~~vi~g~~~t~~~~~~l~~~G~d~i~vg~g~Gs~~ 301 (475)
T TIGR01303 228 GKAKALLDA----GV--DVLVIDTAHGHQVKMISAIKAVRALDLGVPIVAGNVVSAEGVRDLLEAGANIIKVGVGPGAMC 301 (475)
T ss_pred HHHHHHHHh----CC--CEEEEeCCCCCcHHHHHHHHHHHHHCCCCeEEEeccCCHHHHHHHHHhCCCEEEECCcCCccc
Confidence 444445553 34 34555443311 226677888877 8999998899999999999999998874332 222
Q ss_pred hhhhcCCCCccchhhhccCCCcHHHHHHHHHHHHHHcCccHHHHH-hccCChhcHHH--hhCCcEecccHH
Q 017271 243 DWARNHSGDPEIDDALKRGEDPALSLVSKAYNYIHKYGHKSKLMA-AAVRNKQDLFS--LLGVDYIIAPLK 310 (374)
Q Consensus 243 d~~~~~~~d~~~~~~~~~~~d~Gv~~v~~iy~~~k~~g~~T~vLa-AS~Rn~~~i~~--laG~D~lTipp~ 310 (374)
..- .+..-.-|-+..+.++.+..++++ ..+++ -.+|+..++.. .+|+|.+.+.-.
T Consensus 302 ttr-----------~~~~~g~~~~~a~~~~~~~~~~~~--~~viadGgi~~~~di~kala~GA~~vm~g~~ 359 (475)
T TIGR01303 302 TTR-----------MMTGVGRPQFSAVLECAAEARKLG--GHVWADGGVRHPRDVALALAAGASNVMVGSW 359 (475)
T ss_pred cCc-----------cccCCCCchHHHHHHHHHHHHHcC--CcEEEeCCCCCHHHHHHHHHcCCCEEeechh
Confidence 100 000001133444445555556654 34554 56789999987 589999988754
No 142
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=47.87 E-value=13 Score=35.73 Aligned_cols=132 Identities=8% Similarity=0.055 Sum_probs=78.0
Q ss_pred HHHHHHHHHHHHhcCCCCCCCcEEEEecCChhHHHHHHHHHHcCceeEEeecCCHHHHHHHHHcCCcEEEechhhhhhhh
Q 017271 166 GIIRKVHDLLKLYSEIDVPPERLLFKIPSTWQGIEASRLLESEGIQTHLTFVYSFAQAAAAAQAGASVIQIFVGRLRDWA 245 (374)
Q Consensus 166 ~~I~eA~~L~~l~~~~gv~~~nVlIKIPaT~eGi~A~~~L~~eGI~vN~TlIFS~~QA~aaa~AGas~ISpFVGRIdd~~ 245 (374)
=|++.-.+.++.|.+.|. +.|.|=+=++..-.+.++.+.+.|+++-+-+.+++..-+... -||++.+|--.
T Consensus 75 LMv~~P~~~i~~~~~aGa--d~It~H~Ea~~~~~~~l~~Ik~~g~~~kaGlalnP~Tp~~~i-------~~~l~~vD~VL 145 (228)
T PRK08091 75 LMVRDQFEVAKACVAAGA--DIVTLQVEQTHDLALTIEWLAKQKTTVLIGLCLCPETPISLL-------EPYLDQIDLIQ 145 (228)
T ss_pred eccCCHHHHHHHHHHhCC--CEEEEcccCcccHHHHHHHHHHCCCCceEEEEECCCCCHHHH-------HHHHhhcCEEE
Confidence 344444444444544454 678888888877778889999999844444444443322221 12222222110
Q ss_pred hcCCCCccchhhhccC---CCcHHHHHHHHHHHHHHcCccHHHHHhccCChhcHHH--hhCCcEecccHHHH
Q 017271 246 RNHSGDPEIDDALKRG---EDPALSLVSKAYNYIHKYGHKSKLMAAAVRNKQDLFS--LLGVDYIIAPLKVL 312 (374)
Q Consensus 246 ~~~~~d~~~~~~~~~~---~d~Gv~~v~~iy~~~k~~g~~T~vLaAS~Rn~~~i~~--laG~D~lTipp~ll 312 (374)
- -..+++ . .| ....+.-++++.++++++|+++.+-+-..-|.+++-. .+|+|.+.+.-.++
T Consensus 146 i-MtV~PG----f-gGQ~f~~~~l~KI~~lr~~~~~~~~~~~IeVDGGI~~~ti~~l~~aGaD~~V~GSalF 211 (228)
T PRK08091 146 I-LTLDPR----T-GTKAPSDLILDRVIQVENRLGNRRVEKLISIDGSMTLELASYLKQHQIDWVVSGSALF 211 (228)
T ss_pred E-EEECCC----C-CCccccHHHHHHHHHHHHHHHhcCCCceEEEECCCCHHHHHHHHHCCCCEEEEChhhh
Confidence 0 000000 0 00 1134677888888888888888888888888888865 59999998886655
No 143
>TIGR01362 KDO8P_synth 3-deoxy-8-phosphooctulonate synthase. In Gram-negative bacteria, this is the first step in the biosynthesis of 3-deoxy-D-manno-octulosonate, part of the oligosaccharide core of lipopolysaccharide.
Probab=47.79 E-value=1.3e+02 Score=29.73 Aligned_cols=114 Identities=20% Similarity=0.213 Sum_probs=68.3
Q ss_pred CCHHHHHHHHHHHHHHhcCCCCCCCcEEEE-----ecCC----------hhHHHHHHHHHHc-CceeEEeecCCHHHHHH
Q 017271 162 YDTHGIIRKVHDLLKLYSEIDVPPERLLFK-----IPST----------WQGIEASRLLESE-GIQTHLTFVYSFAQAAA 225 (374)
Q Consensus 162 ~D~e~~I~eA~~L~~l~~~~gv~~~nVlIK-----IPaT----------~eGi~A~~~L~~e-GI~vN~TlIFS~~QA~a 225 (374)
.+.+.+++-|+.+.+....+|+ ..+.| =|=| ++|++-.++..++ |+++ +|=|.+..|+..
T Consensus 13 Es~e~~~~~A~~lk~~~~~~~~---~~~fk~sf~KapRTsp~sFqG~G~eeGL~iL~~vk~~~glpv-vTeV~~~~~~~~ 88 (258)
T TIGR01362 13 ESEDHALRVAEKLKELTSKLGV---PFIFKSSFDKANRSSIHSFRGPGLEEGLKILQKVKEEFGVPI-LTDVHESSQCEP 88 (258)
T ss_pred cCHHHHHHHHHHHHHHHHhcCC---CeEEecccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCce-EEEeCCHHHHHH
Confidence 3477788889999888766655 34555 1333 3678888888777 9999 899999999999
Q ss_pred HHHcCCcEEEec--hhhhhhhhhcCCCCccchhhhccCCCcHHHHHHHHHHHHHHcCc
Q 017271 226 AAQAGASVIQIF--VGRLRDWARNHSGDPEIDDALKRGEDPALSLVSKAYNYIHKYGH 281 (374)
Q Consensus 226 aa~AGas~ISpF--VGRIdd~~~~~~~d~~~~~~~~~~~d~Gv~~v~~iy~~~k~~g~ 281 (374)
+++. ++++.+= --|--+..+.... ...--.+++|.-.-+.....+.+|+...|.
T Consensus 89 vae~-vDilQIgArn~rn~~LL~a~g~-t~kpV~lKrG~~~t~~e~l~aaeyi~~~Gn 144 (258)
T TIGR01362 89 VAEV-VDIIQIPAFLCRQTDLLVAAAK-TGRIVNVKKGQFLSPWDMKNVVEKVLSTGN 144 (258)
T ss_pred HHhh-CcEEEeCchhcchHHHHHHHhc-cCCeEEecCCCcCCHHHHHHHHHHHHHcCC
Confidence 9987 5554432 2233333332111 000001223322234555666667776653
No 144
>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=47.59 E-value=27 Score=32.20 Aligned_cols=86 Identities=13% Similarity=0.032 Sum_probs=57.3
Q ss_pred HHHHHHHHcCceeEEeecCCHHHHHHHHHcCCcEEEechhhhhhhhhcCCCCccchhhhccCCCcHHHHHHHHHHHHHHc
Q 017271 200 EASRLLESEGIQTHLTFVYSFAQAAAAAQAGASVIQIFVGRLRDWARNHSGDPEIDDALKRGEDPALSLVSKAYNYIHKY 279 (374)
Q Consensus 200 ~A~~~L~~eGI~vN~TlIFS~~QA~aaa~AGas~ISpFVGRIdd~~~~~~~d~~~~~~~~~~~d~Gv~~v~~iy~~~k~~ 279 (374)
.-++.....|+..-. -++++.|+..|.++|++|+-+|-..- -.|+..++.+...+
T Consensus 96 ~~~~~~~~~~~~~i~-G~~t~~e~~~A~~~Gadyv~~Fpt~~---------------------~~G~~~l~~~~~~~--- 150 (187)
T PRK07455 96 ELIEAAVAQDIPIIP-GALTPTEIVTAWQAGASCVKVFPVQA---------------------VGGADYIKSLQGPL--- 150 (187)
T ss_pred HHHHHHHHcCCCEEc-CcCCHHHHHHHHHCCCCEEEECcCCc---------------------ccCHHHHHHHHhhC---
Confidence 334444455665433 38999999999999999999865310 02565555554432
Q ss_pred CccHHHHHhccCChhcHHH--hhCCcEecccHHH
Q 017271 280 GHKSKLMAAAVRNKQDLFS--LLGVDYIIAPLKV 311 (374)
Q Consensus 280 g~~T~vLaAS~Rn~~~i~~--laG~D~lTipp~l 311 (374)
.+..+|+-..-+.+++-+ .+|++.+-+.-.+
T Consensus 151 -~~ipvvaiGGI~~~n~~~~l~aGa~~vav~s~i 183 (187)
T PRK07455 151 -GHIPLIPTGGVTLENAQAFIQAGAIAVGLSGQL 183 (187)
T ss_pred -CCCcEEEeCCCCHHHHHHHHHCCCeEEEEehhc
Confidence 246678887888888866 5899988655443
No 145
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=47.03 E-value=3e+02 Score=28.27 Aligned_cols=132 Identities=15% Similarity=0.214 Sum_probs=82.3
Q ss_pred CCeEEEEecCCccCCHHHHHHHHHHHHHHhcCCCCCCCcEEEEecCCh--hHHHHHHHHHHc--CceeEEeecCCHHHHH
Q 017271 149 PGRVSTEVDARLAYDTHGIIRKVHDLLKLYSEIDVPPERLLFKIPSTW--QGIEASRLLESE--GIQTHLTFVYSFAQAA 224 (374)
Q Consensus 149 ~G~VS~EVdp~la~D~e~~I~eA~~L~~l~~~~gv~~~nVlIKIPaT~--eGi~A~~~L~~e--GI~vN~TlIFS~~QA~ 224 (374)
.+++++-|-- .++..+++..|++.. -..+-|+|-+.--. -=++.++.+++. +..+-+-=|-+.++|.
T Consensus 95 ~~~~~vsvG~-----~~~d~er~~~L~~a~----~~~d~iviD~AhGhs~~~i~~ik~ir~~~p~~~viaGNV~T~e~a~ 165 (343)
T TIGR01305 95 LQNVAVSSGS-----SDNDLEKMTSILEAV----PQLKFICLDVANGYSEHFVEFVKLVREAFPEHTIMAGNVVTGEMVE 165 (343)
T ss_pred cceEEEEecc-----CHHHHHHHHHHHhcC----CCCCEEEEECCCCcHHHHHHHHHHHHhhCCCCeEEEecccCHHHHH
Confidence 4566665522 333456666666642 22366888776544 237778888875 6666566689999999
Q ss_pred HHHHcCCcEEEec-------hhhhhhhhhcCCCCccchhhhccCC-CcHHHHHHHHHHHHHHcCccHHHHH-hccCChhc
Q 017271 225 AAAQAGASVIQIF-------VGRLRDWARNHSGDPEIDDALKRGE-DPALSLVSKAYNYIHKYGHKSKLMA-AAVRNKQD 295 (374)
Q Consensus 225 aaa~AGas~ISpF-------VGRIdd~~~~~~~d~~~~~~~~~~~-d~Gv~~v~~iy~~~k~~g~~T~vLa-AS~Rn~~~ 295 (374)
.+.++|+..|=+= .+|..+ |. .|-+..+.++.+..+ +++..|++ ..+|+..+
T Consensus 166 ~Li~aGAD~ikVgiGpGSicttR~~~-----------------Gvg~pqltAv~~~a~aa~--~~~v~VIaDGGIr~~gD 226 (343)
T TIGR01305 166 ELILSGADIVKVGIGPGSVCTTRTKT-----------------GVGYPQLSAVIECADAAH--GLKGHIISDGGCTCPGD 226 (343)
T ss_pred HHHHcCCCEEEEcccCCCcccCceeC-----------------CCCcCHHHHHHHHHHHhc--cCCCeEEEcCCcCchhH
Confidence 9999998765433 333321 11 133444444444433 33455554 67899999
Q ss_pred HHH--hhCCcEeccc
Q 017271 296 LFS--LLGVDYIIAP 308 (374)
Q Consensus 296 i~~--laG~D~lTip 308 (374)
|.. .+|+|.+.+.
T Consensus 227 I~KALA~GAd~VMlG 241 (343)
T TIGR01305 227 VAKAFGAGADFVMLG 241 (343)
T ss_pred HHHHHHcCCCEEEEC
Confidence 987 5899999888
No 146
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=46.94 E-value=44 Score=31.62 Aligned_cols=109 Identities=13% Similarity=0.134 Sum_probs=72.3
Q ss_pred HHHHHHHHHhcCCCCCCCcEEEEecCChhHHHHHHHHHHcCceeEEeecCCHHHHHHHHHcCCcEEEechhhhhhhhhcC
Q 017271 169 RKVHDLLKLYSEIDVPPERLLFKIPSTWQGIEASRLLESEGIQTHLTFVYSFAQAAAAAQAGASVIQIFVGRLRDWARNH 248 (374)
Q Consensus 169 ~eA~~L~~l~~~~gv~~~nVlIKIPaT~eGi~A~~~L~~eGI~vN~TlIFS~~QA~aaa~AGas~ISpFVGRIdd~~~~~ 248 (374)
+++++.++.. -+++| =|.+.+. .++.....||.+ +=-++|+.|+..|.++|++|+-.|-..
T Consensus 79 ~~~~~a~~aG-------A~Fiv-sP~~~~~--v~~~~~~~~i~~-iPG~~T~~E~~~A~~~Gad~vklFPa~-------- 139 (213)
T PRK06552 79 VTARLAILAG-------AQFIV-SPSFNRE--TAKICNLYQIPY-LPGCMTVTEIVTALEAGSEIVKLFPGS-------- 139 (213)
T ss_pred HHHHHHHHcC-------CCEEE-CCCCCHH--HHHHHHHcCCCE-ECCcCCHHHHHHHHHcCCCEEEECCcc--------
Confidence 4555555543 34444 4544443 334455678887 668899999999999999999987411
Q ss_pred CCCccchhhhccCCCcHHHHHHHHHHHHHHcCccHHHHHhccCChhcHHH--hhCCcEecccHHHHHH
Q 017271 249 SGDPEIDDALKRGEDPALSLVSKAYNYIHKYGHKSKLMAAAVRNKQDLFS--LLGVDYIIAPLKVLQS 314 (374)
Q Consensus 249 ~~d~~~~~~~~~~~d~Gv~~v~~iy~~~k~~g~~T~vLaAS~Rn~~~i~~--laG~D~lTipp~ll~~ 314 (374)
.-|...++.+...+ ....+|+...-+.+++.+ .+|++.+.+.-.+...
T Consensus 140 --------------~~G~~~ik~l~~~~----p~ip~~atGGI~~~N~~~~l~aGa~~vavgs~l~~~ 189 (213)
T PRK06552 140 --------------TLGPSFIKAIKGPL----PQVNVMVTGGVNLDNVKDWFAAGADAVGIGGELNKL 189 (213)
T ss_pred --------------cCCHHHHHHHhhhC----CCCEEEEECCCCHHHHHHHHHCCCcEEEEchHHhCc
Confidence 02444444443322 346688888889999988 5899999887776543
No 147
>PF00563 EAL: EAL domain; InterPro: IPR001633 This domain is found in diverse bacterial signalling proteins. It is called EAL after its conserved residues. The EAL domain is a good candidate for a diguanylate phosphodiesterase function []. The domain contains many conserved acidic residues that could participate in metal binding and might form the phosphodiesterase active site. It often but not always occurs along with IPR000014 from INTERPRO and IPR000160 from INTERPRO domains that are also found in many signalling proteins.; PDB: 3PJU_A 3PJX_A 3PJW_A 3PJT_B 3KZP_B 3U2E_B 3S83_A 2R6O_B 3N3T_B 3GG1_A ....
Probab=46.91 E-value=1.1e+02 Score=27.50 Aligned_cols=135 Identities=25% Similarity=0.290 Sum_probs=80.0
Q ss_pred CCCeEEEEecCCccCCHHHHHHHHHHHHHHhcCCCCCCCcEEEEecCC--h---hHHHHHHHHHHcCceeEEeecCCHH-
Q 017271 148 VPGRVSTEVDARLAYDTHGIIRKVHDLLKLYSEIDVPPERLLFKIPST--W---QGIEASRLLESEGIQTHLTFVYSFA- 221 (374)
Q Consensus 148 v~G~VS~EVdp~la~D~e~~I~eA~~L~~l~~~~gv~~~nVlIKIPaT--~---eGi~A~~~L~~eGI~vN~TlIFS~~- 221 (374)
-+.++++-+++..-.|.+ .++. +..+. +.+.+..++++.|+.+ . ...+.++.|.+.|+++-+.-+-+-.
T Consensus 86 ~~~~l~v~i~~~~l~~~~-f~~~---l~~~l-~~~~~~~~l~lei~e~~~~~~~~~~~~l~~l~~~G~~i~ld~~g~~~~ 160 (236)
T PF00563_consen 86 PDLPLFVNISPESLLDPE-FLDW---LSNLL-QYGLPPSRLVLEISENDLPNDAELLENLRRLRSLGFRIALDDFGSGSS 160 (236)
T ss_dssp TTSEEEEEE-HHHHGSCC-HHHH---HHHHH-HTTGGGGGEEEEEEGHHHHHHHHHHHHHHHHHHCT-EEEEEEETSTCG
T ss_pred CCceEEEEeehhhhhccc-cccc---ccccc-cccccccceEEEEechHhhhhHHHHHHHHHHHhcCceeEeeeccCCcc
Confidence 356888888776544443 2222 33333 4456678899999998 2 3357888899999999877552211
Q ss_pred HHHHHHHcCCcEEEechhhhhhhhhcCCCCccchhhhccCCCcHHHHHHHHHHHHHHcCccHHHHHhccCChhcHHH--h
Q 017271 222 QAAAAAQAGASVIQIFVGRLRDWARNHSGDPEIDDALKRGEDPALSLVSKAYNYIHKYGHKSKLMAAAVRNKQDLFS--L 299 (374)
Q Consensus 222 QA~aaa~AGas~ISpFVGRIdd~~~~~~~d~~~~~~~~~~~d~Gv~~v~~iy~~~k~~g~~T~vLaAS~Rn~~~i~~--l 299 (374)
.-.........+|-.=...+.+.. ....-..++.+.++.+++| .++++..+.+..+.-. .
T Consensus 161 ~~~~l~~l~~~~ikld~~~~~~~~----------------~~~~~~~l~~l~~~~~~~~--~~via~gVe~~~~~~~l~~ 222 (236)
T PF00563_consen 161 SLEYLASLPPDYIKLDGSLVRDLS----------------DEEAQSLLQSLINLAKSLG--IKVIAEGVESEEQLELLKE 222 (236)
T ss_dssp CHHHHHHHCGSEEEEEHHGHTTTT----------------SHHHHHHHHHHHHHHHHTT---EEEEECE-SHHHHHHHHH
T ss_pred hhhhhhhcccccceeecccccccc----------------hhhHHHHHHHHHHHhhccc--cccceeecCCHHHHHHHHH
Confidence 111133445555554444442210 0123456666777777775 4578888888877754 6
Q ss_pred hCCcEe
Q 017271 300 LGVDYI 305 (374)
Q Consensus 300 aG~D~l 305 (374)
.|||++
T Consensus 223 ~G~~~~ 228 (236)
T PF00563_consen 223 LGVDYI 228 (236)
T ss_dssp TTESEE
T ss_pred cCCCEE
Confidence 899986
No 148
>PRK09058 coproporphyrinogen III oxidase; Provisional
Probab=46.85 E-value=1.9e+02 Score=30.15 Aligned_cols=81 Identities=11% Similarity=0.131 Sum_probs=53.0
Q ss_pred CeEEEEecCCccCCHHHHHHHHHHHHHHhcCCCCCCCcEEEEecCCh--------------hHHHHHHHHHHcC-ceeEE
Q 017271 150 GRVSTEVDARLAYDTHGIIRKVHDLLKLYSEIDVPPERLLFKIPSTW--------------QGIEASRLLESEG-IQTHL 214 (374)
Q Consensus 150 G~VS~EVdp~la~D~e~~I~eA~~L~~l~~~~gv~~~nVlIKIPaT~--------------eGi~A~~~L~~eG-I~vN~ 214 (374)
-.+++|.+|.. .|. +. +++.++.|+ .||-|-|-+-. +-+++++.+.+.| +++|+
T Consensus 150 ~eitiE~~p~~-~t~-e~-------l~~l~~aGv--nRiSiGVQSf~d~vLk~lgR~~~~~~~~~~i~~l~~~g~~~v~~ 218 (449)
T PRK09058 150 CEITLEGRING-FDD-EK-------ADAALDAGA--NRFSIGVQSFNTQVRRRAGRKDDREEVLARLEELVARDRAAVVC 218 (449)
T ss_pred CEEEEEeCcCc-CCH-HH-------HHHHHHcCC--CEEEecCCcCCHHHHHHhCCCCCHHHHHHHHHHHHhCCCCcEEE
Confidence 47999999963 232 22 223344566 56777666532 4578888999999 89999
Q ss_pred eecCCH-HHH--------HHHHHcCCcEEEechhhh
Q 017271 215 TFVYSF-AQA--------AAAAQAGASVIQIFVGRL 241 (374)
Q Consensus 215 TlIFS~-~QA--------~aaa~AGas~ISpFVGRI 241 (374)
.+||.+ .|. ..+.+.|+.-|+.|.=.+
T Consensus 219 DlI~GlPgqT~e~~~~~l~~~~~l~~~~is~y~L~~ 254 (449)
T PRK09058 219 DLIFGLPGQTPEIWQQDLAIVRDLGLDGVDLYALNL 254 (449)
T ss_pred EEEeeCCCCCHHHHHHHHHHHHhcCCCEEEEecccc
Confidence 999973 232 224456888888775443
No 149
>PRK09057 coproporphyrinogen III oxidase; Provisional
Probab=46.65 E-value=90 Score=31.74 Aligned_cols=45 Identities=13% Similarity=0.180 Sum_probs=32.4
Q ss_pred hHHHHHHHHHHcCceeEEeecCCH-HHHH--------HHHHcCCcEEEechhhh
Q 017271 197 QGIEASRLLESEGIQTHLTFVYSF-AQAA--------AAAQAGASVIQIFVGRL 241 (374)
Q Consensus 197 eGi~A~~~L~~eGI~vN~TlIFS~-~QA~--------aaa~AGas~ISpFVGRI 241 (374)
+-++|++.+.+.|+++|+.+||.+ .|-. .+.+.|+.-||.|.=.+
T Consensus 141 ~~~~ai~~~~~~~~~v~~dli~GlPgqt~~~~~~~l~~~~~l~p~~is~y~L~~ 194 (380)
T PRK09057 141 EALAAIDLAREIFPRVSFDLIYARPGQTLAAWRAELKEALSLAADHLSLYQLTI 194 (380)
T ss_pred HHHHHHHHHHHhCccEEEEeecCCCCCCHHHHHHHHHHHHhcCCCeEEeeccee
Confidence 557888888888999999999994 4433 23455887777774333
No 150
>cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=46.63 E-value=35 Score=33.27 Aligned_cols=84 Identities=18% Similarity=0.167 Sum_probs=53.2
Q ss_pred HHHHHHHHHHcCceeEEeecCCHHHHHHHHHcCCcEEEechhhhhhhhhcCCCCccchhhhccCCCcHHHHHHHHHHHHH
Q 017271 198 GIEASRLLESEGIQTHLTFVYSFAQAAAAAQAGASVIQIFVGRLRDWARNHSGDPEIDDALKRGEDPALSLVSKAYNYIH 277 (374)
Q Consensus 198 Gi~A~~~L~~eGI~vN~TlIFS~~QA~aaa~AGas~ISpFVGRIdd~~~~~~~d~~~~~~~~~~~d~Gv~~v~~iy~~~k 277 (374)
-++.+++....+..+ .--+-+++|+..|+++|++||-. +. -....++++.++.+
T Consensus 170 ~v~~~r~~~~~~~~I-~vev~t~eea~~A~~~gaD~I~l--d~-----------------------~~~e~l~~~v~~i~ 223 (269)
T cd01568 170 AVKRARAAAPFEKKI-EVEVETLEEAEEALEAGADIIML--DN-----------------------MSPEELKEAVKLLK 223 (269)
T ss_pred HHHHHHHhCCCCCeE-EEecCCHHHHHHHHHcCCCEEEE--CC-----------------------CCHHHHHHHHHHhc
Confidence 355555554323332 23347899999999999999876 11 12244555556555
Q ss_pred HcCccHHHHHhccCChhcHHH--hhCCcEeccc
Q 017271 278 KYGHKSKLMAAAVRNKQDLFS--LLGVDYIIAP 308 (374)
Q Consensus 278 ~~g~~T~vLaAS~Rn~~~i~~--laG~D~lTip 308 (374)
+. .+..+.+...-|.+++.+ .+|+|.+.+.
T Consensus 224 ~~-~~i~i~asGGIt~~ni~~~a~~Gad~Isvg 255 (269)
T cd01568 224 GL-PRVLLEASGGITLENIRAYAETGVDVISTG 255 (269)
T ss_pred cC-CCeEEEEECCCCHHHHHHHHHcCCCEEEEc
Confidence 44 344555666778899876 6899998664
No 151
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=46.58 E-value=2.1e+02 Score=29.08 Aligned_cols=133 Identities=17% Similarity=0.183 Sum_probs=76.8
Q ss_pred ccCCHHHHHHHHHHHHHHhcCCCCCCCcEEEEecCCh-hHHHHHHHHHHcCceeEEeecC--CHHHHHHHHHcCCcEEEe
Q 017271 160 LAYDTHGIIRKVHDLLKLYSEIDVPPERLLFKIPSTW-QGIEASRLLESEGIQTHLTFVY--SFAQAAAAAQAGASVIQI 236 (374)
Q Consensus 160 la~D~e~~I~eA~~L~~l~~~~gv~~~nVlIKIPaT~-eGi~A~~~L~~eGI~vN~TlIF--S~~QA~aaa~AGas~ISp 236 (374)
..+.+++.++-++.|.++ || +.|=+=.|+.. +=.++++.+.+.+.++.+.... ...-...+.++|+..|-.
T Consensus 17 ~~~s~~~k~~ia~~L~~~----Gv--~~IEvG~p~~~~~~~e~i~~i~~~~~~~~v~~~~r~~~~di~~a~~~g~~~i~i 90 (363)
T TIGR02090 17 VSLTVEQKVEIARKLDEL----GV--DVIEAGFPIASEGEFEAIKKISQEGLNAEICSLARALKKDIDKAIDCGVDSIHT 90 (363)
T ss_pred CCCCHHHHHHHHHHHHHc----CC--CEEEEeCCCCChHHHHHHHHHHhcCCCcEEEEEcccCHHHHHHHHHcCcCEEEE
Confidence 556777777666666554 56 55555667665 3367777777777665554322 345556677889988888
Q ss_pred chhhhhhhhhcCCCCccchhhhccCCCcHHHHHHHHHHHHHHcCccHHHH--HhccCChhcHHH------hhCCcEecc
Q 017271 237 FVGRLRDWARNHSGDPEIDDALKRGEDPALSLVSKAYNYIHKYGHKSKLM--AAAVRNKQDLFS------LLGVDYIIA 307 (374)
Q Consensus 237 FVGRIdd~~~~~~~d~~~~~~~~~~~d~Gv~~v~~iy~~~k~~g~~T~vL--aAS~Rn~~~i~~------laG~D~lTi 307 (374)
|++==+-+...+.+ ...+..+..+.++.++.+++|.+..+- -++-.+.+.+.+ .+|+|.+.+
T Consensus 91 ~~~~Sd~~~~~~~~---------~~~~~~~~~~~~~i~~ak~~G~~v~~~~eda~r~~~~~l~~~~~~~~~~g~~~i~l 160 (363)
T TIGR02090 91 FIATSPIHLKYKLK---------KSRDEVLEKAVEAVEYAKEHGLIVEFSAEDATRTDIDFLIKVFKRAEEAGADRINI 160 (363)
T ss_pred EEcCCHHHHHHHhC---------CCHHHHHHHHHHHHHHHHHcCCEEEEEEeecCCCCHHHHHHHHHHHHhCCCCEEEE
Confidence 77632221111111 111235777888888888888765432 222233444432 368777643
No 152
>cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds. Typical members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), 2-methylisocitrate lyase (MICL), and ketopantoate hydroxymethyltransferase (KPHMT).
Probab=45.61 E-value=2.9e+02 Score=26.67 Aligned_cols=92 Identities=15% Similarity=0.100 Sum_probs=63.5
Q ss_pred hHHHHHHHHhcCCC-CeEEEEecCCccCCHHHHHHHHHHHHHHhcCCCCCCCcEEEEecCChhHHHHHHHHHHcCceeEE
Q 017271 136 ALVNVGGDLAKMVP-GRVSTEVDARLAYDTHGIIRKVHDLLKLYSEIDVPPERLLFKIPSTWQGIEASRLLESEGIQTHL 214 (374)
Q Consensus 136 ~~v~~g~eil~~v~-G~VS~EVdp~la~D~e~~I~eA~~L~~l~~~~gv~~~nVlIKIPaT~eGi~A~~~L~~eGI~vN~ 214 (374)
.+....+.+.+..+ -+|..-.+--++.+.+..++.++++.+. |+ ..|||=-..+=++.++.+.+.||.+|+
T Consensus 59 em~~~~~~I~r~~~~~pviaD~~~G~g~~~~~~~~~~~~l~~a----Ga----~gv~iED~~~~~~~i~ai~~a~i~Via 130 (240)
T cd06556 59 DVPYHVRAVRRGAPLALIVADLPFGAYGAPTAAFELAKTFMRA----GA----AGVKIEGGEWHIETLQMLTAAAVPVIA 130 (240)
T ss_pred HHHHHHHHHHhhCCCCCEEEeCCCCCCcCHHHHHHHHHHHHHc----CC----cEEEEcCcHHHHHHHHHHHHcCCeEEE
Confidence 44455567777776 4788888766666657788888888774 23 567876666667778888889999887
Q ss_pred eecCC-----------------------HHHHHHHHHcCCcEEE
Q 017271 215 TFVYS-----------------------FAQAAAAAQAGASVIQ 235 (374)
Q Consensus 215 TlIFS-----------------------~~QA~aaa~AGas~IS 235 (374)
-.=.. .+++.+..+|||..|=
T Consensus 131 Rtd~~pq~~~~~gg~~~~~~~~~~~~~ai~Ra~ay~~AGAd~i~ 174 (240)
T cd06556 131 HTGLTPQSVNTSGGDEGQYRGDEAGEQLIADALAYAPAGADLIV 174 (240)
T ss_pred EeCCchhhhhccCCceeeccCHHHHHHHHHHHHHHHHcCCCEEE
Confidence 64432 3445666688887553
No 153
>PRK06582 coproporphyrinogen III oxidase; Provisional
Probab=45.19 E-value=1.3e+02 Score=31.01 Aligned_cols=45 Identities=18% Similarity=0.198 Sum_probs=32.9
Q ss_pred hHHHHHHHHHHcCceeEEeecCCHH-H--------HHHHHHcCCcEEEechhhh
Q 017271 197 QGIEASRLLESEGIQTHLTFVYSFA-Q--------AAAAAQAGASVIQIFVGRL 241 (374)
Q Consensus 197 eGi~A~~~L~~eGI~vN~TlIFS~~-Q--------A~aaa~AGas~ISpFVGRI 241 (374)
+.++|++.+.+.+.++|+.+||.+. | ...+++.++.-||.|-=.+
T Consensus 148 ~~~~ai~~~~~~~~~v~~DlI~GlPgqt~e~~~~~l~~~~~l~p~his~y~L~i 201 (390)
T PRK06582 148 QAIKTIEAANTIFPRVSFDLIYARSGQTLKDWQEELKQAMQLATSHISLYQLTI 201 (390)
T ss_pred HHHHHHHHHHHhCCcEEEEeecCCCCCCHHHHHHHHHHHHhcCCCEEEEecCEE
Confidence 5688888887779999999999875 3 3335566887777774333
No 154
>PLN02979 glycolate oxidase
Probab=44.78 E-value=77 Score=32.76 Aligned_cols=105 Identities=21% Similarity=0.252 Sum_probs=70.6
Q ss_pred cCChhHHHHHHHHHHcCceeEEeecCCHHHHHHHHHcCCcEE--EechhhhhhhhhcCCCCccchhhhccCCCcHHHHHH
Q 017271 193 PSTWQGIEASRLLESEGIQTHLTFVYSFAQAAAAAQAGASVI--QIFVGRLRDWARNHSGDPEIDDALKRGEDPALSLVS 270 (374)
Q Consensus 193 PaT~eGi~A~~~L~~eGI~vN~TlIFS~~QA~aaa~AGas~I--SpFVGRIdd~~~~~~~d~~~~~~~~~~~d~Gv~~v~ 270 (374)
+.||+=|+-++... ++++-+--|.+.+.|..|.++|+..| |-.=||-.|+. -+.+...-
T Consensus 209 ~ltW~dl~wlr~~~--~~PvivKgV~~~~dA~~a~~~Gvd~I~VsnhGGrqld~~-----------------p~t~~~L~ 269 (366)
T PLN02979 209 TLSWKDVQWLQTIT--KLPILVKGVLTGEDARIAIQAGAAGIIVSNHGARQLDYV-----------------PATISALE 269 (366)
T ss_pred CCCHHHHHHHHhcc--CCCEEeecCCCHHHHHHHHhcCCCEEEECCCCcCCCCCc-----------------hhHHHHHH
Confidence 36897766666533 68888889999999999999998764 44444433221 02233444
Q ss_pred HHHHHHHHcCccHHHH-HhccCChhcHHH--hhCCcEecccHHHHHHHHhCC
Q 017271 271 KAYNYIHKYGHKSKLM-AAAVRNKQDLFS--LLGVDYIIAPLKVLQSLKESA 319 (374)
Q Consensus 271 ~iy~~~k~~g~~T~vL-aAS~Rn~~~i~~--laG~D~lTipp~ll~~L~~~~ 319 (374)
++.+ ..+.+..|+ --.+|+-.+++. .+|+|.+-+.-.++..+...+
T Consensus 270 ei~~---~~~~~~~Vi~dGGIr~G~Di~KALALGAdaV~iGrp~L~~la~~G 318 (366)
T PLN02979 270 EVVK---ATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVFSLAAEG 318 (366)
T ss_pred HHHH---HhCCCCeEEEeCCcCcHHHHHHHHHcCCCEEEEcHHHHHHHHhcC
Confidence 4433 333344455 466889999987 589999999988888776543
No 155
>COG0320 LipA Lipoate synthase [Coenzyme metabolism]
Probab=44.65 E-value=27 Score=34.89 Aligned_cols=134 Identities=21% Similarity=0.189 Sum_probs=74.9
Q ss_pred HHHHHHHHHc-CceeEEeecCCHHHHHHH-HHcCCcEEEechhhhhhhhhcCCCCccchhhhccCCCcHHHHHHHHHHHH
Q 017271 199 IEASRLLESE-GIQTHLTFVYSFAQAAAA-AQAGASVIQIFVGRLRDWARNHSGDPEIDDALKRGEDPALSLVSKAYNYI 276 (374)
Q Consensus 199 i~A~~~L~~e-GI~vN~TlIFS~~QA~aa-a~AGas~ISpFVGRIdd~~~~~~~d~~~~~~~~~~~d~Gv~~v~~iy~~~ 276 (374)
|++++++.-. .|-+..-=.-...+++.. +++|..+..--|--+...+.+-- . .....---.+.++.
T Consensus 139 i~~Ire~~P~t~iEvL~PDF~G~~~al~~v~~~~pdV~nHNvETVprL~~~VR----------p--~A~Y~~SL~~L~~~ 206 (306)
T COG0320 139 IRAIRELNPQTTIEVLTPDFRGNDDALEIVADAGPDVFNHNVETVPRLYPRVR----------P--GATYERSLSLLERA 206 (306)
T ss_pred HHHHHhhCCCceEEEeCccccCCHHHHHHHHhcCcchhhcccccchhcccccC----------C--CCcHHHHHHHHHHH
Confidence 7777777633 555544333444555543 46677766655554444432110 1 12345555566666
Q ss_pred HHcC----ccHHHHHhccCChhcHHH------hhCCcEecccHHHHHHHHhCCCCCcchhhhcccCChhhhccCCCCHHH
Q 017271 277 HKYG----HKSKLMAAAVRNKQDLFS------LLGVDYIIAPLKVLQSLKESAISPDEKYSFVRRLSPQSAAMYNFTEEE 346 (374)
Q Consensus 277 k~~g----~~T~vLaAS~Rn~~~i~~------laG~D~lTipp~ll~~L~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 346 (374)
|+.+ -|+-+|..=+-..++|.+ .+|||++||...+--....++- .+. .+.||
T Consensus 207 k~~~P~i~TKSgiMlGLGEt~~Ev~e~m~DLr~~gvdilTiGQYlqPS~~HlpV--------~ry----------v~Pee 268 (306)
T COG0320 207 KELGPDIPTKSGLMVGLGETDEEVIEVMDDLRSAGVDILTIGQYLQPSRKHLPV--------QRY----------VTPEE 268 (306)
T ss_pred HHhCCCcccccceeeecCCcHHHHHHHHHHHHHcCCCEEEeccccCCccccCCc--------eec----------cCHHH
Confidence 6654 244467666667777764 5899999998664333222222 222 34567
Q ss_pred hccccc----cccccCCccc
Q 017271 347 VCVFSN----FPFIHCPSSS 362 (374)
Q Consensus 347 ~~~~~~----~~~~~~~~~~ 362 (374)
++.|.+ +-|.|+.+.-
T Consensus 269 F~~~~~~a~~~GF~~v~sgP 288 (306)
T COG0320 269 FDELEEVAEEMGFLHVASGP 288 (306)
T ss_pred HHHHHHHHHHccchhhccCc
Confidence 777754 4588887654
No 156
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=44.42 E-value=1.4e+02 Score=28.54 Aligned_cols=71 Identities=15% Similarity=0.157 Sum_probs=45.3
Q ss_pred cCCHHHHHHHHHHHHHHhcCCCCCCCcEEEEecCC-----hhH----HHHHHHH---HHcCceeEEeecCCHHHHHHHHH
Q 017271 161 AYDTHGIIRKVHDLLKLYSEIDVPPERLLFKIPST-----WQG----IEASRLL---ESEGIQTHLTFVYSFAQAAAAAQ 228 (374)
Q Consensus 161 a~D~e~~I~eA~~L~~l~~~~gv~~~nVlIKIPaT-----~eG----i~A~~~L---~~eGI~vN~TlIFS~~QA~aaa~ 228 (374)
..+.+..++-++++.++ |+ +.|.| +-| ++- ++.+++- ..-|++++-|+=+.+.-+++|.+
T Consensus 137 ~~~~~~~~~~~~~~~~~----G~--d~i~l--~DT~G~~~P~~v~~lv~~l~~~~~~~~l~~H~Hn~~GlA~AN~laAi~ 208 (263)
T cd07943 137 MASPEELAEQAKLMESY----GA--DCVYV--TDSAGAMLPDDVRERVRALREALDPTPVGFHGHNNLGLAVANSLAAVE 208 (263)
T ss_pred CCCHHHHHHHHHHHHHc----CC--CEEEE--cCCCCCcCHHHHHHHHHHHHHhCCCceEEEEecCCcchHHHHHHHHHH
Confidence 35666666666666554 44 45554 433 332 3333332 12388999999999999999999
Q ss_pred cCCcEEEechh
Q 017271 229 AGASVIQIFVG 239 (374)
Q Consensus 229 AGas~ISpFVG 239 (374)
+|+.++--=++
T Consensus 209 aGa~~vd~s~~ 219 (263)
T cd07943 209 AGATRIDGSLA 219 (263)
T ss_pred hCCCEEEeecc
Confidence 99886654433
No 157
>PRK12822 phospho-2-dehydro-3-deoxyheptonate aldolase; Provisional
Probab=44.40 E-value=74 Score=32.77 Aligned_cols=76 Identities=17% Similarity=0.162 Sum_probs=54.8
Q ss_pred HHHhcCCCCeEEEEecCCccCCHHHHHHHHHHHHHHhcCCCCCCCcEEE------EecCC-------------------h
Q 017271 142 GDLAKMVPGRVSTEVDARLAYDTHGIIRKVHDLLKLYSEIDVPPERLLF------KIPST-------------------W 196 (374)
Q Consensus 142 ~eil~~v~G~VS~EVdp~la~D~e~~I~eA~~L~~l~~~~gv~~~nVlI------KIPaT-------------------~ 196 (374)
++|+.+.+.+.-+=|-|--.+|.+..++-|++|.++.++. +++++| -=|=| .
T Consensus 44 ~~Il~g~d~rllvIvGPCSIhd~~~aleyA~rLk~l~~~~---~d~l~ivmR~y~eKPRTs~gwkGl~~DP~ldgs~~i~ 120 (356)
T PRK12822 44 RNILLGKDPRLLVIIGPCSIHDPQAALEYAKRLAVLQHQY---LDQLYIVMRTYFEKPRTRKGWKGLIFDPDLDGSNDIE 120 (356)
T ss_pred HHHHcCCCCCeEEEEcCCcCCCHHHHHHHHHHHHHHHHhh---cccEEEEEEeccccCCCCCCccccccCCCCCCCccHH
Confidence 3777888889999999999999999999999999997652 122222 11444 4
Q ss_pred hHHHHHHHH---H-HcCceeEEeecCCHH
Q 017271 197 QGIEASRLL---E-SEGIQTHLTFVYSFA 221 (374)
Q Consensus 197 eGi~A~~~L---~-~eGI~vN~TlIFS~~ 221 (374)
+||+.+++| . +.|.++ +|-+..+.
T Consensus 121 ~GL~i~R~ll~~~~~~GlPv-atE~ld~~ 148 (356)
T PRK12822 121 KGLRLARQLLLSINTLGLAT-ATEFLDTT 148 (356)
T ss_pred HHHHHHHHHHHHHHHhCCCE-EEeecccc
Confidence 788888888 3 348888 45444443
No 158
>PRK07695 transcriptional regulator TenI; Provisional
Probab=44.13 E-value=43 Score=30.65 Aligned_cols=85 Identities=16% Similarity=0.129 Sum_probs=53.7
Q ss_pred CceeEEeecCCHHHHHHHHHcCCcEEEechhhhhhhhhcCCCCccchhhhccCCCcHHHHHHHHHHHHHHcCccHHHHHh
Q 017271 209 GIQTHLTFVYSFAQAAAAAQAGASVIQIFVGRLRDWARNHSGDPEIDDALKRGEDPALSLVSKAYNYIHKYGHKSKLMAA 288 (374)
Q Consensus 209 GI~vN~TlIFS~~QA~aaa~AGas~ISpFVGRIdd~~~~~~~d~~~~~~~~~~~d~Gv~~v~~iy~~~k~~g~~T~vLaA 288 (374)
+..+=+| +.+.+|+..+.++|+.|+. +|++..... +.+ . .-.|+..++++.+. .+..+++.
