BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017274
(374 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8Z3X0|GCSP_SALTI Glycine dehydrogenase [decarboxylating] OS=Salmonella typhi GN=gcvP
PE=3 SV=3
Length = 957
Score = 34.3 bits (77), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 49/109 (44%), Gaps = 13/109 (11%)
Query: 89 NFSIFIHSAPGFVFDELTTRSKFFYGRQLSNSIQVAWGESSMIAAERLLLEAALEDPANQ 148
N IH+A G DE TTR QL N V G+S + E L + AL+ + Q
Sbjct: 411 NLRSDIHNAVGITLDETTTRENV---AQLFN---VLLGDSHGLNIETLDKDVALDSRSIQ 464
Query: 149 RFVLLSDSCV--PIYNFSYVYKYLMASPRSFVDSFLDRKESRYNPKMSP 195
+ +L D+ + P++N + +M S L+RK+ N M P
Sbjct: 465 QGMLRDDAILTHPVFNRYHSETEMMRYMHS-----LERKDLALNQAMIP 508
>sp|A9N3N1|GCSP_SALPB Glycine dehydrogenase [decarboxylating] OS=Salmonella paratyphi B
(strain ATCC BAA-1250 / SPB7) GN=gcvP PE=3 SV=1
Length = 957
Score = 33.9 bits (76), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 49/109 (44%), Gaps = 13/109 (11%)
Query: 89 NFSIFIHSAPGFVFDELTTRSKFFYGRQLSNSIQVAWGESSMIAAERLLLEAALEDPANQ 148
N IH+A G DE TTR QL N V G+S + E L + AL+ + Q
Sbjct: 411 NLRSDIHNAVGITLDETTTRENV---AQLFN---VLLGDSHGLNIETLDKDVALDSRSIQ 464
Query: 149 RFVLLSDSCV--PIYNFSYVYKYLMASPRSFVDSFLDRKESRYNPKMSP 195
+ +L D+ + P++N + +M S L+RK+ N M P
Sbjct: 465 QSMLRDDAILTHPVFNRYHSETEMMRYMHS-----LERKDLALNQAMIP 508
>sp|Q8ZM76|GCSP_SALTY Glycine dehydrogenase [decarboxylating] OS=Salmonella typhimurium
(strain LT2 / SGSC1412 / ATCC 700720) GN=gcvP PE=3 SV=3
Length = 957
Score = 33.9 bits (76), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 49/109 (44%), Gaps = 13/109 (11%)
Query: 89 NFSIFIHSAPGFVFDELTTRSKFFYGRQLSNSIQVAWGESSMIAAERLLLEAALEDPANQ 148
N IH+A G DE TTR QL N V G+S + E L + AL+ + Q
Sbjct: 411 NLRSDIHNAVGITLDETTTRENV---AQLFN---VLLGDSHGLNIETLDKDVALDSRSIQ 464
Query: 149 RFVLLSDSCV--PIYNFSYVYKYLMASPRSFVDSFLDRKESRYNPKMSP 195
+ +L D+ + P++N + +M S L+RK+ N M P
Sbjct: 465 QSMLRDDAILTHPVFNRYHSETEMMRYMHS-----LERKDLALNQAMIP 508
>sp|C0PY26|GCSP_SALPC Glycine dehydrogenase [decarboxylating] OS=Salmonella paratyphi C
(strain RKS4594) GN=gcvP PE=3 SV=1
Length = 957
Score = 33.9 bits (76), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 49/109 (44%), Gaps = 13/109 (11%)
Query: 89 NFSIFIHSAPGFVFDELTTRSKFFYGRQLSNSIQVAWGESSMIAAERLLLEAALEDPANQ 148
N IH+A G DE TTR QL N V G+S + E L + AL+ + Q
Sbjct: 411 NLRSDIHNAVGITLDETTTRENV---AQLFN---VLLGDSHGLNIETLDKDVALDSRSIQ 464
Query: 149 RFVLLSDSCV--PIYNFSYVYKYLMASPRSFVDSFLDRKESRYNPKMSP 195
+ +L D+ + P++N + +M S L+RK+ N M P
