BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017272
(374 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9SAC0|ZCIS_ARATH 15-cis-zeta-carotene isomerase, chloroplastic OS=Arabidopsis
thaliana GN=Z-ISO PE=1 SV=1
Length = 367
Score = 513 bits (1322), Expect = e-145, Method: Compositional matrix adjust.
Identities = 241/319 (75%), Positives = 281/319 (88%), Gaps = 3/319 (0%)
Query: 58 PAKQKIVLVRS--RTETGSGTDSDTDLATLAGEDSAAFDLKNQKLTSWVYFSVILGVVLF 115
P +KI LVRS R + +DS++ L GEDSAAF+L QKL SWVYF V+LGVVLF
Sbjct: 50 PVIRKI-LVRSTLREDQPIASDSESSPTLLIGEDSAAFELGKQKLVSWVYFGVVLGVVLF 108
Query: 116 LLQLLWIDNSTGYGKAFIDSVSSLSDSHEVVMLVLILIFATVHSGLASLRDMGEKVIGAR 175
+L ++WIDNSTG+GK+FID+VS++S S EV ML+LILIFA VHSGLASLRD+GEK+IG R
Sbjct: 109 ILNVVWIDNSTGFGKSFIDAVSNISGSPEVAMLMLILIFAIVHSGLASLRDIGEKLIGER 168
Query: 176 AYRVLFAGVSLPLAVSTIVYFINHRYDGMQLWQLQGAPGVHQIVWLSSFVSFFFLYPSTF 235
A+RVLFAG+SLPLA+STIVYFINHRYDG QLWQLQG PGVH+ +W+++FVSFFFLYPSTF
Sbjct: 169 AFRVLFAGISLPLAMSTIVYFINHRYDGSQLWQLQGVPGVHEAIWVANFVSFFFLYPSTF 228
Query: 236 NLLEVAAVDEPKMHLWETGVMRITRHPQMVGQVIWCLAHTLWIGNSVAAAASLGLIGHHL 295
NLLEVAAVD+PKMHLWETG+MRITRHPQMVGQ++WCLAHTLWIGN+VAA+ASLGLI HHL
Sbjct: 229 NLLEVAAVDKPKMHLWETGIMRITRHPQMVGQIVWCLAHTLWIGNTVAASASLGLIAHHL 288
Query: 296 FGVWNGDKRLATRYGEAFEAVKRRTSVIPFAAIITGRQILPKDYYKEFIRLPYLTITALT 355
FG WNGD+RLA RYGE FE++K+RTSVIPFAAI GRQ+LP+DYYKEF+RLPYL ITALT
Sbjct: 289 FGAWNGDRRLAKRYGEDFESIKKRTSVIPFAAIFEGRQVLPEDYYKEFVRLPYLAITALT 348
Query: 356 LGAYIAHPLMQSASFLLHW 374
+GAY AHPLMQ ASF LHW
Sbjct: 349 VGAYFAHPLMQGASFRLHW 367
>sp|B4FHU1|ZCIS_MAIZE 15-cis-zeta-carotene isomerase, chloroplastic OS=Zea mays PE=1 SV=1
Length = 366
Score = 458 bits (1179), Expect = e-128, Method: Compositional matrix adjust.
Identities = 224/331 (67%), Positives = 270/331 (81%), Gaps = 1/331 (0%)
Query: 45 APPCPLT-LFFNSNPAKQKIVLVRSRTETGSGTDSDTDLATLAGEDSAAFDLKNQKLTSW 103
AP PL+ + ++ PA+ + + + D L GEDSAAF+LK+Q + SW
Sbjct: 36 APLPPLSRVLSHARPARAVGGGIEPKEGVVAEGDESGGGPVLVGEDSAAFELKDQSVASW 95
Query: 104 VYFSVILGVVLFLLQLLWIDNSTGYGKAFIDSVSSLSDSHEVVMLVLILIFATVHSGLAS 163
YF+ ILG VL L +LWID STG G F+D+V+S+SDSHEVVML+L +IFA VHSG+AS
Sbjct: 96 AYFAGILGAVLVALNVLWIDPSTGVGTKFLDAVASVSDSHEVVMLLLTIIFAVVHSGMAS 155
Query: 164 LRDMGEKVIGARAYRVLFAGVSLPLAVSTIVYFINHRYDGMQLWQLQGAPGVHQIVWLSS 223
LR+ GEK++G R YRVLFAG+SLPLAV+TIVYFINHRYDG QLWQ+QG G+H+++W SS
Sbjct: 156 LRESGEKIVGERVYRVLFAGISLPLAVTTIVYFINHRYDGTQLWQVQGITGIHELLWFSS 215
Query: 224 FVSFFFLYPSTFNLLEVAAVDEPKMHLWETGVMRITRHPQMVGQVIWCLAHTLWIGNSVA 283
F+SFFFLYPSTFNLLEVAAVD+PK+H+WETG+MRITRHPQMVGQVIWCLAHTLWIGNSVA
Sbjct: 216 FISFFFLYPSTFNLLEVAAVDKPKLHMWETGIMRITRHPQMVGQVIWCLAHTLWIGNSVA 275
Query: 284 AAASLGLIGHHLFGVWNGDKRLATRYGEAFEAVKRRTSVIPFAAIITGRQILPKDYYKEF 343
AAS+GLI HHLFG WNGD+RL +RYGEAFE +K+RTSV+PFAAII GRQ LPKDY+KEF
Sbjct: 276 VAASVGLISHHLFGAWNGDRRLLSRYGEAFEVLKKRTSVMPFAAIIDGRQKLPKDYHKEF 335
Query: 344 IRLPYLTITALTLGAYIAHPLMQSASFLLHW 374
RLPY+ IT LTLGAY AHPLMQ++S+ L W
Sbjct: 336 FRLPYVAITMLTLGAYFAHPLMQASSYQLPW 366
>sp|Q70LC2|Y807_AFV1Y Putative transmembrane protein ORF807 OS=Acidianus filamentous
virus 1 (isolate United States/Yellowstone) GN=ORF807
PE=4 SV=1
Length = 807
Score = 37.4 bits (85), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 51/101 (50%), Gaps = 8/101 (7%)