T Consensus 95 ~~~ig~s-~~s~e~a~~a~~~Gadyi~--~g~v~~t~~-k~~-------~---~~~g~~~l~~~~~~-----~~ipvia~ 155 (201)
T PRK07695 95 YLHVGYS-VHSLEEAIQAEKNGADYVV--YGHVFPTDC-KKG-------V---PARGLEELSDIARA-----LSIPVIAI 155 (201)
T ss_pred CCEEEEe-CCCHHHHHHHHHcCCCEEE--ECCCCCCCC-CCC-------C---CCCCHHHHHHHHHh-----CCCCEEEE
Confidence 5556555 7899999999999999983 444433110 000 0 11356666666442 24567777
Q ss_pred ccCChhcHHH--hhCCcEecccHHHH
Q 017271 289 AVRNKQDLFS--LLGVDYIIAPLKVL 312 (374)
Q Consensus 289 S~Rn~~~i~~--laG~D~lTipp~ll 312 (374)
..-+.+++-+ .+|+|.+.+.-.+.
T Consensus 156 GGI~~~~~~~~~~~Ga~gvav~s~i~ 181 (201)
T PRK07695 156 GGITPENTRDVLAAGVSGIAVMSGIF 181 (201)
T ss_pred cCCCHHHHHHHHHcCCCEEEEEHHHh
Confidence 7678877765 58999987766655
No 159
>PRK14017 galactonate dehydratase; Provisional
Probab=43.89 E-value=2.5e+02 Score=28.50 Aligned_cols=110 Identities=15% Similarity=0.081 Sum_probs=76.1
Q ss_pred HHhcCCCCeEEEEecCCccCCHHHHHHHHHHHHHHhcCCCCCCCcEEEEecCChhHHHHHHHHHHc-CceeEEe-ecCCH
Q 017271 143 DLAKMVPGRVSTEVDARLAYDTHGIIRKVHDLLKLYSEIDVPPERLLFKIPSTWQGIEASRLLESE-GIQTHLT-FVYSF 220 (374)
Q Consensus 143 eil~~v~G~VS~EVdp~la~D~e~~I~eA~~L~~l~~~~gv~~~nVlIKIPaT~eGi~A~~~L~~e-GI~vN~T-lIFS~ 220 (374)
.+.+.+...+.+=||++-+.+.++ |.++.+..+++|+ .+|-=|.-...+...++|.+. ++++.+- -++++
T Consensus 169 avr~~~g~~~~l~vDaN~~w~~~~----A~~~~~~l~~~~~----~~iEeP~~~~d~~~~~~L~~~~~~pIa~dEs~~~~ 240 (382)
T PRK14017 169 AVREAVGPEIGIGVDFHGRVHKPM----AKVLAKELEPYRP----MFIEEPVLPENAEALPEIAAQTSIPIATGERLFSR 240 (382)
T ss_pred HHHHHhCCCCeEEEECCCCCCHHH----HHHHHHhhcccCC----CeEECCCCcCCHHHHHHHHhcCCCCEEeCCccCCH
Confidence 444555446778889888888764 4444444333332 467767766667788888776 6776543 46899
Q ss_pred HHHHHHHHcC-CcEEEechhhhhhhhhcCCCCccchhhhccCCCcHHHHHHHHHHHHHHcCcc
Q 017271 221 AQAAAAAQAG-ASVIQIFVGRLRDWARNHSGDPEIDDALKRGEDPALSLVSKAYNYIHKYGHK 282 (374)
Q Consensus 221 ~QA~aaa~AG-as~ISpFVGRIdd~~~~~~~d~~~~~~~~~~~d~Gv~~v~~iy~~~k~~g~~ 282 (374)
.+.....+.| +.++.|=++|+ -|+..++++.++-+.+|.+
T Consensus 241 ~~~~~li~~~a~d~v~~d~~~~----------------------GGit~~~~ia~~A~~~gi~ 281 (382)
T PRK14017 241 WDFKRVLEAGGVDIIQPDLSHA----------------------GGITECRKIAAMAEAYDVA 281 (382)
T ss_pred HHHHHHHHcCCCCeEecCcccc----------------------CCHHHHHHHHHHHHHcCCe
Confidence 9999988887 67777766554 2788888888888888755
No 160
>cd03332 LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-binding domain. LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases. It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer.
Probab=43.73 E-value=61 Score=33.56 Aligned_cols=105 Identities=19% Similarity=0.252 Sum_probs=71.5
Q ss_pred cCChhHHHHHHHHHHcCceeEEeecCCHHHHHHHHHcCCcEEEe--chhhhhhhhhcCCCCccchhhhccCCCcHHHHHH
Q 017271 193 PSTWQGIEASRLLESEGIQTHLTFVYSFAQAAAAAQAGASVIQI--FVGRLRDWARNHSGDPEIDDALKRGEDPALSLVS 270 (374)
Q Consensus 193 PaT~eGi~A~~~L~~eGI~vN~TlIFS~~QA~aaa~AGas~ISp--FVGRIdd~~~~~~~d~~~~~~~~~~~d~Gv~~v~ 270 (374)
..||+=|+-++... ++++-+--|.+.+.|..|.++|+..|-+ -=||..|. .-+.+..+.
T Consensus 239 ~~tW~~i~~lr~~~--~~pvivKgV~~~~dA~~a~~~G~d~I~vsnhGGr~~d~-----------------~~~t~~~L~ 299 (383)
T cd03332 239 SLTWEDLAFLREWT--DLPIVLKGILHPDDARRAVEAGVDGVVVSNHGGRQVDG-----------------SIAALDALP 299 (383)
T ss_pred CCCHHHHHHHHHhc--CCCEEEecCCCHHHHHHHHHCCCCEEEEcCCCCcCCCC-----------------CcCHHHHHH
Confidence 35887766665533 7889899999999999999999875433 23332211 113455555
Q ss_pred HHHHHHHHcCccHHHH-HhccCChhcHHH--hhCCcEecccHHHHHHHHhCC
Q 017271 271 KAYNYIHKYGHKSKLM-AAAVRNKQDLFS--LLGVDYIIAPLKVLQSLKESA 319 (374)
Q Consensus 271 ~iy~~~k~~g~~T~vL-aAS~Rn~~~i~~--laG~D~lTipp~ll~~L~~~~ 319 (374)
++.+.+ +.+..|+ .-.+|+-.++.. .+|+|.+-+.-.++..+...+
T Consensus 300 ei~~~~---~~~~~vi~dGGIr~G~Dv~KALaLGA~~v~iGr~~l~~l~~~G 348 (383)
T cd03332 300 EIVEAV---GDRLTVLFDSGVRTGADIMKALALGAKAVLIGRPYAYGLALGG 348 (383)
T ss_pred HHHHHh---cCCCeEEEeCCcCcHHHHHHHHHcCCCEEEEcHHHHHHHHhcc
Confidence 555444 2234444 567899999987 589999999999998876543
No 161
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=43.73 E-value=1.9e+02 Score=28.30 Aligned_cols=113 Identities=14% Similarity=0.186 Sum_probs=65.1
Q ss_pred CCccCCHHHHHHHHHHHHHHhcCCCCCCCcEEEEec-CChhHHHHHHHHHHcC-----c-eeEEe-ecCCHHHHHHHHHc
Q 017271 158 ARLAYDTHGIIRKVHDLLKLYSEIDVPPERLLFKIP-STWQGIEASRLLESEG-----I-QTHLT-FVYSFAQAAAAAQA 229 (374)
Q Consensus 158 p~la~D~e~~I~eA~~L~~l~~~~gv~~~nVlIKIP-aT~eGi~A~~~L~~eG-----I-~vN~T-lIFS~~QA~aaa~A 229 (374)
|...+.+++-++=++.|.+ ++|| +.+=+=-| .+++=.++++++.+.+ + ++.+. ++=.......|.++
T Consensus 12 ~~~~~s~e~K~~i~~~L~~---~~Gv--~~IEvg~~~~s~~e~~av~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~A~~~ 86 (280)
T cd07945 12 SGVSFSPSEKLNIAKILLQ---ELKV--DRIEVASARVSEGEFEAVQKIIDWAAEEGLLDRIEVLGFVDGDKSVDWIKSA 86 (280)
T ss_pred CCCccCHHHHHHHHHHHHH---HhCC--CEEEecCCCCCHHHHHHHHHHHHHhhhhccccCcEEEEecCcHHHHHHHHHC
Confidence 3456677777776666532 2355 56666668 5665567777775421 1 12232 33344456667788
Q ss_pred CCcEEEechhhhhhhhhcCCCCccchhhhccCCCcHHHHHHHHHHHHHHcCccHH
Q 017271 230 GASVIQIFVGRLRDWARNHSGDPEIDDALKRGEDPALSLVSKAYNYIHKYGHKSK 284 (374)
Q Consensus 230 Gas~ISpFVGRIdd~~~~~~~d~~~~~~~~~~~d~Gv~~v~~iy~~~k~~g~~T~ 284 (374)
|+..|..|++==+.+..++.. ...+..++.++++.++.+++|.+..
T Consensus 87 g~~~i~i~~~~S~~h~~~~~~---------~t~~e~l~~~~~~i~~a~~~G~~v~ 132 (280)
T cd07945 87 GAKVLNLLTKGSLKHCTEQLR---------KTPEEHFADIREVIEYAIKNGIEVN 132 (280)
T ss_pred CCCEEEEEEeCCHHHHHHHHC---------cCHHHHHHHHHHHHHHHHhCCCEEE
Confidence 999888887432222211111 1112467788888888898887543
No 162
>TIGR00078 nadC nicotinate-nucleotide pyrophosphorylase. Synonym: quinolinate phosphoribosyltransferase (decarboxylating)
Probab=43.03 E-value=47 Score=32.50 Aligned_cols=83 Identities=22% Similarity=0.225 Sum_probs=51.7
Q ss_pred hHHHHHHHHHHcCceeEEeecCCHHHHHHHHHcCCcEEEechhhhhhhhhcCCCCccchhhhccCCCcHHHHHHHHHHHH
Q 017271 197 QGIEASRLLESEGIQTHLTFVYSFAQAAAAAQAGASVIQIFVGRLRDWARNHSGDPEIDDALKRGEDPALSLVSKAYNYI 276 (374)
Q Consensus 197 eGi~A~~~L~~eGI~vN~TlIFS~~QA~aaa~AGas~ISpFVGRIdd~~~~~~~d~~~~~~~~~~~d~Gv~~v~~iy~~~ 276 (374)
.-++.++++...+..+=+ -+-+++|+..|.++|++||.. +. .+...++++.+.+
T Consensus 166 ~av~~~r~~~~~~~~Igv-ev~t~eea~~A~~~gaDyI~l-----d~--------------------~~~e~lk~~v~~~ 219 (265)
T TIGR00078 166 KAVKRARAAAPFALKIEV-EVESLEEAEEAAEAGADIIML-----DN--------------------MKPEEIKEAVQLL 219 (265)
T ss_pred HHHHHHHHhCCCCCeEEE-EeCCHHHHHHHHHcCCCEEEE-----CC--------------------CCHHHHHHHHHHh
Confidence 346666665443333322 335999999999999998865 10 1234455555544
Q ss_pred HHcCccHHHHHhccCChhcHHH--hhCCcEeccc
Q 017271 277 HKYGHKSKLMAAAVRNKQDLFS--LLGVDYIIAP 308 (374)
Q Consensus 277 k~~g~~T~vLaAS~Rn~~~i~~--laG~D~lTip 308 (374)
+.. ..+.+...-+.+++.+ .+|+|.+.+.
T Consensus 220 ~~~---ipi~AsGGI~~~ni~~~a~~Gvd~Isvg 250 (265)
T TIGR00078 220 KGR---VLLEASGGITLDNLEEYAETGVDVISSG 250 (265)
T ss_pred cCC---CcEEEECCCCHHHHHHHHHcCCCEEEeC
Confidence 322 3344555678888877 5899999764
No 163
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=43.02 E-value=3.5e+02 Score=26.96 Aligned_cols=128 Identities=15% Similarity=0.156 Sum_probs=70.7
Q ss_pred hHHHHHHHHhcCCCCeEEEEecCCccCCHHHHHHHHHHHH----HHhc---CCCCCCCcEEEEecC--------ChhHHH
Q 017271 136 ALVNVGGDLAKMVPGRVSTEVDARLAYDTHGIIRKVHDLL----KLYS---EIDVPPERLLFKIPS--------TWQGIE 200 (374)
Q Consensus 136 ~~v~~g~eil~~v~G~VS~EVdp~la~D~e~~I~eA~~L~----~l~~---~~gv~~~nVlIKIPa--------T~eGi~ 200 (374)
.+.++.+.+.+.++-+|.+-+.|.+. |..++.+.+++.- .+.. ...++.++.-. +|. -+..++
T Consensus 150 ~~~eiv~~v~~~~~iPv~vKl~p~~~-~~~~~a~~l~~~Gadgi~~~nt~~~~~id~~~~~~-~~~~glSG~~~~~~al~ 227 (325)
T cd04739 150 RYLDILRAVKSAVTIPVAVKLSPFFS-ALAHMAKQLDAAGADGLVLFNRFYQPDIDLETLEV-VPNLLLSSPAEIRLPLR 227 (325)
T ss_pred HHHHHHHHHHhccCCCEEEEcCCCcc-CHHHHHHHHHHcCCCeEEEEcCcCCCCccccccce-ecCCCcCCccchhHHHH
Confidence 34455556666566689999888653 4554544433210 0000 00111111000 011 012356
Q ss_pred HHHHHHHc-CceeEEe-ecCCHHHHHHHHHcCCcEEEechhhhhhhhhcCCCCccchhhhccCCCcHHHHHHHHHHHHHH
Q 017271 201 ASRLLESE-GIQTHLT-FVYSFAQAAAAAQAGASVIQIFVGRLRDWARNHSGDPEIDDALKRGEDPALSLVSKAYNYIHK 278 (374)
Q Consensus 201 A~~~L~~e-GI~vN~T-lIFS~~QA~aaa~AGas~ISpFVGRIdd~~~~~~~d~~~~~~~~~~~d~Gv~~v~~iy~~~k~ 278 (374)
.++++.+. +|++-.. -|+|.+.|..+..+||+.+..+-+=+.+ |.+---...+++-+++++
T Consensus 228 ~v~~v~~~~~ipIig~GGI~s~~Da~e~l~aGA~~Vqv~ta~~~~-----------------gp~~~~~i~~~L~~~l~~ 290 (325)
T cd04739 228 WIAILSGRVKASLAASGGVHDAEDVVKYLLAGADVVMTTSALLRH-----------------GPDYIGTLLAGLEAWMEE 290 (325)
T ss_pred HHHHHHcccCCCEEEECCCCCHHHHHHHHHcCCCeeEEehhhhhc-----------------CchHHHHHHHHHHHHHHH
Confidence 66777654 6777644 5999999999999999999888444421 111123455666677888
Q ss_pred cCcc
Q 017271 279 YGHK 282 (374)
Q Consensus 279 ~g~~ 282 (374)
+|++
T Consensus 291 ~g~~ 294 (325)
T cd04739 291 HGYE 294 (325)
T ss_pred cCCC
Confidence 8876
No 164
>PRK05904 coproporphyrinogen III oxidase; Provisional
Probab=42.63 E-value=1.2e+02 Score=30.60 Aligned_cols=81 Identities=19% Similarity=0.272 Sum_probs=50.3
Q ss_pred eEEEEecCCccCCHHHHHHHHHHHHHHhcCCCCCCCcEEEEecCCh--------------hHHHHHHHHHHcCce-eEEe
Q 017271 151 RVSTEVDARLAYDTHGIIRKVHDLLKLYSEIDVPPERLLFKIPSTW--------------QGIEASRLLESEGIQ-THLT 215 (374)
Q Consensus 151 ~VS~EVdp~la~D~e~~I~eA~~L~~l~~~~gv~~~nVlIKIPaT~--------------eGi~A~~~L~~eGI~-vN~T 215 (374)
.+++|++|..-.+ + .+++.++.|+ .+|-|-|=+.. +-++|++.+.+.|+. +|+.
T Consensus 91 eitiE~nP~~lt~--e-------~l~~lk~~G~--nrisiGvQS~~d~vL~~l~R~~~~~~~~~ai~~lr~~G~~~v~~d 159 (353)
T PRK05904 91 EFTIECNPELITQ--S-------QINLLKKNKV--NRISLGVQSMNNNILKQLNRTHTIQDSKEAINLLHKNGIYNISCD 159 (353)
T ss_pred eEEEEeccCcCCH--H-------HHHHHHHcCC--CEEEEecccCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCcEEEE
Confidence 6888888864321 1 2222333445 45555554432 458899999999986 9999
Q ss_pred ecCCH-HHHH--------HHHHcCCcEEEechhhhh
Q 017271 216 FVYSF-AQAA--------AAAQAGASVIQIFVGRLR 242 (374)
Q Consensus 216 lIFS~-~QA~--------aaa~AGas~ISpFVGRId 242 (374)
+||.+ .|-. .+.+.|+..++.|-=.+.
T Consensus 160 lI~GlPgqt~e~~~~tl~~~~~l~p~~is~y~L~~~ 195 (353)
T PRK05904 160 FLYCLPILKLKDLDEVFNFILKHKINHISFYSLEIK 195 (353)
T ss_pred EeecCCCCCHHHHHHHHHHHHhcCCCEEEEEeeEec
Confidence 99973 2222 233558888888765553
No 165
>TIGR00538 hemN oxygen-independent coproporphyrinogen III oxidase. This model represents HemN, the oxygen-independent coproporphyrinogen III oxidase that replaces HemF function under anaerobic conditions. Several species, including E. coli, Helicobacter pylori, and Aquifex aeolicus, have both a member of this family and a member of another, closely related family for which there is no evidence of coproporphyrinogen III oxidase activity. Members of this family have a perfectly conserved motif PYRT[SC]YP in a region N-terminal to the region of homology with the related uncharacterized protein.
Probab=42.30 E-value=96 Score=32.29 Aligned_cols=76 Identities=18% Similarity=0.337 Sum_probs=48.2
Q ss_pred eEEEEecCCccCCHHHHHHHHHHHHHHhcCCCCCCCcEEEEecCCh--------------hHHHHHHHHHHcCce-eEEe
Q 017271 151 RVSTEVDARLAYDTHGIIRKVHDLLKLYSEIDVPPERLLFKIPSTW--------------QGIEASRLLESEGIQ-THLT 215 (374)
Q Consensus 151 ~VS~EVdp~la~D~e~~I~eA~~L~~l~~~~gv~~~nVlIKIPaT~--------------eGi~A~~~L~~eGI~-vN~T 215 (374)
.+++|++|..- | ++.++. .++.|+ .+|.|-|=+.. .-++|++.|.+.|+. +|+.
T Consensus 139 eitie~np~~l-~-~e~l~~-------lk~~G~--~risiGvqS~~~~~l~~l~r~~~~~~~~~ai~~l~~~G~~~v~~d 207 (455)
T TIGR00538 139 EISIEIDPRYI-T-KDVIDA-------LRDEGF--NRLSFGVQDFNKEVQQAVNRIQPEEMIFELMNHAREAGFTSINID 207 (455)
T ss_pred eEEEEeccCcC-C-HHHHHH-------HHHcCC--CEEEEcCCCCCHHHHHHhCCCCCHHHHHHHHHHHHhcCCCcEEEe
Confidence 69999988643 2 222222 233345 56666655443 347899999999995 9999
Q ss_pred ecCCH-HHHH--------HHHHcCCcEEEec
Q 017271 216 FVYSF-AQAA--------AAAQAGASVIQIF 237 (374)
Q Consensus 216 lIFS~-~QA~--------aaa~AGas~ISpF 237 (374)
++|.+ .|-. .+.+.|+.-|+.|
T Consensus 208 li~GlPgqt~e~~~~tl~~~~~l~~~~is~y 238 (455)
T TIGR00538 208 LIYGLPKQTKESFAKTLEKVAELNPDRLAVF 238 (455)
T ss_pred EEeeCCCCCHHHHHHHHHHHHhcCCCEEEEe
Confidence 99983 2322 2345588777776
No 166
>PRK10060 RNase II stability modulator; Provisional
Probab=42.29 E-value=4.1e+02 Score=28.97 Aligned_cols=136 Identities=17% Similarity=0.116 Sum_probs=81.1
Q ss_pred CCeEEEEecCCccCCHHHHHHHHHHHHHHhcCCCCCCCcEEEEecCCh------hHHHHHHHHHHcCceeEEeecCCHHH
Q 017271 149 PGRVSTEVDARLAYDTHGIIRKVHDLLKLYSEIDVPPERLLFKIPSTW------QGIEASRLLESEGIQTHLTFVYSFAQ 222 (374)
Q Consensus 149 ~G~VS~EVdp~la~D~e~~I~eA~~L~~l~~~~gv~~~nVlIKIPaT~------eGi~A~~~L~~eGI~vN~TlIFS~~Q 222 (374)
+-+|++-++++--.|. ..++. +.+..++.++++.+++|-|+-+. .-.+.++.|.+.|+++-+-=.-+-.-
T Consensus 492 ~~~i~vNls~~~l~~~-~~~~~---l~~~l~~~~~~~~~l~lEitE~~~~~~~~~~~~~l~~L~~~G~~ialDdfGtg~s 567 (663)
T PRK10060 492 NLRVAVNVSARQLADQ-TIFTA---LKQALQELNFEYCPIDVELTESCLIENEELALSVIQQFSQLGAQVHLDDFGTGYS 567 (663)
T ss_pred CeEEEEEcCHHHhCCC-cHHHH---HHHHHHHHCcCcceEEEEECCchhhcCHHHHHHHHHHHHHCCCEEEEECCCCchh
Confidence 3468888887643332 23333 44455566889999999999873 34677899999999996643211111
Q ss_pred HHHHH-HcCCcEEEechhhhhhhhhcCCCCccchhhhccCCCcHHHHHHHHHHHHHHcCccHHHHHhccCChhcHHH--h
Q 017271 223 AAAAA-QAGASVIQIFVGRLRDWARNHSGDPEIDDALKRGEDPALSLVSKAYNYIHKYGHKSKLMAAAVRNKQDLFS--L 299 (374)
Q Consensus 223 A~aaa-~AGas~ISpFVGRIdd~~~~~~~d~~~~~~~~~~~d~Gv~~v~~iy~~~k~~g~~T~vLaAS~Rn~~~i~~--l 299 (374)
..... .-.+++|=.=-+-+.+.. ........++.+..+.+..| .++++-.+-+.++... .
T Consensus 568 sl~~L~~l~~d~iKiD~sfv~~i~---------------~~~~~~~~v~~ii~~a~~lg--~~viAeGVEt~~q~~~l~~ 630 (663)
T PRK10060 568 SLSQLARFPIDAIKLDQSFVRDIH---------------KQPVSQSLVRAIVAVAQALN--LQVIAEGVETAKEDAFLTK 630 (663)
T ss_pred hHHHHHhCCCCEEEECHHHHhccc---------------cCcchHHHHHHHHHHHHHCC--CcEEEecCCCHHHHHHHHH
Confidence 11111 112333322111111100 01235667888888888876 4578888888888765 5
Q ss_pred hCCcEe
Q 017271 300 LGVDYI 305 (374)
Q Consensus 300 aG~D~l 305 (374)
+|||++
T Consensus 631 ~G~d~~ 636 (663)
T PRK10060 631 NGVNER 636 (663)
T ss_pred cCCCEE
Confidence 899985
No 167
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.
Probab=41.64 E-value=3.9e+02 Score=27.55 Aligned_cols=102 Identities=17% Similarity=0.205 Sum_probs=63.9
Q ss_pred HHHHcCceeEEeecCCHHHHHHHHHcCCcEEEechhhhhhhhhcCCCCccchhhhccCCCc---HHHHHHHHH-HHHHHc
Q 017271 204 LLESEGIQTHLTFVYSFAQAAAAAQAGASVIQIFVGRLRDWARNHSGDPEIDDALKRGEDP---ALSLVSKAY-NYIHKY 279 (374)
Q Consensus 204 ~L~~eGI~vN~TlIFS~~QA~aaa~AGas~ISpFVGRIdd~~~~~~~d~~~~~~~~~~~d~---Gv~~v~~iy-~~~k~~ 279 (374)
...+.+|++-+--|+|.+.|..+.++|+..|- +||--... ... .+..+ -| .+.-+.++. +|+++.
T Consensus 183 ~i~~~~IPVI~G~V~t~e~A~~~~~aGaDgV~--~G~gg~~~----~~~----~lg~~-~p~~~ai~d~~~a~~~~~~e~ 251 (369)
T TIGR01304 183 FIGELDVPVIAGGVNDYTTALHLMRTGAAGVI--VGPGGANT----TRL----VLGIE-VPMATAIADVAAARRDYLDET 251 (369)
T ss_pred HHHHCCCCEEEeCCCCHHHHHHHHHcCCCEEE--ECCCCCcc----ccc----ccCCC-CCHHHHHHHHHHHHHHHHHhc
Confidence 33455899987779999999999999999887 66533211 000 00000 12 222233332 255555
Q ss_pred Cc-cHHHH-HhccCChhcHHH--hhCCcEecccHHHHHHHH
Q 017271 280 GH-KSKLM-AAAVRNKQDLFS--LLGVDYIIAPLKVLQSLK 316 (374)
Q Consensus 280 g~-~T~vL-aAS~Rn~~~i~~--laG~D~lTipp~ll~~L~ 316 (374)
|. ...|+ .-.+++..++.+ .+|+|.+.+.-.++..-.
T Consensus 252 g~r~vpVIAdGGI~tg~di~kAlAlGAdaV~iGt~~a~a~E 292 (369)
T TIGR01304 252 GGRYVHVIADGGIETSGDLVKAIACGADAVVLGSPLARAAE 292 (369)
T ss_pred CCCCceEEEeCCCCCHHHHHHHHHcCCCEeeeHHHHHhhhc
Confidence 52 23444 567889999987 589999999888777654
No 168
>cd01948 EAL EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2). The EAL domain has been shown to stimulate degradation of a second messenger, cyclic di-GMP, and is a good candidate for a diguanylate phosphodiesterase function. Together with the GGDEF domain, EAL might be involved in regulating cell surface adhesiveness in bacteria.
Probab=41.27 E-value=2.7e+02 Score=25.04 Aligned_cols=137 Identities=23% Similarity=0.318 Sum_probs=86.1
Q ss_pred CCCeEEEEecCCccCCHHHHHHHHHHHHHHhcCCCCCCCcEEEEecCChh------HHHHHHHHHHcCceeEEeecCCHH
Q 017271 148 VPGRVSTEVDARLAYDTHGIIRKVHDLLKLYSEIDVPPERLLFKIPSTWQ------GIEASRLLESEGIQTHLTFVYSFA 221 (374)
Q Consensus 148 v~G~VS~EVdp~la~D~e~~I~eA~~L~~l~~~~gv~~~nVlIKIPaT~e------Gi~A~~~L~~eGI~vN~TlIFS~~ 221 (374)
..+.+++-+++....+.+ .+ ..+..+.+..++++.+++|.|+...- =.+.++.|.+.|+++-+.=.-+-.
T Consensus 82 ~~~~l~ini~~~~l~~~~-~~---~~~~~~l~~~~~~~~~l~iei~e~~~~~~~~~~~~~~~~l~~~G~~l~ld~~g~~~ 157 (240)
T cd01948 82 PDLRLSVNLSARQLRDPD-FL---DRLLELLAETGLPPRRLVLEITESALIDDLEEALATLRRLRALGVRIALDDFGTGY 157 (240)
T ss_pred CCeEEEEECCHHHhCCcH-HH---HHHHHHHHHcCCCHHHEEEEEecchhhCCHHHHHHHHHHHHHCCCeEEEeCCCCcH
Confidence 456899999887655433 22 33555566677888899999998662 367889999999998775443333
Q ss_pred HHHH-HHHcCCcEEEechhhhhhhhhcCCCCccchhhhccCCCcHHHHHHHHHHHHHHcCccHHHHHhccCChhcHHH--
Q 017271 222 QAAA-AAQAGASVIQIFVGRLRDWARNHSGDPEIDDALKRGEDPALSLVSKAYNYIHKYGHKSKLMAAAVRNKQDLFS-- 298 (374)
Q Consensus 222 QA~a-aa~AGas~ISpFVGRIdd~~~~~~~d~~~~~~~~~~~d~Gv~~v~~iy~~~k~~g~~T~vLaAS~Rn~~~i~~-- 298 (374)
.-.. ..+..+.+|-.=-+-+.+.. .....-..++.+.++.+.+| .++++..+.+..+...
T Consensus 158 ~~~~~l~~~~~d~iKld~~~~~~~~---------------~~~~~~~~l~~l~~~~~~~~--~~via~gVe~~~~~~~~~ 220 (240)
T cd01948 158 SSLSYLKRLPVDYLKIDRSFVRDIE---------------TDPEDRAIVRAIIALAHSLG--LKVVAEGVETEEQLELLR 220 (240)
T ss_pred hhHHHHHhCCCCEEEECHHHHHhHh---------------cChhhHHHHHHHHHHHHHCC--CeEEEEecCCHHHHHHHH
Confidence 3222 23334555533222222211 00123455666666666654 6788888888888765
Q ss_pred hhCCcEe
Q 017271 299 LLGVDYI 305 (374)
Q Consensus 299 laG~D~l 305 (374)
..|+|++
T Consensus 221 ~~gi~~~ 227 (240)
T cd01948 221 ELGCDYV 227 (240)
T ss_pred HcCCCee
Confidence 6899876
No 169
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=41.01 E-value=62 Score=30.03 Aligned_cols=94 Identities=17% Similarity=0.201 Sum_probs=57.2
Q ss_pred HHHHHHHHHcC-ceeEEeecCCHHHHHHHHHcCCcEEEec-hhhhhhhhhcCCCCccchhhhccCCCcHHHHHHHHHHHH
Q 017271 199 IEASRLLESEG-IQTHLTFVYSFAQAAAAAQAGASVIQIF-VGRLRDWARNHSGDPEIDDALKRGEDPALSLVSKAYNYI 276 (374)
Q Consensus 199 i~A~~~L~~eG-I~vN~TlIFS~~QA~aaa~AGas~ISpF-VGRIdd~~~~~~~d~~~~~~~~~~~d~Gv~~v~~iy~~~ 276 (374)
-+.++.+.+.| +.+-+ -+.+++++..+.++|+.|+..+ .|+-..- . . ...+.+..++++.+..
T Consensus 112 ~~~i~~~~~~g~~~iiv-~v~t~~ea~~a~~~G~d~i~~~~~g~t~~~---~-~----------~~~~~~~~l~~i~~~~ 176 (219)
T cd04729 112 AELIKRIHEEYNCLLMA-DISTLEEALNAAKLGFDIIGTTLSGYTEET---A-K----------TEDPDFELLKELRKAL 176 (219)
T ss_pred HHHHHHHHHHhCCeEEE-ECCCHHHHHHHHHcCCCEEEccCccccccc---c-C----------CCCCCHHHHHHHHHhc
Confidence 34555666666 76644 5689999999999999999765 3432110 0 0 0113455555554332
Q ss_pred HHcCccHHHHHhc-cCChhcHHH--hhCCcEecccHHHH
Q 017271 277 HKYGHKSKLMAAA-VRNKQDLFS--LLGVDYIIAPLKVL 312 (374)
Q Consensus 277 k~~g~~T~vLaAS-~Rn~~~i~~--laG~D~lTipp~ll 312 (374)
+..+++.+ +++.+++.+ ..|+|.+-+.-.+.
T Consensus 177 -----~ipvia~GGI~~~~~~~~~l~~GadgV~vGsal~ 210 (219)
T cd04729 177 -----GIPVIAEGRINSPEQAAKALELGADAVVVGSAIT 210 (219)
T ss_pred -----CCCEEEeCCCCCHHHHHHHHHCCCCEEEEchHHh
Confidence 24455544 457788776 48999987775543
No 170
>cd07947 DRE_TIM_Re_CS Clostridium kluyveri Re-citrate synthase and related proteins, catalytic TIM barrel domain. Re-citrate synthase (Re-CS) is a Clostridium kluyveri enzyme that converts acetyl-CoA and oxaloacetate to citrate. In most organisms, this reaction is catalyzed by Si-citrate synthase which is Si-face stereospecific with respect to C-2 of oxaloacetate, and phylogenetically unrelated to Re-citrate synthase. Re-citrate synthase is also found in a few other strictly anaerobic organisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with
Probab=40.94 E-value=2.7e+02 Score=27.42 Aligned_cols=105 Identities=12% Similarity=0.014 Sum_probs=60.7
Q ss_pred CHHHHHHHHHHHHHHhcCCC-----CCCCcEEEEecCChhHHHHHHHHHHcCc---eeEEeecCCHHHHHHHHHcCCcEE
Q 017271 163 DTHGIIRKVHDLLKLYSEID-----VPPERLLFKIPSTWQGIEASRLLESEGI---QTHLTFVYSFAQAAAAAQAGASVI 234 (374)
Q Consensus 163 D~e~~I~eA~~L~~l~~~~g-----v~~~nVlIKIPaT~eGi~A~~~L~~eGI---~vN~TlIFS~~QA~aaa~AGas~I 234 (374)
++++-++=++.|.++ | + +.|=+ -+...+-.++++++.+.|. .+...+.-..+-...|.++|+..|
T Consensus 19 ~~~~Kv~i~~~L~~~----G~~~~~v--~~IE~-~s~~~~d~~~v~~~~~~~~~~~~v~~~~r~~~~die~A~~~g~~~v 91 (279)
T cd07947 19 TVEQIVKIYDYLHEL----GGGSGVI--RQTEF-FLYTEKDREAVEACLDRGYKFPEVTGWIRANKEDLKLVKEMGLKET 91 (279)
T ss_pred CHHHHHHHHHHHHHc----CCCCCcc--ceEEe-cCcChHHHHHHHHHHHcCCCCCEEEEEecCCHHHHHHHHHcCcCEE
Confidence 555555555555444 4 4 23333 2334455666666666543 344446666677777888898888
Q ss_pred EechhhhhhhhhcCCCCccchhhhccCCCcHHHHHHHHHHHHHHcCccH
Q 017271 235 QIFVGRLRDWARNHSGDPEIDDALKRGEDPALSLVSKAYNYIHKYGHKS 283 (374)
Q Consensus 235 SpFVGRIdd~~~~~~~d~~~~~~~~~~~d~Gv~~v~~iy~~~k~~g~~T 283 (374)
..|++==+-+..++.+ ...+.-++.++++.++.+.+|.+.
T Consensus 92 ~i~~s~S~~~~~~~~~---------~t~~e~l~~~~~~v~~a~~~g~~v 131 (279)
T cd07947 92 GILMSVSDYHIFKKLK---------MTREEAMEKYLEIVEEALDHGIKP 131 (279)
T ss_pred EEEEcCCHHHHHHHhC---------cCHHHHHHHHHHHHHHHHHCCCeE
Confidence 8887543333222211 111246778888888988887653
No 171
>PRK06801 hypothetical protein; Provisional
Probab=40.51 E-value=1.2e+02 Score=30.19 Aligned_cols=139 Identities=14% Similarity=0.119 Sum_probs=88.7
Q ss_pred CCeEEEEecCCccCCHHHHHHHHHHHHHHhcCCCCCCCcEEEEec---CChhHHHHHHHHHHcCceeEEeecCCHHHHHH
Q 017271 149 PGRVSTEVDARLAYDTHGIIRKVHDLLKLYSEIDVPPERLLFKIP---STWQGIEASRLLESEGIQTHLTFVYSFAQAAA 225 (374)
Q Consensus 149 ~G~VS~EVdp~la~D~e~~I~eA~~L~~l~~~~gv~~~nVlIKIP---aT~eGi~A~~~L~~eGI~vN~TlIFS~~QA~a 225 (374)
.|+=|+++|.. ..+.++.++..+++.++.+..|++ |-.-|= ....++ .... ......-.++||..
T Consensus 96 ~GftSVm~D~S-~l~~eeNi~~t~~v~~~a~~~gv~---VE~ElG~vgg~e~~v-----~~~~---~~~~~~T~pe~a~~ 163 (286)
T PRK06801 96 LGFSSVMFDGS-TLEYEENVRQTREVVKMCHAVGVS---VEAELGAVGGDEGGA-----LYGE---ADSAKFTDPQLARD 163 (286)
T ss_pred hCCcEEEEcCC-CCCHHHHHHHHHHHHHHHHHcCCe---EEeecCcccCCCCCc-----ccCC---cccccCCCHHHHHH
Confidence 48899999985 356789999999999999888773 222222 111111 0000 01223336699999
Q ss_pred HH-HcCCcEEEechhhhhhhhhcCCCCccchhhhccCCCcHHHHHHHHHHHHHHcCccHHHHHhccCChhcHHH--hhCC
Q 017271 226 AA-QAGASVIQIFVGRLRDWARNHSGDPEIDDALKRGEDPALSLVSKAYNYIHKYGHKSKLMAAAVRNKQDLFS--LLGV 302 (374)
Q Consensus 226 aa-~AGas~ISpFVGRIdd~~~~~~~d~~~~~~~~~~~d~Gv~~v~~iy~~~k~~g~~T~vLaAS~Rn~~~i~~--laG~ 302 (374)
.. +.|++++++=+|-..-.++. ....++...+++.+.. +.+.-+.+.|.-..+++.+ .+|+
T Consensus 164 f~~~tgvD~LAvaiGt~Hg~y~~-------------~~~l~~e~l~~i~~~~---~~PLVlHGGSgi~~e~~~~~i~~Gi 227 (286)
T PRK06801 164 FVDRTGIDALAVAIGNAHGKYKG-------------EPKLDFARLAAIHQQT---GLPLVLHGGSGISDADFRRAIELGI 227 (286)
T ss_pred HHHHHCcCEEEeccCCCCCCCCC-------------CCCCCHHHHHHHHHhc---CCCEEEECCCCCCHHHHHHHHHcCC
Confidence 88 67999999988887544321 1123666677665533 4555555788788888776 5888
Q ss_pred cEecccHHHHHHH
Q 017271 303 DYIIAPLKVLQSL 315 (374)
Q Consensus 303 D~lTipp~ll~~L 315 (374)
+-+-+.-.+...+
T Consensus 228 ~KINv~T~~~~a~ 240 (286)
T PRK06801 228 HKINFYTGMSQAA 240 (286)
T ss_pred cEEEehhHHHHHH
Confidence 8876665555544
No 172
>TIGR00539 hemN_rel putative oxygen-independent coproporphyrinogen III oxidase. Experimentally determined examples of oxygen-independent coproporphyrinogen III oxidase, an enzyme that replaces HemF function under anaerobic conditions, belong to a family of proteins described by the model hemN. This model, hemN_rel, models a closely related protein, shorter at the amino end and lacking the region containing the motif PYRT[SC]YP found in members of the hemN family. Several species, including E. coli, Helicobacter pylori, Aquifex aeolicus, and Chlamydia trachomatis, have members of both this family and the E. coli hemN family. The member of this family from Bacillus subtilis was shown to complement an hemF/hemN double mutant of Salmonella typimurium and to prevent accumulation of coproporphyrinogen III under anaerobic conditions, but the exact role of this protein is still uncertain. It is found in a number of species that do not synthesize heme de novo.
Probab=40.27 E-value=1.2e+02 Score=30.43 Aligned_cols=42 Identities=17% Similarity=0.210 Sum_probs=30.9
Q ss_pred hHHHHHHHHHHcCc-eeEEeecCCH-HHHHH--------HHHcCCcEEEech
Q 017271 197 QGIEASRLLESEGI-QTHLTFVYSF-AQAAA--------AAQAGASVIQIFV 238 (374)
Q Consensus 197 eGi~A~~~L~~eGI-~vN~TlIFS~-~QA~a--------aa~AGas~ISpFV 238 (374)
+-++|++.+.+.|+ ++|+.++|.+ .|-.. +.+.|+.-++.|.
T Consensus 137 ~~~~ai~~l~~~G~~~v~~dli~GlPgqt~~~~~~~l~~~~~l~~~~is~y~ 188 (360)
T TIGR00539 137 NIAPAIETALKSGIENISLDLMYGLPLQTLNSLKEELKLAKELPINHLSAYA 188 (360)
T ss_pred HHHHHHHHHHHcCCCeEEEeccCCCCCCCHHHHHHHHHHHHccCCCEEEeec
Confidence 45889999999999 5999999985 33322 4456887777665
No 173
>COG0854 PdxJ Pyridoxal phosphate biosynthesis protein [Coenzyme metabolism]
Probab=40.27 E-value=53 Score=31.91 Aligned_cols=88 Identities=25% Similarity=0.304 Sum_probs=64.2
Q ss_pred HhcCCCCeEEEEecCCccCCHHHHHHHHHHHHHHhcCCCCCCCcEEEEecC-----ChhH-----------HHHHHHHHH
Q 017271 144 LAKMVPGRVSTEVDARLAYDTHGIIRKVHDLLKLYSEIDVPPERLLFKIPS-----TWQG-----------IEASRLLES 207 (374)
Q Consensus 144 il~~v~G~VS~EVdp~la~D~e~~I~eA~~L~~l~~~~gv~~~nVlIKIPa-----T~eG-----------i~A~~~L~~ 207 (374)
+.+.++-++-+|..| +++|+.-|.+. +|.-+-=+|- |.+| -.++++|+.
T Consensus 58 lr~~~~~~~NlE~a~-----teEml~ia~~~----------kP~~vtLVPe~r~evTTegGlD~~~~~~~l~~~v~~L~~ 122 (243)
T COG0854 58 LRALIDTRFNLEMAP-----TEEMLAIALKT----------KPHQVTLVPEKREEVTTEGGLDVAGQLDKLRDAVRRLKN 122 (243)
T ss_pred HHHHcccceecccCc-----hHHHHHHHHhc----------CCCeEEeCCCchhhcccccchhhhhhhhhHHHHHHHHHh
Confidence 344455578888866 67774443322 2444444674 3333 357799999
Q ss_pred cCceeEEeecCCHHHHHHHHHcCCcEEEechhhhhhhhh
Q 017271 208 EGIQTHLTFVYSFAQAAAAAQAGASVIQIFVGRLRDWAR 246 (374)
Q Consensus 208 eGI~vN~TlIFS~~QA~aaa~AGas~ISpFVGRIdd~~~ 246 (374)
.||+|-+=.==.++|..+|++.|+.+|=.+-|+..+..+
T Consensus 123 ~GirVSLFiD~d~~qi~aa~~~gA~~IELhTG~Ya~~~~ 161 (243)
T COG0854 123 AGIRVSLFIDPDPEQIEAAAEVGAPRIELHTGPYADAHD 161 (243)
T ss_pred CCCeEEEEeCCCHHHHHHHHHhCCCEEEEecccccccCC
Confidence 999999888889999999999999999999999887653
No 174
>PRK09776 putative diguanylate cyclase; Provisional
Probab=40.08 E-value=6e+02 Score=28.80 Aligned_cols=135 Identities=16% Similarity=0.077 Sum_probs=81.3
Q ss_pred CCCeEEEEecCCccCCHHHHHHHHHHHHHHhcCCCCCCCcEEEEecCCh------hHHHHHHHHHHcCceeEEeec---C
Q 017271 148 VPGRVSTEVDARLAYDTHGIIRKVHDLLKLYSEIDVPPERLLFKIPSTW------QGIEASRLLESEGIQTHLTFV---Y 218 (374)
Q Consensus 148 v~G~VS~EVdp~la~D~e~~I~eA~~L~~l~~~~gv~~~nVlIKIPaT~------eGi~A~~~L~~eGI~vN~TlI---F 218 (374)
.+.++++-++|..-.+.+ .++. +.+..++.+++++++++-|.-+. +-.+.++.|.+.|+++-+-=. |
T Consensus 924 ~~~~~~iNis~~~l~~~~-~~~~---~~~~l~~~~~~~~~l~~Ei~e~~~~~~~~~~~~~~~~l~~~G~~~~lddfg~g~ 999 (1092)
T PRK09776 924 KGLSIALPLSVAGLSSPT-LLPF---LLEQLENSPLPPRLLHLEITETALLNHAESASRLVQKLRLAGCRVVLSDFGRGL 999 (1092)
T ss_pred CCcEEEEEcCHHHhCCch-HHHH---HHHHHHhcCCCHHHeEEEEecHHhhcCHHHHHHHHHHHHHCCcEEEEcCCCCCc
Confidence 345799999887443332 3343 44444557888999999999875 346778999999999966422 1
Q ss_pred CHHHHHHHHHcCCcEEEechhhhhhhhhcCCCCccchhhhccCCCcHHHHHHHHHHHHHHcCccHHHHHhccCChhcHHH
Q 017271 219 SFAQAAAAAQAGASVIQIFVGRLRDWARNHSGDPEIDDALKRGEDPALSLVSKAYNYIHKYGHKSKLMAAAVRNKQDLFS 298 (374)
Q Consensus 219 S~~QA~aaa~AGas~ISpFVGRIdd~~~~~~~d~~~~~~~~~~~d~Gv~~v~~iy~~~k~~g~~T~vLaAS~Rn~~~i~~ 298 (374)
+--.. -.+-.+++|=.=-+-+.+... ....-..++.+.++.+..| .++++-.+-+.+|...