Sbjct: 465 QSMLRDDAILTHPVFNRYHSETEMMRYMHS-----LERKDLALNQAMIP 508
>sp|B5F5H7|GCSP_SALA4 Glycine dehydrogenase [decarboxylating] OS=Salmonella agona (strain
SL483) GN=gcvP PE=3 SV=1
Length = 957
Score = 33.9 bits (76), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 49/109 (44%), Gaps = 13/109 (11%)
Query: 89 NFSIFIHSAPGFVFDELTTRSKFFYGRQLSNSIQVAWGESSMIAAERLLLEAALEDPANQ 148
N IH+A G DE TTR QL N V G+S + E L + AL+ + Q
Sbjct: 411 NLRSDIHNAVGITLDETTTRENV---AQLFN---VLLGDSHGLNIETLDKDVALDSRSIQ 464
Query: 149 RFVLLSDSCV--PIYNFSYVYKYLMASPRSFVDSFLDRKESRYNPKMSP 195
+ +L D+ + P++N + +M S L+RK+ N M P
Sbjct: 465 QSMLRDDAILTHPVFNRYHSETEMMRYMHS-----LERKDLALNQAMIP 508
>sp|B4T548|GCSP_SALNS Glycine dehydrogenase [decarboxylating] OS=Salmonella newport
(strain SL254) GN=gcvP PE=3 SV=1
Length = 957
Score = 33.9 bits (76), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 49/109 (44%), Gaps = 13/109 (11%)
Query: 89 NFSIFIHSAPGFVFDELTTRSKFFYGRQLSNSIQVAWGESSMIAAERLLLEAALEDPANQ 148
N IH+A G DE TTR QL N V G+S + E L + AL+ + Q
Sbjct: 411 NLRSDIHNAVGITLDETTTRENV---AQLFN---VLLGDSHGLNIETLDKDVALDSRSIQ 464
Query: 149 RFVLLSDSCV--PIYNFSYVYKYLMASPRSFVDSFLDRKESRYNPKMSP 195
+ +L D+ + P++N + +M S L+RK+ N M P
Sbjct: 465 QSMLRDDAILTHPVFNRYHSETEMMRYMHS-----LERKDLALNQAMIP 508
>sp|Q8WZ42|TITIN_HUMAN Titin OS=Homo sapiens GN=TTN PE=1 SV=4
Length = 34350
Score = 33.9 bits (76), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Query: 41 DISSSAVSRTRSRIHYDGPAKIAFLFLARRELPLDFLW 78
+I+ +VS S+ HYDG AKI + RRELP D W
Sbjct: 26622 NITRKSVSLKWSKPHYDGGAKITGYIVERRELP-DGRW 26658
>sp|B4TGX3|GCSP_SALHS Glycine dehydrogenase [decarboxylating] OS=Salmonella heidelberg
(strain SL476) GN=gcvP PE=3 SV=1
Length = 957
Score = 32.7 bits (73), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 48/109 (44%), Gaps = 13/109 (11%)
Query: 89 NFSIFIHSAPGFVFDELTTRSKFFYGRQLSNSIQVAWGESSMIAAERLLLEAALEDPANQ 148
N IH+A G DE TTR QL N V G S + E L + AL+ + Q
Sbjct: 411 NLRSDIHNAVGITLDETTTRENV---AQLFN---VLLGGSHGLNIETLDKDVALDSRSIQ 464
Query: 149 RFVLLSDSCV--PIYNFSYVYKYLMASPRSFVDSFLDRKESRYNPKMSP 195
+ +L D+ + P++N + +M S L+RK+ N M P
Sbjct: 465 QSMLRDDAILTHPVFNRYHSETEMMRYMHS-----LERKDLALNQAMIP 508
>sp|B5RE14|GCSP_SALG2 Glycine dehydrogenase [decarboxylating] OS=Salmonella gallinarum
(strain 287/91 / NCTC 13346) GN=gcvP PE=3 SV=1
Length = 957
Score = 32.7 bits (73), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 48/109 (44%), Gaps = 13/109 (11%)
Query: 89 NFSIFIHSAPGFVFDELTTRSKFFYGRQLSNSIQVAWGESSMIAAERLLLEAALEDPANQ 148
