BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 017273
         (374 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4DOO|A Chain A, Crystal Structure Of Arabidopsis Thaliana Fatty-Acid
           Binding Protein At3g63170 (Atfap1)
 pdb|4DOO|B Chain B, Crystal Structure Of Arabidopsis Thaliana Fatty-Acid
           Binding Protein At3g63170 (Atfap1)
          Length = 205

 Score = 85.1 bits (209), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 48/157 (30%), Positives = 81/157 (51%), Gaps = 11/157 (7%)

Query: 207 AVEPRTGIEFPMILDNVIDGENYSSSTSEVLVGTGSRTIKIVKIKSLKVYAFAFYVHPRS 266
            VEP+TG  FP            S   S  L+G G R   ++ +K++ VYAF  Y     
Sbjct: 5   VVEPKTGFSFPA-----------SIGDSRRLLGVGLRKKSLLGLKNIDVYAFGVYADCDD 53

Query: 267 VCEKLGPKYASISVAELNKCGGFYEDLLREDIDMTVRLVINCNGMKVNAVKDVFEKSLRA 326
           V + +G KYA++  +E+     F +DL+  DI MT+RL I    + + +V++ F++S+  
Sbjct: 54  VKKLVGDKYANLPASEIRGNKSFMDDLMEADIKMTIRLQIVYGKLNIRSVRNAFQESVGN 113

Query: 327 RLEKANPNTDYHCLESFGSYFSKDIPLPLGTVINFRR 363
           RL+K   + +   L+SF S F  +  +P  + I+  +
Sbjct: 114 RLKKFGGSDNDELLQSFTSLFKDEYKIPRNSTIDLTK 150


>pdb|2D1I|A Chain A, Structure Of Human Atg4b
 pdb|2D1I|B Chain B, Structure Of Human Atg4b
          Length = 398

 Score = 30.8 bits (68), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 18/45 (40%), Positives = 23/45 (51%), Gaps = 1/45 (2%)

Query: 94  QVKQITSTGHNLTGFHLSSNSESEYACPVVFN-KVSSSAIRRLFR 137
           QVK+++  G  L  F L     S  ACP V N  + SS + RL R
Sbjct: 340 QVKKLSLLGGALPMFELVEQQPSHLACPDVLNLSLDSSDVERLER 384


>pdb|2CY7|A Chain A, The Crystal Structure Of Human Atg4b
          Length = 396

 Score = 30.8 bits (68), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 18/45 (40%), Positives = 23/45 (51%), Gaps = 1/45 (2%)

Query: 94  QVKQITSTGHNLTGFHLSSNSESEYACPVVFN-KVSSSAIRRLFR 137
           QVK+++  G  L  F L     S  ACP V N  + SS + RL R
Sbjct: 338 QVKKLSLLGGALPMFELVEQQPSHLACPDVLNLSLDSSDVERLER 382


>pdb|3KYA|A Chain A, Crystal Structure Of Putative Phosphatase (Np_812416.1)
           From Bacteroides Thetaiotaomicron Vpi-5482 At 1.77 A
           Resolution
          Length = 496

 Score = 30.4 bits (67), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 3/50 (6%)

Query: 210 PRTGIEFPMILDNVIDGENYSSSTSEVLVGTGSRTIKIVKIKSLKVYAFA 259
           P+ G  +  +L   I GEN+ +  S+V V  G +   ++ +KS  VY F 
Sbjct: 25  PKEGGAYQKLL---IYGENFGTDVSKVKVKIGGKDAIVINVKSTYVYCFV 71


>pdb|3LQB|A Chain A, Crystal Structure Of The Hatching Enzyme Zhe1 From The
           Zebrafish Danio Rerio
          Length = 199

 Score = 29.6 bits (65), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 23/75 (30%), Positives = 32/75 (42%), Gaps = 6/75 (8%)

Query: 270 KLGPKYASISVAELNKCGGFYEDLLREDIDMTVRLVINCNGMKVNAVKDVFEKSLRARLE 329
           + G  Y+ I+  ELN   GFY +  R D D  VR  IN N +      +     L+ +  
Sbjct: 88  RKGCVYSGIAQHELNHALGFYHEQSRSDRDQYVR--INWNNISPGMAYNF----LKQKTN 141

Query: 330 KANPNTDYHCLESFG 344
             N   DY  L  +G
Sbjct: 142 NQNTPYDYGSLMHYG 156


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.319    0.135    0.399 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,483,802
Number of Sequences: 62578
Number of extensions: 401885
Number of successful extensions: 898
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 895
Number of HSP's gapped (non-prelim): 6
length of query: 374
length of database: 14,973,337
effective HSP length: 100
effective length of query: 274
effective length of database: 8,715,537
effective search space: 2388057138
effective search space used: 2388057138
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)