T Consensus 1000 ~~~~~--l~~~~~d~iKid~~~~~~~~~---------------~~~~~~~~~~i~~~~~~~~--~~~iaegVEt~~~~~~ 1060 (1092)
T PRK09776 1000 SSFNY--LKAFMADYLKLDGELVANLHG---------------NLMDEMLISIIQGHAQRLG--MKTIAGPVELPLVLDT 1060 (1092)
T ss_pred hHHHH--HHhCCCCEEEECHHHHHhHhc---------------ChhhHHHHHHHHHHHHHcC--CcEEecccCCHHHHHH
Confidence 11111 112234444333222222110 0113455666777777765 5678888888887765
Q ss_pred --hhCCcEe
Q 017271 299 --LLGVDYI 305 (374)
Q Consensus 299 --laG~D~l 305 (374)
..|||++
T Consensus 1061 l~~~g~~~~ 1069 (1092)
T PRK09776 1061 LSGIGVDLA 1069 (1092)
T ss_pred HHHcCCCEE
Confidence 6999986
No 175
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=39.74 E-value=3.6e+02 Score=26.14 Aligned_cols=66 Identities=18% Similarity=0.119 Sum_probs=43.1
Q ss_pred HHHHHHHHHc-CceeEE-eecCCHHHHHHHHHcCCcEEEechhhhhhhhhcCCCCccchhhhccCCCcHHHHHHHHHHHH
Q 017271 199 IEASRLLESE-GIQTHL-TFVYSFAQAAAAAQAGASVIQIFVGRLRDWARNHSGDPEIDDALKRGEDPALSLVSKAYNYI 276 (374)
Q Consensus 199 i~A~~~L~~e-GI~vN~-TlIFS~~QA~aaa~AGas~ISpFVGRIdd~~~~~~~d~~~~~~~~~~~d~Gv~~v~~iy~~~ 276 (374)
++.++++.+. +|++-+ --|++.++|..+.++||+.|. +||-.-+ ++ +---...+.+.+++
T Consensus 223 l~~v~~i~~~~~ipvi~~GGI~s~~da~~~l~~GAd~V~--igr~~l~------~p----------~~~~~i~~~l~~~~ 284 (300)
T TIGR01037 223 LRMVYDVYKMVDIPIIGVGGITSFEDALEFLMAGASAVQ--VGTAVYY------RG----------FAFKKIIEGLIAFL 284 (300)
T ss_pred HHHHHHHHhcCCCCEEEECCCCCHHHHHHHHHcCCCcee--ecHHHhc------Cc----------hHHHHHHHHHHHHH
Confidence 4667777664 777764 568999999999999988776 4443210 00 11234455566677
Q ss_pred HHcCcc
Q 017271 277 HKYGHK 282 (374)
Q Consensus 277 k~~g~~ 282 (374)
+++|++
T Consensus 285 ~~~g~~ 290 (300)
T TIGR01037 285 KAEGFT 290 (300)
T ss_pred HHcCCC
Confidence 778876
No 176
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=39.51 E-value=2.9e+02 Score=24.87 Aligned_cols=114 Identities=9% Similarity=0.096 Sum_probs=64.8
Q ss_pred CcEEEEecCChhHHHHHHHHHHcCceeEEeec-CCHHHHHHHHHcCCcEEEechhhhhhhhhcCCCCccchhhhccCCCc
Q 017271 186 ERLLFKIPSTWQGIEASRLLESEGIQTHLTFV-YSFAQAAAAAQAGASVIQIFVGRLRDWARNHSGDPEIDDALKRGEDP 264 (374)
Q Consensus 186 ~nVlIKIPaT~eGi~A~~~L~~eGI~vN~TlI-FS~~QA~aaa~AGas~ISpFVGRIdd~~~~~~~d~~~~~~~~~~~d~ 264 (374)
+-|.+=.-.+.+=.+.++.+.+.|+..=+++- .+..+.+.....++.++- |.++ .. + ..++ .. ...
T Consensus 81 dgv~vh~~~~~~~~~~~~~~~~~g~~~~~~~~~~t~~e~~~~~~~~~d~i~-~~~~-~~-g--~tg~-----~~---~~~ 147 (210)
T TIGR01163 81 DIITVHPEASEHIHRLLQLIKDLGAKAGIVLNPATPLEFLEYVLPDVDLVL-LMSV-NP-G--FGGQ-----KF---IPD 147 (210)
T ss_pred CEEEEccCCchhHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHhhCCEEE-EEEE-cC-C--CCcc-----cc---cHH
Confidence 34444333344446777888888887655432 234555555555676653 2221 10 0 0000 00 123
Q ss_pred HHHHHHHHHHHHHHcCccHHHHHhccCChhcHHH--hhCCcEecccHHHH
Q 017271 265 ALSLVSKAYNYIHKYGHKSKLMAAAVRNKQDLFS--LLGVDYIIAPLKVL 312 (374)
Q Consensus 265 Gv~~v~~iy~~~k~~g~~T~vLaAS~Rn~~~i~~--laG~D~lTipp~ll 312 (374)
++..++++.++..+.+++..++++..-+.+++-+ ..|+|.+.+.-.++
T Consensus 148 ~~~~i~~i~~~~~~~~~~~~i~v~GGI~~env~~l~~~gad~iivgsai~ 197 (210)
T TIGR01163 148 TLEKIREVRKMIDENGLSILIEVDGGVNDDNARELAEAGADILVAGSAIF 197 (210)
T ss_pred HHHHHHHHHHHHHhcCCCceEEEECCcCHHHHHHHHHcCCCEEEEChHHh
Confidence 6666677766666554445566766677888866 48999998886665
No 177
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=38.72 E-value=80 Score=29.84 Aligned_cols=115 Identities=16% Similarity=0.232 Sum_probs=67.6
Q ss_pred HHHHHHHHHHHhcCCCCCCCcEEEEecCCh-----hHHHHHHHHHHcCceeEEeecCCHHHHHHHHHcCCcEEEechhhh
Q 017271 167 IIRKVHDLLKLYSEIDVPPERLLFKIPSTW-----QGIEASRLLESEGIQTHLTFVYSFAQAAAAAQAGASVIQIFVGRL 241 (374)
Q Consensus 167 ~I~eA~~L~~l~~~~gv~~~nVlIKIPaT~-----eGi~A~~~L~~eGI~vN~TlIFS~~QA~aaa~AGas~ISpFVGRI 241 (374)
++++++.|++..-++ |=+=+|. .--+-+++..+++ ..-+-=|-+++.++.|.++|+.+|+.=.+-.
T Consensus 53 T~~ev~~l~~aGadI--------IAlDaT~R~Rp~~l~~li~~i~~~~-~l~MADist~ee~~~A~~~G~D~I~TTLsGY 123 (192)
T PF04131_consen 53 TLKEVDALAEAGADI--------IALDATDRPRPETLEELIREIKEKY-QLVMADISTLEEAINAAELGFDIIGTTLSGY 123 (192)
T ss_dssp SHHHHHHHHHCT-SE--------EEEE-SSSS-SS-HHHHHHHHHHCT-SEEEEE-SSHHHHHHHHHTT-SEEE-TTTTS
T ss_pred CHHHHHHHHHcCCCE--------EEEecCCCCCCcCHHHHHHHHHHhC-cEEeeecCCHHHHHHHHHcCCCEEEcccccC
Confidence 457777777764322 2222332 2234456666778 6677788999999999999999999875543
Q ss_pred hhhhhcCCCCccchhhhccCCCcHHHHHHHHHHHHHHcCccHHHH-HhccCChhcHHH--hhCCcEecccHH
Q 017271 242 RDWARNHSGDPEIDDALKRGEDPALSLVSKAYNYIHKYGHKSKLM-AAAVRNKQDLFS--LLGVDYIIAPLK 310 (374)
Q Consensus 242 dd~~~~~~~d~~~~~~~~~~~d~Gv~~v~~iy~~~k~~g~~T~vL-aAS~Rn~~~i~~--laG~D~lTipp~ 310 (374)
-... .+..|-+.+++++.+ . +.+ |+ ---+.+++++.+ .+||+.+++.-.
T Consensus 124 T~~t--------------~~~~pD~~lv~~l~~---~-~~p--vIaEGri~tpe~a~~al~~GA~aVVVGsA 175 (192)
T PF04131_consen 124 TPYT--------------KGDGPDFELVRELVQ---A-DVP--VIAEGRIHTPEQAAKALELGAHAVVVGSA 175 (192)
T ss_dssp STTS--------------TTSSHHHHHHHHHHH---T-TSE--EEEESS--SHHHHHHHHHTT-SEEEE-HH
T ss_pred CCCC--------------CCCCCCHHHHHHHHh---C-CCc--EeecCCCCCHHHHHHHHhcCCeEEEECcc
Confidence 3211 123477888887654 2 323 33 344558888877 599999866543
No 178
>TIGR01502 B_methylAsp_ase methylaspartate ammonia-lyase. This model describes methylaspartate ammonia-lyase, also called beta-methylaspartase (EC 4.3.1.2). It follows methylaspartate mutase (composed of S and E subunits) in one of several possible pathways of glutamate fermentation.
Probab=38.35 E-value=4.1e+02 Score=27.76 Aligned_cols=104 Identities=15% Similarity=0.119 Sum_probs=76.0
Q ss_pred EEEEecCCc------cCCHHHHHHHHHHHHHHhcCCCCCCCcEEEEecCCh----hHHHHHHHHHHc------CceeEEe
Q 017271 152 VSTEVDARL------AYDTHGIIRKVHDLLKLYSEIDVPPERLLFKIPSTW----QGIEASRLLESE------GIQTHLT 215 (374)
Q Consensus 152 VS~EVdp~l------a~D~e~~I~eA~~L~~l~~~~gv~~~nVlIKIPaT~----eGi~A~~~L~~e------GI~vN~T 215 (374)
+.+-||.+= +.|.+++++-.+++.+.+..+ +++|-=|... +.++.+++|.+. ++++.+.
T Consensus 229 ~~l~vDaN~~~~~~~~~~~~~ai~~l~~l~~~~~~~-----~~~iEqPv~~~d~~~~~e~la~Lr~~~~~~~~~vPI~aD 303 (408)
T TIGR01502 229 PIFHIDVYGTIGEAFGVDIKAMADYIQTLAEAAKPF-----HLRIEGPMDVGSRQAQIEAMADLRAELDGRGVDAEIVAD 303 (408)
T ss_pred CeEEEEcCCCcccccCCCHHHHHHHHHHHHHhCccC-----CeEEecCCCCCcchhhHHHHHHHHHHhhcCCCCceEEec
Confidence 567777763 788888888777776643211 4678878754 347778888765 6666665
Q ss_pred e-cCCHHHHHHHHHcC-CcEEEechhhhhhhhhcCCCCccchhhhccCCCcHHHHHHHHHHHHHHcCcc
Q 017271 216 F-VYSFAQAAAAAQAG-ASVIQIFVGRLRDWARNHSGDPEIDDALKRGEDPALSLVSKAYNYIHKYGHK 282 (374)
Q Consensus 216 l-IFS~~QA~aaa~AG-as~ISpFVGRIdd~~~~~~~d~~~~~~~~~~~d~Gv~~v~~iy~~~k~~g~~ 282 (374)
- ++++.++....++| +.++.+=++|+ -|+..++++..+.+.+|.+
T Consensus 304 Es~~t~~d~~~~i~~~a~d~v~iK~~k~----------------------GGIt~a~kia~lA~~~Gi~ 350 (408)
T TIGR01502 304 EWCNTVEDVKFFTDAKAGHMVQIKTPDV----------------------GGVNNIARAIMYCKANGMG 350 (408)
T ss_pred CCCCCHHHHHHHHHhCCCCEEEeCcccc----------------------CCHHHHHHHHHHHHHcCCE
Confidence 4 57899999999887 57888877765 2899999999998888644
No 179
>PRK00915 2-isopropylmalate synthase; Validated
Probab=38.09 E-value=2.5e+02 Score=30.03 Aligned_cols=132 Identities=17% Similarity=0.144 Sum_probs=74.0
Q ss_pred ccCCHHHHHHHHHHHHHHhcCCCCCCCcEEEEecCCh-hHHHHHHHHHHcCceeEEeecC--CHHHHHHHH----HcCCc
Q 017271 160 LAYDTHGIIRKVHDLLKLYSEIDVPPERLLFKIPSTW-QGIEASRLLESEGIQTHLTFVY--SFAQAAAAA----QAGAS 232 (374)
Q Consensus 160 la~D~e~~I~eA~~L~~l~~~~gv~~~nVlIKIPaT~-eGi~A~~~L~~eGI~vN~TlIF--S~~QA~aaa----~AGas 232 (374)
..+++++.++-|+.|.++ || +.|=+=.|+.. .=.++++.+.+.+-++.+..+- ...-...+. ++|..
T Consensus 21 ~~~s~e~K~~ia~~L~~~----Gv--~~IE~G~p~~s~~d~~~v~~i~~~~~~~~i~a~~r~~~~did~a~~a~~~~~~~ 94 (513)
T PRK00915 21 ASLTVEEKLQIAKQLERL----GV--DVIEAGFPASSPGDFEAVKRIARTVKNSTVCGLARAVKKDIDAAAEALKPAEAP 94 (513)
T ss_pred CCCCHHHHHHHHHHHHHc----CC--CEEEEcCCCCChHHHHHHHHHHhhCCCCEEEEEccCCHHHHHHHHHHhhcCCCC
Confidence 456777777777777665 45 55666667654 3366677776554333333222 233333344 46788
Q ss_pred EEEechhhhhhhhhcCCCCccchhhhccCCCcHHHHHHHHHHHHHHcCccHHHHH--hccCChhcHHH------hhCCcE
Q 017271 233 VIQIFVGRLRDWARNHSGDPEIDDALKRGEDPALSLVSKAYNYIHKYGHKSKLMA--AAVRNKQDLFS------LLGVDY 304 (374)
Q Consensus 233 ~ISpFVGRIdd~~~~~~~d~~~~~~~~~~~d~Gv~~v~~iy~~~k~~g~~T~vLa--AS~Rn~~~i~~------laG~D~ 304 (374)
.|..|++=-+-+...+.+ ...+..+..+.++.+|.+++|.+...=. ++-.+.+.+.+ .+|+|.
T Consensus 95 ~v~i~~~~Sd~h~~~~l~---------~s~~e~l~~~~~~v~~ak~~g~~v~f~~ed~~r~d~~~l~~~~~~~~~~Ga~~ 165 (513)
T PRK00915 95 RIHTFIATSPIHMEYKLK---------MSREEVLEMAVEAVKYARSYTDDVEFSAEDATRTDLDFLCRVVEAAIDAGATT 165 (513)
T ss_pred EEEEEECCcHHHHHHHhC---------CCHHHHHHHHHHHHHHHHHCCCeEEEEeCCCCCCCHHHHHHHHHHHHHcCCCE
Confidence 888887654433322211 1112467888889999999887643211 33334443432 468777
Q ss_pred ec
Q 017271 305 II 306 (374)
Q Consensus 305 lT 306 (374)
+.
T Consensus 166 i~ 167 (513)
T PRK00915 166 IN 167 (513)
T ss_pred EE
Confidence 53
No 180
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=37.75 E-value=1.5e+02 Score=26.88 Aligned_cols=66 Identities=26% Similarity=0.225 Sum_probs=46.5
Q ss_pred CCHHHHHHHHHHHHHHhcCCCCCCCcEEEEecCChhHHHHHHHHHHc--CceeEEeecCCHHHHHHHHHcCCcEE
Q 017271 162 YDTHGIIRKVHDLLKLYSEIDVPPERLLFKIPSTWQGIEASRLLESE--GIQTHLTFVYSFAQAAAAAQAGASVI 234 (374)
Q Consensus 162 ~D~e~~I~eA~~L~~l~~~~gv~~~nVlIKIPaT~eGi~A~~~L~~e--GI~vN~TlIFS~~QA~aaa~AGas~I 234 (374)
.|.+..++.++.+.+- |+ ..|-|-. .+...++.++.+.++ .+.+.+..|.+..|+..|.++|+.++
T Consensus 13 ~~~~~~~~~~~~l~~~----G~--~~vev~~-~~~~~~~~i~~l~~~~~~~~iGag~v~~~~~~~~a~~~Ga~~i 80 (190)
T cd00452 13 DDAEDALALAEALIEG----GI--RAIEITL-RTPGALEAIRALRKEFPEALIGAGTVLTPEQADAAIAAGAQFI 80 (190)
T ss_pred CCHHHHHHHHHHHHHC----CC--CEEEEeC-CChhHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHHcCCCEE
Confidence 4566666666656553 45 3333332 144567788888776 38889999999999999999999866
No 181
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=37.66 E-value=1.4e+02 Score=27.59 Aligned_cols=108 Identities=11% Similarity=0.151 Sum_probs=62.9
Q ss_pred CcEEEEecCC-----hhHHHHHHHHHH-cCceeEEeecCCHHHHHHHHHcCCcEEEechhhhhhhhhcCCCCccchhhhc
Q 017271 186 ERLLFKIPST-----WQGIEASRLLES-EGIQTHLTFVYSFAQAAAAAQAGASVIQIFVGRLRDWARNHSGDPEIDDALK 259 (374)
Q Consensus 186 ~nVlIKIPaT-----~eGi~A~~~L~~-eGI~vN~TlIFS~~QA~aaa~AGas~ISpFVGRIdd~~~~~~~d~~~~~~~~ 259 (374)
+-|++=.|.. .+-.+.++.+.+ .|+.+-+ -+.+.+++..+.++|+.|+....+-... ... .
T Consensus 90 d~I~~d~~~~~~p~~~~~~~~i~~~~~~~~i~vi~-~v~t~ee~~~a~~~G~d~i~~~~~g~t~--~~~--~-------- 156 (221)
T PRK01130 90 DIIALDATLRPRPDGETLAELVKRIKEYPGQLLMA-DCSTLEEGLAAQKLGFDFIGTTLSGYTE--ETK--K-------- 156 (221)
T ss_pred CEEEEeCCCCCCCCCCCHHHHHHHHHhCCCCeEEE-eCCCHHHHHHHHHcCCCEEEcCCceeec--CCC--C--------
Confidence 4555545431 233455566666 7888754 4679999999999999999764321111 000 0
Q ss_pred cCCCcHHHHHHHHHHHHHHcCccHHHHHhc-cCChhcHHH--hhCCcEecccHHHH
Q 017271 260 RGEDPALSLVSKAYNYIHKYGHKSKLMAAA-VRNKQDLFS--LLGVDYIIAPLKVL 312 (374)
Q Consensus 260 ~~~d~Gv~~v~~iy~~~k~~g~~T~vLaAS-~Rn~~~i~~--laG~D~lTipp~ll 312 (374)
...++...++++.+.. +..+++++ +++.+++.+ ..|+|.+.+.-.+.
T Consensus 157 -~~~~~~~~i~~i~~~~-----~iPvia~GGI~t~~~~~~~l~~GadgV~iGsai~ 206 (221)
T PRK01130 157 -PEEPDFALLKELLKAV-----GCPVIAEGRINTPEQAKKALELGAHAVVVGGAIT 206 (221)
T ss_pred -CCCcCHHHHHHHHHhC-----CCCEEEECCCCCHHHHHHHHHCCCCEEEEchHhc
Confidence 0112355555554432 24455544 447888876 48999998875543
No 182
>TIGR00259 thylakoid_BtpA membrane complex biogenesis protein, BtpA family. Members of this family are found in C. elegans, Synechocystis sp., E. coli, and several of the Archaea. Members in Cyanobacteria have been shown to play a role in protein complex biogenesis, and designated BtpA (biogenesis of thylakoid protein). Homologs in non-photosynthetic species, where thylakoid intracytoplasmic membranes are lacking, are likely to act elsewhere in membrane protein biogenesis.
Probab=37.47 E-value=2.1e+02 Score=28.15 Aligned_cols=78 Identities=19% Similarity=0.247 Sum_probs=54.5
Q ss_pred cCCccCCHHHHHHHHHHHHHHhcCCCCCCCcEEEE----ecC----ChhHHHHHHHH----HHc-CceeEEeecC-CHHH
Q 017271 157 DARLAYDTHGIIRKVHDLLKLYSEIDVPPERLLFK----IPS----TWQGIEASRLL----ESE-GIQTHLTFVY-SFAQ 222 (374)
Q Consensus 157 dp~la~D~e~~I~eA~~L~~l~~~~gv~~~nVlIK----IPa----T~eGi~A~~~L----~~e-GI~vN~TlIF-S~~Q 222 (374)
+|++..+.+++++.|.+=.+.|++.|+| -|||- +|- -++-+.+|..+ ..+ ++++=+-++. ...+
T Consensus 16 sP~~~~~~~~i~e~A~~ea~~l~~~GvD--~viveN~~d~P~~~~~~p~tva~m~~i~~~v~~~~~~p~GvnvL~nd~~a 93 (257)
T TIGR00259 16 SPSFDDNLNAVIDKAWKDAMALEEGGVD--AVMFENFFDAPFLKEVDPETVAAMAVIAGQLKSDVSIPLGINVLRNDAVA 93 (257)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHhCCCC--EEEEecCCCCCCcCCCCHHHHHHHHHHHHHHHHhcCCCeeeeeecCCCHH
Confidence 7888889999999999999999999994 45542 333 33445555444 232 6666666677 6777
Q ss_pred HHHHHH-cCCcEEEe
Q 017271 223 AAAAAQ-AGASVIQI 236 (374)
Q Consensus 223 A~aaa~-AGas~ISp 236 (374)
+++.|. +|+.+|-.
T Consensus 94 al~iA~a~ga~FIRv 108 (257)
T TIGR00259 94 ALAIAMAVGAKFIRV 108 (257)
T ss_pred HHHHHHHhCCCEEEE
Confidence 777764 48988854
No 183
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=37.42 E-value=2.1e+02 Score=29.29 Aligned_cols=101 Identities=15% Similarity=0.112 Sum_probs=58.9
Q ss_pred hhHHHHHHHHhcCCCCeEEEEecCCcc--CCHHHHHHHHHHHHHHhcCCCCCCCcEEEEecC---ChhH-HHHHHHHHH-
Q 017271 135 KALVNVGGDLAKMVPGRVSTEVDARLA--YDTHGIIRKVHDLLKLYSEIDVPPERLLFKIPS---TWQG-IEASRLLES- 207 (374)
Q Consensus 135 ~~~v~~g~eil~~v~G~VS~EVdp~la--~D~e~~I~eA~~L~~l~~~~gv~~~nVlIKIPa---T~eG-i~A~~~L~~- 207 (374)
+..+..+++.-..+.|++|.......+ .|.+..++-++++.+. |+ ++|.|+=.. ++.- .+.++.|.+
T Consensus 165 ~~~v~~Ak~~Gl~v~~~is~~fg~p~~~r~~~~~l~~~~~~~~~~----Ga--d~I~l~DT~G~a~P~~v~~lv~~l~~~ 238 (347)
T PLN02746 165 REVALAAKKHSIPVRGYVSCVVGCPIEGPVPPSKVAYVAKELYDM----GC--YEISLGDTIGVGTPGTVVPMLEAVMAV 238 (347)
T ss_pred HHHHHHHHHcCCeEEEEEEeeecCCccCCCCHHHHHHHHHHHHHc----CC--CEEEecCCcCCcCHHHHHHHHHHHHHh
Confidence 344544444323345667766642222 3566666666666554 45 454444211 2222 222333322
Q ss_pred -----cCceeEEeecCCHHHHHHHHHcCCcEEEechhhh
Q 017271 208 -----EGIQTHLTFVYSFAQAAAAAQAGASVIQIFVGRL 241 (374)
Q Consensus 208 -----eGI~vN~TlIFS~~QA~aaa~AGas~ISpFVGRI 241 (374)
-+++++-|+=+.+.-+++|.++|+.++.-=++=|
T Consensus 239 ~~~~~i~~H~Hnd~GlA~AN~lAA~~aGa~~vd~sv~Gl 277 (347)
T PLN02746 239 VPVDKLAVHFHDTYGQALANILVSLQMGISTVDSSVAGL 277 (347)
T ss_pred CCCCeEEEEECCCCChHHHHHHHHHHhCCCEEEEecccc
Confidence 3688888888999999999999999887776655
No 184
>cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport. In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide.
Probab=37.27 E-value=1.1e+02 Score=30.06 Aligned_cols=83 Identities=23% Similarity=0.278 Sum_probs=50.0
Q ss_pred HHHHHHHHc--CceeEEeecCCHHHHHHHHHcCCcEEEechhhhhhhhhcCCCCccchhhhccCCCcHHHHHHHHHHHHH
Q 017271 200 EASRLLESE--GIQTHLTFVYSFAQAAAAAQAGASVIQIFVGRLRDWARNHSGDPEIDDALKRGEDPALSLVSKAYNYIH 277 (374)
Q Consensus 200 ~A~~~L~~e--GI~vN~TlIFS~~QA~aaa~AGas~ISpFVGRIdd~~~~~~~d~~~~~~~~~~~d~Gv~~v~~iy~~~k 277 (374)
+|++.+.+. +-.+ .--+.+++|+..|+++|++||-. +++. | ..++++.+.++
T Consensus 172 ~av~~~R~~~~~~~I-gVev~t~eea~~A~~~gaD~I~l--d~~~---------------------p--~~l~~~~~~~~ 225 (272)
T cd01573 172 KALARLRATAPEKKI-VVEVDSLEEALAAAEAGADILQL--DKFS---------------------P--EELAELVPKLR 225 (272)
T ss_pred HHHHHHHHhCCCCeE-EEEcCCHHHHHHHHHcCCCEEEE--CCCC---------------------H--HHHHHHHHHHh
Confidence 445444433 2334 45579999999999999998863 1211 0 11233333344
Q ss_pred HcCccHHHHHhccCChhcHHH--hhCCcEeccc
Q 017271 278 KYGHKSKLMAAAVRNKQDLFS--LLGVDYIIAP 308 (374)
Q Consensus 278 ~~g~~T~vLaAS~Rn~~~i~~--laG~D~lTip 308 (374)
+...+..+++...-+.+++.+ .+|+|.+.+.
T Consensus 226 ~~~~~i~i~AsGGI~~~ni~~~~~~Gvd~I~vs 258 (272)
T cd01573 226 SLAPPVLLAAAGGINIENAAAYAAAGADILVTS 258 (272)
T ss_pred ccCCCceEEEECCCCHHHHHHHHHcCCcEEEEC
Confidence 332345556666678888876 5899998444
No 185
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=36.52 E-value=1.9e+02 Score=27.13 Aligned_cols=67 Identities=18% Similarity=0.176 Sum_probs=45.9
Q ss_pred CCHHHHHHHHHHHHHHhcCCCCCCCcEEEEecC-ChhHHHHHHHHHHc-C--ceeEEeecCCHHHHHHHHHcCCcE-EEe
Q 017271 162 YDTHGIIRKVHDLLKLYSEIDVPPERLLFKIPS-TWQGIEASRLLESE-G--IQTHLTFVYSFAQAAAAAQAGASV-IQI 236 (374)
Q Consensus 162 ~D~e~~I~eA~~L~~l~~~~gv~~~nVlIKIPa-T~eGi~A~~~L~~e-G--I~vN~TlIFS~~QA~aaa~AGas~-ISp 236 (374)
.+.+..++.++.+++- |+ . +|-|.. |+.+.++++.|.++ + +.+=+-.|++.+|+..|.++|+.+ +||
T Consensus 19 ~~~~~~~~~~~a~~~g----Gi--~--~iEvt~~~~~~~~~i~~l~~~~~~~~~iGaGTV~~~~~~~~a~~aGA~fivsp 90 (206)
T PRK09140 19 ITPDEALAHVGALIEA----GF--R--AIEIPLNSPDPFDSIAALVKALGDRALIGAGTVLSPEQVDRLADAGGRLIVTP 90 (206)
T ss_pred CCHHHHHHHHHHHHHC----CC--C--EEEEeCCCccHHHHHHHHHHHcCCCcEEeEEecCCHHHHHHHHHcCCCEEECC
Confidence 4666666666666654 45 2 333333 33677888888765 4 566677799999999999999864 444
No 186
>cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=36.34 E-value=65 Score=31.51 Aligned_cols=81 Identities=20% Similarity=0.238 Sum_probs=50.2
Q ss_pred HHHHHHHHHHcCceeEEeecCCHHHHHHHHHcCCcEEEechhhhhhhhhcCCCCccchhhhccCCCcHHHHHHHHHHHHH
Q 017271 198 GIEASRLLESEGIQTHLTFVYSFAQAAAAAQAGASVIQIFVGRLRDWARNHSGDPEIDDALKRGEDPALSLVSKAYNYIH 277 (374)
Q Consensus 198 Gi~A~~~L~~eGI~vN~TlIFS~~QA~aaa~AGas~ISpFVGRIdd~~~~~~~d~~~~~~~~~~~d~Gv~~v~~iy~~~k 277 (374)
-++.++++...+..+ .--+-+++|+..|+++|++||.. +.+ +...++++.+..+
T Consensus 171 ~v~~~r~~~~~~~~I-gvev~s~eea~~A~~~gaDyI~l--d~~-----------------------~~e~l~~~~~~~~ 224 (268)
T cd01572 171 AVRRARAAAPFTLKI-EVEVETLEQLKEALEAGADIIML--DNM-----------------------SPEELREAVALLK 224 (268)
T ss_pred HHHHHHHhCCCCCeE-EEEECCHHHHHHHHHcCCCEEEE--CCc-----------------------CHHHHHHHHHHcC
Confidence 355555554333333 33446999999999999999875 111 2334444444332
Q ss_pred HcCccHHHHHhccCChhcHHH--hhCCcEecc
Q 017271 278 KYGHKSKLMAAAVRNKQDLFS--LLGVDYIIA 307 (374)
Q Consensus 278 ~~g~~T~vLaAS~Rn~~~i~~--laG~D~lTi 307 (374)
. +..+.+...-|.+++.+ .+|+|.+.+
T Consensus 225 ~---~ipi~AiGGI~~~ni~~~a~~Gvd~Iav 253 (268)
T cd01572 225 G---RVLLEASGGITLENIRAYAETGVDYISV 253 (268)
T ss_pred C---CCcEEEECCCCHHHHHHHHHcCCCEEEE
Confidence 2 34455666778888866 689999844
No 187
>TIGR00034 aroFGH phospho-2-dehydro-3-deoxyheptonate aldolase.
Probab=36.26 E-value=1.6e+02 Score=30.32 Aligned_cols=80 Identities=19% Similarity=0.197 Sum_probs=56.9
Q ss_pred HHHhcCCCCeEEEEecCCccCCHHHHHHHHHHHHHHhcCCCCC---CCcEEEEecCC-------------------hhHH
Q 017271 142 GDLAKMVPGRVSTEVDARLAYDTHGIIRKVHDLLKLYSEIDVP---PERLLFKIPST-------------------WQGI 199 (374)
Q Consensus 142 ~eil~~v~G~VS~EVdp~la~D~e~~I~eA~~L~~l~~~~gv~---~~nVlIKIPaT-------------------~eGi 199 (374)
+.|+.+.+.+.-+=|-|--.+|.++.++-|++|.++..++.-. --|+.+-=|=| .+||
T Consensus 39 ~~Il~g~d~rllvIvGPCSIhd~~~a~eyA~rLk~l~~~~~d~l~ivmR~y~eKPRTt~GWKGli~DP~ld~sf~i~~GL 118 (344)
T TIGR00034 39 ADIIAGKDDRLLVVIGPCSIHDPEAAIEYATRLKALREELKDDLEIVMRVYFEKPRTTVGWKGLINDPDLNGSFRINHGL 118 (344)
T ss_pred HHHhcCCCCCeEEEecCCCCCCHHHHHHHHHHHHHHHHhhhcceEEEEEeccccCCCccccccccCCCCcCCCCCHHHHH
Confidence 4778888889999999999999999999999999997642000 01111222433 3899
Q ss_pred HHHHHH----HHcCceeEEeecCCHHH
Q 017271 200 EASRLL----ESEGIQTHLTFVYSFAQ 222 (374)
Q Consensus 200 ~A~~~L----~~eGI~vN~TlIFS~~Q 222 (374)
+.+++| .+.|+++ +|-+..+.+
T Consensus 119 ~~~R~ll~~i~~~GlPv-atE~ld~~~ 144 (344)
T TIGR00034 119 RIARKLLLDLVNLGLPI-AGEFLDMIS 144 (344)
T ss_pred HHHHHHHHHHHHhCCCe-EEEecCcCc
Confidence 999999 4669998 666655443
No 188
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=36.24 E-value=3.2e+02 Score=29.97 Aligned_cols=60 Identities=13% Similarity=0.040 Sum_probs=37.0
Q ss_pred HHHHhcCCCCCCCcEEEEecCCh--hHHHHHHHHHHcCceeEEeecC--CH--------HHHHHHHHcCCcEEE
Q 017271 174 LLKLYSEIDVPPERLLFKIPSTW--QGIEASRLLESEGIQTHLTFVY--SF--------AQAAAAAQAGASVIQ 235 (374)
Q Consensus 174 L~~l~~~~gv~~~nVlIKIPaT~--eGi~A~~~L~~eGI~vN~TlIF--S~--------~QA~aaa~AGas~IS 235 (374)
.++...+.|++.=||.. +.++ .-..+++...+.|..+-+++.| ++ +-+..+.++|+..|.
T Consensus 102 ~v~~a~~~Gid~~rifd--~lnd~~~~~~ai~~ak~~G~~~~~~i~yt~~p~~~~~~~~~~a~~l~~~Gad~i~ 173 (593)
T PRK14040 102 FVERAVKNGMDVFRVFD--AMNDPRNLETALKAVRKVGAHAQGTLSYTTSPVHTLQTWVDLAKQLEDMGVDSLC 173 (593)
T ss_pred HHHHHHhcCCCEEEEee--eCCcHHHHHHHHHHHHHcCCeEEEEEEEeeCCccCHHHHHHHHHHHHHcCCCEEE
Confidence 44555566776555554 4444 4456777777889887777666 44 334445567876554
No 189
>TIGR00612 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase. Chlamydial members of the family have a long insert. The family is largely restricted to Bacteria, where it is widely but not universally distributed. No homology can be detected between the GcpE family and other proteins.
Probab=36.18 E-value=3.7e+02 Score=27.70 Aligned_cols=146 Identities=14% Similarity=0.212 Sum_probs=84.9
Q ss_pred eEEEEecCC-ccCCHHHHHHHHHHHHHHhcCCCCCCCcEEEEecCChhHHHHHHHHHHc-CceeEEeecCCHHHHHHHHH
Q 017271 151 RVSTEVDAR-LAYDTHGIIRKVHDLLKLYSEIDVPPERLLFKIPSTWQGIEASRLLESE-GIQTHLTFVYSFAQAAAAAQ 228 (374)
Q Consensus 151 ~VS~EVdp~-la~D~e~~I~eA~~L~~l~~~~gv~~~nVlIKIPaT~eGi~A~~~L~~e-GI~vN~TlIFS~~QA~aaa~ 228 (374)
+|++|-.-. --.|.+++++|.++|.+..- +=|-+-+|. .+-.+|++++.+. .|++-+-.=|....|+.|++
T Consensus 19 PI~VQSMtnt~T~Dv~atv~QI~~L~~aGc------eiVRvavp~-~~~A~al~~I~~~~~iPlVADIHFd~~lAl~a~~ 91 (346)
T TIGR00612 19 PIVVQSMTNTDTIDIDSTVAQIRALEEAGC------DIVRVTVPD-RESAAAFEAIKEGTNVPLVADIHFDYRLAALAMA 91 (346)
T ss_pred cEEEEecCCCCchhHHHHHHHHHHHHHcCC------CEEEEcCCC-HHHHHhHHHHHhCCCCCEEEeeCCCcHHHHHHHH
Confidence 888885322 34689999999888877642 445566663 3445556666554 68888888999999999999
Q ss_pred cCCcEEEechhhhhhhhhcCCCCccchhhhccC--CCcHHHHHHHHHHHHHHcCc-cHHHHHhccCChhcHHHhhCCcEe
Q 017271 229 AGASVIQIFVGRLRDWARNHSGDPEIDDALKRG--EDPALSLVSKAYNYIHKYGH-KSKLMAAAVRNKQDLFSLLGVDYI 305 (374)
Q Consensus 229 AGas~ISpFVGRIdd~~~~~~~d~~~~~~~~~~--~d~Gv~~v~~iy~~~k~~g~-~T~vLaAS~Rn~~~i~~laG~D~l 305 (374)
+|+.=+=.-=|-|-+.-+= ..-++.+-..+ -+-|+..=..-.+++++||. ..+-|..|--.--++++..|-+-+
T Consensus 92 ~g~dkiRINPGNig~~e~v---~~vv~~ak~~~ipIRIGVN~GSL~~~~~~kyg~~t~eamveSAl~~v~~le~~~F~di 168 (346)
T TIGR00612 92 KGVAKVRINPGNIGFRERV---RDVVEKARDHGKAMRIGVNHGSLERRLLEKYGDATAEAMVQSALEEAAILEKLGFRNV 168 (346)
T ss_pred hccCeEEECCCCCCCHHHH---HHHHHHHHHCCCCEEEecCCCCCcHHHHHHcCCCCHHHHHHHHHHHHHHHHHCCCCcE
Confidence 9987666555554331000 00000000000 01122111111356677774 456777666555567777775544
Q ss_pred c
Q 017271 306 I 306 (374)
Q Consensus 306 T 306 (374)
.
T Consensus 169 v 169 (346)
T TIGR00612 169 V 169 (346)
T ss_pred E
Confidence 3
No 190
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=36.15 E-value=1.5e+02 Score=28.80 Aligned_cols=74 Identities=20% Similarity=0.187 Sum_probs=46.5
Q ss_pred CCHHHHHHHHHHHHHHhcCCCCCCCcEEEEecC---ChhH-HHHHHHHHH-----cCceeEEeecCCHHHHHHHHHcCCc
Q 017271 162 YDTHGIIRKVHDLLKLYSEIDVPPERLLFKIPS---TWQG-IEASRLLES-----EGIQTHLTFVYSFAQAAAAAQAGAS 232 (374)
Q Consensus 162 ~D~e~~I~eA~~L~~l~~~~gv~~~nVlIKIPa---T~eG-i~A~~~L~~-----eGI~vN~TlIFS~~QA~aaa~AGas 232 (374)
.|.+..++.++++.+. |+ ++|.|+=.. |++- .+-++.|.+ -|++++=|+=+.+.-+++|+++|+.
T Consensus 146 ~~~~~~~~~~~~~~~~----Ga--~~i~l~DT~G~~~P~~v~~lv~~l~~~~~~~l~~H~Hnd~GlA~aN~laA~~aGa~ 219 (275)
T cd07937 146 HTLEYYVKLAKELEDM----GA--DSICIKDMAGLLTPYAAYELVKALKKEVGLPIHLHTHDTSGLAVATYLAAAEAGVD 219 (275)
T ss_pred CCHHHHHHHHHHHHHc----CC--CEEEEcCCCCCCCHHHHHHHHHHHHHhCCCeEEEEecCCCChHHHHHHHHHHhCCC
Confidence 4666666666666654 34 556655221 2222 222333333 3778888999999999999999998
Q ss_pred EEEechhhh
Q 017271 233 VIQIFVGRL 241 (374)
Q Consensus 233 ~ISpFVGRI 241 (374)
++.-=++=+
T Consensus 220 ~vd~sv~Gl 228 (275)
T cd07937 220 IVDTAISPL 228 (275)
T ss_pred EEEEecccc
Confidence 876655443
No 191
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=36.13 E-value=3.7e+02 Score=28.41 Aligned_cols=60 Identities=15% Similarity=0.119 Sum_probs=38.0
Q ss_pred HHhcCCCCCCCcEEEEecCChhHHHHHHHHHHcCceeEEeecCCH----------HHHHHHHHcCCcEEE
Q 017271 176 KLYSEIDVPPERLLFKIPSTWQGIEASRLLESEGIQTHLTFVYSF----------AQAAAAAQAGASVIQ 235 (374)
Q Consensus 176 ~l~~~~gv~~~nVlIKIPaT~eGi~A~~~L~~eGI~vN~TlIFS~----------~QA~aaa~AGas~IS 235 (374)
+...+.|++.=||.+.+--...-.++++...+.|..+.+++.|+. +-+..+.++|+..|+
T Consensus 103 ~~A~~~Gvd~irif~~lnd~~n~~~~v~~ak~~G~~v~~~i~~t~~p~~~~~~~~~~a~~l~~~Gad~I~ 172 (448)
T PRK12331 103 QKSVENGIDIIRIFDALNDVRNLETAVKATKKAGGHAQVAISYTTSPVHTIDYFVKLAKEMQEMGADSIC 172 (448)
T ss_pred HHHHHCCCCEEEEEEecCcHHHHHHHHHHHHHcCCeEEEEEEeecCCCCCHHHHHHHHHHHHHcCCCEEE
Confidence 334455776555555544344556678888888998887777655 334555677877654
No 192
>PRK11197 lldD L-lactate dehydrogenase; Provisional
Probab=36.09 E-value=1.2e+02 Score=31.50 Aligned_cols=105 Identities=18% Similarity=0.197 Sum_probs=70.9
Q ss_pred cCChhHHHHHHHHHHcCceeEEeecCCHHHHHHHHHcCCcEEE--echhhhhhhhhcCCCCccchhhhccCCCcHHHHHH
Q 017271 193 PSTWQGIEASRLLESEGIQTHLTFVYSFAQAAAAAQAGASVIQ--IFVGRLRDWARNHSGDPEIDDALKRGEDPALSLVS 270 (374)
Q Consensus 193 PaT~eGi~A~~~L~~eGI~vN~TlIFS~~QA~aaa~AGas~IS--pFVGRIdd~~~~~~~d~~~~~~~~~~~d~Gv~~v~ 270 (374)
..||+=|+-++... +.++-+--|.|.+.|..|.++|+..|- ---||..| +.-+-+....
