Query 017272
Match_columns 374
No_of_seqs 187 out of 492
Neff 4.7
Searched_HMMs 29240
Date Mon Mar 25 11:46:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017272.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017272hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4a2n_B Isoprenylcysteine carbo 99.7 5.4E-16 1.8E-20 141.6 12.9 80 246-325 111-192 (194)
2 1p58_D Envelope protein M; fla 33.7 37 0.0013 26.5 3.6 33 258-291 36-68 (75)
3 4efh_B Protein spire; cytoskel 24.7 14 0.00048 28.4 -0.3 37 13-52 2-41 (66)
4 2wdq_C Succinate dehydrogenase 16.1 1.9E+02 0.0064 23.8 4.9 45 150-194 75-124 (129)
5 3j27_B Matrix protein, small e 14.3 1.2E+02 0.0039 23.6 2.9 33 258-291 36-68 (75)
6 3vr8_C Cytochrome B-large subu 6.5 5.5E+02 0.019 22.9 4.7 45 149-194 121-170 (188)
7 1qfw_M FV, antibody (anti beta 6.0 5.1E+02 0.017 19.1 3.7 17 30-46 13-29 (108)
8 1kqf_C FDH-N gamma, formate de 5.6 3.4E+02 0.012 23.5 2.8 61 97-162 112-173 (217)
9 1y32_A Humanin; solution struc 5.3 58 0.002 20.5 -1.7 8 5-12 7-14 (26)
10 3flk_A Tartrate dehydrogenase/ 4.8 3.9E+02 0.013 26.2 2.8 29 40-71 110-138 (364)
No 1
>4a2n_B Isoprenylcysteine carboxyl methyltransferase; membrane protein, RAS and RHO gtpases signallin; HET: SAH PLM CDL; 3.40A {Methanosarcina acetivorans}
Probab=99.66 E-value=5.4e-16 Score=141.60 Aligned_cols=80 Identities=16% Similarity=0.280 Sum_probs=68.6
Q ss_pred CccccccccccccccchhHHHHHHHHHHHHhhhccHHHHHH-HHHHHHHHHHhhhhhhcHHHHHhcHhHHHHHhhcC-CC
Q 017272 246 PKMHLWETGVMRITRHPQMVGQVIWCLAHTLWIGNSVAAAA-SLGLIGHHLFGVWNGDKRLATRYGEAFEAVKRRTS-VI 323 (374)
Q Consensus 246 P~~~Lv~tGIyritRHPmylG~~LWalaHlL~nGdlasLlL-fg~llayal~Gi~~eERRL~r~fGe~y~~Y~~~Tp-~i 323 (374)
++.+++++|+||++|||+|+|.++|.++..+..++...+++ ...++.....++..|||+++++||++|++|+++|| ++
T Consensus 111 ~~~~Lvt~G~y~~vRHP~Y~G~~l~~~g~~l~~~s~~~~~~~~~~~~~~~~~ri~~EE~~L~~~fG~~Y~~Y~~rv~r~i 190 (194)
T 4a2n_B 111 DGHKLVKEGIYKNIRHPMYAHLWLWVITQGIILSNWVVLIFGIVAWAILYFIRVPKEEELLIEEFGDEYIEYMGKTGRLF 190 (194)
T ss_dssp TTCCCCCSSTTTTBSSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHCBSSS
T ss_pred CCCeeeecCcchhccCccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHhCCeeC
Confidence 34589999999999999999999999999999999887764 33444455788999999999999999999999997 67
Q ss_pred cc
Q 017272 324 PF 325 (374)
Q Consensus 324 PF 325 (374)
|+
T Consensus 191 P~ 192 (194)
T 4a2n_B 191 PK 192 (194)
T ss_dssp CC
T ss_pred ce
Confidence 75
No 2
>1p58_D Envelope protein M; flavivirus, flaviviridae, glycoprotein E from borne encephalitis virus, membrane protein M, cryo-EM, ICOS virus; 9.50A {Dengue virus 2 puerto rico} SCOP: i.17.1.1
Probab=33.73 E-value=37 Score=26.46 Aligned_cols=33 Identities=24% Similarity=0.118 Sum_probs=22.9
Q ss_pred cccchhHHHHHHHHHHHHhhhccHHHHHHHHHHH
Q 017272 258 ITRHPQMVGQVIWCLAHTLWIGNSVAAAASLGLI 291 (374)
Q Consensus 258 itRHPmylG~~LWalaHlL~nGdlasLlLfg~ll 291 (374)
+.|||.|..++. ++++++-..+.-.+++.+.++
T Consensus 36 ilrNp~~al~a~-~~~w~lG~~~~Qrvi~~il~l 68 (75)