Query: 143 HEVVMLVLILIFATVHSGLASLRDMGEKVIGARAYRVLFAGVSLPLAVSTIVYFINHRYD 202
+EV+ML+ +LI+A + AS D ++G + AGV+ + V+ IVYF +Y
Sbjct: 208 YEVLMLICLLIYAGCY---ASYSD----ILGKNGLSTVGAGVNAKVPVTAIVYFDTQQYI 260
Query: 203 GMQLW-QLQGAPGVHQIVWLSSFVSFFFLYPSTFNLLEVAA 242
+ QL ++ ++W+ + F + P +L++ +
Sbjct: 261 QQNVVSQLNVTIQLYALIWVGISTTNFVILPEISQILKMPS 301
>sp|A0A393|YCF1_COFAR Putative membrane protein ycf1 OS=Coffea arabica GN=ycf1 PE=3 SV=1
Length = 1874
Score = 34.7 bits (78), Expect = 1.1, Method: Composition-based stats.
Identities = 12/29 (41%), Positives = 21/29 (72%)
Query: 323 IPFAAIITGRQILPKDYYKEFIRLPYLTI 351
IPFA +I G ++ + +++++IRLP L I
Sbjct: 820 IPFAQVIRGSMLISQSFFRKYIRLPVLII 848
>sp|P87014|MAM4_SCHPO Protein-S-isoprenylcysteine O-methyltransferase
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=mam4 PE=3 SV=1
Length = 236
Score = 34.3 bits (77), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 41/90 (45%), Gaps = 5/90 (5%)
Query: 239 EVAAVDEPKMHLWET-GVMRITRHPQMVGQVIWCLAHTLWIGNSVAAAASLGLIGHHLFG 297
+ A K HL T G+ RHP VG IW L + +GN V+ L+ F
Sbjct: 145 HIVASKRNKDHLLVTDGIYAYVRHPSYVGFFIWALGTQMLLGNFVSTLL-FSLVLWKFFS 203
Query: 298 --VWNGDKRLATRYGEAFEAVKRRT-SVIP 324
+ + L + +G+++E +++ S IP
Sbjct: 204 QRITTEEAYLVSFFGDSYEQYRKKVPSGIP 233
>sp|Q9LSF0|PTR34_ARATH Probable peptide/nitrate transporter At3g25260 OS=Arabidopsis
thaliana GN=At3g25260 PE=2 SV=1
Length = 515
Score = 33.5 bits (75), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 30/51 (58%), Gaps = 4/51 (7%)
Query: 96 KNQKLTS----WVYFSVILGVVLFLLQLLWIDNSTGYGKAFIDSVSSLSDS 142
+NQ+L S W +FSV LG L + ++WI+ + G+ +F S + L+ +
Sbjct: 164 RNQRLISGFFNWYFFSVCLGGFLAVTLMVWIEENIGWSSSFTISTAVLASA 214
>sp|Q9LSE8|PTR35_ARATH Putative peptide/nitrate transporter At3g25280 OS=Arabidopsis
thaliana GN=At3g25280 PE=1 SV=1
Length = 521
Score = 32.3 bits (72), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 4/64 (6%)
Query: 83 ATLAGEDSAAFDLKNQKLTS----WVYFSVILGVVLFLLQLLWIDNSTGYGKAFIDSVSS 138
A+L D +N +L S W+YFS+ G +L + +LWI+ G+ +F SV
Sbjct: 151 ASLPSHGGDQIDRRNPRLISRFFDWLYFSICSGCLLAVTVVLWIEEKKGWIWSFNISVGI 210
Query: 139 LSDS 142
L+ +
Sbjct: 211 LATA 214
>sp|Q6CBS9|ATG27_YARLI Autophagy-related protein 27 OS=Yarrowia lipolytica (strain CLIB
122 / E 150) GN=ATG27 PE=3 SV=1
Length = 276
Score = 32.0 bits (71), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Query: 102 SWVYFSVILGVVLFLLQLLWIDNSTGYGKAFIDSVSSLSDSHEVVMLVLILIFATVHSGL 161
+W++ ++LGV ++++ WI N YG A +D + +V L+ LI V +
Sbjct: 208 TWLFIIIVLGVAVYIIGNAWI-NYDRYGNAGVDLLPHADSLRDVPYLIRDLIAKVVGTFT 266
Query: 162 ASLR 165
S R
Sbjct: 267 GSSR 270
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.324 0.136 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 131,758,942
Number of Sequences: 539616
Number of extensions: 5278294
Number of successful extensions: 17119
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 17110
Number of HSP's gapped (non-prelim): 20
length of query: 374
length of database: 191,569,459
effective HSP length: 119
effective length of query: 255
effective length of database: 127,355,155
effective search space: 32475564525
effective search space used: 32475564525
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 62 (28.5 bits)