T Consensus 231 ~ltW~di~~lr~~~--~~pvivKgV~s~~dA~~a~~~Gvd~I~Vs~hGGr~~d-----------------~~~~t~~~L~ 291 (381)
T PRK11197 231 SISWKDLEWIRDFW--DGPMVIKGILDPEDARDAVRFGADGIVVSNHGGRQLD-----------------GVLSSARALP 291 (381)
T ss_pred CCCHHHHHHHHHhC--CCCEEEEecCCHHHHHHHHhCCCCEEEECCCCCCCCC-----------------CcccHHHHHH
Confidence 46897777666543 678888999999999999999987653 33333211 0012233333
Q ss_pred HHHHHHHHcCccHHHH-HhccCChhcHHH--hhCCcEecccHHHHHHHHhCC
Q 017271 271 KAYNYIHKYGHKSKLM-AAAVRNKQDLFS--LLGVDYIIAPLKVLQSLKESA 319 (374)
Q Consensus 271 ~iy~~~k~~g~~T~vL-aAS~Rn~~~i~~--laG~D~lTipp~ll~~L~~~~ 319 (374)
++.+ ..+.+..|+ .-.+|+-.+++. .+|+|.+-+.-.++..+...+
T Consensus 292 ~i~~---a~~~~~~vi~dGGIr~g~Di~KALaLGA~~V~iGr~~l~~la~~G 340 (381)
T PRK11197 292 AIAD---AVKGDITILADSGIRNGLDVVRMIALGADTVLLGRAFVYALAAAG 340 (381)
T ss_pred HHHH---HhcCCCeEEeeCCcCcHHHHHHHHHcCcCceeEhHHHHHHHHhcc
Confidence 3333 333345555 467899999987 589999999999999886544
No 193
>PRK13307 bifunctional formaldehyde-activating enzyme/3-hexulose-6-phosphate synthase; Provisional
Probab=35.89 E-value=1.7e+02 Score=30.49 Aligned_cols=65 Identities=15% Similarity=0.130 Sum_probs=41.1
Q ss_pred HHHHHHHHHhcCCCCCCCcEEEEecC---ChhHHHHHHHHHHcC--ceeEEeecCC-HHH--HHHHHHcCCcEEEec
Q 017271 169 RKVHDLLKLYSEIDVPPERLLFKIPS---TWQGIEASRLLESEG--IQTHLTFVYS-FAQ--AAAAAQAGASVIQIF 237 (374)
Q Consensus 169 ~eA~~L~~l~~~~gv~~~nVlIKIPa---T~eGi~A~~~L~~eG--I~vN~TlIFS-~~Q--A~aaa~AGas~ISpF 237 (374)
++|.++.+...+. ...+|||=. ...|.+.++.|.+.| ..+-+-|-+. ... +..++++|+.++++-
T Consensus 185 ~~A~~i~~~l~~~----~~~~iKvG~~L~~~~G~~iVk~Lr~~~~~~~I~~DLK~~Di~~~vv~~~a~aGAD~vTVH 257 (391)
T PRK13307 185 EEVERVLSQLPKS----DHIIIEAGTPLIKKFGLEVISKIREVRPDAFIVADLKTLDTGNLEARMAADATADAVVIS 257 (391)
T ss_pred HHHHHHHHhcccc----cceEEEECHHHHHHhCHHHHHHHHHhCCCCeEEEEecccChhhHHHHHHHhcCCCEEEEe
Confidence 5677776654211 134789853 237999999999987 3454444433 233 336789999888775
No 194
>cd03313 enolase Enolase: Enolases are homodimeric enzymes that catalyse the reversible dehydration of 2-phospho-D-glycerate to phosphoenolpyruvate as part of the glycolytic and gluconeogenesis pathways. The reaction is facilitated by the presence of metal ions.
Probab=35.67 E-value=5.2e+02 Score=26.75 Aligned_cols=106 Identities=19% Similarity=0.186 Sum_probs=72.6
Q ss_pred CC-eEEEEecCC-----------------ccCCHHHHHHHHHHHHHHhcCCCCCCCcEEEEecCChhHHHHHHHHHHc--
Q 017271 149 PG-RVSTEVDAR-----------------LAYDTHGIIRKVHDLLKLYSEIDVPPERLLFKIPSTWQGIEASRLLESE-- 208 (374)
Q Consensus 149 ~G-~VS~EVdp~-----------------la~D~e~~I~eA~~L~~l~~~~gv~~~nVlIKIPaT~eGi~A~~~L~~e-- 208 (374)
+| .|.+-||.. -..+.+++++-.+++.+-| +=++|-=|...+-++..++|.+.
T Consensus 230 ~G~dv~i~lD~aas~~~~~~~y~~~~~~~~~~t~~eai~~~~~l~e~~-------~i~~iEdPl~~~D~eg~~~L~~~~g 302 (408)
T cd03313 230 PGKKIAIALDVAASEFYDEGKYVYDSDEGKKLTSEELIDYYKELVKKY-------PIVSIEDPFDEDDWEGWAKLTAKLG 302 (408)
T ss_pred CCCeEEEEEehhhhhhcccCcceeccCCCcccCHHHHHHHHHHHHHhC-------CcEEEEeCCCCcCHHHHHHHHHhcC
Confidence 56 588888872 1245566666655555433 33567778866666666667666
Q ss_pred -CceeEEee--cCCHHHHHHHHHcC-CcEEEechhhhhhhhhcCCCCccchhhhccCCCcHHHHHHHHHHHHHHcCccH
Q 017271 209 -GIQTHLTF--VYSFAQAAAAAQAG-ASVIQIFVGRLRDWARNHSGDPEIDDALKRGEDPALSLVSKAYNYIHKYGHKS 283 (374)
Q Consensus 209 -GI~vN~Tl--IFS~~QA~aaa~AG-as~ISpFVGRIdd~~~~~~~d~~~~~~~~~~~d~Gv~~v~~iy~~~k~~g~~T 283 (374)
.+++-.-= ++++.+...+.+.| +.++.|=++++ -|+.-+.++.++.+.+|..+
T Consensus 303 ~~ipi~gdE~~~~~~~~~~~~i~~~a~d~v~ik~~~i----------------------GGite~~~ia~lA~~~G~~~ 359 (408)
T cd03313 303 DKIQIVGDDLFVTNPERLKKGIEKKAANALLIKVNQI----------------------GTLTETIEAIKLAKKNGYGV 359 (408)
T ss_pred CCCeEEcCCcccCCHHHHHHHHHhCCCCEEEEccccc----------------------CCHHHHHHHHHHHHHcCCeE
Confidence 67776654 35799988888876 57777776665 27888888888889888764
No 195
>cd00308 enolase_like Enolase-superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion. Enolase superfamily contains different enzymes, like enolases, glutarate-, fucanate- and galactonate dehydratases, o-succinylbenzoate synthase, N-acylamino acid racemase, L-alanine-DL-glutamate epimerase, mandelate racemase, muconate lactonizing enzyme and 3-methylaspartase.
Probab=35.54 E-value=3.6e+02 Score=24.95 Aligned_cols=114 Identities=20% Similarity=0.212 Sum_probs=74.1
Q ss_pred HHHHHHhcCCCCeEEEEecCCccCCHHHHHHHHHHHHHHhcCCCCCCCcEEEEecCChhHHHHHHHHHHc-CceeEEee-
Q 017271 139 NVGGDLAKMVPGRVSTEVDARLAYDTHGIIRKVHDLLKLYSEIDVPPERLLFKIPSTWQGIEASRLLESE-GIQTHLTF- 216 (374)
Q Consensus 139 ~~g~eil~~v~G~VS~EVdp~la~D~e~~I~eA~~L~~l~~~~gv~~~nVlIKIPaT~eGi~A~~~L~~e-GI~vN~Tl- 216 (374)
+..+.+.+.+...+-+-+|++-+.|.+..++-++++.+ .+ =.+|-=|...+.+...+.|.+. ++++-+--
T Consensus 82 ~~i~~lr~~~g~~~~l~lDaN~~~~~~~a~~~~~~l~~----~~----i~~iEeP~~~~d~~~~~~L~~~~~~pIa~dEs 153 (229)
T cd00308 82 ERVRAVREAFGPDARLAVDANGAWTPKEAIRLIRALEK----YG----LAWIEEPCAPDDLEGYAALRRRTGIPIAADES 153 (229)
T ss_pred HHHHHHHHHhCCCCeEEEECCCCCCHHHHHHHHHHhhh----cC----CCeEECCCCccCHHHHHHHHhhCCCCEEeCCC
Confidence 33445556665577788888888887655554444433 22 2466667766666777777766 67876654
Q ss_pred cCCHHHHHHHHHcC-CcEEEechhhhhhhhhcCCCCccchhhhccCCCcHHHHHHHHHHHHHHcCcc
Q 017271 217 VYSFAQAAAAAQAG-ASVIQIFVGRLRDWARNHSGDPEIDDALKRGEDPALSLVSKAYNYIHKYGHK 282 (374)
Q Consensus 217 IFS~~QA~aaa~AG-as~ISpFVGRIdd~~~~~~~d~~~~~~~~~~~d~Gv~~v~~iy~~~k~~g~~ 282 (374)
++++.+.....+.+ +.++.+=++++ -|+..++++.++.+.+|.+
T Consensus 154 ~~~~~~~~~~~~~~~~d~~~~k~~~~----------------------GGi~~~~~i~~~a~~~gi~ 198 (229)
T cd00308 154 VTTVDDALEALELGAVDILQIKPTRV----------------------GGLTESRRAADLAEAFGIR 198 (229)
T ss_pred CCCHHHHHHHHHcCCCCEEecCcccc----------------------CCHHHHHHHHHHHHHcCCE
Confidence 56777776666665 56665544443 2788888998888888754
No 196
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=35.13 E-value=1.1e+02 Score=30.09 Aligned_cols=98 Identities=18% Similarity=0.143 Sum_probs=57.0
Q ss_pred hHHHHHHHHhcCCCCeEEEEecCCc--cCCHHHHHHHHHHHHHHhcCCCCCCCcEEEEecCCh---------hHHHHHHH
Q 017271 136 ALVNVGGDLAKMVPGRVSTEVDARL--AYDTHGIIRKVHDLLKLYSEIDVPPERLLFKIPSTW---------QGIEASRL 204 (374)
Q Consensus 136 ~~v~~g~eil~~v~G~VS~EVdp~l--a~D~e~~I~eA~~L~~l~~~~gv~~~nVlIKIPaT~---------eGi~A~~~ 204 (374)
..+..+++.-..+.+.|+....+.. ..|.+..++.++++.++ |+ ++|.|+ -|- +=++++++
T Consensus 124 ~~v~~ak~~g~~v~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~----G~--d~i~l~--DT~G~~~P~~v~~lv~~l~~ 195 (287)
T PRK05692 124 PVAEAAKQAGVRVRGYVSCVLGCPYEGEVPPEAVADVAERLFAL----GC--YEISLG--DTIGVGTPGQVRAVLEAVLA 195 (287)
T ss_pred HHHHHHHHcCCEEEEEEEEEecCCCCCCCCHHHHHHHHHHHHHc----CC--cEEEec--cccCccCHHHHHHHHHHHHH
Confidence 3444444332223455555443211 23566666666666654 45 455554 332 22344433
Q ss_pred HH---HcCceeEEeecCCHHHHHHHHHcCCcEEEechhhh
Q 017271 205 LE---SEGIQTHLTFVYSFAQAAAAAQAGASVIQIFVGRL 241 (374)
Q Consensus 205 L~---~eGI~vN~TlIFS~~QA~aaa~AGas~ISpFVGRI 241 (374)
-- .-+++++-|+=+.+.-+++|.++|+.++.-=++=|
T Consensus 196 ~~~~~~i~~H~Hn~~Gla~AN~laA~~aG~~~id~s~~Gl 235 (287)
T PRK05692 196 EFPAERLAGHFHDTYGQALANIYASLEEGITVFDASVGGL 235 (287)
T ss_pred hCCCCeEEEEecCCCCcHHHHHHHHHHhCCCEEEEEcccc
Confidence 21 23788899999999999999999999887665544
No 197
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=34.39 E-value=4.3e+02 Score=25.48 Aligned_cols=44 Identities=18% Similarity=0.025 Sum_probs=32.8
Q ss_pred HHHHHHHHHHc-CceeEE-eecCCHHHHHHHHHcCCcEEEechhhh
Q 017271 198 GIEASRLLESE-GIQTHL-TFVYSFAQAAAAAQAGASVIQIFVGRL 241 (374)
Q Consensus 198 Gi~A~~~L~~e-GI~vN~-TlIFS~~QA~aaa~AGas~ISpFVGRI 241 (374)
.++.++++.+. +|++-. .-|++.+++..+.++||+.|+..=+=+
T Consensus 219 ~~~~i~~i~~~~~ipii~~GGI~~~~da~~~l~~GAd~V~igra~l 264 (296)
T cd04740 219 ALRMVYQVYKAVEIPIIGVGGIASGEDALEFLMAGASAVQVGTANF 264 (296)
T ss_pred HHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHcCCCEEEEchhhh
Confidence 45777777664 677665 457899999999999998887664433
No 198
>PRK08898 coproporphyrinogen III oxidase; Provisional
Probab=34.21 E-value=2.2e+02 Score=29.13 Aligned_cols=81 Identities=17% Similarity=0.209 Sum_probs=50.6
Q ss_pred CeEEEEecCCccCCHHHHHHHHHHHHHHhcCCCCCCCcEEEEecCCh--------------hHHHHHHHHHHcCceeEEe
Q 017271 150 GRVSTEVDARLAYDTHGIIRKVHDLLKLYSEIDVPPERLLFKIPSTW--------------QGIEASRLLESEGIQTHLT 215 (374)
Q Consensus 150 G~VS~EVdp~la~D~e~~I~eA~~L~~l~~~~gv~~~nVlIKIPaT~--------------eGi~A~~~L~~eGI~vN~T 215 (374)
-.|++|.+|..-. . ++ .+...+.|+ .||-|-|=+.. +-.++++.+.+.+.++|+.
T Consensus 109 ~eit~E~~p~~~~-~----e~----L~~l~~~Gv--nrisiGvQS~~~~~L~~l~R~~~~~~~~~~i~~~~~~~~~v~~d 177 (394)
T PRK08898 109 AEITLEANPGTFE-A----EK----FAQFRASGV--NRLSIGIQSFNDAHLKALGRIHDGAEARAAIEIAAKHFDNFNLD 177 (394)
T ss_pred CeEEEEECCCCCC-H----HH----HHHHHHcCC--CeEEEecccCCHHHHHHhCCCCCHHHHHHHHHHHHHhCCceEEE
Confidence 3789999886432 1 12 222334456 56666654432 4467777777778999999
Q ss_pred ecCCH-HHH--------HHHHHcCCcEEEechhhh
Q 017271 216 FVYSF-AQA--------AAAAQAGASVIQIFVGRL 241 (374)
Q Consensus 216 lIFS~-~QA--------~aaa~AGas~ISpFVGRI 241 (374)
+||.+ .|. ..+.+.|+.-|+.|-=.+
T Consensus 178 lI~GlPgqt~~~~~~~l~~~~~l~p~~is~y~l~~ 212 (394)
T PRK08898 178 LMYALPGQTLDEALADVETALAFGPPHLSLYHLTL 212 (394)
T ss_pred EEcCCCCCCHHHHHHHHHHHHhcCCCEEEEeeeEE
Confidence 99986 232 224456887777775444
No 199
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=33.97 E-value=1.1e+02 Score=29.42 Aligned_cols=99 Identities=18% Similarity=0.102 Sum_probs=65.7
Q ss_pred cCCHHHHHHHHHHHHHHhcCCCCCCCcEEEEecCC-hhHHHHHHHHHHc--CceeEEeecCCHHHHHHHHHcCC-cEEEe
Q 017271 161 AYDTHGIIRKVHDLLKLYSEIDVPPERLLFKIPST-WQGIEASRLLESE--GIQTHLTFVYSFAQAAAAAQAGA-SVIQI 236 (374)
Q Consensus 161 a~D~e~~I~eA~~L~~l~~~~gv~~~nVlIKIPaT-~eGi~A~~~L~~e--GI~vN~TlIFS~~QA~aaa~AGa-s~ISp 236 (374)
..|.|+.+..++.+++- |++ .|-||-+ +...++|++|.++ ++-+=+-.|.+++|+.++.+||+ .++||
T Consensus 21 ~~~~e~a~~~a~Ali~g----Gi~----~IEITl~sp~a~e~I~~l~~~~p~~lIGAGTVL~~~q~~~a~~aGa~fiVsP 92 (211)
T COG0800 21 GDDVEEALPLAKALIEG----GIP----AIEITLRTPAALEAIRALAKEFPEALIGAGTVLNPEQARQAIAAGAQFIVSP 92 (211)
T ss_pred eCCHHHHHHHHHHHHHc----CCC----eEEEecCCCCHHHHHHHHHHhCcccEEccccccCHHHHHHHHHcCCCEEECC
Confidence 46677777777777664 342 4666654 4668888888876 57777888999999999999997 57788
Q ss_pred chhhh-hhhhhcCCCCccchhhhccCCCcHHHHHHHHHHHHH
Q 017271 237 FVGRL-RDWARNHSGDPEIDDALKRGEDPALSLVSKAYNYIH 277 (374)
Q Consensus 237 FVGRI-dd~~~~~~~d~~~~~~~~~~~d~Gv~~v~~iy~~~k 277 (374)
-+.+= -.....+.. -.-||+.+..++...++
T Consensus 93 ~~~~ev~~~a~~~~i----------p~~PG~~TptEi~~Ale 124 (211)
T COG0800 93 GLNPEVAKAANRYGI----------PYIPGVATPTEIMAALE 124 (211)
T ss_pred CCCHHHHHHHHhCCC----------cccCCCCCHHHHHHHHH
Confidence 76542 222211110 12367777777765443
No 200
>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in
Probab=33.30 E-value=3.9e+02 Score=25.88 Aligned_cols=111 Identities=15% Similarity=0.182 Sum_probs=62.6
Q ss_pred ccCCHHHHHHHHHHHHHHhcCCCCCCCcEEEEecC-ChhHHHHHHHHHHcCc-eeEEeecC----------CHHHHHHHH
Q 017271 160 LAYDTHGIIRKVHDLLKLYSEIDVPPERLLFKIPS-TWQGIEASRLLESEGI-QTHLTFVY----------SFAQAAAAA 227 (374)
Q Consensus 160 la~D~e~~I~eA~~L~~l~~~~gv~~~nVlIKIPa-T~eGi~A~~~L~~eGI-~vN~TlIF----------S~~QA~aaa 227 (374)
..++++.+++-++.|.++ || +.|=+=.|+ .+.-.++++.|.+.+. ++.....- .......+.
T Consensus 15 ~~~s~e~k~~i~~~L~~~----Gv--~~IE~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~a~ 88 (273)
T cd07941 15 ISFSVEDKLRIARKLDEL----GV--DYIEGGWPGSNPKDTEFFARAKKLKLKHAKLAAFGSTRRAGVKAEEDPNLQALL 88 (273)
T ss_pred CCCCHHHHHHHHHHHHHc----CC--CEEEecCCcCCHHHHHHHHHHHHcCCCCcEEEEEecccccCCCccchHHHHHHH
Confidence 456677676666666654 45 445554454 4455677777766653 23222211 111344577
Q ss_pred HcCCcEEEechhhhhhhhhcCCCCccchhhhccCCCcHHHHHHHHHHHHHHcCccHHH
Q 017271 228 QAGASVIQIFVGRLRDWARNHSGDPEIDDALKRGEDPALSLVSKAYNYIHKYGHKSKL 285 (374)
Q Consensus 228 ~AGas~ISpFVGRIdd~~~~~~~d~~~~~~~~~~~d~Gv~~v~~iy~~~k~~g~~T~v 285 (374)
++|...+-.|++-=+-+..++.+ ...+.-+..++++.++.+++|++..+
T Consensus 89 ~~g~~~i~i~~~~sd~~~~~~~~---------~~~~~~~~~~~~~i~~ak~~G~~v~~ 137 (273)
T cd07941 89 EAGTPVVTIFGKSWDLHVTEALG---------TTLEENLAMIRDSVAYLKSHGREVIF 137 (273)
T ss_pred hCCCCEEEEEEcCCHHHHHHHcC---------CCHHHHHHHHHHHHHHHHHcCCeEEE
Confidence 88998888877643322221111 11123578888899999999876533
No 201
>cd00739 DHPS DHPS subgroup of Pterin binding enzymes. DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS.
Probab=33.19 E-value=1.8e+02 Score=28.26 Aligned_cols=53 Identities=11% Similarity=0.092 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCcEEEEecC----Ch----hHHHHHHHHHHcCceeEEee
Q 017271 164 THGIIRKVHDLLKLYSEIDVPPERLLFKIPS----TW----QGIEASRLLESEGIQTHLTF 216 (374)
Q Consensus 164 ~e~~I~eA~~L~~l~~~~gv~~~nVlIKIPa----T~----eGi~A~~~L~~eGI~vN~Tl 216 (374)
.+++++.+++.++...+.|+++++|++=--. |. +-|+.++.|.+.|.++.+-+
T Consensus 145 ~~~~~~~~~~~i~~~~~~Gi~~~~Ii~DPg~gf~ks~~~~~~~l~~i~~l~~~~~pil~G~ 205 (257)
T cd00739 145 VDEVLSFLEARLEAAESAGVARNRIILDPGIGFGKTPEHNLELLRRLDELKQLGLPVLVGA 205 (257)
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHEEEecCCCcccCHHHHHHHHHHHHHHHhCCCcEEEEe
Confidence 5788888999999999999999999886432 21 23888888888888876544
No 202
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=33.11 E-value=2.4e+02 Score=27.47 Aligned_cols=108 Identities=16% Similarity=0.164 Sum_probs=63.1
Q ss_pred ccCCHHHHHHHHHHHHHHhcCCCCCCCcEEEE-------ecCChhHHHHHHHHHHc-CceeEEeecCCHHHHHHHHHcCC
Q 017271 160 LAYDTHGIIRKVHDLLKLYSEIDVPPERLLFK-------IPSTWQGIEASRLLESE-GIQTHLTFVYSFAQAAAAAQAGA 231 (374)
Q Consensus 160 la~D~e~~I~eA~~L~~l~~~~gv~~~nVlIK-------IPaT~eGi~A~~~L~~e-GI~vN~TlIFS~~QA~aaa~AGa 231 (374)
..+.+++.++=++.|.++. | +.|=+= +|+.-+--.+++.|... +.++ ..++-.......|.++|.
T Consensus 15 ~~~s~e~K~~i~~~L~~~G----v--~~IEvGs~~~~~~~p~~~d~~~~~~~l~~~~~~~~-~~~~~~~~dv~~A~~~g~ 87 (274)
T cd07938 15 TFIPTEDKIELIDALSAAG----L--RRIEVTSFVSPKWVPQMADAEEVLAGLPRRPGVRY-SALVPNLRGAERALAAGV 87 (274)
T ss_pred CCcCHHHHHHHHHHHHHcC----C--CEEEeCCCCCcccccccCCHHHHHhhcccCCCCEE-EEECCCHHHHHHHHHcCc
Confidence 4566777777777666653 4 333332 56544322455555432 4443 333457777888889999
Q ss_pred cEEEechhhhhhhhhcCCCCccchhhhccCCCcHHHHHHHHHHHHHHcCccH
Q 017271 232 SVIQIFVGRLRDWARNHSGDPEIDDALKRGEDPALSLVSKAYNYIHKYGHKS 283 (374)
Q Consensus 232 s~ISpFVGRIdd~~~~~~~d~~~~~~~~~~~d~Gv~~v~~iy~~~k~~g~~T 283 (374)
..+-.|++==+-+..++... ....-+..+.++.++.+++|...
T Consensus 88 ~~i~i~~~~Sd~~~~~~~~~---------s~~~~~~~~~~~v~~ak~~G~~v 130 (274)
T cd07938 88 DEVAVFVSASETFSQKNINC---------SIAESLERFEPVAELAKAAGLRV 130 (274)
T ss_pred CEEEEEEecCHHHHHHHcCC---------CHHHHHHHHHHHHHHHHHCCCeE
Confidence 98888876544332222211 11235677888888888888764
No 203
>PRK06512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=33.01 E-value=2e+02 Score=27.28 Aligned_cols=95 Identities=9% Similarity=0.038 Sum_probs=53.5
Q ss_pred HHHHHHHHHcCceeEEeecCCHHHHHHHHHcCCcEEEechhhhhhhhhcCCCCccchhhhccCCCcHHHHHHHHHHHHHH
Q 017271 199 IEASRLLESEGIQTHLTFVYSFAQAAAAAQAGASVIQIFVGRLRDWARNHSGDPEIDDALKRGEDPALSLVSKAYNYIHK 278 (374)
Q Consensus 199 i~A~~~L~~eGI~vN~TlIFS~~QA~aaa~AGas~ISpFVGRIdd~~~~~~~d~~~~~~~~~~~d~Gv~~v~~iy~~~k~ 278 (374)
+..++++-..+--+=++.+-|.+++..|.+.|++|+.. |-+....+ .. ..-.|+...+.+.+.
T Consensus 100 ~~~~r~~~~~~~iiG~s~~~s~~~a~~A~~~gaDYv~~--Gpv~t~tK--~~----------~~p~gl~~l~~~~~~--- 162 (221)
T PRK06512 100 LAEAIEKHAPKMIVGFGNLRDRHGAMEIGELRPDYLFF--GKLGADNK--PE----------AHPRNLSLAEWWAEM--- 162 (221)
T ss_pred HHHHHHhcCCCCEEEecCCCCHHHHHHhhhcCCCEEEE--CCCCCCCC--CC----------CCCCChHHHHHHHHh---
Confidence 45555444334334444567889998888999999853 33321111 10 011256655543221
Q ss_pred cCccHHHHHhccCChhcHHH--hhCCcEecccHHHH
Q 017271 279 YGHKSKLMAAAVRNKQDLFS--LLGVDYIIAPLKVL 312 (374)
Q Consensus 279 ~g~~T~vLaAS~Rn~~~i~~--laG~D~lTipp~ll 312 (374)
.+..|.+=.+-+.+++-+ .+|+|-+.+--.++
T Consensus 163 --~~iPvvAIGGI~~~n~~~~~~~GA~giAvisai~ 196 (221)
T PRK06512 163 --IEIPCIVQAGSDLASAVEVAETGAEFVALERAVF 196 (221)
T ss_pred --CCCCEEEEeCCCHHHHHHHHHhCCCEEEEhHHhh
Confidence 234455656668888866 58999886555544
No 204
>TIGR00221 nagA N-acetylglucosamine-6-phosphate deacetylase.
Probab=32.53 E-value=1.3e+02 Score=30.72 Aligned_cols=52 Identities=23% Similarity=0.166 Sum_probs=40.7
Q ss_pred hhHHHHHHHHHHcCceeEEe-ecCCHHHHHHHHHcCCcEEEechhhhhhhhhc
Q 017271 196 WQGIEASRLLESEGIQTHLT-FVYSFAQAAAAAQAGASVIQIFVGRLRDWARN 247 (374)
Q Consensus 196 ~eGi~A~~~L~~eGI~vN~T-lIFS~~QA~aaa~AGas~ISpFVGRIdd~~~~ 247 (374)
....++++.|.++||.+.+= ---+.+|+.+|.++|++.+.-+.+-+.-...+
T Consensus 177 ~~~~~~i~~l~~~gi~vs~GHs~A~~~~~~~a~~~Ga~~~THlfNaM~~~~hR 229 (380)
T TIGR00221 177 DQHFELIRHLKDAGIIVSAGHTNATYELAKAAFKAGATHATHLYNAMSPIHHR 229 (380)
T ss_pred CChHHHHHHHHHCCeEEEeeCCCCCHHHHHHHHHcCCCeeeeeccCCCCcCCC
Confidence 34679999999999988642 23468999999999999888888877665543
No 205
>COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism]
Probab=32.29 E-value=35 Score=33.93 Aligned_cols=96 Identities=23% Similarity=0.188 Sum_probs=57.2
Q ss_pred CcEEEEe---cCChhHHHHHHHHHHc-CceeE-EeecCCHHHHHHHHHcCCcEEEechhhhhhhhhcCCCCccchhhhcc
Q 017271 186 ERLLFKI---PSTWQGIEASRLLESE-GIQTH-LTFVYSFAQAAAAAQAGASVIQIFVGRLRDWARNHSGDPEIDDALKR 260 (374)
Q Consensus 186 ~nVlIKI---PaT~eGi~A~~~L~~e-GI~vN-~TlIFS~~QA~aaa~AGas~ISpFVGRIdd~~~~~~~d~~~~~~~~~ 260 (374)
+-||||= .+...=-+|++++.+. +-... =--+=|++|+..|++||+.+|= .|.+
T Consensus 159 DavliKDNHia~~g~i~~Av~~aR~~~~~~~kIEVEvesle~~~eAl~agaDiIm------LDNm--------------- 217 (280)
T COG0157 159 DAVLIKDNHIAAAGSITEAVRRARAAAPFTKKIEVEVESLEEAEEALEAGADIIM------LDNM--------------- 217 (280)
T ss_pred ceEEehhhHHHHhccHHHHHHHHHHhCCCCceEEEEcCCHHHHHHHHHcCCCEEE------ecCC---------------
Confidence 4578872 1111112355555554 32221 2257899999999999999872 2211
Q ss_pred CCCcHHHHHHHHHHHHHHcCccHHHHHhccC-ChhcHHH--hhCCcEeccc
Q 017271 261 GEDPALSLVSKAYNYIHKYGHKSKLMAAAVR-NKQDLFS--LLGVDYIIAP 308 (374)
Q Consensus 261 ~~d~Gv~~v~~iy~~~k~~g~~T~vLaAS~R-n~~~i~~--laG~D~lTip 308 (374)
....++++.++++..+ ..++-||.. +.+.+.+ ..|+|++.+.
T Consensus 218 ----~~e~~~~av~~l~~~~--~~~lEaSGgIt~~ni~~yA~tGVD~IS~g 262 (280)
T COG0157 218 ----SPEELKEAVKLLGLAG--RALLEASGGITLENIREYAETGVDVISVG 262 (280)
T ss_pred ----CHHHHHHHHHHhccCC--ceEEEEeCCCCHHHHHHHhhcCCCEEEeC
Confidence 2456777777763333 344556655 7777765 6899998665
No 206
>PLN02424 ketopantoate hydroxymethyltransferase
Probab=32.25 E-value=3.4e+02 Score=27.82 Aligned_cols=70 Identities=13% Similarity=0.037 Sum_probs=52.2
Q ss_pred HHHHHHHHhcCCCCeEEEEecCCccC--CHHHHHHHHHHHHHHhcCCCCCCCcEEEEecCC-hhHHHHHHHHHHcCceeE
Q 017271 137 LVNVGGDLAKMVPGRVSTEVDARLAY--DTHGIIRKVHDLLKLYSEIDVPPERLLFKIPST-WQGIEASRLLESEGIQTH 213 (374)
Q Consensus 137 ~v~~g~eil~~v~G~VS~EVdp~la~--D~e~~I~eA~~L~~l~~~~gv~~~nVlIKIPaT-~eGi~A~~~L~~eGI~vN 213 (374)
++...+.+.++.+..+++==-|..+| +.++.++.|.+|.+-. -=..|||=.. .+-+++++.|.+.||+|.
T Consensus 83 mi~H~~aV~Rga~~a~vVaDmPfgSY~~s~e~av~nA~rl~~ea-------Ga~aVKlEGg~~~~~~~I~~l~~~GIPV~ 155 (332)
T PLN02424 83 MLVHCRAVARGANRPLLVGDLPFGSYESSTDQAVESAVRMLKEG-------GMDAVKLEGGSPSRVTAAKAIVEAGIAVM 155 (332)
T ss_pred HHHHHHHHhccCCCCEEEeCCCCCCCCCCHHHHHHHHHHHHHHh-------CCcEEEECCCcHHHHHHHHHHHHcCCCEE
Confidence 34445567778777777633455545 6888999998886632 2367999988 678899999999999998
No 207
>TIGR03247 glucar-dehydr glucarate dehydratase. Glucarate dehydratase converts D-glucarate (and L-idarate, a stereoisomer) to 5-dehydro-4-deoxyglucarate which is subsequently acted on by GarL, tartronate semialdehyde reductase and glycerate kinase (, GenProp0716). The E. coli enzyme has been well-characterized.
Probab=31.96 E-value=4.8e+02 Score=27.38 Aligned_cols=107 Identities=17% Similarity=0.124 Sum_probs=68.6
Q ss_pred HHhcCCCCeEEEEecCCccCCHHHHHHHHHHHHHHhcCCCCCCCcEEEEecCChh----HHHHHHHHHHc-CceeEEe-e
Q 017271 143 DLAKMVPGRVSTEVDARLAYDTHGIIRKVHDLLKLYSEIDVPPERLLFKIPSTWQ----GIEASRLLESE-GIQTHLT-F 216 (374)
Q Consensus 143 eil~~v~G~VS~EVdp~la~D~e~~I~eA~~L~~l~~~~gv~~~nVlIKIPaT~e----Gi~A~~~L~~e-GI~vN~T-l 216 (374)
.+.+.+ +.+.+-||++-+.+.++.++-+++|... + .+|-=|...+ |+..+++|.+. +|++-+- .
T Consensus 218 avRea~-~d~~L~vDAN~~wt~~~Ai~~~~~Le~~-----~----~~iEePv~~~d~~~~~~~la~Lr~~~~iPIa~dEs 287 (441)
T TIGR03247 218 ALAKRF-PQARITLDPNGAWSLDEAIALCKDLKGV-----L----AYAEDPCGAEQGYSGREVMAEFRRATGLPTATNMI 287 (441)
T ss_pred HHHHhC-CCCeEEEECCCCCCHHHHHHHHHHhhhh-----h----ceEeCCCCcccccchHHHHHHHHHhCCCCEEcCCc
Confidence 344445 4678889998888887666666655441 1 1444455443 47777788654 7777443 5
Q ss_pred cCCHHHHHHHHHcC-CcEEEechhhhhhhhhcCCCCccchhhhccCCCcHHHHHHHHHHHHHHcCcc
Q 017271 217 VYSFAQAAAAAQAG-ASVIQIFVGRLRDWARNHSGDPEIDDALKRGEDPALSLVSKAYNYIHKYGHK 282 (374)
Q Consensus 217 IFS~~QA~aaa~AG-as~ISpFVGRIdd~~~~~~~d~~~~~~~~~~~d~Gv~~v~~iy~~~k~~g~~ 282 (374)
++++.++....+.| +.++.|=++ .-|+...+++.++-+.+|.+
T Consensus 288 ~~~~~~~~~li~~~avdi~~~d~~-----------------------~gGIt~~~kIa~lA~a~Gi~ 331 (441)
T TIGR03247 288 ATDWRQMGHALQLQAVDIPLADPH-----------------------FWTMQGSVRVAQMCHDWGLT 331 (441)
T ss_pred cCCHHHHHHHHHhCCCCEEeccCC-----------------------cchHHHHHHHHHHHHHcCCE
Confidence 67888888888876 445443221 12777788888888888754
No 208
>PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed
Probab=31.52 E-value=4.3e+02 Score=26.94 Aligned_cols=82 Identities=18% Similarity=0.154 Sum_probs=56.9
Q ss_pred CCeEEEEecCCccCCHHHHHHHHHHHHHHhcCCCCCCCcEEEEecCC---------hhHHHHHHH-HHHcCceeEEeecC
Q 017271 149 PGRVSTEVDARLAYDTHGIIRKVHDLLKLYSEIDVPPERLLFKIPST---------WQGIEASRL-LESEGIQTHLTFVY 218 (374)
Q Consensus 149 ~G~VS~EVdp~la~D~e~~I~eA~~L~~l~~~~gv~~~nVlIKIPaT---------~eGi~A~~~-L~~eGI~vN~TlIF 218 (374)
+|+..+=.-|...++.+.+++.|+++.+....+.. . -..| |-| .+|++..++ .++.|+.+ +|-+|
T Consensus 91 ~~~~~~IAGPCsiEs~e~~~~~A~~lk~~ga~~~r--~-~~fK-pRTsp~sf~G~g~~gL~~L~~~~~~~Gl~v-~tev~ 165 (335)
T PRK08673 91 GGKPVVIAGPCSVESEEQILEIARAVKEAGAQILR--G-GAFK-PRTSPYSFQGLGEEGLKLLAEAREETGLPI-VTEVM 165 (335)
T ss_pred CCceEEEEecCccCCHHHHHHHHHHHHHhchhhcc--C-cEec-CCCCCcccccccHHHHHHHHHHHHHcCCcE-EEeeC
Confidence 35565656677778999999999999888754321 1 1224 333 367887777 44559999 88999
Q ss_pred CHHHHHHHHHcCCcEEEe
Q 017271 219 SFAQAAAAAQAGASVIQI 236 (374)
Q Consensus 219 S~~QA~aaa~AGas~ISp 236 (374)
+..|+..+++. +.++.+
T Consensus 166 d~~~~~~l~~~-vd~lqI 182 (335)
T PRK08673 166 DPRDVELVAEY-VDILQI 182 (335)
T ss_pred CHHHHHHHHHh-CCeEEE
Confidence 99999999876 444433
No 209
>PRK00208 thiG thiazole synthase; Reviewed
Probab=31.48 E-value=3.5e+02 Score=26.66 Aligned_cols=38 Identities=13% Similarity=0.035 Sum_probs=25.6
Q ss_pred ChhHHHHHHHHHHcCceeEEe-ecCCHHHHHHHHHcCCcEE
Q 017271 195 TWQGIEASRLLESEGIQTHLT-FVYSFAQAAAAAQAGASVI 234 (374)
Q Consensus 195 T~eGi~A~~~L~~eGI~vN~T-lIFS~~QA~aaa~AGas~I 234 (374)
+++-++.+++- .+++|.+- -|-+++|+..|.+.|+.-+
T Consensus 163 ~~~~i~~i~e~--~~vpVIveaGI~tpeda~~AmelGAdgV 201 (250)
T PRK00208 163 NPYNLRIIIEQ--ADVPVIVDAGIGTPSDAAQAMELGADAV 201 (250)
T ss_pred CHHHHHHHHHh--cCCeEEEeCCCCCHHHHHHHHHcCCCEE
Confidence 44555555443 36666554 4788999999999997543
No 210
>PF06230 DUF1009: Protein of unknown function (DUF1009); InterPro: IPR010415 This is a family of uncharacterised bacterial proteins.
Probab=31.38 E-value=1.9e+02 Score=27.67 Aligned_cols=66 Identities=21% Similarity=0.272 Sum_probs=50.6
Q ss_pred CCHHHHHHHHHHHHHHhcCCCCCCCcEEEEecCChh---------HHHHHHHHHHcCceeEE-----eecCCHHHHHHHH
Q 017271 162 YDTHGIIRKVHDLLKLYSEIDVPPERLLFKIPSTWQ---------GIEASRLLESEGIQTHL-----TFVYSFAQAAAAA 227 (374)
Q Consensus 162 ~D~e~~I~eA~~L~~l~~~~gv~~~nVlIKIPaT~e---------Gi~A~~~L~~eGI~vN~-----TlIFS~~QA~aaa 227 (374)
.=|++||+.+-++.. -.+.-|+||+|-..+ |.+-++.+.+.|..+-+ |+++..+..++.|
T Consensus 132 EGTD~~i~R~~~l~~------~~~~~VlvK~~Kp~QD~R~DlPtIG~~Tv~~~~~ag~~~laveAg~tl~ld~~~~i~~A 205 (214)
T PF06230_consen 132 EGTDAMIRRAGELRG------KGKGGVLVKVPKPGQDLRFDLPTIGPDTVENAAEAGLAGLAVEAGKTLILDREEVIALA 205 (214)
T ss_pred ccHHHHHHHHHHhcC------CCCCEEEEEccCCCCcccccccccCHHHHHHHHHcCCeEEEEecCcEEEecHHHHHHHH
Confidence 569999999877765 124679999998774 77888888888877654 8999998888877
Q ss_pred Hc-CCcE
Q 017271 228 QA-GASV 233 (374)
Q Consensus 228 ~A-Gas~ 233 (374)
++ |-.+
T Consensus 206 d~~gi~i 212 (214)
T PF06230_consen 206 DKAGIFI 212 (214)
T ss_pred HHcCCEE
Confidence 54 5443
No 211
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=30.82 E-value=1.6e+02 Score=27.92 Aligned_cols=122 Identities=11% Similarity=0.138 Sum_probs=72.3
Q ss_pred HHHHhcCCCCCCCcEEEEecCChhHHHHHHHHHHcCceeEEeecC--CHHHHHHHHHc--CCcEEEechhhhhhhhhcCC
Q 017271 174 LLKLYSEIDVPPERLLFKIPSTWQGIEASRLLESEGIQTHLTFVY--SFAQAAAAAQA--GASVIQIFVGRLRDWARNHS 249 (374)
Q Consensus 174 L~~l~~~~gv~~~nVlIKIPaT~eGi~A~~~L~~eGI~vN~TlIF--S~~QA~aaa~A--Gas~ISpFVGRIdd~~~~~~ 249 (374)
++..|.+.|. +.|.|=+=+|..-.+.++..++.|+++=+.+-- .+++..-..+. ..-+.|..-|- .
T Consensus 73 ~i~~~~~~ga--d~i~~H~Ea~~~~~~~l~~ik~~g~k~GlalnP~Tp~~~i~~~l~~~D~vlvMtV~PGf--------g 142 (220)
T PRK08883 73 IIPDFAKAGA--SMITFHVEASEHVDRTLQLIKEHGCQAGVVLNPATPLHHLEYIMDKVDLILLMSVNPGF--------G 142 (220)
T ss_pred HHHHHHHhCC--CEEEEcccCcccHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHhCCeEEEEEecCCC--------C
Confidence 3333444444 678888888877668888888888876544433 11222111110 01111111110 0
Q ss_pred CCccchhhhccCCCcHHHHHHHHHHHHHHcCccHHHHHhccCChhcHHH--hhCCcEecccHHHHH
Q 017271 250 GDPEIDDALKRGEDPALSLVSKAYNYIHKYGHKSKLMAAAVRNKQDLFS--LLGVDYIIAPLKVLQ 313 (374)
Q Consensus 250 ~d~~~~~~~~~~~d~Gv~~v~~iy~~~k~~g~~T~vLaAS~Rn~~~i~~--laG~D~lTipp~ll~ 313 (374)
+.+. ...++.-++++.++.+++|++..+.+...-|.+++-. .+|+|.+.+.-.+++
T Consensus 143 Gq~f--------i~~~lekI~~l~~~~~~~~~~~~I~vdGGI~~eni~~l~~aGAd~vVvGSaIf~ 200 (220)
T PRK08883 143 GQSF--------IPHTLDKLRAVRKMIDESGRDIRLEIDGGVKVDNIREIAEAGADMFVAGSAIFG 200 (220)
T ss_pred Ccee--------cHhHHHHHHHHHHHHHhcCCCeeEEEECCCCHHHHHHHHHcCCCEEEEeHHHhC
Confidence 0000 1246778888888888888777777777778888876 599999988877654
No 212
>TIGR01927 menC_gamma/gm+ o-succinylbenzoic acid (OSB) synthetase. This model describes the enzyme o-succinylbenzoic acid synthetase (menC) that is involved in one of the steps of the menaquinone biosynthesis pathway. It takes SHCHC and makes it into 2-succinylbenzoate. Included in this model are gamma proteobacteria and archaea. Many of the com-names of the proteins identified by the model are identified as O-succinylbenzoyl-CoA synthase in error.