T 1p58_D 36 ILRHPGFTIMAA-ILAYTIGTTHFQRVLIFILLT 68 (75)
T ss_pred HHHChHHHHHHH-HHHHHHcCChHHHHHHHHHHH
Confidence 469999988777 777777655665666555544
No 3
>4efh_B Protein spire; cytoskeleton, contractIle protein, contractIle protein-trans protein complex; HET: ADP; 2.48A {Drosophila melanogaster} PDB: 3ue5_B*
Probab=24.72 E-value=14 Score=28.39 Aligned_cols=37 Identities=24% Similarity=0.130 Sum_probs=22.1
Q ss_pred ccchhHhhhhhccccc---ccCccceeeEeeecccCCCCCccc
Q 017272 13 VPRIKKEAFANIRTKR---DASTSASVSISCKLKPAPPCPLTL 52 (374)
Q Consensus 13 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 52 (374)
-||+||.|.+-|-... -.-.-+ -.-|+||.++++.++
T Consensus 2 pprvkk~AheiILefiRSrppL~~v---s~rklkp~~~~~~sL 41 (66)
T 4efh_B 2 PLGSKKDAHAMILEFIRSRPPLKKA---SDRQLGPPRMCEPSP 41 (66)
T ss_pred CCcccccHHHHHHHHHhcccchhhh---hhcccCCCCCCcCCH
Confidence 3899999877654332 111111 234688888887766
No 4
>2wdq_C Succinate dehydrogenase cytochrome B556 subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_C* 2acz_C* 1nek_C* 2wdr_C* 2wdv_C* 2wp9_C* 2ws3_C* 2wu5_C* 2wu2_C*
Probab=16.12 E-value=1.9e+02 Score=23.79 Aligned_cols=45 Identities=11% Similarity=0.034 Sum_probs=25.6
Q ss_pred HHHHHHHHhhCcchhhhHHHHh-hcc----cchhhHHHHHHHHHHHHHHH
Q 017272 150 LILIFATVHSGLASLRDMGEKV-IGA----RAYRVLFAGVSLPLAVSTIV 194 (374)
Q Consensus 150 lLllF~~~HSllaslR~~li~~-lG~----~~YR~lYSLLSLv~LvliI~ 194 (374)
..++++..|=...++|.-+... .|. ..++..|.++.+..+..++.
T Consensus 75 ~~~~~a~~yH~~nGiRhl~~D~G~g~~~~~~~~~~~~~vl~~s~vlt~~~ 124 (129)
T 2wdq_C 75 WGILTALAYHVVVGIRHMMMDFGYLEETFEAGKRSAKISFVITVVLSLLA 124 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSSCCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555566788766664 221 34777787776655444443
No 5
>3j27_B Matrix protein, small envelope protein M; flavivirus, fusion protein, protein complex, membrane, chape virus; HET: NAG; 3.60A {Dengue virus 2} PDB: 3j2p_B* 1p58_D
Probab=14.31 E-value=1.2e+02 Score=23.61 Aligned_cols=33 Identities=27% Similarity=0.134 Sum_probs=20.6
Q ss_pred cccchhHHHHHHHHHHHHhhhccHHHHHHHHHHH
Q 017272 258 ITRHPQMVGQVIWCLAHTLWIGNSVAAAASLGLI 291 (374)
Q Consensus 258 itRHPmylG~~LWalaHlL~nGdlasLlLfg~ll 291 (374)
+.|||.|..++.- +++++-..+.-.+++...++
T Consensus 36 ilrNp~~al~~~~-~~w~lG~~~~Qrvi~iil~l 68 (75)
T 3j27_B 36 ILRHPGFTIMAAI-LAYTIGTTHFQRALIFILLT 68 (75)
T ss_dssp HHHCCTHHHHHHH-HHHHSSCSSHHHHHHHHHHH
T ss_pred HHHChHHHHHHHH-HHHHHcCChHHHHHHHHHHH
Confidence 4699999776543 55666655555666555444
No 6
>3vr8_C Cytochrome B-large subunit; membrane protein, reductase, mitochondria MEMB oxidoreductase; HET: FAD HEM RQX EPH; 2.81A {Ascaris suum} PDB: 3vrb_C*
Probab=6.51 E-value=5.5e+02 Score=22.93 Aligned_cols=45 Identities=22% Similarity=0.331 Sum_probs=26.7
Q ss_pred HHHHHHHHHhhCcchhhhHHHHhhcc-----cchhhHHHHHHHHHHHHHHH
Q 017272 149 VLILIFATVHSGLASLRDMGEKVIGA-----RAYRVLFAGVSLPLAVSTIV 194 (374)
Q Consensus 149 llLllF~~~HSllaslR~~li~~lG~-----~~YR~lYSLLSLv~LvliI~ 194 (374)
...++|+..|=...++|.-+... |. ..|+..|.++.+..+.-+..
