Query 017272
Match_columns 374
No_of_seqs 187 out of 492
Neff 4.7
Searched_HMMs 13730
Date Mon Mar 25 11:46:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017272.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/017272hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1jb9a1 b.43.4.2 (A:6-162) Fer 12.1 85 0.0062 25.0 3.8 44 31-74 1-44 (157)
2 d1u9ka_ b.1.1.1 (A:) TREM-1 (t 11.6 63 0.0046 24.0 2.6 12 83-94 77-88 (110)
3 d1sjva_ b.1.1.1 (A:) Camelid I 11.3 37 0.0027 26.0 1.2 13 83-95 76-88 (107)
4 d1w0da_ c.77.1.1 (A:) 3-isopro 11.0 58 0.0042 29.2 2.6 29 39-72 99-127 (337)
5 d1hqsa_ c.77.1.1 (A:) Isocitra 10.0 73 0.0053 29.5 2.9 28 40-72 122-149 (423)
6 d1nekc_ f.21.2.2 (C:) Succinat 8.9 2.9E+02 0.021 20.6 5.8 71 120-191 46-121 (129)
7 d1pb1a_ c.77.1.1 (A:) Isocitra 8.5 90 0.0066 28.7 3.0 29 39-72 130-158 (416)
8 d3c9ua1 d.79.4.1 (A:1-137) Thi 7.7 53 0.0039 25.5 0.8 14 85-98 23-36 (137)
9 d1tjgl1 b.1.1.1 (L:1-107) Immu 6.8 2.3E+02 0.017 20.1 4.2 13 31-43 14-26 (107)
10 d1ncwl1 b.1.1.1 (L:1-107) Immu 6.4 2.2E+02 0.016 20.6 3.8 13 31-43 14-26 (112)
No 1
>d1jb9a1 b.43.4.2 (A:6-162) Ferredoxin reductase (flavodoxin reductase) N-terminal domain {Maize (Zea mays), root isoform [TaxId: 4577]}
Probab=12.14 E-value=85 Score=25.03 Aligned_cols=44 Identities=25% Similarity=0.227 Sum_probs=33.2
Q ss_pred CccceeeEeeecccCCCCCccccccCccccceeeEeecccccCC
Q 017272 31 STSASVSISCKLKPAPPCPLTLFFNSNPAKQKIVLVRSRTETGS 74 (374)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (374)
|++.+..+.-++|.+..=|...|.-.||...|++-++.-|..|.
T Consensus 1 ~~~~~~~~p~~~~~~~e~p~~~y~~~nP~~a~v~~n~~Lt~~~s 44 (157)
T d1jb9a1 1 SRSKVSVAPLHLESAKEPPLNTYKPKEPFTATIVSVESLVGPKA 44 (157)
T ss_dssp CCSSEECSCGGGGCCSSCCCCSBBTTBCEEEEEEEEEECSCTTS
T ss_pred CCccccccccccccccCCCcccCCCCCCeEEEEEeEEEcccCCC
Confidence 34555566677888888999999999999999886665555443
No 2
>d1u9ka_ b.1.1.1 (A:) TREM-1 (triggering receptor expressed on myeloid cells 1) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=11.61 E-value=63 Score=24.05 Aligned_cols=12 Identities=25% Similarity=0.335 Sum_probs=8.5
Q ss_pred cccccccccccc
Q 017272 83 ATLAGEDSAAFD 94 (374)
Q Consensus 83 ~~~~~~~~~~~~ 94 (374)
-.|--||+|.+-
T Consensus 77 ~~L~~eDsa~Yy 88 (110)
T d1u9ka_ 77 TDLQVTDSGLYR 88 (110)
T ss_dssp CSCCGGGCEEEE
T ss_pred CccccCCCEEEE
Confidence 347788988763
No 3
>d1sjva_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]}
Probab=11.32 E-value=37 Score=26.02 Aligned_cols=13 Identities=31% Similarity=0.429 Sum_probs=9.6
Q ss_pred ccccccccccccc
Q 017272 83 ATLAGEDSAAFDL 95 (374)
Q Consensus 83 ~~~~~~~~~~~~~ 95 (374)
..|--||+|++--
T Consensus 76 ~~l~~eDtAvYyC 88 (107)
T d1sjva_ 76 NSLEPEDTAVYYC 88 (107)
T ss_dssp CSCCGGGCSEEEE
T ss_pred cCCCcccceeeeE
Confidence 3578899998744
No 4
>d1w0da_ c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPMDH {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=10.97 E-value=58 Score=29.16 Aligned_cols=29 Identities=31% Similarity=0.418 Sum_probs=20.1
Q ss_pred eeecccCCCCCccccccCccccceeeEeeccccc
Q 017272 39 SCKLKPAPPCPLTLFFNSNPAKQKIVLVRSRTET 72 (374)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (374)
-||.-|..+||... +..-.+|+||.||+=
T Consensus 99 P~r~~~g~~~~~~~-----~~~vD~vivREnteG 127 (337)
T d1w0da_ 99 PARLYPGVASPLSG-----NPGIDFVVVREGTEG 127 (337)
T ss_dssp EEECCTTCCCSBTT-----CCCCEEEEEEECSCS
T ss_pred eEeecCcccccccc-----CCCcCeeeHhhhhcC
Confidence 46777777777432 234689999999864
No 5
>d1hqsa_ c.77.1.1 (A:) Isocitrate dehydrogenase, ICDH {Bacillus subtilis [TaxId: 1423]}