Probab=30.82 E-value=5.3e+02 Score=25.40 Aligned_cols=109 Identities=15% Similarity=0.193 Sum_probs=71.1
Q ss_pred HHhcCCCCeEEEEecCCccCCHHHHHHHHHHHHHHhcC-CCCCCCc-EEEEecCChhHHHHHHHHHHc-CceeEEee-cC
Q 017271 143 DLAKMVPGRVSTEVDARLAYDTHGIIRKVHDLLKLYSE-IDVPPER-LLFKIPSTWQGIEASRLLESE-GIQTHLTF-VY 218 (374)
Q Consensus 143 eil~~v~G~VS~EVdp~la~D~e~~I~eA~~L~~l~~~-~gv~~~n-VlIKIPaT~eGi~A~~~L~~e-GI~vN~Tl-IF 218 (374)
.+.+.++..+.+-||++-+.+.+. |.++.+..++ .| -+ -+|-=|.... +.++.|... ++++-+-- ++
T Consensus 146 ~vr~~~g~~~~l~vDaN~~w~~~~----A~~~~~~l~~~~~---~~i~~iEqP~~~~--~~~~~l~~~~~~Pia~dEs~~ 216 (307)
T TIGR01927 146 LLLEALPDKAELRLDANGGLSPDE----AQQFLKALDPNLR---GRIAFLEEPLPDA--DEMSAFSEATGTAIALDESLW 216 (307)
T ss_pred HHHHHcCCCCeEEEeCCCCCCHHH----HHHHHHhcccccC---CCceEEeCCCCCH--HHHHHHHHhCCCCEEeCCCcC
Confidence 444555445888999887787764 4444443322 00 12 3666666433 566666555 78877665 68
Q ss_pred CHHHHHHHHHcCC-cEEEechhhhhhhhhcCCCCccchhhhccCCCcHHHHHHHHHHHHHHcCcc
Q 017271 219 SFAQAAAAAQAGA-SVIQIFVGRLRDWARNHSGDPEIDDALKRGEDPALSLVSKAYNYIHKYGHK 282 (374)
Q Consensus 219 S~~QA~aaa~AGa-s~ISpFVGRIdd~~~~~~~d~~~~~~~~~~~d~Gv~~v~~iy~~~k~~g~~ 282 (374)
+..+.....+.|+ .++.+=+.++ -|+..++++.++-+.+|.+
T Consensus 217 ~~~d~~~~~~~~~~d~i~ik~~~~----------------------GGi~~~~~i~~~a~~~gi~ 259 (307)
T TIGR01927 217 ELPQLADEYGPGWRGALVIKPAII----------------------GSPAKLRDLAQKAHRLGLQ 259 (307)
T ss_pred ChHHHHHHHhcCCCceEEECchhc----------------------CCHHHHHHHHHHHHHcCCC
Confidence 8888888888774 6777766653 2788889998888887755
No 213
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=30.75 E-value=2.6e+02 Score=30.03 Aligned_cols=127 Identities=14% Similarity=0.143 Sum_probs=77.7
Q ss_pred HHHHHHHHHHhcCCCCCCCcEEEEecCCh--hHHHHHHHHHHc--CceeEEeecCCHHHHHHHHHcCCcEEEech--hhh
Q 017271 168 IRKVHDLLKLYSEIDVPPERLLFKIPSTW--QGIEASRLLESE--GIQTHLTFVYSFAQAAAAAQAGASVIQIFV--GRL 241 (374)
Q Consensus 168 I~eA~~L~~l~~~~gv~~~nVlIKIPaT~--eGi~A~~~L~~e--GI~vN~TlIFS~~QA~aaa~AGas~ISpFV--GRI 241 (374)
.++++.|++.. + +-|.|-.+--. .=+..++++++. +..+-+-=|-+.++|..|.++|+..|-+=+ |.+
T Consensus 250 ~~r~~~l~~ag----~--d~i~iD~~~g~~~~~~~~i~~ik~~~p~~~vi~g~v~t~e~a~~a~~aGaD~i~vg~g~G~~ 323 (505)
T PLN02274 250 KERLEHLVKAG----V--DVVVLDSSQGDSIYQLEMIKYIKKTYPELDVIGGNVVTMYQAQNLIQAGVDGLRVGMGSGSI 323 (505)
T ss_pred HHHHHHHHHcC----C--CEEEEeCCCCCcHHHHHHHHHHHHhCCCCcEEEecCCCHHHHHHHHHcCcCEEEECCCCCcc
Confidence 46777787753 3 56777765322 224778888876 677767778999999999999999885532 222
Q ss_pred hhhhhcCCCCccchhhhccCCCcHHHHHHHHHHHHHHcCccHHHH-HhccCChhcHHH--hhCCcEecccHHHHH
Q 017271 242 RDWARNHSGDPEIDDALKRGEDPALSLVSKAYNYIHKYGHKSKLM-AAAVRNKQDLFS--LLGVDYIIAPLKVLQ 313 (374)
Q Consensus 242 dd~~~~~~~d~~~~~~~~~~~d~Gv~~v~~iy~~~k~~g~~T~vL-aAS~Rn~~~i~~--laG~D~lTipp~ll~ 313 (374)
...- .. -..| .+-...+..+.++.++.+ ..|+ .-.+++..++.. .+|+|.+.+.-.+..
T Consensus 324 ~~t~---~~-------~~~g-~~~~~~i~~~~~~~~~~~--vpVIadGGI~~~~di~kAla~GA~~V~vGs~~~~ 385 (505)
T PLN02274 324 CTTQ---EV-------CAVG-RGQATAVYKVASIAAQHG--VPVIADGGISNSGHIVKALTLGASTVMMGSFLAG 385 (505)
T ss_pred ccCc---cc-------cccC-CCcccHHHHHHHHHHhcC--CeEEEeCCCCCHHHHHHHHHcCCCEEEEchhhcc
Confidence 2110 00 0001 122223333444444443 3455 456889999987 589999987765443
No 214
>TIGR01928 menC_lowGC/arch o-succinylbenzoic acid (OSB) synthetase. This model describes the enzyme o-succinylbenzoic acid synthetase (menC) that is involved in one of the steps of the menaquinone biosynthesis pathway. It takes SHCHC and makes it into 2-succinylbenzoate. Included in this model are low GC gram positive bacteria and archaea. Also included in the seed and in the model are enzymes with the com-name of N-acylamino acid racemase (or the more general term, racemase / racemase family), which refers to the enzyme's industrial application as racemases, and not to its biological function as o-succinylbenzoic acid synthetase.
Probab=30.45 E-value=5.4e+02 Score=25.41 Aligned_cols=110 Identities=23% Similarity=0.245 Sum_probs=71.8
Q ss_pred HHHhcCCCCeEEEEecCCccCCHHHHHHHHHHHHHHhcCCCCCCCcEEEEecCChhHHHHHHHHHHc-CceeEEe-ecCC
Q 017271 142 GDLAKMVPGRVSTEVDARLAYDTHGIIRKVHDLLKLYSEIDVPPERLLFKIPSTWQGIEASRLLESE-GIQTHLT-FVYS 219 (374)
Q Consensus 142 ~eil~~v~G~VS~EVdp~la~D~e~~I~eA~~L~~l~~~~gv~~~nVlIKIPaT~eGi~A~~~L~~e-GI~vN~T-lIFS 219 (374)
+.+.+.++ .+.+-||++-+.+.+. ...++++.. ++ =..|-=|.-.+-+..+++|.+. ++++.+- -+++
T Consensus 165 ~~vr~~~~-~~~l~vDaN~~~~~~~-a~~~~~l~~----~~----~~~iEeP~~~~~~~~~~~l~~~~~~pia~dEs~~~ 234 (324)
T TIGR01928 165 KLRRLRFP-QIPLVIDANESYDLQD-FPRLKELDR----YQ----LLYIEEPFKIDDLSMLDELAKGTITPICLDESITS 234 (324)
T ss_pred HHHHHhCC-CCcEEEECCCCCCHHH-HHHHHHHhh----CC----CcEEECCCChhHHHHHHHHHhhcCCCEeeCCCcCC
Confidence 34444554 5778888887787765 233433332 21 1366667655555556666554 6665554 4789
Q ss_pred HHHHHHHHHcC-CcEEEechhhhhhhhhcCCCCccchhhhccCCCcHHHHHHHHHHHHHHcCccH
Q 017271 220 FAQAAAAAQAG-ASVIQIFVGRLRDWARNHSGDPEIDDALKRGEDPALSLVSKAYNYIHKYGHKS 283 (374)
Q Consensus 220 ~~QA~aaa~AG-as~ISpFVGRIdd~~~~~~~d~~~~~~~~~~~d~Gv~~v~~iy~~~k~~g~~T 283 (374)
+.+.....+.| +.++.|=+.++ -|+...+++.++.+.+|.++
T Consensus 235 ~~~~~~~~~~~~~dvi~~d~~~~----------------------GGit~~~~~~~~A~~~gi~~ 277 (324)
T TIGR01928 235 LDDARNLIELGNVKVINIKPGRL----------------------GGLTEVQKAIETCREHGAKV 277 (324)
T ss_pred HHHHHHHHHcCCCCEEEeCcchh----------------------cCHHHHHHHHHHHHHcCCeE
Confidence 99988888776 67887766664 27888899998888887653
No 215
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=30.20 E-value=4.3e+02 Score=25.76 Aligned_cols=39 Identities=10% Similarity=0.033 Sum_probs=26.5
Q ss_pred HHHHHHHHHc-CceeEEee-cCCHHHHHHHHHc-CCcEEEec
Q 017271 199 IEASRLLESE-GIQTHLTF-VYSFAQAAAAAQA-GASVIQIF 237 (374)
Q Consensus 199 i~A~~~L~~e-GI~vN~Tl-IFS~~QA~aaa~A-Gas~ISpF 237 (374)
+..++.+.+. ++++-+.- +.+.+++..+.++ |+.+|+.-
T Consensus 270 ~~~~~~ir~~~~iPVi~~Ggi~t~~~a~~~l~~g~aD~V~ig 311 (327)
T cd02803 270 LELAEKIKKAVKIPVIAVGGIRDPEVAEEILAEGKADLVALG 311 (327)
T ss_pred HHHHHHHHHHCCCCEEEeCCCCCHHHHHHHHHCCCCCeeeec
Confidence 4444445443 67766654 5679999999998 68877763
No 216
>PLN02925 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
Probab=30.04 E-value=84 Score=35.21 Aligned_cols=73 Identities=16% Similarity=0.315 Sum_probs=54.9
Q ss_pred hhhHHHHHHHHhcC----C-CCeEEEEecCCccCCHHHHHHHHHHHHHHhcCCCCCCCcEEEEecCCh--hHHHHHHHHH
Q 017271 134 NKALVNVGGDLAKM----V-PGRVSTEVDARLAYDTHGIIRKVHDLLKLYSEIDVPPERLLFKIPSTW--QGIEASRLLE 206 (374)
Q Consensus 134 ~~~~v~~g~eil~~----v-~G~VS~EVdp~la~D~e~~I~eA~~L~~l~~~~gv~~~nVlIKIPaT~--eGi~A~~~L~ 206 (374)
+.++++.+++.--- + .|.+|-++-.++.+..++|++-|.+.++++++.|. .||+|-+-++. ..+.|-+.|.
T Consensus 212 f~~~v~~ak~~~~~iRIGvN~GSLs~ri~~~yGdtp~gmVeSAle~~~i~e~~~f--~diviS~KsSn~~~~V~AyR~La 289 (733)
T PLN02925 212 FTPLVEKCKKYGRAMRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDY--HNFVFSMKASNPVVMVQAYRLLV 289 (733)
T ss_pred HHHHHHHHHHCCCCEEEecCCcCchHHHHHHhCCChHHHHHHHHHHHHHHHHCCC--CcEEEEEEcCChHHHHHHHHHHH
Confidence 44566655553211 1 48888777777778899999999999999999998 88888887776 6788877775
Q ss_pred Hc
Q 017271 207 SE 208 (374)
Q Consensus 207 ~e 208 (374)
.+
T Consensus 290 ~~ 291 (733)
T PLN02925 290 AE 291 (733)
T ss_pred HH
Confidence 54
No 217
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=29.94 E-value=5.2e+02 Score=28.31 Aligned_cols=61 Identities=16% Similarity=0.111 Sum_probs=38.5
Q ss_pred HHHhcCCCCCCCcEEEEecCChhHHHHHHHHHHcCceeEEeecCCH------HH----HHHHHHcCCcEEE
Q 017271 175 LKLYSEIDVPPERLLFKIPSTWQGIEASRLLESEGIQTHLTFVYSF------AQ----AAAAAQAGASVIQ 235 (374)
Q Consensus 175 ~~l~~~~gv~~~nVlIKIPaT~eGi~A~~~L~~eGI~vN~TlIFS~------~Q----A~aaa~AGas~IS 235 (374)
++...+.|++.=|++..+--...-.++++...+.|..+.+++.|+. +. +..+.++|+..|+
T Consensus 97 v~~a~~~Gvd~irif~~lnd~~n~~~~i~~ak~~G~~v~~~i~~t~~p~~~~~~~~~~~~~~~~~Gad~I~ 167 (582)
T TIGR01108 97 VKKAVENGMDVFRIFDALNDPRNLQAAIQAAKKHGAHAQGTISYTTSPVHTLETYLDLAEELLEMGVDSIC 167 (582)
T ss_pred HHHHHHCCCCEEEEEEecCcHHHHHHHHHHHHHcCCEEEEEEEeccCCCCCHHHHHHHHHHHHHcCCCEEE
Confidence 3444455776555555544444667788888889999998877553 33 3345567877553
No 218
>PTZ00413 lipoate synthase; Provisional
Probab=29.84 E-value=3e+02 Score=28.83 Aligned_cols=134 Identities=8% Similarity=0.101 Sum_probs=73.5
Q ss_pred CCHHHHHHHHHHHHHHhcCCCCCCCcEEEEecCC----hhH----HHHHHHHHHc--CceeEEee-cC--CHHHHHHHHH
Q 017271 162 YDTHGIIRKVHDLLKLYSEIDVPPERLLFKIPST----WQG----IEASRLLESE--GIQTHLTF-VY--SFAQAAAAAQ 228 (374)
Q Consensus 162 ~D~e~~I~eA~~L~~l~~~~gv~~~nVlIKIPaT----~eG----i~A~~~L~~e--GI~vN~Tl-IF--S~~QA~aaa~ 228 (374)
-|.++.++.|+...++ |+ ..++|-=-.- ..| .++++++.+. ++.+-+-+ .| +.+|...-.+
T Consensus 177 lD~eEp~~vA~av~~~----Gl--~~~VVTSv~RDDL~D~ga~~~a~~I~~Ir~~~p~~~IevligDf~g~~e~l~~L~e 250 (398)
T PTZ00413 177 LDPNEPEKVAKAVAEM----GV--DYIVMTMVDRDDLPDGGASHVARCVELIKESNPELLLEALVGDFHGDLKSVEKLAN 250 (398)
T ss_pred CCHHHHHHHHHHHHHc----CC--CEEEEEEEcCCCCChhhHHHHHHHHHHHHccCCCCeEEEcCCccccCHHHHHHHHh
Confidence 4899999999877665 34 2444432211 122 4556666653 56665553 56 8899999999
Q ss_pred cCCcEEEechhhhhhhhhcCCC-CccchhhhccCCCcHHHHHHHHHHHHHHcCccH--HHHHhccCChhcHHH------h
Q 017271 229 AGASVIQIFVGRLRDWARNHSG-DPEIDDALKRGEDPALSLVSKAYNYIHKYGHKS--KLMAAAVRNKQDLFS------L 299 (374)
Q Consensus 229 AGas~ISpFVGRIdd~~~~~~~-d~~~~~~~~~~~d~Gv~~v~~iy~~~k~~g~~T--~vLaAS~Rn~~~i~~------l 299 (374)
||+.++.--+-=+...+.+-.. ...+ +.-+..++.+.+.| .-|..| =+|.-=+-+.+++++ .
T Consensus 251 AG~dvynHNLETv~rLyp~VRt~~atY--------e~sLe~Lr~AKe~f-~~gi~tcSGiIVGLGET~eEvie~m~dLre 321 (398)
T PTZ00413 251 SPLSVYAHNIECVERITPYVRDRRASY--------RQSLKVLEHVKEFT-NGAMLTKSSIMLGLGETEEEVRQTLRDLRT 321 (398)
T ss_pred cCCCEEecccccCHhHHHHHccCcCCH--------HHHHHHHHHHHHHh-cCCceEeeeeEecCCCCHHHHHHHHHHHHH
Confidence 9999988885555544432110 0011 11233343333322 113322 233333344555543 4
Q ss_pred hCCcEecccHH
Q 017271 300 LGVDYIIAPLK 310 (374)
Q Consensus 300 aG~D~lTipp~ 310 (374)
+|||++|+..-
T Consensus 322 lGVDivtIGQY 332 (398)
T PTZ00413 322 AGVSAVTLGQY 332 (398)
T ss_pred cCCcEEeeccc
Confidence 89999998644
No 219
>PRK12999 pyruvate carboxylase; Reviewed
Probab=29.62 E-value=2.8e+02 Score=32.93 Aligned_cols=88 Identities=23% Similarity=0.224 Sum_probs=59.7
Q ss_pred CCCeEEEE---ecCCc-cCCHHHHHHHHHHHHHHhcCCCCCCCcEEEEecC---Ch-hHHHHHHHHHHc-----CceeEE
Q 017271 148 VPGRVSTE---VDARL-AYDTHGIIRKVHDLLKLYSEIDVPPERLLFKIPS---TW-QGIEASRLLESE-----GIQTHL 214 (374)
Q Consensus 148 v~G~VS~E---Vdp~l-a~D~e~~I~eA~~L~~l~~~~gv~~~nVlIKIPa---T~-eGi~A~~~L~~e-----GI~vN~ 214 (374)
..+.++.+ .||.- .+|.+-.++.|+++.++ |+ +.|.||=.+ |+ +-.+.++.|.++ +++++-
T Consensus 670 ~~~~i~ytg~~~d~~~~~~~~~~~~~~a~~l~~~----Ga--~~i~ikDt~G~l~P~~~~~lv~~lk~~~~ipi~~H~Hn 743 (1146)
T PRK12999 670 AEAAICYTGDILDPARAKYDLDYYVDLAKELEKA----GA--HILAIKDMAGLLKPAAAYELVSALKEEVDLPIHLHTHD 743 (1146)
T ss_pred EEEEEEEEecCCCCCCCCCCHHHHHHHHHHHHHc----CC--CEEEECCccCCCCHHHHHHHHHHHHHHcCCeEEEEeCC
Confidence 35678888 34422 26888888888888775 34 678777433 22 334444455443 677888
Q ss_pred eecCCHHHHHHHHHcCCcEEEechhhh
Q 017271 215 TFVYSFAQAAAAAQAGASVIQIFVGRL 241 (374)
Q Consensus 215 TlIFS~~QA~aaa~AGas~ISpFVGRI 241 (374)
|+=+...-+++|++||+.+|..=++=+
T Consensus 744 t~Gla~an~laA~~aGad~vD~av~gl 770 (1146)
T PRK12999 744 TSGNGLATYLAAAEAGVDIVDVAVASM 770 (1146)
T ss_pred CCchHHHHHHHHHHhCCCEEEecchhh
Confidence 888999999999999998877665544
No 220
>PTZ00450 macrophage migration inhibitory factor-like protein; Provisional
Probab=29.56 E-value=2e+02 Score=24.53 Aligned_cols=42 Identities=19% Similarity=0.138 Sum_probs=28.7
Q ss_pred eEEEEecCCccCCHHHHHHHHHHHHHHh-cCCCCCCCcEEEEecC
Q 017271 151 RVSTEVDARLAYDTHGIIRKVHDLLKLY-SEIDVPPERLLFKIPS 194 (374)
Q Consensus 151 ~VS~EVdp~la~D~e~~I~eA~~L~~l~-~~~gv~~~nVlIKIPa 194 (374)
++++..-.. -+.+..-+-+..|-++. +++||+++||+|+.=.
T Consensus 60 ~~~l~siG~--~~~~~n~~~s~~i~~~l~~~LgIp~dRiYI~f~d 102 (113)
T PTZ00450 60 YVRVEAWGE--YAPSKPKMMTPRITAAITKECGIPAERIYVFYYS 102 (113)
T ss_pred EEEEEEecC--cCHHHHHHHHHHHHHHHHHHcCCCcccEEEEEEc
Confidence 444444222 25566667777787765 6889999999999653
No 221
>cd03317 NAAAR N-acylamino acid racemase (NAAAR), an octameric enzyme that catalyzes the racemization of N-acylamino acids. NAAARs act on a broad range of N-acylamino acids rather than amino acids. Enantiopure amino acids are of industrial interest as chiral building blocks for antibiotics, herbicides, and drugs. NAAAR is a member of the enolase superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=29.17 E-value=5.8e+02 Score=25.31 Aligned_cols=109 Identities=20% Similarity=0.224 Sum_probs=74.6
Q ss_pred HHhcCCCCeEEEEecCCccCCHHHHHHHHHHHHHHhcCCCCCCCcEEEEecCChhHHHHHHHHHHc-CceeEEee-cCCH
Q 017271 143 DLAKMVPGRVSTEVDARLAYDTHGIIRKVHDLLKLYSEIDVPPERLLFKIPSTWQGIEASRLLESE-GIQTHLTF-VYSF 220 (374)
Q Consensus 143 eil~~v~G~VS~EVdp~la~D~e~~I~eA~~L~~l~~~~gv~~~nVlIKIPaT~eGi~A~~~L~~e-GI~vN~Tl-IFS~ 220 (374)
.+.+.++ .+.+-+|++-+.+.++. ..+++ .+++++ .+|-=|.....+...++|.+. ++++-+-- ++++
T Consensus 171 ~vr~~~g-~~~l~lDaN~~~~~~~a-~~~~~----l~~~~i----~~iEeP~~~~d~~~~~~l~~~~~~pia~dEs~~~~ 240 (354)
T cd03317 171 AVRERFP-DIPLMADANSAYTLADI-PLLKR----LDEYGL----LMIEQPLAADDLIDHAELQKLLKTPICLDESIQSA 240 (354)
T ss_pred HHHHHCC-CCeEEEECCCCCCHHHH-HHHHH----hhcCCc----cEEECCCChhHHHHHHHHHhhcCCCEEeCCccCCH
Confidence 4444454 67788888877777552 22322 232222 367767777777777777665 78876654 6899
Q ss_pred HHHHHHHHcC-CcEEEechhhhhhhhhcCCCCccchhhhccCCCcHHHHHHHHHHHHHHcCccH
Q 017271 221 AQAAAAAQAG-ASVIQIFVGRLRDWARNHSGDPEIDDALKRGEDPALSLVSKAYNYIHKYGHKS 283 (374)
Q Consensus 221 ~QA~aaa~AG-as~ISpFVGRIdd~~~~~~~d~~~~~~~~~~~d~Gv~~v~~iy~~~k~~g~~T 283 (374)
.+.....+.| +.++.|=+.++ -|+..++++..+-+.+|.++
T Consensus 241 ~~~~~~~~~~~~d~~~ik~~~~----------------------GGit~~~~i~~~A~~~gi~~ 282 (354)
T cd03317 241 EDARKAIELGACKIINIKPGRV----------------------GGLTEALKIHDLCQEHGIPV 282 (354)
T ss_pred HHHHHHHHcCCCCEEEeccccc----------------------CCHHHHHHHHHHHHHcCCcE
Confidence 9988888887 47777766554 27888999999988888764
No 222
>PF13361 UvrD_C: UvrD-like helicase C-terminal domain; PDB: 1UAA_B 3U4Q_A 3U44_A 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A ....
Probab=29.13 E-value=2e+02 Score=27.11 Aligned_cols=53 Identities=17% Similarity=0.199 Sum_probs=39.7
Q ss_pred HHHHHHHHHHhcCCCCCCCcEEEEecCChhHHHHHHHHHHcCceeEEeecCCHH
Q 017271 168 IRKVHDLLKLYSEIDVPPERLLFKIPSTWQGIEASRLLESEGIQTHLTFVYSFA 221 (374)
Q Consensus 168 I~eA~~L~~l~~~~gv~~~nVlIKIPaT~eGi~A~~~L~~eGI~vN~TlIFS~~ 221 (374)
..-++.+.++..+ |++...+.|=+....++....+.|.+.||++++.--.++.
T Consensus 61 ~~i~~~I~~l~~~-~~~~~diAVL~R~~~~~~~i~~~L~~~gIp~~~~~~~~~~ 113 (351)
T PF13361_consen 61 EYIAEEIKELIRN-GIPPSDIAVLVRTNSQIKEIEDALKEAGIPYRISGSKSLF 113 (351)
T ss_dssp HHHHHHHHHHHHT-TS-GGGEEEEESSGGHHHHHHHHHHHTTS-EEESSSSBGG
T ss_pred HHHHHHHHHHhhc-CCCcccEEEEEECchhHHHHHHHHhhhcceeEeccccchh
Confidence 3345566676655 8988999999999889999999999999999886554433
No 223
>PRK08599 coproporphyrinogen III oxidase; Provisional
Probab=28.98 E-value=2.3e+02 Score=28.51 Aligned_cols=76 Identities=14% Similarity=0.203 Sum_probs=47.1
Q ss_pred eEEEEecCCccCCHHHHHHHHHHHHHHhcCCCCCCCcEEEEecCCh--------------hHHHHHHHHHHcCce-eEEe
Q 017271 151 RVSTEVDARLAYDTHGIIRKVHDLLKLYSEIDVPPERLLFKIPSTW--------------QGIEASRLLESEGIQ-THLT 215 (374)
Q Consensus 151 ~VS~EVdp~la~D~e~~I~eA~~L~~l~~~~gv~~~nVlIKIPaT~--------------eGi~A~~~L~~eGI~-vN~T 215 (374)
.+++|++|..- |. + .+++.++.|+ .+|-|-|-+.. +-+++++.+.+.|+. +|+.
T Consensus 88 eit~e~~p~~l-~~-e-------~l~~l~~~G~--~rvsiGvqS~~~~~l~~l~r~~~~~~~~~~i~~l~~~g~~~v~~d 156 (377)
T PRK08599 88 EFTFEANPGDL-TK-E-------KLQVLKDSGV--NRISLGVQTFNDELLKKIGRTHNEEDVYEAIANAKKAGFDNISID 156 (377)
T ss_pred EEEEEeCCCCC-CH-H-------HHHHHHHcCC--CEEEEecccCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCcEEEe
Confidence 68888888532 21 2 2222333344 45555555532 458889999999997 8999
Q ss_pred ecCCH-HHH--------HHHHHcCCcEEEec
Q 017271 216 FVYSF-AQA--------AAAAQAGASVIQIF 237 (374)
Q Consensus 216 lIFS~-~QA--------~aaa~AGas~ISpF 237 (374)
+||.+ .|- ..+.+.|+.-++.|
T Consensus 157 li~GlPgqt~~~~~~~l~~~~~l~~~~i~~y 187 (377)
T PRK08599 157 LIYALPGQTIEDFKESLAKALALDIPHYSAY 187 (377)
T ss_pred eecCCCCCCHHHHHHHHHHHHccCCCEEeee
Confidence 99985 332 22445577777666
No 224
>PRK11059 regulatory protein CsrD; Provisional
Probab=28.94 E-value=7e+02 Score=26.93 Aligned_cols=134 Identities=13% Similarity=0.108 Sum_probs=80.7
Q ss_pred CCeEEEEecCCccCCHHHHHHHHHHHHHHhcCC-CCCCCcEEEEecCCh------hHHHHHHHHHHcCceeEEeec---C
Q 017271 149 PGRVSTEVDARLAYDTHGIIRKVHDLLKLYSEI-DVPPERLLFKIPSTW------QGIEASRLLESEGIQTHLTFV---Y 218 (374)
Q Consensus 149 ~G~VS~EVdp~la~D~e~~I~eA~~L~~l~~~~-gv~~~nVlIKIPaT~------eGi~A~~~L~~eGI~vN~TlI---F 218 (374)
+.++++-+++..-.|.+ ... .+.....+. +..++++++.|+.+- .-.+.++.|.+.|+++-+-=. +
T Consensus 483 ~~~l~inls~~~l~~~~-f~~---~l~~~l~~~~~~~~~~l~~Ei~E~~~~~~~~~~~~~l~~L~~~G~~iaiddfG~g~ 558 (640)
T PRK11059 483 EENLSINLSVDSLLSRA-FQR---WLRDTLLQCPRSQRKRLIFELAEADVCQHISRLRPVLRMLRGLGCRLAVDQAGLTV 558 (640)
T ss_pred CCeEEEEcCHHHhCChh-HHH---HHHHHHHhcCCCCcceEEEEEechhhhcCHHHHHHHHHHHHHCCCEEEEECCCCCc
Confidence 55889998876544432 223 244444444 677899999999862 457788999999999866422 1
Q ss_pred CHHHHHHHHHcCCcEEEechhhhhhhhhcCCCCccchhhhccCCCcHHHHHHHHHHHHHHcCccHHHHHhccCChhcHHH
Q 017271 219 SFAQAAAAAQAGASVIQIFVGRLRDWARNHSGDPEIDDALKRGEDPALSLVSKAYNYIHKYGHKSKLMAAAVRNKQDLFS 298 (374)
Q Consensus 219 S~~QA~aaa~AGas~ISpFVGRIdd~~~~~~~d~~~~~~~~~~~d~Gv~~v~~iy~~~k~~g~~T~vLaAS~Rn~~~i~~ 298 (374)
+--+++ .+-.++||=.=-+-+.+.. .....-..++.+.++.+..| .+|++-.+.+.++...
T Consensus 559 ~s~~~L--~~l~~d~iKid~s~v~~i~---------------~~~~~~~~v~sli~~a~~~~--i~viAegVEt~~~~~~ 619 (640)
T PRK11059 559 VSTSYI--KELNVELIKLHPSLVRNIH---------------KRTENQLFVRSLVGACAGTE--TQVFATGVESREEWQT 619 (640)
T ss_pred ccHHHH--HhCCCCEEEECHHHHhhhh---------------cCchhHHHHHHHHHHHHHCC--CeEEEEEeCCHHHHHH
Confidence 111111 1223444433222221110 01123445777777777664 6789999999988876
Q ss_pred --hhCCcEe
Q 017271 299 --LLGVDYI 305 (374)
Q Consensus 299 --laG~D~l 305 (374)
..|||++
T Consensus 620 l~~lGvd~~ 628 (640)
T PRK11059 620 LQELGVSGG 628 (640)
T ss_pred HHHhCCCee
Confidence 6899985
No 225
>PRK11359 cyclic-di-GMP phosphodiesterase; Provisional
Probab=27.95 E-value=8.1e+02 Score=26.59 Aligned_cols=134 Identities=11% Similarity=0.076 Sum_probs=81.9
Q ss_pred eEEEEecCCccCCHHHHHHHHHHHHHHhcCCCCCCCcEEEEecCCh------hHHHHHHHHHHcCceeEEeecCCH-HHH
Q 017271 151 RVSTEVDARLAYDTHGIIRKVHDLLKLYSEIDVPPERLLFKIPSTW------QGIEASRLLESEGIQTHLTFVYSF-AQA 223 (374)
Q Consensus 151 ~VS~EVdp~la~D~e~~I~eA~~L~~l~~~~gv~~~nVlIKIPaT~------eGi~A~~~L~~eGI~vN~TlIFS~-~QA 223 (374)
.+++-++|..-.+.+ ..+. +..+.++.++++.+++|-|+.+. .-.+.++.|.+.|+++-+.=.-+- .-.
T Consensus 631 ~~~inls~~~l~~~~-~~~~---l~~~l~~~~~~~~~l~~ei~e~~~~~~~~~~~~~l~~l~~~G~~i~ld~fg~~~~~~ 706 (799)
T PRK11359 631 ALSVNLSALHFRSNQ-LPNQ---VSDAMQAWGIDGHQLTVEITESMMMEHDTEIFKRIQILRDMGVGLSVDDFGTGFSGL 706 (799)
T ss_pred eEEEECCHHHhCCch-HHHH---HHHHHHHhCcChHhEEEEEcCchhhcCHHHHHHHHHHHHHCCCEEEEECCCCchhhH
Confidence 589999886443332 3333 55556667788899999999864 346778999999999976533222 221
Q ss_pred HHHHHcCCcEEEechhhhhhhhhcCCCCccchhhhccCCCcHHHHHHHHHHHHHHcCccHHHHHhccCChhcHHH--hhC
Q 017271 224 AAAAQAGASVIQIFVGRLRDWARNHSGDPEIDDALKRGEDPALSLVSKAYNYIHKYGHKSKLMAAAVRNKQDLFS--LLG 301 (374)
Q Consensus 224 ~aaa~AGas~ISpFVGRIdd~~~~~~~d~~~~~~~~~~~d~Gv~~v~~iy~~~k~~g~~T~vLaAS~Rn~~~i~~--laG 301 (374)
.......++||-.=-+-+.+.. .....-..++.+.++.+..| .++++-.+-+..+... .+|
T Consensus 707 ~~l~~l~~d~iKid~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~--i~via~gVe~~~~~~~l~~~g 769 (799)
T PRK11359 707 SRLVSLPVTEIKIDKSFVDRCL---------------TEKRILALLEAITSIGQSLN--LTVVAEGVETKEQFEMLRKIH 769 (799)
T ss_pred HHHhhCCCCEEEECHHHHhhcc---------------cChhHHHHHHHHHHHHHHCC--CeEEEEcCCCHHHHHHHHhcC
Confidence 2222334555544322222110 00123445666667777765 5578888888888765 689
Q ss_pred CcEe
Q 017271 302 VDYI 305 (374)
Q Consensus 302 ~D~l 305 (374)
||++
T Consensus 770 ~~~~ 773 (799)
T PRK11359 770 CRVI 773 (799)
T ss_pred CCEE
Confidence 9975
No 226
>PRK12344 putative alpha-isopropylmalate/homocitrate synthase family transferase; Provisional
Probab=27.93 E-value=5.4e+02 Score=27.68 Aligned_cols=134 Identities=14% Similarity=0.174 Sum_probs=75.8
Q ss_pred ccCCHHHHHHHHHHHHHHhcCCCCCCCcEEEEecC-ChhHHHHHHHHHHcCc-eeEEee-cCC---------HHHHHHHH
Q 017271 160 LAYDTHGIIRKVHDLLKLYSEIDVPPERLLFKIPS-TWQGIEASRLLESEGI-QTHLTF-VYS---------FAQAAAAA 227 (374)
Q Consensus 160 la~D~e~~I~eA~~L~~l~~~~gv~~~nVlIKIPa-T~eGi~A~~~L~~eGI-~vN~Tl-IFS---------~~QA~aaa 227 (374)
..+++++.++-++.|.++ |+ +.|=+=.|+ ++.-.++++.+.+.+. ++.++. .-. -.-..++.
T Consensus 22 ~~~s~e~Kl~ia~~L~~~----Gv--d~IEvG~p~as~~d~~~~~~i~~~~l~~~~i~~~~~~~~~~i~~~~d~~~e~~~ 95 (524)
T PRK12344 22 ISFSVEDKLRIARKLDEL----GV--DYIEGGWPGSNPKDTEFFKRAKELKLKHAKLAAFGSTRRAGVSAEEDPNLQALL 95 (524)
T ss_pred CCCCHHHHHHHHHHHHHc----CC--CEEEEcCCcCChhHHHHHHHHHHhCCCCcEEEEEeeccccCCCcccHHHHHHHH
Confidence 567788777777777665 45 555555565 4445777787876553 222222 111 11233456
Q ss_pred HcCCcEEEechhhhhhhhhcCCCCccchhhhccCCCcHHHHHHHHHHHHHHcCccHHHHHh----ccCC-hhcHHH----
Q 017271 228 QAGASVIQIFVGRLRDWARNHSGDPEIDDALKRGEDPALSLVSKAYNYIHKYGHKSKLMAA----AVRN-KQDLFS---- 298 (374)
Q Consensus 228 ~AGas~ISpFVGRIdd~~~~~~~d~~~~~~~~~~~d~Gv~~v~~iy~~~k~~g~~T~vLaA----S~Rn-~~~i~~---- 298 (374)
++|+..|..|++-=+-+...+.. ...+.-+..++++.++.+++|.+..+=.- +.|. ++-+++
T Consensus 96 ~~g~~~i~i~~~~Sd~h~~~~l~---------~s~~e~l~~~~~~v~~ak~~G~~v~~~~e~~~Da~r~d~~~l~~~~~~ 166 (524)
T PRK12344 96 DAGTPVVTIFGKSWDLHVTEALR---------TTLEENLAMIRDSVAYLKAHGREVIFDAEHFFDGYKANPEYALATLKA 166 (524)
T ss_pred hCCCCEEEEEECCCHHHHHHHcC---------CCHHHHHHHHHHHHHHHHHcCCeEEEccccccccccCCHHHHHHHHHH
Confidence 78999999997633222211111 11123578888999999999876432111 2333 333332
Q ss_pred --hhCCcEeccc
Q 017271 299 --LLGVDYIIAP 308 (374)
Q Consensus 299 --laG~D~lTip 308 (374)
.+|+|.+.+|
T Consensus 167 ~~~~Gad~i~l~ 178 (524)
T PRK12344 167 AAEAGADWVVLC 178 (524)
T ss_pred HHhCCCCeEEEc
Confidence 4788887666
No 227
>cd02911 arch_FMN Archeal FMN-binding domain. This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.
Probab=27.80 E-value=5.3e+02 Score=24.50 Aligned_cols=89 Identities=15% Similarity=0.050 Sum_probs=51.8
Q ss_pred HHHHHHHhcCCCCeEEEEecCCccCCHHHHHHHHHHHHHHhcCCCCCCCcEEEEecCChhH----HHHHHHHHHcCceeE
Q 017271 138 VNVGGDLAKMVPGRVSTEVDARLAYDTHGIIRKVHDLLKLYSEIDVPPERLLFKIPSTWQG----IEASRLLESEGIQTH 213 (374)
Q Consensus 138 v~~g~eil~~v~G~VS~EVdp~la~D~e~~I~eA~~L~~l~~~~gv~~~nVlIKIPaT~eG----i~A~~~L~~eGI~vN 213 (374)
.++.+.+.+ .+-+||+-+.+. .| +.+++-|+.+. +.|++ - |-+=....| +..++++. .+|++-
T Consensus 129 ~eiv~avr~-~~~pVsvKir~g--~~-~~~~~la~~l~----~aG~d--~--ihv~~~~~g~~ad~~~I~~i~-~~ipVI 195 (233)
T cd02911 129 SEFIKALKE-TGVPVSVKIRAG--VD-VDDEELARLIE----KAGAD--I--IHVDAMDPGNHADLKKIRDIS-TELFII 195 (233)
T ss_pred HHHHHHHHh-cCCCEEEEEcCC--cC-cCHHHHHHHHH----HhCCC--E--EEECcCCCCCCCcHHHHHHhc-CCCEEE
Confidence 333444443 356888888654 33 44555444444 44554 1 222222333 56666665 456654
Q ss_pred E-eecCCHHHHHHHHHcCCcEEEechhhh
Q 017271 214 L-TFVYSFAQAAAAAQAGASVIQIFVGRL 241 (374)
Q Consensus 214 ~-TlIFS~~QA~aaa~AGas~ISpFVGRI 241 (374)
. =-|++.+|+..+.+.|++.| .|||-
T Consensus 196 gnGgI~s~eda~~~l~~GaD~V--miGR~ 222 (233)
T cd02911 196 GNNSVTTIESAKEMFSYGADMV--SVARA 222 (233)
T ss_pred EECCcCCHHHHHHHHHcCCCEE--EEcCC
Confidence 4 46899999999999997765 45664
No 228
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=27.75 E-value=1.6e+02 Score=30.73 Aligned_cols=137 Identities=18% Similarity=0.257 Sum_probs=83.2
Q ss_pred eEEEEecCCccCCHHHHHHHHHHHHHHhcCCCCCCCcEEEEecCC--hhHHHHHHHHHHc--CceeEEeecCCHHHHHHH
Q 017271 151 RVSTEVDARLAYDTHGIIRKVHDLLKLYSEIDVPPERLLFKIPST--WQGIEASRLLESE--GIQTHLTFVYSFAQAAAA 226 (374)
Q Consensus 151 ~VS~EVdp~la~D~e~~I~eA~~L~~l~~~~gv~~~nVlIKIPaT--~eGi~A~~~L~~e--GI~vN~TlIFS~~QA~aa 226 (374)
+|..-|.++ +++.++++.|++.. + +-|.|=...- ..-++.++++.+. ++.+-+--|-|.++|..+
T Consensus 143 ~v~aavg~~-----~~~~~~v~~lv~aG----v--DvI~iD~a~g~~~~~~~~v~~ik~~~p~~~vi~g~V~T~e~a~~l 211 (404)
T PRK06843 143 RVGAAVSID-----IDTIERVEELVKAH----V--DILVIDSAHGHSTRIIELVKKIKTKYPNLDLIAGNIVTKEAALDL 211 (404)
T ss_pred EEEEEEeCC-----HHHHHHHHHHHhcC----C--CEEEEECCCCCChhHHHHHHHHHhhCCCCcEEEEecCCHHHHHHH
Confidence 455556432 33667777787752 3 4455543321 2335667777765 466666679999999999
Q ss_pred HHcCCcEEEechh--hhhhhhhcCCCCccchhhhccC-CCcHHHHHHHHHHHHHHcCccHHHHH-hccCChhcHHH--hh
Q 017271 227 AQAGASVIQIFVG--RLRDWARNHSGDPEIDDALKRG-EDPALSLVSKAYNYIHKYGHKSKLMA-AAVRNKQDLFS--LL 300 (374)
Q Consensus 227 a~AGas~ISpFVG--RIdd~~~~~~~d~~~~~~~~~~-~d~Gv~~v~~iy~~~k~~g~~T~vLa-AS~Rn~~~i~~--la 300 (374)
.++|+..|..=+| .+.- .+. . .+ ..|-+..+..+.++.++.+ ..|++ -.+++..++.. .+
T Consensus 212 ~~aGaD~I~vG~g~Gs~c~-tr~----------~-~g~g~p~ltai~~v~~~~~~~~--vpVIAdGGI~~~~Di~KALal 277 (404)
T PRK06843 212 ISVGADCLKVGIGPGSICT-TRI----------V-AGVGVPQITAICDVYEVCKNTN--ICIIADGGIRFSGDVVKAIAA 277 (404)
T ss_pred HHcCCCEEEECCCCCcCCc-cee----------e-cCCCCChHHHHHHHHHHHhhcC--CeEEEeCCCCCHHHHHHHHHc
Confidence 9999998873211 1110 000 0 01 1244556666666666654 34565 45889999987 58
Q ss_pred CCcEecccHHHH
Q 017271 301 GVDYIIAPLKVL 312 (374)
Q Consensus 301 G~D~lTipp~ll 312 (374)
|+|.+.+.-.+.
T Consensus 278 GA~aVmvGs~~a 289 (404)
T PRK06843 278 GADSVMIGNLFA 289 (404)
T ss_pred CCCEEEEcceee
Confidence 999998775543
No 229
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=27.65 E-value=2e+02 Score=26.83 Aligned_cols=40 Identities=23% Similarity=0.282 Sum_probs=29.9
Q ss_pred hhHHHHHHHHHHcCceeEEee--cCC--------HHHHHHHHHcCCcEEE
Q 017271 196 WQGIEASRLLESEGIQTHLTF--VYS--------FAQAAAAAQAGASVIQ 235 (374)
Q Consensus 196 ~eGi~A~~~L~~eGI~vN~Tl--IFS--------~~QA~aaa~AGas~IS 235 (374)
..-+++++.+.+.|+.+.+.+ +|. .+.+..+.++|+..|.
T Consensus 115 ~~~~~~i~~a~~~G~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~i~ 164 (265)
T cd03174 115 ENAEEAIEAAKEAGLEVEGSLEDAFGCKTDPEYVLEVAKALEEAGADEIS 164 (265)
T ss_pred HHHHHHHHHHHHCCCeEEEEEEeecCCCCCHHHHHHHHHHHHHcCCCEEE
Confidence 345788889999998887777 555 5566667788987666
No 230
>PRK02048 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Provisional
Probab=27.62 E-value=94 Score=34.20 Aligned_cols=73 Identities=16% Similarity=0.265 Sum_probs=54.0
Q ss_pred hhhhHHHHHHHHhcC----C-CCeEEEEecCCccCCHHHHHHHHHHHHHHhcCCCCCCCcEEEEecCCh--hHHHHHHHH
Q 017271 133 FNKALVNVGGDLAKM----V-PGRVSTEVDARLAYDTHGIIRKVHDLLKLYSEIDVPPERLLFKIPSTW--QGIEASRLL 205 (374)
Q Consensus 133 ~~~~~v~~g~eil~~----v-~G~VS~EVdp~la~D~e~~I~eA~~L~~l~~~~gv~~~nVlIKIPaT~--eGi~A~~~L 205 (374)
-.+++++.+++.--- + .|.+|-.+-.++.+..++|++-|.+.++++++.|. .||+|-+-++. ..+.|-|.|
T Consensus 142 ~~~~~v~~ak~~~~~iRIGvN~GSL~~~i~~~yg~tpe~mVeSAle~~~i~e~~~f--~diviS~KsS~~~~~V~AyRlL 219 (611)
T PRK02048 142 RFVPFLNICKENHTAIRIGVNHGSLSDRIMSRYGDTPEGMVESCMEFLRICVEEHF--TDVVISIKASNTVVMVRTVRLL 219 (611)
T ss_pred HHHHHHHHHHHCCCCEEEecCCcCchHHHHHHhCCChHHHHHHHHHHHHHHHHCCC--CcEEEEEEeCCcHHHHHHHHHH
Confidence 445677666653221 1 47777777667777899999999999999999999 68877666655 778887776
Q ss_pred HH
Q 017271 206 ES 207 (374)
Q Consensus 206 ~~ 207 (374)
..