N IH+A G DE TTR QL N V G S + E L + AL+ + Q
Sbjct: 411 NLRSDIHNAVGITLDETTTRENV---AQLFN---VLLGGSHGLNIETLDKDVALDSRSIQ 464
Query: 149 RFVLLSDSCV--PIYNFSYVYKYLMASPRSFVDSFLDRKESRYNPKMSP 195
+ +L D+ + P++N + +M S L+RK+ N M P
Sbjct: 465 QSMLRDDAILTHPVFNRYHSETEMMRYMHS-----LERKDLALNQAMIP 508
>sp|B5QXI0|GCSP_SALEP Glycine dehydrogenase [decarboxylating] OS=Salmonella enteritidis
PT4 (strain P125109) GN=gcvP PE=3 SV=1
Length = 957
Score = 32.7 bits (73), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 48/109 (44%), Gaps = 13/109 (11%)
Query: 89 NFSIFIHSAPGFVFDELTTRSKFFYGRQLSNSIQVAWGESSMIAAERLLLEAALEDPANQ 148
N IH+A G DE TTR QL N V G S + E L + AL+ + Q
Sbjct: 411 NLRSDIHNAVGITLDETTTRENV---AQLFN---VLLGGSHGLNIETLDKDVALDSRSIQ 464
Query: 149 RFVLLSDSCV--PIYNFSYVYKYLMASPRSFVDSFLDRKESRYNPKMSP 195
+ +L D+ + P++N + +M S L+RK+ N M P
Sbjct: 465 QSMLRDDAILTHPVFNRYHSETEMMRYMHS-----LERKDLALNQAMIP 508
>sp|B5FUG6|GCSP_SALDC Glycine dehydrogenase [decarboxylating] OS=Salmonella dublin
(strain CT_02021853) GN=gcvP PE=3 SV=1
Length = 957
Score = 32.7 bits (73), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 48/109 (44%), Gaps = 13/109 (11%)
Query: 89 NFSIFIHSAPGFVFDELTTRSKFFYGRQLSNSIQVAWGESSMIAAERLLLEAALEDPANQ 148
N IH+A G DE TTR QL N V G S + E L + AL+ + Q
Sbjct: 411 NLRSDIHNAVGITLDETTTRENV---AQLFN---VLLGGSHGLNIETLDKDVALDSRSIQ 464
Query: 149 RFVLLSDSCV--PIYNFSYVYKYLMASPRSFVDSFLDRKESRYNPKMSP 195
+ +L D+ + P++N + +M S L+RK+ N M P
Sbjct: 465 QSMLRDDAILTHPVFNRYHSETEMMRYMHS-----LERKDLALNQAMIP 508
>sp|P10476|GUNA_CELJU Endoglucanase A OS=Cellvibrio japonicus (strain Ueda107) GN=celA
PE=3 SV=2
Length = 962
Score = 31.6 bits (70), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Query: 104 ELTTRSKFFYGRQLSNSIQVAWGESSMIAAERLLLEAALEDPANQRFVL 152
LTT+S Y LS S++ WG +S+IA + +L+ A + NQ F L
Sbjct: 444 HLTTQSASGYPAPLS-SLEYYWGSNSVIANKLVLMGLAYDFSGNQNFAL 491
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.325 0.137 0.425
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 134,341,070
Number of Sequences: 539616
Number of extensions: 5334066
Number of successful extensions: 12704
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 12691
Number of HSP's gapped (non-prelim): 25
length of query: 374
length of database: 191,569,459
effective HSP length: 119
effective length of query: 255
effective length of database: 127,355,155
effective search space: 32475564525
effective search space used: 32475564525
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 62 (28.5 bits)