Probab=9.96 E-value=73 Score=29.52 Aligned_cols=28 Identities=25% Similarity=0.529 Sum_probs=20.2
Q ss_pred eecccCCCCCccccccCccccceeeEeeccccc
Q 017272 40 CKLKPAPPCPLTLFFNSNPAKQKIVLVRSRTET 72 (374)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (374)
|+.-|.-+||+. ++..-.+|+||-||+=
T Consensus 122 ~~~~pgv~splk-----~~~~iD~vIvREnteG 149 (423)
T d1hqsa_ 122 VRYFTGVPSPVK-----RPEDTDMVIFRENTED 149 (423)
T ss_dssp EECCTTCCCSBS-----CGGGCEEEEEEECSCG
T ss_pred ecccCCCCCccc-----cCCCCcEEEEcccCcc
Confidence 666677778873 3445689999999863
No 6
>d1nekc_ f.21.2.2 (C:) Succinate dehydrogenase subunit SdhC {Escherichia coli [TaxId: 562]}
Probab=8.90 E-value=2.9e+02 Score=20.59 Aligned_cols=71 Identities=14% Similarity=0.124 Sum_probs=38.1
Q ss_pred HHhcccCCCcccccccccCCCchHHHHHHHHHHHHHHHhhCcchhhhHHHHh-hccc----chhhHHHHHHHHHHHH
Q 017272 120 LWIDNSTGYGKAFIDSVSSLSDSHEVVMLVLILIFATVHSGLASLRDMGEKV-IGAR----AYRVLFAGVSLPLAVS 191 (374)
Q Consensus 120 ~w~~~~~~~~~~~~d~~~~~s~~~~lilillLllF~~~HSllaslR~~li~~-lG~~----~YR~lYSLLSLv~Lvl 191 (374)
.|+.-.+...+.| +.....-.+...-.+.....|+..+=...++|.-+-.. .|.. .++..|.++.+..+..
T Consensus 46 ~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~yH~~nGIRHL~wD~G~g~~~~~~~~~s~~~~~~~si~~s 121 (129)
T d1nekc_ 46 WLLGTSLSSPEGF-EQASAIMGSFFVKFIMWGILTALAYHVVVGIRHMMMDFGYLEETFEAGKRSAKISFVITVVLS 121 (129)
T ss_dssp HHHHHHHHCHHHH-HHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhccchHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcccchhhHHHHHHHHHHHHHHHHHHH
Confidence 3444333333444 44444445555555666667777777788888866553 2222 3566665555444333
No 7
>d1pb1a_ c.77.1.1 (A:) Isocitrate dehydrogenase, ICDH {Escherichia coli [TaxId: 562]}
Probab=8.51 E-value=90 Score=28.71 Aligned_cols=29 Identities=21% Similarity=0.517 Sum_probs=20.5
Q ss_pred eeecccCCCCCccccccCccccceeeEeeccccc
Q 017272 39 SCKLKPAPPCPLTLFFNSNPAKQKIVLVRSRTET 72 (374)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (374)
-||.-|..+||+. ++..-.+|+||-||+-
T Consensus 130 P~r~~pg~~spl~-----~~~~iD~vIvREnteG 158 (416)
T d1pb1a_ 130 PVRYYQGTPSPVK-----HPELTDMVIFRENSED 158 (416)
T ss_dssp EEECCTTCCCSSS-----CGGGCEEEEEEECSSG
T ss_pred eeeccCCCCcccc-----cccccceEEEeecccc
Confidence 3666777788873 3344578999999864
No 8
>d3c9ua1 d.79.4.1 (A:1-137) Thiamine monophosphate kinase (ThiL) N-terminal domain {Aquifex aeolicus [TaxId: 63363]}
Probab=7.72 E-value=53 Score=25.48 Aligned_cols=14 Identities=21% Similarity=0.515 Sum_probs=12.0
Q ss_pred cccccccccccccc
Q 017272 85 LAGEDSAAFDLKNQ 98 (374)
Q Consensus 85 ~~~~~~~~~~~~~~ 98 (374)
.+|+|+|+++.+++
T Consensus 23 ~iGDDaavi~~~~~ 36 (137)
T d3c9ua1 23 VIGDDTAPVEYCSK 36 (137)
T ss_dssp STTSSSEEEEETTE
T ss_pred CCCCCEEEEEcCCC
Confidence 57999999998776
No 9
>d1tjgl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Engineered (including hybrid species)}
Probab=6.79 E-value=2.3e+02 Score=20.08 Aligned_cols=13 Identities=23% Similarity=0.649 Sum_probs=10.2
Q ss_pred CccceeeEeeecc
Q 017272 31 STSASVSISCKLK 43 (374)
Q Consensus 31 ~~~~~~~~~~~~~ 43 (374)
+...+|.|+|+..
T Consensus 14 ~~G~svtL~C~~s 26 (107)
T d1tjgl1 14 SVGDRITITCRAS 26 (107)
T ss_dssp CTTCCEEEEEEES
T ss_pred CCCCCEEEEEEEC
Confidence 4567899999875
No 10
>d1ncwl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}
Probab=6.40 E-value=2.2e+02 Score=20.62 Aligned_cols=13 Identities=38% Similarity=0.583 Sum_probs=9.7
Q ss_pred CccceeeEeeecc
Q 017272 31 STSASVSISCKLK 43 (374)
Q Consensus 31 ~~~~~~~~~~~~~ 43 (374)
+...+|.|+|+..
T Consensus 14 ~~G~svtl~C~~s 26 (112)
T d1ncwl1 14 TIGQPASISCKSS 26 (112)
T ss_dssp ETTSCEEEEEEES
T ss_pred CCCCCEEEEEEEC
Confidence 3456899999864
Done!