T Consensus 220 a~ 221 (611)
T PRK02048 220 VA 221 (611)
T ss_pred HH
Confidence 65
No 231
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=27.56 E-value=1e+02 Score=31.67 Aligned_cols=87 Identities=9% Similarity=0.058 Sum_probs=49.0
Q ss_pred HHHHHHHHcCceeEEee----cCCHHHHHHHHHcCCcEEEechhhhhhhhhcCCCCccchhhhccCCCcHHHHHHHHHHH
Q 017271 200 EASRLLESEGIQTHLTF----VYSFAQAAAAAQAGASVIQIFVGRLRDWARNHSGDPEIDDALKRGEDPALSLVSKAYNY 275 (374)
Q Consensus 200 ~A~~~L~~eGI~vN~Tl----IFS~~QA~aaa~AGas~ISpFVGRIdd~~~~~~~d~~~~~~~~~~~d~Gv~~v~~iy~~ 275 (374)
+.++++.+.| +|++. ....+.+.++.++|+.++...-.-.+..|... .+ ....+.++
T Consensus 122 ~iv~~~~~~~--V~v~vr~~~~~~~e~a~~l~eaGvd~I~vhgrt~~~~h~~~---------------~~--~~~~i~~~ 182 (368)
T PRK08649 122 ERIAEIRDAG--VIVAVSLSPQRAQELAPTVVEAGVDLFVIQGTVVSAEHVSK---------------EG--EPLNLKEF 182 (368)
T ss_pred HHHHHHHhCe--EEEEEecCCcCHHHHHHHHHHCCCCEEEEeccchhhhccCC---------------cC--CHHHHHHH
Confidence 3445555544 33333 34557777888999999998765555433110 01 12223444
Q ss_pred HHHcCccHHHHHhccCChhcHHH--hhCCcEecc
Q 017271 276 IHKYGHKSKLMAAAVRNKQDLFS--LLGVDYIIA 307 (374)
Q Consensus 276 ~k~~g~~T~vLaAS~Rn~~~i~~--laG~D~lTi 307 (374)
.++.+ ..|++..+.+.+...+ .+|||.+.+
T Consensus 183 ik~~~--ipVIaG~V~t~e~A~~l~~aGAD~V~V 214 (368)
T PRK08649 183 IYELD--VPVIVGGCVTYTTALHLMRTGAAGVLV 214 (368)
T ss_pred HHHCC--CCEEEeCCCCHHHHHHHHHcCCCEEEE
Confidence 55543 4566656666666654 489999744
No 232
>PLN02493 probable peroxisomal (S)-2-hydroxy-acid oxidase
Probab=27.31 E-value=1.7e+02 Score=30.20 Aligned_cols=105 Identities=20% Similarity=0.248 Sum_probs=71.1
Q ss_pred cCChhHHHHHHHHHHcCceeEEeecCCHHHHHHHHHcCCcE--EEechhhhhhhhhcCCCCccchhhhccCCCcHHHHHH
Q 017271 193 PSTWQGIEASRLLESEGIQTHLTFVYSFAQAAAAAQAGASV--IQIFVGRLRDWARNHSGDPEIDDALKRGEDPALSLVS 270 (374)
Q Consensus 193 PaT~eGi~A~~~L~~eGI~vN~TlIFS~~QA~aaa~AGas~--ISpFVGRIdd~~~~~~~d~~~~~~~~~~~d~Gv~~v~ 270 (374)
+.||+=|+=++... ++++-+--|.+.+.|..|.++|+.. ||-.=||-.|+. -+.+....
T Consensus 210 ~~tW~di~wlr~~~--~~PiivKgV~~~~dA~~a~~~Gvd~I~VsnhGGrqld~~-----------------~~t~~~L~ 270 (367)
T PLN02493 210 TLSWKDVQWLQTIT--KLPILVKGVLTGEDARIAIQAGAAGIIVSNHGARQLDYV-----------------PATISALE 270 (367)
T ss_pred CCCHHHHHHHHhcc--CCCEEeecCCCHHHHHHHHHcCCCEEEECCCCCCCCCCc-----------------hhHHHHHH
Confidence 46897766666543 6788888899999999999999864 455555533321 12344444
Q ss_pred HHHHHHHHcCccHHHH-HhccCChhcHHH--hhCCcEecccHHHHHHHHhCC
Q 017271 271 KAYNYIHKYGHKSKLM-AAAVRNKQDLFS--LLGVDYIIAPLKVLQSLKESA 319 (374)
Q Consensus 271 ~iy~~~k~~g~~T~vL-aAS~Rn~~~i~~--laG~D~lTipp~ll~~L~~~~ 319 (374)
++.+.+ +.+..|+ -..+|+-.+++. .+|+|.+-+.-.++..+...+
T Consensus 271 ei~~av---~~~~~vi~dGGIr~G~Dv~KALALGA~aV~iGr~~l~~l~~~G 319 (367)
T PLN02493 271 EVVKAT---QGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVFSLAAEG 319 (367)
T ss_pred HHHHHh---CCCCeEEEeCCcCcHHHHHHHHHcCCCEEEEcHHHHHHHHhcC
Confidence 444332 3344454 567899999987 589999999988887776543
No 233
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=27.20 E-value=5.6e+02 Score=24.53 Aligned_cols=108 Identities=16% Similarity=0.150 Sum_probs=58.9
Q ss_pred cCCHHHHHHHHHHHHHHhcCCCCCCCcEEEEecC-ChhHHHHHHHHHHcCceeEEeec--CCHHHHHHHHHcC----CcE
Q 017271 161 AYDTHGIIRKVHDLLKLYSEIDVPPERLLFKIPS-TWQGIEASRLLESEGIQTHLTFV--YSFAQAAAAAQAG----ASV 233 (374)
Q Consensus 161 a~D~e~~I~eA~~L~~l~~~~gv~~~nVlIKIPa-T~eGi~A~~~L~~eGI~vN~TlI--FS~~QA~aaa~AG----as~ 233 (374)
.+.++..++-++.|.++ |+ +.|=+=.|. .+.-.+.++.|.+..=++.+..+ -...-...+.++| ...
T Consensus 16 ~~~~~~k~~i~~~L~~~----Gv--~~iEvg~~~~~~~~~~~~~~l~~~~~~~~~~~l~r~~~~~v~~a~~~~~~~~~~~ 89 (268)
T cd07940 16 SLTPEEKLEIARQLDEL----GV--DVIEAGFPAASPGDFEAVKRIAREVLNAEICGLARAVKKDIDAAAEALKPAKVDR 89 (268)
T ss_pred CCCHHHHHHHHHHHHHc----CC--CEEEEeCCCCCHHHHHHHHHHHHhCCCCEEEEEccCCHhhHHHHHHhCCCCCCCE
Confidence 45666666666555554 45 455555566 34445666667664322333322 2344555566777 888
Q ss_pred EEechhhhhhhhhcCCCCccchhhhccCCCcHHHHHHHHHHHHHHcCccH
Q 017271 234 IQIFVGRLRDWARNHSGDPEIDDALKRGEDPALSLVSKAYNYIHKYGHKS 283 (374)
Q Consensus 234 ISpFVGRIdd~~~~~~~d~~~~~~~~~~~d~Gv~~v~~iy~~~k~~g~~T 283 (374)
|..|++-=+-+..++.+ ...+.-+..+.++.++.++.|++.
T Consensus 90 i~i~~~~s~~~~~~~~~---------~~~~~~~~~~~~~i~~a~~~G~~v 130 (268)
T cd07940 90 IHTFIATSDIHLKYKLK---------KTREEVLERAVEAVEYAKSHGLDV 130 (268)
T ss_pred EEEEecCCHHHHHHHhC---------CCHHHHHHHHHHHHHHHHHcCCeE
Confidence 88887532222221111 111234677788888888887653
No 234
>KOG4201 consensus Anthranilate synthase component II [Amino acid transport and metabolism]
Probab=26.94 E-value=1.7e+02 Score=28.61 Aligned_cols=20 Identities=40% Similarity=0.433 Sum_probs=17.4
Q ss_pred HHHHHHHHHcCCcEEEechh
Q 017271 220 FAQAAAAAQAGASVIQIFVG 239 (374)
Q Consensus 220 ~~QA~aaa~AGas~ISpFVG 239 (374)
.+||++-++.||+.+|+.-.
T Consensus 94 ae~A~~Yak~GAs~iSVLTe 113 (289)
T KOG4201|consen 94 AEQALAYAKGGASCISVLTE 113 (289)
T ss_pred HHHHHHHHhcCceeeeeecC
Confidence 58999999999999998643
No 235
>PRK06267 hypothetical protein; Provisional
Probab=26.83 E-value=3e+02 Score=27.77 Aligned_cols=98 Identities=12% Similarity=0.071 Sum_probs=57.3
Q ss_pred hHHHHHHHHHHcCceeEEeecC----CHHHHHHHH----HcCCcEEEechhhhhhhhhcCCCCccchhhhccCCCcHHHH
Q 017271 197 QGIEASRLLESEGIQTHLTFVY----SFAQAAAAA----QAGASVIQIFVGRLRDWARNHSGDPEIDDALKRGEDPALSL 268 (374)
Q Consensus 197 eGi~A~~~L~~eGI~vN~TlIF----S~~QA~aaa----~AGas~ISpFVGRIdd~~~~~~~d~~~~~~~~~~~d~Gv~~ 268 (374)
+-+++++.+.+.||+++.+.++ +.++....+ +.++..+++++ + ....+.+ +.....+...-
T Consensus 154 d~~~~l~~ak~aGi~v~~g~IiGlgEt~ed~~~~l~~l~~l~~d~v~~~~--L----~P~pGTp-----~~~~~~~s~~e 222 (350)
T PRK06267 154 KIKEMLLKAKDLGLKTGITIILGLGETEDDIEKLLNLIEELDLDRITFYS--L----NPQKGTI-----FENKPSVTTLE 222 (350)
T ss_pred HHHHHHHHHHHcCCeeeeeEEEeCCCCHHHHHHHHHHHHHcCCCEEEEEe--e----eECCCCc-----CCCCCCCCHHH
Confidence 5688889999999999999888 455554433 45766543332 1 1111110 10011234556
Q ss_pred HHHHHHHHHHcCccHHHHHhccC----ChhcHHHhhCCcEec
Q 017271 269 VSKAYNYIHKYGHKSKLMAAAVR----NKQDLFSLLGVDYII 306 (374)
Q Consensus 269 v~~iy~~~k~~g~~T~vLaAS~R----n~~~i~~laG~D~lT 306 (374)
+.++..++|-.-++..+++++.+ ..+. .-++||+.+|
T Consensus 223 ~lr~ia~~Rl~lP~~~I~~~~~~~~l~~~~~-~~~aGaN~i~ 263 (350)
T PRK06267 223 YMNWVSSVRLNFPKIKIITGTWVDKLTNIGP-LIMSGSNVIT 263 (350)
T ss_pred HHHHHHHHHHHCCCCCcchhhHhHhcchhhH-HhhcCcceee
Confidence 66677777776667777666542 2222 3368999886
No 236
>PF01187 MIF: Macrophage migration inhibitory factor (MIF); InterPro: IPR001398 Macrophage migration inhibitory factor (MIF) is a key regulatory cytokine within innate and adaptive immune responses, capable of promoting and modulating the magnitude of the response []. MIF is released from T-cells and macrophages, and acts within the neuroendocrine system. MIF is capable of tautomerase activity, although its biological function has not been fully characterised. It is induced by glucocorticoid and is capable of overriding the anti-inflammatory actions of glucocorticoid []. MIF regulates cytokine secretion and the expression of receptors involved in the immune response. It can be taken up into target cells in order to interact with intracellular signalling molecules, inhibiting p53 function, and/or activating components of the mitogen-activated protein kinase and Jun-activation domain-binding protein-1 (Jab-1) []. MIF has been linked to various inflammatory diseases, such as rheumatoid arthritis and atherosclerosis []. The MIF homologue D-dopachrome tautomerase (4.1.1.84 from EC) is involved in detoxification through the conversion of dopaminechrome (and possibly norepinephrinechrome), the toxic quinine product of the neurotransmitter dopamine (and norepinephrine), to an indole derivative that can serve as a precursor to neuromelanin [, ].; PDB: 1UIZ_C 3FWT_A 1HFO_F 2WKB_D 3RF4_B 2OS5_A 3RF5_A 2XCZ_A 3FWU_A 3B64_A ....
Probab=26.27 E-value=1.8e+02 Score=24.29 Aligned_cols=30 Identities=17% Similarity=0.451 Sum_probs=22.9
Q ss_pred CHHHHHHHHHHHHHHh-cCCCCCCCcEEEEe
Q 017271 163 DTHGIIRKVHDLLKLY-SEIDVPPERLLFKI 192 (374)
Q Consensus 163 D~e~~I~eA~~L~~l~-~~~gv~~~nVlIKI 192 (374)
+.+.--+-+.+|.++. +++||+++|++|+.
T Consensus 68 ~~~~n~~~s~~i~~~l~~~LgIp~~Riyi~f 98 (114)
T PF01187_consen 68 DPEQNKKYSAAITEFLEEELGIPPDRIYINF 98 (114)
T ss_dssp SHHHHHHHHHHHHHHHHHHHT--GGGEEEEE
T ss_pred CHHHHHHHHHHHHHHHHHHhCCCcCceEEEE
Confidence 7777777888888866 67899999999984
No 237
>cd03314 MAL Methylaspartate ammonia lyase (3-methylaspartase, MAL) is a homodimeric enzyme, catalyzing the magnesium-dependent reversible alpha,beta-elimination of ammonia from L-threo-(2S,3S)-3-methylaspartic acid to mesaconic acid. This reaction is part of the main catabolic pathway for glutamate. MAL belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=26.12 E-value=7.3e+02 Score=25.49 Aligned_cols=105 Identities=19% Similarity=0.157 Sum_probs=73.1
Q ss_pred eEEEEecCCcc----C--CHHHHHHHHHHHHHHhcCCCCCCCcEEEEecCCh----hHHHHHHHHHHc------CceeEE
Q 017271 151 RVSTEVDARLA----Y--DTHGIIRKVHDLLKLYSEIDVPPERLLFKIPSTW----QGIEASRLLESE------GIQTHL 214 (374)
Q Consensus 151 ~VS~EVdp~la----~--D~e~~I~eA~~L~~l~~~~gv~~~nVlIKIPaT~----eGi~A~~~L~~e------GI~vN~ 214 (374)
.+.+=||++-+ + |.+..++-++.|.+.|+++ -.+|-=|... ..+..+++|.+. +|++-+
T Consensus 192 ~~~l~vDaN~~w~~~~~~~~~~A~~~~~~Le~~~~~~-----~~~iEqP~~~~d~~~~~~~~a~Lr~~~~~~~~~iPIa~ 266 (369)
T cd03314 192 HPILHIDVYGTIGQAFDPDPDRAADYLATLEEAAAPF-----PLRIEGPMDAGSREAQIERMAALRAELDRRGVGVRIVA 266 (369)
T ss_pred CCEEEEEcCCccccccCCCHHHHHHHHHHHHHhcCCC-----cEEEecCCCCCcchhhHHHHHHHHHHhhcCCCCceEEe
Confidence 45667776532 5 7776666666665543111 2567767755 347777778765 788877
Q ss_pred eec-CCHHHHHHHHHcC-CcEEEechhhhhhhhhcCCCCccchhhhccCCCcHHHHHHHHHHHHHHcCcc
Q 017271 215 TFV-YSFAQAAAAAQAG-ASVIQIFVGRLRDWARNHSGDPEIDDALKRGEDPALSLVSKAYNYIHKYGHK 282 (374)
Q Consensus 215 TlI-FS~~QA~aaa~AG-as~ISpFVGRIdd~~~~~~~d~~~~~~~~~~~d~Gv~~v~~iy~~~k~~g~~ 282 (374)
.-. +++.......+.| +.++.|-++|. -|+..++++.++-+.+|.+
T Consensus 267 dEs~~t~~d~~~li~~~a~div~~kl~k~----------------------GGIt~a~kia~lA~a~Gi~ 314 (369)
T cd03314 267 DEWCNTLEDIRDFADAGAAHMVQIKTPDL----------------------GGIDNTIDAVLYCKEHGVG 314 (369)
T ss_pred cCCcCCHHHHHHHHHhCCCCEEEecchhc----------------------CCHHHHHHHHHHHHHcCCc
Confidence 754 7899999988876 78999988876 2788899999988887644
No 238
>COG4948 L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily [Cell envelope biogenesis, outer membrane / General function prediction only]
Probab=25.98 E-value=6.8e+02 Score=25.08 Aligned_cols=110 Identities=19% Similarity=0.157 Sum_probs=81.3
Q ss_pred HHHhcCCCCeEEEEecCCccCCHHHHHHHHHHHHHHhcCCCCCCCcEEEEecCChhHHHHHHHHHHc-CceeEEe-ecCC
Q 017271 142 GDLAKMVPGRVSTEVDARLAYDTHGIIRKVHDLLKLYSEIDVPPERLLFKIPSTWQGIEASRLLESE-GIQTHLT-FVYS 219 (374)
Q Consensus 142 ~eil~~v~G~VS~EVdp~la~D~e~~I~eA~~L~~l~~~~gv~~~nVlIKIPaT~eGi~A~~~L~~e-GI~vN~T-lIFS 219 (374)
+.+.+.++..+.+-||++-+.+.++-++-++++... .-.+|-=|.-++=+...++|.+. .+++.+. -+||
T Consensus 179 ~avRe~~g~~~~l~iDan~~~~~~~A~~~~~~l~~~--------~l~~iEeP~~~~d~~~~~~l~~~~~~PIa~gEs~~~ 250 (372)
T COG4948 179 RALREAVGDDVRLMVDANGGWTLEEAIRLARALEEY--------GLEWIEEPLPPDDLEGLRELRAATSTPIAAGESVYT 250 (372)
T ss_pred HHHHHHhCCCceEEEeCCCCcCHHHHHHHHHHhccc--------CcceEECCCCccCHHHHHHHHhcCCCCEecCccccc
Confidence 355555666899999999889887555555555443 23667778888889999999886 3777664 5899
Q ss_pred HHHHHHHHHcC-CcEEEechhhhhhhhhcCCCCccchhhhccCCCcHHHHHHHHHHHHHHcCc
Q 017271 220 FAQAAAAAQAG-ASVIQIFVGRLRDWARNHSGDPEIDDALKRGEDPALSLVSKAYNYIHKYGH 281 (374)
Q Consensus 220 ~~QA~aaa~AG-as~ISpFVGRIdd~~~~~~~d~~~~~~~~~~~d~Gv~~v~~iy~~~k~~g~ 281 (374)
..+.....+.| ++++.|=+.|+ -|+.-+++|-.+.+.++.
T Consensus 251 ~~~~~~l~~~~a~div~~d~~~~----------------------GGite~~kia~~A~~~~~ 291 (372)
T COG4948 251 RWDFRRLLEAGAVDIVQPDLARV----------------------GGITEALKIAALAEGFGV 291 (372)
T ss_pred HHHHHHHHHcCCCCeecCCcccc----------------------CCHHHHHHHHHHHHHhCC
Confidence 99999999998 67887766663 278888888887775543
No 239
>PRK06559 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=25.95 E-value=45 Score=33.29 Aligned_cols=94 Identities=22% Similarity=0.240 Sum_probs=57.4
Q ss_pred CcEEEEecCCh-hH--HHHHHHHHHc---CceeEEeecCCHHHHHHHHHcCCcEEEechhhhhhhhhcCCCCccchhhhc
Q 017271 186 ERLLFKIPSTW-QG--IEASRLLESE---GIQTHLTFVYSFAQAAAAAQAGASVIQIFVGRLRDWARNHSGDPEIDDALK 259 (374)
Q Consensus 186 ~nVlIKIPaT~-eG--i~A~~~L~~e---GI~vN~TlIFS~~QA~aaa~AGas~ISpFVGRIdd~~~~~~~d~~~~~~~~ 259 (374)
+-||||=---+ .| .+|++.+.+. ..++-+ -+=|++|+..|+++|+.+|-. |.+
T Consensus 168 D~iLIkdNHi~~~g~i~~av~~~r~~~~~~~kIeV-Ev~tleea~~a~~agaDiImL------Dnm-------------- 226 (290)
T PRK06559 168 DAIMLKDNHIAAVGSVQKAIAQARAYAPFVKMVEV-EVESLAAAEEAAAAGADIIML------DNM-------------- 226 (290)
T ss_pred ceEEEcHHHHHhhccHHHHHHHHHHhCCCCCeEEE-ECCCHHHHHHHHHcCCCEEEE------CCC--------------
Confidence 45888822111 22 3556666554 233333 347999999999999988732 211
Q ss_pred cCCCcHHHHHHHHHHHHHHcCccHHHHHhccCChhcHHH--hhCCcEeccc
Q 017271 260 RGEDPALSLVSKAYNYIHKYGHKSKLMAAAVRNKQDLFS--LLGVDYIIAP 308 (374)
Q Consensus 260 ~~~d~Gv~~v~~iy~~~k~~g~~T~vLaAS~Rn~~~i~~--laG~D~lTip 308 (374)
-.+.++++.++++. +..+-++..-|.+++.+ ..|+|++.+.
T Consensus 227 -----spe~l~~av~~~~~---~~~leaSGGI~~~ni~~yA~tGVD~Is~g 269 (290)
T PRK06559 227 -----SLEQIEQAITLIAG---RSRIECSGNIDMTTISRFRGLAIDYVSSG 269 (290)
T ss_pred -----CHHHHHHHHHHhcC---ceEEEEECCCCHHHHHHHHhcCCCEEEeC
Confidence 24456666665543 34344555668888876 6899998655
No 240
>PRK10605 N-ethylmaleimide reductase; Provisional
Probab=25.82 E-value=5.3e+02 Score=26.23 Aligned_cols=97 Identities=8% Similarity=0.001 Sum_probs=54.3
Q ss_pred hhHHHHHHHHhcCC-CCeEEEEecCCc-------cCCHHHHHHHHHHHHHHhcCCCCCCCcEEEEecCCh--h--HHHHH
Q 017271 135 KALVNVGGDLAKMV-PGRVSTEVDARL-------AYDTHGIIRKVHDLLKLYSEIDVPPERLLFKIPSTW--Q--GIEAS 202 (374)
Q Consensus 135 ~~~v~~g~eil~~v-~G~VS~EVdp~l-------a~D~e~~I~eA~~L~~l~~~~gv~~~nVlIKIPaT~--e--Gi~A~ 202 (374)
|.+.++...+.+.+ +..|.+-++|.- ..+.+++ +.+++++.++.|+ +-+-|..|... . .....
T Consensus 210 Rf~~Eiv~aVr~~vg~~~igvRis~~~~~~~~~~G~~~~e~---~~~~~~~L~~~gi--D~i~vs~~~~~~~~~~~~~~~ 284 (362)
T PRK10605 210 RLVLEVVDAGIAEWGADRIGIRISPLGTFNNVDNGPNEEAD---ALYLIEQLGKRGI--AYLHMSEPDWAGGEPYSDAFR 284 (362)
T ss_pred HHHHHHHHHHHHHcCCCeEEEEECCccccccCCCCCCHHHH---HHHHHHHHHHcCC--CEEEeccccccCCccccHHHH
Confidence 34444444444444 236777666531 1333431 4445555554555 33334433111 1 13344
Q ss_pred HHHHHc-CceeEEeecCCHHHHHHHHHcC-CcEEEe
Q 017271 203 RLLESE-GIQTHLTFVYSFAQAAAAAQAG-ASVIQI 236 (374)
Q Consensus 203 ~~L~~e-GI~vN~TlIFS~~QA~aaa~AG-as~ISp 236 (374)
+++++. ++++-++-.|+++++..+.+.| +.+|+.
T Consensus 285 ~~ik~~~~~pv~~~G~~~~~~ae~~i~~G~~D~V~~ 320 (362)
T PRK10605 285 EKVRARFHGVIIGAGAYTAEKAETLIGKGLIDAVAF 320 (362)
T ss_pred HHHHHHCCCCEEEeCCCCHHHHHHHHHcCCCCEEEE
Confidence 555544 7889999999999999999988 777664
No 241
>TIGR01211 ELP3 histone acetyltransferase, ELP3 family. The Saccharomyces cerevisiae member YPL086C has been characterized in vitro as an N-terminal acetyltransferase for all four core histones. It is a component of the RNA polymerase II holoenzyme, designated Elp3p for Elongator Protein 3. Members of this family are found in eukaryotes and archaea. These proteins are part of the larger set of GNAT acetyltransferases.
Probab=25.80 E-value=1.5e+02 Score=31.91 Aligned_cols=86 Identities=14% Similarity=0.303 Sum_probs=56.1
Q ss_pred eEEEEecCCccCCHHHHHHHHHHHHHHhcCCCCCCCcEEEEecCCh--------------hHHHHHHHHHHcCceeEEee
Q 017271 151 RVSTEVDARLAYDTHGIIRKVHDLLKLYSEIDVPPERLLFKIPSTW--------------QGIEASRLLESEGIQTHLTF 216 (374)
Q Consensus 151 ~VS~EVdp~la~D~e~~I~eA~~L~~l~~~~gv~~~nVlIKIPaT~--------------eGi~A~~~L~~eGI~vN~Tl 216 (374)
-+++|++|+...+ +.++. |. +.|+ .+|-+-|=+.. +-++|++.|.+.|+++|+.+
T Consensus 194 gitiEtRPD~i~~--e~L~~---L~----~~G~--~rVslGVQS~~d~VL~~inRght~~~v~~Ai~~lr~~G~~v~~~L 262 (522)
T TIGR01211 194 GLTIETRPDYCRE--EHIDR---ML----KLGA--TRVELGVQTIYNDILERTKRGHTVRDVVEATRLLRDAGLKVVYHI 262 (522)
T ss_pred EEEEEEcCCcCCH--HHHHH---HH----HcCC--CEEEEECccCCHHHHHHhCCCCCHHHHHHHHHHHHHcCCeEEEEe
Confidence 4789999975433 22222 33 3345 56777666554 34789999999999999999
Q ss_pred cCCHH-----HHH----HHHH---cCCcEEEech------hhhhhhhhc
Q 017271 217 VYSFA-----QAA----AAAQ---AGASVIQIFV------GRLRDWARN 247 (374)
Q Consensus 217 IFS~~-----QA~----aaa~---AGas~ISpFV------GRIdd~~~~ 247 (374)
+|.+. +.. .+.+ .++..+++|- ..+.+++++
T Consensus 263 M~GLPgqt~e~~~~t~~~l~~~~~l~pD~Ikiypl~V~~gT~L~~~~~~ 311 (522)
T TIGR01211 263 MPGLPGSSFERDLEMFREIFEDPRFKPDMLKIYPTLVTRGTELYELWKR 311 (522)
T ss_pred ecCCCCCCHHHHHHHHHHHHhccCCCcCEEEEecceeeCCCHHHHHHHc
Confidence 99853 222 2222 4788888887 566666643
No 242
>PLN02826 dihydroorotate dehydrogenase
Probab=25.66 E-value=3.1e+02 Score=28.60 Aligned_cols=45 Identities=24% Similarity=0.117 Sum_probs=35.4
Q ss_pred HHHHHHHHHHc---Ccee-EEeecCCHHHHHHHHHcCCcEEEechhhhh
Q 017271 198 GIEASRLLESE---GIQT-HLTFVYSFAQAAAAAQAGASVIQIFVGRLR 242 (374)
Q Consensus 198 Gi~A~~~L~~e---GI~v-N~TlIFS~~QA~aaa~AGas~ISpFVGRId 242 (374)
.++.++++.+. .|.+ =+.-|++.++|+....|||+.+..|-+-+.
T Consensus 327 sl~~v~~l~~~~~~~ipIIgvGGI~sg~Da~e~i~AGAs~VQv~Ta~~~ 375 (409)
T PLN02826 327 STEVLREMYRLTRGKIPLVGCGGVSSGEDAYKKIRAGASLVQLYTAFAY 375 (409)
T ss_pred HHHHHHHHHHHhCCCCcEEEECCCCCHHHHHHHHHhCCCeeeecHHHHh
Confidence 47777877664 2443 467899999999999999999999877663
No 243
>PRK07534 methionine synthase I; Validated
Probab=25.61 E-value=7.1e+02 Score=25.16 Aligned_cols=87 Identities=13% Similarity=0.060 Sum_probs=60.5
Q ss_pred hhhhhhhHHHHHHHHhcCC--CCeEEEEecCCcc-------CCHHHHHHHHHHHHHHhcCCCCCCCcEEEE-ecCChhHH
Q 017271 130 SCFFNKALVNVGGDLAKMV--PGRVSTEVDARLA-------YDTHGIIRKVHDLLKLYSEIDVPPERLLFK-IPSTWQGI 199 (374)
Q Consensus 130 a~~~~~~~v~~g~eil~~v--~G~VS~EVdp~la-------~D~e~~I~eA~~L~~l~~~~gv~~~nVlIK-IPaT~eGi 199 (374)
...+.+..++++++..+.. +.+|.--|-|.-+ .+.++..+.-+..++.+.+-|+ +-+++- +|...|-.
T Consensus 83 ~~~l~~~av~lAr~a~~~~~~~~~VaGsIGP~g~~l~~~~~~~~~e~~~~~~~qi~~l~~~gv--D~l~~ET~p~l~E~~ 160 (336)
T PRK07534 83 VHELNRAAAEIAREVADKAGRKVIVAGSVGPTGEIMEPMGALTHALAVEAFHEQAEGLKAGGA--DVLWVETISAPEEIR 160 (336)
T ss_pred HHHHHHHHHHHHHHHHHhcCCccEEEEecCCCccccCCCCCCCHHHHHHHHHHHHHHHHhCCC--CEEEEeccCCHHHHH
Confidence 3456677788888877542 4467777766432 2455666666666666655666 677774 99999998
Q ss_pred HHHHHHHHcCceeEEeecC
Q 017271 200 EASRLLESEGIQTHLTFVY 218 (374)
Q Consensus 200 ~A~~~L~~eGI~vN~TlIF 218 (374)
.+++.++..|+++-+++.|
T Consensus 161 a~~~~~~~~~~Pv~vSft~ 179 (336)
T PRK07534 161 AAAEAAKLAGMPWCGTMSF 179 (336)
T ss_pred HHHHHHHHcCCeEEEEEEE
Confidence 8888888779888877766
No 244
>PRK09016 quinolinate phosphoribosyltransferase; Validated
Probab=25.47 E-value=45 Score=33.44 Aligned_cols=94 Identities=19% Similarity=0.134 Sum_probs=57.4
Q ss_pred CcEEEE---ecCChhHHHHHHHHHHc--CceeEEeecCCHHHHHHHHHcCCcEEEechhhhhhhhhcCCCCccchhhhcc
Q 017271 186 ERLLFK---IPSTWQGIEASRLLESE--GIQTHLTFVYSFAQAAAAAQAGASVIQIFVGRLRDWARNHSGDPEIDDALKR 260 (374)
Q Consensus 186 ~nVlIK---IPaT~eGi~A~~~L~~e--GI~vN~TlIFS~~QA~aaa~AGas~ISpFVGRIdd~~~~~~~d~~~~~~~~~ 260 (374)
+-|||| |-+...=-+|++.+.+. ..++ .--+=|++|+..|+++|+.+|- +|.
T Consensus 180 d~iLikdNHi~~~G~i~~av~~~r~~~~~~kI-eVEv~sleea~ea~~~gaDiI~-----LDn----------------- 236 (296)
T PRK09016 180 DAFLIKENHIIASGSIRQAVEKAFWLHPDVPV-EVEVENLDELDQALKAGADIIM-----LDN----------------- 236 (296)
T ss_pred hhhccCHHHHHHhCcHHHHHHHHHHhCCCCCE-EEEeCCHHHHHHHHHcCCCEEE-----eCC-----------------
Confidence 457888 43322112444444433 2333 3456699999999999997763 111
Q ss_pred CCCcHHHHHHHHHHHHHHcCccHHHHHhccCChhcHHH--hhCCcEeccc
Q 017271 261 GEDPALSLVSKAYNYIHKYGHKSKLMAAAVRNKQDLFS--LLGVDYIIAP 308 (374)
Q Consensus 261 ~~d~Gv~~v~~iy~~~k~~g~~T~vLaAS~Rn~~~i~~--laG~D~lTip 308 (374)
--...++++.++.+. +..+.++..-+.+++.+ .+|+|++.+.
T Consensus 237 ---~s~e~~~~av~~~~~---~~~ieaSGGI~~~ni~~yA~tGVD~Is~g 280 (296)
T PRK09016 237 ---FTTEQMREAVKRTNG---RALLEVSGNVTLETLREFAETGVDFISVG 280 (296)
T ss_pred ---CChHHHHHHHHhhcC---CeEEEEECCCCHHHHHHHHhcCCCEEEeC
Confidence 123556666665432 45555566678888876 6899998655
No 245
>PLN02925 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
Probab=25.08 E-value=4.8e+02 Score=29.53 Aligned_cols=74 Identities=9% Similarity=0.060 Sum_probs=53.0
Q ss_pred CeEEEEecCC-ccCCHHHHHHHHHHHHHHhcCCCCCCCcEEEEecCCh--hHHHHHHH-HHHcC--ceeEEeecCCHHHH
Q 017271 150 GRVSTEVDAR-LAYDTHGIIRKVHDLLKLYSEIDVPPERLLFKIPSTW--QGIEASRL-LESEG--IQTHLTFVYSFAQA 223 (374)
Q Consensus 150 G~VS~EVdp~-la~D~e~~I~eA~~L~~l~~~~gv~~~nVlIKIPaT~--eGi~A~~~-L~~eG--I~vN~TlIFS~~QA 223 (374)
-+|.+|-.-. --.|++++++|.++|.+..- +=|-|-+|.-. +.++.|++ |.++| |++-+-.=|.+.-|
T Consensus 94 ~PI~VQSMt~t~T~D~eatv~Qi~~l~~aGc------eiVRvtv~~~~~A~al~~I~~~L~~~g~~iPLVADIHF~~~~A 167 (733)
T PLN02925 94 HPIRIQTMTTTDTKDVEATVDQVMRIADKGA------DIVRITVQGKKEADACFEIKNTLVQKGYNIPLVADIHFAPSVA 167 (733)
T ss_pred CceEEEecCCCCcccHHHHHHHHHHHHHcCC------CEEEEcCCCHHHHHhHHHHHHHHhhcCCCCCEEEecCCCHHHH
Confidence 3888885332 34689999999999988742 45666677655 34555544 56666 56677788999999
Q ss_pred HHHHHc
Q 017271 224 AAAAQA 229 (374)
Q Consensus 224 ~aaa~A 229 (374)
..|+++
T Consensus 168 l~a~~~ 173 (733)
T PLN02925 168 LRVAEC 173 (733)
T ss_pred HHHHHh
Confidence 999987
No 246
>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.
Probab=25.08 E-value=3.3e+02 Score=24.33 Aligned_cols=113 Identities=11% Similarity=0.090 Sum_probs=62.1
Q ss_pred cEEEEecCChhHHHHHHHHHHcCceeEEeec-CCHHHHHHHHHcCCcEEEechhhhhhhhhcCCCCccchhhhccCCCcH
Q 017271 187 RLLFKIPSTWQGIEASRLLESEGIQTHLTFV-YSFAQAAAAAQAGASVIQIFVGRLRDWARNHSGDPEIDDALKRGEDPA 265 (374)
Q Consensus 187 nVlIKIPaT~eGi~A~~~L~~eGI~vN~TlI-FS~~QA~aaa~AGas~ISpFVGRIdd~~~~~~~d~~~~~~~~~~~d~G 265 (374)
-|.|=.-.+.+-.+.++.+.+.|+.+=+++- -+..+.......++.|+.. .+. .. +. .+. .. ...+
T Consensus 83 gv~vh~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~d~i~~-~~~-~~-g~--tg~-----~~---~~~~ 149 (211)
T cd00429 83 IITFHAEATDHLHRTIQLIKELGMKAGVALNPGTPVEVLEPYLDEVDLVLV-MSV-NP-GF--GGQ-----KF---IPEV 149 (211)
T ss_pred EEEECccchhhHHHHHHHHHHCCCeEEEEecCCCCHHHHHHHHhhCCEEEE-EEE-CC-CC--CCc-----cc---CHHH
Confidence 3334333345556778888888888766652 1233333333334666642 121 00 00 000 00 1235
Q ss_pred HHHHHHHHHHHHHcCccHHHHHhccCChhcHHH--hhCCcEecccHHHH
Q 017271 266 LSLVSKAYNYIHKYGHKSKLMAAAVRNKQDLFS--LLGVDYIIAPLKVL 312 (374)
Q Consensus 266 v~~v~~iy~~~k~~g~~T~vLaAS~Rn~~~i~~--laG~D~lTipp~ll 312 (374)
...++++.++..+++++..++++..-+.+++.+ ..|+|.+.+.-.+.
T Consensus 150 ~~~i~~~~~~~~~~~~~~pi~v~GGI~~env~~~~~~gad~iivgsai~ 198 (211)
T cd00429 150 LEKIRKLRELIPENNLNLLIEVDGGINLETIPLLAEAGADVLVAGSALF 198 (211)
T ss_pred HHHHHHHHHHHHhcCCCeEEEEECCCCHHHHHHHHHcCCCEEEECHHHh
Confidence 666777766665444445565666667788876 37999998877665
No 247
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=24.77 E-value=4.8e+02 Score=25.90 Aligned_cols=93 Identities=20% Similarity=0.226 Sum_probs=49.5
Q ss_pred HHHHHHHHhcCC--CCeEEEEecCC----ccCCHHHHHHHHHHHHHHhcCCCCCCCcEEE---------EecCC-hhHHH
Q 017271 137 LVNVGGDLAKMV--PGRVSTEVDAR----LAYDTHGIIRKVHDLLKLYSEIDVPPERLLF---------KIPST-WQGIE 200 (374)
Q Consensus 137 ~v~~g~eil~~v--~G~VS~EVdp~----la~D~e~~I~eA~~L~~l~~~~gv~~~nVlI---------KIPaT-~eGi~ 200 (374)
..++.+.+.+.+ +-.|.+-+++. -..+.++++ ++.+..++.|++ -|-| +.|.. ..-+.
T Consensus 207 ~~eiv~aIR~~vG~d~~v~vri~~~~~~~~g~~~~e~~----~ia~~Le~~gvd--~iev~~g~~~~~~~~~~~~~~~~~ 280 (336)
T cd02932 207 LLEVVDAVRAVWPEDKPLFVRISATDWVEGGWDLEDSV----ELAKALKELGVD--LIDVSSGGNSPAQKIPVGPGYQVP 280 (336)
T ss_pred HHHHHHHHHHHcCCCceEEEEEcccccCCCCCCHHHHH----HHHHHHHHcCCC--EEEECCCCCCcccccCCCccccHH
Confidence 344455555555 33677776642 233444444 444444444442 2221 01221 11245
Q ss_pred HHHHHHHc-CceeEEee-cCCHHHHHHHHHcC-CcEEE
Q 017271 201 ASRLLESE-GIQTHLTF-VYSFAQAAAAAQAG-ASVIQ 235 (374)
Q Consensus 201 A~~~L~~e-GI~vN~Tl-IFS~~QA~aaa~AG-as~IS 235 (374)
.++++.+. +|++-++- +++++++..+.+.| +++|+
T Consensus 281 ~~~~ir~~~~iPVi~~G~i~t~~~a~~~l~~g~aD~V~ 318 (336)
T cd02932 281 FAERIRQEAGIPVIAVGLITDPEQAEAILESGRADLVA 318 (336)
T ss_pred HHHHHHhhCCCCEEEeCCCCCHHHHHHHHHcCCCCeeh
Confidence 55556554 67776653 56999999999988 66654
No 248
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=24.59 E-value=2.6e+02 Score=29.79 Aligned_cols=127 Identities=19% Similarity=0.230 Sum_probs=77.9
Q ss_pred HHHHHHHHHHHhcCCCCCCCcEEEEecCCh--hHHHHHHHHHHc--CceeEEeecCCHHHHHHHHHcCCcEEEechhh--
Q 017271 167 IIRKVHDLLKLYSEIDVPPERLLFKIPSTW--QGIEASRLLESE--GIQTHLTFVYSFAQAAAAAQAGASVIQIFVGR-- 240 (374)
Q Consensus 167 ~I~eA~~L~~l~~~~gv~~~nVlIKIPaT~--eGi~A~~~L~~e--GI~vN~TlIFS~~QA~aaa~AGas~ISpFVGR-- 240 (374)
..+.++.|.+. |+ +-|.|-+.--+ .=++.+++++++ ++.+-+-=|=+.++|..+.+||+..|.+=+|-
T Consensus 228 ~~~~a~~Lv~a----Gv--d~i~~D~a~~~~~~~~~~i~~ik~~~p~~~v~agnv~t~~~a~~l~~aGad~v~vgig~gs 301 (479)
T PRK07807 228 VAAKARALLEA----GV--DVLVVDTAHGHQEKMLEALRAVRALDPGVPIVAGNVVTAEGTRDLVEAGADIVKVGVGPGA 301 (479)
T ss_pred HHHHHHHHHHh----CC--CEEEEeccCCccHHHHHHHHHHHHHCCCCeEEeeccCCHHHHHHHHHcCCCEEEECccCCc
Confidence 33444445553 34 33555433322 236677888876 57776667889999999999999999866654
Q ss_pred hhhhhhcCCCCccchhhhccCCCcHHHHHHHHHHHHHHcCccHHHHH-hccCChhcHHH--hhCCcEecccHHHH
Q 017271 241 LRDWARNHSGDPEIDDALKRGEDPALSLVSKAYNYIHKYGHKSKLMA-AAVRNKQDLFS--LLGVDYIIAPLKVL 312 (374)
Q Consensus 241 Idd~~~~~~~d~~~~~~~~~~~d~Gv~~v~~iy~~~k~~g~~T~vLa-AS~Rn~~~i~~--laG~D~lTipp~ll 312 (374)
|.... .+..-..|=+..+.++.+..++++ ..||+ -.+++..++.. .+|+|.+.+.-.+.