T Consensus 121 k~~l~~a~~yH~~nGIRHLiwD~-G~gl~l~~~~~sg~~vl~lSvvltl~l 170 (188)
T 3vr8_C 121 KFIIAFPIAFHTLNGIRFIGFDM-AKGTDIPSIYRGAYLVLGLAALISLAV 170 (188)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHh-cccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445666666677788765543 43 24778777776655443333
No 7
>1qfw_M FV, antibody (anti beta subunit) (light chain); glycoprotein hormone; HET: NAG; 3.50A {Mus musculus} SCOP: b.1.1.1
Probab=5.97 E-value=5.1e+02 Score=19.07 Aligned_cols=17 Identities=29% Similarity=0.462 Sum_probs=12.9
Q ss_pred cCccceeeEeeecccCC
Q 017272 30 ASTSASVSISCKLKPAP 46 (374)
Q Consensus 30 ~~~~~~~~~~~~~~~~~ 46 (374)
+....+|.|.|..+..+
T Consensus 13 v~~G~~v~L~C~~~~~~ 29 (108)
T 1qfw_M 13 MSVGERVTLSCKASETV 29 (108)
T ss_dssp CCTTCCEEEEEEESSCC
T ss_pred EcCCCCEEEEeeeCCCC
Confidence 34556899999988765
No 8
>1kqf_C FDH-N gamma, formate dehydrogenase, nitrate-inducible, cytochr B556(FDN) subunit; oxidoreductase, selenium, selenocysteine, seCys, molybdenum; HET: MGD HEM CDL; 1.60A {Escherichia coli} SCOP: f.21.1.1 PDB: 1kqg_C*
Probab=5.57 E-value=3.4e+02 Score=23.51 Aligned_cols=61 Identities=18% Similarity=0.266 Sum_probs=28.8
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHhcccCCCcccccccccC-CCchHHHHHHHHHHHHHHHhhCcc
Q 017272 97 NQKLTSWVYFSVILGVVLFLLQLLWIDNSTGYGKAFIDSVSS-LSDSHEVVMLVLILIFATVHSGLA 162 (374)
Q Consensus 97 ~~~~~~~~~~~~~l~~~~~~~~~~w~~~~~~~~~~~~d~~~~-~s~~~~lilillLllF~~~HSlla 162 (374)
-||+.-|..+..++..++..+. +|.. +++..+.+.... ....|++ ...++++|.+.|..++
T Consensus 112 ~~~~~~~~l~~l~~~~~~TG~~-~~~~---~~~~~~~~~~~~~~~~iH~~-~a~~l~~~v~~Hv~~a 173 (217)
T 1kqf_C 112 GQKMMFWSIMSMIFVLLVTGVI-IWRP---YFAQYFPMQVVRYSLLIHAA-AGIILIHAILIHMYMA 173 (217)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-TCTT---TTGGGSCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHH---hhhhhcCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 4666666655555444443333 3322 233222111111 1123333 4456667788898865
No 9
>1y32_A Humanin; solution structure, alzheimer'S disease, neuroprotection, unknown function; NMR {Synthetic} PDB: 2gd3_A
Probab=5.25 E-value=58 Score=20.50 Aligned_cols=8 Identities=75% Similarity=1.136 Sum_probs=5.8
Q ss_pred ceeecccC
Q 017272 5 SCLLLSSS 12 (374)
Q Consensus 5 ~~~~~~~~ 12 (374)
|||||+.+
T Consensus 7 sCLLL~~s 14 (26)
T 1y32_A 7 SCLLLLTS 14 (26)
T ss_dssp HHHHHHHH
T ss_pred EEEEEEcc
Confidence 78888754
No 10
>3flk_A Tartrate dehydrogenase/decarboxylase; cytoplasm, lyase, magnesium, manganese, NAD, oxidoreductase; HET: NAD; 2.00A {Pseudomonas putida} PDB: 3fmx_X*
Probab=4.77 E-value=3.9e+02 Score=26.23 Aligned_cols=29 Identities=38% Similarity=0.653 Sum_probs=18.9
Q ss_pred eecccCCCCCccccccCccccceeeEeecccc
Q 017272 40 CKLKPAPPCPLTLFFNSNPAKQKIVLVRSRTE 71 (374)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (374)
||.-|.-+||+. +..+..-.+|+||.+|+
T Consensus 110 ~~~~pg~~splk---~~~~~~vD~vivREnte 138 (364)
T 3flk_A 110 VRLFPGVPCALA---NRKVGDIDFVVVRENTE 138 (364)
T ss_dssp EECCTTCCCSBT---TCCTTSSEEEEEEECSS
T ss_pred EeccCCcccccc---cccCCCCCEEEEeeCCC
Confidence 565566667753 22233457999999996
Done!