T Consensus 302 ictt~-----------~~~~~~~p~~~av~~~~~~~~~~~--~~via~ggi~~~~~~~~al~~ga~~v~~g~~~a 363 (479)
T PRK07807 302 MCTTR-----------MMTGVGRPQFSAVLECAAAARELG--AHVWADGGVRHPRDVALALAAGASNVMIGSWFA 363 (479)
T ss_pred ccccc-----------cccCCchhHHHHHHHHHHHHHhcC--CcEEecCCCCCHHHHHHHHHcCCCeeeccHhhc
Confidence 33221 000001244555555555555554 44554 56778888887 48999998875544
No 249
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=24.46 E-value=3.2e+02 Score=27.52 Aligned_cols=99 Identities=16% Similarity=0.124 Sum_probs=53.1
Q ss_pred hhHHHHHHHHhcCCCCeEEEEecCCccCCHHHHHHHHHHHHHHhcCCCCCCCcEEEEecC------C-hhH--HHHHHHH
Q 017271 135 KALVNVGGDLAKMVPGRVSTEVDARLAYDTHGIIRKVHDLLKLYSEIDVPPERLLFKIPS------T-WQG--IEASRLL 205 (374)
Q Consensus 135 ~~~v~~g~eil~~v~G~VS~EVdp~la~D~e~~I~eA~~L~~l~~~~gv~~~nVlIKIPa------T-~eG--i~A~~~L 205 (374)
+.+.++..++.+.++.+|.+-+++.-..+---.++++.++.+..++.|+ +-|-|-... . ..| ...++++
T Consensus 193 Rf~~eii~~ir~~~~~~v~vRis~~d~~~~G~~~~e~~~i~~~l~~~gv--D~i~vs~g~~~~~~~~~~~~~~~~~~~~i 270 (337)
T PRK13523 193 RFLREIIDAVKEVWDGPLFVRISASDYHPGGLTVQDYVQYAKWMKEQGV--DLIDVSSGAVVPARIDVYPGYQVPFAEHI 270 (337)
T ss_pred HHHHHHHHHHHHhcCCCeEEEecccccCCCCCCHHHHHHHHHHHHHcCC--CEEEeCCCCCCCCCCCCCccccHHHHHHH
Confidence 3444455555555677788877653111000123455555555555555 333332211 1 123 4556666
Q ss_pred HHc-CceeEEe-ecCCHHHHHHHHHcC-CcEEE
Q 017271 206 ESE-GIQTHLT-FVYSFAQAAAAAQAG-ASVIQ 235 (374)
Q Consensus 206 ~~e-GI~vN~T-lIFS~~QA~aaa~AG-as~IS 235 (374)
.+. +|+|-++ -+.+++++..+.+.| ++.|+
T Consensus 271 k~~~~ipVi~~G~i~~~~~a~~~l~~g~~D~V~ 303 (337)
T PRK13523 271 REHANIATGAVGLITSGAQAEEILQNNRADLIF 303 (337)
T ss_pred HhhcCCcEEEeCCCCCHHHHHHHHHcCCCChHH
Confidence 654 6776544 456888899998887 66543
No 250
>PRK02048 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Provisional
Probab=24.36 E-value=4.2e+02 Score=29.37 Aligned_cols=85 Identities=15% Similarity=0.160 Sum_probs=55.3
Q ss_pred CeEEEEecCC-ccCCHHHHHHHHHHHHHHhcCCCCCCCcEEEEecCCh--hHHHHHH-HHHHcC--ceeEEeecCCHHHH
Q 017271 150 GRVSTEVDAR-LAYDTHGIIRKVHDLLKLYSEIDVPPERLLFKIPSTW--QGIEASR-LLESEG--IQTHLTFVYSFAQA 223 (374)
Q Consensus 150 G~VS~EVdp~-la~D~e~~I~eA~~L~~l~~~~gv~~~nVlIKIPaT~--eGi~A~~-~L~~eG--I~vN~TlIFS~~QA 223 (374)
-+|++|-... --.|++++++|.++|.+..- +=|=|-+|.-. +.++.++ .|.++| |++-+-.=|.+.-|
T Consensus 25 ~PI~vQSMt~t~T~D~~atv~Qi~~l~~aGc------eiVRvtv~~~~~a~~l~~I~~~l~~~G~~iPLVADIHF~~~~A 98 (611)
T PRK02048 25 NPIRIQSMTNTSTMDTEACVAQAKRIIDAGG------EYVRLTTQGVREAENLMNINIGLRSQGYMVPLVADVHFNPKVA 98 (611)
T ss_pred CceEEEecCCCCcccHHHHHHHHHHHHHcCC------CEEEEcCCCHHHHHhHHHHHHHHhhcCCCCCEEEecCCCcHHH
Confidence 3888985332 34689999999999988742 44666666544 2344443 233445 56667778999999
Q ss_pred HHHHHcCCcEEEechhhh
Q 017271 224 AAAAQAGASVIQIFVGRL 241 (374)
Q Consensus 224 ~aaa~AGas~ISpFVGRI 241 (374)
..|+++ +.=|=.-=|-+
T Consensus 99 ~~a~~~-v~kiRINPGN~ 115 (611)
T PRK02048 99 DVAAQY-AEKVRINPGNY 115 (611)
T ss_pred HHHHHh-hCCEEECCCcC
Confidence 999987 44333333333
No 251
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=24.27 E-value=3.6e+02 Score=26.21 Aligned_cols=117 Identities=18% Similarity=0.120 Sum_probs=60.1
Q ss_pred CCHHHHHHHHHHHHHHhcCCCCCCCcEEEEecCCh---------hHHHHHHHHHHcCceeEEeecCC-------------
Q 017271 162 YDTHGIIRKVHDLLKLYSEIDVPPERLLFKIPSTW---------QGIEASRLLESEGIQTHLTFVYS------------- 219 (374)
Q Consensus 162 ~D~e~~I~eA~~L~~l~~~~gv~~~nVlIKIPaT~---------eGi~A~~~L~~eGI~vN~TlIFS------------- 219 (374)
+..+++++-|+.|.++ |+ +-+=+-.|++. .-.++++++.+.+-++.+..+.-
T Consensus 18 ~~~~~~~~ia~~L~~~----Gv--~~iE~G~~a~~~~~~~~~~~~~~e~i~~~~~~~~~~~l~~~~r~~~~~~~~~~p~~ 91 (275)
T cd07937 18 MRTEDMLPIAEALDEA----GF--FSLEVWGGATFDVCMRFLNEDPWERLRELRKAMPNTPLQMLLRGQNLVGYRHYPDD 91 (275)
T ss_pred ccHHHHHHHHHHHHHc----CC--CEEEccCCcchhhhccccCCCHHHHHHHHHHhCCCCceehhcccccccCccCCCcH
Confidence 4566666666655554 34 34444456532 22555566655544444443321
Q ss_pred --HHHHHHHHHcCCcEEEechhhhhhhhhcCCCCccchhhhccCCCcHHHHHHHHHHHHHHcCccHHH--H--HhccCCh
Q 017271 220 --FAQAAAAAQAGASVIQIFVGRLRDWARNHSGDPEIDDALKRGEDPALSLVSKAYNYIHKYGHKSKL--M--AAAVRNK 293 (374)
Q Consensus 220 --~~QA~aaa~AGas~ISpFVGRIdd~~~~~~~d~~~~~~~~~~~d~Gv~~v~~iy~~~k~~g~~T~v--L--aAS~Rn~ 293 (374)
..-...+.+.|..+|-.|+.-- -+..+.++.++.|++|.+... + .++--+.
T Consensus 92 ~~~~di~~~~~~g~~~iri~~~~~-----------------------~~~~~~~~i~~ak~~G~~v~~~i~~~~~~~~~~ 148 (275)
T cd07937 92 VVELFVEKAAKNGIDIFRIFDALN-----------------------DVRNLEVAIKAVKKAGKHVEGAICYTGSPVHTL 148 (275)
T ss_pred HHHHHHHHHHHcCCCEEEEeecCC-----------------------hHHHHHHHHHHHHHCCCeEEEEEEecCCCCCCH
Confidence 2222345566777666554211 156677777888888876542 1 1222333
Q ss_pred hcHHH------hhCCcEecc
Q 017271 294 QDLFS------LLGVDYIIA 307 (374)
Q Consensus 294 ~~i~~------laG~D~lTi 307 (374)
+.+.+ .+|+|.+.+
T Consensus 149 ~~~~~~~~~~~~~Ga~~i~l 168 (275)
T cd07937 149 EYYVKLAKELEDMGADSICI 168 (275)
T ss_pred HHHHHHHHHHHHcCCCEEEE
Confidence 43332 478887643
No 252
>PRK13561 putative diguanylate cyclase; Provisional
Probab=24.14 E-value=8.3e+02 Score=26.18 Aligned_cols=133 Identities=17% Similarity=0.217 Sum_probs=78.2
Q ss_pred CCeEEEEecCCccCCHHHHHHHHHHHHHHhcCCCCCCCcEEEEecCCh------hHHHHHHHHHHcCceeEEeec---CC
Q 017271 149 PGRVSTEVDARLAYDTHGIIRKVHDLLKLYSEIDVPPERLLFKIPSTW------QGIEASRLLESEGIQTHLTFV---YS 219 (374)
Q Consensus 149 ~G~VS~EVdp~la~D~e~~I~eA~~L~~l~~~~gv~~~nVlIKIPaT~------eGi~A~~~L~~eGI~vN~TlI---FS 219 (374)
+.+|++-+++.--.|. ..++. +..+.++.|++++++++-|+.+- .-...++.|.+.|+++-+-=. |+
T Consensus 485 ~~~~~iNlS~~~l~~~-~f~~~---l~~~l~~~~~~~~~l~lEi~E~~~~~~~~~~~~~~~~l~~~G~~i~lddfG~g~s 560 (651)
T PRK13561 485 MLPLSVNLSALQLMHP-NMVAD---MLELLTRYRIQPGTLILEVTESRRIDDPHAAVAILRPLRNAGVRVALDDFGMGYA 560 (651)
T ss_pred CceEEEECCHHHHCCc-hHHHH---HHHHHHHcCCChHHEEEEEchhhhhcCHHHHHHHHHHHHHCCCEEEEECCCCCcc
Confidence 4578998887644443 33444 55555667899999999999864 346778999999999865321 11
Q ss_pred HHHHHHH-HHcCCcEEEechhhhhhhhhcCCCCccchhhhccCCCcHHHHHHHHHHHHHHcCccHHHHHhccCChhcHHH
Q 017271 220 FAQAAAA-AQAGASVIQIFVGRLRDWARNHSGDPEIDDALKRGEDPALSLVSKAYNYIHKYGHKSKLMAAAVRNKQDLFS 298 (374)
Q Consensus 220 ~~QA~aa-a~AGas~ISpFVGRIdd~~~~~~~d~~~~~~~~~~~d~Gv~~v~~iy~~~k~~g~~T~vLaAS~Rn~~~i~~ 298 (374)
--.++.- ...+.+|+=. |.-+-+ .+ ..+ -..++.+.++.+..| .++++-.+-+.++...
T Consensus 561 sl~~L~~l~~l~~d~lKi-----D~s~i~---------~i--~~~--~~~v~~i~~~a~~l~--i~viAegVE~~~~~~~ 620 (651)
T PRK13561 561 GLRQLQHMKSLPIDVLKI-----DKMFVD---------GL--PED--DSMVAAIIMLAQSLN--LQVIAEGVETEAQRDW 620 (651)
T ss_pred cHHHHhhcCCCCCcEEEE-----CHHHHh---------cC--CCC--HHHHHHHHHHHHHCC--CcEEEecCCCHHHHHH
Confidence 1111110 1122333321 111100 00 012 245777777777765 4578888888887765
Q ss_pred --hhCCcEe
Q 017271 299 --LLGVDYI 305 (374)
Q Consensus 299 --laG~D~l 305 (374)
.+|||++
T Consensus 621 l~~~g~d~~ 629 (651)
T PRK13561 621 LLKAGVGIA 629 (651)
T ss_pred HHhcCCCEE
Confidence 6899986
No 253
>PF02568 ThiI: Thiamine biosynthesis protein (ThiI); InterPro: IPR020536 Thiamine pyrophosphate (TPP) is synthesized de novo in many bacteria and is a required cofactor for many enzymes in the cell. ThiI is required for thiazole synthesis in the thiamine biosynthesis pathway []. Almost all proteins containing this entry have an N-terminal THUMP domain (see IPR004114 from INTERPRO).; GO: 0003723 RNA binding, 0009228 thiamine biosynthetic process, 0005737 cytoplasm; PDB: 1VBK_B 2C5S_A.
Probab=24.00 E-value=93 Score=29.24 Aligned_cols=59 Identities=15% Similarity=0.090 Sum_probs=25.7
Q ss_pred cCCCCeEEEEecCCccCCHHHHHHHHHHHH--HHhcCCCCCCCcEEEEecCChhHHHHHHHHHHc
Q 017271 146 KMVPGRVSTEVDARLAYDTHGIIRKVHDLL--KLYSEIDVPPERLLFKIPSTWQGIEASRLLESE 208 (374)
Q Consensus 146 ~~v~G~VS~EVdp~la~D~e~~I~eA~~L~--~l~~~~gv~~~nVlIKIPaT~eGi~A~~~L~~e 208 (374)
+..+++| +-|-+++|.+++|+.||++- ++...-. +.=-++.|=|.|+.-++-+++++++
T Consensus 134 ~~~~~pI---lRPLig~dK~EIi~~Ar~Igtye~S~~~~-~~C~~~~k~p~t~~~~~~~~~~e~~ 194 (197)
T PF02568_consen 134 SASDLPI---LRPLIGFDKEEIIEIARKIGTYEISIRPY-DCCSLFPKHPVTKAKLEEVEKEEEK 194 (197)
T ss_dssp GG--S-E---E-TTTT--HHHHHHHHHHTT-HHHHTS------------------HHHHHHHHTT
T ss_pred cccCCce---eCCcCCCCHHHHHHHHHHhCchhhhcCCC-CcceeeCCCCCcCCCHHHHHHHHHH
Confidence 3335554 46778999999999999983 3221111 2223566999999999999888763
No 254
>COG0167 PyrD Dihydroorotate dehydrogenase [Nucleotide transport and metabolism]
Probab=23.98 E-value=7.6e+02 Score=24.95 Aligned_cols=93 Identities=13% Similarity=-0.008 Sum_probs=57.9
Q ss_pred cCCCCeEEEEecCCccCCHHHHHHHHHHHHHHh-cC---CC--CCCCcEEEEe----cC-----------ChhHHHHHHH
Q 017271 146 KMVPGRVSTEVDARLAYDTHGIIRKVHDLLKLY-SE---ID--VPPERLLFKI----PS-----------TWQGIEASRL 204 (374)
Q Consensus 146 ~~v~G~VS~EVdp~la~D~e~~I~eA~~L~~l~-~~---~g--v~~~nVlIKI----Pa-----------T~eGi~A~~~ 204 (374)
+...=+|.+-+.| +.+.+.+-|+.+.+.. +. .| +++.++.++= ++ .+-.++.+++
T Consensus 158 ~~~~~Pv~vKl~P----~~~di~~iA~~~~~~g~Dgl~~~NT~~~~~~id~~~~~~~~~~~~GGLSG~~ikp~al~~v~~ 233 (310)
T COG0167 158 AATKVPVFVKLAP----NITDIDEIAKAAEEAGADGLIAINTTKSGMKIDLETKKPVLANETGGLSGPPLKPIALRVVAE 233 (310)
T ss_pred hcccCceEEEeCC----CHHHHHHHHHHHHHcCCcEEEEEeeccccccccccccccccCcCCCCcCcccchHHHHHHHHH
Confidence 3344578888877 5556666666555532 00 01 1122222222 22 2234788888
Q ss_pred HHHc-C--ceeEEe-ecCCHHHHHHHHHcCCcEEEechhhhh
Q 017271 205 LESE-G--IQTHLT-FVYSFAQAAAAAQAGASVIQIFVGRLR 242 (374)
Q Consensus 205 L~~e-G--I~vN~T-lIFS~~QA~aaa~AGas~ISpFVGRId 242 (374)
|.++ | |++-.+ -|+|.+.|..-..|||+.+.++-+-+.
T Consensus 234 l~~~~~~~ipIIGvGGI~s~~DA~E~i~aGA~~vQv~Tal~~ 275 (310)
T COG0167 234 LYKRLGGDIPIIGVGGIETGEDALEFILAGASAVQVGTALIY 275 (310)
T ss_pred HHHhcCCCCcEEEecCcCcHHHHHHHHHcCCchheeeeeeee
Confidence 8876 5 666544 689999999999999999998877664
No 255
>KOG2335 consensus tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=23.88 E-value=6.6e+02 Score=26.06 Aligned_cols=92 Identities=16% Similarity=0.172 Sum_probs=61.0
Q ss_pred hHHHHHHHHhcCCCCeEEEEecCCccCCHHHHHHHHHHHHHHhcCC----CCCCCcE-EEEecCChhHHHHHHHHHHcCc
Q 017271 136 ALVNVGGDLAKMVPGRVSTEVDARLAYDTHGIIRKVHDLLKLYSEI----DVPPERL-LFKIPSTWQGIEASRLLESEGI 210 (374)
Q Consensus 136 ~~v~~g~eil~~v~G~VS~EVdp~la~D~e~~I~eA~~L~~l~~~~----gv~~~nV-lIKIPaT~eGi~A~~~L~~eGI 210 (374)
++-++.+.+......+||+-+ |+..|-+.+++.|+.+-.-.-.+ |..++-= .-+=|+-|+-|+++++.-.+ |
T Consensus 128 Lv~e~V~~v~~~l~~pVs~KI--RI~~d~~kTvd~ak~~e~aG~~~ltVHGRtr~~kg~~~~pad~~~i~~v~~~~~~-i 204 (358)
T KOG2335|consen 128 LVGEMVSAVRANLNVPVSVKI--RIFVDLEKTVDYAKMLEDAGVSLLTVHGRTREQKGLKTGPADWEAIKAVRENVPD-I 204 (358)
T ss_pred HHHHHHHHHHhhcCCCeEEEE--EecCcHHHHHHHHHHHHhCCCcEEEEecccHHhcCCCCCCcCHHHHHHHHHhCcC-C
Confidence 333344455566667777777 78899999999999775532110 1111000 01557889999999888776 7
Q ss_pred eeEEe-ecCCHHHHHHHHH-cC
Q 017271 211 QTHLT-FVYSFAQAAAAAQ-AG 230 (374)
Q Consensus 211 ~vN~T-lIFS~~QA~aaa~-AG 230 (374)
++-+- =|.|++.+..|.+ -|
T Consensus 205 pviaNGnI~~~~d~~~~~~~tG 226 (358)
T KOG2335|consen 205 PVIANGNILSLEDVERCLKYTG 226 (358)
T ss_pred cEEeeCCcCcHHHHHHHHHHhC
Confidence 76554 3899999999998 35
No 256
>TIGR00970 leuA_yeast 2-isopropylmalate synthase, yeast type. A larger family of homologous proteins includes homocitrate synthase, distinct lineages of 2-isopropylmalate synthase, several distinct, uncharacterized, orthologous sets in the Archaea, and other related enzymes. This model describes a family of 2-isopropylmalate synthases as found in yeasts and in a minority of studied bacteria.
Probab=23.70 E-value=5.8e+02 Score=27.80 Aligned_cols=67 Identities=19% Similarity=0.267 Sum_probs=42.5
Q ss_pred HHHHHHHHHhcCCCCCC-C-cEEEEecCChh-----H-HHHHHHHHH---------cCceeEEeecCCHHHHHHHHHcCC
Q 017271 169 RKVHDLLKLYSEIDVPP-E-RLLFKIPSTWQ-----G-IEASRLLES---------EGIQTHLTFVYSFAQAAAAAQAGA 231 (374)
Q Consensus 169 ~eA~~L~~l~~~~gv~~-~-nVlIKIPaT~e-----G-i~A~~~L~~---------eGI~vN~TlIFS~~QA~aaa~AGa 231 (374)
+.+.++.+...+.|.+. + -+.|-||-|-. - ...++.|.+ -+++|+=++=..+.-+++|.+||+
T Consensus 184 ~~l~~~~~~a~~ag~~~~~~~~~i~l~DTvG~a~P~~~~~~i~~l~~~~~~~~~~~l~vH~HND~GlAvANslaAv~aGa 263 (564)
T TIGR00970 184 EFAKEVCEAVKEVWAPTPERPIIFNLPATVEMTTPNVYADSIEYFSTNIAEREKVCLSLHPHNDRGTAVAAAELGFLAGA 263 (564)
T ss_pred HHHHHHHHHHHHhCCCccCCeeEEEeccccCccCHHHHHHHHHHHHHhcCcccCceEEEEECCCCChHHHHHHHHHHhCC
Confidence 34444444444445532 1 25678998752 2 233444432 377888888888899999999999
Q ss_pred cEEE
Q 017271 232 SVIQ 235 (374)
Q Consensus 232 s~IS 235 (374)
..+.
T Consensus 264 ~~v~ 267 (564)
T TIGR00970 264 DRIE 267 (564)
T ss_pred CEEE
Confidence 9887
No 257
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=23.63 E-value=4.5e+02 Score=26.43 Aligned_cols=28 Identities=21% Similarity=0.234 Sum_probs=22.0
Q ss_pred CceeEEee-cCCHHHHHHHHHcC-CcEEEe
Q 017271 209 GIQTHLTF-VYSFAQAAAAAQAG-ASVIQI 236 (374)
Q Consensus 209 GI~vN~Tl-IFS~~QA~aaa~AG-as~ISp 236 (374)
+|+|-++- +++++++..+.+.| ++.|+.
T Consensus 285 ~ipvi~~G~i~~~~~~~~~l~~~~~D~V~~ 314 (343)
T cd04734 285 DLPVFHAGRIRDPAEAEQALAAGHADMVGM 314 (343)
T ss_pred CCCEEeeCCCCCHHHHHHHHHcCCCCeeee
Confidence 78888877 78999999999875 666654
No 258
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=23.50 E-value=5.9e+02 Score=23.51 Aligned_cols=85 Identities=21% Similarity=0.181 Sum_probs=53.9
Q ss_pred eEEEEecCCccCCHHHHHHHHHHHHHHhcCCCCCCCcEEEEec---CCh----hHHHHHHHHHH---cCceeEEeecCCH
Q 017271 151 RVSTEVDARLAYDTHGIIRKVHDLLKLYSEIDVPPERLLFKIP---STW----QGIEASRLLES---EGIQTHLTFVYSF 220 (374)
Q Consensus 151 ~VS~EVdp~la~D~e~~I~eA~~L~~l~~~~gv~~~nVlIKIP---aT~----eGi~A~~~L~~---eGI~vN~TlIFS~ 220 (374)
.|++-..-....+.+...+-++++.++ |+ +.|.|+=- .++ +-++++++.-. -|++++-++=+.+
T Consensus 123 ~v~~~~~~~~~~~~~~~~~~~~~~~~~----g~--~~i~l~Dt~G~~~P~~v~~lv~~~~~~~~~~~l~~H~Hnd~Gla~ 196 (237)
T PF00682_consen 123 EVAFGCEDASRTDPEELLELAEALAEA----GA--DIIYLADTVGIMTPEDVAELVRALREALPDIPLGFHAHNDLGLAV 196 (237)
T ss_dssp EEEEEETTTGGSSHHHHHHHHHHHHHH----T---SEEEEEETTS-S-HHHHHHHHHHHHHHSTTSEEEEEEBBTTS-HH
T ss_pred ceEeCccccccccHHHHHHHHHHHHHc----CC--eEEEeeCccCCcCHHHHHHHHHHHHHhccCCeEEEEecCCccchh
Confidence 455554333456778888777777776 33 56666511 122 33555554433 4889999999999
Q ss_pred HHHHHHHHcCCcEEEechhhh
Q 017271 221 AQAAAAAQAGASVIQIFVGRL 241 (374)
Q Consensus 221 ~QA~aaa~AGas~ISpFVGRI 241 (374)
..+++|.++|+.+|-.=++=+
T Consensus 197 An~laA~~aGa~~id~t~~Gl 217 (237)
T PF00682_consen 197 ANALAALEAGADRIDGTLGGL 217 (237)
T ss_dssp HHHHHHHHTT-SEEEEBGGGG
T ss_pred HHHHHHHHcCCCEEEccCccC
Confidence 999999999999876655444
No 259
>PRK02615 thiamine-phosphate pyrophosphorylase; Provisional
Probab=23.45 E-value=7.8e+02 Score=25.15 Aligned_cols=137 Identities=13% Similarity=0.068 Sum_probs=77.0
Q ss_pred EEEecCCccCCHHHHHHHHHHHHHHhcCCCCCCCcEEE--------EecC-------ChhHHHHHHHHHHcCceeEEeec
Q 017271 153 STEVDARLAYDTHGIIRKVHDLLKLYSEIDVPPERLLF--------KIPS-------TWQGIEASRLLESEGIQTHLTFV 217 (374)
Q Consensus 153 S~EVdp~la~D~e~~I~eA~~L~~l~~~~gv~~~nVlI--------KIPa-------T~eGi~A~~~L~~eGI~vN~TlI 217 (374)
.++.-- -.-|..+.++.|+.+..+++..|+ .++| ++.+ ..--+..++.+...+. +--.-+
T Consensus 173 ~VQLR~-K~~~~~~~~~~a~~L~~l~~~~~~---~lIIND~vdlAl~~~aDGVHLgq~dl~~~~aR~llg~~~-iIG~S~ 247 (347)
T PRK02615 173 LVQYRD-KTADDRQRLEEAKKLKELCHRYGA---LFIVNDRVDIALAVDADGVHLGQEDLPLAVARQLLGPEK-IIGRST 247 (347)
T ss_pred EEEECC-CCCCHHHHHHHHHHHHHHHHHhCC---eEEEeChHHHHHHcCCCEEEeChhhcCHHHHHHhcCCCC-EEEEec
Confidence 355532 223566788889999988876554 2222 1111 1111344444432222 223445
Q ss_pred CCHHHHHHHHHcCCcEEEechhhhhhhhhcCCCCccchhhhccCCCcHHHHHHHHHHHHHHcCccHHHHHhccCChhcHH
Q 017271 218 YSFAQAAAAAQAGASVIQIFVGRLRDWARNHSGDPEIDDALKRGEDPALSLVSKAYNYIHKYGHKSKLMAAAVRNKQDLF 297 (374)
Q Consensus 218 FS~~QA~aaa~AGas~ISpFVGRIdd~~~~~~~d~~~~~~~~~~~d~Gv~~v~~iy~~~k~~g~~T~vLaAS~Rn~~~i~ 297 (374)
.|++++..|.+.|++|| ++|.+-...-+ .+ ..-.|+..++.+.+.+ +..+++-.+-+.+++-
T Consensus 248 Hs~~e~~~A~~~GaDYI--~lGPvf~T~tK-p~----------~~~~Gle~l~~~~~~~-----~iPv~AiGGI~~~ni~ 309 (347)
T PRK02615 248 TNPEEMAKAIAEGADYI--GVGPVFPTPTK-PG----------KAPAGLEYLKYAAKEA-----PIPWFAIGGIDKSNIP 309 (347)
T ss_pred CCHHHHHHHHHcCCCEE--EECCCcCCCCC-CC----------CCCCCHHHHHHHHHhC-----CCCEEEECCCCHHHHH
Confidence 78999999999999996 34444332111 00 0124676666654422 3446666666777776
Q ss_pred H--hhCCcEecccHHHH
Q 017271 298 S--LLGVDYIIAPLKVL 312 (374)
Q Consensus 298 ~--laG~D~lTipp~ll 312 (374)
+ .+|+|-+.+--.+.
T Consensus 310 ~l~~~Ga~gVAvisaI~ 326 (347)
T PRK02615 310 EVLQAGAKRVAVVRAIM 326 (347)
T ss_pred HHHHcCCcEEEEeHHHh
Confidence 6 47999887666655
No 260
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=23.45 E-value=5.7e+02 Score=23.31 Aligned_cols=38 Identities=13% Similarity=0.164 Sum_probs=25.2
Q ss_pred HHHHHHHHHc-CceeEEee-cCCHHHHHHHHHc-CCcEEEe
Q 017271 199 IEASRLLESE-GIQTHLTF-VYSFAQAAAAAQA-GASVIQI 236 (374)
Q Consensus 199 i~A~~~L~~e-GI~vN~Tl-IFS~~QA~aaa~A-Gas~ISp 236 (374)
++.++.+.+. +|++-+.- |.+++++..+.+. |++.|..
T Consensus 172 ~~~~~~i~~~~~ipvi~~Ggi~~~~d~~~~l~~~gad~V~i 212 (231)
T cd02801 172 WDYIAEIKEAVSIPVIANGDIFSLEDALRCLEQTGVDGVMI 212 (231)
T ss_pred HHHHHHHHhCCCCeEEEeCCCCCHHHHHHHHHhcCCCEEEE
Confidence 3444445443 56666644 6799999999988 7776654
No 261
>PLN02334 ribulose-phosphate 3-epimerase
Probab=23.43 E-value=4.8e+02 Score=24.38 Aligned_cols=108 Identities=12% Similarity=0.105 Sum_probs=64.1
Q ss_pred CcEEEEec--CChhHHHHHHHHHHcCceeEEeecC-CHHH-HHHHHHcC-CcEE---EechhhhhhhhhcCCCCccchhh
Q 017271 186 ERLLFKIP--STWQGIEASRLLESEGIQTHLTFVY-SFAQ-AAAAAQAG-ASVI---QIFVGRLRDWARNHSGDPEIDDA 257 (374)
Q Consensus 186 ~nVlIKIP--aT~eGi~A~~~L~~eGI~vN~TlIF-S~~Q-A~aaa~AG-as~I---SpFVGRIdd~~~~~~~d~~~~~~ 257 (374)
+-|.|=+- .+..-...++.+...|+.+=+++-. ++.+ .....+.| +.|+ +.|-|.=-. .
T Consensus 90 d~v~vH~~q~~~d~~~~~~~~i~~~g~~iGls~~~~t~~~~~~~~~~~~~~Dyi~~~~v~pg~~~~-------------~ 156 (229)
T PLN02334 90 SIFTFHIEQASTIHLHRLIQQIKSAGMKAGVVLNPGTPVEAVEPVVEKGLVDMVLVMSVEPGFGGQ-------------S 156 (229)
T ss_pred CEEEEeeccccchhHHHHHHHHHHCCCeEEEEECCCCCHHHHHHHHhccCCCEEEEEEEecCCCcc-------------c
Confidence 45655555 3444568888888888887777763 4444 44444443 9988 554433110 0
Q ss_pred hccCCCcHHHHHHHHHHHHHHcCccHHHHHhccCChhcHHH--hhCCcEecccHHHHH
Q 017271 258 LKRGEDPALSLVSKAYNYIHKYGHKSKLMAAAVRNKQDLFS--LLGVDYIIAPLKVLQ 313 (374)
Q Consensus 258 ~~~~~d~Gv~~v~~iy~~~k~~g~~T~vLaAS~Rn~~~i~~--laG~D~lTipp~ll~ 313 (374)
+ ...|+..++++.++.. +..+.+...-+.+++-+ .+|+|.+.+.-.+++
T Consensus 157 ~---~~~~~~~i~~~~~~~~----~~~I~a~GGI~~e~i~~l~~aGad~vvvgsai~~ 207 (229)
T PLN02334 157 F---IPSMMDKVRALRKKYP----ELDIEVDGGVGPSTIDKAAEAGANVIVAGSAVFG 207 (229)
T ss_pred c---CHHHHHHHHHHHHhCC----CCcEEEeCCCCHHHHHHHHHcCCCEEEEChHHhC
Confidence 0 1135666665554322 22455666668888866 589999988766653
No 262
>PRK00694 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Validated
Probab=23.35 E-value=1.3e+02 Score=32.99 Aligned_cols=74 Identities=22% Similarity=0.267 Sum_probs=55.9
Q ss_pred hhhhhHHHHHHHHhcC----C-CCeEEEEecCCccCCHHHHHHHHHHHHHHhcCCCCCCCcEEEEecCCh--hHHHHHHH
Q 017271 132 FFNKALVNVGGDLAKM----V-PGRVSTEVDARLAYDTHGIIRKVHDLLKLYSEIDVPPERLLFKIPSTW--QGIEASRL 204 (374)
Q Consensus 132 ~~~~~~v~~g~eil~~----v-~G~VS~EVdp~la~D~e~~I~eA~~L~~l~~~~gv~~~nVlIKIPaT~--eGi~A~~~ 204 (374)
.-.+++++.+++.--- + .|.+|-.+-.++.+..++|++-|.+.++++++.|. .||+|-+-++. .-++|-+.
T Consensus 145 e~~~~vV~~ake~~~~IRIGvN~GSL~~~i~~~yG~tpegmVeSAle~~~i~e~~~f--~diviS~KsSnv~~mi~Ayrl 222 (606)
T PRK00694 145 EKFSPLVEKCKRLGKAMRIGVNHGSLSERVMQRYGDTIEGMVYSALEYIEVCEKLDY--RDVVFSMKSSNPKVMVAAYRQ 222 (606)
T ss_pred HHHHHHHHHHHHCCCCEEEecCCcCchHHHHHHhCCCHHHHHHHHHHHHHHHHHCCC--CcEEEEEEcCCHHHHHHHHHH
Confidence 3456777666653221 1 47777777777777899999999999999999998 88888887776 56888887
Q ss_pred HHH
Q 017271 205 LES 207 (374)
Q Consensus 205 L~~ 207 (374)
|.+
T Consensus 223 La~ 225 (606)
T PRK00694 223 LAK 225 (606)
T ss_pred HHH
Confidence 774
No 263
>PRK09389 (R)-citramalate synthase; Provisional
Probab=23.14 E-value=5.8e+02 Score=27.19 Aligned_cols=81 Identities=21% Similarity=0.176 Sum_probs=51.4
Q ss_pred eEEEEecCCccCCHHHHHHHHHHHHHHhcCCCCCCCcEEEEecCChhH------HHHHHHHHHc-----CceeEEeecCC
Q 017271 151 RVSTEVDARLAYDTHGIIRKVHDLLKLYSEIDVPPERLLFKIPSTWQG------IEASRLLESE-----GIQTHLTFVYS 219 (374)
Q Consensus 151 ~VS~EVdp~la~D~e~~I~eA~~L~~l~~~~gv~~~nVlIKIPaT~eG------i~A~~~L~~e-----GI~vN~TlIFS 219 (374)
.++.|-..| .|.+..++-++.+.+ .|. ++ |-||-|--+ -..++.|.+. |++|+=++=..
T Consensus 131 ~~~~ed~~r--~~~~~l~~~~~~~~~----~Ga--~~--i~l~DTvG~~~P~~~~~lv~~l~~~~~v~l~~H~HND~GlA 200 (488)
T PRK09389 131 ELSGEDASR--ADLDFLKELYKAGIE----AGA--DR--ICFCDTVGILTPEKTYELFKRLSELVKGPVSIHCHNDFGLA 200 (488)
T ss_pred EEEEeeCCC--CCHHHHHHHHHHHHh----CCC--CE--EEEecCCCCcCHHHHHHHHHHHHhhcCCeEEEEecCCccHH
Confidence 466664333 455555555554444 445 33 667776522 2334444432 88889999999
Q ss_pred HHHHHHHHHcCCcEEEechhhh
Q 017271 220 FAQAAAAAQAGASVIQIFVGRL 241 (374)
Q Consensus 220 ~~QA~aaa~AGas~ISpFVGRI 241 (374)
+.-+++|.+||+..|.-=++=+
T Consensus 201 vANalaAv~aGa~~Vd~Ti~Gi 222 (488)
T PRK09389 201 VANTLAALAAGADQVHVTINGI 222 (488)
T ss_pred HHHHHHHHHcCCCEEEEEcccc
Confidence 9999999999998777665544
No 264
>PRK09875 putative hydrolase; Provisional
Probab=22.97 E-value=7.5e+02 Score=24.52 Aligned_cols=102 Identities=10% Similarity=0.104 Sum_probs=64.1
Q ss_pred hhhhHHHHHHHHhcCCC------CeE-EEEecC-CccCCHHHHHHHHHHHHHHhcCCCCCCCcEEEEecCChhHHHHHHH
Q 017271 133 FNKALVNVGGDLAKMVP------GRV-STEVDA-RLAYDTHGIIRKVHDLLKLYSEIDVPPERLLFKIPSTWQGIEASRL 204 (374)
Q Consensus 133 ~~~~~v~~g~eil~~v~------G~V-S~EVdp-~la~D~e~~I~eA~~L~~l~~~~gv~~~nVlIKIPaT~eGi~A~~~ 204 (374)
.+...-.+.+|+.++++ |-| -+=++. .+....+..++.|-+.... -|. =|.+=.|...+|.+.++.
T Consensus 98 ~e~la~~~i~ei~~Gi~gt~ikaGvIGeiG~~~~~it~~E~kvl~Aaa~a~~~---TG~---pi~~Ht~~~~~g~e~l~i 171 (292)
T PRK09875 98 VQELAQEMVDEIEQGIDGTELKAGIIAEIGSSEGKITPLEEKVFIAAALAHNQ---TGR---PISTHTSFSTMGLEQLAL 171 (292)
T ss_pred HHHHHHHHHHHHHHhhccCCCcccEEEEEecCCCCCCHHHHHHHHHHHHHHHH---HCC---cEEEcCCCccchHHHHHH
Confidence 34455556667777765 543 222233 2444455555555444332 233 366777776699999999
Q ss_pred HHHcCc---eeEEeec---CCHHHHHHHHHcCCcEEEechhh
Q 017271 205 LESEGI---QTHLTFV---YSFAQAAAAAQAGASVIQIFVGR 240 (374)
Q Consensus 205 L~~eGI---~vN~TlI---FS~~QA~aaa~AGas~ISpFVGR 240 (374)
|.++|+ +|-++-+ +.+.+....++.|+.+-==.+|+
T Consensus 172 l~e~Gvd~~rvvi~H~d~~~d~~~~~~l~~~G~~l~fD~~g~ 213 (292)
T PRK09875 172 LQAHGVDLSRVTVGHCDLKDNLDNILKMIDLGAYVQFDTIGK 213 (292)
T ss_pred HHHcCcCcceEEEeCCCCCCCHHHHHHHHHcCCEEEeccCCC
Confidence 999999 6666655 79999999999997543224444
No 265
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=22.80 E-value=7.5e+02 Score=27.13 Aligned_cols=61 Identities=15% Similarity=0.121 Sum_probs=38.1
Q ss_pred HHHhcCCCCCCCcEEEEecCChhHHHHHHHHHHcCceeEEeecCCH------HH----HHHHHHcCCcEEE
Q 017271 175 LKLYSEIDVPPERLLFKIPSTWQGIEASRLLESEGIQTHLTFVYSF------AQ----AAAAAQAGASVIQ 235 (374)
Q Consensus 175 ~~l~~~~gv~~~nVlIKIPaT~eGi~A~~~L~~eGI~vN~TlIFS~------~Q----A~aaa~AGas~IS 235 (374)
++...+.|++.=|++.-+--...-.++++...+.|..+.+++.|+. +. +..+.++|+..|+
T Consensus 102 v~~A~~~Gvd~irif~~lnd~~n~~~~i~~ak~~G~~v~~~i~~t~~p~~t~~~~~~~a~~l~~~Gad~I~ 172 (592)
T PRK09282 102 VEKAAENGIDIFRIFDALNDVRNMEVAIKAAKKAGAHVQGTISYTTSPVHTIEKYVELAKELEEMGCDSIC 172 (592)
T ss_pred HHHHHHCCCCEEEEEEecChHHHHHHHHHHHHHcCCEEEEEEEeccCCCCCHHHHHHHHHHHHHcCCCEEE
Confidence 3444455775444444433333567778888888999998888755 22 3445567887654
No 266
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=22.69 E-value=7.1e+02 Score=24.14 Aligned_cols=44 Identities=18% Similarity=0.117 Sum_probs=30.5
Q ss_pred HHHHHHHHHHc-CceeE-EeecCCHHHHHHHHHcCCcEEEechhhh
Q 017271 198 GIEASRLLESE-GIQTH-LTFVYSFAQAAAAAQAGASVIQIFVGRL 241 (374)
Q Consensus 198 Gi~A~~~L~~e-GI~vN-~TlIFS~~QA~aaa~AGas~ISpFVGRI 241 (374)
.++.++++.+. +|++- .--|.+.+++..+.++|++.|+..=+=+
T Consensus 222 ~l~~v~~i~~~~~ipvi~~GGI~~~~da~~~l~aGAd~V~igr~ll 267 (301)
T PRK07259 222 ALRMVYQVYQAVDIPIIGMGGISSAEDAIEFIMAGASAVQVGTANF 267 (301)
T ss_pred cHHHHHHHHHhCCCCEEEECCCCCHHHHHHHHHcCCCceeEcHHHh
Confidence 35666666654 67765 3457899999999999988776554433
No 267
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=22.50 E-value=5.7e+02 Score=25.13 Aligned_cols=38 Identities=13% Similarity=0.055 Sum_probs=27.0
Q ss_pred ChhHHHHHHHHHHcCceeEEee-cCCHHHHHHHHHcCCcEE
Q 017271 195 TWQGIEASRLLESEGIQTHLTF-VYSFAQAAAAAQAGASVI 234 (374)
Q Consensus 195 T~eGi~A~~~L~~eGI~vN~Tl-IFS~~QA~aaa~AGas~I 234 (374)
+++-|+.+++- .+++|.+-. |-+++|+..|.+.|+.-+
T Consensus 163 ~~~~I~~I~e~--~~vpVI~egGI~tpeda~~AmelGAdgV 201 (248)
T cd04728 163 NPYNLRIIIER--ADVPVIVDAGIGTPSDAAQAMELGADAV 201 (248)
T ss_pred CHHHHHHHHHh--CCCcEEEeCCCCCHHHHHHHHHcCCCEE
Confidence 34445544332 378887776 899999999999997543
No 268
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=22.45 E-value=94 Score=30.90 Aligned_cols=82 Identities=15% Similarity=0.186 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHcCceeEEeec--CCHHHHHHHHHcCCcEEEechhhhhhhhhcCCCCccchhhhccCCCcHHHHHHHHHH
Q 017271 197 QGIEASRLLESEGIQTHLTFV--YSFAQAAAAAQAGASVIQIFVGRLRDWARNHSGDPEIDDALKRGEDPALSLVSKAYN 274 (374)
Q Consensus 197 eGi~A~~~L~~eGI~vN~TlI--FS~~QA~aaa~AGas~ISpFVGRIdd~~~~~~~d~~~~~~~~~~~d~Gv~~v~~iy~ 274 (374)
+-|+.++++...-+.+|+... +-.+|...+.+.|+.+|+...|.-.++. +
T Consensus 52 ~~i~~~~~~t~~pfgvn~~~~~~~~~~~~~~~~~~~v~~v~~~~g~p~~~i----------------------------~ 103 (307)
T TIGR03151 52 KEIRKVKELTDKPFGVNIMLLSPFVDELVDLVIEEKVPVVTTGAGNPGKYI----------------------------P 103 (307)
T ss_pred HHHHHHHHhcCCCcEEeeecCCCCHHHHHHHHHhCCCCEEEEcCCCcHHHH----------------------------H
Q ss_pred HHHHcCccHHHHHhccCChhcHHHhhCCcEecc
Q 017271 275 YIHKYGHKSKLMAAAVRNKQDLFSLLGVDYIIA 307 (374)
Q Consensus 275 ~~k~~g~~T~vLaAS~Rn~~~i~~laG~D~lTi 307 (374)
.+|++|.+.-....+.+....+.+. |+|.+++
T Consensus 104 ~lk~~g~~v~~~v~s~~~a~~a~~~-GaD~Ivv 135 (307)
T TIGR03151 104 RLKENGVKVIPVVASVALAKRMEKA-GADAVIA 135 (307)
T ss_pred HHHHcCCEEEEEcCCHHHHHHHHHc-CCCEEEE
No 269
>PRK11170 nagA N-acetylglucosamine-6-phosphate deacetylase; Provisional
Probab=22.30 E-value=2.5e+02 Score=28.73 Aligned_cols=52 Identities=17% Similarity=0.131 Sum_probs=41.8
Q ss_pred hhHHHHHHHHHHcCceeEEe-ecCCHHHHHHHHHcCCcEEEechhhhhhhhhc
Q 017271 196 WQGIEASRLLESEGIQTHLT-FVYSFAQAAAAAQAGASVIQIFVGRLRDWARN 247 (374)
Q Consensus 196 ~eGi~A~~~L~~eGI~vN~T-lIFS~~QA~aaa~AGas~ISpFVGRIdd~~~~ 247 (374)
..|.++++.|.++||.+.+= --=+.+|+..|.++|++.+.-+.+-+.-...+
T Consensus 175 ~~~~~~i~~l~~~gi~vs~GHs~A~~~~~~~a~~~Ga~~~THlfNaM~~~~hR 227 (382)
T PRK11170 175 MVDAEVIRKLVEAGIVVSAGHSNATYEEAKAGFRAGITFATHLYNAMPYITGR 227 (382)
T ss_pred CCcHHHHHHHHHCCcEEEeeCCcCCHHHHHHHHHcCCCEEeeccccCCcccCC
Confidence 56789999999999988642 23478999999999999998888877765544
No 270
>PTZ00397 macrophage migration inhibition factor-like protein; Provisional
Probab=22.28 E-value=2e+02 Score=24.00 Aligned_cols=32 Identities=16% Similarity=0.223 Sum_probs=24.4
Q ss_pred CCHHHHHHHHHHHHHHh-cCCCCCCCcEEEEec
Q 017271 162 YDTHGIIRKVHDLLKLY-SEIDVPPERLLFKIP 193 (374)
Q Consensus 162 ~D~e~~I~eA~~L~~l~-~~~gv~~~nVlIKIP 193 (374)
.+.+...+-+++|.++. ++.|++++||+|.+=
T Consensus 69 ~~~e~k~~l~~~i~~~l~~~lgi~~~rv~I~f~ 101 (116)
T PTZ00397 69 ISRSNNSSIAAAITKILASHLKVKSERVYIEFK 101 (116)
T ss_pred CCHHHHHHHHHHHHHHHHHHhCcCcccEEEEEE
Confidence 45666666677787755 568999999999874
No 271
>PRK06978 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=22.26 E-value=60 Score=32.54 Aligned_cols=93 Identities=20% Similarity=0.165 Sum_probs=55.7
Q ss_pred CcEEEEe------cCChhHHHHHHHHHHcCceeEEeecCCHHHHHHHHHcCCcEEEechhhhhhhhhcCCCCccchhhhc
Q 017271 186 ERLLFKI------PSTWQGIEASRLLESEGIQTHLTFVYSFAQAAAAAQAGASVIQIFVGRLRDWARNHSGDPEIDDALK 259 (374)
Q Consensus 186 ~nVlIKI------PaT~eGi~A~~~L~~eGI~vN~TlIFS~~QA~aaa~AGas~ISpFVGRIdd~~~~~~~d~~~~~~~~ 259 (374)
+-||||= ..-.+-++.++.+..+ .++ ---+-+++|+..|+++|+.+|- .|.+
T Consensus 177 D~vLIkdNHi~~~G~i~~av~~~r~~~~~-~kI-eVEvetleea~eA~~aGaDiIm------LDnm-------------- 234 (294)
T PRK06978 177 DGILIKENHIAAAGGVGAALDAAFALNAG-VPV-QIEVETLAQLETALAHGAQSVL------LDNF-------------- 234 (294)
T ss_pred ceEEEeHHHHHHhCCHHHHHHHHHHhCCC-CcE-EEEcCCHHHHHHHHHcCCCEEE------ECCC--------------
Confidence 4688882 2222345555554332 222 2245689999999999998873 2211
Q ss_pred cCCCcHHHHHHHHHHHHHHcCccHHHHHhccCChhcHHH--hhCCcEeccc
Q 017271 260 RGEDPALSLVSKAYNYIHKYGHKSKLMAAAVRNKQDLFS--LLGVDYIIAP 308 (374)
Q Consensus 260 ~~~d~Gv~~v~~iy~~~k~~g~~T~vLaAS~Rn~~~i~~--laG~D~lTip 308 (374)
..+.++++..+.+. +..+-++..-|.+++.+ ..|+|++.+.
T Consensus 235 -----spe~l~~av~~~~~---~~~lEaSGGIt~~ni~~yA~tGVD~IS~g 277 (294)
T PRK06978 235 -----TLDMMREAVRVTAG---RAVLEVSGGVNFDTVRAFAETGVDRISIG 277 (294)
T ss_pred -----CHHHHHHHHHhhcC---CeEEEEECCCCHHHHHHHHhcCCCEEEeC
Confidence 23456666665542 33333444578888876 6899998654
No 272
>PRK12756 phospho-2-dehydro-3-deoxyheptonate aldolase; Provisional
Probab=22.22 E-value=2.9e+02 Score=28.50 Aligned_cols=39 Identities=13% Similarity=0.054 Sum_probs=34.9
Q ss_pred HHHhcCCCCeEEEEecCCccCCHHHHHHHHHHHHHHhcC
Q 017271 142 GDLAKMVPGRVSTEVDARLAYDTHGIIRKVHDLLKLYSE 180 (374)
Q Consensus 142 ~eil~~v~G~VS~EVdp~la~D~e~~I~eA~~L~~l~~~ 180 (374)
++|+.+.+.+.-+=|-|--.+|.++.++-|++|.++.++
T Consensus 43 ~~Il~g~d~rllvIvGPCSIhd~~~a~eyA~rL~~l~~~ 81 (348)
T PRK12756 43 EKILNGEDPRLLVIIGPCSIHDTDAALDYATRLAALREQ 81 (348)
T ss_pred HHHhcCCCCceEEEecCCcCCCHHHHHHHHHHHHHHHHH
Confidence 477788888999999999999999999999999999865
No 273
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=21.93 E-value=1.4e+02 Score=22.96 Aligned_cols=36 Identities=25% Similarity=0.444 Sum_probs=29.0
Q ss_pred CcEEEEecCChhHHHHHHHHHHcCceeEEeecCCHHHH
Q 017271 186 ERLLFKIPSTWQGIEASRLLESEGIQTHLTFVYSFAQA 223 (374)
Q Consensus 186 ~nVlIKIPaT~eGi~A~~~L~~eGI~vN~TlIFS~~QA 223 (374)
++.+|=.+.|.++++|=+.|.+.||++ .++=.+.+.
T Consensus 2 ~~~~i~F~st~~a~~~ek~lk~~gi~~--~liP~P~~i 37 (73)
T PF11823_consen 2 KYYLITFPSTHDAMKAEKLLKKNGIPV--RLIPTPREI 37 (73)
T ss_pred ceEEEEECCHHHHHHHHHHHHHCCCcE--EEeCCChhc
Confidence 467888999999999999999999954 555666553
No 274
>PRK00694 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Validated
Probab=21.84 E-value=8.7e+02 Score=26.95 Aligned_cols=85 Identities=15% Similarity=0.149 Sum_probs=55.6
Q ss_pred CeEEEEecCC-ccCCHHHHHHHHHHHHHHhcCCCCCCCcEEEEecCCh--hHHHHHH-HHHHcC--ceeEEeecCCHHHH
Q 017271 150 GRVSTEVDAR-LAYDTHGIIRKVHDLLKLYSEIDVPPERLLFKIPSTW--QGIEASR-LLESEG--IQTHLTFVYSFAQA 223 (374)
Q Consensus 150 G~VS~EVdp~-la~D~e~~I~eA~~L~~l~~~~gv~~~nVlIKIPaT~--eGi~A~~-~L~~eG--I~vN~TlIFS~~QA 223 (374)
-+|++|-... --.|++++++|.++|.+..- +=|-|-+|.-. +.++.|+ .|.+.| |++-+-.=|.+.=|
T Consensus 29 ~PI~VQSMt~t~T~D~~atv~Qi~~L~~aGc------eiVRvtvp~~~~A~al~~I~~~L~~~g~~iPLVADIHF~~~~A 102 (606)
T PRK00694 29 HSIKIQSMTTTATTDVDGTVRQICALQEWGC------DIVRVTVQGLKEAQACEHIKERLIQQGISIPLVADIHFFPQAA 102 (606)
T ss_pred CceEEEecCCCCcccHHHHHHHHHHHHHcCC------CEEEEcCCCHHHHHhHHHHHHHHhccCCCCCEEeecCCChHHH
Confidence 3889985332 34689999999999988742 44666666554 3344443 355556 45566678999999
Q ss_pred HHHHHcCCcEEEechhhh
Q 017271 224 AAAAQAGASVIQIFVGRL 241 (374)
Q Consensus 224 ~aaa~AGas~ISpFVGRI 241 (374)
..|+++ +.=|=.-=|-+
T Consensus 103 ~~a~~~-vdkiRINPGNi 119 (606)
T PRK00694 103 MHVADF-VDKVRINPGNY 119 (606)
T ss_pred HHHHHh-cCceEECCccc
Confidence 999987 44443333433
No 275
>TIGR00973 leuA_bact 2-isopropylmalate synthase, bacterial type. A larger family of homologous proteins includes homocitrate synthase, distinct lineages of 2-isopropylmalate synthase, several distinct, uncharacterized, orthologous sets in the Archaea, and other related enzymes. This model describes a family of 2-isopropylmalate synthases found primarily in Bacteria. The homologous families in the Archaea may represent isozymes and/or related enzymes.
Probab=21.73 E-value=8.9e+02 Score=25.82 Aligned_cols=133 Identities=15% Similarity=0.085 Sum_probs=71.5
Q ss_pred ccCCHHHHHHHHHHHHHHhcCCCCCCCcEEEEecCChhH-HHHHHHHHHcCceeEEee-cC-CHHHHHHHHHc----CCc
Q 017271 160 LAYDTHGIIRKVHDLLKLYSEIDVPPERLLFKIPSTWQG-IEASRLLESEGIQTHLTF-VY-SFAQAAAAAQA----GAS 232 (374)
Q Consensus 160 la~D~e~~I~eA~~L~~l~~~~gv~~~nVlIKIPaT~eG-i~A~~~L~~eGI~vN~Tl-IF-S~~QA~aaa~A----Gas 232 (374)
..+++++.++-|+.|.++ || +.|=+=.|+..++ .++++.+...+-+.-+.. += ...-...+.++ +..
T Consensus 18 ~~~s~e~K~~ia~~L~~~----GV--~~IEvG~p~~s~~d~e~v~~i~~~~~~~~i~al~r~~~~did~a~~al~~~~~~ 91 (494)
T TIGR00973 18 ASLTVEEKLQIALALERL----GV--DIIEAGFPVSSPGDFEAVQRIARTVKNPRVCGLARCVEKDIDAAAEALKPAEKF 91 (494)
T ss_pred CCcCHHHHHHHHHHHHHc----CC--CEEEEECCCCCHHHHHHHHHHHHhCCCCEEEEEcCCCHHhHHHHHHhccccCCC
Confidence 456777777777777665 45 6677778877533 667777755433222222 11 12223334444 567
Q ss_pred EEEechhhhhhhhhcCCCCccchhhhccCCCcHHHHHHHHHHHHHHcCccHHHH--HhccCChhcHHH------hhCCcE
Q 017271 233 VIQIFVGRLRDWARNHSGDPEIDDALKRGEDPALSLVSKAYNYIHKYGHKSKLM--AAAVRNKQDLFS------LLGVDY 304 (374)
Q Consensus 233 ~ISpFVGRIdd~~~~~~~d~~~~~~~~~~~d~Gv~~v~~iy~~~k~~g~~T~vL--aAS~Rn~~~i~~------laG~D~ 304 (374)
.|..|++-=+-+...+.+ ...+..++.+.++.+|.+++|..+..= -++--+++.+.+ .+|+|.
T Consensus 92 ~v~i~~~~S~~h~~~~l~---------~s~~e~l~~~~~~v~~a~~~g~~v~f~~Ed~~r~d~~~l~~~~~~~~~~Ga~~ 162 (494)
T TIGR00973 92 RIHTFIATSPIHLEHKLK---------MTRDEVLERAVGMVKYAKNFTDDVEFSCEDAGRTEIPFLARIVEAAINAGATT 162 (494)
T ss_pred EEEEEEccCHHHHHHHhC---------CCHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCCCCHHHHHHHHHHHHHcCCCE
Confidence 788777654333322111 111236778888888999887543211 222223444432 368776
Q ss_pred ecc
Q 017271 305 IIA 307 (374)
Q Consensus 305 lTi 307 (374)
+.+
T Consensus 163 i~l 165 (494)
T TIGR00973 163 INI 165 (494)
T ss_pred EEe
Confidence 633
No 276
>PRK06106 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=21.59 E-value=1.6e+02 Score=29.29 Aligned_cols=66 Identities=17% Similarity=0.102 Sum_probs=44.0
Q ss_pred ecCCHHHHHHHHHcCCcEEEechhhhhhhhhcCCCCccchhhhccCCCcHHHHHHHHHHHHHHcCccHHHHHhccCChhc
Q 017271 216 FVYSFAQAAAAAQAGASVIQIFVGRLRDWARNHSGDPEIDDALKRGEDPALSLVSKAYNYIHKYGHKSKLMAAAVRNKQD 295 (374)
Q Consensus 216 lIFS~~QA~aaa~AGas~ISpFVGRIdd~~~~~~~d~~~~~~~~~~~d~Gv~~v~~iy~~~k~~g~~T~vLaAS~Rn~~~ 295 (374)
-+=|++|+..|+++|+.+|- +|. -....++++.++.+.. ..+.++..-|.++
T Consensus 200 Ev~tleea~ea~~~gaDiI~-----LDn--------------------~s~e~l~~av~~~~~~---~~leaSGGI~~~n 251 (281)
T PRK06106 200 EVDTLDQLEEALELGVDAVL-----LDN--------------------MTPDTLREAVAIVAGR---AITEASGRITPET 251 (281)
T ss_pred EeCCHHHHHHHHHcCCCEEE-----eCC--------------------CCHHHHHHHHHHhCCC---ceEEEECCCCHHH
Confidence 45599999999999998873 121 1245566666655432 2244444678888
Q ss_pred HHH--hhCCcEecccH
Q 017271 296 LFS--LLGVDYIIAPL 309 (374)
Q Consensus 296 i~~--laG~D~lTipp 309 (374)
+.+ ..|+|++.+.-
T Consensus 252 i~~yA~tGVD~Is~Ga 267 (281)
T PRK06106 252 APAIAASGVDLISVGW 267 (281)
T ss_pred HHHHHhcCCCEEEeCh
Confidence 876 68999986653
No 277
>PRK08185 hypothetical protein; Provisional
Probab=21.46 E-value=5.4e+02 Score=25.55 Aligned_cols=140 Identities=15% Similarity=0.104 Sum_probs=84.5
Q ss_pred CCeEEEEecCCccCCHHHHHHHHHHHHHHhcCCCCCCCcEEEEecCChhHHHHHHHHHHcCceeEEeecCCHHHHHHHHH
Q 017271 149 PGRVSTEVDARLAYDTHGIIRKVHDLLKLYSEIDVPPERLLFKIPSTWQGIEASRLLESEGIQTHLTFVYSFAQAAAAAQ 228 (374)
Q Consensus 149 ~G~VS~EVdp~la~D~e~~I~eA~~L~~l~~~~gv~~~nVlIKIPaT~eGi~A~~~L~~eGI~vN~TlIFS~~QA~aaa~ 228 (374)
.|+=|+.+|.. ..+.++-++.++++.+++...|++-+-=+=-|+.... ...+..+-.++-+++||....+
T Consensus 90 ~Gf~SVM~D~S-~l~~eeNi~~t~~vv~~a~~~gv~vE~ElG~vg~~e~---------~~~~~~~~~~~t~peea~~f~~ 159 (283)
T PRK08185 90 CGFTSVMIDGS-LLPYEENVALTKEVVELAHKVGVSVEGELGTIGNTGT---------SIEGGVSEIIYTDPEQAEDFVS 159 (283)
T ss_pred cCCCEEEEeCC-CCCHHHHHHHHHHHHHHHHHcCCeEEEEEeeccCccc---------ccccccccccCCCHHHHHHHHH
Confidence 48889999986 4789999999999999998887743221111221111 0011122234669999999998
Q ss_pred c-CCcEEEechhhhhhhhhcCCCCccchhhhccCCCcHHHHHHHHHHHHHHcCccHHHHHhccCChhcHHH--hhCCcEe
Q 017271 229 A-GASVIQIFVGRLRDWARNHSGDPEIDDALKRGEDPALSLVSKAYNYIHKYGHKSKLMAAAVRNKQDLFS--LLGVDYI 305 (374)
Q Consensus 229 A-Gas~ISpFVGRIdd~~~~~~~d~~~~~~~~~~~d~Gv~~v~~iy~~~k~~g~~T~vLaAS~Rn~~~i~~--laG~D~l 305 (374)
. |++++++=+|-.--.|+... .+ + --+...++|.+. .+.+--+.+.|.-..+++.. ..|+--+
T Consensus 160 ~TgvD~LAvaiGt~HG~y~~~~-kp--------~--L~~e~l~~I~~~---~~iPLVlHGgsg~~~e~~~~ai~~GI~Ki 225 (283)
T PRK08185 160 RTGVDTLAVAIGTAHGIYPKDK-KP--------E--LQMDLLKEINER---VDIPLVLHGGSANPDAEIAESVQLGVGKI 225 (283)
T ss_pred hhCCCEEEeccCcccCCcCCCC-CC--------C--cCHHHHHHHHHh---hCCCEEEECCCCCCHHHHHHHHHCCCeEE
Confidence 8 99999999988765543210 01 0 114455555443 24444445677666666654 4665555
Q ss_pred cccHHHH
Q 017271 306 IAPLKVL 312 (374)
Q Consensus 306 Tipp~ll 312 (374)
=+.-++.
T Consensus 226 Ni~T~l~ 232 (283)
T PRK08185 226 NISSDMK 232 (283)
T ss_pred EeChHHH
Confidence 4444443
No 278
>PRK06543 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=21.40 E-value=67 Score=31.95 Aligned_cols=94 Identities=19% Similarity=0.142 Sum_probs=58.6
Q ss_pred CcEEEEecC------ChhH-HHHHHHHHHc-C--ceeEEeecCCHHHHHHHHHcCCcEEEechhhhhhhhhcCCCCccch
Q 017271 186 ERLLFKIPS------TWQG-IEASRLLESE-G--IQTHLTFVYSFAQAAAAAQAGASVIQIFVGRLRDWARNHSGDPEID 255 (374)
Q Consensus 186 ~nVlIKIPa------T~eG-i~A~~~L~~e-G--I~vN~TlIFS~~QA~aaa~AGas~ISpFVGRIdd~~~~~~~d~~~~ 255 (374)
+-||||=-- .++| .+|++.+.+. + .++ .--+=|++|+..|+++|+.+|-. |.
T Consensus 160 d~vLikdNHi~~~~~g~~~i~~av~~~r~~~~~~~kI-eVEv~slee~~ea~~~gaDiImL------Dn----------- 221 (281)
T PRK06543 160 DAVMAKDNHLAALAAQGLDLTEALRHVRAQLGHTTHV-EVEVDRLDQIEPVLAAGVDTIML------DN----------- 221 (281)
T ss_pred ceEEEeHHHHHHHhCCchHHHHHHHHHHHhCCCCCcE-EEEeCCHHHHHHHHhcCCCEEEE------CC-----------
Confidence 568998322 2222 4566666654 2 233 23567999999999999988732 21
Q ss_pred hhhccCCCcHHHHHHHHHHHHHHcCccHHHHHhccCChhcHHH--hhCCcEeccc
Q 017271 256 DALKRGEDPALSLVSKAYNYIHKYGHKSKLMAAAVRNKQDLFS--LLGVDYIIAP 308 (374)
Q Consensus 256 ~~~~~~~d~Gv~~v~~iy~~~k~~g~~T~vLaAS~Rn~~~i~~--laG~D~lTip 308 (374)
--.+.++++..+++.. ..+-++..-|.+++.+ ..|+|++.+.
T Consensus 222 --------~s~e~l~~av~~~~~~---~~leaSGgI~~~ni~~yA~tGVD~Is~g 265 (281)
T PRK06543 222 --------FSLDDLREGVELVDGR---AIVEASGNVNLNTVGAIASTGVDVISVG 265 (281)
T ss_pred --------CCHHHHHHHHHHhCCC---eEEEEECCCCHHHHHHHHhcCCCEEEeC
Confidence 1244566666655432 2344455568888876 6899998655
No 279
>cd04736 MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-binding domain. MDH is part of a widespread family of homologous FMN-dependent a-hydroxy acid oxidizing enzymes that oxidizes (S)-mandelate to phenylglyoxalate. MDH is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=21.36 E-value=3.4e+02 Score=27.96 Aligned_cols=103 Identities=16% Similarity=0.194 Sum_probs=68.8
Q ss_pred CChhHHHHHHHHHHcCceeEEeecCCHHHHHHHHHcCCcEEEe--chhhhhhhhhcCCCCccchhhhccCCCcHHHHHHH
Q 017271 194 STWQGIEASRLLESEGIQTHLTFVYSFAQAAAAAQAGASVIQI--FVGRLRDWARNHSGDPEIDDALKRGEDPALSLVSK 271 (374)
Q Consensus 194 aT~eGi~A~~~L~~eGI~vN~TlIFS~~QA~aaa~AGas~ISp--FVGRIdd~~~~~~~d~~~~~~~~~~~d~Gv~~v~~ 271 (374)
.||+=|+-++... +.++-+--|.+.+.|..|.++|++.|-+ .=||- .+ +..+.+..+.+
T Consensus 223 ~~w~~i~~ir~~~--~~pviiKgV~~~eda~~a~~~G~d~I~VSnhGGrq------------ld-----~~~~~~~~L~e 283 (361)
T cd04736 223 FNWQDLRWLRDLW--PHKLLVKGIVTAEDAKRCIELGADGVILSNHGGRQ------------LD-----DAIAPIEALAE 283 (361)
T ss_pred CCHHHHHHHHHhC--CCCEEEecCCCHHHHHHHHHCCcCEEEECCCCcCC------------Cc-----CCccHHHHHHH
Confidence 4787555555533 4566666789999999999999876543 22221 11 11235666666
Q ss_pred HHHHHHHcCccHHHH-HhccCChhcHHH--hhCCcEecccHHHHHHHHhCCC
Q 017271 272 AYNYIHKYGHKSKLM-AAAVRNKQDLFS--LLGVDYIIAPLKVLQSLKESAI 320 (374)
Q Consensus 272 iy~~~k~~g~~T~vL-aAS~Rn~~~i~~--laG~D~lTipp~ll~~L~~~~~ 320 (374)
+.+.+ + ..|+ -..+|+-.++.. .+|+|.+.+.-.+|..+...+.
T Consensus 284 i~~~~---~--~~vi~dGGIr~g~Dv~KALaLGA~aV~iGr~~l~~la~~G~ 330 (361)
T cd04736 284 IVAAT---Y--KPVLIDSGIRRGSDIVKALALGANAVLLGRATLYGLAARGE 330 (361)
T ss_pred HHHHh---C--CeEEEeCCCCCHHHHHHHHHcCCCEEEECHHHHHHHHhcCH
Confidence 65433 3 3344 467899999987 5899999999999998865543
No 280
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=21.24 E-value=3e+02 Score=26.63 Aligned_cols=67 Identities=25% Similarity=0.333 Sum_probs=44.5
Q ss_pred ecCCHHHHHHHHHcCCcEEEechhhhhhhhhcCCCCccchhhhccCCCcHHHHHHHHHHHHHHcCccHHHHHhccCChhc
Q 017271 216 FVYSFAQAAAAAQAGASVIQIFVGRLRDWARNHSGDPEIDDALKRGEDPALSLVSKAYNYIHKYGHKSKLMAAAVRNKQD 295 (374)
Q Consensus 216 lIFS~~QA~aaa~AGas~ISpFVGRIdd~~~~~~~d~~~~~~~~~~~d~Gv~~v~~iy~~~k~~g~~T~vLaAS~Rn~~~ 295 (374)
++..+.|...|.++||+.|.....-+. ...+++++++.+..|... | +-+.|.++
T Consensus 119 fi~~~~qi~~a~~~GAD~VlLi~~~l~-----------------------~~~l~~li~~a~~lGl~~--l-vevh~~~E 172 (260)
T PRK00278 119 FIIDPYQIYEARAAGADAILLIVAALD-----------------------DEQLKELLDYAHSLGLDV--L-VEVHDEEE 172 (260)
T ss_pred ecCCHHHHHHHHHcCCCEEEEEeccCC-----------------------HHHHHHHHHHHHHcCCeE--E-EEeCCHHH
Confidence 788889999999999998887654431 135666777777766331 1 12445555
Q ss_pred HHH--hhCCcEeccc
Q 017271 296 LFS--LLGVDYIIAP 308 (374)
Q Consensus 296 i~~--laG~D~lTip 308 (374)
+.. .+|+|++-+.
T Consensus 173 ~~~A~~~gadiIgin 187 (260)
T PRK00278 173 LERALKLGAPLIGIN 187 (260)
T ss_pred HHHHHHcCCCEEEEC
Confidence 543 5799998654
No 281
>COG0635 HemN Coproporphyrinogen III oxidase and related Fe-S oxidoreductases [Coenzyme metabolism]
Probab=21.22 E-value=7e+02 Score=25.95 Aligned_cols=149 Identities=15% Similarity=0.191 Sum_probs=79.3
Q ss_pred ccccChhhhhhhhhhhhHHHHHHHHhcC--CCCeEEEEecCCccCCHHHHHHHHHHHHHHhcCCCCCCCcEEEEecCCh-
Q 017271 120 CELENSELRLSCFFNKALVNVGGDLAKM--VPGRVSTEVDARLAYDTHGIIRKVHDLLKLYSEIDVPPERLLFKIPSTW- 196 (374)
Q Consensus 120 ~~l~~~d~~~a~~~~~~~v~~g~eil~~--v~G~VS~EVdp~la~D~e~~I~eA~~L~~l~~~~gv~~~nVlIKIPaT~- 196 (374)
.|.++|..-....+.+.+..+- +..+. .+-.+++|+||+- .+.+ -.+.+++.||+ ||=+=|=+-.
T Consensus 93 ~GGGTPslL~~~~l~~ll~~l~-~~~~~~~~~~EitiE~nP~~-~~~e--------~~~~l~~~GvN--RiSlGVQsf~~ 160 (416)
T COG0635 93 FGGGTPSLLSPEQLERLLKALR-ELFNDLDPDAEITIEANPGT-VEAE--------KFKALKEAGVN--RISLGVQSFND 160 (416)
T ss_pred ECCCccccCCHHHHHHHHHHHH-HhcccCCCCceEEEEeCCCC-CCHH--------HHHHHHHcCCC--EEEeccccCCH
Confidence 3344444443444444444332 33321 2268999999972 3332 23445667784 6666555533
Q ss_pred -------------hHHHHHHHHHHcCc-eeEEeecCCHH-HH--------HHHHHcCCcEEEechhhhhhhhhcCCCCcc
Q 017271 197 -------------QGIEASRLLESEGI-QTHLTFVYSFA-QA--------AAAAQAGASVIQIFVGRLRDWARNHSGDPE 253 (374)
Q Consensus 197 -------------eGi~A~~~L~~eGI-~vN~TlIFS~~-QA--------~aaa~AGas~ISpFVGRIdd~~~~~~~d~~ 253 (374)
+-..|++.+.+.|+ ++|+-|||.+. |- ..+.+.|+.=||+|==-+..|.+....-..
T Consensus 161 ~~lk~lgR~h~~~~~~~a~~~~~~~g~~~in~DLIyglP~QT~~~~~~~l~~a~~l~pdhis~y~L~~~p~t~~~~~~~~ 240 (416)
T COG0635 161 EVLKALGRIHDEEEAKEAVELARKAGFTSINIDLIYGLPGQTLESLKEDLEQALELGPDHLSLYSLAIEPGTKFAQRKIK 240 (416)
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCHHHHHHHHHHHHhCCCCEEEEeeeecCCCchhhhhccc
Confidence 34677788888775 79999999753 22 224567888888875555544322110000
Q ss_pred chhhhccCCCcHHHHHHHHHHHHHHcCcc
Q 017271 254 IDDALKRGEDPALSLVSKAYNYIHKYGHK 282 (374)
Q Consensus 254 ~~~~~~~~~d~Gv~~v~~iy~~~k~~g~~ 282 (374)
. ..+ +..+.-...-..+.+.+.++||+
T Consensus 241 ~-~~l-P~~d~~~~~~~~~~e~L~~~Gy~ 267 (416)
T COG0635 241 G-KAL-PDEDEKADMYELVEELLEKAGYR 267 (416)
T ss_pred C-CCC-cChHHHHHHHHHHHHHHHHCCCc
Confidence 0 001 11122344455555666777763
No 282
>PRK11320 prpB 2-methylisocitrate lyase; Provisional
Probab=21.08 E-value=8.3e+02 Score=24.34 Aligned_cols=123 Identities=11% Similarity=0.186 Sum_probs=68.6
Q ss_pred CCCeEEEEecCCccCCHHHHHHHHHHHHHHhcCCCCCCCcEEEEecCChhHHHHHHHHHHcCcee--EEee-----cCCH
Q 017271 148 VPGRVSTEVDARLAYDTHGIIRKVHDLLKLYSEIDVPPERLLFKIPSTWQGIEASRLLESEGIQT--HLTF-----VYSF 220 (374)
Q Consensus 148 v~G~VS~EVdp~la~D~e~~I~eA~~L~~l~~~~gv~~~nVlIKIPaT~eGi~A~~~L~~eGI~v--N~Tl-----IFS~ 220 (374)
.+=.|-.-.|+++....++.|++|+.+.+. |. +=|+|=-|.+.+-++.+-+-. ..++ |+|. .+|+
T Consensus 149 ~d~~IiARTDa~~~~g~deAI~Ra~aY~eA----GA--D~ifi~~~~~~~~i~~~~~~~--~~Pl~~n~~~~~~~p~~s~ 220 (292)
T PRK11320 149 PDFVIMARTDALAVEGLDAAIERAQAYVEA----GA--DMIFPEAMTELEMYRRFADAV--KVPILANITEFGATPLFTT 220 (292)
T ss_pred CCeEEEEecCcccccCHHHHHHHHHHHHHc----CC--CEEEecCCCCHHHHHHHHHhc--CCCEEEEeccCCCCCCCCH
Confidence 333444556777767777777776666554 44 567775555555554433322 4556 7763 2454
Q ss_pred HHHHHHHHcCCcEEEechhhhhhhhhcCCCCccchhhhccCCCcHHHHHHHHHHHHHHcCccHHHHHhccCChhcHHHhh
Q 017271 221 AQAAAAAQAGASVIQIFVGRLRDWARNHSGDPEIDDALKRGEDPALSLVSKAYNYIHKYGHKSKLMAAAVRNKQDLFSLL 300 (374)
Q Consensus 221 ~QA~aaa~AGas~ISpFVGRIdd~~~~~~~d~~~~~~~~~~~d~Gv~~v~~iy~~~k~~g~~T~vLaAS~Rn~~~i~~la 300 (374)
++ ..+.|..+|+.-..-+. ..+..+++++..+++.|..-. ..-..-..+++.++.
T Consensus 221 ~~---L~~lGv~~v~~~~~~~~---------------------aa~~a~~~~~~~l~~~g~~~~-~~~~~~~~~~~~~~~ 275 (292)
T PRK11320 221 EE---LASAGVAMVLYPLSAFR---------------------AMNKAAENVYEAIRRDGTQKA-VVDTMQTREELYEYL 275 (292)
T ss_pred HH---HHHcCCcEEEEChHHHH---------------------HHHHHHHHHHHHHHHcCCccc-chhccCCHHHHHHhc
Confidence 44 56779888776544332 245666777777776653111 111223455566666
Q ss_pred CCc
Q 017271 301 GVD 303 (374)
Q Consensus 301 G~D 303 (374)
|-+
T Consensus 276 g~~ 278 (292)
T PRK11320 276 GYH 278 (292)
T ss_pred CcH
Confidence 644
No 283
>COG1850 RbcL Ribulose 1,5-bisphosphate carboxylase, large subunit [Carbohydrate transport and metabolism]
Probab=20.89 E-value=1.7e+02 Score=30.70 Aligned_cols=58 Identities=17% Similarity=0.252 Sum_probs=45.2
Q ss_pred CC-eEEEEecCCccCCHHHHHHHHHHHHHHhcCCCCCCCcEEEEecCC-hhHHHHHHHHHHcCceeEE
Q 017271 149 PG-RVSTEVDARLAYDTHGIIRKVHDLLKLYSEIDVPPERLLFKIPST-WQGIEASRLLESEGIQTHL 214 (374)
Q Consensus 149 ~G-~VS~EVdp~la~D~e~~I~eA~~L~~l~~~~gv~~~nVlIKIPaT-~eGi~A~~~L~~eGI~vN~ 214 (374)
+| ....-++ +..+.++|++.|+...++. .+-+||-|=+| |-+++.+++.+..|+.+++
T Consensus 220 TGekk~y~~N--ITa~~~EM~rrae~a~elG------~~~~midi~~~G~~a~q~lre~~d~gl~iha 279 (429)
T COG1850 220 TGEKKMYAVN--ITAPCEEMMRRAELAAELG------ANYVMIDIVVTGFTALQYLREDEDIGLAIHA 279 (429)
T ss_pred hCceEEEEee--ccCCHHHHHHHHHHHHHcC------CCEEEEEEEecccHHHHHHHhcccCCceEEe
Confidence 35 3444454 4566999999999988885 47899999988 8999999999777877654
No 284
>COG3958 Transketolase, C-terminal subunit [Carbohydrate transport and metabolism]
Probab=20.80 E-value=91 Score=31.48 Aligned_cols=34 Identities=26% Similarity=0.415 Sum_probs=28.4
Q ss_pred CChhHHHHHHHHHHcCceeEEeecCCH----HHHHHHH
Q 017271 194 STWQGIEASRLLESEGIQTHLTFVYSF----AQAAAAA 227 (374)
Q Consensus 194 aT~eGi~A~~~L~~eGI~vN~TlIFS~----~QA~aaa 227 (374)
.+|+.++|+++|+++||++-+-=+||. +|++..+
T Consensus 203 mv~~al~AA~~L~~~GIsa~Vi~m~tIKPiD~~~i~~~ 240 (312)
T COG3958 203 MVAEALEAAEILKKEGISAAVINMFTIKPIDEQAILKA 240 (312)
T ss_pred chHHHHHHHHHHHhcCCCEEEEecCccCCCCHHHHHHH
Confidence 478999999999999999999999996 4555543
No 285
>cd07942 DRE_TIM_LeuA Mycobacterium tuberculosis LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Alpha-isopropylmalate synthase (LeuA), a key enzyme in leucine biosynthesis, catalyzes the first committed step in the pathway, converting acetyl-CoA and alpha-ketoisovalerate to alpha-isopropyl malate and CoA. Although the reaction catalyzed by LeuA is similar to that of the Arabidopsis thaliana IPMS1 protein, the two fall into phylogenetically distinct families within the same superfamily. LeuA has and N-terminal TIM barrel catalytic domain, a helical linker domain, and a C-terminal regulatory domain. LeuA forms a homodimer in which the linker domain of one monomer sits over the catalytic domain of the other, inserting residues into the active site that may be important for catalysis. Homologs of LeuA are found in bacteria as well as fungi. This family includes alpha-isopropylmalate synthases I (LEU4) and II (LEU9) from Saccharomyces cerevisiae. This family belong
Probab=20.57 E-value=8.3e+02 Score=24.11 Aligned_cols=108 Identities=14% Similarity=0.179 Sum_probs=64.7
Q ss_pred ccCCHHHHHHHHHHHHHHhcCCCCCCCcEEEEecCChhHH-HHHHHHHHcCc---eeE-EeecCCHHH-HHHHHHc--CC
Q 017271 160 LAYDTHGIIRKVHDLLKLYSEIDVPPERLLFKIPSTWQGI-EASRLLESEGI---QTH-LTFVYSFAQ-AAAAAQA--GA 231 (374)
Q Consensus 160 la~D~e~~I~eA~~L~~l~~~~gv~~~nVlIKIPaT~eGi-~A~~~L~~eGI---~vN-~TlIFS~~Q-A~aaa~A--Ga 231 (374)
..+++++-++=|+.|.++ || +.+=+=.|+.-+.- ++++.+.+.|- .+. ..++=...+ ...|.++ |+
T Consensus 18 ~~~s~~~Ki~ia~~L~~~----Gv--~~IE~gfP~~~~~e~e~~~~i~~~~~~~~~~~~~al~r~~~~die~a~~~~~~~ 91 (284)
T cd07942 18 EPMSVEQKLRFFKLLVKI----GF--KEIEVGFPSASQTDFDFVRELIEEDLIPDDVTIQVLTQAREDLIERTFEALRGA 91 (284)
T ss_pred CCCCHHHHHHHHHHHHHc----CC--CEEEEeCCCCCHHHHHHHHHHHHccCCCCCCEEEEEcCCChhhHHHHHHHhCCC
Confidence 456777777766666655 56 55555569877665 89999966643 222 255555555 5566666 55
Q ss_pred c--EEEechhhhhhhhhcCCCCccchhhhccCCCcHHHHHHHHHHHHHHcCcc
Q 017271 232 S--VIQIFVGRLRDWARNHSGDPEIDDALKRGEDPALSLVSKAYNYIHKYGHK 282 (374)
Q Consensus 232 s--~ISpFVGRIdd~~~~~~~d~~~~~~~~~~~d~Gv~~v~~iy~~~k~~g~~ 282 (374)
. .+..|++==+-+..++.+ ...+..++.++++.+|.+.+|.+
T Consensus 92 ~~~~v~i~~~~Sd~h~~~~~~---------~s~~e~~~~~~~~v~~a~~~g~~ 135 (284)
T cd07942 92 KKAIVHLYNATSPLQRRVVFG---------KSKEEIIEIAVDGAKLVKELAAK 135 (284)
T ss_pred CCCEEEEEEcCCHHHHHHHhC---------CCHHHHHHHHHHHHHHHHHhccc
Confidence 4 577775432222221111 11234678888888898888744
No 286
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=20.44 E-value=6.3e+02 Score=26.92 Aligned_cols=59 Identities=12% Similarity=0.080 Sum_probs=36.9
Q ss_pred HHHhcCCCCCCCcEEEEecCCh--hHHHHHHHHHHcCceeEEeecCCHH----------HHHHHHHcCCcEEE
Q 017271 175 LKLYSEIDVPPERLLFKIPSTW--QGIEASRLLESEGIQTHLTFVYSFA----------QAAAAAQAGASVIQ 235 (374)
Q Consensus 175 ~~l~~~~gv~~~nVlIKIPaT~--eGi~A~~~L~~eGI~vN~TlIFS~~----------QA~aaa~AGas~IS 235 (374)
++...+.|+ +.+-|=+|.++ .-.++++...+.|..+..++.|+.. -+..+.++|+..|+
T Consensus 101 v~~A~~~Gv--d~irif~~lnd~~n~~~~i~~ak~~G~~v~~~i~~t~~p~~t~e~~~~~a~~l~~~Gad~I~ 171 (467)
T PRK14041 101 VKKVAEYGL--DIIRIFDALNDIRNLEKSIEVAKKHGAHVQGAISYTVSPVHTLEYYLEFARELVDMGVDSIC 171 (467)
T ss_pred HHHHHHCCc--CEEEEEEeCCHHHHHHHHHHHHHHCCCEEEEEEEeccCCCCCHHHHHHHHHHHHHcCCCEEE
Confidence 333445567 45666667776 3456777777889999888775533 23334566876543
No 287
>PRK14057 epimerase; Provisional
Probab=20.26 E-value=1.3e+02 Score=29.50 Aligned_cols=129 Identities=9% Similarity=0.037 Sum_probs=71.6
Q ss_pred HHHHHHhcCCCCCCCcEEEEecCChhHHHHHHHHHHcCcee-------EEeecCCHHHHHHHHHcCCcEEEechhhhhhh
Q 017271 172 HDLLKLYSEIDVPPERLLFKIPSTWQGIEASRLLESEGIQT-------HLTFVYSFAQAAAAAQAGASVIQIFVGRLRDW 244 (374)
Q Consensus 172 ~~L~~l~~~~gv~~~nVlIKIPaT~eGi~A~~~L~~eGI~v-------N~TlIFS~~QA~aaa~AGas~ISpFVGRIdd~ 244 (374)
.+.++.|.+.|. +.|.|=+=++..-.+.++.+++.|+++ -+-+.+.+.--. ..+-+|+..+|--
T Consensus 88 ~~~i~~~~~aGa--d~It~H~Ea~~~~~~~l~~Ir~~G~k~~~~~~~~kaGlAlnP~Tp~-------e~i~~~l~~vD~V 158 (254)
T PRK14057 88 WTAAQACVKAGA--HCITLQAEGDIHLHHTLSWLGQQTVPVIGGEMPVIRGISLCPATPL-------DVIIPILSDVEVI 158 (254)
T ss_pred HHHHHHHHHhCC--CEEEEeeccccCHHHHHHHHHHcCCCcccccccceeEEEECCCCCH-------HHHHHHHHhCCEE
Confidence 334444444444 678888888877678888888888741 112222221111 1112233322211
Q ss_pred hhcCCCCccchhhhccCCCcHHHHHHHHHHHHHHcCccHHHHHhccCChhcHHH--hhCCcEecccHHHH
Q 017271 245 ARNHSGDPEIDDALKRGEDPALSLVSKAYNYIHKYGHKSKLMAAAVRNKQDLFS--LLGVDYIIAPLKVL 312 (374)
Q Consensus 245 ~~~~~~d~~~~~~~~~~~d~Gv~~v~~iy~~~k~~g~~T~vLaAS~Rn~~~i~~--laG~D~lTipp~ll 312 (374)
.- -..+++.. . ..-....+.-++++.++++++|+++.+.+-..-|.+.+-. .+|+|++...-.++
T Consensus 159 Lv-MtV~PGfg-G-Q~Fi~~~l~KI~~lr~~~~~~~~~~~IeVDGGI~~~ti~~l~~aGad~~V~GSalF 225 (254)
T PRK14057 159 QL-LAVNPGYG-S-KMRSSDLHERVAQLLCLLGDKREGKIIVIDGSLTQDQLPSLIAQGIDRVVSGSALF 225 (254)
T ss_pred EE-EEECCCCC-c-hhccHHHHHHHHHHHHHHHhcCCCceEEEECCCCHHHHHHHHHCCCCEEEEChHhh
Confidence 00 00000000 0 0001235677888888888888888888888888888866 59999998886665
No 288
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=20.20 E-value=3.5e+02 Score=27.46 Aligned_cols=126 Identities=13% Similarity=0.066 Sum_probs=75.2
Q ss_pred HHHHHHHHHHHhcCCCCCCCcEEEEec--CChhHHHHHHHHHHc--CceeEEeecCCHHHHHHHHHcCCcEE--Eechhh
Q 017271 167 IIRKVHDLLKLYSEIDVPPERLLFKIP--STWQGIEASRLLESE--GIQTHLTFVYSFAQAAAAAQAGASVI--QIFVGR 240 (374)
Q Consensus 167 ~I~eA~~L~~l~~~~gv~~~nVlIKIP--aT~eGi~A~~~L~~e--GI~vN~TlIFS~~QA~aaa~AGas~I--SpFVGR 240 (374)
..+++.+|++. |+..+-|.|-+. -...-.+.++++.+. ++.+-+-=|-|.+.+..+.++|+..+ +---||
T Consensus 98 ~~~~~~~Lv~a----g~~~d~i~iD~a~gh~~~~~e~I~~ir~~~p~~~vi~g~V~t~e~a~~l~~aGad~i~vg~~~G~ 173 (326)
T PRK05458 98 EYDFVDQLAAE----GLTPEYITIDIAHGHSDSVINMIQHIKKHLPETFVIAGNVGTPEAVRELENAGADATKVGIGPGK 173 (326)
T ss_pred HHHHHHHHHhc----CCCCCEEEEECCCCchHHHHHHHHHHHhhCCCCeEEEEecCCHHHHHHHHHcCcCEEEECCCCCc
Confidence 45666666664 232244444322 223345667777765 47766644669999999999998773 334466
Q ss_pred hhhhhhcCCCCccchhhhccCCCc--HHHHHHHHHHHHHHcCccHHHHH-hccCChhcHHH--hhCCcEecccHHHH
Q 017271 241 LRDWARNHSGDPEIDDALKRGEDP--ALSLVSKAYNYIHKYGHKSKLMA-AAVRNKQDLFS--LLGVDYIIAPLKVL 312 (374)
Q Consensus 241 Idd~~~~~~~d~~~~~~~~~~~d~--Gv~~v~~iy~~~k~~g~~T~vLa-AS~Rn~~~i~~--laG~D~lTipp~ll 312 (374)
+...-... ....+ ++..++++.+.. +..|++ -.+|+..++.. .+|+|.+.+.-.++
T Consensus 174 ~~~t~~~~-----------g~~~~~w~l~ai~~~~~~~-----~ipVIAdGGI~~~~Di~KaLa~GA~aV~vG~~~~ 234 (326)
T PRK05458 174 VCITKIKT-----------GFGTGGWQLAALRWCAKAA-----RKPIIADGGIRTHGDIAKSIRFGATMVMIGSLFA 234 (326)
T ss_pred cccccccc-----------CCCCCccHHHHHHHHHHHc-----CCCEEEeCCCCCHHHHHHHHHhCCCEEEechhhc
Confidence 62211000 01123 565666666433 234554 56889999987 47999998886654
Done!